# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|305662446|ref|YP_003858734.1| - 1.7e-24 85.6 0.4 3.7e-23 81.3 0.1 2.6 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|305662446|ref|YP_003858734.1| - 3.9e-09 37.1 0.2 3.1e-07 30.9 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|305662446|ref|YP_003858734.1| - 3.2e-08 34.1 1.0 5.4e-08 33.3 0.0 1.9 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|305662446|ref|YP_003858734.1| - 3.8e-08 33.7 0.7 6.5e-08 32.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain ATPase_2 PF01637.18 gi|305662446|ref|YP_003858734.1| - 6.2e-05 23.0 0.2 0.00028 20.9 0.2 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_32 PF13654.6 gi|305662446|ref|YP_003858734.1| - 9.7e-05 21.3 0.5 0.26 10.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|305662446|ref|YP_003858734.1| - 0.0027 17.0 0.0 0.0053 16.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DUF815 PF05673.13 gi|305662446|ref|YP_003858734.1| - 0.0047 16.1 0.0 0.0081 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_assoc_2 PF16193.5 gi|305662446|ref|YP_003858734.1| - 0.0049 17.2 0.2 0.013 15.9 0.2 1.7 1 0 0 1 1 1 1 AAA C-terminal domain TniB PF05621.11 gi|305662446|ref|YP_003858734.1| - 0.013 15.0 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial TniB protein Bac_DnaA PF00308.18 gi|305662446|ref|YP_003858734.1| - 0.018 14.9 0.7 0.29 10.9 0.7 2.2 1 1 0 1 1 1 0 Bacterial dnaA protein TsaE PF02367.17 gi|305662446|ref|YP_003858734.1| - 0.024 14.6 0.0 0.058 13.4 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|305662446|ref|YP_003858734.1| - 0.041 13.9 0.1 0.16 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DEAD PF00270.29 gi|305662446|ref|YP_003858734.1| - 0.046 13.5 0.0 3.1 7.6 0.0 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase Torsin PF06309.11 gi|305662446|ref|YP_003858734.1| - 0.082 13.0 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Torsin RNA_helicase PF00910.22 gi|305662446|ref|YP_003858734.1| - 0.083 13.3 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|305662446|ref|YP_003858734.1| - 0.089 12.3 0.0 0.22 11.0 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region ResIII PF04851.15 gi|305662446|ref|YP_003858734.1| - 0.09 12.8 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Mg_chelatase_C PF13335.6 gi|305662446|ref|YP_003858734.1| - 0.094 13.4 0.5 0.18 12.4 0.5 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal AAA_lid_4 PF17864.1 gi|305662446|ref|YP_003858734.1| - 0.12 12.1 0.8 0.28 11.0 0.8 1.6 1 0 0 1 1 1 0 RuvB AAA lid domain AAA_18 PF13238.6 gi|305662446|ref|YP_003858734.1| - 0.14 12.7 2.3 0.15 12.6 0.0 2.3 3 0 0 3 3 1 0 AAA domain AAA_lid_10 PF17872.1 gi|305662446|ref|YP_003858734.1| - 0.19 11.9 0.1 0.39 10.9 0.1 1.5 1 0 0 1 1 1 0 AAA lid domain PIF1 PF05970.14 gi|305662446|ref|YP_003858734.1| - 0.19 10.9 0.0 0.4 9.8 0.0 1.5 1 0 0 1 1 1 0 PIF1-like helicase DUF99 PF01949.16 gi|305662447|ref|YP_003858735.1| - 2.8e-43 147.4 0.0 3.3e-43 147.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 AdoHcyase PF05221.17 gi|305662448|ref|YP_003858736.1| - 2.8e-69 233.5 0.0 6.3e-40 137.2 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|305662448|ref|YP_003858736.1| - 9.4e-57 191.6 1.1 1.7e-56 190.8 1.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|305662448|ref|YP_003858736.1| - 6e-11 42.0 0.3 1.2e-10 41.1 0.3 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|305662448|ref|YP_003858736.1| - 2.3e-08 33.8 0.3 3.9e-08 33.1 0.3 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain THF_DHG_CYH_C PF02882.19 gi|305662448|ref|YP_003858736.1| - 0.0098 15.2 0.5 0.051 12.9 0.5 2.0 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.18 gi|305662448|ref|YP_003858736.1| - 0.07 13.4 0.2 0.2 11.9 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.18 gi|305662448|ref|YP_003858736.1| - 0.086 12.7 0.8 0.18 11.7 0.8 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|305662448|ref|YP_003858736.1| - 0.21 10.9 2.0 0.56 9.5 2.0 1.7 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AAA_17 PF13207.6 gi|305662449|ref|YP_003858737.1| - 9.8e-18 64.9 0.1 1.4e-17 64.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|305662449|ref|YP_003858737.1| - 7.5e-13 49.2 0.1 1e-12 48.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|305662449|ref|YP_003858737.1| - 7e-05 23.0 0.0 0.00027 21.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|305662449|ref|YP_003858737.1| - 0.0003 20.9 0.0 0.00035 20.7 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ATPase PF06745.13 gi|305662449|ref|YP_003858737.1| - 0.0076 15.6 1.2 0.083 12.2 0.0 2.1 2 0 0 2 2 2 1 KaiC KTI12 PF08433.10 gi|305662449|ref|YP_003858737.1| - 0.011 15.2 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|305662449|ref|YP_003858737.1| - 0.015 14.6 0.0 0.036 13.3 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|305662449|ref|YP_003858737.1| - 0.082 12.5 0.1 0.19 11.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain DRTGG PF07085.12 gi|305662449|ref|YP_003858737.1| - 0.11 12.3 0.2 0.18 11.6 0.2 1.3 1 0 0 1 1 1 0 DRTGG domain AAA_16 PF13191.6 gi|305662449|ref|YP_003858737.1| - 0.14 12.5 0.1 1.1 9.6 0.1 2.2 1 1 0 1 1 1 0 AAA ATPase domain RNA_binding PF01877.17 gi|305662450|ref|YP_003858738.1| - 7.3e-20 71.4 2.7 8.6e-20 71.2 2.7 1.1 1 0 0 1 1 1 1 RNA binding DUF5578 PF17741.1 gi|305662450|ref|YP_003858738.1| - 0.0047 16.4 0.0 0.0054 16.2 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5578) CspB_prodomain PF18425.1 gi|305662450|ref|YP_003858738.1| - 0.0076 16.2 0.3 0.013 15.5 0.3 1.4 1 0 0 1 1 1 1 Csp protease B prodomain DDA1 PF10172.9 gi|305662450|ref|YP_003858738.1| - 0.099 12.9 0.8 0.68 10.2 0.1 2.2 1 1 1 2 2 2 0 Det1 complexing ubiquitin ligase LAGLIDADG_1 PF00961.19 gi|305662450|ref|YP_003858738.1| - 0.34 11.9 2.8 0.42 11.6 1.9 1.6 1 1 0 1 1 1 0 LAGLIDADG endonuclease Lactamase_B_2 PF12706.7 gi|305662451|ref|YP_003858739.1| - 3.5e-13 49.5 0.0 4.5e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|305662451|ref|YP_003858739.1| - 8.4e-08 32.4 0.0 1.6e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily UPF0020 PF01170.18 gi|305662452|ref|YP_003858740.1| - 5.8e-26 91.4 0.0 4.8e-25 88.4 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|305662452|ref|YP_003858740.1| - 3.2e-08 33.6 0.1 0.0019 17.9 0.0 2.4 2 1 0 2 2 2 2 DNA methylase Methyltransf_15 PF09445.10 gi|305662452|ref|YP_003858740.1| - 4.2e-07 29.7 0.0 7e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|305662452|ref|YP_003858740.1| - 3e-06 26.9 0.0 4.5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|305662452|ref|YP_003858740.1| - 0.00012 21.8 0.0 0.00019 21.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N2227 PF07942.12 gi|305662452|ref|YP_003858740.1| - 0.0011 18.2 0.1 0.01 15.0 0.0 2.1 2 1 0 3 3 3 1 N2227-like protein N6_Mtase PF02384.16 gi|305662452|ref|YP_003858740.1| - 0.0066 15.8 0.0 0.013 14.8 0.0 1.4 1 1 0 1 1 1 1 N-6 DNA Methylase Pribosyltran PF00156.27 gi|305662453|ref|YP_003858741.1| - 6.4e-18 64.8 0.3 1e-17 64.1 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyltran_N PF13793.6 gi|305662453|ref|YP_003858741.1| - 7.7e-16 58.1 0.0 8e-13 48.4 0.0 2.3 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 gi|305662453|ref|YP_003858741.1| - 8.5e-13 48.7 1.0 2.9e-12 47.0 1.1 1.7 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|305662453|ref|YP_003858741.1| - 0.00033 20.2 0.1 0.00049 19.6 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|305662453|ref|YP_003858741.1| - 0.076 12.5 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Fer4_12 PF13353.6 gi|305662454|ref|YP_003858742.1| - 0.0022 18.3 0.8 0.0051 17.1 0.0 2.0 3 0 0 3 3 3 1 4Fe-4S single cluster domain Cg6151-P PF10233.9 gi|305662454|ref|YP_003858742.1| - 0.0089 16.3 0.3 0.02 15.2 0.3 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein CG6151-P FANCL_C PF11793.8 gi|305662454|ref|YP_003858742.1| - 0.053 13.7 1.3 9.9 6.4 0.1 2.6 2 0 0 2 2 2 0 FANCL C-terminal domain ATP_bind_1 PF03029.17 gi|305662455|ref|YP_003858743.1| - 4.7e-54 183.7 0.0 5.4e-54 183.5 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|305662455|ref|YP_003858743.1| - 0.00012 22.4 0.0 0.0074 16.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|305662455|ref|YP_003858743.1| - 0.0038 17.2 0.0 2.1 8.2 0.1 3.1 3 1 0 3 3 3 1 RsgA GTPase RNA_helicase PF00910.22 gi|305662455|ref|YP_003858743.1| - 0.0046 17.3 0.0 0.011 16.1 0.0 1.7 1 0 0 1 1 1 1 RNA helicase PduV-EutP PF10662.9 gi|305662455|ref|YP_003858743.1| - 0.019 14.7 0.0 20 4.9 0.0 3.5 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Parvo_NS1 PF01057.17 gi|305662455|ref|YP_003858743.1| - 0.029 13.5 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 T2SSE PF00437.20 gi|305662455|ref|YP_003858743.1| - 0.031 13.4 0.0 0.092 11.8 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein APS_kinase PF01583.20 gi|305662455|ref|YP_003858743.1| - 0.038 13.9 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Amidase02_C PF12123.8 gi|305662455|ref|YP_003858743.1| - 0.046 13.4 0.2 5.6 6.7 0.0 2.7 2 0 0 2 2 2 0 N-acetylmuramoyl-l-alanine amidase MMR_HSR1 PF01926.23 gi|305662455|ref|YP_003858743.1| - 0.05 13.7 0.0 0.33 11.1 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase PhoH PF02562.16 gi|305662455|ref|YP_003858743.1| - 0.051 13.0 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|305662455|ref|YP_003858743.1| - 0.053 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|305662455|ref|YP_003858743.1| - 0.056 14.0 0.0 0.093 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|305662455|ref|YP_003858743.1| - 0.065 12.4 0.0 0.15 11.2 0.0 1.6 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_16 PF13191.6 gi|305662455|ref|YP_003858743.1| - 0.068 13.6 0.0 0.092 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|305662455|ref|YP_003858743.1| - 0.11 12.5 0.0 0.59 10.0 0.0 2.1 3 0 0 3 3 3 0 NTPase AAA_30 PF13604.6 gi|305662455|ref|YP_003858743.1| - 0.2 11.4 0.0 0.32 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Baculo_PEP_C PF04513.12 gi|305662456|ref|YP_003858744.1| - 2.4e-07 30.9 34.8 0.00079 19.5 9.6 3.5 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.9 gi|305662456|ref|YP_003858744.1| - 5.5e-07 29.7 49.9 2.5e-05 24.3 24.1 3.6 1 1 3 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 gi|305662456|ref|YP_003858744.1| - 9.8e-07 27.9 42.7 0.0024 16.8 8.2 2.6 2 1 0 2 2 2 2 Spc7 kinetochore protein DHR10 PF18595.1 gi|305662456|ref|YP_003858744.1| - 4.3e-05 23.5 43.1 0.0074 16.3 10.3 4.4 2 2 2 4 4 4 3 Designed helical repeat protein 10 domain Fez1 PF06818.15 gi|305662456|ref|YP_003858744.1| - 4.8e-05 23.9 40.7 0.0052 17.3 14.8 3.1 1 1 1 3 3 3 2 Fez1 EzrA PF06160.12 gi|305662456|ref|YP_003858744.1| - 0.00017 19.9 48.8 0.00025 19.3 48.8 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA NPV_P10 PF05531.12 gi|305662456|ref|YP_003858744.1| - 0.00023 21.6 32.7 0.0037 17.7 2.7 5.1 1 1 5 6 6 6 3 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|305662456|ref|YP_003858744.1| - 0.00089 19.3 33.4 0.11 12.5 6.0 4.2 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) DUF1204 PF06721.11 gi|305662456|ref|YP_003858744.1| - 0.0019 17.7 9.3 0.0019 17.7 9.3 2.4 2 1 1 3 3 2 1 Protein of unknown function (DUF1204) DUF724 PF05266.14 gi|305662456|ref|YP_003858744.1| - 0.002 18.0 14.5 0.002 18.0 14.5 3.5 1 1 3 4 4 4 1 Protein of unknown function (DUF724) Sec34 PF04136.15 gi|305662456|ref|YP_003858744.1| - 0.002 18.0 26.3 0.036 14.0 12.3 3.1 2 1 0 2 2 2 2 Sec34-like family Dynactin_p22 PF07426.11 gi|305662456|ref|YP_003858744.1| - 0.0021 17.9 1.9 0.0021 17.9 1.9 4.8 2 2 3 5 5 5 1 Dynactin subunit p22 Syntaxin_2 PF14523.6 gi|305662456|ref|YP_003858744.1| - 0.0021 18.4 11.1 0.0021 18.4 11.1 3.9 2 2 2 4 4 4 1 Syntaxin-like protein TolA_bind_tri PF16331.5 gi|305662456|ref|YP_003858744.1| - 0.0032 17.5 5.0 0.0032 17.5 5.0 5.2 4 3 1 5 5 4 1 TolA binding protein trimerisation IFT57 PF10498.9 gi|305662456|ref|YP_003858744.1| - 0.0033 16.5 44.2 0.016 14.2 6.8 3.3 1 1 1 3 3 3 2 Intra-flagellar transport protein 57 Occludin_ELL PF07303.13 gi|305662456|ref|YP_003858744.1| - 0.0044 17.7 31.1 0.019 15.7 4.4 4.2 1 1 3 4 4 4 1 Occludin homology domain Tup_N PF08581.10 gi|305662456|ref|YP_003858744.1| - 0.0079 16.5 5.5 0.0079 16.5 5.5 5.4 1 1 3 5 5 5 2 Tup N-terminal ATG16 PF08614.11 gi|305662456|ref|YP_003858744.1| - 0.0097 16.1 43.8 0.17 12.1 12.2 3.4 2 1 0 3 3 3 2 Autophagy protein 16 (ATG16) TPR_MLP1_2 PF07926.12 gi|305662456|ref|YP_003858744.1| - 0.01 15.9 36.6 0.31 11.1 7.7 4.5 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein kleA_kleC PF17383.2 gi|305662456|ref|YP_003858744.1| - 0.013 15.8 6.9 1.4 9.3 0.2 4.1 2 1 1 4 4 4 0 Uncharacterized KorC regulated protein A TMF_TATA_bd PF12325.8 gi|305662456|ref|YP_003858744.1| - 0.013 15.7 45.5 0.028 14.6 7.7 4.5 1 1 3 4 4 4 0 TATA element modulatory factor 1 TATA binding RasGAP_C PF03836.15 gi|305662456|ref|YP_003858744.1| - 0.014 15.5 17.7 0.014 15.5 17.7 3.3 2 2 1 3 3 3 0 RasGAP C-terminus DUF2203 PF09969.9 gi|305662456|ref|YP_003858744.1| - 0.015 16.0 24.1 0.57 10.9 1.4 3.5 1 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) GAS PF13851.6 gi|305662456|ref|YP_003858744.1| - 0.016 14.6 12.6 0.016 14.6 12.6 4.1 2 2 2 4 4 4 0 Growth-arrest specific micro-tubule binding PRKG1_interact PF15898.5 gi|305662456|ref|YP_003858744.1| - 0.016 16.1 2.6 0.016 16.1 2.6 5.1 1 1 2 3 3 2 0 cGMP-dependent protein kinase interacting domain DUF948 PF06103.11 gi|305662456|ref|YP_003858744.1| - 0.017 15.4 16.7 0.9 9.8 2.7 4.0 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) MscS_porin PF12795.7 gi|305662456|ref|YP_003858744.1| - 0.023 14.2 40.0 0.18 11.3 15.7 2.7 2 1 0 2 2 2 0 Mechanosensitive ion channel porin domain Laminin_I PF06008.14 gi|305662456|ref|YP_003858744.1| - 0.029 14.1 34.8 0.051 13.3 18.8 2.3 2 0 0 2 2 2 0 Laminin Domain I FlaC_arch PF05377.11 gi|305662456|ref|YP_003858744.1| - 0.035 14.5 48.3 0.086 13.2 4.1 7.1 2 2 3 5 5 5 0 Flagella accessory protein C (FlaC) Laminin_II PF06009.12 gi|305662456|ref|YP_003858744.1| - 0.035 14.1 42.6 0.099 12.7 9.5 3.6 2 2 2 4 4 4 0 Laminin Domain II TACC_C PF05010.14 gi|305662456|ref|YP_003858744.1| - 0.039 13.7 38.9 0.3 10.8 23.7 2.8 1 1 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal COG2 PF06148.11 gi|305662456|ref|YP_003858744.1| - 0.04 14.0 32.5 0.31 11.1 8.5 3.8 2 2 0 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 OmpH PF03938.14 gi|305662456|ref|YP_003858744.1| - 0.042 14.2 36.7 0.8 10.0 4.4 3.5 2 1 1 3 3 3 0 Outer membrane protein (OmpH-like) CALCOCO1 PF07888.11 gi|305662456|ref|YP_003858744.1| - 0.048 12.5 35.8 0.092 11.6 35.0 1.9 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like WXG100 PF06013.12 gi|305662456|ref|YP_003858744.1| - 0.051 13.8 9.2 5.7 7.2 0.1 5.3 3 3 1 5 5 5 0 Proteins of 100 residues with WXG FliJ PF02050.16 gi|305662456|ref|YP_003858744.1| - 0.072 13.3 33.8 0.073 13.3 15.0 3.8 1 1 3 5 5 5 0 Flagellar FliJ protein Prefoldin_2 PF01920.20 gi|305662456|ref|YP_003858744.1| - 0.084 12.8 51.6 0.24 11.4 4.2 6.6 2 2 4 6 6 6 0 Prefoldin subunit DUF1644 PF07800.12 gi|305662456|ref|YP_003858744.1| - 0.13 12.4 2.7 0.24 11.4 2.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1644) Filament PF00038.21 gi|305662456|ref|YP_003858744.1| - 0.21 11.1 46.2 3.3 7.2 26.4 3.1 1 1 1 2 2 2 0 Intermediate filament protein MCPsignal PF00015.21 gi|305662456|ref|YP_003858744.1| - 0.23 11.3 15.1 0.41 10.5 0.5 3.3 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF3450 PF11932.8 gi|305662456|ref|YP_003858744.1| - 0.24 10.7 36.2 0.07 12.4 6.4 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) Cep57_MT_bd PF06657.13 gi|305662456|ref|YP_003858744.1| - 0.25 11.8 29.4 0.21 12.0 4.1 4.6 2 2 2 4 4 4 0 Centrosome microtubule-binding domain of Cep57 TMPIT PF07851.13 gi|305662456|ref|YP_003858744.1| - 0.28 10.4 34.9 0.2 10.8 4.2 3.1 2 1 1 3 3 3 0 TMPIT-like protein ApoO PF09769.9 gi|305662456|ref|YP_003858744.1| - 0.3 11.1 10.1 4.4 7.3 0.6 3.7 2 2 0 3 3 3 0 Apolipoprotein O HemX PF04375.14 gi|305662456|ref|YP_003858744.1| - 0.34 10.1 26.2 0.54 9.5 4.1 3.3 1 1 1 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase FapA PF03961.13 gi|305662456|ref|YP_003858744.1| - 0.36 9.4 50.8 0.096 11.3 8.7 3.2 2 1 1 3 3 3 0 Flagellar Assembly Protein A DUF1978 PF09321.10 gi|305662456|ref|YP_003858744.1| - 0.37 10.1 32.5 0.19 11.0 2.4 4.3 1 1 2 4 4 4 0 Domain of unknown function (DUF1978) AAA_13 PF13166.6 gi|305662456|ref|YP_003858744.1| - 0.37 9.4 40.5 0.19 10.3 24.1 2.1 1 1 0 2 2 2 0 AAA domain Mod_r PF07200.13 gi|305662456|ref|YP_003858744.1| - 0.38 10.9 40.9 1.4 9.0 9.6 3.5 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DUF3584 PF12128.8 gi|305662456|ref|YP_003858744.1| - 0.45 8.0 36.2 1 6.8 9.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) DUF4407 PF14362.6 gi|305662456|ref|YP_003858744.1| - 0.48 9.7 23.6 0.12 11.7 10.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) HalX PF08663.10 gi|305662456|ref|YP_003858744.1| - 0.48 10.8 17.5 0.96 9.8 0.2 5.5 3 3 2 5 5 5 0 HalX domain DUF4201 PF13870.6 gi|305662456|ref|YP_003858744.1| - 0.49 10.1 52.6 1.7 8.3 9.7 4.1 2 2 1 3 3 3 0 Domain of unknown function (DUF4201) HAUS-augmin3 PF14932.6 gi|305662456|ref|YP_003858744.1| - 0.6 9.6 32.3 0.42 10.2 13.5 3.0 2 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 WEMBL PF05701.11 gi|305662456|ref|YP_003858744.1| - 1 8.0 35.5 8.4 4.9 35.4 2.0 1 1 0 1 1 1 0 Weak chloroplast movement under blue light APG6_N PF17675.1 gi|305662456|ref|YP_003858744.1| - 1 9.9 44.6 0.57 10.7 8.9 3.7 1 1 2 3 3 3 0 Apg6 coiled-coil region Exonuc_VII_L PF02601.15 gi|305662456|ref|YP_003858744.1| - 1.3 8.5 35.5 1.8e+04 -10.5 35.5 2.3 1 1 0 1 1 0 0 Exonuclease VII, large subunit COG5 PF10392.9 gi|305662456|ref|YP_003858744.1| - 1.4 9.1 33.0 0.72 10.0 4.5 4.1 1 1 3 4 4 4 0 Golgi transport complex subunit 5 THOC7 PF05615.13 gi|305662456|ref|YP_003858744.1| - 1.7 8.9 36.7 2.3 8.5 19.2 3.1 1 1 0 2 2 2 0 Tho complex subunit 7 Atg14 PF10186.9 gi|305662456|ref|YP_003858744.1| - 1.7 7.6 51.9 3.3 6.7 14.9 2.7 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Flagellin_N PF00669.20 gi|305662456|ref|YP_003858744.1| - 1.9 8.6 19.0 0.84 9.7 1.4 4.0 3 1 1 4 4 4 0 Bacterial flagellin N-terminal helical region PCRF PF03462.18 gi|305662456|ref|YP_003858744.1| - 1.9 8.3 32.6 0.67 9.8 4.1 3.7 1 1 3 4 4 4 0 PCRF domain DUF4763 PF15960.5 gi|305662456|ref|YP_003858744.1| - 2.2 7.5 39.3 1.3 8.2 6.8 4.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4763) PI_PP_I PF18363.1 gi|305662456|ref|YP_003858744.1| - 2.2 8.5 20.6 1.3 9.2 2.7 3.7 1 1 1 3 3 3 0 Phosphoinositide phosphatase insertion domain CorA PF01544.18 gi|305662456|ref|YP_003858744.1| - 2.4 7.4 36.5 0.13 11.6 13.8 3.7 1 1 3 4 4 4 0 CorA-like Mg2+ transporter protein FliD_N PF02465.18 gi|305662456|ref|YP_003858744.1| - 2.6 8.8 27.1 1.3 9.8 2.7 4.6 2 2 1 3 3 3 0 Flagellar hook-associated protein 2 N-terminus BRE1 PF08647.11 gi|305662456|ref|YP_003858744.1| - 2.7 8.1 47.0 0.21 11.7 14.7 4.0 2 2 1 3 3 3 0 BRE1 E3 ubiquitin ligase DASH_Dam1 PF08653.10 gi|305662456|ref|YP_003858744.1| - 2.7 7.9 17.6 2.5 8.0 0.2 5.4 4 1 1 6 6 5 0 DASH complex subunit Dam1 PI3K_P85_iSH2 PF16454.5 gi|305662456|ref|YP_003858744.1| - 3.1 7.4 37.8 0.79 9.3 18.0 3.7 1 1 1 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Nup54_57_C PF18570.1 gi|305662456|ref|YP_003858744.1| - 3.3 7.4 11.4 1.5 8.5 0.2 4.4 5 0 0 5 5 3 0 NUP57/Nup54 C-terminal domain Psu PF07455.11 gi|305662456|ref|YP_003858744.1| - 3.5 7.2 7.6 2.3 7.8 0.3 2.9 2 1 0 2 2 2 0 Phage polarity suppression protein (Psu) Prominin PF05478.11 gi|305662456|ref|YP_003858744.1| - 4 5.3 38.0 4.3 5.2 9.0 2.5 1 1 1 2 2 2 0 Prominin CENP-K PF11802.8 gi|305662456|ref|YP_003858744.1| - 4.2 6.9 46.5 5.1 6.6 10.7 2.1 1 1 1 2 2 2 0 Centromere-associated protein K Prefoldin PF02996.17 gi|305662456|ref|YP_003858744.1| - 4.2 7.3 39.9 0.35 10.8 4.5 6.6 2 2 4 7 7 7 0 Prefoldin subunit YtxH PF12732.7 gi|305662456|ref|YP_003858744.1| - 4.7 7.8 17.0 21 5.7 0.2 4.3 2 2 0 2 2 1 0 YtxH-like protein DUF745 PF05335.13 gi|305662456|ref|YP_003858744.1| - 5 6.8 18.2 1.7 8.4 7.4 3.1 2 2 0 2 2 2 0 Protein of unknown function (DUF745) Seryl_tRNA_N PF02403.22 gi|305662456|ref|YP_003858744.1| - 5.4 7.3 53.8 0.028 14.7 17.9 4.7 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Nup54 PF13874.6 gi|305662456|ref|YP_003858744.1| - 5.7 7.0 37.0 0.67 10.1 4.3 3.8 1 1 3 4 4 4 0 Nucleoporin complex subunit 54 DUF2408 PF10303.9 gi|305662456|ref|YP_003858744.1| - 6 7.4 39.3 1.6 9.3 11.8 4.1 1 1 2 4 4 4 0 Protein of unknown function (DUF2408) DUF5082 PF16888.5 gi|305662456|ref|YP_003858744.1| - 6.7 7.0 47.3 1.5 9.1 3.8 4.9 1 1 3 4 4 4 0 Domain of unknown function (DUF5082) DUF4298 PF14131.6 gi|305662456|ref|YP_003858744.1| - 7.5 6.6 29.7 0.064 13.2 1.3 5.4 3 2 3 6 6 6 0 Domain of unknown function (DUF4298) CENP-H PF05837.12 gi|305662456|ref|YP_003858744.1| - 8.4 6.9 40.8 1 9.8 6.6 3.5 2 2 1 3 3 3 0 Centromere protein H (CENP-H) UPF0242 PF06785.11 gi|305662456|ref|YP_003858744.1| - 9.2 6.3 47.4 0.15 12.1 23.8 2.7 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF373 PF04123.13 gi|305662457|ref|YP_003858745.1| - 3.9e-70 236.9 26.5 4.7e-70 236.7 26.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Prenyltransf PF01255.19 gi|305662458|ref|YP_003858746.1| - 4.3e-70 235.7 0.0 5.1e-70 235.5 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Ribosomal_S8e PF01201.22 gi|305662459|ref|YP_003858747.1| - 8.3e-33 113.5 1.3 9.2e-33 113.3 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.17 gi|305662460|ref|YP_003858748.1| - 2.1e-18 67.0 0.0 2.5e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein Gar1 PF04410.14 gi|305662461|ref|YP_003858749.1| - 6.4e-12 45.5 0.1 7e-12 45.4 0.1 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|305662462|ref|YP_003858750.1| - 2.1e-17 62.9 0.1 3.4e-13 49.4 0.1 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|305662462|ref|YP_003858750.1| - 9.6e-08 31.4 0.2 1.8e-07 30.6 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|305662462|ref|YP_003858750.1| - 0.00038 20.2 0.4 0.013 15.3 0.2 2.2 1 1 1 2 2 2 1 Cyclin, N-terminal domain Sigma70_r4 PF04545.16 gi|305662462|ref|YP_003858750.1| - 0.00079 18.9 0.2 0.012 15.1 0.1 2.6 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|305662462|ref|YP_003858750.1| - 0.014 15.8 0.0 5.4 7.4 0.0 3.4 3 1 0 3 3 3 0 Helix-turn-helix domain SpoIIID PF12116.8 gi|305662462|ref|YP_003858750.1| - 0.025 14.7 2.6 0.67 10.1 1.1 2.5 2 0 0 2 2 2 0 Stage III sporulation protein D HTH_23 PF13384.6 gi|305662462|ref|YP_003858750.1| - 0.066 13.0 0.3 2.6 7.9 0.1 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|305662462|ref|YP_003858750.1| - 0.11 12.3 0.0 2.2 8.2 0.1 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.20 gi|305662462|ref|YP_003858750.1| - 0.12 12.7 0.8 5.7 7.4 0.0 3.2 3 0 0 3 3 3 0 Transcriptional regulator HTH_3 PF01381.22 gi|305662462|ref|YP_003858750.1| - 0.19 11.8 1.0 1.7 8.8 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix RNA_pol_Rpc34 PF05158.12 gi|305662463|ref|YP_003858751.1| - 0.00029 20.3 1.5 0.17 11.3 0.3 2.1 1 1 0 2 2 2 2 RNA polymerase Rpc34 subunit WW_1 PF18507.1 gi|305662463|ref|YP_003858751.1| - 0.6 9.9 1.7 5.2 6.8 0.1 2.7 3 0 0 3 3 3 0 WW domain TRM PF02005.16 gi|305662464|ref|YP_003858752.1| - 3.2e-84 283.3 0.2 3.8e-84 283.0 0.2 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|305662464|ref|YP_003858752.1| - 1.6e-05 24.8 0.2 3.3e-05 23.7 0.2 1.5 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|305662464|ref|YP_003858752.1| - 0.00031 20.6 0.0 0.00058 19.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|305662464|ref|YP_003858752.1| - 0.0024 17.4 0.1 0.0039 16.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Zn-ribbon_8 PF09723.10 gi|305662464|ref|YP_003858752.1| - 0.0026 17.8 0.4 0.0051 16.9 0.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|305662464|ref|YP_003858752.1| - 0.012 15.5 0.5 2.3 8.2 0.1 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain 3H PF02829.14 gi|305662464|ref|YP_003858752.1| - 0.013 15.8 0.0 0.039 14.2 0.0 1.8 1 0 0 1 1 1 0 3H domain Cons_hypoth95 PF03602.15 gi|305662464|ref|YP_003858752.1| - 0.037 13.7 0.0 0.057 13.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 zf-ribbon_3 PF13248.6 gi|305662464|ref|YP_003858752.1| - 1.2 8.6 3.8 0.31 10.5 0.2 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|305662464|ref|YP_003858752.1| - 4.4 7.1 5.0 23 4.9 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain RecR PF02132.15 gi|305662464|ref|YP_003858752.1| - 5.4 6.7 5.6 20 4.8 4.3 2.4 1 1 1 2 2 2 0 RecR protein NTPase_1 PF03266.15 gi|305662465|ref|YP_003858753.1| - 5.7e-44 150.0 0.1 6.6e-44 149.8 0.1 1.0 1 0 0 1 1 1 1 NTPase MMR_HSR1 PF01926.23 gi|305662465|ref|YP_003858753.1| - 0.00024 21.2 0.0 0.001 19.1 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|305662465|ref|YP_003858753.1| - 0.00024 21.4 0.0 0.0008 19.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|305662465|ref|YP_003858753.1| - 0.00054 19.9 0.4 0.00087 19.3 0.4 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|305662465|ref|YP_003858753.1| - 0.0008 20.0 0.0 0.0014 19.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|305662465|ref|YP_003858753.1| - 0.0013 17.7 0.1 0.002 17.2 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|305662465|ref|YP_003858753.1| - 0.004 17.6 0.0 0.012 16.1 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|305662465|ref|YP_003858753.1| - 0.0042 17.0 0.0 0.0071 16.3 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.6 gi|305662465|ref|YP_003858753.1| - 0.0065 16.9 0.3 0.28 11.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|305662465|ref|YP_003858753.1| - 0.0067 16.2 0.0 0.011 15.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|305662465|ref|YP_003858753.1| - 0.02 15.2 0.1 0.12 12.7 0.1 2.2 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|305662465|ref|YP_003858753.1| - 0.021 14.3 0.1 0.1 12.0 0.0 2.0 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RsgA_GTPase PF03193.16 gi|305662465|ref|YP_003858753.1| - 0.031 14.2 0.1 0.06 13.2 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|305662465|ref|YP_003858753.1| - 0.033 14.6 0.0 0.048 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 gi|305662465|ref|YP_003858753.1| - 0.033 13.4 1.3 0.035 13.3 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain CBS PF00571.28 gi|305662465|ref|YP_003858753.1| - 0.039 14.4 0.1 1.6 9.2 0.0 2.4 2 0 0 2 2 2 0 CBS domain ParA PF10609.9 gi|305662465|ref|YP_003858753.1| - 0.04 13.4 0.0 0.071 12.6 0.0 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_5 PF07728.14 gi|305662465|ref|YP_003858753.1| - 0.053 13.5 0.1 0.67 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|305662465|ref|YP_003858753.1| - 0.063 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|305662465|ref|YP_003858753.1| - 0.075 13.4 0.0 0.18 12.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase FeoB_N PF02421.18 gi|305662465|ref|YP_003858753.1| - 0.088 12.3 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 Ferrous iron transport protein B DUF2075 PF09848.9 gi|305662465|ref|YP_003858753.1| - 0.096 11.9 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 gi|305662465|ref|YP_003858753.1| - 0.1 13.1 0.1 0.4 11.2 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_33 PF13671.6 gi|305662465|ref|YP_003858753.1| - 0.11 12.7 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|305662465|ref|YP_003858753.1| - 0.14 11.7 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|305662465|ref|YP_003858753.1| - 0.18 11.6 0.0 0.34 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain HTH_19 PF12844.7 gi|305662466|ref|YP_003858754.1| - 1.3e-08 34.7 1.2 3.7e-08 33.3 0.3 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|305662466|ref|YP_003858754.1| - 2.1e-07 30.9 3.0 2.9e-07 30.5 0.0 2.8 4 0 0 4 4 4 1 Helix-turn-helix HTH_31 PF13560.6 gi|305662466|ref|YP_003858754.1| - 5.6e-05 23.4 0.0 0.00021 21.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|305662466|ref|YP_003858754.1| - 0.0028 17.5 0.4 0.0081 16.0 0.4 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|305662466|ref|YP_003858754.1| - 0.0042 17.5 0.0 0.017 15.6 0.0 2.1 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain MerR PF00376.23 gi|305662466|ref|YP_003858754.1| - 0.028 14.2 0.0 0.16 11.8 0.0 2.3 2 0 0 2 2 2 0 MerR family regulatory protein NUMOD1 PF07453.13 gi|305662466|ref|YP_003858754.1| - 0.03 14.6 1.8 7.4 7.0 0.6 3.2 2 0 0 2 2 2 0 NUMOD1 domain LAGLIDADG_3 PF14528.6 gi|305662466|ref|YP_003858754.1| - 0.063 13.6 0.9 0.29 11.5 0.3 2.4 2 0 0 2 2 2 0 LAGLIDADG-like domain Svf1_C PF17187.4 gi|305662466|ref|YP_003858754.1| - 0.42 10.4 2.7 1.3 8.8 0.2 2.6 2 1 0 3 3 3 0 Svf1-like C-terminal lipocalin-like domain Fibrillarin PF01269.17 gi|305662467|ref|YP_003858755.1| - 7.6e-105 349.0 0.1 8.7e-105 348.8 0.1 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|305662467|ref|YP_003858755.1| - 0.0014 18.4 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|305662467|ref|YP_003858755.1| - 0.005 16.5 0.0 0.012 15.3 0.0 1.7 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Nop PF01798.18 gi|305662468|ref|YP_003858756.1| - 4.3e-71 239.0 0.0 6.4e-71 238.5 0.0 1.3 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin DUF3215 PF11503.8 gi|305662468|ref|YP_003858756.1| - 0.14 12.0 0.9 0.23 11.3 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3215) Ribosomal_S30 PF04758.14 gi|305662469|ref|YP_003858757.1| - 1.6e-10 41.0 0.7 2.1e-10 40.6 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S30 GatB_N PF02934.15 gi|305662470|ref|YP_003858758.1| - 1.4e-70 237.8 0.0 2.8e-70 236.8 0.0 1.5 1 1 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|305662470|ref|YP_003858758.1| - 6.5e-19 68.3 1.7 1.4e-18 67.2 1.7 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|305662470|ref|YP_003858758.1| - 1.7e-13 50.6 0.0 6.1e-13 48.8 0.0 2.1 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|305662470|ref|YP_003858758.1| - 7.7e-06 26.0 0.3 2e-05 24.7 0.3 1.7 1 0 0 1 1 1 1 Yqey-like protein HTH_9 PF08221.11 gi|305662470|ref|YP_003858758.1| - 0.04 14.0 0.0 0.14 12.2 0.0 1.9 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TYW3 PF02676.14 gi|305662471|ref|YP_003858759.1| - 1.6e-29 102.8 0.0 2.9e-29 102.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase TYW3 PhoH PF02562.16 gi|305662472|ref|YP_003858760.1| - 3.8e-43 147.3 0.0 5.2e-43 146.9 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|305662472|ref|YP_003858760.1| - 2.7e-11 43.2 1.3 5.3e-08 32.6 0.2 2.7 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|305662472|ref|YP_003858760.1| - 5.2e-07 29.7 3.4 0.0023 17.9 0.0 3.3 4 0 0 4 4 4 2 NusA-like KH domain KH_1 PF00013.29 gi|305662472|ref|YP_003858760.1| - 0.0027 17.5 0.9 0.29 11.0 0.2 2.7 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|305662472|ref|YP_003858760.1| - 0.021 14.7 0.0 2.9 7.8 0.0 2.6 2 0 0 2 2 2 0 KH domain IstB_IS21 PF01695.17 gi|305662472|ref|YP_003858760.1| - 0.026 14.3 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ATPase PF06745.13 gi|305662472|ref|YP_003858760.1| - 0.043 13.2 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 KaiC ResIII PF04851.15 gi|305662472|ref|YP_003858760.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DNA_primase_lrg PF04104.14 gi|305662475|ref|YP_003858763.1| - 8.2e-28 97.5 0.0 3.8e-27 95.4 0.0 2.0 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit GMP_synt_C PF00958.22 gi|305662475|ref|YP_003858763.1| - 0.14 12.2 0.1 0.43 10.6 0.1 1.8 1 0 0 1 1 1 0 GMP synthase C terminal domain Cas_DxTHG PF09455.10 gi|305662475|ref|YP_003858763.1| - 6.4 6.3 7.1 13 5.3 1.4 2.1 1 1 1 2 2 2 0 CRISPR-associated (Cas) DxTHG family PCNA_N PF00705.18 gi|305662476|ref|YP_003858764.1| - 9.1e-15 54.5 0.3 3.6e-14 52.6 0.1 1.9 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|305662476|ref|YP_003858764.1| - 2.7e-05 24.3 2.9 0.049 13.8 0.2 3.3 2 1 1 3 3 3 3 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|305662476|ref|YP_003858764.1| - 2.7e-05 23.7 0.1 6.4e-05 22.5 0.1 1.6 1 1 0 1 1 1 1 Rad9 Rad1 PF02144.16 gi|305662476|ref|YP_003858764.1| - 3.4e-05 23.1 1.7 0.2 10.7 0.0 2.7 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 TF_Zn_Ribbon PF08271.12 gi|305662477|ref|YP_003858765.1| - 1.2e-09 37.6 1.4 2.2e-09 36.7 1.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|305662477|ref|YP_003858765.1| - 0.001 18.7 1.1 0.0016 18.1 1.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|305662477|ref|YP_003858765.1| - 0.0059 16.3 3.0 0.01 15.5 3.0 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain RPA_interact_C PF14768.6 gi|305662477|ref|YP_003858765.1| - 0.074 13.6 0.0 0.12 12.9 0.0 1.5 1 1 0 1 1 1 0 Replication protein A interacting C-terminal Lar_restr_allev PF14354.6 gi|305662477|ref|YP_003858765.1| - 0.097 13.1 0.4 0.19 12.1 0.4 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|305662477|ref|YP_003858765.1| - 0.19 11.2 1.1 5.9 6.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_9 PF13901.6 gi|305662477|ref|YP_003858765.1| - 0.36 10.8 1.9 0.44 10.5 0.7 1.7 2 0 0 2 2 2 0 Putative zinc-RING and/or ribbon eIF-5_eIF-2B PF01873.17 gi|305662477|ref|YP_003858765.1| - 0.39 10.6 2.2 0.79 9.6 0.9 2.2 2 0 0 2 2 2 0 Domain found in IF2B/IF5 Metallophos_2 PF12850.7 gi|305662479|ref|YP_003858767.1| - 8.5e-30 104.1 0.1 9.7e-30 103.9 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|305662479|ref|YP_003858767.1| - 2.3e-11 44.6 1.0 1.2e-08 35.7 0.1 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|305662479|ref|YP_003858767.1| - 8.4e-07 28.6 0.1 0.022 14.1 0.0 2.3 1 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily LSM PF01423.22 gi|305662480|ref|YP_003858768.1| - 1e-21 76.4 0.1 1.1e-21 76.2 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|305662480|ref|YP_003858768.1| - 0.018 15.2 0.0 0.023 14.9 0.0 1.3 1 1 0 1 1 1 0 Ataxin 2 SM domain DUF150_C PF17384.2 gi|305662480|ref|YP_003858768.1| - 0.085 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 RimP C-terminal SH3 domain Ribosomal_L37e PF01907.19 gi|305662481|ref|YP_003858769.1| - 8.8e-26 89.8 8.2 9.8e-26 89.7 8.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DUF2752 PF10825.8 gi|305662481|ref|YP_003858769.1| - 0.024 14.7 0.6 2.3 8.3 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) MraY_sig1 PF10555.9 gi|305662481|ref|YP_003858769.1| - 0.28 10.8 1.3 0.41 10.3 1.3 1.3 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RTC PF01137.21 gi|305662482|ref|YP_003858770.1| - 3.7e-78 261.8 0.0 4.2e-78 261.6 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|305662482|ref|YP_003858770.1| - 5.9e-23 81.4 0.0 1.1e-22 80.5 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_like PF01467.26 gi|305662483|ref|YP_003858771.1| - 2e-16 60.4 0.0 7.4e-16 58.6 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase-like ATP-sulfurylase PF01747.17 gi|305662483|ref|YP_003858771.1| - 0.071 12.6 0.0 6.8 6.1 0.0 2.2 2 0 0 2 2 2 0 ATP-sulfurylase Exonuc_VII_S PF02609.16 gi|305662484|ref|YP_003858772.1| - 0.015 15.4 1.4 14 5.8 0.4 3.6 4 0 0 4 4 4 0 Exonuclease VII small subunit Pfg27 PF09216.10 gi|305662484|ref|YP_003858772.1| - 0.089 12.6 1.6 0.25 11.1 0.5 2.0 1 1 1 2 2 2 0 Pfg27 DUF349 PF03993.12 gi|305662484|ref|YP_003858772.1| - 0.46 10.8 5.8 19 5.6 0.3 3.2 3 0 0 3 3 3 0 Domain of Unknown Function (DUF349) MG2 PF01835.19 gi|305662486|ref|YP_003858774.1| - 0.0065 16.9 0.7 8 7.0 0.0 5.4 7 1 0 7 7 7 1 MG2 domain Big_8 PF17961.1 gi|305662486|ref|YP_003858774.1| - 0.25 11.5 4.1 2.4 8.4 0.0 3.5 3 1 1 4 4 4 0 Bacterial Ig domain Filamin PF00630.19 gi|305662486|ref|YP_003858774.1| - 0.31 11.9 3.7 11 6.8 0.0 4.5 4 2 0 4 4 4 0 Filamin/ABP280 repeat DUF1664 PF07889.12 gi|305662487|ref|YP_003858775.1| - 2.9e-16 59.6 16.4 3.6e-06 27.0 0.8 4.2 1 1 3 4 4 4 4 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|305662487|ref|YP_003858775.1| - 2.4e-13 50.3 31.6 0.00053 20.4 3.2 5.9 1 1 5 6 6 6 5 Nucleopolyhedrovirus P10 protein CarboxypepD_reg PF13620.6 gi|305662487|ref|YP_003858775.1| - 2.9e-12 46.7 15.8 8.4e-12 45.2 8.6 2.9 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain Baculo_PEP_C PF04513.12 gi|305662487|ref|YP_003858775.1| - 8.9e-12 45.2 30.0 3.1e-06 27.3 16.7 3.1 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus DUF5082 PF16888.5 gi|305662487|ref|YP_003858775.1| - 4.3e-11 43.2 8.2 4.9e-07 30.0 0.9 3.4 2 2 1 3 3 3 2 Domain of unknown function (DUF5082) FlaC_arch PF05377.11 gi|305662487|ref|YP_003858775.1| - 1.3e-10 41.5 16.9 0.0059 17.0 0.2 5.6 2 1 3 6 6 5 2 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.9 gi|305662487|ref|YP_003858775.1| - 2.2e-10 40.7 9.7 0.0013 19.0 2.9 3.3 2 1 1 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 CarbopepD_reg_2 PF13715.6 gi|305662487|ref|YP_003858775.1| - 4.6e-10 39.4 5.8 4.9e-10 39.3 3.6 2.3 2 0 0 2 2 1 1 CarboxypepD_reg-like domain Prominin PF05478.11 gi|305662487|ref|YP_003858775.1| - 2.4e-09 35.7 10.2 5.4e-09 34.6 10.2 1.5 1 1 0 1 1 1 1 Prominin Apolipoprotein PF01442.18 gi|305662487|ref|YP_003858775.1| - 2.7e-09 37.2 0.0 3.4e-06 27.0 0.0 2.2 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain EMP24_GP25L PF01105.24 gi|305662487|ref|YP_003858775.1| - 5.9e-09 36.1 2.3 0.00088 19.3 0.0 4.6 1 1 1 2 2 2 1 emp24/gp25L/p24 family/GOLD DUF16 PF01519.16 gi|305662487|ref|YP_003858775.1| - 1.1e-08 35.5 6.6 0.0043 17.5 0.2 4.0 1 1 2 3 3 3 2 Protein of unknown function DUF16 EzrA PF06160.12 gi|305662487|ref|YP_003858775.1| - 1.3e-08 33.5 5.4 1.8e-07 29.7 5.1 2.0 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Laminin_II PF06009.12 gi|305662487|ref|YP_003858775.1| - 1.4e-08 34.9 22.7 4.4e-05 23.5 4.5 3.3 1 1 2 3 3 3 3 Laminin Domain II MG2 PF01835.19 gi|305662487|ref|YP_003858775.1| - 3.1e-08 34.0 0.1 1.8e-07 31.5 0.0 2.4 1 1 1 2 2 1 1 MG2 domain DUF948 PF06103.11 gi|305662487|ref|YP_003858775.1| - 5.6e-08 32.9 25.6 5.1e-05 23.5 4.9 4.6 4 2 2 6 6 4 3 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 gi|305662487|ref|YP_003858775.1| - 6.2e-08 31.9 1.3 5.8e-05 22.1 1.0 2.1 1 1 1 2 2 2 1 Spc7 kinetochore protein AAA_13 PF13166.6 gi|305662487|ref|YP_003858775.1| - 9.1e-08 31.2 8.9 0.00024 19.9 0.7 2.1 1 1 1 2 2 2 2 AAA domain Sec34 PF04136.15 gi|305662487|ref|YP_003858775.1| - 2e-07 31.0 3.3 0.0039 17.1 1.5 3.4 1 1 2 3 3 3 2 Sec34-like family XhlA PF10779.9 gi|305662487|ref|YP_003858775.1| - 4e-07 30.1 17.6 0.0056 16.8 0.5 5.4 1 1 3 5 5 5 1 Haemolysin XhlA HSBP1 PF06825.12 gi|305662487|ref|YP_003858775.1| - 4.3e-07 29.7 6.4 1.8 8.5 0.0 7.2 1 1 6 7 7 6 0 Heat shock factor binding protein 1 COG2 PF06148.11 gi|305662487|ref|YP_003858775.1| - 5.1e-07 29.8 9.4 0.37 10.9 1.1 4.4 1 1 4 5 5 5 1 COG (conserved oligomeric Golgi) complex component, COG2 DUF4795 PF16043.5 gi|305662487|ref|YP_003858775.1| - 6.3e-07 29.2 1.1 2.4e-06 27.3 1.1 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4795) IFT57 PF10498.9 gi|305662487|ref|YP_003858775.1| - 1.2e-06 27.8 2.5 0.0011 18.0 1.2 2.8 1 1 2 3 3 3 3 Intra-flagellar transport protein 57 TMF_TATA_bd PF12325.8 gi|305662487|ref|YP_003858775.1| - 1.3e-06 28.6 0.0 0.15 12.3 0.3 3.2 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding Seryl_tRNA_N PF02403.22 gi|305662487|ref|YP_003858775.1| - 1.8e-06 28.1 7.7 0.001 19.3 3.4 3.0 1 1 2 3 3 3 1 Seryl-tRNA synthetase N-terminal domain Prefoldin PF02996.17 gi|305662487|ref|YP_003858775.1| - 2.2e-06 27.6 2.4 0.27 11.2 0.1 4.2 2 1 1 4 4 4 2 Prefoldin subunit T3SSipB PF16535.5 gi|305662487|ref|YP_003858775.1| - 2.2e-06 28.3 10.2 0.00076 20.0 5.0 3.2 1 1 1 2 2 2 1 Type III cell invasion protein SipB Snapin_Pallidin PF14712.6 gi|305662487|ref|YP_003858775.1| - 2.9e-06 27.6 3.0 0.058 13.8 1.1 3.4 1 1 4 5 5 5 1 Snapin/Pallidin TMPIT PF07851.13 gi|305662487|ref|YP_003858775.1| - 3.3e-06 26.6 1.3 0.00097 18.5 0.6 2.4 1 1 1 2 2 2 1 TMPIT-like protein Matrilin_ccoil PF10393.9 gi|305662487|ref|YP_003858775.1| - 5.2e-06 26.2 6.3 2.6 8.0 0.0 6.5 6 1 1 7 7 6 0 Trimeric coiled-coil oligomerisation domain of matrilin Fer4_24 PF18109.1 gi|305662487|ref|YP_003858775.1| - 1e-05 25.7 20.7 0.33 11.3 0.1 7.9 6 3 3 9 9 6 1 Ferredoxin I 4Fe-4S cluster domain DUF3450 PF11932.8 gi|305662487|ref|YP_003858775.1| - 1.2e-05 24.8 0.6 0.054 12.8 0.5 2.7 1 1 0 2 2 2 1 Protein of unknown function (DUF3450) CdvA PF18822.1 gi|305662487|ref|YP_003858775.1| - 1.2e-05 25.1 2.3 9.5 6.1 0.0 4.8 2 1 1 4 4 3 0 CdvA-like coiled-coil domain Filament PF00038.21 gi|305662487|ref|YP_003858775.1| - 1.2e-05 25.0 0.1 2.9e-05 23.8 0.1 1.5 1 1 0 1 1 1 1 Intermediate filament protein GAS PF13851.6 gi|305662487|ref|YP_003858775.1| - 1.3e-05 24.6 0.0 5.4e-05 22.6 0.0 2.0 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding HrpB7 PF09486.10 gi|305662487|ref|YP_003858775.1| - 1.5e-05 25.4 0.1 0.11 12.9 0.2 2.5 1 1 0 2 2 2 1 Bacterial type III secretion protein (HrpB7) ADIP PF11559.8 gi|305662487|ref|YP_003858775.1| - 1.5e-05 25.1 1.2 0.39 10.8 0.1 3.3 2 1 1 3 3 3 1 Afadin- and alpha -actinin-Binding RmuC PF02646.16 gi|305662487|ref|YP_003858775.1| - 1.7e-05 24.1 8.0 0.11 11.6 0.1 3.5 1 1 3 4 4 4 1 RmuC family LPP PF04728.13 gi|305662487|ref|YP_003858775.1| - 1.7e-05 25.1 31.1 0.55 10.7 0.7 7.1 1 1 5 6 6 6 2 Lipoprotein leucine-zipper Fib_alpha PF08702.10 gi|305662487|ref|YP_003858775.1| - 1.7e-05 25.0 12.3 0.0064 16.7 6.0 3.0 1 1 2 3 3 3 2 Fibrinogen alpha/beta chain family PTRF_SDPR PF15237.6 gi|305662487|ref|YP_003858775.1| - 2e-05 24.4 6.7 0.0021 17.7 1.9 2.5 1 1 1 2 2 2 1 PTRF/SDPR family Nup54 PF13874.6 gi|305662487|ref|YP_003858775.1| - 2.4e-05 24.4 0.1 0.0011 19.0 0.1 2.6 1 1 0 1 1 1 1 Nucleoporin complex subunit 54 Tropomyosin PF00261.20 gi|305662487|ref|YP_003858775.1| - 2.5e-05 23.8 0.4 0.0023 17.4 0.3 2.4 1 1 0 2 2 2 1 Tropomyosin Tektin PF03148.14 gi|305662487|ref|YP_003858775.1| - 3.3e-05 22.8 0.3 0.00065 18.6 0.1 2.4 1 1 1 2 2 2 1 Tektin family ATG16 PF08614.11 gi|305662487|ref|YP_003858775.1| - 3.3e-05 24.2 0.5 0.0014 18.9 0.4 2.5 2 1 0 2 2 2 1 Autophagy protein 16 (ATG16) CENP-F_leu_zip PF10473.9 gi|305662487|ref|YP_003858775.1| - 3.5e-05 23.9 0.1 0.045 13.8 0.5 3.0 1 1 2 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Nup88 PF10168.9 gi|305662487|ref|YP_003858775.1| - 3.5e-05 21.8 0.4 0.033 12.0 0.9 2.2 1 1 1 2 2 2 2 Nuclear pore component PspA_IM30 PF04012.12 gi|305662487|ref|YP_003858775.1| - 3.7e-05 23.4 1.6 0.00048 19.8 0.8 2.4 1 1 1 2 2 2 1 PspA/IM30 family SHE3 PF17078.5 gi|305662487|ref|YP_003858775.1| - 3.9e-05 23.5 4.8 0.0022 17.8 2.1 2.7 1 1 1 2 2 2 2 SWI5-dependent HO expression protein 3 BRE1 PF08647.11 gi|305662487|ref|YP_003858775.1| - 4.8e-05 23.3 1.8 0.002 18.2 1.6 2.4 2 0 0 2 2 2 1 BRE1 E3 ubiquitin ligase CCDC154 PF15450.6 gi|305662487|ref|YP_003858775.1| - 7.2e-05 21.5 0.2 0.0036 15.9 0.1 2.1 1 1 1 2 2 2 1 Coiled-coil domain-containing protein 154 CLZ PF16526.5 gi|305662487|ref|YP_003858775.1| - 7.7e-05 23.0 0.1 3.5 8.1 0.1 4.4 1 1 4 5 5 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Tropomyosin_1 PF12718.7 gi|305662487|ref|YP_003858775.1| - 8.7e-05 22.7 0.2 0.027 14.6 0.2 3.0 1 1 1 2 2 2 1 Tropomyosin like Collagen_mid PF15984.5 gi|305662487|ref|YP_003858775.1| - 9.4e-05 22.2 36.6 9.7e-05 22.2 12.1 3.1 1 1 2 3 3 2 2 Bacterial collagen, middle region Prefoldin_2 PF01920.20 gi|305662487|ref|YP_003858775.1| - 0.00012 22.0 0.1 1.4 9.0 0.2 4.2 2 2 3 5 5 5 0 Prefoldin subunit Fez1 PF06818.15 gi|305662487|ref|YP_003858775.1| - 0.00012 22.6 0.3 0.002 18.6 0.3 2.1 1 1 0 1 1 1 1 Fez1 SKA1 PF07160.12 gi|305662487|ref|YP_003858775.1| - 0.00012 22.0 4.0 0.38 10.6 0.7 3.1 1 1 1 3 3 3 1 Spindle and kinetochore-associated protein 1 DUF3584 PF12128.8 gi|305662487|ref|YP_003858775.1| - 0.00013 19.7 0.1 0.00021 19.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Lebercilin PF15619.6 gi|305662487|ref|YP_003858775.1| - 0.00013 21.6 0.0 0.00035 20.3 0.0 1.6 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Dynamitin PF04912.14 gi|305662487|ref|YP_003858775.1| - 0.00014 21.4 6.9 0.011 15.1 6.5 2.8 1 1 1 2 2 2 1 Dynamitin Syntaxin_2 PF14523.6 gi|305662487|ref|YP_003858775.1| - 0.00014 22.1 16.3 0.094 13.1 0.6 3.4 1 1 2 3 3 3 2 Syntaxin-like protein ApoLp-III PF07464.11 gi|305662487|ref|YP_003858775.1| - 0.00014 21.9 16.4 0.0063 16.6 1.6 2.5 1 1 1 2 2 2 1 Apolipophorin-III precursor (apoLp-III) MCPsignal PF00015.21 gi|305662487|ref|YP_003858775.1| - 0.00015 21.7 27.5 0.066 13.0 6.3 4.2 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain FH2 PF02181.23 gi|305662487|ref|YP_003858775.1| - 0.00016 20.9 0.3 0.16 11.1 0.2 2.3 1 1 0 2 2 2 1 Formin Homology 2 Domain DUF745 PF05335.13 gi|305662487|ref|YP_003858775.1| - 0.00016 21.4 6.2 0.00044 20.0 2.9 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF745) DUF1640 PF07798.11 gi|305662487|ref|YP_003858775.1| - 0.00022 21.3 4.5 0.2 11.7 4.5 3.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1640) DUF4140 PF13600.6 gi|305662487|ref|YP_003858775.1| - 0.00023 21.5 1.8 0.095 13.1 0.1 3.8 1 1 1 3 3 3 1 N-terminal domain of unknown function (DUF4140) TPR_MLP1_2 PF07926.12 gi|305662487|ref|YP_003858775.1| - 0.00023 21.2 0.2 0.014 15.5 0.3 2.7 1 1 2 3 3 3 1 TPR/MLP1/MLP2-like protein TMF_DNA_bd PF12329.8 gi|305662487|ref|YP_003858775.1| - 0.00025 21.0 3.9 0.57 10.2 0.5 3.9 2 2 2 4 4 3 1 TATA element modulatory factor 1 DNA binding COG6 PF06419.11 gi|305662487|ref|YP_003858775.1| - 0.00027 19.3 9.7 0.084 11.1 1.8 3.6 1 1 4 5 5 5 2 Conserved oligomeric complex COG6 Laminin_I PF06008.14 gi|305662487|ref|YP_003858775.1| - 0.00028 20.7 10.0 0.066 12.9 1.4 3.0 1 1 2 3 3 3 1 Laminin Domain I TolA_bind_tri PF16331.5 gi|305662487|ref|YP_003858775.1| - 0.00033 20.7 0.0 0.32 11.1 0.0 3.0 3 0 0 3 3 2 1 TolA binding protein trimerisation Myosin_tail_1 PF01576.19 gi|305662487|ref|YP_003858775.1| - 0.00034 18.6 0.0 0.0005 18.0 0.0 1.1 1 0 0 1 1 1 1 Myosin tail Med9 PF07544.13 gi|305662487|ref|YP_003858775.1| - 0.00035 20.6 1.1 0.086 12.9 0.4 3.3 2 2 1 3 3 2 1 RNA polymerase II transcription mediator complex subunit 9 CCDC144C PF14915.6 gi|305662487|ref|YP_003858775.1| - 0.00038 19.7 0.1 0.00079 18.6 0.1 1.4 1 1 0 1 1 1 1 CCDC144C protein coiled-coil region Ran-binding PF05508.11 gi|305662487|ref|YP_003858775.1| - 0.00038 19.5 11.2 0.021 13.8 0.3 2.2 1 1 1 2 2 2 2 RanGTP-binding protein HsbA PF12296.8 gi|305662487|ref|YP_003858775.1| - 0.00041 20.8 41.8 0.058 13.8 3.7 5.3 1 1 2 5 5 5 1 Hydrophobic surface binding protein A CooC_C PF15976.5 gi|305662487|ref|YP_003858775.1| - 0.00043 20.3 2.0 0.0015 18.5 0.1 2.9 3 0 0 3 3 1 1 CS1-pili formation C-terminal DUF677 PF05055.12 gi|305662487|ref|YP_003858775.1| - 0.00045 19.2 23.3 0.039 12.8 5.4 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF677) PI3K_P85_iSH2 PF16454.5 gi|305662487|ref|YP_003858775.1| - 0.0005 19.7 0.0 0.0033 17.0 0.0 1.9 2 0 0 2 2 2 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain JIP_LZII PF16471.5 gi|305662487|ref|YP_003858775.1| - 0.00051 20.2 3.8 0.39 10.9 0.2 3.5 2 1 1 4 4 2 1 JNK-interacting protein leucine zipper II TRPM_tetra PF16519.5 gi|305662487|ref|YP_003858775.1| - 0.00051 20.1 2.3 7.5 6.7 0.3 4.5 3 1 0 4 4 3 0 Tetramerisation domain of TRPM ABC_tran_CTD PF16326.5 gi|305662487|ref|YP_003858775.1| - 0.00052 20.2 0.0 0.28 11.4 0.0 3.3 2 2 1 3 3 2 1 ABC transporter C-terminal domain DUF812 PF05667.11 gi|305662487|ref|YP_003858775.1| - 0.00054 19.0 1.6 0.025 13.5 1.0 2.4 1 1 2 3 3 3 1 Protein of unknown function (DUF812) WXG100 PF06013.12 gi|305662487|ref|YP_003858775.1| - 0.00055 20.1 3.9 4.6 7.5 0.5 4.8 1 1 3 4 4 4 0 Proteins of 100 residues with WXG SlyX PF04102.12 gi|305662487|ref|YP_003858775.1| - 0.00063 20.3 0.0 1.5 9.5 0.0 3.5 2 2 1 3 3 3 0 SlyX MscS_porin PF12795.7 gi|305662487|ref|YP_003858775.1| - 0.00067 19.3 0.3 0.0023 17.5 0.4 1.7 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain AIP3 PF03915.13 gi|305662487|ref|YP_003858775.1| - 0.00068 18.8 14.9 0.0035 16.5 14.3 2.2 1 1 0 1 1 1 1 Actin interacting protein 3 RPW8 PF05659.11 gi|305662487|ref|YP_003858775.1| - 0.00073 19.2 2.0 4.1 7.1 0.0 3.5 1 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 KxDL PF10241.9 gi|305662487|ref|YP_003858775.1| - 0.00073 19.8 1.1 4.8 7.5 0.0 3.3 1 1 2 3 3 3 0 Uncharacterized conserved protein Fzo_mitofusin PF04799.13 gi|305662487|ref|YP_003858775.1| - 0.00082 19.0 4.6 1.9 8.0 0.1 4.1 1 1 3 4 4 4 0 fzo-like conserved region TBCC_N PF16752.5 gi|305662487|ref|YP_003858775.1| - 0.00092 19.6 1.5 0.52 10.8 0.5 3.3 1 1 1 2 2 2 1 Tubulin-specific chaperone C N-terminal domain HOOK PF05622.12 gi|305662487|ref|YP_003858775.1| - 0.0011 17.3 0.8 0.048 11.8 0.4 2.3 1 1 1 2 2 2 1 HOOK protein HemX PF04375.14 gi|305662487|ref|YP_003858775.1| - 0.0011 18.4 0.5 0.046 13.0 0.5 2.6 1 1 1 2 2 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase Noelin-1 PF12308.8 gi|305662487|ref|YP_003858775.1| - 0.0011 19.0 4.6 2.3 8.2 0.0 3.7 1 1 2 3 3 3 0 Neurogenesis glycoprotein Bacillus_HBL PF05791.11 gi|305662487|ref|YP_003858775.1| - 0.0011 18.9 16.6 0.5 10.2 3.3 4.0 1 1 3 4 4 4 2 Bacillus haemolytic enterotoxin (HBL) DUF4988 PF16378.5 gi|305662487|ref|YP_003858775.1| - 0.0011 18.7 19.7 0.15 11.7 0.6 4.9 1 1 3 4 4 4 2 Domain of unknown function Nmad5 PF18757.1 gi|305662487|ref|YP_003858775.1| - 0.0013 19.0 9.4 1.4 9.1 0.4 4.0 1 1 2 4 4 4 0 Nucleotide modification associated domain 5 YabA PF06156.13 gi|305662487|ref|YP_003858775.1| - 0.0013 19.4 0.5 10 6.8 0.1 3.5 1 1 3 4 4 4 0 Initiation control protein YabA Syntaxin-6_N PF09177.11 gi|305662487|ref|YP_003858775.1| - 0.0013 19.3 6.3 0.59 10.7 1.3 3.4 1 1 2 3 3 3 1 Syntaxin 6, N-terminal HBM PF16591.5 gi|305662487|ref|YP_003858775.1| - 0.0013 18.2 4.1 0.054 12.9 0.1 2.5 2 1 1 3 3 2 2 Helical bimodular sensor domain DNA_repr_REX1B PF14966.6 gi|305662487|ref|YP_003858775.1| - 0.0014 19.2 5.2 0.72 10.6 0.2 4.4 1 1 3 4 4 4 1 DNA repair REX1-B ALIX_LYPXL_bnd PF13949.6 gi|305662487|ref|YP_003858775.1| - 0.0014 18.0 1.2 0.004 16.5 1.2 1.7 1 1 0 1 1 1 1 ALIX V-shaped domain binding to HIV STAT_alpha PF01017.20 gi|305662487|ref|YP_003858775.1| - 0.0015 18.4 0.1 0.0086 16.0 0.1 2.0 2 0 0 2 2 1 1 STAT protein, all-alpha domain T7SS_ESX_EspC PF10824.8 gi|305662487|ref|YP_003858775.1| - 0.0017 18.8 13.3 2.3 8.7 0.2 4.5 1 1 3 4 4 4 0 Excreted virulence factor EspC, type VII ESX diderm Rab5-bind PF09311.11 gi|305662487|ref|YP_003858775.1| - 0.002 17.6 1.4 0.094 12.1 0.5 2.1 1 1 1 2 2 2 1 Rabaptin-like protein LXG PF04740.12 gi|305662487|ref|YP_003858775.1| - 0.0024 17.6 12.4 0.61 9.8 3.8 3.0 1 1 0 2 2 2 1 LXG domain of WXG superfamily HMMR_N PF15905.5 gi|305662487|ref|YP_003858775.1| - 0.0025 17.4 1.4 0.1 12.0 1.9 2.0 1 1 1 2 2 2 1 Hyaluronan mediated motility receptor N-terminal COG5 PF10392.9 gi|305662487|ref|YP_003858775.1| - 0.0027 17.9 6.5 1.5 9.0 0.5 3.9 1 1 3 4 4 4 0 Golgi transport complex subunit 5 Fmp27_WPPW PF10359.9 gi|305662487|ref|YP_003858775.1| - 0.003 16.5 2.1 0.011 14.6 1.0 2.0 1 1 0 2 2 2 1 RNA pol II promoter Fmp27 protein domain DUF2205 PF10224.9 gi|305662487|ref|YP_003858775.1| - 0.0033 17.4 3.6 2.6 8.1 0.3 4.7 2 2 4 6 6 4 0 Short coiled-coil protein DivIC PF04977.15 gi|305662487|ref|YP_003858775.1| - 0.0035 17.1 1.9 0.3 10.9 0.3 3.5 2 1 2 4 4 2 1 Septum formation initiator Atg14 PF10186.9 gi|305662487|ref|YP_003858775.1| - 0.0035 16.5 1.0 0.038 13.1 1.0 2.0 1 1 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 CorA PF01544.18 gi|305662487|ref|YP_003858775.1| - 0.0036 16.7 4.1 0.007 15.7 1.5 2.2 1 1 1 2 2 2 1 CorA-like Mg2+ transporter protein APG17 PF04108.12 gi|305662487|ref|YP_003858775.1| - 0.0037 16.4 5.1 0.077 12.1 1.1 2.7 1 1 1 2 2 2 2 Autophagy protein Apg17 MIS13 PF08202.11 gi|305662487|ref|YP_003858775.1| - 0.0039 16.5 7.9 0.026 13.8 3.5 2.8 1 1 1 2 2 2 1 Mis12-Mtw1 protein family WEMBL PF05701.11 gi|305662487|ref|YP_003858775.1| - 0.0043 15.8 6.4 0.0055 15.5 3.5 1.5 1 1 0 1 1 1 1 Weak chloroplast movement under blue light SKA2 PF16740.5 gi|305662487|ref|YP_003858775.1| - 0.0043 16.8 1.0 15 5.4 0.5 3.5 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 2 DHR10 PF18595.1 gi|305662487|ref|YP_003858775.1| - 0.0044 17.1 0.1 0.33 11.0 0.4 2.3 1 1 0 2 2 2 1 Designed helical repeat protein 10 domain MIP-T3_C PF17749.1 gi|305662487|ref|YP_003858775.1| - 0.0048 16.9 2.4 1.6 8.7 1.8 3.0 1 1 2 3 3 3 0 Microtubule-binding protein MIP-T3 C-terminal region DASH_Dad2 PF08654.10 gi|305662487|ref|YP_003858775.1| - 0.0049 17.3 13.9 1.1 9.7 1.6 4.1 1 1 2 3 3 3 0 DASH complex subunit Dad2 Rx_N PF18052.1 gi|305662487|ref|YP_003858775.1| - 0.0059 16.9 0.7 12 6.3 0.0 3.0 2 1 1 3 3 3 0 Rx N-terminal domain CALCOCO1 PF07888.11 gi|305662487|ref|YP_003858775.1| - 0.0067 15.4 0.2 0.038 12.9 0.2 1.8 1 1 1 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like Cast PF10174.9 gi|305662487|ref|YP_003858775.1| - 0.0069 14.7 7.4 0.02 13.2 7.4 1.5 1 1 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone DUF2730 PF10805.8 gi|305662487|ref|YP_003858775.1| - 0.0076 16.3 9.3 0.42 10.7 0.2 4.5 2 1 3 5 5 4 1 Protein of unknown function (DUF2730) DUF4618 PF15397.6 gi|305662487|ref|YP_003858775.1| - 0.0076 15.7 1.5 0.34 10.3 0.9 2.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4618) Sec3_C PF09763.9 gi|305662487|ref|YP_003858775.1| - 0.0077 14.7 5.1 0.18 10.1 1.0 2.8 1 1 3 4 4 4 1 Exocyst complex component Sec3 DegS PF05384.11 gi|305662487|ref|YP_003858775.1| - 0.0079 15.7 3.3 11 5.5 0.0 3.7 1 1 0 2 2 2 0 Sensor protein DegS Phage_GPO PF05929.11 gi|305662487|ref|YP_003858775.1| - 0.008 15.8 4.9 2.9 7.5 1.4 2.9 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase KASH_CCD PF14662.6 gi|305662487|ref|YP_003858775.1| - 0.009 15.9 0.2 0.015 15.2 0.2 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Not3 PF04065.15 gi|305662487|ref|YP_003858775.1| - 0.0096 15.4 3.9 0.073 12.5 2.1 2.4 1 1 2 3 3 3 1 Not1 N-terminal domain, CCR4-Not complex component DUF148 PF02520.17 gi|305662487|ref|YP_003858775.1| - 0.01 15.9 15.4 0.064 13.4 0.1 4.0 2 1 2 4 4 4 0 Domain of unknown function DUF148 Syntaxin PF00804.25 gi|305662487|ref|YP_003858775.1| - 0.013 15.2 9.3 2.1 8.0 4.3 3.0 1 1 2 3 3 3 0 Syntaxin FmiP_Thoc5 PF09766.9 gi|305662487|ref|YP_003858775.1| - 0.014 14.7 1.4 0.35 10.1 0.1 2.8 1 1 1 3 3 2 0 Fms-interacting protein/Thoc5 Transcrip_act PF04949.13 gi|305662487|ref|YP_003858775.1| - 0.014 15.3 2.4 18 5.2 0.0 3.5 1 1 3 4 4 4 0 Transcriptional activator DUF2203 PF09969.9 gi|305662487|ref|YP_003858775.1| - 0.015 16.0 1.0 1.8 9.3 0.2 2.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF3130 PF11328.8 gi|305662487|ref|YP_003858775.1| - 0.016 15.4 2.1 0.016 15.4 2.1 3.6 1 1 3 4 4 1 0 Protein of unknown function (DUF3130 DUF4164 PF13747.6 gi|305662487|ref|YP_003858775.1| - 0.017 15.4 2.8 3.9 7.8 1.6 3.6 1 1 3 4 4 3 0 Domain of unknown function (DUF4164) BORCS6 PF10157.9 gi|305662487|ref|YP_003858775.1| - 0.019 15.2 22.3 2.1 8.6 3.4 4.3 1 1 3 4 4 4 0 BLOC-1-related complex sub-unit 6 ApoO PF09769.9 gi|305662487|ref|YP_003858775.1| - 0.019 14.9 3.0 9.6 6.2 0.5 4.1 1 1 1 2 2 2 0 Apolipoprotein O Vps51 PF08700.11 gi|305662487|ref|YP_003858775.1| - 0.019 15.0 7.5 34 4.6 3.5 4.9 2 2 1 3 3 3 0 Vps51/Vps67 DUF724 PF05266.14 gi|305662487|ref|YP_003858775.1| - 0.02 14.7 1.3 0.21 11.4 0.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Leu_zip PF15294.6 gi|305662487|ref|YP_003858775.1| - 0.02 14.4 5.1 0.18 11.3 2.4 2.1 1 1 1 2 2 2 0 Leucine zipper BAR_3 PF16746.5 gi|305662487|ref|YP_003858775.1| - 0.023 14.4 1.6 1.9 8.1 0.4 2.6 1 1 3 4 4 4 0 BAR domain of APPL family Muted PF14942.6 gi|305662487|ref|YP_003858775.1| - 0.023 15.0 3.9 6.4 7.1 2.5 3.4 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein MAD PF05557.13 gi|305662487|ref|YP_003858775.1| - 0.029 12.8 0.1 0.042 12.2 0.1 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein Occludin_ELL PF07303.13 gi|305662487|ref|YP_003858775.1| - 0.029 15.1 0.1 1.7 9.4 0.1 3.1 1 1 2 3 3 2 0 Occludin homology domain Phage_Mu_Gam PF07352.12 gi|305662487|ref|YP_003858775.1| - 0.03 14.3 0.1 15 5.5 0.0 3.1 1 1 2 3 3 2 0 Bacteriophage Mu Gam like protein Vps53_N PF04100.12 gi|305662487|ref|YP_003858775.1| - 0.031 13.3 14.5 0.11 11.5 5.2 2.3 1 1 1 2 2 2 0 Vps53-like, N-terminal Cortex-I_coil PF09304.10 gi|305662487|ref|YP_003858775.1| - 0.034 14.3 4.5 2.5 8.3 1.1 3.0 1 1 2 3 3 3 0 Cortexillin I, coiled coil V_ATPase_I PF01496.19 gi|305662487|ref|YP_003858775.1| - 0.035 12.0 3.1 0.36 8.7 1.0 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Vps5 PF09325.10 gi|305662487|ref|YP_003858775.1| - 0.036 13.6 6.2 3.2 7.2 0.9 2.8 1 1 2 3 3 3 0 Vps5 C terminal like Med21 PF11221.8 gi|305662487|ref|YP_003858775.1| - 0.037 14.3 0.1 0.21 11.8 0.2 2.2 2 2 0 2 2 1 0 Subunit 21 of Mediator complex MitMem_reg PF13012.6 gi|305662487|ref|YP_003858775.1| - 0.038 14.4 4.8 4.1 7.8 4.8 3.0 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function Arfaptin PF06456.13 gi|305662487|ref|YP_003858775.1| - 0.038 13.5 1.3 1.3 8.5 0.3 2.3 1 1 1 2 2 2 0 Arfaptin-like domain TMP_2 PF06791.13 gi|305662487|ref|YP_003858775.1| - 0.04 13.6 11.5 0.054 13.2 3.0 3.0 1 1 3 4 4 4 0 Prophage tail length tape measure protein Med4 PF10018.9 gi|305662487|ref|YP_003858775.1| - 0.046 13.4 2.0 0.28 10.8 0.8 2.6 2 1 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Vps23_core PF09454.10 gi|305662487|ref|YP_003858775.1| - 0.047 13.6 1.5 4.8 7.2 0.1 3.3 2 1 1 3 3 2 0 Vps23 core domain ATP-synt_D PF01813.17 gi|305662487|ref|YP_003858775.1| - 0.049 13.5 2.0 1.6 8.6 0.1 2.6 2 1 0 2 2 2 0 ATP synthase subunit D GrpE PF01025.19 gi|305662487|ref|YP_003858775.1| - 0.051 13.2 1.8 0.11 12.2 1.3 1.7 1 1 0 1 1 1 0 GrpE UPF0184 PF03670.13 gi|305662487|ref|YP_003858775.1| - 0.051 14.0 12.4 2 8.9 0.1 4.8 1 1 5 6 6 5 0 Uncharacterised protein family (UPF0184) HAUS-augmin3 PF14932.6 gi|305662487|ref|YP_003858775.1| - 0.052 13.1 0.1 0.29 10.7 0.1 1.9 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 TACC_C PF05010.14 gi|305662487|ref|YP_003858775.1| - 0.053 13.3 0.1 1.7 8.4 0.1 2.3 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Mod_r PF07200.13 gi|305662487|ref|YP_003858775.1| - 0.059 13.5 0.1 0.19 11.8 0.2 1.7 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Prefoldin_3 PF13758.6 gi|305662487|ref|YP_003858775.1| - 0.06 13.4 4.1 5 7.2 0.6 4.1 1 1 1 3 3 3 0 Prefoldin subunit DUF2120 PF09893.9 gi|305662487|ref|YP_003858775.1| - 0.061 13.4 5.5 0.43 10.7 0.2 2.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) Mce4_CUP1 PF11887.8 gi|305662487|ref|YP_003858775.1| - 0.062 12.7 15.5 0.22 11.0 5.3 2.3 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative P4Ha_N PF08336.11 gi|305662487|ref|YP_003858775.1| - 0.067 13.2 0.4 16 5.5 0.0 3.0 1 1 1 3 3 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF4455 PF14643.6 gi|305662487|ref|YP_003858775.1| - 0.07 11.8 0.4 0.88 8.1 1.0 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4455) DUF4198 PF10670.9 gi|305662487|ref|YP_003858775.1| - 0.071 13.5 0.7 0.14 12.5 0.4 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4198) BST2 PF16716.5 gi|305662487|ref|YP_003858775.1| - 0.072 13.7 0.4 0.74 10.4 0.2 2.5 2 1 1 3 3 2 0 Bone marrow stromal antigen 2 Spectrin PF00435.21 gi|305662487|ref|YP_003858775.1| - 0.076 13.5 0.0 1 9.9 0.1 2.5 1 1 2 3 3 2 0 Spectrin repeat bZIP_1 PF00170.21 gi|305662487|ref|YP_003858775.1| - 0.076 13.1 1.0 1.9 8.7 0.2 3.0 3 1 1 4 4 2 0 bZIP transcription factor FPP PF05911.11 gi|305662487|ref|YP_003858775.1| - 0.076 11.2 9.7 0.25 9.5 9.7 1.6 1 1 0 1 1 1 0 Filament-like plant protein, long coiled-coil YkyA PF10368.9 gi|305662487|ref|YP_003858775.1| - 0.077 12.7 1.5 0.27 10.9 0.8 2.1 1 1 1 2 2 1 0 Putative cell-wall binding lipoprotein Uso1_p115_C PF04871.13 gi|305662487|ref|YP_003858775.1| - 0.079 13.3 1.4 3.5 8.0 1.3 2.9 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region HAP1_N PF04849.13 gi|305662487|ref|YP_003858775.1| - 0.08 12.1 0.1 0.15 11.2 0.1 1.4 1 1 0 1 1 1 0 HAP1 N-terminal conserved region PMEI PF04043.15 gi|305662487|ref|YP_003858775.1| - 0.081 13.3 11.3 0.15 12.4 2.0 2.5 1 1 1 2 2 2 0 Plant invertase/pectin methylesterase inhibitor Taxilin PF09728.9 gi|305662487|ref|YP_003858775.1| - 0.087 12.0 0.0 0.29 10.3 0.0 1.8 1 1 0 1 1 1 0 Myosin-like coiled-coil protein Spc24 PF08286.11 gi|305662487|ref|YP_003858775.1| - 0.088 13.1 6.3 37 4.6 3.9 3.9 1 1 0 2 2 2 0 Spc24 subunit of Ndc80 Uds1 PF15456.6 gi|305662487|ref|YP_003858775.1| - 0.09 12.9 1.3 5.3 7.2 0.3 2.9 1 1 1 2 2 2 0 Up-regulated During Septation Sipho_Gp157 PF05565.11 gi|305662487|ref|YP_003858775.1| - 0.09 12.8 2.2 2.9 7.9 1.7 2.6 1 1 1 2 2 2 0 Siphovirus Gp157 CENP-H PF05837.12 gi|305662487|ref|YP_003858775.1| - 0.09 13.2 5.0 9.1 6.7 0.8 3.3 1 1 2 3 3 3 0 Centromere protein H (CENP-H) ISG65-75 PF11727.8 gi|305662487|ref|YP_003858775.1| - 0.099 11.9 9.7 1.5 8.0 0.7 2.3 1 1 1 2 2 2 0 Invariant surface glycoprotein Swi5 PF07061.11 gi|305662487|ref|YP_003858775.1| - 0.1 12.7 6.3 3.1 8.0 0.2 4.0 2 1 2 4 4 3 0 Swi5 MtrB PF05440.12 gi|305662487|ref|YP_003858775.1| - 0.11 13.0 11.5 2.9 8.4 0.6 4.8 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B Cluap1 PF10234.9 gi|305662487|ref|YP_003858775.1| - 0.13 11.6 4.9 22 4.3 1.0 3.1 1 1 1 3 3 3 0 Clusterin-associated protein-1 Serine_rich PF08824.10 gi|305662487|ref|YP_003858775.1| - 0.14 12.1 4.8 0.64 10.0 1.4 2.7 1 1 1 3 3 3 0 Serine rich protein interaction domain CC2-LZ PF16516.5 gi|305662487|ref|YP_003858775.1| - 0.14 12.5 1.7 14 6.1 0.3 3.3 1 1 1 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator GCN5L1 PF06320.13 gi|305662487|ref|YP_003858775.1| - 0.15 12.2 5.4 2.4 8.3 0.6 3.2 1 1 3 4 4 4 0 GCN5-like protein 1 (GCN5L1) DUF2570 PF10828.8 gi|305662487|ref|YP_003858775.1| - 0.15 11.9 4.4 0.27 11.1 1.7 2.6 2 2 0 2 2 1 0 Protein of unknown function (DUF2570) DUF1515 PF07439.11 gi|305662487|ref|YP_003858775.1| - 0.16 12.0 8.0 0.17 11.9 1.3 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1515) RasGAP_C PF03836.15 gi|305662487|ref|YP_003858775.1| - 0.16 12.1 0.6 7.4 6.7 0.2 2.8 1 1 1 2 2 2 0 RasGAP C-terminus DASH_Duo1 PF08651.10 gi|305662487|ref|YP_003858775.1| - 0.17 11.7 19.2 6.6 6.6 2.0 5.3 1 1 5 6 6 6 0 DASH complex subunit Duo1 IDO PF01231.18 gi|305662487|ref|YP_003858775.1| - 0.2 10.4 2.0 9.8 4.8 0.2 3.0 1 1 2 4 4 4 0 Indoleamine 2,3-dioxygenase BORCS8 PF10167.9 gi|305662487|ref|YP_003858775.1| - 0.21 11.5 7.2 5.6 6.9 0.1 3.6 1 1 2 3 3 3 0 BLOC-1-related complex sub-unit 8 LIF_OSM PF01291.17 gi|305662487|ref|YP_003858775.1| - 0.21 11.7 3.7 8.7 6.5 0.0 2.8 1 1 2 3 3 3 0 LIF / OSM family ZapB PF06005.12 gi|305662487|ref|YP_003858775.1| - 0.22 12.0 0.1 6.9 7.2 0.0 3.0 2 1 0 2 2 1 0 Cell division protein ZapB APG6_N PF17675.1 gi|305662487|ref|YP_003858775.1| - 0.24 12.0 0.0 0.49 10.9 0.0 1.5 1 0 0 1 1 1 0 Apg6 coiled-coil region Plant_NMP1 PF06694.11 gi|305662487|ref|YP_003858775.1| - 0.25 10.4 4.2 0.078 12.1 0.3 2.0 2 1 0 2 2 2 0 Plant nuclear matrix protein 1 (NMP1) ATG_C PF09333.11 gi|305662487|ref|YP_003858775.1| - 0.26 11.7 3.5 1.4 9.3 0.3 3.2 1 1 2 3 3 2 0 Autophagy-related protein C terminal domain MIF4G_like_2 PF09090.11 gi|305662487|ref|YP_003858775.1| - 0.29 10.5 8.4 0.63 9.5 2.9 2.4 1 1 1 2 2 2 0 MIF4G like DUF2959 PF11172.8 gi|305662487|ref|YP_003858775.1| - 0.37 10.9 9.4 10 6.2 0.9 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) DUF4064 PF13273.6 gi|305662487|ref|YP_003858775.1| - 0.42 10.9 5.6 0.089 13.1 0.6 2.4 3 0 0 3 3 1 0 Protein of unknown function (DUF4064) zf-C4H2 PF10146.9 gi|305662487|ref|YP_003858775.1| - 0.43 10.9 1.9 2.3 8.5 1.9 2.0 1 1 0 1 1 1 0 Zinc finger-containing protein Csm1_N PF18504.1 gi|305662487|ref|YP_003858775.1| - 0.44 10.9 2.5 14 6.1 0.2 3.5 1 1 2 4 4 2 0 Csm1 N-terminal domain FlxA PF14282.6 gi|305662487|ref|YP_003858775.1| - 0.44 10.6 7.0 4 7.5 0.6 4.1 2 2 3 5 5 4 0 FlxA-like protein HCR PF07111.12 gi|305662487|ref|YP_003858775.1| - 0.45 8.5 2.6 0.81 7.7 2.6 1.4 1 1 0 1 1 1 0 Alpha helical coiled-coil rod protein (HCR) Hormone_1 PF00103.20 gi|305662487|ref|YP_003858775.1| - 0.53 10.0 3.3 5.9 6.6 0.1 2.9 1 1 3 4 4 4 0 Somatotropin hormone family T4SS PF07996.11 gi|305662487|ref|YP_003858775.1| - 0.55 10.6 8.9 0.73 10.2 4.0 2.2 1 1 1 2 2 2 0 Type IV secretion system proteins DASH_Dam1 PF08653.10 gi|305662487|ref|YP_003858775.1| - 0.58 10.0 3.7 36 4.2 1.2 3.9 2 2 1 3 3 2 0 DASH complex subunit Dam1 Dynactin PF12455.8 gi|305662487|ref|YP_003858775.1| - 0.64 9.2 3.9 3.5 6.8 1.2 2.5 1 1 1 2 2 2 0 Dynein associated protein DivIVA PF05103.13 gi|305662487|ref|YP_003858775.1| - 0.7 10.0 4.6 4.1 7.5 2.6 2.9 1 1 2 3 3 3 0 DivIVA protein TRAF_BIRC3_bd PF16673.5 gi|305662487|ref|YP_003858775.1| - 0.88 9.4 2.7 20 5.1 0.2 3.7 3 2 1 4 4 3 0 TNF receptor-associated factor BIRC3 binding domain Alanine_zipper PF11839.8 gi|305662487|ref|YP_003858775.1| - 0.93 9.9 11.8 2.4 8.6 0.2 5.2 2 2 3 6 6 3 0 Alanine-zipper, major outer membrane lipoprotein Tweety PF04906.13 gi|305662487|ref|YP_003858775.1| - 0.96 8.0 11.4 2.5 6.6 3.8 2.8 1 1 0 2 2 2 0 Tweety DUF4559 PF15112.6 gi|305662487|ref|YP_003858775.1| - 1.1 8.9 5.7 3.1 7.4 0.6 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4559) DUF1690 PF07956.11 gi|305662487|ref|YP_003858775.1| - 1.3 9.5 7.7 3.6 8.0 0.4 3.4 1 1 3 4 4 4 0 Protein of Unknown function (DUF1690) Wtap PF17098.5 gi|305662487|ref|YP_003858775.1| - 1.5 8.8 3.8 3.3 7.6 3.8 1.7 1 1 0 1 1 1 0 WTAP/Mum2p family GLE1 PF07817.13 gi|305662487|ref|YP_003858775.1| - 1.9 7.6 6.8 2.5 7.2 0.6 2.6 2 1 1 3 3 3 0 GLE1-like protein Vps52 PF04129.12 gi|305662487|ref|YP_003858775.1| - 2 7.1 13.7 0.67 8.6 3.5 2.4 1 1 2 3 3 3 0 Vps52 / Sac2 family E2R135 PF11570.8 gi|305662487|ref|YP_003858775.1| - 2.1 8.6 10.0 0.19 12.0 0.6 3.1 1 1 2 3 3 2 0 Coiled-coil receptor-binding R-domain of colicin E2 CHDCT2 PF08074.11 gi|305662487|ref|YP_003858775.1| - 2.8 8.1 5.6 4.1 7.6 3.0 2.3 1 1 1 2 2 1 0 CHDCT2 (NUC038) domain Sas10_Utp3 PF04000.15 gi|305662487|ref|YP_003858775.1| - 3.9 8.2 7.8 5.9e+03 -2.0 7.8 4.6 1 1 0 1 1 0 0 Sas10/Utp3/C1D family Med10 PF09748.9 gi|305662487|ref|YP_003858775.1| - 3.9 7.5 7.6 8.2 6.4 0.9 3.5 1 1 1 2 2 2 0 Transcription factor subunit Med10 of Mediator complex Flagellin_C PF00700.21 gi|305662487|ref|YP_003858775.1| - 5.3 7.5 21.9 4.4 7.7 0.2 4.7 1 1 2 4 4 4 0 Bacterial flagellin C-terminal helical region FAM76 PF16046.5 gi|305662487|ref|YP_003858775.1| - 7.6 5.8 4.9 15 4.9 0.5 2.1 1 1 1 2 2 2 0 FAM76 protein DUF4254 PF14063.6 gi|305662487|ref|YP_003858775.1| - 10 6.0 8.3 17 5.2 2.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4254) FKBP26_C PF18046.1 gi|305662488|ref|YP_003858776.1| - 1.3e-14 54.1 1.7 3.2e-14 52.8 1.7 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|305662488|ref|YP_003858776.1| - 2.3e-09 37.4 0.2 6.4e-09 36.0 0.1 1.7 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Fe-ADH_2 PF13685.6 gi|305662489|ref|YP_003858777.1| - 4.3e-65 219.9 0.8 6e-65 219.4 0.8 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|305662489|ref|YP_003858777.1| - 1.5e-27 96.4 1.1 8.3e-27 93.9 1.1 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|305662489|ref|YP_003858777.1| - 7e-12 45.0 0.7 3.3e-07 29.8 0.0 2.9 2 1 0 2 2 2 2 3-dehydroquinate synthase Proteasome PF00227.26 gi|305662490|ref|YP_003858778.1| - 1.9e-51 174.3 1.7 2.2e-51 174.1 1.7 1.1 1 0 0 1 1 1 1 Proteasome subunit Polysacc_synt_2 PF02719.15 gi|305662490|ref|YP_003858778.1| - 0.041 13.0 0.2 0.092 11.9 0.0 1.6 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein DNA_mis_repair PF01119.19 gi|305662490|ref|YP_003858778.1| - 0.11 12.1 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 DNA mismatch repair protein, C-terminal domain KH_7 PF17214.3 gi|305662491|ref|YP_003858779.1| - 5.7e-25 87.1 7.1 3.3e-23 81.4 0.6 2.8 1 1 1 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|305662491|ref|YP_003858779.1| - 1.6e-24 86.3 0.0 3.2e-24 85.3 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|305662491|ref|YP_003858779.1| - 3.2e-17 62.2 0.0 8.2e-17 60.9 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|305662491|ref|YP_003858779.1| - 1.9e-14 54.1 0.9 2.2e-13 50.6 0.9 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|305662491|ref|YP_003858779.1| - 1e-13 51.1 0.0 2.3e-13 50.0 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|305662491|ref|YP_003858779.1| - 1e-07 31.7 0.1 2.8e-07 30.3 0.1 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|305662491|ref|YP_003858779.1| - 0.00016 21.6 0.0 0.0004 20.3 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain CTP_transf_like PF01467.26 gi|305662492|ref|YP_003858780.1| - 1.3e-17 64.4 0.0 1.6e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like DUF357 PF04010.13 gi|305662492|ref|YP_003858780.1| - 4.5e-16 58.7 0.3 7.5e-16 58.0 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Gamma_PGA_hydro PF05908.11 gi|305662492|ref|YP_003858780.1| - 0.24 10.8 0.0 0.3 10.4 0.0 1.2 1 0 0 1 1 1 0 Poly-gamma-glutamate hydrolase TP_methylase PF00590.20 gi|305662493|ref|YP_003858781.1| - 4e-09 36.7 0.0 5e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HD PF01966.22 gi|305662494|ref|YP_003858782.1| - 3.4e-15 56.3 0.2 8.6e-15 55.0 0.1 1.8 2 0 0 2 2 2 1 HD domain Sars6 PF12133.8 gi|305662494|ref|YP_003858782.1| - 0.025 14.5 0.1 0.066 13.1 0.1 1.7 1 0 0 1 1 1 0 Open reading frame 6 from SARS coronavirus HDOD PF08668.12 gi|305662494|ref|YP_003858782.1| - 0.11 11.9 0.0 0.25 10.8 0.0 1.6 1 1 1 2 2 2 0 HDOD domain Rib_5-P_isom_A PF06026.14 gi|305662496|ref|YP_003858784.1| - 1.9e-46 157.8 0.0 2.2e-46 157.6 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DUF4834 PF16118.5 gi|305662497|ref|YP_003858785.1| - 0.28 12.2 1.1 0.31 12.0 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) DUF4044 PF13253.6 gi|305662497|ref|YP_003858785.1| - 3.2 7.3 8.3 5 6.7 8.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) Ribo_biogen_C PF04034.13 gi|305662498|ref|YP_003858786.1| - 7.1e-42 142.1 0.0 8.6e-42 141.9 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|305662498|ref|YP_003858786.1| - 0.00028 20.6 0.0 0.00053 19.8 0.0 1.4 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AsnC_trans_reg PF01037.21 gi|305662499|ref|YP_003858787.1| - 3.2e-15 55.8 0.4 3.6e-15 55.7 0.4 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|305662499|ref|YP_003858787.1| - 0.00025 21.0 1.0 0.00061 19.8 1.0 1.6 1 1 0 1 1 1 1 NapD protein ACT_4 PF13291.6 gi|305662499|ref|YP_003858787.1| - 0.035 14.7 0.2 7.4 7.2 0.0 2.1 2 0 0 2 2 2 0 ACT domain DUF1743 PF08489.11 gi|305662500|ref|YP_003858788.1| - 1.6e-35 121.7 0.0 4.6e-35 120.2 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|305662500|ref|YP_003858788.1| - 0.00027 20.9 0.0 0.00058 19.8 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain C1_1 PF00130.22 gi|305662500|ref|YP_003858788.1| - 0.019 14.8 2.4 0.042 13.7 2.4 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|305662500|ref|YP_003858788.1| - 0.028 14.4 4.3 0.064 13.3 4.3 1.6 1 0 0 1 1 1 0 Double zinc ribbon PliI PF16743.5 gi|305662500|ref|YP_003858788.1| - 0.05 13.3 0.0 0.89 9.3 0.0 2.6 2 1 1 3 3 3 0 Periplasmic lysozyme inhibitor of I-type lysozyme OrfB_Zn_ribbon PF07282.11 gi|305662500|ref|YP_003858788.1| - 0.71 9.8 6.9 2.1 8.3 4.3 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.6 gi|305662500|ref|YP_003858788.1| - 0.79 10.3 3.1 18 5.9 0.1 2.6 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|305662500|ref|YP_003858788.1| - 2.4 8.2 7.6 4.9 7.2 7.6 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.26 gi|305662500|ref|YP_003858788.1| - 6.8 7.4 5.5 14 6.3 0.2 3.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type Sec61_beta PF03911.16 gi|305662501|ref|YP_003858789.1| - 2.3e-11 43.5 1.3 2.6e-11 43.4 1.3 1.1 1 0 0 1 1 1 1 Sec61beta family SWIM PF04434.17 gi|305662502|ref|YP_003858790.1| - 0.004 16.8 0.5 0.007 16.0 0.5 1.4 1 0 0 1 1 1 1 SWIM zinc finger PcrB PF01884.17 gi|305662503|ref|YP_003858791.1| - 2.9e-57 193.7 0.9 3.7e-57 193.4 0.9 1.0 1 0 0 1 1 1 1 PcrB family DHO_dh PF01180.21 gi|305662503|ref|YP_003858791.1| - 2.4e-05 23.7 0.1 4.2e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|305662503|ref|YP_003858791.1| - 0.00015 21.3 0.1 0.00038 20.0 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein Pyr_redox_2 PF07992.14 gi|305662503|ref|YP_003858791.1| - 0.0043 16.3 0.1 0.083 12.1 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Ribul_P_3_epim PF00834.19 gi|305662503|ref|YP_003858791.1| - 0.014 14.8 0.5 0.038 13.4 0.2 1.7 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family IMPDH PF00478.25 gi|305662503|ref|YP_003858791.1| - 0.018 14.1 0.3 0.21 10.5 0.0 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DpaA_N PF16924.5 gi|305662503|ref|YP_003858791.1| - 0.067 13.3 0.2 0.26 11.4 0.1 2.0 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain CutC PF03932.14 gi|305662503|ref|YP_003858791.1| - 0.11 12.0 0.5 1.9 7.9 0.1 2.2 2 0 0 2 2 2 0 CutC family QRPTase_C PF01729.19 gi|305662503|ref|YP_003858791.1| - 0.11 12.3 0.0 4.5 7.0 0.1 2.3 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain IF-2B PF01008.17 gi|305662504|ref|YP_003858792.1| - 1.5e-93 313.1 1.3 1.7e-93 312.9 1.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Hydrolase PF00702.26 gi|305662504|ref|YP_003858792.1| - 0.032 14.5 0.1 0.055 13.8 0.1 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase tRNA_int_endo PF01974.17 gi|305662505|ref|YP_003858793.1| - 0.084 12.9 0.2 0.3 11.2 0.2 2.0 1 1 0 1 1 1 0 tRNA intron endonuclease, catalytic C-terminal domain tRNA-synt_His PF13393.6 gi|305662506|ref|YP_003858794.1| - 1.3e-62 211.9 0.0 1.7e-62 211.5 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|305662506|ref|YP_003858794.1| - 6.7e-14 52.3 0.9 2.6e-13 50.3 0.5 2.0 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|305662506|ref|YP_003858794.1| - 2.3e-12 46.9 0.2 5.2e-12 45.8 0.2 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.20 gi|305662506|ref|YP_003858794.1| - 6.2e-09 35.7 0.1 2.3e-08 33.8 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|305662506|ref|YP_003858794.1| - 0.0049 16.3 0.1 0.0084 15.6 0.1 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain TAF1_subA PF14929.6 gi|305662506|ref|YP_003858794.1| - 0.025 14.0 0.0 0.027 13.9 0.0 1.1 1 0 0 1 1 1 0 TAF RNA Polymerase I subunit A Ins_allergen_rp PF06757.13 gi|305662506|ref|YP_003858794.1| - 0.03 14.3 2.0 0.059 13.3 0.3 2.2 2 0 0 2 2 2 0 Insect allergen related repeat, nitrile-specifier detoxification SAS4 PF15460.6 gi|305662506|ref|YP_003858794.1| - 0.03 14.4 0.6 0.064 13.4 0.6 1.5 1 0 0 1 1 1 0 Something about silencing, SAS, complex subunit 4 tRNA-synt_2 PF00152.20 gi|305662506|ref|YP_003858794.1| - 0.11 11.5 4.0 1.3 8.0 1.6 2.7 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) DS PF01916.17 gi|305662507|ref|YP_003858795.1| - 5e-99 331.2 0.0 5.7e-99 331.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase WIYLD PF10440.9 gi|305662507|ref|YP_003858795.1| - 0.023 14.5 0.0 0.083 12.7 0.0 1.9 2 0 0 2 2 2 0 Ubiquitin-binding WIYLD domain Topo-VIb_trans PF09239.11 gi|305662508|ref|YP_003858796.1| - 1.6e-61 206.8 0.2 2.9e-61 206.0 0.2 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|305662508|ref|YP_003858796.1| - 6.4e-12 46.0 0.0 1.3e-11 45.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|305662508|ref|YP_003858796.1| - 2.4e-10 40.4 0.0 4.5e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|305662508|ref|YP_003858796.1| - 2.1e-06 26.8 0.0 3.7e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) H2TH PF06831.14 gi|305662508|ref|YP_003858796.1| - 0.0008 19.4 0.0 0.0022 18.0 0.0 1.7 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Hom_end PF05204.14 gi|305662508|ref|YP_003858796.1| - 0.028 14.6 0.1 0.054 13.7 0.1 1.4 1 0 0 1 1 1 0 Homing endonuclease TP6A_N PF04406.14 gi|305662509|ref|YP_003858797.1| - 4.4e-21 74.6 0.8 7.6e-21 73.9 0.8 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2204 PF09970.9 gi|305662510|ref|YP_003858798.1| - 2.9e-45 154.1 0.4 3.2e-45 154.0 0.4 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) AP_endonuc_2 PF01261.24 gi|305662510|ref|YP_003858798.1| - 0.00072 19.1 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Ribosomal_L40e PF01020.17 gi|305662511|ref|YP_003858799.1| - 2.8e-10 39.9 3.8 3.5e-10 39.6 3.8 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|305662511|ref|YP_003858799.1| - 6.7e-05 22.5 2.0 9e-05 22.1 2.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.8 gi|305662511|ref|YP_003858799.1| - 0.00016 21.5 3.2 0.0002 21.2 3.2 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|305662511|ref|YP_003858799.1| - 0.00079 19.4 0.4 0.00087 19.3 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon TackOD1 PF18551.1 gi|305662511|ref|YP_003858799.1| - 0.0077 15.9 0.4 0.0084 15.8 0.4 1.0 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zf-RanBP PF00641.18 gi|305662511|ref|YP_003858799.1| - 0.021 14.1 4.4 0.029 13.7 4.4 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Rubredoxin_2 PF18073.1 gi|305662511|ref|YP_003858799.1| - 0.06 13.1 3.2 0.099 12.4 3.2 1.3 1 1 0 1 1 1 0 Rubredoxin metal binding domain HypA PF01155.19 gi|305662511|ref|YP_003858799.1| - 0.083 12.9 0.4 0.088 12.8 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-dskA_traR PF01258.17 gi|305662511|ref|YP_003858799.1| - 1.2 9.1 6.2 4.8 7.2 1.0 2.2 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger KH_5 PF13184.6 gi|305662512|ref|YP_003858800.1| - 6.6e-07 29.3 0.0 1.2e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 NusA-like KH domain tRNA-synt_2 PF00152.20 gi|305662513|ref|YP_003858801.1| - 7.7e-89 297.9 0.0 9.8e-89 297.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|305662513|ref|YP_003858801.1| - 2.5e-15 56.2 0.7 4.8e-15 55.3 0.7 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|305662513|ref|YP_003858801.1| - 0.0045 16.5 0.0 1.8 8.0 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) PTH2 PF01981.16 gi|305662514|ref|YP_003858802.1| - 3.6e-42 143.3 0.1 4e-42 143.2 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF4780 PF16012.5 gi|305662514|ref|YP_003858802.1| - 0.00014 21.4 0.7 0.00017 21.1 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4780) DUF1610 PF07754.11 gi|305662515|ref|YP_003858803.1| - 6.1e-12 45.3 12.2 4e-10 39.5 5.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.7 gi|305662515|ref|YP_003858803.1| - 0.00017 21.5 10.3 0.19 11.8 2.0 2.2 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|305662515|ref|YP_003858803.1| - 0.0026 17.1 17.0 0.094 12.2 0.2 3.6 4 0 0 4 4 3 3 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|305662515|ref|YP_003858803.1| - 0.0026 17.4 18.9 0.005 16.5 3.1 3.4 2 1 1 3 3 3 2 zinc-ribbon domain DUF1272 PF06906.11 gi|305662515|ref|YP_003858803.1| - 0.0086 16.2 9.5 3.2 7.9 9.5 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) zf-MYND PF01753.18 gi|305662515|ref|YP_003858803.1| - 0.015 15.3 6.2 2.3 8.4 6.2 2.4 1 1 0 1 1 1 0 MYND finger zinc_ribbon_10 PF10058.9 gi|305662515|ref|YP_003858803.1| - 0.022 14.5 17.8 0.57 10.0 3.9 3.8 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein HypA PF01155.19 gi|305662515|ref|YP_003858803.1| - 0.026 14.6 8.8 0.064 13.3 0.5 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PolC_DP2 PF03833.13 gi|305662515|ref|YP_003858803.1| - 0.026 12.4 2.6 0.025 12.5 2.6 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-CHY PF05495.12 gi|305662515|ref|YP_003858803.1| - 0.039 14.4 8.4 1.1 9.8 0.3 2.0 1 1 1 2 2 2 0 CHY zinc finger zf-RING_9 PF13901.6 gi|305662515|ref|YP_003858803.1| - 0.055 13.5 6.5 0.062 13.3 6.5 1.0 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon C1_2 PF03107.16 gi|305662515|ref|YP_003858803.1| - 0.065 13.6 9.4 4.6 7.7 4.8 2.2 1 1 1 2 2 2 0 C1 domain DUF2072 PF09845.9 gi|305662515|ref|YP_003858803.1| - 0.078 13.2 2.1 0.078 13.2 2.1 2.1 1 1 1 2 2 2 0 Zn-ribbon containing protein Rubredoxin_2 PF18073.1 gi|305662515|ref|YP_003858803.1| - 0.081 12.7 21.4 1.2 8.9 0.3 3.8 3 1 0 3 3 3 0 Rubredoxin metal binding domain zinc-ribbons_6 PF07191.12 gi|305662515|ref|YP_003858803.1| - 0.083 12.9 8.9 0.93 9.5 8.9 2.1 1 1 0 1 1 1 0 zinc-ribbons NRDD PF13597.6 gi|305662515|ref|YP_003858803.1| - 0.094 11.5 8.5 0.56 8.9 0.3 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-AN1 PF01428.16 gi|305662515|ref|YP_003858803.1| - 0.099 12.8 9.9 7.2 6.9 2.6 2.5 1 1 1 2 2 2 0 AN1-like Zinc finger zf-tcix PF14952.6 gi|305662515|ref|YP_003858803.1| - 0.12 12.0 13.4 0.26 11.0 1.5 3.0 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-Mss51 PF13824.6 gi|305662515|ref|YP_003858803.1| - 0.12 12.5 9.9 0.8 9.9 3.8 2.4 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_4 PF13717.6 gi|305662515|ref|YP_003858803.1| - 0.15 12.0 17.5 1.2 9.1 4.5 4.0 2 1 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|305662515|ref|YP_003858803.1| - 0.19 11.4 14.2 8.6 6.1 0.2 4.1 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger IBR PF01485.21 gi|305662515|ref|YP_003858803.1| - 0.19 12.0 10.2 0.095 12.9 4.6 2.1 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain Prok-RING_1 PF14446.6 gi|305662515|ref|YP_003858803.1| - 0.21 11.5 10.3 0.085 12.8 4.2 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.11 gi|305662515|ref|YP_003858803.1| - 0.28 11.1 11.6 0.13 12.2 0.9 2.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|305662515|ref|YP_003858803.1| - 0.35 10.4 15.4 0.23 11.0 2.6 2.9 2 1 1 3 3 3 0 TFIIB zinc-binding DUF35_N PF12172.8 gi|305662515|ref|YP_003858803.1| - 0.36 10.8 15.1 2.6 8.0 3.7 4.2 3 2 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2HC5 PF06221.13 gi|305662515|ref|YP_003858803.1| - 0.37 10.8 9.9 1.9 8.5 0.1 2.4 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-RING_7 PF02591.15 gi|305662515|ref|YP_003858803.1| - 0.39 10.9 0.1 0.39 10.9 0.1 3.4 3 1 1 4 4 4 0 C4-type zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|305662515|ref|YP_003858803.1| - 0.39 10.5 15.0 7.5 6.4 2.6 3.6 2 2 0 2 2 2 0 A2L zinc ribbon domain COPI_C PF06957.11 gi|305662515|ref|YP_003858803.1| - 0.42 9.3 1.5 0.47 9.2 1.5 1.1 1 0 0 1 1 1 0 Coatomer (COPI) alpha subunit C-terminus zf-B_box PF00643.24 gi|305662515|ref|YP_003858803.1| - 0.43 10.8 8.9 4.8 7.4 0.5 2.6 1 1 2 3 3 3 0 B-box zinc finger DNA_RNApol_7kD PF03604.13 gi|305662515|ref|YP_003858803.1| - 1.1 9.1 16.5 0.23 11.2 1.9 3.4 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.6 gi|305662515|ref|YP_003858803.1| - 1.3 9.0 11.3 0.97 9.4 1.9 3.5 3 1 0 3 3 3 0 Nudix N-terminal zf-ACC PF17848.1 gi|305662515|ref|YP_003858803.1| - 2.6 8.2 19.5 1.5 8.9 0.2 4.0 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Zn_ribbon_SprT PF17283.2 gi|305662515|ref|YP_003858803.1| - 2.8 7.9 18.4 1.8 8.6 0.4 3.8 2 1 1 3 3 3 0 SprT-like zinc ribbon domain TFIIS_C PF01096.18 gi|305662515|ref|YP_003858803.1| - 2.9 7.8 17.6 20 5.2 0.3 3.9 2 1 1 3 3 3 0 Transcription factor S-II (TFIIS) Sgf11 PF08209.11 gi|305662515|ref|YP_003858803.1| - 3.5 7.3 16.5 2.6 7.7 0.2 3.8 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.10 gi|305662515|ref|YP_003858803.1| - 3.9 7.7 18.3 6.2 7.0 0.7 3.8 1 1 2 3 3 3 0 Zinc ribbon domain RNHCP PF12647.7 gi|305662515|ref|YP_003858803.1| - 4.1 7.4 10.5 22 5.1 1.2 3.0 1 1 2 3 3 3 0 RNHCP domain zf-LSD1 PF06943.12 gi|305662515|ref|YP_003858803.1| - 4.4 7.2 11.3 3.6 7.5 0.1 3.8 4 0 0 4 4 4 0 LSD1 zinc finger DUF2321 PF10083.9 gi|305662515|ref|YP_003858803.1| - 4.7 6.8 6.8 1.3 8.7 0.5 2.4 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-NADH-PPase PF09297.11 gi|305662515|ref|YP_003858803.1| - 5.9 6.6 14.6 1.4 8.7 3.2 3.5 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Nop10p PF04135.12 gi|305662515|ref|YP_003858803.1| - 6.1 7.0 6.5 9.9 6.3 0.6 2.6 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family Ribosomal_L32p PF01783.23 gi|305662515|ref|YP_003858803.1| - 6.1 7.2 11.0 22 5.4 0.1 3.5 1 1 2 3 3 3 0 Ribosomal L32p protein family zinc_ribbon_12 PF11331.8 gi|305662515|ref|YP_003858803.1| - 6.6 6.6 12.3 0.32 10.8 1.4 3.2 1 1 1 2 2 2 0 Probable zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|305662515|ref|YP_003858803.1| - 7.3 6.6 12.2 39 4.2 2.6 3.5 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.6 gi|305662515|ref|YP_003858803.1| - 7.5 6.0 16.6 4.9e+03 -3.0 16.6 3.5 1 1 0 1 1 0 0 Transcription factor zinc-finger Rpr2 PF04032.16 gi|305662515|ref|YP_003858803.1| - 9 6.7 11.0 68 3.8 11.0 2.7 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain EF1_GNE PF00736.19 gi|305662516|ref|YP_003858804.1| - 3.8e-15 55.8 1.7 4.2e-15 55.7 1.7 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain ZT_dimer PF16916.5 gi|305662516|ref|YP_003858804.1| - 0.036 14.2 2.1 1.8 8.8 0.2 2.8 2 1 1 3 3 3 0 Dimerisation domain of Zinc Transporter Chal_sti_synt_C PF02797.15 gi|305662516|ref|YP_003858804.1| - 0.04 13.9 0.1 0.069 13.1 0.0 1.4 1 1 0 1 1 1 0 Chalcone and stilbene synthases, C-terminal domain Glu-tRNAGln PF02686.15 gi|305662516|ref|YP_003858804.1| - 0.13 12.6 0.7 1 9.7 0.3 2.0 2 0 0 2 2 2 0 Glu-tRNAGln amidotransferase C subunit CAP18_C PF12153.8 gi|305662516|ref|YP_003858804.1| - 1.3 9.0 5.9 1.4 8.9 0.2 2.7 2 1 1 3 3 3 0 LPS binding domain of CAP18 (C terminal) Penicillinase_R PF03965.16 gi|305662517|ref|YP_003858805.1| - 0.0025 18.1 0.2 0.0029 17.9 0.2 1.1 1 0 0 1 1 1 1 Penicillinase repressor YjcQ PF09639.10 gi|305662517|ref|YP_003858805.1| - 0.0047 17.1 0.6 0.0052 17.0 0.6 1.1 1 0 0 1 1 1 1 YjcQ protein DUF2551 PF10826.8 gi|305662517|ref|YP_003858805.1| - 0.013 15.8 0.3 0.015 15.5 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2551) HTH_24 PF13412.6 gi|305662517|ref|YP_003858805.1| - 0.091 12.3 0.0 0.16 11.5 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|305662517|ref|YP_003858805.1| - 0.11 12.7 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain DUF4145 PF13643.6 gi|305662517|ref|YP_003858805.1| - 0.13 12.4 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4145) XPG_I PF00867.18 gi|305662518|ref|YP_003858806.1| - 1.2e-27 96.1 0.0 2.1e-27 95.3 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|305662518|ref|YP_003858806.1| - 8.4e-23 80.8 0.0 5.6e-22 78.1 0.0 2.1 2 0 0 2 2 2 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|305662518|ref|YP_003858806.1| - 2e-09 37.9 0.0 6.1e-09 36.4 0.0 1.9 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|305662518|ref|YP_003858806.1| - 0.00053 20.5 0.2 0.0032 18.0 0.0 2.4 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|305662518|ref|YP_003858806.1| - 0.021 14.9 0.0 0.064 13.4 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF1771 PF08590.10 gi|305662518|ref|YP_003858806.1| - 0.024 15.0 2.4 0.024 15.0 2.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) HHH PF00633.23 gi|305662518|ref|YP_003858806.1| - 0.1 12.5 0.1 0.39 10.7 0.1 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix motif OTCace PF00185.24 gi|305662519|ref|YP_003858807.1| - 1.4e-58 197.4 0.0 1.9e-58 197.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|305662519|ref|YP_003858807.1| - 3.5e-47 160.1 0.0 9e-47 158.8 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Root_cap PF06830.11 gi|305662519|ref|YP_003858807.1| - 0.16 12.1 0.0 22 5.3 0.0 2.4 2 0 0 2 2 2 0 Root cap ERK-JNK_inhib PF15002.6 gi|305662520|ref|YP_003858808.1| - 0.0018 18.0 6.6 0.0028 17.4 6.6 1.3 1 0 0 1 1 1 1 ERK and JNK pathways, inhibitor Topoisom_I_N PF02919.15 gi|305662520|ref|YP_003858808.1| - 0.0028 17.2 2.9 0.0046 16.5 2.9 1.4 1 0 0 1 1 1 1 Eukaryotic DNA topoisomerase I, DNA binding fragment AP3D1 PF06375.11 gi|305662520|ref|YP_003858808.1| - 0.093 13.0 9.1 0.058 13.6 7.5 1.5 2 0 0 2 2 2 0 AP-3 complex subunit delta-1 Adenosine_kin PF04008.14 gi|305662521|ref|YP_003858809.1| - 2.7e-72 241.6 0.1 3.1e-72 241.4 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Spt5-NGN PF03439.13 gi|305662523|ref|YP_003858811.1| - 0.12 12.3 0.1 13 5.8 0.0 2.1 1 1 1 2 2 2 0 Early transcription elongation factor of RNA pol II, NGN section DUF3989 PF13150.6 gi|305662524|ref|YP_003858812.1| - 0.011 15.5 0.1 0.039 13.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) SieB PF14163.6 gi|305662524|ref|YP_003858812.1| - 0.021 14.3 0.5 0.044 13.3 0.5 1.8 1 1 0 1 1 1 0 Super-infection exclusion protein B AdoMet_dc PF02675.15 gi|305662525|ref|YP_003858813.1| - 9.7e-33 112.6 0.0 1.1e-32 112.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase T2SSE PF00437.20 gi|305662526|ref|YP_003858814.1| - 3.8e-11 42.6 0.1 8.3e-11 41.5 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|305662526|ref|YP_003858814.1| - 0.00018 22.0 0.0 0.00051 20.5 0.0 1.8 2 0 0 2 2 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|305662526|ref|YP_003858814.1| - 0.00052 20.6 0.0 0.0028 18.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|305662526|ref|YP_003858814.1| - 0.002 17.9 0.0 0.0088 15.8 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|305662526|ref|YP_003858814.1| - 0.003 18.0 0.0 0.0099 16.3 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|305662526|ref|YP_003858814.1| - 0.0061 15.9 0.0 0.016 14.5 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.17 gi|305662526|ref|YP_003858814.1| - 0.0084 15.9 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|305662526|ref|YP_003858814.1| - 0.0084 15.5 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_14 PF13173.6 gi|305662526|ref|YP_003858814.1| - 0.011 15.8 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|305662526|ref|YP_003858814.1| - 0.012 15.8 0.0 0.13 12.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|305662526|ref|YP_003858814.1| - 0.012 15.8 0.0 0.027 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|305662526|ref|YP_003858814.1| - 0.013 15.4 0.1 0.053 13.4 0.0 2.1 2 0 0 2 2 2 0 NTPase ResIII PF04851.15 gi|305662526|ref|YP_003858814.1| - 0.013 15.5 0.0 0.032 14.2 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit SRP54 PF00448.22 gi|305662526|ref|YP_003858814.1| - 0.015 14.9 0.1 0.027 14.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|305662526|ref|YP_003858814.1| - 0.015 14.8 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|305662526|ref|YP_003858814.1| - 0.016 15.2 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|305662526|ref|YP_003858814.1| - 0.02 14.9 0.0 0.042 13.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|305662526|ref|YP_003858814.1| - 0.02 15.1 0.0 0.046 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|305662526|ref|YP_003858814.1| - 0.025 14.6 0.0 0.06 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|305662526|ref|YP_003858814.1| - 0.032 14.7 0.0 0.12 12.9 0.0 1.9 3 0 0 3 3 1 0 ABC transporter Thymidylate_kin PF02223.17 gi|305662526|ref|YP_003858814.1| - 0.036 13.8 0.0 0.11 12.2 0.0 1.8 1 1 1 2 2 2 0 Thymidylate kinase MeaB PF03308.16 gi|305662526|ref|YP_003858814.1| - 0.037 13.0 0.0 0.068 12.1 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Sigma54_activat PF00158.26 gi|305662526|ref|YP_003858814.1| - 0.039 13.6 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain ATP_bind_1 PF03029.17 gi|305662526|ref|YP_003858814.1| - 0.049 13.4 0.0 0.083 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|305662526|ref|YP_003858814.1| - 0.061 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.6 gi|305662526|ref|YP_003858814.1| - 0.087 12.5 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|305662526|ref|YP_003858814.1| - 0.094 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|305662526|ref|YP_003858814.1| - 0.14 12.2 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|305662526|ref|YP_003858814.1| - 0.15 12.4 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.13 gi|305662526|ref|YP_003858814.1| - 0.16 11.1 0.0 0.3 10.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MerR_1 PF13411.6 gi|305662526|ref|YP_003858814.1| - 0.18 11.9 2.2 8.5 6.6 0.1 3.7 4 0 0 4 4 4 0 MerR HTH family regulatory protein Hydin_ADK PF17213.3 gi|305662526|ref|YP_003858814.1| - 0.24 11.7 0.1 0.48 10.7 0.1 1.4 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain Hjc PF01870.18 gi|305662527|ref|YP_003858815.1| - 9.6e-29 99.2 0.8 1.3e-28 98.8 0.8 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|305662527|ref|YP_003858815.1| - 0.0075 16.7 0.5 0.015 15.8 0.5 1.8 1 1 0 1 1 1 1 Nuclease-related domain AHJR-like PF18743.1 gi|305662527|ref|YP_003858815.1| - 0.024 14.2 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 REase_AHJR-like Ribosomal_L13e PF01294.18 gi|305662528|ref|YP_003858816.1| - 3.4e-10 40.1 0.1 4e-10 39.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e MCC-bdg_PDZ PF10506.9 gi|305662528|ref|YP_003858816.1| - 0.065 13.3 0.7 0.73 9.9 0.2 2.0 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome ZnuA PF01297.17 gi|305662528|ref|YP_003858816.1| - 0.14 11.6 0.2 0.16 11.4 0.2 1.1 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic DUF4041 PF13250.6 gi|305662529|ref|YP_003858817.1| - 0.077 12.9 2.8 4 7.4 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4041) ATP_bind_3 PF01171.20 gi|305662530|ref|YP_003858818.1| - 8.4e-12 45.2 0.0 1.5e-11 44.4 0.0 1.4 1 1 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|305662530|ref|YP_003858818.1| - 7.7e-06 25.2 0.0 1.1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|305662530|ref|YP_003858818.1| - 0.0005 19.0 0.0 0.00065 18.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase DZR PF12773.7 gi|305662530|ref|YP_003858818.1| - 0.0059 16.6 8.1 0.11 12.5 0.1 3.4 3 1 0 3 3 3 1 Double zinc ribbon zf-dskA_traR PF01258.17 gi|305662530|ref|YP_003858818.1| - 0.014 15.3 7.1 0.69 9.9 0.5 3.6 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-C3HC4_3 PF13920.6 gi|305662530|ref|YP_003858818.1| - 0.12 12.2 0.4 0.12 12.2 0.4 3.1 4 1 0 4 4 4 0 Zinc finger, C3HC4 type (RING finger) PAPS_reduct PF01507.19 gi|305662530|ref|YP_003858818.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family HscB_4_cys PF18256.1 gi|305662530|ref|YP_003858818.1| - 0.42 10.5 1.8 1.1 9.1 1.8 1.8 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif TFIIS_C PF01096.18 gi|305662530|ref|YP_003858818.1| - 0.98 9.3 3.5 2.2 8.2 0.0 3.1 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) Vps36-NZF-N PF16988.5 gi|305662530|ref|YP_003858818.1| - 1.8 8.0 4.9 13 5.2 0.6 3.1 3 1 1 4 4 4 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Ribosomal_L32p PF01783.23 gi|305662530|ref|YP_003858818.1| - 2.8 8.3 6.2 6.8 7.0 0.3 3.2 3 0 0 3 3 3 0 Ribosomal L32p protein family DUF211 PF02680.14 gi|305662531|ref|YP_003858819.1| - 2.1e-30 104.7 6.8 2.2e-30 104.6 6.8 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.26 gi|305662531|ref|YP_003858819.1| - 0.00051 20.4 1.7 0.0056 17.1 1.7 2.3 1 1 0 1 1 1 1 Heavy-metal-associated domain YabP PF07873.11 gi|305662531|ref|YP_003858819.1| - 0.07 12.9 3.7 0.096 12.5 3.7 1.3 1 0 0 1 1 1 0 YabP family DUF4503 PF14951.6 gi|305662531|ref|YP_003858819.1| - 0.17 10.3 0.2 0.19 10.2 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) TAL_FSA PF00923.19 gi|305662532|ref|YP_003858820.1| - 0.069 12.5 0.3 0.14 11.5 0.0 1.6 2 0 0 2 2 2 0 Transaldolase/Fructose-6-phosphate aldolase Thi4 PF01946.17 gi|305662533|ref|YP_003858821.1| - 0.016 14.4 0.4 0.024 13.9 0.4 1.2 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|305662533|ref|YP_003858821.1| - 0.047 13.0 0.3 0.31 10.3 0.1 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|305662533|ref|YP_003858821.1| - 0.048 14.2 0.1 0.15 12.6 0.1 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thioredoxin_3 PF13192.6 gi|305662534|ref|YP_003858822.1| - 0.00091 19.2 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain HSP20 PF00011.21 gi|305662536|ref|YP_003858824.1| - 2.8e-10 40.3 5.1 8.8e-10 38.7 1.9 2.4 2 1 0 2 2 2 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|305662536|ref|YP_003858824.1| - 1.3e-09 37.4 0.4 2.1e-09 36.8 0.4 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|305662536|ref|YP_003858824.1| - 0.011 15.8 0.1 0.016 15.3 0.1 1.1 1 0 0 1 1 1 0 GvpH PIH1_CS PF18201.1 gi|305662536|ref|YP_003858824.1| - 0.048 14.1 0.1 0.065 13.7 0.1 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain zf-ZPR1 PF03367.13 gi|305662537|ref|YP_003858825.1| - 6.2e-24 84.7 2.6 7.2e-24 84.4 2.6 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|305662537|ref|YP_003858825.1| - 0.0064 16.9 0.2 0.012 16.0 0.2 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar Mu-like_Com PF10122.9 gi|305662537|ref|YP_003858825.1| - 0.016 14.6 0.6 0.55 9.7 0.0 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.11 gi|305662537|ref|YP_003858825.1| - 0.037 13.9 0.6 0.071 13.0 0.0 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.6 gi|305662537|ref|YP_003858825.1| - 0.067 13.6 0.6 19 5.9 0.1 2.5 2 0 0 2 2 2 0 Zinc-finger double domain UPF0547 PF10571.9 gi|305662537|ref|YP_003858825.1| - 0.087 12.9 0.5 0.54 10.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1 PF03811.13 gi|305662537|ref|YP_003858825.1| - 0.099 12.4 0.1 16 5.3 0.0 2.3 2 0 0 2 2 2 0 InsA N-terminal domain zf-ribbon_3 PF13248.6 gi|305662537|ref|YP_003858825.1| - 0.27 10.7 8.9 0.37 10.3 0.7 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|305662537|ref|YP_003858825.1| - 0.57 10.2 4.6 3 7.8 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain STT3 PF02516.14 gi|305662538|ref|YP_003858826.1| - 6.9e-16 58.2 42.8 1.2e-15 57.5 42.8 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit zf-C2H2_4 PF13894.6 gi|305662539|ref|YP_003858827.1| - 0.53 11.3 1.6 5.1 8.2 0.0 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger RNA_pol_RpbG PF16992.5 gi|305662540|ref|YP_003858828.1| - 1.8e-44 150.6 4.8 2e-44 150.5 4.8 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G RNA_pol_Rpb8 PF03870.15 gi|305662540|ref|YP_003858828.1| - 6.9e-06 26.3 1.4 0.00017 21.8 1.4 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb8 Lsm_C PF14894.6 gi|305662541|ref|YP_003858829.1| - 5.7e-27 93.3 0.5 1.1e-26 92.3 0.5 1.5 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.22 gi|305662541|ref|YP_003858829.1| - 1.1e-06 28.2 0.0 1.9e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|305662541|ref|YP_003858829.1| - 0.0055 16.8 0.0 0.0078 16.3 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain Gemin6 PF06372.12 gi|305662541|ref|YP_003858829.1| - 0.0071 15.9 0.0 0.0086 15.6 0.0 1.4 1 1 0 1 1 1 1 Gemin6 protein TGT PF01702.18 gi|305662542|ref|YP_003858830.1| - 3.2e-64 217.3 0.0 4.3e-64 216.9 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|305662542|ref|YP_003858830.1| - 0.01 15.7 0.3 0.034 14.0 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5591) PAC2 PF09754.9 gi|305662543|ref|YP_003858831.1| - 6.3e-36 124.4 0.0 7.6e-36 124.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT_C2 PF14810.6 gi|305662544|ref|YP_003858832.1| - 4.5e-14 52.3 0.0 1.1e-13 51.0 0.0 1.7 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|305662544|ref|YP_003858832.1| - 6.3e-10 38.9 0.1 9.3e-10 38.3 0.1 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|305662544|ref|YP_003858832.1| - 0.0056 16.9 0.1 0.0083 16.4 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain AAA PF00004.29 gi|305662545|ref|YP_003858833.1| - 1.1e-42 145.6 0.0 2.2e-42 144.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Prot_ATP_ID_OB PF16450.5 gi|305662545|ref|YP_003858833.1| - 3.2e-15 55.8 0.3 7.6e-15 54.6 0.3 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_lid_3 PF17862.1 gi|305662545|ref|YP_003858833.1| - 5.7e-15 54.8 0.4 1.4e-14 53.6 0.4 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|305662545|ref|YP_003858833.1| - 8.2e-07 29.3 0.0 2.2e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|305662545|ref|YP_003858833.1| - 1.6e-06 28.1 0.2 1.2e-05 25.3 0.2 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|305662545|ref|YP_003858833.1| - 4.8e-06 27.1 0.6 5.3e-05 23.7 0.3 2.8 2 1 0 2 2 1 1 AAA ATPase domain DUF815 PF05673.13 gi|305662545|ref|YP_003858833.1| - 7.3e-06 25.3 0.0 2.4e-05 23.6 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|305662545|ref|YP_003858833.1| - 2.3e-05 24.2 0.0 7e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Prot_ATP_OB_N PF17758.1 gi|305662545|ref|YP_003858833.1| - 2.4e-05 23.9 0.0 7.6e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_22 PF13401.6 gi|305662545|ref|YP_003858833.1| - 9.3e-05 22.7 0.4 0.014 15.7 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|305662545|ref|YP_003858833.1| - 0.00019 21.5 0.0 0.00048 20.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|305662545|ref|YP_003858833.1| - 0.00025 21.0 0.7 0.0027 17.7 0.0 2.7 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea TIP49 PF06068.13 gi|305662545|ref|YP_003858833.1| - 0.0017 17.6 0.0 0.0053 16.0 0.0 1.6 1 1 0 1 1 1 1 TIP49 P-loop domain RNA_helicase PF00910.22 gi|305662545|ref|YP_003858833.1| - 0.0018 18.6 0.0 0.0078 16.6 0.0 2.1 2 0 0 2 2 2 1 RNA helicase IstB_IS21 PF01695.17 gi|305662545|ref|YP_003858833.1| - 0.0021 17.8 0.0 0.0054 16.5 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.12 gi|305662545|ref|YP_003858833.1| - 0.0023 17.9 0.1 0.047 13.6 0.0 2.3 1 1 1 2 2 2 1 NACHT domain AAA_28 PF13521.6 gi|305662545|ref|YP_003858833.1| - 0.0048 17.1 0.0 0.0089 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|305662545|ref|YP_003858833.1| - 0.0049 16.8 0.4 5.4 6.9 0.1 3.2 2 1 0 2 2 2 0 NTPase Mg_chelatase PF01078.21 gi|305662545|ref|YP_003858833.1| - 0.0053 16.2 0.0 0.013 14.9 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ABC_tran PF00005.27 gi|305662545|ref|YP_003858833.1| - 0.0056 17.2 0.0 0.028 14.9 0.0 2.1 2 1 0 2 2 1 1 ABC transporter AAA_18 PF13238.6 gi|305662545|ref|YP_003858833.1| - 0.0067 17.0 0.0 0.028 15.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|305662545|ref|YP_003858833.1| - 0.011 15.0 0.0 0.022 14.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin bZIP_1 PF00170.21 gi|305662545|ref|YP_003858833.1| - 0.013 15.6 4.0 0.042 14.0 3.5 2.0 2 0 0 2 2 2 0 bZIP transcription factor AAA_33 PF13671.6 gi|305662545|ref|YP_003858833.1| - 0.014 15.6 0.0 0.026 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|305662545|ref|YP_003858833.1| - 0.014 14.5 0.0 0.03 13.4 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|305662545|ref|YP_003858833.1| - 0.019 14.8 0.0 0.043 13.7 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.18 gi|305662545|ref|YP_003858833.1| - 0.02 14.7 0.0 0.061 13.1 0.0 1.8 2 0 0 2 2 1 0 Bacterial dnaA protein FlaC_arch PF05377.11 gi|305662545|ref|YP_003858833.1| - 0.023 15.1 3.6 0.17 12.3 1.8 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) NB-ARC PF00931.22 gi|305662545|ref|YP_003858833.1| - 0.035 13.3 0.0 0.11 11.6 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.6 gi|305662545|ref|YP_003858833.1| - 0.045 13.5 0.0 0.085 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|305662545|ref|YP_003858833.1| - 0.045 13.1 0.2 0.26 10.6 0.2 2.2 1 1 0 1 1 1 0 KaiC P4Ha_N PF08336.11 gi|305662545|ref|YP_003858833.1| - 0.057 13.4 0.6 0.14 12.2 0.3 1.8 2 0 0 2 2 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Sigma54_activat PF00158.26 gi|305662545|ref|YP_003858833.1| - 0.058 13.1 0.0 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.6 gi|305662545|ref|YP_003858833.1| - 0.071 13.5 0.0 0.22 12.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|305662545|ref|YP_003858833.1| - 0.073 13.1 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|305662545|ref|YP_003858833.1| - 0.11 12.1 0.0 0.33 10.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain Viral_helicase1 PF01443.18 gi|305662545|ref|YP_003858833.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_7 PF12775.7 gi|305662545|ref|YP_003858833.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Rad17 PF03215.15 gi|305662545|ref|YP_003858833.1| - 0.11 12.4 0.1 0.45 10.4 0.0 2.0 1 1 0 1 1 1 0 Rad17 P-loop domain DUF3496 PF12001.8 gi|305662545|ref|YP_003858833.1| - 0.73 10.2 3.3 1.3 9.4 3.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3496) HTH_3 PF01381.22 gi|305662546|ref|YP_003858834.1| - 2.4e-09 37.1 1.0 2.4e-09 37.1 1.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|305662546|ref|YP_003858834.1| - 1.7e-07 31.2 0.8 4.9e-07 29.7 0.8 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|305662546|ref|YP_003858834.1| - 6e-07 29.7 0.0 1.4e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|305662546|ref|YP_003858834.1| - 0.0002 21.1 0.1 0.00038 20.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|305662546|ref|YP_003858834.1| - 0.02 15.0 1.4 0.15 12.2 0.0 2.3 1 1 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Cas_Cas1 PF01867.16 gi|305662546|ref|YP_003858834.1| - 0.024 13.8 0.2 0.027 13.6 0.2 1.1 1 0 0 1 1 1 0 CRISPR associated protein Cas1 HTH_37 PF13744.6 gi|305662546|ref|YP_003858834.1| - 0.045 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DZR PF12773.7 gi|305662546|ref|YP_003858834.1| - 0.063 13.3 0.3 0.1 12.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon MMR_HSR1 PF01926.23 gi|305662547|ref|YP_003858835.1| - 2.3e-19 69.5 0.6 6.5e-19 68.1 0.6 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|305662547|ref|YP_003858835.1| - 1.2e-15 57.8 1.4 2.2e-15 57.0 1.4 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|305662547|ref|YP_003858835.1| - 1.7e-13 51.1 0.1 3.6e-13 50.0 0.1 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.18 gi|305662547|ref|YP_003858835.1| - 8e-09 35.2 3.4 1.6e-08 34.2 2.9 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|305662547|ref|YP_003858835.1| - 5e-08 32.7 1.8 9.9e-06 25.2 1.8 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|305662547|ref|YP_003858835.1| - 1.5e-05 24.6 0.1 3.3e-05 23.5 0.1 1.6 1 1 0 1 1 1 1 Ras family Arf PF00025.21 gi|305662547|ref|YP_003858835.1| - 2.4e-05 23.9 4.9 2.7e-05 23.7 3.2 2.0 1 1 1 2 2 2 1 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|305662547|ref|YP_003858835.1| - 0.0012 18.9 0.5 0.27 11.3 0.2 2.5 1 1 1 2 2 2 2 Dynamin family SRPRB PF09439.10 gi|305662547|ref|YP_003858835.1| - 0.0015 18.0 3.6 0.0068 15.9 3.6 2.0 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit ABC_tran PF00005.27 gi|305662547|ref|YP_003858835.1| - 0.0023 18.5 0.4 0.0079 16.7 0.4 2.0 1 1 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|305662547|ref|YP_003858835.1| - 0.0023 17.8 3.2 0.66 9.9 0.6 2.8 3 0 0 3 3 3 2 RsgA GTPase PduV-EutP PF10662.9 gi|305662547|ref|YP_003858835.1| - 0.0041 16.9 2.9 0.052 13.3 2.9 2.5 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|305662547|ref|YP_003858835.1| - 0.015 15.3 3.2 0.048 13.7 3.3 2.0 1 1 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|305662547|ref|YP_003858835.1| - 0.016 15.4 0.1 0.11 12.7 0.1 2.2 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|305662547|ref|YP_003858835.1| - 0.025 14.4 0.5 0.49 10.1 0.1 2.2 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|305662547|ref|YP_003858835.1| - 0.031 13.9 4.6 0.52 9.9 1.0 2.5 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.20 gi|305662547|ref|YP_003858835.1| - 0.04 13.1 4.8 0.56 9.3 0.2 2.2 1 1 1 2 2 2 0 G-protein alpha subunit Trm56 PF01994.16 gi|305662548|ref|YP_003858836.1| - 7.1e-45 151.8 0.1 9.2e-45 151.4 0.1 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.17 gi|305662549|ref|YP_003858837.1| - 1.6e-17 63.3 2.5 2.7e-17 62.5 2.5 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.6 gi|305662549|ref|YP_003858837.1| - 0.00068 19.5 0.0 0.022 14.7 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_9 PF08221.11 gi|305662549|ref|YP_003858837.1| - 0.0011 19.1 0.0 0.0076 16.3 0.0 2.1 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Sigma70_r3 PF04539.16 gi|305662549|ref|YP_003858837.1| - 0.0022 18.1 0.4 0.0078 16.3 0.0 2.0 2 0 0 2 2 2 1 Sigma-70 region 3 TF_Zn_Ribbon PF08271.12 gi|305662549|ref|YP_003858837.1| - 0.0088 15.5 1.0 0.015 14.8 1.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TrmB PF01978.19 gi|305662549|ref|YP_003858837.1| - 0.014 15.3 0.0 0.03 14.2 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 gi|305662549|ref|YP_003858837.1| - 0.019 15.4 1.2 0.65 10.5 0.1 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|305662549|ref|YP_003858837.1| - 0.022 15.1 0.1 0.041 14.2 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator RPA_C PF08784.11 gi|305662549|ref|YP_003858837.1| - 0.039 14.6 0.0 0.075 13.7 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal z-alpha PF02295.17 gi|305662549|ref|YP_003858837.1| - 0.044 13.8 0.1 0.094 12.8 0.1 1.6 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_IclR PF09339.10 gi|305662549|ref|YP_003858837.1| - 0.051 13.4 0.0 0.22 11.3 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF4217 PF13959.6 gi|305662549|ref|YP_003858837.1| - 0.052 13.8 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4217) HTH_24 PF13412.6 gi|305662549|ref|YP_003858837.1| - 0.085 12.4 2.1 0.21 11.2 0.0 2.4 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding HypA PF01155.19 gi|305662549|ref|YP_003858837.1| - 0.086 12.9 0.1 0.14 12.2 0.1 1.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_23 PF13384.6 gi|305662549|ref|YP_003858837.1| - 0.1 12.4 0.0 0.34 10.8 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain IF2_N PF04760.15 gi|305662549|ref|YP_003858837.1| - 0.13 12.1 3.2 0.98 9.3 0.0 3.2 3 1 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region DNA_methylase PF00145.17 gi|305662550|ref|YP_003858838.1| - 3.7e-48 164.6 0.0 4.8e-46 157.6 0.0 2.0 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|305662550|ref|YP_003858838.1| - 0.00081 19.0 0.1 0.0015 18.1 0.1 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|305662550|ref|YP_003858838.1| - 0.015 16.0 0.0 0.031 15.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF2122 PF09895.9 gi|305662551|ref|YP_003858839.1| - 2.1e-19 69.8 0.1 2.8e-19 69.5 0.1 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) Radical_SAM PF04055.21 gi|305662552|ref|YP_003858840.1| - 5.4e-15 56.2 0.0 1.1e-14 55.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Perm-CXXC PF15629.6 gi|305662553|ref|YP_003858841.1| - 0.37 11.1 6.1 3.3 8.1 0.6 3.1 3 0 0 3 3 3 0 Permuted single zf-CXXC unit DUF87 PF01935.17 gi|305662554|ref|YP_003858842.1| - 4.5e-30 105.4 0.8 8.6e-30 104.5 0.8 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|305662554|ref|YP_003858842.1| - 1.5e-10 40.4 0.0 0.00014 20.6 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|305662554|ref|YP_003858842.1| - 3.6e-09 36.0 0.0 3.2e-07 29.6 0.0 2.3 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|305662554|ref|YP_003858842.1| - 5e-05 23.6 0.0 0.16 12.2 0.0 2.7 3 0 0 3 3 2 2 AAA domain ResIII PF04851.15 gi|305662554|ref|YP_003858842.1| - 0.0002 21.4 0.0 0.76 9.8 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_31 PF13614.6 gi|305662554|ref|YP_003858842.1| - 0.00024 21.1 4.0 0.0077 16.2 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|305662554|ref|YP_003858842.1| - 0.00039 20.8 0.0 0.0028 18.0 0.0 2.3 2 1 0 2 2 1 1 AAA ATPase domain AAA PF00004.29 gi|305662554|ref|YP_003858842.1| - 0.00057 20.3 0.9 0.82 10.1 0.1 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|305662554|ref|YP_003858842.1| - 0.0011 19.5 0.0 0.0026 18.3 0.0 1.7 1 0 0 1 1 1 1 ABC transporter CbiA PF01656.23 gi|305662554|ref|YP_003858842.1| - 0.0035 17.4 0.0 0.008 16.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|305662554|ref|YP_003858842.1| - 0.0049 16.2 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DEAD PF00270.29 gi|305662554|ref|YP_003858842.1| - 0.006 16.4 0.0 4.3 7.1 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_10 PF12846.7 gi|305662554|ref|YP_003858842.1| - 0.0077 15.2 0.0 0.015 14.2 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|305662554|ref|YP_003858842.1| - 0.0092 15.4 0.0 0.037 13.4 0.1 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_30 PF13604.6 gi|305662554|ref|YP_003858842.1| - 0.014 15.1 0.1 0.22 11.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|305662554|ref|YP_003858842.1| - 0.016 14.8 0.0 0.031 13.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|305662554|ref|YP_003858842.1| - 0.019 15.5 0.1 0.081 13.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|305662554|ref|YP_003858842.1| - 0.024 14.4 0.0 0.068 13.0 0.0 1.8 2 0 0 2 2 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop T2SSE PF00437.20 gi|305662554|ref|YP_003858842.1| - 0.028 13.5 0.0 0.049 12.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|305662554|ref|YP_003858842.1| - 0.047 13.4 0.0 0.17 11.6 0.0 1.9 1 0 0 1 1 1 0 IstB-like ATP binding protein RuvB_N PF05496.12 gi|305662554|ref|YP_003858842.1| - 0.052 13.3 0.2 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain TraG-D_C PF12696.7 gi|305662554|ref|YP_003858842.1| - 0.068 13.2 0.0 0.37 10.8 0.0 2.2 3 0 0 3 3 3 0 TraM recognition site of TraD and TraG AAA_7 PF12775.7 gi|305662554|ref|YP_003858842.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|305662554|ref|YP_003858842.1| - 0.13 12.5 0.2 0.23 11.7 0.2 1.4 1 0 0 1 1 1 0 AAA domain Cpn60_TCP1 PF00118.24 gi|305662555|ref|YP_003858843.1| - 1.1e-175 585.0 10.9 1.3e-175 584.8 10.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family BLYB PF05289.11 gi|305662555|ref|YP_003858843.1| - 0.08 13.2 0.9 2.6 8.3 0.0 3.1 3 0 0 3 3 3 0 Borrelia hemolysin accessory protein Ribosomal_60s PF00428.19 gi|305662555|ref|YP_003858843.1| - 0.68 10.6 5.8 2.2 8.9 0.9 3.3 3 0 0 3 3 3 0 60s Acidic ribosomal protein Ribosomal_S17e PF00833.18 gi|305662556|ref|YP_003858844.1| - 9.5e-17 61.0 0.3 1.1e-16 60.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S17 ThiS PF02597.20 gi|305662557|ref|YP_003858845.1| - 0.0024 18.5 0.0 0.0027 18.3 0.0 1.2 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|305662557|ref|YP_003858845.1| - 0.011 16.1 1.9 0.015 15.6 1.9 1.3 1 1 0 1 1 1 0 Urm1 (Ubiquitin related modifier) DUF4562 PF15123.6 gi|305662558|ref|YP_003858846.1| - 0.025 14.5 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4562) ABC_tran PF00005.27 gi|305662559|ref|YP_003858847.1| - 9.7e-38 129.8 0.0 2.4e-18 67.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|305662559|ref|YP_003858847.1| - 1.4e-13 51.3 7.6 0.0072 16.2 0.3 4.3 2 2 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305662559|ref|YP_003858847.1| - 1.1e-08 34.8 8.3 0.0062 16.0 0.2 3.9 3 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|305662559|ref|YP_003858847.1| - 2.1e-08 33.8 3.2 2.1e-08 33.8 3.2 2.5 3 0 0 3 3 2 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|305662559|ref|YP_003858847.1| - 4.8e-07 29.3 5.7 4.8e-07 29.3 5.7 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_23 PF13476.6 gi|305662559|ref|YP_003858847.1| - 9.3e-06 26.3 0.1 0.11 13.0 0.0 2.8 3 0 0 3 3 2 2 AAA domain MMR_HSR1 PF01926.23 gi|305662559|ref|YP_003858847.1| - 3.6e-05 23.8 0.5 0.031 14.4 0.0 3.7 3 1 0 3 3 3 1 50S ribosome-binding GTPase Fer4_6 PF12837.7 gi|305662559|ref|YP_003858847.1| - 5.2e-05 23.1 14.1 0.0022 18.0 3.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|305662559|ref|YP_003858847.1| - 0.00015 21.8 12.2 0.0011 19.0 1.7 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|305662559|ref|YP_003858847.1| - 0.00023 21.7 6.1 0.00031 21.2 4.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain AAA_15 PF13175.6 gi|305662559|ref|YP_003858847.1| - 0.00035 20.4 0.7 0.59 9.8 0.0 3.3 2 1 0 3 3 3 1 AAA ATPase domain AAA_16 PF13191.6 gi|305662559|ref|YP_003858847.1| - 0.00062 20.2 0.0 0.058 13.8 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|305662559|ref|YP_003858847.1| - 0.00069 19.6 0.1 0.34 10.8 0.0 2.6 2 1 0 2 2 2 1 Rad17 P-loop domain Fer4_2 PF12797.7 gi|305662559|ref|YP_003858847.1| - 0.00078 19.4 1.3 0.00078 19.4 1.3 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|305662559|ref|YP_003858847.1| - 0.0011 19.0 8.2 0.0011 19.0 8.2 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|305662559|ref|YP_003858847.1| - 0.0012 18.9 8.6 0.0012 18.9 8.6 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|305662559|ref|YP_003858847.1| - 0.0012 18.6 0.1 1.5 8.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain Fer4_16 PF13484.6 gi|305662559|ref|YP_003858847.1| - 0.0018 19.2 7.2 0.0046 17.9 0.4 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_18 PF13238.6 gi|305662559|ref|YP_003858847.1| - 0.004 17.7 0.4 1.1 9.8 0.0 3.3 2 1 1 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|305662559|ref|YP_003858847.1| - 0.0043 17.2 0.7 0.75 9.9 0.0 2.9 3 0 0 3 3 2 1 AAA domain RecA PF00154.21 gi|305662559|ref|YP_003858847.1| - 0.0074 15.8 0.3 1.9 7.9 0.0 2.6 2 0 0 2 2 2 1 recA bacterial DNA recombination protein RuvB_N PF05496.12 gi|305662559|ref|YP_003858847.1| - 0.015 15.0 0.0 3.3 7.4 0.0 2.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_29 PF13555.6 gi|305662559|ref|YP_003858847.1| - 0.017 14.9 0.4 3.7 7.4 0.1 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA PF00004.29 gi|305662559|ref|YP_003858847.1| - 0.02 15.3 0.7 12 6.4 0.0 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|305662559|ref|YP_003858847.1| - 0.029 14.4 5.2 1.9 8.6 0.3 3.6 2 2 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|305662559|ref|YP_003858847.1| - 0.031 14.0 0.2 1.3 8.7 0.3 2.6 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|305662559|ref|YP_003858847.1| - 0.033 14.6 1.0 11 6.5 0.0 3.5 4 0 0 4 4 2 0 RNA helicase TsaE PF02367.17 gi|305662559|ref|YP_003858847.1| - 0.061 13.3 0.1 7.4 6.6 0.0 2.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|305662559|ref|YP_003858847.1| - 0.061 13.2 0.0 9.5 6.1 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase Dynamin_N PF00350.23 gi|305662559|ref|YP_003858847.1| - 0.062 13.4 0.3 0.15 12.1 0.0 1.8 2 0 0 2 2 1 0 Dynamin family Fer4_17 PF13534.6 gi|305662559|ref|YP_003858847.1| - 0.074 13.6 7.7 0.61 10.7 1.9 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain MobB PF03205.14 gi|305662559|ref|YP_003858847.1| - 0.081 12.8 0.5 1.2 9.1 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.18 gi|305662559|ref|YP_003858847.1| - 0.1 12.3 0.0 23 4.7 0.0 2.8 3 0 0 3 3 3 0 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.6 gi|305662559|ref|YP_003858847.1| - 0.12 12.6 1.6 27 5.0 0.0 3.0 3 0 0 3 3 2 0 AAA domain Terpene_synth PF01397.21 gi|305662559|ref|YP_003858847.1| - 0.15 11.7 0.3 0.34 10.5 0.0 1.7 2 0 0 2 2 2 0 Terpene synthase, N-terminal domain Fer4_8 PF13183.6 gi|305662559|ref|YP_003858847.1| - 2.5 8.6 6.9 0.97 9.9 2.4 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain FBPase_3 PF01950.16 gi|305662560|ref|YP_003858848.1| - 8.6e-187 620.6 0.0 9.9e-187 620.4 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase TIM PF00121.18 gi|305662561|ref|YP_003858849.1| - 1.7e-15 57.0 0.1 6.6e-13 48.6 0.0 2.1 1 1 1 2 2 2 2 Triosephosphate isomerase IGPS PF00218.21 gi|305662561|ref|YP_003858849.1| - 9.2e-07 28.3 1.9 1.6e-06 27.5 0.6 2.0 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase ThiG PF05690.14 gi|305662561|ref|YP_003858849.1| - 8.1e-06 25.3 7.1 1.6e-05 24.4 7.1 1.7 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|305662561|ref|YP_003858849.1| - 0.0027 17.2 4.0 0.0031 17.0 1.2 2.3 2 1 1 3 3 3 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|305662561|ref|YP_003858849.1| - 0.014 14.6 1.6 0.021 14.0 1.6 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF561 PF04481.12 gi|305662561|ref|YP_003858849.1| - 0.039 13.1 5.0 0.49 9.5 5.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF561) NMO PF03060.15 gi|305662561|ref|YP_003858849.1| - 0.048 13.0 6.2 0.019 14.4 3.8 1.6 2 0 0 2 2 2 0 Nitronate monooxygenase Phage_integr_3 PF16795.5 gi|305662562|ref|YP_003858850.1| - 5.5e-09 36.1 0.5 5.3e-08 32.9 0.5 2.3 1 1 0 1 1 1 1 Archaeal phage integrase Phage_int_SAM_5 PF13102.6 gi|305662562|ref|YP_003858850.1| - 0.005 17.2 0.4 0.023 15.0 0.0 2.3 2 1 0 2 2 2 1 Phage integrase SAM-like domain PhnG PF06754.12 gi|305662562|ref|YP_003858850.1| - 0.014 15.4 0.0 0.023 14.7 0.0 1.3 1 0 0 1 1 1 0 Phosphonate metabolism protein PhnG ABC2_membrane_5 PF13346.6 gi|305662563|ref|YP_003858851.1| - 4.4 6.8 45.0 2.3 7.7 22.0 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein ECSCR PF15820.5 gi|305662564|ref|YP_003858852.1| - 0.0048 16.7 0.8 0.0048 16.7 0.8 1.9 2 0 0 2 2 2 1 Endothelial cell-specific chemotaxis regulator WBP-1 PF11669.8 gi|305662564|ref|YP_003858852.1| - 0.058 14.0 1.2 0.13 12.9 1.2 1.6 1 0 0 1 1 1 0 WW domain-binding protein 1 EphA2_TM PF14575.6 gi|305662564|ref|YP_003858852.1| - 0.21 12.5 0.2 0.21 12.5 0.2 1.9 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain Stevor PF17410.2 gi|305662564|ref|YP_003858852.1| - 0.99 8.9 8.4 1.7 8.2 8.4 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame TMEM154 PF15102.6 gi|305662564|ref|YP_003858852.1| - 3.4 7.6 14.5 8.1 6.3 14.5 1.7 1 1 0 1 1 1 0 TMEM154 protein family DUF5305 PF17231.2 gi|305662564|ref|YP_003858852.1| - 5.7 6.3 15.1 16 4.8 15.1 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF5305) DUF2583 PF10762.9 gi|305662565|ref|YP_003858853.1| - 0.22 12.0 5.0 3.1 8.3 1.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) T2SSE PF00437.20 gi|305662566|ref|YP_003858854.1| - 3.7e-26 91.8 0.0 6.2e-26 91.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|305662566|ref|YP_003858854.1| - 2.1e-05 25.0 0.0 0.0002 21.9 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_28 PF13521.6 gi|305662566|ref|YP_003858854.1| - 0.001 19.3 0.0 0.0023 18.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain SpvD PF05563.12 gi|305662566|ref|YP_003858854.1| - 0.0012 18.5 0.4 0.0032 17.1 0.4 1.6 1 0 0 1 1 1 1 Salmonella plasmid virulence protein SpvD AAA_22 PF13401.6 gi|305662566|ref|YP_003858854.1| - 0.0016 18.7 0.0 0.038 14.2 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_21 PF13304.6 gi|305662566|ref|YP_003858854.1| - 0.0018 18.1 0.9 0.042 13.7 0.1 2.4 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|305662566|ref|YP_003858854.1| - 0.0034 17.1 0.9 0.0072 16.0 0.5 1.8 1 1 1 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|305662566|ref|YP_003858854.1| - 0.0044 16.9 0.2 0.038 13.9 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase CaMKII_AD PF08332.10 gi|305662566|ref|YP_003858854.1| - 0.007 16.5 0.0 0.021 15.0 0.0 1.7 1 0 0 1 1 1 1 Calcium/calmodulin dependent protein kinase II association domain MobB PF03205.14 gi|305662566|ref|YP_003858854.1| - 0.014 15.3 0.0 0.044 13.7 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 gi|305662566|ref|YP_003858854.1| - 0.014 15.1 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|305662566|ref|YP_003858854.1| - 0.014 15.4 0.4 0.082 13.0 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.19 gi|305662566|ref|YP_003858854.1| - 0.017 14.7 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|305662566|ref|YP_003858854.1| - 0.031 14.7 0.1 0.11 12.8 0.0 2.1 2 1 0 2 2 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|305662566|ref|YP_003858854.1| - 0.034 14.5 0.0 0.079 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|305662566|ref|YP_003858854.1| - 0.05 14.0 0.0 0.34 11.3 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|305662566|ref|YP_003858854.1| - 0.071 13.6 1.7 0.13 12.8 0.5 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|305662566|ref|YP_003858854.1| - 0.092 12.5 1.0 0.51 10.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|305662566|ref|YP_003858854.1| - 0.093 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain FtsK_SpoIIIE PF01580.18 gi|305662566|ref|YP_003858854.1| - 0.094 12.1 0.2 0.22 10.8 0.1 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|305662566|ref|YP_003858854.1| - 0.18 10.7 0.0 0.3 10.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Ribosomal_L2_C PF03947.18 gi|305662567|ref|YP_003858855.1| - 1.1e-45 154.9 1.4 1.3e-45 154.7 0.4 1.5 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|305662567|ref|YP_003858855.1| - 1.6e-14 53.6 0.0 1.1e-13 51.0 0.0 2.2 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|305662568|ref|YP_003858856.1| - 5.1e-30 103.2 1.1 6.4e-30 102.9 0.5 1.4 2 0 0 2 2 2 1 Ribosomal protein S19 SKI PF01202.22 gi|305662568|ref|YP_003858856.1| - 0.022 14.9 0.1 0.028 14.5 0.1 1.1 1 0 0 1 1 1 0 Shikimate kinase Peptidase_M24 PF00557.24 gi|305662568|ref|YP_003858856.1| - 0.039 13.7 0.0 0.049 13.3 0.0 1.1 1 0 0 1 1 1 0 Metallopeptidase family M24 Ribosomal_L23 PF00276.20 gi|305662570|ref|YP_003858858.1| - 2.6e-13 50.1 6.8 3.6e-12 46.5 6.8 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 DnaJ PF00226.31 gi|305662570|ref|YP_003858858.1| - 0.027 14.6 1.0 2.9 8.1 0.4 2.4 1 1 1 2 2 2 0 DnaJ domain Ribosomal_L4 PF00573.22 gi|305662571|ref|YP_003858859.1| - 4.2e-36 124.4 0.0 4.9e-36 124.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|305662572|ref|YP_003858860.1| - 4.5e-74 249.6 0.0 5.4e-74 249.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 RhodobacterPufX PF11511.8 gi|305662576|ref|YP_003858864.1| - 0.041 13.5 0.8 0.32 10.6 0.1 2.0 2 0 0 2 2 2 0 Intrinsic membrane protein PufX DEAD PF00270.29 gi|305662577|ref|YP_003858865.1| - 5e-28 98.0 0.3 2.2e-27 96.0 0.1 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|305662577|ref|YP_003858865.1| - 2.7e-20 72.7 3.7 2.5e-18 66.4 0.6 3.8 2 1 1 4 4 4 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|305662577|ref|YP_003858865.1| - 3.6e-19 69.3 0.0 1.2e-18 67.6 0.0 1.9 1 1 0 1 1 1 1 DEAD/H associated ResIII PF04851.15 gi|305662577|ref|YP_003858865.1| - 0.00016 21.7 0.0 0.00054 20.0 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|305662577|ref|YP_003858865.1| - 0.0021 18.4 0.0 0.0086 16.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain DUF2540 PF10802.8 gi|305662577|ref|YP_003858865.1| - 0.0036 17.4 12.5 0.022 14.9 2.1 4.0 3 0 0 3 3 3 2 Protein of unknown function (DUF2540) HypA PF01155.19 gi|305662577|ref|YP_003858865.1| - 0.006 16.6 0.4 0.029 14.4 0.3 2.1 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UvrD-helicase PF00580.21 gi|305662577|ref|YP_003858865.1| - 0.0072 15.9 2.2 0.82 9.1 0.0 3.2 2 1 1 3 3 3 1 UvrD/REP helicase N-terminal domain AAA_22 PF13401.6 gi|305662577|ref|YP_003858865.1| - 0.067 13.5 0.9 0.71 10.1 0.6 2.7 2 1 0 2 2 2 0 AAA domain RtcB PF01139.17 gi|305662579|ref|YP_003858867.1| - 1.7e-158 528.2 0.0 1.9e-158 528.0 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Pribosyltran PF00156.27 gi|305662580|ref|YP_003858868.1| - 9.3e-16 57.7 0.0 1.4e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|305662580|ref|YP_003858868.1| - 0.034 13.6 0.0 0.054 12.9 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Rad51 PF08423.11 gi|305662581|ref|YP_003858869.1| - 1.8e-05 24.1 0.3 0.00011 21.5 0.3 2.0 1 1 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|305662581|ref|YP_003858869.1| - 0.00021 21.0 0.0 0.0003 20.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|305662581|ref|YP_003858869.1| - 0.00053 19.8 0.5 0.0046 16.7 0.0 2.3 1 1 1 2 2 2 1 AAA domain ATPase PF06745.13 gi|305662581|ref|YP_003858869.1| - 0.0032 16.8 0.8 0.11 11.8 0.8 2.1 1 1 0 1 1 1 1 KaiC DAP3 PF10236.9 gi|305662581|ref|YP_003858869.1| - 0.0047 16.1 0.1 0.91 8.6 0.0 2.1 1 1 0 2 2 2 2 Mitochondrial ribosomal death-associated protein 3 ATPase_2 PF01637.18 gi|305662581|ref|YP_003858869.1| - 0.0055 16.7 0.5 0.026 14.4 0.2 2.1 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea Pox_A32 PF04665.12 gi|305662581|ref|YP_003858869.1| - 0.0058 16.1 0.8 0.028 13.9 0.0 2.2 2 1 0 2 2 2 1 Poxvirus A32 protein AAA_22 PF13401.6 gi|305662581|ref|YP_003858869.1| - 0.0086 16.3 0.0 0.016 15.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|305662581|ref|YP_003858869.1| - 0.031 13.8 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|305662581|ref|YP_003858869.1| - 0.043 13.0 0.0 0.05 12.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|305662581|ref|YP_003858869.1| - 0.06 13.7 0.0 0.14 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|305662581|ref|YP_003858869.1| - 0.064 13.7 0.0 0.1 13.0 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|305662581|ref|YP_003858869.1| - 0.09 12.8 0.0 0.28 11.2 0.0 1.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|305662581|ref|YP_003858869.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 NACHT domain Viral_helicase1 PF01443.18 gi|305662581|ref|YP_003858869.1| - 0.21 11.3 0.0 0.47 10.2 0.0 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Nop10p PF04135.12 gi|305662582|ref|YP_003858870.1| - 1.1e-23 83.0 3.9 1.3e-23 82.8 3.9 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|305662582|ref|YP_003858870.1| - 4.1e-07 29.5 0.6 5.1e-07 29.1 0.6 1.2 1 0 0 1 1 1 1 RecR protein Prok-RING_1 PF14446.6 gi|305662582|ref|YP_003858870.1| - 0.071 13.0 0.8 0.11 12.5 0.8 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|305662582|ref|YP_003858870.1| - 0.094 12.2 4.3 3.1 7.3 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain PolC_DP2 PF03833.13 gi|305662582|ref|YP_003858870.1| - 0.18 9.6 0.1 0.15 9.9 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-C3HC4_3 PF13920.6 gi|305662582|ref|YP_003858870.1| - 0.3 11.0 6.8 3.5 7.6 0.5 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) TF_Zn_Ribbon PF08271.12 gi|305662582|ref|YP_003858870.1| - 0.43 10.1 4.0 2.6 7.6 0.3 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-C2H2_12 PF18112.1 gi|305662582|ref|YP_003858870.1| - 0.55 10.8 7.5 1.9 9.0 0.8 2.4 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Prok-RING_4 PF14447.6 gi|305662582|ref|YP_003858870.1| - 1.1 9.1 6.4 2.1 8.3 0.3 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 zf-C4H2 PF10146.9 gi|305662582|ref|YP_003858870.1| - 1.6 9.0 5.5 2.2 8.5 5.5 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein Cys_rich_KTR PF14205.6 gi|305662582|ref|YP_003858870.1| - 1.8 8.4 7.6 2.6 7.9 1.1 2.2 1 1 1 2 2 2 0 Cysteine-rich KTR zf-C2H2_4 PF13894.6 gi|305662582|ref|YP_003858870.1| - 1.8 9.6 5.8 19 6.4 0.5 2.6 2 1 1 3 3 3 0 C2H2-type zinc finger zf-C2HC_2 PF13913.6 gi|305662582|ref|YP_003858870.1| - 3 7.9 8.6 1.1 9.3 1.4 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type EIF_2_alpha PF07541.12 gi|305662583|ref|YP_003858871.1| - 2.2e-22 79.3 0.9 1.5e-21 76.7 0.1 2.3 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|305662583|ref|YP_003858871.1| - 5.8e-11 42.6 3.1 6.5e-11 42.4 1.1 2.0 2 0 0 2 2 2 1 S1 RNA binding domain EXOSC1 PF10447.9 gi|305662583|ref|YP_003858871.1| - 3.2e-06 27.7 3.1 0.0036 17.9 0.0 3.4 1 1 2 3 3 3 2 Exosome component EXOSC1/CSL4 TRAM PF01938.20 gi|305662583|ref|YP_003858871.1| - 0.056 13.4 0.1 2 8.4 0.1 2.6 2 0 0 2 2 2 0 TRAM domain Ribosomal_S27e PF01667.17 gi|305662584|ref|YP_003858872.1| - 7.1e-21 73.7 1.1 7.8e-21 73.5 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|305662584|ref|YP_003858872.1| - 0.00018 20.9 1.9 0.00024 20.5 1.9 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Desulfoferrod_N PF06397.12 gi|305662584|ref|YP_003858872.1| - 0.0018 17.9 5.3 0.22 11.1 0.2 2.2 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain HypA PF01155.19 gi|305662584|ref|YP_003858872.1| - 0.0079 16.2 0.1 0.0088 16.1 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_pol_N PF01194.17 gi|305662584|ref|YP_003858872.1| - 0.012 15.9 2.1 0.026 14.8 0.1 2.0 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit zinc_ribbon_6 PF14599.6 gi|305662584|ref|YP_003858872.1| - 0.1 12.6 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon zf-Sec23_Sec24 PF04810.15 gi|305662584|ref|YP_003858872.1| - 0.22 11.6 3.3 10 6.3 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DNA_RNApol_7kD PF03604.13 gi|305662584|ref|YP_003858872.1| - 0.36 10.5 3.4 0.73 9.6 2.0 2.2 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.18 gi|305662584|ref|YP_003858872.1| - 0.36 10.2 2.7 3.4 7.1 0.4 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zinc_ribbon_4 PF13717.6 gi|305662584|ref|YP_003858872.1| - 0.92 9.5 5.0 9 6.3 0.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-BED PF02892.15 gi|305662584|ref|YP_003858872.1| - 1.9 8.5 4.0 17 5.5 0.8 2.2 1 1 1 2 2 2 0 BED zinc finger Ribosomal_L44 PF00935.19 gi|305662585|ref|YP_003858873.1| - 4.3e-27 94.4 12.4 6.2e-27 93.9 12.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|305662585|ref|YP_003858873.1| - 0.0019 17.5 1.3 0.44 10.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Mu-like_Com PF10122.9 gi|305662585|ref|YP_003858873.1| - 0.0022 17.4 4.6 0.035 13.5 0.1 2.4 2 1 0 2 2 2 1 Mu-like prophage protein Com zinc_ribbon_4 PF13717.6 gi|305662585|ref|YP_003858873.1| - 0.016 15.1 5.1 0.12 12.3 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain T4_baseplate PF12322.8 gi|305662585|ref|YP_003858873.1| - 0.1 12.1 1.7 0.39 10.2 0.2 1.9 2 0 0 2 2 2 0 T4 bacteriophage base plate protein RNA_POL_M_15KD PF02150.16 gi|305662585|ref|YP_003858873.1| - 0.16 11.9 1.0 0.93 9.4 0.1 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|305662585|ref|YP_003858873.1| - 0.17 11.9 2.3 0.54 10.3 2.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon RecR PF02132.15 gi|305662585|ref|YP_003858873.1| - 0.18 11.4 1.9 4.5 6.9 0.4 2.2 2 0 0 2 2 2 0 RecR protein Zn_Tnp_IS1 PF03811.13 gi|305662585|ref|YP_003858873.1| - 0.2 11.4 5.0 0.15 11.8 1.7 2.3 2 1 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_2 PF13240.6 gi|305662585|ref|YP_003858873.1| - 0.26 11.1 4.1 6.6 6.6 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CxC5 PF18718.1 gi|305662585|ref|YP_003858873.1| - 0.26 11.4 6.6 0.12 12.5 1.7 2.0 1 1 1 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases Ribosomal_S8e PF01201.22 gi|305662585|ref|YP_003858873.1| - 0.41 10.8 6.4 0.48 10.6 6.4 1.1 1 0 0 1 1 1 0 Ribosomal protein S8e zinc_ribbon_5 PF13719.6 gi|305662585|ref|YP_003858873.1| - 3.3 7.6 7.6 2.5 7.9 1.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_primase_S PF01896.19 gi|305662587|ref|YP_003858875.1| - 1e-14 55.0 2.4 4.7e-14 52.8 0.3 2.5 2 1 0 2 2 2 1 DNA primase small subunit Glyoxalase_2 PF12681.7 gi|305662587|ref|YP_003858875.1| - 0.00051 20.0 3.5 0.19 11.7 0.2 2.8 2 1 0 2 2 2 2 Glyoxalase-like domain Ribosomal_L37e PF01907.19 gi|305662587|ref|YP_003858875.1| - 0.053 13.7 1.8 0.061 13.5 0.4 1.7 2 0 0 2 2 2 0 Ribosomal protein L37e Spt4 PF06093.13 gi|305662587|ref|YP_003858875.1| - 0.067 13.3 1.0 0.14 12.3 1.0 1.5 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger P3A PF08727.11 gi|305662587|ref|YP_003858875.1| - 0.11 11.8 0.5 11 5.5 0.1 3.2 2 1 1 3 3 3 0 Poliovirus 3A protein like DZR PF12773.7 gi|305662587|ref|YP_003858875.1| - 0.13 12.3 6.7 0.35 10.9 6.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|305662587|ref|YP_003858875.1| - 0.69 9.4 5.4 4.6 6.8 0.4 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Chordopox_A30L PF06015.12 gi|305662587|ref|YP_003858875.1| - 1.8 8.4 6.0 0.48 10.3 1.3 2.5 3 0 0 3 3 3 0 Chordopoxvirus A30L protein PCNA_N PF00705.18 gi|305662588|ref|YP_003858876.1| - 5.4e-14 52.0 0.0 1.7e-13 50.4 0.0 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|305662588|ref|YP_003858876.1| - 4.7e-05 23.6 0.0 0.0001 22.4 0.0 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|305662588|ref|YP_003858876.1| - 0.0034 16.9 0.0 0.0046 16.4 0.0 1.2 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.16 gi|305662588|ref|YP_003858876.1| - 0.0042 16.2 0.4 0.047 12.8 0.1 2.0 1 1 1 2 2 2 1 Repair protein Rad1/Rec1/Rad17 DUF3794 PF12673.7 gi|305662589|ref|YP_003858877.1| - 0.16 12.3 0.0 0.32 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3794) DUF72 PF01904.18 gi|305662591|ref|YP_003858879.1| - 4.7e-32 111.9 0.0 6.1e-32 111.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|305662591|ref|YP_003858879.1| - 0.17 11.3 0.0 0.36 10.2 0.0 1.6 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel DUF2179 PF10035.9 gi|305662591|ref|YP_003858879.1| - 1.2 8.9 4.8 4.6 7.1 0.1 3.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2179) MazE_antitoxin PF04014.18 gi|305662592|ref|YP_003858880.1| - 8.4e-09 35.2 0.2 1.2e-08 34.7 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|305662592|ref|YP_003858880.1| - 0.0056 16.6 0.0 0.0095 15.9 0.0 1.5 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like PrlF_antitoxin PF15937.5 gi|305662592|ref|YP_003858880.1| - 0.013 15.9 0.0 0.021 15.3 0.0 1.5 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin PCNA_C PF02747.15 gi|305662593|ref|YP_003858881.1| - 7.3e-09 35.9 0.0 1.7e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|305662593|ref|YP_003858881.1| - 1e-07 31.7 0.1 2.8e-07 30.3 0.0 1.8 3 0 0 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain DUF2779 PF11074.8 gi|305662593|ref|YP_003858881.1| - 0.13 12.8 0.4 0.48 10.9 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function(DUF2779) Tk-SP_N-pro PF18237.1 gi|305662594|ref|YP_003858882.1| - 0.004 17.2 0.7 0.0077 16.2 0.7 1.6 1 0 0 1 1 1 1 Tk-SP N-propeptide domain RNA_pol_Rpo13 PF12136.8 gi|305662595|ref|YP_003858883.1| - 3e-08 33.5 1.6 3e-08 33.5 1.6 1.8 2 0 0 2 2 2 1 RNA polymerase Rpo13 subunit HTH domain Ribosomal_L22 PF00237.19 gi|305662596|ref|YP_003858884.1| - 2.2e-25 88.9 0.1 2.7e-25 88.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|305662597|ref|YP_003858885.1| - 3.4e-23 82.0 0.8 6.1e-23 81.2 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|305662597|ref|YP_003858885.1| - 2.3e-12 46.6 0.0 6.3e-12 45.1 0.0 1.8 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|305662597|ref|YP_003858885.1| - 0.00018 21.3 0.2 0.00042 20.1 0.2 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|305662597|ref|YP_003858885.1| - 0.11 12.4 0.5 0.29 11.0 0.2 1.9 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.23 gi|305662598|ref|YP_003858886.1| - 7.6e-19 67.4 3.5 9.9e-19 67.1 3.5 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Enkurin PF13864.6 gi|305662598|ref|YP_003858886.1| - 0.024 15.1 0.2 0.024 15.1 0.2 1.2 1 0 0 1 1 1 0 Calmodulin-binding UPF0086 PF01868.16 gi|305662599|ref|YP_003858887.1| - 3.5e-20 71.7 0.0 3.9e-20 71.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|305662600|ref|YP_003858888.1| - 2.3e-25 88.5 0.2 2.8e-25 88.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|305662600|ref|YP_003858888.1| - 0.00037 20.8 0.0 0.00069 20.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|305662601|ref|YP_003858889.1| - 9.5e-39 132.3 0.4 1.2e-38 131.9 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|305662602|ref|YP_003858890.1| - 1.3e-28 99.3 0.1 1.6e-28 99.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|305662602|ref|YP_003858890.1| - 8.7e-08 31.9 3.2 1.6e-07 31.0 3.2 1.5 1 0 0 1 1 1 1 KOW motif MS_channel PF00924.18 gi|305662602|ref|YP_003858890.1| - 0.19 11.3 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel Ribosomal_S4e PF00900.20 gi|305662603|ref|YP_003858891.1| - 7.2e-22 77.1 0.1 1.3e-21 76.3 0.1 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|305662603|ref|YP_003858891.1| - 1.8e-17 63.2 3.8 2.9e-17 62.5 3.8 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|305662603|ref|YP_003858891.1| - 7.8e-10 38.3 0.2 2.8e-09 36.5 0.0 2.1 2 0 0 2 2 2 1 S4 domain 40S_S4_C PF16121.5 gi|305662603|ref|YP_003858891.1| - 0.0056 16.3 0.0 0.0099 15.5 0.0 1.4 1 0 0 1 1 1 1 40S ribosomal protein S4 C-terminus KOW PF00467.29 gi|305662603|ref|YP_003858891.1| - 0.075 13.0 0.3 0.075 13.0 0.3 2.0 2 0 0 2 2 2 0 KOW motif Ribosomal_L5_C PF00673.21 gi|305662604|ref|YP_003858892.1| - 3.2e-22 78.5 0.0 7.6e-22 77.3 0.0 1.7 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|305662604|ref|YP_003858892.1| - 6e-20 71.3 0.1 1.2e-19 70.3 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|305662605|ref|YP_003858893.1| - 1.3e-11 44.1 4.1 1.5e-11 43.9 4.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Prim_Zn_Ribbon PF08273.12 gi|305662605|ref|YP_003858893.1| - 0.015 15.5 4.5 0.13 12.5 1.0 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-FPG_IleRS PF06827.14 gi|305662605|ref|YP_003858893.1| - 0.018 14.9 3.2 0.033 14.0 3.2 1.5 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS DZR PF12773.7 gi|305662605|ref|YP_003858893.1| - 0.032 14.2 0.3 0.041 13.9 0.3 1.1 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|305662605|ref|YP_003858893.1| - 0.064 13.2 2.7 0.08 12.9 2.7 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-AD PF07776.15 gi|305662605|ref|YP_003858893.1| - 0.11 12.8 2.2 0.78 10.0 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) zf-CCHC_2 PF13696.6 gi|305662605|ref|YP_003858893.1| - 0.96 9.3 5.5 2.9 7.8 0.6 2.2 2 0 0 2 2 2 0 Zinc knuckle Ribosomal_S8 PF00410.19 gi|305662606|ref|YP_003858894.1| - 3.8e-27 94.7 0.0 6.8e-27 93.9 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|305662607|ref|YP_003858895.1| - 1.3e-28 99.5 4.9 3e-16 59.9 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L32e PF01655.18 gi|305662608|ref|YP_003858896.1| - 4.8e-33 113.8 0.0 6.9e-33 113.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|305662609|ref|YP_003858897.1| - 2.6e-55 186.4 8.3 2.9e-55 186.3 8.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.7 gi|305662609|ref|YP_003858897.1| - 0.19 11.9 4.8 5 7.4 0.1 3.8 3 1 1 4 4 4 0 Helix-turn-helix domain Ribosomal_L5e PF17144.4 gi|305662610|ref|YP_003858898.1| - 1.7e-28 99.7 2.5 7.1e-19 68.4 1.5 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|305662610|ref|YP_003858898.1| - 1.8e-07 32.0 1.4 2.7e-07 31.4 0.1 1.8 2 0 0 2 2 2 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|305662610|ref|YP_003858898.1| - 0.0071 16.7 0.0 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Rtt106_N PF18215.1 gi|305662610|ref|YP_003858898.1| - 0.11 12.3 0.0 17 5.2 0.0 2.3 2 0 0 2 2 2 0 Histone chaperone Rtt106 N-terminal domain Ribosomal_S5 PF00333.20 gi|305662611|ref|YP_003858899.1| - 1.1e-25 89.4 0.7 4.3e-25 87.5 0.6 2.0 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|305662611|ref|YP_003858899.1| - 3.4e-21 74.5 0.0 6.6e-21 73.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|305662612|ref|YP_003858900.1| - 6.1e-13 48.4 0.0 1.3e-12 47.4 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|305662613|ref|YP_003858901.1| - 7.2e-20 72.0 0.1 9.7e-20 71.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|305662613|ref|YP_003858901.1| - 0.059 12.8 0.0 0.098 12.0 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein 60S L18 and 50S L18e SecY PF00344.20 gi|305662614|ref|YP_003858902.1| - 4.7e-58 196.9 26.7 4.7e-58 196.9 26.7 1.5 1 1 1 2 2 2 1 SecY translocase Plug_translocon PF10559.9 gi|305662614|ref|YP_003858902.1| - 0.031 14.1 0.3 0.092 12.6 0.3 1.9 1 0 0 1 1 1 0 Plug domain of Sec61p YuiB PF14068.6 gi|305662615|ref|YP_003858903.1| - 0.014 16.0 2.1 0.014 16.0 2.1 1.6 2 0 0 2 2 2 0 Putative membrane protein Ribosomal_L34e PF01199.18 gi|305662616|ref|YP_003858904.1| - 5.4e-24 84.3 2.0 5.8e-24 84.2 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e zf-TFIIB PF13453.6 gi|305662616|ref|YP_003858904.1| - 0.0023 17.2 0.4 0.24 10.7 0.1 2.4 2 0 0 2 2 2 2 Transcription factor zinc-finger Mut7-C PF01927.16 gi|305662616|ref|YP_003858904.1| - 0.059 13.5 0.1 0.084 13.0 0.1 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain Zn_ribbon_SprT PF17283.2 gi|305662616|ref|YP_003858904.1| - 0.3 11.0 3.0 1.5 8.8 1.1 2.4 2 1 0 2 2 2 0 SprT-like zinc ribbon domain Cytidylate_kin2 PF13189.6 gi|305662617|ref|YP_003858905.1| - 6.9e-22 78.4 0.2 2.8e-19 70.0 0.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|305662617|ref|YP_003858905.1| - 5.3e-18 65.8 0.0 8.6e-18 65.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|305662617|ref|YP_003858905.1| - 2.5e-16 60.3 0.2 7.1e-16 58.9 0.2 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|305662617|ref|YP_003858905.1| - 4.8e-11 42.8 0.4 3.5e-07 30.2 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|305662617|ref|YP_003858905.1| - 1.4e-06 28.5 0.0 4.4e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|305662617|ref|YP_003858905.1| - 1.6e-06 28.3 0.1 3.2e-06 27.3 0.0 1.6 2 0 0 2 2 2 1 Adenylate kinase SKI PF01202.22 gi|305662617|ref|YP_003858905.1| - 3.9e-05 23.8 0.3 0.0003 20.9 0.3 2.2 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.29 gi|305662617|ref|YP_003858905.1| - 0.00011 22.6 0.0 0.00016 22.1 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|305662617|ref|YP_003858905.1| - 0.0014 18.4 0.3 0.0093 15.7 0.0 2.2 1 1 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|305662617|ref|YP_003858905.1| - 0.0014 19.0 0.1 0.0026 18.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|305662617|ref|YP_003858905.1| - 0.0015 17.9 0.0 0.0028 17.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|305662617|ref|YP_003858905.1| - 0.0027 18.0 0.0 0.0043 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|305662617|ref|YP_003858905.1| - 0.0033 17.3 0.1 0.0078 16.1 0.0 1.6 2 0 0 2 2 2 1 NTPase AAA_5 PF07728.14 gi|305662617|ref|YP_003858905.1| - 0.0052 16.8 0.0 0.009 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.17 gi|305662617|ref|YP_003858905.1| - 0.0071 16.0 0.2 0.076 12.7 0.0 2.1 2 0 0 2 2 2 1 Thymidylate kinase CoaE PF01121.20 gi|305662617|ref|YP_003858905.1| - 0.0076 15.9 0.4 2.8 7.6 0.0 2.2 2 0 0 2 2 2 2 Dephospho-CoA kinase Rad17 PF03215.15 gi|305662617|ref|YP_003858905.1| - 0.0077 16.2 0.0 0.018 15.0 0.0 1.6 2 0 0 2 2 2 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|305662617|ref|YP_003858905.1| - 0.0082 15.9 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain ABC_tran PF00005.27 gi|305662617|ref|YP_003858905.1| - 0.012 16.1 0.2 0.017 15.7 0.2 1.5 1 1 0 1 1 1 0 ABC transporter NB-ARC PF00931.22 gi|305662617|ref|YP_003858905.1| - 0.022 13.9 0.0 0.04 13.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.6 gi|305662617|ref|YP_003858905.1| - 0.036 13.8 0.0 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|305662617|ref|YP_003858905.1| - 0.036 13.9 0.2 0.073 12.9 0.1 1.5 2 0 0 2 2 1 0 Deoxynucleoside kinase AAA_28 PF13521.6 gi|305662617|ref|YP_003858905.1| - 0.036 14.3 0.1 0.08 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|305662617|ref|YP_003858905.1| - 0.05 13.3 0.1 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|305662617|ref|YP_003858905.1| - 0.053 12.6 0.1 0.1 11.6 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|305662617|ref|YP_003858905.1| - 0.063 13.6 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|305662617|ref|YP_003858905.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain APS_kinase PF01583.20 gi|305662617|ref|YP_003858905.1| - 0.082 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase cobW PF02492.19 gi|305662617|ref|YP_003858905.1| - 0.091 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|305662617|ref|YP_003858905.1| - 0.11 13.0 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Ribosomal_L14e PF01929.17 gi|305662618|ref|YP_003858906.1| - 0.0046 17.4 0.0 0.0077 16.7 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L14 XisI PF08869.11 gi|305662618|ref|YP_003858906.1| - 0.012 15.9 0.1 0.015 15.7 0.1 1.1 1 0 0 1 1 1 0 XisI protein KOW PF00467.29 gi|305662618|ref|YP_003858906.1| - 0.012 15.5 0.1 0.025 14.6 0.1 1.5 1 0 0 1 1 1 0 KOW motif DKCLD PF08068.12 gi|305662619|ref|YP_003858907.1| - 7.8e-17 61.1 0.3 1.1e-16 60.7 0.3 1.2 1 0 0 1 1 1 1 DKCLD (NUC011) domain TruB_N PF01509.18 gi|305662619|ref|YP_003858907.1| - 0.22 11.9 0.0 0.34 11.3 0.0 1.3 1 0 0 1 1 1 0 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|305662620|ref|YP_003858908.1| - 1.1e-22 79.9 0.1 1.8e-22 79.2 0.1 1.3 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|305662620|ref|YP_003858908.1| - 3.3e-22 78.2 4.1 3.6e-22 78.1 2.0 2.0 2 0 0 2 2 2 1 PUA domain TruB_N PF01509.18 gi|305662620|ref|YP_003858908.1| - 7.6e-19 68.6 1.2 1.1e-07 32.4 0.0 3.5 2 1 1 3 3 3 2 TruB family pseudouridylate synthase (N terminal domain) UPF0113 PF03657.13 gi|305662620|ref|YP_003858908.1| - 0.047 13.9 0.1 0.13 12.6 0.1 1.7 1 0 0 1 1 1 0 UPF0113 PUA domain MTS PF05175.14 gi|305662621|ref|YP_003858909.1| - 9.7e-46 155.4 0.0 1.1e-45 155.2 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|305662621|ref|YP_003858909.1| - 4.1e-12 46.1 0.0 5.4e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|305662621|ref|YP_003858909.1| - 9.6e-11 41.6 0.0 1.3e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|305662621|ref|YP_003858909.1| - 1.7e-08 35.1 0.0 2.4e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|305662621|ref|YP_003858909.1| - 1.2e-07 31.6 0.0 1.5e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.9 gi|305662621|ref|YP_003858909.1| - 1.3e-06 28.2 0.0 1.9e-06 27.8 0.0 1.4 1 1 0 1 1 1 1 Lysine methyltransferase Met_10 PF02475.16 gi|305662621|ref|YP_003858909.1| - 2.2e-06 27.6 0.0 2.6e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|305662621|ref|YP_003858909.1| - 7.3e-06 25.9 0.0 8.9e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|305662621|ref|YP_003858909.1| - 1.1e-05 26.0 0.0 1.9e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|305662621|ref|YP_003858909.1| - 3.3e-05 23.9 0.0 6.3e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|305662621|ref|YP_003858909.1| - 7.9e-05 23.2 0.0 0.00012 22.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|305662621|ref|YP_003858909.1| - 9.9e-05 21.7 0.0 0.00013 21.3 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase PCMT PF01135.19 gi|305662621|ref|YP_003858909.1| - 0.0003 20.6 0.1 0.00051 19.9 0.1 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|305662621|ref|YP_003858909.1| - 0.00068 19.2 0.1 0.0014 18.2 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase GidB PF02527.15 gi|305662621|ref|YP_003858909.1| - 0.0033 16.8 0.0 0.005 16.2 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G TehB PF03848.14 gi|305662621|ref|YP_003858909.1| - 0.0041 16.6 0.0 0.0055 16.1 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_15 PF09445.10 gi|305662621|ref|YP_003858909.1| - 0.021 14.4 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_2 PF00891.18 gi|305662621|ref|YP_003858909.1| - 0.038 13.3 0.0 0.067 12.5 0.0 1.5 1 1 0 1 1 1 0 O-methyltransferase domain Dam PF05869.11 gi|305662621|ref|YP_003858909.1| - 0.043 13.4 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 DNA N-6-adenine-methyltransferase (Dam) UPF0020 PF01170.18 gi|305662621|ref|YP_003858909.1| - 0.044 13.5 0.2 0.22 11.2 0.2 2.0 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 CMAS PF02353.20 gi|305662621|ref|YP_003858909.1| - 0.046 13.0 0.0 0.054 12.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase N6_N4_Mtase PF01555.18 gi|305662621|ref|YP_003858909.1| - 0.047 13.4 0.0 3 7.5 0.0 2.3 2 1 0 2 2 2 0 DNA methylase tRNA_U5-meth_tr PF05958.11 gi|305662621|ref|YP_003858909.1| - 0.055 12.5 0.0 0.093 11.7 0.0 1.4 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_32 PF13679.6 gi|305662621|ref|YP_003858909.1| - 0.07 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Gtr1_RagA PF04670.12 gi|305662621|ref|YP_003858909.1| - 0.13 11.6 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region MetW PF07021.12 gi|305662621|ref|YP_003858909.1| - 0.15 11.7 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PIG-P PF08510.12 gi|305662623|ref|YP_003858911.1| - 0.0071 16.3 0.2 0.015 15.2 0.2 1.6 1 1 0 1 1 1 1 PIG-P Peptidase_M10 PF00413.24 gi|305662625|ref|YP_003858913.1| - 5.3e-07 29.6 0.1 6.4e-07 29.3 0.1 1.2 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.8 gi|305662625|ref|YP_003858913.1| - 0.00014 20.6 0.2 0.00017 20.4 0.2 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_4 PF13583.6 gi|305662625|ref|YP_003858913.1| - 0.0096 15.6 0.0 0.0096 15.6 0.0 1.0 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|305662625|ref|YP_003858913.1| - 0.011 14.7 0.3 0.013 14.4 0.3 1.1 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M54 PF07998.11 gi|305662625|ref|YP_003858913.1| - 0.064 13.2 0.1 0.095 12.7 0.1 1.2 1 0 0 1 1 1 0 Peptidase family M54 Astacin PF01400.24 gi|305662625|ref|YP_003858913.1| - 0.065 12.8 0.7 0.12 11.9 0.7 1.4 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Reprolysin_3 PF13582.6 gi|305662625|ref|YP_003858913.1| - 0.07 13.6 0.4 0.11 13.0 0.4 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M57 PF12388.8 gi|305662625|ref|YP_003858913.1| - 0.17 11.5 0.2 0.2 11.2 0.2 1.2 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Reprolysin_5 PF13688.6 gi|305662625|ref|YP_003858913.1| - 0.21 11.7 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 DUF4953 PF16313.5 gi|305662625|ref|YP_003858913.1| - 0.42 9.8 3.4 0.35 10.0 2.6 1.3 1 1 0 1 1 1 0 Met-zincin AAA_assoc_C PF09821.9 gi|305662627|ref|YP_003858915.1| - 8.3e-29 100.5 0.7 1e-28 100.3 0.7 1.1 1 0 0 1 1 1 1 C-terminal AAA-associated domain E3_UFM1_ligase PF09743.9 gi|305662627|ref|YP_003858915.1| - 0.015 15.0 1.0 0.07 12.7 0.1 2.0 1 1 0 2 2 2 0 E3 UFM1-protein ligase 1 BPD_transp_1 PF00528.22 gi|305662628|ref|YP_003858916.1| - 1e-13 51.4 20.7 1.6e-13 50.8 20.7 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|305662629|ref|YP_003858917.1| - 1.8e-08 34.3 21.8 4.9e-08 32.9 9.0 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component Tmpp129 PF10272.9 gi|305662629|ref|YP_003858917.1| - 1.8 7.7 3.7 2.5 7.3 3.7 1.1 1 0 0 1 1 1 0 Putative transmembrane protein precursor DUF2070 PF09843.9 gi|305662629|ref|YP_003858917.1| - 6 5.0 15.6 7.4 4.7 15.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) MS_channel PF00924.18 gi|305662630|ref|YP_003858918.1| - 7.5e-19 68.1 9.2 7.5e-19 68.1 9.2 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF2162 PF09930.9 gi|305662630|ref|YP_003858918.1| - 0.019 14.4 8.3 0.035 13.5 8.4 1.3 1 1 0 1 1 1 0 Predicted transporter (DUF2162) Tmpp129 PF10272.9 gi|305662630|ref|YP_003858918.1| - 0.025 13.9 1.1 0.036 13.4 1.1 1.1 1 0 0 1 1 1 0 Putative transmembrane protein precursor RinB PF06116.12 gi|305662630|ref|YP_003858918.1| - 0.046 13.8 0.9 0.094 12.8 0.9 1.5 1 0 0 1 1 1 0 Transcriptional activator RinB FtsK_4TM PF13491.6 gi|305662630|ref|YP_003858918.1| - 3 7.5 14.8 0.4 10.4 10.0 1.7 2 0 0 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE Ribosomal_S13 PF00416.22 gi|305662631|ref|YP_003858919.1| - 4e-40 137.2 0.0 4.8e-40 136.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.25 gi|305662632|ref|YP_003858920.1| - 1.5e-14 53.4 0.1 3.2e-14 52.4 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|305662632|ref|YP_003858920.1| - 7.4e-06 26.8 1.5 3e-05 24.8 0.9 2.2 2 1 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.19 gi|305662633|ref|YP_003858921.1| - 7.1e-49 164.8 2.1 8.6e-49 164.5 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|305662633|ref|YP_003858921.1| - 0.087 12.5 0.2 0.11 12.2 0.2 1.1 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) RNA_pol_A_bac PF01000.26 gi|305662634|ref|YP_003858922.1| - 1.9e-23 82.9 0.3 9.6e-23 80.7 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|305662634|ref|YP_003858922.1| - 1.8e-13 49.7 0.0 2.3e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.27 gi|305662634|ref|YP_003858922.1| - 4.5e-10 38.9 11.7 4.3e-06 26.3 1.8 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|305662634|ref|YP_003858922.1| - 1.1e-09 38.7 8.3 0.0003 21.3 0.2 3.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|305662634|ref|YP_003858922.1| - 1.9e-08 34.3 22.3 1.4e-06 28.3 12.6 3.2 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|305662634|ref|YP_003858922.1| - 2.2e-07 31.7 12.2 0.00088 20.2 0.4 2.9 4 0 0 4 4 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|305662634|ref|YP_003858922.1| - 3.9e-07 30.1 12.0 3.9e-07 30.1 12.0 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|305662634|ref|YP_003858922.1| - 1.1e-05 25.3 12.6 6.7e-05 22.8 2.0 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|305662634|ref|YP_003858922.1| - 8.2e-05 22.7 23.3 0.00046 20.3 13.2 2.8 3 1 2 5 5 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|305662634|ref|YP_003858922.1| - 0.00014 22.2 13.2 0.041 14.3 0.2 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|305662634|ref|YP_003858922.1| - 0.00091 19.7 13.8 0.047 14.3 0.2 3.2 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|305662634|ref|YP_003858922.1| - 0.0015 18.7 9.7 0.028 14.6 9.