# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- ABC2_membrane_2 PF12679.7 gi|124026907|ref|YP_001012227.1| - 1.4e-06 27.9 35.0 4.2e-06 26.3 35.0 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|124026907|ref|YP_001012227.1| - 0.00011 22.3 18.4 0.00011 22.3 18.4 2.7 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|124026907|ref|YP_001012227.1| - 1.2 8.7 25.7 0.1 12.1 18.3 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein Elf1 PF05129.13 gi|124026908|ref|YP_001012228.1| - 3.9e-23 81.3 0.1 4.9e-23 81.0 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|124026908|ref|YP_001012228.1| - 0.00061 20.1 0.4 0.0012 19.2 0.4 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-CSL PF05207.13 gi|124026908|ref|YP_001012228.1| - 0.0062 16.2 1.2 0.0083 15.8 0.2 1.7 2 0 0 2 2 2 1 CSL zinc finger DUF4776 PF16003.5 gi|124026908|ref|YP_001012228.1| - 0.039 13.0 0.2 0.052 12.6 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) RbpA PF13397.6 gi|124026908|ref|YP_001012228.1| - 0.055 14.1 0.0 0.42 11.3 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase-binding protein zf-ISL3 PF14690.6 gi|124026908|ref|YP_001012228.1| - 0.06 14.0 1.0 0.28 11.9 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_7 PF02591.15 gi|124026908|ref|YP_001012228.1| - 0.077 13.2 0.7 2.9 8.2 0.1 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|124026908|ref|YP_001012228.1| - 0.18 11.8 2.0 0.44 10.6 2.0 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-LITAF-like PF10601.9 gi|124026908|ref|YP_001012228.1| - 0.36 11.1 2.1 2.5 8.4 2.4 1.8 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Ogr_Delta PF04606.12 gi|124026908|ref|YP_001012228.1| - 1 9.4 4.3 2.1 8.4 4.3 1.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger DNA_ligase_ZBD PF03119.16 gi|124026908|ref|YP_001012228.1| - 3.5 7.7 6.8 0.55 10.3 2.2 2.1 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PcrB PF01884.17 gi|124026909|ref|YP_001012229.1| - 8.5e-52 175.8 0.0 1.1e-51 175.5 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|124026909|ref|YP_001012229.1| - 3.5e-06 26.6 0.0 7.6e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.20 gi|124026909|ref|YP_001012229.1| - 0.0016 17.3 0.2 0.91 8.3 0.1 2.7 2 1 1 3 3 3 2 Tryptophan synthase alpha chain BtpA PF03437.15 gi|124026909|ref|YP_001012229.1| - 0.072 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 BtpA family Ribul_P_3_epim PF00834.19 gi|124026909|ref|YP_001012229.1| - 0.1 12.0 0.2 5.1 6.4 0.1 2.4 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family baeRF_family10 PF18854.1 gi|124026909|ref|YP_001012229.1| - 0.12 12.6 0.4 12 6.2 0.3 2.2 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 MazG PF03819.17 gi|124026910|ref|YP_001012230.1| - 1.3e-10 41.2 0.1 1.9e-10 40.8 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|124026910|ref|YP_001012230.1| - 3.2e-05 24.3 0.3 4e-05 24.0 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.7 gi|124026910|ref|YP_001012230.1| - 6.7e-05 23.1 0.0 8.7e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 MazG-like family Sec61_beta PF03911.16 gi|124026911|ref|YP_001012231.1| - 6.3e-11 42.1 1.3 7.9e-11 41.8 1.