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|305662634|ref|YP_003858922.1| - 0.0017 18.3 18.7 0.0068 16.4 1.6 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|305662634|ref|YP_003858922.1| - 0.0077 17.1 23.3 0.02 15.8 4.2 3.0 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|305662634|ref|YP_003858922.1| - 0.0085 16.8 4.8 1.7 9.4 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|305662634|ref|YP_003858922.1| - 0.01 16.3 3.4 0.01 16.3 3.4 3.2 3 1 1 4 4 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|305662634|ref|YP_003858922.1| - 0.58 11.0 8.7 2.5 9.0 0.3 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain NS3_envE PF02723.14 gi|305662634|ref|YP_003858922.1| - 1.1 9.4 5.4 0.32 11.1 1.5 2.1 1 1 1 2 2 2 0 Non-structural protein NS3/Small envelope protein E Fer4_13 PF13370.6 gi|305662634|ref|YP_003858922.1| - 1.9 9.1 12.2 1.1e+02 3.4 12.2 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Ribosomal_L27A PF00828.19 gi|305662635|ref|YP_003858923.1| - 8.5e-08 32.9 0.1 1.5e-07 32.1 0.1 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|305662635|ref|YP_003858923.1| - 8.6e-08 31.8 0.1 9.5e-08 31.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L13 PF00572.18 gi|305662636|ref|YP_003858924.1| - 2.3e-07 31.1 0.7 4.8e-05 23.6 0.7 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|305662637|ref|YP_003858925.1| - 4.2e-27 95.1 0.0 5.1e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Calici_coat PF00915.20 gi|305662637|ref|YP_003858925.1| - 0.2 10.5 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 Calicivirus coat protein RNA_pol_N PF01194.17 gi|305662638|ref|YP_003858926.1| - 8.4e-30 102.9 0.5 9.4e-30 102.7 0.5 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|305662638|ref|YP_003858926.1| - 0.027 14.7 0.1 0.04 14.2 0.1 1.2 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S2 PF00318.20 gi|305662639|ref|YP_003858927.1| - 2e-27 95.9 0.0 1e-12 47.7 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Phage_mat-A PF03863.13 gi|305662640|ref|YP_003858928.1| - 0.051 12.5 0.0 0.1 11.5 0.0 1.5 2 0 0 2 2 2 0 Phage maturation protein AA_kinase PF00696.28 gi|305662641|ref|YP_003858929.1| - 1.7e-39 135.8 0.0 2e-39 135.7 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|305662642|ref|YP_003858930.1| - 1.6e-21 76.8 0.9 1.5e-16 60.4 2.7 2.2 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|305662642|ref|YP_003858930.1| - 0.00055 19.0 1.0 0.00055 19.0 1.0 3.3 3 1 1 4 4 4 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|305662642|ref|YP_003858930.1| - 0.00071 18.8 5.3 0.0041 16.3 5.3 2.1 1 1 0 1 1 1 1 Conserved region in glutamate synthase NMO PF03060.15 gi|305662642|ref|YP_003858930.1| - 0.0031 16.9 0.5 0.0075 15.7 0.1 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase polyprenyl_synt PF00348.17 gi|305662643|ref|YP_003858931.1| - 3.5e-69 232.7 0.0 5.7e-69 232.0 0.0 1.3 1 0 0 1 1 1 1 Polyprenyl synthetase Ubiq_cyt_C_chap PF03981.12 gi|305662643|ref|YP_003858931.1| - 0.099 12.7 0.0 16 5.5 0.0 2.5 2 1 0 2 2 2 0 Ubiquinol-cytochrome C chaperone Gp-FAR-1 PF05823.12 gi|305662643|ref|YP_003858931.1| - 0.18 12.1 0.6 2.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF2118 PF09891.9 gi|305662644|ref|YP_003858932.1| - 3.2e-12 46.6 1.0 3.7e-12 46.4 1.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) Endonuclea_NS_2 PF13930.6 gi|305662644|ref|YP_003858932.1| - 0.2 11.8 0.4 2.1 8.4 0.1 2.1 2 0 0 2 2 2 0 DNA/RNA non-specific endonuclease tRNA-synt_1c PF00749.21 gi|305662645|ref|YP_003858933.1| - 1.9e-70 237.3 0.0 2.5e-70 236.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|305662645|ref|YP_003858933.1| - 5.6e-21 75.2 0.0 1.3e-20 74.0 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Kdo_hydroxy PF11004.8 gi|305662645|ref|YP_003858933.1| - 0.011 15.1 0.1 0.02 14.2 0.1 1.3 1 0 0 1 1 1 0 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase Ribosomal_L7Ae PF01248.26 gi|305662646|ref|YP_003858934.1| - 2.7e-28 97.6 0.6 3.3e-28 97.3 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family FAM25 PF15825.5 gi|305662646|ref|YP_003858934.1| - 0.0023 18.2 0.2 0.0046 17.3 0.2 1.5 1 0 0 1 1 1 1 FAM25 family RNase_P_pop3 PF08228.11 gi|305662646|ref|YP_003858934.1| - 0.013 15.6 0.0 0.014 15.4 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 PELOTA_1 PF15608.6 gi|305662646|ref|YP_003858934.1| - 0.068 13.1 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 PELOTA RNA binding domain Ribosomal_S28e PF01200.18 gi|305662647|ref|YP_003858935.1| - 1.3e-30 105.1 5.3 1.7e-30 104.8 5.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|305662648|ref|YP_003858936.1| - 2e-22 79.2 0.4 2.3e-22 79.0 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|305662648|ref|YP_003858936.1| - 5.7e-07 29.4 2.7 7.1e-07 29.1 2.7 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|305662648|ref|YP_003858936.1| - 0.004 17.1 0.5 1.4 9.0 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) VATC PF18716.1 gi|305662648|ref|YP_003858936.1| - 0.014 15.2 3.8 0.21 11.5 3.8 2.1 1 1 0 1 1 1 0 Vms1-associating treble clef domain NosL PF05573.12 gi|305662648|ref|YP_003858936.1| - 0.02 15.2 0.0 0.022 15.1 0.0 1.1 1 0 0 1 1 1 0 NosL zf-FLZ PF04570.14 gi|305662648|ref|YP_003858936.1| - 0.052 13.0 0.4 0.088 12.3 0.4 1.3 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 zf-HIT PF04438.16 gi|305662648|ref|YP_003858936.1| - 0.13 12.2 5.3 6.1 6.8 5.3 2.1 1 1 0 1 1 1 0 HIT zinc finger DUF2175 PF09943.9 gi|305662648|ref|YP_003858936.1| - 0.14 12.5 0.1 0.15 12.4 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) GTP_EFTU_D4 PF14578.6 gi|305662649|ref|YP_003858937.1| - 1.2e-37 127.7 1.6 3.6e-37 126.1 1.6 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|305662649|ref|YP_003858937.1| - 1.5e-34 119.3 0.0 2.8e-34 118.4 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|305662649|ref|YP_003858937.1| - 1.3e-20 73.4 3.8 1.4e-20 73.4 1.5 2.2 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|305662649|ref|YP_003858937.1| - 1.2e-12 48.0 4.1 1.2e-08 35.2 0.1 2.7 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|305662649|ref|YP_003858937.1| - 3.9e-07 30.2 0.5 1.2e-06 28.6 0.1 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase Ras PF00071.22 gi|305662649|ref|YP_003858937.1| - 0.0013 18.3 0.0 0.0055 16.3 0.0 2.0 1 1 0 1 1 1 1 Ras family Roc PF08477.13 gi|305662649|ref|YP_003858937.1| - 0.0016 18.7 0.0 0.003 17.7 0.0 1.5 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|305662649|ref|YP_003858937.1| - 0.0081 16.1 1.0 0.75 9.7 0.1 3.4 2 1 1 3 3 3 1 RsgA GTPase Dynamin_N PF00350.23 gi|305662649|ref|YP_003858937.1| - 0.023 14.7 0.1 0.18 11.9 0.0 2.2 2 0 0 2 2 2 0 Dynamin family PduV-EutP PF10662.9 gi|305662649|ref|YP_003858937.1| - 0.093 12.5 0.2 1.5 8.5 0.0 3.0 5 0 0 5 5 5 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 gi|305662649|ref|YP_003858937.1| - 0.12 12.2 0.0 0.57 9.9 0.0 2.0 1 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Ribosomal_S6e PF01092.19 gi|305662650|ref|YP_003858938.1| - 4.6e-32 110.6 0.2 2.9e-30 104.8 0.1 2.3 2 0 0 2 2 2 2 Ribosomal protein S6e SSPI PF14098.6 gi|305662650|ref|YP_003858938.1| - 0.0077 16.4 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 Small, acid-soluble spore protein I GTP_EFTU PF00009.27 gi|305662651|ref|YP_003858939.1| - 1.1e-26 93.6 0.4 2.9e-26 92.2 0.4 1.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|305662651|ref|YP_003858939.1| - 1e-23 83.4 0.2 2.3e-23 82.2 0.2 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal MMR_HSR1 PF01926.23 gi|305662651|ref|YP_003858939.1| - 4.5e-06 26.7 0.0 1e-05 25.6 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|305662651|ref|YP_003858939.1| - 0.0026 17.8 0.2 0.0057 16.7 0.2 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|305662651|ref|YP_003858939.1| - 0.0037 17.0 1.5 0.27 11.0 0.1 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|305662651|ref|YP_003858939.1| - 0.0038 17.1 1.1 0.1 12.5 0.3 2.2 2 0 0 2 2 2 1 RsgA GTPase GTP_EFTU_D2 PF03144.25 gi|305662651|ref|YP_003858939.1| - 0.007 16.7 3.7 0.017 15.5 3.7 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MeaB PF03308.16 gi|305662651|ref|YP_003858939.1| - 0.078 12.0 0.2 2.3 7.1 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB FeoB_N PF02421.18 gi|305662651|ref|YP_003858939.1| - 0.13 11.8 2.4 3.5 7.1 0.0 2.6 3 0 0 3 3 3 0 Ferrous iron transport protein B PIN_9 PF18477.1 gi|305662652|ref|YP_003858940.1| - 1.7e-10 41.2 0.4 2.1e-10 41.0 0.4 1.1 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|305662652|ref|YP_003858940.1| - 3.1e-05 24.3 2.3 0.0014 18.9 2.3 2.0 1 1 0 1 1 1 1 PIN domain CdhD PF03599.16 gi|305662652|ref|YP_003858940.1| - 0.0028 16.4 0.3 0.0038 16.0 0.2 1.3 1 1 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Fcf1 PF04900.12 gi|305662652|ref|YP_003858940.1| - 0.036 14.5 0.0 0.048 14.1 0.0 1.2 1 0 0 1 1 1 0 Fcf1 S1 PF00575.23 gi|305662653|ref|YP_003858941.1| - 1.2e-12 48.0 1.1 2.6e-12 46.9 1.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.17 gi|305662653|ref|YP_003858941.1| - 1.4e-12 47.8 0.0 2.8e-12 46.8 0.0 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 RNA_pol_Rbc25 PF08292.12 gi|305662653|ref|YP_003858941.1| - 0.034 14.4 0.0 0.053 13.8 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 Alba PF01918.21 gi|305662655|ref|YP_003858943.1| - 3.1e-22 78.1 0.9 3.1e-22 78.1 0.9 1.4 2 0 0 2 2 2 1 Alba Topoisom_bac PF01131.20 gi|305662656|ref|YP_003858944.1| - 9.2e-82 275.2 0.0 2.1e-81 274.0 0.0 1.6 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|305662656|ref|YP_003858944.1| - 4.4e-25 87.9 0.1 2.6e-24 85.4 0.1 2.5 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|305662656|ref|YP_003858944.1| - 1.9e-13 50.6 1.0 2.8e-12 46.8 0.0 3.4 4 1 0 4 4 4 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|305662656|ref|YP_003858944.1| - 1.7e-05 25.1 5.9 0.088 13.2 0.6 4.6 3 1 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|305662656|ref|YP_003858944.1| - 0.0014 18.7 0.1 0.0043 17.1 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 gi|305662656|ref|YP_003858944.1| - 0.0026 17.6 0.0 0.0066 16.3 0.0 1.7 1 0 0 1 1 1 1 Helicase TackOD1 PF18551.1 gi|305662656|ref|YP_003858944.1| - 0.0044 16.7 3.4 0.024 14.3 0.2 2.6 2 0 0 2 2 2 1 Thaumarchaeal output domain 1 Toprim_4 PF13662.6 gi|305662656|ref|YP_003858944.1| - 0.017 15.6 0.0 0.085 13.3 0.0 2.3 1 0 0 1 1 1 0 Toprim domain Met_10 PF02475.16 gi|305662656|ref|YP_003858944.1| - 0.023 14.5 0.1 8.2 6.1 0.0 2.7 2 0 0 2 2 2 0 Met-10+ like-protein RE_MamI PF09567.10 gi|305662656|ref|YP_003858944.1| - 0.058 13.0 0.2 0.21 11.2 0.2 1.9 1 0 0 1 1 1 0 MamI restriction endonuclease HypA PF01155.19 gi|305662656|ref|YP_003858944.1| - 0.14 12.2 2.2 0.9 9.6 0.1 2.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF572 PF04502.13 gi|305662656|ref|YP_003858944.1| - 0.23 11.1 0.2 0.38 10.3 0.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF572) zf-ribbon_3 PF13248.6 gi|305662656|ref|YP_003858944.1| - 0.3 10.5 10.6 1.9 8.0 2.6 3.1 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|305662656|ref|YP_003858944.1| - 0.34 11.0 4.4 6.8 6.8 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon Ima1_N PF09779.9 gi|305662656|ref|YP_003858944.1| - 0.51 11.2 1.5 1.3 9.9 1.5 1.6 1 0 0 1 1 1 0 Ima1 N-terminal domain Alba PF01918.21 gi|305662657|ref|YP_003858945.1| - 1.9e-08 34.0 0.0 2.4e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Alba Pribosyltran PF00156.27 gi|305662658|ref|YP_003858946.1| - 2.3e-26 92.2 0.1 3.1e-26 91.8 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|305662658|ref|YP_003858946.1| - 8.1e-05 22.2 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 gi|305662658|ref|YP_003858946.1| - 0.044 13.8 0.2 0.065 13.3 0.2 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Lip_prot_lig_C PF10437.9 gi|305662658|ref|YP_003858946.1| - 0.06 13.4 0.9 1.7 8.7 0.2 2.6 2 1 1 3 3 3 0 Bacterial lipoate protein ligase C-terminus Ribosomal_L22 PF00237.19 gi|305662658|ref|YP_003858946.1| - 0.12 12.6 0.0 0.29 11.4 0.0 1.7 2 0 0 2 2 2 0 Ribosomal protein L22p/L17e AveC_like PF17198.4 gi|305662660|ref|YP_003858948.1| - 1.1 8.6 10.6 0.093 12.1 4.3 2.3 2 1 0 2 2 2 0 Spirocyclase AveC-like SK_channel PF03530.14 gi|305662660|ref|YP_003858948.1| - 5.8 6.9 15.4 0.94 9.5 5.1 2.6 1 1 1 2 2 2 0 Calcium-activated SK potassium channel AAA_21 PF13304.6 gi|305662661|ref|YP_003858949.1| - 1.6e-16 61.0 0.8 5.6e-09 36.2 0.0 2.7 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|305662661|ref|YP_003858949.1| - 4.8e-15 56.3 0.0 7.1e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|305662661|ref|YP_003858949.1| - 1.9e-09 37.3 0.8 2.3e-07 30.5 0.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|305662661|ref|YP_003858949.1| - 0.00097 19.7 1.1 0.0021 18.6 0.3 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|305662661|ref|YP_003858949.1| - 0.0013 18.4 0.1 0.0025 17.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|305662661|ref|YP_003858949.1| - 0.0049 17.2 0.1 0.031 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|305662661|ref|YP_003858949.1| - 0.0051 17.2 0.1 0.0091 16.4 0.0 1.7 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|305662661|ref|YP_003858949.1| - 0.013 15.2 5.5 0.15 11.7 3.2 2.1 1 1 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|305662661|ref|YP_003858949.1| - 0.017 15.1 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|305662661|ref|YP_003858949.1| - 0.019 14.7 0.2 0.053 13.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|305662661|ref|YP_003858949.1| - 0.022 14.7 0.4 0.044 13.7 0.4 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|305662661|ref|YP_003858949.1| - 0.025 14.3 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|305662661|ref|YP_003858949.1| - 0.026 14.4 0.1 0.048 13.6 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|305662661|ref|YP_003858949.1| - 0.028 13.8 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|305662661|ref|YP_003858949.1| - 0.036 14.3 0.0 0.077 13.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|305662661|ref|YP_003858949.1| - 0.042 13.4 0.1 0.075 12.6 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|305662661|ref|YP_003858949.1| - 0.055 12.1 1.2 0.4 9.3 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|305662661|ref|YP_003858949.1| - 0.08 12.7 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF563 PF04577.14 gi|305662661|ref|YP_003858949.1| - 0.081 13.0 0.1 5.3 7.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF563) DLIC PF05783.11 gi|305662661|ref|YP_003858949.1| - 0.098 11.5 0.0 0.098 11.5 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) G-alpha PF00503.20 gi|305662661|ref|YP_003858949.1| - 0.1 11.8 0.1 0.13 11.4 0.1 1.3 1 1 0 1 1 1 0 G-protein alpha subunit DUF815 PF05673.13 gi|305662661|ref|YP_003858949.1| - 0.1 11.7 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.18 gi|305662661|ref|YP_003858949.1| - 0.12 11.7 0.1 0.2 11.0 0.1 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_18 PF13238.6 gi|305662661|ref|YP_003858949.1| - 0.13 12.8 0.0 0.37 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|305662661|ref|YP_003858949.1| - 0.13 11.3 0.2 0.28 10.2 0.2 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|305662661|ref|YP_003858949.1| - 0.14 12.2 0.1 1.2 9.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|305662661|ref|YP_003858949.1| - 0.15 12.1 0.2 0.33 11.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|305662661|ref|YP_003858949.1| - 0.19 11.3 0.1 1.6 8.3 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|305662661|ref|YP_003858949.1| - 0.2 12.0 0.0 0.43 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Amidohydro_1 PF01979.20 gi|305662662|ref|YP_003858950.1| - 6.5e-12 45.4 0.1 1.8e-10 40.6 0.1 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|305662662|ref|YP_003858950.1| - 0.082 12.4 0.0 8.8 5.7 0.0 2.1 2 0 0 2 2 2 0 Amidohydrolase family Hyphal_reg_CWP PF11765.8 gi|305662662|ref|YP_003858950.1| - 0.084 11.8 0.1 0.31 9.9 0.0 1.8 2 0 0 2 2 2 0 Hyphally regulated cell wall protein N-terminal PUA PF01472.20 gi|305662663|ref|YP_003858951.1| - 3.1e-12 46.3 0.4 4.4e-12 45.8 0.4 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|305662663|ref|YP_003858951.1| - 0.0014 18.9 5.4 0.0014 18.9 5.4 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|305662663|ref|YP_003858951.1| - 0.0085 16.8 0.1 0.018 15.7 0.1 1.5 1 0 0 1 1 1 1 Pre-PUA-like domain P22_CoatProtein PF11651.8 gi|305662663|ref|YP_003858951.1| - 0.045 12.4 0.0 0.066 11.8 0.0 1.2 1 0 0 1 1 1 0 P22 coat protein - gene protein 5 THUMP PF02926.17 gi|305662664|ref|YP_003858952.1| - 2.6e-05 24.3 0.1 3.9e-05 23.8 0.1 1.4 1 1 0 1 1 1 1 THUMP domain Cellulase PF00150.18 gi|305662665|ref|YP_003858953.1| - 3.8e-55 187.3 1.4 4.7e-55 187.0 1.4 1.1 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Cation_efflux PF01545.21 gi|305662666|ref|YP_003858954.1| - 9e-19 68.0 29.1 1.1e-18 67.7 29.1 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|305662666|ref|YP_003858954.1| - 1.6e-07 31.3 0.3 3.1e-07 30.4 0.3 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter NikR_C PF08753.11 gi|305662667|ref|YP_003858955.1| - 8e-26 90.0 3.9 1.3e-25 89.3 3.9 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_3 PF12651.7 gi|305662667|ref|YP_003858955.1| - 0.042 13.8 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix domain DUF2569 PF10754.9 gi|305662668|ref|YP_003858956.1| - 0.0075 16.7 5.4 0.0093 16.4 5.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2569) DUF2500 PF10694.9 gi|305662668|ref|YP_003858956.1| - 0.017 15.6 0.3 0.017 15.6 0.3 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2500) Tetraspanin PF00335.20 gi|305662668|ref|YP_003858956.1| - 0.02 14.6 1.5 0.027 14.2 1.5 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF1761 PF08570.10 gi|305662668|ref|YP_003858956.1| - 0.026 14.8 5.4 0.038 14.3 5.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1761) ETRAMP PF09716.10 gi|305662668|ref|YP_003858956.1| - 0.038 14.0 4.7 1.3 9.2 0.7 2.3 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Gpi16 PF04113.14 gi|305662668|ref|YP_003858956.1| - 0.059 11.8 0.5 0.056 11.9 0.5 1.1 1 0 0 1 1 1 0 Gpi16 subunit, GPI transamidase component Baculo_11_kDa PF06143.11 gi|305662668|ref|YP_003858956.1| - 0.19 11.3 4.1 6.6 6.4 0.3 2.4 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF4064 PF13273.6 gi|305662668|ref|YP_003858956.1| - 0.21 11.9 12.2 1.5 9.1 6.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) DUF3552 PF12072.8 gi|305662668|ref|YP_003858956.1| - 0.3 10.5 0.2 0.3 10.5 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) DUF373 PF04123.13 gi|305662668|ref|YP_003858956.1| - 1.2 8.5 12.0 1.6 8.1 12.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF373) FtsX PF02687.21 gi|305662668|ref|YP_003858956.1| - 3.6 8.1 13.2 1.4 9.4 2.2 2.2 1 1 0 2 2 2 0 FtsX-like permease family CxxCxxCC PF03692.15 gi|305662669|ref|YP_003858957.1| - 1.6e-05 25.5 3.9 2.8e-05 24.7 3.9 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3638 PF12340.8 gi|305662670|ref|YP_003858958.1| - 0.032 13.5 0.5 0.042 13.2 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3638) UDG PF03167.19 gi|305662671|ref|YP_003858959.1| - 2.1e-42 144.8 0.0 2.6e-42 144.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF5622 PF18533.1 gi|305662672|ref|YP_003858960.1| - 4.7e-30 103.5 4.0 5.1e-30 103.4 4.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) RrnaAD PF00398.20 gi|305662673|ref|YP_003858961.1| - 1.7e-05 24.1 0.0 2.1e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.10 gi|305662673|ref|YP_003858961.1| - 7.9e-05 22.3 0.0 0.0001 21.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|305662673|ref|YP_003858961.1| - 9.1e-05 23.1 0.0 0.00014 22.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|305662673|ref|YP_003858961.1| - 0.00017 21.4 0.0 0.0003 20.6 0.0 1.3 1 0 0 1 1 1 1 DNA methylase Methyltransf_23 PF13489.6 gi|305662673|ref|YP_003858961.1| - 0.00051 19.9 0.0 0.00067 19.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|305662673|ref|YP_003858961.1| - 0.00084 19.9 0.0 0.0016 19.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|305662673|ref|YP_003858961.1| - 0.0031 17.3 0.6 0.0051 16.6 0.6 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|305662673|ref|YP_003858961.1| - 0.011 15.1 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|305662673|ref|YP_003858961.1| - 0.019 14.4 0.1 0.027 13.9 0.1 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB MetW PF07021.12 gi|305662673|ref|YP_003858961.1| - 0.022 14.3 0.2 0.033 13.8 0.2 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|305662673|ref|YP_003858961.1| - 0.028 13.8 0.0 0.03 13.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DOT1 PF08123.13 gi|305662673|ref|YP_003858961.1| - 0.048 13.2 0.0 0.083 12.4 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 MTS PF05175.14 gi|305662673|ref|YP_003858961.1| - 0.05 13.1 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|305662673|ref|YP_003858961.1| - 0.057 13.1 0.0 0.075 12.7 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PCMT PF01135.19 gi|305662673|ref|YP_003858961.1| - 0.062 13.1 0.0 0.089 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|305662673|ref|YP_003858961.1| - 0.11 11.9 0.1 0.22 11.0 0.0 1.5 1 1 0 1 1 1 0 Putative methyltransferase CTP-dep_RFKase PF01982.16 gi|305662674|ref|YP_003858962.1| - 7.7e-32 109.9 0.3 8.8e-32 109.8 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 FliMN_C PF01052.20 gi|305662674|ref|YP_003858962.1| - 0.084 12.9 0.1 0.19 11.8 0.1 1.6 1 0 0 1 1 1 0 Type III flagellar switch regulator (C-ring) FliN C-term Herpes_pp85 PF04637.12 gi|305662674|ref|YP_003858962.1| - 0.14 10.6 0.0 0.18 10.2 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) tRNA-synt_2 PF00152.20 gi|305662675|ref|YP_003858963.1| - 2.2e-71 240.5 0.2 2.7e-71 240.2 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|305662675|ref|YP_003858963.1| - 3.4e-14 52.6 0.7 8.3e-14 51.3 0.7 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|305662675|ref|YP_003858963.1| - 6.7e-05 22.5 0.4 0.0022 17.5 0.1 2.5 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) Band_7 PF01145.25 gi|305662676|ref|YP_003858964.1| - 7e-38 130.4 2.9 9.9e-38 129.9 2.9 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|305662676|ref|YP_003858964.1| - 0.012 15.3 0.2 0.023 14.4 0.2 1.6 1 1 0 1 1 1 0 SPFH domain-Band 7 family Apq12 PF12716.7 gi|305662676|ref|YP_003858964.1| - 0.12 12.4 2.3 0.24 11.4 2.3 1.5 1 0 0 1 1 1 0 Nuclear pore assembly and biogenesis NfeD PF01957.18 gi|305662677|ref|YP_003858965.1| - 1.9e-15 57.0 0.5 7.6e-15 55.1 0.5 2.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|305662677|ref|YP_003858965.1| - 1.3e-06 28.4 0.6 3e-06 27.3 0.6 1.6 1 0 0 1 1 1 1 Clp protease AAA_26 PF13500.6 gi|305662677|ref|YP_003858965.1| - 0.019 14.8 0.3 0.041 13.7 0.3 1.5 1 0 0 1 1 1 0 AAA domain Asparaginase_2 PF01112.18 gi|305662678|ref|YP_003858966.1| - 9.1e-79 264.6 0.0 1.1e-78 264.3 0.0 1.0 1 0 0 1 1 1 1 Asparaginase DUF2258 PF10015.9 gi|305662679|ref|YP_003858967.1| - 6.7e-32 109.5 0.8 1.5e-31 108.3 0.8 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) Aminotran_3 PF00202.21 gi|305662680|ref|YP_003858968.1| - 9.9e-111 370.3 0.0 1.2e-110 370.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III YHS PF04945.13 gi|305662682|ref|YP_003858970.1| - 0.012 15.7 0.4 0.027 14.6 0.4 1.6 1 1 0 1 1 1 0 YHS domain Abi_C PF14355.6 gi|305662683|ref|YP_003858971.1| - 0.15 12.1 0.2 0.38 10.9 0.2 1.7 1 1 0 1 1 1 0 Abortive infection C-terminus AAA_18 PF13238.6 gi|305662684|ref|YP_003858972.1| - 3.6e-17 63.1 0.0 5.1e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|305662684|ref|YP_003858972.1| - 3.7e-05 24.1 0.1 0.00014 22.3 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|305662684|ref|YP_003858972.1| - 0.00011 22.6 0.0 0.00024 21.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|305662684|ref|YP_003858972.1| - 0.0011 19.1 0.0 0.0069 16.5 0.0 2.0 2 1 0 2 2 2 1 Shikimate kinase AAA_28 PF13521.6 gi|305662684|ref|YP_003858972.1| - 0.0012 19.1 0.1 0.0021 18.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|305662684|ref|YP_003858972.1| - 0.0027 17.4 0.3 0.0074 16.0 0.0 1.8 2 1 1 3 3 3 1 Dephospho-CoA kinase Cytidylate_kin2 PF13189.6 gi|305662684|ref|YP_003858972.1| - 0.0038 17.4 0.0 0.006 16.7 0.0 1.4 1 0 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|305662684|ref|YP_003858972.1| - 0.0048 16.7 0.3 0.13 12.0 0.3 2.2 1 1 1 2 2 2 1 Cytidylate kinase KTI12 PF08433.10 gi|305662684|ref|YP_003858972.1| - 0.028 13.9 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 dNK PF01712.19 gi|305662684|ref|YP_003858972.1| - 0.035 14.0 0.2 0.11 12.3 0.1 1.8 1 1 1 2 2 2 0 Deoxynucleoside kinase Rad17 PF03215.15 gi|305662684|ref|YP_003858972.1| - 0.061 13.2 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|305662684|ref|YP_003858972.1| - 0.086 13.2 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|305662684|ref|YP_003858972.1| - 0.19 11.4 0.2 0.22 11.2 0.1 1.4 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|305662684|ref|YP_003858972.1| - 0.22 11.6 3.6 2.1 8.4 3.6 2.2 1 1 0 1 1 1 0 Helicase HerA, central domain Snf7 PF03357.21 gi|305662685|ref|YP_003858973.1| - 0.00016 21.3 0.1 0.00024 20.7 0.1 1.3 1 0 0 1 1 1 1 Snf7 Ist1 PF03398.14 gi|305662685|ref|YP_003858973.1| - 0.037 14.0 0.6 0.074 13.0 0.6 1.5 1 0 0 1 1 1 0 Regulator of Vps4 activity in the MVB pathway BLOC1S3 PF15753.5 gi|305662685|ref|YP_003858973.1| - 0.044 13.9 0.1 0.093 12.9 0.1 1.6 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex 1 subunit 3 HisK_N PF09385.10 gi|305662685|ref|YP_003858973.1| - 0.065 13.2 1.0 0.24 11.4 0.3 2.1 2 1 0 2 2 2 0 Histidine kinase N terminal LOH1CR12 PF10158.9 gi|305662685|ref|YP_003858973.1| - 0.28 11.2 1.8 0.63 10.1 0.3 2.2 2 1 1 3 3 3 0 Tumour suppressor protein Ribosomal_L35Ae PF01247.18 gi|305662686|ref|YP_003858974.1| - 2.1e-09 37.4 0.7 5.5e-09 36.1 0.7 1.6 1 1 0 1 1 1 1 Ribosomal protein L35Ae LSM14 PF12701.7 gi|305662686|ref|YP_003858974.1| - 0.001 19.1 0.5 0.004 17.2 0.1 1.9 2 0 0 2 2 2 1 Scd6-like Sm domain Tudor_2 PF18104.1 gi|305662686|ref|YP_003858974.1| - 0.0041 16.7 0.1 0.0079 15.8 0.1 1.5 1 0 0 1 1 1 1 Jumonji domain-containing protein 2A Tudor domain TUDOR_5 PF18359.1 gi|305662686|ref|YP_003858974.1| - 0.011 15.4 0.1 0.02 14.6 0.1 1.5 1 0 0 1 1 1 0 Histone methyltransferase Tudor domain 1 HlyD_3 PF13437.6 gi|305662686|ref|YP_003858974.1| - 0.015 16.0 0.1 0.017 15.8 0.1 1.2 1 0 0 1 1 1 0 HlyD family secretion protein DNA_ligase_A_M PF01068.21 gi|305662687|ref|YP_003858975.1| - 1.3e-60 204.5 0.1 1.9e-60 204.0 0.1 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|305662687|ref|YP_003858975.1| - 3e-35 122.1 0.1 6.9e-35 120.9 0.1 1.6 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|305662687|ref|YP_003858975.1| - 8.4e-28 96.9 0.0 2.9e-27 95.1 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.6 gi|305662687|ref|YP_003858975.1| - 8.9e-05 22.4 0.1 0.038 14.0 0.0 2.6 2 0 0 2 2 2 2 DNA ligase OB-like domain RNA_ligase PF09414.10 gi|305662687|ref|YP_003858975.1| - 0.00016 22.0 0.2 0.00025 21.4 0.2 1.3 1 0 0 1 1 1 1 RNA ligase TPR_22 PF18833.1 gi|305662687|ref|YP_003858975.1| - 0.13 12.4 0.0 0.44 10.7 0.0 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat HTH_6 PF01418.17 gi|305662687|ref|YP_003858975.1| - 0.13 12.2 0.0 0.49 10.4 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Asparaginase PF00710.20 gi|305662688|ref|YP_003858976.1| - 2.9e-58 196.6 0.2 6.9e-58 195.4 0.1 1.6 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|305662688|ref|YP_003858976.1| - 1.7e-34 118.4 0.1 5.5e-34 116.8 0.0 1.9 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|305662688|ref|YP_003858976.1| - 4.9e-20 70.6 1.2 8.2e-20 69.9 0.5 1.8 2 0 0 2 2 2 1 GatD N-terminal domain Thioredoxin_4 PF13462.6 gi|305662689|ref|YP_003858977.1| - 2.4e-09 37.6 0.0 3.8e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|305662689|ref|YP_003858977.1| - 9.5e-06 26.0 0.0 0.017 15.6 0.0 2.4 2 0 0 2 2 2 2 Thioredoxin-like domain SP_C-Propep PF08999.10 gi|305662689|ref|YP_003858977.1| - 0.04 13.7 1.4 0.083 12.7 0.9 1.8 2 0 0 2 2 2 0 Surfactant protein C, N terminal propeptide DUF5038 PF16441.5 gi|305662689|ref|YP_003858977.1| - 0.055 13.5 0.0 0.099 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5038) ATP_bind_1 PF03029.17 gi|305662690|ref|YP_003858978.1| - 1.1e-46 159.5 0.0 1.3e-46 159.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|305662690|ref|YP_003858978.1| - 0.0001 21.9 0.6 0.00084 18.9 0.4 2.3 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|305662690|ref|YP_003858978.1| - 0.00031 20.8 0.2 0.0036 17.4 0.2 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|305662690|ref|YP_003858978.1| - 0.0026 17.5 3.3 6.9 6.4 0.0 3.7 3 1 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.22 gi|305662690|ref|YP_003858978.1| - 0.004 16.8 0.0 2 8.0 0.2 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain Gtr1_RagA PF04670.12 gi|305662690|ref|YP_003858978.1| - 0.0042 16.5 4.9 0.033 13.5 1.4 2.3 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region AAA_5 PF07728.14 gi|305662690|ref|YP_003858978.1| - 0.0094 15.9 0.0 0.027 14.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|305662690|ref|YP_003858978.1| - 0.01 16.1 0.0 0.081 13.2 0.0 2.4 1 1 1 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|305662690|ref|YP_003858978.1| - 0.012 15.5 1.2 1.9 8.4 0.0 3.1 3 0 0 3 3 3 0 RsgA GTPase ArsA_ATPase PF02374.15 gi|305662690|ref|YP_003858978.1| - 0.027 13.7 0.0 0.53 9.4 0.0 2.4 2 1 0 2 2 2 0 Anion-transporting ATPase AAA_24 PF13479.6 gi|305662690|ref|YP_003858978.1| - 0.028 14.2 0.4 0.32 10.7 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|305662690|ref|YP_003858978.1| - 0.044 14.2 0.0 0.076 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain CbiA PF01656.23 gi|305662690|ref|YP_003858978.1| - 0.065 13.3 0.0 0.12 12.5 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|305662690|ref|YP_003858978.1| - 0.13 11.3 0.2 1.3 7.9 0.0 2.4 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Glycos_transf_4 PF00953.21 gi|305662691|ref|YP_003858979.1| - 1.6e-22 80.2 12.0 1.6e-22 80.2 12.0 2.1 3 1 0 3 3 3 1 Glycosyl transferase family 4 Metallophos_2 PF12850.7 gi|305662692|ref|YP_003858980.1| - 1.4e-23 83.9 0.0 1.8e-23 83.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|305662692|ref|YP_003858980.1| - 1.1e-08 35.8 0.3 1.4e-06 28.9 0.1 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase PadR PF03551.14 gi|305662693|ref|YP_003858981.1| - 1.5e-18 66.5 0.3 2.4e-18 65.8 0.3 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|305662693|ref|YP_003858981.1| - 0.00031 20.7 0.1 0.00057 19.8 0.1 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|305662693|ref|YP_003858981.1| - 0.0005 20.2 0.0 0.0022 18.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|305662693|ref|YP_003858981.1| - 0.00089 19.4 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation TrmB PF01978.19 gi|305662693|ref|YP_003858981.1| - 0.025 14.4 0.2 0.12 12.2 0.2 2.2 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF505 PF04458.12 gi|305662693|ref|YP_003858981.1| - 0.033 12.6 0.0 0.039 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF1495 PF07381.11 gi|305662693|ref|YP_003858981.1| - 0.11 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF2587 PF10759.9 gi|305662693|ref|YP_003858981.1| - 0.14 11.6 0.7 0.29 10.6 0.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2587) ABC_tran PF00005.27 gi|305662694|ref|YP_003858982.1| - 1.3e-31 109.9 0.0 2e-31 109.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305662694|ref|YP_003858982.1| - 1.2e-12 48.3 0.6 1.1e-07 32.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|305662694|ref|YP_003858982.1| - 5.7e-08 33.4 0.1 1.2e-07 32.3 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA PF00004.29 gi|305662694|ref|YP_003858982.1| - 0.00034 21.0 0.2 0.0086 16.5 0.1 2.8 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|305662694|ref|YP_003858982.1| - 0.002 17.8 0.0 0.0045 16.6 0.0 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|305662694|ref|YP_003858982.1| - 0.0025 18.3 0.4 0.0036 17.8 0.4 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|305662694|ref|YP_003858982.1| - 0.0034 17.1 0.1 0.0062 16.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|305662694|ref|YP_003858982.1| - 0.0044 16.8 0.0 1.6 8.3 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain MeaB PF03308.16 gi|305662694|ref|YP_003858982.1| - 0.0083 15.1 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SMC_N PF02463.19 gi|305662694|ref|YP_003858982.1| - 0.0098 15.4 0.0 0.22 10.9 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|305662694|ref|YP_003858982.1| - 0.054 13.2 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|305662694|ref|YP_003858982.1| - 0.077 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|305662694|ref|YP_003858982.1| - 0.081 13.2 0.0 0.71 10.1 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|305662694|ref|YP_003858982.1| - 0.16 11.9 0.0 0.62 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|305662695|ref|YP_003858983.1| - 1.2e-37 129.4 19.5 1.2e-37 129.4 19.5 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|305662695|ref|YP_003858983.1| - 4e-16 59.1 22.9 4e-16 59.1 22.9 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein MarC PF01914.17 gi|305662696|ref|YP_003858984.1| - 3.3e-30 105.0 25.5 4.1e-30 104.7 25.5 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein EamA PF00892.20 gi|305662697|ref|YP_003858985.1| - 4.5e-25 88.4 35.7 7.1e-14 52.1 15.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family NTPase_I-T PF01931.18 gi|305662698|ref|YP_003858986.1| - 3.2e-49 166.8 0.0 3.6e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Peptidase_S8 PF00082.22 gi|305662699|ref|YP_003858987.1| - 1.4e-32 113.1 0.0 6e-32 111.1 0.0 1.9 1 1 0 1 1 1 1 Subtilase family Big_8 PF17961.1 gi|305662699|ref|YP_003858987.1| - 0.38 10.9 6.4 15 5.8 0.1 3.3 2 1 0 3 3 3 0 Bacterial Ig domain PfkB PF00294.24 gi|305662700|ref|YP_003858988.1| - 4.2e-74 249.6 0.1 5.7e-74 249.1 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|305662700|ref|YP_003858988.1| - 2.5e-14 53.3 0.0 3.5e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|305662700|ref|YP_003858988.1| - 0.0071 15.9 0.1 0.014 14.9 0.0 1.4 2 0 0 2 2 2 1 Carbohydrate kinase HAD_2 PF13419.6 gi|305662701|ref|YP_003858989.1| - 8.3e-13 48.8 4.3 2.6e-11 43.9 4.3 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|305662701|ref|YP_003858989.1| - 3.4e-08 34.0 0.1 0.00067 20.0 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|305662701|ref|YP_003858989.1| - 3.6e-08 33.3 0.9 2.8e-06 27.2 0.9 2.9 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Acid_PPase PF12689.7 gi|305662701|ref|YP_003858989.1| - 0.0046 16.8 0.2 0.017 15.0 0.2 2.1 1 1 0 1 1 1 1 Acid Phosphatase Hydrolase_like PF13242.6 gi|305662701|ref|YP_003858989.1| - 0.0084 16.1 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 gi|305662701|ref|YP_003858989.1| - 0.15 11.7 2.9 13 5.4 0.3 3.0 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase SAICAR_synt PF01259.18 gi|305662702|ref|YP_003858990.1| - 1.3e-51 175.7 0.1 1.6e-51 175.3 0.1 1.1 1 0 0 1 1 1 1 SAICAR synthetase Pab87_oct PF13969.6 gi|305662702|ref|YP_003858990.1| - 0.071 13.2 0.1 0.94 9.6 0.0 2.3 2 0 0 2 2 2 0 Pab87 octamerisation domain PurS PF02700.14 gi|305662703|ref|YP_003858991.1| - 4e-25 87.8 0.1 4.4e-25 87.6 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 gi|305662704|ref|YP_003858992.1| - 4.7e-43 147.1 0.0 9e-43 146.2 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|305662704|ref|YP_003858992.1| - 5.4e-08 32.7 0.0 8.4e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|305662704|ref|YP_003858992.1| - 5.6e-08 32.8 0.0 8.1e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|305662704|ref|YP_003858992.1| - 2.8e-07 30.5 0.0 4.4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|305662704|ref|YP_003858992.1| - 0.00036 20.3 0.0 0.00062 19.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|305662704|ref|YP_003858992.1| - 0.0037 17.1 0.0 0.0093 15.8 0.0 1.6 2 0 0 2 2 2 1 SNO glutamine amidotransferase family AIRS_C PF02769.22 gi|305662705|ref|YP_003858993.1| - 3e-44 150.9 0.0 2.6e-27 95.9 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|305662705|ref|YP_003858993.1| - 7.8e-44 148.3 0.0 8.8e-23 80.8 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|305662705|ref|YP_003858993.1| - 2.7e-11 43.8 0.1 5.8e-11 42.8 0.1 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GATase_7 PF13537.6 gi|305662706|ref|YP_003858994.1| - 1.2e-13 51.0 0.0 1.9e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|305662706|ref|YP_003858994.1| - 5.5e-13 49.3 0.0 8.4e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|305662706|ref|YP_003858994.1| - 4.5e-08 32.8 0.3 9.6e-08 31.7 0.3 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|305662706|ref|YP_003858994.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Pribosyltran PF00156.27 gi|305662707|ref|YP_003858995.1| - 5.4e-07 29.3 0.0 1.2e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Lipoprotein_22 PF17294.2 gi|305662707|ref|YP_003858995.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised lipoprotein family GARS_A PF01071.19 gi|305662708|ref|YP_003858996.1| - 4.4e-39 134.3 0.0 7.6e-39 133.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|305662708|ref|YP_003858996.1| - 6.1e-21 75.0 0.0 1e-20 74.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|305662708|ref|YP_003858996.1| - 3.3e-11 43.3 0.0 1e-10 41.7 0.0 1.9 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|305662708|ref|YP_003858996.1| - 1.6e-05 25.0 0.0 7.1e-05 22.9 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|305662708|ref|YP_003858996.1| - 4.8e-05 23.0 0.0 9.2e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|305662708|ref|YP_003858996.1| - 0.00066 19.1 0.1 0.0012 18.3 0.1 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|305662708|ref|YP_003858996.1| - 0.0053 16.0 0.0 0.0085 15.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|305662708|ref|YP_003858996.1| - 0.036 13.6 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_TupA PF14305.6 gi|305662708|ref|YP_003858996.1| - 0.036 13.8 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 TupA-like ATPgrasp Oxidored_nitro PF00148.19 gi|305662708|ref|YP_003858996.1| - 0.06 12.1 0.0 0.088 11.5 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Dala_Dala_lig_C PF07478.13 gi|305662708|ref|YP_003858996.1| - 0.087 12.4 0.2 0.17 11.4 0.2 1.5 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus ATPgrasp_YheCD PF14398.6 gi|305662708|ref|YP_003858996.1| - 0.17 11.1 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 YheC/D like ATP-grasp ATP-grasp PF02222.22 gi|305662709|ref|YP_003858997.1| - 2.6e-40 137.8 0.0 4.7e-40 136.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|305662709|ref|YP_003858997.1| - 2.3e-09 37.1 0.0 7.9e-09 35.4 0.0 1.8 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|305662709|ref|YP_003858997.1| - 3.6e-05 23.3 0.0 6.5e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RmlD_sub_bind PF04321.17 gi|305662709|ref|YP_003858997.1| - 0.00031 19.9 0.0 0.00048 19.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 2-Hacid_dh_C PF02826.19 gi|305662709|ref|YP_003858997.1| - 0.0045 16.4 0.0 0.0096 15.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|305662709|ref|YP_003858997.1| - 0.0054 16.2 0.0 0.0078 15.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ATP-grasp_5 PF13549.6 gi|305662709|ref|YP_003858997.1| - 0.0079 15.7 0.0 0.018 14.5 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|305662709|ref|YP_003858997.1| - 0.013 15.3 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_N PF18130.1 gi|305662709|ref|YP_003858997.1| - 0.047 14.3 1.7 0.26 11.9 0.1 2.9 3 0 0 3 3 3 0 ATP-grasp N-terminal domain Pyr_redox PF00070.27 gi|305662709|ref|YP_003858997.1| - 0.12 12.9 0.1 0.83 10.3 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ATPgrasp_YheCD PF14398.6 gi|305662709|ref|YP_003858997.1| - 0.2 10.9 0.0 0.9 8.7 0.0 2.0 1 1 1 2 2 2 0 YheC/D like ATP-grasp AIRC PF00731.20 gi|305662710|ref|YP_003858998.1| - 7.5e-51 171.6 0.4 8.1e-51 171.5 0.4 1.0 1 0 0 1 1 1 1 AIR carboxylase GST_N_2 PF13409.6 gi|305662710|ref|YP_003858998.1| - 0.0053 17.0 0.0 0.0061 16.8 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|305662710|ref|YP_003858998.1| - 0.025 14.9 0.0 0.038 14.3 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|305662710|ref|YP_003858998.1| - 0.14 12.4 0.0 0.34 11.2 0.0 1.6 2 0 0 2 2 2 0 Glutaredoxin AIRS_C PF02769.22 gi|305662711|ref|YP_003858999.1| - 1.3e-21 77.3 0.0 6.6e-21 75.1 0.0 2.0 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|305662711|ref|YP_003858999.1| - 9e-16 58.3 0.2 2.5e-15 56.9 0.2 1.8 1 1 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF1297 PF06973.12 gi|305662712|ref|YP_003859000.1| - 1.3e-78 262.9 0.4 1.6e-78 262.6 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|305662712|ref|YP_003859000.1| - 3.5e-48 162.6 0.0 5.8e-48 161.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) Lyase_1 PF00206.20 gi|305662713|ref|YP_003859001.1| - 1.4e-43 149.5 0.0 1.9e-43 149.1 0.0 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|305662713|ref|YP_003859001.1| - 5.2e-15 55.7 0.0 1.7e-14 54.1 0.0 1.9 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|305662713|ref|YP_003859001.1| - 1e-05 25.6 0.3 2.3e-05 24.5 0.3 1.6 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ASL_C2 PF14698.6 gi|305662713|ref|YP_003859001.1| - 0.057 14.2 0.0 0.21 12.3 0.0 2.0 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal DUF1297 PF06973.12 gi|305662714|ref|YP_003859002.1| - 6.8e-76 254.0 0.1 1e-75 253.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|305662714|ref|YP_003859002.1| - 1.2e-45 154.4 0.0 1.9e-45 153.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) CPSase_L_D2 PF02786.17 gi|305662714|ref|YP_003859002.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Fae PF08714.11 gi|305662715|ref|YP_003859003.1| - 7e-75 250.3 0.1 7.8e-75 250.2 0.1 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) DUF447 PF04289.12 gi|305662716|ref|YP_003859004.1| - 2e-20 73.3 0.1 2.4e-20 73.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) DUF1464 PF07318.12 gi|305662717|ref|YP_003859005.1| - 1.7e-83 280.5 5.4 1.9e-83 280.3 5.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) Acetate_kinase PF00871.17 gi|305662717|ref|YP_003859005.1| - 4.4e-07 28.9 0.4 2.9e-06 26.2 0.4 1.9 1 1 0 1 1 1 1 Acetokinase family DHNA PF04038.12 gi|305662718|ref|YP_003859006.1| - 6.2e-35 120.0 0.0 7.1e-35 119.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Flavoprotein PF02441.19 gi|305662719|ref|YP_003859007.1| - 6.9e-15 55.1 0.1 8.9e-15 54.8 0.1 1.5 1 1 0 1 1 1 1 Flavoprotein Fer4_6 PF12837.7 gi|305662719|ref|YP_003859007.1| - 4e-08 33.0 12.8 1.1e-06 28.5 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|305662719|ref|YP_003859007.1| - 1.2e-07 31.7 23.2 2.5e-05 24.3 2.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|305662719|ref|YP_003859007.1| - 2.1e-07 30.5 2.2 2.1e-07 30.5 2.2 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|305662719|ref|YP_003859007.1| - 3.3e-05 23.7 10.8 8.9e-05 22.4 1.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|305662719|ref|YP_003859007.1| - 4.4e-05 23.5 10.8 7.1e-05 22.9 0.8 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|305662719|ref|YP_003859007.1| - 0.00022 22.1 7.9 0.0064 17.4 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|305662719|ref|YP_003859007.1| - 0.00035 21.1 9.9 0.00035 21.1 9.9 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|305662719|ref|YP_003859007.1| - 0.00048 20.5 0.4 0.00048 20.5 0.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|305662719|ref|YP_003859007.1| - 0.0026 18.2 3.0 0.0026 18.2 3.0 2.8 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|305662719|ref|YP_003859007.1| - 0.0056 17.5 4.0 0.0056 17.5 4.0 2.8 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|305662719|ref|YP_003859007.1| - 0.021 15.0 11.3 0.021 15.0 11.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|305662719|ref|YP_003859007.1| - 0.079 13.5 1.1 0.079 13.5 1.1 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Pterin_bind PF00809.22 gi|305662720|ref|YP_003859008.1| - 1.3e-10 41.3 0.1 2.3e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.6 gi|305662720|ref|YP_003859008.1| - 8.9e-10 38.6 0.2 3e-08 33.7 0.1 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) GHMP_kinases_C PF08544.13 gi|305662721|ref|YP_003859009.1| - 6.5e-06 26.4 0.0 1.1e-05 25.8 0.0 1.3 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|305662721|ref|YP_003859009.1| - 0.00058 20.1 0.0 0.0011 19.1 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain MAF_flag10 PF01973.18 gi|305662722|ref|YP_003859010.1| - 8.8e-25 87.4 0.1 1.2e-24 86.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 GCHY-1 PF02649.14 gi|305662723|ref|YP_003859011.1| - 2.4e-55 187.9 0.2 2.7e-55 187.7 0.2 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 Meth_synt_2 PF01717.18 gi|305662724|ref|YP_003859012.1| - 9.4e-06 25.1 0.0 1.4e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|305662724|ref|YP_003859012.1| - 0.0063 16.1 0.0 0.0096 15.5 0.0 1.4 1 1 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Metallophos PF00149.28 gi|305662725|ref|YP_003859013.1| - 1.4e-26 94.2 0.1 2.2e-26 93.6 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Pyr_redox_2 PF07992.14 gi|305662726|ref|YP_003859014.1| - 1.8e-64 217.8 0.8 2.2e-64 217.5 0.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|305662726|ref|YP_003859014.1| - 6.9e-22 77.8 7.3 1.3e-18 67.3 0.5 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|305662726|ref|YP_003859014.1| - 4.4e-17 62.3 3.4 4.1e-15 55.8 0.1 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|305662726|ref|YP_003859014.1| - 2e-16 60.2 0.5 9.5e-16 58.0 0.0 2.3 2 1 1 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|305662726|ref|YP_003859014.1| - 1e-09 38.5 3.9 0.0068 16.0 0.4 3.8 4 0 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|305662726|ref|YP_003859014.1| - 5.1e-06 26.6 0.7 0.0068 16.6 0.1 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|305662726|ref|YP_003859014.1| - 5.4e-06 25.4 7.0 0.0088 14.8 1.2 4.0 3 1 1 4 4 4 1 HI0933-like protein FAD_oxidored PF12831.7 gi|305662726|ref|YP_003859014.1| - 2e-05 24.2 7.8 0.0022 17.4 1.6 3.4 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|305662726|ref|YP_003859014.1| - 0.00013 21.2 3.4 0.0073 15.4 0.9 2.8 3 1 0 4 4 4 1 FAD binding domain GIDA PF01134.22 gi|305662726|ref|YP_003859014.1| - 0.00031 19.9 11.5 0.0005 19.3 0.9 3.7 4 0 0 4 4 4 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|305662726|ref|YP_003859014.1| - 0.00043 19.3 0.3 0.00081 18.4 0.3 1.4 1 0 0 1 1 1 1 Tryptophan halogenase NAD_binding_7 PF13241.6 gi|305662726|ref|YP_003859014.1| - 0.0025 18.2 0.5 2.3 8.7 0.1 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding K_oxygenase PF13434.6 gi|305662726|ref|YP_003859014.1| - 0.0025 17.0 0.0 0.011 14.9 0.0 1.9 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|305662726|ref|YP_003859014.1| - 0.0078 15.3 0.7 0.0078 15.3 0.7 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein TrkA_N PF02254.18 gi|305662726|ref|YP_003859014.1| - 0.011 16.0 0.2 2.6 8.3 0.0 2.9 2 1 0 2 2 2 0 TrkA-N domain GFO_IDH_MocA PF01408.22 gi|305662726|ref|YP_003859014.1| - 0.042 14.7 0.1 2.5 8.9 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.21 gi|305662726|ref|YP_003859014.1| - 0.06 12.6 5.4 0.054 12.8 1.2 2.7 3 1 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Haemagg_act PF05860.13 gi|305662726|ref|YP_003859014.1| - 0.071 13.0 0.3 0.59 10.0 0.3 2.3 2 0 0 2 2 2 0 haemagglutination activity domain DUF4840 PF16128.5 gi|305662726|ref|YP_003859014.1| - 0.072 13.2 0.2 0.13 12.4 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4840) NAD_binding_9 PF13454.6 gi|305662726|ref|YP_003859014.1| - 0.17 11.8 2.2 44 4.0 0.1 3.6 4 0 0 4 4 4 0 FAD-NAD(P)-binding DUF2929 PF11151.8 gi|305662727|ref|YP_003859015.1| - 0.011 16.0 6.8 0.016 15.5 6.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2929) DUF3043 PF11241.8 gi|305662727|ref|YP_003859015.1| - 0.017 15.2 2.3 0.018 15.1 2.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) Gemini_AL3 PF01407.17 gi|305662727|ref|YP_003859015.1| - 0.047 13.5 0.4 0.047 13.5 0.4 1.1 1 0 0 1 1 1 0 Geminivirus AL3 protein DUF2207 PF09972.9 gi|305662727|ref|YP_003859015.1| - 0.26 10.0 3.3 0.3 9.8 3.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DHHC PF01529.20 gi|305662727|ref|YP_003859015.1| - 4.1 7.5 10.0 27 4.9 0.7 1.9 1 1 1 2 2 2 0 DHHC palmitoyltransferase FeoB_associated PF12669.7 gi|305662727|ref|YP_003859015.1| - 5 7.6 5.3 3.4 8.1 0.4 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein BatA PF07584.11 gi|305662727|ref|YP_003859015.1| - 6.5 7.2 9.2 2.2 8.7 0.6 2.1 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal HypA PF01155.19 gi|305662728|ref|YP_003859016.1| - 0.0014 18.7 0.1 0.0022 18.0 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|305662728|ref|YP_003859016.1| - 0.0029 17.7 2.4 0.0054 16.8 2.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|305662728|ref|YP_003859016.1| - 0.013 15.5 0.3 0.019 15.0 0.3 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type CSN8_PSD8_EIF3K PF10075.9 gi|305662728|ref|YP_003859016.1| - 0.041 13.9 0.0 0.05 13.6 0.0 1.2 1 0 0 1 1 1 0 CSN8/PSMD8/EIF3K family DUF1451 PF07295.11 gi|305662728|ref|YP_003859016.1| - 0.061 13.4 0.9 0.12 12.4 0.9 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain ADK_lid PF05191.14 gi|305662728|ref|YP_003859016.1| - 0.15 12.1 3.8 0.22 11.6 3.0 1.7 1 1 1 2 2 2 0 Adenylate kinase, active site lid UPF0547 PF10571.9 gi|305662728|ref|YP_003859016.1| - 0.78 9.9 6.8 1.2 9.2 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|305662728|ref|YP_003859016.1| - 1.4 8.9 6.9 0.52 10.3 1.7 2.1 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-FPG_IleRS PF06827.14 gi|305662728|ref|YP_003859016.1| - 2.3 8.1 7.5 5.1 7.1 0.8 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS NRDD PF13597.6 gi|305662729|ref|YP_003859017.1| - 8.8e-133 444.0 0.0 1e-132 443.8 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.7 gi|305662729|ref|YP_003859017.1| - 0.0012 18.8 0.1 0.0023 17.9 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF1310 PF07006.11 gi|305662729|ref|YP_003859017.1| - 0.0038 17.2 0.0 0.0086 16.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1310) zinc_ribbon_2 PF13240.6 gi|305662729|ref|YP_003859017.1| - 0.0057 16.3 0.9 0.0057 16.3 0.9 1.8 2 0 0 2 2 2 1 zinc-ribbon domain TackOD1 PF18551.1 gi|305662729|ref|YP_003859017.1| - 0.0091 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 DUF35_N PF12172.8 gi|305662729|ref|YP_003859017.1| - 0.017 15.0 2.3 0.033 14.1 2.3 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) OrfB_Zn_ribbon PF07282.11 gi|305662729|ref|YP_003859017.1| - 0.031 14.2 0.3 0.061 13.3 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-RING_7 PF02591.15 gi|305662729|ref|YP_003859017.1| - 0.034 14.3 0.7 3.2 8.0 0.0 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|305662729|ref|YP_003859017.1| - 0.079 13.7 0.1 0.14 12.9 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon family Ribosomal_L32p PF01783.23 gi|305662729|ref|YP_003859017.1| - 0.089 13.1 0.5 0.19 12.0 0.5 1.4 1 0 0 1 1 1 0 Ribosomal L32p protein family zf-C3HC4_3 PF13920.6 gi|305662729|ref|YP_003859017.1| - 0.12 12.2 0.3 0.21 11.5 0.3 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.19 gi|305662729|ref|YP_003859017.1| - 0.14 12.2 0.1 0.29 11.1 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|305662729|ref|YP_003859017.1| - 0.21 11.7 0.7 0.5 10.5 0.7 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|305662729|ref|YP_003859017.1| - 0.39 10.9 2.9 8.4 6.6 0.1 2.6 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|305662729|ref|YP_003859017.1| - 1.2 8.6 9.8 3.2 7.3 0.6 2.8 2 1 0 3 3 3 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|305662729|ref|YP_003859017.1| - 1.8 8.6 3.8 23 5.1 0.3 2.5 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger zf-NADH-PPase PF09297.11 gi|305662729|ref|YP_003859017.1| - 2 8.1 5.1 16 5.3 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Hjc PF01870.18 gi|305662730|ref|YP_003859018.1| - 0.06 13.3 0.1 0.12 12.3 0.1 1.4 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) DUF2148 PF09918.9 gi|305662731|ref|YP_003859019.1| - 1.6e-27 95.3 1.8 3.5e-27 94.2 1.8 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) DUF190 PF02641.15 gi|305662731|ref|YP_003859019.1| - 0.038 14.3 0.2 3.2 8.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized ACR, COG1993 ABC_tran PF00005.27 gi|305662732|ref|YP_003859020.1| - 1.4e-21 77.5 0.0 1.9e-21 77.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305662732|ref|YP_003859020.1| - 1.2e-09 38.4 2.9 0.00011 22.1 0.4 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305662732|ref|YP_003859020.1| - 4.3e-05 23.1 0.0 0.051 13.0 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|305662732|ref|YP_003859020.1| - 7.6e-05 22.4 0.0 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|305662732|ref|YP_003859020.1| - 0.00029 21.4 0.0 0.0005 20.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|305662732|ref|YP_003859020.1| - 0.0017 18.0 0.0 0.0025 17.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|305662732|ref|YP_003859020.1| - 0.0042 17.2 0.0 0.0067 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305662732|ref|YP_003859020.1| - 0.0099 16.3 0.0 0.016 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|305662732|ref|YP_003859020.1| - 0.011 15.6 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|305662732|ref|YP_003859020.1| - 0.017 13.8 0.3 3.7 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|305662732|ref|YP_003859020.1| - 0.028 14.3 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|305662732|ref|YP_003859020.1| - 0.035 14.2 0.0 0.058 13.5 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|305662732|ref|YP_003859020.1| - 0.037 13.7 0.5 0.045 13.5 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|305662732|ref|YP_003859020.1| - 0.047 13.6 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|305662732|ref|YP_003859020.1| - 0.055 13.2 0.0 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain HTH_5 PF01022.20 gi|305662732|ref|YP_003859020.1| - 0.068 13.1 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AAA_22 PF13401.6 gi|305662732|ref|YP_003859020.1| - 0.11 12.8 0.0 0.48 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|305662732|ref|YP_003859020.1| - 0.19 11.8 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF2688 PF10892.8 gi|305662732|ref|YP_003859020.1| - 1.2 8.7 4.6 0.72 9.4 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2688) UPF0051 PF01458.17 gi|305662733|ref|YP_003859021.1| - 1.6e-50 171.8 0.0 2e-50 171.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Carb_kinase PF01256.17 gi|305662734|ref|YP_003859022.1| - 9e-45 153.1 0.0 2.9e-43 148.1 0.0 2.3 3 0 0 3 3 3 1 Carbohydrate kinase YjeF_N PF03853.15 gi|305662734|ref|YP_003859022.1| - 1.5e-37 129.1 0.0 2.7e-37 128.3 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus Tex_YqgF PF16921.5 gi|305662734|ref|YP_003859022.1| - 0.0012 19.3 0.1 0.037 14.5 0.0 2.3 2 0 0 2 2 2 1 Tex protein YqgF-like domain Phos_pyr_kin PF08543.12 gi|305662734|ref|YP_003859022.1| - 0.095 12.1 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase DUF1717 PF05414.11 gi|305662734|ref|YP_003859022.1| - 0.11 13.0 0.7 0.33 11.4 0.1 2.2 2 0 0 2 2 2 0 Viral domain of unknown function (DUF1717) PA28_alpha PF02251.18 gi|305662734|ref|YP_003859022.1| - 0.13 12.4 0.2 0.27 11.3 0.2 1.5 1 0 0 1 1 1 0 Proteasome activator pa28 alpha subunit FF PF01846.19 gi|305662734|ref|YP_003859022.1| - 0.22 11.7 0.0 0.5 10.6 0.0 1.5 1 0 0 1 1 1 0 FF domain Thi4 PF01946.17 gi|305662735|ref|YP_003859023.1| - 4.3e-79 265.0 0.9 5e-79 264.8 0.9 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|305662735|ref|YP_003859023.1| - 2.3e-12 47.2 3.5 2.5e-07 30.6 1.8 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|305662735|ref|YP_003859023.1| - 2.8e-09 36.6 3.3 2.7e-05 23.5 1.1 3.0 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.19 gi|305662735|ref|YP_003859023.1| - 2.5e-08 33.6 0.1 3.9e-08 32.9 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|305662735|ref|YP_003859023.1| - 7.9e-08 32.4 2.9 7.9e-08 32.4 2.9 2.2 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|305662735|ref|YP_003859023.1| - 1.5e-07 30.9 0.0 2.4e-07 30.3 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|305662735|ref|YP_003859023.1| - 3e-06 26.9 2.5 4.4e-06 26.3 2.5 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|305662735|ref|YP_003859023.1| - 1.3e-05 24.1 1.0 2.4e-05 23.2 1.0 1.4 1 0 0 1 1 1 1 HI0933-like protein Amino_oxidase PF01593.24 gi|305662735|ref|YP_003859023.1| - 5.7e-05 22.6 0.2 0.00012 21.5 0.2 1.5 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|305662735|ref|YP_003859023.1| - 0.00062 19.1 0.0 0.0012 18.1 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|305662735|ref|YP_003859023.1| - 0.01 15.0 0.5 0.018 14.2 0.5 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|305662735|ref|YP_003859023.1| - 0.011 14.6 1.8 0.024 13.5 0.8 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|305662735|ref|YP_003859023.1| - 0.014 14.5 0.3 0.033 13.2 0.1 1.7 3 0 0 3 3 3 0 Lycopene cyclase protein Pyr_redox PF00070.27 gi|305662735|ref|YP_003859023.1| - 0.015 15.9 0.7 0.044 14.3 0.7 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|305662735|ref|YP_003859023.1| - 0.024 14.0 0.1 0.056 12.8 0.0 1.6 2 0 0 2 2 2 0 ThiF family Shikimate_DH PF01488.20 gi|305662735|ref|YP_003859023.1| - 0.026 14.6 0.0 0.059 13.4 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Glu_dehyd_C PF16912.5 gi|305662735|ref|YP_003859023.1| - 0.046 13.2 0.2 0.41 10.1 0.0 2.4 3 0 0 3 3 3 0 Glucose dehydrogenase C-terminus XdhC_C PF13478.6 gi|305662735|ref|YP_003859023.1| - 0.047 14.2 0.0 0.066 13.7 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_9 PF13454.6 gi|305662735|ref|YP_003859023.1| - 0.069 13.1 1.3 0.13 12.2 1.3 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|305662735|ref|YP_003859023.1| - 0.18 10.9 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) DUF438 PF04282.13 gi|305662736|ref|YP_003859024.1| - 9.2e-23 80.0 1.0 9.2e-23 80.0 1.0 2.3 2 0 0 2 2 2 1 Family of unknown function (DUF438) PAS_10 PF13596.6 gi|305662736|ref|YP_003859024.1| - 6.9e-19 68.4 0.0 2.5e-18 66.6 0.0 2.0 2 0 0 2 2 2 1 PAS domain Hemerythrin PF01814.23 gi|305662736|ref|YP_003859024.1| - 1.2e-10 42.1 0.0 2.3e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain PAS_4 PF08448.10 gi|305662736|ref|YP_003859024.1| - 0.00013 22.1 0.0 0.00023 21.4 0.0 1.4 1 0 0 1 1 1 1 PAS fold DUF2802 PF10975.8 gi|305662736|ref|YP_003859024.1| - 0.011 15.9 0.2 1.5 9.0 0.1 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2802) PAS_9 PF13426.7 gi|305662736|ref|YP_003859024.1| - 0.015 15.6 0.0 0.036 14.3 0.0 1.7 1 0 0 1 1 1 0 PAS domain dCache_1 PF02743.18 gi|305662736|ref|YP_003859024.1| - 0.082 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Cache domain HTH_24 PF13412.6 gi|305662737|ref|YP_003859025.1| - 3.1e-06 26.6 0.6 6.6e-06 25.6 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|305662737|ref|YP_003859025.1| - 6.5e-05 22.5 0.1 0.00014 21.5 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|305662737|ref|YP_003859025.1| - 0.00015 21.7 0.1 0.00035 20.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|305662737|ref|YP_003859025.1| - 0.00042 19.8 0.1 0.001 18.6 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|305662737|ref|YP_003859025.1| - 0.00068 19.4 0.1 0.00068 19.4 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|305662737|ref|YP_003859025.1| - 0.0037 17.3 0.1 0.0086 16.1 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|305662737|ref|YP_003859025.1| - 0.0047 16.9 0.1 0.012 15.6 0.1 1.8 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|305662737|ref|YP_003859025.1| - 0.0053 16.6 0.0 0.041 13.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|305662737|ref|YP_003859025.1| - 0.008 15.9 0.2 0.008 15.9 0.2 3.1 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|305662737|ref|YP_003859025.1| - 0.0088 16.2 0.2 0.023 14.9 0.2 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|305662737|ref|YP_003859025.1| - 0.011 15.6 0.1 0.033 14.1 0.0 1.7 2 0 0 2 2 2 0 ECF sigma factor GerE PF00196.19 gi|305662737|ref|YP_003859025.1| - 0.019 14.5 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_19 PF12844.7 gi|305662737|ref|YP_003859025.1| - 0.024 14.6 0.2 0.053 13.6 0.2 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_50 PF18024.1 gi|305662737|ref|YP_003859025.1| - 0.028 14.0 0.2 0.028 14.0 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|305662737|ref|YP_003859025.1| - 0.033 14.1 0.1 0.086 12.8 0.1 1.8 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 gi|305662737|ref|YP_003859025.1| - 0.036 14.2 0.3 0.099 12.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|305662737|ref|YP_003859025.1| - 0.036 14.5 0.1 0.38 11.2 0.0 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain ADPrib_exo_Tox PF03496.14 gi|305662737|ref|YP_003859025.1| - 0.04 13.3 0.1 0.043 13.1 0.1 1.1 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme HTH_40 PF14493.6 gi|305662737|ref|YP_003859025.1| - 0.041 14.3 0.3 0.063 13.7 0.3 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.10 gi|305662737|ref|YP_003859025.1| - 0.042 13.9 0.0 0.067 13.2 0.0 1.4 1 0 0 1 1 1 0 KorB domain HTH_AsnC-type PF13404.6 gi|305662737|ref|YP_003859025.1| - 0.049 13.5 0.3 0.16 11.8 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Terminase_5 PF06056.12 gi|305662737|ref|YP_003859025.1| - 0.067 13.1 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) RepB PF07506.11 gi|305662737|ref|YP_003859025.1| - 0.069 13.2 0.0 0.12 12.5 0.0 1.4 1 1 0 1 1 1 0 RepB plasmid partitioning protein DUF2443 PF10398.9 gi|305662737|ref|YP_003859025.1| - 0.11 12.6 0.1 0.18 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2443) MarR_2 PF12802.7 gi|305662737|ref|YP_003859025.1| - 0.14 12.1 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_31 PF13560.6 gi|305662737|ref|YP_003859025.1| - 0.15 12.4 0.1 0.27 11.6 0.0 1.4 2 0 0 2 2 1 0 Helix-turn-helix domain CP2 PF04516.15 gi|305662738|ref|YP_003859026.1| - 0.1 11.9 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 CP2 transcription factor tRNA-synt_1b PF00579.25 gi|305662739|ref|YP_003859027.1| - 4.9e-27 95.0 0.0 1.2e-26 93.7 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Cofac_haem_bdg PF04187.13 gi|305662739|ref|YP_003859027.1| - 0.023 14.7 0.2 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 Haem-binding uptake, Tiki superfamily, ChaN HTH_17 PF12728.7 gi|305662739|ref|YP_003859027.1| - 0.34 11.1 2.7 0.73 10.1 0.3 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain LysE PF01810.18 gi|305662740|ref|YP_003859028.1| - 2.8e-26 92.2 16.6 3.2e-26 92.0 16.6 1.0 1 0 0 1 1 1 1 LysE type translocator DUF2684 PF10885.8 gi|305662740|ref|YP_003859028.1| - 0.047 13.8 0.6 0.047 13.8 0.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2684) Nitroreductase PF00881.24 gi|305662742|ref|YP_003859030.1| - 9.6e-33 113.6 1.2 6.2e-19 68.7 0.1 2.4 2 1 1 3 3 3 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|305662742|ref|YP_003859030.1| - 1.3e-15 57.6 0.0 6.2e-07 29.2 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase zf-HC5HC2H_2 PF13832.6 gi|305662742|ref|YP_003859030.1| - 0.19 11.9 0.0 0.25 11.5 0.0 1.2 1 0 0 1 1 1 0 PHD-zinc-finger like domain AAA_31 PF13614.6 gi|305662743|ref|YP_003859031.1| - 2.5e-25 89.4 0.0 3.6e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|305662743|ref|YP_003859031.1| - 4.3e-15 55.9 0.0 7e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|305662743|ref|YP_003859031.1| - 1.2e-07 31.3 0.0 3e-06 26.7 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.9 gi|305662743|ref|YP_003859031.1| - 3.1e-05 23.6 0.0 0.00024 20.6 0.0 2.0 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|305662743|ref|YP_003859031.1| - 6.6e-05 22.5 0.0 0.00023 20.7 0.0 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|305662743|ref|YP_003859031.1| - 0.00056 19.4 0.0 0.00085 18.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|305662743|ref|YP_003859031.1| - 0.0014 18.0 0.0 0.72 9.1 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ ATP_bind_1 PF03029.17 gi|305662743|ref|YP_003859031.1| - 0.0016 18.3 0.0 0.0034 17.2 0.0 1.6 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|305662743|ref|YP_003859031.1| - 0.21 10.6 0.0 0.3 10.0 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Vps55 PF04133.14 gi|305662744|ref|YP_003859032.1| - 0.052 13.5 3.0 0.086 12.8 0.2 2.0 1 1 1 2 2 2 0 Vacuolar protein sorting 55 NrfD PF03916.14 gi|305662746|ref|YP_003859034.1| - 0.0043 16.7 4.4 0.0058 16.3 4.4 1.2 1 0 0 1 1 1 1 Polysulphide reductase, NrfD DUF2070 PF09843.9 gi|305662746|ref|YP_003859034.1| - 2.8 6.1 12.0 3.3 5.9 12.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) PRA1 PF03208.19 gi|305662746|ref|YP_003859034.1| - 3.2 7.4 8.6 4.9 6.8 8.6 1.2 1 0 0 1 1 1 0 PRA1 family protein DUF751 PF05421.11 gi|305662747|ref|YP_003859035.1| - 0.45 11.3 4.2 0.15 12.8 1.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF751) IncD PF17628.2 gi|305662747|ref|YP_003859035.1| - 1.5 8.6 10.1 1.3 8.8 9.3 1.3 1 1 0 1 1 1 0 Inclusion membrane protein D Glyco_hydro_31 PF01055.26 gi|305662748|ref|YP_003859036.1| - 3.2e-135 451.7 4.6 4e-135 451.4 4.6 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 DUF5110 PF17137.4 gi|305662748|ref|YP_003859036.1| - 2.5e-17 62.9 0.3 8.6e-17 61.2 0.3 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5110) Gal_mutarotas_2 PF13802.6 gi|305662748|ref|YP_003859036.1| - 6.1e-08 32.9 1.2 4e-07 30.3 0.4 2.6 2 0 0 2 2 2 1 Galactose mutarotase-like DUF4968 PF16338.5 gi|305662748|ref|YP_003859036.1| - 7e-08 32.7 0.3 1.5e-07 31.7 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4968) Raffinose_syn PF05691.12 gi|305662749|ref|YP_003859037.1| - 3.5e-42 144.2 5.4 1.5e-25 89.2 0.1 3.9 2 2 1 3 3 3 3 Raffinose synthase or seed imbibition protein Sip1 Melibiase PF02065.18 gi|305662749|ref|YP_003859037.1| - 3.8e-05 22.8 1.9 0.0001 21.4 1.9 1.6 1 1 0 1 1 1 1 Melibiase Cellulase PF00150.18 gi|305662750|ref|YP_003859038.1| - 2.1e-07 30.7 0.0 3.6e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) DUF4434 PF14488.6 gi|305662750|ref|YP_003859038.1| - 5.4e-07 29.8 0.1 1.3e-06 28.5 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4434) Glyco_hydro_2_C PF02836.17 gi|305662750|ref|YP_003859038.1| - 3.2e-06 26.5 0.1 0.0045 16.1 0.0 2.5 2 1 0 2 2 2 2 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_42 PF02449.15 gi|305662750|ref|YP_003859038.1| - 0.00088 18.7 0.1 0.43 9.9 0.0 2.2 2 0 0 2 2 2 2 Beta-galactosidase Glyco_hydro_1 PF00232.18 gi|305662750|ref|YP_003859038.1| - 0.0057 15.1 0.1 0.016 13.7 0.0 1.6 2 1 0 2 2 2 1 Glycosyl hydrolase family 1 AP_endonuc_2 PF01261.24 gi|305662750|ref|YP_003859038.1| - 0.014 14.8 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Glyco_hydro_42M PF08532.10 gi|305662750|ref|YP_003859038.1| - 0.16 11.4 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 Beta-galactosidase trimerisation domain ADH_N PF08240.12 gi|305662751|ref|YP_003859039.1| - 3.5e-36 123.4 0.7 5.1e-36 122.9 0.7 1.2 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|305662751|ref|YP_003859039.1| - 3.7e-27 94.8 0.0 5.7e-27 94.3 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|305662751|ref|YP_003859039.1| - 1.2e-09 38.0 0.0 1.7e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Pyr_redox PF00070.27 gi|305662751|ref|YP_003859039.1| - 0.0034 17.9 0.2 0.44 11.1 0.0 3.5 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|305662751|ref|YP_003859039.1| - 0.0058 16.0 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|305662751|ref|YP_003859039.1| - 0.011 16.0 0.3 0.028 14.7 0.0 2.0 2 1 0 2 2 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|305662751|ref|YP_003859039.1| - 0.011 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 gi|305662751|ref|YP_003859039.1| - 0.014 15.0 0.0 0.039 13.5 0.0 1.8 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Gp_dh_N PF00044.24 gi|305662751|ref|YP_003859039.1| - 0.014 15.7 0.2 2.3 8.6 0.0 2.7 1 1 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NADH_4Fe-4S PF10589.9 gi|305662751|ref|YP_003859039.1| - 0.025 14.6 1.3 0.062 13.4 1.3 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Pyr_redox_2 PF07992.14 gi|305662751|ref|YP_003859039.1| - 0.11 11.7 0.0 0.44 9.7 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|305662751|ref|YP_003859039.1| - 0.12 11.7 0.1 0.21 10.9 0.1 1.4 1 0 0 1 1 1 0 ThiF family ADH_zinc_N_2 PF13602.6 gi|305662751|ref|YP_003859039.1| - 0.13 13.4 0.0 0.2 12.7 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Fe-ADH PF00465.19 gi|305662752|ref|YP_003859040.1| - 5.1e-48 163.7 0.0 6.6e-48 163.4 0.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|305662752|ref|YP_003859040.1| - 4.9e-25 88.7 0.0 7.5e-25 88.1 0.0 1.3 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|305662752|ref|YP_003859040.1| - 0.006 15.8 0.7 0.085 12.0 0.7 2.5 1 1 0 1 1 1 1 3-dehydroquinate synthase Lactamase_B_2 PF12706.7 gi|305662753|ref|YP_003859041.1| - 0.00018 21.1 0.0 0.00031 20.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|305662753|ref|YP_003859041.1| - 0.00093 19.1 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DHH PF01368.20 gi|305662753|ref|YP_003859041.1| - 0.12 12.6 0.2 2.8 8.3 0.0 2.3 2 0 0 2 2 2 0 DHH family Lactamase_B PF00753.27 gi|305662753|ref|YP_003859041.1| - 0.18 11.8 3.5 1.6 8.7 2.9 2.1 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Sua5_yciO_yrdC PF01300.18 gi|305662754|ref|YP_003859042.1| - 8.7e-55 185.0 0.0 2e-53 180.5 0.0 2.0 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.13 gi|305662754|ref|YP_003859042.1| - 3.3e-29 102.2 0.0 4.5e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding NTP_transf_2 PF01909.23 gi|305662755|ref|YP_003859043.1| - 0.00038 20.7 0.1 0.0015 18.8 0.0 2.1 1 1 1 2 2 2 1 Nucleotidyltransferase domain DUF1240 PF06836.12 gi|305662757|ref|YP_003859045.1| - 0.066 13.8 1.0 0.066 13.8 1.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1240) Nitroreductase PF00881.24 gi|305662758|ref|YP_003859046.1| - 1.1e-29 103.7 0.0 1.3e-29 103.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|305662758|ref|YP_003859046.1| - 6e-05 22.7 0.0 0.2 11.2 0.0 2.3 2 0 0 2 2 2 2 Putative TM nitroreductase Alba PF01918.21 gi|305662759|ref|YP_003859047.1| - 6.9e-06 25.8 0.4 1.1e-05 25.1 0.4 1.3 1 0 0 1 1 1 1 Alba DUF998 PF06197.13 gi|305662760|ref|YP_003859048.1| - 4.5e-08 32.9 17.0 5.4e-08 32.6 17.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) ParBc PF02195.18 gi|305662761|ref|YP_003859049.1| - 5.1e-07 29.9 0.0 8.7e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|305662761|ref|YP_003859049.1| - 0.025 13.5 0.0 1.2 7.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1015) Na_H_Exchanger PF00999.21 gi|305662762|ref|YP_003859050.1| - 6.1e-43 147.1 55.2 7.3e-43 146.8 55.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Mrr_cat PF04471.12 gi|305662763|ref|YP_003859051.1| - 0.00016 21.7 0.0 0.00032 20.7 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease CobD_Cbib PF03186.13 gi|305662764|ref|YP_003859052.1| - 6.5e-74 248.6 5.5 8.3e-74 248.3 5.5 1.2 1 0 0 1 1 1 1 CobD/Cbib protein MscL PF01741.18 gi|305662764|ref|YP_003859052.1| - 0.08 13.2 0.9 0.18 12.1 0.0 2.0 2 0 0 2 2 2 0 Large-conductance mechanosensitive channel, MscL CobS PF02654.15 gi|305662765|ref|YP_003859053.1| - 1.7e-37 129.6 11.1 2e-37 129.4 11.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase RseC_MucC PF04246.12 gi|305662765|ref|YP_003859053.1| - 0.059 13.3 0.5 0.059 13.3 0.5 2.5 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Aminotran_1_2 PF00155.21 gi|305662766|ref|YP_003859054.1| - 6.4e-39 134.1 0.0 7.1e-39 134.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|305662766|ref|YP_003859054.1| - 0.0083 15.1 0.0 0.13 11.2 0.0 2.5 2 1 0 2 2 2 1 Aminotransferase class-V PORR PF11955.8 gi|305662766|ref|YP_003859054.1| - 0.11 11.4 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Plant organelle RNA recognition domain ApoLp-III PF07464.11 gi|305662766|ref|YP_003859054.1| - 0.28 11.3 0.0 0.47 10.5 0.0 1.2 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) NTP_transf_3 PF12804.7 gi|305662767|ref|YP_003859055.1| - 4.4e-09 36.9 0.0 7.3e-09 36.2 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|305662767|ref|YP_003859055.1| - 0.00039 20.2 0.0 0.031 14.0 0.0 2.3 2 1 0 2 2 2 2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|305662767|ref|YP_003859055.1| - 0.13 11.8 0.3 0.62 9.6 0.3 1.9 1 1 0 1 1 1 0 Nucleotidyl transferase CbiZ PF01955.18 gi|305662768|ref|YP_003859056.1| - 8.2e-39 133.7 0.1 1e-38 133.4 0.1 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase PgpA PF04608.13 gi|305662768|ref|YP_003859056.1| - 0.0022 18.0 0.2 0.024 14.7 0.2 2.3 1 1 0 1 1 1 1 Phosphatidylglycerophosphatase A Microcin PF03526.13 gi|305662768|ref|YP_003859056.1| - 0.0072 16.1 0.3 0.031 14.1 0.2 2.1 2 0 0 2 2 2 1 Colicin E1 (microcin) immunity protein Mem_trans PF03547.18 gi|305662768|ref|YP_003859056.1| - 0.041 12.3 0.2 0.049 12.0 0.2 1.3 1 0 0 1 1 1 0 Membrane transport protein DBI_PRT PF02277.17 gi|305662769|ref|YP_003859057.1| - 0.00025 20.4 0.0 0.00035 19.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase Ifi-6-16 PF06140.13 gi|305662769|ref|YP_003859057.1| - 0.45 10.4 4.2 0.16 11.9 0.8 2.0 2 0 0 2 2 2 0 Interferon-induced 6-16 family Diphthami_syn_2 PF01902.17 gi|305662770|ref|YP_003859058.1| - 3.1e-23 82.4 0.1 5.9e-23 81.5 0.1 1.4 1 1 0 1 1 1 1 Diphthamide synthase DUF460 PF04312.13 gi|305662770|ref|YP_003859058.1| - 0.037 13.7 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF460) Asn_synthase PF00733.21 gi|305662771|ref|YP_003859059.1| - 2.1e-16 60.5 0.0 1.5e-11 44.6 0.0 2.0 1 1 1 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|305662771|ref|YP_003859059.1| - 0.00019 20.6 0.0 0.00028 20.1 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ParcG PF10274.9 gi|305662771|ref|YP_003859059.1| - 0.038 14.1 0.1 0.053 13.6 0.1 1.2 1 0 0 1 1 1 0 Parkin co-regulated protein DASH_Dam1 PF08653.10 gi|305662772|ref|YP_003859060.1| - 0.0071 16.1 0.1 0.014 15.2 0.1 1.5 1 0 0 1 1 1 1 DASH complex subunit Dam1 Baculo_PEP_C PF04513.12 gi|305662772|ref|YP_003859060.1| - 0.057 13.5 0.0 0.12 12.4 0.0 1.6 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Importin_rep_6 PF18829.1 gi|305662772|ref|YP_003859060.1| - 0.09 12.9 0.2 0.19 11.9 0.1 1.6 1 1 0 1 1 1 0 Importin repeat 6 SNARE_assoc PF09335.11 gi|305662772|ref|YP_003859060.1| - 0.1 13.1 0.1 0.17 12.4 0.1 1.5 1 0 0 1 1 1 0 SNARE associated Golgi protein DUF5377 PF17347.2 gi|305662772|ref|YP_003859060.1| - 0.13 12.7 1.4 1.2 9.5 0.1 2.3 2 1 0 2 2 2 0 Family of unknown function (DUF5377) Vpu PF00558.19 gi|305662772|ref|YP_003859060.1| - 0.76 9.6 4.5 0.19 11.5 0.3 2.2 3 0 0 3 3 3 0 Vpu protein Lactamase_B_3 PF13483.6 gi|305662773|ref|YP_003859061.1| - 6.8e-26 91.1 0.0 9.3e-26 90.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|305662773|ref|YP_003859061.1| - 2.3e-24 86.0 0.1 2.9e-24 85.7 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|305662773|ref|YP_003859061.1| - 4.8e-07 30.0 2.0 6.1e-07 29.6 2.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.24 gi|305662774|ref|YP_003859062.1| - 3e-37 128.4 0.0 3.7e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF1512 PF07431.12 gi|305662775|ref|YP_003859063.1| - 2e-136 454.7 3.9 2.3e-136 454.5 3.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) KH_2 PF07650.17 gi|305662775|ref|YP_003859063.1| - 0.0081 16.0 0.4 0.0081 16.0 0.4 2.3 3 0 0 3 3 3 1 KH domain ATG27 PF09451.10 gi|305662776|ref|YP_003859064.1| - 0.027 14.3 0.1 0.031 14.1 0.1 1.3 1 0 0 1 1 1 0 Autophagy-related protein 27 zf-C4_Topoisom PF01396.19 gi|305662776|ref|YP_003859064.1| - 0.036 13.8 0.8 0.069 12.9 0.3 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger ASFV_J13L PF05568.11 gi|305662776|ref|YP_003859064.1| - 0.056 13.2 0.5 0.095 12.4 0.5 1.3 1 0 0 1 1 1 0 African swine fever virus J13L protein Baculo_LEF5_C PF11792.8 gi|305662776|ref|YP_003859064.1| - 0.1 12.3 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Baculoviridae late expression factor 5 C-terminal domain zf-TFIIB PF13453.6 gi|305662776|ref|YP_003859064.1| - 0.12 11.8 0.1 0.18 11.1 0.1 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger YdjO PF14169.6 gi|305662776|ref|YP_003859064.1| - 0.12 12.1 0.4 0.4 10.4 0.4 1.9 1 1 0 1 1 1 0 Cold-inducible protein YdjO Med5 PF08689.10 gi|305662776|ref|YP_003859064.1| - 0.17 9.7 0.1 0.2 9.4 0.1 1.0 1 0 0 1 1 1 0 Mediator complex subunit Med5 RIFIN PF02009.16 gi|305662776|ref|YP_003859064.1| - 0.19 11.6 5.0 0.2 11.5 1.5 2.0 2 0 0 2 2 2 0 Rifin Syndecan PF01034.20 gi|305662776|ref|YP_003859064.1| - 1.9 8.5 6.7 4.1 7.4 6.7 1.6 1 1 0 1 1 1 0 Syndecan domain Thioredoxin_8 PF13905.6 gi|305662778|ref|YP_003859066.1| - 0.033 14.5 0.1 0.33 11.3 0.1 2.1 1 1 0 1 1 1 0 Thioredoxin-like HTH_AsnC-type PF13404.6 gi|305662779|ref|YP_003859067.1| - 4.9e-15 55.1 0.8 7.8e-15 54.4 0.8 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|305662779|ref|YP_003859067.1| - 2e-11 43.2 1.9 3.1e-11 42.6 0.3 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|305662779|ref|YP_003859067.1| - 5.7e-10 39.0 0.0 1e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|305662779|ref|YP_003859067.1| - 1e-05 25.4 0.6 0.00013 21.9 0.3 2.4 2 0 0 2 2 2 1 HTH domain HTH_10 PF04967.12 gi|305662779|ref|YP_003859067.1| - 0.0007 19.4 0.2 0.0014 18.4 0.2 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Mga PF08280.11 gi|305662779|ref|YP_003859067.1| - 0.00074 19.5 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.22 gi|305662779|ref|YP_003859067.1| - 0.00076 19.4 0.2 0.0017 18.3 0.2 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|305662779|ref|YP_003859067.1| - 0.00079 19.3 0.2 0.0017 18.2 0.2 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|305662779|ref|YP_003859067.1| - 0.0011 18.9 0.1 0.0028 17.5 0.1 1.6 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.12 gi|305662779|ref|YP_003859067.1| - 0.0045 16.6 0.1 0.0085 15.7 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|305662779|ref|YP_003859067.1| - 0.029 14.4 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|305662779|ref|YP_003859067.1| - 0.058 13.6 0.1 0.13 12.4 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|305662779|ref|YP_003859067.1| - 0.083 12.7 0.3 0.19 11.6 0.3 1.7 1 1 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 gi|305662779|ref|YP_003859067.1| - 0.088 13.0 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_Tnp_ISL3 PF13542.6 gi|305662779|ref|YP_003859067.1| - 0.14 11.6 0.1 0.28 10.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_1 PF00126.27 gi|305662779|ref|YP_003859067.1| - 0.19 11.7 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Thioredoxin_3 PF13192.6 gi|305662780|ref|YP_003859068.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain NifU PF01106.17 gi|305662780|ref|YP_003859068.1| - 0.15 12.2 0.1 0.38 10.9 0.0 1.6 2 0 0 2 2 2 0 NifU-like domain PDT PF00800.18 gi|305662781|ref|YP_003859069.1| - 4.1e-62 209.2 0.0 6.7e-62 208.6 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|305662781|ref|YP_003859069.1| - 1.5e-06 27.8 0.0 1.1e-05 25.1 0.0 2.3 2 0 0 2 2 2 1 ACT domain CM_2 PF01817.21 gi|305662781|ref|YP_003859069.1| - 0.14 12.5 1.3 0.48 10.8 0.4 2.4 3 0 0 3 3 3 0 Chorismate mutase type II Flavin_Reduct PF01613.18 gi|305662782|ref|YP_003859070.1| - 4.8e-30 104.6 0.0 5.4e-30 104.5 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF2139 PF09910.9 gi|305662783|ref|YP_003859071.1| - 1.3e-166 553.9 0.1 1.7e-166 553.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) AP_endonuc_2 PF01261.24 gi|305662784|ref|YP_003859072.1| - 2.3e-14 53.3 0.0 3.8e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PfkB PF00294.24 gi|305662785|ref|YP_003859073.1| - 5.5e-56 190.1 0.0 6.5e-56 189.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF236 PF03057.14 gi|305662785|ref|YP_003859073.1| - 0.1 12.6 0.1 7 6.7 0.0 2.4 2 0 0 2 2 2 0 DUF236 repeat PHP PF02811.19 gi|305662786|ref|YP_003859074.1| - 0.00042 20.7 0.0 0.00064 20.1 0.0 1.4 1 0 0 1 1 1 1 PHP domain Glyco_hydro_106 PF17132.4 gi|305662789|ref|YP_003859077.1| - 7.4e-27 94.0 0.0 1.4e-23 83.1 0.0 2.7 2 1 0 2 2 2 2 alpha-L-rhamnosidase Glyco_hydro_2_N PF02837.18 gi|305662789|ref|YP_003859077.1| - 0.00017 21.5 0.1 0.00038 20.4 0.1 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain GATase1_like PF07090.11 gi|305662789|ref|YP_003859077.1| - 0.12 11.8 0.0 9.6 5.6 0.0 2.4 2 0 0 2 2 2 0 Putative glutamine amidotransferase Glyco_hydro_42M PF08532.10 gi|305662789|ref|YP_003859077.1| - 0.14 11.7 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 Beta-galactosidase trimerisation domain AP_endonuc_2 PF01261.24 gi|305662790|ref|YP_003859078.1| - 7.9e-30 103.9 0.0 1.7e-29 102.8 0.0 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel PhoU PF01895.19 gi|305662791|ref|YP_003859079.1| - 3.3e-20 72.3 10.4 1.1e-14 54.6 2.0 2.5 2 1 0 2 2 2 2 PhoU domain PhoU_div PF01865.16 gi|305662791|ref|YP_003859079.1| - 0.031 13.6 0.4 0.031 13.6 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF47 ABC_tran PF00005.27 gi|305662792|ref|YP_003859080.1| - 7.3e-32 110.8 0.0 9.3e-32 110.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305662792|ref|YP_003859080.1| - 2.2e-15 57.2 0.0 1.3e-08 35.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305662792|ref|YP_003859080.1| - 3.1e-08 33.3 0.0 5.2e-07 29.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|305662792|ref|YP_003859080.1| - 4.7e-06 26.6 0.0 0.063 13.0 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|305662792|ref|YP_003859080.1| - 5.5e-06 26.0 0.0 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|305662792|ref|YP_003859080.1| - 4.6e-05 23.7 0.0 0.00012 22.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|305662792|ref|YP_003859080.1| - 6.9e-05 23.4 0.0 0.00012 22.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|305662792|ref|YP_003859080.1| - 9.7e-05 21.3 0.1 0.01 14.7 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|305662792|ref|YP_003859080.1| - 0.0015 18.4 0.1 0.0092 15.9 0.1 2.1 1 1 1 2 2 2 1 RsgA GTPase AAA_18 PF13238.6 gi|305662792|ref|YP_003859080.1| - 0.0024 18.4 0.0 0.0054 17.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|305662792|ref|YP_003859080.1| - 0.0027 16.9 0.0 0.004 16.4 0.0 1.3 1 1 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.6 gi|305662792|ref|YP_003859080.1| - 0.0036 17.7 0.0 0.0061 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|305662792|ref|YP_003859080.1| - 0.0055 16.6 0.1 0.015 15.2 0.0 1.7 2 1 0 2 2 1 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|305662792|ref|YP_003859080.1| - 0.0067 16.2 0.0 0.028 14.1 0.0 1.8 2 1 0 2 2 2 1 AAA domain DUF3987 PF13148.6 gi|305662792|ref|YP_003859080.1| - 0.02 13.9 0.0 0.036 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Rad17 PF03215.15 gi|305662792|ref|YP_003859080.1| - 0.024 14.6 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_27 PF13514.6 gi|305662792|ref|YP_003859080.1| - 0.028 14.0 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|305662792|ref|YP_003859080.1| - 0.042 14.0 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|305662792|ref|YP_003859080.1| - 0.043 13.5 0.0 0.088 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|305662792|ref|YP_003859080.1| - 0.055 13.4 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_PrkA PF08298.11 gi|305662792|ref|YP_003859080.1| - 0.056 12.3 0.0 0.083 11.8 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain MMR_HSR1 PF01926.23 gi|305662792|ref|YP_003859080.1| - 0.063 13.4 0.1 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase T2SSE PF00437.20 gi|305662792|ref|YP_003859080.1| - 0.064 12.3 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|305662792|ref|YP_003859080.1| - 0.066 12.8 0.1 0.32 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|305662792|ref|YP_003859080.1| - 0.068 12.9 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase SbcCD_C PF13558.6 gi|305662792|ref|YP_003859080.1| - 0.069 13.4 0.0 1.2 9.4 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF3562 PF12085.8 gi|305662792|ref|YP_003859080.1| - 0.11 12.1 0.1 0.34 10.6 0.0 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF3562) AAA_28 PF13521.6 gi|305662792|ref|YP_003859080.1| - 0.13 12.5 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|305662792|ref|YP_003859080.1| - 0.13 11.8 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|305662792|ref|YP_003859080.1| - 0.14 12.1 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 NTPase PRK PF00485.18 gi|305662792|ref|YP_003859080.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.6 gi|305662792|ref|YP_003859080.1| - 0.16 12.0 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|305662794|ref|YP_003859082.1| - 6.1e-12 45.7 17.1 6.1e-12 45.7 17.1 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component HEV_ORF1 PF02444.16 gi|305662794|ref|YP_003859082.1| - 0.041 14.5 0.4 0.28 11.8 0.1 2.3 2 0 0 2 2 2 0 Hepatitis E virus ORF-2 (Putative capsid protein) UPF0242 PF06785.11 gi|305662794|ref|YP_003859082.1| - 0.59 10.2 2.1 0.93 9.6 2.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus PBP_like_2 PF12849.7 gi|305662795|ref|YP_003859083.1| - 2.5e-43 148.8 0.0 3.3e-43 148.4 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|305662795|ref|YP_003859083.1| - 4.2e-08 33.5 0.0 5.7e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|305662795|ref|YP_003859083.1| - 9.5e-07 28.1 0.0 3.5e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.20 gi|305662795|ref|YP_003859083.1| - 0.12 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain B3_4 PF03483.17 gi|305662796|ref|YP_003859084.1| - 7.4e-25 87.6 0.0 1.2e-24 86.9 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain LPD11 PF18824.1 gi|305662797|ref|YP_003859085.1| - 2.5e-05 24.2 1.6 0.00033 20.7 0.4 2.6 3 0 0 3 3 2 1 Large polyvalent protein-associated domain 11 ApoLp-III PF07464.11 gi|305662797|ref|YP_003859085.1| - 9.1e-05 22.6 2.1 0.049 13.7 0.8 3.4 2 1 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) 4HB_MCP_1 PF12729.7 gi|305662797|ref|YP_003859085.1| - 0.00011 21.8 4.8 0.00027 20.5 0.5 3.1 2 1 2 4 4 4 1 Four helix bundle sensory module for signal transduction RHH_8 PF17723.1 gi|305662797|ref|YP_003859085.1| - 0.0014 18.8 1.1 0.015 15.5 0.1 2.4 2 1 0 2 2 2 1 Ribbon-Helix-Helix transcriptional regulator family EzrA PF06160.12 gi|305662797|ref|YP_003859085.1| - 0.0044 15.3 5.0 0.0044 15.3 5.0 2.1 2 1 0 2 2 2 1 Septation ring formation regulator, EzrA Phasin_2 PF09361.10 gi|305662797|ref|YP_003859085.1| - 0.0049 17.1 0.0 7.3 6.9 0.0 3.3 4 0 0 4 4 3 1 Phasin protein LUC7 PF03194.15 gi|305662797|ref|YP_003859085.1| - 0.0058 16.3 3.9 0.0099 15.6 0.3 2.4 2 1 0 2 2 2 1 LUC7 N_terminus DUF148 PF02520.17 gi|305662797|ref|YP_003859085.1| - 0.017 15.2 4.0 0.31 11.2 0.6 3.5 3 1 0 3 3 3 0 Domain of unknown function DUF148 WXG100 PF06013.12 gi|305662797|ref|YP_003859085.1| - 0.039 14.2 0.6 6.2 7.1 0.0 3.7 2 1 2 4 4 4 0 Proteins of 100 residues with WXG Serine_rich PF08824.10 gi|305662797|ref|YP_003859085.1| - 0.057 13.4 0.8 0.19 11.7 0.2 2.1 2 0 0 2 2 2 0 Serine rich protein interaction domain IncF PF17626.2 gi|305662797|ref|YP_003859085.1| - 0.083 13.2 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 Inclusion membrane protein F BshC PF10079.9 gi|305662797|ref|YP_003859085.1| - 0.14 10.9 2.7 0.098 11.4 0.5 1.7 2 0 0 2 2 2 0 Bacillithiol biosynthesis BshC DUF948 PF06103.11 gi|305662797|ref|YP_003859085.1| - 0.14 12.4 0.2 49 4.3 0.1 3.3 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF4972 PF16342.5 gi|305662797|ref|YP_003859085.1| - 0.18 11.5 2.5 0.22 11.2 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4972) HisKA PF00512.25 gi|305662797|ref|YP_003859085.1| - 0.26 11.4 2.3 1.7 8.7 0.3 2.8 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF1664 PF07889.12 gi|305662797|ref|YP_003859085.1| - 0.3 11.1 4.8 3 7.9 0.5 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF1664) Latarcin PF10279.9 gi|305662797|ref|YP_003859085.1| - 0.34 11.3 15.3 0.061 13.7 2.5 3.6 1 1 1 2 2 2 0 Latarcin precursor Hormone_1 PF00103.20 gi|305662797|ref|YP_003859085.1| - 0.38 10.4 4.5 9.9 5.8 0.3 2.7 2 1 1 3 3 3 0 Somatotropin hormone family DUF4618 PF15397.6 gi|305662797|ref|YP_003859085.1| - 0.41 10.0 6.9 1.5 8.2 1.5 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) BLOC1_2 PF10046.9 gi|305662797|ref|YP_003859085.1| - 0.49 10.7 5.0 2.5 8.5 0.6 3.3 4 0 0 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|305662797|ref|YP_003859085.1| - 0.56 10.2 6.4 1.2 9.1 0.5 2.8 1 1 3 4 4 4 0 Laminin Domain II Fzo_mitofusin PF04799.13 gi|305662797|ref|YP_003859085.1| - 0.97 9.0 4.7 13 5.3 0.0 3.3 2 1 2 4 4 4 0 fzo-like conserved region DUF16 PF01519.16 gi|305662797|ref|YP_003859085.1| - 3.2 8.3 7.7 9.5 6.8 2.6 3.0 2 2 0 2 2 2 0 Protein of unknown function DUF16 Cation_efflux PF01545.21 gi|305662798|ref|YP_003859086.1| - 9e-23 81.0 15.1 1.1e-22 80.7 15.1 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|305662798|ref|YP_003859086.1| - 1.2e-08 34.9 0.0 2.4e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter MazG PF03819.17 gi|305662799|ref|YP_003859087.1| - 2.2e-11 43.8 0.1 2.8e-11 43.4 0.1 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|305662799|ref|YP_003859087.1| - 8.4e-07 29.2 0.1 1.1e-06 28.8 0.1 1.1 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|305662799|ref|YP_003859087.1| - 7e-06 26.4 0.1 8.4e-06 26.1 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase UxaE PF16257.5 gi|305662800|ref|YP_003859088.1| - 1e-13 50.8 0.1 1.4e-13 50.4 0.1 1.2 1 1 0 1 1 1 1 tagaturonate epimerase AP_endonuc_2 PF01261.24 gi|305662801|ref|YP_003859089.1| - 0.0009 18.7 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF4434 PF14488.6 gi|305662801|ref|YP_003859089.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) TAL_FSA PF00923.19 gi|305662802|ref|YP_003859090.1| - 3.2e-13 49.7 0.0 5.7e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase DUF2802 PF10975.8 gi|305662802|ref|YP_003859090.1| - 0.063 13.4 0.0 0.2 11.8 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) DUF4147 PF13660.6 gi|305662803|ref|YP_003859091.1| - 4.9e-72 242.2 0.0 6.4e-72 241.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|305662803|ref|YP_003859091.1| - 1.5e-35 121.7 0.0 2.5e-35 121.0 0.0 1.4 1 0 0 1 1 1 1 MOFRL family Glyco_hydro_4 PF02056.16 gi|305662804|ref|YP_003859092.1| - 2.4e-45 154.3 0.0 3.9e-45 153.6 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|305662804|ref|YP_003859092.1| - 4.3e-41 141.3 0.0 2.4e-40 138.9 0.0 2.0 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.23 gi|305662804|ref|YP_003859092.1| - 0.00079 19.5 0.0 0.25 11.4 0.0 2.6 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain Glyco_hydro_2_C PF02836.17 gi|305662805|ref|YP_003859093.1| - 1.7e-69 234.3 0.0 2.2e-69 233.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.18 gi|305662805|ref|YP_003859093.1| - 2.3e-20 73.2 1.2 7e-20 71.6 1.2 1.8 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 gi|305662805|ref|YP_003859093.1| - 4e-10 40.3 0.0 6.8e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.6 gi|305662805|ref|YP_003859093.1| - 0.00022 21.7 0.2 0.00042 20.9 0.2 1.4 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Glyco_hydro_cc PF11790.8 gi|305662805|ref|YP_003859093.1| - 0.00074 19.1 0.1 0.0012 18.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase catalytic core 2-Hacid_dh_C PF02826.19 gi|305662806|ref|YP_003859094.1| - 1e-71 240.0 0.0 1.4e-71 239.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|305662806|ref|YP_003859094.1| - 2.5e-35 121.1 0.0 2.9e-35 120.8 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|305662806|ref|YP_003859094.1| - 1.7e-07 31.5 0.1 4.1e-07 30.3 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|305662806|ref|YP_003859094.1| - 0.00027 20.5 0.0 0.00048 19.7 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|305662806|ref|YP_003859094.1| - 0.0025 17.9 0.0 0.023 14.8 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XdhC_C PF13478.6 gi|305662806|ref|YP_003859094.1| - 0.028 14.9 0.0 0.06 13.8 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|305662806|ref|YP_003859094.1| - 0.044 13.7 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|305662806|ref|YP_003859094.1| - 0.077 13.6 0.0 0.16 12.6 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|305662806|ref|YP_003859094.1| - 0.11 13.3 0.0 0.34 11.7 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|305662807|ref|YP_003859095.1| - 1.1e-68 230.1 0.0 1.6e-68 229.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|305662807|ref|YP_003859095.1| - 8.9e-29 99.9 0.0 1e-28 99.6 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|305662807|ref|YP_003859095.1| - 1.6e-06 28.4 0.0 2.9e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|305662807|ref|YP_003859095.1| - 0.0042 17.6 0.0 0.013 16.1 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|305662807|ref|YP_003859095.1| - 0.023 14.6 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|305662807|ref|YP_003859095.1| - 0.095 13.0 0.4 0.97 9.7 0.1 2.4 2 0 0 2 2 2 0 TrkA-N domain XdhC_C PF13478.6 gi|305662807|ref|YP_003859095.1| - 0.14 12.7 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain HpcH_HpaI PF03328.14 gi|305662808|ref|YP_003859096.1| - 7.2e-32 110.3 0.0 8.3e-32 110.1 0.0 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family DUF2156 PF09924.9 gi|305662808|ref|YP_003859096.1| - 0.14 11.1 0.0 0.21 10.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) B12-binding PF02310.19 gi|305662809|ref|YP_003859097.1| - 4.6e-31 107.4 0.5 8.8e-31 106.5 0.5 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|305662809|ref|YP_003859097.1| - 2.1e-13 50.5 0.5 7.7e-13 48.7 0.0 2.2 3 0 0 3 3 3 1 B12 binding domain Peripla_BP_6 PF13458.6 gi|305662809|ref|YP_003859097.1| - 0.0013 18.5 0.0 0.0017 18.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein AF2331-like PF14556.6 gi|305662809|ref|YP_003859097.1| - 0.074 13.6 0.6 2.8 8.6 0.1 2.4 1 1 1 2 2 2 0 AF2331-like DUF433 PF04255.14 gi|305662809|ref|YP_003859097.1| - 0.15 11.9 0.3 2.3 8.2 0.0 2.9 3 2 1 4 4 4 0 Protein of unknown function (DUF433) Sm_multidrug_ex PF06695.11 gi|305662810|ref|YP_003859098.1| - 2.8e-32 111.9 2.8 4.1e-32 111.3 2.8 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein UPF0242 PF06785.11 gi|305662810|ref|YP_003859098.1| - 0.064 13.4 1.2 0.084 13.0 1.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Ins_allergen_rp PF06757.13 gi|305662811|ref|YP_003859099.1| - 0.081 12.9 0.4 0.25 11.3 0.1 1.9 3 0 0 3 3 3 0 Insect allergen related repeat, nitrile-specifier detoxification Ykof PF07615.11 gi|305662811|ref|YP_003859099.1| - 0.12 12.8 0.1 16 6.1 0.0 2.7 2 0 0 2 2 2 0 YKOF-related Family Aminotran_1_2 PF00155.21 gi|305662812|ref|YP_003859100.1| - 4.1e-71 240.1 0.0 4.7e-71 239.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|305662812|ref|YP_003859100.1| - 6.5e-09 35.2 0.0 1.3e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|305662812|ref|YP_003859100.1| - 5.3e-07 29.3 0.0 1e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|305662812|ref|YP_003859100.1| - 1.6e-06 26.9 0.0 2.6e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|305662812|ref|YP_003859100.1| - 0.00028 20.3 0.0 0.00041 19.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase NTP_transf_3 PF12804.7 gi|305662813|ref|YP_003859101.1| - 7e-25 88.2 0.0 8.6e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|305662813|ref|YP_003859101.1| - 8.6e-05 22.6 0.0 9.8e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|305662813|ref|YP_003859101.1| - 0.00057 19.7 0.0 0.00078 19.2 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|305662813|ref|YP_003859101.1| - 0.0021 17.7 0.0 0.0032 17.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.16 gi|305662813|ref|YP_003859101.1| - 0.0053 16.0 0.0 0.0081 15.4 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like GXGXG PF01493.19 gi|305662814|ref|YP_003859102.1| - 7.6e-11 42.0 27.6 5.7e-07 29.3 4.0 2.9 2 1 1 3 3 3 2 GXGXG motif Molybdopterin PF00384.22 gi|305662815|ref|YP_003859103.1| - 2.4e-20 72.9 0.0 5e-20 71.9 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|305662815|ref|YP_003859103.1| - 8.3e-11 41.9 0.0 1.6e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TPP_enzyme_M PF00205.22 gi|305662815|ref|YP_003859103.1| - 3.5e-05 23.5 0.4 0.036 13.8 0.2 3.0 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain zf-C4_ClpX PF06689.13 gi|305662815|ref|YP_003859103.1| - 0.88 9.5 3.8 15 5.5 0.0 2.6 2 0 0 2 2 2 0 ClpX C4-type zinc finger UDG PF03167.19 gi|305662816|ref|YP_003859104.1| - 0.066 13.2 0.0 0.074 13.0 0.0 1.2 1 0 0 1 1 1 0 Uracil DNA glycosylase superfamily Acetyltransf_2 PF00797.17 gi|305662816|ref|YP_003859104.1| - 0.17 11.7 0.0 0.27 11.0 0.0 1.4 2 0 0 2 2 2 0 N-acetyltransferase NTP_transferase PF00483.23 gi|305662817|ref|YP_003859105.1| - 2.8e-28 99.2 0.0 3.1e-28 99.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|305662817|ref|YP_003859105.1| - 8.8e-13 48.9 0.0 1.1e-12 48.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF3928 PF13065.6 gi|305662817|ref|YP_003859105.1| - 0.13 13.0 0.0 0.23 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3928) Fe-ADH PF00465.19 gi|305662818|ref|YP_003859106.1| - 3.5e-86 289.3 0.0 4e-86 289.1 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|305662818|ref|YP_003859106.1| - 5.4e-12 45.9 0.8 6.7e-08 32.5 0.1 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase PG_binding_1 PF01471.18 gi|305662818|ref|YP_003859106.1| - 0.14 12.4 0.1 0.62 10.3 0.0 2.1 1 1 1 2 2 2 0 Putative peptidoglycan binding domain DNA_binding_1 PF01035.20 gi|305662821|ref|YP_003859109.1| - 2.3e-22 78.9 0.0 2.9e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF5442 PF17514.2 gi|305662821|ref|YP_003859109.1| - 0.066 13.4 0.0 0.084 13.1 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5442) HTH_23 PF13384.6 gi|305662821|ref|YP_003859109.1| - 0.16 11.8 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Peptidase_M29 PF02073.15 gi|305662822|ref|YP_003859110.1| - 3.2e-102 342.3 0.0 3.6e-102 342.2 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Hist_deacetyl PF00850.19 gi|305662823|ref|YP_003859111.1| - 2.9e-69 233.9 0.0 4.1e-69 233.4 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain Polysacc_synt PF01943.17 gi|305662824|ref|YP_003859112.1| - 2.8e-22 79.4 28.5 2.8e-22 79.4 28.5 3.0 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|305662824|ref|YP_003859112.1| - 4.7e-16 58.8 19.9 4.7e-16 58.8 19.9 2.3 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|305662824|ref|YP_003859112.1| - 1.8e-10 41.1 15.1 1.8e-10 41.1 15.1 3.5 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|305662824|ref|YP_003859112.1| - 2.5e-07 30.5 26.2 9.5e-06 25.3 11.8 3.7 2 2 2 4 4 4 2 MatE Romo1 PF10247.9 gi|305662824|ref|YP_003859112.1| - 0.13 12.7 4.9 3.3 8.1 0.0 3.9 4 0 0 4 4 4 0 Reactive mitochondrial oxygen species modulator 1 MoCF_biosynth PF00994.24 gi|305662825|ref|YP_003859113.1| - 2e-21 76.2 0.0 2.6e-21 75.8 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain GATase PF00117.28 gi|305662825|ref|YP_003859113.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Rhomboid PF01694.22 gi|305662826|ref|YP_003859114.1| - 1e-35 122.9 19.2 1e-35 122.9 19.2 2.3 2 0 0 2 2 2 1 Rhomboid family DUF89 PF01937.19 gi|305662827|ref|YP_003859115.1| - 5.2e-35 121.0 0.9 6.2e-35 120.8 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF89 Hemocyanin_M PF00372.19 gi|305662827|ref|YP_003859115.1| - 0.13 11.4 0.4 0.39 9.9 0.1 1.7 2 0 0 2 2 2 0 Hemocyanin, copper containing domain DUF3895 PF13034.6 gi|305662827|ref|YP_003859115.1| - 0.19 11.7 1.4 7.7 6.6 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3895) MatE PF01554.18 gi|305662828|ref|YP_003859116.1| - 1.3e-43 148.5 35.2 3.7e-23 81.9 8.2 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|305662828|ref|YP_003859116.1| - 3.9e-10 39.9 50.4 2e-08 34.4 18.4 4.9 2 1 3 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|305662828|ref|YP_003859116.1| - 1.7e-08 33.5 4.0 1.7e-08 33.5 4.0 3.4 2 2 2 4 4 4 2 Lipid II flippase MurJ MoCF_biosynth PF00994.24 gi|305662829|ref|YP_003859117.1| - 1.8e-28 99.0 0.0 2.7e-28 98.5 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain CinA_KH PF18146.1 gi|305662829|ref|YP_003859117.1| - 0.0042 17.2 0.0 0.021 15.0 0.0 2.2 2 1 0 2 2 2 1 Damage-inducible protein CinA KH domain MtrH PF02007.18 gi|305662830|ref|YP_003859118.1| - 1.7e-78 263.8 0.0 2.1e-78 263.5 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit Pterin_bind PF00809.22 gi|305662830|ref|YP_003859118.1| - 0.17 11.5 0.0 0.36 10.5 0.0 1.6 1 1 0 1 1 1 0 Pterin binding enzyme NUDIX PF00293.28 gi|305662832|ref|YP_003859120.1| - 5.5e-17 62.0 0.0 6.7e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Amidohydro_1 PF01979.20 gi|305662833|ref|YP_003859121.1| - 5.8e-16 58.7 0.3 1e-15 57.9 0.3 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|305662833|ref|YP_003859121.1| - 3.4e-06 26.8 0.2 0.01 15.4 0.1 2.4 2 0 0 2 2 2 2 Amidohydrolase family Glyco_hydro_20 PF00728.22 gi|305662835|ref|YP_003859123.1| - 7.5e-17 61.7 0.0 5.3e-16 59.0 0.0 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain Zn-ribbon_8 PF09723.10 gi|305662836|ref|YP_003859124.1| - 0.00086 19.4 0.3 0.0019 18.3 0.3 1.6 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|305662836|ref|YP_003859124.1| - 0.00094 18.5 1.0 0.0026 17.1 1.0 1.7 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|305662836|ref|YP_003859124.1| - 0.012 15.6 0.2 0.023 14.7 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_SprT PF17283.2 gi|305662836|ref|YP_003859124.1| - 0.028 14.3 1.9 0.08 12.9 1.9 1.8 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Lar_restr_allev PF14354.6 gi|305662836|ref|YP_003859124.1| - 0.098 13.1 1.1 0.098 13.0 0.1 1.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar SF3A3 PF16837.5 gi|305662836|ref|YP_003859124.1| - 0.38 11.3 3.0 0.72 10.4 1.0 2.4 2 1 0 2 2 2 0 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 zf_UBZ PF18439.1 gi|305662836|ref|YP_003859124.1| - 0.64 9.7 2.6 0.45 10.2 0.2 2.0 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-P11 PF03854.14 gi|305662836|ref|YP_003859124.1| - 1.2 8.9 5.5 0.41 10.4 2.2 1.9 1 1 1 2 2 2 0 P-11 zinc finger RE_ScaI PF09569.10 gi|305662837|ref|YP_003859125.1| - 0.086 12.6 1.8 0.11 12.2 0.3 1.8 1 1 1 2 2 2 0 ScaI restriction endonuclease TFIIS_C PF01096.18 gi|305662838|ref|YP_003859126.1| - 4e-22 77.8 12.5 5.9e-21 74.0 4.4 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.12 gi|305662838|ref|YP_003859126.1| - 3.4e-09 36.5 0.9 1.9e-05 24.5 0.0 3.0 2 2 0 2 2 2 2 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 gi|305662838|ref|YP_003859126.1| - 6.7e-08 31.9 7.0 0.0014 18.1 0.4 2.7 2 1 0 2 2 2 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|305662838|ref|YP_003859126.1| - 1.4e-07 31.4 15.7 0.00075 19.4 4.1 2.4 2 1 0 2 2 2 2 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|305662838|ref|YP_003859126.1| - 4e-07 29.8 9.9 5.7e-06 26.1 3.1 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|305662838|ref|YP_003859126.1| - 1.8e-06 28.0 6.3 0.9 9.7 0.1 4.3 4 0 0 4 4 4 2 Zinc ribbon domain DZR PF12773.7 gi|305662838|ref|YP_003859126.1| - 2.8e-06 27.2 8.7 0.0035 17.3 0.6 3.0 2 1 0 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|305662838|ref|YP_003859126.1| - 5e-06 26.1 15.6 0.49 10.2 0.3 4.3 4 0 0 4 4 4 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|305662838|ref|YP_003859126.1| - 0.00011 21.5 13.9 0.42 10.1 0.4 4.2 4 0 0 4 4 4 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|305662838|ref|YP_003859126.1| - 0.00062 19.6 10.4 0.06 13.3 1.2 2.7 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|305662838|ref|YP_003859126.1| - 0.0023 17.5 8.1 0.56 9.9 1.4 3.3 3 0 0 3 3 3 1 DNA directed RNA polymerase, 7 kDa subunit Terminase_GpA PF05876.12 gi|305662838|ref|YP_003859126.1| - 0.0028 16.3 4.3 0.0028 16.3 4.3 1.9 1 1 0 1 1 1 1 Phage terminase large subunit (GpA) HypA PF01155.19 gi|305662838|ref|YP_003859126.1| - 0.0038 17.2 7.5 0.56 10.2 7.5 2.7 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|305662838|ref|YP_003859126.1| - 0.0051 16.4 9.8 7.5 6.2 0.1 4.2 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 gi|305662838|ref|YP_003859126.1| - 0.0078 16.1 1.1 0.0078 16.1 1.1 2.6 2 1 0 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Rpr2 PF04032.16 gi|305662838|ref|YP_003859126.1| - 0.0085 16.4 7.5 0.21 11.9 5.4 2.9 1 1 1 2 2 2 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc-ribbons_6 PF07191.12 gi|305662838|ref|YP_003859126.1| - 0.012 15.6 7.4 0.24 11.4 0.4 2.6 2 1 0 2 2 2 0 zinc-ribbons UPF0547 PF10571.9 gi|305662838|ref|YP_003859126.1| - 0.012 15.7 15.2 0.4 10.8 0.6 4.1 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 Desulfoferrod_N PF06397.12 gi|305662838|ref|YP_003859126.1| - 0.013 15.1 5.3 0.44 10.2 0.2 3.0 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain IBR PF01485.21 gi|305662838|ref|YP_003859126.1| - 0.014 15.6 9.6 0.12 12.6 1.0 2.9 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain MCM_OB PF17207.3 gi|305662838|ref|YP_003859126.1| - 0.014 15.2 4.2 0.018 14.9 0.4 2.2 1 1 1 2 2 2 0 MCM OB domain zf-NADH-PPase PF09297.11 gi|305662838|ref|YP_003859126.1| - 0.017 14.8 13.6 5.2 6.8 0.0 4.1 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L37e PF01907.19 gi|305662838|ref|YP_003859126.1| - 0.019 15.1 7.4 1.1 9.5 0.0 3.1 3 0 0 3 3 3 0 Ribosomal protein L37e zf-3CxxC_2 PF17180.4 gi|305662838|ref|YP_003859126.1| - 0.021 15.5 7.7 6.2 7.6 0.2 3.3 3 0 0 3 3 3 0 Zinc-binding domain Lar_restr_allev PF14354.6 gi|305662838|ref|YP_003859126.1| - 0.025 14.9 9.5 0.7 10.3 4.0 2.9 2 2 0 2 2 2 0 Restriction alleviation protein Lar Zn_ribbon_recom PF13408.6 gi|305662838|ref|YP_003859126.1| - 0.026 15.1 11.1 0.16 12.5 0.8 3.3 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain zf-ACC PF17848.1 gi|305662838|ref|YP_003859126.1| - 0.027 14.6 11.2 1.2 9.2 0.1 4.0 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain DpnI PF06044.12 gi|305662838|ref|YP_003859126.1| - 0.028 14.1 2.7 0.72 9.5 0.2 2.3 2 1 0 2 2 2 0 Dam-replacing family DUF1451 PF07295.11 gi|305662838|ref|YP_003859126.1| - 0.03 14.4 8.5 0.099 12.7 0.3 2.8 2 1 0 2 2 2 0 Zinc-ribbon containing domain Rubredoxin_2 PF18073.1 gi|305662838|ref|YP_003859126.1| - 0.035 13.8 17.2 0.35 10.6 0.9 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain DUF35_N PF12172.8 gi|305662838|ref|YP_003859126.1| - 0.041 13.8 14.1 7.9 6.5 1.2 4.6 4 1 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Cys_rich_KTR PF14205.6 gi|305662838|ref|YP_003859126.1| - 0.042 13.7 7.3 0.85 9.5 0.2 3.6 4 0 0 4 4 3 0 Cysteine-rich KTR Ribosomal_S27e PF01667.17 gi|305662838|ref|YP_003859126.1| - 0.051 13.3 7.2 0.97 9.2 0.2 3.1 2 1 0 2 2 2 0 Ribosomal protein S27 zinc_ribbon_10 PF10058.9 gi|305662838|ref|YP_003859126.1| - 0.056 13.2 11.6 0.83 9.4 0.1 3.7 3 1 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-RING_7 PF02591.15 gi|305662838|ref|YP_003859126.1| - 0.063 13.5 6.1 11 6.3 0.0 4.1 4 0 0 4 4 4 0 C4-type zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|305662838|ref|YP_003859126.1| - 0.069 13.1 17.3 7.2 6.6 0.0 3.8 3 1 0 3 3 3 0 SprT-like zinc ribbon domain Ogr_Delta PF04606.12 gi|305662838|ref|YP_003859126.1| - 0.082 12.9 12.6 8.3 6.5 0.1 4.1 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger IPT PF01745.16 gi|305662838|ref|YP_003859126.1| - 0.11 11.9 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Isopentenyl transferase DUF2387 PF09526.10 gi|305662838|ref|YP_003859126.1| - 0.11 12.6 6.2 3.3 7.9 0.3 2.3 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Rubredoxin PF00301.20 gi|305662838|ref|YP_003859126.1| - 0.14 12.2 10.5 9.8 6.3 0.1 4.0 4 0 0 4 4 4 0 Rubredoxin zf-tcix PF14952.6 gi|305662838|ref|YP_003859126.1| - 0.2 11.3 15.1 3.3 7.4 0.1 4.0 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding HscB_4_cys PF18256.1 gi|305662838|ref|YP_003859126.1| - 0.2 11.5 0.2 0.2 11.5 0.2 3.9 4 0 0 4 4 4 0 Co-chaperone HscB tetracysteine metal binding motif GFA PF04828.14 gi|305662838|ref|YP_003859126.1| - 0.23 11.8 10.7 32 5.0 0.1 4.0 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme eIF-5_eIF-2B PF01873.17 gi|305662838|ref|YP_003859126.1| - 0.24 11.3 4.7 3 7.8 0.2 2.4 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zinc_ribbon_4 PF13717.6 gi|305662838|ref|YP_003859126.1| - 0.29 11.1 21.0 0.39 10.7 0.7 4.2 3 2 0 3 3 3 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|305662838|ref|YP_003859126.1| - 0.33 10.8 13.4 3.9 7.3 0.2 3.7 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DUF3268 PF11672.8 gi|305662838|ref|YP_003859126.1| - 0.33 11.3 6.1 0.5 10.7 0.4 2.4 2 1 0 2 2 2 0 zinc-finger-containing domain Zn_Tnp_IS1 PF03811.13 gi|305662838|ref|YP_003859126.1| - 0.35 10.6 14.3 0.5 10.1 0.1 4.3 4 0 0 4 4 4 0 InsA N-terminal domain C1_2 PF03107.16 gi|305662838|ref|YP_003859126.1| - 0.46 10.9 7.4 3.1 8.2 2.4 2.8 3 0 0 3 3 3 0 C1 domain zinc_ribbon_15 PF17032.5 gi|305662838|ref|YP_003859126.1| - 0.61 10.9 10.3 2.2e+02 2.7 10.3 3.1 1 1 0 1 1 1 0 zinc-ribbon family zf-Mss51 PF13824.6 gi|305662838|ref|YP_003859126.1| - 0.65 10.1 12.3 1.8 8.7 0.6 3.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_3 PF13878.6 gi|305662838|ref|YP_003859126.1| - 0.73 9.7 8.6 13 5.7 0.3 3.7 4 0 0 4 4 4 0 zinc-finger of acetyl-transferase ESCO zinc-ribbon_6 PF10005.9 gi|305662838|ref|YP_003859126.1| - 0.92 10.2 5.8 14 6.5 5.8 2.8 1 1 0 1 1 1 0 zinc-ribbon domain FYDLN_acid PF09538.10 gi|305662838|ref|YP_003859126.1| - 0.96 10.2 5.4 5.6 7.7 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (FYDLN_acid) CpXC PF14353.6 gi|305662838|ref|YP_003859126.1| - 1 9.4 11.7 22 5.1 0.7 3.9 2 2 0 2 2 2 0 CpXC protein A2L_zn_ribbon PF08792.10 gi|305662838|ref|YP_003859126.1| - 1.4 8.7 12.0 3.1 7.6 0.0 3.9 3 1 0 4 4 4 0 A2L zinc ribbon domain DUF3797 PF12677.7 gi|305662838|ref|YP_003859126.1| - 1.6 8.7 15.0 1.1 9.3 2.0 3.5 2 2 1 3 3 3 0 Domain of unknown function (DUF3797) zf-HIT PF04438.16 gi|305662838|ref|YP_003859126.1| - 2.2 8.3 19.2 4.7 7.2 0.9 4.1 4 0 0 4 4 4 0 HIT zinc finger zf-TFIIB PF13453.6 gi|305662838|ref|YP_003859126.1| - 2.4 7.6 17.2 9.3 5.7 5.3 3.6 2 2 1 3 3 3 0 Transcription factor zinc-finger TerY_C PF15616.6 gi|305662838|ref|YP_003859126.1| - 2.4 8.3 7.0 4.9 7.3 1.9 2.6 1 1 0 2 2 2 0 TerY-C metal binding domain Baculo_LEF5_C PF11792.8 gi|305662838|ref|YP_003859126.1| - 2.4 7.9 0.0 2.4 7.9 0.0 3.3 4 0 0 4 4 3 0 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_13 PF09855.9 gi|305662838|ref|YP_003859126.1| - 2.5 8.3 11.9 2.6 8.3 0.1 3.8 3 1 1 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) YacG PF03884.14 gi|305662838|ref|YP_003859126.1| - 2.8 7.7 12.1 10 5.9 0.2 3.7 3 1 1 4 4 4 0 DNA gyrase inhibitor YacG Zn_Tnp_IS91 PF14319.6 gi|305662838|ref|YP_003859126.1| - 7.2 6.7 14.2 8 6.6 0.3 3.7 2 2 2 4 4 4 0 Transposase zinc-binding domain DUF2752 PF10825.8 gi|305662838|ref|YP_003859126.1| - 9.7 6.3 7.4 6.3 6.9 0.7 2.8 3 0 0 3 3 2 0 Protein of unknown function (DUF2752) zinc_ribbon_5 PF13719.6 gi|305662838|ref|YP_003859126.1| - 9.8 6.0 15.4 8.3 6.3 0.3 3.7 3 1 0 3 3 3 0 zinc-ribbon domain UPF0113 PF03657.13 gi|305662839|ref|YP_003859127.1| - 2.3e-10 40.6 0.0 4e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 UPF0113 PUA domain PUA PF01472.20 gi|305662839|ref|YP_003859127.1| - 0.0054 16.7 0.1 0.0079 16.1 0.1 1.2 1 0 0 1 1 1 1 PUA domain DUF2456 PF10445.9 gi|305662839|ref|YP_003859127.1| - 0.1 12.7 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2456) Nitroreductase PF00881.24 gi|305662840|ref|YP_003859128.1| - 3.9e-28 98.6 0.0 4.7e-28 98.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|305662840|ref|YP_003859128.1| - 0.00055 19.6 0.0 0.032 13.8 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase PhoU PF01895.19 gi|305662841|ref|YP_003859129.1| - 3.6e-13 49.8 12.3 6.1e-13 49.0 3.5 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|305662841|ref|YP_003859129.1| - 3e-05 23.8 0.0 8.3e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DeoC PF01791.9 gi|305662842|ref|YP_003859130.1| - 2.2e-37 128.9 0.0 2.6e-37 128.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.14 gi|305662842|ref|YP_003859130.1| - 0.016 14.6 0.2 0.032 13.5 0.1 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG RibD_C PF01872.17 gi|305662842|ref|YP_003859130.1| - 0.12 12.2 0.0 0.49 10.2 0.0 1.9 2 0 0 2 2 2 0 RibD C-terminal domain Pilus_CpaD PF09476.10 gi|305662842|ref|YP_003859130.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) PfkB PF00294.24 gi|305662843|ref|YP_003859131.1| - 1.4e-53 182.1 0.1 1.7e-53 181.9 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|305662843|ref|YP_003859131.1| - 1.7e-08 34.1 0.1 2.4e-08 33.6 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Hydrolase_3 PF08282.12 gi|305662844|ref|YP_003859132.1| - 1.1e-33 117.0 0.5 7.5e-23 81.6 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|305662844|ref|YP_003859132.1| - 8.3e-13 48.4 0.0 1.7e-11 44.1 0.0 2.0 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|305662844|ref|YP_003859132.1| - 2.6e-05 24.6 0.6 0.0041 17.4 0.6 3.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|305662844|ref|YP_003859132.1| - 0.0015 19.0 1.3 0.037 14.4 0.0 2.7 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|305662844|ref|YP_003859132.1| - 0.037 13.2 0.1 3.1 6.9 0.0 2.1 2 0 0 2 2 2 0 Trehalose-phosphatase GCH_III PF05165.12 gi|305662844|ref|YP_003859132.1| - 0.055 12.7 0.1 0.3 10.3 0.0 2.1 1 1 1 2 2 2 0 GTP cyclohydrolase III HAD_2 PF13419.6 gi|305662844|ref|YP_003859132.1| - 0.095 12.8 1.0 3.2 7.8 0.1 2.8 2 1 1 3 3 3 0 Haloacid dehalogenase-like hydrolase Coilin_N PF15862.5 gi|305662844|ref|YP_003859132.1| - 0.1 12.4 0.1 4.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Coilin N-terminus Fe-ADH PF00465.19 gi|305662846|ref|YP_003859134.1| - 1.1e-89 300.8 0.0 1.4e-89 300.4 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|305662846|ref|YP_003859134.1| - 7.5e-10 38.9 0.1 1.1e-08 35.1 0.0 2.0 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase PfkB PF00294.24 gi|305662847|ref|YP_003859135.1| - 1.4e-13 50.9 0.0 2.9e-13 49.8 0.0 1.6 2 0 0 2 2 2 1 pfkB family carbohydrate kinase MFS_1 PF07690.16 gi|305662848|ref|YP_003859136.1| - 5.7e-28 97.9 35.4 6.2e-14 51.7 17.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|305662848|ref|YP_003859136.1| - 2.9e-13 49.5 30.7 8.6e-07 28.2 8.9 2.3 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|305662848|ref|YP_003859136.1| - 0.00014 20.4 6.6 0.00014 20.4 6.6 1.6 2 0 0 2 2 2 1 Transmembrane secretion effector Tim17 PF02466.19 gi|305662850|ref|YP_003859138.1| - 0.13 12.7 2.1 0.23 11.8 0.6 2.1 1 1 1 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family ATPase_gene1 PF09527.10 gi|305662850|ref|YP_003859138.1| - 2.4 8.4 19.0 2.3 8.4 9.4 2.7 2 1 1 3 3 3 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter DUF2755 PF10954.8 gi|305662850|ref|YP_003859138.1| - 3.5 7.6 8.3 0.15 12.0 1.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2755) DUF3487 PF11990.8 gi|305662850|ref|YP_003859138.1| - 8.6 6.3 13.4 0.6 10.0 4.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) ATPase PF06745.13 gi|305662851|ref|YP_003859139.1| - 6.3e-32 110.8 0.0 6.3e-32 110.8 0.0 1.6 2 0 0 2 2 2 1 KaiC DnaB_C PF03796.15 gi|305662851|ref|YP_003859139.1| - 6.9e-06 25.6 0.0 1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|305662851|ref|YP_003859139.1| - 1.1e-05 24.3 0.2 0.00058 18.6 0.2 2.2 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_22 PF13401.6 gi|305662851|ref|YP_003859139.1| - 0.00014 22.1 0.0 0.00028 21.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305662851|ref|YP_003859139.1| - 0.00063 20.2 0.0 0.0012 19.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|305662851|ref|YP_003859139.1| - 0.00068 19.6 0.0 0.0014 18.6 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|305662851|ref|YP_003859139.1| - 0.0029 17.2 0.0 0.0047 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|305662851|ref|YP_003859139.1| - 0.0064 17.0 0.0 0.012 16.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.6 gi|305662851|ref|YP_003859139.1| - 0.0084 16.3 0.0 0.02 15.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|305662851|ref|YP_003859139.1| - 0.011 15.4 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|305662851|ref|YP_003859139.1| - 0.024 14.7 0.0 0.06 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|305662851|ref|YP_003859139.1| - 0.032 14.1 0.0 0.11 12.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain TsaE PF02367.17 gi|305662851|ref|YP_003859139.1| - 0.13 12.3 0.0 0.35 10.9 0.0 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Pox_A32 PF04665.12 gi|305662851|ref|YP_003859139.1| - 0.13 11.7 0.8 2.1 7.7 0.2 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein GTP_EFTU PF00009.27 gi|305662851|ref|YP_003859139.1| - 0.16 11.5 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|305662851|ref|YP_003859139.1| - 0.16 11.9 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Roc PF08477.13 gi|305662851|ref|YP_003859139.1| - 0.16 12.2 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase DUF2075 PF09848.9 gi|305662851|ref|YP_003859139.1| - 0.18 11.0 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SRP54 PF00448.22 gi|305662851|ref|YP_003859139.1| - 0.2 11.2 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DsbD PF02683.15 gi|305662852|ref|YP_003859140.1| - 5.3e-07 29.7 14.2 5.3e-07 29.7 14.2 2.3 1 1 1 2 2 2 2 Cytochrome C biogenesis protein transmembrane region ASFV_J13L PF05568.11 gi|305662853|ref|YP_003859141.1| - 1.6 8.5 3.8 2.3 7.9 3.8 1.2 1 0 0 1 1 1 0 African swine fever virus J13L protein DUF4350 PF14258.6 gi|305662854|ref|YP_003859142.1| - 1.1e-05 25.7 0.0 2.2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|305662854|ref|YP_003859142.1| - 0.0043 16.5 0.0 0.0056 16.2 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system AAA_3 PF07726.11 gi|305662855|ref|YP_003859143.1| - 3.9e-62 207.9 0.1 6.8e-62 207.1 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|305662855|ref|YP_003859143.1| - 1.1e-20 73.2 0.3 2.1e-20 72.3 0.3 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|305662855|ref|YP_003859143.1| - 1.6e-17 63.8 0.0 7.5e-17 61.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|305662855|ref|YP_003859143.1| - 8.7e-08 32.7 0.0 1.9e-07 31.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|305662855|ref|YP_003859143.1| - 3.3e-07 30.1 0.1 6e-05 22.8 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|305662855|ref|YP_003859143.1| - 1.3e-06 28.3 0.1 2.5e-05 24.1 0.1 2.5 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|305662855|ref|YP_003859143.1| - 2.2e-06 27.2 0.5 0.054 12.9 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|305662855|ref|YP_003859143.1| - 1.6e-05 24.1 0.0 7.8e-05 21.9 0.0 2.1 1 1 1 2 2 2 1 MCM P-loop domain AAA_16 PF13191.6 gi|305662855|ref|YP_003859143.1| - 0.012 16.0 0.2 0.46 10.8 0.1 2.4 1 1 1 2 2 2 0 AAA ATPase domain DUF58 PF01882.18 gi|305662856|ref|YP_003859144.1| - 8.4e-12 45.2 0.0 1.7e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 TrbC PF04956.13 gi|305662858|ref|YP_003859146.1| - 0.032 14.4 2.5 0.039 14.2 2.5 1.2 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF1129 PF06570.11 gi|305662858|ref|YP_003859146.1| - 0.083 12.4 2.8 0.086 12.3 2.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Deltameth_res PF16020.5 gi|305662858|ref|YP_003859146.1| - 3.7 7.5 5.8 18 5.3 0.4 2.2 1 1 1 2 2 2 0 Deltamethrin resistance Peptidase_M20 PF01546.28 gi|305662859|ref|YP_003859147.1| - 3.1e-36 125.0 0.0 4e-36 124.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|305662859|ref|YP_003859147.1| - 1.5e-18 66.6 0.0 3.7e-18 65.4 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Phage_holin_3_6 PF07332.11 gi|305662860|ref|YP_003859148.1| - 4e-06 26.8 0.5 5.2e-06 26.5 0.5 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF4500 PF14937.6 gi|305662860|ref|YP_003859148.1| - 0.0027 17.7 0.1 0.04 13.9 0.0 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4500) DUF2614 PF11023.8 gi|305662860|ref|YP_003859148.1| - 0.035 14.2 1.1 0.036 14.1 1.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF2231 PF09990.9 gi|305662860|ref|YP_003859148.1| - 0.041 14.3 3.2 0.053 14.0 3.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) Halogen_Hydrol PF10112.9 gi|305662860|ref|YP_003859148.1| - 0.061 13.3 0.1 0.081 12.9 0.1 1.2 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF2207 PF09972.9 gi|305662860|ref|YP_003859148.1| - 0.095 11.4 0.3 0.094 11.5 0.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) O-antigen_lig PF13425.6 gi|305662860|ref|YP_003859148.1| - 9.4 4.9 9.8 14 4.3 9.8 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF131 PF01998.17 gi|305662861|ref|YP_003859149.1| - 5.1e-05 22.8 15.6 5.1e-05 22.8 15.6 2.0 1 1 0 2 2 2 1 Protein of unknown function DUF131 Spo7 PF03907.13 gi|305662861|ref|YP_003859149.1| - 0.9 9.0 4.1 2.9 7.3 4.1 1.7 1 1 0 1 1 1 0 Spo7-like protein SUR7 PF06687.12 gi|305662861|ref|YP_003859149.1| - 1.4 8.5 9.2 2 8.0 9.2 1.2 1 0 0 1 1 1 0 SUR7/PalI family MPS-4 PF17523.2 gi|305662861|ref|YP_003859149.1| - 2.2 8.5 8.7 1.4 9.1 2.7 2.2 2 0 0 2 2 2 0 MinK-related peptide, potassium channel accessory sub-unit protein 4 DHHC PF01529.20 gi|305662861|ref|YP_003859149.1| - 3.2 7.8 7.4 4.8 7.3 7.4 1.3 1 0 0 1 1 1 0 DHHC palmitoyltransferase Stevor PF17410.2 gi|305662861|ref|YP_003859149.1| - 3.8 7.0 6.5 4.8 6.6 6.5 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame HemY_N PF07219.13 gi|305662861|ref|YP_003859149.1| - 9.7 6.4 10.7 0.61 10.3 2.9 2.1 2 0 0 2 2 2 0 HemY protein N-terminus DUF131 PF01998.17 gi|305662862|ref|YP_003859150.1| - 2.7e-08 33.3 11.0 2.7e-08 33.3 11.0 2.5 1 1 1 2 2 1 1 Protein of unknown function DUF131 Tetraspanin PF00335.20 gi|305662862|ref|YP_003859150.1| - 0.048 13.4 7.0 0.071 12.8 7.0 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF898 PF05987.13 gi|305662862|ref|YP_003859150.1| - 0.073 12.1 3.2 0.12 11.4 3.2 1.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DHHC PF01529.20 gi|305662862|ref|YP_003859150.1| - 0.095 12.8 4.5 0.15 12.1 4.5 1.3 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF4064 PF13273.6 gi|305662862|ref|YP_003859150.1| - 0.2 12.0 14.1 0.41 10.9 14.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) 7tm_1 PF00001.21 gi|305662862|ref|YP_003859150.1| - 0.8 9.0 3.8 1.1 8.5 3.8 1.2 1 0 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) Sigma_reg_N PF13800.6 gi|305662862|ref|YP_003859150.1| - 1.3 9.3 16.1 0.32 11.3 1.6 2.2 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF1218 PF06749.12 gi|305662862|ref|YP_003859150.1| - 2.1 8.9 10.3 0.5 10.9 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1218) Baculo_11_kDa PF06143.11 gi|305662862|ref|YP_003859150.1| - 2.3 7.9 15.6 3.1 7.4 0.6 2.3 2 0 0 2 2 2 0 Baculovirus 11 kDa family HemY_N PF07219.13 gi|305662862|ref|YP_003859150.1| - 2.6 8.3 9.8 9.6 6.5 0.1 2.1 2 0 0 2 2 2 0 HemY protein N-terminus LapA_dom PF06305.11 gi|305662862|ref|YP_003859150.1| - 3.4 7.5 7.9 0.65 9.8 0.3 2.3 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF3328 PF11807.8 gi|305662862|ref|YP_003859150.1| - 4.8 6.9 4.9 7.1 6.3 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3328) DUF3784 PF12650.7 gi|305662862|ref|YP_003859150.1| - 5.9 7.2 16.2 3.3 8.0 4.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) SLC3A2_N PF16028.5 gi|305662862|ref|YP_003859150.1| - 7.9 6.1 6.6 0.85 9.2 0.2 2.1 2 0 0 2 2 2 0 Solute carrier family 3 member 2 N-terminus EphA2_TM PF14575.6 gi|305662862|ref|YP_003859150.1| - 8.7 7.3 7.3 6.8 7.6 0.2 2.2 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain SUR7 PF06687.12 gi|305662862|ref|YP_003859150.1| - 8.9 5.9 13.0 18 4.9 13.1 1.4 1 1 0 1 1 1 0 SUR7/PalI family DUF2721 PF11026.8 gi|305662862|ref|YP_003859150.1| - 9.1 6.2 12.4 7.3 6.5 4.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) Kelch_6 PF13964.6 gi|305662863|ref|YP_003859151.1| - 0.00051 20.2 7.8 0.56 10.6 1.5 4.5 2 1 1 3 3 3 2 Kelch motif SBBP PF06739.11 gi|305662863|ref|YP_003859151.1| - 0.0066 16.4 0.4 0.0066 16.4 0.4 3.7 3 0 0 3 3 3 1 Beta-propeller repeat PQQ_3 PF13570.6 gi|305662863|ref|YP_003859151.1| - 0.15 12.6 11.1 8.1 7.1 0.1 4.7 4 0 0 4 4 4 0 PQQ-like domain ThiP_synth PF10120.9 gi|305662864|ref|YP_003859152.1| - 4e-40 137.1 0.0 5.8e-40 136.6 0.0 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_23 PF13384.6 gi|305662864|ref|YP_003859152.1| - 8.3e-05 22.3 0.0 0.00036 20.2 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|305662864|ref|YP_003859152.1| - 0.0093 15.6 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|305662864|ref|YP_003859152.1| - 0.0098 15.9 0.0 0.029 14.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_28 PF13518.6 gi|305662864|ref|YP_003859152.1| - 0.027 14.6 0.0 0.061 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|305662864|ref|YP_003859152.1| - 0.03 14.3 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix RepB PF07506.11 gi|305662864|ref|YP_003859152.1| - 0.047 13.8 0.0 0.071 13.2 0.0 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_37 PF13744.6 gi|305662864|ref|YP_003859152.1| - 0.07 13.1 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|305662866|ref|YP_003859154.1| - 2.8e-15 57.1 0.0 4.7e-15 56.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|305662866|ref|YP_003859154.1| - 1.9e-06 28.2 0.0 3.1e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|305662866|ref|YP_003859154.1| - 0.00031 20.9 0.0 0.00059 20.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|305662867|ref|YP_003859155.1| - 1.5e-09 38.4 0.2 1.9e-07 31.6 0.0 2.4 2 1 0 2 2 2 2 Radical SAM superfamily zf-Di19 PF05605.12 gi|305662870|ref|YP_003859158.1| - 0.00016 21.9 0.1 0.00025 21.3 0.1 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.26 gi|305662870|ref|YP_003859158.1| - 0.00057 20.2 0.2 0.0011 19.3 0.2 1.5 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|305662870|ref|YP_003859158.1| - 0.00095 19.8 0.3 0.002 18.8 0.3 1.6 1 0 0 1 1 1 1 C2H2-type zinc finger Rad50_zn_hook PF04423.14 gi|305662870|ref|YP_003859158.1| - 0.015 15.1 0.1 0.025 14.4 0.1 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C2HC_2 PF13913.6 gi|305662870|ref|YP_003859158.1| - 0.021 14.7 0.5 0.036 14.0 0.5 1.4 1 0 0 1 1 1 0 zinc-finger of a C2HC-type DUF629 PF04780.12 gi|305662870|ref|YP_003859158.1| - 0.027 13.0 0.0 0.038 12.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF629) zf-H2C2_2 PF13465.6 gi|305662870|ref|YP_003859158.1| - 0.04 14.4 0.6 0.18 12.3 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain ARS2 PF04959.13 gi|305662870|ref|YP_003859158.1| - 0.057 13.8 0.1 0.068 13.5 0.1 1.2 1 0 0 1 1 1 0 Arsenite-resistance protein 2 zf-C2H2_jaz PF12171.8 gi|305662870|ref|YP_003859158.1| - 0.069 13.5 0.1 0.14 12.5 0.1 1.5 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-ribbon_3 PF13248.6 gi|305662870|ref|YP_003859158.1| - 0.099 12.1 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-tcix PF14952.6 gi|305662870|ref|YP_003859158.1| - 0.12 12.0 0.2 0.19 11.3 0.2 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding KH_5 PF13184.6 gi|305662871|ref|YP_003859159.1| - 0.36 10.9 2.0 0.44 10.7 0.1 2.1 3 0 0 3 3 3 0 NusA-like KH domain Lon_C PF05362.13 gi|305662872|ref|YP_003859160.1| - 2.3e-08 33.8 0.0 4.8e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain CBS PF00571.28 gi|305662873|ref|YP_003859161.1| - 2.7e-44 149.4 14.6 2.8e-15 56.5 0.1 4.8 5 0 0 5 5 5 4 CBS domain Ribosomal_S30AE PF02482.19 gi|305662873|ref|YP_003859161.1| - 1.1e-05 26.1 0.3 2.4e-05 25.0 0.3 1.6 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein IF3_N PF05198.16 gi|305662873|ref|YP_003859161.1| - 0.0056 16.9 0.9 0.46 10.8 0.0 3.4 4 0 0 4 4 4 1 Translation initiation factor IF-3, N-terminal domain sCache_3_2 PF17203.4 gi|305662873|ref|YP_003859161.1| - 0.5 10.5 2.0 57 3.8 0.0 3.7 4 0 0 4 4 4 0 Single cache domain 3 DUF2919 PF11143.8 gi|305662874|ref|YP_003859162.1| - 0.12 12.6 3.6 0.2 12.0 3.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2919) DUF983 PF06170.12 gi|305662874|ref|YP_003859162.1| - 3.1 8.3 7.7 5.8 7.4 1.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF983) TrkA_N PF02254.18 gi|305662875|ref|YP_003859163.1| - 9.5e-17 61.3 6.7 1e-16 61.2 2.1 2.3 2 1 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|305662875|ref|YP_003859163.1| - 9.1e-07 28.6 0.3 5.1e-06 26.2 0.1 2.3 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|305662875|ref|YP_003859163.1| - 2.3e-05 24.9 0.3 0.00023 21.7 0.1 2.7 1 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|305662875|ref|YP_003859163.1| - 0.0064 16.9 2.0 0.083 13.3 0.1 2.4 1 1 1 2 2 2 1 Putative NAD(P)-binding UPF0113_N PF17833.1 gi|305662875|ref|YP_003859163.1| - 0.029 14.9 5.7 0.041 14.5 3.7 2.4 2 1 0 2 2 2 0 UPF0113 Pre-PUA domain Castor_Poll_mid PF06241.12 gi|305662875|ref|YP_003859163.1| - 0.048 13.6 4.0 0.19 11.7 0.4 2.8 2 1 1 3 3 3 0 Castor and Pollux, part of voltage-gated ion channel DUF3107 PF11305.8 gi|305662875|ref|YP_003859163.1| - 0.049 13.9 4.1 0.22 11.8 0.0 3.0 3 1 1 4 4 4 0 Protein of unknown function (DUF3107) PilI PF10623.9 gi|305662875|ref|YP_003859163.1| - 0.23 11.6 1.0 0.58 10.3 0.2 2.1 2 0 0 2 2 2 0 Plasmid conjugative transfer protein PilI TrkH PF02386.16 gi|305662876|ref|YP_003859164.1| - 2.5e-44 151.6 30.7 2.5e-44 151.6 30.7 2.4 2 1 0 2 2 2 1 Cation transport protein OB_aCoA_assoc PF01796.17 gi|305662877|ref|YP_003859165.1| - 4e-15 55.5 0.1 5.2e-15 55.2 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|305662877|ref|YP_003859165.1| - 9e-12 44.6 3.2 1.2e-11 44.2 3.2 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|305662877|ref|YP_003859165.1| - 0.013 15.5 0.5 0.013 15.5 0.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|305662877|ref|YP_003859165.1| - 0.016 15.2 0.3 0.03 14.3 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|305662877|ref|YP_003859165.1| - 0.028 14.5 4.3 0.084 13.0 4.3 1.8 1 1 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.18 gi|305662877|ref|YP_003859165.1| - 0.12 12.3 1.0 4.3 7.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-LITAF-like PF10601.9 gi|305662877|ref|YP_003859165.1| - 0.17 12.2 1.7 0.18 12.1 0.1 1.8 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|305662877|ref|YP_003859165.1| - 0.43 10.4 6.3 1 9.2 6.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Thiolase_N PF00108.23 gi|305662878|ref|YP_003859166.1| - 3.2e-19 69.3 0.1 5.2e-19 68.6 0.1 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|305662878|ref|YP_003859166.1| - 2e-13 50.0 0.2 3.2e-12 46.2 0.0 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|305662878|ref|YP_003859166.1| - 1.2e-07 31.5 4.0 1.1e-05 25.1 0.5 3.0 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.26 gi|305662878|ref|YP_003859166.1| - 0.00019 21.1 1.7 0.00019 21.1 1.7 2.0 4 0 0 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|305662878|ref|YP_003859166.1| - 0.00078 19.4 0.1 0.081 13.0 0.0 2.5 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Na_H_Exchanger PF00999.21 gi|305662879|ref|YP_003859167.1| - 1.4e-20 73.5 50.0 1.8e-20 73.1 50.0 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Radical_SAM PF04055.21 gi|305662880|ref|YP_003859168.1| - 4.2e-06 27.2 0.0 4.2e-06 27.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|305662880|ref|YP_003859168.1| - 4.8e-05 23.7 0.0 0.00012 22.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|305662880|ref|YP_003859168.1| - 0.00092 19.3 0.0 0.0021 18.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain tRNA_edit PF04073.15 gi|305662881|ref|YP_003859169.1| - 2.5e-25 88.9 0.0 2.9e-25 88.7 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain NfeD PF01957.18 gi|305662882|ref|YP_003859170.1| - 9.2e-14 51.6 0.4 4e-13 49.5 0.4 2.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Sigma70_r2 PF04542.14 gi|305662882|ref|YP_003859170.1| - 0.089 12.6 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70 region 2 SirB PF04247.12 gi|305662882|ref|YP_003859170.1| - 2.2 8.4 12.1 7.3 6.7 3.8 2.9 1 1 2 3 3 3 0 Invasion gene expression up-regulator, SirB Band_7 PF01145.25 gi|305662883|ref|YP_003859171.1| - 7.1e-36 123.9 0.6 1e-35 123.3 0.6 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|305662883|ref|YP_003859171.1| - 0.001 18.8 0.1 0.0017 18.1 0.1 1.3 1 0 0 1 1 1 1 SPFH domain-Band 7 family Glyco_hydro_12 PF01670.16 gi|305662884|ref|YP_003859172.1| - 3.3e-27 95.9 3.4 3.3e-27 95.9 3.4 1.6 2 0 0 2 2 2 1 Glycosyl hydrolase family 12 FG-GAP PF01839.23 gi|305662884|ref|YP_003859172.1| - 0.1 12.8 0.1 1 9.5 0.0 2.3 2 0 0 2 2 2 0 FG-GAP repeat RHH_1 PF01402.21 gi|305662885|ref|YP_003859173.1| - 5.6e-09 35.6 2.0 6e-09 35.5 0.8 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF5616 PF18481.1 gi|305662885|ref|YP_003859173.1| - 0.021 15.2 0.3 0.026 14.8 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5616) ParD_antitoxin PF03693.14 gi|305662885|ref|YP_003859173.1| - 0.075 13.5 0.0 0.086 13.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HTH_23 PF13384.6 gi|305662886|ref|YP_003859174.1| - 0.0073 16.1 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain OrsD PF12013.8 gi|305662886|ref|YP_003859174.1| - 0.027 14.9 0.1 0.044 14.2 0.1 1.3 1 0 0 1 1 1 0 Orsellinic acid/F9775 biosynthesis cluster protein D FaeA PF04703.12 gi|305662886|ref|YP_003859174.1| - 0.068 13.5 0.1 0.14 12.6 0.1 1.6 1 1 0 1 1 1 0 FaeA-like protein HU-DNA_bdg PF14848.6 gi|305662886|ref|YP_003859174.1| - 0.081 12.9 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 DNA-binding domain Nup54_C PF18437.1 gi|305662886|ref|YP_003859174.1| - 0.089 12.7 1.2 0.17 11.8 1.2 1.5 1 1 0 1 1 1 0 Nup54 C-terminal interacting domain Radical_SAM PF04055.21 gi|305662887|ref|YP_003859175.1| - 3.3e-08 34.1 0.3 1.4e-07 32.1 0.2 2.2 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|305662887|ref|YP_003859175.1| - 0.0014 18.7 0.0 0.0035 17.4 0.0 1.7 2 0 0 2 2 2 1 B12 binding domain Acetyltransf_1 PF00583.25 gi|305662890|ref|YP_003859178.1| - 2.5e-22 79.3 0.1 3.1e-22 79.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|305662890|ref|YP_003859178.1| - 1.1e-15 57.9 0.1 1.5e-15 57.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|305662890|ref|YP_003859178.1| - 2e-14 53.6 0.1 2.3e-14 53.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|305662890|ref|YP_003859178.1| - 6.8e-11 42.0 0.1 9.3e-11 41.6 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|305662890|ref|YP_003859178.1| - 4.4e-07 29.7 0.0 6e-07 29.2 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|305662890|ref|YP_003859178.1| - 4.6e-07 30.6 0.2 1.4e-06 29.0 0.2 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|305662890|ref|YP_003859178.1| - 4.9e-07 30.0 0.7 7.5e-07 29.4 0.7 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|305662890|ref|YP_003859178.1| - 7.4e-06 25.7 0.0 1e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_9 PF13527.7 gi|305662890|ref|YP_003859178.1| - 1.4e-05 25.1 0.2 4.5e-05 23.5 0.2 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|305662890|ref|YP_003859178.1| - 0.00013 21.5 0.4 0.00017 21.2 0.4 1.3 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_18 PF18014.1 gi|305662890|ref|YP_003859178.1| - 0.017 14.9 0.0 3.1 7.6 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|305662890|ref|YP_003859178.1| - 0.024 14.6 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Gly_acyl_tr_C PF08444.10 gi|305662890|ref|YP_003859178.1| - 0.035 14.3 0.1 0.059 13.6 0.1 1.3 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region Acetyltransf_CG PF14542.6 gi|305662890|ref|YP_003859178.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase YcxB PF14317.6 gi|305662891|ref|YP_003859179.1| - 0.096 12.4 0.3 1 9.1 0.1 2.3 2 0 0 2 2 2 0 YcxB-like protein Pribosyltran PF00156.27 gi|305662893|ref|YP_003859181.1| - 6.7e-09 35.5 0.0 1.1e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Mnd1 PF03962.15 gi|305662893|ref|YP_003859181.1| - 0.28 11.5 4.7 9.1 6.7 0.2 2.9 3 0 0 3 3 3 0 Mnd1 HTH domain HTH_11 PF08279.12 gi|305662893|ref|YP_003859181.1| - 0.3 11.1 1.6 0.47 10.4 0.0 2.2 3 0 0 3 3 3 0 HTH domain DUF5497 PF17601.2 gi|305662894|ref|YP_003859182.1| - 0.028 14.7 0.1 0.046 14.1 0.1 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5497) ACP_syn_III_C PF08541.10 gi|305662896|ref|YP_003859184.1| - 7.8e-14 51.6 0.0 3.1e-13 49.7 0.0 2.0 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|305662896|ref|YP_003859184.1| - 4.5e-06 26.2 0.0 8.4e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.10 gi|305662896|ref|YP_003859184.1| - 8.8e-06 25.5 0.1 0.00059 19.5 0.0 2.1 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.10 gi|305662896|ref|YP_003859184.1| - 0.00044 20.1 0.5 0.00099 18.9 0.3 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Chal_sti_synt_N PF00195.19 gi|305662896|ref|YP_003859184.1| - 0.022 14.2 0.0 1.7 8.0 0.0 2.2 2 0 0 2 2 2 0 Chalcone and stilbene synthases, N-terminal domain HTH_35 PF13693.6 gi|305662896|ref|YP_003859184.1| - 0.053 13.6 0.0 4.3 7.5 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Inhibitor_I9 PF05922.16 gi|305662896|ref|YP_003859184.1| - 0.12 13.0 0.0 0.23 12.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase inhibitor I9 EMG1 PF03587.14 gi|305662898|ref|YP_003859186.1| - 2.6e-49 167.5 0.0 2.9e-49 167.4 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Whib PF02467.16 gi|305662899|ref|YP_003859187.1| - 0.93 10.1 6.7 0.71 10.5 0.5 2.3 2 0 0 2 2 2 0 Transcription factor WhiB ROK PF00480.20 gi|305662900|ref|YP_003859188.1| - 8.4e-54 183.0 0.0 1e-53 182.8 0.0 1.0 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.21 gi|305662900|ref|YP_003859188.1| - 0.026 14.1 0.0 0.051 13.1 0.0 1.5 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain PhosphMutase PF10143.9 gi|305662901|ref|YP_003859189.1| - 2.1e-42 144.9 0.0 2.9e-42 144.4 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|305662901|ref|YP_003859189.1| - 1.2e-28 100.1 0.0 1.6e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|305662901|ref|YP_003859189.1| - 0.00015 21.5 0.0 0.00036 20.2 0.0 1.6 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.20 gi|305662901|ref|YP_003859189.1| - 0.01 14.9 0.0 0.014 14.3 0.0 1.1 1 0 0 1 1 1 0 Alkaline phosphatase PhoU PF01895.19 gi|305662902|ref|YP_003859190.1| - 8.7e-13 48.5 3.1 1.7e-11 44.4 0.5 2.9 3 1 0 3 3 3 1 PhoU domain MazE_antitoxin PF04014.18 gi|305662902|ref|YP_003859190.1| - 2.1e-06 27.5 0.3 6.4e-06 26.0 0.1 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin SymE_toxin PF08845.10 gi|305662902|ref|YP_003859190.1| - 0.1 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system DUF402 PF04167.13 gi|305662903|ref|YP_003859191.1| - 9.1e-15 54.6 0.2 2e-14 53.5 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|305662903|ref|YP_003859191.1| - 2.2e-06 27.3 0.3 3.5e-06 26.7 0.3 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family HTH_50 PF18024.1 gi|305662903|ref|YP_003859191.1| - 5.1 6.8 6.9 3.5 7.3 0.1 3.9 4 1 0 4 4 4 0 Helix-turn-helix domain UPF0147 PF03685.13 gi|305662904|ref|YP_003859192.1| - 2.5e-32 110.7 0.1 3.1e-32 110.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|305662904|ref|YP_003859192.1| - 0.0068 16.7 0.1 0.076 13.3 0.0 2.1 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0253) Lactamase_B_3 PF13483.6 gi|305662905|ref|YP_003859193.1| - 1.1e-46 158.7 0.3 1.5e-46 158.2 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|305662905|ref|YP_003859193.1| - 3.4e-11 43.1 4.6 9.4e-08 31.8 0.1 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|305662905|ref|YP_003859193.1| - 0.016 15.2 1.6 0.13 12.3 0.6 2.1 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily CxxCxxCC PF03692.15 gi|305662906|ref|YP_003859194.1| - 2.7e-09 37.6 0.2 4.8e-09 36.8 0.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SapC PF07277.11 gi|305662906|ref|YP_003859194.1| - 0.02 14.5 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 SapC Methyltransf_25 PF13649.6 gi|305662907|ref|YP_003859195.1| - 4.3e-11 43.4 0.0 6.1e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|305662907|ref|YP_003859195.1| - 1e-08 35.1 0.0 1.2e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|305662907|ref|YP_003859195.1| - 1.7e-08 35.0 0.0 2.7e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|305662907|ref|YP_003859195.1| - 3.7e-08 33.2 0.0 1.1e-06 28.4 0.0 2.0 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_18 PF12847.7 gi|305662907|ref|YP_003859195.1| - 8.3e-06 25.8 0.0 1.2e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|305662907|ref|YP_003859195.1| - 3.3e-05 23.7 0.0 0.00026 20.7 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|305662907|ref|YP_003859195.1| - 5.2e-05 22.8 0.0 6.3e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|305662907|ref|YP_003859195.1| - 9.5e-05 21.8 0.0 0.00013 21.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|305662907|ref|YP_003859195.1| - 0.0001 22.2 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|305662907|ref|YP_003859195.1| - 0.00021 20.4 0.0 0.00026 20.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|305662907|ref|YP_003859195.1| - 0.00027 20.5 0.0 0.00036 20.1 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.14 gi|305662907|ref|YP_003859195.1| - 0.00033 20.2 0.0 0.00046 19.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|305662907|ref|YP_003859195.1| - 0.00074 20.2 0.0 0.0011 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|305662907|ref|YP_003859195.1| - 0.00095 18.5 0.0 0.0011 18.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_15 PF09445.10 gi|305662907|ref|YP_003859195.1| - 0.0092 15.6 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase CMAS PF02353.20 gi|305662907|ref|YP_003859195.1| - 0.013 14.8 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|305662907|ref|YP_003859195.1| - 0.058 13.4 0.0 0.069 13.1 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|305662907|ref|YP_003859195.1| - 0.081 12.7 0.1 0.093 12.5 0.1 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|305662907|ref|YP_003859195.1| - 0.12 12.1 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 HEPN PF05168.14 gi|305662908|ref|YP_003859196.1| - 0.012 15.8 1.2 0.047 13.8 0.0 2.1 2 1 0 2 2 2 0 HEPN domain Fzo_mitofusin PF04799.13 gi|305662908|ref|YP_003859196.1| - 0.018 14.6 1.3 0.034 13.7 0.3 1.8 1 1 1 2 2 2 0 fzo-like conserved region Radical_SAM PF04055.21 gi|305662909|ref|YP_003859197.1| - 5.2e-18 66.0 0.0 3.8e-17 63.2 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily DUF4059 PF13268.6 gi|305662909|ref|YP_003859197.1| - 0.12 12.8 0.1 0.24 11.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4059) DUF2192 PF09958.9 gi|305662910|ref|YP_003859198.1| - 3.8e-82 275.2 0.8 4.4e-82 275.0 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) UBA_3 PF09288.10 gi|305662910|ref|YP_003859198.1| - 0.0095 15.7 1.1 3.6 7.5 0.1 2.9 3 0 0 3 3 3 2 Fungal ubiquitin-associated domain DEAD_assoc PF08494.11 gi|305662912|ref|YP_003859200.1| - 6e-54 182.7 0.0 9.8e-54 182.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|305662912|ref|YP_003859200.1| - 2.8e-28 98.9 0.0 2.9e-27 95.5 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|305662912|ref|YP_003859200.1| - 7.8e-16 58.4 0.1 3.3e-15 56.4 0.1 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|305662912|ref|YP_003859200.1| - 1.3e-09 38.3 0.0 9.3e-09 35.5 0.0 2.4 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|305662912|ref|YP_003859200.1| - 0.0067 15.2 0.0 0.013 14.2 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain NOG1_N PF17835.1 gi|305662912|ref|YP_003859200.1| - 0.016 15.2 0.5 0.04 13.9 0.5 1.6 1 0 0 1 1 1 0 NOG1 N-terminal helical domain AAA_22 PF13401.6 gi|305662912|ref|YP_003859200.1| - 0.054 13.8 0.6 13 6.0 0.0 3.4 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.6 gi|305662912|ref|YP_003859200.1| - 0.082 13.2 0.1 0.76 10.1 0.0 2.5 2 1 0 2 2 2 0 AAA domain PsbN PF02468.15 gi|305662913|ref|YP_003859201.1| - 0.93 9.4 2.7 3.2 7.7 2.7 2.0 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) Fer4 PF00037.27 gi|305662914|ref|YP_003859202.1| - 6.2e-06 25.8 16.9 0.008 16.0 3.5 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|305662914|ref|YP_003859202.1| - 7.3e-06 25.8 13.2 0.0007 19.6 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|305662914|ref|YP_003859202.1| - 8.3e-06 26.3 8.2 1.5e-05 25.4 8.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|305662914|ref|YP_003859202.1| - 6.9e-05 22.7 11.3 0.0026 17.7 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|305662914|ref|YP_003859202.1| - 0.00038 20.6 9.9 0.00084 19.5 10.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|305662914|ref|YP_003859202.1| - 0.00042 20.4 7.2 0.00048 20.2 7.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|305662914|ref|YP_003859202.1| - 0.00049 21.0 11.7 0.032 15.2 3.9 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|305662914|ref|YP_003859202.1| - 0.00061 19.9 10.6 0.0007 19.7 10.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|305662914|ref|YP_003859202.1| - 0.011 15.9 14.0 0.064 13.4 14.3 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|305662914|ref|YP_003859202.1| - 0.2 12.7 8.7 0.62 11.1 0.7 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|305662914|ref|YP_003859202.1| - 0.82 9.5 10.5 1.3 8.8 1.0 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster zf-piccolo PF05715.13 gi|305662914|ref|YP_003859202.1| - 5.2 7.3 13.0 3.6 7.8 3.5 2.1 1 1 1 2 2 2 0 Piccolo Zn-finger SIS PF01380.22 gi|305662915|ref|YP_003859203.1| - 2.2e-48 163.4 0.9 1.7e-29 102.3 0.5 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|305662915|ref|YP_003859203.1| - 1.1e-20 74.2 0.0 1.9e-20 73.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|305662915|ref|YP_003859203.1| - 2.1e-16 60.0 0.0 3.3e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|305662915|ref|YP_003859203.1| - 0.00041 20.4 0.3 0.0022 18.0 0.1 2.2 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|305662915|ref|YP_003859203.1| - 0.0094 14.9 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF1788 PF08747.11 gi|305662915|ref|YP_003859203.1| - 0.16 11.9 0.0 25 4.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1788) NTP_transferase PF00483.23 gi|305662916|ref|YP_003859204.1| - 3.9e-18 65.9 0.0 5.2e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|305662916|ref|YP_003859204.1| - 1.1e-14 53.5 14.1 3.6e-08 32.8 0.3 4.9 2 1 4 6 6 6 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|305662916|ref|YP_003859204.1| - 3.7e-12 46.9 0.0 4.5e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|305662916|ref|YP_003859204.1| - 0.00015 21.4 3.8 0.047 13.4 0.0 3.8 3 1 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|305662916|ref|YP_003859204.1| - 0.0024 17.7 0.1 0.0035 17.1 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF3930 PF13067.6 gi|305662916|ref|YP_003859204.1| - 0.041 14.1 0.3 0.15 12.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3930) NTP_transf_3 PF12804.7 gi|305662917|ref|YP_003859205.1| - 1.2e-12 48.4 0.0 2.1e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain CDP-OH_P_transf PF01066.21 gi|305662917|ref|YP_003859205.1| - 3.5e-10 40.5 1.8 3.5e-10 40.5 1.8 4.3 4 2 0 4 4 4 1 CDP-alcohol phosphatidyltransferase NTP_transferase PF00483.23 gi|305662917|ref|YP_003859205.1| - 3.6e-07 30.0 0.0 5.8e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase ABC_tran PF00005.27 gi|305662918|ref|YP_003859206.1| - 7e-22 78.4 0.0 1e-21 77.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305662918|ref|YP_003859206.1| - 1.4e-07 31.6 0.0 0.00014 21.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|305662918|ref|YP_003859206.1| - 0.15 12.8 0.0 0.32 11.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) ABC2_membrane_2 PF12679.7 gi|305662919|ref|YP_003859207.1| - 2.3e-17 63.2 26.4 1.1e-16 61.0 26.4 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|305662919|ref|YP_003859207.1| - 0.0031 17.5 13.9 0.0031 17.5 13.9 2.6 3 1 0 3 3 3 1 ABC-2 family transporter protein LAB_N PF07578.11 gi|305662920|ref|YP_003859208.1| - 0.04 14.0 2.9 0.064 13.3 2.9 1.3 1 0 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain HD PF01966.22 gi|305662921|ref|YP_003859209.1| - 9e-15 55.0 0.8 1.7e-14 54.1 0.8 1.5 1 0 0 1 1 1 1 HD domain MIOX PF05153.15 gi|305662921|ref|YP_003859209.1| - 0.038 13.5 0.1 0.051 13.1 0.1 1.2 1 0 0 1 1 1 0 Myo-inositol oxygenase HDOD PF08668.12 gi|305662921|ref|YP_003859209.1| - 0.068 12.6 0.1 0.15 11.5 0.1 1.6 1 1 0 1 1 1 0 HDOD domain DUF4202 PF13875.6 gi|305662921|ref|YP_003859209.1| - 0.19 11.6 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4202) DUF996 PF06195.13 gi|305662922|ref|YP_003859210.1| - 6.3e-32 110.7 29.2 6.3e-32 110.7 29.2 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF996) Synaptobrevin PF00957.21 gi|305662922|ref|YP_003859210.1| - 0.006 16.4 1.7 0.006 16.4 1.7 4.5 3 2 1 4 4 4 1 Synaptobrevin MpPF26 PF07666.11 gi|305662922|ref|YP_003859210.1| - 0.021 14.9 13.3 0.021 14.9 13.3 2.4 2 1 0 2 2 2 0 M penetrans paralogue family 26 G0-G1_switch_2 PF15103.6 gi|305662922|ref|YP_003859210.1| - 0.071 13.5 0.8 5.5 7.5 0.4 2.3 2 0 0 2 2 2 0 G0/G1 switch protein 2 Abhydrolase_9_N PF15420.6 gi|305662922|ref|YP_003859210.1| - 0.7 9.9 3.6 0.74 9.8 1.9 1.6 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus DUF433 PF04255.14 gi|305662923|ref|YP_003859211.1| - 1.5e-26 92.0 0.1 1.9e-26 91.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) GerE PF00196.19 gi|305662923|ref|YP_003859211.1| - 0.0011 18.5 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r3 PF04539.16 gi|305662923|ref|YP_003859211.1| - 0.002 18.2 0.1 0.0031 17.6 0.1 1.3 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_7 PF02796.15 gi|305662923|ref|YP_003859211.1| - 0.0079 16.3 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|305662923|ref|YP_003859211.1| - 0.015 15.0 0.0 0.047 13.5 0.0 1.7 1 1 1 2 2 2 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|305662923|ref|YP_003859211.1| - 0.024 14.1 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF4358 PF14270.6 gi|305662923|ref|YP_003859211.1| - 0.027 14.7 0.1 0.033 14.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) HTH_28 PF13518.6 gi|305662923|ref|YP_003859211.1| - 0.046 13.9 0.0 0.095 12.8 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain SapB_2 PF03489.17 gi|305662923|ref|YP_003859211.1| - 0.14 12.3 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Saposin-like type B, region 2 UPF0240 PF06784.11 gi|305662923|ref|YP_003859211.1| - 0.21 11.7 0.0 0.26 11.3 0.0 1.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0240) SinI PF08671.10 gi|305662923|ref|YP_003859211.1| - 0.23 11.3 2.3 0.77 9.6 0.1 2.5 3 0 0 3 3 3 0 Anti-repressor SinI DUF5615 PF18480.1 gi|305662924|ref|YP_003859212.1| - 5.6e-08 32.4 0.1 9.5e-08 31.7 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF5615) ABC_tran PF00005.27 gi|305662925|ref|YP_003859213.1| - 1.7e-22 80.4 0.0 2.4e-22 79.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305662925|ref|YP_003859213.1| - 7.3e-10 39.1 2.5 5.1e-05 23.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|305662925|ref|YP_003859213.1| - 0.00048 19.8 0.1 0.00093 18.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|305662925|ref|YP_003859213.1| - 0.0012 19.2 0.1 0.025 14.9 0.1 2.8 1 1 1 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|305662925|ref|YP_003859213.1| - 0.0013 18.7 0.1 0.0031 17.4 0.1 1.6 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 gi|305662925|ref|YP_003859213.1| - 0.0018 18.2 0.2 0.0054 16.7 0.0 1.7 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|305662925|ref|YP_003859213.1| - 0.0066 16.9 0.0 0.0093 16.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|305662925|ref|YP_003859213.1| - 0.0086 16.3 0.2 0.051 13.8 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|305662925|ref|YP_003859213.1| - 0.014 15.9 0.2 0.028 14.9 0.1 1.5 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|305662925|ref|YP_003859213.1| - 0.016 15.1 1.4 0.079 12.9 0.2 2.2 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|305662925|ref|YP_003859213.1| - 0.017 15.7 0.5 0.029 14.9 0.5 1.5 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|305662925|ref|YP_003859213.1| - 0.08 12.7 0.2 3.2 7.5 0.0 2.4 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DUF3744 PF12558.8 gi|305662925|ref|YP_003859213.1| - 0.082 13.7 0.0 0.17 12.7 0.0 1.5 1 0 0 1 1 1 0 ATP-binding cassette cobalt transporter AAA PF00004.29 gi|305662925|ref|YP_003859213.1| - 0.12 12.8 0.1 1.1 9.8 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|305662925|ref|YP_003859213.1| - 0.14 11.6 0.1 0.42 10.0 0.1 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|305662925|ref|YP_003859213.1| - 0.34 9.9 2.8 0.75 8.8 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein CbiQ PF02361.16 gi|305662926|ref|YP_003859214.1| - 1.4e-18 67.4 18.2 2e-18 66.9 18.2 1.2 1 0 0 1 1 1 1 Cobalt transport protein Pga1 PF10333.9 gi|305662926|ref|YP_003859214.1| - 0.16 11.8 1.7 0.35 10.7 1.7 1.5 1 0 0 1 1 1 0 GPI-Mannosyltransferase II co-activator ABC_tran PF00005.27 gi|305662927|ref|YP_003859215.1| - 2.3e-25 89.7 0.0 3.3e-25 89.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305662927|ref|YP_003859215.1| - 1.2e-11 45.1 3.0 1e-05 25.5 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|305662927|ref|YP_003859215.1| - 0.00068 19.4 0.0 0.0017 18.1 0.0 1.5 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|305662927|ref|YP_003859215.1| - 0.00071 20.1 0.1 0.0014 19.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|305662927|ref|YP_003859215.1| - 0.0038 16.9 0.2 0.0071 16.1 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|305662927|ref|YP_003859215.1| - 0.021 15.1 0.0 0.04 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|305662927|ref|YP_003859215.1| - 0.022 15.1 0.0 0.039 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|305662927|ref|YP_003859215.1| - 0.032 13.7 0.3 0.22 10.9 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|305662927|ref|YP_003859215.1| - 0.035 13.8 0.0 0.054 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|305662927|ref|YP_003859215.1| - 0.043 14.1 0.0 0.073 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|305662927|ref|YP_003859215.1| - 0.047 13.9 0.0 0.075 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|305662927|ref|YP_003859215.1| - 0.077 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|305662927|ref|YP_003859215.1| - 0.099 12.5 0.2 0.22 11.4 0.1 1.6 1 1 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|305662927|ref|YP_003859215.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|305662927|ref|YP_003859215.1| - 0.16 11.9 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|305662927|ref|YP_003859215.1| - 0.17 12.4 0.0 0.29 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|305662927|ref|YP_003859215.1| - 0.19 11.6 0.1 0.31 10.9 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.6 gi|305662927|ref|YP_003859215.1| - 0.67 8.5 1.4 1.1 7.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain GHMP_kinases_N PF00288.26 gi|305662928|ref|YP_003859216.1| - 1.1e-05 25.6 0.1 2.3e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain OATP PF03137.20 gi|305662929|ref|YP_003859217.1| - 0.096 11.0 3.2 0.17 10.1 3.2 1.6 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family Orai-1 PF07856.12 gi|305662929|ref|YP_003859217.1| - 1.4 8.6 8.8 0.25 11.0 2.4 2.3 1 1 1 2 2 2 0 Mediator of CRAC channel activity DUF2157 PF09925.9 gi|305662929|ref|YP_003859217.1| - 4.9 6.9 14.6 1 9.1 10.9 1.9 1 1 0 2 2 2 0 Predicted membrane protein (DUF2157) DMRL_synthase PF00885.19 gi|305662930|ref|YP_003859218.1| - 3.5e-27 95.0 0.0 4.1e-27 94.7 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PIN PF01850.21 gi|305662931|ref|YP_003859219.1| - 5.9e-17 62.3 0.1 8.3e-17 61.8 0.1 1.2 1 0 0 1 1 1 1 PIN domain PI3K_C2 PF00792.24 gi|305662931|ref|YP_003859219.1| - 0.15 12.0 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoinositide 3-kinase C2 DUF104 PF01954.16 gi|305662932|ref|YP_003859220.1| - 7.6e-26 90.3 3.6 8.6e-26 90.2 3.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 MazE_antitoxin PF04014.18 gi|305662932|ref|YP_003859220.1| - 0.044 13.7 0.6 0.071 13.1 0.6 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin HTH_45 PF14947.6 gi|305662933|ref|YP_003859221.1| - 4.1e-17 61.9 2.8 4.1e-17 61.9 2.8 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix Ribosomal_S8e PF01201.22 gi|305662933|ref|YP_003859221.1| - 0.18 12.0 0.1 0.21 11.7 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein S8e UPF0220 PF05255.11 gi|305662934|ref|YP_003859222.1| - 0.0044 16.6 1.9 0.025 14.2 0.2 2.3 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0220) Peptidase_S24 PF00717.23 gi|305662935|ref|YP_003859223.1| - 5.5e-07 29.4 0.3 5.5e-07 29.4 0.3 1.8 2 0 0 2 2 2 1 Peptidase S24-like FG-GAP PF01839.23 gi|305662936|ref|YP_003859224.1| - 0.00044 20.3 0.3 0.0013 18.8 0.0 1.9 2 0 0 2 2 2 1 FG-GAP repeat VCBS PF13517.6 gi|305662936|ref|YP_003859224.1| - 0.019 15.5 0.0 0.11 13.1 0.0 2.3 2 0 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella CE2_N PF17996.1 gi|305662936|ref|YP_003859224.1| - 0.1 12.6 0.0 1.2 9.2 0.0 2.4 1 1 0 1 1 1 0 Carbohydrate esterase 2 N-terminal DEC-1_N PF04625.13 gi|305662936|ref|YP_003859224.1| - 3.6 6.5 4.7 5 6.0 4.7 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region VCBS PF13517.6 gi|305662937|ref|YP_003859225.1| - 2.7 8.7 8.9 23 5.7 3.2 2.6 2 1 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Glyco_hydro_42 PF02449.15 gi|305662940|ref|YP_003859228.1| - 5.8e-06 25.9 0.2 1.3e-05 24.7 0.2 1.5 1 1 0 1 1 1 1 Beta-galactosidase Cellulase PF00150.18 gi|305662940|ref|YP_003859228.1| - 0.0004 19.9 0.0 0.00081 18.9 0.0 1.4 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Bactofilin PF04519.13 gi|305662941|ref|YP_003859229.1| - 5.1e-06 26.7 15.9 0.0086 16.4 5.7 3.0 1 1 2 3 3 3 3 Polymer-forming cytoskeletal MFS_1 PF07690.16 gi|305662942|ref|YP_003859230.1| - 7.3e-36 123.8 47.3 2.9e-31 108.7 33.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|305662942|ref|YP_003859230.1| - 1.6e-06 27.3 5.8 1.6e-06 27.3 5.8 2.7 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|305662942|ref|YP_003859230.1| - 1.8e-06 27.1 11.5 1.8e-06 27.1 11.5 2.3 1 1 1 2 2 2 1 Sugar (and other) transporter OATP PF03137.20 gi|305662942|ref|YP_003859230.1| - 0.00062 18.2 14.5 0.0028 16.0 0.3 2.6 2 1 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family MFS_4 PF06779.14 gi|305662942|ref|YP_003859230.1| - 0.015 14.6 14.6 0.021 14.1 14.6 1.2 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB NAD_binding_2 PF03446.15 gi|305662943|ref|YP_003859231.1| - 3.1e-25 89.2 0.0 4.4e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|305662943|ref|YP_003859231.1| - 1.6e-07 31.6 0.0 2.4e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|305662943|ref|YP_003859231.1| - 1.6e-06 27.6 0.1 2.3e-06 27.1 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|305662943|ref|YP_003859231.1| - 2.6e-06 27.5 0.1 4.3e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|305662943|ref|YP_003859231.1| - 3.2e-05 24.4 0.0 6.2e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|305662943|ref|YP_003859231.1| - 0.0091 15.6 0.0 0.024 14.3 0.0 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|305662943|ref|YP_003859231.1| - 0.015 15.2 0.1 0.036 14.0 0.0 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|305662943|ref|YP_003859231.1| - 0.025 15.4 0.0 0.046 14.5 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.12 gi|305662943|ref|YP_003859231.1| - 0.035 13.7 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Kelch_2 PF07646.15 gi|305662944|ref|YP_003859232.1| - 0.16 12.0 0.1 0.51 10.4 0.1 1.9 1 0 0 1 1 1 0 Kelch motif Kelch_1 PF01344.25 gi|305662944|ref|YP_003859232.1| - 2.4 7.8 7.0 0.24 11.0 0.5 2.6 3 0 0 3 3 3 0 Kelch motif Peptidase_M48 PF01435.18 gi|305662945|ref|YP_003859233.1| - 2.1e-43 148.4 0.0 8.9e-43 146.4 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M48 DUF5411 PF17424.2 gi|305662945|ref|YP_003859233.1| - 0.03 14.3 0.1 0.03 14.3 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5411) Peptidase_M56 PF05569.11 gi|305662945|ref|YP_003859233.1| - 1.8 7.6 10.8 0.06 12.5 4.5 1.7 2 1 0 2 2 2 0 BlaR1 peptidase M56 DUF4714 PF15833.5 gi|305662945|ref|YP_003859233.1| - 2 8.4 7.4 12 5.9 4.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4714) TM_helix PF05552.12 gi|305662946|ref|YP_003859234.1| - 3.4e-06 26.9 18.3 8.2e-06 25.7 5.2 5.2 7 0 0 7 7 7 2 Conserved TM helix DUF429 PF04250.13 gi|305662947|ref|YP_003859235.1| - 8.9e-07 28.9 0.2 5e-05 23.2 0.2 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DUF998 PF06197.13 gi|305662948|ref|YP_003859236.1| - 2e-23 83.0 17.6 2.4e-23 82.7 17.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Tetraspanin PF00335.20 gi|305662948|ref|YP_003859236.1| - 0.17 11.6 19.2 0.081 12.6 11.5 2.9 1 1 1 2 2 2 0 Tetraspanin family PmbA_TldD PF01523.16 gi|305662949|ref|YP_003859237.1| - 2.2e-51 175.4 0.1 5.3e-51 174.1 0.0 1.6 2 0 0 2 2 2 1 Putative modulator of DNA gyrase HEPN PF05168.14 gi|305662950|ref|YP_003859238.1| - 2.1e-18 66.6 1.2 2.9e-18 66.1 1.2 1.2 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|305662951|ref|YP_003859239.1| - 4.1e-07 30.2 0.2 5e-07 29.9 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|305662951|ref|YP_003859239.1| - 0.00027 21.0 0.1 0.00031 20.7 0.1 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Kelch_1 PF01344.25 gi|305662951|ref|YP_003859239.1| - 0.17 11.5 0.1 0.34 10.5 0.1 1.5 1 1 0 1 1 1 0 Kelch motif HTH_24 PF13412.6 gi|305662952|ref|YP_003859240.1| - 1.1e-08 34.5 0.0 1.8e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|305662952|ref|YP_003859240.1| - 2.1e-08 33.9 0.1 3.1e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|305662952|ref|YP_003859240.1| - 7e-08 32.2 0.1 1.1e-07 31.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|305662952|ref|YP_003859240.1| - 9.5e-07 28.8 0.0 1.4e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|305662952|ref|YP_003859240.1| - 1.5e-06 27.9 0.0 2.4e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|305662952|ref|YP_003859240.1| - 0.0016 18.3 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|305662952|ref|YP_003859240.1| - 0.0026 17.7 0.0 0.0043 17.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|305662952|ref|YP_003859240.1| - 0.011 15.7 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|305662952|ref|YP_003859240.1| - 0.011 15.3 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|305662952|ref|YP_003859240.1| - 0.013 15.7 0.0 0.022 15.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|305662952|ref|YP_003859240.1| - 0.016 15.6 0.0 0.027 15.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|305662952|ref|YP_003859240.1| - 0.022 15.1 0.0 0.04 14.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator GerE PF00196.19 gi|305662952|ref|YP_003859240.1| - 0.03 13.9 0.0 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family SpoIIID PF12116.8 gi|305662952|ref|YP_003859240.1| - 0.044 13.9 0.1 0.12 12.4 0.0 1.8 3 0 0 3 3 2 0 Stage III sporulation protein D HTH_23 PF13384.6 gi|305662952|ref|YP_003859240.1| - 0.062 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain LexA_DNA_bind PF01726.16 gi|305662952|ref|YP_003859240.1| - 0.063 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain MerR_1 PF13411.6 gi|305662952|ref|YP_003859240.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 MerR HTH family regulatory protein Beta_propel PF09826.9 gi|305662953|ref|YP_003859241.1| - 7e-130 434.3 3.6 8.3e-130 434.0 3.6 1.0 1 0 0 1 1 1 1 Beta propeller domain ABC2_membrane_3 PF12698.7 gi|305662954|ref|YP_003859242.1| - 3.9e-23 82.1 36.8 4.9e-23 81.8 36.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|305662954|ref|YP_003859242.1| - 1.5e-13 50.7 21.9 2e-13 50.3 21.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|305662954|ref|YP_003859242.1| - 2.2e-07 31.0 15.1 2.2e-07 31.0 15.1 2.8 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|305662954|ref|YP_003859242.1| - 2.7e-07 30.2 30.7 0.00014 21.4 22.6 2.9 3 1 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|305662954|ref|YP_003859242.1| - 1.5e-05 24.6 11.2 1.5e-05 24.6 11.2 3.2 3 0 0 3 3 3 1 ABC-2 family transporter protein RNA_pol PF00940.19 gi|305662954|ref|YP_003859242.1| - 0.08 11.8 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 DNA-dependent RNA polymerase TadE PF07811.12 gi|305662954|ref|YP_003859242.1| - 0.22 11.8 0.3 0.22 11.8 0.3 4.1 5 0 0 5 5 5 0 TadE-like protein TMEM154 PF15102.6 gi|305662954|ref|YP_003859242.1| - 2.6 8.0 6.3 8 6.4 1.1 2.8 2 0 0 2 2 2 0 TMEM154 protein family ABC_tran PF00005.27 gi|305662955|ref|YP_003859243.1| - 5.9e-26 91.6 0.0 7.9e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305662955|ref|YP_003859243.1| - 4e-10 40.0 0.1 0.00025 21.0 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SRP54 PF00448.22 gi|305662955|ref|YP_003859243.1| - 0.00012 21.8 0.1 0.0015 18.2 0.1 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|305662955|ref|YP_003859243.1| - 0.00072 20.1 1.0 0.001 19.6 1.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|305662955|ref|YP_003859243.1| - 0.001 19.4 0.0 0.0016 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|305662955|ref|YP_003859243.1| - 0.0014 18.1 0.2 0.75 9.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|305662955|ref|YP_003859243.1| - 0.0054 17.1 0.0 0.0084 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|305662955|ref|YP_003859243.1| - 0.0055 16.5 0.0 0.0087 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|305662955|ref|YP_003859243.1| - 0.0059 16.3 0.1 0.011 15.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|305662955|ref|YP_003859243.1| - 0.017 14.8 0.0 0.034 13.9 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|305662955|ref|YP_003859243.1| - 0.018 14.3 0.0 0.24 10.7 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.29 gi|305662955|ref|YP_003859243.1| - 0.018 15.4 0.1 0.035 14.5 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AvrPphF-ORF-2 PF09143.10 gi|305662955|ref|YP_003859243.1| - 0.03 14.3 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 AvrPphF-ORF-2 AAA_28 PF13521.6 gi|305662955|ref|YP_003859243.1| - 0.041 14.1 0.0 0.069 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|305662955|ref|YP_003859243.1| - 0.077 12.7 0.3 1.5 8.5 0.2 2.5 2 1 1 3 3 3 0 AAA domain AAA_5 PF07728.14 gi|305662955|ref|YP_003859243.1| - 0.11 12.5 0.1 0.5 10.4 0.1 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) gag-asp_proteas PF13975.6 gi|305662958|ref|YP_003859246.1| - 1.2e-09 38.6 0.2 1.9e-09 38.0 0.2 1.3 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|305662958|ref|YP_003859246.1| - 1.8e-09 38.1 0.2 3.5e-09 37.2 0.2 1.6 1 1 1 2 2 2 1 Aspartyl protease Pribosyltran PF00156.27 gi|305662958|ref|YP_003859246.1| - 0.0021 17.6 0.2 0.0026 17.3 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain RVP PF00077.20 gi|305662958|ref|YP_003859246.1| - 0.0039 17.5 0.1 0.0071 16.6 0.1 1.5 1 1 0 1 1 1 1 Retroviral aspartyl protease DUF257 PF03192.13 gi|305662958|ref|YP_003859246.1| - 0.03 14.2 1.6 0.066 13.0 0.6 1.8 1 1 1 2 2 2 0 Pyrococcus protein of unknown function, DUF257 DUF1758 PF05585.12 gi|305662958|ref|YP_003859246.1| - 0.097 12.4 0.0 0.11 12.2 0.0 1.3 1 1 0 1 1 1 0 Putative peptidase (DUF1758) Radical_SAM PF04055.21 gi|305662959|ref|YP_003859247.1| - 4.2e-10 40.2 0.5 2.6e-09 37.7 0.1 2.2 1 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|305662959|ref|YP_003859247.1| - 3.2e-07 30.5 0.0 6.9e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|305662959|ref|YP_003859247.1| - 0.00022 21.5 0.0 0.00057 20.2 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|305662959|ref|YP_003859247.1| - 0.012 15.1 0.1 0.025 14.0 0.1 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Polbeta PF18765.1 gi|305662960|ref|YP_003859248.1| - 3.4e-05 23.9 0.0 7.3e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|305662960|ref|YP_003859248.1| - 0.00054 20.2 0.1 0.0014 18.9 0.0 1.8 2 0 0 2 2 2 1 Nucleotidyltransferase domain HTH_24 PF13412.6 gi|305662960|ref|YP_003859248.1| - 0.067 12.8 1.7 0.26 10.9 0.1 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Peptidase_M50 PF02163.22 gi|305662961|ref|YP_003859249.1| - 5.7e-16 58.5 13.3 1.9e-15 56.9 9.5 2.5 2 1 0 2 2 2 1 Peptidase family M50 LapA_dom PF06305.11 gi|305662961|ref|YP_003859249.1| - 4.1 7.3 8.1 6.1 6.7 2.4 3.0 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Ndc1_Nup PF09531.10 gi|305662961|ref|YP_003859249.1| - 7.1 5.2 6.7 0.76 8.4 2.3 1.6 2 0 0 2 2 2 0 Nucleoporin protein Ndc1-Nup Acetyltransf_1 PF00583.25 gi|305662962|ref|YP_003859250.1| - 1.6e-23 83.2 0.1 1.8e-23 83.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|305662962|ref|YP_003859250.1| - 6.7e-17 61.6 0.0 7.6e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|305662962|ref|YP_003859250.1| - 1.1e-16 61.1 0.1 1.4e-16 60.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|305662962|ref|YP_003859250.1| - 2.7e-12 46.5 0.0 3.8e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|305662962|ref|YP_003859250.1| - 1.3e-07 31.7 0.0 3.4e-06 27.2 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|305662962|ref|YP_003859250.1| - 1.3e-06 28.7 0.0 1.7e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|305662962|ref|YP_003859250.1| - 2.8e-05 24.8 0.0 3.2e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|305662962|ref|YP_003859250.1| - 0.00039 20.2 0.0 0.00042 20.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_6 PF13480.7 gi|305662962|ref|YP_003859250.1| - 0.0014 18.8 0.0 0.0022 18.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|305662962|ref|YP_003859250.1| - 0.025 14.3 0.0 0.063 13.0 0.0 1.6 1 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|305662962|ref|YP_003859250.1| - 0.028 14.6 0.0 0.042 14.0 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase MOZ_SAS PF01853.18 gi|305662962|ref|YP_003859250.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 MOZ/SAS family GNAT_acetyltran PF12746.7 gi|305662962|ref|YP_003859250.1| - 0.19 11.3 0.0 0.61 9.6 0.0 1.7 1 1 0 1 1 1 0 GNAT acetyltransferase DNA_pol_B PF00136.21 gi|305662963|ref|YP_003859251.1| - 4.7e-71 239.9 0.0 6.7e-71 239.3 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|305662963|ref|YP_003859251.1| - 2.1e-38 132.3 3.7 2.4e-37 128.9 0.8 2.6 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|305662963|ref|YP_003859251.1| - 3.8e-11 43.3 0.2 1.3e-10 41.5 0.0 2.1 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|305662963|ref|YP_003859251.1| - 1.8e-08 34.4 0.0 3.8e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|305662963|ref|YP_003859251.1| - 0.021 13.7 0.1 0.058 12.2 0.1 1.7 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral DNA_pol_A_exo1 PF01612.20 gi|305662963|ref|YP_003859251.1| - 0.065 12.9 0.0 0.64 9.7 0.0 2.2 1 1 0 1 1 1 0 3'-5' exonuclease AP_endonuc_2 PF01261.24 gi|305662963|ref|YP_003859251.1| - 0.076 12.4 0.0 0.19 11.2 0.0 1.6 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel HEPN PF05168.14 gi|305662963|ref|YP_003859251.1| - 0.24 11.5 1.3 2.3 8.4 0.1 2.6 2 0 0 2 2 2 0 HEPN domain IF2_N PF04760.15 gi|305662963|ref|YP_003859251.1| - 0.52 10.2 2.6 11 5.9 0.2 2.8 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Toprim_4 PF13662.6 gi|305662964|ref|YP_003859252.1| - 5.7e-12 46.0 0.3 1.7e-11 44.4 0.3 1.9 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|305662964|ref|YP_003859252.1| - 1e-07 32.3 0.0 2.5e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|305662964|ref|YP_003859252.1| - 6.5e-06 26.3 2.0 2e-05 24.7 0.1 2.8 3 1 0 3 3 3 1 Toprim domain AAA_lid_10 PF17872.1 gi|305662964|ref|YP_003859252.1| - 0.018 15.2 0.7 0.19 11.9 0.1 2.6 2 0 0 2 2 2 0 AAA lid domain AAA_23 PF13476.6 gi|305662964|ref|YP_003859252.1| - 0.061 13.8 0.4 0.14 12.7 0.4 1.6 1 1 0 1 1 1 0 AAA domain FAP206 PF12018.8 gi|305662964|ref|YP_003859252.1| - 0.09 12.3 0.9 0.14 11.7 0.3 1.5 2 0 0 2 2 2 0 Domain of unknown function HsbA PF12296.8 gi|305662964|ref|YP_003859252.1| - 0.11 12.9 0.2 0.25 11.8 0.2 1.6 1 0 0 1 1 1 0 Hydrophobic surface binding protein A DUF4359 PF14271.6 gi|305662964|ref|YP_003859252.1| - 0.14 12.9 0.6 0.33 11.7 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4359) Alpha_Helical PF18489.1 gi|305662964|ref|YP_003859252.1| - 0.14 12.3 0.8 0.37 11.0 0.3 1.9 2 0 0 2 2 2 0 Alpha helical domain Cauli_AT PF03233.13 gi|305662964|ref|YP_003859252.1| - 2.4 8.1 4.8 6.4 6.7 0.2 2.4 2 0 0 2 2 2 0 Aphid transmission protein tRNA-synt_1b PF00579.25 gi|305662965|ref|YP_003859253.1| - 6.4e-46 157.0 0.0 4.4e-32 111.6 0.0 2.0 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA_synthFbeta PF17759.1 gi|305662966|ref|YP_003859254.1| - 1.6e-30 106.2 0.0 2.4e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|305662966|ref|YP_003859254.1| - 1.1e-13 51.2 2.3 1.1e-11 44.8 0.5 3.2 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|305662966|ref|YP_003859254.1| - 6.3e-09 35.7 0.1 1e-08 35.1 0.1 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|305662966|ref|YP_003859254.1| - 0.042 14.1 0.1 0.35 11.1 0.0 2.3 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain Xpo1 PF08389.12 gi|305662966|ref|YP_003859254.1| - 0.16 12.0 0.1 0.28 11.2 0.1 1.3 1 0 0 1 1 1 0 Exportin 1-like protein tRNA-synt_2d PF01409.20 gi|305662967|ref|YP_003859255.1| - 4.7e-78 262.0 0.0 7.1e-78 261.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|305662967|ref|YP_003859255.1| - 2.7e-07 30.3 0.0 7.7e-06 25.5 0.0 2.2 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|305662967|ref|YP_003859255.1| - 1.9e-05 23.9 1.3 0.024 13.7 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) PheRS_DBD3 PF18553.1 gi|305662967|ref|YP_003859255.1| - 0.0052 17.0 0.1 0.026 14.8 0.0 2.3 2 0 0 2 2 2 1 PheRS DNA binding domain 3 FeoC PF09012.10 gi|305662967|ref|YP_003859255.1| - 0.039 14.0 0.0 0.077 13.1 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator MarR_2 PF12802.7 gi|305662967|ref|YP_003859255.1| - 0.044 13.7 0.4 0.37 10.7 0.0 2.8 5 0 0 5 5 5 0 MarR family Pox_L3_FP4 PF03339.14 gi|305662967|ref|YP_003859255.1| - 0.11 11.5 0.8 0.18 10.8 0.3 1.6 2 0 0 2 2 2 0 Poxvirus L3/FP4 protein TrmB PF01978.19 gi|305662967|ref|YP_003859255.1| - 0.19 11.6 4.3 0.3 11.0 0.2 3.0 4 0 0 4 4 4 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_Tc5 PF03221.16 gi|305662968|ref|YP_003859256.1| - 0.053 13.6 0.0 0.084 12.9 0.0 1.3 1 0 0 1 1 1 0 Tc5 transposase DNA-binding domain PmbA_TldD PF01523.16 gi|305662969|ref|YP_003859257.1| - 5.9e-38 131.3 0.0 7.3e-38 131.0 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF4089 PF13318.6 gi|305662969|ref|YP_003859257.1| - 0.0051 17.2 0.0 0.015 15.8 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF4089) SNO PF01174.19 gi|305662970|ref|YP_003859258.1| - 3.8e-47 160.6 0.0 4.4e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|305662970|ref|YP_003859258.1| - 1.4e-10 41.1 0.0 2.5e-10 40.3 0.0 1.4 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|305662970|ref|YP_003859258.1| - 7.6e-07 29.1 0.2 1.3e-05 25.1 0.2 2.1 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|305662970|ref|YP_003859258.1| - 8.7e-07 28.8 0.0 1.1e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|305662970|ref|YP_003859258.1| - 0.0087 15.9 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family SOR_SNZ PF01680.17 gi|305662971|ref|YP_003859259.1| - 4.6e-97 323.8 3.6 6.1e-97 323.4 3.6 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|305662971|ref|YP_003859259.1| - 1.1e-06 28.2 4.8 1.1e-05 24.9 0.2 2.4 3 0 0 3 3 3 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|305662971|ref|YP_003859259.1| - 0.00015 21.0 0.4 0.042 12.9 0.0 2.4 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.24 gi|305662971|ref|YP_003859259.1| - 0.00018 21.1 0.4 0.36 10.4 0.1 2.6 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.21 gi|305662971|ref|YP_003859259.1| - 0.0023 17.4 0.5 0.53 9.7 0.2 3.0 2 1 1 3 3 3 2 Histidine biosynthesis protein TetR_C_27 PF17935.1 gi|305662971|ref|YP_003859259.1| - 0.0041 17.1 0.2 0.016 15.2 0.0 1.9 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain NMO PF03060.15 gi|305662971|ref|YP_003859259.1| - 0.0046 16.4 1.7 0.012 15.1 0.1 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|305662971|ref|YP_003859259.1| - 0.011 14.9 0.9 0.33 10.1 0.0 2.6 3 0 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|305662971|ref|YP_003859259.1| - 0.035 13.3 0.0 0.4 9.8 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase NUDIX PF00293.28 gi|305662972|ref|YP_003859260.1| - 1.9e-20 73.3 0.0 2.2e-20 73.0 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|305662972|ref|YP_003859260.1| - 0.049 13.1 0.0 0.82 9.1 0.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4916) NUDIX_4 PF14815.6 gi|305662972|ref|YP_003859260.1| - 0.14 12.2 0.0 0.21 11.6 0.0 1.3 1 1 0 1 1 1 0 NUDIX domain Herpes_U44 PF04533.13 gi|305662973|ref|YP_003859261.1| - 0.045 13.4 0.1 0.065 12.8 0.1 1.3 1 0 0 1 1 1 0 Herpes virus U44 protein Nup54 PF13874.6 gi|305662974|ref|YP_003859262.1| - 9e-05 22.6 1.4 0.00018 21.6 1.4 1.5 1 0 0 1 1 1 1 Nucleoporin complex subunit 54 DUF1664 PF07889.12 gi|305662974|ref|YP_003859262.1| - 0.00018 21.5 0.7 0.12 12.4 0.1 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Occludin_ELL PF07303.13 gi|305662974|ref|YP_003859262.1| - 0.00058 20.5 5.6 0.00073 20.2 2.0 2.6 2 1 0 2 2 2 1 Occludin homology domain PAXNEB PF05625.11 gi|305662974|ref|YP_003859262.1| - 0.0033 16.6 0.0 0.0058 15.8 0.0 1.5 1 0 0 1 1 1 1 PAXNEB protein RmuC PF02646.16 gi|305662974|ref|YP_003859262.1| - 0.0052 16.0 2.6 0.027 13.6 0.3 2.5 2 1 1 3 3 3 2 RmuC family KxDL PF10241.9 gi|305662974|ref|YP_003859262.1| - 0.0057 16.9 1.6 0.55 10.5 0.2 2.7 1 1 0 2 2 2 1 Uncharacterized conserved protein Exonuc_VII_L PF02601.15 gi|305662974|ref|YP_003859262.1| - 0.0088 15.6 1.8 0.016 14.8 1.7 1.5 1 1 0 1 1 1 1 Exonuclease VII, large subunit Tropomyosin_1 PF12718.7 gi|305662974|ref|YP_003859262.1| - 0.0089 16.2 1.7 0.0089 16.2 1.7 2.6 2 1 0 2 2 2 1 Tropomyosin like TMPIT PF07851.13 gi|305662974|ref|YP_003859262.1| - 0.017 14.4 1.4 0.022 14.0 0.1 1.7 2 0 0 2 2 2 0 TMPIT-like protein FliD_C PF07195.12 gi|305662974|ref|YP_003859262.1| - 0.023 14.1 0.3 2.1 7.7 0.1 2.4 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 C-terminus FapA PF03961.13 gi|305662974|ref|YP_003859262.1| - 0.05 12.2 3.1 0.048 12.3 0.2 2.0 2 0 0 2 2 2 0 Flagellar Assembly Protein A SOAR PF16533.5 gi|305662974|ref|YP_003859262.1| - 0.054 13.5 3.3 3.5 7.6 0.3 3.1 1 1 3 4 4 4 0 STIM1 Orai1-activating region V_ATPase_I PF01496.19 gi|305662974|ref|YP_003859262.1| - 0.062 11.2 4.1 0.069 11.1 4.1 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Phage_GPO PF05929.11 gi|305662974|ref|YP_003859262.1| - 0.11 12.1 0.7 0.32 10.6 0.1 1.8 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase OrfB_IS605 PF01385.19 gi|305662974|ref|YP_003859262.1| - 0.11 12.7 1.1 1.3 9.3 0.3 2.5 2 0 0 2 2 2 0 Probable transposase Surface_antigen PF11054.8 gi|305662974|ref|YP_003859262.1| - 0.16 11.6 0.0 0.23 11.1 0.0 1.1 1 0 0 1 1 1 0 Sporozoite TA4 surface antigen Laminin_II PF06009.12 gi|305662974|ref|YP_003859262.1| - 0.19 11.7 1.1 0.43 10.6 0.0 1.9 2 0 0 2 2 2 0 Laminin Domain II DUF4795 PF16043.5 gi|305662974|ref|YP_003859262.1| - 0.29 10.7 5.7 1.1 8.8 2.5 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4795) DUF16 PF01519.16 gi|305662974|ref|YP_003859262.1| - 0.47 11.0 4.5 0.95 10.0 2.3 2.4 2 1 1 3 3 3 0 Protein of unknown function DUF16 HSBP1 PF06825.12 gi|305662974|ref|YP_003859262.1| - 0.49 10.3 5.3 0.65 9.9 0.9 2.7 1 1 1 2 2 2 0 Heat shock factor binding protein 1 TRPM_tetra PF16519.5 gi|305662974|ref|YP_003859262.1| - 4 7.6 9.3 18 5.5 0.9 3.5 1 1 1 3 3 3 0 Tetramerisation domain of TRPM Vac_Fusion PF02346.16 gi|305662974|ref|YP_003859262.1| - 4.6 6.9 15.8 16 5.2 3.4 4.3 2 1 1 4 4 4 0 Chordopoxvirus multifunctional envelope protein A27 DUF4164 PF13747.6 gi|305662974|ref|YP_003859262.1| - 9.8 6.5 18.1 2.2 8.6 7.1 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) DUF2139 PF09910.9 gi|305662975|ref|YP_003859263.1| - 8.5e-35 120.5 0.1 1.3e-34 119.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) SBP_bac_5 PF00496.22 gi|305662976|ref|YP_003859264.1| - 2.8e-48 164.8 3.8 6e-48 163.7 3.8 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PetM PF08041.11 gi|305662976|ref|YP_003859264.1| - 0.054 13.1 2.2 0.11 12.1 2.2 1.5 1 0 0 1 1 1 0 PetM family of cytochrome b6f complex subunit 7 ABC_tran PF00005.27 gi|305662977|ref|YP_003859265.1| - 2.8e-30 105.6 0.0 3.7e-30 105.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305662977|ref|YP_003859265.1| - 7.3e-06 26.4 0.0 3.6e-05 24.2 0.1 2.0 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|305662977|ref|YP_003859265.1| - 5.2e-05 23.2 3.6 0.0022 17.8 1.8 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|305662977|ref|YP_003859265.1| - 5.2e-05 23.7 0.0 8.4e-05 23.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|305662977|ref|YP_003859265.1| - 0.00023 21.4 0.5 0.0013 19.1 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|305662977|ref|YP_003859265.1| - 0.0042 17.1 0.0 0.0082 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) PRK PF00485.18 gi|305662977|ref|YP_003859265.1| - 0.015 15.1 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.6 gi|305662977|ref|YP_003859265.1| - 0.017 14.9 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|305662977|ref|YP_003859265.1| - 0.018 14.2 0.0 0.04 13.1 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain Zeta_toxin PF06414.12 gi|305662977|ref|YP_003859265.1| - 0.02 14.2 0.0 0.031 13.5 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|305662977|ref|YP_003859265.1| - 0.034 14.5 0.0 0.085 13.2 0.0 1.7 1 1 0 1 1 1 0 RNA helicase G-alpha PF00503.20 gi|305662977|ref|YP_003859265.1| - 0.048 12.8 0.0 0.058 12.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit TsaE PF02367.17 gi|305662977|ref|YP_003859265.1| - 0.077 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_15 PF13175.6 gi|305662977|ref|YP_003859265.1| - 0.078 12.7 0.1 0.21 11.2 0.0 1.6 1 1 0 2 2 2 0 AAA ATPase domain DUF87 PF01935.17 gi|305662977|ref|YP_003859265.1| - 0.081 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain BCA_ABC_TP_C PF12399.8 gi|305662977|ref|YP_003859265.1| - 0.082 12.9 0.4 0.15 12.0 0.0 1.7 2 0 0 2 2 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_19 PF13245.6 gi|305662977|ref|YP_003859265.1| - 0.098 13.0 0.2 0.67 10.3 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|305662977|ref|YP_003859265.1| - 0.1 13.0 0.0 0.52 10.7 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|305662977|ref|YP_003859265.1| - 0.15 11.8 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|305662977|ref|YP_003859265.1| - 0.18 12.3 0.0 0.33 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|305662977|ref|YP_003859265.1| - 0.19 11.9 0.0 0.47 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|305662978|ref|YP_003859266.1| - 1.7e-25 90.2 0.0 2.3e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305662978|ref|YP_003859266.1| - 5.3e-19 68.5 0.2 1.2e-18 67.3 0.1 1.7 2 0 0 2 2 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|305662978|ref|YP_003859266.1| - 2.3e-06 27.7 0.1 0.0023 17.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|305662978|ref|YP_003859266.1| - 0.0023 18.3 0.1 0.017 15.5 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|305662978|ref|YP_003859266.1| - 0.0032 17.7 0.5 0.022 15.0 0.5 2.1 1 1 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|305662978|ref|YP_003859266.1| - 0.0037 16.7 0.5 0.0083 15.6 0.0 1.7 2 1 0 2 2 2 1 PhoH-like protein SMC_N PF02463.19 gi|305662978|ref|YP_003859266.1| - 0.0038 16.7 0.1 0.019 14.4 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain NACHT PF05729.12 gi|305662978|ref|YP_003859266.1| - 0.006 16.5 0.0 0.019 14.9 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.6 gi|305662978|ref|YP_003859266.1| - 0.0077 16.6 0.1 0.014 15.8 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|305662978|ref|YP_003859266.1| - 0.0086 15.3 0.1 0.015 14.5 0.1 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_23 PF13476.6 gi|305662978|ref|YP_003859266.1| - 0.029 14.9 0.0 0.099 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|305662978|ref|YP_003859266.1| - 0.043 14.2 0.0 0.086 13.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PRK PF00485.18 gi|305662978|ref|YP_003859266.1| - 0.047 13.4 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RuvB_N PF05496.12 gi|305662978|ref|YP_003859266.1| - 0.049 13.4 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|305662978|ref|YP_003859266.1| - 0.054 13.2 0.0 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase PF06745.13 gi|305662978|ref|YP_003859266.1| - 0.055 12.8 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_25 PF13481.6 gi|305662978|ref|YP_003859266.1| - 0.056 13.0 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|305662978|ref|YP_003859266.1| - 0.071 13.0 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|305662978|ref|YP_003859266.1| - 0.076 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain DUF87 PF01935.17 gi|305662978|ref|YP_003859266.1| - 0.094 12.8 0.0 0.7 9.9 0.0 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_18 PF13238.6 gi|305662978|ref|YP_003859266.1| - 0.11 13.1 0.0 0.17 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|305662978|ref|YP_003859266.1| - 0.14 12.1 0.0 0.35 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|305662978|ref|YP_003859266.1| - 0.18 12.0 0.0 0.32 11.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|305662979|ref|YP_003859267.1| - 1.6e-22 80.2 24.7 1.6e-22 80.2 24.7 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|305662979|ref|YP_003859267.1| - 0.1 12.6 0.1 0.1 12.6 0.1 4.4 5 1 1 6 6 6 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|305662980|ref|YP_003859268.1| - 5e-41 140.5 14.8 5e-41 140.5 14.8 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component FliG_M PF14841.6 gi|305662980|ref|YP_003859268.1| - 0.059 13.6 0.1 0.24 11.6 0.1 2.0 1 1 0 1 1 1 0 FliG middle domain Macro PF01661.21 gi|305662981|ref|YP_003859269.1| - 2.4e-27 95.3 0.2 2.9e-27 95.0 0.2 1.1 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.6 gi|305662981|ref|YP_003859269.1| - 7.7e-07 28.7 0.5 4.3e-06 26.3 0.5 2.0 1 1 0 1 1 1 1 Macro-like domain ATP_bind_3 PF01171.20 gi|305662983|ref|YP_003859271.1| - 2.3e-16 60.1 0.0 4.9e-16 59.0 0.0 1.5 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|305662983|ref|YP_003859271.1| - 1.3e-05 25.3 0.0 8.2e-05 22.7 0.0 2.1 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.15 gi|305662983|ref|YP_003859271.1| - 0.0027 17.3 2.9 0.0027 17.3 2.9 2.7 3 0 0 3 3 3 1 RecR protein QueC PF06508.13 gi|305662983|ref|YP_003859271.1| - 0.025 14.1 0.3 0.049 13.1 0.0 1.6 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PAP_RNA-bind PF04926.15 gi|305662983|ref|YP_003859271.1| - 0.12 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Poly(A) polymerase predicted RNA binding domain zn-ribbon_14 PF16503.5 gi|305662983|ref|YP_003859271.1| - 6.1 6.4 17.2 0.042 13.3 4.9 3.1 4 0 0 4 4 4 0 Zinc-ribbon DUF4346 PF14251.6 gi|305662984|ref|YP_003859272.1| - 0.04 13.9 0.0 0.086 12.9 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4346) SPOUT_MTase_2 PF14419.6 gi|305662985|ref|YP_003859273.1| - 7.3e-76 253.3 0.7 1.6e-75 252.2 0.7 1.6 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|305662985|ref|YP_003859273.1| - 1.3e-24 87.0 2.1 1.7e-24 86.6 0.8 1.8 2 0 0 2 2 2 1 THUMP domain DUF531 PF04407.12 gi|305662985|ref|YP_003859273.1| - 0.015 15.4 0.0 0.025 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF531) DUF2148 PF09918.9 gi|305662985|ref|YP_003859273.1| - 0.087 12.9 0.1 0.2 11.7 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) Lactamase_B_2 PF12706.7 gi|305662987|ref|YP_003859275.1| - 6.5e-16 58.4 0.0 8.1e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|305662987|ref|YP_003859275.1| - 1.5e-08 34.9 0.1 3.1e-08 33.9 0.1 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|305662987|ref|YP_003859275.1| - 0.0062 16.4 0.0 0.012 15.5 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HhH-GPD PF00730.25 gi|305662990|ref|YP_003859278.1| - 2.3e-06 28.0 0.0 4.8e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HTH_3 PF01381.22 gi|305662990|ref|YP_003859278.1| - 0.082 13.0 0.1 13 5.9 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix DUF3782 PF12644.7 gi|305662991|ref|YP_003859279.1| - 2.7e-10 40.3 8.0 5.8e-09 36.0 8.0 2.8 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|305662991|ref|YP_003859279.1| - 4.2e-07 29.8 1.9 4.2e-07 29.8 1.9 2.4 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily ELMO_CED12 PF04727.13 gi|305662991|ref|YP_003859279.1| - 0.012 15.8 0.0 0.016 15.3 0.0 1.1 1 0 0 1 1 1 0 ELMO/CED-12 family Sec2p PF06428.11 gi|305662991|ref|YP_003859279.1| - 0.029 14.3 0.6 0.077 13.0 0.6 1.7 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p KxDL PF10241.9 gi|305662991|ref|YP_003859279.1| - 0.088 13.1 0.9 0.32 11.3 0.2 2.4 2 2 0 2 2 2 0 Uncharacterized conserved protein SlyX PF04102.12 gi|305662991|ref|YP_003859279.1| - 0.12 13.1 0.5 3.5 8.3 0.1 2.5 1 1 1 2 2 2 0 SlyX HTH_11 PF08279.12 gi|305662993|ref|YP_003859281.1| - 3.6e-06 26.8 0.2 1.6e-05 24.8 0.0 2.2 2 0 0 2 2 2 1 HTH domain FaeA PF04703.12 gi|305662993|ref|YP_003859281.1| - 0.00022 21.5 0.4 0.00099 19.4 0.0 2.2 3 0 0 3 3 1 1 FaeA-like protein MarR PF01047.22 gi|305662993|ref|YP_003859281.1| - 0.0014 18.5 0.1 0.0057 16.6 0.0 2.1 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|305662993|ref|YP_003859281.1| - 0.0023 17.8 0.0 0.0063 16.4 0.0 1.8 1 0 0 1 1 1 1 MarR family Med30 PF11315.8 gi|305662993|ref|YP_003859281.1| - 0.0024 18.1 1.7 0.01 16.0 0.6 2.1 1 1 0 2 2 2 1 Mediator complex subunit 30 Rrf2 PF02082.20 gi|305662993|ref|YP_003859281.1| - 0.0024 18.2 0.3 0.0084 16.4 0.0 2.0 2 1 1 3 3 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|305662993|ref|YP_003859281.1| - 0.0035 17.3 0.0 0.01 15.8 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain ACR_tran PF00873.19 gi|305662993|ref|YP_003859281.1| - 0.0036 15.0 1.8 0.0042 14.8 1.8 1.1 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family TrmB PF01978.19 gi|305662993|ref|YP_003859281.1| - 0.0042 16.9 0.1 0.012 15.5 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|305662993|ref|YP_003859281.1| - 0.0043 17.1 0.2 0.018 15.1 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.17 gi|305662993|ref|YP_003859281.1| - 0.0044 16.8 1.8 0.024 14.5 0.0 2.6 2 1 1 3 3 3 1 TFIIE alpha subunit HTH_24 PF13412.6 gi|305662993|ref|YP_003859281.1| - 0.005 16.4 0.1 0.014 14.9 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AAA_13 PF13166.6 gi|305662993|ref|YP_003859281.1| - 0.0079 14.9 4.8 0.0095 14.6 4.8 1.0 1 0 0 1 1 1 1 AAA domain Filo_VP35 PF02097.15 gi|305662993|ref|YP_003859281.1| - 0.013 14.6 2.9 0.086 11.9 0.6 2.1 2 0 0 2 2 2 0 Filoviridae VP35 FlaC_arch PF05377.11 gi|305662993|ref|YP_003859281.1| - 0.026 14.9 1.1 0.026 14.9 1.1 3.1 1 1 1 3 3 3 0 Flagella accessory protein C (FlaC) dCache_1 PF02743.18 gi|305662993|ref|YP_003859281.1| - 0.028 14.2 1.6 0.12 12.1 1.7 1.9 2 0 0 2 2 2 0 Cache domain Fungal_trans_2 PF11951.8 gi|305662993|ref|YP_003859281.1| - 0.031 13.1 2.5 0.042 12.7 2.5 1.1 1 0 0 1 1 1 0 Fungal specific transcription factor domain Cep57_MT_bd PF06657.13 gi|305662993|ref|YP_003859281.1| - 0.036 14.5 0.6 0.075 13.5 0.6 1.6 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 TFIIE_beta PF02186.15 gi|305662993|ref|YP_003859281.1| - 0.036 14.4 1.3 0.5 10.7 0.0 2.8 3 1 0 3 3 3 0 TFIIE beta subunit core domain HTH_23 PF13384.6 gi|305662993|ref|YP_003859281.1| - 0.037 13.8 1.8 0.092 12.6 0.0 2.5 3 0 0 3 3 2 0 Homeodomain-like domain Endotoxin_N PF03945.14 gi|305662993|ref|YP_003859281.1| - 0.037 13.7 0.1 0.056 13.2 0.1 1.4 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain GntR PF00392.21 gi|305662993|ref|YP_003859281.1| - 0.038 13.6 0.1 0.19 11.4 0.0 2.2 2 0 0 2 2 1 0 Bacterial regulatory proteins, gntR family DUF1803 PF08820.10 gi|305662993|ref|YP_003859281.1| - 0.044 13.8 0.0 0.15 12.1 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1803) Med9 PF07544.13 gi|305662993|ref|YP_003859281.1| - 0.05 13.7 3.9 0.044 13.9 2.1 2.0 2 0 0 2 2 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF3867 PF12983.7 gi|305662993|ref|YP_003859281.1| - 0.061 13.4 1.2 0.53 10.3 1.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3867) Adeno_E3B PF03376.14 gi|305662993|ref|YP_003859281.1| - 0.066 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Adenovirus E3B protein Allexi_40kDa PF05549.11 gi|305662993|ref|YP_003859281.1| - 0.069 12.7 3.1 0.11 11.9 2.0 1.6 1 1 0 1 1 1 0 Allexivirus 40kDa protein HTH_5 PF01022.20 gi|305662993|ref|YP_003859281.1| - 0.07 13.0 0.0 0.24 11.3 0.0 1.9 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family Baculo_PEP_C PF04513.12 gi|305662993|ref|YP_003859281.1| - 0.071 13.2 8.2 0.35 10.9 8.2 1.9 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin-6_N PF09177.11 gi|305662993|ref|YP_003859281.1| - 0.072 13.6 4.3 0.23 12.0 4.3 2.0 1 1 0 1 1 1 0 Syntaxin 6, N-terminal MitMem_reg PF13012.6 gi|305662993|ref|YP_003859281.1| - 0.1 13.0 2.4 0.21 12.0 2.3 1.7 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function AKNA PF12443.8 gi|305662993|ref|YP_003859281.1| - 0.11 13.1 1.2 0.21 12.2 1.2 1.5 1 0 0 1 1 1 0 AT-hook-containing transcription factor HrcA_DNA-bdg PF03444.15 gi|305662993|ref|YP_003859281.1| - 0.15 11.7 1.0 0.58 9.8 0.0 2.4 2 1 1 3 3 3 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Prominin PF05478.11 gi|305662993|ref|YP_003859281.1| - 0.16 9.9 3.4 0.26 9.2 3.3 1.4 1 1 0 1 1 1 0 Prominin GatB_Yqey PF02637.18 gi|305662993|ref|YP_003859281.1| - 0.18 11.7 5.8 0.38 10.6 5.8 1.5 1 0 0 1 1 1 0 GatB domain DUF1664 PF07889.12 gi|305662993|ref|YP_003859281.1| - 0.19 11.8 5.5 0.14 12.2 2.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Prefoldin_2 PF01920.20 gi|305662993|ref|YP_003859281.1| - 0.19 11.7 6.0 0.095 12.7 2.2 2.4 2 1 0 2 2 2 0 Prefoldin subunit DUF3347 PF11827.8 gi|305662993|ref|YP_003859281.1| - 0.24 11.6 1.3 0.45 10.7 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) Flagellin_C PF00700.21 gi|305662993|ref|YP_003859281.1| - 0.43 11.0 6.0 0.38 11.1 3.4 2.2 2 1 0 2 2 2 0 Bacterial flagellin C-terminal helical region CorA PF01544.18 gi|305662993|ref|YP_003859281.1| - 0.44 9.8 6.0 0.76 9.0 5.9 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Fib_alpha PF08702.10 gi|305662993|ref|YP_003859281.1| - 1.4 9.1 7.3 0.96 9.6 4.2 2.0 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family YgaB PF14182.6 gi|305662993|ref|YP_003859281.1| - 1.4 9.3 5.6 3.4 8.1 3.4 2.6 2 1 0 2 2 2 0 YgaB-like protein DUF5446 PF17522.2 gi|305662993|ref|YP_003859281.1| - 3.1 8.0 6.8 0.76 10.0 1.3 2.6 1 1 1 2 2 2 0 Family of unknown function (DUF5446) Tnp_22_trimer PF17489.2 gi|305662993|ref|YP_003859281.1| - 4.1 7.5 8.5 0.4 10.7 1.2 2.6 2 0 0 2 2 2 0 L1 transposable element trimerization domain FliT PF05400.13 gi|305662993|ref|YP_003859281.1| - 7.5 7.4 9.8 13 6.6 1.8 2.6 1 1 1 2 2 2 0 Flagellar protein FliT DUF3782 PF12644.7 gi|305662994|ref|YP_003859282.1| - 1.6e-25 89.1 14.9 6.9e-25 87.0 0.4 3.5 1 1 2 3 3 3 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|305662994|ref|YP_003859282.1| - 2.8e-15 56.0 1.6 2.8e-15 56.0 1.6 1.9 2 0 0 2 2 1 1 PD-(D/E)XK nuclease superfamily Tropomyosin PF00261.20 gi|305662994|ref|YP_003859282.1| - 9e-05 22.0 21.2 0.00014 21.3 21.2 1.3 1 0 0 1 1 1 1 Tropomyosin Vac_Fusion PF02346.16 gi|305662994|ref|YP_003859282.1| - 0.00096 18.7 12.7 0.4 10.3 0.2 3.7 1 1 2 3 3 3 2 Chordopoxvirus multifunctional envelope protein A27 FapA PF03961.13 gi|305662994|ref|YP_003859282.1| - 0.0011 17.7 7.7 0.0015 17.2 7.7 1.3 1 0 0 1 1 1 1 Flagellar Assembly Protein A XhlA PF10779.9 gi|305662994|ref|YP_003859282.1| - 0.0012 19.0 12.8 0.026 14.7 2.0 3.3 1 1 1 3 3 3 2 Haemolysin XhlA BLOC1_2 PF10046.9 gi|305662994|ref|YP_003859282.1| - 0.0012 19.1 6.2 0.0016 18.7 2.6 2.4 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 ERM PF00769.19 gi|305662994|ref|YP_003859282.1| - 0.0016 18.3 14.0 0.0024 17.7 14.0 1.2 1 0 0 1 1 1 1 Ezrin/radixin/moesin family Spc7 PF08317.11 gi|305662994|ref|YP_003859282.1| - 0.0018 17.2 13.5 0.0029 16.5 11.6 1.6 1 1 0 1 1 1 1 Spc7 kinetochore protein IFT57 PF10498.9 gi|305662994|ref|YP_003859282.1| - 0.0025 16.9 9.2 0.0039 16.2 9.2 1.3 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 Tropomyosin_1 PF12718.7 gi|305662994|ref|YP_003859282.1| - 0.0027 17.9 5.6 0.0027 17.9 5.6 2.3 1 1 1 2 2 2 1 Tropomyosin like DUF16 PF01519.16 gi|305662994|ref|YP_003859282.1| - 0.003 18.0 12.9 0.024 15.1 3.8 2.3 1 1 1 2 2 2 2 Protein of unknown function DUF16 DUF1664 PF07889.12 gi|305662994|ref|YP_003859282.1| - 0.0035 17.4 5.3 0.0041 17.1 2.3 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Exonuc_VII_L PF02601.15 gi|305662994|ref|YP_003859282.1| - 0.005 16.4 2.6 0.007 16.0 2.6 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit EzrA PF06160.12 gi|305662994|ref|YP_003859282.1| - 0.0064 14.7 12.1 0.013 13.7 12.1 1.4 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA DUF1043 PF06295.12 gi|305662994|ref|YP_003859282.1| - 0.0066 16.5 7.0 0.023 14.7 5.4 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1043) CLZ PF16526.5 gi|305662994|ref|YP_003859282.1| - 0.0069 16.7 14.1 0.043 14.2 5.2 2.5 1 1 1 2 2 2 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ZapB PF06005.12 gi|305662994|ref|YP_003859282.1| - 0.0076 16.7 22.5 0.21 12.1 8.4 2.5 1 1 1 2 2 2 2 Cell division protein ZapB AAA_13 PF13166.6 gi|305662994|ref|YP_003859282.1| - 0.012 14.4 5.7 0.016 13.9 5.7 1.1 1 0 0 1 1 1 0 AAA domain Nup54 PF13874.6 gi|305662994|ref|YP_003859282.1| - 0.015 15.4 11.1 0.019 15.1 8.2 2.2 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Leu_zip PF15294.6 gi|305662994|ref|YP_003859282.1| - 0.019 14.5 11.7 0.045 13.3 10.8 1.9 1 1 1 2 2 2 0 Leucine zipper ABC_tran_CTD PF16326.5 gi|305662994|ref|YP_003859282.1| - 0.019 15.2 13.8 0.019 15.2 13.8 3.4 1 1 2 3 3 3 0 ABC transporter C-terminal domain DUF1465 PF07323.12 gi|305662994|ref|YP_003859282.1| - 0.02 14.7 6.4 0.083 12.7 1.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) DUF4988 PF16378.5 gi|305662994|ref|YP_003859282.1| - 0.025 14.2 1.6 0.92 9.1 0.2 2.8 1 1 2 3 3 3 0 Domain of unknown function DUF724 PF05266.14 gi|305662994|ref|YP_003859282.1| - 0.033 14.0 10.6 0.04 13.7 9.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Occludin_ELL PF07303.13 gi|305662994|ref|YP_003859282.1| - 0.034 14.9 7.0 0.39 11.5 3.2 2.3 1 1 1 2 2 2 0 Occludin homology domain TelA PF05816.11 gi|305662994|ref|YP_003859282.1| - 0.037 13.1 4.3 0.064 12.3 4.3 1.4 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) TMPIT PF07851.13 gi|305662994|ref|YP_003859282.1| - 0.04 13.2 4.2 0.054 12.7 4.2 1.3 1 0 0 1 1 1 0 TMPIT-like protein SlyX PF04102.12 gi|305662994|ref|YP_003859282.1| - 0.041 14.5 1.9 0.041 14.5 1.9 3.4 1 1 3 4 4 4 0 SlyX Ring_hydroxyl_B PF00866.18 gi|305662994|ref|YP_003859282.1| - 0.042 13.9 1.7 0.067 13.3 0.9 1.7 1 1 0 1 1 1 0 Ring hydroxylating beta subunit HemX PF04375.14 gi|305662994|ref|YP_003859282.1| - 0.046 13.0 4.2 0.097 11.9 3.9 1.6 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DASH_Dam1 PF08653.10 gi|305662994|ref|YP_003859282.1| - 0.053 13.3 1.2 25 4.8 0.1 3.8 1 1 3 4 4 4 0 DASH complex subunit Dam1 PI3K_P85_iSH2 PF16454.5 gi|305662994|ref|YP_003859282.1| - 0.054 13.1 10.8 0.13 11.9 10.8 1.6 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Jnk-SapK_ap_N PF09744.9 gi|305662994|ref|YP_003859282.1| - 0.055 13.7 16.2 0.11 12.7 7.8 2.2 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 COG2 PF06148.11 gi|305662994|ref|YP_003859282.1| - 0.057 13.5 7.8 1.2 9.2 2.3 2.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 V_ATPase_I PF01496.19 gi|305662994|ref|YP_003859282.1| - 0.062 11.2 2.8 0.092 10.6 2.8 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HMMR_N PF15905.5 gi|305662994|ref|YP_003859282.1| - 0.063 12.7 9.5 0.095 12.2 9.5 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DUF3450 PF11932.8 gi|305662994|ref|YP_003859282.1| - 0.073 12.4 9.2 0.22 10.8 9.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DUF812 PF05667.11 gi|305662994|ref|YP_003859282.1| - 0.081 11.8 10.7 0.11 11.4 10.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) HAUS-augmin3 PF14932.6 gi|305662994|ref|YP_003859282.1| - 0.086 12.4 9.1 0.046 13.3 7.4 1.4 2 0 0 2 2 1 0 HAUS augmin-like complex subunit 3 ATG16 PF08614.11 gi|305662994|ref|YP_003859282.1| - 0.089 13.0 9.4 0.17 12.1 9.4 1.5 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) MscS_porin PF12795.7 gi|305662994|ref|YP_003859282.1| - 0.091 12.3 8.1 0.22 11.0 8.1 1.6 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain Mod_r PF07200.13 gi|305662994|ref|YP_003859282.1| - 0.093 12.8 9.6 0.25 11.5 9.7 1.6 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein TPR_MLP1_2 PF07926.12 gi|305662994|ref|YP_003859282.1| - 0.095 12.8 13.1 0.18 11.9 13.1 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF3552 PF12072.8 gi|305662994|ref|YP_003859282.1| - 0.1 12.0 21.5 0.67 9.3 11.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) RmuC PF02646.16 gi|305662994|ref|YP_003859282.1| - 0.12 11.5 7.1 1.3 8.1 1.5 2.2 1 1 1 2 2 2 0 RmuC family GAS PF13851.6 gi|305662994|ref|YP_003859282.1| - 0.14 11.5 12.8 0.29 10.5 12.8 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Med4 PF10018.9 gi|305662994|ref|YP_003859282.1| - 0.15 11.7 11.5 1.2 8.8 3.3 2.9 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 TMCO5 PF14992.6 gi|305662994|ref|YP_003859282.1| - 0.15 11.6 13.5 0.24 10.9 13.5 1.2 1 0 0 1 1 1 0 TMCO5 family Phage_GPO PF05929.11 gi|305662994|ref|YP_003859282.1| - 0.16 11.6 2.1 0.23 11.0 2.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase ADIP PF11559.8 gi|305662994|ref|YP_003859282.1| - 0.16 12.0 9.8 0.32 11.1 1.4 1.9 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF2959 PF11172.8 gi|305662994|ref|YP_003859282.1| - 0.18 11.9 5.8 0.28 11.3 4.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2959) DUF4375 PF14300.6 gi|305662994|ref|YP_003859282.1| - 0.23 11.7 3.4 4.7 7.5 3.4 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4375) Myosin_tail_1 PF01576.19 gi|305662994|ref|YP_003859282.1| - 0.24 9.2 19.6 0.35 8.6 19.6 1.2 1 0 0 1 1 1 0 Myosin tail KASH_CCD PF14662.6 gi|305662994|ref|YP_003859282.1| - 0.29 10.9 16.5 2.4 8.0 16.5 2.1 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Tektin PF03148.14 gi|305662994|ref|YP_003859282.1| - 0.31 9.8 11.1 0.61 8.8 7.9 2.0 1 1 1 2 2 2 0 Tektin family Uds1 PF15456.6 gi|305662994|ref|YP_003859282.1| - 0.34 11.1 6.6 0.73 10.0 6.0 1.9 1 1 0 1 1 1 0 Up-regulated During Septation SKA2 PF16740.5 gi|305662994|ref|YP_003859282.1| - 0.35 10.7 10.9 1.6 8.5 2.5 3.1 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 2 Laminin_II PF06009.12 gi|305662994|ref|YP_003859282.1| - 0.37 10.8 4.7 2.3 8.2 4.7 2.1 1 1 0 1 1 1 0 Laminin Domain II KxDL PF10241.9 gi|305662994|ref|YP_003859282.1| - 0.45 10.8 9.0 5.2 7.4 1.8 3.0 1 1 2 3 3 3 0 Uncharacterized conserved protein Fib_alpha PF08702.10 gi|305662994|ref|YP_003859282.1| - 0.45 10.7 6.4 1.4 9.1 6.4 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Spectrin PF00435.21 gi|305662994|ref|YP_003859282.1| - 0.49 10.9 10.9 12 6.5 10.9 2.4 1 1 0 1 1 1 0 Spectrin repeat Snapin_Pallidin PF14712.6 gi|305662994|ref|YP_003859282.1| - 0.52 10.8 9.6 0.49 10.8 4.3 2.4 1 1 1 2 2 2 0 Snapin/Pallidin Fe-S_assembly PF04384.13 gi|305662994|ref|YP_003859282.1| - 0.56 10.9 2.4 38 5.0 0.1 2.9 2 1 1 3 3 2 0 Iron-sulphur cluster assembly ApoLp-III PF07464.11 gi|305662994|ref|YP_003859282.1| - 0.6 10.2 4.2 2.7 8.1 0.1 2.3 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF3287 PF11690.8 gi|305662994|ref|YP_003859282.1| - 0.6 9.8 10.5 4.4 7.0 2.8 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3287) Sec34 PF04136.15 gi|305662994|ref|YP_003859282.1| - 0.6 10.0 5.3 3.8 7.4 0.8 2.2 1 1 1 2 2 2 0 Sec34-like family DUF1690 PF07956.11 gi|305662994|ref|YP_003859282.1| - 0.67 10.4 8.5 1.1 9.6 8.5 1.4 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) bZIP_2 PF07716.15 gi|305662994|ref|YP_003859282.1| - 0.7 10.0 18.7 2.2 8.4 1.9 3.5 1 1 3 4 4 4 0 Basic region leucine zipper DUF1515 PF07439.11 gi|305662994|ref|YP_003859282.1| - 0.79 9.8 6.8 0.23 11.5 2.3 2.4 2 1 1 3 3 2 0 Protein of unknown function (DUF1515) Troponin PF00992.20 gi|305662994|ref|YP_003859282.1| - 0.8 10.0 19.4 30 4.9 19.3 2.5 1 1 0 1 1 1 0 Troponin DUF4795 PF16043.5 gi|305662994|ref|YP_003859282.1| - 0.89 9.1 9.6 11 5.6 9.6 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) bZIP_1 PF00170.21 gi|305662994|ref|YP_003859282.1| - 1.1 9.4 12.9 2.7 8.1 2.6 3.0 2 1 1 3 3 2 0 bZIP transcription factor Seryl_tRNA_N PF02403.22 gi|305662994|ref|YP_003859282.1| - 1.2 9.4 12.5 1.4 9.2 5.5 2.6 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Atg14 PF10186.9 gi|305662994|ref|YP_003859282.1| - 1.4 8.0 11.3 4.2 6.4 11.3 1.7 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Prefoldin_2 PF01920.20 gi|305662994|ref|YP_003859282.1| - 1.5 8.8 18.9 5.9 6.9 1.4 3.7 1 1 3 4 4 4 0 Prefoldin subunit Nup88 PF10168.9 gi|305662994|ref|YP_003859282.1| - 1.5 6.5 9.4 2.1 6.0 9.4 1.2 1 0 0 1 1 1 0 Nuclear pore component BRE1 PF08647.11 gi|305662994|ref|YP_003859282.1| - 1.5 8.9 10.4 0.38 10.8 3.5 2.8 1 1 2 3 3 3 0 BRE1 E3 ubiquitin ligase DivIC PF04977.15 gi|305662994|ref|YP_003859282.1| - 1.8 8.4 13.3 1 9.2 4.0 2.6 1 1 1 2 2 2 0 Septum formation initiator Osmo_CC PF08946.10 gi|305662994|ref|YP_003859282.1| - 1.9 8.8 18.0 7.2 6.9 3.1 3.7 2 2 1 3 3 3 0 Osmosensory transporter coiled coil BRCC36_C PF18110.1 gi|305662994|ref|YP_003859282.1| - 1.9 8.7 8.6 33 4.7 0.0 4.2 3 1 1 4 4 4 0 BRCC36 C-terminal helical domain YabA PF06156.13 gi|305662994|ref|YP_003859282.1| - 1.9 9.2 11.4 4.7 7.9 4.1 2.4 1 1 1 2 2 2 0 Initiation control protein YabA DUF4446 PF14584.6 gi|305662994|ref|YP_003859282.1| - 2.1 8.3 12.8 4.7 7.2 1.8 3.5 2 1 2 4 4 4 0 Protein of unknown function (DUF4446) Nsp1_C PF05064.13 gi|305662994|ref|YP_003859282.1| - 2.2 8.1 11.7 1.8 8.4 1.0 2.5 1 1 0 2 2 2 0 Nsp1-like C-terminal region UPF0242 PF06785.11 gi|305662994|ref|YP_003859282.1| - 2.4 8.2 17.0 5.6 7.0 17.0 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Spc24 PF08286.11 gi|305662994|ref|YP_003859282.1| - 2.7 8.3 10.8 8.2 6.7 4.6 2.9 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Fmp27_WPPW PF10359.9 gi|305662994|ref|YP_003859282.1| - 3 6.6 11.7 48 2.6 11.9 2.0 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain BCAS2 PF05700.11 gi|305662994|ref|YP_003859282.1| - 3 7.5 9.4 3.5 7.3 1.3 2.3 2 0 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) HJURP_C PF12347.8 gi|305662994|ref|YP_003859282.1| - 3.1 7.9 5.7 14 5.9 0.4 3.1 1 1 2 3 3 3 0 Holliday junction regulator protein family C-terminal repeat DUF4164 PF13747.6 gi|305662994|ref|YP_003859282.1| - 3.1 8.1 16.7 4.4 7.6 4.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) CEP209_CC5 PF16574.5 gi|305662994|ref|YP_003859282.1| - 3.2 7.9 17.8 62 3.8 17.8 2.5 1 1 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 DUF4710 PF15828.5 gi|305662994|ref|YP_003859282.1| - 3.6 7.8 6.2 5.1 7.3 2.6 3.0 1 1 1 3 3 1 0 Domain of unknown function (DUF4710) CorA PF01544.18 gi|305662994|ref|YP_003859282.1| - 3.7 6.8 9.5 5.5 6.2 8.1 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein HalX PF08663.10 gi|305662994|ref|YP_003859282.1| - 4 7.8 20.6 24 5.3 1.2 4.4 1 1 2 3 3 3 0 HalX domain Cauli_AT PF03233.13 gi|305662994|ref|YP_003859282.1| - 4.2 7.3 7.1 34 4.3 0.6 2.4 1 1 1 2 2 2 0 Aphid transmission protein DUF4298 PF14131.6 gi|305662994|ref|YP_003859282.1| - 4.2 7.4 5.9 1.6e+02 2.4 3.9 3.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4298) UPF0449 PF15136.6 gi|305662994|ref|YP_003859282.1| - 4.5 7.8 10.3 5.3 7.6 2.1 2.4 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 Cep57_CLD PF14073.6 gi|305662994|ref|YP_003859282.1| - 4.7 7.2 18.5 5.5 7.0 11.5 2.2 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 DUF5401 PF17380.2 gi|305662994|ref|YP_003859282.1| - 4.9 5.1 20.7 6.3 4.7 20.7 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5401) DUF2951 PF11166.8 gi|305662994|ref|YP_003859282.1| - 5.6 7.2 9.5 4.4 7.6 0.7 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2951) PTRF_SDPR PF15237.6 gi|305662994|ref|YP_003859282.1| - 5.8 6.5 12.6 4.6 6.8 5.2 2.4 1 1 1 2 2 2 0 PTRF/SDPR family FlaC_arch PF05377.11 gi|305662994|ref|YP_003859282.1| - 6.2 7.3 16.7 1.5 9.3 2.5 3.8 3 1 2 5 5 3 0 Flagella accessory protein C (FlaC) Med30 PF11315.8 gi|305662994|ref|YP_003859282.1| - 7.7 6.7 9.0 6.7 6.9 5.1 2.2 1 1 1 2 2 2 0 Mediator complex subunit 30 CCDC53 PF10152.9 gi|305662994|ref|YP_003859282.1| - 8 6.9 6.1 2.8 8.4 2.5 1.8 1 1 1 2 2 1 0 Subunit CCDC53 of WASH complex TMF_DNA_bd PF12329.8 gi|305662994|ref|YP_003859282.1| - 9.2 6.3 16.2 2.6 8.1 5.9 2.6 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding EamA PF00892.20 gi|305662995|ref|YP_003859283.1| - 4.3e-32 111.1 40.1 2.4e-21 76.3 17.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family ATPase PF06745.13 gi|305662996|ref|YP_003859284.1| - 2.3e-38 131.8 0.1 5.1e-38 130.7 0.0 1.5 2 0 0 2 2 2 1 KaiC GvpD PF07088.11 gi|305662996|ref|YP_003859284.1| - 9.2e-06 24.5 0.2 8.6e-05 21.3 0.2 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|305662996|ref|YP_003859284.1| - 0.00093 18.5 0.0 0.0025 17.1 0.0 1.7 1 1 0 1 1 1 1 Rad51 Elong_Iki1 PF10483.9 gi|305662996|ref|YP_003859284.1| - 0.0021 17.6 0.1 0.29 10.6 0.0 2.1 2 0 0 2 2 2 1 Elongator subunit Iki1 DnaB_C PF03796.15 gi|305662996|ref|YP_003859284.1| - 0.0057 16.0 0.0 0.015 14.7 0.0 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|305662996|ref|YP_003859284.1| - 0.0092 16.4 0.0 0.02 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|305662996|ref|YP_003859284.1| - 0.0093 16.5 0.1 0.019 15.5 0.1 1.4 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.6 gi|305662996|ref|YP_003859284.1| - 0.0098 16.1 0.0 0.022 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|305662996|ref|YP_003859284.1| - 0.036 13.6 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|305662996|ref|YP_003859284.1| - 0.047 13.8 0.0 0.14 12.3 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.18 gi|305662996|ref|YP_003859284.1| - 0.061 12.7 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|305662996|ref|YP_003859284.1| - 0.068 13.4 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain EAL PF00563.20 gi|305662996|ref|YP_003859284.1| - 0.091 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 EAL domain AAA_10 PF12846.7 gi|305662996|ref|YP_003859284.1| - 0.1 11.5 0.0 0.19 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.6 gi|305662996|ref|YP_003859284.1| - 0.1 12.3 0.0 0.29 10.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|305662996|ref|YP_003859284.1| - 0.11 12.4 0.7 3.1 7.7 0.0 2.6 3 0 0 3 3 3 0 RsgA GTPase GTP_EFTU PF00009.27 gi|305662996|ref|YP_003859284.1| - 0.15 11.6 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain RNA_helicase PF00910.22 gi|305662996|ref|YP_003859284.1| - 0.16 12.4 0.1 0.84 10.1 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.6 gi|305662996|ref|YP_003859284.1| - 0.18 11.5 0.1 0.37 10.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain Cellulase PF00150.18 gi|305662997|ref|YP_003859285.1| - 1.2e-41 143.1 0.0 1.5e-41 142.7 0.0 1.1 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Fumerase PF05681.14 gi|305662998|ref|YP_003859286.1| - 8.3e-76 255.0 0.0 1.1e-75 254.6 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.12 gi|305662999|ref|YP_003859287.1| - 3e-43 147.6 0.0 3.5e-43 147.3 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Pyr_redox PF00070.27 gi|305662999|ref|YP_003859287.1| - 0.091 13.3 0.1 0.23 12.0 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Acylphosphatase PF00708.18 gi|305663000|ref|YP_003859288.1| - 1.4e-22 79.8 0.1 1.6e-22 79.7 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase SSF PF00474.17 gi|305663001|ref|YP_003859289.1| - 3.1e-28 98.8 30.1 5e-28 98.1 30.1 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family MARVEL PF01284.23 gi|305663002|ref|YP_003859290.1| - 0.0089 16.1 3.1 0.01 15.9 3.1 1.0 1 0 0 1 1 1 1 Membrane-associating domain CCB1 PF12046.8 gi|305663002|ref|YP_003859290.1| - 0.052 12.9 3.9 0.059 12.7 3.9 1.1 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B GATase PF00117.28 gi|305663003|ref|YP_003859291.1| - 9.3e-36 123.4 0.0 1.3e-35 122.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.22 gi|305663003|ref|YP_003859291.1| - 1.6e-33 114.6 0.4 3.4e-33 113.6 0.1 1.8 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|305663003|ref|YP_003859291.1| - 1.2e-10 40.9 0.1 4.3e-07 29.3 0.0 2.3 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.13 gi|305663003|ref|YP_003859291.1| - 2.3e-07 30.8 0.2 2.3e-06 27.6 0.2 2.1 1 1 0 1 1 1 1 Peptidase C26 ATP_bind_3 PF01171.20 gi|305663003|ref|YP_003859291.1| - 0.00036 20.3 0.0 0.0005 19.9 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|305663003|ref|YP_003859291.1| - 0.00083 18.9 0.0 0.005 16.3 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|305663003|ref|YP_003859291.1| - 0.0052 15.6 0.0 0.027 13.3 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase ThiI PF02568.14 gi|305663003|ref|YP_003859291.1| - 0.012 15.2 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CitMHS PF03600.16 gi|305663004|ref|YP_003859292.1| - 2.6e-42 145.1 32.8 2.6e-42 145.1 32.8 1.4 2 0 0 2 2 2 1 Citrate transporter DctM PF06808.12 gi|305663004|ref|YP_003859292.1| - 0.0052 15.7 29.8 0.013 14.4 10.1 2.3 1 1 1 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component PTPS PF01242.19 gi|305663005|ref|YP_003859293.1| - 4.6e-26 91.2 0.0 5.1e-26 91.1 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Fer4_14 PF13394.6 gi|305663006|ref|YP_003859294.1| - 1.4e-14 54.2 0.0 2.3e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|305663006|ref|YP_003859294.1| - 9.9e-12 45.3 0.0 1.5e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|305663006|ref|YP_003859294.1| - 1.4e-07 32.0 0.0 2.4e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily QueC PF06508.13 gi|305663007|ref|YP_003859295.1| - 5.5e-39 133.9 0.0 8.8e-39 133.2 0.0 1.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|305663007|ref|YP_003859295.1| - 0.016 14.8 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) LCAT PF02450.15 gi|305663007|ref|YP_003859295.1| - 0.022 14.0 0.1 0.028 13.6 0.1 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase Tautomerase PF01361.21 gi|305663010|ref|YP_003859298.1| - 8.5e-13 48.0 0.1 9.8e-13 47.8 0.1 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|305663010|ref|YP_003859298.1| - 1e-09 38.3 0.0 1.2e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.6 gi|305663010|ref|YP_003859298.1| - 8.8e-06 26.0 0.0 9.6e-06 25.9 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme DUF2247 PF10004.9 gi|305663010|ref|YP_003859298.1| - 0.044 13.6 0.0 0.046 13.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2247) DUF1289 PF06945.13 gi|305663010|ref|YP_003859298.1| - 0.22 11.4 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1289) Ubie_methyltran PF01209.18 gi|305663012|ref|YP_003859300.1| - 1.1e-06 28.1 0.0 2.6e-05 23.7 0.0 2.4 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|305663012|ref|YP_003859300.1| - 3.2e-06 27.8 0.0 5.2e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|305663012|ref|YP_003859300.1| - 6.3e-06 25.8 0.0 8.1e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|305663012|ref|YP_003859300.1| - 1.4e-05 24.7 0.0 2.1e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|305663012|ref|YP_003859300.1| - 3.8e-05 24.3 0.0 8.7e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.17 gi|305663012|ref|YP_003859300.1| - 4.4e-05 23.0 0.0 6.1e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_30 PF05430.11 gi|305663012|ref|YP_003859300.1| - 8.1e-05 22.5 0.0 0.00031 20.6 0.0 1.8 2 0 0 2 2 2 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.11 gi|305663012|ref|YP_003859300.1| - 0.00021 20.3 0.0 0.00031 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Cons_hypoth95 PF03602.15 gi|305663012|ref|YP_003859300.1| - 0.0013 18.4 0.0 0.002 17.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|305663012|ref|YP_003859300.1| - 0.019 14.8 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|305663012|ref|YP_003859300.1| - 0.026 14.3 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|305663012|ref|YP_003859300.1| - 0.044 13.7 0.0 0.077 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|305663012|ref|YP_003859300.1| - 0.046 13.5 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_24 PF13578.6 gi|305663012|ref|YP_003859300.1| - 0.088 13.8 0.0 0.17 12.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.16 gi|305663012|ref|YP_003859300.1| - 0.094 12.0 0.0 0.13 11.5 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase PmbA_TldD PF01523.16 gi|305663013|ref|YP_003859301.1| - 1.5e-49 169.3 0.3 2e-49 169.0 0.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|305663014|ref|YP_003859302.1| - 2.3e-55 188.4 2.6 3.2e-55 188.0 2.6 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF424 PF04242.13 gi|305663015|ref|YP_003859303.1| - 0.03 14.6 0.0 0.039 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF424) F420_oxidored PF03807.17 gi|305663016|ref|YP_003859304.1| - 1.3e-17 64.2 1.4 2e-17 63.6 0.5 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.6 gi|305663016|ref|YP_003859304.1| - 1.4e-16 60.6 0.0 2.2e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation NAD_binding_2 PF03446.15 gi|305663016|ref|YP_003859304.1| - 2.7e-09 37.4 0.3 5.5e-09 36.4 0.3 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.17 gi|305663016|ref|YP_003859304.1| - 0.00048 19.2 0.5 0.0031 16.6 0.1 2.0 2 0 0 2 2 2 1 Prephenate dehydrogenase Rossmann-like PF10727.9 gi|305663016|ref|YP_003859304.1| - 0.0012 18.7 0.2 0.0026 17.6 0.2 1.6 1 0 0 1 1 1 1 Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|305663016|ref|YP_003859304.1| - 0.0035 16.7 0.1 0.0057 16.0 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|305663016|ref|YP_003859304.1| - 0.028 14.3 0.8 0.057 13.3 0.2 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|305663016|ref|YP_003859304.1| - 0.038 14.2 0.5 0.11 12.7 0.2 2.1 2 0 0 2 2 2 0 TrkA-N domain MFS_1 PF07690.16 gi|305663018|ref|YP_003859306.1| - 6.4e-22 78.0 47.5 3.5e-13 49.2 13.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|305663018|ref|YP_003859306.1| - 4.6e-05 22.2 36.5 0.00044 18.9 12.7 3.1 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|305663018|ref|YP_003859306.1| - 0.06 12.2 23.5 0.38 9.5 23.2 2.1 1 1 0 1 1 1 0 MFS_1 like family DUF4227 PF14004.6 gi|305663018|ref|YP_003859306.1| - 0.25 11.3 3.2 0.28 11.2 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF4227) DUF1459 PF07312.11 gi|305663018|ref|YP_003859306.1| - 4.1 7.7 0.0 4.1 7.7 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1459) YdjM PF04307.14 gi|305663019|ref|YP_003859307.1| - 5.4e-14 51.9 7.4 9e-14 51.2 7.4 1.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF1286 PF06939.11 gi|305663019|ref|YP_003859307.1| - 0.0011 19.2 6.2 0.0011 19.2 6.2 1.8 2 1 0 2 2 2 1 Protein of unknown function (DUF1286) DUF1129 PF06570.11 gi|305663019|ref|YP_003859307.1| - 0.13 11.7 2.9 0.23 10.9 2.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) efThoc1 PF11957.8 gi|305663019|ref|YP_003859307.1| - 0.27 9.8 0.0 0.34 9.5 0.0 1.0 1 0 0 1 1 1 0 THO complex subunit 1 transcription elongation factor MoaC PF01967.21 gi|305663020|ref|YP_003859308.1| - 5e-44 149.7 0.7 5.6e-44 149.5 0.7 1.0 1 0 0 1 1 1 1 MoaC family DUF5591 PF17884.1 gi|305663021|ref|YP_003859309.1| - 9.2e-18 64.6 0.0 1.1e-17 64.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) SHR3_chaperone PF08229.11 gi|305663023|ref|YP_003859311.1| - 0.34 9.9 6.9 0.044 12.8 2.0 1.8 1 1 0 2 2 2 0 ER membrane protein SH3 HTH_45 PF14947.6 gi|305663024|ref|YP_003859312.1| - 5.3e-16 58.4 0.5 6e-16 58.2 0.5 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix RNA_pol_Rpc34 PF05158.12 gi|305663024|ref|YP_003859312.1| - 0.00047 19.6 0.8 0.0011 18.4 0.3 1.7 1 1 1 2 2 2 1 RNA polymerase Rpc34 subunit Rrf2 PF02082.20 gi|305663024|ref|YP_003859312.1| - 0.0012 19.2 0.0 0.0017 18.7 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|305663024|ref|YP_003859312.1| - 0.0021 17.9 0.0 0.0029 17.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|305663024|ref|YP_003859312.1| - 0.0062 16.3 0.0 0.0065 16.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|305663024|ref|YP_003859312.1| - 0.015 15.8 0.1 0.022 15.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Ribosomal_S25 PF03297.15 gi|305663024|ref|YP_003859312.1| - 0.015 15.5 0.0 0.021 15.0 0.0 1.4 1 0 0 1 1 1 0 S25 ribosomal protein FtsK_gamma PF09397.10 gi|305663024|ref|YP_003859312.1| - 0.039 13.8 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 Ftsk gamma domain HTH_Crp_2 PF13545.6 gi|305663024|ref|YP_003859312.1| - 0.043 13.8 0.1 0.082 12.9 0.1 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_47 PF16221.5 gi|305663024|ref|YP_003859312.1| - 0.053 13.1 0.0 0.12 11.9 0.0 1.8 2 1 0 2 2 2 0 winged helix-turn-helix AAA_assoc_C PF09821.9 gi|305663024|ref|YP_003859312.1| - 0.059 13.9 0.0 0.092 13.3 0.0 1.3 1 0 0 1 1 1 0 C-terminal AAA-associated domain MarR_2 PF12802.7 gi|305663024|ref|YP_003859312.1| - 0.06 13.2 0.0 0.093 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.9 gi|305663024|ref|YP_003859312.1| - 0.066 13.3 0.2 0.12 12.5 0.1 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.6 gi|305663024|ref|YP_003859312.1| - 0.097 12.2 0.4 0.097 12.2 0.4 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding BOP1NT PF08145.12 gi|305663024|ref|YP_003859312.1| - 0.11 12.5 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 BOP1NT (NUC169) domain DprA_WH PF17782.1 gi|305663024|ref|YP_003859312.1| - 0.12 12.6 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain Peripla_BP_2 PF01497.18 gi|305663026|ref|YP_003859314.1| - 1.4e-22 80.4 0.0 1.8e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|305663027|ref|YP_003859315.1| - 6.6e-43 147.0 0.0 1.1e-42 146.3 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein PAP2_3 PF14378.6 gi|305663027|ref|YP_003859315.1| - 0.00021 21.0 2.6 0.00021 21.0 2.6 1.9 2 0 0 2 2 2 1 PAP2 superfamily MctB PF11382.8 gi|305663027|ref|YP_003859315.1| - 0.027 14.2 0.2 0.051 13.3 0.2 1.4 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB FecCD PF01032.18 gi|305663028|ref|YP_003859316.1| - 3.3e-68 230.0 39.2 4.2e-68 229.6 39.2 1.0 1 0 0 1 1 1 1 FecCD transport family DUF373 PF04123.13 gi|305663028|ref|YP_003859316.1| - 2.8 7.3 24.2 0.11 11.9 17.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF373) ABC_tran PF00005.27 gi|305663029|ref|YP_003859317.1| - 4e-29 101.9 0.0 5.7e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663029|ref|YP_003859317.1| - 1.1e-07 32.0 1.1 0.0002 21.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Zeta_toxin PF06414.12 gi|305663029|ref|YP_003859317.1| - 2.7e-05 23.5 0.1 9e-05 21.8 0.0 1.8 2 1 0 2 2 2 1 Zeta toxin SMC_N PF02463.19 gi|305663029|ref|YP_003859317.1| - 0.00013 21.5 0.1 0.18 11.2 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_14 PF13173.6 gi|305663029|ref|YP_003859317.1| - 0.00014 21.9 0.1 0.0011 19.0 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|305663029|ref|YP_003859317.1| - 0.00014 21.5 0.0 0.00025 20.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|305663029|ref|YP_003859317.1| - 0.00017 22.0 0.0 0.00028 21.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|305663029|ref|YP_003859317.1| - 0.00036 20.9 0.2 0.0062 17.0 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|305663029|ref|YP_003859317.1| - 0.00038 20.7 0.1 0.0029 17.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|305663029|ref|YP_003859317.1| - 0.0004 20.4 0.0 0.00053 20.0 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|305663029|ref|YP_003859317.1| - 0.00062 20.3 0.1 0.00095 19.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|305663029|ref|YP_003859317.1| - 0.0019 18.0 0.0 0.0036 17.1 0.0 1.4 2 0 0 2 2 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|305663029|ref|YP_003859317.1| - 0.0072 16.1 0.0 0.021 14.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|305663029|ref|YP_003859317.1| - 0.0084 16.3 0.0 0.03 14.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|305663029|ref|YP_003859317.1| - 0.024 14.5 0.6 0.14 12.1 0.0 2.3 3 0 0 3 3 3 0 NTPase Mg_chelatase PF01078.21 gi|305663029|ref|YP_003859317.1| - 0.027 13.9 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|305663029|ref|YP_003859317.1| - 0.032 14.2 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain TsaE PF02367.17 gi|305663029|ref|YP_003859317.1| - 0.036 14.1 0.1 0.071 13.1 0.1 1.5 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|305663029|ref|YP_003859317.1| - 0.063 13.3 0.0 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|305663029|ref|YP_003859317.1| - 0.063 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|305663029|ref|YP_003859317.1| - 0.071 13.5 0.3 0.18 12.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|305663029|ref|YP_003859317.1| - 0.091 13.0 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|305663029|ref|YP_003859317.1| - 0.1 12.3 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|305663029|ref|YP_003859317.1| - 0.12 11.0 0.1 0.31 9.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|305663029|ref|YP_003859317.1| - 0.12 11.2 0.0 0.46 9.3 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain RNA_helicase PF00910.22 gi|305663029|ref|YP_003859317.1| - 0.12 12.7 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PIF1 PF05970.14 gi|305663029|ref|YP_003859317.1| - 0.13 11.4 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AFG1_ATPase PF03969.16 gi|305663029|ref|YP_003859317.1| - 0.14 11.1 0.1 2.6 6.8 0.0 2.1 1 1 1 2 2 2 0 AFG1-like ATPase AAA_27 PF13514.6 gi|305663029|ref|YP_003859317.1| - 0.21 11.2 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|305663029|ref|YP_003859317.1| - 0.23 8.9 0.2 0.31 8.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Radical_SAM PF04055.21 gi|305663030|ref|YP_003859318.1| - 2.5e-15 57.3 0.1 4.4e-15 56.5 0.0 1.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|305663030|ref|YP_003859318.1| - 0.00045 20.3 0.1 0.0013 18.8 0.1 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|305663030|ref|YP_003859318.1| - 0.0043 17.3 0.0 0.015 15.6 0.0 1.9 1 1 1 2 2 2 1 4Fe-4S single cluster domain ABC_membrane_3 PF13748.6 gi|305663034|ref|YP_003859322.1| - 0.15 11.3 0.0 0.52 9.5 0.0 1.7 2 0 0 2 2 2 0 ABC transporter transmembrane region TrmB PF01978.19 gi|305663035|ref|YP_003859323.1| - 7.6e-05 22.5 0.2 0.0002 21.2 0.2 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|305663035|ref|YP_003859323.1| - 0.00027 21.2 0.1 0.00045 20.5 0.1 1.4 1 0 0 1 1 1 1 Penicillinase repressor PaaX PF07848.12 gi|305663035|ref|YP_003859323.1| - 0.001 19.2 0.2 0.0028 17.9 0.2 1.7 1 0 0 1 1 1 1 PaaX-like protein GntR PF00392.21 gi|305663035|ref|YP_003859323.1| - 0.07 12.8 0.2 0.15 11.7 0.2 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|305663035|ref|YP_003859323.1| - 0.12 12.9 0.7 0.35 11.4 0.7 1.9 1 1 1 2 2 2 0 Winged helix DNA-binding domain DUF5340 PF17275.2 gi|305663036|ref|YP_003859324.1| - 0.054 13.6 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5340) RAMPs PF03787.15 gi|305663038|ref|YP_003859326.1| - 3.9e-09 36.9 0.1 7.4e-09 35.9 0.1 1.4 1 0 0 1 1 1 1 RAMP superfamily DUF2704 PF10866.8 gi|305663039|ref|YP_003859327.1| - 0.0037 17.2 2.3 0.0084 16.0 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2704) RAMPs PF03787.15 gi|305663041|ref|YP_003859329.1| - 1e-18 68.2 0.9 4.6e-18 66.0 0.9 2.1 1 1 0 1 1 1 1 RAMP superfamily DUF257 PF03192.13 gi|305663042|ref|YP_003859330.1| - 0.06 13.1 0.2 0.065 13.0 0.2 1.0 1 0 0 1 1 1 0 Pyrococcus protein of unknown function, DUF257 Lactonase PF10282.9 gi|305663042|ref|YP_003859330.1| - 0.11 11.7 0.0 0.12 11.6 0.0 1.0 1 0 0 1 1 1 0 Lactonase, 7-bladed beta-propeller RAMPs PF03787.15 gi|305663043|ref|YP_003859331.1| - 5.8e-22 78.8 0.0 2.6e-19 70.1 0.0 2.5 1 1 1 2 2 2 2 RAMP superfamily MutS_II PF05188.17 gi|305663043|ref|YP_003859331.1| - 0.18 12.1 0.1 0.36 11.1 0.1 1.5 1 0 0 1 1 1 0 MutS domain II DUF1140 PF06600.11 gi|305663043|ref|YP_003859331.1| - 0.79 10.2 2.9 0.41 11.1 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1140) GMP_synt_C PF00958.22 gi|305663044|ref|YP_003859332.1| - 0.091 12.8 0.0 0.26 11.4 0.0 1.8 1 0 0 1 1 1 0 GMP synthase C terminal domain CRISPR_Cas6 PF10040.9 gi|305663048|ref|YP_003859336.1| - 2.2e-11 44.3 0.0 3.5e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Cas6_N PF17952.1 gi|305663048|ref|YP_003859336.1| - 1.5e-05 25.2 0.0 2.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Cas6 N-terminal domain Csa1 PF06023.12 gi|305663049|ref|YP_003859337.1| - 1.2e-53 182.4 0.1 4e-53 180.7 0.1 1.6 1 1 0 1 1 1 1 CRISPR-associated exonuclease Csa1 Baculo_PEP_C PF04513.12 gi|305663051|ref|YP_003859339.1| - 2.2e-07 31.0 0.0 5.8e-05 23.1 0.0 1.8 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.18 gi|305663051|ref|YP_003859339.1| - 4.5e-07 29.9 2.6 7.7e-07 29.2 2.6 1.4 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Fib_alpha PF08702.10 gi|305663051|ref|YP_003859339.1| - 1.4e-05 25.3 0.4 2.7e-05 24.4 0.1 1.5 2 0 0 2 2 1 1 Fibrinogen alpha/beta chain family FlaC_arch PF05377.11 gi|305663051|ref|YP_003859339.1| - 1.7e-05 25.1 1.4 0.0068 16.8 0.1 3.4 2 1 0 3 3 3 1 Flagella accessory protein C (FlaC) DUF1664 PF07889.12 gi|305663051|ref|YP_003859339.1| - 7.9e-05 22.7 0.3 0.015 15.3 0.1 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) RmuC PF02646.16 gi|305663051|ref|YP_003859339.1| - 0.00019 20.7 0.2 0.011 14.9 0.1 2.3 1 1 2 3 3 3 2 RmuC family Phasin PF05597.11 gi|305663051|ref|YP_003859339.1| - 0.00021 21.3 1.8 0.00021 21.3 1.8 2.1 2 0 0 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) HSBP1 PF06825.12 gi|305663051|ref|YP_003859339.1| - 0.00027 20.7 4.7 0.021 14.7 0.8 3.1 1 1 1 2 2 2 2 Heat shock factor binding protein 1 IFT57 PF10498.9 gi|305663051|ref|YP_003859339.1| - 0.00031 19.8 0.1 0.0018 17.4 0.0 2.0 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 DUF4795 PF16043.5 gi|305663051|ref|YP_003859339.1| - 0.00032 20.4 3.2 0.00035 20.2 0.6 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4795) Nup54 PF13874.6 gi|305663051|ref|YP_003859339.1| - 0.00049 20.2 0.2 0.0012 18.9 0.2 1.7 1 0 0 1 1 1 1 Nucleoporin complex subunit 54 Sec3_C PF09763.9 gi|305663051|ref|YP_003859339.1| - 0.00091 17.8 0.1 0.0014 17.1 0.1 1.3 1 0 0 1 1 1 1 Exocyst complex component Sec3 COG2 PF06148.11 gi|305663051|ref|YP_003859339.1| - 0.0014 18.8 1.3 0.46 10.6 0.5 2.4 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 Tropomyosin PF00261.20 gi|305663051|ref|YP_003859339.1| - 0.0034 16.8 12.1 0.016 14.6 0.9 3.0 1 1 1 2 2 2 2 Tropomyosin Exonuc_VII_L PF02601.15 gi|305663051|ref|YP_003859339.1| - 0.0035 17.0 0.6 0.0042 16.7 0.6 1.3 1 1 0 1 1 1 1 Exonuclease VII, large subunit PKcGMP_CC PF16808.5 gi|305663051|ref|YP_003859339.1| - 0.0037 17.1 0.2 0.0037 17.1 0.2 5.1 3 1 2 5 5 3 1 Coiled-coil N-terminus of cGMP-dependent protein kinase Hemagglutinin PF00509.18 gi|305663051|ref|YP_003859339.1| - 0.0051 15.3 0.5 0.032 12.7 0.0 2.1 1 1 1 2 2 2 1 Haemagglutinin DUF948 PF06103.11 gi|305663051|ref|YP_003859339.1| - 0.0076 16.5 0.0 0.17 12.1 0.0 2.5 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) DUF16 PF01519.16 gi|305663051|ref|YP_003859339.1| - 0.0098 16.4 3.0 0.013 16.0 1.2 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF16 KxDL PF10241.9 gi|305663051|ref|YP_003859339.1| - 0.012 15.9 0.6 0.74 10.1 0.0 2.6 1 1 1 2 2 2 0 Uncharacterized conserved protein Fzo_mitofusin PF04799.13 gi|305663051|ref|YP_003859339.1| - 0.012 15.2 0.1 0.033 13.7 0.0 1.7 1 1 0 1 1 1 0 fzo-like conserved region SOAR PF16533.5 gi|305663051|ref|YP_003859339.1| - 0.015 15.2 1.5 0.86 9.6 0.3 3.0 1 1 1 2 2 2 0 STIM1 Orai1-activating region CdvA PF18822.1 gi|305663051|ref|YP_003859339.1| - 0.016 15.0 8.0 1.6 8.6 0.4 3.8 2 1 2 4 4 4 0 CdvA-like coiled-coil domain Nsp1_C PF05064.13 gi|305663051|ref|YP_003859339.1| - 0.02 14.7 0.2 8.3 6.2 0.1 2.4 1 1 1 2 2 2 0 Nsp1-like C-terminal region NPV_P10 PF05531.12 gi|305663051|ref|YP_003859339.1| - 0.021 15.3 0.0 0.49 10.9 0.0 2.5 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Snapin_Pallidin PF14712.6 gi|305663051|ref|YP_003859339.1| - 0.026 14.9 0.8 0.3 11.5 0.6 2.5 1 1 2 3 3 3 0 Snapin/Pallidin V_ATPase_I PF01496.19 gi|305663051|ref|YP_003859339.1| - 0.031 12.2 3.2 0.021 12.8 1.9 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2802 PF10975.8 gi|305663051|ref|YP_003859339.1| - 0.035 14.2 1.5 15 5.8 0.3 3.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) Occludin_ELL PF07303.13 gi|305663051|ref|YP_003859339.1| - 0.042 14.6 2.4 0.11 13.2 0.4 2.6 2 1 1 3 3 3 0 Occludin homology domain WXG100 PF06013.12 gi|305663051|ref|YP_003859339.1| - 0.062 13.5 0.0 9.7 6.5 0.0 2.6 2 0 0 2 2 2 0 Proteins of 100 residues with WXG CLZ PF16526.5 gi|305663051|ref|YP_003859339.1| - 0.067 13.5 11.2 1.1 9.6 2.5 3.4 2 1 1 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Prefoldin_2 PF01920.20 gi|305663051|ref|YP_003859339.1| - 0.083 12.9 0.1 0.083 12.9 0.1 2.9 3 0 0 3 3 2 0 Prefoldin subunit DUF4164 PF13747.6 gi|305663051|ref|YP_003859339.1| - 0.27 11.5 14.3 0.067 13.5 8.9 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) FapA PF03961.13 gi|305663051|ref|YP_003859339.1| - 0.56 8.8 5.6 0.058 12.0 0.7 1.7 2 0 0 2 2 2 0 Flagellar Assembly Protein A Med4 PF10018.9 gi|305663051|ref|YP_003859339.1| - 0.57 9.8 4.8 7.3 6.2 0.4 2.8 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4375 PF14300.6 gi|305663051|ref|YP_003859339.1| - 0.58 10.4 4.2 0.6 10.4 0.4 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4375) CorA PF01544.18 gi|305663051|ref|YP_003859339.1| - 1.2 8.4 5.3 0.31 10.3 2.3 1.6 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF4351 PF14261.6 gi|305663051|ref|YP_003859339.1| - 1.3 9.1 6.4 3.6 7.7 0.8 4.3 2 1 2 4 4 4 0 Domain of unknown function (DUF4351) Fibin PF15819.5 gi|305663051|ref|YP_003859339.1| - 1.5 8.6 6.7 1.1 9.0 0.6 2.6 1 1 0 2 2 2 0 Fin bud initiation factor homologue TSKS PF15358.6 gi|305663051|ref|YP_003859339.1| - 1.9 6.8 6.1 0.41 8.9 2.7 1.5 2 0 0 2 2 2 0 Testis-specific serine kinase substrate XhlA PF10779.9 gi|305663051|ref|YP_003859339.1| - 2.5 8.4 10.8 24 5.2 5.6 3.4 2 1 0 2 2 2 0 Haemolysin XhlA MtrG PF04210.13 gi|305663051|ref|YP_003859339.1| - 3.1 7.7 12.3 17 5.3 3.4 4.3 2 1 2 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G ATPase PF06745.13 gi|305663052|ref|YP_003859340.1| - 1e-27 97.0 0.0 1.7e-27 96.3 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|305663052|ref|YP_003859340.1| - 1.1e-05 25.1 0.0 2.3e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305663052|ref|YP_003859340.1| - 0.0007 20.0 0.0 0.0015 18.9 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|305663052|ref|YP_003859340.1| - 0.001 19.3 0.0 0.0032 17.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|305663052|ref|YP_003859340.1| - 0.0053 16.5 0.0 0.017 14.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|305663052|ref|YP_003859340.1| - 0.0075 16.3 0.0 0.019 15.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|305663052|ref|YP_003859340.1| - 0.012 14.3 0.0 0.043 12.4 0.0 1.8 1 1 0 1 1 1 0 GvpD gas vesicle protein AAA PF00004.29 gi|305663052|ref|YP_003859340.1| - 0.016 15.6 0.0 0.033 14.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|305663052|ref|YP_003859340.1| - 0.027 14.2 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|305663052|ref|YP_003859340.1| - 0.032 14.1 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Thymidylate_kin PF02223.17 gi|305663052|ref|YP_003859340.1| - 0.038 13.7 0.0 0.32 10.7 0.0 2.4 2 1 0 3 3 3 0 Thymidylate kinase DUF2075 PF09848.9 gi|305663052|ref|YP_003859340.1| - 0.049 12.9 0.0 0.069 12.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.14 gi|305663052|ref|YP_003859340.1| - 0.068 13.2 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|305663052|ref|YP_003859340.1| - 0.07 13.6 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain MEDS PF14417.6 gi|305663052|ref|YP_003859340.1| - 0.09 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_30 PF13604.6 gi|305663052|ref|YP_003859340.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|305663052|ref|YP_003859340.1| - 0.11 12.6 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Elong_Iki1 PF10483.9 gi|305663052|ref|YP_003859340.1| - 0.12 11.9 0.0 0.32 10.4 0.0 1.7 2 0 0 2 2 2 0 Elongator subunit Iki1 cobW PF02492.19 gi|305663052|ref|YP_003859340.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|305663052|ref|YP_003859340.1| - 0.17 12.5 0.1 0.34 11.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|305663053|ref|YP_003859341.1| - 3.2e-06 27.6 1.8 8.4e-05 23.0 0.4 3.2 2 1 1 3 3 3 1 Radical SAM superfamily DUF1848 PF08902.11 gi|305663053|ref|YP_003859341.1| - 4 7.1 7.8 2.7 7.6 5.9 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) PTS_2-RNA PF01885.16 gi|305663054|ref|YP_003859342.1| - 9.7e-30 104.0 0.0 1.2e-29 103.6 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 gi|305663054|ref|YP_003859342.1| - 0.12 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase catalytic domain MazE_antitoxin PF04014.18 gi|305663055|ref|YP_003859343.1| - 7.5e-09 35.3 0.4 7.5e-09 35.3 0.4 1.4 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin OrfB_Zn_ribbon PF07282.11 gi|305663057|ref|YP_003859345.1| - 2.5e-18 65.8 1.2 4e-18 65.1 0.1 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|305663057|ref|YP_003859345.1| - 0.00022 21.4 0.4 0.00053 20.2 0.4 1.6 1 0 0 1 1 1 1 Probable transposase PHF5 PF03660.14 gi|305663057|ref|YP_003859345.1| - 0.095 12.9 0.2 0.17 12.1 0.2 1.3 1 0 0 1 1 1 0 PHF5-like protein DUF2614 PF11023.8 gi|305663057|ref|YP_003859345.1| - 0.16 12.1 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain MFS_1 PF07690.16 gi|305663059|ref|YP_003859347.1| - 1.7e-48 165.4 87.4 4.2e-39 134.5 58.4 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|305663059|ref|YP_003859347.1| - 5e-10 38.8 36.9 1.7e-08 33.8 15.0 2.8 2 1 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.20 gi|305663059|ref|YP_003859347.1| - 0.0018 16.7 4.9 0.0018 16.7 4.9 4.1 1 1 1 4 4 4 1 Organic Anion Transporter Polypeptide (OATP) family VWA PF00092.28 gi|305663060|ref|YP_003859348.1| - 1.7e-14 54.4 0.0 3.3e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|305663060|ref|YP_003859348.1| - 2e-07 31.6 0.0 4e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|305663060|ref|YP_003859348.1| - 7.4e-07 29.2 0.0 1.9e-06 27.9 0.0 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain FHA PF00498.26 gi|305663061|ref|YP_003859349.1| - 5.8e-24 84.2 0.0 8e-24 83.8 0.0 1.2 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|305663061|ref|YP_003859349.1| - 1e-19 70.6 0.0 1.3e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain Pkinase PF00069.25 gi|305663062|ref|YP_003859350.1| - 3.1e-18 66.1 0.1 4.5e-17 62.3 0.1 2.4 2 1 0 2 2 2 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|305663062|ref|YP_003859350.1| - 3.1e-10 39.8 0.0 1.5e-09 37.5 0.0 1.9 1 1 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|305663062|ref|YP_003859350.1| - 0.034 13.5 0.0 0.061 12.7 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Glyco_hydro_12 PF01670.16 gi|305663063|ref|YP_003859351.1| - 4.1e-22 79.2 0.3 7.2e-22 78.4 0.3 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 ABC_tran PF00005.27 gi|305663064|ref|YP_003859352.1| - 2.4e-34 118.8 0.0 3.1e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663064|ref|YP_003859352.1| - 4.7e-13 49.6 0.4 5.5e-07 29.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663064|ref|YP_003859352.1| - 1.2e-10 41.2 0.2 1.8e-06 27.6 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|305663064|ref|YP_003859352.1| - 1.1e-05 25.3 0.3 0.046 13.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|305663064|ref|YP_003859352.1| - 0.00093 19.5 0.8 0.009 16.3 0.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|305663064|ref|YP_003859352.1| - 0.0012 19.4 0.1 0.0022 18.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|305663064|ref|YP_003859352.1| - 0.0017 18.0 0.0 0.0032 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|305663064|ref|YP_003859352.1| - 0.0017 18.8 0.6 0.06 13.8 0.6 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|305663064|ref|YP_003859352.1| - 0.002 17.8 0.1 0.0071 16.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|305663064|ref|YP_003859352.1| - 0.0026 17.7 0.1 0.0052 16.7 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|305663064|ref|YP_003859352.1| - 0.0047 17.3 0.6 0.01 16.2 0.6 1.7 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|305663064|ref|YP_003859352.1| - 0.007 16.6 0.0 0.17 12.2 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit cobW PF02492.19 gi|305663064|ref|YP_003859352.1| - 0.01 15.5 0.1 0.021 14.4 0.1 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|305663064|ref|YP_003859352.1| - 0.046 12.8 0.0 0.078 12.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Rad17 PF03215.15 gi|305663064|ref|YP_003859352.1| - 0.066 13.1 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 gi|305663064|ref|YP_003859352.1| - 0.093 12.6 0.3 0.24 11.3 0.1 1.8 1 1 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|305663064|ref|YP_003859352.1| - 0.095 12.9 0.2 0.37 10.9 0.1 1.9 2 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|305663064|ref|YP_003859352.1| - 0.1 12.5 0.0 0.17 11.7 0.0 1.5 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|305663064|ref|YP_003859352.1| - 0.11 12.2 0.1 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|305663064|ref|YP_003859352.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_pol_Rpb5_C PF01191.19 gi|305663064|ref|YP_003859352.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb5, C-terminal domain AAA_18 PF13238.6 gi|305663064|ref|YP_003859352.1| - 0.22 12.1 0.9 1.1 9.8 0.5 2.1 2 1 0 2 2 2 0 AAA domain MacB_PCD PF12704.7 gi|305663065|ref|YP_003859353.1| - 1e-18 68.4 5.2 1e-18 68.4 5.2 2.3 3 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|305663065|ref|YP_003859353.1| - 4.6e-15 55.9 5.1 4.6e-15 55.9 5.1 3.5 3 1 0 3 3 3 1 FtsX-like permease family FMN_red PF03358.15 gi|305663068|ref|YP_003859356.1| - 4.4e-07 29.8 0.0 6.2e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 gi|305663068|ref|YP_003859356.1| - 6.3e-06 26.5 0.0 0.0012 19.1 0.0 2.6 2 1 1 3 3 3 1 Flavodoxin domain Flavodoxin_2 PF02525.17 gi|305663068|ref|YP_003859356.1| - 0.0015 18.2 0.0 0.0023 17.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.25 gi|305663068|ref|YP_003859356.1| - 0.0025 18.0 0.0 0.016 15.4 0.0 1.9 2 0 0 2 2 2 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|305663068|ref|YP_003859356.1| - 0.015 15.0 0.0 0.058 13.1 0.0 1.9 2 0 0 2 2 2 0 Flavodoxin domain Flavodoxin_4 PF12682.7 gi|305663068|ref|YP_003859356.1| - 0.028 14.1 0.4 0.048 13.4 0.4 1.6 1 1 0 1 1 1 0 Flavodoxin FR47 PF08445.10 gi|305663069|ref|YP_003859357.1| - 2.5e-16 59.4 0.0 3.9e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.25 gi|305663069|ref|YP_003859357.1| - 1.9e-13 50.7 0.3 3.6e-13 49.8 0.3 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|305663069|ref|YP_003859357.1| - 4.9e-10 39.7 0.1 1.3e-09 38.4 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|305663069|ref|YP_003859357.1| - 1.3e-07 31.6 0.0 2.2e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|305663069|ref|YP_003859357.1| - 5.3e-06 26.2 0.0 6.5e-06 25.9 0.0 1.3 1 1 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|305663069|ref|YP_003859357.1| - 0.0037 17.4 0.1 0.01 15.9 0.0 1.8 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|305663069|ref|YP_003859357.1| - 0.022 14.2 1.0 0.36 10.3 0.0 2.2 2 0 0 2 2 2 0 Putative acetyl-transferase Acetyltransf_3 PF13302.7 gi|305663069|ref|YP_003859357.1| - 0.026 15.2 0.0 0.04 14.6 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|305663069|ref|YP_003859357.1| - 0.034 14.2 0.1 0.072 13.2 0.1 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Methyltransf_25 PF13649.6 gi|305663070|ref|YP_003859358.1| - 9.4e-08 32.7 0.0 1.7e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|305663070|ref|YP_003859358.1| - 1.3e-05 25.0 0.0 1.7e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|305663070|ref|YP_003859358.1| - 0.014 15.1 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase RPA PF10134.9 gi|305663070|ref|YP_003859358.1| - 0.13 11.7 0.2 0.2 11.1 0.2 1.2 1 0 0 1 1 1 0 Replication initiator protein A Ubie_methyltran PF01209.18 gi|305663070|ref|YP_003859358.1| - 0.13 11.5 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CcdA PF07362.12 gi|305663071|ref|YP_003859359.1| - 8.3e-07 29.3 0.5 1.1e-06 29.0 0.5 1.3 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_3 PF12651.7 gi|305663071|ref|YP_003859359.1| - 0.032 14.2 0.6 0.032 14.2 0.6 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|305663071|ref|YP_003859359.1| - 0.033 14.1 2.2 0.033 14.1 2.2 2.3 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.11 gi|305663071|ref|YP_003859359.1| - 0.057 14.2 1.6 0.073 13.8 1.6 1.3 1 1 0 1 1 1 0 Rv0623-like transcription factor Thy1 PF02511.15 gi|305663072|ref|YP_003859360.1| - 9.6e-54 182.1 0.0 8.3e-53 179.0 0.0 2.0 1 1 1 2 2 2 1 Thymidylate synthase complementing protein Meth_synt_2 PF01717.18 gi|305663073|ref|YP_003859361.1| - 3.2e-62 210.7 0.0 4e-62 210.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|305663073|ref|YP_003859361.1| - 7e-11 42.2 0.2 1.2e-09 38.1 0.2 2.2 2 1 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Band_7 PF01145.25 gi|305663073|ref|YP_003859361.1| - 0.16 12.0 0.0 5.3 7.0 0.1 2.8 2 1 0 2 2 2 0 SPFH domain / Band 7 family Meth_synt_1 PF08267.12 gi|305663074|ref|YP_003859362.1| - 1.7e-15 57.4 0.0 7.5e-14 52.0 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|305663074|ref|YP_003859362.1| - 4.4e-08 32.8 0.0 9.4e-08 31.7 0.0 1.4 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain DUF2204 PF09970.9 gi|305663075|ref|YP_003859363.1| - 0.032 13.9 0.3 0.057 13.0 0.1 1.7 2 1 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) Sec3_C PF09763.9 gi|305663077|ref|YP_003859365.1| - 0.003 16.0 0.5 0.0047 15.4 0.5 1.2 1 0 0 1 1 1 1 Exocyst complex component Sec3 Snapin_Pallidin PF14712.6 gi|305663077|ref|YP_003859365.1| - 0.0036 17.7 1.7 0.0036 17.7 1.7 2.4 1 1 2 3 3 3 1 Snapin/Pallidin DUF16 PF01519.16 gi|305663077|ref|YP_003859365.1| - 0.009 16.5 2.0 0.009 16.5 2.0 2.6 1 1 1 2 2 2 1 Protein of unknown function DUF16 MCPsignal PF00015.21 gi|305663077|ref|YP_003859365.1| - 0.041 13.7 1.2 0.088 12.6 0.4 1.8 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Hema_stalk PF08720.10 gi|305663077|ref|YP_003859365.1| - 0.051 13.3 1.4 0.098 12.4 1.4 1.6 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk AAA_27 PF13514.6 gi|305663077|ref|YP_003859365.1| - 0.064 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain OmpH PF03938.14 gi|305663077|ref|YP_003859365.1| - 0.083 13.2 0.4 0.15 12.4 0.4 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) FlaC_arch PF05377.11 gi|305663077|ref|YP_003859365.1| - 0.091 13.2 12.3 0.31 11.5 1.0 3.7 2 1 2 4 4 4 0 Flagella accessory protein C (FlaC) NBD94 PF16830.5 gi|305663077|ref|YP_003859365.1| - 0.14 12.6 4.8 0.16 12.4 1.4 2.5 2 1 0 2 2 2 0 Nucleotide-Binding Domain 94 of RH LCIB_C_CA PF18599.1 gi|305663077|ref|YP_003859365.1| - 0.22 10.8 0.8 0.37 10.0 0.6 1.5 1 1 0 1 1 1 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases HAP1_N PF04849.13 gi|305663077|ref|YP_003859365.1| - 0.26 10.4 10.4 0.36 10.0 10.4 1.2 1 0 0 1 1 1 0 HAP1 N-terminal conserved region GAS PF13851.6 gi|305663077|ref|YP_003859365.1| - 0.37 10.1 9.0 0.44 9.9 7.1 1.9 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding Vac_Fusion PF02346.16 gi|305663077|ref|YP_003859365.1| - 0.54 9.9 17.2 1.8 8.2 1.4 4.0 2 1 2 4 4 4 0 Chordopoxvirus multifunctional envelope protein A27 MADF_DNA_bdg PF10545.9 gi|305663077|ref|YP_003859365.1| - 0.7 10.2 4.2 0.28 11.5 1.4 1.8 2 0 0 2 2 1 0 Alcohol dehydrogenase transcription factor Myb/SANT-like SlyX PF04102.12 gi|305663077|ref|YP_003859365.1| - 0.99 10.1 8.7 2.1 9.0 1.4 3.1 2 1 1 3 3 2 0 SlyX DUF1515 PF07439.11 gi|305663077|ref|YP_003859365.1| - 1.1 9.4 4.6 1.4 9.0 3.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) GrpE PF01025.19 gi|305663077|ref|YP_003859365.1| - 1.2 8.8 5.8 0.92 9.1 3.3 1.9 1 1 1 2 2 2 0 GrpE SKA2 PF16740.5 gi|305663077|ref|YP_003859365.1| - 1.5 8.7 5.7 3.5 7.4 2.9 2.6 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 COG2 PF06148.11 gi|305663077|ref|YP_003859365.1| - 2.6 8.1 6.7 0.76 9.9 2.3 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 GvpL_GvpF PF06386.11 gi|305663077|ref|YP_003859365.1| - 3.4 7.5 7.3 5.2 6.9 7.3 1.3 1 1 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF YabA PF06156.13 gi|305663077|ref|YP_003859365.1| - 4 8.1 8.5 1.4e+02 3.2 8.4 2.6 1 1 0 1 1 1 0 Initiation control protein YabA XhlA PF10779.9 gi|305663077|ref|YP_003859365.1| - 9 6.6 12.9 5.7 7.2 2.0 3.4 2 1 1 3 3 3 0 Haemolysin XhlA ATPase_2 PF01637.18 gi|305663078|ref|YP_003859366.1| - 5.4e-55 186.8 0.1 5.4e-55 186.8 0.1 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|305663078|ref|YP_003859366.1| - 2.1e-05 24.8 0.0 4.2e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305663078|ref|YP_003859366.1| - 0.0002 21.8 0.0 0.00031 21.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|305663078|ref|YP_003859366.1| - 0.00068 20.1 0.0 0.0023 18.4 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|305663078|ref|YP_003859366.1| - 0.00073 18.8 0.1 0.0024 17.1 0.0 1.8 2 0 0 2 2 2 1 NB-ARC domain AAA_30 PF13604.6 gi|305663078|ref|YP_003859366.1| - 0.0018 18.0 0.0 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.18 gi|305663078|ref|YP_003859366.1| - 0.0071 16.2 0.6 0.21 11.4 0.0 2.4 2 1 0 2 2 2 1 Bacterial dnaA protein NACHT PF05729.12 gi|305663078|ref|YP_003859366.1| - 0.0097 15.8 0.0 0.68 9.8 0.0 2.3 2 0 0 2 2 2 1 NACHT domain RNA_helicase PF00910.22 gi|305663078|ref|YP_003859366.1| - 0.011 16.1 0.0 0.033 14.6 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_5 PF07728.14 gi|305663078|ref|YP_003859366.1| - 0.033 14.2 0.0 0.062 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|305663078|ref|YP_003859366.1| - 0.04 13.8 0.0 0.73 9.7 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|305663078|ref|YP_003859366.1| - 0.04 14.1 0.0 0.083 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|305663078|ref|YP_003859366.1| - 0.06 13.4 0.0 0.15 12.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|305663078|ref|YP_003859366.1| - 0.086 12.6 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|305663078|ref|YP_003859366.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region RuvB_N PF05496.12 gi|305663078|ref|YP_003859366.1| - 0.14 11.9 0.0 0.34 10.6 0.0 1.6 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain ArgoMid PF16487.5 gi|305663078|ref|YP_003859366.1| - 0.14 12.4 0.2 0.34 11.2 0.0 1.8 2 0 0 2 2 1 0 Mid domain of argonaute AAA_23 PF13476.6 gi|305663078|ref|YP_003859366.1| - 0.17 12.4 0.0 0.37 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain PBP_like_2 PF12849.7 gi|305663079|ref|YP_003859367.1| - 8e-44 150.4 0.0 2.4e-43 148.9 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|305663079|ref|YP_003859367.1| - 2.1e-07 30.2 0.0 5e-07 29.0 0.0 1.6 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|305663079|ref|YP_003859367.1| - 1.1e-06 28.9 0.2 2.1e-06 27.9 0.2 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Hema_stalk PF08720.10 gi|305663079|ref|YP_003859367.1| - 0.083 12.6 0.3 0.14 11.8 0.3 1.4 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk DUF4307 PF14155.6 gi|305663079|ref|YP_003859367.1| - 0.1 12.4 0.4 0.19 11.6 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) GHMP_kinases_C PF08544.13 gi|305663080|ref|YP_003859368.1| - 5.3e-06 26.7 0.0 1.2e-05 25.6 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal DUF1464 PF07318.12 gi|305663081|ref|YP_003859369.1| - 1.9e-89 300.1 0.6 2.1e-89 299.9 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) Imm35 PF15567.6 gi|305663081|ref|YP_003859369.1| - 0.18 12.0 0.0 0.9 9.7 0.0 2.0 2 0 0 2 2 2 0 Immunity protein 35 Comm PF15957.5 gi|305663083|ref|YP_003859371.1| - 0.03 14.7 0.1 0.03 14.7 0.1 1.2 1 0 0 1 1 1 0 Commissureless ABC_tran PF00005.27 gi|305663084|ref|YP_003859372.1| - 9.2e-33 113.7 0.0 1.5e-32 113.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305663084|ref|YP_003859372.1| - 2e-17 63.5 0.4 4.8e-17 62.2 0.3 1.7 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|305663084|ref|YP_003859372.1| - 2.1e-09 37.7 1.4 8.6e-07 29.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|305663084|ref|YP_003859372.1| - 7.1e-05 23.1 0.6 0.00068 19.9 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305663084|ref|YP_003859372.1| - 0.0011 19.4 0.0 0.0018 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|305663084|ref|YP_003859372.1| - 0.0037 16.7 0.3 0.11 11.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|305663084|ref|YP_003859372.1| - 0.0047 15.6 0.1 0.045 12.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|305663084|ref|YP_003859372.1| - 0.048 13.8 0.1 0.075 13.1 0.1 1.5 1 1 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 gi|305663084|ref|YP_003859372.1| - 0.065 13.0 0.2 0.13 12.0 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.14 gi|305663084|ref|YP_003859372.1| - 0.22 11.4 0.1 0.4 10.6 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|305663085|ref|YP_003859373.1| - 3.2e-27 95.7 0.0 4.4e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305663085|ref|YP_003859373.1| - 3.7e-20 72.2 0.1 6.2e-20 71.5 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|305663085|ref|YP_003859373.1| - 2.8e-07 30.2 0.1 4.6e-06 26.2 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|305663085|ref|YP_003859373.1| - 3.1e-07 30.5 1.3 0.0037 17.1 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|305663085|ref|YP_003859373.1| - 9.6e-06 25.2 0.0 1.9e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|305663085|ref|YP_003859373.1| - 0.0011 19.0 0.0 0.0036 17.4 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|305663085|ref|YP_003859373.1| - 0.003 17.8 0.3 0.017 15.4 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305663085|ref|YP_003859373.1| - 0.0033 17.8 0.0 0.0054 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|305663085|ref|YP_003859373.1| - 0.006 15.4 1.0 0.31 9.8 0.4 2.4 2 1 0 2 2 2 1 Predicted ATPase of the ABC class DUF87 PF01935.17 gi|305663085|ref|YP_003859373.1| - 0.0063 16.6 0.1 0.015 15.4 0.0 1.5 2 0 0 2 2 2 1 Helicase HerA, central domain RsgA_GTPase PF03193.16 gi|305663085|ref|YP_003859373.1| - 0.014 15.3 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|305663085|ref|YP_003859373.1| - 0.016 14.2 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein TniB PF05621.11 gi|305663085|ref|YP_003859373.1| - 0.024 14.1 0.1 2.4 7.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_23 PF13476.6 gi|305663085|ref|YP_003859373.1| - 0.041 14.4 0.0 0.066 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|305663085|ref|YP_003859373.1| - 0.049 13.4 0.0 0.38 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.22 gi|305663085|ref|YP_003859373.1| - 0.056 12.6 0.0 0.099 11.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|305663085|ref|YP_003859373.1| - 0.077 13.0 0.0 0.78 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|305663085|ref|YP_003859373.1| - 0.083 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|305663085|ref|YP_003859373.1| - 0.12 11.9 0.2 1.1 8.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|305663085|ref|YP_003859373.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family NIR_SIR PF01077.22 gi|305663085|ref|YP_003859373.1| - 0.19 11.2 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Nitrite and sulphite reductase 4Fe-4S domain AAA_11 PF13086.6 gi|305663085|ref|YP_003859373.1| - 0.22 11.3 0.0 0.92 9.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|305663086|ref|YP_003859374.1| - 2.2e-26 92.7 13.0 2.2e-26 92.7 13.0 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|305663086|ref|YP_003859374.1| - 0.0001 22.2 2.0 0.0001 22.2 2.0 4.3 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|305663087|ref|YP_003859375.1| - 2.3e-43 148.1 13.2 2.3e-43 148.1 13.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component LapA_dom PF06305.11 gi|305663087|ref|YP_003859375.1| - 6.5 6.7 6.7 19 5.1 0.1 3.1 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain SBP_bac_5 PF00496.22 gi|305663088|ref|YP_003859376.1| - 1.3e-96 323.8 1.9 1.9e-96 323.3 1.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.12 gi|305663088|ref|YP_003859376.1| - 0.003 17.2 0.0 1.8 8.1 0.0 2.6 2 0 0 2 2 2 2 Substrate binding domain of ABC-type glycine betaine transport system DUF981 PF06168.11 gi|305663089|ref|YP_003859377.1| - 0.0011 19.0 4.2 0.0011 19.0 4.2 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF981) DUF1129 PF06570.11 gi|305663089|ref|YP_003859377.1| - 0.31 10.5 2.6 0.37 10.2 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Claudin_2 PF13903.6 gi|305663089|ref|YP_003859377.1| - 0.89 9.3 4.3 1.1 9.0 4.3 1.3 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF202 PF02656.15 gi|305663089|ref|YP_003859377.1| - 5.1 7.6 13.9 1.6e+03 -0.4 13.9 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF998 PF06197.13 gi|305663089|ref|YP_003859377.1| - 6.1 6.4 11.4 0.56 9.8 3.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF998) DUF872 PF05915.12 gi|305663089|ref|YP_003859377.1| - 7.3 6.8 12.9 8.1 6.7 0.7 2.5 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) bPH_2 PF03703.14 gi|305663090|ref|YP_003859378.1| - 4e-14 52.5 0.0 6.9e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF2207 PF09972.9 gi|305663090|ref|YP_003859378.1| - 0.039 12.7 5.1 0.049 12.4 5.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tudor_FRX1 PF18336.1 gi|305663090|ref|YP_003859378.1| - 0.05 13.5 0.6 0.09 12.7 0.6 1.3 1 0 0 1 1 1 0 Fragile X mental retardation Tudor domain Babuvirus_MP PF07234.11 gi|305663090|ref|YP_003859378.1| - 0.21 11.8 6.7 0.059 13.5 3.4 1.8 1 1 1 2 2 2 0 Movement and RNA silencing protein RseC_MucC PF04246.12 gi|305663090|ref|YP_003859378.1| - 0.91 9.5 4.2 1.4 8.9 4.2 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF4191 PF13829.6 gi|305663090|ref|YP_003859378.1| - 6.3 6.1 7.3 7.5 5.8 6.6 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) ATPase PF06745.13 gi|305663091|ref|YP_003859379.1| - 3e-28 98.8 0.1 1.4e-26 93.3 0.0 2.3 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.6 gi|305663091|ref|YP_003859379.1| - 8.8e-08 32.0 0.0 1.6e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|305663091|ref|YP_003859379.1| - 1.2e-06 27.5 0.0 3.1e-06 26.1 0.0 1.7 2 0 0 2 2 2 1 GvpD gas vesicle protein AAA PF00004.29 gi|305663091|ref|YP_003859379.1| - 0.00015 22.2 0.0 0.00048 20.6 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|305663091|ref|YP_003859379.1| - 0.00052 20.4 0.0 0.00094 19.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|305663091|ref|YP_003859379.1| - 0.00068 19.7 0.0 0.0024 17.9 0.0 2.1 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|305663091|ref|YP_003859379.1| - 0.001 19.0 0.2 0.11 12.4 0.0 2.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Elong_Iki1 PF10483.9 gi|305663091|ref|YP_003859379.1| - 0.003 17.1 0.1 0.018 14.5 0.0 2.0 2 0 0 2 2 2 1 Elongator subunit Iki1 AAA_22 PF13401.6 gi|305663091|ref|YP_003859379.1| - 0.0046 17.2 0.0 0.0095 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|305663091|ref|YP_003859379.1| - 0.015 15.1 0.0 0.035 13.8 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|305663091|ref|YP_003859379.1| - 0.017 15.0 0.0 0.032 14.1 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|305663091|ref|YP_003859379.1| - 0.026 14.3 0.0 0.058 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|305663091|ref|YP_003859379.1| - 0.037 13.2 0.0 0.052 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) cobW PF02492.19 gi|305663091|ref|YP_003859379.1| - 0.07 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|305663091|ref|YP_003859379.1| - 0.075 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|305663091|ref|YP_003859379.1| - 0.097 13.2 0.1 0.21 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain SPA PF08616.10 gi|305663091|ref|YP_003859379.1| - 0.13 12.2 0.1 2.1 8.3 0.0 2.3 2 0 0 2 2 2 0 Stabilization of polarity axis NB-ARC PF00931.22 gi|305663091|ref|YP_003859379.1| - 0.13 11.4 0.0 0.31 10.2 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain DnaB_C PF03796.15 gi|305663091|ref|YP_003859379.1| - 0.13 11.5 0.0 0.63 9.3 0.0 1.9 2 1 0 2 2 2 0 DnaB-like helicase C terminal domain Viral_helicase1 PF01443.18 gi|305663091|ref|YP_003859379.1| - 0.17 11.6 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase CbiA PF01656.23 gi|305663091|ref|YP_003859379.1| - 0.17 11.9 0.0 0.39 10.8 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 gi|305663091|ref|YP_003859379.1| - 0.22 11.8 0.0 0.44 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|305663091|ref|YP_003859379.1| - 0.24 11.1 0.0 0.33 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF553 PF04473.12 gi|305663092|ref|YP_003859380.1| - 1.1e-28 99.7 4.1 2.8e-27 95.2 4.1 2.7 1 1 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.19 gi|305663092|ref|YP_003859380.1| - 5.2e-05 23.7 0.0 0.00013 22.3 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily TBCC PF07986.12 gi|305663092|ref|YP_003859380.1| - 0.033 13.9 3.1 0.084 12.6 3.1 1.6 1 0 0 1 1 1 0 Tubulin binding cofactor C PsaL PF02605.15 gi|305663092|ref|YP_003859380.1| - 0.32 10.7 1.7 0.38 10.4 0.1 1.9 2 0 0 2 2 2 0 Photosystem I reaction centre subunit XI TrmB PF01978.19 gi|305663095|ref|YP_003859383.1| - 0.0033 17.3 2.9 0.56 10.1 0.2 3.8 3 1 1 4 4 4 1 Sugar-specific transcriptional regulator TrmB vATP-synt_E PF01991.18 gi|305663095|ref|YP_003859383.1| - 0.064 12.6 3.4 0.83 9.0 0.1 3.0 3 0 0 3 3 3 0 ATP synthase (E/31 kDa) subunit DUF4477 PF14780.6 gi|305663095|ref|YP_003859383.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4477) HTH_24 PF13412.6 gi|305663095|ref|YP_003859383.1| - 0.076 12.6 1.4 1.8 8.2 0.0 3.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.9 gi|305663095|ref|YP_003859383.1| - 0.077 13.1 0.4 20 5.4 0.1 2.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|305663095|ref|YP_003859383.1| - 0.079 12.9 0.3 1.6 8.7 0.0 3.3 5 0 0 5 5 5 0 MarR family RIFIN PF02009.16 gi|305663096|ref|YP_003859384.1| - 0.31 10.9 13.2 0.4 10.5 13.2 1.1 1 0 0 1 1 1 0 Rifin T3RM_EcoP15I_C PF18273.1 gi|305663096|ref|YP_003859384.1| - 0.56 10.6 4.4 0.21 11.9 0.6 2.2 2 0 0 2 2 2 0 Type III R-M EcoP15I C-terminal domain DUF5122 PF17164.4 gi|305663096|ref|YP_003859384.1| - 0.73 10.2 9.9 12 6.3 0.4 4.3 4 0 0 4 4 4 0 Domain of unknown function (DUF5122) beta-propeller PQQ_3 PF13570.6 gi|305663096|ref|YP_003859384.1| - 1.2 9.8 12.2 5.8 7.5 0.0 5.3 4 2 0 4 4 4 0 PQQ-like domain DUF5615 PF18480.1 gi|305663097|ref|YP_003859385.1| - 1.7e-21 75.7 0.1 3e-21 74.9 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF5615) Mut7-C PF01927.16 gi|305663097|ref|YP_003859385.1| - 6.4e-05 23.1 0.0 6.4e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain PIN_10 PF18478.1 gi|305663097|ref|YP_003859385.1| - 7.9e-05 22.8 0.0 0.00012 22.3 0.0 1.3 1 0 0 1 1 1 1 PIN like domain TIR_2 PF13676.6 gi|305663097|ref|YP_003859385.1| - 0.022 15.3 0.0 0.029 15.0 0.0 1.5 1 1 0 1 1 1 0 TIR domain Glyco_hydro_72 PF03198.14 gi|305663097|ref|YP_003859385.1| - 0.041 13.1 0.0 0.041 13.1 0.0 1.1 1 0 0 1 1 1 0 Glucanosyltransferase TIR PF01582.20 gi|305663097|ref|YP_003859385.1| - 0.067 13.0 0.1 0.088 12.6 0.1 1.1 1 0 0 1 1 1 0 TIR domain DUF433 PF04255.14 gi|305663098|ref|YP_003859386.1| - 1.9e-27 94.9 0.1 2.3e-27 94.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) zf-CCHC_4 PF14392.6 gi|305663100|ref|YP_003859388.1| - 0.041 13.6 0.5 0.37 10.6 0.2 2.4 3 0 0 3 3 3 0 Zinc knuckle PaREP1 PF05942.11 gi|305663102|ref|YP_003859390.1| - 1.3e-28 99.2 1.5 1.5e-28 99.0 1.5 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Ribosomal_L5 PF00281.19 gi|305663102|ref|YP_003859390.1| - 0.049 14.0 0.3 7.6 7.0 0.0 2.6 2 1 0 3 3 3 0 Ribosomal protein L5 DUF357 PF04010.13 gi|305663102|ref|YP_003859390.1| - 0.069 13.2 0.1 0.3 11.2 0.0 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF357) DUF872 PF05915.12 gi|305663104|ref|YP_003859392.1| - 0.26 11.5 1.2 1.8 8.8 0.4 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF3040 PF11239.8 gi|305663104|ref|YP_003859392.1| - 7.3 6.9 6.2 14 6.0 3.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF996 PF06195.13 gi|305663105|ref|YP_003859393.1| - 8.8e-35 119.9 27.8 8.8e-35 119.9 27.8 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF5353 PF17304.2 gi|305663105|ref|YP_003859393.1| - 0.22 11.3 3.1 0.64 9.8 3.1 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF5353) DUF1077 PF06417.12 gi|305663105|ref|YP_003859393.1| - 0.39 10.7 7.3 0.15 12.1 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1077) DUF2371 PF10177.9 gi|305663105|ref|YP_003859393.1| - 1.3 9.2 6.4 3.9 7.7 0.1 2.6 2 1 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) SseC PF04888.12 gi|305663105|ref|YP_003859393.1| - 2.3 7.7 7.1 3.8 7.0 7.1 1.3 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family FlgN PF05130.12 gi|305663106|ref|YP_003859394.1| - 0.026 15.1 2.3 0.031 14.8 0.2 1.9 2 0 0 2 2 2 0 FlgN protein PSK_trans_fac PF07704.11 gi|305663106|ref|YP_003859394.1| - 0.045 14.5 5.3 0.045 14.5 5.3 2.4 2 1 0 2 2 2 0 Rv0623-like transcription factor DUF5327 PF17261.2 gi|305663106|ref|YP_003859394.1| - 0.069 13.9 0.2 0.14 13.0 0.2 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5327) Complex1_LYR_2 PF13233.6 gi|305663106|ref|YP_003859394.1| - 0.72 10.6 6.2 0.67 10.7 3.5 2.1 2 0 0 2 2 2 0 Complex1_LYR-like Glucodextran_C PF09985.9 gi|305663108|ref|YP_003859396.1| - 9.6e-74 247.7 0.9 1e-73 247.6 0.1 1.3 2 0 0 2 2 2 1 C-terminal binding-module, SLH-like, of glucodextranase Mononeg_mRNAcap PF14318.6 gi|305663108|ref|YP_003859396.1| - 0.0027 17.0 0.2 0.0038 16.5 0.2 1.2 1 0 0 1 1 1 1 Mononegavirales mRNA-capping region V DUF4064 PF13273.6 gi|305663108|ref|YP_003859396.1| - 0.16 12.2 5.8 0.72 10.2 2.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Orf78 PF06024.12 gi|305663108|ref|YP_003859396.1| - 3.5 8.0 7.4 6.5 7.1 1.1 2.3 2 0 0 2 2 2 0 Orf78 (ac78) Glyco_hydro_57 PF03065.15 gi|305663109|ref|YP_003859397.1| - 2.3e-80 270.3 1.2 3.4e-80 269.7 1.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glucodextran_C PF09985.9 gi|305663109|ref|YP_003859397.1| - 4e-74 248.9 0.4 3.8e-73 245.7 0.1 2.2 2 0 0 2 2 2 1 C-terminal binding-module, SLH-like, of glucodextranase Glyco_hydro_53 PF07745.13 gi|305663110|ref|YP_003859398.1| - 4.8e-119 397.3 0.1 6.5e-119 396.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 53 Glucodextran_C PF09985.9 gi|305663110|ref|YP_003859398.1| - 2.5e-48 164.5 0.2 5.2e-48 163.5 0.2 1.4 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase Big_4 PF07532.11 gi|305663110|ref|YP_003859398.1| - 4.9e-09 35.8 1.7 4.9e-09 35.8 1.7 2.9 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 4) Cellulase PF00150.18 gi|305663110|ref|YP_003859398.1| - 2.8e-08 33.6 1.0 4.8e-08 32.8 1.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_cc PF11790.8 gi|305663110|ref|YP_003859398.1| - 0.0013 18.4 0.1 0.0028 17.3 0.1 1.6 1 0 0 1 1 1 1 Glycosyl hydrolase catalytic core BPD_transp_1 PF00528.22 gi|305663111|ref|YP_003859399.1| - 1.4e-12 47.7 18.6 1.4e-12 47.7 18.6 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|305663112|ref|YP_003859400.1| - 1.6e-13 50.8 23.0 1.6e-13 50.8 23.0 2.5 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|305663113|ref|YP_003859401.1| - 2.8e-28 99.5 0.2 4.3e-28 98.9 0.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|305663113|ref|YP_003859401.1| - 1e-21 78.2 1.2 1.7e-21 77.5 1.2 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF908 PF06012.12 gi|305663113|ref|YP_003859401.1| - 1.1 8.6 7.7 1.7 8.0 7.7 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF908) Med13_C PF06333.12 gi|305663113|ref|YP_003859401.1| - 3.6 6.8 9.6 5.2 6.2 9.6 1.1 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain Shisa PF13908.6 gi|305663113|ref|YP_003859401.1| - 3.8 7.7 9.1 6 7.1 9.1 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator FAP PF07174.11 gi|305663113|ref|YP_003859401.1| - 6.1 6.2 17.6 9.3 5.6 17.6 1.2 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) ABC_tran PF00005.27 gi|305663114|ref|YP_003859402.1| - 1.1e-33 116.7 0.0 1.6e-33 116.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663114|ref|YP_003859402.1| - 1.1e-09 38.6 0.1 0.00032 20.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|305663114|ref|YP_003859402.1| - 2.9e-06 27.3 0.0 6e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 TOBE domain OB_MalK PF17912.1 gi|305663114|ref|YP_003859402.1| - 7.6e-06 26.7 0.0 2.3e-05 25.1 0.0 1.9 1 0 0 1 1 1 1 MalK OB fold domain SMC_N PF02463.19 gi|305663114|ref|YP_003859402.1| - 1.3e-05 24.7 0.3 0.00019 20.9 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|305663114|ref|YP_003859402.1| - 0.00022 21.4 0.0 0.00062 20.0 0.0 1.9 1 0 0 1 1 1 1 TOBE domain AAA_23 PF13476.6 gi|305663114|ref|YP_003859402.1| - 0.00058 20.4 0.0 0.0013 19.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain Pyr_redox PF00070.27 gi|305663114|ref|YP_003859402.1| - 0.0026 18.3 0.3 0.32 11.6 0.0 3.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AAA_29 PF13555.6 gi|305663114|ref|YP_003859402.1| - 0.0027 17.4 0.0 0.0065 16.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|305663114|ref|YP_003859402.1| - 0.011 16.1 0.1 0.024 15.0 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|305663114|ref|YP_003859402.1| - 0.016 15.7 0.0 0.044 14.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|305663114|ref|YP_003859402.1| - 0.017 14.9 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase AAA_5 PF07728.14 gi|305663114|ref|YP_003859402.1| - 0.035 14.1 0.4 0.076 13.0 0.4 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|305663114|ref|YP_003859402.1| - 0.05 13.9 0.0 0.23 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|305663114|ref|YP_003859402.1| - 0.059 13.8 0.0 0.27 11.7 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|305663114|ref|YP_003859402.1| - 0.063 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|305663114|ref|YP_003859402.1| - 0.063 13.2 0.1 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_30 PF13604.6 gi|305663114|ref|YP_003859402.1| - 0.13 12.0 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain CBFD_NFYB_HMF PF00808.23 gi|305663115|ref|YP_003859403.1| - 0.17 12.2 5.3 0.1 12.9 1.6 2.4 2 1 0 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone GAS PF13851.6 gi|305663116|ref|YP_003859404.1| - 0.00037 19.9 6.1 0.00037 19.9 6.1 1.8 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding Snapin_Pallidin PF14712.6 gi|305663116|ref|YP_003859404.1| - 0.0011 19.4 3.4 0.0011 19.4 3.4 2.1 2 0 0 2 2 2 1 Snapin/Pallidin XhlA PF10779.9 gi|305663116|ref|YP_003859404.1| - 0.0012 19.0 16.0 0.03 14.5 1.7 3.0 3 0 0 3 3 3 2 Haemolysin XhlA Sec3_C PF09763.9 gi|305663116|ref|YP_003859404.1| - 0.0087 14.5 1.4 0.013 13.9 1.4 1.2 1 0 0 1 1 1 1 Exocyst complex component Sec3 FlaC_arch PF05377.11 gi|305663116|ref|YP_003859404.1| - 0.023 15.1 9.7 0.1 13.0 0.9 3.1 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|305663116|ref|YP_003859404.1| - 0.048 12.5 4.6 0.09 11.6 4.6 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Exonuc_VII_L PF02601.15 gi|305663116|ref|YP_003859404.1| - 0.049 13.2 0.2 0.057 13.0 0.2 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit AAA_27 PF13514.6 gi|305663116|ref|YP_003859404.1| - 0.062 12.9 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain TPR_MLP1_2 PF07926.12 gi|305663116|ref|YP_003859404.1| - 0.071 13.2 5.4 3.1 7.9 0.2 2.5 2 1 1 3 3 2 0 TPR/MLP1/MLP2-like protein CLZ PF16526.5 gi|305663116|ref|YP_003859404.1| - 0.094 13.1 12.2 0.12 12.8 0.8 3.1 2 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels HAP1_N PF04849.13 gi|305663116|ref|YP_003859404.1| - 0.12 11.6 11.0 0.048 12.9 8.6 1.5 2 0 0 2 2 2 0 HAP1 N-terminal conserved region DUF1043 PF06295.12 gi|305663116|ref|YP_003859404.1| - 0.13 12.3 0.3 0.89 9.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) DUF3958 PF13125.6 gi|305663116|ref|YP_003859404.1| - 0.17 12.1 11.7 0.13 12.4 10.0 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF3958) DUF1664 PF07889.12 gi|305663116|ref|YP_003859404.1| - 0.24 11.4 7.4 3.1 7.8 0.5 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF16 PF01519.16 gi|305663116|ref|YP_003859404.1| - 0.26 11.8 5.7 0.22 12.0 3.6 2.0 2 1 0 2 2 1 0 Protein of unknown function DUF16 DUF1515 PF07439.11 gi|305663116|ref|YP_003859404.1| - 0.32 11.0 4.1 0.64 10.1 3.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) EMP24_GP25L PF01105.24 gi|305663116|ref|YP_003859404.1| - 0.48 10.3 4.9 2.2 8.2 1.1 2.2 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD FapA PF03961.13 gi|305663116|ref|YP_003859404.1| - 0.49 8.9 7.1 0.14 10.8 4.3 1.5 2 0 0 2 2 2 0 Flagellar Assembly Protein A GrpE PF01025.19 gi|305663116|ref|YP_003859404.1| - 0.93 9.1 7.0 1.4 8.6 4.2 2.2 2 0 0 2 2 2 0 GrpE SKA2 PF16740.5 gi|305663116|ref|YP_003859404.1| - 0.97 9.2 6.4 2.6 7.9 0.4 2.8 2 1 1 3 3 3 0 Spindle and kinetochore-associated protein 2 COG2 PF06148.11 gi|305663116|ref|YP_003859404.1| - 1.1 9.4 6.1 0.37 10.9 2.6 2.0 2 1 0 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 KxDL PF10241.9 gi|305663116|ref|YP_003859404.1| - 1.5 9.2 4.4 2.5 8.4 1.4 2.6 2 1 0 2 2 2 0 Uncharacterized conserved protein CENP-H PF05837.12 gi|305663116|ref|YP_003859404.1| - 2.1 8.8 8.6 0.83 10.1 2.6 2.6 2 1 1 3 3 3 0 Centromere protein H (CENP-H) CCDC-167 PF15188.6 gi|305663116|ref|YP_003859404.1| - 2.4 8.6 18.7 0.3 11.5 3.3 3.4 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 HisKA PF00512.25 gi|305663116|ref|YP_003859404.1| - 4 7.6 6.6 1.6e+02 2.4 6.3 3.1 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain YabA PF06156.13 gi|305663116|ref|YP_003859404.1| - 4.1 8.1 9.5 6.6 7.4 2.4 2.8 2 1 1 3 3 3 0 Initiation control protein YabA SlyX PF04102.12 gi|305663116|ref|YP_003859404.1| - 4.1 8.1 8.9 21 5.8 1.0 3.4 2 1 0 3 3 3 0 SlyX DUF3782 PF12644.7 gi|305663116|ref|YP_003859404.1| - 5.4 7.2 8.9 7.6e+02 0.4 8.9 2.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) TMF_TATA_bd PF12325.8 gi|305663116|ref|YP_003859404.1| - 8.2 6.7 16.2 8.4 6.7 11.8 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding ATPase_2 PF01637.18 gi|305663117|ref|YP_003859405.1| - 7.5e-55 186.4 0.6 9.8e-55 186.0 0.0 1.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|305663117|ref|YP_003859405.1| - 2.6e-05 24.7 0.0 0.00015 22.2 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.22 gi|305663117|ref|YP_003859405.1| - 0.0002 20.6 0.0 0.00044 19.5 0.0 1.5 1 1 0 1 1 1 1 NB-ARC domain AAA_14 PF13173.6 gi|305663117|ref|YP_003859405.1| - 0.0016 18.5 0.0 0.01 15.8 0.0 2.4 2 2 1 3 3 3 1 AAA domain Bac_DnaA PF00308.18 gi|305663117|ref|YP_003859405.1| - 0.0063 16.4 0.1 0.02 14.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_5 PF07728.14 gi|305663117|ref|YP_003859405.1| - 0.0083 16.1 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|305663117|ref|YP_003859405.1| - 0.0084 15.5 0.9 0.069 12.5 0.0 2.1 2 0 0 2 2 2 1 KaiC ATP_bind_1 PF03029.17 gi|305663117|ref|YP_003859405.1| - 0.011 15.5 0.0 0.054 13.3 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|305663117|ref|YP_003859405.1| - 0.012 16.1 0.0 0.025 15.0 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|305663117|ref|YP_003859405.1| - 0.019 15.2 0.0 0.041 14.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|305663117|ref|YP_003859405.1| - 0.021 14.8 0.0 0.086 12.7 0.0 2.1 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|305663117|ref|YP_003859405.1| - 0.027 14.9 0.0 0.066 13.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|305663117|ref|YP_003859405.1| - 0.028 14.0 0.0 1.8 8.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|305663117|ref|YP_003859405.1| - 0.051 13.1 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|305663117|ref|YP_003859405.1| - 0.073 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|305663117|ref|YP_003859405.1| - 0.078 13.5 0.0 0.17 12.4 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Adeno_IVa2 PF02456.15 gi|305663117|ref|YP_003859405.1| - 0.08 11.7 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_24 PF13479.6 gi|305663117|ref|YP_003859405.1| - 0.081 12.6 0.0 0.25 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|305663117|ref|YP_003859405.1| - 0.1 12.9 0.0 0.3 11.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain DAP3 PF10236.9 gi|305663117|ref|YP_003859405.1| - 0.24 10.5 0.0 0.52 9.4 0.0 1.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DUF3782 PF12644.7 gi|305663118|ref|YP_003859406.1| - 7.6e-29 99.7 16.7 9.2e-28 96.2 2.6 4.2 1 1 2 3 3 3 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|305663118|ref|YP_003859406.1| - 1.6e-20 72.8 1.1 3.3e-20 71.8 1.1 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF4618 PF15397.6 gi|305663118|ref|YP_003859406.1| - 0.00032 20.2 1.0 0.00051 19.6 1.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) TelA PF05816.11 gi|305663118|ref|YP_003859406.1| - 0.0011 18.1 5.6 0.028 13.5 2.3 2.1 1 1 1 2 2 2 2 Toxic anion resistance protein (TelA) TPR_MLP1_2 PF07926.12 gi|305663118|ref|YP_003859406.1| - 0.0012 18.9 3.6 0.0087 16.1 2.0 2.3 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein Exonuc_VII_L PF02601.15 gi|305663118|ref|YP_003859406.1| - 0.0016 18.1 0.7 0.0024 17.5 0.7 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit WXG100 PF06013.12 gi|305663118|ref|YP_003859406.1| - 0.004 17.3 0.3 10 6.4 0.0 3.4 2 2 1 3 3 3 0 Proteins of 100 residues with WXG Apolipoprotein PF01442.18 gi|305663118|ref|YP_003859406.1| - 0.0055 16.6 4.5 0.011 15.6 4.5 1.5 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain DLP_helical PF18709.1 gi|305663118|ref|YP_003859406.1| - 0.0074 15.5 9.7 0.17 11.0 9.7 2.2 1 1 0 1 1 1 1 Dynamin-like helical domain RmuC PF02646.16 gi|305663118|ref|YP_003859406.1| - 0.0081 15.3 2.4 0.46 9.6 0.2 2.5 1 1 0 2 2 2 1 RmuC family EzrA PF06160.12 gi|305663118|ref|YP_003859406.1| - 0.0086 14.3 10.1 0.044 12.0 5.5 1.9 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA BLOC1_2 PF10046.9 gi|305663118|ref|YP_003859406.1| - 0.01 16.1 0.8 5 7.5 0.1 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phlebovirus_NSM PF07246.11 gi|305663118|ref|YP_003859406.1| - 0.011 15.1 10.3 0.12 11.7 2.4 2.6 1 1 1 2 2 2 0 Phlebovirus nonstructural protein NS-M Atg14 PF10186.9 gi|305663118|ref|YP_003859406.1| - 0.012 14.7 5.5 0.035 13.2 0.9 2.1 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1664 PF07889.12 gi|305663118|ref|YP_003859406.1| - 0.013 15.5 2.3 0.56 10.2 0.5 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|305663118|ref|YP_003859406.1| - 0.014 14.3 6.7 0.029 13.2 6.7 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein TMPIT PF07851.13 gi|305663118|ref|YP_003859406.1| - 0.014 14.6 1.2 1.9 7.6 0.1 2.1 1 1 1 2 2 2 0 TMPIT-like protein Myb_DNA-bind_4 PF13837.6 gi|305663118|ref|YP_003859406.1| - 0.015 15.6 3.8 0.29 11.6 0.6 2.8 1 1 0 2 2 2 0 Myb/SANT-like DNA-binding domain AAA_13 PF13166.6 gi|305663118|ref|YP_003859406.1| - 0.016 13.8 3.0 0.022 13.5 3.0 1.1 1 0 0 1 1 1 0 AAA domain OmpH PF03938.14 gi|305663118|ref|YP_003859406.1| - 0.019 15.3 3.9 0.92 9.8 1.7 2.6 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) HBM PF16591.5 gi|305663118|ref|YP_003859406.1| - 0.022 14.2 1.7 0.51 9.7 0.2 2.3 1 1 1 2 2 2 0 Helical bimodular sensor domain Baculo_PEP_C PF04513.12 gi|305663118|ref|YP_003859406.1| - 0.023 14.8 0.0 3 7.9 0.0 2.3 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Tropomyosin PF00261.20 gi|305663118|ref|YP_003859406.1| - 0.023 14.0 15.5 0.18 11.2 15.5 2.3 1 1 0 1 1 1 0 Tropomyosin GAS PF13851.6 gi|305663118|ref|YP_003859406.1| - 0.024 14.0 10.0 0.066 12.5 6.8 2.5 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Phage_lysis PF03245.13 gi|305663118|ref|YP_003859406.1| - 0.025 14.7 1.6 8.1 6.6 0.1 3.1 1 1 1 3 3 3 0 Bacteriophage Rz lysis protein Sec3_C PF09763.9 gi|305663118|ref|YP_003859406.1| - 0.025 13.0 2.3 0.55 8.6 0.3 2.1 1 1 0 2 2 2 0 Exocyst complex component Sec3 DUF4795 PF16043.5 gi|305663118|ref|YP_003859406.1| - 0.03 13.9 13.4 1.5 8.4 2.4 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) KxDL PF10241.9 gi|305663118|ref|YP_003859406.1| - 0.039 14.2 5.5 2.4 8.5 0.7 3.4 1 1 2 3 3 3 0 Uncharacterized conserved protein DUF948 PF06103.11 gi|305663118|ref|YP_003859406.1| - 0.04 14.2 0.0 2.4 8.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) FAM184 PF15665.5 gi|305663118|ref|YP_003859406.1| - 0.051 13.3 11.8 0.25 11.1 11.8 2.0 1 1 0 1 1 1 0 Family with sequence similarity 184, A and B Syntaxin_2 PF14523.6 gi|305663118|ref|YP_003859406.1| - 0.059 13.7 1.7 0.27 11.6 1.3 2.3 1 1 0 1 1 1 0 Syntaxin-like protein DUF16 PF01519.16 gi|305663118|ref|YP_003859406.1| - 0.062 13.8 5.1 21 5.6 5.1 2.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 Golgin_A5 PF09787.9 gi|305663118|ref|YP_003859406.1| - 0.069 12.6 9.7 1.5 8.2 3.1 2.1 1 1 1 2 2 2 0 Golgin subfamily A member 5 AATF-Che1 PF13339.6 gi|305663118|ref|YP_003859406.1| - 0.07 13.8 0.7 2 9.1 0.7 2.5 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Tho2 PF11262.8 gi|305663118|ref|YP_003859406.1| - 0.08 12.1 5.0 0.038 13.2 0.9 1.9 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 HAUS6_N PF14661.6 gi|305663118|ref|YP_003859406.1| - 0.086 12.4 5.5 0.21 11.1 0.8 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus COG5 PF10392.9 gi|305663118|ref|YP_003859406.1| - 0.099 12.8 0.0 8.1 6.6 0.0 2.4 2 1 0 2 2 2 0 Golgi transport complex subunit 5 HMMR_N PF15905.5 gi|305663118|ref|YP_003859406.1| - 0.1 12.1 6.2 0.19 11.2 6.2 1.6 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Tox-ODYAM1 PF15642.6 gi|305663118|ref|YP_003859406.1| - 0.1 11.5 3.2 0.16 10.9 3.2 1.2 1 0 0 1 1 1 0 Toxin in Odyssella and Amoebophilus Fib_alpha PF08702.10 gi|305663118|ref|YP_003859406.1| - 0.12 12.5 1.5 4.3 7.5 0.2 2.3 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family Vac_Fusion PF02346.16 gi|305663118|ref|YP_003859406.1| - 0.13 12.0 13.7 0.19 11.4 3.3 3.4 2 1 1 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 HIP1_clath_bdg PF16515.5 gi|305663118|ref|YP_003859406.1| - 0.13 12.9 3.6 2.7 8.7 0.4 2.5 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 YabA PF06156.13 gi|305663118|ref|YP_003859406.1| - 0.13 12.9 8.3 3.6 8.3 1.7 3.8 1 1 1 3 3 3 0 Initiation control protein YabA TACC_C PF05010.14 gi|305663118|ref|YP_003859406.1| - 0.16 11.8 9.0 2 8.2 9.4 2.1 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Csm1_N PF18504.1 gi|305663118|ref|YP_003859406.1| - 0.19 12.1 7.1 25 5.3 0.4 4.2 1 1 4 5 5 4 0 Csm1 N-terminal domain YlbE PF14003.6 gi|305663118|ref|YP_003859406.1| - 0.21 12.1 5.7 9.4 6.8 0.1 3.9 2 1 1 3 3 3 0 YlbE-like protein YkyA PF10368.9 gi|305663118|ref|YP_003859406.1| - 0.21 11.3 7.7 0.22 11.2 4.0 2.1 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein XhlA PF10779.9 gi|305663118|ref|YP_003859406.1| - 0.21 11.8 11.8 0.44 10.8 1.2 3.2 2 1 1 3 3 3 0 Haemolysin XhlA Hemagglutinin PF00509.18 gi|305663118|ref|YP_003859406.1| - 0.22 9.9 2.6 3.6 5.9 0.3 2.2 1 1 1 2 2 2 0 Haemagglutinin CEP63 PF17045.5 gi|305663118|ref|YP_003859406.1| - 0.24 11.2 10.8 0.11 12.4 6.7 2.0 1 1 1 2 2 2 0 Centrosomal protein of 63 kDa Laminin_I PF06008.14 gi|305663118|ref|YP_003859406.1| - 0.27 10.9 3.7 0.45 10.2 3.7 1.3 1 0 0 1 1 1 0 Laminin Domain I DUF4455 PF14643.6 gi|305663118|ref|YP_003859406.1| - 0.3 9.7 12.2 1 7.9 4.3 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4455) Mt_ATP-synt_D PF05873.12 gi|305663118|ref|YP_003859406.1| - 0.32 10.9 4.1 6.9 6.5 0.3 3.0 2 1 0 3 3 3 0 ATP synthase D chain, mitochondrial (ATP5H) Nup88 PF10168.9 gi|305663118|ref|YP_003859406.1| - 0.39 8.5 6.4 0.57 7.9 6.4 1.2 1 0 0 1 1 1 0 Nuclear pore component DUF1515 PF07439.11 gi|305663118|ref|YP_003859406.1| - 0.44 10.6 8.2 5.5 7.1 0.6 3.6 1 1 0 2 2 2 0 Protein of unknown function (DUF1515) SKA2 PF16740.5 gi|305663118|ref|YP_003859406.1| - 0.49 10.2 2.5 12 5.7 0.2 2.7 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 2 PRKCSH_1 PF13015.6 gi|305663118|ref|YP_003859406.1| - 0.57 9.8 2.2 3.4 7.3 0.1 2.8 2 1 1 3 3 3 0 Glucosidase II beta subunit-like protein YscO-like PF16789.5 gi|305663118|ref|YP_003859406.1| - 0.64 10.0 13.8 1.9 8.5 13.8 1.7 1 1 0 1 1 1 0 YscO-like protein Prefoldin PF02996.17 gi|305663118|ref|YP_003859406.1| - 1 9.3 6.4 9.4 6.2 0.1 3.9 2 2 2 4 4 4 0 Prefoldin subunit Transcrip_act PF04949.13 gi|305663118|ref|YP_003859406.1| - 1.2 9.0 14.9 0.94 9.4 7.5 2.6 1 1 1 2 2 2 0 Transcriptional activator RPW8 PF05659.11 gi|305663118|ref|YP_003859406.1| - 1.6 8.4 5.0 5.8 6.6 0.6 2.7 1 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Jnk-SapK_ap_N PF09744.9 gi|305663118|ref|YP_003859406.1| - 1.8 8.7 11.5 0.81 9.9 4.0 2.3 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 TMF_TATA_bd PF12325.8 gi|305663118|ref|YP_003859406.1| - 2.3 8.5 12.2 4.4 7.6 4.9 2.9 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding WASH_WAHD PF11945.8 gi|305663118|ref|YP_003859406.1| - 2.5 7.6 6.5 10 5.5 1.6 2.2 2 0 0 2 2 2 0 WAHD domain of WASH complex Prefoldin_2 PF01920.20 gi|305663118|ref|YP_003859406.1| - 3.2 7.8 8.0 72 3.4 3.7 3.5 1 1 1 2 2 2 0 Prefoldin subunit Csm2_III-A PF03750.13 gi|305663118|ref|YP_003859406.1| - 3.3 8.6 7.4 2.7 8.9 4.7 2.1 1 1 1 2 2 2 0 Csm2 Type III-A Tropomyosin_1 PF12718.7 gi|305663118|ref|YP_003859406.1| - 3.8 7.7 13.1 0.55 10.4 8.6 2.0 2 1 0 2 2 1 0 Tropomyosin like CorA PF01544.18 gi|305663118|ref|YP_003859406.1| - 4.4 6.5 9.3 7.4 5.8 4.2 2.1 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Rootletin PF15035.6 gi|305663118|ref|YP_003859406.1| - 5.8 6.9 13.2 1.1 9.3 5.2 2.6 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF4200 PF13863.6 gi|305663118|ref|YP_003859406.1| - 7 7.1 17.6 2.1 8.8 1.3 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) MazE_antitoxin PF04014.18 gi|305663120|ref|YP_003859408.1| - 1.3e-11 44.1 0.5 1.7e-11 43.7 0.5 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Molydop_binding PF01568.21 gi|305663120|ref|YP_003859408.1| - 0.00073 19.5 0.0 0.00076 19.5 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Rho_RNA_bind PF07497.12 gi|305663120|ref|YP_003859408.1| - 0.0064 16.3 0.0 0.0073 16.2 0.0 1.2 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain CDC48_N PF02359.18 gi|305663120|ref|YP_003859408.1| - 0.023 14.8 0.0 0.03 14.5 0.0 1.1 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain SymE_toxin PF08845.10 gi|305663120|ref|YP_003859408.1| - 0.028 14.5 0.3 0.049 13.7 0.3 1.4 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system JmjN PF02375.17 gi|305663122|ref|YP_003859410.1| - 0.048 13.6 0.1 0.14 12.1 0.1 1.8 1 0 0 1 1 1 0 jmjN domain Pex14_N PF04695.13 gi|305663122|ref|YP_003859410.1| - 6.8 7.3 12.3 11 6.6 12.3 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF4795 PF16043.5 gi|305663123|ref|YP_003859411.1| - 8.8e-05 22.2 1.1 0.00052 19.7 0.2 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4795) HSBP1 PF06825.12 gi|305663123|ref|YP_003859411.1| - 0.00017 21.4 1.5 0.00039 20.2 1.5 1.6 1 0 0 1 1 1 1 Heat shock factor binding protein 1 Phlebovirus_NSM PF07246.11 gi|305663123|ref|YP_003859411.1| - 0.00017 21.0 1.2 0.00022 20.7 1.2 1.3 1 0 0 1 1 1 1 Phlebovirus nonstructural protein NS-M DUF1664 PF07889.12 gi|305663123|ref|YP_003859411.1| - 0.00018 21.5 3.9 0.1 12.6 1.3 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|305663123|ref|YP_003859411.1| - 0.00031 21.2 2.0 0.64 10.5 0.2 2.7 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein DUF2730 PF10805.8 gi|305663123|ref|YP_003859411.1| - 0.00048 20.2 9.2 0.023 14.8 0.9 3.4 1 1 3 4 4 4 2 Protein of unknown function (DUF2730) BRE1 PF08647.11 gi|305663123|ref|YP_003859411.1| - 0.00087 19.3 0.5 0.0013 18.8 0.5 1.3 1 0 0 1 1 1 1 BRE1 E3 ubiquitin ligase TMF_DNA_bd PF12329.8 gi|305663123|ref|YP_003859411.1| - 0.0013 18.7 0.6 0.0027 17.7 0.3 1.6 1 1 0 1 1 1 1 TATA element modulatory factor 1 DNA binding EzrA PF06160.12 gi|305663123|ref|YP_003859411.1| - 0.0013 17.0 4.8 0.0022 16.2 4.8 1.4 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA APG6_N PF17675.1 gi|305663123|ref|YP_003859411.1| - 0.0016 19.0 0.2 0.0022 18.5 0.2 1.3 1 1 0 1 1 1 1 Apg6 coiled-coil region Spc7 PF08317.11 gi|305663123|ref|YP_003859411.1| - 0.0019 17.2 1.2 0.0028 16.6 1.2 1.3 1 1 0 1 1 1 1 Spc7 kinetochore protein DUF3552 PF12072.8 gi|305663123|ref|YP_003859411.1| - 0.0029 17.1 3.2 0.0029 17.1 3.2 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF3552) bZIP_1 PF00170.21 gi|305663123|ref|YP_003859411.1| - 0.0048 17.0 0.6 0.18 11.9 0.1 2.5 2 1 0 2 2 2 1 bZIP transcription factor DUF4140 PF13600.6 gi|305663123|ref|YP_003859411.1| - 0.0082 16.6 3.1 0.57 10.6 0.7 2.6 1 1 1 2 2 2 1 N-terminal domain of unknown function (DUF4140) Cob_adeno_trans PF01923.18 gi|305663123|ref|YP_003859411.1| - 0.0094 16.1 0.1 0.038 14.1 0.1 1.8 1 1 1 2 2 2 1 Cobalamin adenosyltransferase TolA_bind_tri PF16331.5 gi|305663123|ref|YP_003859411.1| - 0.011 15.9 1.0 2.9 8.0 0.1 3.6 1 1 3 4 4 4 0 TolA binding protein trimerisation Fib_alpha PF08702.10 gi|305663123|ref|YP_003859411.1| - 0.012 15.8 1.2 0.022 14.9 1.1 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 gi|305663123|ref|YP_003859411.1| - 0.012 15.7 1.1 0.048 13.7 0.5 1.9 1 1 1 2 2 2 0 Laminin Domain II Prefoldin_2 PF01920.20 gi|305663123|ref|YP_003859411.1| - 0.014 15.3 1.3 0.43 10.5 0.3 2.8 1 1 0 1 1 1 0 Prefoldin subunit DUF16 PF01519.16 gi|305663123|ref|YP_003859411.1| - 0.017 15.6 2.7 0.082 13.4 2.7 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF16 ABC_tran_CTD PF16326.5 gi|305663123|ref|YP_003859411.1| - 0.018 15.3 0.9 0.14 12.5 0.1 2.6 1 1 2 3 3 3 0 ABC transporter C-terminal domain HMMR_N PF15905.5 gi|305663123|ref|YP_003859411.1| - 0.02 14.4 0.6 0.023 14.2 0.6 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal BLOC1_2 PF10046.9 gi|305663123|ref|YP_003859411.1| - 0.022 15.0 1.2 0.076 13.3 1.2 2.0 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-F_leu_zip PF10473.9 gi|305663123|ref|YP_003859411.1| - 0.024 14.7 2.1 0.094 12.7 1.3 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2721 PF11026.8 gi|305663123|ref|YP_003859411.1| - 0.026 14.4 0.2 0.051 13.5 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) Seryl_tRNA_N PF02403.22 gi|305663123|ref|YP_003859411.1| - 0.028 14.6 7.3 0.2 11.9 4.5 3.3 2 1 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain Syntaxin_2 PF14523.6 gi|305663123|ref|YP_003859411.1| - 0.031 14.6 1.3 0.72 10.3 0.5 2.7 1 1 1 2 2 2 0 Syntaxin-like protein PI3K_P85_iSH2 PF16454.5 gi|305663123|ref|YP_003859411.1| - 0.034 13.8 0.7 0.14 11.8 0.7 1.8 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2353 PF09789.9 gi|305663123|ref|YP_003859411.1| - 0.037 13.4 2.5 0.044 13.1 2.5 1.2 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) ZapB PF06005.12 gi|305663123|ref|YP_003859411.1| - 0.039 14.4 0.4 1.1 9.8 0.1 2.4 1 1 1 2 2 2 0 Cell division protein ZapB DivIC PF04977.15 gi|305663123|ref|YP_003859411.1| - 0.046 13.5 5.0 0.37 10.6 0.4 3.1 1 1 2 3 3 3 0 Septum formation initiator Baculo_PEP_C PF04513.12 gi|305663123|ref|YP_003859411.1| - 0.049 13.7 0.1 0.076 13.1 0.1 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Tweety PF04906.13 gi|305663123|ref|YP_003859411.1| - 0.065 11.9 0.2 0.072 11.7 0.2 1.1 1 0 0 1 1 1 0 Tweety TMF_TATA_bd PF12325.8 gi|305663123|ref|YP_003859411.1| - 0.067 13.4 1.1 0.33 11.2 0.6 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Snapin_Pallidin PF14712.6 gi|305663123|ref|YP_003859411.1| - 0.073 13.5 2.1 1.1 9.7 0.6 2.7 2 1 1 3 3 2 0 Snapin/Pallidin AAA_13 PF13166.6 gi|305663123|ref|YP_003859411.1| - 0.075 11.7 1.7 0.083 11.5 1.7 1.1 1 0 0 1 1 1 0 AAA domain CorA PF01544.18 gi|305663123|ref|YP_003859411.1| - 0.083 12.2 3.1 0.28 10.5 1.0 2.1 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein DUF4763 PF15960.5 gi|305663123|ref|YP_003859411.1| - 0.095 12.0 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) TPR_MLP1_2 PF07926.12 gi|305663123|ref|YP_003859411.1| - 0.12 12.4 0.2 0.42 10.7 0.1 1.9 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4988 PF16378.5 gi|305663123|ref|YP_003859411.1| - 0.13 12.0 1.7 0.4 10.3 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function Allexi_40kDa PF05549.11 gi|305663123|ref|YP_003859411.1| - 0.14 11.7 0.3 0.24 10.9 0.2 1.3 1 1 0 1 1 1 0 Allexivirus 40kDa protein DUF1640 PF07798.11 gi|305663123|ref|YP_003859411.1| - 0.14 12.2 3.4 0.26 11.3 3.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) Med9 PF07544.13 gi|305663123|ref|YP_003859411.1| - 0.15 12.1 2.3 0.42 10.7 1.1 2.2 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 TssO PF17561.2 gi|305663123|ref|YP_003859411.1| - 0.18 11.9 2.7 3.1 7.9 0.1 2.2 1 1 1 2 2 2 0 Type VI secretion system, TssO Prefoldin_3 PF13758.6 gi|305663123|ref|YP_003859411.1| - 0.2 11.7 6.2 1.5 8.9 5.9 2.5 1 1 1 2 2 2 0 Prefoldin subunit Qua1 PF16274.5 gi|305663123|ref|YP_003859411.1| - 0.22 11.4 5.2 2.6 7.9 0.5 3.6 2 1 1 3 3 3 0 Qua1 domain GTP-bdg_M PF16360.5 gi|305663123|ref|YP_003859411.1| - 0.22 12.1 4.2 1.4 9.6 0.9 2.7 1 1 0 2 2 2 0 GTP-binding GTPase Middle Region Rx_N PF18052.1 gi|305663123|ref|YP_003859411.1| - 0.23 11.7 6.0 13 6.2 4.9 3.2 1 1 2 3 3 3 0 Rx N-terminal domain DUF3349 PF11829.8 gi|305663123|ref|YP_003859411.1| - 0.28 12.0 3.1 3.8 8.3 0.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3349) FlaC_arch PF05377.11 gi|305663123|ref|YP_003859411.1| - 0.36 11.3 2.9 9.8 6.7 0.2 3.1 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) Atg14 PF10186.9 gi|305663123|ref|YP_003859411.1| - 0.44 9.6 1.9 0.63 9.1 1.9 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Phasin PF05597.11 gi|305663123|ref|YP_003859411.1| - 0.52 10.3 3.4 3.5 7.7 2.0 2.7 1 1 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) KxDL PF10241.9 gi|305663123|ref|YP_003859411.1| - 0.77 10.1 2.6 9 6.7 0.4 2.8 1 1 0 2 2 2 0 Uncharacterized conserved protein Csm1_N PF18504.1 gi|305663123|ref|YP_003859411.1| - 0.99 9.8 3.8 7.9 6.9 0.2 3.0 1 1 1 2 2 2 0 Csm1 N-terminal domain betaPIX_CC PF16523.5 gi|305663123|ref|YP_003859411.1| - 1.4 8.8 6.6 1.8 8.4 1.1 2.6 2 1 1 3 3 2 0 betaPIX coiled coil HalX PF08663.10 gi|305663123|ref|YP_003859411.1| - 1.5 9.2 6.5 23 5.4 3.3 3.2 2 1 0 2 2 2 0 HalX domain Transcrip_act PF04949.13 gi|305663123|ref|YP_003859411.1| - 2.9 7.8 10.6 1 9.2 3.1 2.1 1 1 1 2 2 2 0 Transcriptional activator XhlA PF10779.9 gi|305663123|ref|YP_003859411.1| - 4.2 7.6 11.4 0.95 9.7 5.6 2.9 1 1 1 2 2 2 0 Haemolysin XhlA TSC22 PF01166.18 gi|305663123|ref|YP_003859411.1| - 4.7 7.6 6.1 5.9 7.3 1.7 3.3 3 2 1 4 4 4 0 TSC-22/dip/bun family RIG-I_C PF18119.1 gi|305663124|ref|YP_003859412.1| - 0.073 13.1 0.4 0.31 11.1 0.0 1.8 1 1 1 2 2 2 0 RIG-I receptor C-terminal domain DUF2749 PF10907.8 gi|305663125|ref|YP_003859413.1| - 0.32 11.2 3.2 0.81 9.9 3.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) LEA_2 PF03168.13 gi|305663126|ref|YP_003859414.1| - 2e-06 28.3 0.0 0.017 15.6 0.0 2.7 2 1 1 3 3 3 2 Late embryogenesis abundant protein DMT_6 PF04342.12 gi|305663126|ref|YP_003859414.1| - 0.0045 17.2 0.0 5.4 7.3 0.0 2.7 2 0 0 2 2 2 2 Putative member of DMT superfamily (DUF486) DEAD PF00270.29 gi|305663128|ref|YP_003859416.1| - 0.0048 16.7 0.0 0.014 15.2 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|305663128|ref|YP_003859416.1| - 0.028 14.8 0.0 0.056 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|305663128|ref|YP_003859416.1| - 0.051 13.8 0.0 0.3 11.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain PaREP1 PF05942.11 gi|305663131|ref|YP_003859419.1| - 1.8e-05 24.6 0.8 6.5e-05 22.8 0.8 1.8 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|305663131|ref|YP_003859419.1| - 0.00014 22.0 0.0 0.00019 21.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5618) GPI PF06560.11 gi|305663134|ref|YP_003859422.1| - 0.066 12.5 0.0 0.074 12.3 0.0 1.1 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) Piwi PF02171.17 gi|305663136|ref|YP_003859424.1| - 1.2e-05 24.7 0.1 3.5e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Piwi domain HATPase_c_3 PF13589.6 gi|305663140|ref|YP_003859428.1| - 1.6e-09 37.7 0.1 7e-09 35.6 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3883 PF13020.6 gi|305663140|ref|YP_003859428.1| - 0.00058 19.8 0.4 0.0054 16.7 0.1 2.6 1 1 1 2 2 2 1 Domain of unknown function (DUF3883) HATPase_c PF02518.26 gi|305663140|ref|YP_003859428.1| - 0.0061 17.1 0.1 0.034 14.7 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2046 PF09755.9 gi|305663140|ref|YP_003859428.1| - 0.86 8.8 14.2 0.21 10.8 6.7 2.7 2 1 0 3 3 3 0 Uncharacterized conserved protein H4 (DUF2046) Metallophos PF00149.28 gi|305663143|ref|YP_003859431.1| - 1.8e-07 31.9 0.0 0.0028 18.2 0.0 2.3 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|305663143|ref|YP_003859431.1| - 0.0069 16.6 0.0 0.11 12.7 0.0 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Pribosyltran PF00156.27 gi|305663146|ref|YP_003859434.1| - 0.0031 17.0 0.1 0.0096 15.5 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain KH_10 PF17905.1 gi|305663146|ref|YP_003859434.1| - 0.037 14.5 0.2 0.083 13.3 0.2 1.6 1 0 0 1 1 1 0 GLD-3 KH domain 5 Ral PF11058.8 gi|305663146|ref|YP_003859434.1| - 0.076 12.6 0.2 10 5.8 0.1 2.5 2 0 0 2 2 2 0 Antirestriction protein Ral N6_Mtase PF02384.16 gi|305663147|ref|YP_003859435.1| - 6.8e-21 74.8 0.0 9.6e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_25 PF13649.6 gi|305663147|ref|YP_003859435.1| - 5.4e-07 30.2 0.0 1.7e-06 28.7 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|305663147|ref|YP_003859435.1| - 1e-05 25.3 0.0 2.3e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|305663147|ref|YP_003859435.1| - 0.00017 21.2 0.0 0.0003 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Eco57I PF07669.11 gi|305663147|ref|YP_003859435.1| - 0.00021 21.8 0.0 0.00045 20.7 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_11 PF08241.12 gi|305663147|ref|YP_003859435.1| - 0.00078 20.1 0.0 0.0031 18.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain TaqI_C PF12950.7 gi|305663147|ref|YP_003859435.1| - 0.0017 18.4 0.0 0.0076 16.3 0.0 2.1 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain Methyltransf_12 PF08242.12 gi|305663147|ref|YP_003859435.1| - 0.068 13.9 0.0 0.19 12.5 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain RE_AccI PF09545.10 gi|305663148|ref|YP_003859436.1| - 6e-19 68.2 0.5 1.3e-13 50.7 0.0 2.0 1 1 1 2 2 2 2 AccI restriction endonuclease DnaB PF00772.21 gi|305663148|ref|YP_003859436.1| - 0.13 12.3 0.1 22 5.2 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase N terminal domain Lactamase_B_2 PF12706.7 gi|305663149|ref|YP_003859437.1| - 1.3e-07 31.3 0.0 7.1e-07 28.9 0.0 2.1 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|305663149|ref|YP_003859437.1| - 1.6e-07 31.5 0.9 4.3e-07 30.1 0.9 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|305663149|ref|YP_003859437.1| - 9.6e-05 22.3 0.1 0.00024 21.0 0.1 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_3 PF13483.6 gi|305663149|ref|YP_003859437.1| - 0.00053 19.9 0.0 0.002 18.0 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DRMBL PF07522.14 gi|305663149|ref|YP_003859437.1| - 0.01 16.0 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase DUF3883 PF13020.6 gi|305663150|ref|YP_003859438.1| - 2.7e-19 69.0 0.2 6.7e-18 64.5 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF3883) Helicase_C PF00271.31 gi|305663150|ref|YP_003859438.1| - 7.5e-15 55.2 0.1 3.1e-14 53.3 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|305663150|ref|YP_003859438.1| - 1.4e-13 50.4 0.0 6.4e-13 48.1 0.0 1.9 1 1 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|305663150|ref|YP_003859438.1| - 6.7e-10 39.2 0.0 2e-09 37.7 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|305663150|ref|YP_003859438.1| - 8.9e-07 28.8 0.0 6.6e-06 26.0 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA PF00004.29 gi|305663150|ref|YP_003859438.1| - 0.00069 20.0 0.1 0.041 14.3 0.0 3.4 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|305663150|ref|YP_003859438.1| - 0.044 13.0 0.0 0.072 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KH_5 PF13184.6 gi|305663150|ref|YP_003859438.1| - 0.069 13.2 0.0 0.35 11.0 0.0 2.2 1 0 0 1 1 1 0 NusA-like KH domain SWI2_SNF2 PF18766.1 gi|305663150|ref|YP_003859438.1| - 0.095 12.3 0.0 0.27 10.9 0.0 1.8 1 0 0 1 1 1 0 SWI2/SNF2 ATPase ERCC3_RAD25_C PF16203.5 gi|305663150|ref|YP_003859438.1| - 0.16 11.2 0.0 0.59 9.3 0.0 1.9 1 1 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase DUF499 PF04465.12 gi|305663152|ref|YP_003859440.1| - 2.3e-170 568.7 9.7 3.2e-170 568.2 9.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF499) DUF1156 PF06634.12 gi|305663153|ref|YP_003859441.1| - 2e-12 47.0 0.3 1.4e-11 44.3 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1156) Cons_hypoth95 PF03602.15 gi|305663153|ref|YP_003859441.1| - 9.9e-07 28.6 0.0 0.0032 17.1 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|305663153|ref|YP_003859441.1| - 0.0022 17.7 0.0 1.2 8.8 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 zinc_ribbon_4 PF13717.6 gi|305663153|ref|YP_003859441.1| - 0.098 12.6 0.8 6.3 6.8 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain EVE PF01878.18 gi|305663154|ref|YP_003859442.1| - 7e-13 48.8 0.1 8.6e-13 48.5 0.1 1.1 1 0 0 1 1 1 1 EVE domain OKR_DC_1_N PF03709.15 gi|305663155|ref|YP_003859443.1| - 0.0068 16.7 0.0 0.0095 16.2 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain Acetyltransf_9 PF13527.7 gi|305663155|ref|YP_003859443.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Gly-zipper_Omp PF13488.6 gi|305663156|ref|YP_003859444.1| - 0.0023 17.9 9.9 0.0031 17.5 9.9 1.2 1 0 0 1 1 1 1 Glycine zipper TraT PF05818.12 gi|305663156|ref|YP_003859444.1| - 0.0078 15.9 0.4 0.0088 15.8 0.4 1.1 1 0 0 1 1 1 1 Enterobacterial TraT complement resistance protein Gly-zipper_YMGG PF13441.6 gi|305663156|ref|YP_003859444.1| - 0.096 12.4 10.5 0.23 11.3 10.5 1.6 1 1 0 1 1 1 0 YMGG-like Gly-zipper Ribosomal_L19e PF01280.20 gi|305663156|ref|YP_003859444.1| - 0.11 12.6 0.1 0.14 12.3 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L19e DUF456 PF04306.13 gi|305663156|ref|YP_003859444.1| - 0.12 12.6 5.9 0.19 12.0 5.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF456) Romo1 PF10247.9 gi|305663156|ref|YP_003859444.1| - 3 8.3 12.1 0.15 12.5 3.7 2.2 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Rick_17kDa_Anti PF05433.15 gi|305663156|ref|YP_003859444.1| - 4.9 7.1 13.6 18 5.3 13.5 2.0 1 1 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_OmpA PF13436.6 gi|305663156|ref|YP_003859444.1| - 7.3 6.5 11.0 22 4.9 11.0 1.8 1 1 0 1 1 1 0 Glycine-zipper domain DUF1269 PF06897.12 gi|305663156|ref|YP_003859444.1| - 7.5 6.9 6.6 57 4.1 6.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1269) HEPN_Apea PF18739.1 gi|305663157|ref|YP_003859445.1| - 0.087 13.3 5.3 0.088 13.3 0.3 2.8 1 1 1 2 2 2 0 Apea-like HEPN BfiI_DBD PF18243.1 gi|305663158|ref|YP_003859446.1| - 0.071 12.7 0.6 0.13 11.8 0.6 1.4 1 0 0 1 1 1 0 Metal-independent restriction enzyme BfiI DNA binding domain BofA PF07441.11 gi|305663163|ref|YP_003859451.1| - 0.24 11.6 10.1 0.34 11.1 0.1 2.6 2 0 0 2 2 2 0 SigmaK-factor processing regulatory protein BofA DUF5392 PF17370.2 gi|305663163|ref|YP_003859451.1| - 0.7 10.0 2.2 4 7.5 0.0 2.6 2 1 1 3 3 3 0 Family of unknown function (DUF5392) UbiA PF01040.18 gi|305663163|ref|YP_003859451.1| - 1 8.6 11.0 0.71 9.1 2.5 2.1 1 1 0 2 2 2 0 UbiA prenyltransferase family AbiEi_4 PF13338.6 gi|305663164|ref|YP_003859452.1| - 0.0064 16.6 2.3 0.015 15.5 0.3 2.6 3 0 0 3 3 3 1 Transcriptional regulator, AbiEi antitoxin HTH_27 PF13463.6 gi|305663164|ref|YP_003859452.1| - 0.18 12.3 0.5 1.4 9.5 0.0 2.7 2 1 1 3 3 3 0 Winged helix DNA-binding domain REGB_T4 PF10715.9 gi|305663166|ref|YP_003859454.1| - 0.018 15.3 0.6 0.023 14.9 0.6 1.2 1 0 0 1 1 1 0 T4-page Endoribonuclease RegB Med28 PF11594.8 gi|305663166|ref|YP_003859454.1| - 0.028 14.5 0.1 0.029 14.5 0.1 1.2 1 0 0 1 1 1 0 Mediator complex subunit 28 Transglut_core PF01841.19 gi|305663167|ref|YP_003859455.1| - 0.034 14.6 0.0 0.035 14.6 0.0 1.0 1 0 0 1 1 1 0 Transglutaminase-like superfamily PIN PF01850.21 gi|305663170|ref|YP_003859458.1| - 4.8e-09 36.8 0.0 3.3e-07 30.8 0.0 2.2 1 1 0 1 1 1 1 PIN domain Antimicrobial_6 PF08036.11 gi|305663170|ref|YP_003859458.1| - 0.049 13.7 1.0 0.079 13.0 1.0 1.3 1 0 0 1 1 1 0 Diapausin family of antimicrobial peptide Toxin_GhoT_OrtT PF10753.9 gi|305663170|ref|YP_003859458.1| - 0.079 13.2 0.5 17 5.7 0.0 2.4 2 0 0 2 2 2 0 Toxin GhoT_OrtT ABC_tran PF00005.27 gi|305663173|ref|YP_003859461.1| - 5.8e-26 91.6 0.0 8.9e-26 91.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663173|ref|YP_003859461.1| - 3e-10 40.4 0.4 4.9e-05 23.3 0.1 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|305663173|ref|YP_003859461.1| - 7.7e-06 26.5 0.0 1.4e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|305663173|ref|YP_003859461.1| - 8.4e-05 22.2 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|305663173|ref|YP_003859461.1| - 0.00082 19.2 0.0 0.016 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|305663173|ref|YP_003859461.1| - 0.0033 16.9 0.2 0.022 14.2 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|305663173|ref|YP_003859461.1| - 0.0044 17.4 0.0 0.01 16.2 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|305663173|ref|YP_003859461.1| - 0.0058 16.2 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|305663173|ref|YP_003859461.1| - 0.0087 16.3 0.1 0.052 13.8 0.1 2.1 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|305663173|ref|YP_003859461.1| - 0.013 14.5 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|305663173|ref|YP_003859461.1| - 0.028 14.6 0.1 0.09 12.9 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|305663173|ref|YP_003859461.1| - 0.028 14.1 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|305663173|ref|YP_003859461.1| - 0.048 13.7 0.1 0.58 10.2 0.0 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|305663173|ref|YP_003859461.1| - 0.059 13.3 0.0 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA PF00004.29 gi|305663173|ref|YP_003859461.1| - 0.075 13.5 0.0 0.24 11.8 0.0 2.1 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|305663173|ref|YP_003859461.1| - 0.081 12.8 0.2 0.27 11.1 0.2 2.0 1 1 0 1 1 1 0 NTPase Mg_chelatase PF01078.21 gi|305663173|ref|YP_003859461.1| - 0.081 12.3 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|305663173|ref|YP_003859461.1| - 0.093 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|305663173|ref|YP_003859461.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain cobW PF02492.19 gi|305663173|ref|YP_003859461.1| - 0.19 11.3 0.0 0.31 10.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|305663173|ref|YP_003859461.1| - 0.25 9.9 0.0 0.84 8.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain Kelch_1 PF01344.25 gi|305663174|ref|YP_003859462.1| - 0.047 13.3 1.1 0.33 10.6 0.2 2.7 2 0 0 2 2 2 0 Kelch motif UL97 PF06734.12 gi|305663175|ref|YP_003859463.1| - 0.051 13.5 0.0 0.066 13.1 0.0 1.2 1 0 0 1 1 1 0 UL97 UPF0175 PF03683.13 gi|305663177|ref|YP_003859465.1| - 1.4e-07 31.1 0.0 2.9e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DctP PF03480.13 gi|305663177|ref|YP_003859465.1| - 0.11 11.9 0.0 0.21 10.9 0.0 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 DUF3368 PF11848.8 gi|305663178|ref|YP_003859466.1| - 0.0009 19.0 0.4 0.0018 18.0 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) PIN_9 PF18477.1 gi|305663178|ref|YP_003859466.1| - 0.014 15.7 0.7 4.9 7.5 0.2 2.4 2 0 0 2 2 2 0 PIN like domain ATPase PF06745.13 gi|305663178|ref|YP_003859466.1| - 0.022 14.1 0.2 0.039 13.3 0.1 1.5 2 0 0 2 2 2 0 KaiC MS_channel PF00924.18 gi|305663179|ref|YP_003859467.1| - 2.3e-54 184.1 1.2 3.2e-54 183.6 1.2 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF432 PF04254.13 gi|305663180|ref|YP_003859468.1| - 1.8e-33 115.3 0.1 2.8e-33 114.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF432) ABC_tran PF00005.27 gi|305663182|ref|YP_003859470.1| - 2.5e-24 86.3 0.0 3.6e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663182|ref|YP_003859470.1| - 1.4e-11 44.8 0.4 0.00012 22.1 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663182|ref|YP_003859470.1| - 2.6e-08 33.6 0.0 4.7e-05 22.9 0.0 2.4 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|305663182|ref|YP_003859470.1| - 0.00032 21.1 0.0 0.00048 20.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|305663182|ref|YP_003859470.1| - 0.00055 20.1 0.0 0.0013 18.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|305663182|ref|YP_003859470.1| - 0.0011 18.9 0.1 0.086 12.7 0.1 2.3 2 0 0 2 2 2 1 NTPase Zeta_toxin PF06414.12 gi|305663182|ref|YP_003859470.1| - 0.0026 17.1 0.0 0.0043 16.4 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|305663182|ref|YP_003859470.1| - 0.0029 18.1 0.0 0.0047 17.4 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|305663182|ref|YP_003859470.1| - 0.0064 16.2 0.2 0.032 14.0 0.0 2.0 3 0 0 3 3 2 1 AAA domain AAA_29 PF13555.6 gi|305663182|ref|YP_003859470.1| - 0.0067 16.1 0.1 0.013 15.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|305663182|ref|YP_003859470.1| - 0.0087 16.6 0.2 0.014 15.9 0.2 1.2 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|305663182|ref|YP_003859470.1| - 0.025 14.6 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|305663182|ref|YP_003859470.1| - 0.036 14.3 0.0 0.11 12.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|305663182|ref|YP_003859470.1| - 0.038 13.6 0.0 0.057 13.0 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|305663182|ref|YP_003859470.1| - 0.05 13.5 0.3 0.26 11.2 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_7 PF12775.7 gi|305663182|ref|YP_003859470.1| - 0.052 13.0 0.0 0.078 12.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF3584 PF12128.8 gi|305663182|ref|YP_003859470.1| - 0.077 10.5 0.1 0.11 10.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 gi|305663182|ref|YP_003859470.1| - 0.082 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_19 PF13245.6 gi|305663182|ref|YP_003859470.1| - 0.083 13.2 0.1 1.6 9.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|305663182|ref|YP_003859470.1| - 0.083 13.1 0.2 0.17 12.1 0.1 1.5 2 0 0 2 2 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_28 PF13521.6 gi|305663182|ref|YP_003859470.1| - 0.11 12.8 0.0 0.46 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|305663182|ref|YP_003859470.1| - 0.12 12.2 0.3 3 7.6 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|305663182|ref|YP_003859470.1| - 0.12 11.9 0.2 0.86 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|305663182|ref|YP_003859470.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|305663182|ref|YP_003859470.1| - 0.16 12.0 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DEAD PF00270.29 gi|305663182|ref|YP_003859470.1| - 0.17 11.6 0.0 20 4.9 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase SRP54 PF00448.22 gi|305663182|ref|YP_003859470.1| - 0.19 11.4 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 gi|305663182|ref|YP_003859470.1| - 0.2 11.0 0.0 0.79 9.1 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Gtr1_RagA PF04670.12 gi|305663182|ref|YP_003859470.1| - 0.2 11.0 0.0 0.3 10.4 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region PduV-EutP PF10662.9 gi|305663182|ref|YP_003859470.1| - 0.2 11.4 0.1 0.33 10.7 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Amastin PF07344.11 gi|305663183|ref|YP_003859471.1| - 8.4 6.2 11.3 40 4.0 11.3 2.0 1 1 0 1 1 1 0 Amastin surface glycoprotein Spore_YhaL PF14147.6 gi|305663184|ref|YP_003859472.1| - 0.56 9.9 2.1 1.1 9.0 2.1 1.5 1 0 0 1 1 1 0 Sporulation protein YhaL Mrr_cat PF04471.12 gi|305663185|ref|YP_003859473.1| - 1.1e-12 48.0 0.1 2.5e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 Restriction endonuclease NERD PF08378.11 gi|305663185|ref|YP_003859473.1| - 7.2e-06 26.4 0.3 1.6e-05 25.4 0.3 1.6 1 0 0 1 1 1 1 Nuclease-related domain TrmB PF01978.19 gi|305663185|ref|YP_003859473.1| - 1.5e-05 24.8 0.1 4.1e-05 23.4 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.11 gi|305663185|ref|YP_003859473.1| - 6.4e-05 22.9 0.7 0.00015 21.7 0.1 1.9 2 0 0 2 2 1 1 Sulfolobus plasmid regulatory protein DUF3489 PF11994.8 gi|305663185|ref|YP_003859473.1| - 0.00024 21.1 0.1 0.00046 20.2 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) HTH_20 PF12840.7 gi|305663185|ref|YP_003859473.1| - 0.00028 20.9 0.0 0.00065 19.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|305663185|ref|YP_003859473.1| - 0.00055 19.7 0.0 0.00099 18.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|305663185|ref|YP_003859473.1| - 0.0016 18.3 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|305663185|ref|YP_003859473.1| - 0.0019 18.0 2.5 0.032 14.1 0.1 2.7 3 0 0 3 3 2 1 TFIIE alpha subunit Penicillinase_R PF03965.16 gi|305663185|ref|YP_003859473.1| - 0.0023 18.3 0.4 0.005 17.2 0.4 1.6 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.22 gi|305663185|ref|YP_003859473.1| - 0.0034 17.3 0.1 0.0063 16.4 0.1 1.5 1 0 0 1 1 1 1 MarR family DUF1803 PF08820.10 gi|305663185|ref|YP_003859473.1| - 0.0039 17.2 0.0 0.009 16.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1803) HTH_27 PF13463.6 gi|305663185|ref|YP_003859473.1| - 0.0086 16.6 0.2 0.026 15.0 0.1 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|305663185|ref|YP_003859473.1| - 0.018 14.6 0.1 0.036 13.6 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Ribosomal_L23 PF00276.20 gi|305663185|ref|YP_003859473.1| - 0.049 14.0 0.3 0.21 12.0 0.3 2.0 1 0 0 1 1 1 0 Ribosomal protein L23 Rrf2 PF02082.20 gi|305663185|ref|YP_003859473.1| - 0.054 13.9 0.1 0.5 10.7 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator HTH_36 PF13730.6 gi|305663185|ref|YP_003859473.1| - 0.064 13.2 0.2 0.19 11.7 0.2 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|305663185|ref|YP_003859473.1| - 0.12 12.4 0.0 0.39 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF3300 PF11737.8 gi|305663185|ref|YP_003859473.1| - 0.14 11.6 0.1 3.6 7.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3300) DUF4065 PF13274.6 gi|305663186|ref|YP_003859474.1| - 3.3e-10 40.8 0.0 1e-09 39.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF4065) YtxC PF08812.11 gi|305663186|ref|YP_003859474.1| - 0.0063 16.1 0.1 0.078 12.6 0.0 2.1 2 0 0 2 2 2 1 YtxC-like family DUF496 PF04363.12 gi|305663186|ref|YP_003859474.1| - 0.018 15.1 1.1 0.037 14.1 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF496) DUF3631 PF12307.8 gi|305663186|ref|YP_003859474.1| - 0.064 13.5 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3631) TPR_6 PF13174.6 gi|305663186|ref|YP_003859474.1| - 0.16 12.7 0.4 1.8 9.3 0.0 2.9 4 0 0 4 4 4 0 Tetratricopeptide repeat ASL_C PF08328.11 gi|305663192|ref|YP_003859480.1| - 0.051 13.7 0.3 0.091 12.9 0.2 1.4 1 1 0 1 1 1 0 Adenylosuccinate lyase C-terminal DUF4065 PF13274.6 gi|305663193|ref|YP_003859481.1| - 2.8e-21 76.5 0.0 3.8e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4065) FANCI_S4 PF14678.6 gi|305663194|ref|YP_003859482.1| - 0.018 14.2 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 FANCI solenoid 4 IRF-3 PF10401.9 gi|305663194|ref|YP_003859482.1| - 0.022 14.5 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 Interferon-regulatory factor 3 Endonuc-PvuII PF09225.10 gi|305663194|ref|YP_003859482.1| - 0.03 14.1 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease PvuII AAA_15 PF13175.6 gi|305663198|ref|YP_003859486.1| - 1.7e-27 97.1 12.5 2e-26 93.6 12.5 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|305663198|ref|YP_003859486.1| - 1.9e-16 60.7 7.5 7.6e-13 48.9 0.3 2.7 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 gi|305663198|ref|YP_003859486.1| - 0.0012 18.2 2.4 0.045 13.0 0.0 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|305663198|ref|YP_003859486.1| - 0.022 15.3 0.2 0.022 15.3 0.2 2.4 1 1 1 2 2 2 0 AAA domain SMC_N PF02463.19 gi|305663198|ref|YP_003859486.1| - 0.032 13.7 0.0 0.078 12.4 0.0 1.6 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF86 PF01934.17 gi|305663199|ref|YP_003859487.1| - 5.8e-18 64.9 0.3 9.9e-18 64.1 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|305663199|ref|YP_003859487.1| - 5.2e-13 48.9 0.0 1.6e-12 47.4 0.0 1.8 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|305663199|ref|YP_003859487.1| - 0.00059 20.1 1.2 0.0031 17.8 0.1 2.4 2 1 0 2 2 2 1 Nucleotidyltransferase domain ATPase_2 PF01637.18 gi|305663200|ref|YP_003859488.1| - 2.4e-52 178.2 0.1 4.2e-52 177.4 0.1 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|305663200|ref|YP_003859488.1| - 2e-06 27.2 0.0 5.7e-06 25.7 0.0 1.8 1 1 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.6 gi|305663200|ref|YP_003859488.1| - 0.00011 22.6 0.0 0.00027 21.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|305663200|ref|YP_003859488.1| - 0.0074 16.7 0.0 0.03 14.7 0.0 2.0 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|305663200|ref|YP_003859488.1| - 0.014 15.1 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain PBECR2 PF18810.1 gi|305663200|ref|YP_003859488.1| - 0.021 15.1 0.3 0.048 13.9 0.3 1.6 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 AAA_22 PF13401.6 gi|305663200|ref|YP_003859488.1| - 0.03 14.6 0.0 0.078 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain Nod1 PF17114.5 gi|305663200|ref|YP_003859488.1| - 0.034 14.3 0.2 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 Gef2-related medial cortical node protein Nod1 RNA_helicase PF00910.22 gi|305663200|ref|YP_003859488.1| - 0.044 14.2 0.0 0.15 12.4 0.0 2.0 1 1 1 2 2 2 0 RNA helicase AAA_24 PF13479.6 gi|305663200|ref|YP_003859488.1| - 0.06 13.1 0.0 0.094 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|305663200|ref|YP_003859488.1| - 0.09 12.8 0.0 0.24 11.4 0.0 1.8 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|305663200|ref|YP_003859488.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.6 2 0 0 2 2 2 0 NACHT domain Bac_DnaA PF00308.18 gi|305663200|ref|YP_003859488.1| - 0.16 11.8 0.1 0.76 9.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial dnaA protein Mg_chelatase PF01078.21 gi|305663200|ref|YP_003859488.1| - 0.16 11.3 0.0 0.49 9.7 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|305663200|ref|YP_003859488.1| - 0.2 12.1 0.1 0.74 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF2561 PF10812.8 gi|305663201|ref|YP_003859489.1| - 0.035 14.1 0.6 0.054 13.5 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2561) RIFIN PF02009.16 gi|305663201|ref|YP_003859489.1| - 0.9 9.4 7.5 0.24 11.2 4.3 1.6 2 0 0 2 2 2 0 Rifin Renin_r PF07850.14 gi|305663201|ref|YP_003859489.1| - 1.5 9.5 4.9 0.89 10.2 1.0 2.3 2 0 0 2 2 2 0 Renin receptor-like protein Cyt_bd_oxida_II PF02322.15 gi|305663201|ref|YP_003859489.1| - 1.5 8.1 4.6 2.6 7.3 4.6 1.3 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II ASFV_J13L PF05568.11 gi|305663201|ref|YP_003859489.1| - 8.5 6.1 6.1 1.2 8.9 1.4 1.8 2 0 0 2 2 2 0 African swine fever virus J13L protein ATPase_2 PF01637.18 gi|305663202|ref|YP_003859490.1| - 2e-45 155.5 0.0 3.7e-45 154.7 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|305663202|ref|YP_003859490.1| - 2.9e-05 23.4 0.0 0.0016 17.6 0.0 2.4 2 1 0 2 2 2 1 NB-ARC domain AAA PF00004.29 gi|305663202|ref|YP_003859490.1| - 0.0072 16.7 0.0 0.019 15.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|305663202|ref|YP_003859490.1| - 0.0081 16.6 0.0 0.029 14.8 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|305663202|ref|YP_003859490.1| - 0.031 14.2 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|305663202|ref|YP_003859490.1| - 0.032 14.6 0.0 0.089 13.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.6 gi|305663202|ref|YP_003859490.1| - 0.081 13.2 0.0 0.18 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|305663202|ref|YP_003859490.1| - 0.11 11.8 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_24 PF13479.6 gi|305663202|ref|YP_003859490.1| - 0.11 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|305663202|ref|YP_003859490.1| - 0.15 11.5 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_15 PF13175.6 gi|305663203|ref|YP_003859491.1| - 0.018 14.8 0.1 0.018 14.8 0.1 1.1 1 0 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|305663204|ref|YP_003859492.1| - 1.5e-52 178.9 0.1 2.9e-52 177.9 0.0 1.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|305663204|ref|YP_003859492.1| - 3.1e-06 27.7 0.0 3.3e-05 24.3 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|305663204|ref|YP_003859492.1| - 0.0003 21.2 0.0 0.0018 18.7 0.0 2.3 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) SieB PF14163.6 gi|305663204|ref|YP_003859492.1| - 0.013 15.0 0.6 0.025 14.1 0.6 1.4 1 0 0 1 1 1 0 Super-infection exclusion protein B NB-ARC PF00931.22 gi|305663204|ref|YP_003859492.1| - 0.018 14.3 0.0 0.1 11.8 0.0 2.1 2 1 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|305663204|ref|YP_003859492.1| - 0.034 14.1 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|305663204|ref|YP_003859492.1| - 0.042 13.6 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|305663204|ref|YP_003859492.1| - 0.06 13.5 0.0 0.098 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|305663204|ref|YP_003859492.1| - 0.1 12.9 0.0 0.22 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|305663204|ref|YP_003859492.1| - 0.11 12.5 0.1 0.33 11.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|305663204|ref|YP_003859492.1| - 0.17 11.6 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|305663204|ref|YP_003859492.1| - 0.2 12.1 0.0 0.39 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MazE_antitoxin PF04014.18 gi|305663206|ref|YP_003859494.1| - 2.9e-11 43.0 0.2 4.8e-11 42.3 0.2 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MFS_1 PF07690.16 gi|305663207|ref|YP_003859495.1| - 8.1e-23 80.9 50.6 8.1e-23 80.9 50.6 1.5 1 1 1 2 2 2 1 Major Facilitator Superfamily ABC2_membrane_3 PF12698.7 gi|305663208|ref|YP_003859496.1| - 2.4e-32 112.4 18.7 2.9e-32 112.1 18.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|305663208|ref|YP_003859496.1| - 1.6e-21 76.7 18.5 4.6e-21 75.2 13.5 2.3 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|305663208|ref|YP_003859496.1| - 1.8e-15 57.0 23.0 5.7e-15 55.4 23.0 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|305663208|ref|YP_003859496.1| - 0.00034 20.6 4.1 0.00034 20.6 4.1 2.7 3 0 0 3 3 3 1 ABC-2 family transporter protein UPF0016 PF01169.19 gi|305663208|ref|YP_003859496.1| - 0.24 11.8 10.6 0.18 12.1 3.9 2.8 2 0 0 2 2 2 0 Uncharacterized protein family UPF0016 CbtB PF09489.10 gi|305663208|ref|YP_003859496.1| - 6.6 6.9 6.2 32 4.7 1.7 3.0 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) ABC_tran PF00005.27 gi|305663209|ref|YP_003859497.1| - 1.5e-27 96.8 0.0 2.6e-27 96.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663209|ref|YP_003859497.1| - 8.5e-14 52.1 0.2 1.2e-07 31.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|305663209|ref|YP_003859497.1| - 1e-05 26.2 0.0 2.7e-05 24.8 0.0 1.8 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|305663209|ref|YP_003859497.1| - 0.0015 18.0 0.0 0.93 8.9 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain KdpD PF02702.17 gi|305663209|ref|YP_003859497.1| - 0.0016 17.9 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain RsgA_GTPase PF03193.16 gi|305663209|ref|YP_003859497.1| - 0.008 16.1 0.1 0.014 15.3 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_13 PF13166.6 gi|305663209|ref|YP_003859497.1| - 0.0081 14.9 0.0 2.6 6.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|305663209|ref|YP_003859497.1| - 0.0091 15.7 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|305663209|ref|YP_003859497.1| - 0.013 16.1 0.4 0.79 10.3 0.4 2.4 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|305663209|ref|YP_003859497.1| - 0.016 15.7 0.0 0.032 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|305663209|ref|YP_003859497.1| - 0.024 14.3 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|305663209|ref|YP_003859497.1| - 0.057 13.1 0.0 0.6 9.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|305663209|ref|YP_003859497.1| - 0.085 12.4 0.0 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|305663209|ref|YP_003859497.1| - 0.12 12.8 0.3 3.5 8.0 0.3 2.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|305663209|ref|YP_003859497.1| - 0.18 11.1 0.0 0.3 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.22 gi|305663209|ref|YP_003859497.1| - 0.19 11.3 0.0 0.33 10.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Dynamin_N PF00350.23 gi|305663209|ref|YP_003859497.1| - 0.21 11.6 0.8 0.58 10.2 0.2 1.9 3 0 0 3 3 2 0 Dynamin family AAA_24 PF13479.6 gi|305663209|ref|YP_003859497.1| - 0.23 11.2 0.0 0.95 9.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain HTH_34 PF13601.6 gi|305663211|ref|YP_003859499.1| - 2e-13 50.3 0.0 2.7e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|305663211|ref|YP_003859499.1| - 2.6e-08 33.6 0.1 6.4e-08 32.3 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|305663211|ref|YP_003859499.1| - 2e-06 27.3 0.1 5.9e-06 25.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|305663211|ref|YP_003859499.1| - 2.4e-06 27.5 0.0 3.8e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|305663211|ref|YP_003859499.1| - 0.0018 18.7 0.0 0.003 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|305663211|ref|YP_003859499.1| - 0.0048 16.7 0.2 0.0063 16.3 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|305663211|ref|YP_003859499.1| - 0.005 16.7 0.0 0.0073 16.2 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|305663211|ref|YP_003859499.1| - 0.006 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|305663211|ref|YP_003859499.1| - 0.007 16.3 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|305663211|ref|YP_003859499.1| - 0.076 13.0 0.2 0.62 10.1 0.0 2.4 2 1 1 3 3 3 0 HTH domain TrmB PF01978.19 gi|305663211|ref|YP_003859499.1| - 0.098 12.6 0.0 0.18 11.7 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|305663211|ref|YP_003859499.1| - 0.11 12.9 0.0 0.48 10.8 0.0 1.9 1 1 1 2 2 2 0 Transcriptional regulator B-block_TFIIIC PF04182.12 gi|305663211|ref|YP_003859499.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC AAA_21 PF13304.6 gi|305663212|ref|YP_003859500.1| - 4.8e-25 89.0 0.1 2.8e-13 50.4 0.0 2.4 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|305663212|ref|YP_003859500.1| - 2.6e-20 73.4 0.1 1.6e-14 54.4 0.0 2.3 2 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|305663212|ref|YP_003859500.1| - 9.7e-12 45.8 0.0 1.3e-11 45.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|305663212|ref|YP_003859500.1| - 1.4e-11 44.3 0.2 2.2e-10 40.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|305663212|ref|YP_003859500.1| - 5.6e-07 29.1 0.5 0.00083 18.7 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_22 PF13401.6 gi|305663212|ref|YP_003859500.1| - 0.001 19.3 0.1 0.019 15.3 0.1 2.4 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|305663212|ref|YP_003859500.1| - 0.003 18.1 0.0 0.59 10.6 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_29 PF13555.6 gi|305663212|ref|YP_003859500.1| - 0.025 14.3 0.0 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|305663212|ref|YP_003859500.1| - 0.08 12.5 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain HEPN-like_int PF18867.1 gi|305663212|ref|YP_003859500.1| - 0.083 12.8 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 HEPN-like integron domain AAA PF00004.29 gi|305663212|ref|YP_003859500.1| - 0.15 12.5 0.0 2.7 8.4 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|305663212|ref|YP_003859500.1| - 0.26 10.0 0.2 1.8 7.2 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF553 PF04473.12 gi|305663214|ref|YP_003859502.1| - 3.3e-10 39.7 0.0 1.5e-08 34.4 0.0 2.2 2 0 0 2 2 2 2 Transglutaminase-like domain ASL_C PF08328.11 gi|305663214|ref|YP_003859502.1| - 0.02 15.0 0.0 0.036 14.2 0.0 1.3 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal Asp_protease_2 PF13650.6 gi|305663215|ref|YP_003859503.1| - 1.1e-05 26.0 0.0 1.9e-05 25.2 0.0 1.4 1 1 1 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|305663215|ref|YP_003859503.1| - 0.0038 17.8 0.0 0.0058 17.2 0.0 1.4 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease DUF104 PF01954.16 gi|305663216|ref|YP_003859504.1| - 2.8e-22 78.9 3.3 3.1e-22 78.8 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 CSD2 PF17876.1 gi|305663216|ref|YP_003859504.1| - 0.09 13.0 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Cold shock domain DUF104 PF01954.16 gi|305663217|ref|YP_003859505.1| - 4.7e-21 75.0 4.7 5.4e-21 74.8 4.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|305663218|ref|YP_003859506.1| - 0.00019 21.9 0.2 0.00021 21.8 0.2 1.0 1 0 0 1 1 1 1 PIN domain Pyr_excise PF03013.14 gi|305663219|ref|YP_003859507.1| - 0.0011 19.0 0.6 0.0022 18.0 0.5 1.6 1 1 0 1 1 1 1 Pyrimidine dimer DNA glycosylase Asp_protease_2 PF13650.6 gi|305663221|ref|YP_003859509.1| - 0.0041 17.7 0.0 0.0041 17.7 0.0 1.1 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|305663221|ref|YP_003859509.1| - 0.027 15.0 0.0 0.027 15.0 0.0 1.2 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease Myosin_N PF02736.19 gi|305663221|ref|YP_003859509.1| - 0.04 13.8 0.1 0.049 13.5 0.1 1.2 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain RVP PF00077.20 gi|305663221|ref|YP_003859509.1| - 0.071 13.4 0.0 0.076 13.3 0.0 1.1 1 0 0 1 1 1 0 Retroviral aspartyl protease CEP63 PF17045.5 gi|305663222|ref|YP_003859510.1| - 0.057 13.3 0.8 0.1 12.5 0.8 1.3 1 0 0 1 1 1 0 Centrosomal protein of 63 kDa zf-C4H2 PF10146.9 gi|305663222|ref|YP_003859510.1| - 6.2 7.1 5.2 1.5 9.1 1.5 1.7 2 0 0 2 2 2 0 Zinc finger-containing protein NTP_transf_2 PF01909.23 gi|305663223|ref|YP_003859511.1| - 0.037 14.3 0.0 0.042 14.1 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyltransferase domain NosD PF05048.13 gi|305663226|ref|YP_003859514.1| - 3.3e-44 151.0 72.3 2.6e-30 105.5 40.6 3.6 3 1 1 4 4 4 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|305663226|ref|YP_003859514.1| - 1.1e-37 129.4 76.9 1.6e-22 80.0 31.2 3.7 3 2 2 5 5 5 2 Right handed beta helix region Vpu PF00558.19 gi|305663226|ref|YP_003859514.1| - 7.4 6.4 7.9 0.24 11.2 0.8 2.0 2 0 0 2 2 2 0 Vpu protein Pkinase PF00069.25 gi|305663227|ref|YP_003859515.1| - 3.3e-28 98.8 0.0 7.9e-28 97.5 0.0 1.6 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|305663227|ref|YP_003859515.1| - 4.4e-20 72.1 0.0 6.6e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.6 gi|305663227|ref|YP_003859515.1| - 9e-06 25.2 0.0 1.5e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Kinase-like Kdo PF06293.14 gi|305663227|ref|YP_003859515.1| - 0.0012 18.2 0.0 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family PPR PF01535.20 gi|305663227|ref|YP_003859515.1| - 0.033 14.4 2.6 4.1 7.9 0.0 4.2 3 0 0 3 3 3 0 PPR repeat FH2 PF02181.23 gi|305663227|ref|YP_003859515.1| - 0.13 11.3 0.1 0.2 10.7 0.1 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain FHA PF00498.26 gi|305663228|ref|YP_003859516.1| - 3.5e-07 30.5 0.0 6.7e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 FHA domain Pkinase PF00069.25 gi|305663229|ref|YP_003859517.1| - 5.5e-14 52.2 0.0 3.3e-13 49.6 0.0 2.3 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|305663229|ref|YP_003859517.1| - 2.3e-07 30.4 0.0 8.3e-07 28.6 0.0 2.0 1 1 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|305663229|ref|YP_003859517.1| - 1.5e-05 24.5 0.1 5e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family MCPsignal PF00015.21 gi|305663229|ref|YP_003859517.1| - 1.2 8.9 4.2 48 3.7 0.0 3.8 4 0 0 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain NPV_P10 PF05531.12 gi|305663229|ref|YP_003859517.1| - 1.7 9.2 23.5 15 6.2 0.2 7.8 8 1 0 8 8 8 0 Nucleopolyhedrovirus P10 protein Syntaxin_2 PF14523.6 gi|305663229|ref|YP_003859517.1| - 4.6 7.7 11.5 2.1 8.8 0.3 5.3 5 1 1 6 6 6 0 Syntaxin-like protein HSP20 PF00011.21 gi|305663230|ref|YP_003859518.1| - 0.32 11.2 2.8 0.52 10.5 0.9 2.4 2 0 0 2 2 2 0 Hsp20/alpha crystallin family Apolipoprotein PF01442.18 gi|305663231|ref|YP_003859519.1| - 1.3e-06 28.4 8.1 8.5e-05 22.5 7.7 2.1 1 1 1 2 2 2 1 Apolipoprotein A1/A4/E domain HSBP1 PF06825.12 gi|305663231|ref|YP_003859519.1| - 5.9e-05 22.8 0.2 0.01 15.7 0.0 3.3 3 0 0 3 3 3 1 Heat shock factor binding protein 1 Baculo_PEP_C PF04513.12 gi|305663231|ref|YP_003859519.1| - 0.00022 21.3 8.2 0.01 15.9 8.1 2.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus CLZ PF16526.5 gi|305663231|ref|YP_003859519.1| - 0.00061 20.1 9.2 0.13 12.7 0.0 3.4 2 1 1 3 3 3 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1664 PF07889.12 gi|305663231|ref|YP_003859519.1| - 0.0033 17.4 13.1 0.014 15.4 1.5 3.4 2 1 2 4 4 3 2 Protein of unknown function (DUF1664) LMBR1 PF04791.16 gi|305663231|ref|YP_003859519.1| - 0.0033 16.4 1.1 0.0033 16.4 1.1 1.1 1 0 0 1 1 1 1 LMBR1-like membrane protein Tup_N PF08581.10 gi|305663231|ref|YP_003859519.1| - 0.0068 16.7 1.7 0.0068 16.7 1.7 2.5 1 1 1 2 2 2 1 Tup N-terminal Exonuc_VII_L PF02601.15 gi|305663231|ref|YP_003859519.1| - 0.012 15.2 3.1 0.017 14.7 3.1 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit SF-assemblin PF06705.11 gi|305663231|ref|YP_003859519.1| - 0.013 14.9 12.5 0.032 13.6 12.5 1.5 1 1 0 1 1 1 0 SF-assemblin/beta giardin DLP_helical PF18709.1 gi|305663231|ref|YP_003859519.1| - 0.016 14.5 4.5 0.023 13.9 4.5 1.2 1 0 0 1 1 1 0 Dynamin-like helical domain Prominin PF05478.11 gi|305663231|ref|YP_003859519.1| - 0.017 13.1 2.9 0.019 13.0 2.9 1.1 1 0 0 1 1 1 0 Prominin ApoO PF09769.9 gi|305663231|ref|YP_003859519.1| - 0.024 14.6 3.6 2.1 8.3 1.0 3.0 1 1 1 2 2 2 0 Apolipoprotein O Fzo_mitofusin PF04799.13 gi|305663231|ref|YP_003859519.1| - 0.026 14.1 7.3 0.9 9.1 0.5 2.8 1 1 1 2 2 2 0 fzo-like conserved region ABC_tran_CTD PF16326.5 gi|305663231|ref|YP_003859519.1| - 0.027 14.7 5.0 0.093 13.0 0.2 2.7 2 1 0 2 2 2 0 ABC transporter C-terminal domain Med9 PF07544.13 gi|305663231|ref|YP_003859519.1| - 0.03 14.4 8.2 0.039 14.0 1.1 2.8 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Phasin PF05597.11 gi|305663231|ref|YP_003859519.1| - 0.053 13.5 6.8 2.4 8.2 0.8 2.6 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Lectin_N PF03954.14 gi|305663231|ref|YP_003859519.1| - 0.054 13.2 1.5 0.27 11.0 0.1 2.1 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain DUF3584 PF12128.8 gi|305663231|ref|YP_003859519.1| - 0.055 11.0 8.3 0.11 10.0 8.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) DUF16 PF01519.16 gi|305663231|ref|YP_003859519.1| - 0.1 13.1 7.2 0.96 10.0 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF16 Spc7 PF08317.11 gi|305663231|ref|YP_003859519.1| - 0.16 10.9 7.3 0.022 13.6 1.8 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein SpoOE-like PF09388.10 gi|305663231|ref|YP_003859519.1| - 0.21 11.5 13.9 1 9.3 0.7 3.7 2 1 1 3 3 3 0 Spo0E like sporulation regulatory protein NPV_P10 PF05531.12 gi|305663231|ref|YP_003859519.1| - 0.21 12.0 3.2 0.46 11.0 0.4 2.7 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.11 gi|305663231|ref|YP_003859519.1| - 0.22 12.0 12.5 8.7 6.8 0.2 3.9 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF4094 PF13334.6 gi|305663231|ref|YP_003859519.1| - 0.26 11.7 5.6 2.4 8.6 1.7 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) FPP PF05911.11 gi|305663231|ref|YP_003859519.1| - 0.28 9.3 11.1 0.43 8.7 5.4 2.1 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil TPR_MLP1_2 PF07926.12 gi|305663231|ref|YP_003859519.1| - 0.29 11.2 9.0 0.45 10.6 1.6 2.5 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF2205 PF10224.9 gi|305663231|ref|YP_003859519.1| - 0.29 11.2 9.2 1.5 8.8 3.1 4.1 2 1 2 4 4 4 0 Short coiled-coil protein DUF3763 PF12592.8 gi|305663231|ref|YP_003859519.1| - 0.47 10.5 2.9 0.63 10.1 0.0 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF3763) CENP-Q PF13094.6 gi|305663231|ref|YP_003859519.1| - 0.51 10.5 5.6 0.83 9.8 5.6 1.3 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit GrpE PF01025.19 gi|305663231|ref|YP_003859519.1| - 0.67 9.6 5.7 2.1 8.0 5.7 1.8 1 1 0 1 1 1 0 GrpE Prefoldin_2 PF01920.20 gi|305663231|ref|YP_003859519.1| - 0.77 9.7 10.5 0.3 11.0 1.1 3.1 1 1 2 3 3 3 0 Prefoldin subunit COG2 PF06148.11 gi|305663231|ref|YP_003859519.1| - 0.91 9.6 8.9 10 6.2 0.1 3.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4709 PF15821.5 gi|305663231|ref|YP_003859519.1| - 1 9.7 5.9 3 8.2 5.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4709) Atg14 PF10186.9 gi|305663231|ref|YP_003859519.1| - 1.1 8.3 7.4 1.8 7.6 7.4 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Uds1 PF15456.6 gi|305663231|ref|YP_003859519.1| - 1.5 9.0 8.1 5.4 7.2 6.2 2.6 1 1 1 2 2 2 0 Up-regulated During Septation Syntaxin-6_N PF09177.11 gi|305663231|ref|YP_003859519.1| - 1.8 9.2 9.2 1.1e+02 3.5 9.2 2.8 1 1 0 1 1 1 0 Syntaxin 6, N-terminal CHASE6_C PF17150.4 gi|305663231|ref|YP_003859519.1| - 3.7 8.3 5.6 56 4.5 3.6 3.2 2 1 0 2 2 2 0 C-terminal domain of two-partite extracellular sensor domain Tweety PF04906.13 gi|305663231|ref|YP_003859519.1| - 3.8 6.1 5.5 9 4.8 0.4 2.1 1 1 1 2 2 2 0 Tweety Fib_alpha PF08702.10 gi|305663231|ref|YP_003859519.1| - 4 7.6 11.4 16 5.7 7.1 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF1640 PF07798.11 gi|305663231|ref|YP_003859519.1| - 4 7.4 11.9 29 4.6 11.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) SlyX PF04102.12 gi|305663231|ref|YP_003859519.1| - 4.3 8.0 8.4 2.2 9.0 0.4 3.4 1 1 1 3 3 3 0 SlyX DASH_Dad4 PF08650.10 gi|305663231|ref|YP_003859519.1| - 4.7 7.3 10.8 6.8 6.8 0.7 3.4 2 1 2 4 4 4 0 DASH complex subunit Dad4 HalX PF08663.10 gi|305663231|ref|YP_003859519.1| - 5.2 7.5 14.3 39 4.6 2.4 4.6 2 1 2 4 4 4 0 HalX domain HSCB_C PF07743.13 gi|305663231|ref|YP_003859519.1| - 6.4 7.3 9.4 14 6.2 3.3 2.8 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain SinI PF08671.10 gi|305663232|ref|YP_003859520.1| - 0.0017 18.1 0.2 0.0042 16.8 0.2 1.7 1 0 0 1 1 1 1 Anti-repressor SinI Phage_TAC_8 PF10666.9 gi|305663232|ref|YP_003859520.1| - 0.026 14.8 1.3 0.4 10.9 0.3 2.4 2 0 0 2 2 2 0 Phage tail assembly chaperone protein Gp14 ()A118 Cofilin_ADF PF00241.20 gi|305663232|ref|YP_003859520.1| - 0.052 13.4 0.6 0.19 11.5 0.2 2.0 2 0 0 2 2 2 0 Cofilin/tropomyosin-type actin-binding protein SKG6 PF08693.10 gi|305663232|ref|YP_003859520.1| - 0.055 12.9 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Transmembrane alpha-helix domain LapA_dom PF06305.11 gi|305663232|ref|YP_003859520.1| - 0.14 11.9 0.1 0.43 10.4 0.1 1.8 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Jnk-SapK_ap_N PF09744.9 gi|305663232|ref|YP_003859520.1| - 0.22 11.7 7.3 0.38 11.0 0.5 2.8 3 0 0 3 3 3 0 JNK_SAPK-associated protein-1 DUF641 PF04859.12 gi|305663233|ref|YP_003859521.1| - 0.00063 20.1 3.2 0.00063 20.1 3.2 3.4 1 1 2 3 3 3 1 Plant protein of unknown function (DUF641) DUF948 PF06103.11 gi|305663233|ref|YP_003859521.1| - 0.0013 19.0 1.7 0.0082 16.4 0.1 2.8 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF948) AIP3 PF03915.13 gi|305663233|ref|YP_003859521.1| - 0.0031 16.7 13.1 0.005 16.0 13.1 1.2 1 0 0 1 1 1 1 Actin interacting protein 3 CorA PF01544.18 gi|305663233|ref|YP_003859521.1| - 0.0057 16.0 22.5 0.011 15.0 7.6 2.5 3 0 0 3 3 2 2 CorA-like Mg2+ transporter protein DUF3584 PF12128.8 gi|305663233|ref|YP_003859521.1| - 0.0066 14.1 14.4 0.01 13.4 14.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF4407 PF14362.6 gi|305663233|ref|YP_003859521.1| - 0.029 13.7 9.5 0.92 8.8 5.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Spc7 PF08317.11 gi|305663233|ref|YP_003859521.1| - 0.03 13.2 34.5 0.0075 15.2 26.6 2.9 2 1 1 3 3 3 0 Spc7 kinetochore protein DUF4111 PF13427.6 gi|305663233|ref|YP_003859521.1| - 0.085 13.0 1.5 0.21 11.7 1.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4111) TPR_MLP1_2 PF07926.12 gi|305663233|ref|YP_003859521.1| - 0.087 12.9 27.7 0.1 12.7 23.0 2.7 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Cor1 PF04803.12 gi|305663233|ref|YP_003859521.1| - 0.11 12.7 22.6 0.12 12.6 12.1 2.8 2 1 1 3 3 2 0 Cor1/Xlr/Xmr conserved region APG6_N PF17675.1 gi|305663233|ref|YP_003859521.1| - 0.19 12.3 37.0 0.057 14.0 25.0 2.6 1 1 2 3 3 3 0 Apg6 coiled-coil region AphA_like PF14557.6 gi|305663233|ref|YP_003859521.1| - 0.19 11.4 3.6 0.54 10.0 3.6 1.8 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator Fib_alpha PF08702.10 gi|305663233|ref|YP_003859521.1| - 0.29 11.3 14.8 1.8 8.8 9.7 2.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Tropomyosin_1 PF12718.7 gi|305663233|ref|YP_003859521.1| - 0.34 11.0 35.7 0.053 13.7 23.6 2.4 1 1 2 3 3 3 0 Tropomyosin like HMMR_N PF15905.5 gi|305663233|ref|YP_003859521.1| - 0.4 10.1 29.8 0.18 11.2 13.8 2.2 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DUF1664 PF07889.12 gi|305663233|ref|YP_003859521.1| - 0.48 10.5 12.9 4 7.5 3.1 3.3 2 1 2 4 4 3 0 Protein of unknown function (DUF1664) Filament PF00038.21 gi|305663233|ref|YP_003859521.1| - 0.55 9.8 31.5 0.15 11.6 26.2 2.3 2 1 1 3 3 3 0 Intermediate filament protein TMPIT PF07851.13 gi|305663233|ref|YP_003859521.1| - 0.55 9.4 13.7 3 7.0 8.5 2.9 2 1 1 3 3 3 0 TMPIT-like protein FUSC PF04632.12 gi|305663233|ref|YP_003859521.1| - 0.7 8.4 1.9 0.98 7.9 1.9 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Bacillus_HBL PF05791.11 gi|305663233|ref|YP_003859521.1| - 0.77 9.6 7.7 4.2 7.2 2.4 2.5 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Sec34 PF04136.15 gi|305663233|ref|YP_003859521.1| - 0.81 9.6 14.5 2.2 8.2 3.5 3.9 2 1 2 4 4 4 0 Sec34-like family UPF0242 PF06785.11 gi|305663233|ref|YP_003859521.1| - 1.1 9.3 31.4 3.7 7.6 13.8 2.4 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF16 PF01519.16 gi|305663233|ref|YP_003859521.1| - 1.2 9.7 19.0 2.7 8.5 2.5 3.7 2 1 2 4 4 3 0 Protein of unknown function DUF16 CALCOCO1 PF07888.11 gi|305663233|ref|YP_003859521.1| - 1.3 7.8 30.0 0.17 10.7 22.2 2.2 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like MbeD_MobD PF04899.12 gi|305663233|ref|YP_003859521.1| - 1.5 8.9 9.9 4.3 7.5 3.5 2.9 1 1 1 2 2 2 0 MbeD/MobD like WXG100 PF06013.12 gi|305663233|ref|YP_003859521.1| - 1.7 8.9 4.2 24 5.3 0.1 4.2 5 1 1 6 6 4 0 Proteins of 100 residues with WXG Syntaxin_2 PF14523.6 gi|305663233|ref|YP_003859521.1| - 1.9 8.9 9.6 0.85 10.0 2.7 3.1 1 1 2 3 3 3 0 Syntaxin-like protein Allexi_40kDa PF05549.11 gi|305663233|ref|YP_003859521.1| - 1.9 7.9 8.5 0.96 8.9 2.8 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein Mod_r PF07200.13 gi|305663233|ref|YP_003859521.1| - 2.1 8.4 26.3 14 5.8 12.6 2.7 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein BLOC1_2 PF10046.9 gi|305663233|ref|YP_003859521.1| - 2.1 8.7 21.1 0.34 11.2 9.9 3.9 2 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SOAR PF16533.5 gi|305663233|ref|YP_003859521.1| - 2.1 8.4 15.8 0.039 13.9 6.0 2.6 1 1 1 2 2 2 0 STIM1 Orai1-activating region SHE3 PF17078.5 gi|305663233|ref|YP_003859521.1| - 4.2 7.0 24.3 4.4 6.9 20.4 2.6 2 1 1 3 3 3 0 SWI5-dependent HO expression protein 3 Ku_C PF03730.14 gi|305663233|ref|YP_003859521.1| - 5.7 7.7 7.6 6.5 7.5 5.9 2.2 1 1 0 1 1 1 0 Ku70/Ku80 C-terminal arm TMF_TATA_bd PF12325.8 gi|305663233|ref|YP_003859521.1| - 6.3 7.1 33.5 2.7 8.2 14.0 2.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding IFT57 PF10498.9 gi|305663233|ref|YP_003859521.1| - 7.9 5.3 22.6 2 7.3 10.6 2.6 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 DHR10 PF18595.1 gi|305663233|ref|YP_003859521.1| - 8.8 6.4 31.3 5.4 7.1 23.9 2.6 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain CENP-H PF05837.12 gi|305663233|ref|YP_003859521.1| - 9.7 6.6 23.9 2 8.9 11.5 2.4 1 1 1 2 2 2 0 Centromere protein H (CENP-H) MMR_HSR1 PF01926.23 gi|305663234|ref|YP_003859522.1| - 0.0002 21.4 0.3 0.0027 17.8 0.2 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase DUF87 PF01935.17 gi|305663234|ref|YP_003859522.1| - 0.039 14.1 0.1 0.19 11.8 0.0 2.2 2 1 1 3 3 3 0 Helicase HerA, central domain ABC_tran PF00005.27 gi|305663234|ref|YP_003859522.1| - 0.18 12.3 0.0 0.33 11.5 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Helicase_RecD PF05127.14 gi|305663234|ref|YP_003859522.1| - 0.19 11.6 0.0 0.75 9.6 0.0 1.9 2 0 0 2 2 2 0 Helicase DUF4752 PF15944.5 gi|305663235|ref|YP_003859523.1| - 0.099 12.7 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4752) ANAPC4_WD40 PF12894.7 gi|305663236|ref|YP_003859524.1| - 2e-18 66.5 0.3 1.8e-05 24.9 0.0 5.0 3 3 2 5 5 5 3 Anaphase-promoting complex subunit 4 WD40 domain PQQ_2 PF13360.6 gi|305663236|ref|YP_003859524.1| - 1.5e-10 41.0 17.6 7.2e-09 35.6 5.1 4.0 3 1 1 4 4 4 1 PQQ-like domain WD40 PF00400.32 gi|305663236|ref|YP_003859524.1| - 1e-09 38.8 7.4 0.13 13.2 0.2 6.1 5 0 0 5 5 5 3 WD domain, G-beta repeat PD40 PF07676.12 gi|305663236|ref|YP_003859524.1| - 2.7e-08 33.5 13.8 0.23 11.5 0.1 6.5 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat PQQ PF01011.21 gi|305663236|ref|YP_003859524.1| - 3.7e-07 29.8 6.2 0.44 10.6 0.0 5.4 6 0 0 6 6 6 4 PQQ enzyme repeat EphA2_TM PF14575.6 gi|305663236|ref|YP_003859524.1| - 0.15 12.9 0.4 2.2 9.2 0.3 2.6 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain RIFIN PF02009.16 gi|305663236|ref|YP_003859524.1| - 0.73 9.7 16.7 1.2 9.0 16.7 1.2 1 0 0 1 1 1 0 Rifin DUF3333 PF11812.8 gi|305663238|ref|YP_003859526.1| - 0.076 13.2 1.6 0.087 13.0 1.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) Sec61_beta PF03911.16 gi|305663238|ref|YP_003859526.1| - 1.8 8.7 7.2 2.5 8.2 7.2 1.3 1 0 0 1 1 1 0 Sec61beta family BtpA PF03437.15 gi|305663241|ref|YP_003859529.1| - 1.2e-72 244.5 0.0 1.7e-72 243.9 0.0 1.2 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.20 gi|305663241|ref|YP_003859529.1| - 0.0023 16.8 0.0 0.004 16.1 0.0 1.4 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Bac_luciferase PF00296.20 gi|305663241|ref|YP_003859529.1| - 0.022 14.2 0.0 0.059 12.8 0.0 1.6 2 0 0 2 2 2 0 Luciferase-like monooxygenase TMP-TENI PF02581.17 gi|305663241|ref|YP_003859529.1| - 0.11 11.8 0.1 0.27 10.6 0.1 1.7 1 1 0 1 1 1 0 Thiamine monophosphate synthase PEP_mutase PF13714.6 gi|305663241|ref|YP_003859529.1| - 0.12 11.9 0.0 4.3 6.7 0.0 2.2 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase PDGF_N PF04692.13 gi|305663242|ref|YP_003859530.1| - 0.01 16.6 0.2 0.012 16.4 0.2 1.2 1 0 0 1 1 1 0 Platelet-derived growth factor, N terminal region TolA_bind_tri PF16331.5 gi|305663244|ref|YP_003859532.1| - 0.0024 17.9 0.8 0.0035 17.4 0.8 1.2 1 0 0 1 1 1 1 TolA binding protein trimerisation Trimer_CC PF08954.11 gi|305663244|ref|YP_003859532.1| - 0.014 15.0 0.5 0.021 14.4 0.4 1.4 1 1 0 1 1 1 0 Trimerisation motif Prefoldin_2 PF01920.20 gi|305663244|ref|YP_003859532.1| - 0.021 14.8 0.2 0.028 14.4 0.2 1.1 1 0 0 1 1 1 0 Prefoldin subunit DUF4795 PF16043.5 gi|305663244|ref|YP_003859532.1| - 0.03 13.9 0.1 0.036 13.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) CEP209_CC5 PF16574.5 gi|305663244|ref|YP_003859532.1| - 0.05 13.8 0.4 0.059 13.5 0.4 1.1 1 0 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 RasGAP_C PF03836.15 gi|305663244|ref|YP_003859532.1| - 0.052 13.7 0.1 0.055 13.6 0.1 1.1 1 0 0 1 1 1 0 RasGAP C-terminus PDR_CDR PF06422.12 gi|305663244|ref|YP_003859532.1| - 0.059 13.3 0.2 0.078 12.9 0.2 1.2 1 0 0 1 1 1 0 CDR ABC transporter EMP24_GP25L PF01105.24 gi|305663244|ref|YP_003859532.1| - 0.062 13.2 1.3 0.068 13.1 1.3 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Wtap PF17098.5 gi|305663244|ref|YP_003859532.1| - 0.073 13.0 0.2 0.085 12.8 0.2 1.1 1 0 0 1 1 1 0 WTAP/Mum2p family Baculo_PEP_C PF04513.12 gi|305663244|ref|YP_003859532.1| - 0.1 12.6 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2730 PF10805.8 gi|305663244|ref|YP_003859532.1| - 0.91 9.6 4.6 0.66 10.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) XhlA PF10779.9 gi|305663244|ref|YP_003859532.1| - 1.2 9.4 8.3 4.4 7.6 6.8 2.0 1 1 1 2 2 2 0 Haemolysin XhlA PaREP1 PF05942.11 gi|305663245|ref|YP_003859533.1| - 3.7e-25 88.1 2.0 5.6e-25 87.5 2.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|305663245|ref|YP_003859533.1| - 0.0035 17.5 1.3 0.012 15.7 1.3 1.8 1 1 0 1 1 1 1 HEPN domain CopG_antitoxin PF12441.8 gi|305663245|ref|YP_003859533.1| - 0.038 14.5 0.0 0.081 13.5 0.0 1.6 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system DUF5618 PF18498.1 gi|305663245|ref|YP_003859533.1| - 0.07 13.3 0.1 0.14 12.4 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5618) RHH_1 PF01402.21 gi|305663245|ref|YP_003859533.1| - 0.34 10.9 0.1 0.34 10.9 0.1 2.5 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DUF973 PF06157.11 gi|305663246|ref|YP_003859534.1| - 2.9e-16 59.4 40.1 3.4e-16 59.2 40.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) Peptidase_S49 PF01343.18 gi|305663247|ref|YP_003859535.1| - 7.4e-40 136.4 0.0 9.9e-40 136.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.16 gi|305663247|ref|YP_003859535.1| - 2e-07 30.3 0.4 2.8e-07 29.9 0.4 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|305663247|ref|YP_003859535.1| - 3.1e-07 30.4 3.1 0.0015 18.4 0.5 2.3 2 0 0 2 2 2 2 Clp protease YPEB PF14620.6 gi|305663247|ref|YP_003859535.1| - 0.16 11.3 0.0 0.22 10.8 0.0 1.1 1 0 0 1 1 1 0 YpeB sporulation PAE PF03283.13 gi|305663247|ref|YP_003859535.1| - 0.28 10.3 0.0 4.3 6.3 0.0 2.0 2 0 0 2 2 2 0 Pectinacetylesterase ATPase_2 PF01637.18 gi|305663248|ref|YP_003859536.1| - 6.2e-51 173.5 1.3 6.8e-51 173.4 0.2 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|305663248|ref|YP_003859536.1| - 3.2e-06 27.6 0.0 7.6e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|305663248|ref|YP_003859536.1| - 4.8e-06 25.9 0.2 4.7e-05 22.7 0.0 2.2 2 1 0 2 2 2 1 NB-ARC domain AAA PF00004.29 gi|305663248|ref|YP_003859536.1| - 0.00027 21.4 0.0 0.00063 20.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|305663248|ref|YP_003859536.1| - 0.00039 20.4 0.0 0.00096 19.1 0.0 1.6 2 0 0 2 2 2 1 Rad17 P-loop domain PDH PF02153.17 gi|305663248|ref|YP_003859536.1| - 0.00064 18.8 0.0 0.0089 15.1 0.0 2.2 2 0 0 2 2 2 1 Prephenate dehydrogenase KAP_NTPase PF07693.14 gi|305663248|ref|YP_003859536.1| - 0.00076 18.8 0.0 0.00081 18.7 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain AAA_14 PF13173.6 gi|305663248|ref|YP_003859536.1| - 0.0011 19.0 0.2 0.0035 17.4 0.0 2.1 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|305663248|ref|YP_003859536.1| - 0.0022 18.3 0.0 0.0092 16.4 0.0 2.0 3 0 0 3 3 2 1 RNA helicase AAA_24 PF13479.6 gi|305663248|ref|YP_003859536.1| - 0.0033 17.2 0.0 0.0058 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|305663248|ref|YP_003859536.1| - 0.0043 17.3 0.0 0.0089 16.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain G-alpha PF00503.20 gi|305663248|ref|YP_003859536.1| - 0.0055 15.9 0.0 0.012 14.8 0.0 1.3 1 1 0 1 1 1 1 G-protein alpha subunit AAA_30 PF13604.6 gi|305663248|ref|YP_003859536.1| - 0.0064 16.2 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|305663248|ref|YP_003859536.1| - 0.018 14.9 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 NACHT domain PhoH PF02562.16 gi|305663248|ref|YP_003859536.1| - 0.025 14.1 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DAP3 PF10236.9 gi|305663248|ref|YP_003859536.1| - 0.03 13.5 0.0 0.06 12.5 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 cobW PF02492.19 gi|305663248|ref|YP_003859536.1| - 0.032 13.8 0.0 0.5 9.9 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 gi|305663248|ref|YP_003859536.1| - 0.037 14.5 0.0 0.054 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|305663248|ref|YP_003859536.1| - 0.038 14.5 0.1 0.26 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|305663248|ref|YP_003859536.1| - 0.05 13.6 0.0 0.41 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|305663248|ref|YP_003859536.1| - 0.069 13.6 0.6 1.4 9.3 0.0 2.8 3 0 0 3 3 3 0 AAA domain Ca_chan_IQ PF08763.11 gi|305663248|ref|YP_003859536.1| - 0.088 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Voltage gated calcium channel IQ domain ATP_bind_1 PF03029.17 gi|305663248|ref|YP_003859536.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SieB PF14163.6 gi|305663248|ref|YP_003859536.1| - 0.12 11.9 0.4 0.29 10.6 0.1 1.8 2 1 0 2 2 2 0 Super-infection exclusion protein B AAA_33 PF13671.6 gi|305663248|ref|YP_003859536.1| - 0.18 11.9 0.0 0.55 10.4 0.0 2.0 2 1 0 2 2 1 0 AAA domain Rho_GDI PF02115.17 gi|305663249|ref|YP_003859537.1| - 0.21 11.3 0.0 0.23 11.2 0.0 1.1 1 0 0 1 1 1 0 RHO protein GDP dissociation inhibitor SNase PF00565.17 gi|305663250|ref|YP_003859538.1| - 4.6e-07 30.3 0.0 6.4e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Radical_SAM PF04055.21 gi|305663251|ref|YP_003859539.1| - 1.8e-13 51.2 0.6 5.6e-13 49.6 0.6 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|305663251|ref|YP_003859539.1| - 4.4e-06 27.0 0.0 8.6e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|305663251|ref|YP_003859539.1| - 0.016 15.4 0.7 0.038 14.1 0.7 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain SPASM PF13186.6 gi|305663251|ref|YP_003859539.1| - 0.048 14.2 1.0 0.11 13.1 1.0 1.7 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain TP_methylase PF00590.20 gi|305663252|ref|YP_003859540.1| - 2.2e-27 96.4 0.0 2.5e-27 96.2 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CTP_transf_like PF01467.26 gi|305663252|ref|YP_003859540.1| - 0.028 14.6 0.1 0.049 13.8 0.1 1.4 1 0 0 1 1 1 0 Cytidylyltransferase-like AIRS_C PF02769.22 gi|305663252|ref|YP_003859540.1| - 0.097 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain KH_1 PF00013.29 gi|305663252|ref|YP_003859540.1| - 0.18 11.6 2.6 0.31 10.9 0.6 2.3 2 0 0 2 2 2 0 KH domain GBR2_CC PF18455.1 gi|305663252|ref|YP_003859540.1| - 0.44 10.7 0.1 0.44 10.7 0.1 1.8 2 0 0 2 2 2 0 Gamma-aminobutyric acid type B receptor subunit 2 coiled-coil domain Radical_SAM PF04055.21 gi|305663253|ref|YP_003859541.1| - 8.6e-22 78.3 0.1 1.4e-21 77.6 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|305663253|ref|YP_003859541.1| - 1.5e-08 35.0 0.4 4.8e-08 33.4 0.2 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|305663253|ref|YP_003859541.1| - 1.8e-07 31.5 0.0 3.7e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|305663253|ref|YP_003859541.1| - 1.1e-05 25.5 0.0 2.2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain HEPN PF05168.14 gi|305663253|ref|YP_003859541.1| - 0.01 16.0 0.0 0.024 14.8 0.0 1.6 1 0 0 1 1 1 0 HEPN domain DUF2207 PF09972.9 gi|305663254|ref|YP_003859542.1| - 0.81 8.4 9.1 0.91 8.2 9.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3782 PF12644.7 gi|305663255|ref|YP_003859543.1| - 1.4e-25 89.3 2.9 1.4e-25 89.3 2.9 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|305663255|ref|YP_003859543.1| - 6.1e-20 70.9 1.9 1.2e-19 70.0 1.9 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Phlebovirus_NSM PF07246.11 gi|305663255|ref|YP_003859543.1| - 0.011 15.1 1.1 0.023 14.1 1.1 1.5 1 1 0 1 1 1 0 Phlebovirus nonstructural protein NS-M Snapin_Pallidin PF14712.6 gi|305663255|ref|YP_003859543.1| - 0.018 15.5 0.9 0.17 12.3 0.2 2.4 1 1 1 2 2 2 0 Snapin/Pallidin GAS PF13851.6 gi|305663255|ref|YP_003859543.1| - 0.078 12.3 3.7 0.18 11.1 3.6 1.6 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Syntaxin_2 PF14523.6 gi|305663255|ref|YP_003859543.1| - 0.1 13.0 0.1 0.22 11.9 0.1 1.5 1 0 0 1 1 1 0 Syntaxin-like protein DUF1033 PF06279.11 gi|305663255|ref|YP_003859543.1| - 0.12 12.6 0.1 0.39 10.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1033) XhlA PF10779.9 gi|305663255|ref|YP_003859543.1| - 0.12 12.6 2.4 0.48 10.7 0.3 2.5 2 1 0 2 2 2 0 Haemolysin XhlA YabA PF06156.13 gi|305663255|ref|YP_003859543.1| - 1.2 9.9 3.5 2.9 8.6 1.5 2.6 1 1 1 2 2 2 0 Initiation control protein YabA TMF_TATA_bd PF12325.8 gi|305663255|ref|YP_003859543.1| - 1.2 9.3 5.4 2.4 8.4 4.0 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF4795 PF16043.5 gi|305663255|ref|YP_003859543.1| - 4.3 6.9 5.3 28 4.2 5.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) APG6_N PF17675.1 gi|305663255|ref|YP_003859543.1| - 5.4 7.6 7.3 6.1 7.4 5.9 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region ADIP PF11559.8 gi|305663255|ref|YP_003859543.1| - 7.5 6.6 6.5 2.1 8.4 1.5 2.3 3 0 0 3 3 3 0 Afadin- and alpha -actinin-Binding Vac_Fusion PF02346.16 gi|305663255|ref|YP_003859543.1| - 7.7 6.2 10.5 10 5.8 3.2 3.4 1 1 1 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 ZapD PF07072.11 gi|305663255|ref|YP_003859543.1| - 7.7 6.2 8.5 3 7.6 0.2 2.5 2 1 1 3 3 3 0 Cell division protein Radical_SAM PF04055.21 gi|305663256|ref|YP_003859544.1| - 4.8e-12 46.6 1.3 5e-07 30.2 0.0 3.0 2 1 1 3 3 3 2 Radical SAM superfamily Fer4_12 PF13353.6 gi|305663256|ref|YP_003859544.1| - 3.9e-06 27.2 0.0 0.039 14.2 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|305663256|ref|YP_003859544.1| - 2.3e-05 24.5 0.0 0.25 11.5 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain GFA PF04828.14 gi|305663256|ref|YP_003859544.1| - 0.079 13.3 3.3 0.15 12.4 3.3 1.4 1 0 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme BKACE PF05853.12 gi|305663256|ref|YP_003859544.1| - 0.1 11.9 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 beta-keto acid cleavage enzyme Fer4_2 PF12797.7 gi|305663256|ref|YP_003859544.1| - 8.2 6.7 7.8 0.96 9.7 1.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Nitro_FeMo-Co PF02579.17 gi|305663257|ref|YP_003859545.1| - 1.9e-16 60.2 0.0 2.3e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF2730 PF10805.8 gi|305663258|ref|YP_003859546.1| - 2.2e-05 24.5 2.2 0.25 11.5 0.8 3.0 1 1 2 3 3 3 3 Protein of unknown function (DUF2730) TolA_bind_tri PF16331.5 gi|305663258|ref|YP_003859546.1| - 0.0013 18.8 1.9 2.9 8.0 0.1 4.1 1 1 3 4 4 4 1 TolA binding protein trimerisation Spc7 PF08317.11 gi|305663258|ref|YP_003859546.1| - 0.0019 17.1 0.4 0.0027 16.7 0.4 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF1640 PF07798.11 gi|305663258|ref|YP_003859546.1| - 0.0032 17.6 1.1 0.027 14.5 1.1 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1640) ZapB PF06005.12 gi|305663258|ref|YP_003859546.1| - 0.0035 17.8 0.5 0.25 11.8 0.5 2.5 1 1 0 1 1 1 1 Cell division protein ZapB DUF1192 PF06698.11 gi|305663258|ref|YP_003859546.1| - 0.0049 16.9 5.8 0.76 9.9 0.3 3.3 1 1 2 3 3 3 2 Protein of unknown function (DUF1192) DUF1664 PF07889.12 gi|305663258|ref|YP_003859546.1| - 0.01 15.9 2.6 0.39 10.8 1.0 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Rootletin PF15035.6 gi|305663258|ref|YP_003859546.1| - 0.038 14.0 0.5 2.6 8.0 0.0 2.5 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion LPP PF04728.13 gi|305663258|ref|YP_003859546.1| - 0.048 14.0 0.0 1.2 9.6 0.0 2.8 1 1 2 3 3 3 0 Lipoprotein leucine-zipper MAD PF05557.13 gi|305663258|ref|YP_003859546.1| - 0.051 11.9 3.1 0.085 11.2 3.1 1.5 1 1 0 1 1 1 0 Mitotic checkpoint protein HMMR_C PF15908.5 gi|305663258|ref|YP_003859546.1| - 0.058 13.7 0.5 0.8 10.0 0.4 2.2 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor C-terminal CCDC144C PF14915.6 gi|305663258|ref|YP_003859546.1| - 0.062 12.4 3.2 0.39 9.8 3.2 2.0 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region CENP-F_leu_zip PF10473.9 gi|305663258|ref|YP_003859546.1| - 0.074 13.1 2.7 0.2 11.6 2.1 1.9 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NPV_P10 PF05531.12 gi|305663258|ref|YP_003859546.1| - 0.11 12.9 0.7 0.56 10.7 0.2 2.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF2552 PF10827.8 gi|305663258|ref|YP_003859546.1| - 0.13 12.5 0.0 3.7 7.8 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2552) TSC22 PF01166.18 gi|305663258|ref|YP_003859546.1| - 0.14 12.5 8.7 7.6 6.9 0.8 4.7 4 2 1 5 5 5 0 TSC-22/dip/bun family DUF3349 PF11829.8 gi|305663258|ref|YP_003859546.1| - 0.14 12.9 1.9 3.1 8.6 0.1 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3349) DUF5320 PF17253.2 gi|305663258|ref|YP_003859546.1| - 0.22 12.6 0.3 1.2 10.3 0.3 2.3 1 1 0 1 1 1 0 Family of unknown function (DUF5320) Rx_N PF18052.1 gi|305663258|ref|YP_003859546.1| - 0.38 11.1 6.1 82 3.6 5.6 3.6 1 1 1 2 2 2 0 Rx N-terminal domain Seryl_tRNA_N PF02403.22 gi|305663258|ref|YP_003859546.1| - 0.38 11.0 6.0 0.28 11.4 3.4 2.3 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain TAA-Trp-ring PF15401.6 gi|305663258|ref|YP_003859546.1| - 0.61 10.6 2.4 1.7 9.2 0.5 2.4 1 1 1 2 2 2 0 Tryptophan-ring motif of head of Trimeric autotransporter adhesin Qua1 PF16274.5 gi|305663258|ref|YP_003859546.1| - 0.93 9.4 6.7 4.4 7.2 0.7 3.3 2 1 2 4 4 4 0 Qua1 domain Mst1_SARAH PF11629.8 gi|305663258|ref|YP_003859546.1| - 3.8 7.7 6.4 31 4.7 0.3 3.3 3 0 0 3 3 3 0 C terminal SARAH domain of Mst1 CC2-LZ PF16516.5 gi|305663258|ref|YP_003859546.1| - 4 7.9 6.2 0.17 12.3 0.8 1.6 2 0 0 2 2 1 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DivIC PF04977.15 gi|305663259|ref|YP_003859547.1| - 0.00024 20.8 0.1 0.00032 20.4 0.1 1.2 1 0 0 1 1 1 1 Septum formation initiator Prefoldin_3 PF13758.6 gi|305663259|ref|YP_003859547.1| - 0.00039 20.4 1.6 0.0044 17.0 0.9 2.0 1 1 1 2 2 2 2 Prefoldin subunit DUF2721 PF11026.8 gi|305663259|ref|YP_003859547.1| - 0.0013 18.7 0.1 0.0014 18.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2721) HSBP1 PF06825.12 gi|305663259|ref|YP_003859547.1| - 0.0027 17.5 6.5 0.058 13.3 2.6 2.3 1 1 1 2 2 2 2 Heat shock factor binding protein 1 DUF4988 PF16378.5 gi|305663259|ref|YP_003859547.1| - 0.0045 16.7 0.2 0.0051 16.5 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function FliD_C PF07195.12 gi|305663259|ref|YP_003859547.1| - 0.0071 15.8 0.1 0.0074 15.7 0.1 1.1 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus XhlA PF10779.9 gi|305663259|ref|YP_003859547.1| - 0.0077 16.4 1.5 0.011 15.9 1.5 1.4 1 1 0 1 1 1 1 Haemolysin XhlA Prefoldin PF02996.17 gi|305663259|ref|YP_003859547.1| - 0.027 14.4 0.1 0.033 14.1 0.1 1.2 1 0 0 1 1 1 0 Prefoldin subunit DUF4140 PF13600.6 gi|305663259|ref|YP_003859547.1| - 0.028 14.9 0.0 0.035 14.6 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF496 PF04363.12 gi|305663259|ref|YP_003859547.1| - 0.033 14.2 0.8 0.041 13.9 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF496) BLOC1_2 PF10046.9 gi|305663259|ref|YP_003859547.1| - 0.039 14.2 0.1 0.048 14.0 0.1 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|305663259|ref|YP_003859547.1| - 0.04 14.4 0.2 0.052 14.0 0.2 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF3375 PF11855.8 gi|305663259|ref|YP_003859547.1| - 0.041 12.8 0.7 0.044 12.7 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) DUF3552 PF12072.8 gi|305663259|ref|YP_003859547.1| - 0.041 13.3 0.6 0.046 13.1 0.2 1.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) MerR-DNA-bind PF09278.11 gi|305663259|ref|YP_003859547.1| - 0.045 14.3 0.2 0.079 13.5 0.2 1.5 1 0 0 1 1 1 0 MerR, DNA binding DUF1664 PF07889.12 gi|305663259|ref|YP_003859547.1| - 0.058 13.4 0.1 0.097 12.7 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) MRF_C1 PF13887.6 gi|305663259|ref|YP_003859547.1| - 0.067 12.4 1.1 11 5.3 0.1 3.0 1 1 4 5 5 5 0 Myelin gene regulatory factor -C-terminal domain 1 bZIP_1 PF00170.21 gi|305663259|ref|YP_003859547.1| - 0.072 13.2 0.0 0.088 12.9 0.0 1.1 1 0 0 1 1 1 0 bZIP transcription factor FlaC_arch PF05377.11 gi|305663259|ref|YP_003859547.1| - 0.073 13.5 0.0 0.094 13.1 0.0 1.2 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ABC_tran_CTD PF16326.5 gi|305663259|ref|YP_003859547.1| - 0.099 12.9 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 ABC transporter C-terminal domain Prefoldin_2 PF01920.20 gi|305663259|ref|YP_003859547.1| - 0.13 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Prefoldin subunit DUF16 PF01519.16 gi|305663259|ref|YP_003859547.1| - 0.15 12.6 0.0 0.16 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF16 MscS_porin PF12795.7 gi|305663259|ref|YP_003859547.1| - 0.17 11.4 0.0 0.17 11.4 0.0 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Snf7 PF03357.21 gi|305663259|ref|YP_003859547.1| - 0.17 11.5 0.1 0.2 11.3 0.1 1.1 1 0 0 1 1 1 0 Snf7 Tropomyosin_1 PF12718.7 gi|305663259|ref|YP_003859547.1| - 0.19 11.9 0.0 0.22 11.7 0.0 1.1 1 0 0 1 1 1 0 Tropomyosin like YdjM PF04307.14 gi|305663260|ref|YP_003859548.1| - 3.5e-05 23.2 1.9 5e-05 22.7 1.9 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase MotB_plug PF13677.6 gi|305663260|ref|YP_003859548.1| - 0.013 15.1 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 Membrane MotB of proton-channel complex MotA/MotB DUF4184 PF13803.6 gi|305663260|ref|YP_003859548.1| - 3.8 7.2 6.3 1.3 8.7 3.3 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4184) Aldo_ket_red PF00248.21 gi|305663261|ref|YP_003859549.1| - 8.3e-20 71.2 0.0 9.1e-20 71.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family OrfB_Zn_ribbon PF07282.11 gi|305663262|ref|YP_003859550.1| - 1.1e-18 66.9 0.3 3.8e-18 65.2 0.1 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|305663262|ref|YP_003859550.1| - 3.4e-05 24.1 1.0 8.1e-05 22.8 1.0 1.6 1 0 0 1 1 1 1 Probable transposase DUF2614 PF11023.8 gi|305663262|ref|YP_003859550.1| - 0.099 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain Asp_protease_2 PF13650.6 gi|305663263|ref|YP_003859551.1| - 1.4e-06 28.8 0.1 3.5e-06 27.6 0.1 1.6 2 0 0 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|305663263|ref|YP_003859551.1| - 4e-06 27.3 0.2 5.1e-06 27.0 0.2 1.3 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|305663263|ref|YP_003859551.1| - 0.0029 17.9 0.3 0.0096 16.2 0.3 1.8 1 1 0 1 1 1 1 Retroviral aspartyl protease HD PF01966.22 gi|305663265|ref|YP_003859553.1| - 5.6e-08 33.0 0.5 9.3e-08 32.3 0.5 1.4 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|305663265|ref|YP_003859553.1| - 0.016 14.7 0.0 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 HDOD domain HTH_24 PF13412.6 gi|305663267|ref|YP_003859555.1| - 5.4e-10 38.7 0.0 9e-10 38.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|305663267|ref|YP_003859555.1| - 1.2e-08 34.7 0.1 2e-08 34.0 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|305663267|ref|YP_003859555.1| - 4.4e-08 32.9 0.0 6.2e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|305663267|ref|YP_003859555.1| - 2.2e-06 27.6 0.0 3.6e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|305663267|ref|YP_003859555.1| - 7e-06 25.8 0.0 1.1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|305663267|ref|YP_003859555.1| - 3e-05 23.7 0.0 5.9e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|305663267|ref|YP_003859555.1| - 3e-05 23.7 0.0 4.6e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|305663267|ref|YP_003859555.1| - 7.7e-05 22.8 0.0 0.00013 22.1 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|305663267|ref|YP_003859555.1| - 8.5e-05 22.4 0.0 0.00015 21.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|305663267|ref|YP_003859555.1| - 0.00013 21.9 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|305663267|ref|YP_003859555.1| - 0.00016 22.0 0.1 0.00032 21.0 0.0 1.5 2 0 0 2 2 1 1 Transcriptional regulator HTH_38 PF13936.6 gi|305663267|ref|YP_003859555.1| - 0.00067 19.4 0.1 0.0014 18.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|305663267|ref|YP_003859555.1| - 0.00067 19.3 0.0 0.0015 18.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 gi|305663267|ref|YP_003859555.1| - 0.0015 18.4 0.0 0.0026 17.7 0.0 1.4 1 0 0 1 1 1 1 MarR family CENP-B_N PF04218.13 gi|305663267|ref|YP_003859555.1| - 0.0032 17.1 0.0 0.006 16.2 0.0 1.4 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_27 PF13463.6 gi|305663267|ref|YP_003859555.1| - 0.0044 17.5 0.2 0.21 12.1 0.0 2.3 1 1 0 2 2 2 1 Winged helix DNA-binding domain FUR PF01475.19 gi|305663267|ref|YP_003859555.1| - 0.0045 17.1 1.2 0.17 12.0 0.0 2.1 2 0 0 2 2 2 1 Ferric uptake regulator family DUF2250 PF10007.9 gi|305663267|ref|YP_003859555.1| - 0.0047 17.0 0.0 0.0065 16.6 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Phage_rep_org_N PF09681.10 gi|305663267|ref|YP_003859555.1| - 0.005 16.7 0.0 0.012 15.6 0.0 1.5 1 1 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) MerR_1 PF13411.6 gi|305663267|ref|YP_003859555.1| - 0.0062 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein Phage_terminase PF10668.9 gi|305663267|ref|YP_003859555.1| - 0.0094 15.9 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 Phage terminase small subunit RepL PF05732.11 gi|305663267|ref|YP_003859555.1| - 0.025 14.0 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_micro PF17007.5 gi|305663267|ref|YP_003859555.1| - 0.032 13.1 0.1 0.043 12.6 0.1 1.3 1 1 0 1 1 1 0 HTH-like HTH_30 PF13556.6 gi|305663267|ref|YP_003859555.1| - 0.042 13.7 1.6 0.056 13.3 0.0 2.0 2 2 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.16 gi|305663267|ref|YP_003859555.1| - 0.043 13.3 0.0 0.081 12.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.19 gi|305663267|ref|YP_003859555.1| - 0.045 13.3 0.0 0.078 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family FaeA PF04703.12 gi|305663267|ref|YP_003859555.1| - 0.071 13.5 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein Terminase_5 PF06056.12 gi|305663267|ref|YP_003859555.1| - 0.071 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|305663267|ref|YP_003859555.1| - 0.085 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|305663267|ref|YP_003859555.1| - 0.091 12.7 0.0 0.23 11.4 0.0 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF3394 PF11874.8 gi|305663267|ref|YP_003859555.1| - 0.16 11.7 0.0 0.18 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3394) HTH_36 PF13730.6 gi|305663267|ref|YP_003859555.1| - 0.17 11.9 0.1 0.51 10.3 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain TMEM239 PF15841.5 gi|305663268|ref|YP_003859556.1| - 0.49 10.3 4.1 0.6 10.0 4.1 1.2 1 0 0 1 1 1 0 Transmembrane protein 239 family DGC PF08859.11 gi|305663269|ref|YP_003859557.1| - 6.8e-30 103.3 0.4 8.3e-30 103.0 0.4 1.1 1 0 0 1 1 1 1 DGC domain ABC_tran PF00005.27 gi|305663272|ref|YP_003859560.1| - 4.3e-24 85.6 0.0 5.8e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663272|ref|YP_003859560.1| - 6.4e-14 52.4 0.0 2.5e-08 34.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663272|ref|YP_003859560.1| - 1.6e-06 27.7 0.2 0.036 13.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|305663272|ref|YP_003859560.1| - 0.0002 21.9 0.0 0.00042 20.9 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|305663272|ref|YP_003859560.1| - 0.00045 19.9 0.0 0.00079 19.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|305663272|ref|YP_003859560.1| - 0.0022 17.3 0.0 0.7 9.0 0.0 2.1 2 0 0 2 2 2 2 NB-ARC domain LPD18 PF18832.1 gi|305663272|ref|YP_003859560.1| - 0.012 15.7 0.0 0.062 13.4 0.0 1.9 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 18 AAA_18 PF13238.6 gi|305663272|ref|YP_003859560.1| - 0.07 13.7 0.1 7.3 7.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|305663272|ref|YP_003859560.1| - 0.081 13.2 0.0 0.91 9.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Lip_prot_lig_C PF10437.9 gi|305663272|ref|YP_003859560.1| - 0.11 12.4 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus AAA_5 PF07728.14 gi|305663272|ref|YP_003859560.1| - 0.12 12.4 0.3 8.2 6.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 gi|305663272|ref|YP_003859560.1| - 0.12 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_16 PF13191.6 gi|305663272|ref|YP_003859560.1| - 0.16 12.4 0.0 0.2 12.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain 12TM_1 PF09847.9 gi|305663273|ref|YP_003859561.1| - 6e-16 58.6 51.9 8.1e-16 58.2 51.9 1.2 1 0 0 1 1 1 1 Membrane protein of 12 TMs Radical_SAM PF04055.21 gi|305663275|ref|YP_003859563.1| - 3.8e-15 56.7 0.0 7.8e-15 55.6 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|305663275|ref|YP_003859563.1| - 3.7e-09 36.7 0.3 0.002 17.9 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) CrgA PF06781.12 gi|305663276|ref|YP_003859564.1| - 0.038 14.1 0.4 0.061 13.4 0.4 1.3 1 0 0 1 1 1 0 Cell division protein CrgA RTTN_N PF14726.6 gi|305663276|ref|YP_003859564.1| - 0.049 14.4 0.0 0.099 13.4 0.0 1.5 1 0 0 1 1 1 0 Rotatin, an armadillo repeat protein, centriole functioning P22_AR_C PF10548.9 gi|305663276|ref|YP_003859564.1| - 0.064 13.4 1.7 24 5.2 0.0 3.1 2 1 1 3 3 3 0 P22AR C-terminal domain AAA_3 PF07726.11 gi|305663277|ref|YP_003859565.1| - 1.8e-64 215.5 0.1 2.7e-64 214.9 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|305663277|ref|YP_003859565.1| - 1.7e-24 85.4 0.3 5.6e-24 83.8 0.0 2.0 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|305663277|ref|YP_003859565.1| - 2.1e-17 63.4 0.0 5.5e-17 62.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|305663277|ref|YP_003859565.1| - 1.7e-09 38.2 0.0 4.8e-09 36.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|305663277|ref|YP_003859565.1| - 7.3e-07 29.1 0.0 0.0009 19.0 0.0 2.3 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|305663277|ref|YP_003859565.1| - 9.3e-07 28.2 0.0 2e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|305663277|ref|YP_003859565.1| - 1.1e-05 25.3 0.1 4.7e-05 23.1 0.1 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|305663277|ref|YP_003859565.1| - 0.015 14.7 0.3 4.7 6.5 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|305663277|ref|YP_003859565.1| - 0.022 15.2 0.1 0.54 10.6 0.0 2.2 1 1 1 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|305663277|ref|YP_003859565.1| - 0.022 14.5 0.1 1.8 8.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain MCM_lid PF17855.1 gi|305663277|ref|YP_003859565.1| - 0.032 14.6 0.0 0.22 12.0 0.0 2.0 1 1 1 2 2 2 0 MCM AAA-lid domain AAA_2 PF07724.14 gi|305663277|ref|YP_003859565.1| - 0.049 13.7 0.3 0.25 11.5 0.0 2.2 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_lid_8 PF17868.1 gi|305663277|ref|YP_003859565.1| - 0.093 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA lid domain DUF4129 PF13559.6 gi|305663278|ref|YP_003859566.1| - 5.8e-06 26.5 2.4 2.3e-05 24.5 1.5 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) HEPN PF05168.14 gi|305663278|ref|YP_003859566.1| - 0.019 15.1 1.6 2.6 8.2 0.2 3.1 3 0 0 3 3 3 0 HEPN domain EF-hand_7 PF13499.6 gi|305663278|ref|YP_003859566.1| - 0.056 13.9 0.4 0.25 11.8 0.0 2.3 3 0 0 3 3 3 0 EF-hand domain pair Uso1_p115_head PF04869.14 gi|305663278|ref|YP_003859566.1| - 0.1 11.7 0.2 0.16 11.1 0.2 1.2 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, head region Desmo_N PF06771.11 gi|305663278|ref|YP_003859566.1| - 1.3 9.4 6.9 0.46 10.9 1.0 2.9 3 1 0 3 3 3 0 Viral Desmoplakin N-terminus Multi_Drug_Res PF00893.19 gi|305663280|ref|YP_003859568.1| - 0.027 15.1 3.1 0.032 14.9 3.1 1.0 1 0 0 1 1 1 0 Small Multidrug Resistance protein DUF423 PF04241.15 gi|305663280|ref|YP_003859568.1| - 0.043 14.0 3.3 0.056 13.6 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF423) UPF0242 PF06785.11 gi|305663280|ref|YP_003859568.1| - 0.084 13.0 0.6 0.089 12.9 0.4 1.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF3917 PF13055.6 gi|305663280|ref|YP_003859568.1| - 0.11 13.0 4.3 0.13 12.7 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3917) DUF4337 PF14235.6 gi|305663280|ref|YP_003859568.1| - 2 8.5 4.0 2.5 8.2 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF3951 PF13131.6 gi|305663280|ref|YP_003859568.1| - 6.9 7.0 7.8 1.5 9.0 3.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3951) DUF202 PF02656.15 gi|305663280|ref|YP_003859568.1| - 7.9 7.0 9.1 3.9 8.0 2.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) SPT_ssu-like PF11779.8 gi|305663280|ref|YP_003859568.1| - 9.4 5.9 9.2 8.6 6.1 1.4 2.3 1 1 1 2 2 2 0 Small subunit of serine palmitoyltransferase-like DUF58 PF01882.18 gi|305663282|ref|YP_003859570.1| - 8.1e-18 64.5 0.0 1.4e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 BPD_transp_2 PF02653.16 gi|305663283|ref|YP_003859571.1| - 1.3e-29 103.2 41.5 1.3e-29 103.2 41.5 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Reticulon PF02453.17 gi|305663283|ref|YP_003859571.1| - 4.1 7.3 9.2 0.73 9.8 3.9 2.3 2 1 0 2 2 2 0 Reticulon ABC_tran PF00005.27 gi|305663284|ref|YP_003859572.1| - 9.9e-47 158.9 0.0 2.8e-22 79.7 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|305663284|ref|YP_003859572.1| - 6.5e-14 52.4 0.9 8.4e-08 32.4 0.4 3.2 3 0 0 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663284|ref|YP_003859572.1| - 2.2e-05 24.0 0.0 0.0059 16.1 0.0 3.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|305663284|ref|YP_003859572.1| - 0.0018 18.1 0.1 0.0029 17.4 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|305663284|ref|YP_003859572.1| - 0.0054 17.3 0.0 0.01 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|305663284|ref|YP_003859572.1| - 0.012 15.4 3.0 5.1 6.8 0.0 3.3 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|305663284|ref|YP_003859572.1| - 0.021 14.5 0.4 0.057 13.2 0.1 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|305663284|ref|YP_003859572.1| - 0.044 13.5 0.1 1.3 8.7 0.0 2.9 3 0 0 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|305663284|ref|YP_003859572.1| - 0.064 13.1 0.1 1.1 9.2 0.1 2.4 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|305663284|ref|YP_003859572.1| - 0.13 12.7 0.0 10 6.5 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|305663284|ref|YP_003859572.1| - 0.14 10.9 5.2 5 5.8 0.2 3.9 4 1 0 4 4 4 0 Predicted ATPase of the ABC class Peripla_BP_4 PF13407.6 gi|305663285|ref|YP_003859573.1| - 6.6e-51 173.4 1.1 9.1e-51 172.9 1.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 gi|305663285|ref|YP_003859573.1| - 1e-09 38.2 0.0 1.6e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family ABC_sub_bind PF04392.12 gi|305663285|ref|YP_003859573.1| - 0.018 14.3 0.1 0.03 13.6 0.1 1.3 1 0 0 1 1 1 0 ABC transporter substrate binding protein HGD-D PF06050.13 gi|305663285|ref|YP_003859573.1| - 0.23 11.2 0.0 0.35 10.6 0.0 1.2 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Na_H_Exchanger PF00999.21 gi|305663286|ref|YP_003859574.1| - 4.3e-11 42.2 53.1 4.3e-11 42.2 53.1 2.3 2 0 0 2 2 2 1 Sodium/hydrogen exchanger family Cyclophil_like PF04126.13 gi|305663287|ref|YP_003859575.1| - 1.7e-25 89.2 0.0 2.5e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 gi|305663287|ref|YP_003859575.1| - 0.0024 17.8 0.0 0.0036 17.2 0.0 1.3 1 0 0 1 1 1 1 Cyclophilin-like family EzrA PF06160.12 gi|305663288|ref|YP_003859576.1| - 2.6e-05 22.6 2.9 3.7e-05 22.1 2.9 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA YqzH PF14164.6 gi|305663288|ref|YP_003859576.1| - 0.004 17.2 0.3 0.0089 16.1 0.3 1.6 1 0 0 1 1 1 1 YqzH-like protein BLOC1_2 PF10046.9 gi|305663288|ref|YP_003859576.1| - 0.01 16.1 1.7 0.1 12.9 0.2 2.6 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMPIT PF07851.13 gi|305663288|ref|YP_003859576.1| - 0.011 15.0 1.0 0.033 13.4 1.0 1.9 1 1 0 1 1 1 0 TMPIT-like protein Prominin PF05478.11 gi|305663288|ref|YP_003859576.1| - 0.023 12.7 0.1 0.038 11.9 0.1 1.3 1 1 0 1 1 1 0 Prominin DUF2203 PF09969.9 gi|305663288|ref|YP_003859576.1| - 0.026 15.2 2.2 0.059 14.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF1664 PF07889.12 gi|305663288|ref|YP_003859576.1| - 0.029 14.4 0.8 0.1 12.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Snapin_Pallidin PF14712.6 gi|305663288|ref|YP_003859576.1| - 0.039 14.4 1.4 0.38 11.2 0.0 2.6 3 0 0 3 3 2 0 Snapin/Pallidin Laminin_II PF06009.12 gi|305663288|ref|YP_003859576.1| - 0.045 13.8 1.1 0.17 11.9 0.9 1.9 1 1 0 1 1 1 0 Laminin Domain II DUF730 PF05325.11 gi|305663288|ref|YP_003859576.1| - 0.055 13.5 0.6 0.055 13.5 0.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF730) DUF16 PF01519.16 gi|305663288|ref|YP_003859576.1| - 0.066 13.7 2.4 0.19 12.2 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF16 Nmad5 PF18757.1 gi|305663288|ref|YP_003859576.1| - 0.074 13.3 1.6 0.58 10.3 0.0 2.1 2 0 0 2 2 2 0 Nucleotide modification associated domain 5 DUF4375 PF14300.6 gi|305663288|ref|YP_003859576.1| - 0.093 13.0 2.8 3.8 7.8 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4375) DNA_topoisoIV PF00521.20 gi|305663288|ref|YP_003859576.1| - 0.28 10.0 4.9 0.38 9.6 4.9 1.1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A MtrG PF04210.13 gi|305663288|ref|YP_003859576.1| - 0.89 9.4 3.2 11 6.0 0.2 2.9 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Fib_alpha PF08702.10 gi|305663288|ref|YP_003859576.1| - 1.7 8.8 7.1 0.22 11.7 1.7 2.3 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family FlaC_arch PF05377.11 gi|305663288|ref|YP_003859576.1| - 2 8.8 9.2 1.4 9.4 0.6 3.4 2 2 1 3 3 3 0 Flagella accessory protein C (FlaC) ABC_tran PF00005.27 gi|305663289|ref|YP_003859577.1| - 9.9e-34 116.8 0.0 1.3e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663289|ref|YP_003859577.1| - 2.5e-16 60.4 2.0 2.2e-08 34.3 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663289|ref|YP_003859577.1| - 2.9e-07 30.2 0.1 4e-06 26.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|305663289|ref|YP_003859577.1| - 6.2e-07 29.4 0.4 0.00013 21.8 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|305663289|ref|YP_003859577.1| - 6e-06 26.9 0.0 8.1e-06 26.5 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305663289|ref|YP_003859577.1| - 1.8e-05 25.2 0.0 2.9e-05 24.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|305663289|ref|YP_003859577.1| - 6.5e-05 23.2 0.7 0.0011 19.3 0.7 2.1 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|305663289|ref|YP_003859577.1| - 0.00012 20.9 0.0 0.093 11.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|305663289|ref|YP_003859577.1| - 0.00015 21.4 0.0 0.00033 20.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|305663289|ref|YP_003859577.1| - 0.00034 20.8 0.0 0.0064 16.7 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TniB PF05621.11 gi|305663289|ref|YP_003859577.1| - 0.00081 18.8 0.8 0.027 13.9 0.3 2.3 2 0 0 2 2 2 1 Bacterial TniB protein PRK PF00485.18 gi|305663289|ref|YP_003859577.1| - 0.0019 18.0 0.2 0.024 14.4 0.0 2.4 3 0 0 3 3 3 1 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.6 gi|305663289|ref|YP_003859577.1| - 0.0042 17.1 0.1 0.044 13.8 0.0 2.1 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|305663289|ref|YP_003859577.1| - 0.0057 16.1 0.0 0.0099 15.3 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|305663289|ref|YP_003859577.1| - 0.0078 16.2 0.4 0.021 14.8 0.0 1.9 3 0 0 3 3 1 1 ATPase domain predominantly from Archaea RNA12 PF10443.9 gi|305663289|ref|YP_003859577.1| - 0.0079 15.0 0.0 0.013 14.3 0.0 1.2 1 0 0 1 1 1 1 RNA12 protein AAA_30 PF13604.6 gi|305663289|ref|YP_003859577.1| - 0.0079 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|305663289|ref|YP_003859577.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_33 PF13671.6 gi|305663289|ref|YP_003859577.1| - 0.016 15.4 0.0 0.043 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|305663289|ref|YP_003859577.1| - 0.018 12.6 0.0 0.023 12.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_ATPase PF09818.9 gi|305663289|ref|YP_003859577.1| - 0.02 13.7 0.3 0.45 9.2 0.1 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.12 gi|305663289|ref|YP_003859577.1| - 0.023 14.0 0.0 0.036 13.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.22 gi|305663289|ref|YP_003859577.1| - 0.023 13.9 0.0 0.07 12.3 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain G-alpha PF00503.20 gi|305663289|ref|YP_003859577.1| - 0.03 13.5 0.0 0.043 13.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit NACHT PF05729.12 gi|305663289|ref|YP_003859577.1| - 0.037 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|305663289|ref|YP_003859577.1| - 0.042 14.3 0.1 0.22 11.9 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DLIC PF05783.11 gi|305663289|ref|YP_003859577.1| - 0.042 12.7 0.0 0.057 12.2 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) RsgA_GTPase PF03193.16 gi|305663289|ref|YP_003859577.1| - 0.045 13.7 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|305663289|ref|YP_003859577.1| - 0.078 12.6 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|305663289|ref|YP_003859577.1| - 0.095 13.0 0.3 0.69 10.2 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|305663289|ref|YP_003859577.1| - 0.15 11.6 0.0 0.94 9.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|305663289|ref|YP_003859577.1| - 0.18 11.4 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|305663290|ref|YP_003859578.1| - 1.3e-70 237.9 50.2 1.6e-70 237.6 50.2 1.1 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|305663291|ref|YP_003859579.1| - 7e-28 97.8 0.0 9.5e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF99 PF01949.16 gi|305663291|ref|YP_003859579.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF99 FmdE PF02663.14 gi|305663292|ref|YP_003859580.1| - 5.6e-38 130.0 0.0 7.4e-38 129.6 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|305663292|ref|YP_003859580.1| - 0.00048 20.0 0.9 0.001 18.9 0.9 1.6 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Zn_ribbon_SprT PF17283.2 gi|305663292|ref|YP_003859580.1| - 0.014 15.2 0.1 0.03 14.2 0.1 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|305663292|ref|YP_003859580.1| - 0.098 12.7 0.3 0.25 11.4 0.1 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Tox-PL-2 PF15643.6 gi|305663292|ref|YP_003859580.1| - 0.17 12.1 0.5 6.2 7.0 0.0 2.8 2 1 1 3 3 3 0 Papain fold toxin 2 Hexapep PF00132.24 gi|305663292|ref|YP_003859580.1| - 1.2 9.0 3.3 0.55 10.0 0.2 2.1 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|305663292|ref|YP_003859580.1| - 1.3 8.9 3.7 0.62 9.9 0.5 2.2 2 1 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase CxxCxxCC PF03692.15 gi|305663293|ref|YP_003859581.1| - 3.2e-12 46.9 1.3 4.8e-12 46.4 1.3 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Syntaxin-18_N PF10496.9 gi|305663293|ref|YP_003859581.1| - 0.039 14.2 0.2 0.061 13.6 0.2 1.3 1 1 0 1 1 1 0 SNARE-complex protein Syntaxin-18 N-terminus Glyco_hydro_12 PF01670.16 gi|305663294|ref|YP_003859582.1| - 1e-20 74.7 0.5 1.6e-20 74.1 0.5 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 IgaA PF07095.11 gi|305663294|ref|YP_003859582.1| - 0.041 11.9 1.1 0.055 11.5 1.1 1.1 1 0 0 1 1 1 0 Intracellular growth attenuator protein IgaA ASCH PF04266.14 gi|305663295|ref|YP_003859583.1| - 6.9e-09 36.3 0.1 8.1e-09 36.0 0.1 1.1 1 0 0 1 1 1 1 ASCH domain FliMN_C PF01052.20 gi|305663295|ref|YP_003859583.1| - 0.032 14.2 0.1 0.046 13.7 0.1 1.3 1 0 0 1 1 1 0 Type III flagellar switch regulator (C-ring) FliN C-term DUF104 PF01954.16 gi|305663295|ref|YP_003859583.1| - 0.035 14.6 1.1 0.077 13.4 1.1 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF104 HTH_20 PF12840.7 gi|305663296|ref|YP_003859584.1| - 5.8e-10 39.1 0.0 1.6e-09 37.7 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|305663296|ref|YP_003859584.1| - 6.8e-10 38.7 0.3 2.3e-07 30.6 0.0 2.8 3 0 0 3 3 3 1 HTH domain HTH_5 PF01022.20 gi|305663296|ref|YP_003859584.1| - 7.4e-10 38.5 0.7 5.3e-09 35.8 0.0 2.5 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|305663296|ref|YP_003859584.1| - 7.8e-07 28.9 0.0 2.3e-06 27.4 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|305663296|ref|YP_003859584.1| - 5e-06 26.0 0.5 3.6e-05 23.2 0.1 2.4 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|305663296|ref|YP_003859584.1| - 1.2e-05 25.0 0.0 4.8e-05 23.1 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|305663296|ref|YP_003859584.1| - 1.9e-05 24.7 0.2 7e-05 22.9 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|305663296|ref|YP_003859584.1| - 2.5e-05 24.2 0.2 4.6e-05 23.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_34 PF13601.6 gi|305663296|ref|YP_003859584.1| - 3.5e-05 23.9 0.0 0.00012 22.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|305663296|ref|YP_003859584.1| - 0.00012 21.9 0.1 0.0016 18.3 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|305663296|ref|YP_003859584.1| - 0.00027 20.8 0.0 0.0012 18.8 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_7 PF02796.15 gi|305663296|ref|YP_003859584.1| - 0.00056 19.9 0.1 0.0023 17.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 gi|305663296|ref|YP_003859584.1| - 0.00075 19.6 0.3 0.05 13.8 0.0 3.2 4 0 0 4 4 3 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|305663296|ref|YP_003859584.1| - 0.0017 18.6 0.0 0.0067 16.7 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_22 PF13309.6 gi|305663296|ref|YP_003859584.1| - 0.0025 17.8 0.3 0.0098 16.0 0.1 2.0 2 0 0 2 2 2 1 HTH domain LexA_DNA_bind PF01726.16 gi|305663296|ref|YP_003859584.1| - 0.0026 17.5 0.0 0.0069 16.1 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|305663296|ref|YP_003859584.1| - 0.0031 17.4 0.0 0.011 15.7 0.0 1.9 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|305663296|ref|YP_003859584.1| - 0.0036 17.2 0.1 0.048 13.6 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|305663296|ref|YP_003859584.1| - 0.0072 16.0 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_12 PF08461.10 gi|305663296|ref|YP_003859584.1| - 0.012 15.6 0.0 0.037 14.0 0.0 1.9 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Fe_dep_repress PF01325.19 gi|305663296|ref|YP_003859584.1| - 0.013 15.7 0.0 0.53 10.5 0.0 2.8 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|305663296|ref|YP_003859584.1| - 0.019 14.8 0.1 0.13 12.1 0.1 2.1 2 0 0 2 2 2 0 HTH DNA binding domain TetR_N PF00440.23 gi|305663296|ref|YP_003859584.1| - 0.02 14.7 0.1 0.045 13.5 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_45 PF14947.6 gi|305663296|ref|YP_003859584.1| - 0.027 14.5 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_DeoR PF08220.12 gi|305663296|ref|YP_003859584.1| - 0.029 14.1 0.2 1.6 8.5 0.0 2.4 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_38 PF13936.6 gi|305663296|ref|YP_003859584.1| - 0.032 14.0 0.9 0.032 14.0 0.9 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|305663296|ref|YP_003859584.1| - 0.037 14.1 0.0 0.083 13.0 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_23 PF13384.6 gi|305663296|ref|YP_003859584.1| - 0.043 13.6 0.3 0.11 12.3 0.1 1.8 2 0 0 2 2 1 0 Homeodomain-like domain PadR PF03551.14 gi|305663296|ref|YP_003859584.1| - 0.061 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Sigma70_r4_2 PF08281.12 gi|305663296|ref|YP_003859584.1| - 0.068 12.8 0.2 0.27 11.0 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 UPF0122 PF04297.14 gi|305663296|ref|YP_003859584.1| - 0.08 13.2 0.0 0.21 11.8 0.0 1.7 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like GerE PF00196.19 gi|305663296|ref|YP_003859584.1| - 0.085 12.4 0.1 0.4 10.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_AsnC-type PF13404.6 gi|305663296|ref|YP_003859584.1| - 0.11 12.4 0.3 0.64 9.9 0.1 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_6 PF01418.17 gi|305663296|ref|YP_003859584.1| - 0.15 12.1 0.0 0.44 10.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family TatD_DNase PF01026.21 gi|305663297|ref|YP_003859585.1| - 2e-44 151.9 0.0 2.4e-44 151.6 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Radical_SAM PF04055.21 gi|305663298|ref|YP_003859586.1| - 1.9e-15 57.6 0.1 1.2e-14 55.0 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily zf-ribbon_3 PF13248.6 gi|305663298|ref|YP_003859586.1| - 0.00021 20.6 5.8 0.096 12.1 0.3 3.1 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|305663298|ref|YP_003859586.1| - 0.00028 20.5 0.9 0.85 9.4 0.1 2.9 2 0 0 2 2 2 2 zinc-ribbon domain zf-IS66 PF13005.7 gi|305663298|ref|YP_003859586.1| - 0.013 15.9 0.0 0.91 10.0 0.0 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 DZR PF12773.7 gi|305663298|ref|YP_003859586.1| - 0.014 15.5 2.0 0.046 13.7 0.0 2.4 2 0 0 2 2 2 0 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|305663298|ref|YP_003859586.1| - 0.046 13.5 0.6 0.63 9.9 0.1 2.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|305663298|ref|YP_003859586.1| - 0.081 13.1 1.9 2 8.6 0.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain zf-4CXXC_R1 PF10497.9 gi|305663298|ref|YP_003859586.1| - 0.19 12.0 0.0 0.19 12.0 0.0 2.8 4 0 0 4 4 4 0 Zinc-finger domain of monoamine-oxidase A repressor R1 RNA_POL_M_15KD PF02150.16 gi|305663298|ref|YP_003859586.1| - 0.44 10.5 5.5 16 5.5 0.1 2.8 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|305663298|ref|YP_003859586.1| - 0.49 10.0 3.0 6.9 6.3 2.9 2.5 1 1 0 1 1 1 0 TFIIB zinc-binding IBR PF01485.21 gi|305663298|ref|YP_003859586.1| - 0.51 10.6 0.1 0.51 10.6 0.1 2.3 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain ABC_tran PF00005.27 gi|305663299|ref|YP_003859587.1| - 2.5e-25 89.6 0.0 3.5e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663299|ref|YP_003859587.1| - 7.5e-11 42.4 0.0 0.00021 21.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663299|ref|YP_003859587.1| - 3.6e-05 23.3 0.0 0.017 14.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|305663299|ref|YP_003859587.1| - 0.00055 19.6 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|305663299|ref|YP_003859587.1| - 0.00067 19.8 0.0 0.0051 17.0 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.8 gi|305663299|ref|YP_003859587.1| - 0.0019 15.8 0.0 0.0028 15.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_18 PF13238.6 gi|305663299|ref|YP_003859587.1| - 0.0027 18.2 0.7 1.1 9.8 0.7 2.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|305663299|ref|YP_003859587.1| - 0.0038 17.4 0.1 0.043 14.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|305663299|ref|YP_003859587.1| - 0.0044 16.8 0.1 0.011 15.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|305663299|ref|YP_003859587.1| - 0.005 17.4 1.0 0.0089 16.6 0.0 1.7 2 1 0 2 2 2 1 AAA domain TAF PF02969.17 gi|305663299|ref|YP_003859587.1| - 0.016 15.4 0.1 0.035 14.3 0.1 1.6 2 0 0 2 2 1 0 TATA box binding protein associated factor (TAF) AAA_16 PF13191.6 gi|305663299|ref|YP_003859587.1| - 0.032 14.6 0.0 0.072 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|305663299|ref|YP_003859587.1| - 0.034 14.1 0.2 0.077 12.9 0.2 1.6 1 1 0 1 1 1 0 NACHT domain SRP54 PF00448.22 gi|305663299|ref|YP_003859587.1| - 0.035 13.7 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|305663299|ref|YP_003859587.1| - 0.065 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|305663299|ref|YP_003859587.1| - 0.072 12.4 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_13 PF13166.6 gi|305663299|ref|YP_003859587.1| - 0.078 11.6 0.0 0.35 9.4 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|305663299|ref|YP_003859587.1| - 0.082 12.9 0.1 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|305663300|ref|YP_003859588.1| - 4.2e-10 39.7 16.3 4.2e-10 39.7 16.3 1.6 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|305663301|ref|YP_003859589.1| - 1.5e-10 41.2 0.0 2.2e-10 40.7 0.0 1.2 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|305663301|ref|YP_003859589.1| - 3.4e-05 23.7 0.0 0.00025 20.9 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|305663301|ref|YP_003859589.1| - 0.0099 15.0 0.0 0.015 14.4 0.0 1.4 1 1 0 1 1 1 1 PBP superfamily domain PsbN PF02468.15 gi|305663301|ref|YP_003859589.1| - 0.18 11.7 2.1 0.48 10.3 2.1 1.7 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) Metallophos_2 PF12850.7 gi|305663302|ref|YP_003859590.1| - 1.3e-05 25.4 0.1 0.00012 22.3 0.1 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|305663302|ref|YP_003859590.1| - 0.00071 20.1 1.7 0.0054 17.3 1.7 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase SIL1 PF16782.5 gi|305663305|ref|YP_003859593.1| - 0.047 12.9 0.0 0.072 12.3 0.0 1.4 1 1 0 1 1 1 0 Nucleotide exchange factor SIL1 Band_7_1 PF13421.6 gi|305663306|ref|YP_003859594.1| - 1.8e-26 93.2 0.0 2.6e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.25 gi|305663306|ref|YP_003859594.1| - 7.8e-15 55.3 0.1 1.1e-14 54.9 0.1 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family zf-ribbon_3 PF13248.6 gi|305663306|ref|YP_003859594.1| - 4.4e-08 32.2 7.2 5.7e-06 25.5 4.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|305663306|ref|YP_003859594.1| - 1e-06 28.3 10.4 0.018 14.7 8.2 3.3 2 1 1 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|305663306|ref|YP_003859594.1| - 1.2e-06 28.5 4.8 2.3e-06 27.5 4.8 1.5 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|305663306|ref|YP_003859594.1| - 0.00013 21.9 16.2 0.044 13.9 0.8 2.9 2 1 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|305663306|ref|YP_003859594.1| - 0.003 18.3 0.6 0.18 12.6 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon family zf-NADH-PPase PF09297.11 gi|305663306|ref|YP_003859594.1| - 0.21 11.3 9.7 1.9 8.2 0.0 3.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|305663306|ref|YP_003859594.1| - 0.22 11.7 4.7 0.57 10.4 0.5 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.12 gi|305663306|ref|YP_003859594.1| - 0.6 9.7 6.7 4.3 6.9 2.8 3.0 2 1 0 2 2 2 0 TFIIB zinc-binding DUF2116 PF09889.9 gi|305663306|ref|YP_003859594.1| - 1.2 9.2 6.1 5.9 7.0 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Nudix_N_2 PF14803.6 gi|305663306|ref|YP_003859594.1| - 1.7 8.6 11.4 4.2 7.4 1.8 3.2 3 0 0 3 3 3 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|305663306|ref|YP_003859594.1| - 3.8 7.7 7.4 4.1 7.6 2.3 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|305663306|ref|YP_003859594.1| - 4.4 7.4 9.5 3.7 7.7 0.3 3.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_3 PF13920.6 gi|305663306|ref|YP_003859594.1| - 5.4 7.0 6.0 17 5.4 6.1 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.6 gi|305663307|ref|YP_003859595.1| - 0.0029 17.3 2.9 0.013 15.2 2.9 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|305663307|ref|YP_003859595.1| - 0.0043 16.4 4.2 0.018 14.4 4.2 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|305663307|ref|YP_003859595.1| - 0.021 14.4 0.2 0.039 13.6 0.2 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|305663307|ref|YP_003859595.1| - 0.056 13.5 0.2 0.11 12.5 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|305663307|ref|YP_003859595.1| - 0.21 11.3 2.1 0.2 11.3 0.5 1.8 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.12 gi|305663307|ref|YP_003859595.1| - 0.55 9.8 1.7 1.5 8.4 1.6 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.6 gi|305663307|ref|YP_003859595.1| - 3.7 8.1 8.4 37 4.9 0.3 3.3 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain zinc_ribbon_5 PF13719.6 gi|305663308|ref|YP_003859596.1| - 0.00022 20.9 0.3 0.027 14.2 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|305663308|ref|YP_003859596.1| - 0.0009 19.1 1.3 0.024 14.5 1.9 2.3 1 1 1 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|305663308|ref|YP_003859596.1| - 0.0013 18.1 3.3 0.4 10.2 0.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-CHCC PF10276.9 gi|305663308|ref|YP_003859596.1| - 0.0042 17.1 5.7 0.14 12.3 0.8 2.5 2 0 0 2 2 2 2 Zinc-finger domain CpXC PF14353.6 gi|305663308|ref|YP_003859596.1| - 0.0056 16.7 1.7 0.17 12.0 0.1 2.6 1 1 1 2 2 2 1 CpXC protein zf-C2H2_4 PF13894.6 gi|305663308|ref|YP_003859596.1| - 0.018 15.8 1.3 6.4 7.9 0.1 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger Cys_rich_CPXG PF14255.6 gi|305663308|ref|YP_003859596.1| - 0.018 14.9 3.0 3.5 7.6 0.1 2.6 2 0 0 2 2 2 0 Cysteine-rich CPXCG Zn_ribbon_SprT PF17283.2 gi|305663308|ref|YP_003859596.1| - 0.043 13.7 1.5 0.074 13.0 1.5 1.4 1 0 0 1 1 1 0 SprT-like zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|305663308|ref|YP_003859596.1| - 0.046 14.0 3.4 5.9 7.2 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon DZR PF12773.7 gi|305663308|ref|YP_003859596.1| - 0.05 13.6 0.5 0.1 12.7 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon Mu-like_Com PF10122.9 gi|305663308|ref|YP_003859596.1| - 0.053 13.0 0.4 2 8.0 0.1 2.4 2 0 0 2 2 2 0 Mu-like prophage protein Com DUF3938 PF13074.6 gi|305663308|ref|YP_003859596.1| - 0.077 13.2 1.2 0.19 12.0 1.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3938) zf-Di19 PF05605.12 gi|305663308|ref|YP_003859596.1| - 0.12 12.7 6.1 3.8 7.9 0.9 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.6 gi|305663308|ref|YP_003859596.1| - 0.18 11.6 8.0 1.4 8.8 8.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain IBR PF01485.21 gi|305663308|ref|YP_003859596.1| - 0.23 11.7 0.8 0.69 10.2 0.5 1.9 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain UPF0547 PF10571.9 gi|305663308|ref|YP_003859596.1| - 0.25 11.5 4.1 1.9 8.6 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_7 PF02591.15 gi|305663308|ref|YP_003859596.1| - 0.27 11.5 1.9 22 5.3 0.2 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-C2H2 PF00096.26 gi|305663308|ref|YP_003859596.1| - 0.29 11.7 4.0 5.4 7.7 0.8 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.12 gi|305663308|ref|YP_003859596.1| - 0.64 9.6 5.8 3 7.4 0.5 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-H2C2_2 PF13465.6 gi|305663308|ref|YP_003859596.1| - 0.65 10.5 2.5 24 5.5 0.5 2.4 2 0 0 2 2 2 0 Zinc-finger double domain Gly-zipper_YMGG PF13441.6 gi|305663308|ref|YP_003859596.1| - 2.5 7.9 5.0 4.5 7.1 5.0 1.3 1 0 0 1 1 1 0 YMGG-like Gly-zipper zf-C2HC_2 PF13913.6 gi|305663308|ref|YP_003859596.1| - 5.9 6.9 5.6 19 5.3 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Phage_int_SAM_1 PF02899.17 gi|305663309|ref|YP_003859597.1| - 5.4e-06 26.6 0.8 9.8e-06 25.8 0.8 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|305663309|ref|YP_003859597.1| - 1.4e-05 25.4 1.6 0.00012 22.5 1.5 2.1 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|305663309|ref|YP_003859597.1| - 0.001 19.3 0.9 0.0019 18.5 0.9 1.5 1 0 0 1 1 1 1 Phage integrase SAM-like domain RHH_3 PF12651.7 gi|305663309|ref|YP_003859597.1| - 0.0063 16.5 0.5 0.053 13.5 0.0 2.5 2 0 0 2 2 2 1 Ribbon-helix-helix domain DNA_pol_phi PF04931.13 gi|305663309|ref|YP_003859597.1| - 0.01 14.0 0.0 0.011 13.9 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase phi DUF1048 PF06304.11 gi|305663309|ref|YP_003859597.1| - 0.054 13.9 0.1 0.26 11.7 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1048) Glutaredoxin PF00462.24 gi|305663309|ref|YP_003859597.1| - 0.1 12.9 0.0 0.55 10.5 0.0 2.1 2 0 0 2 2 2 0 Glutaredoxin Rap1a PF18602.1 gi|305663309|ref|YP_003859597.1| - 0.13 12.6 0.1 1.7 9.0 0.0 2.4 1 1 2 3 3 3 0 Rap1a immunity proteins NurA PF09376.10 gi|305663310|ref|YP_003859598.1| - 2.4e-12 47.1 1.4 3.3e-12 46.6 1.4 1.2 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|305663311|ref|YP_003859599.1| - 5.6e-10 39.7 0.7 1e-09 38.8 0.7 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|305663311|ref|YP_003859599.1| - 0.0005 20.4 0.3 2.1 8.6 0.1 3.4 3 0 0 3 3 3 1 AAA domain DUF853 PF05872.12 gi|305663311|ref|YP_003859599.1| - 0.0013 17.4 0.0 1.1 7.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA PF00004.29 gi|305663311|ref|YP_003859599.1| - 0.0016 18.9 6.5 0.017 15.6 0.1 3.2 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|305663311|ref|YP_003859599.1| - 0.0019 17.2 0.9 0.0032 16.4 0.9 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|305663311|ref|YP_003859599.1| - 0.0033 17.4 0.2 0.31 11.0 0.1 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.21 gi|305663311|ref|YP_003859599.1| - 0.0038 16.8 0.2 0.0072 15.9 0.2 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_24 PF13479.6 gi|305663311|ref|YP_003859599.1| - 0.017 14.8 0.1 0.03 14.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|305663311|ref|YP_003859599.1| - 0.026 14.9 2.2 0.026 14.8 0.3 1.9 2 1 1 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|305663311|ref|YP_003859599.1| - 0.089 12.1 0.3 0.89 8.9 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family Glyco_hydro_35 PF01301.19 gi|305663312|ref|YP_003859600.1| - 1.9e-74 251.1 0.1 2.7e-74 250.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.15 gi|305663312|ref|YP_003859600.1| - 2.6e-07 30.3 0.0 2e-06 27.4 0.0 2.3 2 1 0 2 2 2 1 Beta-galactosidase BetaGal_dom4_5 PF13364.6 gi|305663312|ref|YP_003859600.1| - 0.00012 22.6 0.0 0.00042 20.8 0.0 1.9 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Cellulase PF00150.18 gi|305663312|ref|YP_003859600.1| - 0.15 11.4 0.0 0.3 10.5 0.0 1.4 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) Adenine_deam_C PF13382.6 gi|305663313|ref|YP_003859601.1| - 1.9e-50 170.5 0.0 2.8e-50 170.0 0.0 1.3 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|305663313|ref|YP_003859601.1| - 2.3e-18 66.6 0.2 2.8e-16 59.8 0.2 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|305663313|ref|YP_003859601.1| - 2.6e-11 43.7 0.3 7.6e-05 22.4 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase family IMPDH PF00478.25 gi|305663314|ref|YP_003859602.1| - 2.6e-103 345.6 1.3 3.2e-103 345.4 1.3 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|305663314|ref|YP_003859602.1| - 1.7e-11 44.1 0.5 2.3e-07 30.5 0.6 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|305663314|ref|YP_003859602.1| - 1.6e-10 40.6 1.7 2.2e-09 36.8 1.3 2.6 3 0 0 3 3 3 1 FMN-dependent dehydrogenase CBS PF00571.28 gi|305663314|ref|YP_003859602.1| - 3.1e-09 37.1 3.3 1e-07 32.3 0.4 3.6 3 0 0 3 3 3 1 CBS domain Glu_synthase PF01645.17 gi|305663314|ref|YP_003859602.1| - 2.3e-07 30.3 0.7 3.6e-07 29.7 0.7 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|305663314|ref|YP_003859602.1| - 0.00023 20.5 1.0 0.0004 19.7 1.0 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|305663314|ref|YP_003859602.1| - 0.011 15.2 0.2 0.032 13.7 0.2 1.7 1 0 0 1 1 1 0 Histidine biosynthesis protein ThiG PF05690.14 gi|305663314|ref|YP_003859602.1| - 0.022 14.0 0.7 0.04 13.2 0.7 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Occludin_ELL PF07303.13 gi|305663315|ref|YP_003859603.1| - 0.082 13.6 0.2 0.082 13.6 0.2 2.3 2 2 0 2 2 2 0 Occludin homology domain DUF1948 PF09185.10 gi|305663315|ref|YP_003859603.1| - 0.12 12.2 1.9 0.15 11.9 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1948) ECM1 PF05782.11 gi|305663316|ref|YP_003859604.1| - 0.064 12.2 0.0 0.092 11.7 0.0 1.1 1 0 0 1 1 1 0 Extracellular matrix protein 1 (ECM1) Helicase_RecD PF05127.14 gi|305663316|ref|YP_003859604.1| - 0.11 12.4 1.3 4.6 7.1 1.1 2.3 2 0 0 2 2 2 0 Helicase Glyco_hydro_1 PF00232.18 gi|305663317|ref|YP_003859605.1| - 3.8e-65 220.1 0.0 8.8e-57 192.5 0.0 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|305663317|ref|YP_003859605.1| - 0.11 11.9 0.1 0.18 11.2 0.1 1.2 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_3_C PF01915.22 gi|305663318|ref|YP_003859606.1| - 2.3e-42 145.3 0.0 4e-42 144.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 gi|305663318|ref|YP_003859606.1| - 8.6e-42 143.6 0.0 1.4e-41 142.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.6 gi|305663318|ref|YP_003859606.1| - 2e-22 79.1 0.0 4.2e-22 78.0 0.0 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain Lactamase_B PF00753.27 gi|305663319|ref|YP_003859607.1| - 5.8e-09 36.2 0.1 9.4e-09 35.6 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|305663319|ref|YP_003859607.1| - 0.0009 19.5 0.0 0.0023 18.1 0.0 1.7 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|305663319|ref|YP_003859607.1| - 0.007 16.6 0.1 0.012 15.8 0.1 1.3 1 0 0 1 1 1 1 Flavodoxin domain T4_deiodinase PF00837.17 gi|305663319|ref|YP_003859607.1| - 0.028 13.7 0.0 0.062 12.6 0.0 1.5 1 0 0 1 1 1 0 Iodothyronine deiodinase PLDc_2 PF13091.6 gi|305663319|ref|YP_003859607.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 PLD-like domain TrmB PF01978.19 gi|305663320|ref|YP_003859608.1| - 0.00025 20.9 0.4 0.00045 20.1 0.4 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|305663320|ref|YP_003859608.1| - 0.00032 20.5 0.0 0.00061 19.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|305663320|ref|YP_003859608.1| - 0.0019 18.5 0.6 0.004 17.5 0.6 1.5 1 0 0 1 1 1 1 Penicillinase repressor HxlR PF01638.17 gi|305663320|ref|YP_003859608.1| - 0.0034 17.2 3.2 0.0035 17.2 0.8 2.1 2 1 1 3 3 3 1 HxlR-like helix-turn-helix HTH_8 PF02954.19 gi|305663320|ref|YP_003859608.1| - 0.074 12.9 0.2 0.16 11.8 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Fe_dep_repress PF01325.19 gi|305663320|ref|YP_003859608.1| - 0.078 13.2 0.2 0.6 10.4 0.3 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|305663320|ref|YP_003859608.1| - 0.26 11.1 1.2 9.8 6.1 0.2 3.1 2 1 0 2 2 2 0 Homeodomain-like domain TPR_14 PF13428.6 gi|305663321|ref|YP_003859609.1| - 0.018 15.8 0.1 8.2 7.5 0.1 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat UvsY PF11056.8 gi|305663321|ref|YP_003859609.1| - 0.027 14.8 0.2 0.52 10.7 0.2 2.1 2 0 0 2 2 2 0 Recombination, repair and ssDNA binding protein UvsY Putative_G5P PF17426.2 gi|305663321|ref|YP_003859609.1| - 0.033 14.3 0.0 0.045 13.9 0.0 1.2 1 0 0 1 1 1 0 Putative Gamma DNA binding protein G5P DevR PF01905.16 gi|305663322|ref|YP_003859610.1| - 2.5e-47 161.2 0.0 3.2e-47 160.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 RraB PF06877.11 gi|305663322|ref|YP_003859610.1| - 0.06 14.1 0.0 0.13 13.0 0.0 1.5 1 0 0 1 1 1 0 Regulator of ribonuclease activity B Cas_Cas5d PF09704.10 gi|305663323|ref|YP_003859611.1| - 0.026 14.4 0.0 0.033 14.1 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.29 gi|305663324|ref|YP_003859612.1| - 3.9e-08 33.3 0.0 3.6e-07 30.1 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|305663324|ref|YP_003859612.1| - 0.00012 22.4 0.0 0.00041 20.7 0.0 2.0 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HD_6 PF18019.1 gi|305663325|ref|YP_003859613.1| - 5.5e-05 23.4 0.1 7.5e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 HD domain HD PF01966.22 gi|305663325|ref|YP_003859613.1| - 0.032 14.5 2.3 0.048 13.9 0.4 2.3 3 1 0 3 3 3 0 HD domain CRISPR_Cas6 PF10040.9 gi|305663327|ref|YP_003859615.1| - 1.6e-12 47.9 0.0 2.8e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Cas_Cas4 PF01930.17 gi|305663328|ref|YP_003859616.1| - 1.6e-12 47.8 0.2 3.4e-12 46.8 0.2 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|305663328|ref|YP_003859616.1| - 4.4e-08 33.3 0.6 8.4e-08 32.4 0.1 1.6 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|305663328|ref|YP_003859616.1| - 0.0077 15.6 0.0 0.0094 15.3 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 CRISPR_Cas2 PF09827.9 gi|305663329|ref|YP_003859617.1| - 1.4e-15 57.2 0.1 1.7e-15 57.0 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|305663330|ref|YP_003859618.1| - 2.1e-61 207.6 0.0 4.2e-61 206.6 0.0 1.4 1 1 1 2 2 2 1 CRISPR associated protein Cas1 MerR PF00376.23 gi|305663330|ref|YP_003859618.1| - 0.056 13.2 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein Csa1 PF06023.12 gi|305663331|ref|YP_003859619.1| - 1.6e-62 211.5 0.0 3.7e-44 151.3 0.0 2.0 1 1 0 2 2 2 2 CRISPR-associated exonuclease Csa1 DUF751 PF05421.11 gi|305663333|ref|YP_003859621.1| - 0.0017 19.1 4.0 0.0017 19.1 4.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF751) DUF1097 PF06496.11 gi|305663333|ref|YP_003859621.1| - 0.013 15.6 5.9 0.048 13.8 2.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1097) EamA PF00892.20 gi|305663333|ref|YP_003859621.1| - 0.079 13.1 10.4 0.092 12.9 10.4 1.1 1 0 0 1 1 1 0 EamA-like transporter family DUF2830 PF11125.8 gi|305663333|ref|YP_003859621.1| - 0.11 12.4 1.0 0.24 11.4 1.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2830) LapA_dom PF06305.11 gi|305663333|ref|YP_003859621.1| - 0.58 10.0 10.9 0.12 12.2 2.3 2.2 1 1 1 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF2070 PF09843.9 gi|305663333|ref|YP_003859621.1| - 1.2 7.4 7.2 1.3 7.2 7.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2628 PF10947.8 gi|305663333|ref|YP_003859621.1| - 1.4 9.4 5.1 2 8.9 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) CPP1-like PF11833.8 gi|305663333|ref|YP_003859621.1| - 1.5 8.4 5.1 1.9 8.1 5.1 1.3 1 1 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DXP_synthase_N PF13292.6 gi|305663334|ref|YP_003859622.1| - 0.042 13.0 0.0 0.056 12.6 0.0 1.1 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase MgtE PF01769.16 gi|305663334|ref|YP_003859622.1| - 2.9 8.3 16.9 0.27 11.6 8.7 2.1 1 1 1 2 2 2 0 Divalent cation transporter DUF2070 PF09843.9 gi|305663334|ref|YP_003859622.1| - 7.1 4.8 14.9 8.8 4.5 14.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) PIN PF01850.21 gi|305663335|ref|YP_003859623.1| - 1.1e-09 38.8 0.7 1.7e-09 38.2 0.7 1.2 1 0 0 1 1 1 1 PIN domain LepB_N PF18640.1 gi|305663335|ref|YP_003859623.1| - 0.051 13.2 0.1 0.064 12.9 0.1 1.1 1 0 0 1 1 1 0 LepB N-terminal domain CcdA PF07362.12 gi|305663336|ref|YP_003859624.1| - 4.9e-05 23.7 0.7 6.8e-05 23.2 0.7 1.3 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA STAR_dimer PF16544.5 gi|305663336|ref|YP_003859624.1| - 0.0013 18.2 0.2 0.002 17.7 0.2 1.4 1 0 0 1 1 1 1 Homodimerisation region of STAR domain protein SurA_N_3 PF13624.6 gi|305663336|ref|YP_003859624.1| - 0.045 13.5 0.1 0.046 13.5 0.1 1.1 1 0 0 1 1 1 0 SurA N-terminal domain PSK_trans_fac PF07704.11 gi|305663336|ref|YP_003859624.1| - 0.053 14.3 4.2 0.062 14.1 4.2 1.3 1 1 0 1 1 1 0 Rv0623-like transcription factor GP41 PF00517.17 gi|305663338|ref|YP_003859626.1| - 0.061 13.2 0.9 0.064 13.2 0.9 1.0 1 0 0 1 1 1 0 Retroviral envelope protein OAD_gamma PF04277.13 gi|305663338|ref|YP_003859626.1| - 0.089 13.4 1.9 0.13 12.8 1.9 1.2 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Thiamine_BP PF01910.17 gi|305663339|ref|YP_003859627.1| - 1.7e-25 88.7 0.2 1.9e-25 88.6 0.2 1.0 1 0 0 1 1 1 1 Thiamine-binding protein HGTP_anticodon PF03129.20 gi|305663339|ref|YP_003859627.1| - 0.0031 17.6 0.0 0.037 14.2 0.0 2.1 1 1 1 2 2 2 1 Anticodon binding domain DUF2703 PF10865.8 gi|305663339|ref|YP_003859627.1| - 0.11 12.7 0.2 2.1 8.5 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2703) EzrA PF06160.12 gi|305663340|ref|YP_003859628.1| - 4.4e-07 28.5 12.3 5.9e-05 21.5 1.8 2.9 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.12 gi|305663340|ref|YP_003859628.1| - 1.3e-06 28.6 0.0 0.0011 19.0 0.0 2.8 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Myosin_tail_1 PF01576.19 gi|305663340|ref|YP_003859628.1| - 3e-06 25.4 11.9 4.2e-06 24.9 11.9 1.1 1 0 0 1 1 1 1 Myosin tail IFT57 PF10498.9 gi|305663340|ref|YP_003859628.1| - 5e-06 25.7 6.5 2.9e-05 23.2 6.0 2.1 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 Tropomyosin_1 PF12718.7 gi|305663340|ref|YP_003859628.1| - 5.3e-06 26.6 21.1 2.1e-05 24.7 9.5 2.8 2 1 1 3 3 2 1 Tropomyosin like DUF3584 PF12128.8 gi|305663340|ref|YP_003859628.1| - 1.2e-05 23.2 6.5 1.5e-05 22.8 6.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) RmuC PF02646.16 gi|305663340|ref|YP_003859628.1| - 1.5e-05 24.3 7.0 0.035 13.2 1.5 3.8 1 1 2 3 3 3 2 RmuC family DUF1664 PF07889.12 gi|305663340|ref|YP_003859628.1| - 2.3e-05 24.4 7.3 0.0019 18.2 0.5 3.4 2 1 2 4 4 3 1 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|305663340|ref|YP_003859628.1| - 3.2e-05 24.1 0.1 2.1 8.7 0.0 3.6 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Exonuc_VII_L PF02601.15 gi|305663340|ref|YP_003859628.1| - 5e-05 23.0 6.5 0.0031 17.1 6.5 2.1 1 1 0 1 1 1 1 Exonuclease VII, large subunit Tropomyosin PF00261.20 gi|305663340|ref|YP_003859628.1| - 5e-05 22.8 24.1 0.00014 21.3 24.1 1.7 1 1 0 1 1 1 1 Tropomyosin TMPIT PF07851.13 gi|305663340|ref|YP_003859628.1| - 5.3e-05 22.6 2.5 0.034 13.4 0.3 2.2 1 1 1 2 2 2 2 TMPIT-like protein ABC_tran_CTD PF16326.5 gi|305663340|ref|YP_003859628.1| - 7.6e-05 22.9 18.1 0.0048 17.1 0.2 5.3 3 1 2 5 5 4 1 ABC transporter C-terminal domain FlaC_arch PF05377.11 gi|305663340|ref|YP_003859628.1| - 9e-05 22.8 15.4 0.19 12.1 0.4 5.9 3 2 3 6 6 5 1 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.9 gi|305663340|ref|YP_003859628.1| - 0.00011 22.5 2.7 0.028 14.7 0.2 3.9 2 1 0 4 4 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 XhlA PF10779.9 gi|305663340|ref|YP_003859628.1| - 0.00012 22.2 19.8 0.0083 16.3 0.7 5.0 1 1 4 5 5 5 2 Haemolysin XhlA Occludin_ELL PF07303.13 gi|305663340|ref|YP_003859628.1| - 0.00017 22.3 5.3 0.069 13.9 0.4 3.4 1 1 2 3 3 3 1 Occludin homology domain Spc7 PF08317.11 gi|305663340|ref|YP_003859628.1| - 0.00027 19.9 12.8 0.0034 16.3 5.9 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF16 PF01519.16 gi|305663340|ref|YP_003859628.1| - 0.00052 20.5 12.1 0.0085 16.6 4.9 3.7 2 1 2 4 4 3 1 Protein of unknown function DUF16 Laminin_II PF06009.12 gi|305663340|ref|YP_003859628.1| - 0.00056 19.9 6.3 0.067 13.2 0.2 3.2 2 1 3 5 5 4 2 Laminin Domain II DUF4164 PF13747.6 gi|305663340|ref|YP_003859628.1| - 0.0013 19.0 8.3 0.0013 19.0 8.3 3.8 1 1 1 2 2 1 1 Domain of unknown function (DUF4164) Sec3_C PF09763.9 gi|305663340|ref|YP_003859628.1| - 0.0018 16.8 4.2 0.041 12.3 0.2 2.6 2 1 1 3 3 3 2 Exocyst complex component Sec3 NPV_P10 PF05531.12 gi|305663340|ref|YP_003859628.1| - 0.0018 18.7 0.3 0.63 10.5 0.2 3.4 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein FapA PF03961.13 gi|305663340|ref|YP_003859628.1| - 0.002 16.8 8.3 0.16 10.6 1.2 2.4 1 1 1 2 2 2 2 Flagellar Assembly Protein A Syntaxin PF00804.25 gi|305663340|ref|YP_003859628.1| - 0.0023 17.6 10.2 0.089 12.5 4.9 2.6 1 1 1 2 2 2 2 Syntaxin AAA_13 PF13166.6 gi|305663340|ref|YP_003859628.1| - 0.0024 16.6 8.2 0.0037 16.0 8.2 1.2 1 0 0 1 1 1 1 AAA domain MscS_porin PF12795.7 gi|305663340|ref|YP_003859628.1| - 0.0027 17.3 0.1 0.015 14.8 0.1 2.1 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain COG2 PF06148.11 gi|305663340|ref|YP_003859628.1| - 0.0029 17.7 8.8 2.6 8.1 0.5 3.6 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.10 gi|305663340|ref|YP_003859628.1| - 0.0031 17.7 4.1 0.023 14.9 1.2 3.0 2 1 1 3 3 2 1 Fibrinogen alpha/beta chain family FPP PF05911.11 gi|305663340|ref|YP_003859628.1| - 0.0038 15.5 6.0 0.17 10.0 1.1 1.9 1 1 1 2 2 2 2 Filament-like plant protein, long coiled-coil TelA PF05816.11 gi|305663340|ref|YP_003859628.1| - 0.0039 16.3 5.2 0.28 10.2 0.9 2.3 1 1 1 2 2 2 2 Toxic anion resistance protein (TelA) Sec34 PF04136.15 gi|305663340|ref|YP_003859628.1| - 0.0045 16.9 0.9 0.85 9.5 0.2 2.9 1 1 2 3 3 3 1 Sec34-like family Laminin_I PF06008.14 gi|305663340|ref|YP_003859628.1| - 0.0058 16.4 5.4 0.0058 16.4 5.4 2.3 1 1 1 2 2 2 1 Laminin Domain I TACC_C PF05010.14 gi|305663340|ref|YP_003859628.1| - 0.0061 16.4 10.9 0.019 14.8 10.9 1.9 1 1 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Nup54 PF13874.6 gi|305663340|ref|YP_003859628.1| - 0.0072 16.4 8.7 0.017 15.2 1.3 3.1 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 Nup88 PF10168.9 gi|305663340|ref|YP_003859628.1| - 0.008 14.1 10.6 0.011 13.6 10.6 1.1 1 0 0 1 1 1 1 Nuclear pore component Golgin_A5 PF09787.9 gi|305663340|ref|YP_003859628.1| - 0.0081 15.7 4.9 0.0081 15.7 4.9 2.3 2 1 0 3 3 2 1 Golgin subfamily A member 5 THOC7 PF05615.13 gi|305663340|ref|YP_003859628.1| - 0.0089 16.3 14.8 0.057 13.7 0.2 2.6 1 1 1 2 2 2 1 Tho complex subunit 7 ADIP PF11559.8 gi|305663340|ref|YP_003859628.1| - 0.0093 16.1 13.7 0.038 14.1 0.7 3.9 3 2 0 4 4 3 1 Afadin- and alpha -actinin-Binding DUF4455 PF14643.6 gi|305663340|ref|YP_003859628.1| - 0.0094 14.6 16.7 0.019 13.6 7.9 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4455) DUF2333 PF10095.9 gi|305663340|ref|YP_003859628.1| - 0.01 14.9 1.0 0.02 13.9 0.8 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2333) DUF3226 PF11536.8 gi|305663340|ref|YP_003859628.1| - 0.011 15.5 2.4 0.16 11.6 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3226) Sugarporin_N PF11471.8 gi|305663340|ref|YP_003859628.1| - 0.011 15.6 3.0 0.27 11.2 1.1 2.8 1 1 1 2 2 2 0 Maltoporin periplasmic N-terminal extension Snapin_Pallidin PF14712.6 gi|305663340|ref|YP_003859628.1| - 0.012 16.0 9.2 1.1 9.7 0.4 4.1 2 1 2 4 4 3 0 Snapin/Pallidin Allexi_40kDa PF05549.11 gi|305663340|ref|YP_003859628.1| - 0.013 15.1 1.4 0.15 11.5 0.1 2.4 1 1 1 2 2 2 0 Allexivirus 40kDa protein Phage_GPO PF05929.11 gi|305663340|ref|YP_003859628.1| - 0.013 15.2 1.3 0.053 13.1 0.7 2.0 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase TRPM_tetra PF16519.5 gi|305663340|ref|YP_003859628.1| - 0.014 15.5 9.8 0.73 10.0 0.3 3.6 1 1 2 3 3 3 0 Tetramerisation domain of TRPM MtrG PF04210.13 gi|305663340|ref|YP_003859628.1| - 0.018 14.9 12.2 14 5.7 0.3 5.6 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G KxDL PF10241.9 gi|305663340|ref|YP_003859628.1| - 0.02 15.2 11.3 0.41 11.0 0.5 4.6 2 1 2 5 5 5 0 Uncharacterized conserved protein OmpH PF03938.14 gi|305663340|ref|YP_003859628.1| - 0.02 15.2 5.6 0.17 12.2 2.1 2.7 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF3450 PF11932.8 gi|305663340|ref|YP_003859628.1| - 0.021 14.1 0.5 0.021 14.1 0.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) WXG100 PF06013.12 gi|305663340|ref|YP_003859628.1| - 0.023 14.9 0.4 3.2 8.0 0.0 3.7 2 1 0 3 3 3 0 Proteins of 100 residues with WXG V-SNARE_C PF12352.8 gi|305663340|ref|YP_003859628.1| - 0.031 14.5 0.9 23 5.3 0.0 3.9 2 1 3 5 5 4 0 Snare region anchored in the vesicle membrane C-terminus HBM PF16591.5 gi|305663340|ref|YP_003859628.1| - 0.031 13.7 2.9 0.56 9.6 0.1 2.7 1 1 2 3 3 3 0 Helical bimodular sensor domain COG6 PF06419.11 gi|305663340|ref|YP_003859628.1| - 0.035 12.3 5.1 0.48 8.6 0.8 2.8 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 DUF3782 PF12644.7 gi|305663340|ref|YP_003859628.1| - 0.035 14.2 15.5 2 8.6 0.2 5.1 1 1 3 4 4 4 0 Protein of unknown function (DUF3782) DUF4709 PF15821.5 gi|305663340|ref|YP_003859628.1| - 0.043 14.1 4.8 0.8 10.0 2.0 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4709) CALCOCO1 PF07888.11 gi|305663340|ref|YP_003859628.1| - 0.064 12.1 16.5 0.1 11.4 16.5 1.3 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like SlyX PF04102.12 gi|305663340|ref|YP_003859628.1| - 0.065 13.9 11.9 1 10.0 0.3 4.9 2 1 1 4 4 3 0 SlyX Spectrin PF00435.21 gi|305663340|ref|YP_003859628.1| - 0.067 13.7 7.7 2.4 8.7 4.1 3.8 1 1 2 3 3 3 0 Spectrin repeat DUF4407 PF14362.6 gi|305663340|ref|YP_003859628.1| - 0.07 12.5 1.5 0.17 11.2 1.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) TPR_MLP1_2 PF07926.12 gi|305663340|ref|YP_003859628.1| - 0.078 13.0 10.3 0.033 14.3 1.9 3.0 2 1 1 3 3 2 0 TPR/MLP1/MLP2-like protein Prefoldin_2 PF01920.20 gi|305663340|ref|YP_003859628.1| - 0.091 12.7 13.4 3.3 7.7 0.3 5.0 2 1 3 5 5 5 0 Prefoldin subunit DUF2993 PF11209.8 gi|305663340|ref|YP_003859628.1| - 0.094 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2993) DUF4795 PF16043.5 gi|305663340|ref|YP_003859628.1| - 0.11 12.1 19.4 1.4 8.5 2.6 3.5 2 1 1 3 3 2 0 Domain of unknown function (DUF4795) Lectin_N PF03954.14 gi|305663340|ref|YP_003859628.1| - 0.12 12.2 0.2 1.3 8.8 0.1 2.8 3 1 0 3 3 2 0 Hepatic lectin, N-terminal domain FH2 PF02181.23 gi|305663340|ref|YP_003859628.1| - 0.12 11.5 5.9 1.3 8.1 1.1 2.3 1 1 1 2 2 2 0 Formin Homology 2 Domain DegS PF05384.11 gi|305663340|ref|YP_003859628.1| - 0.15 11.6 18.0 0.17 11.4 15.5 2.1 1 1 1 2 2 2 0 Sensor protein DegS Corona_S2 PF01601.16 gi|305663340|ref|YP_003859628.1| - 0.16 10.5 0.0 0.22 10.0 0.0 1.3 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein DHR10 PF18595.1 gi|305663340|ref|YP_003859628.1| - 0.16 12.0 20.3 0.12 12.4 3.1 3.6 2 1 2 4 4 3 0 Designed helical repeat protein 10 domain Med3 PF11593.8 gi|305663340|ref|YP_003859628.1| - 0.18 10.9 1.9 0.25 10.5 1.4 1.4 1 1 0 1 1 1 0 Mediator complex subunit 3 fungal DUF4201 PF13870.6 gi|305663340|ref|YP_003859628.1| - 0.18 11.5 14.4 0.47 10.2 1.1 3.1 2 1 2 4 4 3 0 Domain of unknown function (DUF4201) DLP_helical PF18709.1 gi|305663340|ref|YP_003859628.1| - 0.19 10.9 13.0 0.26 10.5 2.5 3.1 1 1 2 4 4 4 0 Dynamin-like helical domain CLZ PF16526.5 gi|305663340|ref|YP_003859628.1| - 0.25 11.7 19.1 0.19 12.1 2.0 5.1 3 1 1 5 5 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels TolA_bind_tri PF16331.5 gi|305663340|ref|YP_003859628.1| - 0.25 11.4 12.1 7.1 6.8 1.3 3.6 2 1 1 3 3 3 0 TolA binding protein trimerisation HIP1_clath_bdg PF16515.5 gi|305663340|ref|YP_003859628.1| - 0.28 11.8 7.5 0.35 11.5 1.5 2.8 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 V_ATPase_I PF01496.19 gi|305663340|ref|YP_003859628.1| - 0.32 8.8 11.6 0.14 10.1 4.4 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family CREPT PF16566.5 gi|305663340|ref|YP_003859628.1| - 0.39 10.9 4.5 3.9 7.6 0.9 2.8 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour GrpE PF01025.19 gi|305663340|ref|YP_003859628.1| - 0.39 10.4 15.6 1.4 8.6 4.9 3.7 2 1 2 4 4 3 0 GrpE SKA2 PF16740.5 gi|305663340|ref|YP_003859628.1| - 0.4 10.5 10.4 10 6.0 0.6 4.3 2 1 3 5 5 4 0 Spindle and kinetochore-associated protein 2 Spc24 PF08286.11 gi|305663340|ref|YP_003859628.1| - 0.45 10.8 12.9 1.3 9.3 2.0 3.8 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 Tektin PF03148.14 gi|305663340|ref|YP_003859628.1| - 0.49 9.1 16.4 0.21 10.3 8.2 2.5 1 1 1 2 2 2 0 Tektin family Lipoprotein_7 PF01540.16 gi|305663340|ref|YP_003859628.1| - 0.53 9.5 9.9 4.8 6.4 8.5 2.4 1 1 1 2 2 2 0 Adhesin lipoprotein DUF2802 PF10975.8 gi|305663340|ref|YP_003859628.1| - 0.55 10.4 7.2 9.6 6.4 0.7 5.0 2 2 1 3 3 2 0 Protein of unknown function (DUF2802) UPF0184 PF03670.13 gi|305663340|ref|YP_003859628.1| - 0.59 10.6 8.2 1.5 9.2 1.5 4.0 2 1 2 4 4 2 0 Uncharacterised protein family (UPF0184) UPF0242 PF06785.11 gi|305663340|ref|YP_003859628.1| - 0.64 10.1 15.7 4.6 7.3 7.5 3.0 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Hemagglutinin PF00509.18 gi|305663340|ref|YP_003859628.1| - 0.67 8.3 9.5 2.4 6.5 0.8 3.1 1 1 2 3 3 3 0 Haemagglutinin Nsp1_C PF05064.13 gi|305663340|ref|YP_003859628.1| - 0.68 9.8 6.7 0.21 11.4 0.4 2.9 2 1 3 5 5 3 0 Nsp1-like C-terminal region DUF3552 PF12072.8 gi|305663340|ref|YP_003859628.1| - 0.72 9.2 24.2 0.078 12.4 8.3 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) CCDC53 PF10152.9 gi|305663340|ref|YP_003859628.1| - 0.76 10.2 5.5 1.1 9.7 0.7 2.9 2 1 1 3 3 2 0 Subunit CCDC53 of WASH complex DASH_Dam1 PF08653.10 gi|305663340|ref|YP_003859628.1| - 0.77 9.6 3.9 59 3.6 0.2 4.2 2 1 2 4 4 4 0 DASH complex subunit Dam1 APG6_N PF17675.1 gi|305663340|ref|YP_003859628.1| - 0.88 10.1 17.3 4.4e+03 -1.9 17.3 2.9 1 1 0 1 1 0 0 Apg6 coiled-coil region HMMR_N PF15905.5 gi|305663340|ref|YP_003859628.1| - 0.98 8.8 13.4 1.9 7.9 3.4 2.8 2 1 1 3 3 2 0 Hyaluronan mediated motility receptor N-terminal Prefoldin PF02996.17 gi|305663340|ref|YP_003859628.1| - 1 9.3 11.0 2.5 8.0 0.2 4.9 2 1 4 7 7 5 0 Prefoldin subunit PRKG1_interact PF15898.5 gi|305663340|ref|YP_003859628.1| - 1.3 9.9 15.4 8.8 7.3 4.3 3.0 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain Fmp27_WPPW PF10359.9 gi|305663340|ref|YP_003859628.1| - 1.4 7.7 10.1 0.77 8.5 4.0 2.4 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain YkyA PF10368.9 gi|305663340|ref|YP_003859628.1| - 1.5 8.4 10.2 0.94 9.1 5.3 2.3 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein Atg14 PF10186.9 gi|305663340|ref|YP_003859628.1| - 1.7 7.7 9.4 0.66 9.0 1.6 2.3 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Jnk-SapK_ap_N PF09744.9 gi|305663340|ref|YP_003859628.1| - 1.7 8.9 17.2 0.71 10.1 9.3 3.4 2 1 1 3 3 2 0 JNK_SAPK-associated protein-1 DUF724 PF05266.14 gi|305663340|ref|YP_003859628.1| - 1.9 8.3 14.0 4.8 7.0 0.7 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Vac_Fusion PF02346.16 gi|305663340|ref|YP_003859628.1| - 1.9 8.2 20.3 3.8 7.2 0.2 5.4 2 2 3 5 5 5 0 Chordopoxvirus multifunctional envelope protein A27 Taxilin PF09728.9 gi|305663340|ref|YP_003859628.1| - 2.1 7.5 12.4 12 4.9 12.2 2.1 1 1 0 1 1 1 0 Myosin-like coiled-coil protein DUF812 PF05667.11 gi|305663340|ref|YP_003859628.1| - 2.1 7.1 12.4 43 2.8 7.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF812) CENP-H PF05837.12 gi|305663340|ref|YP_003859628.1| - 2.7 8.5 9.5 3.1 8.3 0.3 3.3 1 1 1 2 2 2 0 Centromere protein H (CENP-H) SOAR PF16533.5 gi|305663340|ref|YP_003859628.1| - 2.7 8.0 11.3 3.1 7.8 2.9 3.5 1 1 3 4 4 3 0 STIM1 Orai1-activating region DUF4472 PF14739.6 gi|305663340|ref|YP_003859628.1| - 2.8 8.7 7.1 3.8 8.3 1.1 2.9 1 1 2 3 3 2 0 Domain of unknown function (DUF4472) HrpB7 PF09486.10 gi|305663340|ref|YP_003859628.1| - 3 8.2 16.7 2.8 8.3 11.5 3.1 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) FUSC PF04632.12 gi|305663340|ref|YP_003859628.1| - 3.1 6.2 4.8 3.4 6.1 2.3 1.6 1 1 0 1 1 1 0 Fusaric acid resistance protein family DUF4375 PF14300.6 gi|305663340|ref|YP_003859628.1| - 3.1 8.1 8.9 16 5.8 3.6 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4375) YabA PF06156.13 gi|305663340|ref|YP_003859628.1| - 3.9 8.2 13.8 45 4.8 0.9 4.4 2 1 1 3 3 2 0 Initiation control protein YabA Synaptonemal_3 PF15191.6 gi|305663340|ref|YP_003859628.1| - 4.5 7.1 7.3 37 4.2 0.1 3.9 1 1 1 3 3 3 0 Synaptonemal complex central element protein 3 Helo_like_N PF17111.5 gi|305663340|ref|YP_003859628.1| - 4.6 6.6 7.4 1.2e+02 1.9 3.1 4.0 1 1 2 3 3 3 0 Fungal N-terminal domain of STAND proteins Rootletin PF15035.6 gi|305663340|ref|YP_003859628.1| - 6.4 6.8 14.4 4.8 7.1 3.7 2.8 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF4200 PF13863.6 gi|305663340|ref|YP_003859628.1| - 7.2 7.0 24.5 1.4 9.3 13.7 3.3 2 1 1 3 3 2 0 Domain of unknown function (DUF4200) CENP-F_leu_zip PF10473.9 gi|305663340|ref|YP_003859628.1| - 7.5 6.6 21.4 1 9.4 6.7 2.7 2 1 1 3 3 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Syntaxin-6_N PF09177.11 gi|305663340|ref|YP_003859628.1| - 8.6 7.0 11.4 91 3.7 0.5 3.4 2 1 2 4 4 2 0 Syntaxin 6, N-terminal zf-C4H2 PF10146.9 gi|305663340|ref|YP_003859628.1| - 9.7 6.4 11.2 24 5.1 8.8 2.6 1 1 0 1 1 1 0 Zinc finger-containing protein DUF2207 PF09972.9 gi|305663341|ref|YP_003859629.1| - 0.0092 14.8 0.9 0.0092 14.8 0.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) Oxidored_q2 PF00420.24 gi|305663341|ref|YP_003859629.1| - 0.0094 15.6 0.8 0.01 15.5 0.8 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4293 PF14126.6 gi|305663341|ref|YP_003859629.1| - 0.0094 16.2 1.1 0.0098 16.1 1.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4293) DUF4381 PF14316.6 gi|305663341|ref|YP_003859629.1| - 0.016 15.4 0.4 0.019 15.2 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Rax2 PF12768.7 gi|305663341|ref|YP_003859629.1| - 0.037 13.5 0.1 0.045 13.2 0.1 1.2 1 0 0 1 1 1 0 Cortical protein marker for cell polarity BatD PF13584.6 gi|305663341|ref|YP_003859629.1| - 0.037 12.8 0.1 0.037 12.8 0.1 1.0 1 0 0 1 1 1 0 Oxygen tolerance LapA_dom PF06305.11 gi|305663341|ref|YP_003859629.1| - 0.047 13.5 0.2 0.052 13.4 0.2 1.2 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain PMT_4TMC PF16192.5 gi|305663341|ref|YP_003859629.1| - 0.056 13.0 0.1 0.057 13.0 0.1 1.1 1 0 0 1 1 1 0 C-terminal four TMM region of protein-O-mannosyltransferase Trp_oprn_chp PF09534.10 gi|305663341|ref|YP_003859629.1| - 0.064 13.0 0.0 0.065 13.0 0.0 1.0 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Stevor PF17410.2 gi|305663341|ref|YP_003859629.1| - 0.12 12.0 2.5 0.11 12.0 2.5 1.1 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame EphA2_TM PF14575.6 gi|305663341|ref|YP_003859629.1| - 0.17 12.8 0.2 0.23 12.4 0.2 1.2 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain DUF347 PF03988.12 gi|305663341|ref|YP_003859629.1| - 0.2 11.9 4.5 0.38 11.0 4.5 1.8 1 1 0 1 1 1 0 Repeat of Unknown Function (DUF347) RCR PF12273.8 gi|305663341|ref|YP_003859629.1| - 0.72 10.5 1.8 0.93 10.2 1.8 1.1 1 0 0 1 1 1 0 Chitin synthesis regulation, resistance to Congo red RIFIN PF02009.16 gi|305663341|ref|YP_003859629.1| - 1.5 8.7 4.3 1.5 8.7 4.3 1.1 1 0 0 1 1 1 0 Rifin NAD_synthase PF02540.17 gi|305663343|ref|YP_003859631.1| - 8.5e-72 241.2 0.0 1e-71 240.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|305663343|ref|YP_003859631.1| - 1.6e-05 23.9 0.0 0.05 12.4 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|305663343|ref|YP_003859631.1| - 0.067 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|305663343|ref|YP_003859631.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.19 gi|305663343|ref|YP_003859631.1| - 0.21 11.6 0.0 0.53 10.3 0.0 1.7 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family HMGL-like PF00682.19 gi|305663344|ref|YP_003859632.1| - 3.6e-42 144.8 0.0 4.6e-42 144.4 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Gln-synt_C PF00120.24 gi|305663345|ref|YP_003859633.1| - 4.8e-123 410.5 0.0 5.6e-123 410.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|305663345|ref|YP_003859633.1| - 2.6e-20 71.9 0.0 5e-20 71.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Glu_synthase PF01645.17 gi|305663346|ref|YP_003859634.1| - 2.7e-12 46.5 0.5 1.1e-09 37.9 0.1 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase Aminotran_1_2 PF00155.21 gi|305663347|ref|YP_003859635.1| - 6.8e-48 163.7 0.0 7.7e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|305663347|ref|YP_003859635.1| - 2.8e-07 29.8 0.0 4.8e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_MocR PF12897.7 gi|305663347|ref|YP_003859635.1| - 4.5e-07 29.0 0.0 2.9e-06 26.4 0.0 1.9 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 gi|305663347|ref|YP_003859635.1| - 0.0008 18.8 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|305663347|ref|YP_003859635.1| - 0.0034 16.0 0.0 0.0052 15.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Glyco_transf_21 PF13506.6 gi|305663347|ref|YP_003859635.1| - 0.18 11.3 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_hydro_1 PF00232.18 gi|305663348|ref|YP_003859636.1| - 1.3e-65 221.6 0.5 1.8e-54 184.9 0.0 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Glyco_hydro_3 PF00933.21 gi|305663349|ref|YP_003859637.1| - 5.8e-76 255.9 0.0 8.6e-76 255.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|305663349|ref|YP_003859637.1| - 8.7e-58 195.6 0.0 1.6e-57 194.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|305663349|ref|YP_003859637.1| - 7.1e-23 80.5 0.0 1.6e-22 79.4 0.0 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain CARDB PF07705.11 gi|305663349|ref|YP_003859637.1| - 0.019 15.2 0.0 0.037 14.3 0.0 1.4 1 0 0 1 1 1 0 CARDB HEPN PF05168.14 gi|305663349|ref|YP_003859637.1| - 0.042 14.0 0.0 0.097 12.8 0.0 1.6 1 0 0 1 1 1 0 HEPN domain T2SSE_N PF05157.15 gi|305663349|ref|YP_003859637.1| - 0.083 13.2 0.0 0.74 10.1 0.0 2.3 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein E, N-terminal domain AP_endonuc_2 PF01261.24 gi|305663350|ref|YP_003859638.1| - 1.1e-20 74.0 0.0 3.2e-20 72.5 0.1 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF4862 PF16154.5 gi|305663350|ref|YP_003859638.1| - 0.022 14.2 0.0 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4862) Polysacc_deac_1 PF01522.21 gi|305663351|ref|YP_003859639.1| - 1.8e-20 73.1 0.0 3.4e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Aldo_ket_red PF00248.21 gi|305663351|ref|YP_003859639.1| - 0.065 12.4 0.1 0.5 9.5 0.0 2.0 2 0 0 2 2 2 0 Aldo/keto reductase family DUF5503 PF17607.2 gi|305663351|ref|YP_003859639.1| - 0.14 12.5 0.7 0.42 10.9 0.3 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5503) Lipase_GDSL_2 PF13472.6 gi|305663352|ref|YP_003859640.1| - 1.7e-23 84.0 0.0 1.9e-23 83.8 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|305663352|ref|YP_003859640.1| - 4.1e-09 36.7 0.0 5.2e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Amidohydro_3 PF07969.11 gi|305663353|ref|YP_003859641.1| - 7.9e-109 365.2 0.0 9.8e-109 364.9 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|305663353|ref|YP_003859641.1| - 2.7e-17 63.1 0.0 1.2e-11 44.5 0.0 3.4 2 1 0 2 2 2 2 Amidohydrolase family UxaC PF02614.14 gi|305663354|ref|YP_003859642.1| - 0.0037 16.2 0.0 1.6 7.5 0.0 2.3 2 0 0 2 2 2 2 Glucuronate isomerase DUF4234 PF14018.6 gi|305663355|ref|YP_003859643.1| - 8.8e-13 48.2 13.7 8.4e-10 38.6 0.1 3.8 3 1 0 3 3 3 1 Domain of unknown function (DUF4234) SNARE_assoc PF09335.11 gi|305663355|ref|YP_003859643.1| - 7.5e-05 23.2 5.9 0.16 12.5 2.1 2.9 2 1 1 3 3 3 2 SNARE associated Golgi protein DUF5534 PF17686.1 gi|305663355|ref|YP_003859643.1| - 0.00017 21.9 0.3 0.0011 19.3 0.1 2.0 2 0 0 2 2 2 1 Family of unknown function (DUF5534) Phage_holin_3_6 PF07332.11 gi|305663355|ref|YP_003859643.1| - 0.0018 18.3 2.0 0.02 14.9 0.8 2.6 3 0 0 3 3 3 1 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|305663355|ref|YP_003859643.1| - 0.0051 15.6 10.4 0.038 12.8 3.8 2.1 1 1 1 2 2 2 2 Predicted membrane protein (DUF2207) RseC_MucC PF04246.12 gi|305663355|ref|YP_003859643.1| - 0.0076 16.2 4.7 2.3 8.2 2.8 2.9 3 0 0 3 3 3 2 Positive regulator of sigma(E), RseC/MucC Vpu PF00558.19 gi|305663355|ref|YP_003859643.1| - 0.0081 15.9 1.0 3.3 7.5 0.0 3.1 3 0 0 3 3 3 1 Vpu protein Oxidored_q3 PF00499.20 gi|305663355|ref|YP_003859643.1| - 0.03 14.1 9.6 0.26 11.0 6.9 2.4 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TEX29 PF15839.5 gi|305663355|ref|YP_003859643.1| - 0.038 14.6 0.5 1.1 10.0 0.3 2.6 2 0 0 2 2 2 0 Testis-expressed sequence 29 protein Halogen_Hydrol PF10112.9 gi|305663355|ref|YP_003859643.1| - 0.16 12.0 2.1 0.5 10.4 0.1 2.4 3 0 0 3 3 3 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF5305 PF17231.2 gi|305663355|ref|YP_003859643.1| - 0.24 10.8 2.3 7.9 5.8 0.0 3.0 2 1 1 3 3 3 0 Family of unknown function (DUF5305) DUF3810 PF12725.7 gi|305663355|ref|YP_003859643.1| - 0.98 8.7 4.9 0.44 9.8 1.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) Sre PF03125.18 gi|305663355|ref|YP_003859643.1| - 1.2 8.3 8.3 0.38 9.8 3.0 2.2 2 1 0 2 2 2 0 C. elegans Sre G protein-coupled chemoreceptor UPF0154 PF03672.13 gi|305663355|ref|YP_003859643.1| - 4.9 7.3 7.7 17 5.5 1.1 3.2 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0154) DUF1189 PF06691.11 gi|305663355|ref|YP_003859643.1| - 7.9 6.0 13.1 2.5 7.6 0.0 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF1189) DUF3784 PF12650.7 gi|305663355|ref|YP_003859643.1| - 8.2 6.7 14.7 0.23 11.6 1.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) MgtE PF01769.16 gi|305663356|ref|YP_003859644.1| - 1e-23 84.0 7.8 1e-23 84.0 7.8 1.8 2 0 0 2 2 2 1 Divalent cation transporter CBS PF00571.28 gi|305663356|ref|YP_003859644.1| - 1.2e-15 57.6 0.7 1.1e-06 29.0 0.3 3.0 2 0 0 2 2 2 2 CBS domain MgtE_N PF03448.17 gi|305663356|ref|YP_003859644.1| - 1.3e-12 48.2 0.3 8.2e-12 45.6 0.1 2.2 1 1 1 2 2 2 2 MgtE intracellular N domain GW PF13457.6 gi|305663356|ref|YP_003859644.1| - 0.022 15.3 0.4 0.039 14.6 0.4 1.3 1 0 0 1 1 1 0 GW (Gly-Tryp) dipeptide domain ABC_membrane PF00664.23 gi|305663357|ref|YP_003859645.1| - 2.3e-47 161.9 22.4 3.3e-47 161.4 22.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|305663357|ref|YP_003859645.1| - 1.8e-35 122.4 0.0 2.9e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|305663357|ref|YP_003859645.1| - 5.1e-06 27.0 0.0 9.4e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|305663357|ref|YP_003859645.1| - 8e-06 25.4 0.0 0.0035 16.8 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|305663357|ref|YP_003859645.1| - 0.00025 21.0 0.0 0.00046 20.1 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|305663357|ref|YP_003859645.1| - 0.0011 19.2 0.1 0.0067 16.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|305663357|ref|YP_003859645.1| - 0.01 15.7 0.3 1.6 8.5 0.2 2.3 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system IstB_IS21 PF01695.17 gi|305663357|ref|YP_003859645.1| - 0.02 14.6 0.1 0.62 9.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|305663357|ref|YP_003859645.1| - 0.021 14.9 0.0 0.068 13.3 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|305663357|ref|YP_003859645.1| - 0.021 14.5 0.1 0.13 12.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|305663357|ref|YP_003859645.1| - 0.037 13.5 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|305663357|ref|YP_003859645.1| - 0.044 12.8 0.1 0.12 11.4 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein RuvA_C PF07499.13 gi|305663357|ref|YP_003859645.1| - 0.05 14.1 0.6 0.19 12.2 0.1 2.2 3 0 0 3 3 2 0 RuvA, C-terminal domain Zeta_toxin PF06414.12 gi|305663357|ref|YP_003859645.1| - 0.052 12.8 0.0 0.22 10.8 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_35 PF14516.6 gi|305663357|ref|YP_003859645.1| - 0.055 12.3 0.1 0.13 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_24 PF13479.6 gi|305663357|ref|YP_003859645.1| - 0.058 13.1 0.1 0.42 10.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|305663357|ref|YP_003859645.1| - 0.062 13.0 0.0 0.19 11.5 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.19 gi|305663357|ref|YP_003859645.1| - 0.094 12.3 0.1 0.26 10.9 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.7 gi|305663357|ref|YP_003859645.1| - 0.11 11.4 0.0 0.23 10.4 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain SbcCD_C PF13558.6 gi|305663357|ref|YP_003859645.1| - 0.11 12.7 0.1 0.47 10.7 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|305663357|ref|YP_003859645.1| - 0.13 12.7 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|305663357|ref|YP_003859645.1| - 0.15 12.4 0.0 0.37 11.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|305663357|ref|YP_003859645.1| - 0.15 11.6 0.1 1.1 8.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|305663357|ref|YP_003859645.1| - 0.25 11.8 2.4 2.4 8.6 0.8 2.9 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) ABC_membrane PF00664.23 gi|305663358|ref|YP_003859646.1| - 7.3e-42 143.9 28.8 9.2e-42 143.6 28.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|305663358|ref|YP_003859646.1| - 8.1e-39 133.3 0.0 1.6e-38 132.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_24 PF13479.6 gi|305663358|ref|YP_003859646.1| - 1.3e-05 25.1 0.0 2.3e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|305663358|ref|YP_003859646.1| - 1.4e-05 25.1 0.3 0.021 14.6 0.1 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|305663358|ref|YP_003859646.1| - 0.00049 20.4 0.0 0.0016 18.7 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|305663358|ref|YP_003859646.1| - 0.00061 20.2 0.0 0.0013 19.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|305663358|ref|YP_003859646.1| - 0.00072 19.1 0.0 0.63 9.4 0.0 2.3 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|305663358|ref|YP_003859646.1| - 0.00085 19.9 0.0 0.0028 18.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|305663358|ref|YP_003859646.1| - 0.0014 18.6 0.1 0.0038 17.3 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|305663358|ref|YP_003859646.1| - 0.0018 18.0 0.0 0.0045 16.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|305663358|ref|YP_003859646.1| - 0.002 18.5 0.0 0.018 15.4 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|305663358|ref|YP_003859646.1| - 0.002 17.9 0.1 0.0032 17.2 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|305663358|ref|YP_003859646.1| - 0.0054 17.0 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|305663358|ref|YP_003859646.1| - 0.0054 16.7 0.0 0.065 13.1 0.0 2.3 2 0 0 2 2 2 1 NTPase ATPase_2 PF01637.18 gi|305663358|ref|YP_003859646.1| - 0.015 15.2 0.0 0.035 14.0 0.0 1.6 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|305663358|ref|YP_003859646.1| - 0.018 15.2 0.0 0.039 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|305663358|ref|YP_003859646.1| - 0.019 15.0 0.0 0.052 13.6 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|305663358|ref|YP_003859646.1| - 0.021 14.6 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|305663358|ref|YP_003859646.1| - 0.022 14.0 0.0 0.046 13.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Roc PF08477.13 gi|305663358|ref|YP_003859646.1| - 0.024 14.8 0.0 0.05 13.8 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase RuvB_N PF05496.12 gi|305663358|ref|YP_003859646.1| - 0.032 14.0 0.3 0.44 10.3 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|305663358|ref|YP_003859646.1| - 0.035 14.1 0.0 0.096 12.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|305663358|ref|YP_003859646.1| - 0.037 13.1 0.0 0.067 12.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|305663358|ref|YP_003859646.1| - 0.058 13.3 0.0 0.27 11.1 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase DUF3915 PF13054.6 gi|305663358|ref|YP_003859646.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3915) Rad17 PF03215.15 gi|305663358|ref|YP_003859646.1| - 0.082 12.8 0.0 0.19 11.6 0.0 1.7 1 1 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 gi|305663358|ref|YP_003859646.1| - 0.087 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|305663358|ref|YP_003859646.1| - 0.098 13.0 0.0 0.32 11.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|305663358|ref|YP_003859646.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|305663358|ref|YP_003859646.1| - 0.17 11.5 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|305663358|ref|YP_003859646.1| - 0.19 11.1 0.0 0.36 10.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SLATT_1 PF18181.1 gi|305663358|ref|YP_003859646.1| - 0.22 11.5 1.3 3 7.8 0.1 2.7 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 Viral_helicase1 PF01443.18 gi|305663358|ref|YP_003859646.1| - 0.23 11.2 0.0 0.36 10.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Stevor PF17410.2 gi|305663359|ref|YP_003859647.1| - 2.4 7.6 8.1 4.4 6.8 8.1 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame SAP130_C PF16014.5 gi|305663359|ref|YP_003859647.1| - 5 6.1 9.4 7.1 5.6 9.4 1.1 1 0 0 1 1 1 0 Histone deacetylase complex subunit SAP130 C-terminus ABC_tran PF00005.27 gi|305663360|ref|YP_003859648.1| - 2.8e-24 86.2 0.0 4.1e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663360|ref|YP_003859648.1| - 2e-17 63.9 0.1 1.9e-09 37.8 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663360|ref|YP_003859648.1| - 2.2e-05 24.0 0.1 0.044 13.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|305663360|ref|YP_003859648.1| - 0.0005 19.9 0.0 0.0082 15.9 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|305663360|ref|YP_003859648.1| - 0.00059 20.4 0.8 0.0011 19.5 0.3 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|305663360|ref|YP_003859648.1| - 0.0029 17.3 0.1 0.0049 16.6 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|305663360|ref|YP_003859648.1| - 0.0034 17.0 0.0 0.0054 16.4 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|305663360|ref|YP_003859648.1| - 0.0066 16.7 0.0 0.019 15.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|305663360|ref|YP_003859648.1| - 0.01 16.1 0.0 0.02 15.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|305663360|ref|YP_003859648.1| - 0.013 15.9 0.0 0.024 15.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|305663360|ref|YP_003859648.1| - 0.021 15.2 0.0 0.029 14.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|305663360|ref|YP_003859648.1| - 0.028 14.2 0.0 0.035 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|305663360|ref|YP_003859648.1| - 0.051 13.5 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|305663360|ref|YP_003859648.1| - 0.14 12.4 0.0 0.23 11.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.7 gi|305663361|ref|YP_003859649.1| - 2.4e-18 66.3 37.1 3.1e-18 66.0 37.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|305663361|ref|YP_003859649.1| - 1.5e-06 27.7 14.6 1.5e-06 27.7 14.6 3.3 2 1 1 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|305663361|ref|YP_003859649.1| - 3.9e-06 26.4 38.1 1.4e-05 24.6 37.6 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|305663361|ref|YP_003859649.1| - 0.0011 18.9 11.4 0.0011 18.9 11.4 3.3 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|305663361|ref|YP_003859649.1| - 0.33 10.5 44.7 0.045 13.3 26.1 3.3 2 1 1 3 3 3 0 ABC-2 family transporter protein Phosphorylase PF00343.20 gi|305663362|ref|YP_003859650.1| - 4.4e-11 41.8 0.0 1.4e-09 36.8 0.0 2.1 1 1 1 2 2 2 2 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|305663362|ref|YP_003859650.1| - 0.00035 20.1 0.0 0.00071 19.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 YtxC PF08812.11 gi|305663362|ref|YP_003859650.1| - 0.036 13.7 1.8 0.072 12.7 1.8 1.5 1 0 0 1 1 1 0 YtxC-like family Tetraspanin PF00335.20 gi|305663363|ref|YP_003859651.1| - 1.6 8.4 7.8 1.9 8.1 7.8 1.1 1 0 0 1 1 1 0 Tetraspanin family COX7a PF02238.15 gi|305663363|ref|YP_003859651.1| - 2.9 8.4 4.7 0.92 10.0 0.8 1.9 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VII ABC_tran PF00005.27 gi|305663364|ref|YP_003859652.1| - 7.1e-34 117.3 0.0 9.6e-34 116.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305663364|ref|YP_003859652.1| - 9.2e-22 77.3 0.4 1.6e-21 76.6 0.4 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|305663364|ref|YP_003859652.1| - 0.00033 20.6 1.5 0.096 12.5 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|305663364|ref|YP_003859652.1| - 0.00073 19.8 0.5 0.0026 18.0 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305663364|ref|YP_003859652.1| - 0.0059 17.0 0.0 0.0093 16.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|305663364|ref|YP_003859652.1| - 0.013 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|305663364|ref|YP_003859652.1| - 0.031 13.7 0.1 2.4 7.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|305663364|ref|YP_003859652.1| - 0.074 12.8 0.0 0.39 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|305663364|ref|YP_003859652.1| - 0.17 12.4 0.0 0.3 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|305663364|ref|YP_003859652.1| - 0.17 10.5 1.5 0.97 8.0 0.1 2.4 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|305663365|ref|YP_003859653.1| - 1.3e-29 103.5 0.0 1.8e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305663365|ref|YP_003859653.1| - 5e-20 71.8 0.1 8.2e-20 71.1 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|305663365|ref|YP_003859653.1| - 1.5e-09 38.1 0.5 1.2e-05 25.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663365|ref|YP_003859653.1| - 6.1e-07 29.1 0.0 3.4e-05 23.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|305663365|ref|YP_003859653.1| - 4.2e-05 24.0 0.0 7.3e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|305663365|ref|YP_003859653.1| - 4.6e-05 23.4 0.0 0.0003 20.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|305663365|ref|YP_003859653.1| - 6.6e-05 22.6 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|305663365|ref|YP_003859653.1| - 0.00017 21.9 0.1 0.0023 18.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|305663365|ref|YP_003859653.1| - 0.0048 16.7 0.1 0.0068 16.2 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.17 gi|305663365|ref|YP_003859653.1| - 0.0055 16.8 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|305663365|ref|YP_003859653.1| - 0.0069 16.1 0.1 0.022 14.5 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein TniB PF05621.11 gi|305663365|ref|YP_003859653.1| - 0.0095 15.4 0.0 2.9 7.3 0.1 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_13 PF13166.6 gi|305663365|ref|YP_003859653.1| - 0.011 14.4 0.1 0.12 11.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|305663365|ref|YP_003859653.1| - 0.02 15.4 0.0 0.035 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|305663365|ref|YP_003859653.1| - 0.023 14.7 0.0 0.047 13.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 gi|305663365|ref|YP_003859653.1| - 0.026 14.9 0.0 0.16 12.4 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|305663365|ref|YP_003859653.1| - 0.034 14.0 0.0 0.15 11.9 0.0 2.1 3 0 0 3 3 2 0 Adenylylsulphate kinase NACHT PF05729.12 gi|305663365|ref|YP_003859653.1| - 0.034 14.0 0.0 0.065 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.26 gi|305663365|ref|YP_003859653.1| - 0.037 13.7 0.0 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|305663365|ref|YP_003859653.1| - 0.039 13.3 0.0 0.11 11.9 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PRK PF00485.18 gi|305663365|ref|YP_003859653.1| - 0.039 13.7 0.0 0.058 13.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_24 PF13479.6 gi|305663365|ref|YP_003859653.1| - 0.04 13.6 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|305663365|ref|YP_003859653.1| - 0.042 13.8 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|305663365|ref|YP_003859653.1| - 0.059 13.9 0.0 0.17 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|305663365|ref|YP_003859653.1| - 0.11 12.1 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|305663365|ref|YP_003859653.1| - 0.15 12.2 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 gi|305663365|ref|YP_003859653.1| - 0.17 11.7 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein NB-ARC PF00931.22 gi|305663365|ref|YP_003859653.1| - 0.21 10.8 0.0 0.35 10.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.22 gi|305663366|ref|YP_003859654.1| - 1.3e-19 70.7 13.2 1.3e-19 70.7 13.2 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|305663366|ref|YP_003859654.1| - 0.00011 22.1 0.1 0.00011 22.1 0.1 2.9 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|305663367|ref|YP_003859655.1| - 1.3e-26 93.5 17.5 1.3e-26 93.5 17.5 2.3 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|305663368|ref|YP_003859656.1| - 4.7e-27 94.9 10.8 1.8e-22 79.9 0.2 3.2 2 1 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Trypan_PARP PF05887.11 gi|305663368|ref|YP_003859656.1| - 0.021 14.8 9.1 0.043 13.8 9.1 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF3884 PF13024.6 gi|305663368|ref|YP_003859656.1| - 0.13 11.8 2.3 16 5.1 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3884) Translin PF01997.16 gi|305663369|ref|YP_003859657.1| - 1.7e-08 34.7 0.4 7.5e-07 29.3 0.4 2.5 1 1 0 1 1 1 1 Translin family DASH_Dam1 PF08653.10 gi|305663369|ref|YP_003859657.1| - 0.087 12.6 0.3 0.43 10.4 0.1 2.2 2 0 0 2 2 2 0 DASH complex subunit Dam1 BPL_LplA_LipB PF03099.19 gi|305663370|ref|YP_003859658.1| - 6.2e-15 55.3 0.0 9e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|305663370|ref|YP_003859658.1| - 8.1e-13 48.1 0.1 2.7e-12 46.5 0.0 1.9 2 0 0 2 2 2 1 HTH domain BPL_C PF02237.17 gi|305663370|ref|YP_003859658.1| - 2e-05 24.4 2.0 3.6e-05 23.6 2.0 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain GntR PF00392.21 gi|305663370|ref|YP_003859658.1| - 0.0035 17.0 0.0 0.0086 15.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|305663370|ref|YP_003859658.1| - 0.029 14.7 0.1 0.11 12.8 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator BioY PF02632.14 gi|305663371|ref|YP_003859659.1| - 7.8e-27 94.0 14.2 1.2e-26 93.4 14.2 1.3 1 0 0 1 1 1 1 BioY family ABC_tran PF00005.27 gi|305663372|ref|YP_003859660.1| - 1.5e-32 113.0 0.0 2.6e-14 53.9 0.0 3.2 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|305663372|ref|YP_003859660.1| - 1.8e-17 64.2 1.2 0.00027 20.8 0.0 4.1 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663372|ref|YP_003859660.1| - 1.2e-09 37.9 0.3 0.048 13.1 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|305663372|ref|YP_003859660.1| - 3e-08 33.3 0.3 0.0019 17.9 0.0 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|305663372|ref|YP_003859660.1| - 4.4e-08 33.5 0.2 0.018 15.3 0.0 3.2 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|305663372|ref|YP_003859660.1| - 6e-08 33.4 0.1 0.00064 20.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|305663372|ref|YP_003859660.1| - 1.7e-06 28.6 0.0 0.036 14.4 0.0 2.3 2 1 0 2 2 2 2 AAA ATPase domain NACHT PF05729.12 gi|305663372|ref|YP_003859660.1| - 1.6e-05 24.9 0.1 0.078 12.9 0.0 2.3 2 0 0 2 2 2 2 NACHT domain ATPase_2 PF01637.18 gi|305663372|ref|YP_003859660.1| - 2.4e-05 24.4 0.3 0.2 11.5 0.1 2.7 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea AAA PF00004.29 gi|305663372|ref|YP_003859660.1| - 8.2e-05 23.0 0.9 0.79 10.2 0.1 3.8 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|305663372|ref|YP_003859660.1| - 0.00012 21.9 0.0 1.4 8.6 0.0 3.2 3 1 0 3 3 2 2 AAA domain RsgA_GTPase PF03193.16 gi|305663372|ref|YP_003859660.1| - 0.00016 21.6 0.0 0.048 13.6 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase ATPase PF06745.13 gi|305663372|ref|YP_003859660.1| - 0.00061 19.2 1.0 4.1 6.7 0.0 3.3 3 0 0 3 3 3 0 KaiC TsaE PF02367.17 gi|305663372|ref|YP_003859660.1| - 0.00077 19.5 0.0 0.67 10.0 0.0 2.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|305663372|ref|YP_003859660.1| - 0.0011 19.0 1.4 2.7 8.0 0.1 3.9 4 0 0 4 4 4 1 AAA domain NB-ARC PF00931.22 gi|305663372|ref|YP_003859660.1| - 0.0015 17.8 0.1 0.23 10.6 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain Mg_chelatase PF01078.21 gi|305663372|ref|YP_003859660.1| - 0.0018 17.7 0.1 1.5 8.2 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MobB PF03205.14 gi|305663372|ref|YP_003859660.1| - 0.0023 17.8 0.1 0.0094 15.9 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|305663372|ref|YP_003859660.1| - 0.003 17.9 0.1 3.1 8.2 0.0 3.0 3 0 0 3 3 2 1 RNA helicase AAA_25 PF13481.6 gi|305663372|ref|YP_003859660.1| - 0.004 16.8 0.0 3.8 7.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|305663372|ref|YP_003859660.1| - 0.0054 16.5 0.8 0.61 9.8 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|305663372|ref|YP_003859660.1| - 0.006 16.3 1.8 0.013 15.2 0.0 2.1 3 1 0 3 3 2 1 AAA ATPase domain cobW PF02492.19 gi|305663372|ref|YP_003859660.1| - 0.0065 16.1 0.7 0.18 11.4 0.1 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|305663372|ref|YP_003859660.1| - 0.0083 16.2 0.4 0.58 10.3 0.0 3.1 4 0 0 4 4 3 1 50S ribosome-binding GTPase AAA_13 PF13166.6 gi|305663372|ref|YP_003859660.1| - 0.0084 14.8 0.9 1.6 7.3 0.0 3.5 4 0 0 4 4 4 1 AAA domain AAA_18 PF13238.6 gi|305663372|ref|YP_003859660.1| - 0.012 16.2 0.2 7.3 7.1 0.0 3.3 3 0 0 3 3 3 0 AAA domain T2SSE PF00437.20 gi|305663372|ref|YP_003859660.1| - 0.012 14.6 0.0 1.2 8.1 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|305663372|ref|YP_003859660.1| - 0.016 15.6 0.2 0.87 9.9 0.0 2.8 3 0 0 3 3 2 0 AAA domain Zeta_toxin PF06414.12 gi|305663372|ref|YP_003859660.1| - 0.025 13.9 0.1 0.41 9.9 0.0 2.5 3 0 0 3 3 3 0 Zeta toxin NTPase_1 PF03266.15 gi|305663372|ref|YP_003859660.1| - 0.026 14.4 0.1 0.33 10.8 0.1 2.6 2 1 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|305663372|ref|YP_003859660.1| - 0.029 14.4 0.1 2.7 8.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|305663372|ref|YP_003859660.1| - 0.033 13.7 0.3 3.6 7.1 0.0 3.0 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_27 PF13514.6 gi|305663372|ref|YP_003859660.1| - 0.036 13.7 0.0 6.6 6.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|305663372|ref|YP_003859660.1| - 0.036 14.2 0.1 0.42 10.8 0.0 2.5 3 0 0 3 3 3 0 AAA domain SRP54 PF00448.22 gi|305663372|ref|YP_003859660.1| - 0.049 13.3 0.1 0.57 9.8 0.0 2.5 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.18 gi|305663372|ref|YP_003859660.1| - 0.061 12.7 0.0 1.8 7.8 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family DLIC PF05783.11 gi|305663372|ref|YP_003859660.1| - 0.075 11.9 0.0 0.42 9.4 0.0 1.9 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) PIF1 PF05970.14 gi|305663372|ref|YP_003859660.1| - 0.081 12.1 0.0 8.1 5.5 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase PhoH PF02562.16 gi|305663372|ref|YP_003859660.1| - 0.083 12.3 0.0 3.1 7.2 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein SbcCD_C PF13558.6 gi|305663372|ref|YP_003859660.1| - 0.098 12.9 0.1 6.5 7.1 0.1 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.25 gi|305663372|ref|YP_003859660.1| - 0.1 12.2 0.1 14 5.3 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.7 gi|305663372|ref|YP_003859660.1| - 0.15 10.9 0.5 8.6 5.2 0.1 2.7 3 0 0 3 3 3 0 AAA-like domain TrwB_AAD_bind PF10412.9 gi|305663372|ref|YP_003859660.1| - 0.15 10.9 0.7 1.1 8.1 0.1 2.4 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.13 gi|305663372|ref|YP_003859660.1| - 0.17 11.1 1.3 14 4.8 0.0 3.0 4 0 0 4 4 3 0 Protein of unknown function (DUF815) DUF2791 PF10923.8 gi|305663372|ref|YP_003859660.1| - 0.21 10.4 0.0 6.5 5.5 0.0 2.1 2 0 0 2 2 2 0 P-loop Domain of unknown function (DUF2791) DUF3584 PF12128.8 gi|305663372|ref|YP_003859660.1| - 0.23 9.0 0.0 0.29 8.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF2075 PF09848.9 gi|305663372|ref|YP_003859660.1| - 0.24 10.6 0.2 2.5 7.2 0.0 2.4 4 0 0 4 4 2 0 Uncharacterized conserved protein (DUF2075) DUF87 PF01935.17 gi|305663372|ref|YP_003859660.1| - 0.42 10.7 6.7 1.2 9.2 1.0 3.0 2 1 1 3 3 3 0 Helicase HerA, central domain LPD3 PF18798.1 gi|305663373|ref|YP_003859661.1| - 0.11 12.8 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 3 ABC2_membrane PF01061.24 gi|305663374|ref|YP_003859662.1| - 3e-11 43.1 25.7 3e-11 43.1 25.7 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|305663374|ref|YP_003859662.1| - 1.4e-08 34.2 37.9 3.8e-08 32.8 38.0 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|305663375|ref|YP_003859663.1| - 2.5e-25 89.6 0.0 3.5e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663375|ref|YP_003859663.1| - 9.3e-09 35.5 1.0 0.003 17.4 0.1 2.5 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Zeta_toxin PF06414.12 gi|305663375|ref|YP_003859663.1| - 0.0013 18.0 0.0 0.0024 17.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.6 gi|305663375|ref|YP_003859663.1| - 0.0043 17.6 0.0 0.0091 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305663375|ref|YP_003859663.1| - 0.0043 17.4 0.0 0.0062 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|305663375|ref|YP_003859663.1| - 0.0056 17.1 0.0 0.048 14.1 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|305663375|ref|YP_003859663.1| - 0.0065 16.4 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|305663375|ref|YP_003859663.1| - 0.0094 15.7 0.0 0.96 9.1 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|305663375|ref|YP_003859663.1| - 0.023 14.2 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|305663375|ref|YP_003859663.1| - 0.04 13.5 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|305663375|ref|YP_003859663.1| - 0.06 13.1 0.0 0.087 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|305663375|ref|YP_003859663.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|305663375|ref|YP_003859663.1| - 0.1 11.9 0.0 0.68 9.3 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF58 PF01882.18 gi|305663376|ref|YP_003859664.1| - 5.1e-13 49.1 0.0 1.7e-12 47.4 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF58 VWA_CoxE PF05762.14 gi|305663376|ref|YP_003859664.1| - 0.074 12.4 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein PRC PF05239.16 gi|305663377|ref|YP_003859665.1| - 0.00025 21.0 5.0 0.38 10.9 1.0 3.0 2 1 0 2 2 2 2 PRC-barrel domain AAA_3 PF07726.11 gi|305663378|ref|YP_003859666.1| - 1.1e-56 190.2 0.3 5.6e-55 184.7 0.3 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|305663378|ref|YP_003859666.1| - 5e-15 55.1 0.0 1.3e-14 53.7 0.0 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|305663378|ref|YP_003859666.1| - 2.6e-10 40.4 0.0 1.5e-09 38.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|305663378|ref|YP_003859666.1| - 1.3e-05 25.6 0.2 0.00018 21.9 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|305663378|ref|YP_003859666.1| - 7.3e-05 22.6 0.2 0.005 16.6 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|305663378|ref|YP_003859666.1| - 0.00041 20.1 0.0 0.0037 17.0 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|305663378|ref|YP_003859666.1| - 0.00085 18.8 0.1 0.013 14.9 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI TIP49_C PF17856.1 gi|305663378|ref|YP_003859666.1| - 0.0013 18.8 0.0 0.072 13.2 0.0 2.6 2 0 0 2 2 2 1 TIP49 AAA-lid domain AAA_18 PF13238.6 gi|305663378|ref|YP_003859666.1| - 0.045 14.3 0.0 0.14 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain MCM_lid PF17855.1 gi|305663378|ref|YP_003859666.1| - 0.047 14.1 0.0 0.13 12.7 0.0 1.8 1 0 0 1 1 1 0 MCM AAA-lid domain AAA_33 PF13671.6 gi|305663378|ref|YP_003859666.1| - 0.051 13.7 0.0 0.084 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain MCM PF00493.23 gi|305663378|ref|YP_003859666.1| - 0.052 12.6 0.0 4.5 6.3 0.0 2.4 2 1 0 2 2 2 0 MCM P-loop domain AAA_16 PF13191.6 gi|305663378|ref|YP_003859666.1| - 0.1 12.9 0.0 0.26 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|305663378|ref|YP_003859666.1| - 0.12 12.4 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|305663379|ref|YP_003859667.1| - 3.3e-25 89.2 0.0 6.3e-25 88.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663379|ref|YP_003859667.1| - 5.1e-10 39.7 6.4 4.5e-06 26.7 0.4 2.6 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663379|ref|YP_003859667.1| - 0.00072 19.1 0.6 0.21 11.0 0.0 2.9 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain DUF4162 PF13732.6 gi|305663379|ref|YP_003859667.1| - 0.0038 17.9 0.8 0.0095 16.6 0.8 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|305663379|ref|YP_003859667.1| - 0.0064 17.0 0.5 0.019 15.5 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|305663379|ref|YP_003859667.1| - 0.0081 15.9 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain CENP-X PF09415.10 gi|305663379|ref|YP_003859667.1| - 0.013 15.8 0.0 0.054 13.8 0.1 1.9 2 0 0 2 2 2 0 CENP-S associating Centromere protein X AAA_29 PF13555.6 gi|305663379|ref|YP_003859667.1| - 0.014 15.1 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|305663379|ref|YP_003859667.1| - 0.019 14.7 0.1 1.7 8.4 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein MukB PF04310.12 gi|305663379|ref|YP_003859667.1| - 0.021 14.7 0.3 0.065 13.0 0.1 1.8 2 0 0 2 2 2 0 MukB N-terminal AAA_22 PF13401.6 gi|305663379|ref|YP_003859667.1| - 0.024 14.9 1.2 0.38 11.0 1.2 2.5 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|305663379|ref|YP_003859667.1| - 0.08 12.5 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|305663379|ref|YP_003859667.1| - 0.085 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|305663379|ref|YP_003859667.1| - 0.098 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|305663379|ref|YP_003859667.1| - 0.14 12.6 0.2 0.57 10.6 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF1599 PF07659.11 gi|305663379|ref|YP_003859667.1| - 1 9.8 3.5 1.8 9.1 0.1 3.0 3 1 0 4 4 4 0 Nucleotide modification associated domain 1 Sigma_reg_N PF13800.6 gi|305663381|ref|YP_003859669.1| - 0.29 11.5 5.2 14 6.0 0.0 3.0 3 0 0 3 3 3 0 Sigma factor regulator N-terminal Wzz PF02706.15 gi|305663381|ref|YP_003859669.1| - 0.52 10.7 6.5 0.12 12.7 1.3 2.3 3 0 0 3 3 3 0 Chain length determinant protein VWA PF00092.28 gi|305663382|ref|YP_003859670.1| - 1.2e-17 64.7 0.0 1.8e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|305663382|ref|YP_003859670.1| - 9e-16 58.5 0.0 1.8e-15 57.5 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|305663382|ref|YP_003859670.1| - 2.1e-05 24.0 0.2 3.4e-05 23.4 0.0 1.3 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein BatA PF07584.11 gi|305663382|ref|YP_003859670.1| - 0.0094 16.3 2.6 0.029 14.7 0.4 2.2 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal DUF2201 PF09967.9 gi|305663382|ref|YP_003859670.1| - 0.031 14.4 0.0 0.067 13.3 0.0 1.5 1 0 0 1 1 1 0 VWA-like domain (DUF2201) Mistic PF11458.8 gi|305663382|ref|YP_003859670.1| - 0.068 13.1 2.5 2.6 8.1 0.0 2.9 2 2 0 2 2 2 0 Membrane-integrating protein Mistic VWA_3 PF13768.6 gi|305663382|ref|YP_003859670.1| - 0.19 11.7 0.0 0.31 11.0 0.0 1.6 1 1 0 1 1 1 0 von Willebrand factor type A domain VWA PF00092.28 gi|305663383|ref|YP_003859671.1| - 1e-11 45.4 0.0 1.7e-11 44.7 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|305663383|ref|YP_003859671.1| - 1.7e-09 38.3 0.0 9.6e-09 35.9 0.0 2.2 1 1 1 2 2 2 1 von Willebrand factor type A domain DUF1194 PF06707.11 gi|305663383|ref|YP_003859671.1| - 0.05 12.8 0.1 0.13 11.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1194) VWA_3 PF13768.6 gi|305663383|ref|YP_003859671.1| - 0.089 12.7 0.0 0.27 11.2 0.0 1.8 1 1 0 1 1 1 0 von Willebrand factor type A domain BatA PF07584.11 gi|305663383|ref|YP_003859671.1| - 0.38 11.1 3.2 2 8.8 3.2 2.2 1 1 0 1 1 1 0 Aerotolerance regulator N-terminal Reticulon PF02453.17 gi|305663384|ref|YP_003859672.1| - 0.12 12.4 1.3 2 8.3 0.1 2.3 2 0 0 2 2 2 0 Reticulon Phage_holin_4_1 PF05105.12 gi|305663384|ref|YP_003859672.1| - 2.8 8.1 6.9 24 5.1 2.9 3.1 2 1 0 2 2 2 0 Bacteriophage holin family ABC_tran PF00005.27 gi|305663386|ref|YP_003859674.1| - 1.2e-43 148.9 0.0 1.9e-21 77.0 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|305663386|ref|YP_003859674.1| - 4.2e-10 39.9 16.8 0.00013 21.9 1.2 4.4 3 2 1 5 5 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|305663386|ref|YP_003859674.1| - 8.3e-09 35.1 0.1 0.0029 17.3 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|305663386|ref|YP_003859674.1| - 1.4e-07 32.0 0.0 0.012 16.0 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|305663386|ref|YP_003859674.1| - 2.8e-06 28.0 0.1 0.042 14.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|305663386|ref|YP_003859674.1| - 2.4e-05 24.0 0.0 0.23 11.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|305663386|ref|YP_003859674.1| - 0.00012 22.0 0.2 0.34 10.8 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 gi|305663386|ref|YP_003859674.1| - 0.00012 21.6 5.5 0.62 9.5 0.1 3.7 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|305663386|ref|YP_003859674.1| - 0.00017 21.9 0.3 0.82 9.9 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_18 PF13238.6 gi|305663386|ref|YP_003859674.1| - 0.00071 20.1 0.0 0.93 10.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|305663386|ref|YP_003859674.1| - 0.00072 19.5 0.9 0.67 9.8 0.0 2.3 2 0 0 2 2 2 2 NACHT domain ATPase_2 PF01637.18 gi|305663386|ref|YP_003859674.1| - 0.00083 19.3 0.3 0.068 13.1 0.0 2.6 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|305663386|ref|YP_003859674.1| - 0.00095 19.3 0.1 2 8.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain G-alpha PF00503.20 gi|305663386|ref|YP_003859674.1| - 0.0014 17.9 0.0 0.15 11.2 0.0 2.2 2 0 0 2 2 2 1 G-protein alpha subunit Myosin-VI_CBD PF16521.5 gi|305663386|ref|YP_003859674.1| - 0.0016 18.4 0.0 1.3 9.1 0.0 2.3 2 0 0 2 2 2 1 Myosin VI cargo binding domain APS_kinase PF01583.20 gi|305663386|ref|YP_003859674.1| - 0.0017 18.3 0.1 0.88 9.5 0.0 2.3 2 0 0 2 2 2 1 Adenylylsulphate kinase NB-ARC PF00931.22 gi|305663386|ref|YP_003859674.1| - 0.0019 17.4 1.2 1.7 7.7 0.1 2.7 2 1 0 2 2 2 2 NB-ARC domain IstB_IS21 PF01695.17 gi|305663386|ref|YP_003859674.1| - 0.0025 17.6 0.1 0.033 13.9 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|305663386|ref|YP_003859674.1| - 0.0027 17.8 2.5 0.9 9.6 0.2 2.7 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|305663386|ref|YP_003859674.1| - 0.0043 16.8 1.2 0.29 10.8 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|305663386|ref|YP_003859674.1| - 0.0045 17.4 0.5 3.6 8.0 0.0 3.3 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|305663386|ref|YP_003859674.1| - 0.0046 17.3 0.3 4.2 7.8 0.1 2.7 2 1 0 2 2 2 1 RNA helicase Mg_chelatase PF01078.21 gi|305663386|ref|YP_003859674.1| - 0.0061 16.0 0.0 0.85 9.0 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|305663386|ref|YP_003859674.1| - 0.0065 16.2 0.2 1.8 8.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|305663386|ref|YP_003859674.1| - 0.0075 15.4 0.0 2.2 7.2 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF87 PF01935.17 gi|305663386|ref|YP_003859674.1| - 0.0076 16.4 1.8 0.3 11.2 0.1 2.7 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_24 PF13479.6 gi|305663386|ref|YP_003859674.1| - 0.01 15.6 0.3 5.2 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|305663386|ref|YP_003859674.1| - 0.029 13.0 0.5 0.16 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|305663386|ref|YP_003859674.1| - 0.041 13.5 0.0 4 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|305663386|ref|YP_003859674.1| - 0.043 13.2 0.0 1 8.6 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family Zeta_toxin PF06414.12 gi|305663386|ref|YP_003859674.1| - 0.05 12.9 0.2 4.3 6.6 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.6 gi|305663386|ref|YP_003859674.1| - 0.079 13.2 0.2 14 5.9 0.1 2.5 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|305663386|ref|YP_003859674.1| - 0.093 11.9 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 KAP family P-loop domain IMCp PF12314.8 gi|305663386|ref|YP_003859674.1| - 0.11 12.8 0.1 0.29 11.4 0.0 1.7 2 0 0 2 2 1 0 Inner membrane complex protein MeaB PF03308.16 gi|305663386|ref|YP_003859674.1| - 0.11 11.4 0.0 3.5 6.5 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PIF1 PF05970.14 gi|305663386|ref|YP_003859674.1| - 0.11 11.6 0.2 0.98 8.5 0.0 2.4 3 0 0 3 3 3 0 PIF1-like helicase AAA_7 PF12775.7 gi|305663386|ref|YP_003859674.1| - 0.22 11.0 0.1 7.5 6.0 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region Ploopntkinase3 PF18751.1 gi|305663386|ref|YP_003859674.1| - 0.24 11.3 0.4 7.8 6.4 0.0 2.3 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 PhoH PF02562.16 gi|305663386|ref|YP_003859674.1| - 0.24 10.8 0.3 0.92 8.9 0.1 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_5 PF07728.14 gi|305663386|ref|YP_003859674.1| - 0.33 10.9 0.9 23 5.0 0.3 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) Polbeta PF18765.1 gi|305663388|ref|YP_003859676.1| - 6.2e-10 39.0 0.0 9.3e-10 38.5 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|305663388|ref|YP_003859676.1| - 2.3e-09 37.4 0.1 1.1e-08 35.2 0.1 2.0 1 1 0 1 1 1 1 Nucleotidyltransferase domain RlaP PF10127.9 gi|305663388|ref|YP_003859676.1| - 0.0035 17.0 0.0 0.0039 16.8 0.0 1.1 1 0 0 1 1 1 1 RNA repair pathway DNA polymerase beta family DNA_pol_B_palm PF14792.6 gi|305663388|ref|YP_003859676.1| - 0.016 15.4 0.2 0.038 14.2 0.2 1.9 1 1 0 1 1 1 0 DNA polymerase beta palm HEPN PF05168.14 gi|305663389|ref|YP_003859677.1| - 5.5e-35 120.1 0.7 6.9e-35 119.7 0.7 1.0 1 0 0 1 1 1 1 HEPN domain TPR_2 PF07719.17 gi|305663389|ref|YP_003859677.1| - 3 8.2 5.9 1.4 9.2 0.3 2.9 1 1 1 2 2 2 0 Tetratricopeptide repeat Hydrolase_4 PF12146.8 gi|305663390|ref|YP_003859678.1| - 2.1e-24 86.1 0.0 2.7e-14 53.0 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|305663390|ref|YP_003859678.1| - 2.5e-20 73.2 0.0 3.2e-13 49.9 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|305663390|ref|YP_003859678.1| - 1.1e-10 42.6 0.0 2.3e-09 38.2 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family UPF0227 PF05728.12 gi|305663390|ref|YP_003859678.1| - 6.4e-10 39.3 0.0 9.8e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) Peptidase_S9 PF00326.21 gi|305663390|ref|YP_003859678.1| - 3.4e-09 36.5 0.0 4.6e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase family BAAT_C PF08840.11 gi|305663390|ref|YP_003859678.1| - 8.2e-09 35.7 0.0 1.8e-07 31.3 0.0 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.13 gi|305663390|ref|YP_003859678.1| - 9.8e-07 28.8 0.0 1.3e-06 28.4 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.18 gi|305663390|ref|YP_003859678.1| - 1.1e-06 28.4 0.0 3.3e-05 23.5 0.0 2.3 1 1 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|305663390|ref|YP_003859678.1| - 6.1e-06 26.0 0.0 1.1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) AXE1 PF05448.12 gi|305663390|ref|YP_003859678.1| - 2.7e-05 23.0 0.0 0.00026 19.8 0.0 2.0 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) DUF2048 PF09752.9 gi|305663390|ref|YP_003859678.1| - 0.00017 20.8 0.0 0.039 13.0 0.0 2.1 2 0 0 2 2 2 2 Abhydrolase domain containing 18 Abhydrolase_2 PF02230.16 gi|305663390|ref|YP_003859678.1| - 0.0011 18.8 0.1 0.57 9.9 0.0 2.2 1 1 1 2 2 2 2 Phospholipase/Carboxylesterase LIDHydrolase PF10230.9 gi|305663390|ref|YP_003859678.1| - 0.0016 18.0 0.0 0.0044 16.6 0.0 1.6 2 0 0 2 2 2 1 Lipid-droplet associated hydrolase Esterase PF00756.20 gi|305663390|ref|YP_003859678.1| - 0.0019 17.9 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 Putative esterase DUF1100 PF06500.11 gi|305663390|ref|YP_003859678.1| - 0.0028 16.5 0.0 0.0035 16.2 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Peptidase_S15 PF02129.18 gi|305663390|ref|YP_003859678.1| - 0.0042 16.7 0.0 0.053 13.1 0.0 2.0 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DUF2974 PF11187.8 gi|305663390|ref|YP_003859678.1| - 0.006 16.2 0.0 0.0087 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Abhydrolase_4 PF08386.10 gi|305663390|ref|YP_003859678.1| - 0.037 14.1 0.0 0.058 13.5 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein PGAP1 PF07819.13 gi|305663390|ref|YP_003859678.1| - 0.042 13.6 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein DUF900 PF05990.12 gi|305663390|ref|YP_003859678.1| - 0.045 13.3 0.0 0.074 12.5 0.0 1.5 1 1 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) LIP PF03583.14 gi|305663390|ref|YP_003859678.1| - 0.055 12.8 0.0 0.25 10.6 0.0 1.8 2 0 0 2 2 2 0 Secretory lipase Ser_hydrolase PF06821.13 gi|305663390|ref|YP_003859678.1| - 0.1 12.5 0.0 0.26 11.1 0.0 1.5 1 1 0 1 1 1 0 Serine hydrolase PNP_UDP_1 PF01048.20 gi|305663392|ref|YP_003859680.1| - 4e-45 153.9 1.2 4.6e-45 153.7 1.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily ZT_dimer PF16916.5 gi|305663393|ref|YP_003859681.1| - 1.3e-13 50.8 2.0 2.3e-13 50.1 2.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Cation_efflux PF01545.21 gi|305663393|ref|YP_003859681.1| - 2.4e-13 50.3 20.4 3e-13 49.9 20.4 1.1 1 0 0 1 1 1 1 Cation efflux family DNase-RNase PF02577.14 gi|305663393|ref|YP_003859681.1| - 0.01 15.5 0.1 0.019 14.6 0.1 1.3 1 0 0 1 1 1 0 Bifunctional nuclease Acetyltransf_1 PF00583.25 gi|305663394|ref|YP_003859682.1| - 1.1e-10 41.8 0.1 1.6e-10 41.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|305663394|ref|YP_003859682.1| - 2.3e-06 27.9 0.2 4.1e-06 27.1 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|305663394|ref|YP_003859682.1| - 4.3e-06 26.6 0.0 7.8e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|305663394|ref|YP_003859682.1| - 5.2e-05 23.9 0.0 7.3e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|305663394|ref|YP_003859682.1| - 9.8e-05 22.3 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|305663394|ref|YP_003859682.1| - 0.0028 17.2 0.1 0.0028 17.2 0.1 1.4 1 1 0 1 1 1 1 Putative acetyl-transferase NB-ARC PF00931.22 gi|305663394|ref|YP_003859682.1| - 0.016 14.4 0.1 0.022 13.9 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Acetyltransf_CG PF14542.6 gi|305663394|ref|YP_003859682.1| - 0.032 14.4 0.0 0.063 13.4 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DDE_Tnp_1_2 PF13586.6 gi|305663394|ref|YP_003859682.1| - 0.098 13.0 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain TBP PF00352.21 gi|305663395|ref|YP_003859683.1| - 2.2e-63 210.2 0.1 3.5e-31 107.0 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|305663395|ref|YP_003859683.1| - 7e-06 26.1 0.0 0.068 13.3 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF87 PF01935.17 gi|305663396|ref|YP_003859684.1| - 2.7e-37 129.1 0.3 5.6e-37 128.0 0.1 1.6 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|305663396|ref|YP_003859684.1| - 2.2e-05 23.3 0.0 0.0074 14.9 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|305663396|ref|YP_003859684.1| - 3.6e-05 23.8 1.0 9.6e-05 22.5 1.0 1.8 1 0 0 1 1 1 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|305663396|ref|YP_003859684.1| - 0.0015 17.5 0.1 0.0045 15.9 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Sigma70_r4 PF04545.16 gi|305663396|ref|YP_003859684.1| - 0.035 13.6 0.0 0.12 12.0 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 FtsK_SpoIIIE PF01580.18 gi|305663396|ref|YP_003859684.1| - 0.052 12.9 0.0 0.14 11.4 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|305663396|ref|YP_003859684.1| - 0.063 13.5 0.0 0.38 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain NurA PF09376.10 gi|305663397|ref|YP_003859685.1| - 1.3e-20 74.1 2.5 2.2e-20 73.4 2.5 1.3 1 0 0 1 1 1 1 NurA domain Metallophos PF00149.28 gi|305663398|ref|YP_003859686.1| - 8e-11 42.8 0.3 5.9e-09 36.7 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|305663398|ref|YP_003859686.1| - 4.7e-06 26.9 0.2 6.8e-06 26.4 0.2 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HupF_HypC PF01455.18 gi|305663399|ref|YP_003859687.1| - 5.2e-14 52.1 5.1 6.1e-14 51.9 4.2 1.6 2 0 0 2 2 2 1 HupF/HypC family FdhD-NarQ PF02634.15 gi|305663400|ref|YP_003859688.1| - 1.5e-28 100.1 0.0 2.7e-28 99.3 0.0 1.4 1 1 1 2 2 2 1 FdhD/NarQ family PALP PF00291.25 gi|305663403|ref|YP_003859691.1| - 1.3e-44 152.8 0.0 1.6e-44 152.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_45 PF14947.6 gi|305663403|ref|YP_003859691.1| - 0.0072 16.3 1.0 0.022 14.7 1.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_12 PF08461.10 gi|305663403|ref|YP_003859691.1| - 0.016 15.1 0.9 0.059 13.3 0.9 2.1 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_24 PF13412.6 gi|305663403|ref|YP_003859691.1| - 0.022 14.3 1.4 1.7 8.3 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding ADK_lid PF05191.14 gi|305663403|ref|YP_003859691.1| - 0.022 14.7 1.5 0.05 13.6 1.5 1.6 1 0 0 1 1 1 0 Adenylate kinase, active site lid HTH_20 PF12840.7 gi|305663403|ref|YP_003859691.1| - 0.024 14.7 0.0 0.069 13.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain zinc_ribbon_2 PF13240.6 gi|305663403|ref|YP_003859691.1| - 0.036 13.8 3.5 0.076 12.7 3.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|305663403|ref|YP_003859691.1| - 0.091 12.8 0.9 0.15 12.1 0.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon FUR PF01475.19 gi|305663403|ref|YP_003859691.1| - 0.12 12.5 1.4 0.36 11.0 0.7 2.0 2 0 0 2 2 2 0 Ferric uptake regulator family HypA PF01155.19 gi|305663403|ref|YP_003859691.1| - 0.13 12.3 0.5 0.29 11.1 0.3 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C4_Topoisom PF01396.19 gi|305663403|ref|YP_003859691.1| - 0.15 11.9 2.8 0.55 10.1 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_4 PF13717.6 gi|305663403|ref|YP_003859691.1| - 3.3 7.7 5.8 31 4.6 5.7 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|305663403|ref|YP_003859691.1| - 4.7 6.6 4.8 31 4.0 0.2 2.8 3 0 0 3 3 3 0 Transcription factor zinc-finger CPSase_L_D2 PF02786.17 gi|305663405|ref|YP_003859693.1| - 1.1e-73 247.2 0.3 1.5e-73 246.8 0.3 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|305663405|ref|YP_003859693.1| - 1.3e-43 148.0 0.1 1.2e-42 144.9 0.0 2.3 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|305663405|ref|YP_003859693.1| - 3.5e-36 123.6 0.0 6.6e-36 122.7 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|305663405|ref|YP_003859693.1| - 4e-11 42.8 0.0 7.7e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|305663405|ref|YP_003859693.1| - 4.3e-09 36.2 0.1 1e-08 34.9 0.1 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|305663405|ref|YP_003859693.1| - 0.0006 19.9 0.2 0.0013 18.8 0.2 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|305663405|ref|YP_003859693.1| - 0.00073 19.3 0.1 0.0021 17.8 0.1 1.7 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon RimK PF08443.11 gi|305663405|ref|YP_003859693.1| - 0.0017 18.0 0.2 0.0078 15.8 0.2 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_ST PF14397.6 gi|305663405|ref|YP_003859693.1| - 0.0046 16.2 0.0 0.49 9.6 0.0 2.2 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp GARS_A PF01071.19 gi|305663405|ref|YP_003859693.1| - 0.019 14.8 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.6 gi|305663405|ref|YP_003859693.1| - 0.034 13.7 0.3 0.11 12.1 0.1 1.9 1 1 1 2 2 2 0 ATP-grasp domain UPF0047 PF01894.17 gi|305663406|ref|YP_003859694.1| - 6e-14 52.2 0.0 2.5e-07 30.9 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0047 DUF4911 PF16256.5 gi|305663406|ref|YP_003859694.1| - 0.023 14.7 0.0 0.12 12.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) UPF0047 PF01894.17 gi|305663407|ref|YP_003859695.1| - 5.6e-10 39.4 0.0 7e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 HEPN PF05168.14 gi|305663408|ref|YP_003859696.1| - 5.1e-36 123.4 0.0 5.8e-36 123.2 0.0 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|305663409|ref|YP_003859697.1| - 6.1e-12 45.7 0.1 6.3e-12 45.6 0.1 1.2 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|305663409|ref|YP_003859697.1| - 9.8e-11 41.6 0.0 1.5e-10 41.0 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|305663409|ref|YP_003859697.1| - 0.0073 16.1 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DNA_pol_B_palm PF14792.6 gi|305663409|ref|YP_003859697.1| - 0.04 14.1 0.0 0.06 13.6 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase beta palm AlaDh_PNT_C PF01262.21 gi|305663410|ref|YP_003859698.1| - 7.5e-67 224.8 0.2 1.1e-66 224.2 0.2 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 gi|305663410|ref|YP_003859698.1| - 2.8e-33 115.1 0.0 6.3e-33 114.0 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, N-terminal domain 2-Hacid_dh_C PF02826.19 gi|305663410|ref|YP_003859698.1| - 3.6e-08 33.0 0.0 0.004 16.5 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAS PF03059.16 gi|305663410|ref|YP_003859698.1| - 0.001 18.4 0.0 0.0085 15.5 0.0 2.1 1 1 0 1 1 1 1 Nicotianamine synthase protein ADH_zinc_N PF00107.26 gi|305663410|ref|YP_003859698.1| - 0.0025 17.8 1.3 0.031 14.3 0.3 2.9 2 2 0 2 2 2 1 Zinc-binding dehydrogenase Pyr_redox_2 PF07992.14 gi|305663410|ref|YP_003859698.1| - 0.013 14.7 0.2 0.019 14.2 0.2 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Phage_holin_3_6 PF07332.11 gi|305663410|ref|YP_003859698.1| - 0.021 14.9 0.4 0.041 13.9 0.4 1.4 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Shikimate_DH PF01488.20 gi|305663410|ref|YP_003859698.1| - 0.031 14.4 0.5 1.4 9.0 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase GIDA PF01134.22 gi|305663410|ref|YP_003859698.1| - 0.037 13.1 0.4 0.056 12.5 0.4 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Rep_1B PF17873.1 gi|305663410|ref|YP_003859698.1| - 0.082 12.8 0.4 0.26 11.2 0.4 1.8 1 0 0 1 1 1 0 Replicase polyprotein 1ab NAD_binding_2 PF03446.15 gi|305663410|ref|YP_003859698.1| - 0.11 12.7 0.2 1 9.5 0.2 2.4 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Methyltransf_23 PF13489.6 gi|305663410|ref|YP_003859698.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain XylR_N PF06505.11 gi|305663410|ref|YP_003859698.1| - 0.14 11.9 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Activator of aromatic catabolism Methyltransf_12 PF08242.12 gi|305663410|ref|YP_003859698.1| - 0.14 12.9 0.0 0.76 10.6 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain NAD_binding_8 PF13450.6 gi|305663410|ref|YP_003859698.1| - 0.32 11.2 1.5 1.1 9.6 0.7 2.3 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|305663410|ref|YP_003859698.1| - 0.5 9.4 1.7 0.75 8.8 1.7 1.2 1 0 0 1 1 1 0 FAD binding domain PNTB_4TM PF12769.7 gi|305663411|ref|YP_003859699.1| - 8.7e-32 109.4 10.8 1e-31 109.2 10.8 1.1 1 0 0 1 1 1 1 4TM region of pyridine nucleotide transhydrogenase, mitoch Coiled-coil_56 PF09813.9 gi|305663411|ref|YP_003859699.1| - 0.17 11.9 0.2 0.25 11.4 0.2 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 56 PNTB PF02233.16 gi|305663412|ref|YP_003859700.1| - 3.6e-176 586.6 25.8 4.2e-176 586.4 25.8 1.0 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit TPP_enzyme_M PF00205.22 gi|305663412|ref|YP_003859700.1| - 4.7e-06 26.4 0.1 3.5e-05 23.6 0.1 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain AA_kinase PF00696.28 gi|305663412|ref|YP_003859700.1| - 0.046 13.3 0.5 1 8.9 0.0 2.5 2 1 2 4 4 4 0 Amino acid kinase family PdxA PF04166.12 gi|305663413|ref|YP_003859701.1| - 1.9e-83 280.2 0.0 2.2e-83 279.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA Helicase_C_2 PF13307.6 gi|305663414|ref|YP_003859702.1| - 6.3e-21 75.3 0.0 1.2e-20 74.4 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|305663414|ref|YP_003859702.1| - 2.1e-17 63.3 0.0 3.6e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|305663414|ref|YP_003859702.1| - 2.7e-07 30.8 0.0 9.6e-06 25.7 0.0 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|305663414|ref|YP_003859702.1| - 9.2e-05 22.3 0.1 0.079 12.7 0.0 3.0 3 0 0 3 3 3 2 DEAD/DEAH box helicase UPF0113 PF03657.13 gi|305663414|ref|YP_003859702.1| - 0.011 15.9 1.3 2.3 8.6 0.1 3.0 2 1 0 2 2 2 0 UPF0113 PUA domain AAA_22 PF13401.6 gi|305663414|ref|YP_003859702.1| - 0.094 13.0 2.4 6.6 7.0 0.0 2.9 4 0 0 4 4 4 0 AAA domain DUF3215 PF11503.8 gi|305663414|ref|YP_003859702.1| - 0.12 12.3 0.5 0.65 9.9 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3215) MFS_1 PF07690.16 gi|305663415|ref|YP_003859703.1| - 2.4e-16 59.6 33.6 2.7e-16 59.4 33.6 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1 PF07690.16 gi|305663417|ref|YP_003859705.1| - 1.1e-05 24.6 1.9 1.2e-05 24.4 1.9 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|305663417|ref|YP_003859705.1| - 0.013 14.4 0.8 0.013 14.4 0.8 1.4 2 0 0 2 2 2 0 MFS_1 like family UPF0126 PF03458.13 gi|305663417|ref|YP_003859705.1| - 0.025 14.4 0.8 0.034 14.0 0.7 1.4 1 1 0 1 1 1 0 UPF0126 domain LDcluster4 PF18306.1 gi|305663418|ref|YP_003859706.1| - 1.4e-21 76.8 0.0 1.5e-21 76.6 0.0 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|305663418|ref|YP_003859706.1| - 0.001 19.2 0.1 0.0019 18.3 0.0 1.5 1 1 0 1 1 1 1 Possible lysine decarboxylase TPALS PF18178.1 gi|305663418|ref|YP_003859706.1| - 0.031 13.7 0.1 0.19 11.1 0.0 2.0 2 0 0 2 2 2 0 TIR- and PNP-associating SLOG family Pyr_redox_3 PF13738.6 gi|305663418|ref|YP_003859706.1| - 0.05 12.8 0.0 0.071 12.3 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DNA_processg_A PF02481.15 gi|305663418|ref|YP_003859706.1| - 0.051 12.8 0.0 0.11 11.7 0.0 1.5 1 1 1 2 2 2 0 DNA recombination-mediator protein A LSDAT_prok PF18171.1 gi|305663418|ref|YP_003859706.1| - 0.077 12.2 0.2 0.4 9.9 0.0 1.9 2 0 0 2 2 2 0 SLOG in TRPM, prokaryote ATPase PF06745.13 gi|305663419|ref|YP_003859707.1| - 4e-87 291.4 0.0 4.7e-87 291.2 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|305663419|ref|YP_003859707.1| - 2.2e-07 29.9 0.1 7.1e-07 28.2 0.1 1.7 1 1 0 1 1 1 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|305663419|ref|YP_003859707.1| - 0.0026 17.1 0.0 0.0055 16.0 0.0 1.5 1 0 0 1 1 1 1 Rad51 MEDS PF14417.6 gi|305663419|ref|YP_003859707.1| - 0.0029 17.4 0.0 0.0078 16.1 0.0 1.7 2 1 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_25 PF13481.6 gi|305663419|ref|YP_003859707.1| - 0.0056 16.3 0.0 0.011 15.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|305663419|ref|YP_003859707.1| - 0.018 14.1 0.0 0.027 13.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.9 gi|305663419|ref|YP_003859707.1| - 0.022 14.0 0.0 0.027 13.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|305663419|ref|YP_003859707.1| - 0.03 14.7 0.1 0.06 13.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|305663419|ref|YP_003859707.1| - 0.048 14.1 0.0 0.07 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|305663419|ref|YP_003859707.1| - 0.17 11.4 0.0 0.35 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region HTH_38 PF13936.6 gi|305663420|ref|YP_003859708.1| - 7.6e-05 22.4 0.0 0.00027 20.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|305663420|ref|YP_003859708.1| - 0.00064 20.1 0.7 0.0025 18.2 0.7 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain ZapB PF06005.12 gi|305663420|ref|YP_003859708.1| - 0.0018 18.6 1.5 0.0042 17.5 1.5 1.7 1 0 0 1 1 1 1 Cell division protein ZapB Herpes_UL6 PF01763.16 gi|305663420|ref|YP_003859708.1| - 0.0027 16.3 0.5 0.0033 16.0 0.5 1.1 1 0 0 1 1 1 1 Herpesvirus UL6 like COG2 PF06148.11 gi|305663420|ref|YP_003859708.1| - 0.0057 16.8 1.7 0.014 15.5 1.7 1.7 1 1 0 1 1 1 1 COG (conserved oligomeric Golgi) complex component, COG2 Myc-LZ PF02344.15 gi|305663420|ref|YP_003859708.1| - 0.0085 16.2 0.1 0.024 14.7 0.1 1.8 1 0 0 1 1 1 1 Myc leucine zipper domain NYD-SP28_assoc PF14775.6 gi|305663420|ref|YP_003859708.1| - 0.0096 16.0 0.6 0.028 14.5 0.6 1.8 1 0 0 1 1 1 1 Sperm tail C-terminal domain HTH_23 PF13384.6 gi|305663420|ref|YP_003859708.1| - 0.012 15.4 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Cep57_CLD_2 PF14197.6 gi|305663420|ref|YP_003859708.1| - 0.016 15.3 0.6 0.044 13.9 0.6 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 GerE PF00196.19 gi|305663420|ref|YP_003859708.1| - 0.017 14.6 0.0 0.32 10.6 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family TSC22 PF01166.18 gi|305663420|ref|YP_003859708.1| - 0.02 15.2 0.2 0.062 13.6 0.2 1.8 1 0 0 1 1 1 0 TSC-22/dip/bun family Sigma70_r4 PF04545.16 gi|305663420|ref|YP_003859708.1| - 0.033 13.7 0.0 0.087 12.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|305663420|ref|YP_003859708.1| - 0.034 14.1 0.0 0.14 12.2 0.0 2.0 2 0 0 2 2 1 0 HTH domain Prominin PF05478.11 gi|305663420|ref|YP_003859708.1| - 0.04 11.9 0.7 0.047 11.7 0.7 1.1 1 0 0 1 1 1 0 Prominin HTH_20 PF12840.7 gi|305663420|ref|YP_003859708.1| - 0.043 13.9 0.0 0.091 12.8 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|305663420|ref|YP_003859708.1| - 0.045 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|305663420|ref|YP_003859708.1| - 0.051 13.5 0.0 0.34 10.8 0.0 2.5 2 1 1 3 3 3 0 Bacterial regulatory protein, arsR family bZIP_1 PF00170.21 gi|305663420|ref|YP_003859708.1| - 0.067 13.3 2.9 0.16 12.1 2.4 2.0 1 1 0 1 1 1 0 bZIP transcription factor PI_PP_I PF18363.1 gi|305663420|ref|YP_003859708.1| - 0.093 12.9 0.2 0.9 9.8 0.2 2.3 2 1 0 2 2 2 0 Phosphoinositide phosphatase insertion domain DUF948 PF06103.11 gi|305663420|ref|YP_003859708.1| - 0.1 12.9 5.9 0.17 12.2 0.8 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Terminase_5 PF06056.12 gi|305663420|ref|YP_003859708.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 gi|305663420|ref|YP_003859708.1| - 0.13 12.3 0.0 0.42 10.7 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix Fib_alpha PF08702.10 gi|305663420|ref|YP_003859708.1| - 0.28 11.3 2.6 0.68 10.1 1.3 2.1 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family APC_N_CC PF16689.5 gi|305663420|ref|YP_003859708.1| - 0.33 11.0 5.1 0.4 10.8 2.8 2.3 2 1 0 2 2 2 0 Coiled-coil N-terminus of APC, dimerisation domain YabA PF06156.13 gi|305663420|ref|YP_003859708.1| - 0.43 11.2 2.4 0.79 10.4 1.4 1.9 1 1 1 2 2 2 0 Initiation control protein YabA FlaC_arch PF05377.11 gi|305663420|ref|YP_003859708.1| - 0.53 10.7 8.5 14 6.1 7.0 2.9 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF61 PF01886.16 gi|305663421|ref|YP_003859709.1| - 1.3e-36 125.4 1.0 1.5e-36 125.2 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 DUF4558 PF15104.6 gi|305663421|ref|YP_003859709.1| - 0.035 14.2 0.2 1.5 8.9 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4558) Peptidase_M41 PF01434.18 gi|305663422|ref|YP_003859710.1| - 1.5e-06 28.2 10.9 0.00032 20.6 4.0 2.0 1 1 1 2 2 2 2 Peptidase family M41 DivIVA PF05103.13 gi|305663422|ref|YP_003859710.1| - 9e-06 25.8 16.2 0.0061 16.6 5.1 2.1 1 1 1 2 2 2 2 DivIVA protein V-ATPase_G PF03179.15 gi|305663422|ref|YP_003859710.1| - 3.3e-05 24.3 20.6 0.00011 22.7 20.6 1.7 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ApoLp-III PF07464.11 gi|305663422|ref|YP_003859710.1| - 0.00015 21.9 5.8 0.00017 21.7 5.8 1.0 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) ATP-synt_B PF00430.18 gi|305663422|ref|YP_003859710.1| - 0.00023 21.3 20.8 0.04 14.0 10.5 2.1 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|305663422|ref|YP_003859710.1| - 0.0014 18.1 22.4 0.0049 16.3 10.9 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) HrpE PF06188.12 gi|305663422|ref|YP_003859710.1| - 0.0021 18.0 5.5 0.016 15.1 1.7 2.0 1 1 1 2 2 2 1 HrpE/YscL/FliH and V-type ATPase subunit E V-ATPase_G_2 PF16999.5 gi|305663422|ref|YP_003859710.1| - 0.0022 18.4 21.6 0.006 17.0 21.6 1.7 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit GBP_C PF02841.14 gi|305663422|ref|YP_003859710.1| - 0.0065 15.9 3.7 0.0091 15.4 3.7 1.3 1 1 0 1 1 1 1 Guanylate-binding protein, C-terminal domain Dynamin_M PF01031.20 gi|305663422|ref|YP_003859710.1| - 0.031 13.5 3.3 0.04 13.1 3.3 1.3 1 0 0 1 1 1 0 Dynamin central region TCTP PF00838.17 gi|305663422|ref|YP_003859710.1| - 0.031 14.6 2.3 0.037 14.4 2.3 1.1 1 0 0 1 1 1 0 Translationally controlled tumour protein ISG65-75 PF11727.8 gi|305663422|ref|YP_003859710.1| - 0.041 13.1 8.8 0.054 12.7 8.8 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein Prominin PF05478.11 gi|305663422|ref|YP_003859710.1| - 0.043 11.8 0.9 0.048 11.6 0.9 1.1 1 0 0 1 1 1 0 Prominin PIN_8 PF18476.1 gi|305663422|ref|YP_003859710.1| - 0.044 13.7 5.2 0.047 13.6 5.2 1.0 1 0 0 1 1 1 0 PIN like domain TryThrA_C PF12319.8 gi|305663422|ref|YP_003859710.1| - 0.047 13.2 1.8 0.19 11.2 0.3 1.9 1 1 1 2 2 2 0 Tryptophan-Threonine-rich plasmodium antigen C terminal DUF883 PF05957.13 gi|305663422|ref|YP_003859710.1| - 0.05 14.2 10.3 2.1 9.0 2.4 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) FAM76 PF16046.5 gi|305663422|ref|YP_003859710.1| - 0.077 12.3 6.0 0.092 12.1 6.0 1.1 1 0 0 1 1 1 0 FAM76 protein Apolipoprotein PF01442.18 gi|305663422|ref|YP_003859710.1| - 0.083 12.8 11.0 0.33 10.8 11.0 1.7 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Histidinol_dh PF00815.20 gi|305663422|ref|YP_003859710.1| - 0.097 11.7 6.1 0.11 11.4 6.1 1.0 1 0 0 1 1 1 0 Histidinol dehydrogenase YtxH PF12732.7 gi|305663422|ref|YP_003859710.1| - 0.1 13.1 9.2 15 6.2 9.2 2.2 1 1 0 1 1 1 0 YtxH-like protein Pepsin-I3 PF06394.13 gi|305663422|ref|YP_003859710.1| - 0.15 12.3 0.7 0.25 11.6 0.7 1.4 1 0 0 1 1 1 0 Pepsin inhibitor-3-like repeated domain Exonuc_VII_L PF02601.15 gi|305663422|ref|YP_003859710.1| - 0.18 11.3 3.3 0.2 11.2 3.3 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Phasin PF05597.11 gi|305663422|ref|YP_003859710.1| - 0.24 11.4 9.5 0.41 10.7 9.5 1.4 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Bac_RepA_C PF18008.1 gi|305663422|ref|YP_003859710.1| - 0.25 11.7 2.1 0.35 11.2 1.0 1.8 1 1 1 2 2 2 0 Replication initiator protein A C-terminal domain DUF5312 PF17239.2 gi|305663422|ref|YP_003859710.1| - 0.32 9.3 8.0 0.088 11.2 2.0 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5312) MT0933_antitox PF14013.6 gi|305663422|ref|YP_003859710.1| - 0.32 11.3 0.2 0.32 11.3 0.2 2.4 2 1 0 2 2 2 0 MT0933-like antitoxin protein IL31 PF15209.6 gi|305663422|ref|YP_003859710.1| - 0.34 10.7 2.2 2 8.2 2.3 1.9 1 1 0 1 1 1 0 Interleukin 31 TetR_C_13 PF16925.5 gi|305663422|ref|YP_003859710.1| - 0.34 10.9 2.5 6.1 6.8 0.2 2.0 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain OmpH PF03938.14 gi|305663422|ref|YP_003859710.1| - 0.4 11.0 9.2 0.47 10.8 9.2 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) REF PF05755.12 gi|305663422|ref|YP_003859710.1| - 0.41 10.4 3.2 2.3 8.0 0.4 2.0 1 1 1 2 2 2 0 Rubber elongation factor protein (REF) Telomere_reg-2 PF10193.9 gi|305663422|ref|YP_003859710.1| - 0.46 10.9 4.4 0.27 11.7 0.7 2.0 1 1 1 2 2 2 0 Telomere length regulation protein CENP-H PF05837.12 gi|305663422|ref|YP_003859710.1| - 0.49 10.8 12.1 0.34 11.3 10.3 1.6 1 1 1 2 2 2 0 Centromere protein H (CENP-H) PIN_2 PF10130.9 gi|305663422|ref|YP_003859710.1| - 0.51 10.6 6.0 1 9.6 6.0 1.5 1 1 0 1 1 1 0 PIN domain ARGLU PF15346.6 gi|305663422|ref|YP_003859710.1| - 0.54 10.1 23.7 1.5 8.7 23.7 1.6 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 AbiH PF14253.6 gi|305663422|ref|YP_003859710.1| - 0.59 10.0 4.0 0.72 9.7 4.0 1.0 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH SpoIISA_toxin PF14171.6 gi|305663422|ref|YP_003859710.1| - 0.61 9.7 2.6 0.67 9.6 2.6 1.0 1 0 0 1 1 1 0 Toxin SpoIISA, type II toxin-antitoxin system Cauli_AT PF03233.13 gi|305663422|ref|YP_003859710.1| - 0.72 9.8 7.6 0.36 10.7 3.1 1.7 1 1 1 2 2 2 0 Aphid transmission protein DCB PF16213.5 gi|305663422|ref|YP_003859710.1| - 0.78 9.4 7.4 2.4 7.8 7.3 1.7 1 1 0 1 1 1 0 Dimerisation and cyclophilin-binding domain of Mon2 CdvA PF18822.1 gi|305663422|ref|YP_003859710.1| - 0.86 9.4 17.5 1.2 9.0 6.0 2.2 1 1 1 2 2 2 0 CdvA-like coiled-coil domain DUF370 PF04025.12 gi|305663422|ref|YP_003859710.1| - 1.2 9.3 6.5 4.4 7.5 1.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF370) DUF4230 PF14014.6 gi|305663422|ref|YP_003859710.1| - 1.3 9.3 11.6 3.4 7.9 1.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4230) TMPIT PF07851.13 gi|305663422|ref|YP_003859710.1| - 1.6 7.9 5.1 1.9 7.7 5.1 1.0 1 0 0 1 1 1 0 TMPIT-like protein LPP PF04728.13 gi|305663422|ref|YP_003859710.1| - 1.8 9.0 7.6 9.7 6.7 0.7 2.4 2 0 0 2 2 2 0 Lipoprotein leucine-zipper DNA_gyraseB PF00204.25 gi|305663422|ref|YP_003859710.1| - 1.8 8.0 8.2 1.1 8.7 1.1 2.0 1 1 1 2 2 2 0 DNA gyrase B RNA_pol_Rpb1_4 PF05000.17 gi|305663422|ref|YP_003859710.1| - 2.6 8.0 4.5 2.5 8.1 0.8 2.0 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 4 Rotamase_3 PF13616.6 gi|305663422|ref|YP_003859710.1| - 2.6 8.6 6.9 3.5 8.2 1.5 2.1 2 0 0 2 2 2 0 PPIC-type PPIASE domain DUF1488 PF07369.11 gi|305663422|ref|YP_003859710.1| - 3.1 7.8 10.8 6.7 6.8 0.8 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1488) EMP24_GP25L PF01105.24 gi|305663422|ref|YP_003859710.1| - 3.2 7.7 5.6 2.1 8.3 3.7 1.6 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Spore_II_R PF09551.10 gi|305663422|ref|YP_003859710.1| - 3.3 8.2 8.8 3.8 8.0 2.4 2.0 1 1 1 2 2 2 0 Stage II sporulation protein R (spore_II_R) CemA PF03040.14 gi|305663422|ref|YP_003859710.1| - 4.2 7.3 5.8 5.3 6.9 5.8 1.2 1 0 0 1 1 1 0 CemA family DUF2203 PF09969.9 gi|305663422|ref|YP_003859710.1| - 5.4 7.8 9.6 11 6.8 9.6 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) RNase_J_C PF17770.1 gi|305663422|ref|YP_003859710.1| - 5.9 8.0 9.7 24 6.0 3.7 2.5 1 1 1 2 2 2 0 Ribonuclease J C-terminal domain Glyco_trans_1_2 PF13524.6 gi|305663422|ref|YP_003859710.1| - 8.5 6.8 10.6 4.5 7.7 2.3 2.1 1 1 1 2 2 2 0 Glycosyl transferases group 1 V_ATPase_I PF01496.19 gi|305663423|ref|YP_003859711.1| - 5.4e-17 61.0 5.2 1.3e-09 36.6 0.0 3.1 3 0 0 3 3 3 3 V-type ATPase 116kDa subunit family DLP_helical PF18709.1 gi|305663423|ref|YP_003859711.1| - 0.00031 20.0 2.2 0.036 13.3 0.6 2.2 2 0 0 2 2 2 2 Dynamin-like helical domain CortBP2 PF09727.9 gi|305663423|ref|YP_003859711.1| - 0.012 15.5 2.2 0.038 13.9 0.3 2.0 2 0 0 2 2 2 0 Cortactin-binding protein-2 DASH_Duo1 PF08651.10 gi|305663423|ref|YP_003859711.1| - 0.019 14.8 3.3 0.02 14.7 1.2 2.2 2 0 0 2 2 2 0 DASH complex subunit Duo1 NPV_P10 PF05531.12 gi|305663423|ref|YP_003859711.1| - 0.023 15.2 1.2 0.023 15.2 1.2 2.5 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Prefoldin_2 PF01920.20 gi|305663423|ref|YP_003859711.1| - 0.15 12.1 2.1 0.5 10.3 0.2 2.3 2 0 0 2 2 2 0 Prefoldin subunit SKA2 PF16740.5 gi|305663423|ref|YP_003859711.1| - 0.28 11.0 2.4 3.1 7.6 0.2 2.5 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 TSNAXIP1_N PF15739.5 gi|305663423|ref|YP_003859711.1| - 4.3 7.7 7.0 7.8 6.9 3.3 2.5 2 0 0 2 2 2 0 Translin-associated factor X-interacting N-terminus ATP-synt_C PF00137.21 gi|305663424|ref|YP_003859712.1| - 1.4e-14 54.2 25.0 1.4e-09 38.2 4.6 2.4 3 0 0 3 3 3 2 ATP synthase subunit C TrbE PF11100.8 gi|305663424|ref|YP_003859712.1| - 1.4 9.2 5.3 1.5 9.1 1.2 2.7 2 1 0 2 2 2 0 Conjugal transfer protein TrbE vATP-synt_E PF01991.18 gi|305663425|ref|YP_003859713.1| - 1.1e-19 70.7 13.6 1.4e-19 70.4 13.6 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|305663425|ref|YP_003859713.1| - 0.0012 19.2 16.8 0.011 16.2 16.6 2.3 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|305663425|ref|YP_003859713.1| - 0.0015 18.6 5.9 0.0015 18.6 5.9 2.2 1 1 1 2 2 2 1 DivIVA protein HrpE PF06188.12 gi|305663425|ref|YP_003859713.1| - 0.0035 17.2 5.5 0.0054 16.6 5.5 1.2 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.18 gi|305663425|ref|YP_003859713.1| - 0.0064 16.6 16.3 0.027 14.5 16.3 1.9 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|305663425|ref|YP_003859713.1| - 0.038 13.4 15.9 0.26 10.7 7.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) FliH PF02108.16 gi|305663425|ref|YP_003859713.1| - 0.16 12.1 6.1 0.29 11.2 1.1 2.5 1 1 1 2 2 2 0 Flagellar assembly protein FliH Bac_rhamnosid6H PF17389.2 gi|305663425|ref|YP_003859713.1| - 0.26 10.5 0.1 0.31 10.2 0.1 1.1 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Proton_antipo_C PF01010.19 gi|305663426|ref|YP_003859714.1| - 0.0056 16.3 0.7 0.0056 16.3 0.7 1.6 2 0 0 2 2 2 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus ATP-synt_F PF01990.17 gi|305663427|ref|YP_003859715.1| - 4.5e-09 36.5 0.3 5.6e-09 36.2 0.3 1.2 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit NUC205 PF08168.11 gi|305663427|ref|YP_003859715.1| - 0.091 12.3 0.0 8.7 6.0 0.0 2.4 2 0 0 2 2 2 0 NUC205 domain ATP-synt_ab PF00006.25 gi|305663428|ref|YP_003859716.1| - 3e-86 288.5 0.0 4.3e-86 288.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|305663428|ref|YP_003859716.1| - 2.5e-41 140.3 0.2 4.9e-41 139.4 0.2 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|305663428|ref|YP_003859716.1| - 5.7e-12 46.0 4.7 2.1e-11 44.1 4.7 2.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.22 gi|305663428|ref|YP_003859716.1| - 0.027 14.7 0.5 8.6 6.6 0.3 2.7 2 0 0 2 2 2 0 Peptidase family M23 DUF2085 PF09858.9 gi|305663428|ref|YP_003859716.1| - 0.064 13.7 0.0 0.17 12.4 0.0 1.7 1 0 0 1 1 1 0 Predicted membrane protein (DUF2085) AAA_22 PF13401.6 gi|305663428|ref|YP_003859716.1| - 0.17 12.2 0.0 0.31 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|305663429|ref|YP_003859717.1| - 4.6e-62 209.4 0.0 6.4e-62 209.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|305663429|ref|YP_003859717.1| - 3.7e-06 27.4 1.1 8.7e-06 26.2 1.1 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|305663429|ref|YP_003859717.1| - 0.0014 18.7 1.9 0.0027 17.8 0.5 2.2 3 0 0 3 3 3 1 HAS barrel domain ATP-synt_D PF01813.17 gi|305663430|ref|YP_003859718.1| - 4.6e-39 134.3 11.1 5.5e-39 134.0 11.1 1.1 1 0 0 1 1 1 1 ATP synthase subunit D AGOG PF09171.10 gi|305663431|ref|YP_003859719.1| - 0.00066 19.1 0.0 0.00098 18.5 0.0 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase ADH_N PF08240.12 gi|305663432|ref|YP_003859720.1| - 3.3e-28 97.8 4.0 4.8e-28 97.2 4.0 1.2 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|305663432|ref|YP_003859720.1| - 1.4e-08 34.7 0.0 3.8e-08 33.4 0.0 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|305663432|ref|YP_003859720.1| - 0.00029 21.9 0.0 0.00048 21.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase MTS PF05175.14 gi|305663432|ref|YP_003859720.1| - 0.053 13.1 0.0 0.087 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain TrkA_N PF02254.18 gi|305663432|ref|YP_003859720.1| - 0.11 12.7 0.0 0.3 11.4 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Thg1 PF04446.12 gi|305663433|ref|YP_003859721.1| - 1.3e-18 67.2 0.1 3.2e-18 65.9 0.1 1.6 2 0 0 2 2 2 1 tRNAHis guanylyltransferase DUF2838 PF10998.8 gi|305663433|ref|YP_003859721.1| - 0.025 14.8 0.3 0.044 14.0 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2838) Metallophos_2 PF12850.7 gi|305663434|ref|YP_003859722.1| - 9.3e-08 32.4 0.1 1.6e-07 31.7 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|305663434|ref|YP_003859722.1| - 1.6e-07 32.1 0.2 1.8e-07 31.8 0.2 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Zn_ribbon_SprT PF17283.2 gi|305663434|ref|YP_003859722.1| - 0.04 13.8 0.2 1.1 9.2 0.0 2.5 2 0 0 2 2 2 0 SprT-like zinc ribbon domain ABC_tran PF00005.27 gi|305663437|ref|YP_003859725.1| - 4.8e-26 91.9 0.0 8.5e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663437|ref|YP_003859725.1| - 6.9e-12 45.8 2.3 2.9e-07 30.6 0.0 2.8 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|305663437|ref|YP_003859725.1| - 0.00017 21.3 0.9 0.0006 19.5 0.4 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF87 PF01935.17 gi|305663437|ref|YP_003859725.1| - 0.0017 18.5 1.6 0.25 11.4 0.4 2.8 2 1 0 2 2 2 1 Helicase HerA, central domain Rad17 PF03215.15 gi|305663437|ref|YP_003859725.1| - 0.0031 17.5 0.0 0.0063 16.4 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain MukB PF04310.12 gi|305663437|ref|YP_003859725.1| - 0.0035 17.2 0.1 0.009 15.8 0.1 1.6 1 1 0 1 1 1 1 MukB N-terminal DUF4162 PF13732.6 gi|305663437|ref|YP_003859725.1| - 0.0038 17.9 0.2 0.01 16.5 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_27 PF13514.6 gi|305663437|ref|YP_003859725.1| - 0.0055 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|305663437|ref|YP_003859725.1| - 0.015 15.0 0.0 1.7 8.3 0.1 2.4 3 0 0 3 3 3 0 AAA ATPase domain AAA_23 PF13476.6 gi|305663437|ref|YP_003859725.1| - 0.016 15.7 0.0 0.032 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|305663437|ref|YP_003859725.1| - 0.019 14.7 0.2 0.033 13.9 0.2 1.8 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|305663437|ref|YP_003859725.1| - 0.02 13.9 0.1 0.035 13.1 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|305663437|ref|YP_003859725.1| - 0.029 14.8 0.2 0.065 13.6 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.7 gi|305663437|ref|YP_003859725.1| - 0.083 11.8 0.5 0.79 8.6 0.0 2.4 3 0 0 3 3 3 0 AAA-like domain SMC_N PF02463.19 gi|305663437|ref|YP_003859725.1| - 0.096 12.1 0.1 0.69 9.3 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|305663437|ref|YP_003859725.1| - 0.15 12.3 0.1 0.83 9.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain DUF4530 PF15039.6 gi|305663437|ref|YP_003859725.1| - 0.21 11.8 0.1 0.41 10.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4530) ATPase PF06745.13 gi|305663438|ref|YP_003859726.1| - 9.9e-28 97.0 0.3 1.1e-27 96.9 0.3 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|305663438|ref|YP_003859726.1| - 1.6e-09 37.6 0.0 3e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|305663438|ref|YP_003859726.1| - 2.5e-06 26.4 1.6 5.1e-06 25.4 1.7 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.6 gi|305663438|ref|YP_003859726.1| - 7.1e-05 22.8 0.4 0.0017 18.4 0.2 2.3 1 1 1 2 2 2 1 AAA domain CbiA PF01656.23 gi|305663438|ref|YP_003859726.1| - 0.00033 20.7 0.0 0.00049 20.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DnaB_C PF03796.15 gi|305663438|ref|YP_003859726.1| - 0.00036 19.9 0.0 0.00053 19.4 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain T2SSE PF00437.20 gi|305663438|ref|YP_003859726.1| - 0.00066 18.8 0.1 0.01 14.9 0.0 2.2 2 1 0 2 2 2 1 Type II/IV secretion system protein DUF835 PF05763.12 gi|305663438|ref|YP_003859726.1| - 0.00096 18.9 1.2 0.002 17.9 1.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF835) CSTF2_hinge PF14327.6 gi|305663438|ref|YP_003859726.1| - 0.0018 18.7 0.2 0.037 14.5 0.0 2.3 1 1 1 2 2 2 1 Hinge domain of cleavage stimulation factor subunit 2 AAA_16 PF13191.6 gi|305663438|ref|YP_003859726.1| - 0.002 18.5 0.0 0.0029 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|305663438|ref|YP_003859726.1| - 0.003 17.5 1.2 0.94 9.4 1.3 3.2 1 1 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|305663438|ref|YP_003859726.1| - 0.0032 17.5 0.0 0.0087 16.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|305663438|ref|YP_003859726.1| - 0.0035 17.6 0.0 0.0099 16.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|305663438|ref|YP_003859726.1| - 0.005 16.0 0.0 0.0075 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Elong_Iki1 PF10483.9 gi|305663438|ref|YP_003859726.1| - 0.0054 16.3 0.1 0.006 16.1 0.1 1.2 1 0 0 1 1 1 1 Elongator subunit Iki1 TIMELESS PF04821.14 gi|305663438|ref|YP_003859726.1| - 0.0055 16.0 0.6 0.0077 15.5 0.6 1.1 1 0 0 1 1 1 1 Timeless protein Zeta_toxin PF06414.12 gi|305663438|ref|YP_003859726.1| - 0.0075 15.6 0.0 0.017 14.4 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_10 PF12846.7 gi|305663438|ref|YP_003859726.1| - 0.0091 15.0 0.3 0.017 14.0 0.3 1.5 1 1 0 1 1 1 1 AAA-like domain IstB_IS21 PF01695.17 gi|305663438|ref|YP_003859726.1| - 0.011 15.5 0.0 0.02 14.7 0.0 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|305663438|ref|YP_003859726.1| - 0.025 13.9 0.1 0.12 11.7 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|305663438|ref|YP_003859726.1| - 0.027 14.2 0.3 0.055 13.2 0.2 1.5 1 1 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|305663438|ref|YP_003859726.1| - 0.032 13.1 0.5 0.1 11.4 0.2 2.0 2 1 0 2 2 2 0 Papillomavirus helicase NB-ARC PF00931.22 gi|305663438|ref|YP_003859726.1| - 0.039 13.1 0.0 0.1 11.8 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|305663438|ref|YP_003859726.1| - 0.071 13.3 0.0 0.092 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|305663438|ref|YP_003859726.1| - 0.13 11.9 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|305663438|ref|YP_003859726.1| - 0.16 12.3 0.1 0.53 10.7 0.0 1.8 1 1 1 2 2 2 0 RNA helicase DUF2075 PF09848.9 gi|305663438|ref|YP_003859726.1| - 0.17 11.1 0.4 1.1 8.5 0.1 2.0 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Alpha_L_fucos PF01120.17 gi|305663439|ref|YP_003859727.1| - 1.3e-112 376.8 0.1 1.7e-112 376.4 0.1 1.1 1 0 0 1 1 1 1 Alpha-L-fucosidase Fucosidase_C PF16757.5 gi|305663439|ref|YP_003859727.1| - 5e-06 27.0 0.0 9.1e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Alpha-L-fucosidase C-terminal domain GHL6 PF14871.6 gi|305663439|ref|YP_003859727.1| - 0.008 16.3 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 DUF498 PF04430.14 gi|305663440|ref|YP_003859728.1| - 7.7e-21 74.2 0.0 8.6e-21 74.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) Cyclase PF04199.13 gi|305663440|ref|YP_003859728.1| - 0.15 12.3 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative cyclase DUF4203 PF13886.6 gi|305663441|ref|YP_003859729.1| - 0.026 14.2 43.3 0.11 12.2 43.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) GATase_6 PF13522.6 gi|305663442|ref|YP_003859730.1| - 0.0041 17.3 0.0 0.0065 16.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain Cation_efflux PF01545.21 gi|305663443|ref|YP_003859731.1| - 3.4e-41 141.2 19.9 4e-41 140.9 19.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|305663443|ref|YP_003859731.1| - 8.6e-26 89.9 4.1 1.4e-25 89.2 4.1 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Spore_YhcN_YlaJ PF09580.10 gi|305663443|ref|YP_003859731.1| - 0.018 15.1 0.4 0.026 14.6 0.4 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Ni_hydr_CYTB PF01292.20 gi|305663443|ref|YP_003859731.1| - 0.52 9.9 8.4 40 3.8 8.4 2.1 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 Phage_holin_3_3 PF16083.5 gi|305663443|ref|YP_003859731.1| - 0.68 10.1 7.3 1.8 8.7 0.5 2.7 3 1 0 3 3 3 0 LydA holin phage, holin superfamily III eIF-5a PF01287.20 gi|305663444|ref|YP_003859732.1| - 1.3e-09 38.0 0.1 2e-09 37.4 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|305663444|ref|YP_003859732.1| - 0.00021 21.2 0.0 0.00044 20.2 0.0 1.6 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|305663444|ref|YP_003859732.1| - 0.051 13.6 0.2 0.16 12.0 0.3 1.7 2 0 0 2 2 2 0 Elongation factor P (EF-P) OB domain YcgR_2 PF12945.7 gi|305663444|ref|YP_003859732.1| - 0.097 12.8 0.1 0.18 12.0 0.1 1.6 1 1 0 1 1 1 0 Flagellar protein YcgR SRP54 PF00448.22 gi|305663445|ref|YP_003859733.1| - 4.8e-67 225.4 0.0 7e-67 224.9 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|305663445|ref|YP_003859733.1| - 3.4e-27 95.0 0.0 9.1e-27 93.6 0.0 1.8 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|305663445|ref|YP_003859733.1| - 5.7e-15 55.3 0.3 2.5e-14 53.3 0.3 2.1 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 gi|305663445|ref|YP_003859733.1| - 0.0001 21.7 0.0 0.00018 20.8 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 gi|305663445|ref|YP_003859733.1| - 0.0011 19.1 0.0 0.0018 18.3 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|305663445|ref|YP_003859733.1| - 0.0014 18.9 0.0 0.0047 17.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|305663445|ref|YP_003859733.1| - 0.0036 17.5 0.0 0.0072 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|305663445|ref|YP_003859733.1| - 0.009 15.8 0.0 0.02 14.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|305663445|ref|YP_003859733.1| - 0.033 14.2 0.0 0.097 12.7 0.0 1.9 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_18 PF13238.6 gi|305663445|ref|YP_003859733.1| - 0.035 14.7 0.2 0.18 12.3 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|305663445|ref|YP_003859733.1| - 0.038 13.7 0.0 0.13 12.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|305663445|ref|YP_003859733.1| - 0.041 13.5 0.1 0.62 9.6 0.1 2.3 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|305663445|ref|YP_003859733.1| - 0.064 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|305663445|ref|YP_003859733.1| - 0.076 12.3 0.0 0.34 10.2 0.0 2.1 3 0 0 3 3 3 0 KaiC AAA_19 PF13245.6 gi|305663445|ref|YP_003859733.1| - 0.08 13.3 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|305663445|ref|YP_003859733.1| - 0.089 12.7 0.1 0.25 11.2 0.0 1.8 2 0 0 2 2 1 0 NACHT domain AAA_5 PF07728.14 gi|305663445|ref|YP_003859733.1| - 0.15 12.1 0.0 0.4 10.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|305663445|ref|YP_003859733.1| - 0.17 12.3 0.4 0.92 9.9 0.4 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|305663445|ref|YP_003859733.1| - 0.18 12.2 0.0 0.36 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.6 gi|305663445|ref|YP_003859733.1| - 0.29 11.6 2.6 0.7 10.3 0.4 2.8 3 1 0 3 3 2 0 AAA domain THUMP PF02926.17 gi|305663446|ref|YP_003859734.1| - 6.7e-13 49.0 0.7 6.7e-13 49.0 0.7 2.1 2 1 1 3 3 3 1 THUMP domain Ribosomal_L21e PF01157.18 gi|305663447|ref|YP_003859735.1| - 2.7e-31 107.4 0.7 3.7e-31 107.0 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|305663448|ref|YP_003859736.1| - 1.7e-10 41.3 4.4 2.5e-10 40.8 4.3 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb4 DUF3740 PF12548.8 gi|305663448|ref|YP_003859736.1| - 0.0016 18.9 0.1 0.0018 18.7 0.1 1.1 1 0 0 1 1 1 1 Sulfatase protein TetR_C_5 PF08360.11 gi|305663448|ref|YP_003859736.1| - 0.15 12.2 1.8 0.79 9.9 0.1 2.3 1 1 1 2 2 2 0 QacR-like protein, C-terminal region DUF5370 PF17340.2 gi|305663448|ref|YP_003859736.1| - 0.17 11.8 0.3 0.43 10.5 0.1 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5370) DUF655 PF04919.12 gi|305663449|ref|YP_003859737.1| - 6.1e-61 205.5 1.4 7.1e-61 205.3 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|305663449|ref|YP_003859737.1| - 2.8e-05 24.3 0.8 0.0003 21.0 0.1 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|305663449|ref|YP_003859737.1| - 0.016 15.8 5.5 0.042 14.5 1.3 3.1 2 1 1 3 3 3 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|305663449|ref|YP_003859737.1| - 0.051 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH PF00633.23 gi|305663449|ref|YP_003859737.1| - 0.079 12.9 0.0 0.29 11.1 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|305663450|ref|YP_003859738.1| - 6.7e-33 113.9 0.4 8.7e-33 113.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|305663450|ref|YP_003859738.1| - 1.3e-05 24.8 0.5 6.9e-05 22.4 0.0 2.1 1 1 1 2 2 2 1 Putative methyltransferase Methyltransf_25 PF13649.6 gi|305663450|ref|YP_003859738.1| - 0.0002 22.0 0.1 0.00084 20.0 0.0 2.1 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|305663450|ref|YP_003859738.1| - 0.0036 17.9 0.0 0.14 12.8 0.0 2.8 3 0 0 3 3 3 1 Methyltransferase domain MTS PF05175.14 gi|305663450|ref|YP_003859738.1| - 0.009 15.6 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_16 PF10294.9 gi|305663450|ref|YP_003859738.1| - 0.011 15.5 0.2 0.51 10.1 0.2 2.6 1 1 0 1 1 1 0 Lysine methyltransferase Methyltransf_32 PF13679.6 gi|305663450|ref|YP_003859738.1| - 0.028 14.4 0.0 0.075 13.0 0.0 1.7 1 1 1 2 2 2 0 Methyltransferase domain FtsJ PF01728.19 gi|305663450|ref|YP_003859738.1| - 0.086 13.0 0.0 0.11 12.5 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase DOT1 PF08123.13 gi|305663450|ref|YP_003859738.1| - 0.088 12.3 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_12 PF08242.12 gi|305663450|ref|YP_003859738.1| - 0.091 13.5 0.1 0.21 12.3 0.0 1.7 2 0 0 2 2 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|305663450|ref|YP_003859738.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|305663451|ref|YP_003859739.1| - 2.2e-09 37.1 0.0 4.8e-09 36.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|305663451|ref|YP_003859739.1| - 0.00061 20.5 0.0 0.0019 18.9 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|305663451|ref|YP_003859739.1| - 0.0015 18.5 0.0 0.0025 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|305663451|ref|YP_003859739.1| - 0.0016 17.9 0.0 0.0022 17.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|305663451|ref|YP_003859739.1| - 0.004 17.8 0.0 0.02 15.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|305663451|ref|YP_003859739.1| - 0.0058 16.4 0.0 0.0082 15.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|305663451|ref|YP_003859739.1| - 0.0072 16.1 0.0 0.0094 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|305663451|ref|YP_003859739.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.6 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 SpoU_methylase PF00588.19 gi|305663452|ref|YP_003859740.1| - 3.1e-29 101.9 0.0 4.3e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|305663452|ref|YP_003859740.1| - 0.00029 20.8 0.0 0.0024 17.7 0.0 2.0 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Ribosomal_L16 PF00252.18 gi|305663453|ref|YP_003859741.1| - 8.6e-37 126.1 0.2 1e-36 125.9 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Diphthamide_syn PF01866.17 gi|305663454|ref|YP_003859742.1| - 1.9e-57 195.0 0.1 2.3e-57 194.7 0.1 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein MTS PF05175.14 gi|305663455|ref|YP_003859743.1| - 1.4e-10 41.0 0.0 3.1e-10 39.9 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.13 gi|305663455|ref|YP_003859743.1| - 5.6e-09 35.8 0.1 7.2e-09 35.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|305663455|ref|YP_003859743.1| - 1.3e-05 25.8 0.0 2.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|305663455|ref|YP_003859743.1| - 1.6e-05 25.5 0.0 2.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|305663455|ref|YP_003859743.1| - 7.9e-05 22.5 0.0 0.00011 22.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|305663455|ref|YP_003859743.1| - 0.0071 16.2 0.0 0.0084 16.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.11 gi|305663455|ref|YP_003859743.1| - 0.098 12.2 0.1 0.15 11.6 0.1 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_12 PF08242.12 gi|305663455|ref|YP_003859743.1| - 0.098 13.4 0.0 0.19 12.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|305663455|ref|YP_003859743.1| - 0.17 11.6 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 ECR1_N PF14382.6 gi|305663456|ref|YP_003859744.1| - 1.8e-11 43.6 0.0 3.8e-11 42.6 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|305663456|ref|YP_003859744.1| - 0.00015 22.4 0.3 0.039 14.6 0.0 2.4 1 1 1 2 2 2 1 Exosome component EXOSC1/CSL4 zf-ribbon_3 PF13248.6 gi|305663456|ref|YP_003859744.1| - 0.0021 17.4 3.4 0.046 13.2 3.9 2.2 1 1 1 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|305663456|ref|YP_003859744.1| - 0.0051 16.8 0.3 0.0085 16.1 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon S1 PF00575.23 gi|305663456|ref|YP_003859744.1| - 0.0082 16.5 0.5 0.065 13.6 0.5 2.2 1 1 0 1 1 1 1 S1 RNA binding domain zinc_ribbon_2 PF13240.6 gi|305663456|ref|YP_003859744.1| - 0.014 15.1 2.5 0.033 13.9 2.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|305663456|ref|YP_003859744.1| - 0.018 14.9 0.7 0.1 12.5 0.6 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain CDC24_OB3 PF17244.2 gi|305663456|ref|YP_003859744.1| - 0.019 14.6 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 zf-NADH-PPase PF09297.11 gi|305663456|ref|YP_003859744.1| - 0.029 14.0 2.9 0.071 12.8 2.9 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.12 gi|305663456|ref|YP_003859744.1| - 0.051 13.8 0.7 0.094 12.9 0.7 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_RNApol_7kD PF03604.13 gi|305663456|ref|YP_003859744.1| - 0.083 12.6 1.3 0.083 12.6 1.3 1.8 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TackOD1 PF18551.1 gi|305663456|ref|YP_003859744.1| - 0.11 12.2 0.2 0.16 11.6 0.2 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|305663456|ref|YP_003859744.1| - 0.11 12.5 0.2 0.17 11.9 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons RNA_POL_M_15KD PF02150.16 gi|305663456|ref|YP_003859744.1| - 0.31 11.0 1.5 0.57 10.1 1.5 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.6 gi|305663456|ref|YP_003859744.1| - 0.41 10.6 2.4 2.7 8.0 2.4 2.1 1 1 1 2 2 2 0 Nudix N-terminal DUF2067 PF09840.9 gi|305663457|ref|YP_003859745.1| - 9.6e-23 80.7 0.5 1.1e-22 80.5 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) RNA_pol_L_2 PF13656.6 gi|305663458|ref|YP_003859746.1| - 6.1e-18 64.4 0.1 8.7e-18 63.9 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|305663458|ref|YP_003859746.1| - 0.022 14.2 0.0 0.051 13.0 0.0 1.7 1 1 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Sigma54_activ_2 PF14532.6 gi|305663458|ref|YP_003859746.1| - 0.041 14.0 0.0 0.077 13.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF3926 PF13080.6 gi|305663458|ref|YP_003859746.1| - 0.088 12.8 0.1 0.66 10.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3926) PP2C_2 PF13672.6 gi|305663458|ref|YP_003859746.1| - 0.12 12.0 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein phosphatase 2C GatB_N PF02934.15 gi|305663460|ref|YP_003859748.1| - 1.3e-99 333.0 0.0 1.9e-99 332.5 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|305663460|ref|YP_003859748.1| - 1.6e-35 122.2 0.2 2.5e-35 121.5 0.2 1.3 1 0 0 1 1 1 1 GatB domain Amidase PF01425.21 gi|305663461|ref|YP_003859749.1| - 7.5e-143 476.7 0.0 8.5e-143 476.6 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 gi|305663462|ref|YP_003859750.1| - 1.6e-09 37.9 0.2 2e-09 37.6 0.2 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Pribosyltran PF00156.27 gi|305663463|ref|YP_003859751.1| - 1.6e-15 57.0 0.0 2.6e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain ERCC3_RAD25_C PF16203.5 gi|305663464|ref|YP_003859752.1| - 4.8e-26 91.5 0.5 1.1e-25 90.2 0.1 1.7 2 0 0 2 2 2 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|305663464|ref|YP_003859752.1| - 4.3e-21 75.6 2.4 8e-21 74.8 0.0 2.3 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|305663464|ref|YP_003859752.1| - 3e-18 66.2 4.1 3.4e-18 66.0 0.4 2.9 3 1 1 4 4 4 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|305663464|ref|YP_003859752.1| - 1.5e-08 34.6 0.1 2.9e-07 30.4 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|305663464|ref|YP_003859752.1| - 3.3e-05 22.8 0.0 0.047 12.4 0.0 2.7 2 1 1 3 3 3 2 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|305663464|ref|YP_003859752.1| - 0.0039 17.5 0.2 0.12 12.6 0.0 2.8 2 2 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|305663464|ref|YP_003859752.1| - 0.027 13.9 0.2 0.11 12.0 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA PF00004.29 gi|305663464|ref|YP_003859752.1| - 0.03 14.8 0.7 0.1 13.0 0.0 2.3 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|305663464|ref|YP_003859752.1| - 0.046 12.8 0.0 0.11 11.6 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_11 PF13086.6 gi|305663464|ref|YP_003859752.1| - 0.15 11.8 0.2 16 5.2 0.0 2.7 3 0 0 3 3 3 0 AAA domain DUF3887 PF13026.6 gi|305663466|ref|YP_003859754.1| - 0.00021 22.1 0.3 0.00025 21.8 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) YhfC PF10086.9 gi|305663467|ref|YP_003859755.1| - 0.0052 16.2 2.9 0.006 16.0 2.9 1.2 1 0 0 1 1 1 1 YhfC intramembrane metalloprotease DUF2207 PF09972.9 gi|305663468|ref|YP_003859756.1| - 6.7 5.3 6.1 7.5 5.2 6.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) AIRS_C PF02769.22 gi|305663469|ref|YP_003859757.1| - 6.7e-21 75.0 0.2 1.2e-20 74.2 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|305663469|ref|YP_003859757.1| - 3.1e-15 56.6 0.2 6e-15 55.7 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain ECF-ribofla_trS PF07155.12 gi|305663470|ref|YP_003859758.1| - 8.7e-22 77.9 21.9 7e-18 65.2 11.2 2.1 1 1 1 2 2 2 2 ECF-type riboflavin transporter, S component Bac_export_2 PF01312.19 gi|305663470|ref|YP_003859758.1| - 1.2 8.2 6.2 1 8.5 5.0 1.4 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family ABC_tran PF00005.27 gi|305663471|ref|YP_003859759.1| - 9.7e-41 139.5 0.0 3.9e-20 72.8 0.0 2.8 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|305663471|ref|YP_003859759.1| - 1.3e-20 74.5 7.3 6.2e-08 32.8 0.0 4.1 2 2 2 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663471|ref|YP_003859759.1| - 5e-16 58.8 4.7 0.0002 20.9 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|305663471|ref|YP_003859759.1| - 3.9e-11 43.3 2.8 0.00068 19.5 0.3 4.0 3 1 1 4 4 4 3 AAA ATPase domain AAA_29 PF13555.6 gi|305663471|ref|YP_003859759.1| - 3e-10 39.7 1.7 0.00025 20.7 0.2 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|305663471|ref|YP_003859759.1| - 3.8e-10 40.6 1.0 1.9e-05 25.3 0.5 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|305663471|ref|YP_003859759.1| - 3.3e-09 37.4 0.0 0.00038 20.9 0.0 2.9 3 0 0 3 3 3 2 AAA ATPase domain AAA_18 PF13238.6 gi|305663471|ref|YP_003859759.1| - 1.7e-07 31.8 0.0 0.05 14.2 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|305663471|ref|YP_003859759.1| - 2.5e-07 31.1 0.8 0.024 14.9 0.0 3.2 3 1 0 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|305663471|ref|YP_003859759.1| - 2.7e-07 30.5 0.0 0.0095 15.7 0.0 2.8 3 0 0 3 3 3 2 AAA domain NACHT PF05729.12 gi|305663471|ref|YP_003859759.1| - 3.2e-07 30.4 0.8 0.0013 18.7 0.0 2.7 2 1 0 2 2 2 2 NACHT domain RsgA_GTPase PF03193.16 gi|305663471|ref|YP_003859759.1| - 8.2e-07 29.1 0.0 0.05 13.5 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_33 PF13671.6 gi|305663471|ref|YP_003859759.1| - 1.1e-06 28.9 0.0 0.095 12.9 0.0 3.3 2 2 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|305663471|ref|YP_003859759.1| - 1.4e-05 25.4 0.0 0.0094 16.3 0.0 2.6 2 0 0 2 2 2 1 RNA helicase T2SSE PF00437.20 gi|305663471|ref|YP_003859759.1| - 5.5e-05 22.4 0.0 0.24 10.4 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein SbcCD_C PF13558.6 gi|305663471|ref|YP_003859759.1| - 5.8e-05 23.3 0.1 0.42 10.9 0.2 3.8 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 gi|305663471|ref|YP_003859759.1| - 7.1e-05 22.8 0.1 0.087 12.7 0.0 2.5 2 1 0 2 2 2 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|305663471|ref|YP_003859759.1| - 7.4e-05 22.8 0.4 0.18 11.7 0.0 3.1 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|305663471|ref|YP_003859759.1| - 0.00014 21.9 2.4 0.089 12.8 0.0 3.6 3 1 0 3 3 3 1 AAA domain AAA PF00004.29 gi|305663471|ref|YP_003859759.1| - 0.00015 22.2 0.0 0.9 10.0 0.0 3.0 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|305663471|ref|YP_003859759.1| - 0.00017 21.1 0.0 0.19 11.2 0.0 2.6 3 0 0 3 3 2 1 PhoH-like protein PRK PF00485.18 gi|305663471|ref|YP_003859759.1| - 0.00017 21.4 0.0 0.068 12.9 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family cobW PF02492.19 gi|305663471|ref|YP_003859759.1| - 0.0002 21.0 0.4 0.39 10.3 0.3 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.18 gi|305663471|ref|YP_003859759.1| - 0.00022 20.7 0.3 0.011 15.1 0.1 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_19 PF13245.6 gi|305663471|ref|YP_003859759.1| - 0.00045 20.6 0.0 0.35 11.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain G-alpha PF00503.20 gi|305663471|ref|YP_003859759.1| - 0.00068 18.9 0.0 0.73 8.9 0.0 2.3 2 0 0 2 2 2 2 G-protein alpha subunit AAA_24 PF13479.6 gi|305663471|ref|YP_003859759.1| - 0.00076 19.3 1.3 1.2 8.8 0.1 3.1 3 0 0 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|305663471|ref|YP_003859759.1| - 0.0008 18.7 0.8 0.62 9.2 0.0 2.5 3 0 0 3 3 2 2 NB-ARC domain MMR_HSR1 PF01926.23 gi|305663471|ref|YP_003859759.1| - 0.0015 18.6 0.8 1.3 9.2 0.2 2.7 3 0 0 3 3 2 1 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|305663471|ref|YP_003859759.1| - 0.0019 18.2 0.5 0.54 10.1 0.0 2.8 3 0 0 3 3 2 1 NTPase TsaE PF02367.17 gi|305663471|ref|YP_003859759.1| - 0.0021 18.1 0.0 1.4 8.9 0.0 2.8 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|305663471|ref|YP_003859759.1| - 0.0033 17.4 0.2 0.5 10.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MobB PF03205.14 gi|305663471|ref|YP_003859759.1| - 0.0034 17.3 0.4 0.42 10.5 0.1 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.21 gi|305663471|ref|YP_003859759.1| - 0.0038 16.6 0.0 0.93 8.8 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF87 PF01935.17 gi|305663471|ref|YP_003859759.1| - 0.0042 17.2 4.2 0.22 11.6 0.2 3.0 3 0 0 3 3 3 1 Helicase HerA, central domain ABC_ATPase PF09818.9 gi|305663471|ref|YP_003859759.1| - 0.0046 15.8 0.3 1.2 7.8 0.0 2.5 3 0 0 3 3 3 1 Predicted ATPase of the ABC class AAA_28 PF13521.6 gi|305663471|ref|YP_003859759.1| - 0.0051 17.1 3.3 2.6 8.3 1.3 2.7 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|305663471|ref|YP_003859759.1| - 0.0055 16.6 0.8 0.16 11.8 0.0 2.4 2 0 0 2 2 2 1 Adenylylsulphate kinase Thymidylate_kin PF02223.17 gi|305663471|ref|YP_003859759.1| - 0.0064 16.2 0.0 0.76 9.4 0.0 3.1 3 0 0 3 3 3 1 Thymidylate kinase AAA_11 PF13086.6 gi|305663471|ref|YP_003859759.1| - 0.007 16.2 0.0 0.52 10.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain PIF1 PF05970.14 gi|305663471|ref|YP_003859759.1| - 0.0078 15.4 0.0 0.41 9.8 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase Viral_helicase1 PF01443.18 gi|305663471|ref|YP_003859759.1| - 0.0082 15.9 0.9 0.97 9.1 0.0 2.5 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase ATP_bind_1 PF03029.17 gi|305663471|ref|YP_003859759.1| - 0.0083 15.9 0.4 4.1 7.1 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|305663471|ref|YP_003859759.1| - 0.011 15.0 0.1 4.8 6.4 0.0 2.6 3 0 0 3 3 3 0 Zeta toxin AAA_25 PF13481.6 gi|305663471|ref|YP_003859759.1| - 0.012 15.2 0.0 4.8 6.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|305663471|ref|YP_003859759.1| - 0.018 14.7 1.5 0.13 11.9 0.1 2.2 2 0 0 2 2 2 0 Cytidylate kinase Pox_A32 PF04665.12 gi|305663471|ref|YP_003859759.1| - 0.025 14.1 0.1 0.52 9.7 0.0 2.4 2 0 0 2 2 2 0 Poxvirus A32 protein MeaB PF03308.16 gi|305663471|ref|YP_003859759.1| - 0.033 13.2 0.0 1.8 7.5 0.0 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_27 PF13514.6 gi|305663471|ref|YP_003859759.1| - 0.034 13.8 0.0 5.9 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|305663471|ref|YP_003859759.1| - 0.047 13.2 0.0 4.7 6.7 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region ATPase PF06745.13 gi|305663471|ref|YP_003859759.1| - 0.049 13.0 0.8 5.3 6.3 0.0 2.9 4 0 0 4 4 2 0 KaiC AAA_17 PF13207.6 gi|305663471|ref|YP_003859759.1| - 0.054 13.9 2.0 2.3 8.7 0.0 2.7 3 0 0 3 3 2 0 AAA domain IstB_IS21 PF01695.17 gi|305663471|ref|YP_003859759.1| - 0.056 13.2 1.2 28 4.4 0.0 3.6 4 0 0 4 4 4 0 IstB-like ATP binding protein AAA_PrkA PF08298.11 gi|305663471|ref|YP_003859759.1| - 0.059 12.3 0.0 0.14 11.1 0.0 1.6 2 0 0 2 2 1 0 PrkA AAA domain CbiA PF01656.23 gi|305663471|ref|YP_003859759.1| - 0.074 13.1 0.7 3.9 7.6 0.1 2.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain TrwB_AAD_bind PF10412.9 gi|305663471|ref|YP_003859759.1| - 0.079 11.8 0.1 0.64 8.9 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain TniB PF05621.11 gi|305663471|ref|YP_003859759.1| - 0.086 12.2 0.6 36 3.7 0.0 3.2 3 0 0 3 3 3 0 Bacterial TniB protein Sigma54_activat PF00158.26 gi|305663471|ref|YP_003859759.1| - 0.1 12.3 0.0 7.9 6.2 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain ATP-synt_ab PF00006.25 gi|305663471|ref|YP_003859759.1| - 0.11 12.2 0.1 6.1 6.4 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Adeno_IVa2 PF02456.15 gi|305663471|ref|YP_003859759.1| - 0.11 11.3 0.7 10 4.8 0.0 2.3 2 0 0 2 2 2 0 Adenovirus IVa2 protein SRP54 PF00448.22 gi|305663471|ref|YP_003859759.1| - 0.16 11.6 0.0 18 4.9 0.1 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Roc PF08477.13 gi|305663471|ref|YP_003859759.1| - 0.2 11.9 0.4 9.8 6.4 0.2 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Flavi_M PF01004.19 gi|305663472|ref|YP_003859760.1| - 3.9 7.3 5.6 2.9 7.7 0.3 2.8 3 0 0 3 3 3 0 Flavivirus envelope glycoprotein M DUF2207 PF09972.9 gi|305663472|ref|YP_003859760.1| - 6.9 5.3 12.8 1.1 7.9 0.0 2.1 1 1 0 2 2 2 0 Predicted membrane protein (DUF2207) PBP PF01161.20 gi|305663473|ref|YP_003859761.1| - 2e-28 99.3 0.0 2.8e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Radical_SAM PF04055.21 gi|305663474|ref|YP_003859762.1| - 4.2e-14 53.3 0.0 1e-13 52.0 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily OrfB_Zn_ribbon PF07282.11 gi|305663474|ref|YP_003859762.1| - 0.0021 17.9 0.1 0.0021 17.9 0.1 2.2 3 0 0 3 3 1 1 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|305663474|ref|YP_003859762.1| - 0.0026 17.8 1.6 0.48 10.5 0.3 3.1 2 0 0 2 2 2 1 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_2 PF13240.6 gi|305663474|ref|YP_003859762.1| - 0.017 14.8 9.3 1.4 8.7 0.1 3.7 3 0 0 3 3 3 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|305663474|ref|YP_003859762.1| - 0.025 14.5 5.6 5.5 7.0 0.2 3.5 3 0 0 3 3 3 0 SprT-like zinc ribbon domain zf_UBZ PF18439.1 gi|305663474|ref|YP_003859762.1| - 0.034 13.7 5.1 2 8.1 0.1 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|305663474|ref|YP_003859762.1| - 0.04 13.9 1.4 0.04 13.9 1.4 3.2 4 0 0 4 4 4 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|305663474|ref|YP_003859762.1| - 0.058 13.4 0.1 0.058 13.4 0.1 3.2 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|305663474|ref|YP_003859762.1| - 0.089 12.2 13.7 0.14 11.6 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain Desulfoferrod_N PF06397.12 gi|305663474|ref|YP_003859762.1| - 0.11 12.1 6.0 0.63 9.7 0.1 3.7 4 0 0 4 4 4 0 Desulfoferrodoxin, N-terminal domain Rpr2 PF04032.16 gi|305663474|ref|YP_003859762.1| - 0.21 11.9 0.6 0.35 11.2 0.6 1.7 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain TF_Zn_Ribbon PF08271.12 gi|305663474|ref|YP_003859762.1| - 0.23 11.0 7.4 0.23 11.0 1.3 3.4 3 1 1 4 4 4 0 TFIIB zinc-binding ZZ PF00569.17 gi|305663474|ref|YP_003859762.1| - 0.24 11.2 3.9 38 4.2 0.0 3.5 3 0 0 3 3 3 0 Zinc finger, ZZ type Zn-ribbon_8 PF09723.10 gi|305663474|ref|YP_003859762.1| - 0.24 11.5 0.0 0.24 11.5 0.0 3.4 4 0 0 4 4 3 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|305663474|ref|YP_003859762.1| - 0.48 10.4 8.6 7.3 6.6 0.0 3.7 4 0 0 4 4 3 0 Nudix N-terminal RNA_POL_M_15KD PF02150.16 gi|305663474|ref|YP_003859762.1| - 1.5 8.7 10.6 2.7 7.9 0.3 3.9 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit CpXC PF14353.6 gi|305663474|ref|YP_003859762.1| - 4.1 7.5 5.7 5.9 7.0 0.1 2.8 2 1 1 3 3 3 0 CpXC protein zf-H2C2_2 PF13465.6 gi|305663474|ref|YP_003859762.1| - 5.9 7.5 6.8 45 4.7 0.1 3.2 3 0 0 3 3 3 0 Zinc-finger double domain zinc_ribbon_4 PF13717.6 gi|305663474|ref|YP_003859762.1| - 9.4 6.2 11.9 2.2 8.3 2.5 3.6 3 1 0 3 3 3 0 zinc-ribbon domain TrmO PF01980.16 gi|305663475|ref|YP_003859763.1| - 7.4e-27 93.9 0.0 1.3e-26 93.2 0.0 1.3 1 1 0 1 1 1 1 tRNA-methyltransferase O Thymidylate_kin PF02223.17 gi|305663476|ref|YP_003859764.1| - 3.8e-41 140.8 0.0 4.4e-41 140.6 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|305663476|ref|YP_003859764.1| - 2.3e-06 28.0 0.0 2.8e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|305663476|ref|YP_003859764.1| - 0.00053 20.5 0.0 0.0012 19.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|305663476|ref|YP_003859764.1| - 0.00065 19.6 0.5 0.019 14.8 0.2 2.7 1 1 1 2 2 2 1 Deoxynucleoside kinase APS_kinase PF01583.20 gi|305663476|ref|YP_003859764.1| - 0.0045 16.9 0.0 0.007 16.3 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase ATPase PF06745.13 gi|305663476|ref|YP_003859764.1| - 0.013 14.8 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 KaiC PPK2 PF03976.14 gi|305663476|ref|YP_003859764.1| - 0.015 14.8 0.0 0.11 12.0 0.0 2.0 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) AAA_16 PF13191.6 gi|305663476|ref|YP_003859764.1| - 0.016 15.6 0.0 0.021 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|305663476|ref|YP_003859764.1| - 0.02 15.1 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arf PF00025.21 gi|305663476|ref|YP_003859764.1| - 0.027 13.9 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family Zeta_toxin PF06414.12 gi|305663476|ref|YP_003859764.1| - 0.027 13.7 0.1 0.12 11.7 0.0 2.0 3 0 0 3 3 3 0 Zeta toxin AAA_17 PF13207.6 gi|305663476|ref|YP_003859764.1| - 0.041 14.3 0.0 0.24 11.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|305663476|ref|YP_003859764.1| - 0.097 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|305663476|ref|YP_003859764.1| - 0.099 12.6 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MobB PF03205.14 gi|305663476|ref|YP_003859764.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|305663476|ref|YP_003859764.1| - 0.12 12.6 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|305663476|ref|YP_003859764.1| - 0.16 10.9 0.0 0.22 10.5 0.0 1.1 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Torsin PF06309.11 gi|305663476|ref|YP_003859764.1| - 0.18 11.9 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 Torsin SRP54 PF00448.22 gi|305663476|ref|YP_003859764.1| - 0.2 11.2 0.0 0.27 10.8 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|305663476|ref|YP_003859764.1| - 0.25 10.5 0.1 0.35 10.0 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain YvrJ PF12841.7 gi|305663477|ref|YP_003859765.1| - 0.29 10.7 2.6 4 7.1 0.3 2.5 2 0 0 2 2 2 0 YvrJ protein family Kelch_6 PF13964.6 gi|305663478|ref|YP_003859766.1| - 0.0014 18.8 0.2 14 6.2 0.1 4.0 3 0 0 3 3 3 2 Kelch motif Ad_cyc_g-alpha PF08509.11 gi|305663478|ref|YP_003859766.1| - 0.42 10.4 1.0 14 5.5 0.0 2.3 2 0 0 2 2 2 0 Adenylate cyclase G-alpha binding domain Kelch_1 PF01344.25 gi|305663478|ref|YP_003859766.1| - 1.2 8.8 6.2 18 5.0 0.0 3.6 3 0 0 3 3 3 0 Kelch motif ABC2_membrane PF01061.24 gi|305663479|ref|YP_003859767.1| - 1.4e-32 112.9 16.5 2.2e-32 112.2 16.5 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|305663479|ref|YP_003859767.1| - 1.1e-18 67.5 27.1 1.4e-18 67.2 27.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|305663479|ref|YP_003859767.1| - 3.1e-08 33.3 17.6 4e-08 32.9 17.6 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_6 PF06182.11 gi|305663479|ref|YP_003859767.1| - 0.31 10.8 24.0 0.47 10.2 21.9 2.3 1 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|305663480|ref|YP_003859768.1| - 3.7e-29 102.0 0.0 7.1e-29 101.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663480|ref|YP_003859768.1| - 2.1e-13 50.8 0.0 1e-07 32.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|305663480|ref|YP_003859768.1| - 0.0018 18.8 0.5 0.0043 17.6 0.1 1.7 2 0 0 2 2 2 1 AAA domain DUF4162 PF13732.6 gi|305663480|ref|YP_003859768.1| - 0.0023 18.6 0.2 0.0066 17.1 0.2 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|305663480|ref|YP_003859768.1| - 0.0084 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|305663480|ref|YP_003859768.1| - 0.0092 15.4 0.0 0.71 9.3 0.0 2.4 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_28 PF13521.6 gi|305663480|ref|YP_003859768.1| - 0.018 15.3 0.1 0.058 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|305663480|ref|YP_003859768.1| - 0.022 14.5 0.0 0.085 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|305663480|ref|YP_003859768.1| - 0.034 14.5 0.0 0.06 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|305663480|ref|YP_003859768.1| - 0.067 13.5 0.0 0.22 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|305663480|ref|YP_003859768.1| - 0.084 10.4 0.2 0.12 9.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|305663480|ref|YP_003859768.1| - 0.089 11.4 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain PhdYeFM_antitox PF02604.19 gi|305663480|ref|YP_003859768.1| - 0.093 12.5 0.2 0.18 11.6 0.2 1.5 1 0 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system RNA_helicase PF00910.22 gi|305663480|ref|YP_003859768.1| - 0.12 12.8 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|305663480|ref|YP_003859768.1| - 0.16 12.1 0.0 0.23 11.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain Alpha-L-AF_C PF06964.12 gi|305663481|ref|YP_003859769.1| - 3.5e-34 118.4 0.1 5e-34 117.8 0.1 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminal domain Glyco_hydro_44 PF12891.7 gi|305663481|ref|YP_003859769.1| - 0.0037 17.2 2.3 0.089 12.7 2.5 2.5 1 1 0 1 1 1 1 Glycoside hydrolase family 44 CNDH2_N PF06278.11 gi|305663481|ref|YP_003859769.1| - 0.0082 16.4 0.2 0.017 15.4 0.2 1.5 1 0 0 1 1 1 1 Condensin II complex subunit CAP-H2 or CNDH2, N-terminal Glyco_hydro_79n PF03662.14 gi|305663481|ref|YP_003859769.1| - 0.016 14.2 0.2 0.025 13.5 0.2 1.4 1 1 0 1 1 1 0 Glycosyl hydrolase family 79, N-terminal domain DUF5111 PF17138.4 gi|305663481|ref|YP_003859769.1| - 0.049 13.5 3.4 0.067 13.0 1.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5111) DeoC PF01791.9 gi|305663482|ref|YP_003859770.1| - 1.3e-08 34.7 0.1 1.8e-08 34.3 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Glu_synthase PF01645.17 gi|305663482|ref|YP_003859770.1| - 0.013 14.7 0.2 0.022 13.9 0.2 1.4 1 0 0 1 1 1 0 Conserved region in glutamate synthase HSP20 PF00011.21 gi|305663483|ref|YP_003859771.1| - 0.00028 21.0 0.0 0.00037 20.6 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|305663483|ref|YP_003859771.1| - 0.029 13.9 0.0 0.049 13.2 0.0 1.4 1 1 0 1 1 1 0 HSP20-like domain found in ArsA SHE3 PF17078.5 gi|305663483|ref|YP_003859771.1| - 0.18 11.5 0.2 4.2 7.0 0.0 2.0 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 PAC2 PF09754.9 gi|305663484|ref|YP_003859772.1| - 5.6e-31 108.2 0.0 6.5e-31 108.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family OAM_dimer PF16554.5 gi|305663484|ref|YP_003859772.1| - 0.16 12.5 0.1 3.1 8.3 0.0 2.7 3 0 0 3 3 3 0 Dimerisation domain of d-ornithine 4,5-aminomutase GYD PF08734.11 gi|305663484|ref|YP_003859772.1| - 0.17 11.8 0.0 0.48 10.4 0.0 1.7 2 0 0 2 2 2 0 GYD domain Aminotran_4 PF01063.19 gi|305663485|ref|YP_003859773.1| - 7e-56 189.6 0.0 8.5e-56 189.3 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV MobB PF03205.14 gi|305663486|ref|YP_003859774.1| - 3.5e-13 49.6 0.1 4.9e-13 49.1 0.1 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 gi|305663486|ref|YP_003859774.1| - 1.6e-07 30.8 0.6 3e-07 30.0 0.6 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster CbiA PF01656.23 gi|305663486|ref|YP_003859774.1| - 0.038 14.0 0.0 0.045 13.8 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain VirC1 PF07015.11 gi|305663486|ref|YP_003859774.1| - 0.11 11.8 0.0 0.79 9.0 0.0 2.0 2 0 0 2 2 2 0 VirC1 protein adh_short_C2 PF13561.6 gi|305663487|ref|YP_003859775.1| - 3.8e-68 229.5 0.0 4.7e-68 229.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|305663487|ref|YP_003859775.1| - 1.3e-51 174.8 0.0 1.7e-51 174.4 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|305663487|ref|YP_003859775.1| - 2.1e-08 34.3 0.0 3.9e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|305663487|ref|YP_003859775.1| - 0.006 16.1 0.1 0.013 15.0 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 gi|305663487|ref|YP_003859775.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) APOBEC_N PF08210.11 gi|305663487|ref|YP_003859775.1| - 0.26 11.1 0.0 0.41 10.5 0.0 1.2 1 0 0 1 1 1 0 APOBEC-like N-terminal domain PepSY PF03413.19 gi|305663488|ref|YP_003859776.1| - 0.0015 19.1 0.2 0.039 14.5 0.0 2.9 2 0 0 2 2 2 1 Peptidase propeptide and YPEB domain DHR10 PF18595.1 gi|305663488|ref|YP_003859776.1| - 0.025 14.6 2.1 0.04 14.0 2.1 1.2 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain Bacillus_HBL PF05791.11 gi|305663488|ref|YP_003859776.1| - 0.14 11.9 0.2 0.24 11.2 0.2 1.3 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) APG6_N PF17675.1 gi|305663488|ref|YP_003859776.1| - 0.16 12.5 1.4 0.24 11.9 1.4 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region Ni_hydr_CYTB PF01292.20 gi|305663488|ref|YP_003859776.1| - 0.83 9.2 5.8 1.4 8.5 5.8 1.3 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 Med4 PF10018.9 gi|305663488|ref|YP_003859776.1| - 1 9.0 3.5 1.6 8.4 3.5 1.2 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 SpoIIM PF01944.17 gi|305663488|ref|YP_003859776.1| - 1.2 9.2 11.4 2.3 8.2 11.4 1.4 1 0 0 1 1 1 0 Stage II sporulation protein M Cyclophil_like PF04126.13 gi|305663489|ref|YP_003859777.1| - 1.1e-40 138.2 0.1 1.2e-40 138.0 0.1 1.0 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 gi|305663489|ref|YP_003859777.1| - 8.1e-06 25.8 0.0 9e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin-like family Proton_antipo_M PF00361.20 gi|305663490|ref|YP_003859778.1| - 2.4e-31 109.0 31.1 2.4e-31 109.0 31.1 3.4 3 1 0 3 3 3 1 Proton-conducting membrane transporter MnhB PF04039.13 gi|305663491|ref|YP_003859779.1| - 1.3e-17 64.3 10.5 1.3e-17 64.3 10.5 2.4 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.24 gi|305663492|ref|YP_003859780.1| - 3.6e-17 61.9 5.2 4.5e-17 61.6 5.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4013 PF13197.6 gi|305663492|ref|YP_003859780.1| - 0.053 13.3 5.1 0.11 12.3 5.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4013) Proton_antipo_M PF00361.20 gi|305663493|ref|YP_003859781.1| - 2.9e-49 167.9 26.4 2.9e-49 167.9 26.4 2.4 2 0 0 2 2 2 2 Proton-conducting membrane transporter ATPase_2 PF01637.18 gi|305663494|ref|YP_003859782.1| - 1.1e-53 182.6 0.1 2.2e-53 181.6 0.0 1.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|305663494|ref|YP_003859782.1| - 7.1e-05 22.1 0.0 0.00021 20.6 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.6 gi|305663494|ref|YP_003859782.1| - 0.00012 22.5 0.0 0.00027 21.3 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|305663494|ref|YP_003859782.1| - 0.0032 17.2 0.0 0.0051 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|305663494|ref|YP_003859782.1| - 0.021 14.5 0.0 0.037 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|305663494|ref|YP_003859782.1| - 0.029 14.9 0.1 0.1 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|305663494|ref|YP_003859782.1| - 0.046 14.2 0.1 0.12 12.8 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DAP3 PF10236.9 gi|305663494|ref|YP_003859782.1| - 0.048 12.8 0.0 0.08 12.1 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_22 PF13401.6 gi|305663494|ref|YP_003859782.1| - 0.072 13.4 0.0 0.14 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|305663494|ref|YP_003859782.1| - 0.075 12.9 0.0 0.46 10.3 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein Mg_chelatase PF01078.21 gi|305663494|ref|YP_003859782.1| - 0.088 12.2 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|305663494|ref|YP_003859782.1| - 0.13 12.1 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|305663494|ref|YP_003859782.1| - 0.14 12.5 0.0 0.42 11.0 0.0 1.8 2 0 0 2 2 2 0 RNA helicase PIN PF01850.21 gi|305663496|ref|YP_003859784.1| - 1.1e-17 64.7 0.1 1.3e-17 64.4 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|305663496|ref|YP_003859784.1| - 0.07 13.9 0.0 0.094 13.5 0.0 1.2 1 0 0 1 1 1 0 PIN domain MazE_antitoxin PF04014.18 gi|305663497|ref|YP_003859785.1| - 6.1e-11 42.0 2.3 1e-10 41.3 2.3 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF104 PF01954.16 gi|305663497|ref|YP_003859785.1| - 0.0054 17.1 2.2 0.0074 16.7 1.3 1.7 1 1 1 2 2 2 1 Protein of unknown function DUF104 MraZ PF02381.18 gi|305663497|ref|YP_003859785.1| - 0.018 15.0 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like Lip_prot_lig_C PF10437.9 gi|305663497|ref|YP_003859785.1| - 0.033 14.2 0.2 0.035 14.1 0.2 1.2 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus NTP_transferase PF00483.23 gi|305663498|ref|YP_003859786.1| - 9.6e-33 113.8 0.0 1.2e-32 113.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|305663498|ref|YP_003859786.1| - 6.5e-13 47.8 17.8 0.00023 20.8 0.0 4.5 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|305663498|ref|YP_003859786.1| - 1.1e-09 38.9 0.0 1.4e-09 38.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|305663498|ref|YP_003859786.1| - 4.5e-06 26.3 7.1 0.034 13.9 0.0 4.2 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|305663498|ref|YP_003859786.1| - 0.05 11.7 0.1 0.075 11.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Ribosomal_S3Ae PF01015.18 gi|305663499|ref|YP_003859787.1| - 1.5e-62 210.8 1.0 1.7e-62 210.6 1.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Pcc1 PF09341.10 gi|305663500|ref|YP_003859788.1| - 2.6e-07 30.7 0.0 3.1e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribosomal_S13_N PF08069.12 gi|305663502|ref|YP_003859790.1| - 8.2e-21 73.8 0.1 1.6e-20 72.9 0.1 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|305663502|ref|YP_003859790.1| - 3.3e-15 56.0 0.1 4.9e-15 55.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ham1p_like PF01725.16 gi|305663503|ref|YP_003859791.1| - 7.6e-53 179.2 0.0 8.5e-53 179.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Pkinase PF00069.25 gi|305663504|ref|YP_003859792.1| - 1.7e-12 47.3 0.4 2.7e-12 46.6 0.4 1.3 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.22 gi|305663504|ref|YP_003859792.1| - 1.8e-12 47.3 0.0 2.9e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|305663504|ref|YP_003859792.1| - 2.5e-09 37.4 0.0 4.1e-06 26.9 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 gi|305663504|ref|YP_003859792.1| - 4.7e-09 35.9 0.0 6.7e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|305663504|ref|YP_003859792.1| - 1.5e-07 31.0 0.1 2.6e-07 30.2 0.1 1.4 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Choline_kinase PF01633.20 gi|305663504|ref|YP_003859792.1| - 0.00012 21.8 0.5 0.00043 19.9 0.5 1.8 1 1 1 2 2 2 1 Choline/ethanolamine kinase EcKinase PF02958.20 gi|305663504|ref|YP_003859792.1| - 0.00019 20.8 0.4 0.00081 18.8 0.7 1.7 1 1 1 2 2 2 1 Ecdysteroid kinase DUF1679 PF07914.11 gi|305663504|ref|YP_003859792.1| - 0.014 14.3 0.7 1.4 7.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1679) Pkinase_fungal PF17667.1 gi|305663504|ref|YP_003859792.1| - 0.021 13.6 0.5 0.031 13.0 0.5 1.2 1 0 0 1 1 1 0 Fungal protein kinase Peptidase_M22 PF00814.25 gi|305663505|ref|YP_003859793.1| - 1.1e-71 241.8 0.0 1.3e-71 241.5 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family AnmK PF03702.14 gi|305663505|ref|YP_003859793.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Anhydro-N-acetylmuramic acid kinase Ribosomal_S27 PF01599.19 gi|305663506|ref|YP_003859794.1| - 3.6e-10 39.8 3.3 4.5e-10 39.5 3.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.7 gi|305663506|ref|YP_003859794.1| - 0.00059 19.8 3.1 0.00077 19.4 3.1 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain GFA PF04828.14 gi|305663506|ref|YP_003859794.1| - 0.0048 17.2 0.5 0.23 11.8 0.2 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.11 gi|305663506|ref|YP_003859794.1| - 0.006 16.2 1.4 0.053 13.2 0.1 2.1 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain RNHCP PF12647.7 gi|305663506|ref|YP_003859794.1| - 0.0061 16.5 0.5 0.0074 16.2 0.5 1.1 1 0 0 1 1 1 1 RNHCP domain OrfB_Zn_ribbon PF07282.11 gi|305663506|ref|YP_003859794.1| - 0.0083 16.0 1.4 0.012 15.6 1.4 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L37ae PF01780.19 gi|305663506|ref|YP_003859794.1| - 0.0084 16.2 0.7 0.01 15.9 0.7 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family zf_UBZ PF18439.1 gi|305663506|ref|YP_003859794.1| - 0.011 15.3 0.6 1 9.0 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger RNA_POL_M_15KD PF02150.16 gi|305663506|ref|YP_003859794.1| - 0.018 14.9 0.4 0.029 14.3 0.4 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit PriA_CRR PF18319.1 gi|305663506|ref|YP_003859794.1| - 0.019 14.9 1.8 0.053 13.5 1.8 1.8 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain C1_1 PF00130.22 gi|305663506|ref|YP_003859794.1| - 0.021 14.7 0.6 0.026 14.4 0.6 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FAM72 PF14976.6 gi|305663506|ref|YP_003859794.1| - 0.022 14.9 0.2 0.024 14.8 0.2 1.1 1 0 0 1 1 1 0 FAM72 protein Zn_ribbon_recom PF13408.6 gi|305663506|ref|YP_003859794.1| - 0.03 14.8 4.8 0.045 14.3 4.8 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Lar_restr_allev PF14354.6 gi|305663506|ref|YP_003859794.1| - 0.037 14.4 0.6 0.046 14.1 0.6 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.6 gi|305663506|ref|YP_003859794.1| - 0.049 13.6 3.4 0.11 12.5 3.4 1.6 1 1 0 1 1 1 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|305663506|ref|YP_003859794.1| - 0.061 12.9 1.1 0.15 11.6 0.1 2.2 2 1 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|305663506|ref|YP_003859794.1| - 0.063 14.0 5.7 0.23 12.1 0.6 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf_C2H2_10 PF18414.1 gi|305663506|ref|YP_003859794.1| - 0.085 12.4 1.1 2.8 7.5 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger Ribosomal_S24e PF01282.19 gi|305663507|ref|YP_003859795.1| - 1.1e-18 67.0 0.1 2.7e-18 65.7 0.0 1.6 1 1 1 2 2 2 1 Ribosomal protein S24e NLE PF08154.12 gi|305663507|ref|YP_003859795.1| - 0.09 13.3 0.1 0.2 12.2 0.1 1.5 1 1 1 2 2 2 0 NLE (NUC135) domain Spt4 PF06093.13 gi|305663508|ref|YP_003859796.1| - 1.8e-16 60.0 0.3 2.2e-16 59.7 0.3 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|305663508|ref|YP_003859796.1| - 0.0012 18.9 1.1 0.0015 18.5 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|305663508|ref|YP_003859796.1| - 0.0017 18.4 2.9 0.0026 17.8 2.9 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|305663508|ref|YP_003859796.1| - 0.0072 15.8 0.4 0.013 15.0 0.0 1.6 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_15 PF17032.5 gi|305663508|ref|YP_003859796.1| - 0.021 15.5 0.8 0.032 15.0 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbon family zf-RRN7 PF11781.8 gi|305663508|ref|YP_003859796.1| - 0.032 13.9 0.3 0.065 12.9 0.3 1.5 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TackOD1 PF18551.1 gi|305663508|ref|YP_003859796.1| - 0.058 13.1 0.4 0.069 12.8 0.4 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Tna_leader PF08053.11 gi|305663509|ref|YP_003859797.1| - 0.017 15.0 0.3 0.057 13.4 0.3 1.9 1 0 0 1 1 1 0 Tryptophanase operon leader peptide DUF3930 PF13067.6 gi|305663509|ref|YP_003859797.1| - 0.045 14.0 0.6 0.15 12.3 0.6 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3930) PqqD PF05402.12 gi|305663510|ref|YP_003859798.1| - 4.9e-11 42.8 0.9 6.5e-11 42.4 0.9 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF4889 PF16230.5 gi|305663510|ref|YP_003859798.1| - 0.14 12.4 1.2 16 5.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4889) tRNA_anti-codon PF01336.25 gi|305663511|ref|YP_003859799.1| - 4.8e-06 26.5 0.2 6.5e-06 26.0 0.2 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|305663511|ref|YP_003859799.1| - 0.029 14.3 0.1 0.04 13.8 0.1 1.2 1 0 0 1 1 1 0 Replication protein A OB domain DUF2283 PF10049.9 gi|305663512|ref|YP_003859800.1| - 3.3e-08 33.6 1.6 4.9e-08 33.1 1.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF3297 PF11730.8 gi|305663512|ref|YP_003859800.1| - 0.028 14.3 0.0 0.056 13.3 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3297) PhoU PF01895.19 gi|305663513|ref|YP_003859801.1| - 1.6e-05 25.3 7.4 1.7e-05 25.2 0.2 2.9 3 0 0 3 3 3 1 PhoU domain MazE_antitoxin PF04014.18 gi|305663513|ref|YP_003859801.1| - 2.6e-05 24.0 0.2 6.4e-05 22.8 0.2 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin ASCH PF04266.14 gi|305663514|ref|YP_003859802.1| - 1.4e-15 57.8 0.2 2.6e-15 56.9 0.2 1.4 1 0 0 1 1 1 1 ASCH domain PRD PF00874.20 gi|305663514|ref|YP_003859802.1| - 0.1 12.9 2.5 0.48 10.7 0.3 2.6 2 1 0 2 2 2 0 PRD domain KH_1 PF00013.29 gi|305663515|ref|YP_003859803.1| - 1.1e-13 50.8 2.1 4.5e-06 26.4 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|305663515|ref|YP_003859803.1| - 0.0001 22.1 1.6 0.01 15.7 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|305663515|ref|YP_003859803.1| - 0.00037 20.3 0.4 0.027 14.4 0.0 2.6 2 0 0 2 2 2 1 KH domain KH_8 PF17903.1 gi|305663515|ref|YP_003859803.1| - 0.039 14.0 0.0 0.091 12.9 0.0 1.6 1 0 0 1 1 1 0 Krr1 KH1 domain RIO1 PF01163.22 gi|305663516|ref|YP_003859804.1| - 5.5e-60 202.2 0.2 8.7e-60 201.5 0.2 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|305663516|ref|YP_003859804.1| - 0.00097 18.5 0.2 0.0022 17.4 0.2 1.7 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|305663516|ref|YP_003859804.1| - 0.0022 16.8 0.4 0.0034 16.2 0.4 1.2 1 0 0 1 1 1 1 Fungal protein kinase APH PF01636.23 gi|305663516|ref|YP_003859804.1| - 0.0028 17.6 0.1 0.59 10.0 0.0 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family eIF-1a PF01176.19 gi|305663517|ref|YP_003859805.1| - 3.2e-22 78.1 0.1 4.3e-22 77.7 0.1 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 NMD3 PF04981.13 gi|305663518|ref|YP_003859806.1| - 1.5e-35 122.8 0.9 1.8e-35 122.6 0.9 1.0 1 0 0 1 1 1 1 NMD3 family DUF3016 PF11454.8 gi|305663518|ref|YP_003859806.1| - 0.12 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3016) DZR PF12773.7 gi|305663518|ref|YP_003859806.1| - 1.5 8.9 4.0 15 5.7 2.9 2.6 2 1 0 2 2 2 0 Double zinc ribbon zf-RRN7 PF11781.8 gi|305663518|ref|YP_003859806.1| - 2.3 8.0 6.2 5.4 6.8 0.2 2.9 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF424 PF04242.13 gi|305663519|ref|YP_003859807.1| - 1.6e-16 60.3 0.1 2e-16 60.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MinC_N PF05209.13 gi|305663519|ref|YP_003859807.1| - 0.046 13.7 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Septum formation inhibitor MinC, N-terminal domain eIF-5_eIF-2B PF01873.17 gi|305663520|ref|YP_003859808.1| - 1.7e-29 102.1 0.1 2.1e-29 101.8 0.1 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 zinc_ribbon_6 PF14599.6 gi|305663520|ref|YP_003859808.1| - 0.01 15.8 1.1 0.048 13.7 0.2 2.2 2 0 0 2 2 2 0 Zinc-ribbon DUF35_N PF12172.8 gi|305663520|ref|YP_003859808.1| - 0.036 13.9 0.8 0.28 11.1 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Elf1 PF05129.13 gi|305663520|ref|YP_003859808.1| - 0.044 13.8 0.1 0.071 13.2 0.1 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Rubredoxin_2 PF18073.1 gi|305663520|ref|YP_003859808.1| - 0.045 13.5 3.5 1.5 8.6 0.1 2.5 3 0 0 3 3 3 0 Rubredoxin metal binding domain Lar_restr_allev PF14354.6 gi|305663520|ref|YP_003859808.1| - 0.081 13.3 0.3 0.081 13.3 0.3 1.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar Radical_SAM PF04055.21 gi|305663521|ref|YP_003859809.1| - 1.5e-22 80.7 0.4 4e-22 79.4 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|305663521|ref|YP_003859809.1| - 3.1e-21 75.2 0.1 5.9e-21 74.3 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|305663521|ref|YP_003859809.1| - 1.2e-05 25.2 0.0 2.7e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 TRAM domain NitrOD5 PF11537.8 gi|305663522|ref|YP_003859810.1| - 0.0016 18.6 0.0 0.0017 18.5 0.0 1.1 1 0 0 1 1 1 1 Nitrosopumilus output domain 5 OCD_Mu_crystall PF02423.15 gi|305663525|ref|YP_003859813.1| - 3.8e-116 387.5 0.0 4.3e-116 387.3 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|305663525|ref|YP_003859813.1| - 2.6e-06 27.5 0.0 4.5e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|305663525|ref|YP_003859813.1| - 0.012 16.4 0.0 0.021 15.6 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold GDPD PF03009.17 gi|305663526|ref|YP_003859814.1| - 2.6e-38 132.3 0.1 6.3e-38 131.0 0.1 1.6 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|305663526|ref|YP_003859814.1| - 1.8e-06 28.2 0.3 0.00022 21.5 0.1 2.5 2 0 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|305663526|ref|YP_003859814.1| - 0.081 12.5 0.0 0.13 11.8 0.0 1.5 1 1 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain AsnC_trans_reg PF01037.21 gi|305663528|ref|YP_003859816.1| - 1.8e-14 53.5 1.4 1.9e-14 53.3 1.4 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|305663528|ref|YP_003859816.1| - 5.6e-05 23.1 2.0 7.3e-05 22.8 2.0 1.1 1 0 0 1 1 1 1 NapD protein POTRA_1 PF08478.10 gi|305663528|ref|YP_003859816.1| - 0.0059 16.9 0.1 0.24 11.7 0.1 2.1 2 0 0 2 2 2 1 POTRA domain, FtsQ-type GYD PF08734.11 gi|305663528|ref|YP_003859816.1| - 0.013 15.5 0.1 0.013 15.5 0.1 1.2 1 0 0 1 1 1 0 GYD domain Spore_YhcN_YlaJ PF09580.10 gi|305663528|ref|YP_003859816.1| - 0.048 13.8 0.9 0.057 13.5 0.9 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AstE_AspA PF04952.14 gi|305663530|ref|YP_003859818.1| - 5.1e-08 32.4 0.0 6.2e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family RnfC_N PF13375.6 gi|305663530|ref|YP_003859818.1| - 0.095 12.7 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain UPF0047 PF01894.17 gi|305663531|ref|YP_003859819.1| - 5.6e-35 120.0 0.1 6.5e-35 119.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 HTH_7 PF02796.15 gi|305663532|ref|YP_003859820.1| - 1.1e-05 25.4 0.1 3.6e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|305663532|ref|YP_003859820.1| - 3.5e-05 23.5 0.1 7.1e-05 22.5 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|305663532|ref|YP_003859820.1| - 0.0037 17.3 0.2 0.0037 17.3 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|305663532|ref|YP_003859820.1| - 0.0045 17.3 0.1 0.0072 16.7 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|305663532|ref|YP_003859820.1| - 0.0076 16.3 0.1 0.015 15.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|305663532|ref|YP_003859820.1| - 0.03 14.6 0.0 0.049 14.0 0.0 1.4 1 0 0 1 1 1 0 Transposase AGTRAP PF06396.11 gi|305663533|ref|YP_003859821.1| - 0.17 11.7 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Angiotensin II, type I receptor-associated protein (AGTRAP) Diphthami_syn_2 PF01902.17 gi|305663534|ref|YP_003859822.1| - 2e-46 158.3 0.0 2.4e-46 158.0 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|305663534|ref|YP_003859822.1| - 0.033 13.7 0.0 0.15 11.5 0.0 2.1 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|305663534|ref|YP_003859822.1| - 0.13 11.8 0.0 0.26 10.9 0.0 1.5 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|305663534|ref|YP_003859822.1| - 0.21 11.6 0.0 0.37 10.8 0.0 1.4 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family PSII_Pbs27 PF13326.6 gi|305663535|ref|YP_003859823.1| - 0.16 12.3 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 Photosystem II Pbs27 Ish1 PF10281.9 gi|305663535|ref|YP_003859823.1| - 0.18 12.1 0.0 3.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein DUF3267 PF11667.8 gi|305663536|ref|YP_003859824.1| - 4.6e-07 30.1 7.5 4.6e-07 30.1 7.5 1.5 1 1 1 2 2 2 1 Putative zincin peptidase InaF-motif PF15018.6 gi|305663536|ref|YP_003859824.1| - 0.003 17.4 3.8 0.0081 16.0 3.8 1.7 1 0 0 1 1 1 1 TRP-interacting helix CarS-like PF01864.17 gi|305663537|ref|YP_003859825.1| - 6e-47 159.9 11.4 1.6e-46 158.4 11.4 1.6 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|305663537|ref|YP_003859825.1| - 2.3e-06 27.6 1.1 2.3e-06 27.6 1.1 2.1 1 1 1 2 2 2 1 Cytidylyltransferase family POR PF01558.18 gi|305663538|ref|YP_003859826.1| - 1.4e-41 142.5 0.2 1.6e-41 142.3 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|305663539|ref|YP_003859827.1| - 2.1e-15 55.8 16.5 1.3e-08 34.3 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|305663539|ref|YP_003859827.1| - 5.5e-11 42.4 5.8 8.7e-11 41.8 5.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|305663539|ref|YP_003859827.1| - 8.9e-11 41.7 19.8 5.2e-08 32.9 10.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|305663539|ref|YP_003859827.1| - 1.7e-10 41.3 5.9 2.4e-10 40.8 5.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|305663539|ref|YP_003859827.1| - 2.6e-10 39.9 13.5 2.2e-06 27.5 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|305663539|ref|YP_003859827.1| - 3e-08 33.7 15.8 2.1e-07 31.0 7.2 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|305663539|ref|YP_003859827.1| - 1.1e-07 32.7 6.5 0.00057 20.8 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|305663539|ref|YP_003859827.1| - 1.1e-07 31.5 10.3 0.0016 18.5 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|305663539|ref|YP_003859827.1| - 1.8e-07 31.5 4.8 2.4e-07 31.1 4.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|305663539|ref|YP_003859827.1| - 0.00073 20.0 11.9 0.026 15.1 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|305663539|ref|YP_003859827.1| - 0.00082 20.1 9.6 0.036 14.8 2.5 2.7 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|305663539|ref|YP_003859827.1| - 0.0015 19.0 8.6 0.0069 16.9 8.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|305663539|ref|YP_003859827.1| - 0.0026 18.1 11.8 0.11 13.0 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|305663539|ref|YP_003859827.1| - 0.0084 17.0 5.5 0.0084 17.0 5.5 2.4 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|305663539|ref|YP_003859827.1| - 0.018 15.9 9.5 0.057 14.3 1.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Peptidase_M15 PF01427.17 gi|305663539|ref|YP_003859827.1| - 0.19 11.4 0.0 0.24 11.1 0.0 1.1 1 0 0 1 1 1 0 D-ala-D-ala dipeptidase Fer4_18 PF13746.6 gi|305663539|ref|YP_003859827.1| - 1.3 9.2 10.3 3.2 8.0 1.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|305663540|ref|YP_003859828.1| - 5.2e-71 239.0 3.7 6.7e-71 238.7 3.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|305663540|ref|YP_003859828.1| - 9.9e-25 86.8 0.0 3.5e-24 85.1 0.0 1.9 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|305663540|ref|YP_003859828.1| - 1.1e-06 28.5 0.0 5.6e-06 26.2 0.0 2.1 1 1 1 2 2 2 1 Transketolase, C-terminal domain SeqA_N PF17206.3 gi|305663540|ref|YP_003859828.1| - 0.12 11.7 0.2 0.51 9.7 0.0 2.2 2 0 0 2 2 2 0 SeqA protein N-terminal domain TPP_enzyme_C PF02775.21 gi|305663541|ref|YP_003859829.1| - 6.3e-25 87.7 0.1 1.1e-24 87.0 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PBC PF03792.13 gi|305663541|ref|YP_003859829.1| - 0.11 12.2 0.1 0.17 11.6 0.1 1.2 1 0 0 1 1 1 0 PBC domain ERp29 PF07749.12 gi|305663541|ref|YP_003859829.1| - 0.13 13.2 0.1 1.8 9.5 0.0 2.3 2 0 0 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain Molybdopterin PF00384.22 gi|305663542|ref|YP_003859830.1| - 1.8e-45 155.7 0.0 2e-29 102.8 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|305663542|ref|YP_003859830.1| - 1.2e-15 57.5 0.0 2.8e-15 56.3 0.0 1.6 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|305663542|ref|YP_003859830.1| - 0.027 14.4 0.1 0.053 13.5 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain SMC_N PF02463.19 gi|305663543|ref|YP_003859831.1| - 6.4e-21 74.8 4.6 9.2e-19 67.7 4.6 2.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|305663543|ref|YP_003859831.1| - 5.3e-16 59.7 54.5 1.1e-11 45.6 29.6 4.4 1 1 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|305663543|ref|YP_003859831.1| - 2.2e-13 50.7 22.5 2.4e-10 40.7 1.4 3.9 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|305663543|ref|YP_003859831.1| - 3.8e-12 46.6 25.9 3.5e-07 30.3 1.6 3.5 1 1 0 2 2 2 2 AAA ATPase domain GAS PF13851.6 gi|305663543|ref|YP_003859831.1| - 3.2e-07 29.9 43.3 0.029 13.7 4.6 4.5 4 1 0 4 4 4 4 Growth-arrest specific micro-tubule binding AAA_13 PF13166.6 gi|305663543|ref|YP_003859831.1| - 7.1e-07 28.3 38.3 1e-06 27.8 15.6 4.0 2 1 1 3 3 3 1 AAA domain ABC_tran PF00005.27 gi|305663543|ref|YP_003859831.1| - 1.3e-06 28.9 6.4 0.0067 16.9 0.2 4.2 2 2 0 3 3 3 2 ABC transporter Baculo_PEP_C PF04513.12 gi|305663543|ref|YP_003859831.1| - 1.7e-06 28.1 23.1 0.3 11.1 0.3 5.6 2 2 2 5 5 5 3 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|305663543|ref|YP_003859831.1| - 9.7e-06 25.8 9.2 4 7.8 0.0 5.4 3 1 2 5 5 5 0 Bacterial protein of unknown function (DUF948) SbcCD_C PF13558.6 gi|305663543|ref|YP_003859831.1| - 2.9e-05 24.2 0.0 7e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|305663543|ref|YP_003859831.1| - 5.1e-05 22.9 0.0 8.5e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF1664 PF07889.12 gi|305663543|ref|YP_003859831.1| - 5.8e-05 23.1 25.8 0.24 11.4 0.6 5.7 3 1 2 5 5 5 2 Protein of unknown function (DUF1664) Rad50_zn_hook PF04423.14 gi|305663543|ref|YP_003859831.1| - 0.00017 21.4 0.7 0.00017 21.4 0.7 6.6 6 1 1 7 7 4 1 Rad50 zinc hook motif T3SSipB PF16535.5 gi|305663543|ref|YP_003859831.1| - 0.00033 21.2 1.9 3.9 7.9 0.0 4.1 4 1 0 4 4 4 0 Type III cell invasion protein SipB COG5 PF10392.9 gi|305663543|ref|YP_003859831.1| - 0.0054 16.9 0.8 0.0054 16.9 0.8 5.1 3 2 2 6 6 6 1 Golgi transport complex subunit 5 ATG16 PF08614.11 gi|305663543|ref|YP_003859831.1| - 0.0093 16.2 1.6 0.0093 16.2 1.6 5.0 5 0 0 5 5 5 2 Autophagy protein 16 (ATG16) V-SNARE PF05008.15 gi|305663543|ref|YP_003859831.1| - 0.01 16.2 2.6 0.01 16.2 2.6 6.2 6 1 1 7 7 5 0 Vesicle transport v-SNARE protein N-terminus SRC-1 PF08832.10 gi|305663543|ref|YP_003859831.1| - 0.011 16.8 0.1 0.032 15.3 0.1 1.8 1 0 0 1 1 1 0 Steroid receptor coactivator HemX PF04375.14 gi|305663543|ref|YP_003859831.1| - 0.013 14.9 8.6 6.4 6.0 0.1 4.1 4 0 0 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase Fez1 PF06818.15 gi|305663543|ref|YP_003859831.1| - 0.013 16.0 35.5 0.43 11.0 4.3 4.2 1 1 1 3 3 3 0 Fez1 HsbA PF12296.8 gi|305663543|ref|YP_003859831.1| - 0.014 15.8 0.2 0.31 11.5 0.1 2.9 3 1 1 4 4 2 0 Hydrophobic surface binding protein A OmpH PF03938.14 gi|305663543|ref|YP_003859831.1| - 0.016 15.5 22.6 0.18 12.1 0.8 4.9 3 2 0 4 4 4 0 Outer membrane protein (OmpH-like) DUF4407 PF14362.6 gi|305663543|ref|YP_003859831.1| - 0.017 14.5 14.3 0.079 12.3 2.8 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4407) YtxH PF12732.7 gi|305663543|ref|YP_003859831.1| - 0.019 15.5 8.0 62 4.2 0.0 6.3 3 2 0 3 3 3 0 YtxH-like protein TMPIT PF07851.13 gi|305663543|ref|YP_003859831.1| - 0.02 14.2 18.9 0.62 9.3 0.9 4.1 3 1 1 4 4 4 0 TMPIT-like protein DUF4164 PF13747.6 gi|305663543|ref|YP_003859831.1| - 0.025 14.9 2.1 0.025 14.9 2.1 5.6 4 2 0 4 4 4 0 Domain of unknown function (DUF4164) AAA_25 PF13481.6 gi|305663543|ref|YP_003859831.1| - 0.029 13.9 0.5 0.37 10.3 0.0 2.8 3 0 0 3 3 2 0 AAA domain Snapin_Pallidin PF14712.6 gi|305663543|ref|YP_003859831.1| - 0.043 14.2 23.1 3.6 8.1 0.1 6.2 5 1 1 6 6 6 0 Snapin/Pallidin Syntaxin-6_N PF09177.11 gi|305663543|ref|YP_003859831.1| - 0.048 14.2 32.8 0.27 11.8 0.3 5.8 3 2 1 4 4 4 0 Syntaxin 6, N-terminal DUF3450 PF11932.8 gi|305663543|ref|YP_003859831.1| - 0.068 12.5 22.5 2.2 7.5 0.2 4.8 4 1 1 5 5 5 0 Protein of unknown function (DUF3450) Suppressor_APC PF11414.8 gi|305663543|ref|YP_003859831.1| - 0.072 13.2 15.2 0.43 10.7 0.2 4.0 4 1 0 4 4 2 0 Adenomatous polyposis coli tumour suppressor protein AAA_27 PF13514.6 gi|305663543|ref|YP_003859831.1| - 0.075 12.6 2.8 0.22 11.1 0.0 3.2 4 0 0 4 4 3 0 AAA domain RGCC PF15151.6 gi|305663543|ref|YP_003859831.1| - 0.099 12.9 1.5 1.7 8.9 0.2 2.6 2 0 0 2 2 2 0 Response gene to complement 32 protein family Lipase_GDSL PF00657.22 gi|305663543|ref|YP_003859831.1| - 0.11 12.4 1.0 2.2 8.2 0.0 3.2 3 1 0 3 3 3 0 GDSL-like Lipase/Acylhydrolase MCPsignal PF00015.21 gi|305663543|ref|YP_003859831.1| - 0.16 11.8 6.6 3.8 7.3 0.0 4.6 3 1 0 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF2203 PF09969.9 gi|305663543|ref|YP_003859831.1| - 0.2 12.3 25.0 4.2 8.1 0.1 5.5 2 2 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) LXG PF04740.12 gi|305663543|ref|YP_003859831.1| - 0.22 11.2 23.0 0.017 14.9 4.9 4.1 2 2 1 3 3 3 0 LXG domain of WXG superfamily HAP1_N PF04849.13 gi|305663543|ref|YP_003859831.1| - 0.23 10.6 35.3 0.41 9.8 2.4 4.7 3 1 1 4 4 4 0 HAP1 N-terminal conserved region Sec34 PF04136.15 gi|305663543|ref|YP_003859831.1| - 0.23 11.3 26.9 0.11 12.3 1.8 5.2 3 1 2 5 5 5 0 Sec34-like family BLOC1_2 PF10046.9 gi|305663543|ref|YP_003859831.1| - 0.25 11.7 38.5 0.8 10.0 0.8 6.4 4 3 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FliD_N PF02465.18 gi|305663543|ref|YP_003859831.1| - 0.25 12.0 11.7 19 6.0 0.1 5.3 3 1 1 5 5 4 0 Flagellar hook-associated protein 2 N-terminus AAA_16 PF13191.6 gi|305663543|ref|YP_003859831.1| - 0.28 11.6 7.4 1.4 9.3 0.8 4.3 4 2 0 4 4 3 0 AAA ATPase domain SlyX PF04102.12 gi|305663543|ref|YP_003859831.1| - 0.28 11.8 15.6 3.3 8.4 0.4 5.9 4 1 1 5 5 5 0 SlyX NPV_P10 PF05531.12 gi|305663543|ref|YP_003859831.1| - 0.32 11.5 24.7 6.9 7.2 2.8 6.7 4 2 2 6 6 5 0 Nucleopolyhedrovirus P10 protein Fzo_mitofusin PF04799.13 gi|305663543|ref|YP_003859831.1| - 0.41 10.2 21.9 2.2 7.8 0.4 5.2 3 1 3 6 6 6 0 fzo-like conserved region TINF2_N PF14973.6 gi|305663543|ref|YP_003859831.1| - 0.56 10.5 10.6 0.95 9.8 0.2 3.6 3 1 1 4 4 2 0 TERF1-interacting nuclear factor 2 N-terminus Syntaxin_2 PF14523.6 gi|305663543|ref|YP_003859831.1| - 0.72 10.3 34.3 7.3 7.0 0.3 5.8 4 1 1 5 5 5 0 Syntaxin-like protein TolA_bind_tri PF16331.5 gi|305663543|ref|YP_003859831.1| - 0.79 9.8 20.4 0.19 11.9 1.3 4.6 4 0 0 4 4 4 0 TolA binding protein trimerisation CorA PF01544.18 gi|305663543|ref|YP_003859831.1| - 1.2 8.4 34.9 0.26 10.5 2.3 4.3 1 1 2 4 4 4 0 CorA-like Mg2+ transporter protein FliJ PF02050.16 gi|305663543|ref|YP_003859831.1| - 1.3 9.3 19.1 3.2 8.0 0.3 4.7 4 1 0 4 4 4 0 Flagellar FliJ protein TMF_TATA_bd PF12325.8 gi|305663543|ref|YP_003859831.1| - 1.5 9.0 43.5 0.1 12.8 4.5 5.8 4 1 2 6 6 6 0 TATA element modulatory factor 1 TATA binding APG17 PF04108.12 gi|305663543|ref|YP_003859831.1| - 1.6 7.7 32.4 0.46 9.5 4.7 3.8 2 2 1 3 3 3 0 Autophagy protein Apg17 Occludin_ELL PF07303.13 gi|305663543|ref|YP_003859831.1| - 2.5 8.9 28.9 2.7 8.8 0.6 5.2 3 2 3 6 6 6 0 Occludin homology domain Synaptobrevin PF00957.21 gi|305663543|ref|YP_003859831.1| - 3.6 7.4 7.6 3.8 7.4 0.0 3.8 3 0 0 3 3 3 0 Synaptobrevin EzrA PF06160.12 gi|305663543|ref|YP_003859831.1| - 4.1 5.4 51.8 0.66 8.1 4.3 4.1 2 2 0 3 3 3 0 Septation ring formation regulator, EzrA Peptidase_M2 PF01401.18 gi|305663543|ref|YP_003859831.1| - 4.5 5.8 6.1 19 3.7 3.1 2.7 2 1 0 2 2 2 0 Angiotensin-converting enzyme Fib_alpha PF08702.10 gi|305663543|ref|YP_003859831.1| - 5.1 7.3 37.0 1.2 9.3 1.5 4.7 2 2 1 4 4 4 0 Fibrinogen alpha/beta chain family KxDL PF10241.9 gi|305663543|ref|YP_003859831.1| - 5.3 7.4 23.6 1.6 9.0 0.3 5.9 4 2 1 5 5 5 0 Uncharacterized conserved protein Spc7 PF08317.11 gi|305663543|ref|YP_003859831.1| - 5.4 5.8 48.4 0.99 8.2 10.0 4.3 1 1 2 4 4 4 0 Spc7 kinetochore protein COG2 PF06148.11 gi|305663543|ref|YP_003859831.1| - 6.5 6.8 30.7 1.4 9.0 1.3 5.0 4 2 0 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF16 PF01519.16 gi|305663543|ref|YP_003859831.1| - 7.7 7.1 32.0 5.3 7.6 0.7 5.5 2 2 3 5 5 5 0 Protein of unknown function DUF16 Spc24 PF08286.11 gi|305663543|ref|YP_003859831.1| - 8.1 6.7 30.5 1.4 9.2 0.5 5.7 5 1 0 5 5 5 0 Spc24 subunit of Ndc80 DUF5082 PF16888.5 gi|305663543|ref|YP_003859831.1| - 8.9 6.6 41.3 0.15 12.4 1.0 6.1 3 2 3 6 6 5 0 Domain of unknown function (DUF5082) Metallophos PF00149.28 gi|305663544|ref|YP_003859832.1| - 2.2e-11 44.6 0.0 6.7e-11 43.1 0.0 1.7 1 1 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|305663544|ref|YP_003859832.1| - 8e-09 35.9 0.0 1.4e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF87 PF01935.17 gi|305663545|ref|YP_003859833.1| - 1.1e-30 107.4 1.6 1.1e-30 107.4 1.6 1.6 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|305663545|ref|YP_003859833.1| - 6.1e-11 41.6 0.0 0.00026 19.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|305663545|ref|YP_003859833.1| - 2.4e-07 30.0 0.5 7.4e-07 28.4 0.0 2.0 2 2 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|305663545|ref|YP_003859833.1| - 2.9e-05 23.6 1.1 0.0054 16.1 0.1 2.7 3 0 0 3 3 3 2 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|305663545|ref|YP_003859833.1| - 0.00017 20.6 0.1 0.098 11.6 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.6 gi|305663545|ref|YP_003859833.1| - 0.023 15.1 0.1 0.12 12.8 0.1 2.2 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|305663545|ref|YP_003859833.1| - 0.032 14.8 0.1 0.074 13.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain Clathrin PF00637.20 gi|305663545|ref|YP_003859833.1| - 0.036 13.9 0.7 0.062 13.2 0.7 1.3 1 0 0 1 1 1 0 Region in Clathrin and VPS ABC_tran PF00005.27 gi|305663545|ref|YP_003859833.1| - 0.048 14.2 0.7 0.14 12.7 0.7 1.8 1 1 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|305663545|ref|YP_003859833.1| - 0.18 11.1 0.2 0.46 9.7 0.1 1.6 1 1 0 1 1 1 0 Zeta toxin Lys_export PF03956.13 gi|305663546|ref|YP_003859834.1| - 1.7e-43 148.4 26.7 1.9e-43 148.2 26.7 1.0 1 0 0 1 1 1 1 Lysine exporter LysO CbtB PF09489.10 gi|305663547|ref|YP_003859835.1| - 4.7 7.4 5.4 31 4.8 0.5 3.0 3 0 0 3 3 3 0 Probable cobalt transporter subunit (CbtB) DUF4953 PF16313.5 gi|305663548|ref|YP_003859836.1| - 0.016 14.5 0.2 0.025 13.8 0.2 1.2 1 0 0 1 1 1 0 Met-zincin Reprolysin_4 PF13583.6 gi|305663548|ref|YP_003859836.1| - 0.025 14.2 0.0 0.025 14.2 0.0 2.1 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.24 gi|305663548|ref|YP_003859836.1| - 0.067 13.0 0.0 0.083 12.7 0.0 1.3 1 0 0 1 1 1 0 Matrixin Reprolysin_3 PF13582.6 gi|305663548|ref|YP_003859836.1| - 0.17 12.4 1.3 0.28 11.7 0.2 2.0 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|305663548|ref|YP_003859836.1| - 0.19 10.3 0.1 0.3 9.6 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_5 PF13688.6 gi|305663548|ref|YP_003859836.1| - 0.24 11.5 0.6 0.73 10.0 0.0 2.0 2 0 0 2 2 2 0 Metallo-peptidase family M12 Proton_antipo_N PF00662.20 gi|305663550|ref|YP_003859838.1| - 0.14 12.2 0.1 0.24 11.5 0.1 1.3 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MazE_antitoxin PF04014.18 gi|305663552|ref|YP_003859840.1| - 7.8e-15 54.4 1.9 1.3e-14 53.7 1.9 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|305663552|ref|YP_003859840.1| - 0.0048 16.7 0.4 0.0065 16.3 0.4 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF1905 PF08922.11 gi|305663552|ref|YP_003859840.1| - 0.014 15.5 0.1 0.022 14.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) AbrB-like PF14250.6 gi|305663552|ref|YP_003859840.1| - 0.031 14.4 0.0 0.04 14.0 0.0 1.1 1 0 0 1 1 1 0 AbrB-like transcriptional regulator PIN PF01850.21 gi|305663553|ref|YP_003859841.1| - 2e-09 38.0 0.1 2.6e-09 37.6 0.1 1.1 1 0 0 1 1 1 1 PIN domain CBM-like PF14683.6 gi|305663553|ref|YP_003859841.1| - 0.041 13.8 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain III Peptidase_M24 PF00557.24 gi|305663555|ref|YP_003859843.1| - 2.8e-43 148.0 0.0 3.9e-43 147.6 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF973 PF06157.11 gi|305663556|ref|YP_003859844.1| - 3.8e-12 45.9 25.0 4.6e-12 45.6 25.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|305663556|ref|YP_003859844.1| - 0.49 10.7 35.8 0.087 13.1 14.1 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF996) PMP22_Claudin PF00822.20 gi|305663556|ref|YP_003859844.1| - 6 6.7 17.8 12 5.7 4.4 2.3 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin family DUF4231 PF14015.6 gi|305663556|ref|YP_003859844.1| - 8.9 6.8 9.7 1.5 9.3 1.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) SAP130_C PF16014.5 gi|305663557|ref|YP_003859845.1| - 0.3 10.1 3.4 0.42 9.7 3.4 1.1 1 0 0 1 1 1 0 Histone deacetylase complex subunit SAP130 C-terminus tRNA-synt_2c PF01411.19 gi|305663561|ref|YP_003859849.1| - 7.5e-104 348.2 0.0 1.2e-103 347.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|305663561|ref|YP_003859849.1| - 1.2e-12 47.7 2.0 3.5e-12 46.2 0.4 2.4 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|305663561|ref|YP_003859849.1| - 0.00066 19.0 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Glypican PF01153.19 gi|305663561|ref|YP_003859849.1| - 0.022 13.6 0.2 0.034 13.0 0.2 1.2 1 0 0 1 1 1 0 Glypican FlaC_arch PF05377.11 gi|305663561|ref|YP_003859849.1| - 0.89 10.0 3.2 37 4.8 0.5 2.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Ribosomal_60s PF00428.19 gi|305663562|ref|YP_003859850.1| - 1.7e-15 57.4 8.7 1.9e-15 57.2 8.7 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein EF-hand_14 PF17959.1 gi|305663562|ref|YP_003859850.1| - 0.00063 20.0 0.3 0.00096 19.5 0.0 1.4 2 0 0 2 2 2 1 EF-hand domain TFIID_30kDa PF03540.13 gi|305663562|ref|YP_003859850.1| - 0.051 13.5 0.1 0.081 12.9 0.1 1.2 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit RMMBL PF07521.12 gi|305663563|ref|YP_003859851.1| - 0.0031 17.4 0.0 0.0075 16.2 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|305663563|ref|YP_003859851.1| - 0.0044 16.6 0.0 0.0078 15.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|305663563|ref|YP_003859851.1| - 4.2 7.3 6.1 46 3.9 0.0 2.8 1 1 1 2 2 2 0 Metallo-beta-lactamase superfamily Radical_SAM PF04055.21 gi|305663564|ref|YP_003859852.1| - 8.3e-21 75.1 0.0 1.5e-20 74.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|305663564|ref|YP_003859852.1| - 1.3e-20 73.5 0.0 2.2e-20 72.7 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation MipZ PF09140.11 gi|305663564|ref|YP_003859852.1| - 0.054 12.8 0.0 0.086 12.1 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ DHHA1 PF02272.19 gi|305663565|ref|YP_003859853.1| - 3.7e-06 27.4 0.2 0.0012 19.3 0.0 2.6 3 0 0 3 3 3 2 DHHA1 domain DHH PF01368.20 gi|305663565|ref|YP_003859853.1| - 0.00038 20.6 0.1 0.00068 19.8 0.1 1.4 1 0 0 1 1 1 1 DHH family Sporozoite_P67 PF05642.11 gi|305663565|ref|YP_003859853.1| - 0.15 10.1 0.0 0.22 9.6 0.0 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen NucS PF01939.16 gi|305663566|ref|YP_003859854.1| - 6.7e-48 163.0 0.2 7.9e-48 162.8 0.2 1.0 1 0 0 1 1 1 1 Endonuclease NucS Redoxin PF08534.10 gi|305663566|ref|YP_003859854.1| - 0.0034 17.1 0.1 0.084 12.6 0.0 2.6 3 0 0 3 3 3 1 Redoxin Cas_Cas4 PF01930.17 gi|305663566|ref|YP_003859854.1| - 0.015 15.4 0.0 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF83 HSDR_N_2 PF13588.6 gi|305663566|ref|YP_003859854.1| - 0.019 15.0 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_9 PF08011.11 gi|305663566|ref|YP_003859854.1| - 0.034 14.1 0.0 0.058 13.3 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily PDDEXK_4 PF14281.6 gi|305663566|ref|YP_003859854.1| - 0.058 13.5 0.1 0.087 13.0 0.1 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Mrr_cat PF04471.12 gi|305663566|ref|YP_003859854.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Restriction endonuclease Metallophos PF00149.28 gi|305663568|ref|YP_003859856.1| - 1.9e-17 64.4 1.9 2.5e-17 64.0 1.9 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|305663568|ref|YP_003859856.1| - 3.5e-17 62.6 0.5 3.2e-11 43.0 0.0 2.6 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.7 gi|305663568|ref|YP_003859856.1| - 1.1e-16 61.5 0.0 1.7e-16 60.8 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain NPR2 PF06218.11 gi|305663569|ref|YP_003859857.1| - 0.019 13.7 1.9 0.019 13.7 1.9 1.1 1 0 0 1 1 1 0 Nitrogen permease regulator 2 Helicase_RecD PF05127.14 gi|305663570|ref|YP_003859858.1| - 5.3e-55 186.0 0.0 8.7e-55 185.3 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|305663570|ref|YP_003859858.1| - 5.5e-41 140.4 0.0 8.9e-29 100.5 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|305663570|ref|YP_003859858.1| - 2e-27 94.9 0.0 9.1e-27 92.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|305663570|ref|YP_003859858.1| - 2e-07 31.3 0.2 8.4e-07 29.2 0.2 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|305663570|ref|YP_003859858.1| - 4e-06 27.1 0.0 2.1e-05 24.9 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain tRNA_bind_2 PF13725.6 gi|305663570|ref|YP_003859858.1| - 0.00013 21.7 0.3 0.00025 20.8 0.3 1.4 1 0 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_10 PF13673.7 gi|305663570|ref|YP_003859858.1| - 0.0011 18.9 0.0 0.0032 17.4 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HATPase_c PF02518.26 gi|305663570|ref|YP_003859858.1| - 0.044 14.3 0.0 0.13 12.7 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAA PF00004.29 gi|305663571|ref|YP_003859859.1| - 1e-99 330.1 0.0 2.9e-49 166.9 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|305663571|ref|YP_003859859.1| - 6.4e-34 115.5 0.0 3.2e-16 58.9 0.0 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|305663571|ref|YP_003859859.1| - 2.5e-27 94.8 0.5 7.5e-27 93.3 0.5 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.6 gi|305663571|ref|YP_003859859.1| - 1.6e-15 57.9 0.5 1.7e-07 31.8 0.0 3.8 3 1 1 4 4 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|305663571|ref|YP_003859859.1| - 2.9e-15 56.4 0.0 7.8e-08 32.2 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|305663571|ref|YP_003859859.1| - 1.5e-14 53.5 0.1 8.4e-14 51.1 0.0 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|305663571|ref|YP_003859859.1| - 8.2e-14 52.1 0.0 1.4e-05 25.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|305663571|ref|YP_003859859.1| - 3.8e-12 46.4 0.2 0.00016 21.7 0.1 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|305663571|ref|YP_003859859.1| - 7.6e-11 42.4 1.7 0.0078 16.5 0.0 4.3 2 2 1 4 4 4 2 AAA domain AAA_14 PF13173.6 gi|305663571|ref|YP_003859859.1| - 1.4e-10 41.3 0.0 0.0001 22.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|305663571|ref|YP_003859859.1| - 2.6e-09 37.4 0.0 0.00022 21.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|305663571|ref|YP_003859859.1| - 6.3e-09 35.5 0.0 0.0035 16.6 0.0 2.7 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_18 PF13238.6 gi|305663571|ref|YP_003859859.1| - 1.4e-08 35.4 0.0 0.00088 19.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|305663571|ref|YP_003859859.1| - 7.6e-08 32.6 0.1 0.0024 17.8 0.0 3.4 2 2 1 3 3 3 2 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|305663571|ref|YP_003859859.1| - 1.2e-07 32.1 0.0 0.0072 16.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|305663571|ref|YP_003859859.1| - 3.2e-07 30.7 0.0 0.002 18.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|305663571|ref|YP_003859859.1| - 3.2e-07 30.2 0.3 0.0068 16.4 0.0 2.9 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain Mg_chelatase PF01078.21 gi|305663571|ref|YP_003859859.1| - 3.7e-07 29.7 0.7 0.017 14.5 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|305663571|ref|YP_003859859.1| - 6.9e-07 29.2 0.0 0.021 14.5 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Rad17 PF03215.15 gi|305663571|ref|YP_003859859.1| - 7.5e-07 29.3 0.0 0.085 12.8 0.0 3.1 2 1 1 3 3 3 2 Rad17 P-loop domain AAA_25 PF13481.6 gi|305663571|ref|YP_003859859.1| - 1e-06 28.4 1.4 0.073 12.6 0.1 3.7 3 1 0 3 3 3 2 AAA domain AAA_24 PF13479.6 gi|305663571|ref|YP_003859859.1| - 1.1e-06 28.6 0.0 0.026 14.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|305663571|ref|YP_003859859.1| - 3e-06 26.6 0.1 0.093 12.0 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin TsaE PF02367.17 gi|305663571|ref|YP_003859859.1| - 7.2e-06 26.0 0.0 0.15 12.0 0.0 2.7 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|305663571|ref|YP_003859859.1| - 1.5e-05 24.5 0.1 0.19 11.1 0.0 3.2 3 0 0 3 3 3 2 KaiC NACHT PF05729.12 gi|305663571|ref|YP_003859859.1| - 2.1e-05 24.5 0.6 0.19 11.6 0.0 3.7 3 1 0 3 3 3 2 NACHT domain ABC_tran PF00005.27 gi|305663571|ref|YP_003859859.1| - 5.6e-05 23.7 0.0 0.19 12.3 0.0 2.5 2 0 0 2 2 2 2 ABC transporter Viral_helicase1 PF01443.18 gi|305663571|ref|YP_003859859.1| - 8.9e-05 22.3 0.0 0.24 11.1 0.0 2.2 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase DUF815 PF05673.13 gi|305663571|ref|YP_003859859.1| - 0.00014 21.1 0.0 0.38 9.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|305663571|ref|YP_003859859.1| - 0.00021 21.0 0.0 1.1 8.9 0.0 3.4 3 1 0 3 3 2 1 Sigma-54 interaction domain Parvo_NS1 PF01057.17 gi|305663571|ref|YP_003859859.1| - 0.00065 18.9 0.2 0.21 10.6 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.18 gi|305663571|ref|YP_003859859.1| - 0.00066 19.6 0.0 0.15 11.9 0.0 2.7 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_7 PF12775.7 gi|305663571|ref|YP_003859859.1| - 0.00077 19.0 0.0 1 8.9 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region NB-ARC PF00931.22 gi|305663571|ref|YP_003859859.1| - 0.0008 18.7 0.0 1.5 8.0 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain AAA_17 PF13207.6 gi|305663571|ref|YP_003859859.1| - 0.00095 19.6 0.0 1.6 9.2 0.0 2.9 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|305663571|ref|YP_003859859.1| - 0.0013 18.8 0.0 0.34 11.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain PhoH PF02562.16 gi|305663571|ref|YP_003859859.1| - 0.0018 17.7 0.4 1.5 8.3 0.1 2.5 2 0 0 2 2 2 1 PhoH-like protein AAA_3 PF07726.11 gi|305663571|ref|YP_003859859.1| - 0.002 18.0 0.0 1.1 9.2 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.9 gi|305663571|ref|YP_003859859.1| - 0.0038 17.0 0.0 0.63 9.8 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MazE_antitoxin PF04014.18 gi|305663571|ref|YP_003859859.1| - 0.004 17.1 0.2 0.15 12.0 0.1 2.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin SKI PF01202.22 gi|305663571|ref|YP_003859859.1| - 0.01 16.0 0.0 2.2 8.4 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Molydop_binding PF01568.21 gi|305663571|ref|YP_003859859.1| - 0.015 15.3 0.6 0.29 11.2 0.0 2.5 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain AAA_11 PF13086.6 gi|305663571|ref|YP_003859859.1| - 0.022 14.5 0.0 5.3 6.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|305663571|ref|YP_003859859.1| - 0.045 14.1 0.8 19 5.6 0.0 3.0 3 0 0 3 3 3 0 AAA domain Cytidylate_kin2 PF13189.6 gi|305663571|ref|YP_003859859.1| - 0.055 13.6 0.0 2 8.5 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family AFG1_ATPase PF03969.16 gi|305663571|ref|YP_003859859.1| - 0.057 12.3 0.0 11 4.8 0.0 2.7 2 1 0 2 2 2 0 AFG1-like ATPase KAP_NTPase PF07693.14 gi|305663571|ref|YP_003859859.1| - 0.087 12.0 0.0 28 3.8 0.0 3.1 3 0 0 3 3 3 0 KAP family P-loop domain NTPase_1 PF03266.15 gi|305663571|ref|YP_003859859.1| - 0.1 12.5 1.2 62 3.4 0.0 4.1 3 1 1 4 4 4 0 NTPase DUF2075 PF09848.9 gi|305663571|ref|YP_003859859.1| - 0.12 11.6 0.0 6.7 5.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) TniB PF05621.11 gi|305663571|ref|YP_003859859.1| - 0.12 11.8 0.0 18 4.6 0.0 2.9 4 0 0 4 4 2 0 Bacterial TniB protein IPT PF01745.16 gi|305663571|ref|YP_003859859.1| - 0.13 11.6 0.0 6.5 6.1 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase DAP3 PF10236.9 gi|305663571|ref|YP_003859859.1| - 0.19 10.9 0.0 14 4.7 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 SRPRB PF09439.10 gi|305663571|ref|YP_003859859.1| - 0.21 11.0 0.0 13 5.2 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PEP-utilizers_C PF02896.18 gi|305663572|ref|YP_003859860.1| - 2.3e-83 279.7 0.1 5e-83 278.6 0.1 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|305663572|ref|YP_003859860.1| - 1.7e-55 188.6 0.0 3.5e-45 154.7 0.0 2.2 1 1 1 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|305663572|ref|YP_003859860.1| - 1.3e-25 88.9 0.7 3e-25 87.7 0.7 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|305663572|ref|YP_003859860.1| - 0.00033 19.9 0.3 0.00071 18.8 0.1 1.6 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Hexapep PF00132.24 gi|305663573|ref|YP_003859861.1| - 8.4e-29 98.2 30.2 2.6e-08 33.3 5.2 6.0 4 2 1 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|305663573|ref|YP_003859861.1| - 1.8e-16 59.6 26.4 1e-10 41.2 5.6 6.0 5 1 1 6 6 6 4 Hexapeptide repeat of succinyl-transferase DUF2613 PF11021.8 gi|305663573|ref|YP_003859861.1| - 0.018 15.1 1.4 0.042 14.0 1.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DUF4954 PF16314.5 gi|305663573|ref|YP_003859861.1| - 0.61 8.2 10.0 1.8 6.6 5.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4954) DNA_pol_B PF00136.21 gi|305663574|ref|YP_003859862.1| - 1.2e-54 185.8 0.6 1.9e-54 185.1 0.6 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|305663574|ref|YP_003859862.1| - 4.3e-30 105.0 3.5 4.3e-30 105.0 3.5 1.8 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|305663574|ref|YP_003859862.1| - 0.0016 18.5 0.2 0.006 16.6 0.1 2.0 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|305663574|ref|YP_003859862.1| - 0.0017 18.1 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF4847 PF16139.5 gi|305663574|ref|YP_003859862.1| - 0.016 15.2 1.1 0.19 11.6 1.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4847) Blo-t-5 PF11642.8 gi|305663574|ref|YP_003859862.1| - 0.034 14.1 1.3 0.17 11.9 0.1 2.7 2 0 0 2 2 2 0 Mite allergen Blo t 5 DUF2162 PF09930.9 gi|305663575|ref|YP_003859863.1| - 0.002 17.6 10.4 0.0022 17.5 10.4 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) DUF485 PF04341.12 gi|305663575|ref|YP_003859863.1| - 0.21 11.6 6.7 0.26 11.2 6.7 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF485 TMEM100 PF16311.5 gi|305663575|ref|YP_003859863.1| - 0.71 9.5 4.1 0.92 9.1 4.1 1.3 1 0 0 1 1 1 0 Transmembrane protein 100 ABC2_membrane_3 PF12698.7 gi|305663575|ref|YP_003859863.1| - 3.2 6.7 12.7 3.3 6.7 12.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Tmemb_55A PF09788.9 gi|305663575|ref|YP_003859863.1| - 7.5 5.6 5.8 9.2 5.3 5.8 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A DUF2286 PF10051.9 gi|305663576|ref|YP_003859864.1| - 6.9e-49 165.1 5.2 8.2e-49 164.9 5.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) PDDEXK_10 PF07788.11 gi|305663576|ref|YP_003859864.1| - 0.11 12.4 1.7 0.34 10.9 0.1 2.3 3 0 0 3 3 3 0 PD-(D/E)XK nuclease superfamily Rieske_2 PF13806.6 gi|305663576|ref|YP_003859864.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Rieske-like [2Fe-2S] domain TGS PF02824.21 gi|305663578|ref|YP_003859866.1| - 3.1e-20 72.0 0.0 5.7e-20 71.1 0.0 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|305663578|ref|YP_003859866.1| - 1.4e-16 60.4 0.9 2.4e-16 59.7 0.9 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|305663578|ref|YP_003859866.1| - 1.5e-13 50.9 0.0 3.4e-13 49.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|305663578|ref|YP_003859866.1| - 0.00015 21.3 1.3 0.0039 16.7 0.1 2.4 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|305663578|ref|YP_003859866.1| - 0.0004 20.5 0.3 0.0047 17.0 0.1 2.4 1 1 1 2 2 2 1 Dynamin family RsgA_GTPase PF03193.16 gi|305663578|ref|YP_003859866.1| - 0.0005 20.0 0.1 0.25 11.2 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase Arf PF00025.21 gi|305663578|ref|YP_003859866.1| - 0.00054 19.5 0.1 0.18 11.3 0.0 2.5 2 1 0 2 2 2 2 ADP-ribosylation factor family YchF-GTPase_C PF06071.13 gi|305663578|ref|YP_003859866.1| - 0.0012 19.0 0.6 0.2 11.8 0.6 2.5 1 1 0 1 1 1 1 Protein of unknown function (DUF933) PduV-EutP PF10662.9 gi|305663578|ref|YP_003859866.1| - 0.0031 17.3 0.2 2 8.2 0.1 2.6 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|305663578|ref|YP_003859866.1| - 0.014 15.0 0.7 0.45 10.1 0.1 2.5 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF815 PF05673.13 gi|305663578|ref|YP_003859866.1| - 0.048 12.8 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Roc PF08477.13 gi|305663578|ref|YP_003859866.1| - 0.054 13.7 0.0 0.24 11.6 0.0 2.1 3 0 0 3 3 1 0 Ras of Complex, Roc, domain of DAPkinase G-alpha PF00503.20 gi|305663578|ref|YP_003859866.1| - 0.068 12.3 0.2 1.1 8.3 0.0 2.3 2 0 0 2 2 2 0 G-protein alpha subunit GTP_EFTU PF00009.27 gi|305663578|ref|YP_003859866.1| - 0.073 12.6 0.0 8.1 5.9 0.0 3.0 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain FtsK_SpoIIIE PF01580.18 gi|305663578|ref|YP_003859866.1| - 0.21 10.9 0.0 0.43 9.9 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Enolase_C PF00113.22 gi|305663579|ref|YP_003859867.1| - 1.5e-105 352.7 0.5 2.1e-105 352.2 0.5 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|305663579|ref|YP_003859867.1| - 1.9e-49 167.2 0.3 3.8e-49 166.2 0.3 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|305663579|ref|YP_003859867.1| - 7e-13 48.7 0.0 1.2e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like DZR PF12773.7 gi|305663580|ref|YP_003859868.1| - 0.00013 21.9 0.2 0.00019 21.4 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|305663580|ref|YP_003859868.1| - 0.0022 17.7 4.7 0.58 9.9 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|305663580|ref|YP_003859868.1| - 0.0028 17.0 4.9 0.46 10.0 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.9 gi|305663580|ref|YP_003859868.1| - 0.0034 17.4 3.5 0.17 12.0 0.5 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 TFIIS_C PF01096.18 gi|305663580|ref|YP_003859868.1| - 0.0095 15.8 2.3 0.19 11.6 0.3 2.4 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.11 gi|305663580|ref|YP_003859868.1| - 0.01 15.4 1.8 0.27 10.9 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-IS66 PF13005.7 gi|305663580|ref|YP_003859868.1| - 0.011 16.2 0.4 0.021 15.2 0.4 1.5 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 gi|305663580|ref|YP_003859868.1| - 0.011 15.8 0.8 4.2 7.6 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-ZPR1 PF03367.13 gi|305663580|ref|YP_003859868.1| - 0.011 15.5 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 0 ZPR1 zinc-finger domain zinc_ribbon_5 PF13719.6 gi|305663580|ref|YP_003859868.1| - 0.013 15.3 0.4 1.1 9.1 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|305663580|ref|YP_003859868.1| - 0.013 15.6 0.1 0.021 14.8 0.1 1.3 1 0 0 1 1 1 0 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|305663580|ref|YP_003859868.1| - 0.024 14.6 3.4 0.11 12.4 3.6 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|305663580|ref|YP_003859868.1| - 0.027 14.0 1.6 5.2 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Ogr_Delta PF04606.12 gi|305663580|ref|YP_003859868.1| - 0.047 13.7 1.5 5.4 7.1 0.3 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger OrfB_Zn_ribbon PF07282.11 gi|305663580|ref|YP_003859868.1| - 0.049 13.6 1.4 7.8 6.5 0.0 2.6 3 0 0 3 3 3 0 Putative transposase DNA-binding domain zf-ISL3 PF14690.6 gi|305663580|ref|YP_003859868.1| - 0.052 14.2 0.7 9.5 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Mss51 PF13824.6 gi|305663580|ref|YP_003859868.1| - 0.055 13.6 0.3 2.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-3CxxC_2 PF17180.4 gi|305663580|ref|YP_003859868.1| - 0.072 13.8 0.3 0.88 10.4 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding domain zf-HIT PF04438.16 gi|305663580|ref|YP_003859868.1| - 0.089 12.7 3.3 2.2 8.2 0.2 2.2 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_4 PF13717.6 gi|305663580|ref|YP_003859868.1| - 0.1 12.6 2.1 4.9 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf_CopZ PF18423.1 gi|305663580|ref|YP_003859868.1| - 0.15 12.1 0.4 6.1 6.9 0.0 2.2 2 0 0 2 2 2 0 Zinc binding domain Zn_ribbon_SprT PF17283.2 gi|305663580|ref|YP_003859868.1| - 0.16 11.9 3.8 8 6.5 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DUF1610 PF07754.11 gi|305663580|ref|YP_003859868.1| - 0.21 11.6 5.9 1.3 9.1 0.9 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF3797 PF12677.7 gi|305663580|ref|YP_003859868.1| - 0.26 11.2 1.8 11 6.0 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) Mu-like_Com PF10122.9 gi|305663580|ref|YP_003859868.1| - 0.31 10.5 1.6 2.2 7.8 0.2 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-tcix PF14952.6 gi|305663580|ref|YP_003859868.1| - 0.31 10.7 4.1 8.2 6.1 0.8 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf_UBZ PF18439.1 gi|305663580|ref|YP_003859868.1| - 0.36 10.5 2.1 3.5 7.3 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf_C2H2_10 PF18414.1 gi|305663580|ref|YP_003859868.1| - 0.69 9.5 2.8 17 5.1 0.5 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger Peptidase_S24 PF00717.23 gi|305663581|ref|YP_003859869.1| - 3.5e-12 46.1 0.1 5.8e-12 45.4 0.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like Topoisom_bac PF01131.20 gi|305663582|ref|YP_003859870.1| - 3.4e-102 342.5 0.0 4.2e-102 342.2 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|305663582|ref|YP_003859870.1| - 6.3e-15 55.3 0.0 1.8e-14 53.8 0.0 1.8 1 0 0 1 1 1 1 Toprim domain Cas9_PI PF16595.5 gi|305663582|ref|YP_003859870.1| - 0.069 13.0 3.7 0.097 12.5 0.8 2.4 2 0 0 2 2 2 0 PAM-interacting domain of CRISPR-associated endonuclease Cas9 RNA_pol_Rpb6 PF01192.22 gi|305663583|ref|YP_003859871.1| - 6.1e-15 54.9 0.5 1.5e-14 53.6 0.1 1.8 1 1 1 2 2 2 1 RNA polymerase Rpb6 Cpn60_TCP1 PF00118.24 gi|305663584|ref|YP_003859872.1| - 1.1e-179 598.2 16.9 1.3e-179 598.0 16.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Peptidase_M16 PF00675.20 gi|305663584|ref|YP_003859872.1| - 0.18 11.8 0.6 6.6 6.7 0.1 2.4 1 1 1 2 2 2 0 Insulinase (Peptidase family M16) RecR PF02132.15 gi|305663585|ref|YP_003859873.1| - 3.8e-05 23.2 1.9 3.8e-05 23.2 1.9 2.7 2 1 0 2 2 2 1 RecR protein DZR PF12773.7 gi|305663585|ref|YP_003859873.1| - 0.022 14.8 5.2 0.65 10.1 0.4 2.3 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|305663585|ref|YP_003859873.1| - 0.074 12.8 4.4 32 4.4 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain NRDD PF13597.6 gi|305663585|ref|YP_003859873.1| - 2.3 6.9 7.0 0.098 11.4 0.8 1.7 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase Ribonuc_red_lgC PF02867.15 gi|305663588|ref|YP_003859876.1| - 2.7e-178 593.8 0.0 3.6e-178 593.4 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|305663588|ref|YP_003859876.1| - 3.3e-23 81.5 0.0 9.8e-23 80.0 0.0 1.9 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|305663588|ref|YP_003859876.1| - 6.3e-11 42.7 1.1 6.3e-11 42.7 1.1 2.2 2 0 0 2 2 2 1 ATP cone domain TGT PF01702.18 gi|305663589|ref|YP_003859877.1| - 0.23 10.6 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase AIRS PF00586.24 gi|305663590|ref|YP_003859878.1| - 1.6e-09 38.3 0.0 4.3e-09 36.9 0.1 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Radical_SAM PF04055.21 gi|305663591|ref|YP_003859879.1| - 3e-22 79.8 2.5 4.5e-22 79.2 0.1 2.5 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|305663591|ref|YP_003859879.1| - 3.8e-07 30.4 0.2 9.3e-06 26.0 0.2 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|305663591|ref|YP_003859879.1| - 3.5e-05 23.9 0.5 0.0001 22.4 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain ISN1 PF06437.11 gi|305663591|ref|YP_003859879.1| - 0.029 13.3 0.0 0.1 11.5 0.0 1.9 2 0 0 2 2 2 0 IMP-specific 5'-nucleotidase zf-CHC2 PF01807.20 gi|305663591|ref|YP_003859879.1| - 0.14 12.0 0.1 2.5 8.0 0.0 2.6 2 0 0 2 2 2 0 CHC2 zinc finger ORC3_N PF07034.11 gi|305663591|ref|YP_003859879.1| - 0.18 10.8 0.1 0.27 10.3 0.1 1.1 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 3 N-terminus ParA PF10609.9 gi|305663592|ref|YP_003859880.1| - 0.0016 17.9 0.2 0.0016 17.9 0.2 1.8 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Zeta_toxin PF06414.12 gi|305663592|ref|YP_003859880.1| - 0.002 17.5 0.0 0.0039 16.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|305663592|ref|YP_003859880.1| - 0.0035 17.6 0.1 3.3 8.0 0.0 2.7 3 0 0 3 3 3 2 AAA domain CbiA PF01656.23 gi|305663592|ref|YP_003859880.1| - 0.01 15.9 2.8 0.05 13.6 2.8 2.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain T2SSE PF00437.20 gi|305663592|ref|YP_003859880.1| - 0.011 14.8 0.7 0.025 13.6 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein cobW PF02492.19 gi|305663592|ref|YP_003859880.1| - 0.03 13.9 0.1 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Thymidylate_kin PF02223.17 gi|305663592|ref|YP_003859880.1| - 0.03 14.0 0.0 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 Thymidylate kinase BLOC1_2 PF10046.9 gi|305663592|ref|YP_003859880.1| - 0.033 14.5 0.5 10 6.5 0.0 3.4 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_26 PF13500.6 gi|305663592|ref|YP_003859880.1| - 0.076 12.8 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|305663592|ref|YP_003859880.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_31 PF13614.6 gi|305663592|ref|YP_003859880.1| - 0.18 11.7 3.9 0.4 10.6 0.1 2.8 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|305663593|ref|YP_003859881.1| - 2.8e-20 73.1 0.0 7.5e-20 71.7 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|305663593|ref|YP_003859881.1| - 6.2e-05 23.5 1.1 0.0012 19.2 1.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|305663593|ref|YP_003859881.1| - 0.002 18.4 3.5 0.096 13.0 0.1 3.0 2 1 1 3 3 3 1 AAA domain Bac_DnaA PF00308.18 gi|305663593|ref|YP_003859881.1| - 0.01 15.7 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_18 PF13238.6 gi|305663593|ref|YP_003859881.1| - 0.017 15.7 0.5 0.16 12.5 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|305663593|ref|YP_003859881.1| - 0.029 14.5 0.3 0.23 11.6 0.3 2.3 1 1 0 1 1 1 0 AAA domain EF-hand_8 PF13833.6 gi|305663593|ref|YP_003859881.1| - 0.04 13.8 0.2 0.71 9.8 0.0 2.8 3 0 0 3 3 3 0 EF-hand domain pair TIP49 PF06068.13 gi|305663593|ref|YP_003859881.1| - 0.054 12.7 0.4 0.18 11.0 0.1 2.1 2 1 0 2 2 2 0 TIP49 P-loop domain AAA_5 PF07728.14 gi|305663593|ref|YP_003859881.1| - 0.06 13.3 0.2 0.16 12.0 0.2 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) CbiD PF01888.17 gi|305663593|ref|YP_003859881.1| - 0.066 12.5 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 CbiD AAA_28 PF13521.6 gi|305663593|ref|YP_003859881.1| - 0.067 13.4 0.0 0.19 11.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|305663593|ref|YP_003859881.1| - 0.12 12.7 0.0 0.31 11.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_17 PF13207.6 gi|305663593|ref|YP_003859881.1| - 0.18 12.2 0.0 0.6 10.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain DHHA1 PF02272.19 gi|305663594|ref|YP_003859882.1| - 1.1e-08 35.6 0.0 2.1e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain RD3 PF14473.6 gi|305663594|ref|YP_003859882.1| - 0.048 13.5 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 RD3 protein DegT_DnrJ_EryC1 PF01041.17 gi|305663595|ref|YP_003859883.1| - 8.4e-118 393.8 0.0 9.5e-118 393.6 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|305663595|ref|YP_003859883.1| - 1.1e-05 24.2 0.2 1.5e-05 23.7 0.2 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|305663595|ref|YP_003859883.1| - 3e-05 23.2 0.3 4e-05 22.8 0.3 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|305663595|ref|YP_003859883.1| - 0.00012 21.5 0.7 0.00024 20.5 0.7 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Peptidase_M24 PF00557.24 gi|305663596|ref|YP_003859884.1| - 6.9e-52 176.2 0.1 9.4e-52 175.7 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Elf1 PF05129.13 gi|305663597|ref|YP_003859885.1| - 0.0026 17.8 2.0 0.0061 16.6 1.4 1.8 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like Zn_ribbon_SprT PF17283.2 gi|305663597|ref|YP_003859885.1| - 0.0097 15.8 4.3 1.1 9.2 1.6 2.1 1 1 0 2 2 2 2 SprT-like zinc ribbon domain zf-TFIIB PF13453.6 gi|305663597|ref|YP_003859885.1| - 0.017 14.4 0.8 0.48 9.8 0.2 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-FPG_IleRS PF06827.14 gi|305663597|ref|YP_003859885.1| - 0.034 14.0 6.1 0.79 9.6 0.6 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-Di19 PF05605.12 gi|305663597|ref|YP_003859885.1| - 0.069 13.5 1.6 0.17 12.2 1.6 1.7 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Prim_Zn_Ribbon PF08273.12 gi|305663597|ref|YP_003859885.1| - 0.11 12.8 0.5 3.8 7.9 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Zn_Tnp_IS1595 PF12760.7 gi|305663597|ref|YP_003859885.1| - 0.12 12.3 2.3 3.1 7.8 0.2 2.2 1 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2_9 PF16293.5 gi|305663597|ref|YP_003859885.1| - 0.17 11.8 0.6 8.2 6.4 0.0 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger (1 copy) zf_UBZ PF18439.1 gi|305663597|ref|YP_003859885.1| - 0.73 9.5 3.2 3 7.5 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF3797 PF12677.7 gi|305663597|ref|YP_003859885.1| - 1.9 8.4 11.5 2.2 8.2 1.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF2208 PF09973.9 gi|305663598|ref|YP_003859886.1| - 7e-53 179.6 11.9 8.1e-53 179.4 11.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Peptidase_M50B PF13398.6 gi|305663598|ref|YP_003859886.1| - 0.016 14.8 3.0 0.025 14.2 3.0 1.3 1 0 0 1 1 1 0 Peptidase M50B-like 7tm_1 PF00001.21 gi|305663598|ref|YP_003859886.1| - 0.051 12.9 2.9 0.066 12.5 1.8 1.7 1 1 1 2 2 2 0 7 transmembrane receptor (rhodopsin family) THUMP PF02926.17 gi|305663600|ref|YP_003859888.1| - 6.1e-07 29.6 0.0 8.6e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 THUMP domain DUF150_C PF17384.2 gi|305663601|ref|YP_003859889.1| - 0.061 13.5 1.8 0.44 10.7 0.5 2.0 2 0 0 2 2 2 0 RimP C-terminal SH3 domain KH_7 PF17214.3 gi|305663601|ref|YP_003859889.1| - 0.063 13.2 0.0 0.24 11.4 0.0 1.9 1 1 1 2 2 2 0 KH domain 5-FTHF_cyc-lig PF01812.20 gi|305663602|ref|YP_003859890.1| - 2.7e-32 112.1 0.0 3.6e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family tRNA-synt_1e PF01406.19 gi|305663603|ref|YP_003859891.1| - 8.4e-122 406.2 0.0 1.4e-121 405.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|305663603|ref|YP_003859891.1| - 2.2e-18 66.2 1.2 1.1e-09 37.6 0.2 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|305663603|ref|YP_003859891.1| - 8.8e-11 40.8 0.1 6.7e-10 37.8 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.11 gi|305663603|ref|YP_003859891.1| - 4.3e-08 33.5 0.6 1.1e-07 32.2 0.1 1.9 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 gi|305663603|ref|YP_003859891.1| - 9.2e-07 28.1 0.6 1.4e-05 24.2 0.1 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) DUF2089 PF09862.9 gi|305663603|ref|YP_003859891.1| - 0.42 10.7 2.6 0.66 10.0 1.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2089) PheRS_DBD2 PF18554.1 gi|305663603|ref|YP_003859891.1| - 2.9 7.9 4.9 8.4 6.5 0.4 3.2 3 1 1 4 4 4 0 PheRS DNA binding domain 2 ORC2 PF04084.14 gi|305663604|ref|YP_003859892.1| - 0.017 14.1 0.1 0.031 13.2 0.0 1.4 1 1 0 1 1 1 0 Origin recognition complex subunit 2 Prok-RING_4 PF14447.6 gi|305663605|ref|YP_003859893.1| - 0.0048 16.7 3.2 0.0048 16.7 3.2 3.0 1 1 2 3 3 3 2 Prokaryotic RING finger family 4 zf-B_box PF00643.24 gi|305663605|ref|YP_003859893.1| - 0.013 15.7 3.0 0.013 15.7 3.0 3.1 2 1 1 3 3 3 0 B-box zinc finger zf-C3HC4_3 PF13920.6 gi|305663605|ref|YP_003859893.1| - 0.027 14.3 30.3 0.16 11.9 12.1 2.7 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.6 gi|305663605|ref|YP_003859893.1| - 3 7.9 28.6 6.4 6.8 9.4 3.7 2 2 0 2 2 2 0 zinc-RING finger domain zf-RING_2 PF13639.6 gi|305663605|ref|YP_003859893.1| - 3.1 8.2 27.1 1.3 9.4 10.7 2.4 2 0 0 2 2 2 0 Ring finger domain DUF2180 PF09947.9 gi|305663605|ref|YP_003859893.1| - 3.9 7.5 23.5 0.47 10.4 0.5 3.1 2 2 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.21 gi|305663605|ref|YP_003859893.1| - 4.3 7.6 29.7 3.1e+02 1.6 18.1 3.4 1 1 1 2 2 2 0 FYVE zinc finger YabP PF07873.11 gi|305663606|ref|YP_003859894.1| - 0.003 17.3 2.0 0.077 12.8 0.1 2.4 1 1 1 2 2 2 2 YabP family p31comet PF06581.12 gi|305663606|ref|YP_003859894.1| - 0.12 11.5 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 Mad1 and Cdc20-bound-Mad2 binding HSBP1 PF06825.12 gi|305663607|ref|YP_003859895.1| - 0.00067 19.5 2.5 0.012 15.4 2.5 2.7 1 1 0 1 1 1 1 Heat shock factor binding protein 1 RHH_1 PF01402.21 gi|305663607|ref|YP_003859895.1| - 0.00068 19.5 0.0 0.0026 17.6 0.0 2.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Baculo_PEP_C PF04513.12 gi|305663607|ref|YP_003859895.1| - 0.00082 19.4 0.5 0.0031 17.5 0.3 1.9 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Exonuc_VII_L PF02601.15 gi|305663607|ref|YP_003859895.1| - 0.0012 18.5 1.8 0.0015 18.2 1.8 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit DUF1778 PF08681.11 gi|305663607|ref|YP_003859895.1| - 0.0066 16.4 0.8 2.2 8.3 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1778) Ax_dynein_light PF10211.9 gi|305663607|ref|YP_003859895.1| - 0.011 15.7 9.1 0.081 12.9 9.1 2.3 1 1 0 1 1 1 0 Axonemal dynein light chain Snf7 PF03357.21 gi|305663607|ref|YP_003859895.1| - 0.012 15.3 4.5 0.012 15.3 4.5 2.7 3 0 0 3 3 3 0 Snf7 Apolipoprotein PF01442.18 gi|305663607|ref|YP_003859895.1| - 0.018 15.0 4.1 0.08 12.8 4.1 1.9 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain XhlA PF10779.9 gi|305663607|ref|YP_003859895.1| - 0.02 15.1 0.9 0.02 15.1 0.9 2.6 2 1 0 2 2 2 0 Haemolysin XhlA TMPIT PF07851.13 gi|305663607|ref|YP_003859895.1| - 0.046 13.0 2.8 0.052 12.8 2.0 1.5 1 1 0 1 1 1 0 TMPIT-like protein Jnk-SapK_ap_N PF09744.9 gi|305663607|ref|YP_003859895.1| - 0.048 13.9 12.0 0.02 15.1 9.0 1.7 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 Laminin_I PF06008.14 gi|305663607|ref|YP_003859895.1| - 0.063 13.0 8.0 0.073 12.8 7.2 1.4 1 1 0 1 1 1 0 Laminin Domain I Golgin_A5 PF09787.9 gi|305663607|ref|YP_003859895.1| - 0.07 12.6 12.5 0.1 12.1 12.5 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 CENP-F_leu_zip PF10473.9 gi|305663607|ref|YP_003859895.1| - 0.073 13.1 13.3 0.057 13.4 7.7 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Matrilin_ccoil PF10393.9 gi|305663607|ref|YP_003859895.1| - 0.09 12.7 2.1 0.39 10.6 0.7 2.9 2 1 0 2 2 1 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF1664 PF07889.12 gi|305663607|ref|YP_003859895.1| - 0.11 12.6 5.6 0.05 13.6 1.9 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) CENP-Q PF13094.6 gi|305663607|ref|YP_003859895.1| - 0.2 11.8 7.5 0.081 13.1 4.0 1.9 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF885 PF05960.11 gi|305663607|ref|YP_003859895.1| - 0.29 10.7 2.5 0.93 9.1 2.5 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF885) ABC_tran_CTD PF16326.5 gi|305663607|ref|YP_003859895.1| - 0.32 11.3 9.9 0.074 13.3 4.1 2.9 2 1 1 3 3 3 0 ABC transporter C-terminal domain Fib_alpha PF08702.10 gi|305663607|ref|YP_003859895.1| - 0.5 10.5 10.9 0.4 10.9 6.6 2.5 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|305663607|ref|YP_003859895.1| - 0.51 10.7 9.2 0.38 11.1 3.2 3.4 2 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phasin PF05597.11 gi|305663607|ref|YP_003859895.1| - 0.51 10.3 8.3 0.099 12.7 1.6 2.7 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) CelTOS PF18659.1 gi|305663607|ref|YP_003859895.1| - 0.57 10.6 7.9 3.4 8.1 5.8 2.8 2 1 1 3 3 3 0 Cell-traversal protein for ookinetes and sporozoites Laminin_II PF06009.12 gi|305663607|ref|YP_003859895.1| - 0.64 10.0 9.9 0.51 10.3 8.0 1.8 1 1 1 2 2 2 0 Laminin Domain II YabA PF06156.13 gi|305663607|ref|YP_003859895.1| - 1.6 9.4 6.2 1.1 9.9 1.2 2.6 1 1 1 2 2 2 0 Initiation control protein YabA ZapB PF06005.12 gi|305663607|ref|YP_003859895.1| - 2.8 8.4 12.4 0.39 11.2 1.9 3.0 3 1 0 3 3 3 0 Cell division protein ZapB Atg14 PF10186.9 gi|305663607|ref|YP_003859895.1| - 3.9 6.5 9.9 4.8 6.2 9.9 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 APG6_N PF17675.1 gi|305663607|ref|YP_003859895.1| - 4.7 7.7 11.0 4 8.0 8.5 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region QRPTase_C PF01729.19 gi|305663608|ref|YP_003859896.1| - 1.7e-24 86.5 0.0 2.3e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|305663608|ref|YP_003859896.1| - 0.0004 20.4 0.0 0.00068 19.6 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_C PF17956.1 gi|305663608|ref|YP_003859896.1| - 0.00097 19.5 0.0 0.0025 18.2 0.0 1.6 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain NAPRTase_N PF17767.1 gi|305663608|ref|YP_003859896.1| - 0.001 19.5 0.1 0.78 10.1 0.1 2.3 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Kelch_1 PF01344.25 gi|305663608|ref|YP_003859896.1| - 0.088 12.4 2.5 0.1 12.2 0.3 2.2 2 1 0 2 2 2 0 Kelch motif BILBO1_N PF18281.1 gi|305663608|ref|YP_003859896.1| - 0.12 12.8 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 BILBO1 N-terminal domain tRNA-synt_1 PF00133.22 gi|305663610|ref|YP_003859898.1| - 4.4e-52 177.2 1.7 7.8e-51 173.0 0.1 2.7 2 1 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|305663610|ref|YP_003859898.1| - 6.2e-27 94.4 0.1 1.5e-13 50.3 0.1 3.9 3 1 1 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|305663610|ref|YP_003859898.1| - 1.2e-12 47.8 0.0 1.9e-06 27.5 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|305663610|ref|YP_003859898.1| - 1.1e-10 41.6 0.7 2.8e-09 37.1 0.3 2.6 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|305663610|ref|YP_003859898.1| - 6.7e-07 29.0 0.1 3.2e-06 26.8 0.0 2.1 2 1 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|305663610|ref|YP_003859898.1| - 0.0086 15.0 0.0 1.2 8.0 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (K) ABC2_membrane_3 PF12698.7 gi|305663612|ref|YP_003859900.1| - 3.4 6.7 15.1 3.8 6.5 15.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF872 PF05915.12 gi|305663612|ref|YP_003859900.1| - 3.9 7.7 6.7 4.7 7.4 6.7 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) Thioredoxin_3 PF13192.6 gi|305663614|ref|YP_003859902.1| - 1.6e-22 79.3 0.1 2.9e-13 49.7 0.0 2.3 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|305663614|ref|YP_003859902.1| - 1.6e-07 31.3 0.0 0.0049 16.8 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|305663614|ref|YP_003859902.1| - 0.0012 19.3 0.8 0.077 13.5 0.0 3.0 2 2 0 2 2 2 1 Thioredoxin-like domain Glutaredoxin PF00462.24 gi|305663614|ref|YP_003859902.1| - 0.0015 18.7 1.7 0.29 11.4 1.2 3.0 2 1 0 2 2 2 1 Glutaredoxin Thioredoxin_4 PF13462.6 gi|305663614|ref|YP_003859902.1| - 0.0026 17.9 0.3 5.8 7.0 0.0 3.5 3 1 1 4 4 4 2 Thioredoxin Pox_A8 PF04745.12 gi|305663614|ref|YP_003859902.1| - 0.017 14.3 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 VITF-3 subunit protein DUF5053 PF16476.5 gi|305663614|ref|YP_003859902.1| - 0.22 11.2 0.6 8.3 6.2 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF5053) UDPG_MGDP_dh PF00984.19 gi|305663615|ref|YP_003859903.1| - 5.4e-09 36.1 0.0 9.1e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.15 gi|305663615|ref|YP_003859903.1| - 0.0017 18.5 0.0 0.025 14.7 0.0 2.5 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|305663615|ref|YP_003859903.1| - 0.025 14.2 0.7 0.23 11.0 0.1 2.5 2 1 1 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|305663615|ref|YP_003859903.1| - 0.031 13.7 0.0 0.049 13.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|305663615|ref|YP_003859903.1| - 0.046 14.0 1.3 0.1 12.8 0.1 2.1 3 0 0 3 3 3 0 TrkA-N domain PglD_N PF17836.1 gi|305663615|ref|YP_003859903.1| - 0.049 14.3 0.2 0.12 13.0 0.2 1.7 1 0 0 1 1 1 0 PglD N-terminal domain AdoMet_dc PF02675.15 gi|305663616|ref|YP_003859904.1| - 1.2e-32 112.4 0.0 1.3e-32 112.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase PDDEXK_1 PF12705.7 gi|305663617|ref|YP_003859905.1| - 2e-10 41.0 0.2 3.1e-07 30.6 0.4 2.9 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|305663617|ref|YP_003859905.1| - 4e-07 30.3 0.2 5.7e-07 29.8 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.6 gi|305663617|ref|YP_003859905.1| - 8.7e-07 29.3 0.2 1.5e-06 28.5 0.2 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Paf67 PF10255.9 gi|305663617|ref|YP_003859905.1| - 0.0047 16.0 0.2 0.0057 15.7 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase I-associated factor PAF67 Haemagg_act PF05860.13 gi|305663617|ref|YP_003859905.1| - 0.18 11.7 0.1 0.32 10.9 0.1 1.3 1 0 0 1 1 1 0 haemagglutination activity domain DUF1152 PF06626.12 gi|305663618|ref|YP_003859906.1| - 3e-104 348.4 0.0 3.5e-104 348.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) MarR PF01047.22 gi|305663619|ref|YP_003859907.1| - 4.4e-05 23.3 0.1 6.7e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|305663619|ref|YP_003859907.1| - 0.004 17.1 0.0 0.0049 16.8 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|305663619|ref|YP_003859907.1| - 0.0057 16.5 0.0 0.0075 16.1 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|305663619|ref|YP_003859907.1| - 0.0059 16.9 0.0 0.0067 16.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator SgrR_N PF12793.7 gi|305663619|ref|YP_003859907.1| - 0.0067 16.6 0.0 0.0076 16.5 0.0 1.1 1 0 0 1 1 1 1 Sugar transport-related sRNA regulator N-term HTH_27 PF13463.6 gi|305663619|ref|YP_003859907.1| - 0.01 16.3 0.0 0.014 15.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain RuvB_C PF05491.13 gi|305663619|ref|YP_003859907.1| - 0.012 15.5 0.1 0.017 15.0 0.1 1.4 1 1 0 1 1 1 0 RuvB C-terminal winged helix domain MarR_2 PF12802.7 gi|305663619|ref|YP_003859907.1| - 0.012 15.5 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|305663619|ref|YP_003859907.1| - 0.049 13.7 0.0 0.058 13.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain ANT PF03374.14 gi|305663619|ref|YP_003859907.1| - 0.065 13.5 0.0 0.072 13.4 0.0 1.2 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain DUF4423 PF14394.6 gi|305663619|ref|YP_003859907.1| - 0.073 12.8 0.0 0.09 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) SMC_Nse1 PF07574.13 gi|305663619|ref|YP_003859907.1| - 0.074 12.9 0.0 0.076 12.9 0.0 1.1 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex TIP49 PF06068.13 gi|305663620|ref|YP_003859908.1| - 4.3e-138 460.3 0.2 6.1e-138 459.8 0.2 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|305663620|ref|YP_003859908.1| - 1.5e-23 82.7 4.4 2.5e-23 82.0 1.0 3.0 4 0 0 4 4 3 1 TIP49 AAA-lid domain AAA PF00004.29 gi|305663620|ref|YP_003859908.1| - 4.3e-12 46.6 1.8 2.1e-08 34.7 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|305663620|ref|YP_003859908.1| - 2.1e-08 34.7 0.2 1.1e-06 29.2 0.2 2.3 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|305663620|ref|YP_003859908.1| - 7.8e-07 29.0 0.1 4e-05 23.4 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|305663620|ref|YP_003859908.1| - 4e-06 27.1 0.0 0.085 13.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|305663620|ref|YP_003859908.1| - 3.4e-05 23.9 1.0 0.0069 16.4 0.0 3.8 3 2 1 4 4 4 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|305663620|ref|YP_003859908.1| - 0.00031 20.5 0.0 0.082 12.6 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|305663620|ref|YP_003859908.1| - 0.00033 20.1 0.3 0.0062 15.9 0.1 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|305663620|ref|YP_003859908.1| - 0.00044 19.9 0.0 0.0013 18.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|305663620|ref|YP_003859908.1| - 0.00095 19.3 0.0 0.0028 17.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain TFIID-31kDa PF02291.15 gi|305663620|ref|YP_003859908.1| - 0.00098 19.2 0.3 0.72 9.9 0.1 2.7 2 1 0 2 2 2 1 Transcription initiation factor IID, 31kD subunit DnaB_C PF03796.15 gi|305663620|ref|YP_003859908.1| - 0.0013 18.2 0.0 0.0023 17.3 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_7 PF12775.7 gi|305663620|ref|YP_003859908.1| - 0.0021 17.6 0.0 0.066 12.7 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|305663620|ref|YP_003859908.1| - 0.0023 17.7 0.0 0.0072 16.1 0.0 1.9 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_17 PF13207.6 gi|305663620|ref|YP_003859908.1| - 0.0041 17.5 0.2 0.039 14.4 0.0 2.8 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.12 gi|305663620|ref|YP_003859908.1| - 0.0047 16.2 0.1 0.013 14.8 0.0 1.7 2 0 0 2 2 1 1 Zeta toxin AAA_18 PF13238.6 gi|305663620|ref|YP_003859908.1| - 0.0092 16.5 0.0 0.052 14.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|305663620|ref|YP_003859908.1| - 0.0099 16.4 0.0 0.025 15.1 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_lid_2 PF17863.1 gi|305663620|ref|YP_003859908.1| - 0.011 15.6 0.2 0.028 14.2 0.2 1.7 1 0 0 1 1 1 0 AAA lid domain AAA_19 PF13245.6 gi|305663620|ref|YP_003859908.1| - 0.013 15.9 0.6 0.21 11.9 0.6 2.3 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|305663620|ref|YP_003859908.1| - 0.014 15.3 0.0 0.041 13.8 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 gi|305663620|ref|YP_003859908.1| - 0.033 14.5 2.7 0.14 12.4 0.0 3.1 4 1 0 4 4 3 0 AAA domain ResIII PF04851.15 gi|305663620|ref|YP_003859908.1| - 0.055 13.5 0.0 0.53 10.3 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_2 PF07724.14 gi|305663620|ref|YP_003859908.1| - 0.058 13.5 0.0 0.21 11.7 0.0 2.0 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) Mg_chelatase_C PF13335.6 gi|305663620|ref|YP_003859908.1| - 0.073 13.7 0.5 0.29 11.8 0.5 2.0 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal RNA_helicase PF00910.22 gi|305663620|ref|YP_003859908.1| - 0.075 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DNA_pol3_delta2 PF13177.6 gi|305663620|ref|YP_003859908.1| - 0.096 12.5 0.2 2.5 7.9 0.0 2.8 3 2 0 3 3 3 0 DNA polymerase III, delta subunit Globin PF00042.22 gi|305663620|ref|YP_003859908.1| - 0.1 13.2 0.0 0.19 12.3 0.0 1.4 1 0 0 1 1 1 0 Globin Pallilysin PF18663.1 gi|305663620|ref|YP_003859908.1| - 0.13 12.3 0.2 0.55 10.2 0.0 2.2 2 0 0 2 2 2 0 Pallilysin beta barrel domain GT87 PF09594.10 gi|305663621|ref|YP_003859909.1| - 0.0031 17.3 3.3 0.0031 17.3 3.3 3.1 2 2 0 3 3 3 2 Glycosyltransferase family 87 PMT_2 PF13231.6 gi|305663622|ref|YP_003859910.1| - 1.4e-10 41.6 19.7 1.4e-10 41.6 19.7 3.2 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|305663622|ref|YP_003859910.1| - 3.4e-05 23.6 32.9 0.00015 21.4 22.3 4.0 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Nairovirus_M PF07948.11 gi|305663622|ref|YP_003859910.1| - 1.1 7.4 2.9 2 6.5 2.9 1.3 1 0 0 1 1 1 0 Nairovirus M polyprotein-like EpsG PF14897.6 gi|305663622|ref|YP_003859910.1| - 3.8 6.7 44.9 0.45 9.8 23.1 3.3 3 0 0 3 3 3 0 EpsG family DUF2115 PF09888.9 gi|305663623|ref|YP_003859911.1| - 0.055 14.0 0.7 0.11 13.0 0.7 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) DUF2070 PF09843.9 gi|305663623|ref|YP_003859911.1| - 7.2 4.8 19.0 9.9 4.3 19.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) HTH_45 PF14947.6 gi|305663624|ref|YP_003859912.1| - 0.024 14.6 0.2 0.075 13.0 0.1 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix RusA PF05866.11 gi|305663624|ref|YP_003859912.1| - 0.086 13.4 1.1 0.094 13.3 0.1 1.6 2 1 0 2 2 2 0 Endodeoxyribonuclease RusA HEPN_Apea PF18739.1 gi|305663624|ref|YP_003859912.1| - 0.19 12.2 1.4 0.45 11.0 1.4 1.8 1 1 0 1 1 1 0 Apea-like HEPN DUF2153 PF09921.9 gi|305663625|ref|YP_003859913.1| - 5.1e-43 145.8 0.1 5.8e-43 145.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Trm112p PF03966.16 gi|305663626|ref|YP_003859914.1| - 7.4e-14 52.1 2.3 1.3e-13 51.3 2.3 1.4 1 0 0 1 1 1 1 Trm112p-like protein zf-ribbon_3 PF13248.6 gi|305663626|ref|YP_003859914.1| - 0.043 13.2 7.2 0.41 10.1 1.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain PHD PF00628.29 gi|305663626|ref|YP_003859914.1| - 2.5 8.0 7.6 1.2 9.0 2.4 2.7 2 1 1 3 3 3 0 PHD-finger PGM_PMM_I PF02878.16 gi|305663627|ref|YP_003859915.1| - 3.5e-35 120.7 0.0 7.3e-35 119.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|305663627|ref|YP_003859915.1| - 4.3e-21 75.5 0.0 7.9e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|305663627|ref|YP_003859915.1| - 8.8e-14 51.7 0.0 1.6e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|305663627|ref|YP_003859915.1| - 2.7e-07 30.7 0.0 6.9e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF354 PF04007.12 gi|305663628|ref|YP_003859916.1| - 1.7e-36 126.0 1.6 2.1e-36 125.7 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) RNase_HII PF01351.18 gi|305663629|ref|YP_003859917.1| - 7.6e-48 163.0 0.0 8.9e-48 162.8 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Mut7-C PF01927.16 gi|305663630|ref|YP_003859918.1| - 1.1e-41 142.4 0.0 1.3e-41 142.1 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|305663630|ref|YP_003859918.1| - 3e-06 26.9 0.0 2.1e-05 24.2 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF5615) DUF4974 PF16344.5 gi|305663630|ref|YP_003859918.1| - 0.11 12.5 0.2 0.32 11.0 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4974) ADK_lid PF05191.14 gi|305663630|ref|YP_003859918.1| - 0.13 12.3 0.5 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|305663630|ref|YP_003859918.1| - 0.13 12.4 1.5 2.8 8.1 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|305663630|ref|YP_003859918.1| - 0.13 11.8 2.5 1.7 8.2 0.3 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding AMMECR1 PF01871.17 gi|305663631|ref|YP_003859919.1| - 1.3e-51 174.5 0.0 1.6e-51 174.3 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 dUTPase PF00692.19 gi|305663632|ref|YP_003859920.1| - 2.3e-18 66.1 0.0 3.7e-18 65.5 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|305663632|ref|YP_003859920.1| - 6.4e-07 28.5 0.1 0.032 13.0 0.0 2.9 2 1 0 3 3 3 3 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Rubrerythrin PF02915.17 gi|305663633|ref|YP_003859921.1| - 5e-05 23.7 4.8 0.00015 22.2 4.0 2.0 1 1 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|305663633|ref|YP_003859921.1| - 0.00032 21.0 1.1 0.013 15.8 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) FA_desaturase_2 PF03405.14 gi|305663633|ref|YP_003859921.1| - 0.00075 18.4 0.9 0.063 12.1 0.1 2.1 2 0 0 2 2 2 2 Fatty acid desaturase Ferritin PF00210.24 gi|305663633|ref|YP_003859921.1| - 0.0077 16.2 5.0 0.051 13.5 0.4 2.1 2 0 0 2 2 2 1 Ferritin-like domain Citrate_synt PF00285.21 gi|305663633|ref|YP_003859921.1| - 0.06 12.4 1.1 0.24 10.4 0.3 1.9 1 1 1 2 2 2 0 Citrate synthase, C-terminal domain Cdh1_DBD_1 PF18196.1 gi|305663633|ref|YP_003859921.1| - 0.095 13.0 4.5 0.058 13.7 1.9 1.8 1 1 1 2 2 2 0 Chromodomain helicase DNA-binding domain 1 ECH_2 PF16113.5 gi|305663633|ref|YP_003859921.1| - 0.096 12.2 0.5 0.12 11.8 0.5 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase FCH PF00611.23 gi|305663633|ref|YP_003859921.1| - 0.15 12.3 0.5 0.4 11.0 0.5 1.7 1 1 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain Linocin_M18 PF04454.12 gi|305663634|ref|YP_003859922.1| - 2.9e-38 131.6 0.1 4.7e-38 130.9 0.1 1.3 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|305663634|ref|YP_003859922.1| - 8.6e-09 35.9 1.2 2.2e-08 34.6 0.5 2.0 2 0 0 2 2 2 1 Rubrerythrin DUF2383 PF09537.10 gi|305663634|ref|YP_003859922.1| - 0.0023 18.3 0.2 0.0048 17.2 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) DUF2202 PF09968.9 gi|305663634|ref|YP_003859922.1| - 0.017 15.0 0.1 0.04 13.8 0.1 1.6 2 0 0 2 2 2 0 Uncharacterized protein domain (DUF2202) Ferritin PF00210.24 gi|305663634|ref|YP_003859922.1| - 0.02 14.8 0.1 0.055 13.4 0.1 1.8 1 0 0 1 1 1 0 Ferritin-like domain DUF4885 PF16226.5 gi|305663634|ref|YP_003859922.1| - 0.059 12.4 0.8 0.42 9.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4885) Ribosomal_S10 PF00338.22 gi|305663635|ref|YP_003859923.1| - 2.2e-28 98.4 0.1 2.4e-28 98.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|305663635|ref|YP_003859923.1| - 0.016 16.0 0.1 0.047 14.5 0.0 1.7 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|305663636|ref|YP_003859924.1| - 7.5e-52 175.7 0.0 1.1e-51 175.2 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|305663636|ref|YP_003859924.1| - 1.7e-35 121.7 0.0 3.2e-35 120.8 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|305663636|ref|YP_003859924.1| - 1.6e-16 60.4 2.9 1.7e-15 57.1 1.4 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|305663636|ref|YP_003859924.1| - 2.2e-06 27.7 0.0 1.6e-05 25.0 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|305663636|ref|YP_003859924.1| - 0.00021 21.1 0.0 0.017 14.9 0.0 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU_D4 PF14578.6 gi|305663636|ref|YP_003859924.1| - 0.0012 18.7 1.5 0.0033 17.3 1.5 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 RsgA_GTPase PF03193.16 gi|305663636|ref|YP_003859924.1| - 0.0041 17.0 0.1 0.89 9.4 0.0 2.5 1 1 1 2 2 2 1 RsgA GTPase Dynamin_N PF00350.23 gi|305663636|ref|YP_003859924.1| - 0.0068 16.5 0.1 4.4 7.3 0.0 2.4 1 1 1 2 2 2 2 Dynamin family SRPRB PF09439.10 gi|305663636|ref|YP_003859924.1| - 0.026 14.0 0.0 3.4 7.1 0.0 2.3 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit Ribosomal_S7 PF00177.21 gi|305663637|ref|YP_003859925.1| - 1.4e-43 148.1 0.7 1.7e-43 147.8 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.25 gi|305663638|ref|YP_003859926.1| - 6e-45 151.5 0.6 7.4e-45 151.2 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|305663639|ref|YP_003859927.1| - 2.2e-15 56.3 1.1 3.4e-09 36.4 0.1 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|305663639|ref|YP_003859927.1| - 2.2e-13 50.1 0.8 5.5e-12 45.6 0.1 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|305663639|ref|YP_003859927.1| - 9.1e-09 35.1 0.9 7.1e-06 25.8 0.0 2.5 2 1 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|305663639|ref|YP_003859927.1| - 0.0058 16.4 0.3 1.7 8.6 0.0 2.4 2 0 0 2 2 2 2 KH domain eIF3_p135 PF12807.7 gi|305663639|ref|YP_003859927.1| - 0.049 13.7 0.0 0.054 13.5 0.0 1.2 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit 135 Ribosomal_L7Ae PF01248.26 gi|305663640|ref|YP_003859928.1| - 2e-17 62.7 0.0 2.4e-17 62.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|305663641|ref|YP_003859929.1| - 3.2e-55 187.4 0.7 5.9e-55 186.6 0.7 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 FANCI_S1 PF14675.6 gi|305663641|ref|YP_003859929.1| - 0.004 16.8 0.0 0.01 15.4 0.0 1.6 1 0 0 1 1 1 1 FANCI solenoid 1 DnaB_2 PF07261.11 gi|305663641|ref|YP_003859929.1| - 0.0077 16.0 1.5 0.035 13.9 0.2 2.7 3 0 0 3 3 3 1 Replication initiation and membrane attachment DUF5402 PF17393.2 gi|305663641|ref|YP_003859929.1| - 0.26 11.2 2.7 5.3 7.0 0.5 2.8 2 0 0 2 2 2 0 Family of unknown function (DUF5402) RNA_pol_Rpb1_1 PF04997.12 gi|305663642|ref|YP_003859930.1| - 1.2e-102 343.5 0.0 1.6e-102 343.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|305663642|ref|YP_003859930.1| - 2e-73 246.1 0.0 3.8e-73 245.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|305663642|ref|YP_003859930.1| - 5.5e-40 136.9 0.0 9.7e-40 136.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|305663642|ref|YP_003859930.1| - 4.6e-27 95.1 0.0 8.2e-27 94.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.17 gi|305663642|ref|YP_003859930.1| - 1.6e-24 85.9 0.0 3.3e-24 84.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 DZR PF12773.7 gi|305663642|ref|YP_003859930.1| - 0.012 15.6 0.9 0.58 10.2 0.2 2.3 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|305663642|ref|YP_003859930.1| - 0.035 14.2 2.6 1.9 8.7 0.1 3.2 3 0 0 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|305663642|ref|YP_003859930.1| - 0.47 9.9 11.2 0.6 9.6 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|305663642|ref|YP_003859930.1| - 0.88 10.0 8.8 2.3 8.7 0.6 3.8 4 1 0 4 4 3 0 zinc-finger binding domain of transposase IS66 CpXC PF14353.6 gi|305663642|ref|YP_003859930.1| - 2.3 8.3 3.6 6.1 6.9 0.0 3.1 4 0 0 4 4 4 0 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|305663642|ref|YP_003859930.1| - 2.8 8.0 7.3 9.1 6.4 0.1 3.0 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-RING_7 PF02591.15 gi|305663642|ref|YP_003859930.1| - 3 8.1 6.6 22 5.3 0.0 3.2 3 0 0 3 3 3 0 C4-type zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|305663642|ref|YP_003859930.1| - 9.3 6.1 9.1 3.3 7.6 0.4 3.2 3 0 0 3 3 3 0 zinc-ribbon domain RNA_pol_Rpb2_6 PF00562.28 gi|305663643|ref|YP_003859931.1| - 1.1e-129 433.0 0.0 1.5e-129 432.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|305663643|ref|YP_003859931.1| - 1.3e-48 165.3 0.0 1.9e-48 164.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|305663643|ref|YP_003859931.1| - 5.4e-32 111.0 0.0 1e-31 110.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|305663643|ref|YP_003859931.1| - 1.5e-29 102.2 0.0 3.3e-29 101.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|305663643|ref|YP_003859931.1| - 5.3e-26 90.6 0.0 9.7e-26 89.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|305663643|ref|YP_003859931.1| - 2.5e-20 72.5 0.1 6.3e-20 71.2 0.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|305663643|ref|YP_003859931.1| - 8.3e-09 35.9 0.1 2.1e-08 34.6 0.1 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Dr_adhesin PF12393.8 gi|305663643|ref|YP_003859931.1| - 0.087 13.1 0.2 0.26 11.6 0.2 1.8 1 0 0 1 1 1 0 Dr family adhesin RNA_pol_Rpb5_C PF01191.19 gi|305663644|ref|YP_003859932.1| - 2.1e-30 104.4 0.0 2.4e-30 104.2 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain tRNA-synt_1g PF09334.11 gi|305663645|ref|YP_003859933.1| - 1.4e-90 303.9 0.5 8.7e-48 163.0 0.1 2.2 1 1 1 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|305663645|ref|YP_003859933.1| - 8.2e-30 103.6 0.2 5.5e-14 51.3 0.2 3.9 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|305663645|ref|YP_003859933.1| - 5.7e-15 55.4 0.8 7.2e-07 28.8 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|305663645|ref|YP_003859933.1| - 1e-06 28.0 0.0 3.2e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) Anticodon_1 PF08264.13 gi|305663645|ref|YP_003859933.1| - 1.3e-06 28.4 0.3 3.1e-06 27.2 0.3 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA DALR_1 PF05746.15 gi|305663645|ref|YP_003859933.1| - 0.12 12.6 1.2 0.58 10.3 0.2 2.6 3 0 0 3 3 3 0 DALR anticodon binding domain tRNA-synt_1b PF00579.25 gi|305663645|ref|YP_003859933.1| - 0.12 11.7 0.0 0.42 9.9 0.0 1.9 3 0 0 3 3 3 0 tRNA synthetases class I (W and Y) MFS_1 PF07690.16 gi|305663647|ref|YP_003859935.1| - 4.1e-12 45.7 49.6 9.5e-07 28.0 18.9 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily Peptidase_S49 PF01343.18 gi|305663647|ref|YP_003859935.1| - 0.91 9.5 4.3 1.1 9.2 0.1 2.1 2 0 0 2 2 2 0 Peptidase family S49 Frizzled PF01534.17 gi|305663648|ref|YP_003859936.1| - 0.019 14.0 0.9 0.024 13.7 0.9 1.2 1 0 0 1 1 1 0 Frizzled/Smoothened family membrane region DUF4191 PF13829.6 gi|305663652|ref|YP_003859940.1| - 4.9 6.4 6.9 6.8 6.0 6.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF996 PF06195.13 gi|305663653|ref|YP_003859941.1| - 4.9e-31 107.8 17.7 4.9e-31 107.8 17.7 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF996) MLANA PF14991.6 gi|305663653|ref|YP_003859941.1| - 2.2 8.6 5.5 9 6.6 5.5 2.1 1 1 0 1 1 1 0 Protein melan-A ExbD PF02472.16 gi|305663654|ref|YP_003859942.1| - 5.2 7.3 7.9 0.26 11.5 1.5 2.1 3 0 0 3 3 3 0 Biopolymer transport protein ExbD/TolR TpcC PF12642.7 gi|305663655|ref|YP_003859943.1| - 0.083 12.7 0.1 0.087 12.6 0.1 1.0 1 0 0 1 1 1 0 Conjugative transposon protein TcpC Herpes_UL92 PF03048.14 gi|305663658|ref|YP_003859946.1| - 0.062 13.1 2.2 0.071 12.9 2.2 1.2 1 0 0 1 1 1 0 UL92 family BET PF17035.5 gi|305663658|ref|YP_003859946.1| - 0.51 10.6 4.9 1.1 9.5 4.2 2.0 1 1 1 2 2 2 0 Bromodomain extra-terminal - transcription regulation zf-C2H2_9 PF16293.5 gi|305663659|ref|YP_003859947.1| - 0.00084 19.1 0.4 0.0016 18.2 0.4 1.5 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) zf-C2H2_4 PF13894.6 gi|305663659|ref|YP_003859947.1| - 0.0031 18.2 0.2 0.01 16.6 0.2 1.9 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|305663659|ref|YP_003859947.1| - 0.0036 17.7 0.2 0.011 16.1 0.2 1.9 1 0 0 1 1 1 1 Zinc finger, C2H2 type Mut7-C PF01927.16 gi|305663659|ref|YP_003859947.1| - 0.018 15.2 0.6 0.024 14.7 0.6 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-C2H2_jaz PF12171.8 gi|305663659|ref|YP_003859947.1| - 0.041 14.2 2.3 0.1 12.9 2.3 1.7 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding Cytochrome_C554 PF13435.6 gi|305663659|ref|YP_003859947.1| - 0.05 14.5 4.4 0.066 14.1 3.5 1.7 1 1 1 2 2 2 0 Cytochrome c554 and c-prime ThiI PF02568.14 gi|305663660|ref|YP_003859948.1| - 2.5e-62 210.0 0.0 3.9e-62 209.3 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|305663660|ref|YP_003859948.1| - 7.3e-22 78.0 0.4 1.7e-21 76.9 0.1 1.7 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|305663660|ref|YP_003859948.1| - 1.5e-06 27.9 0.0 0.00036 20.1 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|305663660|ref|YP_003859948.1| - 0.023 13.5 0.1 0.039 12.7 0.1 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Diphthami_syn_2 PF01902.17 gi|305663660|ref|YP_003859948.1| - 0.03 13.8 0.1 0.11 12.0 0.0 1.9 2 1 0 2 2 2 0 Diphthamide synthase GT87 PF09594.10 gi|305663661|ref|YP_003859949.1| - 2.3e-06 27.5 13.6 4.6e-06 26.5 13.6 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 87 PMT_2 PF13231.6 gi|305663661|ref|YP_003859949.1| - 0.01 16.0 24.3 0.01 16.0 24.3 4.2 3 1 1 4 4 4 0 Dolichyl-phosphate-mannose-protein mannosyltransferase GFO_IDH_MocA PF01408.22 gi|305663662|ref|YP_003859950.1| - 1.1e-19 71.4 0.1 2.3e-19 70.4 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|305663662|ref|YP_003859950.1| - 0.00014 22.4 0.1 0.00033 21.2 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|305663662|ref|YP_003859950.1| - 0.00048 20.5 0.0 0.0009 19.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|305663662|ref|YP_003859950.1| - 0.0078 16.3 0.7 0.014 15.6 0.3 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus BtpA PF03437.15 gi|305663662|ref|YP_003859950.1| - 0.012 15.1 0.3 0.25 10.7 0.0 2.2 2 0 0 2 2 2 0 BtpA family GFO_IDH_MocA_C PF02894.17 gi|305663662|ref|YP_003859950.1| - 0.014 15.4 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain PDH PF02153.17 gi|305663662|ref|YP_003859950.1| - 0.017 14.1 0.3 0.029 13.4 0.3 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase NAD_binding_3 PF03447.16 gi|305663662|ref|YP_003859950.1| - 0.029 15.0 0.0 0.054 14.1 0.0 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|305663662|ref|YP_003859950.1| - 0.72 9.8 2.7 12 5.9 2.6 2.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Zn_Tnp_IS1595 PF12760.7 gi|305663663|ref|YP_003859951.1| - 6.6e-10 38.8 2.9 3.9e-07 29.9 1.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|305663663|ref|YP_003859951.1| - 8.3e-08 32.0 5.1 9.6e-07 28.6 1.2 2.4 2 1 0 2 2 2 1 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.6 gi|305663663|ref|YP_003859951.1| - 3.9e-05 23.2 5.9 1.2 9.0 0.0 3.3 3 0 0 3 3 3 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|305663663|ref|YP_003859951.1| - 4.3e-05 23.5 3.0 2.4 8.3 0.0 3.3 3 0 0 3 3 3 1 Zinc ribbon domain UPF0547 PF10571.9 gi|305663663|ref|YP_003859951.1| - 7.8e-05 22.7 9.4 0.027 14.6 0.6 3.2 3 0 0 3 3 3 2 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.6 gi|305663663|ref|YP_003859951.1| - 0.00015 22.0 1.9 0.044 14.2 0.8 2.3 2 0 0 2 2 2 1 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.12 gi|305663663|ref|YP_003859951.1| - 0.00017 21.4 4.0 0.61 10.1 0.2 3.1 3 0 0 3 3 3 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|305663663|ref|YP_003859951.1| - 0.00018 21.4 0.8 0.031 14.3 0.1 2.3 2 1 0 2 2 2 1 Double zinc ribbon zf-ZPR1 PF03367.13 gi|305663663|ref|YP_003859951.1| - 0.00023 21.1 0.7 0.0046 16.8 0.1 2.1 2 0 0 2 2 2 1 ZPR1 zinc-finger domain DNA_RNApol_7kD PF03604.13 gi|305663663|ref|YP_003859951.1| - 0.00023 20.8 6.3 0.53 10.0 0.1 3.3 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.16 gi|305663663|ref|YP_003859951.1| - 0.00088 19.1 5.9 3.5 7.6 0.0 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|305663663|ref|YP_003859951.1| - 0.001 18.4 9.4 0.28 10.7 0.2 3.3 3 0 0 3 3 3 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|305663663|ref|YP_003859951.1| - 0.0016 18.3 4.3 0.81 9.7 2.7 2.8 2 1 0 2 2 2 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|305663663|ref|YP_003859951.1| - 0.0034 17.4 2.6 0.49 10.4 0.2 2.7 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|305663663|ref|YP_003859951.1| - 0.0034 17.3 5.4 7.7 6.5 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|305663663|ref|YP_003859951.1| - 0.0038 17.9 6.3 0.19 12.4 0.2 3.2 3 0 0 3 3 3 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.6 gi|305663663|ref|YP_003859951.1| - 0.0045 16.3 6.7 0.13 11.6 0.1 3.0 2 1 0 2 2 2 1 Transcription factor zinc-finger DUF2387 PF09526.10 gi|305663663|ref|YP_003859951.1| - 0.006 16.7 4.5 0.13 12.5 0.0 2.5 2 1 0 2 2 2 1 Probable metal-binding protein (DUF2387) Ribosomal_S27 PF01599.19 gi|305663663|ref|YP_003859951.1| - 0.008 16.3 1.7 0.4 10.9 0.0 3.1 3 0 0 3 3 3 1 Ribosomal protein S27a A2L_zn_ribbon PF08792.10 gi|305663663|ref|YP_003859951.1| - 0.01 15.5 5.3 1.7 8.4 0.1 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain Nudix_N_2 PF14803.6 gi|305663663|ref|YP_003859951.1| - 0.011 15.7 5.9 3.7 7.5 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal zf-H2C2_2 PF13465.6 gi|305663663|ref|YP_003859951.1| - 0.013 15.9 4.3 10 6.7 0.1 3.3 3 0 0 3 3 3 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.12 gi|305663663|ref|YP_003859951.1| - 0.014 14.9 4.4 4.2 7.0 0.1 3.2 3 0 0 3 3 3 0 TFIIB zinc-binding Anti-TRAP PF15777.5 gi|305663663|ref|YP_003859951.1| - 0.015 15.3 0.5 2.6 8.1 0.0 2.5 3 0 0 3 3 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein IBR PF01485.21 gi|305663663|ref|YP_003859951.1| - 0.018 15.3 2.6 0.91 9.8 2.6 2.2 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain Prok-RING_1 PF14446.6 gi|305663663|ref|YP_003859951.1| - 0.025 14.5 1.9 1 9.3 0.0 2.9 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 DUF3797 PF12677.7 gi|305663663|ref|YP_003859951.1| - 0.047 13.6 8.2 0.39 10.6 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF3797) YhfH PF14149.6 gi|305663663|ref|YP_003859951.1| - 0.051 13.6 4.9 7.6 6.6 0.0 3.2 3 0 0 3 3 3 0 YhfH-like protein Rubredoxin PF00301.20 gi|305663663|ref|YP_003859951.1| - 0.057 13.5 7.4 6.1 6.9 0.9 3.2 3 0 0 3 3 3 0 Rubredoxin CpXC PF14353.6 gi|305663663|ref|YP_003859951.1| - 0.076 13.1 3.7 10 6.2 0.0 3.0 2 1 0 2 2 2 0 CpXC protein Terminase_GpA PF05876.12 gi|305663663|ref|YP_003859951.1| - 0.098 11.2 1.4 0.22 10.0 0.7 1.7 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) DUF35_N PF12172.8 gi|305663663|ref|YP_003859951.1| - 0.12 12.3 4.5 5.4 7.0 0.1 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.11 gi|305663663|ref|YP_003859951.1| - 0.12 12.0 6.5 7.1 6.4 0.3 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-trcl PF13451.6 gi|305663663|ref|YP_003859951.1| - 0.13 12.2 1.9 4.8 7.2 1.1 2.8 2 1 0 2 2 2 0 Probable zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|305663663|ref|YP_003859951.1| - 0.13 12.2 2.2 0.89 9.6 0.7 2.3 2 1 0 2 2 2 0 zinc-ribbons Desulfoferrod_N PF06397.12 gi|305663663|ref|YP_003859951.1| - 0.14 11.8 0.9 0.14 11.8 0.9 2.9 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain Mu-like_Com PF10122.9 gi|305663663|ref|YP_003859951.1| - 0.15 11.5 4.4 6.6 6.3 0.0 2.9 3 0 0 3 3 3 0 Mu-like prophage protein Com zf-C4_Topoisom PF01396.19 gi|305663663|ref|YP_003859951.1| - 0.16 11.8 5.0 3.3 7.6 0.1 2.6 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger Zn_ribbon_SprT PF17283.2 gi|305663663|ref|YP_003859951.1| - 0.17 11.8 9.6 14 5.7 7.1 2.8 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|305663663|ref|YP_003859951.1| - 0.17 12.2 2.8 3.3 8.1 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon DUF2225 PF09986.9 gi|305663663|ref|YP_003859951.1| - 0.21 11.3 2.6 5.9 6.5 0.0 2.9 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) Cys_rich_KTR PF14205.6 gi|305663663|ref|YP_003859951.1| - 0.24 11.2 3.4 11 5.9 0.7 2.5 2 1 0 2 2 2 0 Cysteine-rich KTR zf-RING_7 PF02591.15 gi|305663663|ref|YP_003859951.1| - 0.28 11.4 4.7 5.8 7.2 0.1 3.1 3 0 0 3 3 3 0 C4-type zinc ribbon domain RecR PF02132.15 gi|305663663|ref|YP_003859951.1| - 0.31 10.6 5.0 15 5.2 0.2 3.2 3 0 0 3 3 3 0 RecR protein zf-IS66 PF13005.7 gi|305663663|ref|YP_003859951.1| - 0.32 11.4 8.8 11 6.5 0.5 3.4 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_13 PF09855.9 gi|305663663|ref|YP_003859951.1| - 0.35 11.1 8.4 7.6 6.8 0.0 3.1 2 1 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Rubredoxin_2 PF18073.1 gi|305663663|ref|YP_003859951.1| - 0.38 10.5 12.2 0.28 10.9 1.4 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain NOB1_Zn_bind PF08772.11 gi|305663663|ref|YP_003859951.1| - 0.42 10.8 4.4 12 6.2 0.1 3.0 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-Mss51 PF13824.6 gi|305663663|ref|YP_003859951.1| - 0.61 10.2 7.3 11 6.2 0.0 3.1 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_L32p PF01783.23 gi|305663663|ref|YP_003859951.1| - 0.61 10.4 5.1 14 6.0 0.0 3.1 3 0 0 3 3 3 0 Ribosomal L32p protein family DUF1610 PF07754.11 gi|305663663|ref|YP_003859951.1| - 0.97 9.5 7.8 10 6.2 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rpr2 PF04032.16 gi|305663663|ref|YP_003859951.1| - 1.1 9.6 4.4 12 6.3 4.4 2.3 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf_C2H2_10 PF18414.1 gi|305663663|ref|YP_003859951.1| - 1.3 8.6 10.8 0.95 9.1 0.9 2.8 3 0 0 3 3 3 0 C2H2 type zinc-finger Zn_Tnp_IS1 PF03811.13 gi|305663663|ref|YP_003859951.1| - 1.8 8.3 10.5 13 5.6 7.9 2.7 2 1 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_10 PF10058.9 gi|305663663|ref|YP_003859951.1| - 2.2 8.1 7.9 9.2 6.1 4.0 2.8 2 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ACC PF17848.1 gi|305663663|ref|YP_003859951.1| - 2.7 8.1 8.4 11 6.2 0.2 3.4 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain DUF1936 PF09151.10 gi|305663663|ref|YP_003859951.1| - 2.8 7.9 15.2 11 6.1 0.5 4.0 3 1 0 3 3 3 0 Domain of unknown function (DUF1936) zf-HIT PF04438.16 gi|305663663|ref|YP_003859951.1| - 2.9 7.8 9.4 18 5.3 0.3 3.1 3 0 0 3 3 3 0 HIT zinc finger Ogr_Delta PF04606.12 gi|305663663|ref|YP_003859951.1| - 3.7 7.6 7.4 43 4.2 3.9 2.8 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger zf_UBZ PF18439.1 gi|305663663|ref|YP_003859951.1| - 4 7.1 6.9 9.4 5.9 0.2 3.1 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger ADK_lid PF05191.14 gi|305663663|ref|YP_003859951.1| - 4.1 7.5 8.2 2.4 8.2 0.7 2.9 3 0 0 3 3 3 0 Adenylate kinase, active site lid zf-C2H2 PF00096.26 gi|305663663|ref|YP_003859951.1| - 7.7 7.2 10.6 51 4.6 2.1 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type Zn_ribbon_recom PF13408.6 gi|305663663|ref|YP_003859951.1| - 9.8 6.8 9.9 8.5 7.0 6.8 2.2 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain MMR_HSR1 PF01926.23 gi|305663664|ref|YP_003859952.1| - 1.5e-13 50.8 0.0 3e-10 40.2 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|305663664|ref|YP_003859952.1| - 9.3e-10 38.7 0.0 1.6e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|305663664|ref|YP_003859952.1| - 1.2e-06 28.1 0.1 5.6e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|305663664|ref|YP_003859952.1| - 1.3e-05 25.3 1.9 0.22 11.5 0.0 3.2 3 0 0 3 3 3 3 Dynamin family GTP_EFTU PF00009.27 gi|305663664|ref|YP_003859952.1| - 0.042 13.4 0.0 0.21 11.1 0.0 2.0 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|305663664|ref|YP_003859952.1| - 0.2 12.0 0.0 0.33 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RNA_Me_trans PF04252.13 gi|305663665|ref|YP_003859953.1| - 6.4e-06 25.9 0.0 1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase CTP_transf_like PF01467.26 gi|305663665|ref|YP_003859953.1| - 0.058 13.6 0.0 0.91 9.7 0.0 2.6 2 1 2 4 4 4 0 Cytidylyltransferase-like DprA_WH PF17782.1 gi|305663666|ref|YP_003859954.1| - 0.021 14.9 0.1 0.037 14.1 0.1 1.4 1 0 0 1 1 1 0 DprA winged helix domain TruD PF01142.18 gi|305663666|ref|YP_003859954.1| - 0.024 13.5 0.0 0.028 13.3 0.0 1.0 1 0 0 1 1 1 0 tRNA pseudouridine synthase D (TruD) HTH_20 PF12840.7 gi|305663666|ref|YP_003859954.1| - 0.041 14.0 0.0 0.098 12.7 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 gi|305663666|ref|YP_003859954.1| - 0.064 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|305663666|ref|YP_003859954.1| - 0.084 13.0 0.1 8.2 6.6 0.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Ribosomal_L15e PF00827.17 gi|305663668|ref|YP_003859956.1| - 2.4e-79 265.5 6.5 2.9e-79 265.2 6.5 1.2 1 0 0 1 1 1 1 Ribosomal L15 MMR_HSR1_C PF08438.10 gi|305663669|ref|YP_003859957.1| - 6.5e-28 97.5 0.0 1.1e-27 96.8 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|305663669|ref|YP_003859957.1| - 4.8e-20 71.8 0.0 1.3e-19 70.4 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|305663669|ref|YP_003859957.1| - 5.1e-13 48.9 0.1 1.4e-12 47.4 0.1 1.8 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|305663669|ref|YP_003859957.1| - 1.8e-06 27.6 0.0 0.0011 18.6 0.0 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|305663669|ref|YP_003859957.1| - 0.00038 20.6 0.1 0.22 11.7 0.0 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF933) Dynamin_N PF00350.23 gi|305663669|ref|YP_003859957.1| - 0.00058 19.9 0.6 0.01 15.9 0.0 2.7 2 1 1 3 3 3 1 Dynamin family RNA_binding PF01877.17 gi|305663670|ref|YP_003859958.1| - 1.6e-37 128.4 0.6 2.4e-37 127.8 0.6 1.2 1 0 0 1 1 1 1 RNA binding DUF4003 PF13170.6 gi|305663670|ref|YP_003859958.1| - 4.7e-05 22.9 1.7 5.5e-05 22.7 1.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4003) DUF884 PF05959.11 gi|305663670|ref|YP_003859958.1| - 0.019 14.6 0.3 1 9.0 0.1 2.1 1 1 1 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF884) SPOB_a PF14689.6 gi|305663670|ref|YP_003859958.1| - 0.083 12.6 0.3 0.28 10.9 0.0 2.0 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain RNase_P_Rpp14 PF01900.19 gi|305663672|ref|YP_003859960.1| - 3.7e-06 27.1 0.5 6.1e-06 26.4 0.5 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family PadR PF03551.14 gi|305663673|ref|YP_003859961.1| - 2.4e-06 27.4 1.4 2.9e-06 27.1 0.3 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|305663673|ref|YP_003859961.1| - 0.0014 19.2 0.5 0.0033 18.0 0.5 1.6 1 1 0 1 1 1 1 Replication terminator protein FUR PF01475.19 gi|305663673|ref|YP_003859961.1| - 0.0018 18.4 0.0 0.0024 18.0 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family TrmB PF01978.19 gi|305663673|ref|YP_003859961.1| - 0.0024 17.7 0.6 0.012 15.5 0.2 2.2 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|305663673|ref|YP_003859961.1| - 0.0092 15.7 0.2 0.08 12.7 0.2 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) Penicillinase_R PF03965.16 gi|305663673|ref|YP_003859961.1| - 0.022 15.1 0.0 0.032 14.6 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Inos-1-P_synth PF01658.17 gi|305663674|ref|YP_003859962.1| - 8e-26 90.4 0.0 1.4e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|305663674|ref|YP_003859962.1| - 3.5e-05 23.3 0.0 7.5e-05 22.3 0.0 1.4 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase UPF0020 PF01170.18 gi|305663675|ref|YP_003859963.1| - 1e-32 113.5 0.0 1.6e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|305663675|ref|YP_003859963.1| - 1.4e-18 67.4 0.1 3.3e-18 66.2 0.1 1.7 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|305663675|ref|YP_003859963.1| - 0.00055 19.8 0.1 0.017 14.9 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Radical_SAM PF04055.21 gi|305663675|ref|YP_003859963.1| - 0.0057 17.0 0.1 0.03 14.7 0.0 2.2 2 2 1 3 3 3 1 Radical SAM superfamily MTS PF05175.14 gi|305663675|ref|YP_003859963.1| - 0.11 12.1 0.1 1.1 8.8 0.0 2.1 1 1 1 2 2 2 0 Methyltransferase small domain Bet_v_1 PF00407.19 gi|305663676|ref|YP_003859964.1| - 0.02 14.8 0.7 0.23 11.3 0.0 2.7 3 0 0 3 3 3 0 Pathogenesis-related protein Bet v I family Aldolase_II PF00596.21 gi|305663678|ref|YP_003859966.1| - 2.7e-51 174.2 0.0 3.1e-51 174.0 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain WaaY PF06176.11 gi|305663678|ref|YP_003859966.1| - 0.047 13.3 0.1 0.065 12.8 0.1 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) PqqD PF05402.12 gi|305663678|ref|YP_003859966.1| - 0.16 12.3 0.7 0.53 10.6 0.1 2.2 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Phage_integrase PF00589.22 gi|305663679|ref|YP_003859967.1| - 1.2e-33 116.3 0.0 1.9e-33 115.7 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|305663679|ref|YP_003859967.1| - 6.6e-09 36.1 0.0 0.00014 22.3 0.0 2.5 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain zinc_ribbon_2 PF13240.6 gi|305663679|ref|YP_003859967.1| - 2.3e-08 33.5 2.6 3.6e-08 32.9 2.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|305663679|ref|YP_003859967.1| - 5.3e-07 28.8 3.6 9.3e-07 28.1 3.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Phage_int_SAM_1 PF02899.17 gi|305663679|ref|YP_003859967.1| - 1.4e-06 28.5 0.3 5.2e-05 23.5 0.2 2.9 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain DZR PF12773.7 gi|305663679|ref|YP_003859967.1| - 1.6e-06 28.0 0.3 2.4e-06 27.5 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|305663679|ref|YP_003859967.1| - 7e-06 26.0 4.6 1.2e-05 25.2 4.6 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|305663679|ref|YP_003859967.1| - 0.0003 21.5 0.1 0.00052 20.7 0.1 1.4 1 0 0 1 1 1 1 zinc-ribbon family Zn-ribbon_8 PF09723.10 gi|305663679|ref|YP_003859967.1| - 0.039 14.1 1.4 0.95 9.6 0.2 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Phage_int_SAM_6 PF18644.1 gi|305663679|ref|YP_003859967.1| - 0.071 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Phage integrase SAM-like domain zf-NADH-PPase PF09297.11 gi|305663679|ref|YP_003859967.1| - 0.11 12.2 6.8 0.11 12.1 0.7 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.8 gi|305663679|ref|YP_003859967.1| - 0.25 11.3 5.0 0.49 10.3 5.0 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RING_7 PF02591.15 gi|305663679|ref|YP_003859967.1| - 0.28 11.4 2.0 5.9 7.2 0.0 2.7 2 0 0 2 2 2 0 C4-type zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|305663679|ref|YP_003859967.1| - 1 9.4 4.4 10 6.2 2.6 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1595 PF12760.7 gi|305663679|ref|YP_003859967.1| - 1.7 8.7 4.2 1.3e+02 2.6 4.2 2.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain YacG PF03884.14 gi|305663679|ref|YP_003859967.1| - 3.1 7.6 5.8 6 6.7 5.8 1.5 1 0 0 1 1 1 0 DNA gyrase inhibitor YacG Nudix_N_2 PF14803.6 gi|305663679|ref|YP_003859967.1| - 7.1 6.6 6.2 5.3 7.0 0.6 2.5 2 0 0 2 2 2 0 Nudix N-terminal DUF4423 PF14394.6 gi|305663680|ref|YP_003859968.1| - 0.072 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) ORF_2_N PF18492.1 gi|305663680|ref|YP_003859968.1| - 0.16 12.1 0.0 0.21 11.8 0.0 1.1 1 0 0 1 1 1 0 Open reading frame 2 N-terminal domain eRF1_2 PF03464.15 gi|305663682|ref|YP_003859970.1| - 4.4e-40 137.1 0.2 7e-40 136.4 0.2 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|305663682|ref|YP_003859970.1| - 1.8e-16 60.6 0.3 2.4e-14 53.7 0.2 3.1 2 1 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|305663682|ref|YP_003859970.1| - 2.5e-14 53.7 0.0 4.8e-14 52.8 0.0 1.5 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|305663682|ref|YP_003859970.1| - 4.3e-13 49.7 0.0 9.1e-13 48.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|305663682|ref|YP_003859970.1| - 0.048 13.7 0.0 0.079 13.0 0.0 1.4 1 0 0 1 1 1 0 eRF1 domain 1 Clr5 PF14420.6 gi|305663682|ref|YP_003859970.1| - 0.05 13.8 0.0 0.2 11.9 0.0 2.1 1 1 0 1 1 1 0 Clr5 domain SpoU_sub_bind PF08032.12 gi|305663682|ref|YP_003859970.1| - 0.052 13.8 0.1 0.26 11.6 0.0 2.3 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding GAF_2 PF13185.6 gi|305663682|ref|YP_003859970.1| - 0.065 13.5 0.0 6.9 7.0 0.0 2.3 2 0 0 2 2 2 0 GAF domain baeRF_family2 PF18844.1 gi|305663682|ref|YP_003859970.1| - 0.19 11.8 0.0 0.54 10.3 0.0 1.7 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 KorB PF08535.10 gi|305663683|ref|YP_003859971.1| - 0.0055 16.7 0.1 0.02 14.9 0.0 1.9 2 0 0 2 2 2 1 KorB domain HTH_5 PF01022.20 gi|305663683|ref|YP_003859971.1| - 0.0072 16.2 0.0 0.027 14.3 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|305663683|ref|YP_003859971.1| - 0.011 16.1 0.2 2.6 8.5 0.1 2.6 2 0 0 2 2 2 0 Transcriptional regulator HTH_45 PF14947.6 gi|305663683|ref|YP_003859971.1| - 0.013 15.5 2.3 0.053 13.5 0.0 2.4 2 1 0 2 2 2 0 Winged helix-turn-helix S10_plectin PF03501.15 gi|305663683|ref|YP_003859971.1| - 0.14 12.2 3.1 0.45 10.6 0.1 2.7 2 1 0 2 2 2 0 Plectin/S10 domain PCMT PF01135.19 gi|305663684|ref|YP_003859972.1| - 3.9e-69 232.6 0.0 4.6e-69 232.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|305663684|ref|YP_003859972.1| - 2.2e-07 30.8 0.0 3.6e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|305663684|ref|YP_003859972.1| - 2.8e-06 27.2 0.0 4.4e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Fibrillarin PF01269.17 gi|305663684|ref|YP_003859972.1| - 0.0002 20.5 0.0 0.0003 20.0 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_24 PF13578.6 gi|305663684|ref|YP_003859972.1| - 0.031 15.3 0.0 0.052 14.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF2795 PF11387.8 gi|305663684|ref|YP_003859972.1| - 0.041 14.1 0.3 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) Methyltransf_23 PF13489.6 gi|305663684|ref|YP_003859972.1| - 0.073 12.9 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|305663684|ref|YP_003859972.1| - 0.082 13.6 0.0 0.2 12.4 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|305663684|ref|YP_003859972.1| - 0.085 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|305663684|ref|YP_003859972.1| - 0.1 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|305663684|ref|YP_003859972.1| - 0.15 11.1 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF371 PF04027.13 gi|305663685|ref|YP_003859973.1| - 7.1e-43 145.8 0.1 8.2e-43 145.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF2204 PF09970.9 gi|305663685|ref|YP_003859973.1| - 0.016 14.8 0.5 0.021 14.5 0.5 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) Bac_globin PF01152.21 gi|305663685|ref|YP_003859973.1| - 0.077 13.1 0.0 0.8 9.9 0.0 2.0 2 0 0 2 2 2 0 Bacterial-like globin Met_10 PF02475.16 gi|305663686|ref|YP_003859974.1| - 1.1e-40 139.5 0.2 1.9e-40 138.8 0.2 1.3 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|305663686|ref|YP_003859974.1| - 3.6e-10 39.6 0.0 7.8e-10 38.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|305663686|ref|YP_003859974.1| - 1.3e-05 24.8 0.1 2.1e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|305663686|ref|YP_003859974.1| - 2e-05 24.4 0.1 3.7e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|305663686|ref|YP_003859974.1| - 3.7e-05 24.4 0.0 9e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Trm5_N PF18093.1 gi|305663686|ref|YP_003859974.1| - 0.00057 19.7 1.9 0.0012 18.6 1.9 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Cons_hypoth95 PF03602.15 gi|305663686|ref|YP_003859974.1| - 0.0026 17.4 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltr_RsmB-F PF01189.17 gi|305663686|ref|YP_003859974.1| - 0.0093 15.6 0.0 0.075 12.7 0.0 2.0 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_15 PF09445.10 gi|305663686|ref|YP_003859974.1| - 0.068 12.7 0.0 0.16 11.5 0.0 1.7 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|305663686|ref|YP_003859974.1| - 0.088 13.6 0.0 0.23 12.2 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.17 gi|305663686|ref|YP_003859974.1| - 0.13 11.6 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase NAD_kinase PF01513.21 gi|305663687|ref|YP_003859975.1| - 3.5e-41 141.3 0.6 4.3e-41 141.0 0.6 1.2 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|305663687|ref|YP_003859975.1| - 0.003 17.2 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain PIN_6 PF17146.4 gi|305663688|ref|YP_003859976.1| - 3.1e-23 82.1 0.4 4.1e-23 81.7 0.4 1.1 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN PF01850.21 gi|305663688|ref|YP_003859976.1| - 0.00048 20.6 0.1 0.0012 19.4 0.1 1.6 1 1 0 1 1 1 1 PIN domain PIN_5 PF08745.11 gi|305663688|ref|YP_003859976.1| - 0.0091 15.4 1.2 0.16 11.3 0.1 2.2 1 1 1 2 2 2 2 PINc domain ribonuclease Methyltr_RsmB-F PF01189.17 gi|305663689|ref|YP_003859977.1| - 5.5e-47 160.0 0.0 7.4e-47 159.6 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|305663689|ref|YP_003859977.1| - 1.8e-17 63.1 1.9 4.8e-17 61.7 1.9 1.8 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|305663689|ref|YP_003859977.1| - 0.0014 18.9 0.2 0.0026 18.0 0.2 1.5 1 0 0 1 1 1 1 UPF0113 PUA domain Methyltr_RsmF_N PF17125.5 gi|305663689|ref|YP_003859977.1| - 0.0087 16.5 0.0 0.46 11.0 0.0 2.4 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|305663689|ref|YP_003859977.1| - 0.13 12.4 0.0 0.69 10.0 0.0 2.0 1 1 0 1 1 1 0 FtsJ-like methyltransferase ATPase PF06745.13 gi|305663690|ref|YP_003859978.1| - 1.4e-33 116.2 0.2 2.8e-33 115.2 0.2 1.4 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|305663690|ref|YP_003859978.1| - 8.9e-09 35.1 0.1 2.9e-07 30.1 0.0 2.5 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|305663690|ref|YP_003859978.1| - 1.8e-08 34.2 0.0 3.1e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|305663690|ref|YP_003859978.1| - 7.3e-08 31.5 0.2 1.7e-07 30.3 0.2 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_24 PF13479.6 gi|305663690|ref|YP_003859978.1| - 2.6e-06 27.3 0.0 5.1e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|305663690|ref|YP_003859978.1| - 1.4e-05 24.5 0.0 0.00017 20.9 0.0 2.1 2 0 0 2 2 2 1 Rad51 AAA PF00004.29 gi|305663690|ref|YP_003859978.1| - 0.00015 22.2 0.0 0.0024 18.3 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|305663690|ref|YP_003859978.1| - 0.00021 21.6 0.0 0.00062 20.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|305663690|ref|YP_003859978.1| - 0.00081 19.2 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|305663690|ref|YP_003859978.1| - 0.0013 18.9 0.0 0.0022 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|305663690|ref|YP_003859978.1| - 0.0024 17.9 0.1 0.0099 15.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain KTI12 PF08433.10 gi|305663690|ref|YP_003859978.1| - 0.0032 17.0 0.0 0.008 15.7 0.0 1.6 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_35 PF14516.6 gi|305663690|ref|YP_003859978.1| - 0.0077 15.1 0.0 0.018 13.9 0.0 1.6 1 0 0 1 1 1 1 AAA-like domain AAA_23 PF13476.6 gi|305663690|ref|YP_003859978.1| - 0.0097 16.4 0.1 0.022 15.3 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|305663690|ref|YP_003859978.1| - 0.012 16.1 0.0 0.021 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|305663690|ref|YP_003859978.1| - 0.012 15.5 0.0 0.027 14.4 0.0 1.7 2 0 0 2 2 1 0 NACHT domain AAA_10 PF12846.7 gi|305663690|ref|YP_003859978.1| - 0.017 14.0 0.0 0.028 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain ABC_tran PF00005.27 gi|305663690|ref|YP_003859978.1| - 0.02 15.4 0.0 0.036 14.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|305663690|ref|YP_003859978.1| - 0.037 14.6 0.0 0.1 13.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|305663690|ref|YP_003859978.1| - 0.041 13.7 0.0 0.3 10.8 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CbiA PF01656.23 gi|305663690|ref|YP_003859978.1| - 0.049 13.7 0.0 0.084 12.9 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain RNA_helicase PF00910.22 gi|305663690|ref|YP_003859978.1| - 0.05 14.0 0.1 0.26 11.7 0.0 2.2 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.22 gi|305663690|ref|YP_003859978.1| - 0.052 12.7 0.1 0.16 11.2 0.1 1.8 1 1 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|305663690|ref|YP_003859978.1| - 0.079 12.2 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.15 gi|305663690|ref|YP_003859978.1| - 0.098 12.6 0.1 0.22 11.4 0.1 1.7 1 1 0 1 1 1 0 NTPase DUF2075 PF09848.9 gi|305663690|ref|YP_003859978.1| - 0.11 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SSE PF00437.20 gi|305663690|ref|YP_003859978.1| - 0.13 11.3 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.19 gi|305663690|ref|YP_003859978.1| - 0.17 11.5 0.1 0.34 10.5 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|305663690|ref|YP_003859978.1| - 0.25 11.0 0.0 0.43 10.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF5320 PF17253.2 gi|305663691|ref|YP_003859979.1| - 0.0029 18.6 0.7 0.0097 17.0 0.7 2.0 1 1 0 1 1 1 1 Family of unknown function (DUF5320) XhlA PF10779.9 gi|305663691|ref|YP_003859979.1| - 0.012 15.8 2.3 0.016 15.4 2.3 1.2 1 0 0 1 1 1 0 Haemolysin XhlA DUF4140 PF13600.6 gi|305663691|ref|YP_003859979.1| - 0.019 15.4 0.1 0.026 15.0 0.1 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) APG6_N PF17675.1 gi|305663691|ref|YP_003859979.1| - 0.02 15.4 3.3 0.024 15.2 3.3 1.1 1 0 0 1 1 1 0 Apg6 coiled-coil region ApoO PF09769.9 gi|305663691|ref|YP_003859979.1| - 0.027 14.4 0.0 0.033 14.2 0.0 1.1 1 0 0 1 1 1 0 Apolipoprotein O Prefoldin_2 PF01920.20 gi|305663691|ref|YP_003859979.1| - 0.04 13.9 5.5 0.047 13.6 5.5 1.1 1 0 0 1 1 1 0 Prefoldin subunit DUF2205 PF10224.9 gi|305663691|ref|YP_003859979.1| - 0.05 13.6 0.7 0.061 13.3 0.7 1.1 1 0 0 1 1 1 0 Short coiled-coil protein JIP_LZII PF16471.5 gi|305663691|ref|YP_003859979.1| - 0.062 13.5 6.0 0.081 13.1 6.0 1.1 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II Fib_alpha PF08702.10 gi|305663691|ref|YP_003859979.1| - 0.064 13.4 0.7 0.075 13.2 0.7 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.12 gi|305663691|ref|YP_003859979.1| - 0.071 13.2 0.2 0.089 12.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Macoilin PF09726.9 gi|305663691|ref|YP_003859979.1| - 0.13 10.8 2.2 0.16 10.5 2.2 1.0 1 0 0 1 1 1 0 Macoilin family DivIC PF04977.15 gi|305663691|ref|YP_003859979.1| - 0.15 11.9 3.7 0.21 11.4 3.7 1.3 1 0 0 1 1 1 0 Septum formation initiator FlaC_arch PF05377.11 gi|305663691|ref|YP_003859979.1| - 0.15 12.4 2.1 0.21 12.0 2.1 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF3552 PF12072.8 gi|305663691|ref|YP_003859979.1| - 0.49 9.8 7.8 0.57 9.6 7.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) M PF02370.16 gi|305663691|ref|YP_003859979.1| - 10 7.1 8.7 5.4 7.9 2.0 2.3 1 1 1 2 2 2 0 M protein repeat DUF134 PF02001.16 gi|305663692|ref|YP_003859980.1| - 2.7e-19 69.5 0.0 3.6e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|305663692|ref|YP_003859980.1| - 9.1e-07 28.5 0.0 1.3e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|305663692|ref|YP_003859980.1| - 1.7e-05 24.2 0.0 3e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_1 PF00126.27 gi|305663692|ref|YP_003859980.1| - 0.0042 17.0 0.1 0.0062 16.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|305663692|ref|YP_003859980.1| - 0.0056 16.5 0.6 0.015 15.1 0.0 2.0 2 2 0 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.22 gi|305663692|ref|YP_003859980.1| - 0.013 15.6 0.1 0.024 14.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix DUF1492 PF07374.11 gi|305663692|ref|YP_003859980.1| - 0.015 15.4 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_Crp_2 PF13545.6 gi|305663692|ref|YP_003859980.1| - 0.019 15.0 0.5 0.03 14.3 0.1 1.7 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|305663692|ref|YP_003859980.1| - 0.019 14.3 0.1 0.07 12.5 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_17 PF12728.7 gi|305663692|ref|YP_003859980.1| - 0.025 14.8 0.2 0.37 11.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|305663692|ref|YP_003859980.1| - 0.042 13.9 0.1 0.088 12.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 gi|305663692|ref|YP_003859980.1| - 0.047 13.8 0.4 0.5 10.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|305663692|ref|YP_003859980.1| - 0.05 13.4 0.1 0.15 11.8 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|305663692|ref|YP_003859980.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor Rubrerythrin PF02915.17 gi|305663693|ref|YP_003859981.1| - 1.1e-05 25.8 1.9 7.2e-05 23.2 1.9 2.1 1 1 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|305663693|ref|YP_003859981.1| - 0.00026 20.8 0.0 0.025 14.4 0.0 2.3 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 VIT1 PF01988.19 gi|305663693|ref|YP_003859981.1| - 0.00041 20.3 27.0 0.015 15.2 10.3 2.8 2 1 1 3 3 3 2 VIT family DUF2207 PF09972.9 gi|305663693|ref|YP_003859981.1| - 8.1 5.1 10.1 2.4e+02 0.2 10.1 2.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Pex24p PF06398.11 gi|305663693|ref|YP_003859981.1| - 9.8 5.0 6.9 14 4.6 5.1 1.9 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin ThiC_Rad_SAM PF01964.18 gi|305663694|ref|YP_003859982.1| - 2.5e-170 566.8 0.0 2.8e-170 566.6 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family CbiK PF06180.11 gi|305663695|ref|YP_003859983.1| - 0.057 12.7 0.0 0.069 12.5 0.0 1.1 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) ATPase_2 PF01637.18 gi|305663696|ref|YP_003859984.1| - 1.6e-07 31.5 3.1 4.6e-07 30.0 3.1 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|305663696|ref|YP_003859984.1| - 0.00013 22.4 0.0 0.00021 21.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_35 PF14516.6 gi|305663696|ref|YP_003859984.1| - 0.00072 18.5 0.0 0.003 16.4 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_14 PF13173.6 gi|305663696|ref|YP_003859984.1| - 0.001 19.1 0.1 0.0045 17.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain PPV_E1_C PF00519.17 gi|305663696|ref|YP_003859984.1| - 0.01 14.7 0.0 0.017 14.0 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase T2SSE PF00437.20 gi|305663696|ref|YP_003859984.1| - 0.031 13.3 0.0 0.081 12.0 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein APS_kinase PF01583.20 gi|305663696|ref|YP_003859984.1| - 0.035 14.0 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase PhoH PF02562.16 gi|305663696|ref|YP_003859984.1| - 0.038 13.4 0.0 0.056 12.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein RecA PF00154.21 gi|305663696|ref|YP_003859984.1| - 0.062 12.8 0.0 0.16 11.4 0.0 1.5 1 1 0 1 1 1 0 recA bacterial DNA recombination protein ATP-grasp_5 PF13549.6 gi|305663696|ref|YP_003859984.1| - 0.098 12.1 0.1 0.26 10.7 0.0 1.7 2 0 0 2 2 2 0 ATP-grasp domain AAA_26 PF13500.6 gi|305663696|ref|YP_003859984.1| - 0.13 12.1 0.0 0.48 10.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|305663696|ref|YP_003859984.1| - 0.13 11.0 0.0 0.23 10.1 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein CbiA PF01656.23 gi|305663696|ref|YP_003859984.1| - 0.15 12.1 0.0 0.38 10.8 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SHMT PF00464.19 gi|305663697|ref|YP_003859985.1| - 1.1e-69 235.0 0.0 1.5e-69 234.5 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|305663697|ref|YP_003859985.1| - 2e-10 40.4 0.0 2.9e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|305663697|ref|YP_003859985.1| - 3.3e-08 33.1 0.0 6.9e-08 32.1 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|305663697|ref|YP_003859985.1| - 1.4e-06 27.9 0.1 2.7e-06 26.9 0.0 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.13 gi|305663697|ref|YP_003859985.1| - 0.00077 18.6 0.0 0.0013 17.8 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|305663697|ref|YP_003859985.1| - 0.048 12.2 0.1 0.1 11.1 0.1 1.6 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Cren7 PF11520.8 gi|305663698|ref|YP_003859986.1| - 1.7e-33 114.3 2.7 1.8e-33 114.2 2.7 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 Fe_dep_repr_C PF02742.15 gi|305663699|ref|YP_003859987.1| - 3.3e-23 81.6 0.5 1e-22 80.0 0.1 1.9 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|305663699|ref|YP_003859987.1| - 2.4e-20 72.5 0.0 4.5e-20 71.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|305663699|ref|YP_003859987.1| - 2.1e-07 30.4 0.0 3.9e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|305663699|ref|YP_003859987.1| - 2.1e-07 30.7 0.0 3.5e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|305663699|ref|YP_003859987.1| - 5e-06 26.4 0.0 1e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|305663699|ref|YP_003859987.1| - 1e-05 25.3 0.0 2.1e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|305663699|ref|YP_003859987.1| - 1.8e-05 24.5 0.0 3.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|305663699|ref|YP_003859987.1| - 5.4e-05 22.8 0.1 0.00025 20.7 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.12 gi|305663699|ref|YP_003859987.1| - 6.5e-05 22.8 0.0 0.00018 21.4 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|305663699|ref|YP_003859987.1| - 0.00015 21.6 0.0 0.00027 20.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|305663699|ref|YP_003859987.1| - 0.00016 21.4 0.0 0.00033 20.4 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|305663699|ref|YP_003859987.1| - 0.00021 21.0 0.0 0.00047 19.9 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.20 gi|305663699|ref|YP_003859987.1| - 0.00031 21.0 0.0 0.0009 19.6 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator AbiEi_4 PF13338.6 gi|305663699|ref|YP_003859987.1| - 0.00031 20.8 0.0 0.00061 19.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin GntR PF00392.21 gi|305663699|ref|YP_003859987.1| - 0.00049 19.7 0.0 0.0014 18.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|305663699|ref|YP_003859987.1| - 0.00067 19.5 0.0 0.0016 18.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|305663699|ref|YP_003859987.1| - 0.00073 19.3 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|305663699|ref|YP_003859987.1| - 0.0014 18.3 0.0 0.0029 17.3 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_20 PF12840.7 gi|305663699|ref|YP_003859987.1| - 0.0014 18.6 0.0 0.0034 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|305663699|ref|YP_003859987.1| - 0.0025 17.6 0.0 0.0055 16.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_7 PF02796.15 gi|305663699|ref|YP_003859987.1| - 0.003 17.6 0.5 0.46 10.6 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain of resolvase LacI PF00356.21 gi|305663699|ref|YP_003859987.1| - 0.003 17.3 0.0 0.0058 16.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Crp PF00325.20 gi|305663699|ref|YP_003859987.1| - 0.0084 15.7 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_29 PF13551.6 gi|305663699|ref|YP_003859987.1| - 0.0087 16.1 0.0 0.053 13.6 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|305663699|ref|YP_003859987.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Phage_terminase PF10668.9 gi|305663699|ref|YP_003859987.1| - 0.011 15.7 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 Phage terminase small subunit Sigma70_r4_2 PF08281.12 gi|305663699|ref|YP_003859987.1| - 0.012 15.3 0.0 0.057 13.1 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 CENP-B_N PF04218.13 gi|305663699|ref|YP_003859987.1| - 0.013 15.1 0.0 0.054 13.1 0.0 2.0 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain HTH_28 PF13518.6 gi|305663699|ref|YP_003859987.1| - 0.015 15.4 0.0 0.1 12.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|305663699|ref|YP_003859987.1| - 0.017 15.0 0.0 0.12 12.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AraC PF00165.23 gi|305663699|ref|YP_003859987.1| - 0.021 14.9 0.0 0.037 14.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_40 PF14493.6 gi|305663699|ref|YP_003859987.1| - 0.021 15.2 0.0 0.045 14.2 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|305663699|ref|YP_003859987.1| - 0.024 14.8 0.0 0.12 12.6 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain FeoA PF04023.14 gi|305663699|ref|YP_003859987.1| - 0.026 14.8 0.0 0.065 13.5 0.0 1.6 1 0 0 1 1 1 0 FeoA domain HxlR PF01638.17 gi|305663699|ref|YP_003859987.1| - 0.027 14.3 0.0 0.051 13.4 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|305663699|ref|YP_003859987.1| - 0.029 14.9 0.0 0.056 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1670 PF07900.11 gi|305663699|ref|YP_003859987.1| - 0.04 13.3 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) Phage_CI_repr PF07022.13 gi|305663699|ref|YP_003859987.1| - 0.055 13.6 0.0 0.061 13.4 0.0 1.3 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain GerE PF00196.19 gi|305663699|ref|YP_003859987.1| - 0.062 12.9 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_6 PF01418.17 gi|305663699|ref|YP_003859987.1| - 0.065 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family FaeA PF04703.12 gi|305663699|ref|YP_003859987.1| - 0.065 13.6 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein TnsD PF15978.5 gi|305663699|ref|YP_003859987.1| - 0.1 11.6 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Tn7-like transposition protein D IF2_N PF04760.15 gi|305663699|ref|YP_003859987.1| - 0.14 12.0 0.0 0.51 10.2 0.0 1.9 2 0 0 2 2 1 0 Translation initiation factor IF-2, N-terminal region HTH_3 PF01381.22 gi|305663699|ref|YP_003859987.1| - 0.15 12.1 0.0 0.49 10.5 0.0 1.9 1 1 1 2 2 1 0 Helix-turn-helix RPA_C PF08784.11 gi|305663699|ref|YP_003859987.1| - 0.16 12.6 0.0 0.29 11.8 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_17 PF12728.7 gi|305663699|ref|YP_003859987.1| - 0.16 12.1 0.8 0.57 10.4 0.0 2.3 3 1 0 3 3 1 0 Helix-turn-helix domain SgrR_N PF12793.7 gi|305663699|ref|YP_003859987.1| - 0.19 12.0 0.0 0.28 11.4 0.0 1.3 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term FeoB_N PF02421.18 gi|305663700|ref|YP_003859988.1| - 1.6e-47 160.9 0.0 2.6e-47 160.3 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|305663700|ref|YP_003859988.1| - 1.2e-24 86.7 25.9 1.4e-21 76.9 7.5 3.4 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|305663700|ref|YP_003859988.1| - 1.9e-17 63.4 0.0 3.5e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|305663700|ref|YP_003859988.1| - 3.7e-07 29.7 0.3 3.7e-07 29.7 0.3 3.8 5 0 0 5 5 4 1 Ferrous iron transport protein B C terminus FeoB_Cyto PF17910.1 gi|305663700|ref|YP_003859988.1| - 4.5e-05 23.9 0.0 0.00022 21.7 0.0 2.2 3 0 0 3 3 2 1 FeoB cytosolic helical domain RsgA_GTPase PF03193.16 gi|305663700|ref|YP_003859988.1| - 0.00066 19.6 0.0 0.2 11.6 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase SRPRB PF09439.10 gi|305663700|ref|YP_003859988.1| - 0.0012 18.3 0.0 0.0021 17.5 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|305663700|ref|YP_003859988.1| - 0.0023 17.3 0.0 0.0046 16.3 0.0 1.5 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|305663700|ref|YP_003859988.1| - 0.024 14.7 0.8 0.061 13.4 0.2 1.9 1 1 1 2 2 2 0 Dynamin family IIGP PF05049.13 gi|305663700|ref|YP_003859988.1| - 0.039 13.0 0.0 0.064 12.3 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) MeaB PF03308.16 gi|305663700|ref|YP_003859988.1| - 0.049 12.6 0.1 8.1 5.3 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MAAL_C PF07476.11 gi|305663700|ref|YP_003859988.1| - 0.083 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus PduV-EutP PF10662.9 gi|305663700|ref|YP_003859988.1| - 0.15 11.8 0.0 0.51 10.1 0.0 2.0 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.22 gi|305663700|ref|YP_003859988.1| - 0.18 11.4 0.0 5.5 6.6 0.0 2.2 2 0 0 2 2 2 0 Ras family GTP_EFTU PF00009.27 gi|305663700|ref|YP_003859988.1| - 0.21 11.1 0.0 1.3 8.6 0.0 2.2 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain FeoA PF04023.14 gi|305663701|ref|YP_003859989.1| - 2.1e-12 47.1 0.4 2.5e-12 46.9 0.4 1.0 1 0 0 1 1 1 1 FeoA domain ATPase_2 PF01637.18 gi|305663702|ref|YP_003859990.1| - 3.3e-53 181.0 0.2 5e-53 180.4 0.2 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|305663702|ref|YP_003859990.1| - 4.8e-06 27.0 0.0 8.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|305663702|ref|YP_003859990.1| - 3.1e-05 23.3 0.0 5.6e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_22 PF13401.6 gi|305663702|ref|YP_003859990.1| - 5.6e-05 23.4 0.0 0.00011 22.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305663702|ref|YP_003859990.1| - 0.0012 19.3 0.0 0.0019 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Connexin50 PF03509.14 gi|305663702|ref|YP_003859990.1| - 0.0018 19.0 0.0 0.0035 18.1 0.0 1.4 1 0 0 1 1 1 1 Gap junction alpha-8 protein (Cx50) AAA_30 PF13604.6 gi|305663702|ref|YP_003859990.1| - 0.004 16.9 0.0 0.0058 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_PrkA PF08298.11 gi|305663702|ref|YP_003859990.1| - 0.0072 15.3 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 PrkA AAA domain AAA_23 PF13476.6 gi|305663702|ref|YP_003859990.1| - 0.013 16.0 0.0 0.028 14.9 0.0 1.7 2 1 0 2 2 1 0 AAA domain AAA_28 PF13521.6 gi|305663702|ref|YP_003859990.1| - 0.018 15.3 0.0 0.059 13.6 0.0 1.8 1 1 1 2 2 2 0 AAA domain UPF0146 PF03686.13 gi|305663702|ref|YP_003859990.1| - 0.019 14.8 0.1 0.7 9.8 0.3 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0146) DAP3 PF10236.9 gi|305663702|ref|YP_003859990.1| - 0.038 13.1 0.0 0.1 11.8 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 RNA_helicase PF00910.22 gi|305663702|ref|YP_003859990.1| - 0.04 14.3 0.0 0.1 13.0 0.0 1.7 2 0 0 2 2 1 0 RNA helicase AAA_14 PF13173.6 gi|305663702|ref|YP_003859990.1| - 0.049 13.7 0.3 0.12 12.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|305663702|ref|YP_003859990.1| - 0.062 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|305663702|ref|YP_003859990.1| - 0.064 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|305663702|ref|YP_003859990.1| - 0.075 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|305663702|ref|YP_003859990.1| - 0.088 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|305663702|ref|YP_003859990.1| - 0.094 12.0 0.0 0.17 11.1 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin SRPRB PF09439.10 gi|305663702|ref|YP_003859990.1| - 0.11 12.0 0.1 0.61 9.5 0.0 2.2 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit AAA_5 PF07728.14 gi|305663702|ref|YP_003859990.1| - 0.15 12.0 0.0 0.36 10.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) HTH_45 PF14947.6 gi|305663703|ref|YP_003859991.1| - 6.8e-13 48.4 0.0 7.8e-13 48.2 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|305663703|ref|YP_003859991.1| - 0.00017 21.1 0.6 0.00028 20.4 0.6 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|305663703|ref|YP_003859991.1| - 0.00021 21.1 0.0 0.00031 20.6 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|305663703|ref|YP_003859991.1| - 0.00087 19.1 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|305663703|ref|YP_003859991.1| - 0.0015 18.2 0.0 0.0016 18.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) RPA_C PF08784.11 gi|305663703|ref|YP_003859991.1| - 0.01 16.5 0.0 0.015 15.9 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal HemN_C PF06969.16 gi|305663703|ref|YP_003859991.1| - 0.03 14.4 0.1 0.075 13.1 0.0 1.6 1 1 1 2 2 2 0 HemN C-terminal domain HTH_28 PF13518.6 gi|305663703|ref|YP_003859991.1| - 0.033 14.3 0.0 0.054 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|305663703|ref|YP_003859991.1| - 0.05 13.4 0.6 0.081 12.8 0.1 1.6 2 0 0 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.20 gi|305663703|ref|YP_003859991.1| - 0.12 12.7 0.0 0.16 12.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator EAP30 PF04157.16 gi|305663703|ref|YP_003859991.1| - 0.16 11.2 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family Fer4 PF00037.27 gi|305663704|ref|YP_003859992.1| - 1e-11 44.1 15.1 2e-08 33.7 3.3 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|305663704|ref|YP_003859992.1| - 2.5e-10 39.8 13.1 3.6e-07 29.9 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|305663704|ref|YP_003859992.1| - 5.8e-10 38.8 12.3 4.8e-06 26.4 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|305663704|ref|YP_003859992.1| - 5.8e-09 35.9 9.8 8.4e-07 29.0 11.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|305663704|ref|YP_003859992.1| - 1.2e-08 35.0 9.9 1.6e-08 34.6 9.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|305663704|ref|YP_003859992.1| - 7.1e-08 32.9 12.0 1.3e-07 32.1 12.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|305663704|ref|YP_003859992.1| - 3.2e-07 30.4 8.4 4.2e-07 30.0 8.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|305663704|ref|YP_003859992.1| - 1.9e-05 25.5 9.0 0.026 15.4 1.1 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|305663704|ref|YP_003859992.1| - 0.00028 21.2 1.4 0.00028 21.2 1.4 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|305663704|ref|YP_003859992.1| - 0.0011 19.5 10.8 0.035 14.7 10.8 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|305663704|ref|YP_003859992.1| - 0.0023 18.6 4.9 0.02 15.6 4.9 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|305663704|ref|YP_003859992.1| - 0.0045 17.8 5.2 0.098 13.5 0.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|305663704|ref|YP_003859992.1| - 0.018 15.6 11.2 0.12 13.0 2.3 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|305663704|ref|YP_003859992.1| - 0.023 15.6 16.3 0.74 10.9 5.0 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|305663704|ref|YP_003859992.1| - 0.031 14.5 8.4 0.47 10.7 8.5 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|305663704|ref|YP_003859992.1| - 0.079 13.1 7.6 0.13 12.4 4.2 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_8 PF13183.6 gi|305663704|ref|YP_003859992.1| - 0.11 13.0 12.1 14 6.2 2.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF3079 PF11278.8 gi|305663704|ref|YP_003859992.1| - 0.15 11.9 5.6 1 9.2 0.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3079) TusA PF01206.17 gi|305663706|ref|YP_003859994.1| - 7.2e-09 35.3 0.0 8.7e-09 35.1 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA UBX PF00789.20 gi|305663706|ref|YP_003859994.1| - 0.0082 16.3 0.0 0.0097 16.1 0.0 1.2 1 0 0 1 1 1 1 UBX domain DUF2249 PF10006.9 gi|305663706|ref|YP_003859994.1| - 0.085 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) eRF1_1 PF03463.15 gi|305663707|ref|YP_003859995.1| - 3.7e-20 72.2 0.1 6.2e-20 71.5 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|305663707|ref|YP_003859995.1| - 6.1e-17 62.1 0.5 1.3e-16 61.1 0.1 1.7 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|305663707|ref|YP_003859995.1| - 0.001 19.4 0.0 0.0043 17.4 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 2 baeRF_family12 PF18856.1 gi|305663707|ref|YP_003859995.1| - 0.046 14.3 0.0 0.088 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 12 Radical_SAM PF04055.21 gi|305663708|ref|YP_003859996.1| - 4.9e-25 88.8 0.2 9.3e-25 87.9 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily DUF2002 PF09400.10 gi|305663708|ref|YP_003859996.1| - 0.075 13.1 0.1 0.16 12.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2002) Jiraiya PF15038.6 gi|305663709|ref|YP_003859997.1| - 0.0044 16.5 0.7 0.0044 16.5 0.7 2.6 3 0 0 3 3 3 1 Jiraiya SpoIIM PF01944.17 gi|305663709|ref|YP_003859997.1| - 1.1 9.3 18.0 0.045 13.8 9.5 2.1 1 1 1 2 2 2 0 Stage II sporulation protein M EamA PF00892.20 gi|305663710|ref|YP_003859998.1| - 2.1e-31 108.9 51.1 1.2e-18 67.6 24.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family CRT-like PF08627.10 gi|305663710|ref|YP_003859998.1| - 1 8.3 19.2 0.057 12.4 6.8 2.5 2 1 1 3 3 3 0 CRT-like, chloroquine-resistance transporter-like TMEM234 PF10639.9 gi|305663710|ref|YP_003859998.1| - 3.6 7.7 16.6 0.14 12.2 2.9 2.8 3 1 0 3 3 3 0 Putative transmembrane family 234 DUF373 PF04123.13 gi|305663710|ref|YP_003859998.1| - 5.4 6.4 26.2 0.36 10.2 14.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF373) Polbeta PF18765.1 gi|305663711|ref|YP_003859999.1| - 4.7e-05 23.4 0.0 6.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF104 PF01954.16 gi|305663712|ref|YP_003860000.1| - 3.2e-11 43.5 1.8 3.9e-11 43.2 1.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Polbeta PF18765.1 gi|305663713|ref|YP_003860001.1| - 1.8e-05 24.7 0.3 2.6e-05 24.2 0.3 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Peptidase_S24 PF00717.23 gi|305663716|ref|YP_003860004.1| - 6.1e-05 22.9 0.1 0.00027 20.8 0.2 2.1 2 0 0 2 2 2 1 Peptidase S24-like NDUF_B12 PF08122.12 gi|305663716|ref|YP_003860004.1| - 1.9 8.6 3.9 31 4.7 1.2 2.7 2 1 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family ZirS_C PF16583.5 gi|305663718|ref|YP_003860006.1| - 0.00012 21.7 0.5 0.00016 21.2 0.5 1.3 1 0 0 1 1 1 1 Zinc-regulated secreted antivirulence protein C-terminal domain BT1 PF03092.16 gi|305663718|ref|YP_003860006.1| - 0.09 11.0 0.4 0.11 10.7 0.4 1.1 1 0 0 1 1 1 0 BT1 family Cytomega_UL20A PF05984.12 gi|305663718|ref|YP_003860006.1| - 0.14 12.5 1.4 1.4 9.3 0.0 2.4 2 1 0 2 2 2 0 Cytomegalovirus UL20A protein Coat_X PF07552.11 gi|305663718|ref|YP_003860006.1| - 7.2 6.5 8.3 1.3 8.9 0.2 3.2 3 0 0 3 3 3 0 Spore Coat Protein X and V domain Baculo_PEP_C PF04513.12 gi|305663719|ref|YP_003860007.1| - 0.001 19.1 0.0 0.0024 17.9 0.0 1.5 2 0 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4795 PF16043.5 gi|305663719|ref|YP_003860007.1| - 0.0018 17.9 4.9 0.0018 17.9 4.9 2.4 2 1 1 3 3 3 2 Domain of unknown function (DUF4795) Sec3_C PF09763.9 gi|305663719|ref|YP_003860007.1| - 0.0032 15.9 0.6 0.0053 15.2 0.4 1.4 1 1 0 1 1 1 1 Exocyst complex component Sec3 Vac_Fusion PF02346.16 gi|305663719|ref|YP_003860007.1| - 0.0061 16.2 5.8 0.15 11.7 0.6 2.9 2 0 0 2 2 2 1 Chordopoxvirus multifunctional envelope protein A27 KxDL PF10241.9 gi|305663719|ref|YP_003860007.1| - 0.0071 16.6 4.0 0.11 12.8 0.6 2.6 2 1 1 3 3 2 1 Uncharacterized conserved protein Exonuc_VII_L PF02601.15 gi|305663719|ref|YP_003860007.1| - 0.0092 15.6 0.2 0.01 15.4 0.2 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit HAUS6_N PF14661.6 gi|305663719|ref|YP_003860007.1| - 0.015 14.9 1.8 0.036 13.6 1.8 1.6 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus GAS PF13851.6 gi|305663719|ref|YP_003860007.1| - 0.015 14.6 6.0 0.014 14.7 3.2 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding HMMR_N PF15905.5 gi|305663719|ref|YP_003860007.1| - 0.026 14.0 2.9 0.043 13.3 2.9 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Spc7 PF08317.11 gi|305663719|ref|YP_003860007.1| - 0.03 13.2 2.7 0.053 12.4 2.7 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Prefoldin PF02996.17 gi|305663719|ref|YP_003860007.1| - 0.037 13.9 3.2 0.27 11.2 0.3 3.0 3 0 0 3 3 3 0 Prefoldin subunit EzrA PF06160.12 gi|305663719|ref|YP_003860007.1| - 0.038 12.2 7.7 0.19 9.9 5.7 2.4 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA DUF1664 PF07889.12 gi|305663719|ref|YP_003860007.1| - 0.056 13.5 0.4 0.21 11.7 0.1 1.9 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) RmuC PF02646.16 gi|305663719|ref|YP_003860007.1| - 0.091 11.9 3.1 0.11 11.6 0.3 2.3 2 2 1 3 3 3 0 RmuC family Laminin_II PF06009.12 gi|305663719|ref|YP_003860007.1| - 0.096 12.7 1.6 0.67 10.0 0.4 2.5 2 1 0 2 2 2 0 Laminin Domain II DUF16 PF01519.16 gi|305663719|ref|YP_003860007.1| - 0.1 13.1 2.6 0.13 12.7 0.9 2.0 2 1 0 2 2 1 0 Protein of unknown function DUF16 OmpH PF03938.14 gi|305663719|ref|YP_003860007.1| - 0.1 12.9 3.2 0.075 13.4 1.3 1.6 2 0 0 2 2 1 0 Outer membrane protein (OmpH-like) XhlA PF10779.9 gi|305663719|ref|YP_003860007.1| - 0.12 12.6 12.8 0.4 10.9 1.2 2.7 3 0 0 3 3 2 0 Haemolysin XhlA MtrG PF04210.13 gi|305663719|ref|YP_003860007.1| - 0.12 12.2 3.9 1.3 9.0 0.2 3.0 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G Mis14 PF08641.12 gi|305663719|ref|YP_003860007.1| - 0.15 12.4 5.6 3.2 8.1 0.1 2.5 2 0 0 2 2 2 0 Kinetochore protein Mis14 like TelA PF05816.11 gi|305663719|ref|YP_003860007.1| - 0.15 11.1 2.8 0.6 9.1 2.9 1.9 1 1 0 1 1 1 0 Toxic anion resistance protein (TelA) TPR_MLP1_2 PF07926.12 gi|305663719|ref|YP_003860007.1| - 0.21 11.7 4.2 0.14 12.2 1.2 2.0 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Jnk-SapK_ap_N PF09744.9 gi|305663719|ref|YP_003860007.1| - 0.21 11.8 6.9 0.2 11.9 3.6 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Prefoldin_2 PF01920.20 gi|305663719|ref|YP_003860007.1| - 0.23 11.5 5.4 1.6 8.7 2.5 2.8 2 1 0 2 2 2 0 Prefoldin subunit Syntaxin_2 PF14523.6 gi|305663719|ref|YP_003860007.1| - 0.24 11.8 2.3 0.52 10.7 0.2 2.4 2 1 1 3 3 2 0 Syntaxin-like protein Syntaxin-6_N PF09177.11 gi|305663719|ref|YP_003860007.1| - 0.27 11.8 2.3 1.6 9.4 1.0 2.5 2 1 0 2 2 2 0 Syntaxin 6, N-terminal LUC7 PF03194.15 gi|305663719|ref|YP_003860007.1| - 0.38 10.4 4.0 0.69 9.5 4.0 1.3 1 0 0 1 1 1 0 LUC7 N_terminus FapA PF03961.13 gi|305663719|ref|YP_003860007.1| - 0.41 9.2 3.4 0.41 9.2 2.2 1.5 1 1 0 1 1 1 0 Flagellar Assembly Protein A FlaC_arch PF05377.11 gi|305663719|ref|YP_003860007.1| - 0.43 11.0 4.5 1.9 9.0 0.4 3.2 2 1 2 4 4 4 0 Flagella accessory protein C (FlaC) DUF3552 PF12072.8 gi|305663719|ref|YP_003860007.1| - 0.51 9.7 9.6 1.2 8.6 9.6 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF3782 PF12644.7 gi|305663719|ref|YP_003860007.1| - 0.52 10.5 8.7 27 5.0 7.4 3.3 2 1 0 2 2 1 0 Protein of unknown function (DUF3782) TMF_TATA_bd PF12325.8 gi|305663719|ref|YP_003860007.1| - 0.71 10.1 11.3 3.6 7.8 8.0 2.6 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Atg14 PF10186.9 gi|305663719|ref|YP_003860007.1| - 0.91 8.5 4.0 2 7.5 4.0 1.6 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Nup54 PF13874.6 gi|305663719|ref|YP_003860007.1| - 1 9.5 5.5 3.7 7.7 0.2 2.7 2 1 0 3 3 3 0 Nucleoporin complex subunit 54 Tropomyosin_1 PF12718.7 gi|305663719|ref|YP_003860007.1| - 1.4 9.1 14.3 0.092 12.9 7.7 2.3 2 1 1 3 3 3 0 Tropomyosin like THOC7 PF05615.13 gi|305663719|ref|YP_003860007.1| - 3.7 7.8 12.4 0.8 10.0 8.7 1.8 2 1 0 2 2 1 0 Tho complex subunit 7 Apolipoprotein PF01442.18 gi|305663719|ref|YP_003860007.1| - 4.8 7.0 10.2 5.4 6.8 7.0 2.2 2 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain Osmo_CC PF08946.10 gi|305663719|ref|YP_003860007.1| - 5.2 7.4 7.4 10 6.4 0.3 3.2 1 1 1 2 2 2 0 Osmosensory transporter coiled coil YabA PF06156.13 gi|305663719|ref|YP_003860007.1| - 6.4 7.5 8.7 11 6.8 0.5 3.1 3 1 1 4 4 3 0 Initiation control protein YabA ABC_tran_CTD PF16326.5 gi|305663719|ref|YP_003860007.1| - 7.1 7.0 13.0 0.91 9.8 0.5 3.2 2 1 1 3 3 2 0 ABC transporter C-terminal domain Spc24 PF08286.11 gi|305663719|ref|YP_003860007.1| - 7.8 6.8 9.3 0.8 10.0 2.4 2.6 2 1 1 3 3 2 0 Spc24 subunit of Ndc80 ADIP PF11559.8 gi|305663719|ref|YP_003860007.1| - 9 6.4 8.9 6.7 6.8 0.7 3.0 3 1 1 4 4 3 0 Afadin- and alpha -actinin-Binding DUF2818 PF10993.8 gi|305663721|ref|YP_003860009.1| - 0.034 14.7 3.9 0.047 14.3 3.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2818) NADH_dh_m_C1 PF15088.6 gi|305663721|ref|YP_003860009.1| - 0.053 13.2 0.5 0.2 11.3 0.1 2.0 2 0 0 2 2 2 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial CPBP PF02517.16 gi|305663724|ref|YP_003860012.1| - 2.2e-17 63.2 0.3 4.3e-17 62.3 0.1 1.4 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease Pyridox_ox_2 PF12900.7 gi|305663724|ref|YP_003860012.1| - 0.095 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase VHL PF01847.16 gi|305663725|ref|YP_003860013.1| - 0.011 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 VHL beta domain DZR PF12773.7 gi|305663726|ref|YP_003860014.1| - 0.016 15.2 1.3 0.026 14.5 1.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-FPG_IleRS PF06827.14 gi|305663726|ref|YP_003860014.1| - 0.03 14.2 0.7 0.55 10.2 0.1 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Rubredoxin PF00301.20 gi|305663726|ref|YP_003860014.1| - 0.045 13.8 5.0 0.72 9.9 1.9 2.2 2 0 0 2 2 2 0 Rubredoxin HypA PF01155.19 gi|305663726|ref|YP_003860014.1| - 0.05 13.6 0.6 0.13 12.3 0.1 1.8 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2072 PF09845.9 gi|305663726|ref|YP_003860014.1| - 0.074 13.3 0.0 0.087 13.1 0.0 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-C2HC5 PF06221.13 gi|305663726|ref|YP_003860014.1| - 0.074 13.0 0.2 0.13 12.2 0.2 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.12 gi|305663726|ref|YP_003860014.1| - 0.13 11.8 2.9 9.2 5.9 0.7 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RanBP PF00641.18 gi|305663726|ref|YP_003860014.1| - 0.35 10.2 6.6 1.9 7.9 0.7 2.4 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn-ribbon_8 PF09723.10 gi|305663726|ref|YP_003860014.1| - 0.47 10.6 4.3 1.4 9.1 4.3 1.9 1 1 0 1 1 1 0 Zinc ribbon domain HalOD2 PF18547.1 gi|305663726|ref|YP_003860014.1| - 0.67 9.9 5.0 1.2 9.1 0.2 2.1 1 1 1 2 2 2 0 Halobacterial output domain 2 zf-ribbon_3 PF13248.6 gi|305663726|ref|YP_003860014.1| - 1.1 8.7 5.1 0.52 9.8 0.9 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Ferritin PF00210.24 gi|305663727|ref|YP_003860015.1| - 1.9e-46 157.5 6.1 2.2e-46 157.3 6.1 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|305663727|ref|YP_003860015.1| - 0.0021 18.5 5.7 0.0027 18.1 5.7 1.2 1 0 0 1 1 1 1 Rubrerythrin Acid_phosphat_B PF03767.14 gi|305663727|ref|YP_003860015.1| - 0.03 13.9 0.1 0.055 13.0 0.1 1.4 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Lipoprotein_10 PF03202.13 gi|305663727|ref|YP_003860015.1| - 0.03 14.7 0.2 0.07 13.6 0.0 1.7 2 0 0 2 2 2 0 Putative mycoplasma lipoprotein, C-terminal region XendoU PF09412.10 gi|305663727|ref|YP_003860015.1| - 0.042 13.1 0.7 0.27 10.4 0.3 2.0 1 1 1 2 2 2 0 Endoribonuclease XendoU Metallophos_2 PF12850.7 gi|305663728|ref|YP_003860016.1| - 9.5e-29 100.7 0.0 1.2e-28 100.4 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|305663728|ref|YP_003860016.1| - 1.8e-15 58.0 4.0 2e-14 54.6 4.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|305663728|ref|YP_003860016.1| - 1.6e-05 23.5 1.2 0.0017 16.8 0.5 2.1 1 1 1 2 2 2 2 Firmicute fructose-1,6-bisphosphatase tRNA_m1G_MT PF01746.21 gi|305663728|ref|YP_003860016.1| - 0.062 13.0 0.0 0.093 12.4 0.0 1.2 1 0 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase Pyr_redox_2 PF07992.14 gi|305663729|ref|YP_003860017.1| - 8e-52 176.3 0.2 9.1e-52 176.1 0.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|305663729|ref|YP_003860017.1| - 1.7e-29 103.1 0.6 2.2e-23 83.0 0.0 2.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|305663729|ref|YP_003860017.1| - 2.1e-20 73.0 2.6 3.7e-13 49.8 0.2 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|305663729|ref|YP_003860017.1| - 2.2e-13 50.1 8.8 4.4e-06 26.0 1.0 5.0 3 2 2 5 5 5 3 FAD binding domain HI0933_like PF03486.14 gi|305663729|ref|YP_003860017.1| - 2e-11 43.2 1.2 0.0013 17.5 0.6 3.2 3 0 0 3 3 3 3 HI0933-like protein FAD_binding_3 PF01494.19 gi|305663729|ref|YP_003860017.1| - 1.9e-10 40.5 0.3 2.1e-07 30.5 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|305663729|ref|YP_003860017.1| - 3.1e-09 36.9 0.4 2.1e-06 27.9 0.1 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|305663729|ref|YP_003860017.1| - 1.3e-08 34.8 5.3 0.00027 20.7 1.0 3.5 3 1 0 3 3 3 3 FAD dependent oxidoreductase Thi4 PF01946.17 gi|305663729|ref|YP_003860017.1| - 1.2e-07 31.2 1.7 0.00012 21.4 0.2 2.6 3 0 0 3 3 3 2 Thi4 family FAD_oxidored PF12831.7 gi|305663729|ref|YP_003860017.1| - 1.5e-07 31.1 5.3 0.00039 19.9 0.7 3.8 3 1 1 4 4 4 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|305663729|ref|YP_003860017.1| - 1.4e-05 24.4 6.3 0.00013 21.2 0.2 3.4 4 1 1 5 5 5 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|305663729|ref|YP_003860017.1| - 1.8e-05 24.0 0.5 0.013 14.6 0.6 3.0 3 0 0 3 3 3 1 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|305663729|ref|YP_003860017.1| - 4.2e-05 23.9 0.1 0.13 12.7 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding K_oxygenase PF13434.6 gi|305663729|ref|YP_003860017.1| - 0.00065 18.9 0.3 1 8.4 0.0 3.3 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|305663729|ref|YP_003860017.1| - 0.0011 17.9 1.0 0.3 9.9 0.4 2.2 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|305663729|ref|YP_003860017.1| - 0.0011 18.9 0.4 5.9 6.9 0.3 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding FMO-like PF00743.19 gi|305663729|ref|YP_003860017.1| - 0.0035 15.8 0.0 0.0069 14.9 0.0 1.5 1 1 0 1 1 1 1 Flavin-binding monooxygenase-like Shikimate_DH PF01488.20 gi|305663729|ref|YP_003860017.1| - 0.022 14.8 0.0 9.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|305663729|ref|YP_003860017.1| - 0.034 13.4 0.2 0.65 9.2 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|305663729|ref|YP_003860017.1| - 0.045 13.0 0.9 3.5 6.8 0.0 2.4 2 1 0 3 3 3 0 Flavin containing amine oxidoreductase ApbA PF02558.16 gi|305663729|ref|YP_003860017.1| - 0.18 11.4 2.2 7.8 6.1 0.0 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA MCRA PF06100.11 gi|305663729|ref|YP_003860017.1| - 1.3 7.7 3.0 1.6 7.4 0.3 2.0 2 0 0 2 2 2 0 MCRA family DUF1122 PF06557.11 gi|305663730|ref|YP_003860018.1| - 4.8e-79 263.9 0.9 5.6e-79 263.6 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) TPP_enzyme_C PF02775.21 gi|305663731|ref|YP_003860019.1| - 1.4e-31 109.3 0.2 2.1e-31 108.8 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|305663731|ref|YP_003860019.1| - 2e-18 66.3 0.4 4.2e-18 65.2 0.4 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Mannosyl_trans3 PF11051.8 gi|305663731|ref|YP_003860019.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Mannosyltransferase putative POR_N PF01855.19 gi|305663732|ref|YP_003860020.1| - 4.7e-64 216.3 0.0 6.8e-64 215.8 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|305663732|ref|YP_003860020.1| - 2.9e-30 105.7 0.0 6.7e-30 104.4 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|305663732|ref|YP_003860020.1| - 9.1e-08 32.3 0.4 2.9e-07 30.7 0.0 2.0 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|305663732|ref|YP_003860020.1| - 2e-06 27.7 0.0 4.3e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|305663732|ref|YP_003860020.1| - 0.00021 21.0 0.1 0.00065 19.4 0.1 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain zf-C2H2_jaz PF12171.8 gi|305663733|ref|YP_003860021.1| - 0.039 14.2 0.3 0.084 13.2 0.3 1.6 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-C2HE PF16278.5 gi|305663733|ref|YP_003860021.1| - 0.1 13.1 0.2 0.25 11.8 0.2 1.7 1 1 0 1 1 1 0 C2HE / C2H2 / C2HC zinc-binding finger Helicase_C_2 PF13307.6 gi|305663733|ref|YP_003860021.1| - 0.13 12.5 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Helicase C-terminal domain Transpos_assoc PF13963.6 gi|305663733|ref|YP_003860021.1| - 0.18 12.1 1.7 0.71 10.2 0.1 2.2 1 1 2 3 3 3 0 Transposase-associated domain zf-C2H2 PF00096.26 gi|305663733|ref|YP_003860021.1| - 0.2 12.2 0.1 0.2 12.2 0.1 2.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type Fer4_13 PF13370.6 gi|305663734|ref|YP_003860022.1| - 5.1e-13 49.4 2.3 6.4e-13 49.0 2.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|305663734|ref|YP_003860022.1| - 6.3e-12 46.0 0.9 7.3e-12 45.9 0.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|305663734|ref|YP_003860022.1| - 0.0013 18.8 3.8 0.0079 16.3 3.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|305663734|ref|YP_003860022.1| - 0.0022 17.7 8.5 0.21 11.5 0.3 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|305663734|ref|YP_003860022.1| - 0.0093 16.4 0.1 0.014 15.9 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|305663734|ref|YP_003860022.1| - 0.013 15.6 3.7 0.091 12.9 3.8 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|305663734|ref|YP_003860022.1| - 0.019 15.6 3.6 0.5 11.0 4.8 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|305663734|ref|YP_003860022.1| - 0.17 12.0 7.4 0.44 10.7 0.3 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|305663734|ref|YP_003860022.1| - 1.1 9.5 7.4 0.5 10.6 2.6 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Rubrerythrin PF02915.17 gi|305663735|ref|YP_003860023.1| - 4.9e-28 98.2 2.9 6.3e-28 97.9 2.9 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|305663735|ref|YP_003860023.1| - 4.4e-06 26.7 0.7 8.9e-06 25.7 0.7 1.5 1 1 0 1 1 1 1 Ferritin-like domain Rubredoxin PF00301.20 gi|305663735|ref|YP_003860023.1| - 0.025 14.6 4.9 2.2 8.3 1.0 2.4 2 0 0 2 2 2 0 Rubredoxin Arc_PepC_II PF06847.11 gi|305663735|ref|YP_003860023.1| - 0.055 14.0 0.1 0.19 12.2 0.1 1.7 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminus Type II zf-Sec23_Sec24 PF04810.15 gi|305663735|ref|YP_003860023.1| - 0.056 13.5 1.0 0.23 11.6 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger YceG_bac PF14266.6 gi|305663735|ref|YP_003860023.1| - 0.059 12.3 0.0 0.071 12.0 0.0 1.1 1 0 0 1 1 1 0 Putative component of 'biosynthetic module' Zn-C2H2_12 PF18112.1 gi|305663735|ref|YP_003860023.1| - 0.099 13.1 5.9 7.8 7.1 0.2 3.4 3 0 0 3 3 3 0 Autophagy receptor zinc finger-C2H2 domain TF_Zn_Ribbon PF08271.12 gi|305663735|ref|YP_003860023.1| - 0.1 12.1 3.5 3 7.4 0.2 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding DUF3797 PF12677.7 gi|305663735|ref|YP_003860023.1| - 0.12 12.3 2.6 0.59 10.1 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) PhnA_Zn_Ribbon PF08274.12 gi|305663735|ref|YP_003860023.1| - 0.19 11.7 2.0 0.51 10.3 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon ADK_lid PF05191.14 gi|305663735|ref|YP_003860023.1| - 0.2 11.7 3.7 0.44 10.6 3.7 1.6 1 0 0 1 1 1 0 Adenylate kinase, active site lid Prim_Zn_Ribbon PF08273.12 gi|305663735|ref|YP_003860023.1| - 0.2 11.9 3.1 6.5 7.1 0.3 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase OrfB_Zn_ribbon PF07282.11 gi|305663735|ref|YP_003860023.1| - 0.2 11.6 0.9 3.9 7.5 0.0 2.2 1 1 0 2 2 2 0 Putative transposase DNA-binding domain DUF3039 PF11238.8 gi|305663735|ref|YP_003860023.1| - 0.34 10.7 3.3 0.93 9.3 3.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) Cys_rich_CPCC PF14206.6 gi|305663735|ref|YP_003860023.1| - 0.4 10.5 2.6 0.74 9.7 2.6 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC zinc_ribbon_2 PF13240.6 gi|305663735|ref|YP_003860023.1| - 0.86 9.4 3.6 2.1 8.2 3.6 1.7 1 1 0 1 1 1 0 zinc-ribbon domain HalOD2 PF18547.1 gi|305663735|ref|YP_003860023.1| - 1.1 9.2 3.8 2.2 8.2 0.3 2.3 1 1 1 2 2 2 0 Halobacterial output domain 2 zf-MIZ PF02891.20 gi|305663735|ref|YP_003860023.1| - 1.2 8.9 5.1 0.61 9.9 0.2 2.2 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger DNA_ligase_ZBD PF03119.16 gi|305663735|ref|YP_003860023.1| - 1.4 9.1 7.5 6.6 6.9 0.4 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RRN7 PF11781.8 gi|305663735|ref|YP_003860023.1| - 2.4 7.9 5.0 8.3 6.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-RanBP PF00641.18 gi|305663735|ref|YP_003860023.1| - 2.6 7.5 4.7 4.9 6.6 0.4 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn-ribbon_8 PF09723.10 gi|305663735|ref|YP_003860023.1| - 4.9 7.4 5.9 59 3.9 6.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Rad50_zn_hook PF04423.14 gi|305663735|ref|YP_003860023.1| - 8.1 6.4 6.4 21 5.1 1.2 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif CBS PF00571.28 gi|305663736|ref|YP_003860024.1| - 2.2e-32 111.3 8.6 1.3e-16 60.8 0.4 2.0 2 0 0 2 2 2 2 CBS domain sCache_3_2 PF17203.4 gi|305663736|ref|YP_003860024.1| - 0.0075 16.4 0.3 2.6 8.2 0.0 2.4 2 1 0 2 2 2 2 Single cache domain 3 IF3_N PF05198.16 gi|305663736|ref|YP_003860024.1| - 0.0093 16.2 1.5 1.4 9.2 0.1 2.6 2 1 0 2 2 2 2 Translation initiation factor IF-3, N-terminal domain Ribosomal_L9_C PF03948.14 gi|305663736|ref|YP_003860024.1| - 0.016 15.7 0.4 0.058 13.9 0.1 2.0 1 1 1 2 2 2 0 Ribosomal protein L9, C-terminal domain CAAD PF14159.6 gi|305663736|ref|YP_003860024.1| - 0.027 14.3 0.0 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase TANGO2 PF05742.12 gi|305663737|ref|YP_003860025.1| - 6.6e-13 49.3 0.0 8.1e-13 49.0 0.0 1.0 1 0 0 1 1 1 1 Transport and Golgi organisation 2 DFP PF04127.15 gi|305663738|ref|YP_003860026.1| - 2.5e-56 190.5 0.0 1.5e-55 187.9 0.0 1.9 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|305663738|ref|YP_003860026.1| - 3.5e-32 111.4 0.2 5e-32 110.8 0.2 1.2 1 0 0 1 1 1 1 Flavoprotein BPD_transp_1 PF00528.22 gi|305663739|ref|YP_003860027.1| - 1.4e-09 38.0 11.4 1.4e-09 38.0 11.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|305663740|ref|YP_003860028.1| - 9.6e-27 93.9 18.5 9.6e-27 93.9 18.5 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|305663741|ref|YP_003860029.1| - 1.1e-76 258.3 0.0 1.5e-76 257.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle UBA_4 PF14555.6 gi|305663741|ref|YP_003860029.1| - 0.1 12.4 0.0 0.36 10.7 0.0 1.9 1 0 0 1 1 1 0 UBA-like domain PhoU PF01895.19 gi|305663742|ref|YP_003860030.1| - 5.4e-10 39.6 1.9 9.4e-10 38.8 0.6 2.0 2 1 0 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|305663742|ref|YP_003860030.1| - 8.2e-07 28.8 0.2 3e-06 27.0 0.2 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Cys_Met_Meta_PP PF01053.20 gi|305663743|ref|YP_003860031.1| - 9.7e-110 366.7 0.0 1.1e-109 366.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|305663743|ref|YP_003860031.1| - 0.00033 19.9 0.0 0.00044 19.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.16 gi|305663743|ref|YP_003860031.1| - 0.0035 16.2 0.1 0.0053 15.6 0.1 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein MHB PF16525.5 gi|305663743|ref|YP_003860031.1| - 0.21 11.9 0.0 2.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Haemophore, haem-binding Aminotran_5 PF00266.19 gi|305663743|ref|YP_003860031.1| - 0.21 10.5 0.0 0.43 9.5 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-V HTH_3 PF01381.22 gi|305663744|ref|YP_003860032.1| - 5.9e-05 23.0 0.1 0.00032 20.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|305663744|ref|YP_003860032.1| - 0.0019 18.2 0.2 0.011 15.8 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Cro PF09048.10 gi|305663744|ref|YP_003860032.1| - 0.01 15.9 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 0 Cro MetOD2 PF18548.1 gi|305663744|ref|YP_003860032.1| - 0.017 15.2 0.0 0.042 13.9 0.0 1.6 1 1 1 2 2 2 0 Metanogen output domain 2 TetR_N PF00440.23 gi|305663744|ref|YP_003860032.1| - 0.036 13.9 0.0 0.14 12.0 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_31 PF13560.6 gi|305663744|ref|YP_003860032.1| - 0.045 14.1 0.0 0.11 12.8 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|305663744|ref|YP_003860032.1| - 0.046 13.6 0.0 0.23 11.4 0.0 2.1 2 1 1 3 3 3 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|305663744|ref|YP_003860032.1| - 0.096 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain TusA PF01206.17 gi|305663745|ref|YP_003860033.1| - 0.032 14.1 0.1 0.048 13.5 0.1 1.3 1 1 0 1 1 1 0 Sulfurtransferase TusA IHHNV_capsid PF16530.5 gi|305663745|ref|YP_003860033.1| - 0.13 11.4 0.0 0.14 11.3 0.0 1.0 1 0 0 1 1 1 0 Infectious hypodermal and haematopoietic necrosis virus, capsid Aminotran_5 PF00266.19 gi|305663746|ref|YP_003860034.1| - 1.2e-64 218.7 0.0 5.9e-64 216.3 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|305663746|ref|YP_003860034.1| - 1.8e-06 27.5 0.0 2.2e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.16 gi|305663746|ref|YP_003860034.1| - 0.047 12.5 0.0 0.063 12.1 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein Met_gamma_lyase PF06838.11 gi|305663746|ref|YP_003860034.1| - 0.053 12.0 1.1 0.086 11.4 1.1 1.4 1 1 0 1 1 1 0 Methionine gamma-lyase NifU_N PF01592.16 gi|305663747|ref|YP_003860035.1| - 8.9e-38 129.3 0.0 1.1e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 NifU-like N terminal domain TusA PF01206.17 gi|305663748|ref|YP_003860036.1| - 3.4e-14 52.4 0.0 4e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Fer4_6 PF12837.7 gi|305663749|ref|YP_003860037.1| - 1.8e-10 40.4 8.0 1.7e-07 31.0 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|305663749|ref|YP_003860037.1| - 3.9e-10 39.1 11.5 4.5e-06 26.2 5.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|305663749|ref|YP_003860037.1| - 3e-09 36.8 13.2 3.5e-07 30.2 8.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|305663749|ref|YP_003860037.1| - 5.6e-09 36.0 6.3 7.1e-09 35.7 6.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|305663749|ref|YP_003860037.1| - 6.1e-09 36.3 13.4 3.4e-07 30.7 7.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|305663749|ref|YP_003860037.1| - 1.3e-08 34.4 7.5 1.6e-05 24.7 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|305663749|ref|YP_003860037.1| - 2.8e-08 34.6 1.5 0.0083 17.0 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|305663749|ref|YP_003860037.1| - 2.4e-07 30.8 5.3 3.7e-07 30.2 5.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|305663749|ref|YP_003860037.1| - 6.1e-05 23.2 9.1 0.0034 17.8 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|305663749|ref|YP_003860037.1| - 6.6e-05 23.4 2.2 0.043 14.4 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|305663749|ref|YP_003860037.1| - 6.8e-05 23.5 13.4 0.03 15.3 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|305663749|ref|YP_003860037.1| - 0.0002 22.0 8.1 0.0012 19.5 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|305663749|ref|YP_003860037.1| - 0.00029 21.6 6.5 0.015 16.1 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|305663749|ref|YP_003860037.1| - 0.0036 17.7 7.4 0.14 12.6 7.4 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|305663749|ref|YP_003860037.1| - 0.0061 17.1 8.9 0.02 15.4 2.7 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_19 PF06902.11 gi|305663749|ref|YP_003860037.1| - 0.78 9.9 6.5 21 5.3 6.5 2.6 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_18 PF13746.6 gi|305663749|ref|YP_003860037.1| - 1.4 9.2 9.1 1.8 8.8 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain AFP PF02420.15 gi|305663749|ref|YP_003860037.1| - 1.9 9.1 5.0 6.4 7.5 5.0 1.9 1 0 0 1 1 1 0 Insect antifreeze protein repeat YacG PF03884.14 gi|305663750|ref|YP_003860038.1| - 0.31 10.8 5.9 0.45 10.3 5.9 1.4 1 1 0 1 1 1 0 DNA gyrase inhibitor YacG HD_3 PF13023.6 gi|305663752|ref|YP_003860040.1| - 8.3e-18 64.9 0.0 1.2e-17 64.3 0.0 1.4 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|305663752|ref|YP_003860040.1| - 5.5e-13 49.1 0.0 7.2e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|305663752|ref|YP_003860040.1| - 1.6e-05 25.2 0.2 4e-05 23.8 0.2 1.7 1 1 0 1 1 1 1 HD domain Phage_TAC_3 PF06896.11 gi|305663752|ref|YP_003860040.1| - 0.0019 18.8 0.7 0.0081 16.7 0.2 2.0 1 1 1 2 2 2 1 Phage tail assembly chaperone proteins, TAC HDOD PF08668.12 gi|305663752|ref|YP_003860040.1| - 0.006 16.1 0.0 0.0084 15.6 0.0 1.3 1 0 0 1 1 1 1 HDOD domain DUF3349 PF11829.8 gi|305663752|ref|YP_003860040.1| - 0.16 12.7 0.1 0.53 11.1 0.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3349) YHS PF04945.13 gi|305663753|ref|YP_003860041.1| - 8.9e-20 70.5 1.9 1e-19 70.4 1.9 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|305663753|ref|YP_003860041.1| - 0.00036 20.8 3.3 0.00056 20.2 3.3 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain FAP206 PF12018.8 gi|305663753|ref|YP_003860041.1| - 0.0023 17.5 0.2 0.0025 17.3 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function zf-FCS PF06467.14 gi|305663753|ref|YP_003860041.1| - 0.0056 16.6 1.7 0.0068 16.3 1.7 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|305663753|ref|YP_003860041.1| - 0.11 12.5 3.9 0.55 10.3 3.9 2.0 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) E1-E2_ATPase PF00122.20 gi|305663754|ref|YP_003860042.1| - 1.4e-48 164.9 0.6 3.2e-48 163.6 0.6 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|305663754|ref|YP_003860042.1| - 3.4e-42 145.1 0.1 5.4e-42 144.5 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|305663754|ref|YP_003860042.1| - 2.6e-12 47.0 0.0 7.7e-12 45.5 0.0 1.9 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|305663754|ref|YP_003860042.1| - 1.2e-08 35.0 3.2 0.00013 21.8 0.2 2.8 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|305663754|ref|YP_003860042.1| - 1.7e-07 31.5 1.0 2.2e-06 27.9 1.0 2.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|305663754|ref|YP_003860042.1| - 0.00029 21.3 0.1 0.0011 19.4 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Methyltransf_24 PF13578.6 gi|305663755|ref|YP_003860043.1| - 3.4e-10 40.9 0.0 5e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|305663755|ref|YP_003860043.1| - 3.2e-09 36.3 0.0 3.8e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_25 PF13649.6 gi|305663755|ref|YP_003860043.1| - 0.00028 21.5 0.0 0.00039 21.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|305663755|ref|YP_003860043.1| - 0.0015 17.9 0.0 0.0026 17.1 0.0 1.4 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_31 PF13847.6 gi|305663755|ref|YP_003860043.1| - 0.0016 18.3 0.1 0.0019 18.0 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|305663755|ref|YP_003860043.1| - 0.0019 18.2 0.0 0.0026 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0146 PF03686.13 gi|305663755|ref|YP_003860043.1| - 0.0023 17.8 0.7 0.23 11.4 0.1 2.2 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0146) Methyltr_RsmB-F PF01189.17 gi|305663755|ref|YP_003860043.1| - 0.0045 16.6 0.0 0.0079 15.8 0.0 1.4 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Cons_hypoth95 PF03602.15 gi|305663755|ref|YP_003860043.1| - 0.015 14.9 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CMAS PF02353.20 gi|305663755|ref|YP_003860043.1| - 0.016 14.6 0.1 0.02 14.2 0.1 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|305663755|ref|YP_003860043.1| - 0.035 13.8 0.1 0.058 13.1 0.1 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|305663755|ref|YP_003860043.1| - 0.04 13.4 0.0 0.06 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase MTS PF05175.14 gi|305663755|ref|YP_003860043.1| - 0.064 12.8 0.0 0.091 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PRMT5 PF05185.16 gi|305663755|ref|YP_003860043.1| - 0.14 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase AA_kinase PF00696.28 gi|305663758|ref|YP_003860046.1| - 1.8e-28 99.8 0.1 8.2e-28 97.6 0.1 1.8 1 1 0 1 1 1 1 Amino acid kinase family Nitroreductase PF00881.24 gi|305663759|ref|YP_003860047.1| - 4.6e-31 108.1 2.3 9.3e-17 61.6 0.2 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|305663759|ref|YP_003860047.1| - 1.3e-14 54.3 0.1 2.1e-06 27.4 0.1 2.8 1 1 2 3 3 3 3 Putative TM nitroreductase MS_channel PF00924.18 gi|305663760|ref|YP_003860048.1| - 2.5e-57 193.8 7.7 4e-57 193.1 7.7 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel UPF0182 PF03699.13 gi|305663760|ref|YP_003860048.1| - 0.13 10.3 2.6 0.16 10.1 2.6 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF432 PF04254.13 gi|305663761|ref|YP_003860049.1| - 1.8e-22 79.8 0.9 4.2e-22 78.6 0.3 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF432) SpoIIM PF01944.17 gi|305663762|ref|YP_003860050.1| - 6.2e-29 101.0 20.7 7.8e-29 100.7 20.7 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M NOB1_Zn_bind PF08772.11 gi|305663763|ref|YP_003860051.1| - 0.0076 16.4 0.8 0.01 16.0 0.8 1.2 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-LITAF-like PF10601.9 gi|305663763|ref|YP_003860051.1| - 0.015 15.5 1.9 0.028 14.7 1.9 1.4 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain RecR PF02132.15 gi|305663763|ref|YP_003860051.1| - 0.034 13.7 3.6 0.73 9.4 0.3 2.1 1 1 1 2 2 2 0 RecR protein Terminase_GpA PF05876.12 gi|305663763|ref|YP_003860051.1| - 0.2 10.1 1.1 0.37 9.3 1.0 1.5 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) tRNA-synt_1d PF00750.19 gi|305663765|ref|YP_003860053.1| - 1.7e-31 109.5 1.1 1.6e-21 76.7 0.2 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|305663765|ref|YP_003860053.1| - 9e-29 100.1 0.1 3.7e-28 98.1 0.1 2.1 1 0 0 1 1 1 1 DALR anticodon binding domain tRNA-synt_1e PF01406.19 gi|305663765|ref|YP_003860053.1| - 0.019 14.4 0.2 0.33 10.3 0.1 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|305663765|ref|YP_003860053.1| - 0.037 12.8 0.1 5.3 5.7 0.1 2.5 2 0 0 2 2 2 0 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|305663765|ref|YP_003860053.1| - 0.044 12.7 0.3 2.4 7.0 0.0 2.9 3 0 0 3 3 3 0 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|305663765|ref|YP_003860053.1| - 0.046 12.0 1.2 10 4.2 0.0 2.9 3 0 0 3 3 3 0 tRNA synthetases class I (I, L, M and V) RNA_POL_M_15KD PF02150.16 gi|305663767|ref|YP_003860055.1| - 1.8e-08 34.1 0.3 2.9e-08 33.4 0.3 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|305663767|ref|YP_003860055.1| - 0.00019 21.0 2.2 0.00075 19.1 2.2 1.9 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|305663767|ref|YP_003860055.1| - 0.00038 20.1 4.9 0.055 13.2 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|305663767|ref|YP_003860055.1| - 0.00093 18.7 0.2 0.0017 17.8 0.2 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|305663767|ref|YP_003860055.1| - 0.0015 18.5 0.4 0.0024 17.9 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|305663767|ref|YP_003860055.1| - 0.0086 16.0 2.5 0.02 14.8 2.2 1.8 1 1 1 2 2 2 1 Nudix N-terminal zf-TFIIB PF13453.6 gi|305663767|ref|YP_003860055.1| - 0.011 15.0 1.0 0.022 14.1 1.0 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|305663767|ref|YP_003860055.1| - 0.012 15.0 1.9 0.77 9.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.10 gi|305663767|ref|YP_003860055.1| - 0.02 15.0 0.2 0.033 14.3 0.2 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) IBR PF01485.21 gi|305663767|ref|YP_003860055.1| - 0.022 15.0 0.2 0.041 14.1 0.2 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain MqsA_antitoxin PF15731.5 gi|305663767|ref|YP_003860055.1| - 0.035 14.2 0.7 1.1 9.3 0.1 2.0 1 1 1 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Lar_restr_allev PF14354.6 gi|305663767|ref|YP_003860055.1| - 0.035 14.5 0.1 0.048 14.0 0.1 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF2318 PF10080.9 gi|305663767|ref|YP_003860055.1| - 0.041 14.0 0.3 0.051 13.7 0.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) C1_1 PF00130.22 gi|305663767|ref|YP_003860055.1| - 0.057 13.3 0.4 0.083 12.8 0.4 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) eIF-5_eIF-2B PF01873.17 gi|305663767|ref|YP_003860055.1| - 0.084 12.8 1.5 0.15 11.9 0.4 1.8 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zf-IS66 PF13005.7 gi|305663767|ref|YP_003860055.1| - 0.086 13.2 5.9 0.099 13.1 0.1 2.6 2 1 1 3 3 2 0 zinc-finger binding domain of transposase IS66 Elf1 PF05129.13 gi|305663767|ref|YP_003860055.1| - 0.11 12.6 0.1 0.11 12.6 0.1 1.7 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like TFIIS_C PF01096.18 gi|305663767|ref|YP_003860055.1| - 0.11 12.3 1.1 2.1 8.2 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.9 gi|305663767|ref|YP_003860055.1| - 0.17 12.0 3.3 6.5 6.9 1.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|305663767|ref|YP_003860055.1| - 0.91 9.5 3.4 2.9 7.9 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|305663767|ref|YP_003860055.1| - 2.1 8.6 5.3 28 5.0 0.2 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zn-ribbon_14 PF16503.5 gi|305663767|ref|YP_003860055.1| - 3.1 7.4 5.8 3.6 7.2 1.0 2.2 2 0 0 2 2 2 0 Zinc-ribbon SIS PF01380.22 gi|305663768|ref|YP_003860056.1| - 0.0073 16.2 0.2 0.015 15.2 0.2 1.5 1 0 0 1 1 1 1 SIS domain Flavoprotein PF02441.19 gi|305663769|ref|YP_003860057.1| - 1.9e-21 76.4 0.0 2.5e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein tRNA_int_endo PF01974.17 gi|305663771|ref|YP_003860059.1| - 1.4e-29 101.9 0.1 1.9e-29 101.5 0.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain Vip3A_N PF12495.8 gi|305663772|ref|YP_003860060.1| - 0.42 10.5 11.5 0.13 12.2 5.9 2.2 1 1 1 2 2 2 0 Vegetative insecticide protein 3A N terminal FANCI_S2 PF14676.6 gi|305663772|ref|YP_003860060.1| - 1.1 9.5 6.8 0.74 10.1 3.4 2.2 1 1 0 2 2 2 0 FANCI solenoid 2 LAGLIDADG_WhiA PF14527.6 gi|305663772|ref|YP_003860060.1| - 3.8 7.7 7.6 1.5 8.9 1.4 2.8 3 1 0 3 3 3 0 WhiA LAGLIDADG-like domain Rh5 PF18515.1 gi|305663773|ref|YP_003860061.1| - 0.02 14.2 2.1 0.033 13.5 2.1 1.4 1 1 0 1 1 1 0 Rh5 coiled-coil domain Molydop_binding PF01568.21 gi|305663774|ref|YP_003860062.1| - 0.00017 21.6 0.0 0.091 12.8 0.0 2.2 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain QueC PF06508.13 gi|305663774|ref|YP_003860062.1| - 0.067 12.7 0.0 0.096 12.2 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC HGTP_anticodon PF03129.20 gi|305663775|ref|YP_003860063.1| - 1e-17 64.1 0.2 2.9e-17 62.6 0.1 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|305663775|ref|YP_003860063.1| - 6.3e-05 23.0 0.5 0.00012 22.1 0.5 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Rad50_zn_hook PF04423.14 gi|305663775|ref|YP_003860063.1| - 0.034 14.0 0.1 0.087 12.7 0.1 1.7 1 0 0 1 1 1 0 Rad50 zinc hook motif Arginase PF00491.21 gi|305663776|ref|YP_003860064.1| - 1.9e-64 217.9 0.0 2.2e-64 217.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family TFIIB PF00382.19 gi|305663777|ref|YP_003860065.1| - 3.8e-35 119.7 4.6 1.6e-17 63.3 0.7 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|305663777|ref|YP_003860065.1| - 1e-07 31.3 0.1 1.9e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_AsnC-type PF13404.6 gi|305663777|ref|YP_003860065.1| - 1.3e-07 31.3 2.7 8.7e-05 22.3 0.2 3.4 3 1 0 3 3 3 2 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|305663777|ref|YP_003860065.1| - 8.3e-06 25.2 2.4 0.0074 15.8 0.1 4.1 4 0 0 4 4 4 1 Sigma-70, region 4 Cyclin_N PF00134.23 gi|305663777|ref|YP_003860065.1| - 2.3e-05 24.1 0.5 0.0032 17.2 0.2 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain Cyclin_C PF02984.19 gi|305663777|ref|YP_003860065.1| - 0.00021 21.3 0.0 0.68 10.0 0.0 2.2 2 0 0 2 2 2 2 Cyclin, C-terminal domain Exonuc_VII_S PF02609.16 gi|305663777|ref|YP_003860065.1| - 0.00029 20.8 0.2 0.031 14.3 0.1 2.6 2 0 0 2 2 2 1 Exonuclease VII small subunit HTH_24 PF13412.6 gi|305663777|ref|YP_003860065.1| - 0.0003 20.3 0.5 0.1 12.2 0.1 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|305663777|ref|YP_003860065.1| - 0.0005 19.8 0.8 0.38 10.6 0.1 4.1 3 0 0 3 3 3 1 Homeodomain-like domain HTH_11 PF08279.12 gi|305663777|ref|YP_003860065.1| - 0.00077 19.4 0.9 1.2 9.2 0.0 3.0 3 0 0 3 3 3 2 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|305663777|ref|YP_003860065.1| - 0.0025 17.2 3.2 0.047 13.1 0.2 3.7 4 0 0 4 4 4 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 gi|305663777|ref|YP_003860065.1| - 0.0057 16.3 5.6 0.27 11.0 0.0 3.6 4 0 0 4 4 4 2 Sigma-70, region 4 DUF4928 PF16280.5 gi|305663777|ref|YP_003860065.1| - 0.0061 15.9 0.5 0.086 12.1 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4928) RB_B PF01857.20 gi|305663777|ref|YP_003860065.1| - 0.0074 16.3 0.2 0.016 15.2 0.2 1.6 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain HTH_Crp_2 PF13545.6 gi|305663777|ref|YP_003860065.1| - 0.013 15.5 0.8 15 5.7 0.0 3.6 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain Ribonucleas_3_3 PF14622.6 gi|305663777|ref|YP_003860065.1| - 0.059 13.5 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease-III-like GerE PF00196.19 gi|305663777|ref|YP_003860065.1| - 0.073 12.6 1.7 16 5.2 0.2 3.1 4 0 0 4 4 4 0 Bacterial regulatory proteins, luxR family DUF2089 PF09862.9 gi|305663777|ref|YP_003860065.1| - 0.087 12.9 0.6 2.7 8.1 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2089) DUF746 PF05344.11 gi|305663777|ref|YP_003860065.1| - 0.12 12.2 1.4 1.4 8.8 0.2 3.1 3 1 0 3 3 3 0 Domain of Unknown Function (DUF746) HU-CCDC81_euk_2 PF18289.1 gi|305663777|ref|YP_003860065.1| - 0.39 10.9 1.4 37 4.6 0.0 3.3 4 0 0 4 4 4 0 CCDC81 eukaryotic HU domain 2 DNA_RNApol_7kD PF03604.13 gi|305663778|ref|YP_003860066.1| - 1.2e-07 31.2 3.1 2.3e-07 30.3 3.1 1.5 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|305663778|ref|YP_003860066.1| - 2.2e-05 24.5 0.5 3e-05 24.0 0.5 1.2 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|305663778|ref|YP_003860066.1| - 0.00022 21.2 0.2 0.00024 21.1 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|305663778|ref|YP_003860066.1| - 0.0003 20.7 0.2 0.00037 20.5 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|305663778|ref|YP_003860066.1| - 0.00045 19.5 0.4 0.028 13.8 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|305663778|ref|YP_003860066.1| - 0.0017 17.9 1.0 0.029 13.9 0.1 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-C2H2 PF00096.26 gi|305663778|ref|YP_003860066.1| - 0.0021 18.4 1.2 1.2 9.8 0.1 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.6 gi|305663778|ref|YP_003860066.1| - 0.0027 17.4 2.2 0.37 10.6 0.3 2.1 2 0 0 2 2 2 2 zinc-ribbon domain XPA_N PF01286.18 gi|305663778|ref|YP_003860066.1| - 0.0043 17.1 0.2 0.0043 17.1 0.2 1.5 2 0 0 2 2 2 1 XPA protein N-terminal zf-C2H2_4 PF13894.6 gi|305663778|ref|YP_003860066.1| - 0.0096 16.7 1.5 1.9 9.5 0.1 2.2 2 0 0 2 2 2 1 C2H2-type zinc finger zf-C2HC5 PF06221.13 gi|305663778|ref|YP_003860066.1| - 0.011 15.7 0.6 0.018 15.0 0.6 1.4 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-C2HC_2 PF13913.6 gi|305663778|ref|YP_003860066.1| - 0.012 15.5 2.6 1.5 8.8 0.4 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type UPF0547 PF10571.9 gi|305663778|ref|YP_003860066.1| - 0.017 15.2 0.9 0.13 12.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 YhfH PF14149.6 gi|305663778|ref|YP_003860066.1| - 0.017 15.1 0.4 0.33 11.0 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein DUF2072 PF09845.9 gi|305663778|ref|YP_003860066.1| - 0.028 14.7 0.2 0.032 14.5 0.2 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein Zn_ribbon_SprT PF17283.2 gi|305663778|ref|YP_003860066.1| - 0.035 14.0 2.5 0.15 12.0 2.4 1.9 1 1 0 1 1 1 0 SprT-like zinc ribbon domain TFIIS_C PF01096.18 gi|305663778|ref|YP_003860066.1| - 0.043 13.7 2.8 1.2 9.0 0.1 2.4 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.6 gi|305663778|ref|YP_003860066.1| - 0.058 14.1 2.7 0.13 12.9 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_CPCC PF14206.6 gi|305663778|ref|YP_003860066.1| - 0.07 13.0 0.2 0.36 10.7 0.0 1.8 2 0 0 2 2 2 0 Cysteine-rich CPCC zf-BED PF02892.15 gi|305663778|ref|YP_003860066.1| - 0.072 13.1 2.2 1.3 9.2 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger RNHCP PF12647.7 gi|305663778|ref|YP_003860066.1| - 0.077 13.0 0.1 0.081 12.9 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain Zn_Tnp_IS1595 PF12760.7 gi|305663778|ref|YP_003860066.1| - 0.093 12.7 3.2 0.31 11.0 0.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain CpXC PF14353.6 gi|305663778|ref|YP_003860066.1| - 0.11 12.6 1.0 1.2 9.2 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-H2C2_2 PF13465.6 gi|305663778|ref|YP_003860066.1| - 0.12 12.8 1.2 4.5 7.9 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-Di19 PF05605.12 gi|305663778|ref|YP_003860066.1| - 0.15 12.4 2.1 1.4 9.3 0.3 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_13 PF09855.9 gi|305663778|ref|YP_003860066.1| - 0.24 11.6 2.4 1.1 9.5 0.1 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_10 PF10058.9 gi|305663778|ref|YP_003860066.1| - 0.57 9.9 4.2 11 5.8 4.2 2.1 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|305663778|ref|YP_003860066.1| - 0.71 9.4 4.8 12 5.6 4.8 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding SUI1 PF01253.22 gi|305663779|ref|YP_003860067.1| - 2.1e-22 79.5 1.9 2.5e-22 79.2 1.9 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|305663779|ref|YP_003860067.1| - 0.0068 16.7 0.5 0.0089 16.3 0.5 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) eIF-5_eIF-2B PF01873.17 gi|305663779|ref|YP_003860067.1| - 0.042 13.7 0.1 0.057 13.3 0.1 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 PALP PF00291.25 gi|305663780|ref|YP_003860068.1| - 4.3e-88 295.5 0.0 5.1e-88 295.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|305663780|ref|YP_003860068.1| - 2.3e-07 30.5 0.0 6.8e-07 29.0 0.0 1.8 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|305663780|ref|YP_003860068.1| - 0.0024 17.8 0.0 0.0056 16.6 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|305663780|ref|YP_003860068.1| - 0.007 16.9 0.0 0.032 14.8 0.0 2.1 2 0 0 2 2 2 1 ACT domain RimK PF08443.11 gi|305663781|ref|YP_003860069.1| - 3e-37 128.0 0.0 4e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|305663781|ref|YP_003860069.1| - 3e-12 46.3 0.0 4.5e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|305663781|ref|YP_003860069.1| - 3.2e-09 37.0 0.0 4.8e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|305663781|ref|YP_003860069.1| - 1e-06 28.3 0.0 0.0035 16.6 0.0 2.5 2 1 1 3 3 3 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|305663781|ref|YP_003860069.1| - 1.7e-06 27.5 0.0 0.0022 17.3 0.0 2.3 2 0 0 2 2 2 2 YheC/D like ATP-grasp Rimk_N PF18030.1 gi|305663781|ref|YP_003860069.1| - 0.00027 21.3 0.0 0.00058 20.2 0.0 1.5 1 0 0 1 1 1 1 RimK PreATP-grasp domain Ins134_P3_kin PF05770.11 gi|305663781|ref|YP_003860069.1| - 0.0087 15.6 0.0 0.79 9.2 0.0 2.2 1 1 1 2 2 2 2 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain DUF1614 PF07758.11 gi|305663782|ref|YP_003860070.1| - 0.0015 18.6 3.4 0.0026 17.8 3.4 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1614) DUF3289 PF11692.8 gi|305663784|ref|YP_003860072.1| - 0.0091 15.6 0.9 0.016 14.8 0.5 1.5 1 1 1 2 2 2 1 Protein of unknown function (DUF3289) Baculo_p24 PF05073.12 gi|305663784|ref|YP_003860072.1| - 0.087 12.6 0.1 0.33 10.7 0.0 1.8 2 0 0 2 2 2 0 Baculovirus P24 capsid protein Metallophos PF00149.28 gi|305663785|ref|YP_003860073.1| - 1.1e-12 48.9 0.0 1.3e-12 48.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|305663785|ref|YP_003860073.1| - 1.3e-06 28.7 0.0 4.6e-06 26.9 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Prok-RING_1 PF14446.6 gi|305663786|ref|YP_003860074.1| - 5.8e-05 22.9 4.1 0.00036 20.4 1.5 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.12 gi|305663786|ref|YP_003860074.1| - 0.0012 18.7 5.7 0.0043 17.0 5.7 1.8 1 1 0 1 1 1 1 zinc-ribbons zf-H2C2_2 PF13465.6 gi|305663786|ref|YP_003860074.1| - 0.0077 16.6 4.5 0.73 10.4 0.1 3.3 3 0 0 3 3 3 1 Zinc-finger double domain C1_2 PF03107.16 gi|305663786|ref|YP_003860074.1| - 0.018 15.4 2.8 0.018 15.4 2.8 2.2 1 1 1 2 2 2 0 C1 domain zf-RING_2 PF13639.6 gi|305663786|ref|YP_003860074.1| - 0.019 15.3 6.5 0.028 14.7 6.5 1.3 1 0 0 1 1 1 0 Ring finger domain Zn_ribbon_SprT PF17283.2 gi|305663786|ref|YP_003860074.1| - 0.026 14.4 12.0 0.069 13.1 7.0 2.7 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf-Di19 PF05605.12 gi|305663786|ref|YP_003860074.1| - 0.026 14.8 8.7 1.4 9.2 0.3 3.1 1 1 2 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding HypA PF01155.19 gi|305663786|ref|YP_003860074.1| - 0.033 14.2 4.8 1.4 9.0 4.8 2.1 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 gi|305663786|ref|YP_003860074.1| - 0.04 13.9 6.2 1.1 9.3 0.1 2.5 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zf-RING_4 PF14570.6 gi|305663786|ref|YP_003860074.1| - 0.054 13.3 8.9 0.12 12.2 8.9 1.7 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-C3HC4_3 PF13920.6 gi|305663786|ref|YP_003860074.1| - 0.059 13.2 10.4 2.6 8.0 10.4 2.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.7 gi|305663786|ref|YP_003860074.1| - 0.06 13.3 6.5 6.8 6.8 7.6 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|305663786|ref|YP_003860074.1| - 0.079 13.0 6.5 1.3 9.1 7.2 2.2 1 1 1 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|305663786|ref|YP_003860074.1| - 0.3 11.3 9.4 0.69 10.1 4.4 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DUF1272 PF06906.11 gi|305663786|ref|YP_003860074.1| - 0.3 11.2 6.0 3.5 7.8 6.0 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-TFIIB PF13453.6 gi|305663786|ref|YP_003860074.1| - 0.77 9.1 4.7 5.3 6.4 1.3 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-B_box PF00643.24 gi|305663786|ref|YP_003860074.1| - 1 9.6 8.6 2.5 8.3 4.7 2.7 2 1 0 2 2 2 0 B-box zinc finger zf-BED PF02892.15 gi|305663786|ref|YP_003860074.1| - 1 9.4 9.9 3.2 7.9 0.4 2.5 1 1 0 2 2 2 0 BED zinc finger FANCL_C PF11793.8 gi|305663786|ref|YP_003860074.1| - 1.2 9.4 9.3 1.5e+02 2.7 9.3 2.3 1 1 0 1 1 1 0 FANCL C-terminal domain ADK_lid PF05191.14 gi|305663786|ref|YP_003860074.1| - 1.7 8.7 6.2 0.66 10.0 2.5 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid Rep_fac-A_C PF08646.10 gi|305663786|ref|YP_003860074.1| - 1.8 8.3 7.1 0.39 10.5 4.0 1.5 1 1 1 2 2 2 0 Replication factor-A C terminal domain TF_Zn_Ribbon PF08271.12 gi|305663786|ref|YP_003860074.1| - 2.2 7.8 8.0 2.1 8.0 0.3 2.6 2 1 1 3 3 3 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|305663786|ref|YP_003860074.1| - 2.4 8.1 11.0 8 6.5 7.1 2.9 2 1 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|305663786|ref|YP_003860074.1| - 2.7 8.3 12.2 2.5 8.4 0.5 3.4 2 1 2 4 4 4 0 LITAF-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|305663786|ref|YP_003860074.1| - 5.9 6.4 8.8 10 5.7 0.5 3.0 3 0 0 3 3 3 0 zinc-ribbon domain PyrI_C PF02748.15 gi|305663786|ref|YP_003860074.1| - 7.5 6.5 10.2 0.95 9.4 3.1 2.4 1 1 2 3 3 3 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain HAD PF12710.7 gi|305663789|ref|YP_003860077.1| - 3.5e-12 47.1 0.0 4.4e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|305663789|ref|YP_003860077.1| - 3e-10 40.3 0.0 2.5e-07 30.7 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|305663789|ref|YP_003860077.1| - 2.2e-07 31.4 0.0 0.0012 19.2 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|305663789|ref|YP_003860077.1| - 0.00024 20.6 0.0 0.11 11.9 0.0 2.1 2 0 0 2 2 2 2 Putative Phosphatase HAD_2 PF13419.6 gi|305663789|ref|YP_003860077.1| - 0.0012 19.0 0.1 0.11 12.6 0.0 2.3 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|305663789|ref|YP_003860077.1| - 0.11 12.0 0.0 0.39 10.2 0.0 1.8 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.16 gi|305663789|ref|YP_003860077.1| - 0.11 11.6 0.0 9.1 5.3 0.0 2.2 2 0 0 2 2 2 0 Trehalose-phosphatase Spermine_synth PF01564.17 gi|305663791|ref|YP_003860079.1| - 3.1e-49 167.0 0.4 4e-49 166.6 0.4 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_31 PF13847.6 gi|305663791|ref|YP_003860079.1| - 1.2e-06 28.4 0.1 2.2e-06 27.5 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Spermine_synt_N PF17284.2 gi|305663791|ref|YP_003860079.1| - 1.3e-06 28.2 0.3 3e-06 27.0 0.3 1.6 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_12 PF08242.12 gi|305663791|ref|YP_003860079.1| - 5.5e-05 23.8 0.0 0.00012 22.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|305663791|ref|YP_003860079.1| - 7.1e-05 23.4 0.0 0.00014 22.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|305663791|ref|YP_003860079.1| - 0.0004 20.3 0.0 0.00071 19.5 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase TrkA_N PF02254.18 gi|305663791|ref|YP_003860079.1| - 0.0099 16.1 0.3 0.83 9.9 0.1 2.4 1 1 1 2 2 2 1 TrkA-N domain MTS PF05175.14 gi|305663791|ref|YP_003860079.1| - 0.029 13.9 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|305663791|ref|YP_003860079.1| - 0.031 15.3 0.0 0.06 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|305663791|ref|YP_003860079.1| - 0.11 11.7 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_5 PF01795.19 gi|305663791|ref|YP_003860079.1| - 0.16 11.5 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family OMPdecase PF00215.24 gi|305663793|ref|YP_003860081.1| - 1.5e-21 77.0 0.0 1.8e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pribosyltran PF00156.27 gi|305663794|ref|YP_003860082.1| - 6.3e-15 55.1 0.0 9.1e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Phage_XkdX PF09693.10 gi|305663794|ref|YP_003860082.1| - 0.047 13.7 1.0 5.7 7.0 0.2 2.8 3 0 0 3 3 3 0 Phage uncharacterised protein (Phage_XkdX) UPRTase PF14681.6 gi|305663794|ref|YP_003860082.1| - 0.088 12.2 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase OTCace_N PF02729.21 gi|305663795|ref|YP_003860083.1| - 5.5e-40 136.8 0.0 7.3e-40 136.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|305663795|ref|YP_003860083.1| - 7.5e-24 84.6 0.0 1.4e-23 83.7 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|305663796|ref|YP_003860084.1| - 4.6e-33 113.3 4.6 6.3e-33 112.9 4.6 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|305663796|ref|YP_003860084.1| - 3e-18 65.5 0.6 5.3e-18 64.7 0.6 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-ribbon_3 PF13248.6 gi|305663796|ref|YP_003860084.1| - 0.037 13.5 0.0 0.067 12.6 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DHODB_Fe-S_bind PF10418.9 gi|305663797|ref|YP_003860085.1| - 9e-11 41.4 3.2 1.6e-10 40.6 3.2 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|305663797|ref|YP_003860085.1| - 1.6e-06 28.7 0.0 2.5e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.12 gi|305663797|ref|YP_003860085.1| - 0.0064 16.6 0.1 0.0098 16.0 0.1 1.3 1 0 0 1 1 1 1 Ferric reductase NAD binding domain Amidohydro_1 PF01979.20 gi|305663798|ref|YP_003860086.1| - 5.3e-19 68.7 0.0 3.7e-18 66.0 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|305663798|ref|YP_003860086.1| - 1.8e-08 34.3 0.1 0.00054 19.5 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Kazal_3 PF18434.1 gi|305663798|ref|YP_003860086.1| - 0.053 13.3 0.0 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 Kazal-type serine protease inhibitor domain DHO_dh PF01180.21 gi|305663799|ref|YP_003860087.1| - 1.5e-55 188.5 0.4 1.8e-55 188.3 0.4 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|305663799|ref|YP_003860087.1| - 6.2e-10 38.7 0.0 7.8e-08 31.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|305663799|ref|YP_003860087.1| - 6.3e-05 22.5 0.8 0.00054 19.5 0.1 2.6 2 1 1 3 3 3 1 Histidine biosynthesis protein NMO PF03060.15 gi|305663799|ref|YP_003860087.1| - 7e-05 22.4 0.2 0.3 10.4 0.0 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase NanE PF04131.14 gi|305663799|ref|YP_003860087.1| - 0.00058 19.1 0.5 0.005 16.0 0.1 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.12 gi|305663799|ref|YP_003860087.1| - 0.012 14.8 3.9 0.85 8.7 1.3 2.6 2 1 0 3 3 3 0 Protein of unknown function (DUF561) IMPDH PF00478.25 gi|305663799|ref|YP_003860087.1| - 0.059 12.4 1.9 2.4 7.1 0.1 3.0 2 1 1 3 3 3 0 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|305663799|ref|YP_003860087.1| - 0.15 11.4 0.5 19 4.6 0.1 2.5 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator Radical_SAM PF04055.21 gi|305663800|ref|YP_003860088.1| - 2.4e-17 63.8 0.1 1.5e-16 61.2 0.1 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|305663800|ref|YP_003860088.1| - 5.6e-10 39.6 0.1 1.2e-09 38.5 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|305663800|ref|YP_003860088.1| - 4.7e-07 30.0 0.1 1.2e-06 28.6 0.1 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-AD PF07776.15 gi|305663800|ref|YP_003860088.1| - 0.65 10.3 3.8 1.6 9.0 3.8 1.7 1 0 0 1 1 1 0 Zinc-finger associated domain (zf-AD) Rpr2 PF04032.16 gi|305663801|ref|YP_003860089.1| - 6.6e-17 61.6 0.0 7.8e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Nudix_N_2 PF14803.6 gi|305663801|ref|YP_003860089.1| - 0.019 14.8 2.2 3.1 7.8 0.3 2.4 2 0 0 2 2 2 0 Nudix N-terminal DUF2180 PF09947.9 gi|305663801|ref|YP_003860089.1| - 0.059 13.3 0.7 9.7 6.2 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) CRS1_YhbY PF01985.21 gi|305663802|ref|YP_003860090.1| - 8.8e-09 35.4 0.8 1.2e-08 35.0 0.8 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_S19e PF01090.19 gi|305663803|ref|YP_003860091.1| - 1.7e-51 173.5 0.0 2e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|305663803|ref|YP_003860091.1| - 0.11 12.4 0.0 0.41 10.6 0.0 1.9 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain dsDNA_bind PF01984.20 gi|305663804|ref|YP_003860092.1| - 8.2e-24 84.0 9.2 9.7e-24 83.8 9.2 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|305663804|ref|YP_003860092.1| - 0.2 10.9 8.1 0.23 10.7 8.1 1.0 1 0 0 1 1 1 0 Radial spoke protein 3 Ribosomal_L39 PF00832.20 gi|305663805|ref|YP_003860093.1| - 1.6e-16 59.6 8.8 2e-16 59.3 8.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|305663806|ref|YP_003860094.1| - 6.4e-06 26.3 0.0 7.9e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e DUF2487 PF10673.9 gi|305663806|ref|YP_003860094.1| - 0.022 14.8 0.0 0.025 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2487) MEDS PF14417.6 gi|305663806|ref|YP_003860094.1| - 0.15 11.9 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain eIF-6 PF01912.18 gi|305663807|ref|YP_003860095.1| - 6.1e-66 221.6 1.9 1.2e-65 220.6 2.1 1.4 1 1 1 2 2 2 2 eIF-6 family Ribosomal_L18A PF01775.17 gi|305663808|ref|YP_003860096.1| - 3.3e-11 43.3 0.1 5e-11 42.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|305663809|ref|YP_003860097.1| - 5.3e-10 39.3 3.2 5.3e-10 39.3 3.2 1.7 1 1 1 2 2 2 1 Prefoldin subunit PI_PP_I PF18363.1 gi|305663809|ref|YP_003860097.1| - 0.0023 18.1 3.2 0.19 11.9 0.4 2.2 1 1 1 2 2 2 2 Phosphoinositide phosphatase insertion domain DASH_Duo1 PF08651.10 gi|305663809|ref|YP_003860097.1| - 0.009 15.8 0.7 0.009 15.8 0.7 2.2 2 1 0 2 2 2 1 DASH complex subunit Duo1 Spc42p PF11544.8 gi|305663809|ref|YP_003860097.1| - 0.009 16.0 4.4 0.009 16.0 4.4 1.6 2 0 0 2 2 2 1 Spindle pole body component Spc42p Prefoldin_2 PF01920.20 gi|305663809|ref|YP_003860097.1| - 0.037 14.0 10.3 0.49 10.4 3.3 2.3 1 1 1 2 2 2 0 Prefoldin subunit Mating_N PF12731.7 gi|305663809|ref|YP_003860097.1| - 0.093 12.8 1.3 0.85 9.8 0.1 2.3 2 1 0 2 2 2 0 Mating-type protein beta 1 DUF5344 PF17279.2 gi|305663809|ref|YP_003860097.1| - 0.3 11.7 8.4 0.13 12.9 1.8 2.8 2 1 0 2 2 2 0 Family of unknown function (DUF5344) DUF3810 PF12725.7 gi|305663809|ref|YP_003860097.1| - 0.45 9.8 4.7 0.43 9.9 0.1 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3810) APG17 PF04108.12 gi|305663809|ref|YP_003860097.1| - 0.55 9.3 9.9 0.39 9.8 1.8 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 DcrB PF08786.11 gi|305663809|ref|YP_003860097.1| - 0.62 10.2 3.6 1.1 9.3 0.2 2.1 2 0 0 2 2 2 0 DcrB DNA_primase_lrg PF04104.14 gi|305663809|ref|YP_003860097.1| - 0.79 9.1 3.6 0.45 9.9 1.4 1.6 1 1 1 2 2 2 0 Eukaryotic and archaeal DNA primase, large subunit YabA PF06156.13 gi|305663809|ref|YP_003860097.1| - 2.2 9.0 6.1 13 6.5 1.2 2.2 2 0 0 2 2 2 0 Initiation control protein YabA Streptin-Immun PF11083.8 gi|305663809|ref|YP_003860097.1| - 3.5 8.1 9.5 0.4 11.1 2.9 2.4 1 1 1 3 3 3 0 Lantibiotic streptin immunity protein FapA PF03961.13 gi|305663809|ref|YP_003860097.1| - 9.2 4.7 9.6 8.2 4.9 3.8 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A SRP54 PF00448.22 gi|305663810|ref|YP_003860098.1| - 2.3e-70 236.2 2.0 3.6e-70 235.6 2.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|305663810|ref|YP_003860098.1| - 2.6e-09 37.1 0.5 9e-09 35.4 0.5 2.0 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain MeaB PF03308.16 gi|305663810|ref|YP_003860098.1| - 2.9e-05 23.2 0.9 0.00065 18.8 1.2 2.5 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|305663810|ref|YP_003860098.1| - 3.4e-05 23.6 0.5 6.1e-05 22.8 0.5 1.4 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|305663810|ref|YP_003860098.1| - 0.00013 21.6 0.9 0.00026 20.6 0.9 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|305663810|ref|YP_003860098.1| - 0.00026 21.1 0.2 0.0013 18.8 0.0 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|305663810|ref|YP_003860098.1| - 0.00054 19.9 2.8 0.005 16.8 0.1 2.8 3 1 0 3 3 3 1 AAA domain NTPase_1 PF03266.15 gi|305663810|ref|YP_003860098.1| - 0.0015 18.4 4.1 0.021 14.8 0.5 2.4 1 1 1 2 2 2 1 NTPase TPP_enzyme_M PF00205.22 gi|305663810|ref|YP_003860098.1| - 0.0021 17.8 0.0 0.0058 16.4 0.0 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Zeta_toxin PF06414.12 gi|305663810|ref|YP_003860098.1| - 0.0043 16.4 0.0 0.0091 15.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_7 PF12775.7 gi|305663810|ref|YP_003860098.1| - 0.0061 16.1 0.3 0.29 10.6 0.2 2.3 1 1 1 2 2 2 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|305663810|ref|YP_003860098.1| - 0.0071 16.7 0.1 0.011 16.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|305663810|ref|YP_003860098.1| - 0.0073 16.3 0.4 0.084 12.9 0.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|305663810|ref|YP_003860098.1| - 0.0098 16.3 1.6 0.04 14.3 1.6 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|305663810|ref|YP_003860098.1| - 0.01 15.6 0.8 0.01 15.6 0.8 2.8 2 2 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|305663810|ref|YP_003860098.1| - 0.011 15.8 0.3 0.045 13.8 0.3 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase ArsA_ATPase PF02374.15 gi|305663810|ref|YP_003860098.1| - 0.012 14.8 3.8 0.077 12.2 0.5 2.6 3 0 0 3 3 3 0 Anion-transporting ATPase AAA_33 PF13671.6 gi|305663810|ref|YP_003860098.1| - 0.013 15.6 0.0 0.028 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|305663810|ref|YP_003860098.1| - 0.032 13.9 0.2 0.22 11.2 0.0 2.3 3 0 0 3 3 3 0 Thymidylate kinase APS_kinase PF01583.20 gi|305663810|ref|YP_003860098.1| - 0.052 13.4 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_22 PF13401.6 gi|305663810|ref|YP_003860098.1| - 0.062 13.6 0.1 0.27 11.5 0.1 2.1 1 1 1 2 2 2 0 AAA domain Arf PF00025.21 gi|305663810|ref|YP_003860098.1| - 0.067 12.6 0.2 0.17 11.3 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosylation factor family LpxK PF02606.14 gi|305663810|ref|YP_003860098.1| - 0.074 12.1 0.1 0.12 11.5 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_17 PF13207.6 gi|305663810|ref|YP_003860098.1| - 0.085 13.3 0.4 0.24 11.9 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|305663810|ref|YP_003860098.1| - 0.094 13.0 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain SecE PF00584.20 gi|305663811|ref|YP_003860099.1| - 0.0033 17.3 0.0 0.0041 17.0 0.0 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex NDUF_B12 PF08122.12 gi|305663811|ref|YP_003860099.1| - 0.14 12.3 0.1 0.18 11.9 0.1 1.2 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B12 subunit family Spt5-NGN PF03439.13 gi|305663812|ref|YP_003860100.1| - 1.3e-19 69.9 0.0 2.2e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|305663812|ref|YP_003860100.1| - 4.6e-06 26.4 0.1 7.6e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 KOW motif DUF4978 PF16349.5 gi|305663812|ref|YP_003860100.1| - 0.018 14.7 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4978) Ribosomal_L11_N PF03946.14 gi|305663813|ref|YP_003860101.1| - 1.2e-20 73.1 1.2 2.2e-20 72.2 1.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|305663813|ref|YP_003860101.1| - 5.7e-17 62.0 0.6 1.2e-16 61.0 0.6 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|305663814|ref|YP_003860102.1| - 3.6e-32 111.8 0.1 4.3e-32 111.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family RL10P_insert PF17777.1 gi|305663815|ref|YP_003860103.1| - 8.7e-17 60.9 0.0 3e-16 59.2 0.0 2.0 2 0 0 2 2 2 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|305663815|ref|YP_003860103.1| - 1.4e-16 60.4 0.6 2.9e-16 59.5 0.6 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.19 gi|305663815|ref|YP_003860103.1| - 0.0012 19.4 4.1 0.0031 18.1 4.1 1.8 1 0 0 1 1 1 1 60s Acidic ribosomal protein U1snRNP70_N PF12220.8 gi|305663815|ref|YP_003860103.1| - 3.1 8.5 5.9 1.1 10.0 0.7 2.2 2 0 0 2 2 2 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal SIS PF01380.22 gi|305663816|ref|YP_003860104.1| - 1.1e-20 73.8 0.1 1.9e-20 73.0 0.1 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|305663816|ref|YP_003860104.1| - 9.5e-14 51.6 1.5 4.6e-09 36.4 1.0 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|305663816|ref|YP_003860104.1| - 3.3e-05 23.8 1.1 0.22 11.4 0.0 2.6 2 1 1 3 3 3 2 PRMT5 arginine-N-methyltransferase ApbA PF02558.16 gi|305663816|ref|YP_003860104.1| - 0.048 13.3 0.2 0.13 12.0 0.2 1.7 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA Glu_dehyd_C PF16912.5 gi|305663816|ref|YP_003860104.1| - 0.08 12.4 0.1 0.12 11.8 0.1 1.4 1 1 0 1 1 1 0 Glucose dehydrogenase C-terminus 2-Hacid_dh_C PF02826.19 gi|305663816|ref|YP_003860104.1| - 0.13 11.6 1.9 0.89 8.9 0.1 2.2 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|305663816|ref|YP_003860104.1| - 0.14 10.8 0.1 0.22 10.2 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein PIN PF01850.21 gi|305663817|ref|YP_003860105.1| - 7e-13 49.2 1.4 8.3e-13 48.9 1.4 1.1 1 0 0 1 1 1 1 PIN domain RHH_1 PF01402.21 gi|305663818|ref|YP_003860106.1| - 0.00049 19.9 4.1 0.0055 16.6 0.9 3.1 2 2 0 2 2 2 1 Ribbon-helix-helix protein, copG family UTP15_C PF09384.10 gi|305663818|ref|YP_003860106.1| - 0.0019 17.9 0.1 0.002 17.8 0.1 1.1 1 0 0 1 1 1 1 UTP15 C terminal PSK_trans_fac PF07704.11 gi|305663818|ref|YP_003860106.1| - 0.017 15.9 0.6 0.019 15.7 0.6 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor DUF3333 PF11812.8 gi|305663818|ref|YP_003860106.1| - 0.053 13.7 0.0 0.059 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) VAPB_antitox PF02697.14 gi|305663818|ref|YP_003860106.1| - 0.057 14.2 1.8 0.077 13.8 1.8 1.3 1 0 0 1 1 1 0 Putative antitoxin Pterin_4a PF01329.19 gi|305663818|ref|YP_003860106.1| - 0.059 13.5 0.4 0.075 13.2 0.4 1.1 1 0 0 1 1 1 0 Pterin 4 alpha carbinolamine dehydratase GKAP PF03359.13 gi|305663819|ref|YP_003860107.1| - 0.00071 19.3 0.1 0.00084 19.0 0.1 1.1 1 0 0 1 1 1 1 Guanylate-kinase-associated protein (GKAP) protein CorA PF01544.18 gi|305663819|ref|YP_003860107.1| - 0.11 11.8 0.9 0.28 10.5 0.3 1.7 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein HEPN PF05168.14 gi|305663820|ref|YP_003860108.1| - 1.5e-05 25.1 0.0 1.8e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 HEPN domain ATPase_2 PF01637.18 gi|305663822|ref|YP_003860110.1| - 1.1e-51 176.1 0.0 1.4e-51 175.6 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|305663822|ref|YP_003860110.1| - 8.3e-06 26.3 0.0 1.6e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|305663822|ref|YP_003860110.1| - 0.0025 17.6 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|305663822|ref|YP_003860110.1| - 0.016 15.6 0.0 0.038 14.4 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|305663822|ref|YP_003860110.1| - 0.017 14.9 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|305663822|ref|YP_003860110.1| - 0.023 13.9 0.0 0.088 12.0 0.0 1.9 1 1 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|305663822|ref|YP_003860110.1| - 0.026 14.4 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 gi|305663822|ref|YP_003860110.1| - 0.037 14.5 0.0 0.072 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|305663822|ref|YP_003860110.1| - 0.038 14.0 0.0 0.1 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|305663822|ref|YP_003860110.1| - 0.043 14.1 0.0 0.1 12.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|305663822|ref|YP_003860110.1| - 0.057 13.3 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 Bacterial dnaA protein RNA_helicase PF00910.22 gi|305663822|ref|YP_003860110.1| - 0.068 13.6 0.0 0.27 11.6 0.0 1.9 2 0 0 2 2 2 0 RNA helicase PhoH PF02562.16 gi|305663822|ref|YP_003860110.1| - 0.078 12.4 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Mg_chelatase PF01078.21 gi|305663822|ref|YP_003860110.1| - 0.12 11.7 0.0 3.6 6.9 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DAP3 PF10236.9 gi|305663822|ref|YP_003860110.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 PBECR2 PF18810.1 gi|305663822|ref|YP_003860110.1| - 0.13 12.5 0.5 0.42 10.9 0.5 1.8 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 ATPase_2 PF01637.18 gi|305663823|ref|YP_003860111.1| - 2.2e-55 188.1 0.2 3.6e-55 187.4 0.2 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|305663823|ref|YP_003860111.1| - 4e-06 26.2 0.0 9.5e-06 25.0 0.0 1.6 1 1 1 2 2 2 1 NB-ARC domain AAA_16 PF13191.6 gi|305663823|ref|YP_003860111.1| - 1.8e-05 25.2 0.0 0.00011 22.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|305663823|ref|YP_003860111.1| - 3.8e-05 23.7 0.0 0.00065 19.7 0.0 2.2 1 1 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|305663823|ref|YP_003860111.1| - 0.00059 20.3 0.1 0.0017 18.8 0.0 1.8 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|305663823|ref|YP_003860111.1| - 0.00076 19.5 0.0 0.003 17.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|305663823|ref|YP_003860111.1| - 0.00087 19.6 0.1 0.0029 17.9 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_30 PF13604.6 gi|305663823|ref|YP_003860111.1| - 0.0011 18.7 0.0 0.0022 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.18 gi|305663823|ref|YP_003860111.1| - 0.0049 16.7 0.0 0.011 15.6 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_PrkA PF08298.11 gi|305663823|ref|YP_003860111.1| - 0.0075 15.2 0.0 0.018 14.0 0.0 1.6 2 0 0 2 2 2 1 PrkA AAA domain AAA_23 PF13476.6 gi|305663823|ref|YP_003860111.1| - 0.012 16.2 0.0 0.035 14.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|305663823|ref|YP_003860111.1| - 0.017 15.1 0.0 0.042 13.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|305663823|ref|YP_003860111.1| - 0.023 15.1 0.0 0.059 13.8 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 gi|305663823|ref|YP_003860111.1| - 0.031 14.5 0.3 0.19 12.0 0.0 2.5 3 1 0 3 3 2 0 AAA domain PBECR2 PF18810.1 gi|305663823|ref|YP_003860111.1| - 0.036 14.4 0.5 0.39 11.0 0.3 2.5 2 0 0 2 2 2 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 ATP-synt_ab PF00006.25 gi|305663823|ref|YP_003860111.1| - 0.037 13.7 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_21 PF13304.6 gi|305663823|ref|YP_003860111.1| - 0.065 13.0 0.0 0.22 11.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|305663823|ref|YP_003860111.1| - 0.065 13.7 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 gi|305663823|ref|YP_003860111.1| - 0.15 11.8 0.1 0.25 11.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|305663823|ref|YP_003860111.1| - 0.15 11.7 0.0 0.46 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|305663823|ref|YP_003860111.1| - 0.16 12.5 0.1 0.58 10.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|305663823|ref|YP_003860111.1| - 0.16 11.2 0.0 0.18 11.0 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain SMC_N PF02463.19 gi|305663823|ref|YP_003860111.1| - 0.18 11.3 0.0 0.87 9.0 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain G-alpha PF00503.20 gi|305663823|ref|YP_003860111.1| - 0.18 10.9 0.0 0.28 10.3 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit DAP3 PF10236.9 gi|305663823|ref|YP_003860111.1| - 0.19 10.9 0.0 0.67 9.1 0.0 1.8 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_19 PF13245.6 gi|305663823|ref|YP_003860111.1| - 0.22 11.8 0.0 0.54 10.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|305663823|ref|YP_003860111.1| - 0.23 11.1 0.0 2.2 7.9 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 gi|305663823|ref|YP_003860111.1| - 0.23 10.8 0.0 0.38 10.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sec66 PF09802.9 gi|305663824|ref|YP_003860112.1| - 0.088 12.4 0.0 0.096 12.3 0.0 1.1 1 0 0 1 1 1 0 Preprotein translocase subunit Sec66 ABC_tran_CTD PF16326.5 gi|305663825|ref|YP_003860113.1| - 0.0017 18.6 10.9 0.029 14.6 0.5 2.6 2 1 1 3 3 2 2 ABC transporter C-terminal domain Atg14 PF10186.9 gi|305663825|ref|YP_003860113.1| - 0.002 17.3 0.9 0.0024 17.0 0.9 1.0 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 CTK3_C PF12350.8 gi|305663825|ref|YP_003860113.1| - 0.0044 17.2 3.5 0.058 13.6 1.8 2.6 1 1 1 2 2 2 2 CTD kinase subunit gamma CTK3 C-terminus TMPIT PF07851.13 gi|305663825|ref|YP_003860113.1| - 0.0049 16.2 0.0 0.0056 16.0 0.0 1.1 1 0 0 1 1 1 1 TMPIT-like protein COG2 PF06148.11 gi|305663825|ref|YP_003860113.1| - 0.0052 16.9 0.2 0.21 11.6 0.0 2.1 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 DUF4795 PF16043.5 gi|305663825|ref|YP_003860113.1| - 0.0054 16.4 5.4 0.035 13.7 5.4 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4795) Tho2 PF11262.8 gi|305663825|ref|YP_003860113.1| - 0.0055 15.9 0.4 0.0072 15.6 0.4 1.2 1 0 0 1 1 1 1 Transcription factor/nuclear export subunit protein 2 TACC_C PF05010.14 gi|305663825|ref|YP_003860113.1| - 0.0062 16.3 0.6 0.01 15.6 0.6 1.3 1 0 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Spc7 PF08317.11 gi|305663825|ref|YP_003860113.1| - 0.0068 15.3 0.6 0.0092 14.9 0.6 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein GAS PF13851.6 gi|305663825|ref|YP_003860113.1| - 0.0073 15.7 3.6 0.6 9.4 0.5 2.0 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding RmuC PF02646.16 gi|305663825|ref|YP_003860113.1| - 0.011 15.0 0.2 0.33 10.0 0.0 2.0 1 1 1 2 2 2 0 RmuC family Phlebovirus_NSM PF07246.11 gi|305663825|ref|YP_003860113.1| - 0.012 15.0 1.1 0.026 13.9 1.1 1.6 1 1 0 1 1 1 0 Phlebovirus nonstructural protein NS-M HBM PF16591.5 gi|305663825|ref|YP_003860113.1| - 0.014 14.9 0.2 0.018 14.5 0.2 1.4 1 1 0 1 1 1 0 Helical bimodular sensor domain DLP_helical PF18709.1 gi|305663825|ref|YP_003860113.1| - 0.016 14.4 1.0 0.026 13.7 0.7 1.4 1 1 0 1 1 1 0 Dynamin-like helical domain Golgin_A5 PF09787.9 gi|305663825|ref|YP_003860113.1| - 0.019 14.4 2.5 0.031 13.7 2.5 1.4 1 1 0 1 1 1 0 Golgin subfamily A member 5 Myb_DNA-bind_4 PF13837.6 gi|305663825|ref|YP_003860113.1| - 0.019 15.3 0.1 0.026 14.9 0.1 1.4 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain DUF4618 PF15397.6 gi|305663825|ref|YP_003860113.1| - 0.021 14.3 0.2 0.024 14.0 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) Rootletin PF15035.6 gi|305663825|ref|YP_003860113.1| - 0.024 14.7 4.9 0.044 13.8 4.9 1.4 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF4455 PF14643.6 gi|305663825|ref|YP_003860113.1| - 0.027 13.1 4.9 0.12 11.0 4.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4455) RIG-I_C PF18119.1 gi|305663825|ref|YP_003860113.1| - 0.027 14.5 0.3 0.036 14.1 0.3 1.3 1 1 0 1 1 1 0 RIG-I receptor C-terminal domain TelA PF05816.11 gi|305663825|ref|YP_003860113.1| - 0.031 13.4 0.3 0.032 13.3 0.3 1.1 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) Sigma54_CBD PF04963.13 gi|305663825|ref|YP_003860113.1| - 0.033 14.0 0.2 1.7 8.4 0.0 2.1 1 1 1 2 2 2 0 Sigma-54 factor, core binding domain AATF-Che1 PF13339.6 gi|305663825|ref|YP_003860113.1| - 0.034 14.8 0.3 0.65 10.7 0.3 2.3 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor XhlA PF10779.9 gi|305663825|ref|YP_003860113.1| - 0.034 14.4 3.5 0.04 14.1 1.8 2.0 1 1 0 1 1 1 0 Haemolysin XhlA YabA PF06156.13 gi|305663825|ref|YP_003860113.1| - 0.034 14.8 3.9 0.45 11.2 1.6 2.8 1 1 1 2 2 2 0 Initiation control protein YabA TPR_MLP1_2 PF07926.12 gi|305663825|ref|YP_003860113.1| - 0.045 13.8 0.6 0.11 12.5 0.6 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein HIP1_clath_bdg PF16515.5 gi|305663825|ref|YP_003860113.1| - 0.055 14.1 0.9 0.12 13.0 0.9 1.7 1 1 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Tmemb_cc2 PF10267.9 gi|305663825|ref|YP_003860113.1| - 0.067 12.3 2.3 0.077 12.1 2.3 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein OmpH PF03938.14 gi|305663825|ref|YP_003860113.1| - 0.076 13.4 0.9 0.11 12.9 0.9 1.4 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) LemA PF04011.12 gi|305663825|ref|YP_003860113.1| - 0.078 12.8 0.2 3.3 7.6 0.0 2.1 1 1 1 2 2 2 0 LemA family NYD-SP28 PF14772.6 gi|305663825|ref|YP_003860113.1| - 0.082 13.0 5.2 0.14 12.2 3.7 2.1 1 1 1 2 2 1 0 Sperm tail FapA PF03961.13 gi|305663825|ref|YP_003860113.1| - 0.11 11.0 0.9 0.12 10.9 0.9 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A FUSC PF04632.12 gi|305663825|ref|YP_003860113.1| - 0.11 11.0 2.1 0.12 10.8 2.1 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Phage_lysis PF03245.13 gi|305663825|ref|YP_003860113.1| - 0.14 12.3 0.2 2.8 8.1 0.1 2.2 1 1 1 2 2 2 0 Bacteriophage Rz lysis protein Syntaxin_2 PF14523.6 gi|305663825|ref|YP_003860113.1| - 0.16 12.4 0.1 0.25 11.7 0.1 1.4 1 1 0 1 1 1 0 Syntaxin-like protein YgaB PF14182.6 gi|305663825|ref|YP_003860113.1| - 0.16 12.4 3.1 3.5 8.1 0.6 2.6 1 1 0 2 2 2 0 YgaB-like protein DUF1515 PF07439.11 gi|305663825|ref|YP_003860113.1| - 0.2 11.7 0.9 1.2 9.2 0.6 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) DUF3201 PF11447.8 gi|305663825|ref|YP_003860113.1| - 0.2 11.2 2.3 4.2 6.9 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3201) Exonuc_VII_L PF02601.15 gi|305663825|ref|YP_003860113.1| - 0.21 11.1 0.3 0.22 11.1 0.3 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit PRKCSH_1 PF13015.6 gi|305663825|ref|YP_003860113.1| - 0.23 11.1 0.5 3.4 7.3 0.1 2.1 1 1 1 2 2 2 0 Glucosidase II beta subunit-like protein Csm1_N PF18504.1 gi|305663825|ref|YP_003860113.1| - 0.25 11.7 6.0 3.6 8.0 0.5 3.1 2 1 2 4 4 3 0 Csm1 N-terminal domain ADIP PF11559.8 gi|305663825|ref|YP_003860113.1| - 0.31 11.1 4.8 3.7 7.6 3.6 2.4 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding Vac_Fusion PF02346.16 gi|305663825|ref|YP_003860113.1| - 0.33 10.6 4.1 0.45 10.2 1.6 2.3 1 1 1 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 SpoOE-like PF09388.10 gi|305663825|ref|YP_003860113.1| - 0.65 9.9 7.1 13 5.8 0.1 3.8 3 1 1 4 4 4 0 Spo0E like sporulation regulatory protein Prefoldin_2 PF01920.20 gi|305663825|ref|YP_003860113.1| - 1.1 9.2 4.5 17 5.4 0.1 2.6 1 1 1 2 2 2 0 Prefoldin subunit G-gamma PF00631.22 gi|305663825|ref|YP_003860113.1| - 1.6 8.8 4.0 14 5.8 0.1 3.0 1 1 2 3 3 3 0 GGL domain TraC PF07820.12 gi|305663825|ref|YP_003860113.1| - 2.2 8.7 8.6 6.4 7.2 4.4 2.6 1 1 2 3 3 3 0 TraC-like protein Bac_small_YrzI PF09501.10 gi|305663825|ref|YP_003860113.1| - 2.7 8.2 4.6 20 5.4 0.7 2.5 2 0 0 2 2 2 0 Probable sporulation protein (Bac_small_yrzI) LSM PF01423.22 gi|305663826|ref|YP_003860114.1| - 0.0064 16.2 0.5 0.0064 16.2 0.5 1.7 2 1 0 2 2 2 1 LSM domain SM-ATX PF14438.6 gi|305663826|ref|YP_003860114.1| - 0.054 13.6 0.1 0.078 13.1 0.1 1.3 1 0 0 1 1 1 0 Ataxin 2 SM domain ABC_tran PF00005.27 gi|305663827|ref|YP_003860115.1| - 1.1e-24 87.5 0.0 1.6e-24 87.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663827|ref|YP_003860115.1| - 4.9e-10 39.7 3.3 5.7e-06 26.4 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663827|ref|YP_003860115.1| - 5.7e-06 25.9 0.1 0.013 14.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|305663827|ref|YP_003860115.1| - 5.1e-05 23.9 0.2 0.00013 22.6 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|305663827|ref|YP_003860115.1| - 0.00014 21.5 0.1 0.00025 20.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|305663827|ref|YP_003860115.1| - 0.00054 20.2 0.2 0.0024 18.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|305663827|ref|YP_003860115.1| - 0.0033 17.4 0.7 0.0079 16.1 0.0 1.9 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|305663827|ref|YP_003860115.1| - 0.0069 16.1 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|305663827|ref|YP_003860115.1| - 0.007 16.4 0.9 0.22 11.5 0.1 2.3 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|305663827|ref|YP_003860115.1| - 0.0074 16.2 0.1 0.027 14.4 0.0 1.8 2 0 0 2 2 2 1 NTPase T2SSE PF00437.20 gi|305663827|ref|YP_003860115.1| - 0.0078 15.3 0.0 0.014 14.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_15 PF13175.6 gi|305663827|ref|YP_003860115.1| - 0.0088 15.8 3.2 0.91 9.2 0.4 2.1 2 0 0 2 2 2 2 AAA ATPase domain cobW PF02492.19 gi|305663827|ref|YP_003860115.1| - 0.012 15.3 0.3 0.024 14.2 0.3 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|305663827|ref|YP_003860115.1| - 0.016 15.6 0.4 0.18 12.3 0.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|305663827|ref|YP_003860115.1| - 0.038 14.4 0.0 0.047 14.1 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|305663827|ref|YP_003860115.1| - 0.039 13.5 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|305663827|ref|YP_003860115.1| - 0.05 12.9 0.0 0.079 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Rad17 PF03215.15 gi|305663827|ref|YP_003860115.1| - 0.066 13.1 0.1 0.15 12.0 0.0 1.6 1 1 0 1 1 1 0 Rad17 P-loop domain SRP54 PF00448.22 gi|305663827|ref|YP_003860115.1| - 0.1 12.2 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ResIII PF04851.15 gi|305663827|ref|YP_003860115.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_27 PF13514.6 gi|305663827|ref|YP_003860115.1| - 0.14 11.8 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|305663827|ref|YP_003860115.1| - 0.23 10.7 0.0 0.29 10.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PDGLE PF13190.6 gi|305663829|ref|YP_003860117.1| - 1.2e-07 31.5 0.3 9.4e-07 28.6 0.3 1.9 1 1 0 1 1 1 1 PDGLE domain DUF4014 PF13198.6 gi|305663829|ref|YP_003860117.1| - 0.082 13.3 3.5 0.16 12.4 3.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4014) CbiM PF01891.16 gi|305663830|ref|YP_003860118.1| - 3e-60 203.6 21.6 3.5e-60 203.4 21.6 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF-ribofla_trS PF07155.12 gi|305663830|ref|YP_003860118.1| - 3.6 7.6 31.2 0.24 11.4 13.1 3.3 1 1 3 4 4 4 0 ECF-type riboflavin transporter, S component ACT_6 PF13740.6 gi|305663831|ref|YP_003860119.1| - 1.3e-17 63.5 0.4 1.5e-17 63.3 0.4 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|305663831|ref|YP_003860119.1| - 1.8e-14 53.2 1.6 2.3e-14 52.9 1.6 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|305663831|ref|YP_003860119.1| - 9e-07 29.4 1.2 1.4e-06 28.8 1.2 1.2 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|305663831|ref|YP_003860119.1| - 1.8e-05 24.5 0.9 2.5e-05 24.0 0.9 1.3 1 0 0 1 1 1 1 ACT domain DUF711 PF05167.12 gi|305663832|ref|YP_003860120.1| - 2.2e-150 501.1 5.5 2.7e-150 500.8 5.5 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) PadR PF03551.14 gi|305663833|ref|YP_003860121.1| - 1.5e-14 53.7 2.6 3.1e-14 52.7 2.6 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|305663833|ref|YP_003860121.1| - 0.00031 21.3 1.2 0.0007 20.2 1.2 1.7 1 1 0 1 1 1 1 Replication terminator protein DUF505 PF04458.12 gi|305663833|ref|YP_003860121.1| - 0.00035 19.1 0.8 0.00068 18.1 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF505) HxlR PF01638.17 gi|305663833|ref|YP_003860121.1| - 0.025 14.4 0.7 0.056 13.3 0.3 1.9 1 1 1 2 2 2 0 HxlR-like helix-turn-helix DUF4364 PF14277.6 gi|305663833|ref|YP_003860121.1| - 0.03 14.1 0.6 0.05 13.3 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) Ribosomal_S19e PF01090.19 gi|305663833|ref|YP_003860121.1| - 0.033 13.9 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e Replic_Relax PF13814.6 gi|305663833|ref|YP_003860121.1| - 0.036 14.1 0.1 0.047 13.7 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation PaaX PF07848.12 gi|305663833|ref|YP_003860121.1| - 0.047 13.9 0.0 0.12 12.6 0.0 1.7 1 0 0 1 1 1 0 PaaX-like protein Erythrovirus_X PF06795.11 gi|305663833|ref|YP_003860121.1| - 0.26 11.6 1.1 2.6 8.4 0.3 2.4 1 1 1 2 2 2 0 Erythrovirus X protein HTH_45 PF14947.6 gi|305663833|ref|YP_003860121.1| - 1 9.4 5.6 0.93 9.5 0.2 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix ABC_tran PF00005.27 gi|305663834|ref|YP_003860122.1| - 5.2e-31 108.0 0.0 6.9e-31 107.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663834|ref|YP_003860122.1| - 4.2e-07 30.1 1.5 0.0056 16.5 0.8 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663834|ref|YP_003860122.1| - 6.6e-05 22.5 0.0 0.01 15.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|305663834|ref|YP_003860122.1| - 0.00011 22.1 0.5 0.037 13.7 0.1 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|305663834|ref|YP_003860122.1| - 0.0015 18.3 0.1 0.0027 17.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|305663834|ref|YP_003860122.1| - 0.0021 18.3 0.1 0.0051 17.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|305663834|ref|YP_003860122.1| - 0.0039 17.1 0.1 1.7 8.5 0.0 2.2 2 0 0 2 2 2 2 NTPase RsgA_GTPase PF03193.16 gi|305663834|ref|YP_003860122.1| - 0.0047 16.9 0.1 0.0084 16.0 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|305663834|ref|YP_003860122.1| - 0.0056 17.2 0.2 0.0089 16.5 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|305663834|ref|YP_003860122.1| - 0.011 16.3 0.1 0.036 14.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|305663834|ref|YP_003860122.1| - 0.017 15.5 0.0 0.034 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|305663834|ref|YP_003860122.1| - 0.021 15.1 0.0 0.065 13.5 0.1 1.7 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|305663834|ref|YP_003860122.1| - 0.027 13.2 0.0 0.04 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein ATPase_2 PF01637.18 gi|305663834|ref|YP_003860122.1| - 0.033 14.1 0.0 0.088 12.7 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|305663834|ref|YP_003860122.1| - 0.038 13.1 0.3 0.068 12.2 0.1 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|305663834|ref|YP_003860122.1| - 0.04 13.6 0.5 0.056 13.2 0.0 1.5 2 0 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.23 gi|305663834|ref|YP_003860122.1| - 0.065 13.3 0.4 0.5 10.5 0.1 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.19 gi|305663834|ref|YP_003860122.1| - 0.068 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|305663834|ref|YP_003860122.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|305663834|ref|YP_003860122.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|305663834|ref|YP_003860122.1| - 0.13 11.9 0.1 0.34 10.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|305663834|ref|YP_003860122.1| - 0.14 11.4 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain G-alpha PF00503.20 gi|305663834|ref|YP_003860122.1| - 0.17 11.0 0.0 0.2 10.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Wzt_C PF14524.6 gi|305663835|ref|YP_003860123.1| - 0.0091 16.0 1.5 1.9 8.5 0.0 4.3 4 0 0 4 4 4 1 Wzt C-terminal domain DUF2970 PF11174.8 gi|305663835|ref|YP_003860123.1| - 0.012 15.5 0.7 0.029 14.2 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2970) CARDB PF07705.11 gi|305663835|ref|YP_003860123.1| - 0.024 14.9 5.7 0.68 10.2 0.0 5.1 6 0 0 6 6 6 0 CARDB Y_Y_Y PF07495.13 gi|305663835|ref|YP_003860123.1| - 0.03 14.3 1.7 2.1 8.4 0.1 4.0 3 0 0 3 3 3 0 Y_Y_Y domain MacB_PCD PF12704.7 gi|305663836|ref|YP_003860124.1| - 1.3e-16 61.6 1.7 1.3e-16 61.6 1.7 1.8 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|305663836|ref|YP_003860124.1| - 2.2e-13 50.5 4.6 2.2e-13 50.5 4.6 3.5 3 0 0 3 3 3 1 FtsX-like permease family DUF1408 PF07193.11 gi|305663836|ref|YP_003860124.1| - 0.018 15.2 0.1 0.043 14.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1408) Peptidase_M28 PF04389.17 gi|305663837|ref|YP_003860125.1| - 4.7e-16 59.1 0.0 1.1e-15 57.9 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M28 DUF4910 PF16254.5 gi|305663837|ref|YP_003860125.1| - 0.0091 14.9 0.1 0.092 11.6 0.1 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4910) DUF1500 PF07389.12 gi|305663837|ref|YP_003860125.1| - 0.019 15.0 1.1 0.66 10.1 0.2 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1500) RE_R_Pab1 PF09522.10 gi|305663837|ref|YP_003860125.1| - 0.023 14.8 1.3 0.46 10.6 0.3 2.6 2 1 0 2 2 2 0 R.Pab1 restriction endonuclease Peptidase_M20 PF01546.28 gi|305663837|ref|YP_003860125.1| - 0.21 11.3 0.0 0.96 9.1 0.0 1.9 2 0 0 2 2 2 0 Peptidase family M20/M25/M40 AAA_5 PF07728.14 gi|305663838|ref|YP_003860126.1| - 4.9e-28 97.8 0.0 3.4e-27 95.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|305663838|ref|YP_003860126.1| - 3.1e-06 27.0 0.8 1.3e-05 25.0 0.0 2.3 2 0 0 2 2 2 1 AAA lid domain AAA_3 PF07726.11 gi|305663838|ref|YP_003860126.1| - 6.4e-06 26.1 0.0 1.2e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|305663838|ref|YP_003860126.1| - 6.2e-05 23.4 0.0 0.00011 22.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain MCM PF00493.23 gi|305663838|ref|YP_003860126.1| - 6.9e-05 22.0 0.0 0.00013 21.2 0.0 1.6 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|305663838|ref|YP_003860126.1| - 9.1e-05 22.9 0.0 0.00034 21.0 0.0 2.1 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|305663838|ref|YP_003860126.1| - 0.00021 20.8 0.1 0.0024 17.3 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|305663838|ref|YP_003860126.1| - 0.0017 18.6 0.1 0.0077 16.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|305663838|ref|YP_003860126.1| - 0.0084 15.6 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region RuvB_N PF05496.12 gi|305663838|ref|YP_003860126.1| - 0.016 14.9 0.2 0.13 12.0 0.2 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 gi|305663838|ref|YP_003860126.1| - 0.017 14.9 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|305663838|ref|YP_003860126.1| - 0.038 13.7 0.0 0.069 12.9 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Sigma54_activat PF00158.26 gi|305663838|ref|YP_003860126.1| - 0.066 12.9 0.1 0.56 9.9 0.1 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|305663838|ref|YP_003860126.1| - 0.089 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein VWA_2 PF13519.6 gi|305663839|ref|YP_003860127.1| - 1.1e-08 35.6 0.2 2.2e-07 31.5 0.0 2.7 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA PF00092.28 gi|305663839|ref|YP_003860127.1| - 1.5e-08 35.1 0.3 1.5e-08 35.1 0.3 2.3 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|305663839|ref|YP_003860127.1| - 4.7e-06 26.6 0.0 1e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|305663839|ref|YP_003860127.1| - 2.9e-05 23.6 0.0 6e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein PK PF00224.21 gi|305663840|ref|YP_003860128.1| - 7.5e-93 311.2 1.6 1.1e-92 310.6 1.6 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|305663840|ref|YP_003860128.1| - 3.6e-18 65.9 0.0 1.3e-17 64.1 0.0 2.0 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|305663840|ref|YP_003860128.1| - 4e-05 22.8 0.5 0.00022 20.4 0.1 2.1 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Thioredoxin_8 PF13905.6 gi|305663841|ref|YP_003860129.1| - 0.13 12.7 0.2 0.32 11.3 0.1 1.8 2 0 0 2 2 2 0 Thioredoxin-like Arabinose_Isome PF02610.15 gi|305663842|ref|YP_003860130.1| - 0.18 11.0 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 L-arabinose isomerase Flavin_Reduct PF01613.18 gi|305663843|ref|YP_003860131.1| - 2e-17 63.7 0.0 2.4e-17 63.4 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Epimerase PF01370.21 gi|305663844|ref|YP_003860132.1| - 2.8e-48 164.5 0.0 4.2e-48 163.9 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|305663844|ref|YP_003860132.1| - 1.8e-46 159.1 0.0 2.1e-46 158.9 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|305663844|ref|YP_003860132.1| - 8.6e-19 67.6 0.0 1.1e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|305663844|ref|YP_003860132.1| - 1.3e-14 54.0 0.0 8.6e-14 51.3 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|305663844|ref|YP_003860132.1| - 5.1e-11 42.2 0.0 6.2e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|305663844|ref|YP_003860132.1| - 1.8e-07 30.6 0.0 3.2e-05 23.2 0.0 2.4 1 1 0 1 1 1 1 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|305663844|ref|YP_003860132.1| - 7.5e-05 23.0 0.0 0.00011 22.4 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Ldh_1_N PF00056.23 gi|305663844|ref|YP_003860132.1| - 0.024 14.7 0.0 0.054 13.6 0.0 1.6 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|305663844|ref|YP_003860132.1| - 0.028 14.7 0.0 0.059 13.6 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain adh_short PF00106.25 gi|305663844|ref|YP_003860132.1| - 0.053 13.0 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase DUF711 PF05167.12 gi|305663845|ref|YP_003860133.1| - 1.4e-34 119.7 0.0 2.1e-34 119.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) NurA PF09376.10 gi|305663846|ref|YP_003860134.1| - 4.2e-11 43.0 3.0 7e-11 42.3 3.0 1.4 1 1 0 1 1 1 1 NurA domain Nrap_D2 PF17403.2 gi|305663846|ref|YP_003860134.1| - 0.14 11.9 0.1 0.27 11.0 0.1 1.4 1 0 0 1 1 1 0 Nrap protein PAP/OAS-like domain Thioredoxin PF00085.20 gi|305663847|ref|YP_003860135.1| - 5.2e-10 39.2 0.0 7.3e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|305663847|ref|YP_003860135.1| - 2.5e-08 34.3 0.6 6.5e-08 33.0 0.6 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|305663847|ref|YP_003860135.1| - 7.8e-05 22.6 0.1 0.00015 21.8 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|305663847|ref|YP_003860135.1| - 0.0025 17.7 0.1 0.0033 17.3 0.1 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|305663847|ref|YP_003860135.1| - 0.015 15.1 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin OST3_OST6 PF04756.13 gi|305663847|ref|YP_003860135.1| - 0.025 13.9 1.2 0.062 12.6 0.9 1.6 1 1 1 2 2 2 0 OST3 / OST6 family, transporter family Thioredoxin_7 PF13899.6 gi|305663847|ref|YP_003860135.1| - 0.065 13.4 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 Thioredoxin-like DUF123 PF01986.16 gi|305663848|ref|YP_003860136.1| - 3.4e-24 85.2 0.0 4.9e-24 84.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.24 gi|305663848|ref|YP_003860136.1| - 0.014 15.7 0.3 0.029 14.7 0.3 1.5 1 0 0 1 1 1 0 GIY-YIG catalytic domain YvfG PF09628.10 gi|305663849|ref|YP_003860137.1| - 0.28 11.6 1.7 1 9.8 0.1 2.6 3 0 0 3 3 3 0 YvfG protein Prok-JAB PF14464.6 gi|305663850|ref|YP_003860138.1| - 1.4e-08 34.5 0.0 1.8e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HKR_ArcB_TM PF18415.1 gi|305663850|ref|YP_003860138.1| - 0.074 13.9 0.0 0.13 13.0 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase receptor ArcB trans-membrane domain SBF_like PF13593.6 gi|305663850|ref|YP_003860138.1| - 0.12 11.6 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 SBF-like CPA transporter family (DUF4137) Isochorismatase PF00857.20 gi|305663851|ref|YP_003860139.1| - 1.2e-37 129.7 0.0 1.4e-37 129.6 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Thioredoxin_6 PF13848.6 gi|305663851|ref|YP_003860139.1| - 0.13 12.1 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain Archease PF01951.16 gi|305663852|ref|YP_003860140.1| - 4.7e-48 162.9 0.3 5.2e-48 162.8 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF2258 PF10015.9 gi|305663852|ref|YP_003860140.1| - 0.072 13.2 0.0 0.74 10.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2258) AGOG PF09171.10 gi|305663853|ref|YP_003860141.1| - 1.7e-75 253.6 0.2 2e-75 253.3 0.2 1.1 1 0 0 1 1 1 1 N-glycosylase/DNA lyase HIT PF01230.23 gi|305663854|ref|YP_003860142.1| - 8.7e-14 52.1 0.1 1.6e-13 51.2 0.1 1.4 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|305663854|ref|YP_003860142.1| - 2.7e-06 27.8 0.2 4.3e-06 27.2 0.2 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|305663854|ref|YP_003860142.1| - 1.6e-05 24.8 1.9 3.1e-05 23.8 1.9 1.5 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Peptidase_A24 PF01478.18 gi|305663855|ref|YP_003860143.1| - 0.00013 22.3 16.1 0.00013 22.3 16.1 2.2 2 1 1 3 3 3 1 Type IV leader peptidase family Rad51 PF08423.11 gi|305663856|ref|YP_003860144.1| - 7.5e-93 310.5 0.0 9.2e-93 310.2 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|305663856|ref|YP_003860144.1| - 4.8e-15 55.7 0.2 6.4e-15 55.3 0.2 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|305663856|ref|YP_003860144.1| - 6.8e-11 42.0 0.0 1.1e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|305663856|ref|YP_003860144.1| - 1.7e-06 27.7 0.0 2.7e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|305663856|ref|YP_003860144.1| - 0.00058 20.4 1.4 0.003 18.1 0.2 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_18 PF13238.6 gi|305663856|ref|YP_003860144.1| - 0.0011 19.5 0.0 0.0035 17.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain DUF4332 PF14229.6 gi|305663856|ref|YP_003860144.1| - 0.0053 17.0 1.1 0.013 15.8 0.5 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) RNA_pol_A_CTD PF03118.15 gi|305663856|ref|YP_003860144.1| - 0.0092 15.7 0.8 0.045 13.5 0.3 2.3 2 0 0 2 2 2 1 Bacterial RNA polymerase, alpha chain C terminal domain AAA_22 PF13401.6 gi|305663856|ref|YP_003860144.1| - 0.015 15.6 0.0 0.05 13.9 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF2857 PF11198.8 gi|305663856|ref|YP_003860144.1| - 0.048 13.4 0.3 0.11 12.3 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2857) PduV-EutP PF10662.9 gi|305663856|ref|YP_003860144.1| - 0.05 13.3 0.1 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation TrwB_AAD_bind PF10412.9 gi|305663856|ref|YP_003860144.1| - 0.055 12.4 0.0 0.11 11.3 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PAXNEB PF05625.11 gi|305663856|ref|YP_003860144.1| - 0.057 12.5 0.1 0.77 8.8 0.1 2.0 2 0 0 2 2 2 0 PAXNEB protein tRNA-Thr_ED PF08915.11 gi|305663857|ref|YP_003860145.1| - 9.5e-52 174.7 0.1 1.9e-51 173.7 0.1 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|305663857|ref|YP_003860145.1| - 3.4e-28 97.7 0.7 2.1e-26 91.9 0.7 2.9 2 1 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|305663857|ref|YP_003860145.1| - 3e-19 69.7 0.6 1.1e-18 67.8 0.2 2.1 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon2 PF12745.7 gi|305663857|ref|YP_003860145.1| - 0.0055 16.2 0.0 0.0093 15.5 0.0 1.3 1 0 0 1 1 1 1 Anticodon binding domain of tRNAs CAP18_C PF12153.8 gi|305663857|ref|YP_003860145.1| - 1.7 8.6 5.3 0.32 10.9 0.9 2.1 2 0 0 2 2 2 0 LPS binding domain of CAP18 (C terminal) GHMP_kinases_C PF08544.13 gi|305663858|ref|YP_003860146.1| - 2.3e-11 43.9 0.2 5.3e-11 42.7 0.2 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|305663858|ref|YP_003860146.1| - 4.5e-11 42.8 0.2 1.3e-10 41.3 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain RSV_NS2 PF03113.14 gi|305663858|ref|YP_003860146.1| - 0.017 15.1 0.1 0.076 13.0 0.0 2.1 2 1 0 2 2 2 0 Respiratory synctial virus non-structural protein NS2 Cas6b_C PF17262.2 gi|305663858|ref|YP_003860146.1| - 0.026 14.6 0.0 0.23 11.6 0.0 2.3 2 0 0 2 2 2 0 Cas6b C-terminal domain Mrr_cat PF04471.12 gi|305663859|ref|YP_003860147.1| - 5.5e-06 26.4 0.0 1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.17 gi|305663859|ref|YP_003860147.1| - 0.00058 20.1 0.4 0.00093 19.4 0.4 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 NERD PF08378.11 gi|305663859|ref|YP_003860147.1| - 0.01 16.3 2.7 0.016 15.6 2.3 1.6 1 1 0 1 1 1 0 Nuclease-related domain DUF234 PF03008.14 gi|305663859|ref|YP_003860147.1| - 0.094 13.2 2.2 0.23 11.9 2.2 1.7 1 1 0 1 1 1 0 Archaea bacterial proteins of unknown function Memo PF01875.17 gi|305663860|ref|YP_003860148.1| - 1.5e-60 204.7 0.0 1.8e-60 204.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein Aldo_ket_red PF00248.21 gi|305663861|ref|YP_003860149.1| - 1.9e-55 188.1 0.1 3.1e-53 180.9 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family GP3_package PF16677.5 gi|305663861|ref|YP_003860149.1| - 0.021 15.0 0.1 0.43 10.7 0.0 2.3 2 0 0 2 2 2 0 DNA-packaging protein gp3 URO-D PF01208.17 gi|305663862|ref|YP_003860150.1| - 0.059 12.5 0.1 4.1 6.5 0.0 2.1 2 0 0 2 2 2 0 Uroporphyrinogen decarboxylase (URO-D) P2_Phage_GpR PF06891.11 gi|305663862|ref|YP_003860150.1| - 0.069 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 P2 phage tail completion protein R (GpR) HTH_Tnp_Tc3_1 PF11427.8 gi|305663862|ref|YP_003860150.1| - 0.74 9.7 2.7 5.5 6.9 0.0 2.8 3 0 0 3 3 3 0 Tc3 transposase Cob_adeno_trans PF01923.18 gi|305663866|ref|YP_003860154.1| - 1.1e-36 126.5 0.0 1.3e-36 126.2 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase UbiA PF01040.18 gi|305663867|ref|YP_003860155.1| - 3.6e-40 137.9 17.3 4.7e-40 137.5 17.3 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family FAD_oxidored PF12831.7 gi|305663868|ref|YP_003860156.1| - 8.9e-08 31.9 0.0 0.00034 20.1 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|305663868|ref|YP_003860156.1| - 1.8e-07 30.6 0.1 2.7e-07 30.0 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|305663868|ref|YP_003860156.1| - 5.3e-07 29.2 3.1 0.00013 21.4 0.1 2.7 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|305663868|ref|YP_003860156.1| - 7.4e-07 29.1 0.1 1.4e-05 24.9 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|305663868|ref|YP_003860156.1| - 7.5e-07 28.6 0.1 4e-06 26.2 0.3 1.9 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|305663868|ref|YP_003860156.1| - 1.3e-06 27.8 0.6 0.037 13.1 0.2 2.4 3 0 0 3 3 3 2 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|305663868|ref|YP_003860156.1| - 3.6e-06 26.1 0.1 0.11 11.4 0.2 3.0 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|305663868|ref|YP_003860156.1| - 1.4e-05 24.5 0.1 2.2e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|305663868|ref|YP_003860156.1| - 1.5e-05 23.9 0.4 4.5e-05 22.3 0.4 1.7 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|305663868|ref|YP_003860156.1| - 2.6e-05 23.6 0.5 5.2e-05 22.6 0.2 1.7 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|305663868|ref|YP_003860156.1| - 6.9e-05 23.0 3.3 7.9e-05 22.8 0.1 2.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|305663868|ref|YP_003860156.1| - 0.00089 19.8 1.2 0.0026 18.3 0.9 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|305663868|ref|YP_003860156.1| - 0.0057 16.0 0.2 0.01 15.1 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain SE PF08491.10 gi|305663868|ref|YP_003860156.1| - 0.026 13.6 0.0 0.041 12.9 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase Pyr_redox_3 PF13738.6 gi|305663868|ref|YP_003860156.1| - 0.17 11.1 0.2 0.27 10.5 0.2 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Methyltr_RsmB-F PF01189.17 gi|305663869|ref|YP_003860157.1| - 3.5e-46 157.4 0.0 5e-46 156.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|305663869|ref|YP_003860157.1| - 2.5e-06 27.9 0.0 4.9e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|305663869|ref|YP_003860157.1| - 0.002 18.0 0.0 0.004 17.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain TRM PF02005.16 gi|305663869|ref|YP_003860157.1| - 0.013 14.7 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|305663869|ref|YP_003860157.1| - 0.079 12.6 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|305663869|ref|YP_003860157.1| - 0.15 11.4 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CTP_synth_N PF06418.14 gi|305663870|ref|YP_003860158.1| - 5.8e-125 415.9 2.1 8e-125 415.5 2.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|305663870|ref|YP_003860158.1| - 1.1e-47 162.3 0.0 2.4e-47 161.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|305663870|ref|YP_003860158.1| - 1.5e-07 31.4 0.0 4.3e-07 29.9 0.0 1.8 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|305663870|ref|YP_003860158.1| - 5.9e-05 23.1 0.0 0.00012 22.2 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|305663870|ref|YP_003860158.1| - 0.11 12.4 0.1 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Sigma_reg_N PF13800.6 gi|305663871|ref|YP_003860159.1| - 0.075 13.3 1.2 0.16 12.3 0.4 1.8 2 0 0 2 2 2 0 Sigma factor regulator N-terminal TRSP PF12500.8 gi|305663871|ref|YP_003860159.1| - 0.22 11.4 1.3 1.4 8.8 1.3 1.9 1 1 0 1 1 1 0 TRSP domain C terminus to PRTase_2 AAA PF00004.29 gi|305663873|ref|YP_003860161.1| - 9.5e-23 81.1 0.3 4.4e-22 78.9 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|305663873|ref|YP_003860161.1| - 4.9e-06 27.0 0.1 4.1e-05 24.0 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|305663873|ref|YP_003860161.1| - 2.8e-05 24.3 0.0 9.5e-05 22.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|305663873|ref|YP_003860161.1| - 4.7e-05 23.7 3.2 0.018 15.3 0.6 3.4 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|305663873|ref|YP_003860161.1| - 0.00023 20.5 0.0 0.00044 19.6 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_5 PF07728.14 gi|305663873|ref|YP_003860161.1| - 0.00043 20.3 0.1 0.0013 18.8 0.0 1.9 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|305663873|ref|YP_003860161.1| - 0.00083 19.7 0.0 0.004 17.5 0.0 2.2 2 0 0 2 2 1 1 RNA helicase IstB_IS21 PF01695.17 gi|305663873|ref|YP_003860161.1| - 0.0017 18.1 0.2 0.0068 16.1 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF815 PF05673.13 gi|305663873|ref|YP_003860161.1| - 0.0035 16.5 0.5 0.063 12.4 0.0 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|305663873|ref|YP_003860161.1| - 0.0049 16.1 0.2 0.019 14.2 0.0 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|305663873|ref|YP_003860161.1| - 0.0065 17.0 0.0 0.025 15.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|305663873|ref|YP_003860161.1| - 0.007 16.4 0.0 0.034 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|305663873|ref|YP_003860161.1| - 0.01 15.6 0.0 0.037 13.8 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|305663873|ref|YP_003860161.1| - 0.018 15.0 0.5 0.56 10.1 0.0 2.7 3 0 0 3 3 3 0 NACHT domain AAA_28 PF13521.6 gi|305663873|ref|YP_003860161.1| - 0.024 14.9 0.0 0.059 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|305663873|ref|YP_003860161.1| - 0.035 13.6 0.0 0.092 12.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing dynein motor region KTI12 PF08433.10 gi|305663873|ref|YP_003860161.1| - 0.046 13.2 0.0 0.2 11.1 0.0 2.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_23 PF13476.6 gi|305663873|ref|YP_003860161.1| - 0.054 14.0 0.1 0.23 12.0 0.0 2.1 2 2 1 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|305663873|ref|YP_003860161.1| - 0.058 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_lid_3 PF17862.1 gi|305663873|ref|YP_003860161.1| - 0.059 13.2 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA+ lid domain Mg_chelatase PF01078.21 gi|305663873|ref|YP_003860161.1| - 0.065 12.6 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 gi|305663873|ref|YP_003860161.1| - 0.16 12.1 0.8 0.74 9.9 0.0 2.4 2 2 0 2 2 2 0 50S ribosome-binding GTPase MJ1316 PF04457.12 gi|305663875|ref|YP_003860163.1| - 3.4e-10 40.5 1.6 4.6e-10 40.1 1.6 1.2 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain AFOR_N PF02730.15 gi|305663876|ref|YP_003860164.1| - 1.5e-40 139.2 0.1 2.4e-40 138.5 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|305663876|ref|YP_003860164.1| - 2.8e-18 66.1 0.0 6.5e-18 64.9 0.0 1.4 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 YkyB PF14177.6 gi|305663876|ref|YP_003860164.1| - 0.079 13.2 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 YkyB-like protein DUF58 PF01882.18 gi|305663877|ref|YP_003860165.1| - 2.3e-15 56.6 0.0 4e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 TEX13 PF15186.6 gi|305663877|ref|YP_003860165.1| - 0.22 11.2 0.3 0.37 10.5 0.3 1.3 1 0 0 1 1 1 0 Testis-expressed sequence 13 protein family AAA_3 PF07726.11 gi|305663878|ref|YP_003860166.1| - 4.9e-61 204.3 0.1 9.1e-61 203.5 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|305663878|ref|YP_003860166.1| - 2.5e-15 56.7 0.0 5.6e-15 55.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|305663878|ref|YP_003860166.1| - 2.1e-14 53.1 0.0 3.7e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|305663878|ref|YP_003860166.1| - 7.5e-07 29.6 0.1 2e-06 28.2 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|305663878|ref|YP_003860166.1| - 2.1e-06 27.5 0.0 7e-06 25.9 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|305663878|ref|YP_003860166.1| - 7.1e-06 25.3 0.0 1.3e-05 24.4 0.0 1.4 1 1 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|305663878|ref|YP_003860166.1| - 7e-05 22.6 0.2 0.00059 19.6 0.2 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|305663878|ref|YP_003860166.1| - 0.0024 17.3 0.3 1.8 7.9 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI LytR_cpsA_psr PF03816.14 gi|305663879|ref|YP_003860167.1| - 0.2 11.8 2.9 4.6 7.4 0.0 2.5 2 0 0 2 2 2 0 Cell envelope-related transcriptional attenuator domain PrgI PF12666.7 gi|305663880|ref|YP_003860168.1| - 6.1 7.6 9.5 1.7 9.4 1.5 2.3 2 0 0 2 2 2 0 PrgI family protein HTH_5 PF01022.20 gi|305663883|ref|YP_003860171.1| - 3.2e-08 33.3 0.1 6.1e-08 32.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|305663883|ref|YP_003860171.1| - 1.4e-07 31.4 0.1 2.5e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|305663883|ref|YP_003860171.1| - 6.1e-06 26.1 0.0 1.2e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|305663883|ref|YP_003860171.1| - 1.1e-05 25.2 0.1 1.9e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|305663883|ref|YP_003860171.1| - 1.6e-05 24.3 0.2 3.2e-05 23.4 0.2 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|305663883|ref|YP_003860171.1| - 0.0041 17.3 0.0 0.0083 16.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|305663883|ref|YP_003860171.1| - 0.0051 16.7 0.1 0.014 15.4 0.1 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|305663883|ref|YP_003860171.1| - 0.018 15.2 0.1 0.033 14.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|305663883|ref|YP_003860171.1| - 0.018 14.9 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|305663883|ref|YP_003860171.1| - 0.023 14.7 0.1 0.036 14.0 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|305663883|ref|YP_003860171.1| - 0.026 14.9 0.2 0.042 14.2 0.2 1.5 1 1 0 1 1 1 0 Transcriptional regulator HTH_38 PF13936.6 gi|305663883|ref|YP_003860171.1| - 0.032 14.0 0.5 0.05 13.4 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain CelTOS PF18659.1 gi|305663883|ref|YP_003860171.1| - 0.035 14.5 0.1 0.056 13.9 0.1 1.3 1 0 0 1 1 1 0 Cell-traversal protein for ookinetes and sporozoites DUF4004 PF13171.6 gi|305663883|ref|YP_003860171.1| - 0.036 14.3 0.1 0.046 14.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4004) KorB PF08535.10 gi|305663883|ref|YP_003860171.1| - 0.067 13.2 0.1 0.13 12.3 0.1 1.6 1 1 0 1 1 1 0 KorB domain HTH_11 PF08279.12 gi|305663883|ref|YP_003860171.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain Cren7 PF11520.8 gi|305663884|ref|YP_003860172.1| - 9.1e-12 44.7 0.0 9.9e-12 44.6 0.0 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 LigT_PEase PF02834.16 gi|305663885|ref|YP_003860173.1| - 4.2e-28 97.4 0.0 9.4e-18 64.2 0.0 2.2 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|305663885|ref|YP_003860173.1| - 6.8e-16 58.8 0.0 8.2e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.6 gi|305663885|ref|YP_003860173.1| - 9.1e-09 35.4 0.0 1.1e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily DUF3557 PF12078.8 gi|305663885|ref|YP_003860173.1| - 0.0022 18.0 0.1 0.0034 17.4 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3557) UxuA PF03786.13 gi|305663885|ref|YP_003860173.1| - 0.094 11.5 0.2 0.16 10.8 0.2 1.3 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) DegQ PF08181.11 gi|305663885|ref|YP_003860173.1| - 0.17 12.0 1.4 0.4 10.8 0.1 2.3 3 0 0 3 3 3 0 DegQ (SacQ) family tRNA_NucTransf2 PF09249.11 gi|305663886|ref|YP_003860174.1| - 3.3e-37 127.2 0.1 7.3e-37 126.1 0.0 1.6 2 0 0 2 2 2 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|305663886|ref|YP_003860174.1| - 8.9e-14 51.6 0.2 2.8e-13 50.0 0.0 2.0 2 0 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|305663886|ref|YP_003860174.1| - 1.1e-06 28.9 0.1 2.2e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Polbeta PF18765.1 gi|305663886|ref|YP_003860174.1| - 0.00028 20.9 0.2 0.002 18.2 0.0 2.3 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase zf_UBZ PF18439.1 gi|305663887|ref|YP_003860175.1| - 0.00051 19.6 1.7 0.65 9.7 0.1 2.2 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|305663887|ref|YP_003860175.1| - 0.0011 19.1 0.8 0.23 11.6 0.3 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|305663887|ref|YP_003860175.1| - 0.0012 18.2 2.9 0.047 13.1 0.6 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|305663887|ref|YP_003860175.1| - 0.028 14.4 0.4 4.2 7.4 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|305663887|ref|YP_003860175.1| - 0.029 14.3 1.9 0.36 10.8 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_4 PF13717.6 gi|305663887|ref|YP_003860175.1| - 0.038 13.9 2.8 1.3 9.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-P11 PF03854.14 gi|305663887|ref|YP_003860175.1| - 0.038 13.6 1.3 0.097 12.4 1.3 1.7 1 1 0 1 1 1 0 P-11 zinc finger Sgf11 PF08209.11 gi|305663887|ref|YP_003860175.1| - 0.054 13.1 2.6 0.36 10.4 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc-ribbons_6 PF07191.12 gi|305663887|ref|YP_003860175.1| - 0.079 13.0 1.2 0.58 10.2 1.2 1.9 1 1 0 1 1 1 0 zinc-ribbons DiS_P_DiS PF06750.13 gi|305663887|ref|YP_003860175.1| - 0.18 12.0 1.4 3.6 7.8 1.4 2.0 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain zf-FPG_IleRS PF06827.14 gi|305663887|ref|YP_003860175.1| - 0.18 11.7 2.7 0.63 10.0 0.2 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.6 gi|305663887|ref|YP_003860175.1| - 0.18 11.5 4.1 0.87 9.4 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF2757 PF10955.8 gi|305663887|ref|YP_003860175.1| - 0.21 11.9 2.5 2.1 8.6 0.4 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2757) T4_baseplate PF12322.8 gi|305663887|ref|YP_003860175.1| - 0.21 11.0 0.9 1.9 7.9 0.9 1.9 1 1 0 1 1 1 0 T4 bacteriophage base plate protein zf-RING_4 PF14570.6 gi|305663887|ref|YP_003860175.1| - 0.31 10.8 4.0 1.6 8.6 4.0 1.9 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain TFIIS_C PF01096.18 gi|305663887|ref|YP_003860175.1| - 0.41 10.5 5.1 0.6 10.0 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ACC PF17848.1 gi|305663887|ref|YP_003860175.1| - 0.41 10.7 7.4 3.3 7.8 0.6 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain MCM PF00493.23 gi|305663889|ref|YP_003860177.1| - 6.4e-101 336.1 0.0 1.1e-100 335.3 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|305663889|ref|YP_003860177.1| - 2.7e-34 117.7 0.0 4.4e-34 117.1 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|305663889|ref|YP_003860177.1| - 4.6e-30 103.9 2.4 4.6e-30 103.9 2.4 2.6 3 0 0 3 3 3 1 MCM AAA-lid domain MCM_N PF14551.6 gi|305663889|ref|YP_003860177.1| - 5.1e-16 59.2 0.3 1.7e-15 57.5 0.1 2.0 2 0 0 2 2 1 1 MCM N-terminal domain AAA_5 PF07728.14 gi|305663889|ref|YP_003860177.1| - 1.8e-09 37.7 0.0 5.7e-09 36.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|305663889|ref|YP_003860177.1| - 1.2e-06 28.0 0.0 0.00057 19.3 0.0 2.4 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|305663889|ref|YP_003860177.1| - 1.4e-05 24.9 0.0 3.3e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF3987 PF13148.6 gi|305663889|ref|YP_003860177.1| - 0.00039 19.5 0.4 0.068 12.2 0.4 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3987) Sigma54_activat PF00158.26 gi|305663889|ref|YP_003860177.1| - 0.00054 19.7 0.1 0.0017 18.1 0.1 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain EAP30 PF04157.16 gi|305663889|ref|YP_003860177.1| - 0.015 14.6 0.2 0.036 13.3 0.2 1.6 1 0 0 1 1 1 0 EAP30/Vps36 family AAA_16 PF13191.6 gi|305663889|ref|YP_003860177.1| - 0.017 15.5 0.2 0.097 13.0 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AbiEi_4 PF13338.6 gi|305663889|ref|YP_003860177.1| - 0.033 14.3 0.0 0.1 12.8 0.0 2.0 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin CMD PF02627.20 gi|305663889|ref|YP_003860177.1| - 0.04 14.0 0.4 0.11 12.5 0.4 1.8 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family DNA_pol_D_N PF18018.1 gi|305663889|ref|YP_003860177.1| - 0.096 12.8 0.4 0.47 10.6 0.1 2.4 2 1 0 2 2 2 0 DNA polymerase delta subunit OB-fold domain SRP54_N PF02881.19 gi|305663889|ref|YP_003860177.1| - 5.5 7.3 8.0 0.38 11.0 0.5 3.0 4 0 0 4 4 3 0 SRP54-type protein, helical bundle domain Sld5 PF05916.11 gi|305663890|ref|YP_003860178.1| - 4.3e-05 23.9 0.3 6.5e-05 23.4 0.3 1.3 1 0 0 1 1 1 1 GINS complex protein Rep_fac_C PF08542.11 gi|305663891|ref|YP_003860179.1| - 3.6e-23 81.8 0.4 9.9e-23 80.4 0.2 1.9 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|305663891|ref|YP_003860179.1| - 3.9e-15 56.4 0.0 9.4e-15 55.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|305663891|ref|YP_003860179.1| - 4.8e-15 55.7 0.0 5.9e-11 42.4 0.1 2.4 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|305663891|ref|YP_003860179.1| - 7.6e-07 29.0 0.1 2e-06 27.6 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|305663891|ref|YP_003860179.1| - 7.2e-06 26.5 0.0 0.0012 19.2 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|305663891|ref|YP_003860179.1| - 9.5e-06 25.9 0.2 0.14 12.4 0.0 3.0 1 1 2 3 3 3 2 AAA domain AAA_3 PF07726.11 gi|305663891|ref|YP_003860179.1| - 1.1e-05 25.3 0.0 2.5e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_assoc_2 PF16193.5 gi|305663891|ref|YP_003860179.1| - 1.7e-05 25.1 0.1 5.7e-05 23.4 0.0 2.0 2 0 0 2 2 1 1 AAA C-terminal domain IstB_IS21 PF01695.17 gi|305663891|ref|YP_003860179.1| - 2.7e-05 24.0 0.0 9.6e-05 22.2 0.0 1.9 2 0 0 2 2 1 1 IstB-like ATP binding protein Rad17 PF03215.15 gi|305663891|ref|YP_003860179.1| - 3.5e-05 23.8 0.1 0.00019 21.4 0.0 2.2 2 1 0 2 2 1 1 Rad17 P-loop domain AAA_5 PF07728.14 gi|305663891|ref|YP_003860179.1| - 8.3e-05 22.6 0.0 0.00027 20.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ResIII PF04851.15 gi|305663891|ref|YP_003860179.1| - 8.8e-05 22.6 0.0 0.0025 17.8 0.0 2.2 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|305663891|ref|YP_003860179.1| - 0.00014 21.4 0.0 0.048 13.1 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein DNA_pol3_delta PF06144.13 gi|305663891|ref|YP_003860179.1| - 0.00017 21.4 0.0 0.00037 20.3 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit TniB PF05621.11 gi|305663891|ref|YP_003860179.1| - 0.00048 19.6 0.1 0.041 13.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein AAA_14 PF13173.6 gi|305663891|ref|YP_003860179.1| - 0.00054 20.0 0.0 0.00096 19.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|305663891|ref|YP_003860179.1| - 0.0011 18.8 0.0 0.0073 16.1 0.0 1.9 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|305663891|ref|YP_003860179.1| - 0.0012 18.3 0.0 0.1 11.9 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|305663891|ref|YP_003860179.1| - 0.0012 18.5 0.1 0.0043 16.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|305663891|ref|YP_003860179.1| - 0.002 17.4 0.0 0.0038 16.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|305663891|ref|YP_003860179.1| - 0.002 18.7 0.0 0.0057 17.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain DEAD PF00270.29 gi|305663891|ref|YP_003860179.1| - 0.0049 16.6 0.2 2.1 8.1 0.1 2.5 1 1 0 2 2 2 1 DEAD/DEAH box helicase FtsK_SpoIIIE PF01580.18 gi|305663891|ref|YP_003860179.1| - 0.016 14.6 0.0 0.049 13.0 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_7 PF12775.7 gi|305663891|ref|YP_003860179.1| - 0.022 14.3 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|305663891|ref|YP_003860179.1| - 0.025 13.6 0.0 0.15 11.1 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF815 PF05673.13 gi|305663891|ref|YP_003860179.1| - 0.033 13.4 0.0 0.048 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|305663891|ref|YP_003860179.1| - 0.034 14.4 0.0 0.06 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|305663891|ref|YP_003860179.1| - 0.046 13.6 0.1 3 7.7 0.0 2.4 1 1 1 2 2 2 0 NTPase Viral_helicase1 PF01443.18 gi|305663891|ref|YP_003860179.1| - 0.061 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.6 gi|305663891|ref|YP_003860179.1| - 0.064 13.4 0.1 0.12 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|305663891|ref|YP_003860179.1| - 0.076 12.9 0.0 0.15 11.9 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|305663891|ref|YP_003860179.1| - 0.078 12.7 0.8 0.49 10.1 0.5 2.4 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|305663891|ref|YP_003860179.1| - 0.091 12.5 0.1 0.4 10.4 0.1 2.1 2 1 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|305663891|ref|YP_003860179.1| - 0.095 12.1 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF2075 PF09848.9 gi|305663891|ref|YP_003860179.1| - 0.1 11.8 0.1 0.84 8.8 0.1 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|305663891|ref|YP_003860179.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|305663891|ref|YP_003860179.1| - 0.25 11.7 0.6 1.7 9.0 0.1 2.2 1 1 1 2 2 2 0 AAA domain AAA PF00004.29 gi|305663892|ref|YP_003860180.1| - 1.9e-18 67.1 0.0 5.6e-18 65.6 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.13 gi|305663892|ref|YP_003860180.1| - 3.3e-11 43.3 2.1 1.1e-08 35.0 0.1 2.7 3 0 0 3 3 3 1 DNA polymerase III, delta subunit Rad17 PF03215.15 gi|305663892|ref|YP_003860180.1| - 9.5e-10 38.7 0.1 3.8e-09 36.7 0.1 2.0 1 1 0 1 1 1 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|305663892|ref|YP_003860180.1| - 4.5e-08 33.0 0.0 1.1e-07 31.8 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|305663892|ref|YP_003860180.1| - 3.2e-07 30.4 0.5 7.1e-07 29.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.6 gi|305663892|ref|YP_003860180.1| - 7.9e-07 29.4 0.0 0.0011 19.2 0.0 3.0 2 1 1 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|305663892|ref|YP_003860180.1| - 2.1e-06 27.8 0.0 6.5e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_assoc_2 PF16193.5 gi|305663892|ref|YP_003860180.1| - 2.1e-06 27.9 1.2 0.0015 18.8 0.3 3.6 4 1 0 4 4 3 1 AAA C-terminal domain AAA_16 PF13191.6 gi|305663892|ref|YP_003860180.1| - 2.7e-06 27.9 0.0 7.4e-06 26.4 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain TniB PF05621.11 gi|305663892|ref|YP_003860180.1| - 1e-05 25.0 0.0 0.0047 16.4 0.0 2.4 1 1 1 2 2 2 1 Bacterial TniB protein NB-ARC PF00931.22 gi|305663892|ref|YP_003860180.1| - 1.5e-05 24.4 0.0 5.4e-05 22.5 0.0 2.0 2 1 0 2 2 2 1 NB-ARC domain DUF815 PF05673.13 gi|305663892|ref|YP_003860180.1| - 2.8e-05 23.4 0.0 6.1e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|305663892|ref|YP_003860180.1| - 7.8e-05 22.6 0.0 0.00023 21.1 0.0 1.7 1 1 0 1 1 1 1 Bacterial dnaA protein NACHT PF05729.12 gi|305663892|ref|YP_003860180.1| - 0.00011 22.2 0.0 0.056 13.3 0.0 2.7 1 1 0 1 1 1 1 NACHT domain AAA_2 PF07724.14 gi|305663892|ref|YP_003860180.1| - 0.00012 22.2 0.0 0.00034 20.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) ATPase_2 PF01637.18 gi|305663892|ref|YP_003860180.1| - 0.00021 21.3 0.0 0.00056 19.9 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|305663892|ref|YP_003860180.1| - 0.00033 20.4 0.0 0.0012 18.6 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|305663892|ref|YP_003860180.1| - 0.00043 20.6 0.0 0.0013 19.1 0.0 1.9 1 0 0 1 1 1 1 RNA helicase TIP49 PF06068.13 gi|305663892|ref|YP_003860180.1| - 0.00066 19.0 0.1 0.0011 18.3 0.1 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain Zeta_toxin PF06414.12 gi|305663892|ref|YP_003860180.1| - 0.0021 17.4 0.0 0.0041 16.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Parvo_NS1 PF01057.17 gi|305663892|ref|YP_003860180.1| - 0.0024 17.0 0.0 0.0065 15.6 0.0 1.7 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 NTPase_1 PF03266.15 gi|305663892|ref|YP_003860180.1| - 0.0029 17.5 0.3 1.9 8.4 0.0 2.3 1 1 1 2 2 2 1 NTPase FtsL PF04999.13 gi|305663892|ref|YP_003860180.1| - 0.0037 17.2 0.5 0.23 11.5 0.1 2.5 2 0 0 2 2 2 1 Cell division protein FtsL AAA_7 PF12775.7 gi|305663892|ref|YP_003860180.1| - 0.0039 16.7 0.0 0.0088 15.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_17 PF13207.6 gi|305663892|ref|YP_003860180.1| - 0.0048 17.3 0.2 0.02 15.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|305663892|ref|YP_003860180.1| - 0.0052 17.3 0.0 0.034 14.6 0.0 2.2 2 1 0 2 2 1 1 ABC transporter AAA_28 PF13521.6 gi|305663892|ref|YP_003860180.1| - 0.0098 16.1 0.0 0.023 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|305663892|ref|YP_003860180.1| - 0.0099 15.8 0.0 0.087 12.7 0.0 2.3 1 1 0 2 2 2 1 RsgA GTPase AAA_33 PF13671.6 gi|305663892|ref|YP_003860180.1| - 0.011 16.0 0.0 0.026 14.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain Plug_translocon PF10559.9 gi|305663892|ref|YP_003860180.1| - 0.011 15.6 0.0 2.4 8.1 0.0 2.8 2 0 0 2 2 2 0 Plug domain of Sec61p AAA_18 PF13238.6 gi|305663892|ref|YP_003860180.1| - 0.013 16.1 0.0 0.048 14.2 0.0 2.1 2 0 0 2 2 1 0 AAA domain RFC1 PF08519.12 gi|305663892|ref|YP_003860180.1| - 0.015 15.5 0.0 0.033 14.4 0.0 1.6 1 0 0 1 1 1 0 Replication factor RFC1 C terminal domain MMR_HSR1 PF01926.23 gi|305663892|ref|YP_003860180.1| - 0.017 15.2 0.0 0.061 13.4 0.0 2.0 1 0 0 1 1 1 0 50S ribosome-binding GTPase TsaE PF02367.17 gi|305663892|ref|YP_003860180.1| - 0.018 15.1 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Viral_helicase1 PF01443.18 gi|305663892|ref|YP_003860180.1| - 0.021 14.6 0.0 0.044 13.5 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|305663892|ref|YP_003860180.1| - 0.025 14.9 0.0 0.13 12.6 0.0 2.1 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|305663892|ref|YP_003860180.1| - 0.03 13.9 0.0 0.076 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|305663892|ref|YP_003860180.1| - 0.043 13.6 0.5 0.17 11.6 0.0 2.1 2 1 1 3 3 2 0 AAA domain Mg_chelatase PF01078.21 gi|305663892|ref|YP_003860180.1| - 0.049 13.0 0.0 0.091 12.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI UNC45-central PF11701.8 gi|305663892|ref|YP_003860180.1| - 0.055 13.4 0.0 0.2 11.6 0.0 2.0 1 0 0 1 1 1 0 Myosin-binding striated muscle assembly central T2SSE PF00437.20 gi|305663892|ref|YP_003860180.1| - 0.064 12.3 0.0 0.22 10.6 0.0 1.8 3 0 0 3 3 2 0 Type II/IV secretion system protein DUF1361 PF07099.11 gi|305663892|ref|YP_003860180.1| - 0.092 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1361) PduV-EutP PF10662.9 gi|305663892|ref|YP_003860180.1| - 0.12 12.2 0.0 0.55 10.0 0.0 2.0 1 1 1 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 gi|305663892|ref|YP_003860180.1| - 0.14 11.9 0.0 0.32 10.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain KAP_NTPase PF07693.14 gi|305663892|ref|YP_003860180.1| - 0.17 11.1 2.2 0.96 8.6 0.0 2.7 3 1 1 4 4 3 0 KAP family P-loop domain Halo_GVPC PF05465.13 gi|305663892|ref|YP_003860180.1| - 2 8.8 4.8 40 4.6 0.1 3.6 3 0 0 3 3 3 0 Halobacterial gas vesicle protein C (GVPC) repeat PEPcase_2 PF14010.6 gi|305663893|ref|YP_003860181.1| - 0.011 14.2 0.6 0.012 14.1 0.6 1.0 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase PuR_N PF09182.10 gi|305663893|ref|YP_003860181.1| - 0.053 13.4 0.1 0.09 12.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_45 PF14947.6 gi|305663893|ref|YP_003860181.1| - 0.072 13.1 3.7 0.08 12.9 1.6 1.8 1 1 1 2 2 2 0 Winged helix-turn-helix Cdc6_C PF09079.11 gi|305663894|ref|YP_003860182.1| - 6.7e-21 74.1 0.1 2.3e-20 72.4 0.1 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|305663894|ref|YP_003860182.1| - 6.6e-11 42.6 0.1 4.4e-10 40.0 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|305663894|ref|YP_003860182.1| - 3.6e-05 24.2 0.5 0.0084 16.5 0.1 3.0 2 1 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|305663894|ref|YP_003860182.1| - 6.5e-05 22.4 0.0 0.0002 20.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial TniB protein AAA PF00004.29 gi|305663894|ref|YP_003860182.1| - 0.00042 20.7 0.0 0.0012 19.3 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|305663894|ref|YP_003860182.1| - 0.0042 16.3 0.0 0.015 14.5 0.0 1.9 2 1 0 2 2 2 1 NB-ARC domain NACHT PF05729.12 gi|305663894|ref|YP_003860182.1| - 0.043 13.7 0.0 0.083 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Trigger_C PF05698.14 gi|305663894|ref|YP_003860182.1| - 0.11 12.5 0.4 0.21 11.6 0.4 1.4 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) C-terminus TsaE PF02367.17 gi|305663894|ref|YP_003860182.1| - 0.12 12.3 0.1 5.9 6.9 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Proteasome PF00227.26 gi|305663895|ref|YP_003860183.1| - 4e-53 179.8 0.0 5.8e-53 179.2 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|305663895|ref|YP_003860183.1| - 1.5e-13 50.2 1.1 3.1e-13 49.1 0.2 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.18 gi|305663896|ref|YP_003860184.1| - 2.6e-23 81.9 0.1 4.9e-23 81.0 0.1 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|305663896|ref|YP_003860184.1| - 4e-20 72.0 2.3 6.8e-20 71.2 2.3 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|305663896|ref|YP_003860184.1| - 0.0049 16.9 0.0 0.0099 15.9 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus DUF4238 PF14022.6 gi|305663896|ref|YP_003860184.1| - 0.05 13.1 0.0 0.074 12.6 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4238) KH_6 PF15985.5 gi|305663897|ref|YP_003860185.1| - 1.4e-05 25.4 0.5 3.5e-05 24.0 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|305663897|ref|YP_003860185.1| - 0.0044 16.8 0.2 0.011 15.6 0.2 1.6 1 0 0 1 1 1 1 KH domain EXOSC1 PF10447.9 gi|305663897|ref|YP_003860185.1| - 0.11 13.1 0.9 2.8 8.6 0.0 2.7 2 1 0 2 2 2 0 Exosome component EXOSC1/CSL4 RNase_PH PF01138.21 gi|305663898|ref|YP_003860186.1| - 1.4e-35 122.6 0.1 1.9e-35 122.3 0.1 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|305663898|ref|YP_003860186.1| - 3.1e-14 52.8 0.3 5.4e-14 52.0 0.3 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 EF-hand_6 PF13405.6 gi|305663898|ref|YP_003860186.1| - 0.19 11.8 0.1 1.6 8.8 0.0 2.3 2 0 0 2 2 2 0 EF-hand domain RNase_PH PF01138.21 gi|305663899|ref|YP_003860187.1| - 5.3e-29 101.4 0.0 8.2e-29 100.8 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|305663899|ref|YP_003860187.1| - 2.4e-13 49.9 1.6 2.7e-13 49.7 0.6 1.6 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|305663900|ref|YP_003860188.1| - 7.3e-29 99.7 6.3 7.8e-29 99.6 6.3 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|305663900|ref|YP_003860188.1| - 0.0011 18.8 3.0 0.0018 18.2 2.8 1.5 1 1 0 1 1 1 1 Transposase zinc-ribbon domain CpXC PF14353.6 gi|305663900|ref|YP_003860188.1| - 0.0024 17.9 1.6 0.027 14.5 0.0 2.0 1 1 1 2 2 2 1 CpXC protein zf-3CxxC_2 PF17180.4 gi|305663900|ref|YP_003860188.1| - 0.0049 17.6 3.7 0.27 12.0 0.7 2.3 2 0 0 2 2 2 1 Zinc-binding domain zf-ribbon_3 PF13248.6 gi|305663900|ref|YP_003860188.1| - 0.0052 16.1 3.5 0.16 11.4 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|305663900|ref|YP_003860188.1| - 0.008 16.6 1.1 1.1 9.8 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain zf-HIT PF04438.16 gi|305663900|ref|YP_003860188.1| - 0.0083 16.0 4.2 1.5 8.8 0.0 2.3 2 0 0 2 2 2 2 HIT zinc finger TF_Zn_Ribbon PF08271.12 gi|305663900|ref|YP_003860188.1| - 0.01 15.3 3.1 0.12 11.9 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|305663900|ref|YP_003860188.1| - 0.018 14.7 2.8 2.6 7.9 0.2 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-Di19 PF05605.12 gi|305663900|ref|YP_003860188.1| - 0.022 15.0 0.5 0.13 12.6 0.1 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF4379 PF14311.6 gi|305663900|ref|YP_003860188.1| - 0.027 14.8 6.3 1.4 9.3 1.0 2.2 2 0 0 2 2 2 0 Probable Zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|305663900|ref|YP_003860188.1| - 0.028 14.1 0.7 0.047 13.4 0.7 1.4 1 1 0 1 1 1 0 Ribosomal protein S27 DUF1610 PF07754.11 gi|305663900|ref|YP_003860188.1| - 0.036 14.0 2.9 0.28 11.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-tcix PF14952.6 gi|305663900|ref|YP_003860188.1| - 0.038 13.6 3.7 0.087 12.5 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ISL3 PF14690.6 gi|305663900|ref|YP_003860188.1| - 0.044 14.4 1.4 0.96 10.2 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.19 gi|305663900|ref|YP_003860188.1| - 0.048 13.4 3.6 1.1 9.1 0.0 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf_C2H2_10 PF18414.1 gi|305663900|ref|YP_003860188.1| - 0.059 12.9 2.1 1.6 8.4 0.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger OrfB_Zn_ribbon PF07282.11 gi|305663900|ref|YP_003860188.1| - 0.063 13.2 0.2 0.088 12.7 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|305663900|ref|YP_003860188.1| - 0.063 13.3 0.9 0.12 12.4 0.9 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-ACC PF17848.1 gi|305663900|ref|YP_003860188.1| - 0.064 13.3 2.8 1.1 9.3 0.4 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HypA PF01155.19 gi|305663900|ref|YP_003860188.1| - 0.068 13.2 0.1 0.08 13.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|305663900|ref|YP_003860188.1| - 0.082 12.8 1.9 1.5 8.8 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Unstab_antitox PF09720.10 gi|305663900|ref|YP_003860188.1| - 0.11 12.5 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Putative addiction module component zf_UBZ PF18439.1 gi|305663900|ref|YP_003860188.1| - 0.24 11.0 1.1 15 5.2 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|305663900|ref|YP_003860188.1| - 0.25 11.1 4.1 1.4 8.7 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain A2L_zn_ribbon PF08792.10 gi|305663900|ref|YP_003860188.1| - 0.39 10.5 3.2 2.6 7.9 3.2 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-C2H2_4 PF13894.6 gi|305663900|ref|YP_003860188.1| - 0.68 10.9 3.0 18 6.5 0.6 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.6 gi|305663900|ref|YP_003860188.1| - 0.76 9.6 7.6 2 8.3 0.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|305663900|ref|YP_003860188.1| - 1.2 9.1 6.8 7.1 6.6 6.5 2.0 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Acetone_carb_G PF08882.11 gi|305663900|ref|YP_003860188.1| - 1.4 9.1 5.3 3.8 7.7 1.0 2.2 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-C2H2 PF00096.26 gi|305663900|ref|YP_003860188.1| - 1.5 9.4 4.5 4 8.1 0.4 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Pcc1 PF09341.10 gi|305663902|ref|YP_003860190.1| - 7e-05 22.9 0.0 8.3e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 Transcription factor Pcc1 Flg_hook PF02120.16 gi|305663902|ref|YP_003860190.1| - 0.15 11.9 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Flagellar hook-length control protein FliK Prefoldin_2 PF01920.20 gi|305663903|ref|YP_003860191.1| - 1.6e-23 82.6 12.8 1.8e-23 82.5 12.8 1.0 1 0 0 1 1 1 1 Prefoldin subunit CinA_KH PF18146.1 gi|305663903|ref|YP_003860191.1| - 0.016 15.3 0.2 0.33 11.1 0.0 2.3 2 1 0 2 2 2 0 Damage-inducible protein CinA KH domain ALIX_LYPXL_bnd PF13949.6 gi|305663903|ref|YP_003860191.1| - 0.018 14.3 7.7 0.023 14.0 7.7 1.1 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV CENP-F_leu_zip PF10473.9 gi|305663903|ref|YP_003860191.1| - 0.024 14.7 10.4 0.026 14.5 0.8 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TPR_17 PF13431.6 gi|305663903|ref|YP_003860191.1| - 0.037 14.4 0.1 3.3 8.3 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat BLOC1S3 PF15753.5 gi|305663903|ref|YP_003860191.1| - 0.11 12.6 8.0 0.072 13.2 1.1 2.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex 1 subunit 3 CCDC144C PF14915.6 gi|305663903|ref|YP_003860191.1| - 0.29 10.2 15.1 3.5 6.7 15.1 1.9 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region LMBR1 PF04791.16 gi|305663903|ref|YP_003860191.1| - 0.88 8.4 3.9 1 8.2 3.9 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein Gon7 PF08738.10 gi|305663903|ref|YP_003860191.1| - 0.94 9.6 6.3 0.83 9.8 1.0 2.5 2 1 0 2 2 2 0 Gon7 family NYD-SP28_assoc PF14775.6 gi|305663903|ref|YP_003860191.1| - 2.4 8.4 10.5 1.3 9.2 4.5 2.2 2 0 0 2 2 2 0 Sperm tail C-terminal domain DHH PF01368.20 gi|305663905|ref|YP_003860193.1| - 2.3e-15 56.7 1.6 4.6e-15 55.7 1.6 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|305663905|ref|YP_003860193.1| - 1.2e-06 29.0 0.2 3.8e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 DHHA1 domain HTH_19 PF12844.7 gi|305663905|ref|YP_003860193.1| - 0.0084 16.1 0.0 5.9 7.0 0.0 3.4 3 0 0 3 3 3 2 Helix-turn-helix domain ERCC4 PF02732.15 gi|305663906|ref|YP_003860194.1| - 1.4e-24 87.1 0.1 2.3e-24 86.4 0.1 1.4 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|305663906|ref|YP_003860194.1| - 6.8e-10 39.4 0.1 4.6e-08 33.6 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|305663906|ref|YP_003860194.1| - 2.5e-06 27.5 0.0 8.4e-06 25.8 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|305663906|ref|YP_003860194.1| - 1.8e-05 24.3 0.1 0.0014 18.4 0.0 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|305663906|ref|YP_003860194.1| - 0.00047 20.3 0.1 0.037 14.3 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif PND PF17949.1 gi|305663906|ref|YP_003860194.1| - 0.015 15.6 0.3 0.057 13.7 0.2 2.2 1 1 1 2 2 2 0 FANCM pseudonuclease domain 5_3_exonuc PF01367.20 gi|305663906|ref|YP_003860194.1| - 0.079 13.6 0.6 5.7 7.6 0.0 2.9 2 2 1 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold COQ7 PF03232.13 gi|305663906|ref|YP_003860194.1| - 0.1 12.4 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 Transposase_20 PF02371.16 gi|305663906|ref|YP_003860194.1| - 0.11 12.9 0.0 2 8.8 0.0 2.8 2 1 1 3 3 3 0 Transposase IS116/IS110/IS902 family GTP_EFTU PF00009.27 gi|305663907|ref|YP_003860195.1| - 7.1e-62 208.4 0.2 9.9e-62 207.9 0.2 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|305663907|ref|YP_003860195.1| - 5.3e-30 103.7 0.0 5.4e-29 100.4 0.0 2.6 1 1 1 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|305663907|ref|YP_003860195.1| - 1.1e-24 86.3 0.4 2.4e-24 85.2 0.4 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|305663907|ref|YP_003860195.1| - 5.9e-22 77.5 0.0 2.1e-21 75.7 0.0 2.1 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|305663907|ref|YP_003860195.1| - 1e-11 45.1 0.0 2.9e-11 43.6 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|305663907|ref|YP_003860195.1| - 0.00057 19.9 0.1 0.0013 18.8 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|305663907|ref|YP_003860195.1| - 0.17 11.7 0.0 0.39 10.5 0.0 1.7 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain HypD PF01924.16 gi|305663908|ref|YP_003860196.1| - 1.4e-122 409.2 0.0 1.5e-122 409.0 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family YpsA PF06908.11 gi|305663908|ref|YP_003860196.1| - 0.2 11.6 0.0 0.36 10.8 0.0 1.3 1 0 0 1 1 1 0 YspA SLOG family ADK PF00406.22 gi|305663909|ref|YP_003860197.1| - 1.2e-50 171.6 0.0 1.5e-50 171.2 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|305663909|ref|YP_003860197.1| - 1.9e-24 86.6 0.0 3.9e-24 85.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|305663909|ref|YP_003860197.1| - 8.3e-17 60.9 1.6 1.3e-16 60.2 1.6 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid Hydin_ADK PF17213.3 gi|305663909|ref|YP_003860197.1| - 7.5e-06 26.4 0.1 0.011 16.1 0.1 2.4 2 0 0 2 2 2 2 Hydin Adenylate kinase-like domain AAA_33 PF13671.6 gi|305663909|ref|YP_003860197.1| - 2.5e-05 24.5 0.0 0.0001 22.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|305663909|ref|YP_003860197.1| - 0.00027 21.5 0.0 0.00054 20.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain A2L_zn_ribbon PF08792.10 gi|305663909|ref|YP_003860197.1| - 0.00034 20.2 0.6 0.34 10.7 0.0 2.7 3 0 0 3 3 2 2 A2L zinc ribbon domain AAA_28 PF13521.6 gi|305663909|ref|YP_003860197.1| - 0.001 19.3 0.0 0.0017 18.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zn_ribbon_recom PF13408.6 gi|305663909|ref|YP_003860197.1| - 0.0016 18.9 0.7 0.39 11.3 0.1 2.5 1 1 1 2 2 2 1 Recombinase zinc beta ribbon domain Cytidylate_kin PF02224.18 gi|305663909|ref|YP_003860197.1| - 0.0036 17.1 0.0 0.0056 16.4 0.0 1.4 1 0 0 1 1 1 1 Cytidylate kinase zf-RRN7 PF11781.8 gi|305663909|ref|YP_003860197.1| - 0.0055 16.4 1.9 0.67 9.7 0.2 2.3 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Trm112p PF03966.16 gi|305663909|ref|YP_003860197.1| - 0.0058 17.2 0.0 0.013 16.0 0.0 1.6 1 0 0 1 1 1 1 Trm112p-like protein AAA PF00004.29 gi|305663909|ref|YP_003860197.1| - 0.011 16.1 0.1 0.035 14.5 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|305663909|ref|YP_003860197.1| - 0.019 14.7 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Nudix_N_2 PF14803.6 gi|305663909|ref|YP_003860197.1| - 0.019 14.9 1.3 0.95 9.4 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal Prok-RING_1 PF14446.6 gi|305663909|ref|YP_003860197.1| - 0.021 14.7 0.6 0.73 9.8 0.0 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|305663909|ref|YP_003860197.1| - 0.024 14.1 1.5 1.2 8.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|305663909|ref|YP_003860197.1| - 0.025 14.1 0.2 0.067 12.7 0.2 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|305663909|ref|YP_003860197.1| - 0.052 13.6 0.0 0.092 12.8 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|305663909|ref|YP_003860197.1| - 0.053 13.6 0.1 0.15 12.2 0.1 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|305663909|ref|YP_003860197.1| - 0.065 13.0 0.6 4.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn_ribbon_SprT PF17283.2 gi|305663909|ref|YP_003860197.1| - 0.069 13.1 0.6 0.14 12.1 0.6 1.4 1 0 0 1 1 1 0 SprT-like zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|305663909|ref|YP_003860197.1| - 0.14 12.2 5.2 0.26 11.4 0.5 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|305663909|ref|YP_003860197.1| - 0.16 11.9 0.2 0.58 10.1 0.2 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.12 gi|305663909|ref|YP_003860197.1| - 0.48 10.7 2.8 1.3 9.3 2.8 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase PhnA_Zn_Ribbon PF08274.12 gi|305663909|ref|YP_003860197.1| - 0.52 10.3 2.3 3.6 7.6 2.4 2.2 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-IS66 PF13005.7 gi|305663909|ref|YP_003860197.1| - 1.7 9.1 7.0 28 5.2 0.4 3.5 3 1 0 3 3 3 0 zinc-finger binding domain of transposase IS66 ATPase PF06745.13 gi|305663910|ref|YP_003860198.1| - 6.5e-47 159.8 0.5 6.7e-45 153.2 0.5 2.1 1 1 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|305663910|ref|YP_003860198.1| - 1e-10 41.3 0.0 2.6e-10 40.0 0.0 1.6 2 0 0 2 2 2 1 Rad51 RecA PF00154.21 gi|305663910|ref|YP_003860198.1| - 6.6e-06 25.8 0.0 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.17 gi|305663910|ref|YP_003860198.1| - 1.9e-05 24.5 0.0 4.8e-05 23.2 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|305663910|ref|YP_003860198.1| - 1.9e-05 24.3 0.2 6.1e-05 22.7 0.2 2.1 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|305663910|ref|YP_003860198.1| - 3.2e-05 23.4 0.1 0.0036 16.7 0.0 2.8 2 1 1 3 3 3 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|305663910|ref|YP_003860198.1| - 3.5e-05 22.6 0.0 0.0053 15.4 0.0 2.6 1 1 1 2 2 2 1 GvpD gas vesicle protein PAXNEB PF05625.11 gi|305663910|ref|YP_003860198.1| - 0.00044 19.5 0.0 0.0031 16.7 0.0 1.9 1 1 1 2 2 2 1 PAXNEB protein AAA_24 PF13479.6 gi|305663910|ref|YP_003860198.1| - 0.00082 19.1 0.1 0.043 13.5 0.0 2.7 1 1 1 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|305663910|ref|YP_003860198.1| - 0.0039 16.5 0.0 0.0071 15.6 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|305663910|ref|YP_003860198.1| - 0.0044 17.4 0.0 0.0071 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|305663910|ref|YP_003860198.1| - 0.0044 16.7 0.0 0.0074 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.7 gi|305663910|ref|YP_003860198.1| - 0.0075 15.2 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain ABC_tran PF00005.27 gi|305663910|ref|YP_003860198.1| - 0.0084 16.6 0.0 0.012 16.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Sigma54_activat PF00158.26 gi|305663910|ref|YP_003860198.1| - 0.011 15.4 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.6 gi|305663910|ref|YP_003860198.1| - 0.021 15.1 0.0 0.058 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|305663910|ref|YP_003860198.1| - 0.033 13.0 0.0 0.073 11.9 0.0 1.5 2 0 0 2 2 2 0 Papillomavirus helicase AAA_5 PF07728.14 gi|305663910|ref|YP_003860198.1| - 0.057 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DAP3 PF10236.9 gi|305663910|ref|YP_003860198.1| - 0.057 12.6 0.0 0.13 11.4 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_18 PF13238.6 gi|305663910|ref|YP_003860198.1| - 0.074 13.6 0.0 0.44 11.1 0.0 2.2 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|305663910|ref|YP_003860198.1| - 0.076 13.4 0.0 0.4 11.1 0.0 2.2 2 0 0 2 2 2 0 RNA helicase MMR_HSR1 PF01926.23 gi|305663910|ref|YP_003860198.1| - 0.079 13.0 0.0 0.25 11.5 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|305663910|ref|YP_003860198.1| - 0.1 12.5 0.0 0.38 10.6 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 gi|305663910|ref|YP_003860198.1| - 0.1 12.8 0.0 0.24 11.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|305663910|ref|YP_003860198.1| - 0.13 12.7 0.1 0.38 11.2 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|305663910|ref|YP_003860198.1| - 0.22 10.5 0.5 0.83 8.6 0.1 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF2070 PF09843.9 gi|305663913|ref|YP_003860201.1| - 8.7e-81 271.9 14.0 1.8e-80 270.9 13.9 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2070) CdvA PF18822.1 gi|305663914|ref|YP_003860202.1| - 1.5e-31 108.8 8.7 2.3e-31 108.2 8.7 1.2 1 0 0 1 1 1 1 CdvA-like coiled-coil domain PRC PF05239.16 gi|305663914|ref|YP_003860202.1| - 0.0009 19.3 0.6 0.0018 18.3 0.6 1.5 1 0 0 1 1 1 1 PRC-barrel domain DUF4763 PF15960.5 gi|305663914|ref|YP_003860202.1| - 0.0088 15.4 1.2 0.0088 15.4 1.2 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4763) FH2 PF02181.23 gi|305663914|ref|YP_003860202.1| - 0.009 15.2 0.9 0.009 15.2 0.9 1.8 2 0 0 2 2 2 1 Formin Homology 2 Domain DUF1678 PF07913.11 gi|305663914|ref|YP_003860202.1| - 0.087 12.6 0.3 0.17 11.7 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1678) Syntaxin-6_N PF09177.11 gi|305663914|ref|YP_003860202.1| - 0.099 13.2 3.9 0.69 10.5 3.9 2.2 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Peptidase_C14 PF00656.22 gi|305663914|ref|YP_003860202.1| - 0.17 11.8 0.2 0.31 11.0 0.2 1.5 1 1 0 1 1 1 0 Caspase domain DUF883 PF05957.13 gi|305663914|ref|YP_003860202.1| - 0.47 11.1 3.7 0.22 12.2 0.7 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Bcr-Abl_Oligo PF09036.10 gi|305663914|ref|YP_003860202.1| - 2.4 8.2 5.8 1.9 8.5 0.4 2.8 2 1 1 3 3 3 0 Bcr-Abl oncoprotein oligomerisation domain Fib_alpha PF08702.10 gi|305663914|ref|YP_003860202.1| - 2.8 8.1 5.5 1.4 9.1 0.7 2.4 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family Bap31_Bap29_C PF18035.1 gi|305663914|ref|YP_003860202.1| - 4 7.5 8.2 5.3 7.1 5.1 2.4 2 0 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain MerR-DNA-bind PF09278.11 gi|305663914|ref|YP_003860202.1| - 6.5 7.4 8.6 5.2 7.7 0.4 2.7 3 0 0 3 3 3 0 MerR, DNA binding TrmB PF01978.19 gi|305663915|ref|YP_003860203.1| - 6.2e-05 22.8 0.0 0.00023 21.0 0.0 2.0 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DDRGK PF09756.9 gi|305663915|ref|YP_003860203.1| - 0.00082 19.0 7.4 0.028 14.0 0.0 3.2 2 1 1 3 3 3 2 DDRGK domain HTH_24 PF13412.6 gi|305663915|ref|YP_003860203.1| - 0.0012 18.4 0.1 0.0061 16.1 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|305663915|ref|YP_003860203.1| - 0.015 15.1 0.0 0.053 13.3 0.0 2.0 1 0 0 1 1 1 0 LexA DNA binding domain MarR PF01047.22 gi|305663915|ref|YP_003860203.1| - 0.019 14.9 0.0 0.069 13.1 0.0 2.1 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|305663915|ref|YP_003860203.1| - 0.068 13.5 0.4 0.5 10.7 0.0 2.7 3 1 1 4 4 4 0 Transcriptional regulator GntR PF00392.21 gi|305663915|ref|YP_003860203.1| - 0.081 12.6 0.0 0.24 11.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|305663915|ref|YP_003860203.1| - 0.089 12.6 0.0 0.44 10.4 0.0 2.2 1 0 0 1 1 1 0 HTH DNA binding domain MarR_2 PF12802.7 gi|305663915|ref|YP_003860203.1| - 0.13 12.1 0.0 1.8 8.5 0.0 2.7 2 1 1 3 3 3 0 MarR family Enkurin PF13864.6 gi|305663915|ref|YP_003860203.1| - 0.21 12.0 3.6 0.19 12.2 0.7 2.2 2 0 0 2 2 2 0 Calmodulin-binding CAMSAP_CC1 PF17095.5 gi|305663915|ref|YP_003860203.1| - 0.24 11.3 3.1 0.86 9.5 0.1 2.9 3 0 0 3 3 3 0 Spectrin-binding region of Ca2+-Calmodulin BSP PF04450.12 gi|305663915|ref|YP_003860203.1| - 0.5 10.1 2.8 1.4 8.7 1.4 2.2 2 1 0 2 2 2 0 Peptidase of plants and bacteria RTT107_BRCT_6 PF16771.5 gi|305663915|ref|YP_003860203.1| - 3.9 7.7 6.4 1.3 9.2 0.9 2.6 3 0 0 3 3 3 0 Regulator of Ty1 transposition protein 107 BRCT domain AAA PF00004.29 gi|305663916|ref|YP_003860204.1| - 1.1e-35 123.0 0.0 4.4e-35 121.0 0.0 2.0 3 0 0 3 3 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|305663916|ref|YP_003860204.1| - 1.1e-10 41.1 0.0 2.6e-10 39.9 0.0 1.7 1 0 0 1 1 1 1 AAA+ lid domain Vps4_C PF09336.10 gi|305663916|ref|YP_003860204.1| - 3.2e-07 30.2 0.0 8.8e-07 28.8 0.0 1.7 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain AAA_16 PF13191.6 gi|305663916|ref|YP_003860204.1| - 1.2e-05 25.8 0.0 0.00021 21.7 0.0 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|305663916|ref|YP_003860204.1| - 3.2e-05 24.2 0.0 0.0038 17.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain MIT PF04212.18 gi|305663916|ref|YP_003860204.1| - 4.4e-05 23.5 5.9 7.4e-05 22.7 4.4 2.2 2 0 0 2 2 2 1 MIT (microtubule interacting and transport) domain TIP49 PF06068.13 gi|305663916|ref|YP_003860204.1| - 4.7e-05 22.8 0.0 0.00011 21.6 0.0 1.6 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_2 PF07724.14 gi|305663916|ref|YP_003860204.1| - 6.4e-05 23.1 0.1 0.00018 21.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|305663916|ref|YP_003860204.1| - 6.6e-05 22.7 0.0 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|305663916|ref|YP_003860204.1| - 0.00055 20.0 0.5 0.0033 17.5 0.0 2.5 3 1 0 3 3 3 1 AAA domain ATPase_2 PF01637.18 gi|305663916|ref|YP_003860204.1| - 0.00065 19.7 1.8 0.38 10.6 0.0 3.2 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|305663916|ref|YP_003860204.1| - 0.0018 18.7 0.0 0.0082 16.5 0.0 2.2 2 0 0 2 2 1 1 RNA helicase AAA_25 PF13481.6 gi|305663916|ref|YP_003860204.1| - 0.0018 17.9 0.0 0.046 13.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|305663916|ref|YP_003860204.1| - 0.0022 17.4 0.0 0.0043 16.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|305663916|ref|YP_003860204.1| - 0.0028 17.7 0.1 0.012 15.6 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|305663916|ref|YP_003860204.1| - 0.0099 15.8 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.17 gi|305663916|ref|YP_003860204.1| - 0.018 14.8 0.0 0.041 13.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|305663916|ref|YP_003860204.1| - 0.018 15.6 0.1 0.066 13.7 0.0 2.2 2 1 0 2 2 1 0 AAA domain Gp-FAR-1 PF05823.12 gi|305663916|ref|YP_003860204.1| - 0.027 14.8 0.3 27 5.1 0.1 3.2 3 0 0 3 3 3 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) AAA_24 PF13479.6 gi|305663916|ref|YP_003860204.1| - 0.032 14.0 0.0 0.073 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|305663916|ref|YP_003860204.1| - 0.043 14.0 0.0 0.11 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|305663916|ref|YP_003860204.1| - 0.054 12.7 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|305663916|ref|YP_003860204.1| - 0.061 12.6 0.0 0.14 11.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|305663916|ref|YP_003860204.1| - 0.064 13.8 0.0 0.14 12.7 0.0 1.8 1 1 0 1 1 1 0 ABC transporter AAA_28 PF13521.6 gi|305663916|ref|YP_003860204.1| - 0.082 13.2 0.0 0.27 11.4 0.0 1.9 2 1 0 2 2 1 0 AAA domain DUF815 PF05673.13 gi|305663916|ref|YP_003860204.1| - 0.1 11.8 0.0 0.21 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Parvo_NS1 PF01057.17 gi|305663916|ref|YP_003860204.1| - 0.14 11.3 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|305663916|ref|YP_003860204.1| - 0.14 12.6 0.3 0.67 10.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|305663916|ref|YP_003860204.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CPT PF07931.12 gi|305663916|ref|YP_003860204.1| - 0.18 11.7 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein TPR_2 PF07719.17 gi|305663916|ref|YP_003860204.1| - 0.18 12.0 5.8 0.88 9.8 1.3 3.7 4 0 0 4 4 3 0 Tetratricopeptide repeat Viral_helicase1 PF01443.18 gi|305663916|ref|YP_003860204.1| - 0.21 11.3 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase CBS PF00571.28 gi|305663917|ref|YP_003860205.1| - 2.5e-24 85.4 8.5 6.6e-13 48.9 1.1 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|305663917|ref|YP_003860205.1| - 0.074 13.3 1.3 1.5 9.1 0.0 2.5 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain FbpA PF05833.11 gi|305663918|ref|YP_003860206.1| - 7.6e-28 97.5 10.8 1.3e-27 96.8 10.8 1.3 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|305663918|ref|YP_003860206.1| - 6.6e-24 84.7 0.0 1.6e-23 83.4 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|305663918|ref|YP_003860206.1| - 5.1e-05 23.4 0.0 0.00017 21.7 0.0 1.9 1 0 0 1 1 1 1 NFACT protein RNA binding domain CENP-F_leu_zip PF10473.9 gi|305663918|ref|YP_003860206.1| - 0.00097 19.2 9.9 0.23 11.5 0.4 2.3 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 gi|305663918|ref|YP_003860206.1| - 0.0026 16.7 6.8 0.031 13.2 0.1 2.2 2 0 0 2 2 2 1 Spc7 kinetochore protein DUF724 PF05266.14 gi|305663918|ref|YP_003860206.1| - 0.0068 16.3 7.9 0.28 11.0 0.2 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF724) Helo_like_N PF17111.5 gi|305663918|ref|YP_003860206.1| - 0.017 14.5 5.8 0.03 13.7 5.8 1.3 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins Baculo_PEP_C PF04513.12 gi|305663918|ref|YP_003860206.1| - 0.018 15.1 3.5 0.26 11.3 0.0 2.6 3 0 0 3 3 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus LMBR1 PF04791.16 gi|305663918|ref|YP_003860206.1| - 0.041 12.8 0.8 0.076 11.9 0.8 1.4 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF2203 PF09969.9 gi|305663918|ref|YP_003860206.1| - 0.064 14.0 1.7 1.4 9.6 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) Syntaxin-6_N PF09177.11 gi|305663918|ref|YP_003860206.1| - 0.064 13.8 3.3 5.7 7.6 0.4 2.6 2 0 0 2 2 2 0 Syntaxin 6, N-terminal DUF948 PF06103.11 gi|305663918|ref|YP_003860206.1| - 0.069 13.4 2.9 0.7 10.2 0.6 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) VasI PF11319.8 gi|305663918|ref|YP_003860206.1| - 0.1 12.3 0.3 0.31 10.7 0.1 1.9 2 0 0 2 2 2 0 Type VI secretion system VasI, EvfG, VC_A0118 Laminin_II PF06009.12 gi|305663918|ref|YP_003860206.1| - 0.12 12.4 3.9 1.4 8.9 0.1 2.5 2 0 0 2 2 2 0 Laminin Domain II TACC_C PF05010.14 gi|305663918|ref|YP_003860206.1| - 0.24 11.1 12.0 2.2 8.0 3.9 2.2 2 0 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF812 PF05667.11 gi|305663918|ref|YP_003860206.1| - 0.28 10.0 10.0 0.62 8.9 10.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) BLOC1_2 PF10046.9 gi|305663918|ref|YP_003860206.1| - 0.34 11.2 12.8 8.3 6.8 1.2 3.9 3 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Ax_dynein_light PF10211.9 gi|305663918|ref|YP_003860206.1| - 0.37 10.7 7.7 2.3 8.1 1.9 2.4 2 0 0 2 2 2 0 Axonemal dynein light chain Phage_GP20 PF06810.11 gi|305663918|ref|YP_003860206.1| - 0.41 10.4 7.7 0.13 12.1 0.5 2.5 2 0 0 2 2 2 0 Phage minor structural protein GP20 PspA_IM30 PF04012.12 gi|305663918|ref|YP_003860206.1| - 0.44 10.1 7.6 0.97 9.0 0.1 2.1 2 0 0 2 2 2 0 PspA/IM30 family Seryl_tRNA_N PF02403.22 gi|305663918|ref|YP_003860206.1| - 0.47 10.7 9.6 6.1 7.1 3.5 2.7 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Spc24 PF08286.11 gi|305663918|ref|YP_003860206.1| - 0.53 10.6 8.2 2.3 8.5 2.2 2.7 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 UPF0242 PF06785.11 gi|305663918|ref|YP_003860206.1| - 0.73 9.9 12.2 1.1 9.3 3.4 2.6 3 0 0 3 3 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF465 PF04325.13 gi|305663918|ref|YP_003860206.1| - 0.88 9.7 5.8 3.3 7.8 0.6 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF465) AAA_13 PF13166.6 gi|305663918|ref|YP_003860206.1| - 0.95 8.0 11.6 0.19 10.3 0.9 2.1 1 1 1 2 2 2 0 AAA domain COG2 PF06148.11 gi|305663918|ref|YP_003860206.1| - 0.98 9.5 4.0 10 6.2 0.6 2.4 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 LXG PF04740.12 gi|305663918|ref|YP_003860206.1| - 1 9.1 5.8 4.2 7.0 0.1 3.2 3 0 0 3 3 3 0 LXG domain of WXG superfamily YabA PF06156.13 gi|305663918|ref|YP_003860206.1| - 1.5 9.5 7.7 3.5 8.3 1.4 2.6 2 0 0 2 2 2 0 Initiation control protein YabA Phage_HK97_TLTM PF06120.11 gi|305663918|ref|YP_003860206.1| - 1.8 7.7 7.2 5.1 6.2 0.7 2.3 2 0 0 2 2 2 0 Tail length tape measure protein DUF1664 PF07889.12 gi|305663918|ref|YP_003860206.1| - 1.9 8.6 6.2 11 6.0 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF4446 PF14584.6 gi|305663918|ref|YP_003860206.1| - 2.1 8.3 7.9 15 5.6 2.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DivIC PF04977.15 gi|305663918|ref|YP_003860206.1| - 3.3 7.5 11.4 5.3 6.9 4.5 2.6 2 0 0 2 2 2 0 Septum formation initiator Sec8_exocyst PF04048.14 gi|305663918|ref|YP_003860206.1| - 4 7.3 8.2 0.39 10.6 0.6 2.3 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain Prefoldin PF02996.17 gi|305663918|ref|YP_003860206.1| - 4 7.4 10.2 3.2 7.7 0.4 2.9 2 0 0 2 2 2 0 Prefoldin subunit CENP-H PF05837.12 gi|305663918|ref|YP_003860206.1| - 4.2 7.8 7.9 4.1 7.8 2.6 2.3 2 0 0 2 2 2 0 Centromere protein H (CENP-H) HAUS-augmin3 PF14932.6 gi|305663918|ref|YP_003860206.1| - 4.5 6.8 9.6 0.59 9.7 0.6 2.2 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 S6OS1 PF15676.5 gi|305663918|ref|YP_003860206.1| - 5.2 5.4 9.4 3.9 5.8 2.6 2.2 2 0 0 2 2 2 0 Six6 opposite strand transcript 1 family Mod_r PF07200.13 gi|305663918|ref|YP_003860206.1| - 8.1 6.5 12.5 16 5.6 4.5 2.4 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein NuA4 PF09340.10 gi|305663918|ref|YP_003860206.1| - 8.8 6.3 6.2 2.1 8.3 0.4 2.8 2 2 1 3 3 3 0 Histone acetyltransferase subunit NuA4 RNA_Me_trans PF04252.13 gi|305663920|ref|YP_003860208.1| - 8.8e-45 152.7 0.0 1e-44 152.5 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Flavi_DEAD PF07652.14 gi|305663920|ref|YP_003860208.1| - 0.0027 17.7 0.0 0.0061 16.5 0.0 1.5 1 0 0 1 1 1 1 Flavivirus DEAD domain LSM PF01423.22 gi|305663921|ref|YP_003860209.1| - 3.3e-18 65.1 0.3 3.9e-18 64.9 0.3 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|305663921|ref|YP_003860209.1| - 0.029 14.5 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain AdoMet_Synthase PF01941.19 gi|305663923|ref|YP_003860211.1| - 5.1e-172 572.1 6.8 5.7e-172 572.0 6.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|305663923|ref|YP_003860211.1| - 0.44 11.2 2.9 0.94 10.2 0.0 2.8 4 0 0 4 4 4 0 S-adenosylmethionine synthetase, N-terminal domain DUF460 PF04312.13 gi|305663924|ref|YP_003860212.1| - 3.9e-47 159.5 0.2 7.3e-47 158.6 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Hpr_kinase_N PF02603.16 gi|305663924|ref|YP_003860212.1| - 0.00038 20.5 0.2 0.0041 17.1 0.0 2.8 2 0 0 2 2 2 1 HPr Serine kinase N terminus Atg14 PF10186.9 gi|305663924|ref|YP_003860212.1| - 0.0005 19.2 3.9 0.0012 18.0 3.9 1.7 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 Snapin_Pallidin PF14712.6 gi|305663924|ref|YP_003860212.1| - 0.0011 19.4 5.3 0.0011 19.4 5.3 3.9 3 1 1 4 4 4 1 Snapin/Pallidin TSC22 PF01166.18 gi|305663924|ref|YP_003860212.1| - 0.043 14.1 1.2 0.043 14.1 1.2 3.8 3 1 1 4 4 4 0 TSC-22/dip/bun family DRTGG PF07085.12 gi|305663924|ref|YP_003860212.1| - 0.047 13.5 0.0 1.1 9.1 0.0 2.8 2 1 0 2 2 2 0 DRTGG domain MutS_II PF05188.17 gi|305663924|ref|YP_003860212.1| - 0.08 13.2 2.2 0.57 10.5 0.0 2.8 2 1 1 3 3 3 0 MutS domain II PG_binding_1 PF01471.18 gi|305663924|ref|YP_003860212.1| - 0.081 13.2 0.0 0.23 11.7 0.0 1.8 1 0 0 1 1 1 0 Putative peptidoglycan binding domain ATG16 PF08614.11 gi|305663924|ref|YP_003860212.1| - 0.14 12.4 11.6 0.052 13.8 8.0 2.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) bZIP_1 PF00170.21 gi|305663924|ref|YP_003860212.1| - 0.15 12.2 19.0 0.76 9.9 8.6 2.9 2 0 0 2 2 2 0 bZIP transcription factor DUF1465 PF07323.12 gi|305663924|ref|YP_003860212.1| - 0.25 11.2 4.2 0.41 10.5 2.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) Spc7 PF08317.11 gi|305663924|ref|YP_003860212.1| - 0.29 10.0 16.6 0.015 14.2 10.6 1.8 2 0 0 2 2 2 0 Spc7 kinetochore protein HAUS-augmin3 PF14932.6 gi|305663924|ref|YP_003860212.1| - 0.34 10.5 11.2 0.066 12.8 4.9 2.3 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 DUF4140 PF13600.6 gi|305663924|ref|YP_003860212.1| - 0.67 10.4 14.0 17 5.9 1.0 3.5 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF2205 PF10224.9 gi|305663924|ref|YP_003860212.1| - 0.7 9.9 15.9 0.22 11.6 2.0 2.7 1 1 1 2 2 2 0 Short coiled-coil protein ZapB PF06005.12 gi|305663924|ref|YP_003860212.1| - 0.92 10.0 23.8 0.13 12.7 14.7 3.1 2 1 1 3 3 3 0 Cell division protein ZapB Prefoldin PF02996.17 gi|305663924|ref|YP_003860212.1| - 0.95 9.4 12.5 5.5 6.9 2.6 2.9 2 0 0 2 2 2 0 Prefoldin subunit Nas2_N PF18265.1 gi|305663924|ref|YP_003860212.1| - 0.99 9.4 8.0 9.8 6.2 6.4 3.2 2 1 0 2 2 2 0 Nas2 N_terminal domain DUF2730 PF10805.8 gi|305663924|ref|YP_003860212.1| - 1.4 9.0 10.6 0.5 10.5 3.0 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) GIT_CC PF16559.5 gi|305663924|ref|YP_003860212.1| - 1.9 8.4 8.6 3.9 7.4 1.0 2.6 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor Fmp27_WPPW PF10359.9 gi|305663924|ref|YP_003860212.1| - 5.5 5.7 10.0 24 3.6 10.0 1.8 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain CCDC106 PF15794.5 gi|305663924|ref|YP_003860212.1| - 6 6.5 11.4 5.6 6.6 3.0 2.2 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 106 MCC-bdg_PDZ PF10506.9 gi|305663924|ref|YP_003860212.1| - 6.3 6.9 9.5 1.5 8.9 1.1 3.2 3 0 0 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome LOH1CR12 PF10158.9 gi|305663924|ref|YP_003860212.1| - 8.7 6.4 8.8 0.3 11.1 0.2 2.9 4 0 0 4 4 3 0 Tumour suppressor protein DUF2203 PF09969.9 gi|305663924|ref|YP_003860212.1| - 8.9 7.1 8.4 1.3 9.7 3.6 2.1 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) RIO1 PF01163.22 gi|305663925|ref|YP_003860213.1| - 5.9e-34 117.3 0.0 9.7e-34 116.6 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|305663925|ref|YP_003860213.1| - 1.1e-10 41.6 0.9 1.9e-10 40.8 0.9 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|305663925|ref|YP_003860213.1| - 8e-05 22.7 0.1 0.027 14.4 0.0 2.8 2 1 0 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|305663925|ref|YP_003860213.1| - 0.00016 21.1 0.8 0.003 16.9 0.5 2.3 1 1 0 1 1 1 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|305663925|ref|YP_003860213.1| - 0.0017 17.2 0.0 0.0022 16.8 0.0 1.3 1 0 0 1 1 1 1 Fungal protein kinase EcKinase PF02958.20 gi|305663925|ref|YP_003860213.1| - 0.019 14.3 0.0 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 Ecdysteroid kinase tRNA-synt_2c PF01411.19 gi|305663927|ref|YP_003860215.1| - 7e-14 51.2 0.1 1.2e-13 50.4 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|305663927|ref|YP_003860215.1| - 1.5e-09 37.8 0.1 3.4e-09 36.6 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain PepSY PF03413.19 gi|305663927|ref|YP_003860215.1| - 0.89 10.2 4.6 7.4 7.2 0.2 2.9 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain DUF4443 PF14544.6 gi|305663928|ref|YP_003860216.1| - 1.2e-07 31.9 0.3 3.6e-07 30.4 0.1 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4443) DUF4093 PF13331.6 gi|305663928|ref|YP_003860216.1| - 0.0047 17.3 0.1 0.026 15.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4093) TFIIE_alpha PF02002.17 gi|305663928|ref|YP_003860216.1| - 0.1 12.5 2.0 0.16 11.8 0.3 2.2 2 0 0 2 2 2 0 TFIIE alpha subunit HMG-CoA_red PF00368.18 gi|305663929|ref|YP_003860217.1| - 7.1e-112 374.0 6.1 8.3e-112 373.8 6.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF5616 PF18481.1 gi|305663930|ref|YP_003860218.1| - 9.5e-30 103.8 2.1 1.3e-29 103.3 2.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|305663930|ref|YP_003860218.1| - 4.4e-20 71.1 0.8 7.6e-20 70.4 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF434) zf-C2H2 PF00096.26 gi|305663932|ref|YP_003860220.1| - 2e-05 24.8 0.2 3e-05 24.2 0.2 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|305663932|ref|YP_003860220.1| - 0.00031 21.3 0.2 0.00047 20.8 0.2 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger zf-met PF12874.7 gi|305663932|ref|YP_003860220.1| - 0.00034 20.9 0.2 0.00052 20.3 0.2 1.2 1 0 0 1 1 1 1 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 gi|305663932|ref|YP_003860220.1| - 0.0079 16.2 0.1 0.011 15.8 0.1 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger zf_UBZ PF18439.1 gi|305663932|ref|YP_003860220.1| - 0.03 13.9 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|305663932|ref|YP_003860220.1| - 0.072 12.8 0.9 0.13 12.0 0.8 1.5 1 1 0 1 1 1 0 Rubredoxin metal binding domain PAC2 PF09754.9 gi|305663933|ref|YP_003860221.1| - 1.7e-33 116.5 0.0 1.9e-33 116.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family bact-PGI_C PF10432.9 gi|305663934|ref|YP_003860222.1| - 9.1e-35 119.9 0.0 1.4e-34 119.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|305663934|ref|YP_003860222.1| - 1.1e-05 25.3 0.2 0.00058 19.7 0.1 2.6 2 1 0 2 2 2 2 SIS domain Ribosomal_L38e PF01781.18 gi|305663935|ref|YP_003860223.1| - 5.1e-08 32.9 2.2 6.4e-08 32.6 2.2 1.3 1 1 0 1 1 1 1 Ribosomal L38e protein family SfsA PF03749.13 gi|305663937|ref|YP_003860225.1| - 0.068 13.1 0.5 0.23 11.3 0.1 2.0 2 1 0 2 2 2 0 Sugar fermentation stimulation protein RE domain tRNA_deacylase PF04414.12 gi|305663938|ref|YP_003860226.1| - 5.3e-60 202.5 0.0 6.7e-60 202.1 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Beta-Casp PF10996.8 gi|305663939|ref|YP_003860227.1| - 7.5e-15 55.2 0.0 1.3e-14 54.4 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_2 PF12706.7 gi|305663939|ref|YP_003860227.1| - 4.7e-12 45.9 0.0 8.8e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|305663939|ref|YP_003860227.1| - 7.1e-12 45.7 0.0 4.3e-11 43.2 0.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|305663939|ref|YP_003860227.1| - 1.3e-10 41.1 0.1 1.9e-09 37.3 0.0 2.4 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|305663939|ref|YP_003860227.1| - 2e-09 37.2 0.0 9.3e-09 35.1 0.0 2.2 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_3 PF13483.6 gi|305663939|ref|YP_003860227.1| - 0.00015 21.7 0.1 0.00055 19.9 0.0 1.9 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Beta_lactamase3 PF17030.5 gi|305663939|ref|YP_003860227.1| - 0.0065 15.7 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 Putative beta-lactamase-like family NAC PF01849.18 gi|305663940|ref|YP_003860228.1| - 2.2e-10 40.3 0.9 4.5e-10 39.4 0.9 1.5 1 0 0 1 1 1 1 NAC domain HOIP-UBA PF16678.5 gi|305663940|ref|YP_003860228.1| - 4.7e-05 23.4 1.3 8e-05 22.7 1.3 1.7 1 1 0 1 1 1 1 HOIP UBA domain pair UBA PF00627.31 gi|305663940|ref|YP_003860228.1| - 0.041 13.8 0.7 0.7 9.9 0.1 2.4 2 0 0 2 2 2 0 UBA/TS-N domain SpoIIM PF01944.17 gi|305663943|ref|YP_003860231.1| - 2.3e-06 27.7 1.5 2.4e-06 27.6 1.5 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M DUF5389 PF17364.2 gi|305663943|ref|YP_003860231.1| - 0.006 16.6 1.3 0.0067 16.5 1.3 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5389) HTH_11 PF08279.12 gi|305663944|ref|YP_003860232.1| - 4.3e-05 23.4 1.1 9.2e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 HTH domain Fe_dep_repress PF01325.19 gi|305663944|ref|YP_003860232.1| - 0.00024 21.2 0.0 0.00065 19.8 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|305663944|ref|YP_003860232.1| - 0.00025 20.9 0.1 0.00053 19.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|305663944|ref|YP_003860232.1| - 0.00035 20.5 3.5 0.00053 19.9 0.2 2.4 2 1 0 2 2 2 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|305663944|ref|YP_003860232.1| - 0.00087 18.8 0.1 0.00087 18.8 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|305663944|ref|YP_003860232.1| - 0.00089 19.1 0.0 0.002 17.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Ribosomal_S25 PF03297.15 gi|305663944|ref|YP_003860232.1| - 0.0014 18.8 0.1 0.0038 17.4 0.1 1.7 1 0 0 1 1 1 1 S25 ribosomal protein HTH_DeoR PF08220.12 gi|305663944|ref|YP_003860232.1| - 0.0047 16.6 0.1 0.01 15.5 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Phage_integr_3 PF16795.5 gi|305663944|ref|YP_003860232.1| - 0.0061 16.5 0.3 2.1 8.2 0.1 2.3 1 1 0 2 2 2 2 Archaeal phage integrase HTH_36 PF13730.6 gi|305663944|ref|YP_003860232.1| - 0.011 15.7 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|305663944|ref|YP_003860232.1| - 0.023 14.5 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|305663944|ref|YP_003860232.1| - 0.032 13.9 0.1 0.064 12.9 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2250 PF10007.9 gi|305663944|ref|YP_003860232.1| - 0.033 14.3 0.0 0.063 13.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DDE_Tnp_IS66_C PF13817.6 gi|305663944|ref|YP_003860232.1| - 0.052 13.8 0.3 11 6.3 0.0 3.2 3 0 0 3 3 3 0 IS66 C-terminal element HTH_IclR PF09339.10 gi|305663944|ref|YP_003860232.1| - 0.065 13.0 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|305663944|ref|YP_003860232.1| - 0.095 13.1 0.0 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein Sigma70_r4 PF04545.16 gi|305663944|ref|YP_003860232.1| - 0.1 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 SAM_adeno_trans PF01887.16 gi|305663945|ref|YP_003860233.1| - 1.1e-79 267.2 0.0 1.3e-79 267.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Crystall PF00030.19 gi|305663945|ref|YP_003860233.1| - 0.07 13.3 0.1 0.2 11.9 0.0 1.7 2 0 0 2 2 2 0 Beta/Gamma crystallin AhpC-TSA PF00578.21 gi|305663947|ref|YP_003860235.1| - 5e-34 116.9 0.0 9.5e-34 116.0 0.0 1.5 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|305663947|ref|YP_003860235.1| - 7.3e-15 55.0 0.0 1e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|305663947|ref|YP_003860235.1| - 1.8e-08 34.1 0.1 3.5e-08 33.2 0.1 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF4368 PF14287.6 gi|305663947|ref|YP_003860235.1| - 0.11 12.8 0.1 0.32 11.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4368) MqsA_antitoxin PF15731.5 gi|305663947|ref|YP_003860235.1| - 0.13 12.3 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Peptidase_M54 PF07998.11 gi|305663948|ref|YP_003860236.1| - 7.6e-29 101.1 0.2 1.2e-28 100.5 0.2 1.4 1 1 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|305663948|ref|YP_003860236.1| - 0.00078 19.3 0.0 0.0015 18.4 0.0 1.5 1 0 0 1 1 1 1 Matrixin DUF4953 PF16313.5 gi|305663948|ref|YP_003860236.1| - 0.025 13.8 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 Met-zincin Ly-6_related PF06579.12 gi|305663948|ref|YP_003860236.1| - 0.036 14.3 0.1 0.05 13.9 0.1 1.2 1 0 0 1 1 1 0 Caenorhabditis elegans ly-6-related protein Peptidase_M66 PF10462.9 gi|305663948|ref|YP_003860236.1| - 0.036 13.0 0.0 0.046 12.7 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Metallopep PF12044.8 gi|305663948|ref|YP_003860236.1| - 0.071 11.7 0.1 0.095 11.3 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M43 PF05572.13 gi|305663948|ref|YP_003860236.1| - 0.14 12.0 0.1 0.21 11.5 0.1 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A BPD_transp_1 PF00528.22 gi|305663949|ref|YP_003860237.1| - 1.5e-17 64.0 17.2 1.5e-17 64.0 17.2 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|305663950|ref|YP_003860238.1| - 6.8e-37 127.0 0.0 9.6e-37 126.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663950|ref|YP_003860238.1| - 1.2e-15 58.1 0.3 1.7e-07 31.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663950|ref|YP_003860238.1| - 9.9e-11 41.5 0.1 1.7e-10 40.7 0.1 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|305663950|ref|YP_003860238.1| - 1.5e-07 31.5 0.2 3.1e-05 23.8 0.1 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|305663950|ref|YP_003860238.1| - 6.3e-06 25.9 0.0 1.2e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|305663950|ref|YP_003860238.1| - 7.3e-05 21.7 0.8 0.28 9.9 0.2 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|305663950|ref|YP_003860238.1| - 0.00021 21.8 0.4 0.00033 21.2 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305663950|ref|YP_003860238.1| - 0.00065 20.1 0.0 0.00088 19.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|305663950|ref|YP_003860238.1| - 0.0008 19.8 0.2 0.019 15.4 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|305663950|ref|YP_003860238.1| - 0.00098 19.1 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|305663950|ref|YP_003860238.1| - 0.0011 19.3 0.1 0.0082 16.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|305663950|ref|YP_003860238.1| - 0.002 18.1 0.5 0.038 13.9 0.5 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_13 PF13166.6 gi|305663950|ref|YP_003860238.1| - 0.0028 16.4 0.1 0.048 12.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain T4SS-DNA_transf PF02534.14 gi|305663950|ref|YP_003860238.1| - 0.0064 15.3 0.0 0.0076 15.1 0.0 1.1 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer AAA_24 PF13479.6 gi|305663950|ref|YP_003860238.1| - 0.013 15.2 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|305663950|ref|YP_003860238.1| - 0.024 14.9 0.1 0.38 11.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|305663950|ref|YP_003860238.1| - 0.024 14.4 0.0 0.066 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|305663950|ref|YP_003860238.1| - 0.032 14.2 0.1 0.088 12.7 0.1 1.8 1 1 1 2 2 2 0 NACHT domain CobU PF02283.16 gi|305663950|ref|YP_003860238.1| - 0.033 13.8 0.3 0.24 11.0 0.0 2.1 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase TniB PF05621.11 gi|305663950|ref|YP_003860238.1| - 0.034 13.6 0.1 0.74 9.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein Acyltransferase PF01553.21 gi|305663950|ref|YP_003860238.1| - 0.04 13.5 0.1 4.2 7.0 0.0 2.8 3 0 0 3 3 3 0 Acyltransferase AAA_5 PF07728.14 gi|305663950|ref|YP_003860238.1| - 0.049 13.6 0.1 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|305663950|ref|YP_003860238.1| - 0.087 11.9 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Adeno_IVa2 PF02456.15 gi|305663950|ref|YP_003860238.1| - 0.092 11.5 1.5 0.14 10.9 0.2 1.9 2 1 1 3 3 3 0 Adenovirus IVa2 protein AAA_33 PF13671.6 gi|305663950|ref|YP_003860238.1| - 0.11 12.7 0.0 0.33 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|305663950|ref|YP_003860238.1| - 0.15 11.6 0.0 0.4 10.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|305663950|ref|YP_003860238.1| - 0.16 11.7 0.0 0.66 9.7 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|305663950|ref|YP_003860238.1| - 0.16 11.3 0.0 0.58 9.5 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|305663950|ref|YP_003860238.1| - 0.18 11.3 0.0 1.2 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|305663951|ref|YP_003860239.1| - 1.2e-13 51.2 17.5 1.2e-13 51.2 17.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component CPBP PF02517.16 gi|305663951|ref|YP_003860239.1| - 4.7 7.6 12.5 13 6.2 2.5 2.9 2 1 0 2 2 2 0 CPBP intramembrane metalloprotease SBP_bac_3 PF00497.20 gi|305663952|ref|YP_003860240.1| - 2.7e-64 216.7 0.3 3.1e-64 216.5 0.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|305663952|ref|YP_003860240.1| - 7e-11 42.3 0.2 5.5e-10 39.5 0.2 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|305663952|ref|YP_003860240.1| - 3.8e-07 30.3 1.1 0.00015 21.8 0.2 2.3 1 1 1 2 2 2 2 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|305663952|ref|YP_003860240.1| - 8.6e-07 28.8 0.1 1.2e-06 28.4 0.1 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein YhfZ_C PF14503.6 gi|305663952|ref|YP_003860240.1| - 7.6e-06 25.6 2.4 0.0011 18.6 0.3 2.1 1 1 1 2 2 2 2 YhfZ C-terminal domain OpuAC PF04069.12 gi|305663952|ref|YP_003860240.1| - 0.001 18.7 0.2 0.92 9.0 0.0 2.1 1 1 1 2 2 2 2 Substrate binding domain of ABC-type glycine betaine transport system FA_synthesis PF02504.15 gi|305663952|ref|YP_003860240.1| - 0.0047 16.0 0.2 0.0062 15.6 0.2 1.1 1 0 0 1 1 1 1 Fatty acid synthesis protein Wzz PF02706.15 gi|305663952|ref|YP_003860240.1| - 0.0059 16.9 7.5 0.023 15.0 0.1 2.4 2 0 0 2 2 2 1 Chain length determinant protein TctC PF03401.14 gi|305663952|ref|YP_003860240.1| - 0.011 14.8 0.2 0.032 13.3 0.1 1.7 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter family receptor BacteriocIIc_cy PF12173.8 gi|305663952|ref|YP_003860240.1| - 0.034 14.4 1.6 0.32 11.3 0.0 2.7 3 0 0 3 3 3 0 Bacteriocin class IIc cyclic gassericin A-like NMT1_3 PF16868.5 gi|305663952|ref|YP_003860240.1| - 0.053 12.9 0.1 0.084 12.3 0.1 1.3 1 1 0 1 1 1 0 NMT1-like family SBP_bac_11 PF13531.6 gi|305663952|ref|YP_003860240.1| - 0.13 12.0 0.2 1.1 9.0 0.2 2.2 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein ILVD_EDD PF00920.21 gi|305663953|ref|YP_003860241.1| - 1.6e-228 759.5 0.5 1.9e-228 759.3 0.5 1.0 1 0 0 1 1 1 1 Dehydratase family HMGL-like PF00682.19 gi|305663954|ref|YP_003860242.1| - 1.7e-56 191.7 0.1 2.3e-56 191.3 0.1 1.2 1 0 0 1 1 1 1 HMGL-like Radical_SAM PF04055.21 gi|305663954|ref|YP_003860242.1| - 0.051 14.0 0.7 0.63 10.4 0.2 3.0 2 2 0 2 2 2 0 Radical SAM superfamily LeuA_dimer PF08502.10 gi|305663954|ref|YP_003860242.1| - 0.077 12.9 0.2 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 LeuA allosteric (dimerisation) domain PEP_mutase PF13714.6 gi|305663954|ref|YP_003860242.1| - 0.078 12.4 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Glyco_hydro_4C PF11975.8 gi|305663954|ref|YP_003860242.1| - 0.089 12.9 0.3 0.35 10.9 0.0 2.1 3 0 0 3 3 3 0 Family 4 glycosyl hydrolase C-terminal domain IlvN PF07991.12 gi|305663955|ref|YP_003860243.1| - 8.3e-70 233.6 0.0 1.2e-69 233.2 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|305663955|ref|YP_003860243.1| - 3.2e-56 189.6 1.4 4.8e-56 189.1 1.4 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|305663955|ref|YP_003860243.1| - 5.6e-07 30.0 0.0 3.6e-06 27.5 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|305663955|ref|YP_003860243.1| - 2.8e-05 23.6 0.0 5.5e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|305663955|ref|YP_003860243.1| - 0.00012 22.3 0.0 0.00037 20.7 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|305663955|ref|YP_003860243.1| - 0.022 14.8 0.0 0.078 13.1 0.0 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|305663955|ref|YP_003860243.1| - 0.037 13.7 0.1 0.065 12.9 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|305663955|ref|YP_003860243.1| - 0.046 13.7 1.0 7.3 6.5 0.1 2.7 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Crp PF00325.20 gi|305663955|ref|YP_003860243.1| - 0.19 11.4 0.8 0.59 9.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family ACT_5 PF13710.6 gi|305663956|ref|YP_003860244.1| - 5.2e-05 23.0 0.0 8.1e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 ACT domain DUF2538 PF10804.8 gi|305663956|ref|YP_003860244.1| - 0.0024 17.7 0.4 0.0028 17.4 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2538) TPP_enzyme_N PF02776.18 gi|305663957|ref|YP_003860245.1| - 6.7e-55 185.3 0.1 7e-54 182.0 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|305663957|ref|YP_003860245.1| - 2.2e-44 150.9 1.4 9.2e-43 145.7 0.1 2.9 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|305663957|ref|YP_003860245.1| - 7.3e-39 132.6 0.1 1.8e-38 131.4 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|305663957|ref|YP_003860245.1| - 9.8e-05 22.2 0.5 0.00058 19.7 0.2 2.1 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CO_dh PF02552.16 gi|305663957|ref|YP_003860245.1| - 0.019 14.8 0.5 0.061 13.1 0.4 1.9 1 1 1 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HMGL-like PF00682.19 gi|305663959|ref|YP_003860247.1| - 1e-89 300.6 1.9 1.4e-89 300.2 1.9 1.2 1 0 0 1 1 1 1 HMGL-like Radical_SAM PF04055.21 gi|305663959|ref|YP_003860247.1| - 0.023 15.1 0.1 1.2 9.5 0.1 2.6 2 1 0 2 2 2 0 Radical SAM superfamily Iso_dh PF00180.20 gi|305663960|ref|YP_003860248.1| - 6.3e-103 344.6 0.3 7.6e-103 344.3 0.3 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|305663960|ref|YP_003860248.1| - 0.007 15.8 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA DUF166 PF02593.14 gi|305663960|ref|YP_003860248.1| - 0.058 12.9 0.2 0.18 11.3 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function Zip PF02535.22 gi|305663961|ref|YP_003860249.1| - 8.1e-20 71.3 19.7 5e-17 62.1 8.3 2.1 2 0 0 2 2 2 2 ZIP Zinc transporter PspC PF04024.12 gi|305663961|ref|YP_003860249.1| - 0.14 12.0 0.1 0.14 12.0 0.1 2.7 3 1 0 3 3 3 0 PspC domain E1-E2_ATPase PF00122.20 gi|305663961|ref|YP_003860249.1| - 0.53 9.8 11.5 0.2 11.2 0.4 3.1 2 1 2 4 4 4 0 E1-E2 ATPase MIT_C PF16565.5 gi|305663962|ref|YP_003860250.1| - 0.011 15.8 0.1 0.013 15.5 0.1 1.2 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT Aldolase_II PF00596.21 gi|305663963|ref|YP_003860251.1| - 2.1e-43 148.4 0.0 2.4e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain PRA-CH PF01502.18 gi|305663965|ref|YP_003860253.1| - 1.3e-30 105.0 0.0 2.3e-30 104.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase GATase PF00117.28 gi|305663966|ref|YP_003860254.1| - 5.1e-17 62.3 0.0 6.5e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Endothelin PF00322.17 gi|305663966|ref|YP_003860254.1| - 0.071 12.7 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Endothelin family GATase_3 PF07685.14 gi|305663966|ref|YP_003860254.1| - 0.08 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|305663966|ref|YP_003860254.1| - 0.24 11.1 0.1 0.92 9.2 0.1 1.8 1 1 0 1 1 1 0 Peptidase C26 PRA-PH PF01503.17 gi|305663967|ref|YP_003860255.1| - 8.4e-15 55.0 0.0 9.9e-15 54.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|305663967|ref|YP_003860255.1| - 0.088 13.0 0.0 0.38 11.0 0.0 1.9 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain FAM25 PF15825.5 gi|305663967|ref|YP_003860255.1| - 0.11 12.8 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 FAM25 family Histidinol_dh PF00815.20 gi|305663968|ref|YP_003860256.1| - 5.8e-124 414.2 0.0 1.8e-123 412.6 0.0 1.6 1 1 0 1 1 1 1 Histidinol dehydrogenase FAM25 PF15825.5 gi|305663968|ref|YP_003860256.1| - 0.14 12.5 0.3 0.34 11.3 0.3 1.6 1 0 0 1 1 1 0 FAM25 family His_biosynth PF00977.21 gi|305663969|ref|YP_003860257.1| - 5.1e-84 281.3 4.2 5.8e-84 281.1 4.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|305663969|ref|YP_003860257.1| - 1.2e-08 34.8 2.7 0.0003 20.3 0.1 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.17 gi|305663969|ref|YP_003860257.1| - 1.5e-05 24.4 0.6 0.14 11.5 0.1 2.4 2 1 0 2 2 2 2 Thiamine monophosphate synthase ThiG PF05690.14 gi|305663969|ref|YP_003860257.1| - 2.1e-05 24.0 0.3 0.0094 15.3 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|305663969|ref|YP_003860257.1| - 0.00081 18.7 0.3 0.19 10.9 0.0 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|305663969|ref|YP_003860257.1| - 0.001 18.2 0.1 0.48 9.5 0.0 2.2 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|305663969|ref|YP_003860257.1| - 0.002 17.6 0.1 0.078 12.4 0.0 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator SBP_bac_3 PF00497.20 gi|305663969|ref|YP_003860257.1| - 0.12 11.8 0.1 0.36 10.2 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 IGPD PF00475.18 gi|305663970|ref|YP_003860258.1| - 9.4e-48 162.2 0.2 1.5e-47 161.5 0.1 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase CDC48_2 PF02933.17 gi|305663970|ref|YP_003860258.1| - 0.13 12.0 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 His_biosynth PF00977.21 gi|305663971|ref|YP_003860259.1| - 6.1e-48 163.3 1.6 6.9e-48 163.1 1.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|305663971|ref|YP_003860259.1| - 0.00017 21.1 1.1 0.00025 20.6 0.2 1.7 2 0 0 2 2 2 1 PcrB family HisG PF01634.18 gi|305663972|ref|YP_003860260.1| - 8.2e-46 155.9 0.0 1.1e-45 155.5 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|305663972|ref|YP_003860260.1| - 1e-18 67.2 0.7 4.5e-18 65.2 1.0 2.0 2 0 0 2 2 2 1 HisG, C-terminal domain Aminotran_1_2 PF00155.21 gi|305663973|ref|YP_003860261.1| - 4.8e-43 147.7 0.0 5.4e-43 147.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Fer4_7 PF12838.7 gi|305663975|ref|YP_003860263.1| - 2.2e-16 60.2 37.8 1.6e-09 38.2 14.8 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|305663975|ref|YP_003860263.1| - 2.5e-16 58.7 17.5 1.8e-08 33.9 5.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|305663975|ref|YP_003860263.1| - 1e-12 47.5 16.9 4.3e-07 29.7 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|305663975|ref|YP_003860263.1| - 6.6e-12 45.4 11.8 8.2e-12 45.1 11.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|305663975|ref|YP_003860263.1| - 9.3e-11 41.7 25.5 6.1e-08 32.7 14.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|305663975|ref|YP_003860263.1| - 3.1e-10 39.5 14.3 1.7e-05 24.6 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|305663975|ref|YP_003860263.1| - 8.2e-10 38.7 12.3 1.1e-09 38.3 12.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|305663975|ref|YP_003860263.1| - 1.2e-09 39.0 8.0 3.6e-05 24.6 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|305663975|ref|YP_003860263.1| - 2.1e-08 34.1 14.0 2.2e-05 24.6 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|305663975|ref|YP_003860263.1| - 1.8e-07 31.7 11.0 1.7e-05 25.5 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|305663975|ref|YP_003860263.1| - 3.1e-07 30.8 7.4 0.0035 17.8 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|305663975|ref|YP_003860263.1| - 6.3e-07 29.8 14.6 9.5e-06 26.1 1.7 2.6 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|305663975|ref|YP_003860263.1| - 1.8e-05 25.1 12.3 0.0059 17.0 1.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|305663975|ref|YP_003860263.1| - 4.7e-05 24.2 8.1 0.027 15.3 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|305663975|ref|YP_003860263.1| - 4.7e-05 24.0 19.4 0.032 15.1 5.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|305663975|ref|YP_003860263.1| - 0.0052 16.9 8.1 0.022 14.9 8.1 1.8 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|305663975|ref|YP_003860263.1| - 0.023 14.9 13.2 1.2 9.4 13.2 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|305663975|ref|YP_003860263.1| - 0.054 13.6 5.5 0.066 13.3 5.5 1.1 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster c-SKI_SMAD_bind PF08782.10 gi|305663975|ref|YP_003860263.1| - 2.9 8.2 10.7 0.24 11.6 1.6 2.1 1 1 1 2 2 2 0 c-SKI Smad4 binding domain DUF362 PF04015.12 gi|305663976|ref|YP_003860264.1| - 1.8e-31 110.0 0.0 2.3e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) PDZ_6 PF17820.1 gi|305663976|ref|YP_003860264.1| - 0.056 13.3 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 PDZ domain Lar_N PF09861.9 gi|305663976|ref|YP_003860264.1| - 0.072 12.2 0.3 0.14 11.3 0.1 1.5 2 0 0 2 2 2 0 Lactate racemase N-terminal domain DEAD PF00270.29 gi|305663977|ref|YP_003860265.1| - 4.7e-23 81.9 0.0 8.4e-23 81.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|305663977|ref|YP_003860265.1| - 5.2e-08 33.2 0.0 1.7e-07 31.6 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|305663977|ref|YP_003860265.1| - 3.2e-05 22.8 0.0 5.1e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain HHH_5 PF14520.6 gi|305663977|ref|YP_003860265.1| - 0.047 14.3 0.1 0.16 12.6 0.1 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF3986 PF13143.6 gi|305663977|ref|YP_003860265.1| - 0.075 14.0 2.4 9.4 7.3 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3986) T2SSE PF00437.20 gi|305663977|ref|YP_003860265.1| - 0.16 11.0 0.1 0.49 9.4 0.1 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein ATP-grasp_5 PF13549.6 gi|305663978|ref|YP_003860266.1| - 6.9e-81 270.9 0.1 7.7e-81 270.8 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|305663978|ref|YP_003860266.1| - 1.9e-07 30.9 0.0 2.7e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|305663978|ref|YP_003860266.1| - 0.014 14.9 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|305663978|ref|YP_003860266.1| - 0.019 14.6 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain RimK PF08443.11 gi|305663978|ref|YP_003860266.1| - 0.022 14.4 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain Succ_CoA_lig PF13607.6 gi|305663979|ref|YP_003860267.1| - 1.9e-53 180.0 0.1 5.1e-52 175.3 0.0 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|305663979|ref|YP_003860267.1| - 1.6e-23 83.4 0.1 1.5e-22 80.3 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|305663979|ref|YP_003860267.1| - 8.5e-13 48.8 0.5 3.5e-12 46.8 0.1 2.2 2 0 0 2 2 2 1 CoA binding domain AsnC_trans_reg PF01037.21 gi|305663982|ref|YP_003860270.1| - 4.3e-16 58.6 0.2 7.4e-16 57.9 0.2 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|305663982|ref|YP_003860270.1| - 2.5e-09 36.5 1.9 2.5e-09 36.5 1.9 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|305663982|ref|YP_003860270.1| - 1.1e-08 34.7 1.7 1.1e-08 34.7 1.7 1.9 3 0 0 3 3 2 1 AsnC-type helix-turn-helix domain HTH_38 PF13936.6 gi|305663982|ref|YP_003860270.1| - 0.00014 21.5 0.3 0.00028 20.6 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|305663982|ref|YP_003860270.1| - 0.00075 19.3 0.3 0.0017 18.2 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|305663982|ref|YP_003860270.1| - 0.0012 18.8 0.2 0.0024 17.8 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|305663982|ref|YP_003860270.1| - 0.0014 18.5 0.2 0.0032 17.3 0.3 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|305663982|ref|YP_003860270.1| - 0.0031 17.3 0.1 0.03 14.1 0.1 2.2 1 1 1 2 2 2 1 Homeodomain-like domain TrmB PF01978.19 gi|305663982|ref|YP_003860270.1| - 0.0035 17.2 0.2 0.014 15.3 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|305663982|ref|YP_003860270.1| - 0.0043 17.0 0.5 0.067 13.1 0.2 2.2 2 0 0 2 2 2 1 MarR family LexA_DNA_bind PF01726.16 gi|305663982|ref|YP_003860270.1| - 0.0049 16.6 0.0 0.0086 15.8 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain Sigma70_r4_2 PF08281.12 gi|305663982|ref|YP_003860270.1| - 0.0052 16.4 0.1 0.015 15.0 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|305663982|ref|YP_003860270.1| - 0.0063 16.2 1.1 0.011 15.5 0.3 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|305663982|ref|YP_003860270.1| - 0.01 15.8 0.3 0.023 14.6 0.3 1.7 1 0 0 1 1 1 0 HTH domain AsnC_trans_reg2 PF17805.1 gi|305663982|ref|YP_003860270.1| - 0.016 15.4 0.0 0.027 14.6 0.0 1.4 1 0 0 1 1 1 0 AsnC-like ligand binding domain HTH_29 PF13551.6 gi|305663982|ref|YP_003860270.1| - 0.023 14.7 0.0 0.12 12.4 0.0 2.0 1 1 1 2 2 2 0 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|305663982|ref|YP_003860270.1| - 0.069 13.4 0.0 0.55 10.5 0.0 2.3 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|305663982|ref|YP_003860270.1| - 0.11 12.6 0.0 0.32 11.1 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|305663982|ref|YP_003860270.1| - 0.17 12.0 0.0 0.37 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DEAD PF00270.29 gi|305663983|ref|YP_003860271.1| - 7.4e-17 61.7 0.0 2.2e-16 60.1 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|305663983|ref|YP_003860271.1| - 5.3e-14 52.5 0.7 9.8e-13 48.4 0.6 2.9 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|305663983|ref|YP_003860271.1| - 0.0023 18.0 0.1 0.0065 16.5 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit LytR_cpsA_psr PF03816.14 gi|305663984|ref|YP_003860272.1| - 0.061 13.5 0.0 0.081 13.1 0.0 1.1 1 0 0 1 1 1 0 Cell envelope-related transcriptional attenuator domain Cbl_N3 PF02762.14 gi|305663985|ref|YP_003860273.1| - 0.014 15.2 0.0 0.041 13.8 0.0 1.7 2 0 0 2 2 2 0 CBL proto-oncogene N-terminus, SH2-like domain CitMHS PF03600.16 gi|305663987|ref|YP_003860275.1| - 1.6e-22 80.1 40.1 1.6e-22 80.1 40.1 2.4 1 1 2 3 3 3 2 Citrate transporter ArsB PF02040.15 gi|305663987|ref|YP_003860275.1| - 4.6e-10 39.4 43.1 1.3e-09 38.0 42.2 2.0 1 1 1 2 2 2 1 Arsenical pump membrane protein Na_sulph_symp PF00939.19 gi|305663987|ref|YP_003860275.1| - 9.8e-05 21.6 25.0 9.8e-05 21.6 25.0 3.0 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region ATP-grasp_3 PF02655.14 gi|305663988|ref|YP_003860276.1| - 6.5e-05 23.0 0.0 0.00021 21.3 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain HAD_2 PF13419.6 gi|305663988|ref|YP_003860276.1| - 0.00067 19.8 0.1 0.0024 18.0 0.1 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase ATPgrasp_Ter PF15632.6 gi|305663988|ref|YP_003860276.1| - 0.00072 19.3 0.0 0.0015 18.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Arm_3 PF16186.5 gi|305663988|ref|YP_003860276.1| - 0.002 17.6 1.1 0.011 15.3 0.3 2.5 2 0 0 2 2 2 1 Atypical Arm repeat Polysacc_deac_1 PF01522.21 gi|305663989|ref|YP_003860277.1| - 0.0001 22.2 0.0 0.00025 20.9 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide deacetylase malic PF00390.19 gi|305663990|ref|YP_003860278.1| - 2.5e-25 89.3 0.5 2.7e-17 63.1 0.2 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|305663990|ref|YP_003860278.1| - 5.9e-25 88.0 0.7 2.3e-23 82.8 0.7 2.3 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain HTH_24 PF13412.6 gi|305663991|ref|YP_003860279.1| - 6.8e-07 28.7 0.0 1.3e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Stevor PF17410.2 gi|305663991|ref|YP_003860279.1| - 0.00033 20.3 0.6 0.00033 20.3 0.6 2.0 2 0 0 2 2 2 1 Subtelomeric Variable Open Reading frame HTH_20 PF12840.7 gi|305663991|ref|YP_003860279.1| - 0.00057 19.9 0.0 0.00094 19.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|305663991|ref|YP_003860279.1| - 0.00073 19.4 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|305663991|ref|YP_003860279.1| - 0.0026 17.7 0.1 0.0056 16.6 0.1 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|305663991|ref|YP_003860279.1| - 0.006 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|305663991|ref|YP_003860279.1| - 0.011 15.6 0.1 0.046 13.6 0.1 2.0 1 1 0 1 1 1 0 MarR family Viral_Beta_CD PF04530.12 gi|305663991|ref|YP_003860279.1| - 0.02 15.2 3.0 2.3 8.5 0.0 2.3 2 0 0 2 2 2 0 Viral Beta C/D like family DHHC PF01529.20 gi|305663991|ref|YP_003860279.1| - 0.024 14.7 6.1 0.1 12.7 1.1 2.3 2 0 0 2 2 2 0 DHHC palmitoyltransferase EphA2_TM PF14575.6 gi|305663991|ref|YP_003860279.1| - 0.056 14.3 1.9 0.71 10.8 0.1 2.3 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain HTH_IclR PF09339.10 gi|305663991|ref|YP_003860279.1| - 0.059 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Orf78 PF06024.12 gi|305663991|ref|YP_003860279.1| - 0.14 12.5 5.9 1.7 9.0 0.1 2.3 2 0 0 2 2 2 0 Orf78 (ac78) ASFV_J13L PF05568.11 gi|305663991|ref|YP_003860279.1| - 1.1 9.0 8.4 0.082 12.6 1.1 2.2 2 0 0 2 2 2 0 African swine fever virus J13L protein Renin_r PF07850.14 gi|305663991|ref|YP_003860279.1| - 1.6 9.4 7.0 1.7 9.3 0.6 2.3 2 0 0 2 2 2 0 Renin receptor-like protein TMEM154 PF15102.6 gi|305663991|ref|YP_003860279.1| - 2.1 8.2 5.9 0.64 9.9 0.9 2.1 2 0 0 2 2 2 0 TMEM154 protein family Sigma_reg_N PF13800.6 gi|305663991|ref|YP_003860279.1| - 2.4 8.5 10.2 5.2 7.4 2.1 2.8 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Pox_EPC_I2-L1 PF12575.8 gi|305663991|ref|YP_003860279.1| - 8.7 6.6 7.1 4.7 7.5 0.3 2.4 2 0 0 2 2 2 0 Poxvirus entry protein complex L1 and I2 Sugarporin_N PF11471.8 gi|305663992|ref|YP_003860280.1| - 0.0015 18.4 4.9 0.0062 16.5 0.3 3.1 2 0 0 2 2 2 1 Maltoporin periplasmic N-terminal extension DUF357 PF04010.13 gi|305663992|ref|YP_003860280.1| - 0.0062 16.6 1.4 1.3 9.1 0.0 4.2 4 1 0 4 4 3 1 Protein of unknown function (DUF357) Abi_C PF14355.6 gi|305663992|ref|YP_003860280.1| - 0.0088 16.1 4.6 1.1 9.4 0.1 4.3 3 1 1 4 4 4 1 Abortive infection C-terminus HisKA_3 PF07730.13 gi|305663992|ref|YP_003860280.1| - 0.014 15.9 8.6 34 5.1 0.3 5.8 5 2 1 6 6 5 0 Histidine kinase DUF5616 PF18481.1 gi|305663992|ref|YP_003860280.1| - 0.022 15.1 4.2 0.29 11.4 0.3 3.6 2 1 1 3 3 3 0 Domain of unknown function (DUF5616) PX PF00787.24 gi|305663992|ref|YP_003860280.1| - 0.039 13.9 2.6 7.6 6.6 0.1 3.4 3 0 0 3 3 3 0 PX domain Bromodomain PF00439.25 gi|305663992|ref|YP_003860280.1| - 0.067 13.3 1.6 0.32 11.1 0.1 3.0 4 0 0 4 4 3 0 Bromodomain Apolipoprotein PF01442.18 gi|305663992|ref|YP_003860280.1| - 0.087 12.7 21.4 1.7 8.4 11.5 3.7 2 1 1 3 3 3 0 Apolipoprotein A1/A4/E domain FF PF01846.19 gi|305663992|ref|YP_003860280.1| - 0.13 12.5 0.7 26 5.1 0.0 3.4 2 0 0 2 2 2 0 FF domain RHH_3 PF12651.7 gi|305663992|ref|YP_003860280.1| - 0.18 11.8 7.8 1.2 9.2 0.0 5.0 4 1 0 4 4 3 0 Ribbon-helix-helix domain ZYG-11_interact PF05884.12 gi|305663992|ref|YP_003860280.1| - 0.24 10.8 9.1 0.48 9.8 1.5 3.0 3 0 0 3 3 3 0 Interactor of ZYG-11 Egg_lysin PF01303.17 gi|305663992|ref|YP_003860280.1| - 0.4 10.9 4.0 2.5 8.4 1.9 2.9 2 0 0 2 2 2 0 Egg lysin (Sperm-lysin) Med4 PF10018.9 gi|305663992|ref|YP_003860280.1| - 0.47 10.1 9.4 1.5 8.4 4.5 2.9 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Serine_rich PF08824.10 gi|305663992|ref|YP_003860280.1| - 0.51 10.3 14.8 0.25 11.3 1.6 4.3 3 1 1 5 5 4 0 Serine rich protein interaction domain FCH PF00611.23 gi|305663992|ref|YP_003860280.1| - 0.61 10.4 6.8 2 8.7 0.2 4.6 4 1 0 4 4 4 0 Fes/CIP4, and EFC/F-BAR homology domain DUF2203 PF09969.9 gi|305663992|ref|YP_003860280.1| - 0.7 10.6 23.2 1.6 9.5 0.0 5.4 3 2 2 5 5 5 0 Uncharacterized conserved protein (DUF2203) HalX PF08663.10 gi|305663992|ref|YP_003860280.1| - 0.78 10.1 6.9 7.2 7.0 0.4 3.0 3 0 0 3 3 2 0 HalX domain Laminin_II PF06009.12 gi|305663992|ref|YP_003860280.1| - 1 9.4 28.8 0.45 10.5 0.5 4.5 3 1 1 4 4 4 0 Laminin Domain II 7TMR-HDED PF07697.11 gi|305663992|ref|YP_003860280.1| - 1 9.4 23.6 59 3.7 0.1 3.9 1 1 0 2 2 2 0 7TM-HD extracellular DUF2802 PF10975.8 gi|305663992|ref|YP_003860280.1| - 1.2 9.4 6.1 2.2 8.5 0.1 3.8 4 0 0 4 4 3 0 Protein of unknown function (DUF2802) YtxH PF12732.7 gi|305663992|ref|YP_003860280.1| - 1.5 9.4 18.2 26 5.4 0.2 5.6 4 3 1 5 5 4 0 YtxH-like protein Vac_Fusion PF02346.16 gi|305663992|ref|YP_003860280.1| - 1.8 8.3 7.8 0.9 9.2 0.4 3.5 3 0 0 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 DUF1515 PF07439.11 gi|305663992|ref|YP_003860280.1| - 2.8 8.0 10.1 0.54 10.3 0.1 3.5 2 1 1 4 4 4 0 Protein of unknown function (DUF1515) DUF1664 PF07889.12 gi|305663992|ref|YP_003860280.1| - 2.8 8.0 28.1 0.79 9.8 0.3 5.2 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|305663992|ref|YP_003860280.1| - 3.5 7.9 33.3 0.42 10.9 1.6 6.6 7 2 0 7 7 6 0 Bacterial protein of unknown function (DUF948) CAP59_mtransfer PF11735.8 gi|305663992|ref|YP_003860280.1| - 3.8 7.1 9.0 1.1 8.8 4.2 2.2 2 0 0 2 2 2 0 Cryptococcal mannosyltransferase 1 DUF883 PF05957.13 gi|305663992|ref|YP_003860280.1| - 4.7 7.9 17.1 0.15 12.7 0.6 5.6 5 3 0 5 5 4 0 Bacterial protein of unknown function (DUF883) Phasin PF05597.11 gi|305663992|ref|YP_003860280.1| - 4.9 7.2 22.3 0.028 14.4 4.0 4.6 3 1 2 5 5 5 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Acetyltransf_11 PF13720.6 gi|305663992|ref|YP_003860280.1| - 8.9 6.9 14.9 30 5.2 1.9 5.3 2 1 2 5 5 4 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Stevor PF17410.2 gi|305663993|ref|YP_003860281.1| - 4.6 6.7 8.4 8.4 5.9 8.4 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Nre_N PF04894.12 gi|305663994|ref|YP_003860282.1| - 6.7e-103 344.2 0.0 8.4e-103 343.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|305663994|ref|YP_003860282.1| - 7.2e-35 119.2 0.3 1.2e-34 118.5 0.3 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal RHH_3 PF12651.7 gi|305663995|ref|YP_003860283.1| - 2.8e-10 40.0 0.3 9.8e-10 38.2 0.1 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix domain NikR_C PF08753.11 gi|305663995|ref|YP_003860283.1| - 1.3e-06 28.5 0.3 2.3e-06 27.7 0.3 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|305663995|ref|YP_003860283.1| - 7.3e-06 25.7 0.2 1.1e-05 25.1 0.2 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family CcdA PF07362.12 gi|305663995|ref|YP_003860283.1| - 0.063 13.7 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA ABC-3 PF00950.17 gi|305663996|ref|YP_003860284.1| - 2e-17 63.5 32.5 2e-17 63.5 32.5 1.3 1 1 0 1 1 1 1 ABC 3 transport family ZnuA PF01297.17 gi|305663997|ref|YP_003860285.1| - 7.8e-13 48.4 0.0 1.1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Hpr_kinase_N PF02603.16 gi|305663997|ref|YP_003860285.1| - 0.011 15.8 0.1 0.024 14.6 0.1 1.6 1 0 0 1 1 1 0 HPr Serine kinase N terminus LRR_9 PF14580.6 gi|305663997|ref|YP_003860285.1| - 0.011 15.2 0.1 0.046 13.2 0.0 2.2 2 1 0 2 2 2 0 Leucine-rich repeat NPCC PF08058.11 gi|305663997|ref|YP_003860285.1| - 0.59 10.2 3.0 1.5 8.9 3.0 1.7 1 0 0 1 1 1 0 Nuclear pore complex component ABC_tran PF00005.27 gi|305663998|ref|YP_003860286.1| - 1e-29 103.8 0.0 1.3e-29 103.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305663998|ref|YP_003860286.1| - 5.5e-10 39.5 2.3 0.00046 20.1 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305663998|ref|YP_003860286.1| - 1.9e-05 24.2 0.0 0.036 13.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|305663998|ref|YP_003860286.1| - 3.8e-05 23.6 0.0 0.017 14.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|305663998|ref|YP_003860286.1| - 9e-05 22.1 0.1 0.00019 21.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|305663998|ref|YP_003860286.1| - 0.00022 20.9 0.0 0.00031 20.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305663998|ref|YP_003860286.1| - 0.00033 21.1 0.3 0.00074 19.9 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|305663998|ref|YP_003860286.1| - 0.00075 20.1 0.0 0.0012 19.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|305663998|ref|YP_003860286.1| - 0.0025 18.1 0.1 0.0037 17.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|305663998|ref|YP_003860286.1| - 0.0029 17.0 0.0 0.0049 16.3 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|305663998|ref|YP_003860286.1| - 0.0045 17.4 0.0 0.015 15.7 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|305663998|ref|YP_003860286.1| - 0.0052 16.7 0.0 0.01 15.8 0.0 1.5 2 0 0 2 2 1 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|305663998|ref|YP_003860286.1| - 0.012 15.6 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|305663998|ref|YP_003860286.1| - 0.016 14.3 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|305663998|ref|YP_003860286.1| - 0.017 15.3 0.1 0.032 14.4 0.1 1.6 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|305663998|ref|YP_003860286.1| - 0.017 14.7 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|305663998|ref|YP_003860286.1| - 0.028 14.1 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|305663998|ref|YP_003860286.1| - 0.028 14.3 0.2 0.053 13.4 0.2 1.4 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|305663998|ref|YP_003860286.1| - 0.031 14.2 0.0 0.066 13.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|305663998|ref|YP_003860286.1| - 0.035 14.1 0.0 0.066 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|305663998|ref|YP_003860286.1| - 0.048 13.4 0.1 0.086 12.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|305663998|ref|YP_003860286.1| - 0.063 13.5 0.1 0.67 10.2 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|305663998|ref|YP_003860286.1| - 0.072 13.6 0.8 0.37 11.4 0.2 2.2 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|305663998|ref|YP_003860286.1| - 0.081 12.5 0.1 0.13 11.8 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|305663998|ref|YP_003860286.1| - 0.099 12.6 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|305663998|ref|YP_003860286.1| - 0.13 11.9 0.6 0.21 11.2 0.6 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|305663998|ref|YP_003860286.1| - 0.14 10.7 0.0 0.22 10.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|305663998|ref|YP_003860286.1| - 0.16 11.9 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 NTPase PduV-EutP PF10662.9 gi|305663998|ref|YP_003860286.1| - 0.16 11.7 0.1 0.43 10.3 0.1 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.6 gi|305663998|ref|YP_003860286.1| - 0.19 11.9 0.1 0.32 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain MoaE PF02391.17 gi|305663999|ref|YP_003860287.1| - 2.7e-26 92.1 0.3 3.6e-26 91.7 0.3 1.2 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|305663999|ref|YP_003860287.1| - 1.2e-12 48.3 0.5 3.8e-12 46.7 0.0 2.1 3 0 0 3 3 3 1 ThiS family HTH_24 PF13412.6 gi|305664000|ref|YP_003860288.1| - 3.8e-06 26.4 1.8 8.5e-06 25.2 1.8 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|305664000|ref|YP_003860288.1| - 4.1e-06 26.6 0.2 1.1e-05 25.3 0.2 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|305664000|ref|YP_003860288.1| - 3e-05 23.8 0.0 9.1e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|305664000|ref|YP_003860288.1| - 0.00025 20.9 0.1 0.00052 19.9 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF2443 PF10398.9 gi|305664000|ref|YP_003860288.1| - 0.00089 19.3 0.0 0.38 10.8 0.0 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2443) B-block_TFIIIC PF04182.12 gi|305664000|ref|YP_003860288.1| - 0.0031 17.6 0.1 0.0087 16.2 0.1 1.8 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|305664000|ref|YP_003860288.1| - 0.023 14.6 0.0 0.054 13.4 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|305664000|ref|YP_003860288.1| - 0.023 15.0 0.0 0.061 13.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|305664000|ref|YP_003860288.1| - 0.025 14.4 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MreB_Mbl PF06723.13 gi|305664000|ref|YP_003860288.1| - 0.028 13.2 0.1 0.043 12.6 0.1 1.2 1 0 0 1 1 1 0 MreB/Mbl protein HTH_5 PF01022.20 gi|305664000|ref|YP_003860288.1| - 0.043 13.7 0.5 0.14 12.1 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family VitK2_biosynth PF02621.14 gi|305664000|ref|YP_003860288.1| - 0.064 12.8 0.0 6.2 6.2 0.0 2.1 2 0 0 2 2 2 0 Menaquinone biosynthesis HxlR PF01638.17 gi|305664000|ref|YP_003860288.1| - 0.085 12.7 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|305664000|ref|YP_003860288.1| - 0.12 12.6 0.0 1 9.6 0.0 2.4 3 0 0 3 3 3 0 Winged helix DNA-binding domain Radical_SAM PF04055.21 gi|305664001|ref|YP_003860289.1| - 1.9e-11 44.7 0.0 5.4e-11 43.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily BRE PF06113.12 gi|305664001|ref|YP_003860289.1| - 0.072 11.9 0.1 0.098 11.5 0.1 1.2 1 0 0 1 1 1 0 Brain and reproductive organ-expressed protein (BRE) DUF1848 PF08902.11 gi|305664001|ref|YP_003860289.1| - 0.57 9.9 8.6 15 5.2 5.8 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1848) Thymidylat_synt PF00303.19 gi|305664003|ref|YP_003860291.1| - 3.2e-20 72.4 0.0 3.8e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase RGS PF00615.19 gi|305664003|ref|YP_003860291.1| - 0.12 12.7 2.0 0.25 11.6 1.5 1.8 2 0 0 2 2 2 0 Regulator of G protein signaling domain RACo_C_ter PF14574.6 gi|305664004|ref|YP_003860292.1| - 9.9e-84 280.4 0.1 1.4e-83 279.9 0.1 1.2 1 0 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|305664004|ref|YP_003860292.1| - 1.1e-60 204.0 1.8 1.3e-59 200.5 0.4 2.8 3 0 0 3 3 3 1 RACo middle region RACo_linker PF17650.1 gi|305664004|ref|YP_003860292.1| - 1.9e-22 78.9 0.1 5.1e-22 77.5 0.0 1.8 2 0 0 2 2 2 1 RACo linker region Fer2 PF00111.27 gi|305664004|ref|YP_003860292.1| - 1.8e-10 40.6 0.0 3.6e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Bmp PF02608.14 gi|305664005|ref|YP_003860293.1| - 2.1e-28 99.2 0.3 2.8e-28 98.8 0.3 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_6 PF13458.6 gi|305664005|ref|YP_003860293.1| - 0.008 15.9 0.5 0.02 14.6 0.1 1.8 2 0 0 2 2 2 1 Periplasmic binding protein VirB8 PF04335.13 gi|305664005|ref|YP_003860293.1| - 0.074 12.9 3.2 0.38 10.6 0.0 2.4 2 0 0 2 2 2 0 VirB8 protein ABC_tran PF00005.27 gi|305664006|ref|YP_003860294.1| - 7.2e-41 139.9 0.0 4e-25 88.9 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|305664006|ref|YP_003860294.1| - 1.4e-05 25.0 0.3 0.033 14.0 0.2 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|305664006|ref|YP_003860294.1| - 0.0086 15.8 0.2 0.02 14.6 0.2 1.5 1 1 1 2 2 2 1 AAA ATPase domain Mgm101p PF06420.12 gi|305664006|ref|YP_003860294.1| - 0.013 15.0 0.0 1.5 8.3 0.0 2.4 2 0 0 2 2 2 0 Mitochondrial genome maintenance MGM101 AAA_29 PF13555.6 gi|305664006|ref|YP_003860294.1| - 0.015 15.1 0.1 0.073 12.8 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|305664006|ref|YP_003860294.1| - 0.024 15.2 0.1 0.042 14.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|305664006|ref|YP_003860294.1| - 0.11 12.9 0.0 0.67 10.4 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|305664006|ref|YP_003860294.1| - 0.11 12.6 0.0 0.71 10.0 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|305664006|ref|YP_003860294.1| - 0.16 11.7 0.1 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|305664006|ref|YP_003860294.1| - 0.25 10.8 0.1 0.86 9.0 0.1 1.8 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain BPD_transp_2 PF02653.16 gi|305664007|ref|YP_003860295.1| - 4.5e-36 124.4 27.6 4.5e-36 124.4 27.6 1.6 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|305664008|ref|YP_003860296.1| - 8.7e-21 74.3 34.1 1.5e-20 73.5 34.1 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component PHO4 PF01384.20 gi|305664009|ref|YP_003860297.1| - 4.9e-58 196.8 40.0 7.6e-57 192.9 40.0 2.0 1 1 0 1 1 1 1 Phosphate transporter family T_cell_tran_alt PF15128.6 gi|305664009|ref|YP_003860297.1| - 0.024 14.4 4.7 0.24 11.2 0.5 2.9 2 0 0 2 2 2 0 T-cell leukemia translocation-altered FGGY_N PF00370.21 gi|305664010|ref|YP_003860298.1| - 1.7e-14 54.0 0.0 9.5e-14 51.5 0.0 2.0 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|305664010|ref|YP_003860298.1| - 2e-07 30.9 0.0 3.4e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain AP_endonuc_2 PF01261.24 gi|305664011|ref|YP_003860299.1| - 1.1e-10 41.3 0.0 1.5e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Fucose_iso_C PF02952.17 gi|305664012|ref|YP_003860300.1| - 9.8e-16 57.8 0.0 1.6e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain Arabinose_Iso_C PF11762.8 gi|305664012|ref|YP_003860300.1| - 0.026 14.4 0.0 0.067 13.0 0.0 1.7 2 0 0 2 2 2 0 L-arabinose isomerase C-terminal domain Aldolase_II PF00596.21 gi|305664013|ref|YP_003860301.1| - 1.4e-31 109.9 0.0 1.7e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain FGGY_N PF00370.21 gi|305664014|ref|YP_003860302.1| - 6.1e-31 107.8 0.0 8.4e-31 107.4 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|305664014|ref|YP_003860302.1| - 2.5e-23 82.9 0.0 3.4e-23 82.4 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain RuBisCO_large PF00016.20 gi|305664015|ref|YP_003860303.1| - 4e-96 321.7 0.0 4.8e-96 321.5 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|305664015|ref|YP_003860303.1| - 8e-44 148.7 0.0 1.3e-43 148.0 0.0 1.3 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF697 PF05128.12 gi|305664015|ref|YP_003860303.1| - 0.19 11.4 0.1 0.35 10.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF697) Hydrolase_3 PF08282.12 gi|305664016|ref|YP_003860304.1| - 1.1e-28 100.7 0.0 3.7e-21 76.0 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|305664016|ref|YP_003860304.1| - 4.5e-08 32.9 0.0 7.1e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|305664016|ref|YP_003860304.1| - 4.3e-06 27.3 0.0 0.00015 22.2 0.0 2.7 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|305664016|ref|YP_003860304.1| - 0.0018 18.6 0.0 0.0092 16.3 0.0 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|305664016|ref|YP_003860304.1| - 0.099 12.7 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like HAD_2 PF13419.6 gi|305664016|ref|YP_003860304.1| - 0.16 12.0 0.1 1.8 8.6 0.0 2.3 2 1 1 3 3 3 0 Haloacid dehalogenase-like hydrolase CxxCxxCC PF03692.15 gi|305664017|ref|YP_003860305.1| - 8.9e-10 39.1 0.8 1.2e-09 38.7 0.8 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SBF PF01758.16 gi|305664019|ref|YP_003860307.1| - 6.3e-07 29.3 3.8 6.3e-07 29.3 3.8 3.2 1 1 2 3 3 3 1 Sodium Bile acid symporter family Mem_trans PF03547.18 gi|305664019|ref|YP_003860307.1| - 7.3e-07 27.9 30.1 0.00094 17.7 14.4 2.2 1 1 0 2 2 2 2 Membrane transport protein Methyltr_RsmB-F PF01189.17 gi|305664020|ref|YP_003860308.1| - 8.3e-31 107.2 0.0 1.2e-30 106.7 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|305664020|ref|YP_003860308.1| - 0.046 13.5 0.0 0.08 12.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|305664020|ref|YP_003860308.1| - 0.046 13.8 0.0 0.073 13.2 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|305664020|ref|YP_003860308.1| - 0.047 14.4 0.0 0.16 12.7 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain DUF4157 PF13699.6 gi|305664022|ref|YP_003860310.1| - 7.6e-05 22.9 0.0 0.00015 21.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) BSP PF04450.12 gi|305664022|ref|YP_003860310.1| - 0.11 12.3 0.1 0.24 11.2 0.0 1.5 2 0 0 2 2 2 0 Peptidase of plants and bacteria Glycos_transf_2 PF00535.26 gi|305664023|ref|YP_003860311.1| - 1.4e-21 77.0 0.1 2.7e-21 76.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|305664023|ref|YP_003860311.1| - 2.6e-10 40.6 0.0 3.9e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|305664023|ref|YP_003860311.1| - 2.3e-06 27.2 0.0 4.7e-06 26.2 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|305664023|ref|YP_003860311.1| - 1.2e-05 25.7 0.1 2.5e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|305664023|ref|YP_003860311.1| - 2.8e-05 23.7 0.0 4.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 PfkB PF00294.24 gi|305664025|ref|YP_003860313.1| - 4.2e-29 101.8 0.0 5.4e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Trypsin_2 PF13365.6 gi|305664026|ref|YP_003860314.1| - 6.4e-32 111.5 0.6 9.7e-32 110.9 0.6 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|305664026|ref|YP_003860314.1| - 1.2e-15 58.0 0.0 3.1e-15 56.6 0.0 1.6 1 1 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|305664026|ref|YP_003860314.1| - 3.8e-10 39.5 0.2 1.1e-09 37.9 0.2 1.9 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|305664026|ref|YP_003860314.1| - 4e-10 39.9 0.0 8.9e-10 38.8 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|305664026|ref|YP_003860314.1| - 8.7e-07 29.2 0.2 2.2e-06 27.9 0.0 1.8 2 0 0 2 2 2 1 PDZ domain Peptidase_S46 PF10459.9 gi|305664026|ref|YP_003860314.1| - 0.0012 17.6 0.7 0.24 10.0 0.2 2.1 2 0 0 2 2 2 2 Peptidase S46 UPF0184 PF03670.13 gi|305664029|ref|YP_003860317.1| - 0.14 12.6 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) CDC37_C PF08564.10 gi|305664029|ref|YP_003860317.1| - 0.16 12.1 0.0 0.38 10.9 0.0 1.6 1 0 0 1 1 1 0 Cdc37 C terminal domain CARDB PF07705.11 gi|305664031|ref|YP_003860319.1| - 0.41 10.9 6.2 0.54 10.6 0.1 3.8 3 1 2 5 5 5 0 CARDB DUF4064 PF13273.6 gi|305664031|ref|YP_003860319.1| - 4 7.8 7.3 23 5.3 0.7 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) TauE PF01925.19 gi|305664033|ref|YP_003860321.1| - 0.0019 17.9 6.6 0.0026 17.4 6.6 1.2 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE UPF0242 PF06785.11 gi|305664033|ref|YP_003860321.1| - 0.083 13.0 0.4 0.12 12.4 0.4 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF973 PF06157.11 gi|305664033|ref|YP_003860321.1| - 0.46 9.5 12.7 0.7 8.9 12.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF973) MARVEL PF01284.23 gi|305664033|ref|YP_003860321.1| - 0.65 10.0 13.0 0.66 10.0 4.8 2.0 1 1 1 2 2 2 0 Membrane-associating domain Ferric_reduct PF01794.19 gi|305664033|ref|YP_003860321.1| - 2.8 8.1 10.7 19 5.4 10.4 2.3 1 1 0 1 1 1 0 Ferric reductase like transmembrane component DUF2207 PF09972.9 gi|305664033|ref|YP_003860321.1| - 3 6.5 7.8 4.3 6.0 7.8 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) T2SSF PF00482.23 gi|305664034|ref|YP_003860322.1| - 3.1e-13 49.8 7.1 1.3e-08 34.8 0.2 3.2 3 1 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|305664035|ref|YP_003860323.1| - 8.4e-49 166.1 0.0 1.3e-48 165.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|305664035|ref|YP_003860323.1| - 0.00072 19.3 0.1 0.0017 18.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|305664035|ref|YP_003860323.1| - 0.031 13.6 0.0 0.064 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|305664035|ref|YP_003860323.1| - 0.038 14.5 0.0 0.073 13.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_23 PF13476.6 gi|305664035|ref|YP_003860323.1| - 0.055 14.0 1.0 0.13 12.7 1.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|305664035|ref|YP_003860323.1| - 0.064 13.5 0.0 0.19 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|305664035|ref|YP_003860323.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|305664036|ref|YP_003860324.1| - 2.5e-23 82.7 0.1 2.8e-23 82.5 0.1 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|305664036|ref|YP_003860324.1| - 5.4e-08 32.4 0.4 0.00067 18.9 0.0 2.1 2 0 0 2 2 2 2 PAXNEB protein Rad51 PF08423.11 gi|305664036|ref|YP_003860324.1| - 8.2e-07 28.5 0.0 1.1e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Rad51 IstB_IS21 PF01695.17 gi|305664036|ref|YP_003860324.1| - 0.00022 21.0 0.2 0.00058 19.6 0.1 1.7 1 1 1 2 2 2 1 IstB-like ATP binding protein DUF835 PF05763.12 gi|305664036|ref|YP_003860324.1| - 0.001 18.8 0.1 0.0021 17.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) NACHT PF05729.12 gi|305664036|ref|YP_003860324.1| - 0.003 17.5 0.3 0.0058 16.6 0.3 1.7 1 1 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 gi|305664036|ref|YP_003860324.1| - 0.004 17.6 0.0 0.0055 17.1 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.7 gi|305664036|ref|YP_003860324.1| - 0.0064 15.5 0.1 0.0084 15.1 0.1 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.6 gi|305664036|ref|YP_003860324.1| - 0.011 15.4 0.0 0.017 14.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain GvpD PF07088.11 gi|305664036|ref|YP_003860324.1| - 0.012 14.3 0.1 0.018 13.7 0.1 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein Bac_DnaA PF00308.18 gi|305664036|ref|YP_003860324.1| - 0.02 14.8 0.7 0.14 11.9 0.1 2.0 1 1 1 2 2 2 0 Bacterial dnaA protein DAP3 PF10236.9 gi|305664036|ref|YP_003860324.1| - 0.037 13.2 0.0 0.059 12.5 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 PIGA PF08288.12 gi|305664036|ref|YP_003860324.1| - 0.041 14.5 1.1 1.9 9.2 0.1 2.2 1 1 0 2 2 2 0 PIGA (GPI anchor biosynthesis) AAA_22 PF13401.6 gi|305664036|ref|YP_003860324.1| - 0.058 13.7 0.0 0.1 12.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|305664036|ref|YP_003860324.1| - 0.064 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|305664036|ref|YP_003860324.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF2075 PF09848.9 gi|305664036|ref|YP_003860324.1| - 0.12 11.6 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|305664036|ref|YP_003860324.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 1 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|305664036|ref|YP_003860324.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.4 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain DUF815 PF05673.13 gi|305664036|ref|YP_003860324.1| - 0.15 11.2 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF4249 PF14054.6 gi|305664037|ref|YP_003860325.1| - 0.017 14.7 0.1 0.023 14.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) DUF3989 PF13150.6 gi|305664037|ref|YP_003860325.1| - 0.13 12.0 0.7 0.5 10.1 0.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) DUF948 PF06103.11 gi|305664037|ref|YP_003860325.1| - 0.14 12.4 0.6 0.21 11.8 0.6 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Arch_flagellin PF01917.16 gi|305664038|ref|YP_003860326.1| - 1.6e-13 51.2 3.0 1.9e-13 50.9 3.0 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin ApoLp-III PF07464.11 gi|305664039|ref|YP_003860327.1| - 4.5e-05 23.6 1.2 9.8e-05 22.5 1.2 1.5 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) FlaC_arch PF05377.11 gi|305664039|ref|YP_003860327.1| - 0.0056 17.0 0.6 0.0056 17.0 0.6 2.7 3 0 0 3 3 3 1 Flagella accessory protein C (FlaC) Rab5-bind PF09311.11 gi|305664039|ref|YP_003860327.1| - 0.0065 15.9 1.9 0.0092 15.4 1.9 1.3 1 0 0 1 1 1 1 Rabaptin-like protein EzrA PF06160.12 gi|305664039|ref|YP_003860327.1| - 0.0076 14.5 3.1 0.011 13.9 3.1 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.12 gi|305664039|ref|YP_003860327.1| - 0.016 15.2 0.1 0.03 14.4 0.1 1.6 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4618 PF15397.6 gi|305664039|ref|YP_003860327.1| - 0.02 14.3 0.5 0.054 12.9 0.3 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) FAM184 PF15665.5 gi|305664039|ref|YP_003860327.1| - 0.023 14.5 6.0 0.036 13.8 6.0 1.2 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B Sec34 PF04136.15 gi|305664039|ref|YP_003860327.1| - 0.04 13.8 0.6 0.072 13.0 0.6 1.5 1 0 0 1 1 1 0 Sec34-like family Prominin PF05478.11 gi|305664039|ref|YP_003860327.1| - 0.042 11.8 0.5 0.065 11.2 0.5 1.2 1 0 0 1 1 1 0 Prominin CorA PF01544.18 gi|305664039|ref|YP_003860327.1| - 0.056 12.7 0.5 0.088 12.1 0.5 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Bromo_TP PF07524.13 gi|305664039|ref|YP_003860327.1| - 0.057 13.4 0.1 1.7 8.7 0.1 2.5 2 0 0 2 2 2 0 Bromodomain associated COG2 PF06148.11 gi|305664039|ref|YP_003860327.1| - 0.063 13.4 1.1 0.16 12.0 0.6 2.0 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3197 PF11432.8 gi|305664039|ref|YP_003860327.1| - 0.068 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3197) MT0933_antitox PF14013.6 gi|305664039|ref|YP_003860327.1| - 0.085 13.2 3.8 19 5.7 1.2 3.6 3 1 1 4 4 4 0 MT0933-like antitoxin protein Syntaxin-6_N PF09177.11 gi|305664039|ref|YP_003860327.1| - 0.099 13.2 3.7 0.66 10.6 3.7 2.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal End3 PF12761.7 gi|305664039|ref|YP_003860327.1| - 0.19 11.8 3.1 0.12 12.6 0.9 1.7 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 DUF4665 PF15679.5 gi|305664039|ref|YP_003860327.1| - 0.25 12.0 2.0 4.2 8.0 0.2 2.7 2 1 1 3 3 2 0 Domain of unknown function (DUF4665) P4Ha_N PF08336.11 gi|305664039|ref|YP_003860327.1| - 0.5 10.4 2.7 8.8 6.3 2.7 2.3 1 1 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF5446 PF17522.2 gi|305664039|ref|YP_003860327.1| - 1.4 9.1 13.8 0.81 9.9 0.4 3.3 3 1 0 3 3 2 0 Family of unknown function (DUF5446) DUF2203 PF09969.9 gi|305664039|ref|YP_003860327.1| - 4.1 8.1 6.0 29 5.4 0.8 3.2 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) HTH_45 PF14947.6 gi|305664040|ref|YP_003860328.1| - 1.9e-07 31.0 0.2 0.00065 19.6 0.2 3.0 3 0 0 3 3 3 2 Winged helix-turn-helix TrmB PF01978.19 gi|305664040|ref|YP_003860328.1| - 1.1e-06 28.4 0.1 3.2e-06 26.9 0.1 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|305664040|ref|YP_003860328.1| - 2.4e-06 27.3 0.1 0.00043 20.1 0.0 2.6 2 0 0 2 2 2 1 MarR family DUF4364 PF14277.6 gi|305664040|ref|YP_003860328.1| - 0.00013 21.7 0.0 0.00035 20.3 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) Penicillinase_R PF03965.16 gi|305664040|ref|YP_003860328.1| - 0.00018 21.8 0.0 0.0024 18.2 0.0 2.2 2 0 0 2 2 2 1 Penicillinase repressor HTH_36 PF13730.6 gi|305664040|ref|YP_003860328.1| - 0.00045 20.1 0.2 0.034 14.1 0.1 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|305664040|ref|YP_003860328.1| - 0.0005 19.6 0.8 0.017 14.7 0.3 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|305664040|ref|YP_003860328.1| - 0.0012 19.1 0.2 0.12 12.7 0.0 2.6 2 0 0 2 2 2 1 Transcriptional regulator HTH_27 PF13463.6 gi|305664040|ref|YP_003860328.1| - 0.0032 17.9 0.2 0.0097 16.4 0.1 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|305664040|ref|YP_003860328.1| - 0.0039 17.0 0.1 0.42 10.4 0.0 2.7 2 1 1 3 3 3 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|305664040|ref|YP_003860328.1| - 0.0046 17.1 0.1 0.43 10.8 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain DUF1495 PF07381.11 gi|305664040|ref|YP_003860328.1| - 0.0094 15.8 0.5 0.13 12.1 0.2 2.8 2 1 0 2 2 2 1 Winged helix DNA-binding domain (DUF1495) HTH_29 PF13551.6 gi|305664040|ref|YP_003860328.1| - 0.017 15.2 0.1 0.16 12.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix MarR PF01047.22 gi|305664040|ref|YP_003860328.1| - 0.018 15.0 0.1 0.29 11.1 0.0 2.5 2 0 0 2 2 2 0 MarR family Rio2_N PF09202.11 gi|305664040|ref|YP_003860328.1| - 0.038 14.2 0.1 0.1 12.8 0.1 1.7 1 0 0 1 1 1 0 Rio2, N-terminal HTH_23 PF13384.6 gi|305664040|ref|YP_003860328.1| - 0.039 13.8 0.1 0.68 9.8 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain DUF3489 PF11994.8 gi|305664040|ref|YP_003860328.1| - 0.054 13.6 0.0 0.094 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) DUF2250 PF10007.9 gi|305664040|ref|YP_003860328.1| - 0.099 12.8 0.1 0.49 10.5 0.0 2.2 3 1 0 3 3 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.20 gi|305664040|ref|YP_003860328.1| - 0.12 12.3 0.0 0.46 10.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF4423 PF14394.6 gi|305664040|ref|YP_003860328.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|305664040|ref|YP_003860328.1| - 0.12 12.5 0.2 0.64 10.3 0.1 2.1 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain OppC_N PF12911.7 gi|305664040|ref|YP_003860328.1| - 3 7.9 5.1 1.8 8.6 2.5 2.1 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DUF639 PF04842.12 gi|305664042|ref|YP_003860330.1| - 0.23 10.9 2.6 0.24 10.8 2.6 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF639) Ost5 PF05251.12 gi|305664042|ref|YP_003860330.1| - 0.34 11.2 12.4 0.19 12.0 4.8 2.2 1 1 1 2 2 2 0 Oligosaccharyltransferase subunit 5 DUF2207 PF09972.9 gi|305664042|ref|YP_003860330.1| - 0.67 8.6 7.9 0.75 8.5 7.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tetraspanin PF00335.20 gi|305664042|ref|YP_003860330.1| - 0.97 9.1 4.6 1.1 8.9 4.6 1.1 1 0 0 1 1 1 0 Tetraspanin family Phage_holin_3_6 PF07332.11 gi|305664042|ref|YP_003860330.1| - 1.4 9.0 4.9 1.8 8.6 4.9 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4481 PF14800.6 gi|305664042|ref|YP_003860330.1| - 4.7 6.6 6.6 6.1 6.2 6.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4481) Arch_flagellin PF01917.16 gi|305664043|ref|YP_003860331.1| - 1.1e-23 84.2 13.2 5.1e-20 72.3 5.4 2.8 2 1 0 2 2 2 2 Archaebacterial flagellin QueT PF06177.11 gi|305664046|ref|YP_003860334.1| - 6.5e-27 94.6 17.2 7.3e-27 94.5 17.2 1.0 1 0 0 1 1 1 1 QueT transporter DUF2273 PF10031.9 gi|305664046|ref|YP_003860334.1| - 0.048 13.7 4.0 0.048 13.7 4.0 3.2 3 0 0 3 3 3 0 Small integral membrane protein (DUF2273) DDDD PF10161.9 gi|305664046|ref|YP_003860334.1| - 9.7 6.0 5.7 34 4.3 2.4 2.6 2 1 1 3 3 3 0 Putative mitochondrial precursor protein ABC_tran PF00005.27 gi|305664047|ref|YP_003860335.1| - 6.2e-21 75.4 0.0 9e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|305664047|ref|YP_003860335.1| - 4e-09 36.2 0.1 0.00065 19.2 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|305664047|ref|YP_003860335.1| - 2.2e-07 31.0 1.3 7e-05 22.8 0.7 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|305664047|ref|YP_003860335.1| - 8.1e-07 29.7 2.3 1.3e-06 29.1 2.3 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|305664047|ref|YP_003860335.1| - 7.4e-05 22.4 0.1 0.00011 21.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|305664047|ref|YP_003860335.1| - 0.0074 15.0 0.1 0.0095 14.6 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|305664047|ref|YP_003860335.1| - 0.0076 16.7 0.0 0.11 12.9 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|305664047|ref|YP_003860335.1| - 0.0098 15.6 0.3 0.021 14.6 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|305664047|ref|YP_003860335.1| - 0.011 15.4 0.2 0.014 15.1 0.2 1.1 1 0 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|305664047|ref|YP_003860335.1| - 0.037 14.3 0.1 0.83 9.9 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|305664047|ref|YP_003860335.1| - 0.039 13.7 0.0 0.047 13.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|305664047|ref|YP_003860335.1| - 0.05 13.5 0.0 0.1 12.5 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|305664047|ref|YP_003860335.1| - 0.12 12.3 0.1 0.17 11.8 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|305664047|ref|YP_003860335.1| - 0.13 12.4 0.2 0.31 11.1 0.2 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|305664047|ref|YP_003860335.1| - 0.15 12.0 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 NTPase YlaC PF10777.9 gi|305664048|ref|YP_003860336.1| - 0.23 11.3 5.1 0.18 11.6 3.7 1.6 1 1 0 1 1 1 0 Inner membrane protein YlaC m04gp34like PF12216.8 gi|305664050|ref|YP_003860338.1| - 0.036 13.6 0.4 0.059 12.9 0.4 1.3 1 0 0 1 1 1 0 Immune evasion protein Pilin_N PF07790.11 gi|305664051|ref|YP_003860339.1| - 0.012 16.5 1.4 0.028 15.3 0.7 1.8 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal DUF2749 PF10907.8 gi|305664051|ref|YP_003860339.1| - 0.11 12.7 2.2 0.18 12.0 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) DUF3426 PF11906.8 gi|305664051|ref|YP_003860339.1| - 0.18 11.9 0.3 2 8.5 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3426) T2SSE PF00437.20 gi|305664052|ref|YP_003860340.1| - 4.2e-50 170.3 0.0 6e-50 169.8 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|305664052|ref|YP_003860340.1| - 4.5e-05 24.0 0.0 0.00014 22.4 0.0 1.8 2 0 0 2 2 1 1 ABC transporter AAA_29 PF13555.6 gi|305664052|ref|YP_003860340.1| - 8.2e-05 22.3 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|305664052|ref|YP_003860340.1| - 0.00011 22.8 0.0 0.00022 21.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|305664052|ref|YP_003860340.1| - 0.00095 19.5 0.0 0.018 15.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|305664052|ref|YP_003860340.1| - 0.0017 18.2 0.1 0.0063 16.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|305664052|ref|YP_003860340.1| - 0.0021 18.5 0.0 0.005 17.2 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|305664052|ref|YP_003860340.1| - 0.0087 16.0 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|305664052|ref|YP_003860340.1| - 0.012 16.0 0.0 0.024 15.1 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|305664052|ref|YP_003860340.1| - 0.016 14.9 0.0 0.062 13.0 0.0 2.0 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|305664052|ref|YP_003860340.1| - 0.02 14.3 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|305664052|ref|YP_003860340.1| - 0.021 14.4 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|305664052|ref|YP_003860340.1| - 0.025 14.8 0.0 0.08 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|305664052|ref|YP_003860340.1| - 0.032 14.1 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|305664052|ref|YP_003860340.1| - 0.035 14.0 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|305664052|ref|YP_003860340.1| - 0.078 13.0 0.0 0.2 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|305664052|ref|YP_003860340.1| - 0.079 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|305664052|ref|YP_003860340.1| - 0.091 13.2 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|305664052|ref|YP_003860340.1| - 0.12 13.0 0.0 0.4 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|305664052|ref|YP_003860340.1| - 0.13 12.0 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|305664052|ref|YP_003860340.1| - 0.14 11.3 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase ResIII PF04851.15 gi|305664052|ref|YP_003860340.1| - 0.18 11.8 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit T2SSF PF00482.23 gi|305664053|ref|YP_003860341.1| - 3.2e-11 43.3 0.4 3.2e-11 43.3 0.4 3.4 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F DUF3262 PF11660.8 gi|305664053|ref|YP_003860341.1| - 0.28 11.6 5.4 1.2 9.6 5.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3262) T2SSF PF00482.23 gi|305664054|ref|YP_003860342.1| - 4.2e-10 39.6 0.7 4.2e-10 39.6 0.7 2.5 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F HAD_2 PF13419.6 gi|305664055|ref|YP_003860343.1| - 5.9e-17 62.3 0.0 1e-16 61.5 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|305664055|ref|YP_003860343.1| - 1.7e-09 38.3 0.0 6.6e-08 33.1 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|305664055|ref|YP_003860343.1| - 6.5e-06 26.1 0.0 1.1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HTH_19 PF12844.7 gi|305664055|ref|YP_003860343.1| - 0.00046 20.1 1.0 0.058 13.4 0.1 3.7 3 1 1 4 4 4 1 Helix-turn-helix domain MazG-like PF12643.7 gi|305664055|ref|YP_003860343.1| - 0.0092 16.2 0.0 0.063 13.5 0.0 2.2 2 0 0 2 2 2 1 MazG-like family HTH_3 PF01381.22 gi|305664055|ref|YP_003860343.1| - 0.013 15.5 0.0 0.093 12.8 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix BDV_M PF16520.5 gi|305664055|ref|YP_003860343.1| - 0.069 13.5 0.1 4.2 7.8 0.0 2.4 2 0 0 2 2 2 0 ssRNA-binding matrix protein of Bornaviridae OrfB_Zn_ribbon PF07282.11 gi|305664056|ref|YP_003860344.1| - 4e-20 71.5 0.2 1.3e-19 69.9 0.1 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|305664056|ref|YP_003860344.1| - 0.11 12.4 0.6 0.28 11.2 0.6 1.6 1 0 0 1 1 1 0 zinc-ribbons DUF2039 PF10217.9 gi|305664056|ref|YP_003860344.1| - 0.15 12.4 0.8 0.54 10.6 0.3 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) FYVE PF01363.21 gi|305664056|ref|YP_003860344.1| - 0.3 11.3 1.9 0.82 9.8 1.9 1.8 1 1 0 1 1 1 0 FYVE zinc finger zf-C4_Topoisom PF01396.19 gi|305664056|ref|YP_003860344.1| - 2.7 7.9 6.1 1.1 9.0 0.6 2.5 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger CYTH PF01928.21 gi|305664057|ref|YP_003860345.1| - 4.1e-27 95.3 0.2 4.9e-27 95.0 0.2 1.1 1 0 0 1 1 1 1 CYTH domain Phos_pyr_kin PF08543.12 gi|305664058|ref|YP_003860346.1| - 1.6e-93 312.7 0.1 2.2e-93 312.2 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|305664058|ref|YP_003860346.1| - 2.4e-62 209.4 2.0 5.2e-62 208.3 2.0 1.6 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|305664058|ref|YP_003860346.1| - 3.2e-09 36.5 0.0 5.8e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 pfkB family carbohydrate kinase ParE_toxin PF05016.15 gi|305664060|ref|YP_003860348.1| - 0.0062 17.1 0.0 0.0064 17.1 0.0 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE DUF4065 PF13274.6 gi|305664061|ref|YP_003860349.1| - 2.2e-13 51.1 0.6 3.1e-13 50.6 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4065) CitG PF01874.16 gi|305664064|ref|YP_003860352.1| - 4.2e-52 177.5 0.0 4.7e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Parvo_NS1 PF01057.17 gi|305664064|ref|YP_003860352.1| - 0.1 11.6 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF1908 PF08926.11 gi|305664064|ref|YP_003860352.1| - 0.11 11.5 0.1 0.16 11.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1908) FTA4 PF13093.6 gi|305664067|ref|YP_003860355.1| - 0.0003 20.7 2.0 0.026 14.4 1.0 2.0 2 0 0 2 2 2 1 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 GOLGA2L5 PF15070.6 gi|305664067|ref|YP_003860355.1| - 0.0026 16.5 1.9 0.0029 16.4 1.9 1.0 1 0 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 Retrotran_gag_2 PF14223.6 gi|305664067|ref|YP_003860355.1| - 0.0038 16.9 1.1 0.014 15.1 0.3 1.9 1 1 0 2 2 2 1 gag-polypeptide of LTR copia-type Spc24 PF08286.11 gi|305664067|ref|YP_003860355.1| - 0.0049 17.1 0.6 1 9.6 0.0 2.1 2 0 0 2 2 2 1 Spc24 subunit of Ndc80 FUSC PF04632.12 gi|305664067|ref|YP_003860355.1| - 0.024 13.2 0.1 0.026 13.1 0.1 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Prefoldin PF02996.17 gi|305664067|ref|YP_003860355.1| - 0.027 14.4 4.0 0.92 9.4 0.1 2.2 2 0 0 2 2 2 0 Prefoldin subunit kleA_kleC PF17383.2 gi|305664067|ref|YP_003860355.1| - 0.032 14.5 1.1 0.078 13.3 0.4 1.9 2 0 0 2 2 2 0 Uncharacterized KorC regulated protein A DUF4988 PF16378.5 gi|305664067|ref|YP_003860355.1| - 0.072 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF3450 PF11932.8 gi|305664067|ref|YP_003860355.1| - 0.082 12.2 2.3 5.2 6.3 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Tropomyosin_1 PF12718.7 gi|305664067|ref|YP_003860355.1| - 0.084 13.0 4.9 0.37 10.9 2.2 2.1 2 0 0 2 2 2 0 Tropomyosin like MerR-DNA-bind PF09278.11 gi|305664067|ref|YP_003860355.1| - 0.1 13.2 3.5 0.27 11.8 0.1 2.3 2 0 0 2 2 2 0 MerR, DNA binding LUC7 PF03194.15 gi|305664067|ref|YP_003860355.1| - 0.12 12.0 2.5 2.7 7.6 2.5 2.0 1 1 0 1 1 1 0 LUC7 N_terminus MutS_IV PF05190.18 gi|305664067|ref|YP_003860355.1| - 0.36 11.2 3.7 2.2 8.7 2.1 2.1 2 0 0 2 2 2 0 MutS family domain IV YabA PF06156.13 gi|305664067|ref|YP_003860355.1| - 0.69 10.6 3.0 5.7 7.6 1.0 2.0 2 0 0 2 2 2 0 Initiation control protein YabA ZapB PF06005.12 gi|305664067|ref|YP_003860355.1| - 3.4 8.2 11.5 19 5.8 0.4 2.5 2 1 0 2 2 2 0 Cell division protein ZapB CarboxypepD_reg PF13620.6 gi|305664068|ref|YP_003860356.1| - 4.1e-07 30.2 0.4 0.00024 21.3 0.0 4.3 4 0 0 4 4 4 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|305664068|ref|YP_003860356.1| - 0.034 14.1 0.0 0.17 11.9 0.0 2.2 1 0 0 1 1 1 0 CarboxypepD_reg-like domain DUF3244 PF11589.8 gi|305664068|ref|YP_003860356.1| - 0.053 13.6 5.0 0.077 13.1 1.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3244) bMG6 PF17962.1 gi|305664068|ref|YP_003860356.1| - 0.13 12.4 0.0 5.3 7.2 0.0 3.1 3 0 0 3 3 3 0 Bacterial macroglobulin domain 6 DUF2576 PF10845.8 gi|305664068|ref|YP_003860356.1| - 0.23 11.1 0.2 0.45 10.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2576) SpaA PF17802.1 gi|305664068|ref|YP_003860356.1| - 0.49 10.8 2.8 1.7 9.0 0.0 3.2 4 0 0 4 4 4 0 Prealbumin-like fold domain T2SSE PF00437.20 gi|305664069|ref|YP_003860357.1| - 2.2e-49 168.0 0.0 5.7e-49 166.6 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|305664069|ref|YP_003860357.1| - 0.0001 22.8 0.0 0.00028 21.4 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|305664069|ref|YP_003860357.1| - 0.00059 19.5 0.2 0.0012 18.5 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|305664069|ref|YP_003860357.1| - 0.0076 16.6 0.0 0.017 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|305664069|ref|YP_003860357.1| - 0.018 14.7 0.4 0.036 13.7 0.2 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|305664069|ref|YP_003860357.1| - 0.039 14.5 0.3 0.039 14.5 0.3 1.9 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|305664069|ref|YP_003860357.1| - 0.083 12.4 0.1 0.15 11.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|305664069|ref|YP_003860357.1| - 0.12 11.6 0.0 0.32 10.2 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|305664069|ref|YP_003860357.1| - 0.15 12.5 0.3 0.86 10.0 0.0 2.4 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|305664069|ref|YP_003860357.1| - 0.17 11.2 0.1 0.38 10.1 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_30 PF13604.6 gi|305664069|ref|YP_003860357.1| - 0.22 11.2 0.2 0.45 10.2 0.2 1.4 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|305664069|ref|YP_003860357.1| - 0.46 10.5 3.7 0.79 9.8 0.8 2.5 2 1 1 3 3 3 0 Helicase HerA, central domain T2SSF PF00482.23 gi|305664070|ref|YP_003860358.1| - 4.2e-18 65.5 5.5 8.7e-11 41.9 0.6 4.5 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F Pilin_N PF07790.11 gi|305664072|ref|YP_003860360.1| - 7e-06 26.9 1.2 0.00029 21.7 0.5 2.2 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal TIG PF01833.24 gi|305664072|ref|YP_003860360.1| - 0.034 14.2 0.1 0.15 12.2 0.1 2.1 1 1 0 1 1 1 0 IPT/TIG domain DUF1573 PF07610.11 gi|305664072|ref|YP_003860360.1| - 0.041 13.9 0.2 0.065 13.3 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1573) FixG_C PF11614.8 gi|305664072|ref|YP_003860360.1| - 0.12 12.6 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF5412 PF17428.2 gi|305664072|ref|YP_003860360.1| - 0.22 11.4 0.5 11 5.9 0.0 2.4 2 1 0 2 2 2 0 Family of unknown function (DUF5412) DUF4750 PF15938.5 gi|305664072|ref|YP_003860360.1| - 6.9 6.4 7.6 11 5.8 7.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4750) Kelch_6 PF13964.6 gi|305664074|ref|YP_003860362.1| - 0.0002 21.5 10.9 2.8 8.3 0.2 5.8 6 0 0 6 6 6 3 Kelch motif DUF5060 PF16586.5 gi|305664074|ref|YP_003860362.1| - 0.12 12.7 0.1 7.3 7.0 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5060) PQQ_3 PF13570.6 gi|305664074|ref|YP_003860362.1| - 1.9 9.1 7.3 7.7 7.1 0.0 4.6 5 0 0 5 5 5 0 PQQ-like domain Abhydro_lipase PF04083.16 gi|305664078|ref|YP_003860366.1| - 0.0087 15.6 0.1 0.02 14.5 0.1 1.6 1 0 0 1 1 1 1 Partial alpha/beta-hydrolase lipase region LT-IIB PF06453.11 gi|305664078|ref|YP_003860366.1| - 0.022 14.7 0.3 0.068 13.1 0.3 1.9 1 0 0 1 1 1 0 Type II heat-labile enterotoxin , B subunit (LT-IIB) FlgO PF17680.1 gi|305664078|ref|YP_003860366.1| - 0.16 11.7 0.1 0.31 10.8 0.1 1.4 1 0 0 1 1 1 0 FlgO protein Adenylsucc_synt PF00709.21 gi|305664080|ref|YP_003860368.1| - 2.9e-68 230.7 0.1 7.8e-36 123.9 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase DAO PF01266.24 gi|305664081|ref|YP_003860369.1| - 7.3e-12 45.5 0.1 1.8e-06 27.8 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|305664081|ref|YP_003860369.1| - 7.6e-10 38.5 0.0 7.4e-06 25.4 0.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|305664081|ref|YP_003860369.1| - 2e-06 27.2 2.3 0.0026 16.9 0.1 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|305664081|ref|YP_003860369.1| - 2.1e-06 27.1 2.1 7e-06 25.4 0.1 2.4 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.17 gi|305664081|ref|YP_003860369.1| - 0.00024 20.4 0.4 0.00049 19.4 0.1 1.6 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|305664081|ref|YP_003860369.1| - 0.00029 21.0 2.1 0.00088 19.5 0.4 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|305664081|ref|YP_003860369.1| - 0.0011 17.8 0.0 0.0099 14.6 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.14 gi|305664081|ref|YP_003860369.1| - 0.0023 16.9 0.1 0.0034 16.3 0.1 1.2 1 0 0 1 1 1 1 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|305664081|ref|YP_003860369.1| - 0.0036 16.6 0.8 0.051 12.8 0.1 2.9 3 1 1 4 4 4 1 FAD binding domain Lycopene_cycl PF05834.12 gi|305664081|ref|YP_003860369.1| - 0.0091 15.1 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|305664081|ref|YP_003860369.1| - 0.011 15.0 0.1 2.4 7.3 0.1 3.1 4 0 0 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|305664081|ref|YP_003860369.1| - 0.028 13.7 0.9 0.21 10.8 0.1 2.4 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|305664081|ref|YP_003860369.1| - 0.043 13.8 0.0 0.37 10.8 0.0 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|305664081|ref|YP_003860369.1| - 0.084 13.4 0.5 6.3 7.4 0.5 3.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF4120 PF13496.6 gi|305664081|ref|YP_003860369.1| - 0.11 12.9 0.0 0.27 11.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4120) PALP PF00291.25 gi|305664081|ref|YP_003860369.1| - 0.14 11.6 0.0 0.46 9.9 0.0 1.9 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme FAD_oxidored PF12831.7 gi|305664081|ref|YP_003860369.1| - 0.18 11.2 1.0 0.37 10.1 0.6 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase Glutaredoxin PF00462.24 gi|305664082|ref|YP_003860370.1| - 6.3e-05 23.1 0.0 0.00011 22.4 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin ATPase_2 PF01637.18 gi|305664083|ref|YP_003860371.1| - 1.9e-48 165.4 0.0 2.8e-48 164.9 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|305664083|ref|YP_003860371.1| - 2.2e-05 23.8 0.0 3.3e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.6 gi|305664083|ref|YP_003860371.1| - 6e-05 23.5 0.0 0.0001 22.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|305664083|ref|YP_003860371.1| - 0.00034 21.1 0.0 0.00089 19.7 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|305664083|ref|YP_003860371.1| - 0.0025 18.1 0.0 0.0043 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|305664083|ref|YP_003860371.1| - 0.004 16.9 0.0 0.0059 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|305664083|ref|YP_003860371.1| - 0.013 15.5 0.0 0.028 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|305664083|ref|YP_003860371.1| - 0.013 15.8 0.0 0.026 14.9 0.0 1.6 2 0 0 2 2 1 0 RNA helicase ATPase PF06745.13 gi|305664083|ref|YP_003860371.1| - 0.028 13.8 0.0 0.05 12.9 0.0 1.4 1 0 0 1 1 1 0 KaiC NACHT PF05729.12 gi|305664083|ref|YP_003860371.1| - 0.032 14.1 0.0 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.15 gi|305664083|ref|YP_003860371.1| - 0.035 14.0 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|305664083|ref|YP_003860371.1| - 0.043 13.5 0.0 0.078 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|305664083|ref|YP_003860371.1| - 0.055 13.7 0.1 0.2 11.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 gi|305664083|ref|YP_003860371.1| - 0.058 12.8 0.1 0.086 12.3 0.1 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein Bac_DnaA PF00308.18 gi|305664083|ref|YP_003860371.1| - 0.058 13.2 0.1 0.12 12.2 0.0 1.5 2 0 0 2 2 2 0 Bacterial dnaA protein AChE_tetra PF08674.10 gi|305664083|ref|YP_003860371.1| - 0.1 12.3 1.2 0.27 10.9 1.2 1.7 1 0 0 1 1 1 0 Acetylcholinesterase tetramerisation domain AAA_18 PF13238.6 gi|305664083|ref|YP_003860371.1| - 0.11 13.0 0.0 0.28 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|305664083|ref|YP_003860371.1| - 0.13 12.7 0.0 0.29 11.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|305664083|ref|YP_003860371.1| - 0.13 12.7 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|305664083|ref|YP_003860371.1| - 0.13 11.4 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_5 PF07728.14 gi|305664083|ref|YP_003860371.1| - 0.19 11.7 0.0 0.73 9.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF86 PF01934.17 gi|305664084|ref|YP_003860372.1| - 9.4e-20 70.7 0.3 2e-19 69.6 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|305664084|ref|YP_003860372.1| - 1.7e-10 40.9 0.4 5.4e-10 39.2 0.2 2.0 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase ATPase_2 PF01637.18 gi|305664085|ref|YP_003860373.1| - 7.5e-53 179.8 0.0 1.1e-52 179.2 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|305664085|ref|YP_003860373.1| - 0.00011 21.5 0.0 0.00018 20.8 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain PBECR2 PF18810.1 gi|305664085|ref|YP_003860373.1| - 0.00015 22.0 0.3 0.00036 20.8 0.3 1.6 1 0 0 1 1 1 1 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 AAA_16 PF13191.6 gi|305664085|ref|YP_003860373.1| - 0.00022 21.7 0.0 0.00058 20.3 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain PhoH PF02562.16 gi|305664085|ref|YP_003860373.1| - 0.0025 17.3 0.1 0.071 12.5 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 gi|305664085|ref|YP_003860373.1| - 0.004 16.9 0.0 0.0063 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|305664085|ref|YP_003860373.1| - 0.0085 15.8 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|305664085|ref|YP_003860373.1| - 0.01 15.2 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|305664085|ref|YP_003860373.1| - 0.018 14.9 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain KAP_NTPase PF07693.14 gi|305664085|ref|YP_003860373.1| - 0.026 13.8 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA PF00004.29 gi|305664085|ref|YP_003860373.1| - 0.031 14.7 0.0 0.072 13.5 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|305664085|ref|YP_003860373.1| - 0.045 14.0 0.0 0.084 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|305664085|ref|YP_003860373.1| - 0.071 13.5 0.0 0.17 12.3 0.0 1.7 1 1 0 1 1 1 0 RNA helicase DAP3 PF10236.9 gi|305664085|ref|YP_003860373.1| - 0.092 11.9 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 G-alpha PF00503.20 gi|305664085|ref|YP_003860373.1| - 0.17 11.0 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_23 PF13476.6 gi|305664085|ref|YP_003860373.1| - 0.23 12.0 0.0 0.41 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|305664086|ref|YP_003860374.1| - 7.5e-52 176.6 0.0 1.1e-51 176.1 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|305664086|ref|YP_003860374.1| - 4.3e-05 23.9 0.0 0.00017 22.0 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|305664086|ref|YP_003860374.1| - 0.00021 20.6 0.0 0.00088 18.5 0.0 1.9 2 0 0 2 2 2 1 NB-ARC domain AAA_22 PF13401.6 gi|305664086|ref|YP_003860374.1| - 0.00026 21.3 0.0 0.00045 20.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305664086|ref|YP_003860374.1| - 0.00035 21.0 0.0 0.00062 20.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|305664086|ref|YP_003860374.1| - 0.002 17.9 0.3 0.0066 16.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|305664086|ref|YP_003860374.1| - 0.0032 18.0 0.0 0.0081 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|305664086|ref|YP_003860374.1| - 0.0035 17.1 0.0 0.0049 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|305664086|ref|YP_003860374.1| - 0.0099 16.3 0.0 0.029 14.7 0.0 1.8 2 0 0 2 2 1 1 RNA helicase AAA_14 PF13173.6 gi|305664086|ref|YP_003860374.1| - 0.018 15.1 0.2 0.044 13.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain DAP3 PF10236.9 gi|305664086|ref|YP_003860374.1| - 0.063 12.4 0.0 0.096 11.8 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 NTPase_1 PF03266.15 gi|305664086|ref|YP_003860374.1| - 0.064 13.2 0.0 0.19 11.6 0.0 1.8 1 0 0 1 1 1 0 NTPase ATP_bind_1 PF03029.17 gi|305664086|ref|YP_003860374.1| - 0.069 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|305664086|ref|YP_003860374.1| - 0.071 13.4 0.0 0.15 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|305664086|ref|YP_003860374.1| - 0.087 13.4 0.0 0.21 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|305664086|ref|YP_003860374.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|305664086|ref|YP_003860374.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin AAA_PrkA PF08298.11 gi|305664086|ref|YP_003860374.1| - 0.12 11.3 0.0 0.19 10.6 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain TsaE PF02367.17 gi|305664086|ref|YP_003860374.1| - 0.15 12.1 0.0 2.5 8.1 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE G-alpha PF00503.20 gi|305664086|ref|YP_003860374.1| - 0.17 11.0 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_17 PF13207.6 gi|305664086|ref|YP_003860374.1| - 0.27 11.6 1.0 0.64 10.4 0.1 2.2 2 1 0 2 2 1 0 AAA domain Asp_protease_2 PF13650.6 gi|305664087|ref|YP_003860375.1| - 6.1e-05 23.6 0.0 0.00058 20.5 0.0 2.0 2 0 0 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|305664087|ref|YP_003860375.1| - 0.00035 21.1 0.0 0.00053 20.5 0.0 1.4 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease DUF104 PF01954.16 gi|305664088|ref|YP_003860376.1| - 8.2e-23 80.6 5.3 9.1e-23 80.5 5.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Aminotran_3 PF00202.21 gi|305664089|ref|YP_003860377.1| - 1.6e-58 198.3 0.0 2.2e-58 197.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|305664089|ref|YP_003860377.1| - 0.0095 15.1 0.0 4 6.5 0.0 2.3 2 0 0 2 2 2 2 Aminotransferase class I and II Glyco_hydro_4 PF02056.16 gi|305664089|ref|YP_003860377.1| - 0.2 11.2 0.0 0.36 10.4 0.0 1.3 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase Gp_dh_N PF00044.24 gi|305664090|ref|YP_003860378.1| - 0.00039 20.7 1.5 0.0023 18.2 0.9 2.4 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|305664090|ref|YP_003860378.1| - 0.069 12.5 0.3 0.15 11.4 0.3 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|305664090|ref|YP_003860378.1| - 0.072 13.7 2.4 0.13 12.8 0.5 2.6 2 2 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent PAP2 PF01569.21 gi|305664091|ref|YP_003860379.1| - 1.2e-15 57.4 7.5 1.2e-15 57.4 7.5 3.8 2 1 2 4 4 4 1 PAP2 superfamily PAP2_3 PF14378.6 gi|305664091|ref|YP_003860379.1| - 7.1e-05 22.6 5.9 7.1e-05 22.6 5.9 2.5 2 1 0 2 2 2 1 PAP2 superfamily DUF2238 PF09997.9 gi|305664091|ref|YP_003860379.1| - 0.073 12.9 0.2 0.073 12.9 0.2 2.8 2 1 2 4 4 4 0 Predicted membrane protein (DUF2238) Y1_Tnp PF01797.16 gi|305664092|ref|YP_003860380.1| - 0.085 13.0 0.2 0.11 12.6 0.1 1.3 1 1 0 1 1 1 0 Transposase IS200 like PAS_10 PF13596.6 gi|305664092|ref|YP_003860380.1| - 0.12 13.0 0.0 0.18 12.4 0.0 1.4 1 1 0 1 1 1 0 PAS domain MFS_1 PF07690.16 gi|305664093|ref|YP_003860381.1| - 0.00032 19.8 46.8 0.0017 17.4 20.4 2.5 1 1 0 2 2 2 2 Major Facilitator Superfamily Glyoxalase_4 PF13669.6 gi|305664094|ref|YP_003860382.1| - 3.5e-24 85.2 0.0 4.6e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|305664094|ref|YP_003860382.1| - 0.0057 17.4 0.0 0.0082 16.9 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|305664094|ref|YP_003860382.1| - 0.0067 16.6 0.0 0.015 15.5 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|305664094|ref|YP_003860382.1| - 0.092 12.9 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase-like domain AIRC PF00731.20 gi|305664095|ref|YP_003860383.1| - 9e-20 70.8 4.7 1.5e-19 70.1 4.7 1.3 1 0 0 1 1 1 1 AIR carboxylase GTP-bdg_N PF13167.6 gi|305664095|ref|YP_003860383.1| - 0.0084 16.8 0.5 0.27 11.9 0.1 2.3 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal STAS PF01740.21 gi|305664095|ref|YP_003860383.1| - 0.045 13.4 0.7 4.5 6.9 0.1 2.3 2 0 0 2 2 2 0 STAS domain Glycos_transf_1 PF00534.20 gi|305664095|ref|YP_003860383.1| - 0.094 12.2 0.4 1.5 8.3 0.0 2.5 3 0 0 3 3 3 0 Glycosyl transferases group 1 PrpR_N PF06506.11 gi|305664095|ref|YP_003860383.1| - 0.1 12.2 3.5 0.22 11.1 0.4 2.5 1 1 0 2 2 2 0 Propionate catabolism activator Methyltransf_FA PF12248.8 gi|305664095|ref|YP_003860383.1| - 0.15 12.4 0.0 0.25 11.7 0.0 1.4 1 0 0 1 1 1 0 Farnesoic acid 0-methyl transferase Succ_CoA_lig PF13607.6 gi|305664095|ref|YP_003860383.1| - 0.16 11.8 0.8 0.36 10.6 0.2 1.8 2 0 0 2 2 2 0 Succinyl-CoA ligase like flavodoxin domain Fe-ADH PF00465.19 gi|305664095|ref|YP_003860383.1| - 0.99 8.2 4.0 0.25 10.1 0.9 1.5 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase DUF111 PF01969.17 gi|305664096|ref|YP_003860384.1| - 5.2e-106 354.9 0.0 5.9e-106 354.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 IFT46_B_C PF12317.8 gi|305664096|ref|YP_003860384.1| - 0.13 12.0 0.0 0.35 10.6 0.0 1.7 1 1 0 1 1 1 0 Intraflagellar transport complex B protein 46 C terminal Flavi_DEAD PF07652.14 gi|305664096|ref|YP_003860384.1| - 0.19 11.7 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 Flavivirus DEAD domain DUF362 PF04015.12 gi|305664097|ref|YP_003860385.1| - 1e-30 107.5 0.0 1.5e-30 107.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) LacAB_rpiB PF02502.18 gi|305664098|ref|YP_003860386.1| - 6.8e-37 126.6 0.0 7.5e-37 126.4 0.0 1.0 1 0 0 1 1 1 1 Ribose/Galactose Isomerase Gly_rich_SFCGS PF14272.6 gi|305664098|ref|YP_003860386.1| - 0.071 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Glycine-rich SFCGS MethyltransfD12 PF02086.15 gi|305664099|ref|YP_003860387.1| - 0.045 13.4 0.1 0.064 12.9 0.1 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase PALP PF00291.25 gi|305664101|ref|YP_003860389.1| - 4e-46 157.8 0.0 5.2e-46 157.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Aldo_ket_red PF00248.21 gi|305664102|ref|YP_003860390.1| - 3.7e-68 229.9 0.0 4.2e-68 229.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Inositol_P PF00459.25 gi|305664103|ref|YP_003860391.1| - 6.4e-15 55.4 0.0 6e-08 32.5 0.0 2.0 2 0 0 2 2 2 2 Inositol monophosphatase family FBPase PF00316.20 gi|305664103|ref|YP_003860391.1| - 1.9e-06 27.5 0.0 2.8e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Chromate_transp PF02417.15 gi|305664104|ref|YP_003860392.1| - 8.5e-49 165.7 19.4 9.9e-49 165.5 19.4 1.0 1 0 0 1 1 1 1 Chromate transporter SLATT_3 PF18184.1 gi|305664104|ref|YP_003860392.1| - 1.4 9.1 3.4 0.48 10.6 0.8 1.5 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 PALP PF00291.25 gi|305664105|ref|YP_003860393.1| - 1.5e-42 146.0 0.0 2e-42 145.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Gp45_2 PF17470.2 gi|305664105|ref|YP_003860393.1| - 0.16 12.0 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 Phage gene product 45.2 Trp_syntA PF00290.20 gi|305664106|ref|YP_003860394.1| - 1.1e-29 103.1 0.1 1.4e-29 102.8 0.1 1.1 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.19 gi|305664106|ref|YP_003860394.1| - 0.0016 17.8 0.1 0.0027 17.1 0.1 1.4 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.21 gi|305664106|ref|YP_003860394.1| - 0.016 14.7 1.0 0.023 14.2 0.2 1.6 2 0 0 2 2 2 0 Histidine biosynthesis protein Glycos_transf_3 PF00591.21 gi|305664107|ref|YP_003860395.1| - 2.6e-73 246.7 0.0 3.2e-73 246.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|305664107|ref|YP_003860395.1| - 3e-15 55.8 0.0 6e-15 54.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.22 gi|305664108|ref|YP_003860396.1| - 1.3e-27 96.8 0.0 1.5e-27 96.6 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Chorismate_bind PF00425.18 gi|305664109|ref|YP_003860397.1| - 7.2e-90 301.0 0.0 9.3e-90 300.7 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|305664109|ref|YP_003860397.1| - 1.4e-07 31.8 0.3 3.4e-07 30.6 0.3 1.7 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region Zfx_Zfy_act PF04704.13 gi|305664109|ref|YP_003860397.1| - 0.17 11.0 0.0 0.25 10.4 0.0 1.1 1 0 0 1 1 1 0 Zfx / Zfy transcription activation region GATase PF00117.28 gi|305664110|ref|YP_003860398.1| - 1.8e-46 158.3 0.0 2.1e-46 158.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|305664110|ref|YP_003860398.1| - 1.9e-11 44.1 0.2 9.2e-11 41.9 0.2 1.9 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|305664110|ref|YP_003860398.1| - 0.076 12.8 0.1 0.1 12.5 0.1 1.3 1 1 0 1 1 1 0 SNO glutamine amidotransferase family IGPS PF00218.21 gi|305664111|ref|YP_003860399.1| - 3.3e-68 229.6 0.1 4.1e-68 229.3 0.1 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|305664111|ref|YP_003860399.1| - 2.3e-05 23.6 0.0 0.00042 19.5 0.0 2.0 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.14 gi|305664111|ref|YP_003860399.1| - 7.8e-05 21.9 0.5 0.00014 21.2 0.5 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.19 gi|305664111|ref|YP_003860399.1| - 0.0038 17.0 1.1 0.007 16.2 1.0 1.5 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain DHO_dh PF01180.21 gi|305664111|ref|YP_003860399.1| - 0.0051 16.1 1.0 0.0065 15.7 1.0 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|305664111|ref|YP_003860399.1| - 0.0087 15.6 0.2 0.037 13.5 0.0 1.9 1 1 0 2 2 2 1 Histidine biosynthesis protein DUF871 PF05913.11 gi|305664111|ref|YP_003860399.1| - 0.059 12.6 1.2 0.092 11.9 1.2 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF871) PI3K_rbd PF00794.18 gi|305664111|ref|YP_003860399.1| - 0.085 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 PI3-kinase family, ras-binding domain Asp_protease_2 PF13650.6 gi|305664112|ref|YP_003860400.1| - 4.2e-06 27.3 0.0 4.2e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|305664112|ref|YP_003860400.1| - 0.00039 20.9 0.0 0.00043 20.8 0.0 1.1 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Peptidase_A3 PF02160.15 gi|305664112|ref|YP_003860400.1| - 0.039 13.4 0.0 0.04 13.4 0.0 1.0 1 0 0 1 1 1 0 Cauliflower mosaic virus peptidase (A3) RVP PF00077.20 gi|305664112|ref|YP_003860400.1| - 0.064 13.6 0.1 0.071 13.4 0.1 1.2 1 0 0 1 1 1 0 Retroviral aspartyl protease PIN PF01850.21 gi|305664114|ref|YP_003860402.1| - 1.8e-13 51.1 0.5 2.3e-13 50.7 0.5 1.1 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|305664114|ref|YP_003860402.1| - 0.00043 20.5 0.3 0.00056 20.1 0.3 1.1 1 0 0 1 1 1 1 PIN domain PhoPQ_related PF10142.9 gi|305664115|ref|YP_003860403.1| - 0.032 12.9 0.0 0.032 12.9 0.0 1.0 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein AMP-binding_C PF13193.6 gi|305664115|ref|YP_003860403.1| - 0.12 13.4 0.0 0.17 12.8 0.0 1.3 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain Aconitase_C PF00694.19 gi|305664116|ref|YP_003860404.1| - 9.3e-21 74.5 0.0 1.4e-20 73.9 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|305664116|ref|YP_003860404.1| - 0.0014 18.3 0.8 0.094 12.3 0.8 2.3 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus S4 PF01479.25 gi|305664116|ref|YP_003860404.1| - 1.8 8.3 4.1 38 4.1 0.2 3.4 2 1 1 3 3 3 0 S4 domain Aconitase PF00330.20 gi|305664117|ref|YP_003860405.1| - 8.6e-79 265.7 1.7 1.6e-76 258.2 1.7 2.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|305664117|ref|YP_003860405.1| - 0.00039 19.3 0.0 0.00061 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Peptidase_S32 PF05579.13 gi|305664117|ref|YP_003860405.1| - 0.011 14.9 0.0 0.025 13.8 0.0 1.5 1 0 0 1 1 1 0 Equine arteritis virus serine endopeptidase S32 Transketolase_N PF00456.21 gi|305664118|ref|YP_003860406.1| - 6.5e-41 140.4 0.0 1.9e-40 138.8 0.0 1.6 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|305664118|ref|YP_003860406.1| - 3.7e-09 36.2 0.5 1.3e-06 27.9 0.7 2.8 1 1 0 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|305664118|ref|YP_003860406.1| - 1.6e-08 33.8 0.0 2.5e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|305664118|ref|YP_003860406.1| - 1e-07 31.9 0.1 2.3e-06 27.5 0.1 2.6 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transket_pyr PF02779.24 gi|305664119|ref|YP_003860407.1| - 1.4e-36 125.8 0.0 2.5e-36 125.0 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|305664119|ref|YP_003860407.1| - 7.4e-31 106.6 0.2 1.5e-30 105.6 0.2 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|305664119|ref|YP_003860407.1| - 0.0033 17.7 0.4 0.0075 16.6 0.4 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II AIRS PF00586.24 gi|305664119|ref|YP_003860407.1| - 0.004 17.8 0.2 0.016 15.8 0.1 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain PDH PF02153.17 gi|305664120|ref|YP_003860408.1| - 2.7e-19 69.2 0.0 4.4e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|305664120|ref|YP_003860408.1| - 8e-14 52.0 0.0 2.2e-13 50.6 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CM_2 PF01817.21 gi|305664120|ref|YP_003860408.1| - 3.5e-13 49.7 3.4 1e-12 48.2 3.4 1.8 1 0 0 1 1 1 1 Chorismate mutase type II NAD_binding_2 PF03446.15 gi|305664120|ref|YP_003860408.1| - 6.1e-07 29.8 0.0 1.2e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|305664120|ref|YP_003860408.1| - 1.1e-05 25.6 0.0 2.5e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|305664120|ref|YP_003860408.1| - 6.5e-05 22.6 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|305664120|ref|YP_003860408.1| - 0.00025 21.0 0.0 0.014 15.3 0.1 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|305664120|ref|YP_003860408.1| - 0.0041 16.5 0.0 0.0073 15.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|305664120|ref|YP_003860408.1| - 0.038 14.0 0.0 0.078 13.1 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF2621 PF11084.8 gi|305664120|ref|YP_003860408.1| - 0.087 12.8 0.3 1.3 8.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2621) Crust_neuro_H PF03858.13 gi|305664120|ref|YP_003860408.1| - 0.094 13.5 0.6 0.25 12.2 0.6 1.7 1 0 0 1 1 1 0 Crustacean neurohormone H DAHP_synth_1 PF00793.20 gi|305664121|ref|YP_003860409.1| - 2.3e-73 246.4 0.0 2.9e-73 246.1 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|305664121|ref|YP_003860409.1| - 3.5e-07 29.9 0.1 3.9e-06 26.5 0.1 2.1 1 1 0 1 1 1 1 NeuB family Ad_Cy_reg PF16701.5 gi|305664121|ref|YP_003860409.1| - 0.049 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Adenylate cyclase regulatory domain ComA PF02679.15 gi|305664121|ref|YP_003860409.1| - 0.072 12.5 0.1 3.7 7.0 0.0 2.5 1 1 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) DHQ_synthase PF01761.20 gi|305664122|ref|YP_003860410.1| - 1.8e-89 299.4 0.1 2.2e-89 299.1 0.1 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH PF00465.19 gi|305664122|ref|YP_003860410.1| - 1.1e-11 44.2 0.3 4.5e-09 35.6 0.0 2.5 2 1 0 2 2 2 2 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|305664122|ref|YP_003860410.1| - 3e-08 33.7 0.1 1.4e-07 31.5 0.1 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Shikimate_dh_N PF08501.11 gi|305664123|ref|YP_003860411.1| - 4.9e-22 78.0 0.0 1e-21 76.9 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|305664123|ref|YP_003860411.1| - 6.4e-07 29.5 0.0 9.7e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|305664123|ref|YP_003860411.1| - 0.0066 16.2 0.0 0.0098 15.6 0.0 1.3 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Lig_C PF18330.1 gi|305664123|ref|YP_003860411.1| - 0.011 15.8 0.0 0.34 10.9 0.0 2.3 2 0 0 2 2 2 0 Ligase Pab1020 C-terminal region ApbA PF02558.16 gi|305664123|ref|YP_003860411.1| - 0.012 15.2 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.21 gi|305664123|ref|YP_003860411.1| - 0.043 13.9 0.0 0.072 13.2 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|305664123|ref|YP_003860411.1| - 0.11 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain adh_short PF00106.25 gi|305664123|ref|YP_003860411.1| - 0.14 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Chorismate_synt PF01264.21 gi|305664124|ref|YP_003860412.1| - 4.4e-125 416.7 0.0 5e-125 416.5 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase GHMP_kinases_N PF00288.26 gi|305664125|ref|YP_003860413.1| - 2.3e-12 46.9 0.5 4.9e-12 45.9 0.5 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|305664125|ref|YP_003860413.1| - 4.2e-05 23.8 0.2 0.00014 22.2 0.1 2.0 2 1 0 2 2 2 1 GHMP kinases C terminal EPSP_synthase PF00275.20 gi|305664126|ref|YP_003860414.1| - 2.8e-70 237.1 0.0 3.1e-70 237.0 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DHquinase_I PF01487.15 gi|305664127|ref|YP_003860415.1| - 2.9e-12 47.3 0.0 4.4e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Type I 3-dehydroquinase PilZ PF07238.14 gi|305664127|ref|YP_003860415.1| - 0.077 13.3 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 PilZ domain Pyr_redox_2 PF07992.14 gi|305664128|ref|YP_003860416.1| - 3.6e-25 88.8 2.5 5e-25 88.3 2.5 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|305664128|ref|YP_003860416.1| - 2.3e-10 40.3 2.7 9.3e-08 31.7 0.0 2.5 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|305664128|ref|YP_003860416.1| - 9.1e-08 31.6 5.2 4.8e-06 25.9 2.5 2.8 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.24 gi|305664128|ref|YP_003860416.1| - 3.1e-06 27.0 6.7 0.0004 20.1 3.9 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|305664128|ref|YP_003860416.1| - 3.5e-06 26.4 8.0 8.7e-06 25.1 2.0 2.9 2 1 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|305664128|ref|YP_003860416.1| - 3.6e-06 26.6 1.3 3.6e-06 26.6 1.3 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|305664128|ref|YP_003860416.1| - 7.1e-05 22.2 0.8 0.00039 19.7 0.8 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|305664128|ref|YP_003860416.1| - 0.0013 18.9 0.4 0.0025 18.0 0.4 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|305664128|ref|YP_003860416.1| - 0.0025 16.6 2.1 0.027 13.2 0.9 2.3 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|305664128|ref|YP_003860416.1| - 0.0072 15.4 0.2 0.011 14.8 0.2 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|305664128|ref|YP_003860416.1| - 0.011 15.1 0.3 0.018 14.4 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|305664128|ref|YP_003860416.1| - 0.013 15.5 2.2 0.19 11.7 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|305664128|ref|YP_003860416.1| - 0.014 14.7 0.9 0.022 14.0 0.9 1.3 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.14 gi|305664128|ref|YP_003860416.1| - 0.022 13.7 0.9 0.035 13.0 0.9 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Pyr_redox PF00070.27 gi|305664128|ref|YP_003860416.1| - 0.22 12.1 3.4 3.1 8.4 0.9 3.0 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CPSase_L_D2 PF02786.17 gi|305664129|ref|YP_003860417.1| - 5.8e-95 316.8 0.0 4e-62 209.4 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|305664129|ref|YP_003860417.1| - 2e-31 108.9 0.0 8.1e-31 106.9 0.0 2.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|305664129|ref|YP_003860417.1| - 2.3e-16 59.9 0.0 5.2e-07 29.4 0.0 2.6 3 0 0 3 3 3 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|305664129|ref|YP_003860417.1| - 2.6e-12 46.7 0.0 4.1e-07 29.7 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|305664129|ref|YP_003860417.1| - 4.4e-11 42.7 0.0 1.4e-05 24.8 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.19 gi|305664129|ref|YP_003860417.1| - 7.4e-07 29.1 0.0 0.0054 16.5 0.0 2.4 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|305664129|ref|YP_003860417.1| - 4.2e-06 26.4 0.0 0.054 12.9 0.0 3.0 2 1 0 2 2 2 2 ATP-grasp domain RimK PF08443.11 gi|305664129|ref|YP_003860417.1| - 0.00024 20.8 0.0 0.64 9.6 0.0 2.8 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|305664129|ref|YP_003860417.1| - 0.014 15.4 0.2 1.1 9.3 0.0 2.6 2 0 0 2 2 2 0 ATP-grasp domain Raf1_HTH PF18579.1 gi|305664129|ref|YP_003860417.1| - 0.015 15.0 0.0 0.042 13.6 0.0 1.8 1 0 0 1 1 1 0 Rubisco accumulation factor 1 helix turn helix domain UPF0180 PF03698.13 gi|305664129|ref|YP_003860417.1| - 0.056 13.6 0.0 0.62 10.3 0.1 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) CPSase_sm_chain PF00988.22 gi|305664130|ref|YP_003860418.1| - 5.6e-43 145.8 0.0 8e-43 145.3 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|305664130|ref|YP_003860418.1| - 8.5e-42 143.1 0.0 1.2e-41 142.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|305664130|ref|YP_003860418.1| - 5.6e-10 39.3 0.3 1e-06 28.7 0.1 2.3 1 1 1 2 2 2 2 Peptidase C26 GATase_3 PF07685.14 gi|305664130|ref|YP_003860418.1| - 0.079 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF4735 PF15882.5 gi|305664130|ref|YP_003860418.1| - 0.28 10.6 0.0 0.42 10.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4735) Lyase_1 PF00206.20 gi|305664131|ref|YP_003860419.1| - 2.9e-23 82.7 0.0 4.5e-23 82.1 0.0 1.3 1 0 0 1 1 1 1 Lyase GatB_Yqey PF02637.18 gi|305664131|ref|YP_003860419.1| - 0.066 13.1 0.1 0.17 11.7 0.1 1.7 1 0 0 1 1 1 0 GatB domain Arginosuc_synth PF00764.19 gi|305664132|ref|YP_003860420.1| - 5e-157 523.2 0.1 5.9e-157 522.9 0.1 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.21 gi|305664132|ref|YP_003860420.1| - 4.6e-06 26.5 0.0 6.6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|305664132|ref|YP_003860420.1| - 1.1e-05 25.0 0.1 3.6e-05 23.3 0.1 1.8 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|305664132|ref|YP_003860420.1| - 0.0019 17.1 0.0 0.0035 16.2 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|305664132|ref|YP_003860420.1| - 0.055 13.2 0.0 0.11 12.2 0.0 1.5 1 1 0 1 1 1 0 PP-loop family ACT_7 PF13840.6 gi|305664133|ref|YP_003860421.1| - 7.2e-10 38.5 0.8 1.4e-09 37.6 0.8 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|305664133|ref|YP_003860421.1| - 1.2e-05 25.0 0.8 6.2e-05 22.7 0.1 2.6 3 0 0 3 3 3 1 ACT domain BPD_transp_2 PF02653.16 gi|305664134|ref|YP_003860422.1| - 7e-37 127.0 36.0 8.4e-37 126.8 36.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.10 gi|305664134|ref|YP_003860422.1| - 0.013 15.3 0.1 0.029 14.1 0.1 1.6 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 Trp_oprn_chp PF09534.10 gi|305664134|ref|YP_003860422.1| - 2.8 7.7 7.0 16 5.2 0.3 2.6 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) BPD_transp_2 PF02653.16 gi|305664135|ref|YP_003860423.1| - 1.5e-27 96.5 41.1 1.7e-27 96.2 41.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ANF_receptor PF01094.28 gi|305664136|ref|YP_003860424.1| - 8.2e-31 107.4 0.0 1.1e-30 106.9 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|305664136|ref|YP_003860424.1| - 3.7e-27 95.9 0.4 7.3e-27 94.9 0.4 1.5 1 1 0 1 1 1 1 Periplasmic binding protein LppC PF04348.13 gi|305664136|ref|YP_003860424.1| - 1.2e-10 40.9 0.1 1.6e-10 40.5 0.1 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.6 gi|305664136|ref|YP_003860424.1| - 5.5e-05 22.3 0.0 0.00034 19.7 0.0 2.0 2 0 0 2 2 2 1 Periplasmic binding protein domain PrpR_N PF06506.11 gi|305664136|ref|YP_003860424.1| - 0.064 12.8 0.2 0.24 11.0 0.1 1.9 2 0 0 2 2 2 0 Propionate catabolism activator ABC_tran PF00005.27 gi|305664137|ref|YP_003860425.1| - 9.5e-25 87.7 0.0 1.2e-24 87.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|305664137|ref|YP_003860425.1| - 5.2e-10 39.0 0.1 9.5e-10 38.2 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|305664137|ref|YP_003860425.1| - 3.3e-06 27.8 0.3 6.2e-06 26.9 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|305664137|ref|YP_003860425.1| - 7.8e-06 25.5 0.0 1.5e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|305664137|ref|YP_003860425.1| - 0.00014 21.7 0.0 0.00018 21.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|305664137|ref|YP_003860425.1| - 0.00027 20.8 1.7 0.0017 18.2 0.6 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|305664137|ref|YP_003860425.1| - 0.0043 17.0 0.3 0.0094 15.9 0.1 1.5 2 0 0 2 2 2 1 RsgA GTPase Zeta_toxin PF06414.12 gi|305664137|ref|YP_003860425.1| - 0.0048 16.2 0.0 0.0076 15.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|305664137|ref|YP_003860425.1| - 0.013 15.8 0.0 0.022 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|305664137|ref|YP_003860425.1| - 0.025 15.0 0.0 0.029 14.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|305664137|ref|YP_003860425.1| - 0.036 13.1 0.2 0.061 12.4 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|305664137|ref|YP_003860425.1| - 0.036 13.8 0.0 0.067 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|305664137|ref|YP_003860425.1| - 0.052 13.1 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|305664137|ref|YP_003860425.1| - 0.07 13.1 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain SMC_N PF02463.19 gi|305664137|ref|YP_003860425.1| - 0.094 12.1 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|305664137|ref|YP_003860425.1| - 0.1 13.0 0.1 0.18 12.2 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|305664137|ref|YP_003860425.1| - 0.14 11.8 0.4 0.25 10.9 0.2 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|305664137|ref|YP_003860425.1| - 0.17 11.4 0.1 0.26 10.8 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|305664137|ref|YP_003860425.1| - 0.21 11.7 0.1 0.36 11.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|305664138|ref|YP_003860426.1| - 6.9e-33 114.1 0.0 9.9e-33 113.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305664138|ref|YP_003860426.1| - 1.5e-12 47.9 5.1 2e-06 27.9 1.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305664138|ref|YP_003860426.1| - 4.5e-10 39.3 0.9 0.00053 19.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|305664138|ref|YP_003860426.1| - 1.1e-06 29.3 1.0 1.8e-06 28.6 0.6 1.4 2 0 0 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|305664138|ref|YP_003860426.1| - 3.5e-05 23.7 0.7 5.3e-05 23.1 0.4 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|305664138|ref|YP_003860426.1| - 3.9e-05 23.9 0.2 0.042 14.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|305664138|ref|YP_003860426.1| - 6e-05 22.7 0.1 0.00011 21.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|305664138|ref|YP_003860426.1| - 0.00027 20.9 0.0 0.00054 19.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 gi|305664138|ref|YP_003860426.1| - 0.00054 19.6 0.0 0.00094 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|305664138|ref|YP_003860426.1| - 0.0015 17.4 0.6 0.093 11.5 0.1 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 gi|305664138|ref|YP_003860426.1| - 0.0039 17.2 0.2 0.039 14.0 0.2 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|305664138|ref|YP_003860426.1| - 0.013 15.8 0.0 0.022 15.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 gi|305664138|ref|YP_003860426.1| - 0.015 15.4 0.0 0.025 14.7 0.0 1.5 1 1 0 1 1 1 0 Dynamin family AAA_30 PF13604.6 gi|305664138|ref|YP_003860426.1| - 0.018 14.8 0.2 0.062 13.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|305664138|ref|YP_003860426.1| - 0.024 14.3 0.0 0.04 13.5 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|305664138|ref|YP_003860426.1| - 0.059 13.4 0.1 0.69 10.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|305664138|ref|YP_003860426.1| - 0.089 12.0 0.1 0.25 10.5 0.1 1.8 1 1 0 1 1 1 0 NB-ARC domain NUC130_3NT PF08158.12 gi|305664138|ref|YP_003860426.1| - 0.095 13.0 0.1 0.24 11.7 0.1 1.7 1 0 0 1 1 1 0 NUC130/3NT domain AAA_25 PF13481.6 gi|305664138|ref|YP_003860426.1| - 0.12 12.0 0.2 1.2 8.7 0.1 2.2 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|305664138|ref|YP_003860426.1| - 0.15 12.0 0.1 0.54 10.2 0.0 1.8 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.6 gi|305664138|ref|YP_003860426.1| - 0.15 12.3 0.0 0.35 11.1 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Peptidase_M20 PF01546.28 gi|305664139|ref|YP_003860427.1| - 2.4e-23 82.9 0.0 3.2e-23 82.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|305664139|ref|YP_003860427.1| - 2.8e-05 24.0 0.0 5.1e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|305664139|ref|YP_003860427.1| - 0.0051 16.5 0.0 0.0073 16.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 Aminotran_3 PF00202.21 gi|305664140|ref|YP_003860428.1| - 1.2e-104 350.2 0.0 1.5e-104 349.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III RimK PF08443.11 gi|305664141|ref|YP_003860429.1| - 3.7e-38 131.0 0.1 9.3e-38 129.7 0.0 1.6 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|305664141|ref|YP_003860429.1| - 7.8e-09 35.8 0.0 1.4e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|305664141|ref|YP_003860429.1| - 2.3e-08 33.6 0.0 0.00063 19.1 0.0 2.8 1 1 2 3 3 3 2 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|305664141|ref|YP_003860429.1| - 1.1e-05 25.1 0.0 0.00015 21.4 0.0 2.4 1 1 1 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|305664141|ref|YP_003860429.1| - 0.0026 17.3 0.0 0.0052 16.4 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain Ins134_P3_kin PF05770.11 gi|305664141|ref|YP_003860429.1| - 0.0066 16.0 0.1 2.1 7.8 0.0 2.5 1 1 1 2 2 2 2 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain CPSase_L_D2 PF02786.17 gi|305664141|ref|YP_003860429.1| - 0.011 15.2 0.0 0.035 13.6 0.0 1.8 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 gi|305664141|ref|YP_003860429.1| - 0.039 13.6 0.1 0.44 10.1 0.0 2.5 3 0 0 3 3 3 0 ATP-grasp domain DUF3545 PF12065.8 gi|305664141|ref|YP_003860429.1| - 0.11 12.5 0.1 0.25 11.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3545) Lar_restr_allev PF14354.6 gi|305664142|ref|YP_003860430.1| - 0.011 16.1 0.1 0.013 15.9 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|305664142|ref|YP_003860430.1| - 0.014 14.9 0.8 0.02 14.4 0.8 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zf-IS66 PF13005.7 gi|305664142|ref|YP_003860430.1| - 0.025 15.0 1.3 0.05 14.0 1.1 1.7 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DNA_ligase_ZBD PF03119.16 gi|305664142|ref|YP_003860430.1| - 0.068 13.2 6.7 0.1 12.7 6.7 1.6 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Semialdhyde_dh PF01118.24 gi|305664143|ref|YP_003860431.1| - 1.6e-33 115.7 0.0 8.8e-33 113.3 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|305664143|ref|YP_003860431.1| - 3.7e-11 43.4 0.0 4.9e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Epimerase PF01370.21 gi|305664143|ref|YP_003860431.1| - 0.046 13.2 0.0 0.07 12.6 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family AA_kinase PF00696.28 gi|305664144|ref|YP_003860432.1| - 1.7e-35 122.8 9.3 1.9e-35 122.6 9.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family NBD_C PF17042.5 gi|305664144|ref|YP_003860432.1| - 0.23 12.0 3.6 18 5.8 0.0 3.0 2 1 1 3 3 3 0 Nucleotide-binding C-terminal domain HTH_24 PF13412.6 gi|305664145|ref|YP_003860433.1| - 3.3e-16 58.6 0.6 5e-16 58.0 0.6 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|305664145|ref|YP_003860433.1| - 5.6e-15 54.9 0.2 9e-15 54.2 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|305664145|ref|YP_003860433.1| - 1.6e-14 53.6 0.1 2.3e-14 53.1 0.1 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|305664145|ref|YP_003860433.1| - 9.2e-08 32.0 0.3 1.4e-07 31.5 0.3 1.3 1 0 0 1 1 1 1 NapD protein HTH_11 PF08279.12 gi|305664145|ref|YP_003860433.1| - 3.2e-07 30.2 0.9 8.1e-07 28.9 0.5 1.9 2 0 0 2 2 2 1 HTH domain HTH_Mga PF08280.11 gi|305664145|ref|YP_003860433.1| - 7.4e-06 25.9 0.1 1.5e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_20 PF12840.7 gi|305664145|ref|YP_003860433.1| - 3.9e-05 23.6 0.0 6.6e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|305664145|ref|YP_003860433.1| - 0.0001 22.1 0.1 0.00016 21.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|305664145|ref|YP_003860433.1| - 0.00023 21.0 0.1 0.00038 20.3 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|305664145|ref|YP_003860433.1| - 0.00031 20.6 0.8 0.00059 19.7 0.4 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Mga PF05043.13 gi|305664145|ref|YP_003860433.1| - 0.00054 20.5 0.0 0.00083 19.9 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain DUF4423 PF14394.6 gi|305664145|ref|YP_003860433.1| - 0.00093 18.9 0.0 0.001 18.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) DUF2250 PF10007.9 gi|305664145|ref|YP_003860433.1| - 0.0021 18.1 0.2 0.0039 17.3 0.2 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.19 gi|305664145|ref|YP_003860433.1| - 0.0025 18.0 0.1 0.0046 17.1 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|305664145|ref|YP_003860433.1| - 0.0041 17.0 0.1 0.0075 16.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|305664145|ref|YP_003860433.1| - 0.0064 16.4 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|305664145|ref|YP_003860433.1| - 0.0066 16.2 0.1 0.01 15.6 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|305664145|ref|YP_003860433.1| - 0.0083 15.9 0.1 0.019 14.7 0.1 1.6 1 1 0 1 1 1 1 HTH DNA binding domain B-block_TFIIIC PF04182.12 gi|305664145|ref|YP_003860433.1| - 0.012 15.8 0.1 0.024 14.8 0.1 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Sigma70_r4 PF04545.16 gi|305664145|ref|YP_003860433.1| - 0.019 14.4 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|305664145|ref|YP_003860433.1| - 0.02 15.0 0.0 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rio2_N PF09202.11 gi|305664145|ref|YP_003860433.1| - 0.024 14.8 0.1 0.056 13.7 0.1 1.6 2 0 0 2 2 1 0 Rio2, N-terminal HTH_IclR PF09339.10 gi|305664145|ref|YP_003860433.1| - 0.028 14.2 0.0 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_8 PF02954.19 gi|305664145|ref|YP_003860433.1| - 0.031 14.1 0.2 0.056 13.2 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Sigma70_r4_2 PF08281.12 gi|305664145|ref|YP_003860433.1| - 0.038 13.7 0.1 0.056 13.1 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.6 gi|305664145|ref|YP_003860433.1| - 0.041 14.4 0.1 0.064 13.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_WhiA PF02650.14 gi|305664145|ref|YP_003860433.1| - 0.045 14.1 0.2 0.096 13.0 0.2 1.6 1 0 0 1 1 1 0 WhiA C-terminal HTH domain Rrf2 PF02082.20 gi|305664145|ref|YP_003860433.1| - 0.046 14.1 0.1 0.078 13.3 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator PCI PF01399.27 gi|305664145|ref|YP_003860433.1| - 0.059 13.9 0.1 0.1 13.1 0.1 1.3 1 0 0 1 1 1 0 PCI domain HTH_23 PF13384.6 gi|305664145|ref|YP_003860433.1| - 0.071 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_50 PF18024.1 gi|305664145|ref|YP_003860433.1| - 0.097 12.3 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.10 gi|305664145|ref|YP_003860433.1| - 0.1 12.7 0.1 0.16 12.1 0.1 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator Dimerisation2 PF16864.5 gi|305664145|ref|YP_003860433.1| - 0.22 11.5 0.0 0.3 11.1 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain GHMP_kinases_N PF00288.26 gi|305664146|ref|YP_003860434.1| - 9.8e-12 44.9 1.2 1.7e-11 44.2 1.2 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|305664146|ref|YP_003860434.1| - 2.2e-09 37.6 0.4 5e-09 36.4 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal Homoserine_dh PF00742.19 gi|305664147|ref|YP_003860435.1| - 9.4e-48 162.4 0.7 1.5e-47 161.7 0.7 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|305664147|ref|YP_003860435.1| - 2.8e-06 28.0 0.0 6e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|305664147|ref|YP_003860435.1| - 6.8e-05 22.7 0.0 0.00014 21.7 0.0 1.5 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Gp_dh_N PF00044.24 gi|305664147|ref|YP_003860435.1| - 0.047 14.0 0.6 0.12 12.8 0.6 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AA_kinase PF00696.28 gi|305664148|ref|YP_003860436.1| - 4.6e-42 144.3 0.2 5.6e-42 144.0 0.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family dCache_1 PF02743.18 gi|305664148|ref|YP_003860436.1| - 0.018 14.8 0.7 0.036 13.9 0.7 1.7 1 1 0 1 1 1 0 Cache domain Herpes_ori_bp PF02399.15 gi|305664148|ref|YP_003860436.1| - 0.081 11.0 0.1 0.11 10.5 0.1 1.1 1 0 0 1 1 1 0 Origin of replication binding protein Semialdhyde_dhC PF02774.18 gi|305664149|ref|YP_003860437.1| - 4.8e-41 140.8 0.1 9.7e-41 139.9 0.0 1.5 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|305664149|ref|YP_003860437.1| - 2.5e-33 115.1 0.0 4e-33 114.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.20 gi|305664149|ref|YP_003860437.1| - 0.03 13.9 0.1 1.7 8.3 0.1 2.3 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.22 gi|305664149|ref|YP_003860437.1| - 0.039 14.8 0.0 0.094 13.5 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold IL12 PF03039.14 gi|305664149|ref|YP_003860437.1| - 0.19 11.0 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 Interleukin-12 alpha subunit Rubrerythrin PF02915.17 gi|305664150|ref|YP_003860438.1| - 7.3e-05 23.2 0.6 0.0012 19.3 0.6 2.1 1 1 0 1 1 1 1 Rubrerythrin Yqai PF09466.10 gi|305664150|ref|YP_003860438.1| - 1.4 9.3 4.8 15 6.0 0.4 2.3 1 1 1 2 2 2 0 Hypothetical protein Yqai Iso_dh PF00180.20 gi|305664152|ref|YP_003860440.1| - 7.7e-96 321.3 0.0 9.3e-96 321.0 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase v110 PF01639.17 gi|305664153|ref|YP_003860441.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Viral family 110 UPF0102 PF02021.17 gi|305664154|ref|YP_003860442.1| - 5.4e-06 26.6 0.3 5.4e-06 26.6 0.3 1.9 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 HTH_1 PF00126.27 gi|305664154|ref|YP_003860442.1| - 1e-05 25.4 0.4 0.0001 22.2 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family NucS PF01939.16 gi|305664154|ref|YP_003860442.1| - 0.00023 20.6 3.0 0.00025 20.4 0.2 2.1 1 1 1 2 2 2 1 Endonuclease NucS HTH_24 PF13412.6 gi|305664154|ref|YP_003860442.1| - 0.0073 15.8 0.2 0.28 10.8 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|305664154|ref|YP_003860442.1| - 0.0093 15.8 0.6 1 9.3 0.0 3.2 4 0 0 4 4 4 1 MarR family RasGAP_C PF03836.15 gi|305664154|ref|YP_003860442.1| - 0.01 16.0 2.8 0.017 15.3 2.8 1.3 1 0 0 1 1 1 0 RasGAP C-terminus HTH_8 PF02954.19 gi|305664154|ref|YP_003860442.1| - 0.011 15.5 0.1 0.15 11.8 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family MreC PF04085.14 gi|305664154|ref|YP_003860442.1| - 0.026 14.4 1.0 0.076 12.9 0.2 2.0 2 0 0 2 2 2 0 rod shape-determining protein MreC HTH_Crp_2 PF13545.6 gi|305664154|ref|YP_003860442.1| - 0.045 13.7 0.3 7.8 6.6 0.0 3.4 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain DUF4143 PF13635.6 gi|305664154|ref|YP_003860442.1| - 0.048 13.8 0.1 0.12 12.6 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) FlgN PF05130.12 gi|305664154|ref|YP_003860442.1| - 0.06 13.9 5.8 0.1 13.1 5.8 1.4 1 0 0 1 1 1 0 FlgN protein Pfk_N PF18468.1 gi|305664154|ref|YP_003860442.1| - 0.11 12.9 0.0 0.37 11.2 0.0 1.8 1 1 1 2 2 2 0 Phosphofructokinase N-terminal domain yeast Laminin_II PF06009.12 gi|305664154|ref|YP_003860442.1| - 0.13 12.3 3.6 0.33 10.9 3.6 1.7 1 0 0 1 1 1 0 Laminin Domain II Seryl_tRNA_N PF02403.22 gi|305664154|ref|YP_003860442.1| - 0.18 12.0 4.7 0.17 12.1 3.2 1.7 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain HTH_30 PF13556.6 gi|305664154|ref|YP_003860442.1| - 0.2 11.5 0.5 1 9.2 0.0 2.4 4 1 0 4 4 4 0 PucR C-terminal helix-turn-helix domain Spc24 PF08286.11 gi|305664154|ref|YP_003860442.1| - 0.26 11.5 3.0 26 5.1 0.0 2.8 3 0 0 3 3 3 0 Spc24 subunit of Ndc80 H-kinase_dim PF02895.14 gi|305664154|ref|YP_003860442.1| - 0.83 10.1 4.8 2.8 8.4 4.8 2.0 1 1 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain ABC_tran PF00005.27 gi|305664155|ref|YP_003860443.1| - 2.7e-34 118.6 0.0 3.6e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305664155|ref|YP_003860443.1| - 2.9e-09 37.3 1.1 1.8e-07 31.6 1.1 2.5 1 1 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|305664155|ref|YP_003860443.1| - 3.5e-08 33.6 3.3 0.0018 18.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|305664155|ref|YP_003860443.1| - 7.6e-05 22.4 0.1 0.00014 21.5 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|305664155|ref|YP_003860443.1| - 0.00028 20.4 1.1 0.0018 17.8 1.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|305664155|ref|YP_003860443.1| - 0.00094 19.0 0.2 0.0018 18.0 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|305664155|ref|YP_003860443.1| - 0.0039 17.1 0.1 0.024 14.6 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase AAA_10 PF12846.7 gi|305664155|ref|YP_003860443.1| - 0.0049 15.8 0.0 0.0056 15.6 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain AAA_23 PF13476.6 gi|305664155|ref|YP_003860443.1| - 0.0056 17.2 0.0 0.008 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|305664155|ref|YP_003860443.1| - 0.043 13.9 0.2 0.1 12.7 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|305664155|ref|YP_003860443.1| - 0.045 13.5 0.0 0.088 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|305664155|ref|YP_003860443.1| - 0.046 14.1 3.1 0.57 10.5 3.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|305664155|ref|YP_003860443.1| - 0.068 13.4 1.2 0.62 10.3 1.2 2.1 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|305664155|ref|YP_003860443.1| - 0.1 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|305664155|ref|YP_003860443.1| - 0.12 12.8 0.3 1.3 9.4 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|305664156|ref|YP_003860444.1| - 5.5e-23 82.0 0.0 8.1e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305664156|ref|YP_003860444.1| - 2.7e-10 40.6 0.3 1.1e-09 38.7 0.3 2.0 1 1 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|305664156|ref|YP_003860444.1| - 1.2e-08 35.2 4.1 3e-05 24.0 0.6 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305664156|ref|YP_003860444.1| - 3.7e-05 23.3 0.2 0.00045 19.7 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|305664156|ref|YP_003860444.1| - 0.00011 21.8 0.1 0.00021 21.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|305664156|ref|YP_003860444.1| - 0.0036 16.7 0.0 0.034 13.5 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_13 PF13166.6 gi|305664156|ref|YP_003860444.1| - 0.0062 15.2 0.3 0.083 11.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|305664156|ref|YP_003860444.1| - 0.0071 16.6 0.1 0.016 15.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|305664156|ref|YP_003860444.1| - 0.009 16.5 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|305664156|ref|YP_003860444.1| - 0.0093 16.0 0.0 0.027 14.5 0.0 1.8 2 0 0 2 2 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|305664156|ref|YP_003860444.1| - 0.032 14.2 0.3 0.061 13.2 0.3 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|305664156|ref|YP_003860444.1| - 0.059 13.9 1.1 0.38 11.3 1.1 2.1 1 1 1 2 2 2 0 AAA domain NACHT PF05729.12 gi|305664156|ref|YP_003860444.1| - 0.085 12.8 0.1 0.34 10.8 0.1 1.8 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|305664156|ref|YP_003860444.1| - 0.094 12.4 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|305664156|ref|YP_003860444.1| - 0.095 13.1 0.2 0.13 12.6 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|305664156|ref|YP_003860444.1| - 0.17 11.9 0.1 0.42 10.6 0.1 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|305664156|ref|YP_003860444.1| - 0.23 11.6 0.0 0.37 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|305664156|ref|YP_003860444.1| - 0.25 10.3 0.1 0.43 9.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) BPD_transp_1 PF00528.22 gi|305664157|ref|YP_003860445.1| - 4.1e-18 65.8 20.6 4.1e-18 65.8 20.6 2.2 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|305664157|ref|YP_003860445.1| - 0.0025 17.7 0.2 0.0025 17.7 0.2 3.5 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|305664158|ref|YP_003860446.1| - 1.7e-33 115.9 16.1 1.7e-33 115.9 16.1 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|305664159|ref|YP_003860447.1| - 5.7e-69 232.9 0.3 7.1e-69 232.6 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PEPcase_2 PF14010.6 gi|305664160|ref|YP_003860448.1| - 3.6e-112 375.4 1.0 4.1e-112 375.2 1.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.17 gi|305664160|ref|YP_003860448.1| - 0.13 10.3 0.0 0.21 9.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase PALP PF00291.25 gi|305664161|ref|YP_003860449.1| - 2.3e-75 253.8 1.0 2.6e-75 253.6 1.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|305664161|ref|YP_003860449.1| - 0.023 14.9 0.5 15 5.9 0.0 3.1 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PhnA_Zn_Ribbon PF08274.12 gi|305664161|ref|YP_003860449.1| - 0.035 14.1 0.1 0.062 13.3 0.1 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon HscB_4_cys PF18256.1 gi|305664161|ref|YP_003860449.1| - 1.1 9.2 3.5 2.8 7.8 3.5 1.7 1 1 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif Iso_dh PF00180.20 gi|305664162|ref|YP_003860450.1| - 1.1e-89 301.0 0.0 1.3e-89 300.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF4047 PF13256.6 gi|305664162|ref|YP_003860450.1| - 0.093 12.9 0.2 0.23 11.7 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) PdxA PF04166.12 gi|305664162|ref|YP_003860450.1| - 0.15 11.4 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA Aconitase_C PF00694.19 gi|305664163|ref|YP_003860451.1| - 3.4e-18 66.2 0.0 4.8e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.20 gi|305664164|ref|YP_003860452.1| - 6.8e-93 312.2 2.5 1.3e-90 304.7 2.5 2.1 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|305664164|ref|YP_003860452.1| - 0.00015 20.7 0.0 0.00021 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF3048 PF11258.8 gi|305664164|ref|YP_003860452.1| - 0.13 12.4 0.0 0.32 11.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3048) N-terminal domain HMGL-like PF00682.19 gi|305664165|ref|YP_003860453.1| - 1.8e-37 129.4 0.0 2.3e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 HMGL-like 2-Hacid_dh_C PF02826.19 gi|305664166|ref|YP_003860454.1| - 1.2e-53 181.1 0.0 1.7e-53 180.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|305664166|ref|YP_003860454.1| - 3.3e-30 104.5 0.0 3.8e-30 104.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|305664166|ref|YP_003860454.1| - 2.8e-05 24.3 0.0 6.3e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|305664166|ref|YP_003860454.1| - 0.00067 19.3 0.0 0.0033 17.0 0.0 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|305664166|ref|YP_003860454.1| - 0.0031 17.6 0.4 0.007 16.5 0.1 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Arylsulfotrans PF05935.11 gi|305664166|ref|YP_003860454.1| - 0.015 14.3 0.0 0.024 13.5 0.0 1.3 1 0 0 1 1 1 0 Arylsulfotransferase (ASST) TrkA_N PF02254.18 gi|305664166|ref|YP_003860454.1| - 0.037 14.3 0.6 0.78 10.0 0.2 2.4 2 0 0 2 2 2 0 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|305664166|ref|YP_003860454.1| - 0.049 12.9 0.1 0.11 11.7 0.1 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|305664166|ref|YP_003860454.1| - 0.054 14.0 0.0 0.095 13.2 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|305664166|ref|YP_003860454.1| - 0.14 12.1 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aminotran_5 PF00266.19 gi|305664167|ref|YP_003860455.1| - 1.6e-27 96.4 0.0 1.8e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF89 PF01937.19 gi|305664168|ref|YP_003860456.1| - 8.1e-20 71.1 0.3 1.7e-16 60.1 0.1 2.4 1 1 1 2 2 2 2 Protein of unknown function DUF89 DUF167 PF02594.16 gi|305664168|ref|YP_003860456.1| - 0.015 15.4 0.1 0.13 12.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised ACR, YggU family COG1872 Aldedh PF00171.22 gi|305664169|ref|YP_003860457.1| - 1.3e-124 416.2 0.0 1.5e-124 416.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|305664169|ref|YP_003860457.1| - 4.8e-07 29.2 0.0 2.3e-06 26.9 0.0 1.9 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Aminotran_5 PF00266.19 gi|305664170|ref|YP_003860458.1| - 3.3e-134 447.5 0.0 3.7e-134 447.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|305664170|ref|YP_003860458.1| - 1.5e-08 34.3 0.0 2e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|305664170|ref|YP_003860458.1| - 3.2e-08 32.5 0.1 6.9e-08 31.4 0.1 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|305664170|ref|YP_003860458.1| - 1.1e-07 31.5 0.1 1.9e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|305664170|ref|YP_003860458.1| - 2e-07 30.5 0.1 5.9e-07 29.0 0.1 1.6 2 0 0 2 2 2 1 Aminotransferase class I and II Pyridoxal_deC PF00282.19 gi|305664170|ref|YP_003860458.1| - 0.013 14.2 0.4 0.037 12.7 0.2 1.8 1 1 1 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.13 gi|305664170|ref|YP_003860458.1| - 0.02 13.9 1.4 0.088 11.8 1.4 1.8 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase Poly_export PF02563.16 gi|305664170|ref|YP_003860458.1| - 0.11 12.7 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide biosynthesis/export protein ParBc PF02195.18 gi|305664171|ref|YP_003860459.1| - 1.4e-07 31.7 0.1 2.2e-07 31.0 0.1 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain PALP PF00291.25 gi|305664172|ref|YP_003860460.1| - 1.4e-40 139.6 0.0 2.3e-40 138.9 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HD PF01966.22 gi|305664173|ref|YP_003860461.1| - 6.8e-12 45.7 2.0 1e-11 45.1 2.0 1.3 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|305664173|ref|YP_003860461.1| - 0.003 17.3 1.2 0.0043 16.8 0.4 1.6 2 0 0 2 2 2 1 HD containing hydrolase-like enzyme TraI_2 PF07514.11 gi|305664173|ref|YP_003860461.1| - 0.038 12.9 0.4 0.068 12.1 0.4 1.4 1 1 0 1 1 1 0 Putative helicase DUF4851 PF16143.5 gi|305664173|ref|YP_003860461.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4851) Peptidase_M50 PF02163.22 gi|305664175|ref|YP_003860463.1| - 5e-07 29.2 10.0 0.00018 20.9 0.4 3.1 2 1 1 3 3 3 3 Peptidase family M50 AAA_26 PF13500.6 gi|305664176|ref|YP_003860464.1| - 0.0026 17.6 0.1 0.072 12.9 0.1 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|305664176|ref|YP_003860464.1| - 0.05 13.5 0.0 3.8 7.4 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NitrOD5 PF11537.8 gi|305664176|ref|YP_003860464.1| - 0.1 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Nitrosopumilus output domain 5 ATP-cone PF03477.16 gi|305664177|ref|YP_003860465.1| - 1.3e-10 41.7 3.0 1.4e-10 41.6 0.9 1.8 1 1 1 2 2 2 1 ATP cone domain KNOX1 PF03790.13 gi|305664177|ref|YP_003860465.1| - 0.0029 17.3 0.3 0.0045 16.7 0.3 1.3 1 0 0 1 1 1 1 KNOX1 domain Radical_SAM PF04055.21 gi|305664178|ref|YP_003860466.1| - 1.3e-17 64.7 0.0 1.9e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|305664178|ref|YP_003860466.1| - 1.5e-05 25.3 0.0 2.3e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|305664178|ref|YP_003860466.1| - 6.2e-05 23.1 0.0 0.00011 22.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TatD_DNase PF01026.21 gi|305664179|ref|YP_003860467.1| - 6.4e-18 65.0 0.0 8.3e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.24 gi|305664179|ref|YP_003860467.1| - 0.064 12.7 0.0 0.1 12.0 0.0 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Radical_SAM PF04055.21 gi|305664179|ref|YP_003860467.1| - 0.08 13.3 0.2 16 5.8 0.0 2.6 1 1 1 2 2 2 0 Radical SAM superfamily MFS_1 PF07690.16 gi|305664180|ref|YP_003860468.1| - 9 5.1 53.5 1.8 7.4 38.5 2.1 1 1 1 2 2 2 0 Major Facilitator Superfamily MFS_1 PF07690.16 gi|305664181|ref|YP_003860469.1| - 2.9e-06 26.5 35.7 0.0013 17.8 14.7 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MS_channel PF00924.18 gi|305664182|ref|YP_003860470.1| - 2.9e-15 56.4 7.0 2.9e-15 56.4 7.0 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel EI24 PF07264.11 gi|305664182|ref|YP_003860470.1| - 1.9 8.7 7.5 3.4 7.9 7.5 1.5 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) TrkA_N PF02254.18 gi|305664183|ref|YP_003860471.1| - 0.0069 16.6 0.5 0.013 15.7 0.5 1.6 1 0 0 1 1 1 1 TrkA-N domain Toprim PF01751.22 gi|305664183|ref|YP_003860471.1| - 0.035 14.3 0.4 0.076 13.2 0.2 1.7 2 0 0 2 2 2 0 Toprim domain TrkA_C PF02080.21 gi|305664183|ref|YP_003860471.1| - 0.046 13.6 0.8 0.13 12.2 0.8 1.8 1 0 0 1 1 1 0 TrkA-C domain Methyltr_RsmB-F PF01189.17 gi|305664185|ref|YP_003860473.1| - 1.4e-60 204.4 0.0 2e-60 203.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F FtsJ PF01728.19 gi|305664185|ref|YP_003860473.1| - 4.4e-10 40.0 0.0 6.3e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|305664185|ref|YP_003860473.1| - 5.1e-07 29.6 0.0 9e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|305664185|ref|YP_003860473.1| - 0.00043 20.7 0.0 0.00093 19.6 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF N6_Mtase PF02384.16 gi|305664185|ref|YP_003860473.1| - 0.00043 19.6 0.0 0.00067 19.0 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_5 PF01795.19 gi|305664185|ref|YP_003860473.1| - 0.0017 17.9 0.0 0.084 12.4 0.0 2.4 2 0 0 2 2 2 1 MraW methylase family NusB PF01029.18 gi|305664185|ref|YP_003860473.1| - 0.0082 16.4 0.0 0.027 14.7 0.0 1.9 1 0 0 1 1 1 1 NusB family Fibrillarin PF01269.17 gi|305664185|ref|YP_003860473.1| - 0.035 13.2 0.0 0.065 12.3 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin DUF2431 PF10354.9 gi|305664185|ref|YP_003860473.1| - 0.054 13.8 0.0 0.15 12.3 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF2431) URO-D PF01208.17 gi|305664187|ref|YP_003860475.1| - 1.1e-16 60.9 0.0 1e-15 57.7 0.0 2.0 2 0 0 2 2 2 2 Uroporphyrinogen decarboxylase (URO-D) HAD_2 PF13419.6 gi|305664188|ref|YP_003860476.1| - 1.4e-08 35.1 0.0 3.3e-08 33.8 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DNA_pol_A_exo1 PF01612.20 gi|305664188|ref|YP_003860476.1| - 0.017 14.9 0.1 0.039 13.7 0.1 1.6 2 0 0 2 2 2 0 3'-5' exonuclease Hydrolase PF00702.26 gi|305664188|ref|YP_003860476.1| - 0.021 15.1 0.0 0.034 14.4 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Imm30 PF15565.6 gi|305664188|ref|YP_003860476.1| - 0.11 12.6 0.2 0.31 11.1 0.0 1.8 2 0 0 2 2 2 0 Immunity protein 30 Glyco_hydro_3 PF00933.21 gi|305664189|ref|YP_003860477.1| - 1.3e-54 185.7 0.0 2e-54 185.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|305664189|ref|YP_003860477.1| - 9e-46 156.4 0.0 1.8e-45 155.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|305664189|ref|YP_003860477.1| - 1.7e-16 60.1 0.0 3.3e-16 59.1 0.0 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain Pox_A3L PF05288.11 gi|305664189|ref|YP_003860477.1| - 0.18 11.8 0.1 0.4 10.7 0.1 1.6 1 0 0 1 1 1 0 Poxvirus A3L Protein Amino_oxidase PF01593.24 gi|305664190|ref|YP_003860478.1| - 2.7e-24 86.3 0.0 3.3e-24 86.0 0.0 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|305664190|ref|YP_003860478.1| - 1.4e-13 50.9 0.2 2.8e-13 49.9 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|305664190|ref|YP_003860478.1| - 4.8e-12 45.7 0.2 2e-07 30.5 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|305664190|ref|YP_003860478.1| - 1.4e-09 38.0 0.3 2.7e-08 33.8 0.3 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|305664190|ref|YP_003860478.1| - 9.7e-07 28.3 0.1 2.4e-06 27.0 0.1 1.6 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|305664190|ref|YP_003860478.1| - 7.7e-06 24.9 0.0 0.0073 15.0 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein GDI PF00996.18 gi|305664190|ref|YP_003860478.1| - 1.2e-05 24.1 0.7 0.0015 17.2 0.2 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor FAD_oxidored PF12831.7 gi|305664190|ref|YP_003860478.1| - 7.3e-05 22.3 0.0 0.00073 19.0 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|305664190|ref|YP_003860478.1| - 9e-05 21.9 0.6 0.00017 21.0 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|305664190|ref|YP_003860478.1| - 0.00037 19.8 0.6 0.0015 17.8 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|305664190|ref|YP_003860478.1| - 0.0027 16.9 0.9 0.42 9.6 0.1 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|305664190|ref|YP_003860478.1| - 0.013 14.7 0.1 0.022 14.0 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|305664190|ref|YP_003860478.1| - 0.042 14.4 1.1 0.84 10.2 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase RIFIN PF02009.16 gi|305664191|ref|YP_003860479.1| - 0.84 9.5 10.0 1.1 9.1 10.0 1.1 1 0 0 1 1 1 0 Rifin BPD_transp_1 PF00528.22 gi|305664192|ref|YP_003860480.1| - 6.2e-20 71.7 16.4 6.2e-20 71.7 16.4 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|305664192|ref|YP_003860480.1| - 3.8e-06 26.8 0.3 3.8e-06 26.8 0.3 3.6 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|305664193|ref|YP_003860481.1| - 5.1e-37 127.4 15.3 5.1e-37 127.4 15.3 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|305664194|ref|YP_003860482.1| - 6.2e-54 183.4 0.5 1.4e-53 182.3 0.5 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Trypan_PARP PF05887.11 gi|305664194|ref|YP_003860482.1| - 0.00015 21.7 13.3 0.00026 21.0 13.3 1.3 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) SBP_bac_8 PF13416.6 gi|305664195|ref|YP_003860483.1| - 2.4e-10 40.7 2.8 4.5e-10 39.8 2.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|305664195|ref|YP_003860483.1| - 8.6e-10 38.4 0.8 1.3e-09 37.9 0.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF2749 PF10907.8 gi|305664195|ref|YP_003860483.1| - 0.047 13.9 0.2 0.12 12.5 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) PsbN PF02468.15 gi|305664195|ref|YP_003860483.1| - 0.096 12.6 1.1 0.24 11.3 1.1 1.6 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) AF0941-like PF14591.6 gi|305664195|ref|YP_003860483.1| - 0.13 12.9 0.0 0.26 11.9 0.0 1.5 1 0 0 1 1 1 0 AF0941-like VbhA PF18495.1 gi|305664195|ref|YP_003860483.1| - 0.24 11.3 0.3 12 5.9 0.1 2.4 2 0 0 2 2 2 0 Antitoxin VbhA FeoB_associated PF12669.7 gi|305664195|ref|YP_003860483.1| - 0.27 11.7 4.2 0.53 10.7 4.2 1.4 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein ABC_tran PF00005.27 gi|305664197|ref|YP_003860485.1| - 1.2e-30 106.8 0.0 1.7e-30 106.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305664197|ref|YP_003860485.1| - 4.8e-05 23.8 0.0 9e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|305664197|ref|YP_003860485.1| - 0.0002 21.8 0.0 0.00024 21.6 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|305664197|ref|YP_003860485.1| - 0.0019 18.5 0.1 0.0036 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|305664197|ref|YP_003860485.1| - 0.0029 17.5 0.1 0.19 11.5 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Mg_chelatase PF01078.21 gi|305664197|ref|YP_003860485.1| - 0.0029 17.0 0.0 0.0051 16.2 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|305664197|ref|YP_003860485.1| - 0.0042 16.8 0.1 0.0098 15.6 0.0 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|305664197|ref|YP_003860485.1| - 0.0069 15.6 0.0 0.0099 15.1 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain Zeta_toxin PF06414.12 gi|305664197|ref|YP_003860485.1| - 0.008 15.5 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin SRP54 PF00448.22 gi|305664197|ref|YP_003860485.1| - 0.031 13.9 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_7 PF12775.7 gi|305664197|ref|YP_003860485.1| - 0.047 13.2 0.0 0.077 12.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region G-alpha PF00503.20 gi|305664197|ref|YP_003860485.1| - 0.057 12.6 0.0 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA PF00004.29 gi|305664197|ref|YP_003860485.1| - 0.07 13.6 0.0 0.22 11.9 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|305664197|ref|YP_003860485.1| - 0.076 13.1 0.1 0.29 11.2 0.1 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain ATPase PF06745.13 gi|305664197|ref|YP_003860485.1| - 0.078 12.3 0.1 0.54 9.6 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_24 PF13479.6 gi|305664197|ref|YP_003860485.1| - 0.081 12.6 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|305664197|ref|YP_003860485.1| - 0.088 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|305664197|ref|YP_003860485.1| - 0.092 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRK PF00485.18 gi|305664197|ref|YP_003860485.1| - 0.12 12.1 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.14 gi|305664197|ref|YP_003860485.1| - 0.16 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|305664197|ref|YP_003860485.1| - 0.19 10.8 0.1 0.32 10.0 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Myosin_head PF00063.21 gi|305664197|ref|YP_003860485.1| - 0.22 9.7 0.1 0.32 9.2 0.1 1.1 1 0 0 1 1 1 0 Myosin head (motor domain) AAA_15 PF13175.6 gi|305664197|ref|YP_003860485.1| - 0.24 11.1 0.0 0.29 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|305664198|ref|YP_003860486.1| - 7.6e-27 94.5 0.0 1.2e-26 93.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305664198|ref|YP_003860486.1| - 9.1e-19 67.7 0.0 1.5e-18 67.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|305664198|ref|YP_003860486.1| - 0.0001 22.2 0.7 0.0027 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|305664198|ref|YP_003860486.1| - 0.00037 20.8 0.1 0.17 12.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|305664198|ref|YP_003860486.1| - 0.0057 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|305664198|ref|YP_003860486.1| - 0.011 16.2 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|305664198|ref|YP_003860486.1| - 0.019 14.7 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|305664198|ref|YP_003860486.1| - 0.023 13.9 0.1 0.037 13.2 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|305664198|ref|YP_003860486.1| - 0.024 15.0 0.0 0.041 14.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SMC_N PF02463.19 gi|305664198|ref|YP_003860486.1| - 0.024 14.1 0.5 7.4 5.9 0.0 2.5 2 1 1 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|305664198|ref|YP_003860486.1| - 0.04 12.6 0.2 0.68 8.5 0.4 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|305664198|ref|YP_003860486.1| - 0.045 13.8 0.6 0.087 12.9 0.1 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase PRK PF00485.18 gi|305664198|ref|YP_003860486.1| - 0.079 12.7 0.2 0.14 11.9 0.0 1.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_23 PF13476.6 gi|305664198|ref|YP_003860486.1| - 0.085 13.4 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|305664198|ref|YP_003860486.1| - 0.096 12.6 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.9 gi|305664198|ref|YP_003860486.1| - 0.17 10.6 0.6 1.7 7.3 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Glyco_hydro_36 PF17167.4 gi|305664199|ref|YP_003860487.1| - 4.2e-163 542.9 0.0 5.2e-163 542.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase 36 superfamily, catalytic domain Glyco_transf_36 PF06165.11 gi|305664199|ref|YP_003860487.1| - 5.8e-90 301.1 0.2 8.1e-90 300.6 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 36 Bac_rhamnosid6H PF17389.2 gi|305664199|ref|YP_003860487.1| - 0.021 14.1 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain DUF1793 PF08760.11 gi|305664199|ref|YP_003860487.1| - 0.06 13.8 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1793) Glyco_hydro_12 PF01670.16 gi|305664200|ref|YP_003860488.1| - 2.5e-21 76.7 0.0 4.6e-21 75.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 12 RyR PF02026.16 gi|305664200|ref|YP_003860488.1| - 0.052 13.7 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 RyR domain Phosphorylase PF00343.20 gi|305664201|ref|YP_003860489.1| - 3.3e-17 62.1 0.0 5.4e-15 54.7 0.0 2.2 1 1 1 2 2 2 2 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|305664201|ref|YP_003860489.1| - 3.2e-06 26.8 0.0 6.9e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|305664201|ref|YP_003860489.1| - 0.0042 17.1 0.8 0.26 11.2 0.0 3.0 3 0 0 3 3 3 1 Glycosyltransferase Family 4 DUF1712 PF08217.11 gi|305664201|ref|YP_003860489.1| - 0.0099 14.4 0.0 0.027 13.0 0.0 1.6 2 0 0 2 2 2 1 Fungal domain of unknown function (DUF1712) Mt_ATP-synt_D PF05873.12 gi|305664201|ref|YP_003860489.1| - 0.075 12.9 0.3 0.66 9.8 0.1 2.2 2 0 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) Radical_SAM PF04055.21 gi|305664203|ref|YP_003860491.1| - 3.9e-23 82.6 0.0 1.6e-22 80.7 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|305664203|ref|YP_003860491.1| - 1.7e-07 31.6 0.1 4.6e-07 30.2 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|305664203|ref|YP_003860491.1| - 4.9e-07 30.1 0.0 2e-06 28.2 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|305664203|ref|YP_003860491.1| - 7.8e-06 26.0 0.0 1.8e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain HMGL-like PF00682.19 gi|305664203|ref|YP_003860491.1| - 3.1e-05 23.7 0.0 4.9e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|305664203|ref|YP_003860491.1| - 0.033 13.6 0.0 0.071 12.5 0.0 1.6 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Trm112p PF03966.16 gi|305664204|ref|YP_003860492.1| - 2.3e-12 47.3 0.8 3.2e-12 46.8 0.8 1.2 1 0 0 1 1 1 1 Trm112p-like protein Radical_SAM_C PF16199.5 gi|305664205|ref|YP_003860493.1| - 8.7e-31 105.8 0.3 2.3e-30 104.4 0.3 1.8 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|305664205|ref|YP_003860493.1| - 2.8e-21 76.6 0.0 7.3e-21 75.3 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|305664205|ref|YP_003860493.1| - 1.3e-10 41.5 0.4 2.8e-10 40.5 0.4 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|305664205|ref|YP_003860493.1| - 7e-07 29.2 0.0 1.6e-06 28.1 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|305664205|ref|YP_003860493.1| - 4.8e-05 23.7 0.0 0.0001 22.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain ATPase_2 PF01637.18 gi|305664206|ref|YP_003860494.1| - 6.8e-18 65.4 0.1 5.4e-17 62.5 0.0 2.0 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|305664206|ref|YP_003860494.1| - 9.9e-09 35.3 0.0 0.0016 18.5 0.0 2.5 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|305664206|ref|YP_003860494.1| - 1.7e-06 28.3 0.0 3.5e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|305664206|ref|YP_003860494.1| - 2.3e-05 24.8 0.0 5.3e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain Methyltransf_11 PF08241.12 gi|305664207|ref|YP_003860495.1| - 9.6e-10 39.0 0.0 1.4e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|305664207|ref|YP_003860495.1| - 6e-09 36.5 0.0 8.7e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|305664207|ref|YP_003860495.1| - 0.00011 22.1 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|305664207|ref|YP_003860495.1| - 0.14 13.0 0.0 0.26 12.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|305664207|ref|YP_003860495.1| - 0.16 11.7 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Glyco_transf_5 PF08323.11 gi|305664208|ref|YP_003860496.1| - 1.1e-27 97.3 0.0 1.6e-27 96.7 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|305664208|ref|YP_003860496.1| - 2.8e-19 69.3 0.0 5.3e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|305664208|ref|YP_003860496.1| - 2.2e-11 44.3 0.0 4.1e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|305664208|ref|YP_003860496.1| - 9.2e-09 35.5 2.8 0.0015 18.5 1.5 3.0 3 1 0 3 3 3 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|305664208|ref|YP_003860496.1| - 1.3e-06 28.9 0.0 7.5e-06 26.5 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|305664208|ref|YP_003860496.1| - 0.0078 16.2 0.1 5.8 6.9 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferase 4-like DUF763 PF05559.11 gi|305664209|ref|YP_003860497.1| - 9.9e-119 396.1 0.0 1.9e-118 395.2 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF763) Cren7 PF11520.8 gi|305664210|ref|YP_003860498.1| - 1.7e-33 114.3 2.7 1.8e-33 114.2 2.7 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 HTH_36 PF13730.6 gi|305664211|ref|YP_003860499.1| - 0.017 15.1 0.0 0.039 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain SIS PF01380.22 gi|305664212|ref|YP_003860500.1| - 1.1e-40 138.5 0.3 2.1e-24 85.8 0.2 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|305664212|ref|YP_003860500.1| - 2.7e-10 40.6 0.0 5.4e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|305664212|ref|YP_003860500.1| - 7.7e-09 35.5 0.0 1.5e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|305664212|ref|YP_003860500.1| - 0.0031 17.5 0.3 0.026 14.5 0.1 2.2 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|305664212|ref|YP_003860500.1| - 0.11 11.4 0.0 0.18 10.6 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferases class-II dUTPase PF00692.19 gi|305664213|ref|YP_003860501.1| - 1.1e-09 38.0 0.0 1.5e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|305664213|ref|YP_003860501.1| - 0.016 14.0 0.0 0.021 13.6 0.0 1.1 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF148 PF02520.17 gi|305664214|ref|YP_003860502.1| - 0.041 14.0 0.6 0.065 13.3 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF148 NUDIX_4 PF14815.6 gi|305664214|ref|YP_003860502.1| - 0.047 13.7 0.1 0.079 12.9 0.1 1.4 1 1 1 2 2 2 0 NUDIX domain BORCS6 PF10157.9 gi|305664215|ref|YP_003860503.1| - 0.11 12.7 1.8 8.7 6.6 0.2 2.3 1 1 1 2 2 2 0 BLOC-1-related complex sub-unit 6 PmbA_TldD PF01523.16 gi|305664216|ref|YP_003860504.1| - 2e-21 77.1 0.1 4.5e-21 75.9 0.0 1.6 2 0 0 2 2 2 1 Putative modulator of DNA gyrase NAD_synthase PF02540.17 gi|305664217|ref|YP_003860505.1| - 1.3e-10 40.9 0.0 2.2e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|305664217|ref|YP_003860505.1| - 2e-05 24.2 0.0 0.00012 21.7 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|305664217|ref|YP_003860505.1| - 2.2e-05 24.3 0.0 3.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 gi|305664217|ref|YP_003860505.1| - 0.00071 19.4 0.0 0.0022 17.8 0.0 1.8 2 0 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.16 gi|305664217|ref|YP_003860505.1| - 0.00091 18.1 0.0 0.0027 16.6 0.0 1.8 2 1 0 2 2 2 1 tRNA methyl transferase PUB PF09409.10 gi|305664217|ref|YP_003860505.1| - 0.043 13.7 0.4 1.2 9.2 0.1 2.4 1 1 1 2 2 2 0 PUB domain Radical_SAM PF04055.21 gi|305664218|ref|YP_003860506.1| - 2.1e-27 96.5 0.1 6.6e-27 94.9 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|305664218|ref|YP_003860506.1| - 5.7e-20 71.6 0.0 9.6e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|305664218|ref|YP_003860506.1| - 4.2e-11 43.3 0.0 8.7e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|305664218|ref|YP_003860506.1| - 1.8e-06 28.1 0.0 3.1e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|305664219|ref|YP_003860507.1| - 1.9e-23 83.7 0.0 6.6e-23 81.9 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|305664219|ref|YP_003860507.1| - 5.4e-13 49.0 0.0 1.8e-12 47.4 0.0 1.9 2 0 0 2 2 2 1 B12 binding domain Radical_SAM_N PF08497.10 gi|305664219|ref|YP_003860507.1| - 0.093 11.9 0.0 4.2 6.5 0.0 2.8 3 0 0 3 3 3 0 Radical SAM N-terminal p450 PF00067.22 gi|305664219|ref|YP_003860507.1| - 0.11 11.2 0.0 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 Cytochrome P450 Cytochrom_B558a PF05038.13 gi|305664220|ref|YP_003860508.1| - 0.0003 20.4 0.6 0.00038 20.1 0.6 1.1 1 0 0 1 1 1 1 Cytochrome Cytochrome b558 alpha-subunit DUF308 PF03729.13 gi|305664220|ref|YP_003860508.1| - 0.00059 20.1 11.5 0.0011 19.3 11.5 1.5 1 1 0 1 1 1 1 Short repeat of unknown function (DUF308) COPI_assoc PF08507.10 gi|305664220|ref|YP_003860508.1| - 0.00097 19.2 1.7 0.001 19.1 1.7 1.0 1 0 0 1 1 1 1 COPI associated protein YtpI PF14007.6 gi|305664220|ref|YP_003860508.1| - 0.0024 18.0 1.3 0.0026 17.9 1.3 1.1 1 0 0 1 1 1 1 YtpI-like protein DUF3096 PF11295.8 gi|305664220|ref|YP_003860508.1| - 0.013 15.2 17.2 0.015 14.9 16.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3096) SLATT_6 PF18169.1 gi|305664220|ref|YP_003860508.1| - 0.016 14.8 2.2 0.017 14.7 2.2 1.1 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 Phage_holin_3_6 PF07332.11 gi|305664220|ref|YP_003860508.1| - 0.025 14.6 0.9 0.027 14.5 0.9 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|305664220|ref|YP_003860508.1| - 0.046 12.5 3.2 0.045 12.5 3.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Melittin PF01372.17 gi|305664220|ref|YP_003860508.1| - 0.14 12.1 1.9 0.34 10.9 1.9 1.7 1 0 0 1 1 1 0 Melittin MMPL PF03176.15 gi|305664220|ref|YP_003860508.1| - 0.48 9.3 4.2 0.55 9.1 4.2 1.0 1 0 0 1 1 1 0 MMPL family DUF2892 PF11127.8 gi|305664220|ref|YP_003860508.1| - 6.4 6.9 8.2 9.3 6.4 8.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) Fer4_13 PF13370.6 gi|305664221|ref|YP_003860509.1| - 3.9e-16 59.3 0.3 5.7e-16 58.8 0.3 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|305664221|ref|YP_003860509.1| - 2.7e-15 56.9 0.3 3e-15 56.7 0.3 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|305664221|ref|YP_003860509.1| - 0.00091 19.0 4.7 0.0052 16.5 1.7 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_19 PF06902.11 gi|305664221|ref|YP_003860509.1| - 0.0022 18.0 2.7 0.031 14.3 2.7 2.1 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_2 PF12797.7 gi|305664221|ref|YP_003860509.1| - 0.0097 16.0 0.8 0.0097 16.0 0.8 1.9 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|305664221|ref|YP_003860509.1| - 0.051 13.7 2.0 0.19 11.8 0.4 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|305664221|ref|YP_003860509.1| - 0.52 11.0 4.0 0.83 10.3 1.2 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Glyco_tranf_2_3 PF13641.6 gi|305664222|ref|YP_003860510.1| - 3.1e-20 73.0 0.0 4.4e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|305664222|ref|YP_003860510.1| - 9e-13 48.6 0.0 1.3e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|305664222|ref|YP_003860510.1| - 2.4e-12 47.0 0.2 3.6e-12 46.4 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|305664222|ref|YP_003860510.1| - 7.2e-08 32.1 0.0 1e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|305664222|ref|YP_003860510.1| - 0.00042 19.1 10.6 0.0064 15.2 0.0 3.2 3 1 1 4 4 4 2 Chitin synthase Surfac_D-trimer PF09006.11 gi|305664222|ref|YP_003860510.1| - 0.022 14.7 0.8 0.11 12.4 0.2 2.1 2 0 0 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation Pkinase PF00069.25 gi|305664223|ref|YP_003860511.1| - 0.024 14.0 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein kinase domain tRNA-synt_1 PF00133.22 gi|305664224|ref|YP_003860512.1| - 1.1e-101 341.0 0.0 4.7e-100 335.6 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|305664224|ref|YP_003860512.1| - 2.5e-30 105.4 4.8 6.2e-30 104.2 4.8 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|305664224|ref|YP_003860512.1| - 5.5e-26 91.2 1.4 3.3e-13 49.1 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) DZR PF12773.7 gi|305664224|ref|YP_003860512.1| - 0.0036 17.3 0.9 1.1 9.4 0.2 3.2 3 0 0 3 3 3 1 Double zinc ribbon tRNA-synt_1f PF01921.18 gi|305664224|ref|YP_003860512.1| - 0.0097 14.9 0.0 3.4 6.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) HypA PF01155.19 gi|305664224|ref|YP_003860512.1| - 0.051 13.6 0.1 16 5.6 0.0 3.0 3 0 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HscB_4_cys PF18256.1 gi|305664224|ref|YP_003860512.1| - 0.12 12.2 0.1 0.12 12.2 0.1 3.3 4 0 0 4 4 4 0 Co-chaperone HscB tetracysteine metal binding motif zf-ribbon_3 PF13248.6 gi|305664224|ref|YP_003860512.1| - 0.13 11.7 12.0 6.7 6.3 0.5 4.2 4 0 0 4 4 4 0 zinc-ribbon domain Phage_Capsid_P3 PF09018.11 gi|305664224|ref|YP_003860512.1| - 0.16 10.7 0.2 0.25 10.1 0.2 1.1 1 0 0 1 1 1 0 P3 major capsid protein Zn-ribbon_8 PF09723.10 gi|305664224|ref|YP_003860512.1| - 0.27 11.4 3.6 7.6 6.7 0.4 3.6 3 1 0 3 3 3 0 Zinc ribbon domain zf-ISL3 PF14690.6 gi|305664224|ref|YP_003860512.1| - 0.43 11.3 12.0 4 8.2 0.4 4.4 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.6 gi|305664224|ref|YP_003860512.1| - 4.8 6.6 5.8 9 5.7 0.0 3.1 2 1 2 4 4 4 0 Transcription factor zinc-finger zf-ACC PF17848.1 gi|305664224|ref|YP_003860512.1| - 5.3 7.2 8.5 14 5.8 0.1 3.8 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Nudix_N_2 PF14803.6 gi|305664224|ref|YP_003860512.1| - 5.9 6.9 5.4 75 3.4 0.8 3.8 3 1 1 4 4 4 0 Nudix N-terminal eIF2A PF08662.11 gi|305664225|ref|YP_003860513.1| - 0.15 11.9 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic translation initiation factor eIF2A HD PF01966.22 gi|305664226|ref|YP_003860514.1| - 3.6e-05 24.0 0.6 6.3e-05 23.2 0.6 1.5 1 0 0 1 1 1 1 HD domain Carboxyl_trans PF01039.22 gi|305664228|ref|YP_003860516.1| - 8.8e-185 615.0 0.7 9.9e-185 614.9 0.7 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|305664228|ref|YP_003860516.1| - 3.4e-07 30.0 0.8 1e-06 28.4 0.0 2.0 2 1 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) DnaB_bind PF10410.9 gi|305664228|ref|YP_003860516.1| - 0.037 14.2 0.2 0.11 12.7 0.2 1.8 1 0 0 1 1 1 0 DnaB-helicase binding domain of primase Biotin_lipoyl PF00364.22 gi|305664229|ref|YP_003860517.1| - 6.1e-20 70.8 0.3 4.3e-19 68.1 0.1 2.3 3 0 0 3 3 3 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|305664229|ref|YP_003860517.1| - 3.3e-12 46.0 0.0 5.4e-07 29.3 0.0 2.4 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|305664229|ref|YP_003860517.1| - 5.4e-05 23.8 0.0 0.091 13.5 0.0 2.7 2 1 1 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|305664229|ref|YP_003860517.1| - 0.00038 19.7 0.1 0.11 11.7 0.0 2.7 1 1 2 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion DUF2118 PF09891.9 gi|305664229|ref|YP_003860517.1| - 0.0016 18.4 2.3 0.0041 17.1 2.3 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) RnfC_N PF13375.6 gi|305664229|ref|YP_003860517.1| - 0.0038 17.2 0.0 0.0061 16.5 0.0 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|305664229|ref|YP_003860517.1| - 0.043 13.7 0.1 0.11 12.4 0.1 1.7 1 1 1 2 2 2 0 Glycine cleavage H-protein Peptidase_M23 PF01551.22 gi|305664229|ref|YP_003860517.1| - 0.12 12.6 0.0 0.45 10.8 0.0 2.0 1 1 1 2 2 2 0 Peptidase family M23 Pribosyltran PF00156.27 gi|305664230|ref|YP_003860518.1| - 0.027 14.0 0.4 0.24 10.9 0.0 2.4 2 1 0 2 2 2 0 Phosphoribosyl transferase domain Sigma_reg_C PF13791.6 gi|305664230|ref|YP_003860518.1| - 0.22 11.7 2.6 14 5.9 0.1 3.2 3 1 0 3 3 3 0 Sigma factor regulator C-terminal DS PF01916.17 gi|305664231|ref|YP_003860519.1| - 7.1e-91 304.4 0.0 8.2e-91 304.2 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Glyco_hydro_57 PF03065.15 gi|305664232|ref|YP_003860520.1| - 1.3e-63 215.2 0.2 2.3e-63 214.4 0.2 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glyco_hydro_57 PF03065.15 gi|305664233|ref|YP_003860521.1| - 5.9e-38 130.9 5.0 2e-32 112.7 0.0 3.0 2 1 1 3 3 3 2 Glycosyl hydrolase family 57 A2M_BRD PF07703.14 gi|305664233|ref|YP_003860521.1| - 0.056 13.8 0.1 0.1 13.0 0.1 1.4 1 0 0 1 1 1 0 Alpha-2-macroglobulin bait region domain NTP_transferase PF00483.23 gi|305664234|ref|YP_003860522.1| - 4.4e-38 131.3 0.0 5.6e-38 130.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|305664234|ref|YP_003860522.1| - 3.5e-12 45.5 19.4 7.2e-07 28.7 2.3 4.3 1 1 2 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|305664234|ref|YP_003860522.1| - 1.6e-05 25.3 0.0 2.6e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|305664234|ref|YP_003860522.1| - 0.00011 21.3 0.8 0.00018 20.6 0.8 1.3 1 0 0 1 1 1 1 L-fucokinase DUF4954 PF16314.5 gi|305664234|ref|YP_003860522.1| - 0.00068 17.9 5.2 0.0075 14.5 4.8 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4954) Hexapep_2 PF14602.6 gi|305664234|ref|YP_003860522.1| - 6.7 6.6 12.1 33 4.3 4.2 3.6 2 1 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase GalP_UDP_transf PF01087.22 gi|305664235|ref|YP_003860523.1| - 4.3e-21 76.2 0.0 4.9e-20 72.7 0.0 2.5 2 1 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|305664235|ref|YP_003860523.1| - 4.4e-21 75.3 0.0 7e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.8 gi|305664235|ref|YP_003860523.1| - 8.5e-10 39.1 1.2 2.5e-08 34.4 0.6 2.2 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding DUF4931 PF16285.5 gi|305664235|ref|YP_003860523.1| - 3.2e-06 26.6 0.1 1.9e-05 24.1 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4931) HIT PF01230.23 gi|305664235|ref|YP_003860523.1| - 0.00049 20.8 0.0 0.21 12.4 0.0 2.3 2 0 0 2 2 2 2 HIT domain GHMP_kinases_N PF00288.26 gi|305664236|ref|YP_003860524.1| - 2e-16 60.0 0.3 2e-16 60.0 0.3 2.2 2 1 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|305664236|ref|YP_003860524.1| - 2.6e-12 46.9 0.0 6.9e-12 45.6 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|305664236|ref|YP_003860524.1| - 2e-10 40.1 0.0 4.1e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Methyltrn_RNA_3 PF02598.17 gi|305664237|ref|YP_003860525.1| - 1.2e-64 218.6 0.0 1.3e-64 218.4 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|305664237|ref|YP_003860525.1| - 0.049 13.8 0.0 1.1 9.4 0.0 2.1 2 0 0 2 2 2 0 SpoU rRNA Methylase family Met_10 PF02475.16 gi|305664238|ref|YP_003860526.1| - 1e-45 156.0 0.0 1.4e-45 155.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|305664238|ref|YP_003860526.1| - 0.00015 21.4 0.0 0.00022 21.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|305664238|ref|YP_003860526.1| - 0.0031 17.0 0.0 0.0043 16.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|305664238|ref|YP_003860526.1| - 0.018 14.6 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|305664238|ref|YP_003860526.1| - 0.027 14.0 0.0 0.071 12.7 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain TRM PF02005.16 gi|305664238|ref|YP_003860526.1| - 0.042 13.0 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase DUF4288 PF14119.6 gi|305664238|ref|YP_003860526.1| - 0.16 12.4 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4288) AAA_16 PF13191.6 gi|305664239|ref|YP_003860527.1| - 3e-07 31.0 0.1 0.00014 22.2 0.0 3.5 2 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|305664239|ref|YP_003860527.1| - 5.4e-07 29.8 0.4 1.3e-05 25.2 0.1 3.1 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea HTH_5 PF01022.20 gi|305664239|ref|YP_003860527.1| - 8.7e-07 28.7 4.6 1.1e-06 28.3 0.2 2.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|305664239|ref|YP_003860527.1| - 1e-06 28.2 10.5 0.00071 19.1 0.3 3.4 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|305664239|ref|YP_003860527.1| - 2.5e-05 24.3 0.1 0.31 11.1 0.2 2.8 2 0 0 2 2 2 2 Helix-turn-helix domain AAA_22 PF13401.6 gi|305664239|ref|YP_003860527.1| - 3.6e-05 24.1 0.0 0.00014 22.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain NB-ARC PF00931.22 gi|305664239|ref|YP_003860527.1| - 0.0005 19.3 0.0 0.001 18.3 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain MarR_2 PF12802.7 gi|305664239|ref|YP_003860527.1| - 0.00082 19.2 0.7 0.13 12.2 0.0 3.1 3 0 0 3 3 2 1 MarR family AAA_5 PF07728.14 gi|305664239|ref|YP_003860527.1| - 0.0039 17.2 0.0 0.011 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) TrmB PF01978.19 gi|305664239|ref|YP_003860527.1| - 0.0052 16.6 0.1 0.042 13.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|305664239|ref|YP_003860527.1| - 0.0088 16.0 0.1 0.04 13.9 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family Prismane PF03063.20 gi|305664239|ref|YP_003860527.1| - 0.0095 14.7 0.0 0.018 13.8 0.0 1.3 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HTH_AsnC-type PF13404.6 gi|305664239|ref|YP_003860527.1| - 0.0096 15.7 0.9 1.1 9.2 0.0 3.4 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain TPR_12 PF13424.6 gi|305664239|ref|YP_003860527.1| - 0.0099 16.1 0.0 0.16 12.3 0.0 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat HTH_Crp_2 PF13545.6 gi|305664239|ref|YP_003860527.1| - 0.012 15.5 0.2 0.37 10.8 0.0 2.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|305664239|ref|YP_003860527.1| - 0.02 14.8 1.4 0.046 13.7 0.0 2.3 3 0 0 3 3 2 0 MarR family HTH_27 PF13463.6 gi|305664239|ref|YP_003860527.1| - 0.021 15.3 0.3 1.8 9.1 0.0 2.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|305664239|ref|YP_003860527.1| - 0.081 13.0 0.0 1.5 8.8 0.0 2.2 2 0 0 2 2 2 0 Replication-relaxation HTH_36 PF13730.6 gi|305664239|ref|YP_003860527.1| - 0.083 12.9 0.5 2.5 8.1 0.0 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|305664239|ref|YP_003860527.1| - 0.087 12.9 0.4 0.82 9.8 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) NACHT PF05729.12 gi|305664239|ref|YP_003860527.1| - 0.12 12.3 0.1 0.49 10.3 0.0 2.0 2 0 0 2 2 2 0 NACHT domain TPR_2 PF07719.17 gi|305664239|ref|YP_003860527.1| - 0.15 12.2 1.7 21 5.5 0.1 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat HTH_IclR PF09339.10 gi|305664239|ref|YP_003860527.1| - 0.22 11.3 0.9 0.59 10.0 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain TRPM_tetra PF16519.5 gi|305664240|ref|YP_003860528.1| - 0.044 13.9 0.0 0.079 13.1 0.0 1.4 1 0 0 1 1 1 0 Tetramerisation domain of TRPM DASH_Dad3 PF08656.10 gi|305664240|ref|YP_003860528.1| - 0.075 13.1 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 DASH complex subunit Dad3 Transglut_core2 PF13369.6 gi|305664241|ref|YP_003860529.1| - 0.00022 20.8 0.0 0.00037 20.1 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.12 gi|305664241|ref|YP_003860529.1| - 0.016 14.7 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Transglutaminase-like domain CCDC53 PF10152.9 gi|305664241|ref|YP_003860529.1| - 0.12 12.8 0.3 0.32 11.4 0.2 1.7 2 0 0 2 2 2 0 Subunit CCDC53 of WASH complex Trypan_PARP PF05887.11 gi|305664241|ref|YP_003860529.1| - 0.2 11.6 13.6 0.49 10.4 13.6 1.6 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Pex14_N PF04695.13 gi|305664241|ref|YP_003860529.1| - 2.8 8.6 9.8 5.6 7.6 9.8 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region PIN PF01850.21 gi|305664242|ref|YP_003860530.1| - 1.2e-08 35.5 0.9 3.3e-08 34.1 0.9 1.6 1 1 0 1 1 1 1 PIN domain DUF104 PF01954.16 gi|305664243|ref|YP_003860531.1| - 9.7e-23 80.4 4.9 1.1e-22 80.2 4.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF1296 PF06972.11 gi|305664243|ref|YP_003860531.1| - 0.076 13.2 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1296) DUF86 PF01934.17 gi|305664245|ref|YP_003860533.1| - 1.1e-15 57.6 0.4 1.4e-15 57.2 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF3336 PF11815.8 gi|305664245|ref|YP_003860533.1| - 0.073 12.8 0.0 0.082 12.6 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3336) HEPN_RiboL-PSP PF18735.1 gi|305664245|ref|YP_003860533.1| - 0.082 12.8 0.2 0.11 12.4 0.2 1.3 1 1 0 1 1 1 0 RiboL-PSP-HEPN Glyco_transf_15 PF01793.16 gi|305664245|ref|YP_003860533.1| - 0.11 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Glycolipid 2-alpha-mannosyltransferase Polbeta PF18765.1 gi|305664246|ref|YP_003860534.1| - 3.6e-16 59.0 0.0 4.8e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|305664246|ref|YP_003860534.1| - 1e-07 32.2 0.5 1.5e-07 31.6 0.5 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|305664247|ref|YP_003860535.1| - 3.2e-14 52.8 0.0 4.3e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|305664247|ref|YP_003860535.1| - 0.001 19.3 0.2 0.0017 18.6 0.2 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain CAMSAP_CC1 PF17095.5 gi|305664247|ref|YP_003860535.1| - 0.17 11.8 5.2 2.3 8.2 0.1 2.2 2 0 0 2 2 2 0 Spectrin-binding region of Ca2+-Calmodulin DUF86 PF01934.17 gi|305664248|ref|YP_003860536.1| - 2.8e-18 65.9 0.2 3.5e-18 65.6 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTase_sub_bind PF08780.11 gi|305664248|ref|YP_003860536.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.4 1 1 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like TFIIE_alpha PF02002.17 gi|305664248|ref|YP_003860536.1| - 0.15 12.0 1.7 1.9 8.4 0.4 2.7 1 1 2 3 3 3 0 TFIIE alpha subunit CBM_4_9 PF02018.17 gi|305664250|ref|YP_003860538.1| - 4.4e-17 62.7 0.0 8.6e-17 61.7 0.0 1.5 1 0 0 1 1 1 1 Carbohydrate binding domain SBP_bac_5 PF00496.22 gi|305664251|ref|YP_003860539.1| - 2e-66 224.5 7.2 2e-66 224.5 7.2 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle UPF0154 PF03672.13 gi|305664251|ref|YP_003860539.1| - 0.094 12.8 2.7 5.3 7.1 0.5 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) FeoB_associated PF12669.7 gi|305664251|ref|YP_003860539.1| - 1 9.8 2.3 2.2 8.7 2.3 1.6 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein DUF2232 PF09991.9 gi|305664251|ref|YP_003860539.1| - 3.2 6.8 11.9 0.054 12.7 1.8 2.9 4 0 0 4 4 4 0 Predicted membrane protein (DUF2232) Trypan_PARP PF05887.11 gi|305664251|ref|YP_003860539.1| - 3.4 7.7 6.7 6.2 6.8 6.7 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) ABC_tran PF00005.27 gi|305664252|ref|YP_003860540.1| - 6.6e-31 107.7 0.0 1.1e-30 107.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305664252|ref|YP_003860540.1| - 6.4e-16 58.6 0.0 1.1e-15 57.9 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|305664252|ref|YP_003860540.1| - 0.00014 22.2 0.1 0.00093 19.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|305664252|ref|YP_003860540.1| - 0.00077 19.6 0.4 0.014 15.5 0.3 2.1 1 1 1 2 2 2 1 Helicase HerA, central domain AAA_16 PF13191.6 gi|305664252|ref|YP_003860540.1| - 0.001 19.5 0.0 0.0021 18.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|305664252|ref|YP_003860540.1| - 0.0045 16.7 0.0 0.0092 15.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain PRK PF00485.18 gi|305664252|ref|YP_003860540.1| - 0.012 15.3 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|305664252|ref|YP_003860540.1| - 0.015 15.8 0.0 1.3 9.4 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.20 gi|305664252|ref|YP_003860540.1| - 0.039 13.1 0.0 0.051 12.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit NB-ARC PF00931.22 gi|305664252|ref|YP_003860540.1| - 0.044 13.0 0.1 0.072 12.3 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Sigma54_activat PF00158.26 gi|305664252|ref|YP_003860540.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|305664253|ref|YP_003860541.1| - 5.3e-23 82.0 0.0 7.7e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|305664253|ref|YP_003860541.1| - 6.4e-19 68.2 0.0 1.1e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|305664253|ref|YP_003860541.1| - 3.2e-05 24.2 0.3 0.0003 21.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|305664253|ref|YP_003860541.1| - 0.014 15.2 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|305664253|ref|YP_003860541.1| - 0.018 15.0 0.3 0.12 12.3 0.1 2.1 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|305664253|ref|YP_003860541.1| - 0.018 14.7 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|305664253|ref|YP_003860541.1| - 0.036 14.5 0.1 0.057 13.8 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.18 gi|305664253|ref|YP_003860541.1| - 0.071 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF4777 PF16007.5 gi|305664253|ref|YP_003860541.1| - 0.072 13.4 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) ATPase PF06745.13 gi|305664253|ref|YP_003860541.1| - 0.073 12.4 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 KaiC AAA_33 PF13671.6 gi|305664253|ref|YP_003860541.1| - 0.082 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|305664253|ref|YP_003860541.1| - 0.083 12.8 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|305664253|ref|YP_003860541.1| - 0.12 12.3 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|305664253|ref|YP_003860541.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|305664253|ref|YP_003860541.1| - 0.14 12.5 0.0 0.31 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SMC_N PF02463.19 gi|305664253|ref|YP_003860541.1| - 0.14 11.5 0.4 2.8 7.3 0.4 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.25 gi|305664253|ref|YP_003860541.1| - 0.16 11.6 0.1 0.28 10.8 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain BPD_transp_1 PF00528.22 gi|305664254|ref|YP_003860542.1| - 5e-23 81.8 18.1 5e-23 81.8 18.1 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|305664254|ref|YP_003860542.1| - 1.3e-05 25.1 0.9 1.3e-05 25.1 0.9 3.6 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C EMC3_TMCO1 PF01956.16 gi|305664254|ref|YP_003860542.1| - 4.8 6.9 6.5 1.1 9.0 0.2 2.5 2 0 0 2 2 2 0 Integral membrane protein EMC3/TMCO1-like BPD_transp_1 PF00528.22 gi|305664255|ref|YP_003860543.1| - 2.1e-30 105.8 17.7 2.1e-30 105.8 17.7 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ThuA PF06283.11 gi|305664256|ref|YP_003860544.1| - 1.3e-57 195.4 0.0 1.4e-57 195.3 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation 4HBT PF03061.22 gi|305664257|ref|YP_003860545.1| - 0.0017 18.7 0.0 0.0031 17.8 0.0 1.5 1 1 0 1 1 1 1 Thioesterase superfamily PAH PF02671.21 gi|305664258|ref|YP_003860546.1| - 0.073 13.2 0.0 0.14 12.3 0.0 1.6 1 1 0 1 1 1 0 Paired amphipathic helix repeat Glycos_transf_1 PF00534.20 gi|305664261|ref|YP_003860549.1| - 5.1e-19 68.5 0.0 8.6e-19 67.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|305664261|ref|YP_003860549.1| - 1.2e-14 54.9 0.0 1.8e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|305664262|ref|YP_003860550.1| - 1.2e-07 31.5 0.0 1.9e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|305664262|ref|YP_003860550.1| - 1.7e-06 28.5 0.0 2.9e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|305664262|ref|YP_003860550.1| - 3.4e-05 23.9 0.2 6.2e-05 23.0 0.2 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|305664262|ref|YP_003860550.1| - 0.012 16.1 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|305664263|ref|YP_003860551.1| - 1.5e-08 34.3 0.0 2.7e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|305664263|ref|YP_003860551.1| - 5.6e-08 33.3 0.1 1.2e-07 32.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|305664263|ref|YP_003860551.1| - 5.8e-05 23.2 4.4 0.0003 20.8 1.8 3.0 2 2 1 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|305664263|ref|YP_003860551.1| - 0.047 14.1 0.0 0.18 12.3 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Melibiase_2_C PF17450.2 gi|305664265|ref|YP_003860553.1| - 0.2 11.9 0.0 0.62 10.3 0.0 1.9 1 0 0 1 1 1 0 Alpha galactosidase A C-terminal beta sandwich domain IFT57 PF10498.9 gi|305664266|ref|YP_003860554.1| - 0.00023 20.2 1.2 0.00034 19.7 1.2 1.3 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 DUF4795 PF16043.5 gi|305664266|ref|YP_003860554.1| - 0.0027 17.3 8.6 0.036 13.7 1.4 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4795) GAS PF13851.6 gi|305664266|ref|YP_003860554.1| - 0.0069 15.8 5.3 0.57 9.5 4.4 2.4 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding EzrA PF06160.12 gi|305664266|ref|YP_003860554.1| - 0.0097 14.1 6.8 0.048 11.8 4.3 2.1 1 1 0 2 2 2 1 Septation ring formation regulator, EzrA TACC_C PF05010.14 gi|305664266|ref|YP_003860554.1| - 0.013 15.3 2.8 0.022 14.5 2.8 1.4 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF1664 PF07889.12 gi|305664266|ref|YP_003860554.1| - 0.013 15.5 2.9 0.023 14.7 0.5 2.3 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|305664266|ref|YP_003860554.1| - 0.023 13.4 0.7 0.035 12.8 0.7 1.3 1 0 0 1 1 1 0 AAA domain DUF16 PF01519.16 gi|305664266|ref|YP_003860554.1| - 0.027 14.9 1.4 0.14 12.6 0.5 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 OmpH PF03938.14 gi|305664266|ref|YP_003860554.1| - 0.028 14.7 0.2 0.061 13.7 0.2 1.5 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) BAR PF03114.18 gi|305664266|ref|YP_003860554.1| - 0.03 14.0 1.2 0.046 13.4 0.4 1.7 2 0 0 2 2 2 0 BAR domain MCPsignal PF00015.21 gi|305664266|ref|YP_003860554.1| - 0.036 13.9 0.2 0.089 12.6 0.1 1.7 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Exonuc_VII_L PF02601.15 gi|305664266|ref|YP_003860554.1| - 0.04 13.5 0.2 0.049 13.2 0.2 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit TelA PF05816.11 gi|305664266|ref|YP_003860554.1| - 0.041 13.0 2.1 0.28 10.2 1.6 2.1 1 1 1 2 2 2 0 Toxic anion resistance protein (TelA) Fib_alpha PF08702.10 gi|305664266|ref|YP_003860554.1| - 0.074 13.2 1.8 0.35 11.0 0.7 2.2 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family SesA PF17107.5 gi|305664266|ref|YP_003860554.1| - 0.083 13.1 0.7 1.1 9.5 0.1 2.7 2 1 1 3 3 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Lectin_N PF03954.14 gi|305664266|ref|YP_003860554.1| - 0.089 12.5 0.1 0.2 11.4 0.1 1.5 2 0 0 2 2 1 0 Hepatic lectin, N-terminal domain KxDL PF10241.9 gi|305664266|ref|YP_003860554.1| - 0.091 13.0 4.9 1.5 9.2 2.0 3.0 1 1 3 4 4 4 0 Uncharacterized conserved protein Spc7 PF08317.11 gi|305664266|ref|YP_003860554.1| - 0.1 11.5 4.4 0.031 13.2 1.4 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein Diphthamide_syn PF01866.17 gi|305664266|ref|YP_003860554.1| - 0.16 11.4 0.3 0.4 10.1 0.2 1.7 2 0 0 2 2 2 0 Putative diphthamide synthesis protein Lsm_interact PF05391.11 gi|305664266|ref|YP_003860554.1| - 0.22 11.1 2.4 0.41 10.2 2.4 1.5 1 0 0 1 1 1 0 Lsm interaction motif DUF3782 PF12644.7 gi|305664266|ref|YP_003860554.1| - 0.24 11.6 7.9 5.2 7.3 0.2 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF3782) TMPIT PF07851.13 gi|305664266|ref|YP_003860554.1| - 0.25 10.6 0.2 2.9 7.0 0.1 1.7 1 1 1 2 2 2 0 TMPIT-like protein THOC7 PF05615.13 gi|305664266|ref|YP_003860554.1| - 0.32 11.3 10.5 2.4 8.5 5.3 3.3 2 1 0 2 2 2 0 Tho complex subunit 7 FapA PF03961.13 gi|305664266|ref|YP_003860554.1| - 0.38 9.3 2.9 0.39 9.3 1.3 1.8 1 1 1 2 2 2 0 Flagellar Assembly Protein A XhlA PF10779.9 gi|305664266|ref|YP_003860554.1| - 0.42 10.8 11.9 1 9.6 1.5 3.6 3 1 0 3 3 3 0 Haemolysin XhlA Prefoldin PF02996.17 gi|305664266|ref|YP_003860554.1| - 0.55 10.2 4.3 3.5 7.6 0.3 3.3 3 1 1 4 4 4 0 Prefoldin subunit CALCOCO1 PF07888.11 gi|305664266|ref|YP_003860554.1| - 0.56 9.0 8.8 0.78 8.5 8.8 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like PspB PF06667.12 gi|305664266|ref|YP_003860554.1| - 1.1 9.4 4.5 0.67 10.1 1.6 2.2 2 0 0 2 2 1 0 Phage shock protein B DUF3552 PF12072.8 gi|305664266|ref|YP_003860554.1| - 1.2 8.5 10.4 0.99 8.8 6.7 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3552) SKA2 PF16740.5 gi|305664266|ref|YP_003860554.1| - 1.5 8.6 4.5 2.1 8.2 0.8 2.7 2 1 1 3 3 3 0 Spindle and kinetochore-associated protein 2 Prefoldin_2 PF01920.20 gi|305664266|ref|YP_003860554.1| - 2.5 8.1 5.8 5.6 7.0 0.2 3.7 2 1 3 5 5 5 0 Prefoldin subunit YabA PF06156.13 gi|305664266|ref|YP_003860554.1| - 3.1 8.5 7.0 11 6.7 0.2 3.2 3 1 1 4 4 3 0 Initiation control protein YabA ADIP PF11559.8 gi|305664266|ref|YP_003860554.1| - 3.5 7.7 8.3 0.33 11.0 0.5 2.7 3 1 0 4 4 2 0 Afadin- and alpha -actinin-Binding Matrilin_ccoil PF10393.9 gi|305664266|ref|YP_003860554.1| - 4.5 7.2 5.3 49 3.9 0.1 3.3 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin DHR10 PF18595.1 gi|305664266|ref|YP_003860554.1| - 5.3 7.1 10.1 2.1 8.4 1.1 3.2 2 1 1 3 3 2 0 Designed helical repeat protein 10 domain MutS_III PF05192.18 gi|305664266|ref|YP_003860554.1| - 5.5 7.2 8.3 24 5.1 8.3 2.2 1 1 0 1 1 1 0 MutS domain III Vac_Fusion PF02346.16 gi|305664266|ref|YP_003860554.1| - 7.5 6.3 16.9 2.1 8.0 2.3 4.2 3 2 2 5 5 5 0 Chordopoxvirus multifunctional envelope protein A27 DUF2393 PF09624.10 gi|305664270|ref|YP_003860558.1| - 4.3e-05 23.6 2.2 5.6e-05 23.2 2.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2393) Alpha_adaptinC2 PF02883.20 gi|305664270|ref|YP_003860558.1| - 0.012 15.9 1.9 0.016 15.5 1.9 1.3 1 1 0 1 1 1 0 Adaptin C-terminal domain DUF3888 PF13027.6 gi|305664270|ref|YP_003860558.1| - 0.026 14.9 0.0 0.045 14.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3888) Gal-bind_lectin PF00337.22 gi|305664270|ref|YP_003860558.1| - 0.11 12.0 0.0 0.51 9.9 0.0 1.7 1 1 1 2 2 2 0 Galactoside-binding lectin T2SSF PF00482.23 gi|305664271|ref|YP_003860559.1| - 3.8e-06 26.9 3.3 6.9e-06 26.0 0.0 3.1 2 1 0 2 2 2 1 Type II secretion system (T2SS), protein F MerR_1 PF13411.6 gi|305664271|ref|YP_003860559.1| - 0.023 14.8 0.6 1.5 8.9 0.1 2.4 2 0 0 2 2 2 0 MerR HTH family regulatory protein PMP1_2 PF08114.11 gi|305664271|ref|YP_003860559.1| - 0.92 9.3 5.6 0.21 11.3 0.6 2.6 2 0 0 2 2 2 0 ATPase proteolipid family DHH PF01368.20 gi|305664272|ref|YP_003860560.1| - 0.00068 19.8 0.0 0.0015 18.7 0.0 1.6 1 0 0 1 1 1 1 DHH family HTH_3 PF01381.22 gi|305664273|ref|YP_003860561.1| - 4.2e-11 42.7 0.0 1.7e-10 40.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|305664273|ref|YP_003860561.1| - 1.4e-06 28.2 0.0 3.1e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|305664273|ref|YP_003860561.1| - 3.4e-05 24.1 0.0 5.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|305664273|ref|YP_003860561.1| - 0.084 12.8 0.0 0.45 10.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Elf1 PF05129.13 gi|305664274|ref|YP_003860562.1| - 8.1e-09 35.4 0.7 1.3e-08 34.8 0.7 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|305664274|ref|YP_003860562.1| - 0.00099 19.4 0.2 0.00099 19.4 0.2 1.7 2 0 0 2 2 2 1 Restriction alleviation protein Lar FdhE PF04216.12 gi|305664274|ref|YP_003860562.1| - 0.0056 16.6 1.1 0.0075 16.2 0.2 1.6 2 0 0 2 2 2 1 Protein involved in formate dehydrogenase formation IBR PF01485.21 gi|305664274|ref|YP_003860562.1| - 0.018 15.3 0.7 0.03 14.5 0.7 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Cys_rich_CPXG PF14255.6 gi|305664274|ref|YP_003860562.1| - 0.028 14.3 0.9 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG Vps36-NZF-N PF16988.5 gi|305664274|ref|YP_003860562.1| - 0.035 13.5 0.7 0.087 12.2 0.7 1.7 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain RecR PF02132.15 gi|305664274|ref|YP_003860562.1| - 0.079 12.5 1.7 0.13 11.9 0.1 2.0 2 0 0 2 2 2 0 RecR protein zf-ribbon_3 PF13248.6 gi|305664274|ref|YP_003860562.1| - 0.59 9.6 4.1 0.78 9.2 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain NOG1 PF06858.14 gi|305664275|ref|YP_003860563.1| - 2.3e-18 65.7 0.6 5.1e-18 64.6 0.6 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|305664275|ref|YP_003860563.1| - 9.4e-18 64.4 0.0 1.8e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1_N PF17835.1 gi|305664275|ref|YP_003860563.1| - 1.4e-14 54.4 0.5 2.7e-14 53.4 0.5 1.5 1 0 0 1 1 1 1 NOG1 N-terminal helical domain FeoB_N PF02421.18 gi|305664275|ref|YP_003860563.1| - 8.6e-11 41.6 0.0 1.5e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|305664275|ref|YP_003860563.1| - 0.00045 20.2 1.4 1.3 8.9 0.3 2.9 2 1 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|305664275|ref|YP_003860563.1| - 0.0015 18.5 0.3 0.0038 17.2 0.3 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_14 PF13173.6 gi|305664275|ref|YP_003860563.1| - 0.0021 18.1 0.1 0.55 10.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|305664275|ref|YP_003860563.1| - 0.0038 17.0 0.1 0.034 13.9 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|305664275|ref|YP_003860563.1| - 0.009 15.6 0.3 1.2 8.7 0.3 2.8 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain NTPase_1 PF03266.15 gi|305664275|ref|YP_003860563.1| - 0.025 14.5 0.0 0.07 13.0 0.0 1.8 1 0 0 1 1 1 0 NTPase SRPRB PF09439.10 gi|305664275|ref|YP_003860563.1| - 0.028 13.8 0.1 0.054 12.9 0.1 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_16 PF13191.6 gi|305664275|ref|YP_003860563.1| - 0.13 12.6 0.0 0.31 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain Glyco_trans_2_3 PF13632.6 gi|305664276|ref|YP_003860564.1| - 1.3e-10 41.5 1.6 2.5e-10 40.6 1.6 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|305664276|ref|YP_003860564.1| - 7.6e-05 22.6 0.1 0.00011 22.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|305664276|ref|YP_003860564.1| - 0.002 18.0 0.0 0.0045 16.9 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 PAPS_reduct PF01507.19 gi|305664277|ref|YP_003860565.1| - 2.4e-40 138.4 0.0 4.9e-40 137.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_17 PF13534.6 gi|305664277|ref|YP_003860565.1| - 1.1e-07 32.3 1.0 0.0007 20.1 0.1 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|305664277|ref|YP_003860565.1| - 2.1e-07 31.4 8.2 6.3e-07 29.9 8.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|305664277|ref|YP_003860565.1| - 4.6e-07 29.9 7.3 4.6e-07 29.9 7.3 2.2 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|305664277|ref|YP_003860565.1| - 1.1e-06 28.9 4.6 0.032 14.7 0.1 3.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|305664277|ref|YP_003860565.1| - 7.4e-06 26.0 4.1 7.4e-06 26.0 4.1 2.2 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|305664277|ref|YP_003860565.1| - 0.00024 20.8 6.8 0.021 14.6 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|305664277|ref|YP_003860565.1| - 0.00088 19.3 7.0 0.00088 19.3 7.0 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|305664277|ref|YP_003860565.1| - 0.0015 18.5 12.6 0.21 11.8 2.0 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain PUA PF01472.20 gi|305664277|ref|YP_003860565.1| - 0.0021 18.0 0.1 0.004 17.1 0.1 1.4 1 0 0 1 1 1 1 PUA domain Fer4_4 PF12800.7 gi|305664277|ref|YP_003860565.1| - 0.0028 18.0 12.9 0.027 14.9 1.8 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|305664277|ref|YP_003860565.1| - 0.0037 17.3 9.5 0.09 12.9 1.7 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain ThiI PF02568.14 gi|305664277|ref|YP_003860565.1| - 0.11 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) zinc_ribbon_9 PF14369.6 gi|305664277|ref|YP_003860565.1| - 0.7 10.2 7.0 2.6 8.4 7.0 2.0 1 1 0 1 1 1 0 zinc-ribbon Fer4_13 PF13370.6 gi|305664277|ref|YP_003860565.1| - 1.9 9.1 4.9 4 8.1 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I STAR_dimer PF16544.5 gi|305664278|ref|YP_003860566.1| - 0.11 12.1 0.6 10 5.8 0.0 2.2 1 1 1 2 2 2 0 Homodimerisation region of STAR domain protein TMEM251 PF15190.6 gi|305664279|ref|YP_003860567.1| - 0.012 15.6 6.2 0.041 13.8 0.5 2.3 2 0 0 2 2 2 0 Transmembrane protein 251 DUF4396 PF14342.6 gi|305664279|ref|YP_003860567.1| - 3.2 8.1 6.4 1.6 9.1 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4396) tRNA_bind PF01588.20 gi|305664280|ref|YP_003860568.1| - 2.1e-28 98.3 0.0 2.4e-28 98.1 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|305664281|ref|YP_003860569.1| - 3.8e-174 580.3 2.9 4.8e-174 579.9 2.9 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|305664281|ref|YP_003860569.1| - 1.1e-27 96.8 1.7 2.8e-27 95.6 1.7 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|305664281|ref|YP_003860569.1| - 3.2e-24 85.4 1.3 1.6e-10 40.3 0.2 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|305664281|ref|YP_003860569.1| - 1.1e-08 34.8 0.8 0.0066 15.8 0.0 3.4 3 1 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|305664281|ref|YP_003860569.1| - 0.00015 21.4 0.1 0.00029 20.4 0.1 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|305664281|ref|YP_003860569.1| - 0.0097 14.9 0.0 0.024 13.6 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (K) Zn_Tnp_IS1595 PF12760.7 gi|305664281|ref|YP_003860569.1| - 0.023 14.7 4.1 9.1 6.4 0.0 3.6 3 0 0 3 3 3 0 Transposase zinc-ribbon domain DUF639 PF04842.12 gi|305664281|ref|YP_003860569.1| - 0.036 13.5 0.0 0.077 12.4 0.0 1.5 1 0 0 1 1 1 0 Plant protein of unknown function (DUF639) zf-TFIIB PF13453.6 gi|305664281|ref|YP_003860569.1| - 0.36 10.2 5.9 3 7.2 0.1 3.7 4 0 0 4 4 4 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.12 gi|305664281|ref|YP_003860569.1| - 0.8 9.3 2.6 52 3.5 0.1 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|305664281|ref|YP_003860569.1| - 0.9 9.7 4.3 14 5.9 0.1 3.3 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_SprT PF17283.2 gi|305664281|ref|YP_003860569.1| - 1.7 8.6 3.9 8.3 6.4 0.1 3.1 4 0 0 4 4 4 0 SprT-like zinc ribbon domain DUF359 PF04019.12 gi|305664282|ref|YP_003860570.1| - 4.1e-28 97.6 0.0 5.5e-28 97.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Baculo_PEP_C PF04513.12 gi|305664283|ref|YP_003860571.1| - 0.0097 15.9 2.2 0.0097 15.9 2.2 1.6 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2007 PF09413.10 gi|305664283|ref|YP_003860571.1| - 0.02 15.0 0.6 0.073 13.2 0.1 2.1 2 1 0 2 2 2 0 Putative prokaryotic signal transducing protein Arena_ncap_C PF17290.2 gi|305664283|ref|YP_003860571.1| - 0.06 12.7 0.5 0.09 12.1 0.5 1.2 1 0 0 1 1 1 0 Arenavirus nucleocapsid C-terminal domain HypA PF01155.19 gi|305664284|ref|YP_003860572.1| - 1.8e-24 85.9 0.1 2.2e-24 85.6 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Desulfoferrod_N PF06397.12 gi|305664284|ref|YP_003860572.1| - 0.009 15.6 0.8 0.031 13.9 0.1 2.0 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.12 gi|305664284|ref|YP_003860572.1| - 0.022 14.3 1.2 0.46 10.0 0.0 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|305664284|ref|YP_003860572.1| - 0.052 13.5 0.2 3.2 7.8 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain COMP PF11598.8 gi|305664284|ref|YP_003860572.1| - 0.073 13.6 1.4 0.73 10.3 0.1 2.4 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein SpoVAD PF07451.11 gi|305664284|ref|YP_003860572.1| - 0.092 11.4 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) Lar_restr_allev PF14354.6 gi|305664284|ref|YP_003860572.1| - 0.1 13.0 0.4 13 6.3 0.1 2.3 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-H2C2_2 PF13465.6 gi|305664284|ref|YP_003860572.1| - 0.13 12.8 1.1 4.3 7.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain TFIIS_C PF01096.18 gi|305664284|ref|YP_003860572.1| - 0.14 12.1 4.8 5.5 6.9 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.9 gi|305664284|ref|YP_003860572.1| - 0.33 11.1 4.7 0.81 9.8 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.20 gi|305664284|ref|YP_003860572.1| - 0.43 10.6 2.1 5.8 7.0 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin zf-Mss51 PF13824.6 gi|305664284|ref|YP_003860572.1| - 0.45 10.7 1.9 6.3 7.0 0.1 2.4 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.6 gi|305664284|ref|YP_003860572.1| - 0.52 10.1 4.3 6.6 6.6 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|305664284|ref|YP_003860572.1| - 0.94 9.6 3.5 10 6.3 3.5 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|305664284|ref|YP_003860572.1| - 3.3 7.7 7.3 3.2 7.8 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|305664284|ref|YP_003860572.1| - 8.5 6.2 7.1 23 4.8 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain ParA PF10609.9 gi|305664285|ref|YP_003860573.1| - 4.8e-35 121.2 0.0 7.4e-35 120.6 0.0 1.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|305664285|ref|YP_003860573.1| - 2.7e-14 53.3 0.0 3.6e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|305664285|ref|YP_003860573.1| - 7.3e-08 31.9 0.0 1.1e-05 24.8 0.0 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase AAA_31 PF13614.6 gi|305664285|ref|YP_003860573.1| - 1.3e-07 31.8 0.1 9.4e-07 28.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.6 gi|305664285|ref|YP_003860573.1| - 8.9e-05 22.4 0.4 0.057 13.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|305664285|ref|YP_003860573.1| - 0.00042 19.7 0.0 0.00055 19.3 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|305664285|ref|YP_003860573.1| - 0.048 13.1 0.0 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|305664285|ref|YP_003860573.1| - 0.17 11.1 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein HycI PF01750.18 gi|305664286|ref|YP_003860574.1| - 6.6e-10 38.9 0.3 8.6e-10 38.5 0.3 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease NADHdh PF00146.21 gi|305664287|ref|YP_003860575.1| - 6.8e-58 196.3 22.1 8.1e-58 196.1 22.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase ODV-E18 PF10717.9 gi|305664288|ref|YP_003860576.1| - 7.9 6.4 7.3 0.77 9.7 0.5 2.0 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 Proton_antipo_M PF00361.20 gi|305664289|ref|YP_003860577.1| - 4e-48 164.1 25.7 4e-48 164.1 25.7 2.2 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|305664289|ref|YP_003860577.1| - 0.0044 17.1 0.9 0.0044 17.1 0.9 3.9 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDC50 PF03381.15 gi|305664289|ref|YP_003860577.1| - 0.16 11.5 0.6 0.48 9.9 0.6 1.8 1 0 0 1 1 1 0 LEM3 (ligand-effect modulator 3) family / CDC50 family MNHE PF01899.16 gi|305664290|ref|YP_003860578.1| - 2.8e-46 156.9 1.8 3.2e-46 156.7 1.8 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q2 PF00420.24 gi|305664291|ref|YP_003860579.1| - 1.5e-22 79.2 3.8 2.2e-22 78.7 3.8 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Curto_V3 PF07436.11 gi|305664291|ref|YP_003860579.1| - 0.75 10.2 3.8 1.1 9.7 1.0 2.0 2 0 0 2 2 2 0 Curtovirus V3 protein L_HMGIC_fpl PF10242.9 gi|305664291|ref|YP_003860579.1| - 1.5 9.0 6.0 2.5 8.3 3.2 1.9 2 0 0 2 2 2 0 Lipoma HMGIC fusion partner-like protein DUF4538 PF15061.6 gi|305664291|ref|YP_003860579.1| - 1.7 8.5 5.9 0.77 9.5 0.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) MnhB PF04039.13 gi|305664292|ref|YP_003860580.1| - 2.6e-20 73.0 16.5 2.6e-20 73.0 16.5 2.6 3 0 0 3 3 3 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|305664292|ref|YP_003860580.1| - 0.0065 16.0 0.6 0.021 14.4 0.1 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2106) DUF5423 PF17461.2 gi|305664292|ref|YP_003860580.1| - 1.1 8.0 2.4 1.5 7.6 2.4 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5423) DUF4040 PF13244.6 gi|305664293|ref|YP_003860581.1| - 1.1e-15 57.6 3.4 1.1e-15 57.6 3.4 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Trep_Strep PF09605.10 gi|305664293|ref|YP_003860581.1| - 0.013 15.5 0.2 0.013 15.5 0.2 1.7 2 0 0 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF2070 PF09843.9 gi|305664293|ref|YP_003860581.1| - 4.1 5.6 6.7 4.1 5.6 6.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) PhaG_MnhG_YufB PF03334.14 gi|305664294|ref|YP_003860582.1| - 1.1e-17 64.0 11.5 1.5e-17 63.6 11.5 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DDE_5 PF13546.6 gi|305664294|ref|YP_003860582.1| - 0.2 10.9 0.0 0.23 10.8 0.0 1.0 1 0 0 1 1 1 0 DDE superfamily endonuclease MrpF_PhaF PF04066.13 gi|305664295|ref|YP_003860583.1| - 1.6e-12 47.6 2.8 1.6e-12 47.6 2.8 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Oleosin PF01277.17 gi|305664295|ref|YP_003860583.1| - 1.4 8.7 8.4 2.5 7.9 8.3 1.7 1 1 0 1 1 1 0 Oleosin DUF4153 PF13687.6 gi|305664295|ref|YP_003860583.1| - 2 8.0 13.2 4.9 6.7 13.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4153) Fer4 PF00037.27 gi|305664296|ref|YP_003860584.1| - 1.5e-12 46.8 18.1 1.7e-06 27.6 5.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|305664296|ref|YP_003860584.1| - 1.8e-10 41.2 11.5 2.6e-10 40.7 11.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|305664296|ref|YP_003860584.1| - 5.7e-10 39.2 9.4 0.00014 21.9 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|305664296|ref|YP_003860584.1| - 2e-09 37.4 6.6 1.8e-05 24.7 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|305664296|ref|YP_003860584.1| - 4.3e-09 36.4 9.9 6.4e-09 35.8 9.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|305664296|ref|YP_003860584.1| - 5.4e-07 29.4 18.9 0.00011 22.1 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|305664296|ref|YP_003860584.1| - 6.7e-07 29.0 11.9 0.00043 20.2 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|305664296|ref|YP_003860584.1| - 8.4e-07 29.8 23.2 0.00018 22.4 15.1 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|305664296|ref|YP_003860584.1| - 0.0003 21.2 13.7 0.0019 18.6 14.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|305664296|ref|YP_003860584.1| - 0.00049 20.6 12.3 0.028 15.0 14.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|305664296|ref|YP_003860584.1| - 0.0013 19.4 5.9 0.42 11.4 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|305664296|ref|YP_003860584.1| - 0.0015 19.3 5.6 0.0015 19.3 5.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|305664296|ref|YP_003860584.1| - 0.025 14.7 10.1 0.092 12.9 1.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|305664296|ref|YP_003860584.1| - 0.03 15.2 13.2 0.22 12.4 1.0 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|305664296|ref|YP_003860584.1| - 0.091 13.3 15.1 0.15 12.6 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|305664296|ref|YP_003860584.1| - 0.53 10.9 12.5 3.3 8.3 5.3 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Complex1_49kDa PF00346.19 gi|305664297|ref|YP_003860585.1| - 2.4e-70 236.7 0.1 3.5e-47 160.8 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|305664297|ref|YP_003860585.1| - 2.3e-16 59.8 0.7 2.5e-10 39.9 0.0 3.9 3 1 0 3 3 3 3 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|305664298|ref|YP_003860586.1| - 1.2e-18 67.9 0.0 1.3e-18 67.7 0.0 1.0 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|305664299|ref|YP_003860587.1| - 7.5e-30 103.4 0.1 8.7e-30 103.2 0.1 1.0 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Sua5_yciO_yrdC PF01300.18 gi|305664300|ref|YP_003860588.1| - 3.2e-46 157.1 0.0 5.3e-46 156.4 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|305664300|ref|YP_003860588.1| - 2.2e-29 100.9 10.3 1.7e-16 59.7 3.0 2.4 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|305664300|ref|YP_003860588.1| - 3.7e-26 91.8 0.0 3e-25 88.9 0.0 2.2 2 0 0 2 2 2 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|305664300|ref|YP_003860588.1| - 7.7e-18 64.7 0.0 1.4e-17 63.9 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase zf-C4_ClpX PF06689.13 gi|305664300|ref|YP_003860588.1| - 1.6 8.7 4.2 1.1 9.3 0.1 2.7 3 0 0 3 3 3 0 ClpX C4-type zinc finger AIRS_C PF02769.22 gi|305664301|ref|YP_003860589.1| - 2e-22 80.0 0.0 3e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|305664301|ref|YP_003860589.1| - 1.3e-18 67.4 0.1 2.8e-18 66.3 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PASTA PF03793.19 gi|305664301|ref|YP_003860589.1| - 0.069 13.0 0.4 46 4.0 0.1 3.3 2 1 1 3 3 3 0 PASTA domain DAO PF01266.24 gi|305664302|ref|YP_003860590.1| - 6e-06 26.1 0.0 3.8e-05 23.4 0.0 1.8 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|305664302|ref|YP_003860590.1| - 9e-05 22.6 0.0 0.00024 21.3 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|305664302|ref|YP_003860590.1| - 0.0012 17.8 0.0 0.018 13.9 0.0 2.0 2 0 0 2 2 2 1 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|305664302|ref|YP_003860590.1| - 0.047 12.9 0.0 0.13 11.4 0.0 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|305664302|ref|YP_003860590.1| - 0.064 12.0 0.0 0.11 11.1 0.0 1.4 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_9 PF13454.6 gi|305664302|ref|YP_003860590.1| - 0.13 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|305664302|ref|YP_003860590.1| - 0.24 10.6 0.1 0.46 9.7 0.0 1.4 2 0 0 2 2 2 0 FAD binding domain Peptidase_M28 PF04389.17 gi|305664303|ref|YP_003860591.1| - 3e-11 43.4 0.0 5.1e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 DUF4910 PF16254.5 gi|305664303|ref|YP_003860591.1| - 5.9e-09 35.2 0.1 1.9e-08 33.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4910) PA PF02225.22 gi|305664303|ref|YP_003860591.1| - 0.00016 21.7 0.0 0.00032 20.7 0.0 1.5 1 0 0 1 1 1 1 PA domain DUF4974 PF16344.5 gi|305664303|ref|YP_003860591.1| - 0.037 14.0 2.0 6.7 6.8 0.2 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4974) ThiF PF00899.21 gi|305664304|ref|YP_003860592.1| - 1.4e-64 217.8 0.0 1.8e-64 217.4 0.0 1.1 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|305664304|ref|YP_003860592.1| - 0.0041 17.2 0.8 0.016 15.3 0.1 2.1 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|305664304|ref|YP_003860592.1| - 0.022 14.3 0.0 0.036 13.6 0.0 1.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|305664304|ref|YP_003860592.1| - 0.028 13.8 0.1 0.53 9.6 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|305664304|ref|YP_003860592.1| - 0.084 13.3 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding PglD_N PF17836.1 gi|305664304|ref|YP_003860592.1| - 0.37 11.5 2.2 4.6 8.0 1.2 2.4 2 1 0 2 2 2 0 PglD N-terminal domain tRNA_bind_4 PF18490.1 gi|305664305|ref|YP_003860593.1| - 8.3e-28 97.2 3.0 1.3e-27 96.6 3.0 1.2 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|305664305|ref|YP_003860593.1| - 5e-12 46.2 0.0 9.6e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) PAS_3 PF08447.12 gi|305664305|ref|YP_003860593.1| - 0.041 14.2 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 PAS fold OMPdecase PF00215.24 gi|305664306|ref|YP_003860594.1| - 1.2e-15 57.8 1.3 2.2e-15 56.9 1.3 1.5 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family ThiG PF05690.14 gi|305664306|ref|YP_003860594.1| - 3.1e-08 33.3 0.1 4.6e-08 32.7 0.1 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|305664306|ref|YP_003860594.1| - 2.5e-06 27.1 0.6 6.1e-06 25.9 0.2 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.19 gi|305664306|ref|YP_003860594.1| - 0.00012 21.6 2.5 0.00016 21.1 0.7 2.2 2 1 0 2 2 2 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|305664306|ref|YP_003860594.1| - 0.00018 21.4 0.7 0.00061 19.6 0.3 1.9 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Pterin_bind PF00809.22 gi|305664306|ref|YP_003860594.1| - 0.00023 20.9 0.4 0.097 12.3 0.1 2.8 2 1 1 3 3 3 1 Pterin binding enzyme Trp_syntA PF00290.20 gi|305664306|ref|YP_003860594.1| - 0.00028 19.8 0.8 0.4 9.5 0.0 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain NanE PF04131.14 gi|305664306|ref|YP_003860594.1| - 0.00066 18.9 2.0 0.0019 17.4 0.9 2.3 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|305664306|ref|YP_003860594.1| - 0.0018 17.5 0.2 0.0023 17.2 0.2 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Aldolase PF01081.19 gi|305664306|ref|YP_003860594.1| - 0.0031 16.9 0.2 0.19 11.1 0.0 2.2 2 0 0 2 2 2 1 KDPG and KHG aldolase PEP_hydrolase PF09370.10 gi|305664306|ref|YP_003860594.1| - 0.0084 15.4 0.1 0.22 10.7 0.0 2.5 2 1 0 2 2 2 1 Phosphoenolpyruvate hydrolase-like ADH_zinc_N PF00107.26 gi|305664306|ref|YP_003860594.1| - 0.013 15.5 0.1 0.3 11.0 0.1 2.6 2 1 0 2 2 2 0 Zinc-binding dehydrogenase 4HFCP_synth PF04476.13 gi|305664306|ref|YP_003860594.1| - 0.026 14.2 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 4-HFC-P synthase TMP-TENI PF02581.17 gi|305664306|ref|YP_003860594.1| - 0.032 13.6 2.2 0.13 11.5 0.4 2.3 1 1 0 2 2 2 0 Thiamine monophosphate synthase PcrB PF01884.17 gi|305664306|ref|YP_003860594.1| - 0.056 12.9 1.3 0.19 11.1 0.1 1.9 2 0 0 2 2 2 0 PcrB family PEP_mutase PF13714.6 gi|305664306|ref|YP_003860594.1| - 0.065 12.7 0.4 0.71 9.3 0.1 2.2 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase HMGL-like PF00682.19 gi|305664306|ref|YP_003860594.1| - 0.096 12.2 0.1 0.21 11.1 0.1 1.8 1 1 0 1 1 1 0 HMGL-like Dus PF01207.17 gi|305664306|ref|YP_003860594.1| - 0.18 10.8 0.2 0.45 9.6 0.0 1.7 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) FeS_assembly_P PF01883.19 gi|305664307|ref|YP_003860595.1| - 6.8e-19 67.8 0.0 8.2e-19 67.6 0.0 1.1 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Proteasome PF00227.26 gi|305664308|ref|YP_003860596.1| - 6e-52 175.9 2.9 6.7e-52 175.7 2.9 1.0 1 0 0 1 1 1 1 Proteasome subunit NifU_N PF01592.16 gi|305664308|ref|YP_003860596.1| - 0.084 13.0 0.1 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 NifU-like N terminal domain Endonuclease_5 PF04493.14 gi|305664309|ref|YP_003860597.1| - 1.2e-55 188.3 0.1 1.4e-55 188.1 0.1 1.0 1 0 0 1 1 1 1 Endonuclease V PBP_like PF12727.7 gi|305664310|ref|YP_003860598.1| - 1.1e-50 171.5 0.0 2.1e-50 170.6 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|305664310|ref|YP_003860598.1| - 1.2e-37 129.1 0.1 1.8e-37 128.5 0.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|305664310|ref|YP_003860598.1| - 1.1e-26 93.2 0.0 2.7e-26 92.0 0.0 1.7 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|305664310|ref|YP_003860598.1| - 3e-14 52.9 0.0 8.2e-14 51.5 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|305664310|ref|YP_003860598.1| - 5.9e-08 32.7 0.0 9.8e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|305664310|ref|YP_003860598.1| - 0.0039 16.8 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein HTH_50 PF18024.1 gi|305664310|ref|YP_003860598.1| - 0.057 13.0 0.0 0.21 11.2 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1829 PF08862.10 gi|305664310|ref|YP_003860598.1| - 0.15 12.5 0.5 4.8 7.7 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF1829 MoeA_N PF03453.17 gi|305664311|ref|YP_003860599.1| - 2.6e-35 121.5 0.0 4.4e-35 120.8 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|305664311|ref|YP_003860599.1| - 9.3e-24 83.7 0.1 1.4e-23 83.2 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|305664311|ref|YP_003860599.1| - 7e-15 55.0 0.0 1.3e-14 54.1 0.0 1.5 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) 7TMR-HDED PF07697.11 gi|305664311|ref|YP_003860599.1| - 0.26 11.4 0.1 1.5 8.9 0.0 2.0 2 0 0 2 2 2 0 7TM-HD extracellular HhH-GPD PF00730.25 gi|305664312|ref|YP_003860600.1| - 8.2e-15 55.2 0.0 1.1e-14 54.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|305664312|ref|YP_003860600.1| - 0.00052 20.3 8.3 0.00096 19.4 8.3 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Lectin_C_term PF18022.1 gi|305664312|ref|YP_003860600.1| - 0.079 13.4 0.0 0.17 12.4 0.0 1.7 1 1 0 1 1 1 0 Ricin-type beta-trefoil lectin C-terminal domain HHH PF00633.23 gi|305664312|ref|YP_003860600.1| - 0.17 11.8 0.0 4.1 7.4 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif Acid_phosphat_B PF03767.14 gi|305664313|ref|YP_003860601.1| - 8.4e-05 22.3 0.0 0.00011 21.9 0.0 1.1 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.6 gi|305664313|ref|YP_003860601.1| - 0.0047 17.0 0.0 0.023 14.8 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Glycos_transf_2 PF00535.26 gi|305664314|ref|YP_003860602.1| - 2.9e-25 89.0 0.1 5.8e-25 88.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|305664314|ref|YP_003860602.1| - 7.3e-21 74.6 7.2 1.3e-20 73.8 7.2 1.4 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|305664314|ref|YP_003860602.1| - 0.00051 20.0 0.0 0.0009 19.2 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|305664314|ref|YP_003860602.1| - 0.0044 16.5 0.1 0.02 14.4 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferase family 21 NTP_transferase PF00483.23 gi|305664315|ref|YP_003860603.1| - 3.8e-35 121.7 0.0 4.4e-35 121.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|305664315|ref|YP_003860603.1| - 9.1e-11 42.4 0.0 1.4e-10 41.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|305664315|ref|YP_003860603.1| - 0.0019 18.0 0.0 0.004 16.9 0.0 1.5 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.6 gi|305664315|ref|YP_003860603.1| - 0.0058 16.5 0.0 0.016 15.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4224) PHD PF00628.29 gi|305664316|ref|YP_003860604.1| - 0.00019 21.2 3.7 0.00027 20.7 3.7 1.3 1 0 0 1 1 1 1 PHD-finger C1_1 PF00130.22 gi|305664316|ref|YP_003860604.1| - 0.0002 21.2 1.0 0.0003 20.6 1.0 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_2 PF03107.16 gi|305664316|ref|YP_003860604.1| - 0.00039 20.7 2.8 0.00061 20.1 2.8 1.3 1 0 0 1 1 1 1 C1 domain Prok-RING_1 PF14446.6 gi|305664316|ref|YP_003860604.1| - 0.0015 18.4 6.2 0.0015 18.4 6.2 1.4 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 Zf_RING PF16744.5 gi|305664316|ref|YP_003860604.1| - 0.0065 16.6 5.6 0.0071 16.4 5.5 1.3 1 1 0 1 1 1 1 KIAA1045 RING finger zf-HC5HC2H PF13771.6 gi|305664316|ref|YP_003860604.1| - 0.0084 16.3 2.1 0.015 15.6 2.1 1.4 1 0 0 1 1 1 1 PHD-like zinc-binding domain Rad50_zn_hook PF04423.14 gi|305664316|ref|YP_003860604.1| - 0.0091 15.8 0.3 0.58 10.0 0.1 2.3 2 0 0 2 2 2 1 Rad50 zinc hook motif zf-RING_2 PF13639.6 gi|305664316|ref|YP_003860604.1| - 0.014 15.7 3.4 0.021 15.1 3.4 1.3 1 0 0 1 1 1 0 Ring finger domain PHD_4 PF16866.5 gi|305664316|ref|YP_003860604.1| - 0.016 15.3 5.8 0.081 13.0 5.7 2.0 1 1 1 2 2 2 0 PHD-finger PHD_2 PF13831.6 gi|305664316|ref|YP_003860604.1| - 0.017 14.7 1.1 0.017 14.7 1.1 1.8 2 0 0 2 2 2 0 PHD-finger Zn_ribbon_17 PF17120.5 gi|305664316|ref|YP_003860604.1| - 0.049 13.3 2.5 0.074 12.7 2.5 1.3 1 0 0 1 1 1 0 Zinc-ribbon, C4HC2 type zf-RING-like PF08746.11 gi|305664316|ref|YP_003860604.1| - 0.075 13.3 2.6 0.17 12.2 2.6 1.7 1 1 0 1 1 1 0 RING-like domain RecR PF02132.15 gi|305664316|ref|YP_003860604.1| - 0.48 10.0 5.5 3.4 7.3 0.5 2.5 1 1 1 2 2 2 0 RecR protein ABC_tran PF00005.27 gi|305664317|ref|YP_003860605.1| - 3.9e-33 114.9 0.0 5.2e-33 114.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|305664317|ref|YP_003860605.1| - 5.7e-08 32.9 0.1 0.0086 15.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|305664317|ref|YP_003860605.1| - 3.8e-07 29.8 0.1 0.00013 21.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|305664317|ref|YP_003860605.1| - 0.00041 20.6 0.5 0.007 16.6 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|305664317|ref|YP_003860605.1| - 0.00091 18.9 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|305664317|ref|YP_003860605.1| - 0.0015 18.5 0.0 0.0055 16.6 0.0 1.8 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|305664317|ref|YP_003860605.1| - 0.0023 18.3 0.1 0.0028 18.1 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|305664317|ref|YP_003860605.1| - 0.0075 16.8 0.1 0.014 15.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|305664317|ref|YP_003860605.1| - 0.0099 16.0 0.0 0.094 12.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|305664317|ref|YP_003860605.1| - 0.013 15.4 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|305664317|ref|YP_003860605.1| - 0.024 13.7 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Cytidylate_kin PF02224.18 gi|305664317|ref|YP_003860605.1| - 0.026 14.2 0.1 0.062 13.0 0.1 1.6 2 0 0 2 2 2 0 Cytidylate kinase SbcCD_C PF13558.6 gi|305664317|ref|YP_003860605.1| - 0.03 14.5 0.1 0.64 10.3 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|305664317|ref|YP_003860605.1| - 0.036 13.2 0.1 0.069 12.3 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|305664317|ref|YP_003860605.1| - 0.052 13.5 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea KAP_NTPase PF07693.14 gi|305664317|ref|YP_003860605.1| - 0.062 12.5 0.0 0.062 12.5 0.0 1.2 1 1 0 1 1 1 0 KAP family P-loop domain G-alpha PF00503.20 gi|305664317|ref|YP_003860605.1| - 0.066 12.4 0.0 0.075 12.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|305664317|ref|YP_003860605.1| - 0.067 13.7 0.3 0.17 12.4 0.2 1.8 2 1 0 2 2 1 0 AAA domain MeaB PF03308.16 gi|305664317|ref|YP_003860605.1| - 0.084 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|305664317|ref|YP_003860605.1| - 0.099 12.5 0.2 0.2 11.6 0.1 1.5 2 0 0 2 2 1 0 NACHT domain AAA_15 PF13175.6 gi|305664317|ref|YP_003860605.1| - 0.12 12.0 0.0 5.6 6.6 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|305664317|ref|YP_003860605.1| - 0.12 12.0 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|305664317|ref|YP_003860605.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family cobW PF02492.19 gi|305664317|ref|YP_003860605.1| - 0.15 11.6 0.1 0.21 11.1 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|305664317|ref|YP_003860605.1| - 0.17 11.6 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|305664317|ref|YP_003860605.1| - 0.26 11.1 0.8 0.87 9.4 0.2 1.9 1 1 1 2 2 2 0 Deoxynucleoside kinase VirB3 PF05101.13 gi|305664318|ref|YP_003860606.1| - 2.9 8.2 12.9 1.2 9.5 5.9 2.2 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein DUF3670 PF12419.8 gi|305664320|ref|YP_003860608.1| - 0.16 11.8 0.0 0.27 11.1 0.0 1.2 1 0 0 1 1 1 0 SNF2 Helicase protein Auto_anti-p27 PF06677.12 gi|305664321|ref|YP_003860609.1| - 3.1e-12 46.4 0.1 5.1e-12 45.7 0.1 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|305664321|ref|YP_003860609.1| - 0.0027 17.7 1.9 0.0057 16.7 1.9 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|305664321|ref|YP_003860609.1| - 0.095 12.2 0.7 0.23 11.0 0.7 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding PapG_C PF03628.13 gi|305664321|ref|YP_003860609.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 PapG chaperone-binding domain Chordopox_A30L PF06015.12 gi|305664321|ref|YP_003860609.1| - 0.11 12.3 0.1 0.11 12.3 0.1 1.6 2 0 0 2 2 2 0 Chordopoxvirus A30L protein Rad50_zn_hook PF04423.14 gi|305664321|ref|YP_003860609.1| - 0.49 10.3 0.0 0.49 10.3 0.0 2.5 3 0 0 3 3 3 0 Rad50 zinc hook motif DUF126 PF01989.16 gi|305664322|ref|YP_003860610.1| - 5.5e-27 93.4 1.5 1.1e-26 92.4 0.2 1.9 2 0 0 2 2 2 1 Aconitase X swivel domain DDR_swiveling PF18427.1 gi|305664322|ref|YP_003860610.1| - 0.05 13.6 0.0 0.072 13.1 0.0 1.3 1 0 0 1 1 1 0 DD-reactivating factor swiveling domain DUF521 PF04412.13 gi|305664323|ref|YP_003860611.1| - 9.8e-101 337.4 0.0 1.2e-100 337.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.16 gi|305664324|ref|YP_003860612.1| - 5.4e-76 256.1 0.0 6e-76 255.9 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CLP1_P PF16575.5 gi|305664325|ref|YP_003860613.1| - 2.8e-36 125.1 0.0 4.1e-36 124.6 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|305664325|ref|YP_003860613.1| - 0.00024 21.2 0.0 0.00078 19.5 0.0 2.1 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain PduV-EutP PF10662.9 gi|305664325|ref|YP_003860613.1| - 0.0052 16.5 0.1 0.24 11.1 0.1 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FtsK_SpoIIIE PF01580.18 gi|305664325|ref|YP_003860613.1| - 0.12 11.8 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF460 PF04312.13 gi|305664326|ref|YP_003860614.1| - 0.00041 20.1 0.4 0.00077 19.2 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) CoA_binding_3 PF13727.6 gi|305664326|ref|YP_003860614.1| - 0.062 13.3 0.4 0.68 9.9 0.1 2.2 2 0 0 2 2 2 0 CoA-binding domain CDP-OH_P_transf PF01066.21 gi|305664327|ref|YP_003860615.1| - 2.2e-14 53.9 1.7 2.2e-14 53.9 1.7 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Ribosomal_S26e PF01283.19 gi|305664328|ref|YP_003860616.1| - 3.1e-24 85.5 3.2 3.5e-24 85.3 3.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e Auto_anti-p27 PF06677.12 gi|305664328|ref|YP_003860616.1| - 0.024 14.8 5.9 0.71 10.1 0.7 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|305664328|ref|YP_003860616.1| - 0.026 14.0 0.6 0.026 14.0 0.6 1.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|305664328|ref|YP_003860616.1| - 0.027 14.6 0.2 1.2 9.4 0.1 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF2116 PF09889.9 gi|305664328|ref|YP_003860616.1| - 0.032 14.2 0.2 0.032 14.2 0.2 1.9 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) tRNA-synt_2b PF00587.25 gi|305664329|ref|YP_003860617.1| - 5.6e-23 81.8 0.1 1.3e-22 80.7 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|305664329|ref|YP_003860617.1| - 5e-17 61.8 1.0 8.9e-17 61.0 0.4 1.8 2 0 0 2 2 2 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|305664329|ref|YP_003860617.1| - 2.3e-11 43.7 0.0 4.1e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal WIYLD PF10440.9 gi|305664329|ref|YP_003860617.1| - 0.0064 16.3 0.6 0.14 11.9 0.3 3.0 3 0 0 3 3 3 1 Ubiquitin-binding WIYLD domain Elf1 PF05129.13 gi|305664329|ref|YP_003860617.1| - 0.13 12.3 0.4 2.4 8.3 0.0 2.7 3 0 0 3 3 3 0 Transcription elongation factor Elf1 like GCD14 PF08704.10 gi|305664330|ref|YP_003860618.1| - 7.3e-31 107.7 0.0 1.6e-28 100.0 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|305664330|ref|YP_003860618.1| - 2.5e-12 47.0 0.0 3.3e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|305664330|ref|YP_003860618.1| - 3.2e-09 36.8 0.0 4.7e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|305664330|ref|YP_003860618.1| - 5.9e-07 30.1 0.0 1.1e-06 29.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|305664330|ref|YP_003860618.1| - 1.3e-06 27.7 0.0 2e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Ubie_methyltran PF01209.18 gi|305664330|ref|YP_003860618.1| - 2.1e-05 24.0 0.0 3.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|305664330|ref|YP_003860618.1| - 0.00012 21.9 0.0 0.0034 17.2 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|305664330|ref|YP_003860618.1| - 0.00014 21.5 0.0 0.0084 15.7 0.0 2.1 1 1 1 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.6 gi|305664330|ref|YP_003860618.1| - 0.0002 22.3 0.0 0.00047 21.2 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|305664330|ref|YP_003860618.1| - 0.00039 21.1 0.0 0.0016 19.1 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|305664330|ref|YP_003860618.1| - 0.00065 19.7 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|305664330|ref|YP_003860618.1| - 0.0012 18.5 0.0 0.0018 18.0 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|305664330|ref|YP_003860618.1| - 0.0022 17.6 0.0 0.0035 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|305664330|ref|YP_003860618.1| - 0.0025 18.4 0.0 0.0047 17.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|305664330|ref|YP_003860618.1| - 0.0057 16.1 0.0 0.0099 15.4 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase PrmA PF06325.13 gi|305664330|ref|YP_003860618.1| - 0.014 14.8 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Fibrillarin PF01269.17 gi|305664330|ref|YP_003860618.1| - 0.036 13.2 0.0 0.05 12.7 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_16 PF10294.9 gi|305664330|ref|YP_003860618.1| - 0.088 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase CMAS PF02353.20 gi|305664330|ref|YP_003860618.1| - 0.095 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase RHH_1 PF01402.21 gi|305664331|ref|YP_003860619.1| - 2.7e-11 43.0 1.2 4.4e-11 42.3 1.2 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParD_antitoxin PF03693.14 gi|305664331|ref|YP_003860619.1| - 9.2e-06 26.0 0.0 1e-05 25.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RHH_8 PF17723.1 gi|305664331|ref|YP_003860619.1| - 3.4e-05 24.0 0.1 4.2e-05 23.7 0.1 1.2 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|305664331|ref|YP_003860619.1| - 0.00014 21.7 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB Ribosomal_S25 PF03297.15 gi|305664332|ref|YP_003860620.1| - 3.7e-16 59.2 6.5 4.3e-16 59.0 6.5 1.1 1 0 0 1 1 1 1 S25 ribosomal protein HTH_Crp_2 PF13545.6 gi|305664332|ref|YP_003860620.1| - 0.0084 16.1 1.0 0.013 15.5 0.5 1.6 1 1 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|305664332|ref|YP_003860620.1| - 0.01 15.7 0.4 0.018 14.9 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB JHD PF17811.1 gi|305664332|ref|YP_003860620.1| - 0.016 15.7 1.9 0.15 12.6 1.0 2.0 2 0 0 2 2 2 0 Jumonji helical domain CN_hydrolase PF00795.22 gi|305664333|ref|YP_003860621.1| - 4e-07 29.6 0.0 7.1e-07 28.8 0.0 1.4 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase Topoisom_bac PF01131.20 gi|305664334|ref|YP_003860622.1| - 3.6e-63 214.0 0.0 7.1e-61 206.4 0.0 2.2 1 1 1 2 2 2 2 DNA topoisomerase Toprim PF01751.22 gi|305664334|ref|YP_003860622.1| - 3.2e-22 78.7 0.0 9.8e-22 77.1 0.0 1.9 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|305664334|ref|YP_003860622.1| - 1.5e-09 37.9 0.2 6.6e-09 35.8 0.1 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|305664334|ref|YP_003860622.1| - 1.1e-06 28.8 0.6 3.8e-06 27.0 0.3 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit zf_Rg PF17915.1 gi|305664334|ref|YP_003860622.1| - 1.8e-05 24.0 0.8 8e-05 22.0 0.8 2.1 1 0 0 1 1 1 1 Reverse gyrase zinc finger Helicase_C PF00271.31 gi|305664334|ref|YP_003860622.1| - 6.8e-05 23.2 0.4 0.12 12.7 0.1 4.6 4 0 0 4 4 4 1 Helicase conserved C-terminal domain Toprim_4 PF13662.6 gi|305664334|ref|YP_003860622.1| - 0.0027 18.2 0.1 0.043 14.3 0.0 2.9 3 0 0 3 3 3 1 Toprim domain HypA PF01155.19 gi|305664334|ref|YP_003860622.1| - 0.022 14.8 0.2 0.5 10.4 0.0 2.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-dskA_traR PF01258.17 gi|305664334|ref|YP_003860622.1| - 0.14 12.1 6.8 0.57 10.2 1.4 3.0 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.7 gi|305664334|ref|YP_003860622.1| - 0.45 10.6 3.4 5.4 7.1 0.3 2.4 2 0 0 2 2 2 0 Double zinc ribbon AAA PF00004.29 gi|305664334|ref|YP_003860622.1| - 0.63 10.5 3.4 6.3 7.2 3.4 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF35_N PF12172.8 gi|305664334|ref|YP_003860622.1| - 0.71 9.8 1.8 2.3 8.2 1.8 1.9 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|305664334|ref|YP_003860622.1| - 1.1 9.4 4.5 0.6 10.3 0.7 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4pol PF14260.6 gi|305664334|ref|YP_003860622.1| - 1.2 9.6 3.2 33 5.1 0.2 2.5 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-RRN7 PF11781.8 gi|305664334|ref|YP_003860622.1| - 3.8 7.3 4.4 12 5.7 0.3 2.6 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|305664334|ref|YP_003860622.1| - 5.7 6.6 4.9 8.5 6.0 0.1 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding Ribonuc_L-PSP PF01042.21 gi|305664335|ref|YP_003860623.1| - 6.2e-39 132.7 0.0 6.9e-39 132.6 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Cupin_2 PF07883.11 gi|305664336|ref|YP_003860624.1| - 1.3e-13 50.5 0.1 1.6e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|305664336|ref|YP_003860624.1| - 3.4e-06 27.0 0.1 4.3e-06 26.7 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|305664336|ref|YP_003860624.1| - 2.4e-05 24.3 0.0 3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_7 PF12973.7 gi|305664336|ref|YP_003860624.1| - 0.00065 19.6 0.0 0.00076 19.4 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_3 PF05899.12 gi|305664336|ref|YP_003860624.1| - 0.16 11.7 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) CarboxypepD_reg PF13620.6 gi|305664337|ref|YP_003860625.1| - 2.9e-05 24.3 0.0 4.5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CBFD_NFYB_HMF PF00808.23 gi|305664337|ref|YP_003860625.1| - 0.0074 16.6 0.4 0.025 14.9 0.0 1.9 2 0 0 2 2 2 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DUF4198 PF10670.9 gi|305664337|ref|YP_003860625.1| - 0.04 14.3 0.0 0.071 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) bMG3 PF11974.8 gi|305664337|ref|YP_003860625.1| - 0.069 13.2 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain TPD52 PF04201.15 gi|305664337|ref|YP_003860625.1| - 0.081 12.5 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Tumour protein D52 family YtzH PF14165.6 gi|305664337|ref|YP_003860625.1| - 0.11 12.9 0.2 0.28 11.6 0.0 1.7 2 0 0 2 2 2 0 YtzH-like protein Big_1 PF02369.16 gi|305664337|ref|YP_003860625.1| - 0.15 12.1 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Trypsin_2 PF13365.6 gi|305664338|ref|YP_003860626.1| - 4.2e-10 40.7 0.0 6.3e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|305664338|ref|YP_003860626.1| - 0.0024 18.2 0.0 0.0049 17.2 0.0 1.5 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|305664338|ref|YP_003860626.1| - 0.0034 17.2 0.1 1.1 9.1 0.0 2.3 2 0 0 2 2 2 2 Trypsin PDZ PF00595.24 gi|305664338|ref|YP_003860626.1| - 0.039 14.3 0.0 0.083 13.2 0.0 1.7 1 0 0 1 1 1 0 PDZ domain H_lectin PF09458.10 gi|305664338|ref|YP_003860626.1| - 0.11 12.7 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 H-type lectin domain PDZ_6 PF17820.1 gi|305664338|ref|YP_003860626.1| - 0.14 12.0 0.1 0.34 10.8 0.1 1.6 1 0 0 1 1 1 0 PDZ domain ParA PF10609.9 gi|305664339|ref|YP_003860627.1| - 5.8e-71 238.8 0.1 7.3e-71 238.5 0.1 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|305664339|ref|YP_003860627.1| - 8.1e-12 45.3 0.0 2.2e-11 43.9 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|305664339|ref|YP_003860627.1| - 2.9e-07 30.0 1.2 6.9e-07 28.7 1.2 1.6 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|305664339|ref|YP_003860627.1| - 3.3e-07 30.4 1.0 9e-06 25.7 1.0 2.4 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|305664339|ref|YP_003860627.1| - 0.00027 20.3 0.0 0.00046 19.6 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|305664339|ref|YP_003860627.1| - 0.025 14.1 0.3 0.1 12.1 0.3 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|305664339|ref|YP_003860627.1| - 0.032 13.8 0.1 0.06 13.0 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|305664339|ref|YP_003860627.1| - 0.035 14.0 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase Fer4_NifH PF00142.18 gi|305664339|ref|YP_003860627.1| - 0.088 12.2 0.4 0.24 10.8 0.1 1.8 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|305664339|ref|YP_003860627.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein IstB_IS21 PF01695.17 gi|305664339|ref|YP_003860627.1| - 0.15 11.8 0.1 0.44 10.3 0.1 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|305664339|ref|YP_003860627.1| - 0.16 11.1 0.2 0.27 10.4 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_26 PF13500.6 gi|305664339|ref|YP_003860627.1| - 0.2 11.5 1.4 3 7.6 0.5 2.2 2 0 0 2 2 2 0 AAA domain Acylphosphatase PF00708.18 gi|305664340|ref|YP_003860628.1| - 1.8e-15 57.1 0.0 2e-15 56.9 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.12 gi|305664340|ref|YP_003860628.1| - 0.02 15.0 0.0 0.027 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) Phage_integr_3 PF16795.5 gi|305664341|ref|YP_003860629.1| - 4.9e-22 78.5 5.3 1.3e-21 77.1 0.8 3.0 2 1 0 2 2 2 1 Archaeal phage integrase Phage_int_SAM_5 PF13102.6 gi|305664341|ref|YP_003860629.1| - 0.00082 19.7 4.5 0.0028 18.0 1.3 3.1 1 1 0 2 2 2 1 Phage integrase SAM-like domain HTH_psq PF05225.16 gi|305664341|ref|YP_003860629.1| - 0.0019 17.9 0.0 0.0043 16.7 0.0 1.6 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_3 PF01381.22 gi|305664341|ref|YP_003860629.1| - 0.0019 18.2 0.0 0.026 14.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix DUF3991 PF13154.6 gi|305664341|ref|YP_003860629.1| - 0.023 15.1 0.1 0.95 9.9 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3991) DUF4441 PF14536.6 gi|305664341|ref|YP_003860629.1| - 0.39 10.9 4.5 0.57 10.4 3.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4441) GRIP PF01465.20 gi|305664341|ref|YP_003860629.1| - 0.56 10.2 3.7 1.7 8.6 0.0 3.2 3 0 0 3 3 3 0 GRIP domain DUF5376 PF17346.2 gi|305664342|ref|YP_003860630.1| - 0.0048 17.2 0.3 0.0054 17.1 0.3 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5376) HATPase_c_2 PF13581.6 gi|305664344|ref|YP_003860632.1| - 0.072 13.0 0.0 0.076 13.0 0.0 1.1 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain UBN_AB PF14075.6 gi|305664347|ref|YP_003860635.1| - 0.0023 17.7 0.3 0.004 16.9 0.3 1.3 1 0 0 1 1 1 1 Ubinuclein conserved middle domain MSC PF09402.10 gi|305664347|ref|YP_003860635.1| - 0.065 12.7 0.0 0.065 12.7 0.0 1.5 2 0 0 2 2 2 0 Man1-Src1p-C-terminal domain FtsL PF04999.13 gi|305664347|ref|YP_003860635.1| - 0.15 12.0 0.0 0.15 12.0 0.0 2.4 3 0 0 3 3 3 0 Cell division protein FtsL CBP_BcsF PF11120.8 gi|305664347|ref|YP_003860635.1| - 0.24 11.6 1.9 0.62 10.2 1.9 1.7 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsF ATC_hydrolase PF14196.6 gi|305664347|ref|YP_003860635.1| - 1.9 9.2 3.7 0.97 10.2 0.2 2.0 2 0 0 2 2 2 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Lact-deh-memb PF09330.11 gi|305664348|ref|YP_003860636.1| - 0.049 13.0 0.6 0.081 12.2 0.6 1.4 1 0 0 1 1 1 0 D-lactate dehydrogenase, membrane binding Arch_fla_DE PF04659.13 gi|305664349|ref|YP_003860637.1| - 0.14 12.0 0.8 0.3 11.0 0.0 1.8 2 0 0 2 2 2 0 Archaeal flagella protein RNA_pol_I_TF PF04090.12 gi|305664352|ref|YP_003860640.1| - 0.02 14.4 0.0 0.022 14.3 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase I specific initiation factor DUF3791 PF12668.7 gi|305664354|ref|YP_003860642.1| - 0.044 13.8 0.0 0.37 10.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3791) DUF705 PF05152.12 gi|305664354|ref|YP_003860642.1| - 0.075 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF705) DNA_pol_B PF00136.21 gi|305664355|ref|YP_003860643.1| - 4.5e-13 48.7 2.6 4.2e-12 45.5 2.6 2.1 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|305664355|ref|YP_003860643.1| - 1.4e-06 27.7 0.2 0.0036 16.5 0.1 2.7 2 1 0 2 2 2 2 DNA polymerase family B, exonuclease domain DNA_pol_A_exo1 PF01612.20 gi|305664355|ref|YP_003860643.1| - 0.024 14.4 0.0 0.066 12.9 0.0 1.7 1 1 0 1 1 1 0 3'-5' exonuclease DUF3223 PF11523.8 gi|305664358|ref|YP_003860646.1| - 3.1e-08 34.3 0.1 5.6e-08 33.5 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3223) AP_endonuc_2 PF01261.24 gi|305664359|ref|YP_003860647.1| - 2.6e-23 82.6 0.0 3.2e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.19 gi|305664359|ref|YP_003860647.1| - 0.073 12.6 0.0 0.13 11.8 0.0 1.5 1 1 0 1 1 1 0 HMGL-like PdxJ PF03740.13 gi|305664359|ref|YP_003860647.1| - 0.08 12.0 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ HTH_12 PF08461.10 gi|305664360|ref|YP_003860648.1| - 0.015 15.3 0.0 0.035 14.0 0.0 1.7 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_33 PF13592.6 gi|305664360|ref|YP_003860648.1| - 0.025 14.2 0.1 0.09 12.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix FAST_1 PF06743.15 gi|305664360|ref|YP_003860648.1| - 0.053 13.5 0.1 0.38 10.7 0.0 2.1 2 0 0 2 2 2 0 FAST kinase-like protein, subdomain 1 HTH_24 PF13412.6 gi|305664360|ref|YP_003860648.1| - 0.081 12.5 0.1 0.3 10.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|305664360|ref|YP_003860648.1| - 0.1 12.5 0.0 0.25 11.3 0.0 1.7 1 1 0 1 1 1 0 MarR family MarR PF01047.22 gi|305664361|ref|YP_003860649.1| - 0.00054 19.8 0.0 0.0066 16.3 0.0 2.8 2 1 0 2 2 2 1 MarR family TrmB PF01978.19 gi|305664361|ref|YP_003860649.1| - 0.0051 16.7 1.7 0.021 14.7 0.4 2.7 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|305664361|ref|YP_003860649.1| - 0.02 14.8 2.7 0.05 13.6 0.1 3.0 4 1 1 5 5 5 0 Ribonuclease R winged-helix domain HTH_36 PF13730.6 gi|305664361|ref|YP_003860649.1| - 0.026 14.5 3.2 0.06 13.3 0.1 3.1 4 0 0 4 4 4 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|305664361|ref|YP_003860649.1| - 0.052 13.3 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_DeoR PF08220.12 gi|305664361|ref|YP_003860649.1| - 0.056 13.2 0.0 0.18 11.6 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|305664361|ref|YP_003860649.1| - 0.074 13.0 0.1 0.47 10.5 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Cdc6_C PF09079.11 gi|305664361|ref|YP_003860649.1| - 0.075 13.0 0.1 0.83 9.7 0.1 2.5 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain Penicillinase_R PF03965.16 gi|305664361|ref|YP_003860649.1| - 0.086 13.2 0.1 0.29 11.5 0.0 1.9 2 0 0 2 2 2 0 Penicillinase repressor DASH_Spc34 PF08657.10 gi|305664361|ref|YP_003860649.1| - 0.14 12.0 0.3 0.22 11.3 0.3 1.3 1 0 0 1 1 1 0 DASH complex subunit Spc34 DUF4898 PF16239.5 gi|305664363|ref|YP_003860651.1| - 0.015 15.2 1.1 0.03 14.3 1.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4898) DUF2642 PF10842.8 gi|305664364|ref|YP_003860652.1| - 0.036 13.9 0.0 0.074 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2642) DUF3349 PF11829.8 gi|305664367|ref|YP_003860655.1| - 0.0027 18.4 0.0 0.0047 17.7 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3349) DUF3140 PF11338.8 gi|305664367|ref|YP_003860655.1| - 0.15 12.5 0.1 0.27 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3140) DUF805 PF05656.14 gi|305664368|ref|YP_003860656.1| - 0.0069 16.8 2.8 0.0079 16.6 2.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF805) Peptidase_M48_N PF16491.5 gi|305664368|ref|YP_003860656.1| - 0.057 13.3 2.3 0.064 13.1 2.3 1.2 1 0 0 1 1 1 0 CAAX prenyl protease N-terminal, five membrane helices DUF1097 PF06496.11 gi|305664368|ref|YP_003860656.1| - 0.1 12.7 5.7 2.1 8.4 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1097) CPP1-like PF11833.8 gi|305664368|ref|YP_003860656.1| - 0.96 9.1 6.8 1.2 8.8 6.8 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2283 PF10049.9 gi|305664371|ref|YP_003860659.1| - 5.9e-16 58.4 1.3 8.8e-16 57.9 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Transposase_mut PF00872.18 gi|305664371|ref|YP_003860659.1| - 0.11 11.4 0.1 0.11 11.3 0.1 1.1 1 0 0 1 1 1 0 Transposase, Mutator family FMN_red PF03358.15 gi|305664373|ref|YP_003860661.1| - 2.1e-29 102.3 0.0 2.7e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|305664373|ref|YP_003860661.1| - 5.2e-12 45.9 0.0 8.2e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Asp_protease_2 PF13650.6 gi|305664374|ref|YP_003860662.1| - 1.9e-06 28.4 0.0 4.3e-06 27.3 0.0 1.5 1 1 1 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|305664374|ref|YP_003860662.1| - 2.5e-06 28.0 0.0 3.9e-06 27.3 0.0 1.3 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|305664374|ref|YP_003860662.1| - 0.039 14.2 0.0 0.12 12.7 0.0 1.9 1 1 0 1 1 1 0 Retroviral aspartyl protease H_PPase PF03030.16 gi|305664375|ref|YP_003860663.1| - 3.7e-221 736.2 37.7 4.3e-221 736.0 37.7 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Ignisphaera_aggregans_DSM_17230_uid51875/NC_014471.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Ignisphaera_aggregans_DSM_17230_uid51875/NC_014471.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Ignisphaera_aggregans_DSM_17230_uid51875/NC_014471.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Ignisphaera_aggregans_DSM_17230_uid51875/NC_014471.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 11:05:07 2019 # [ok]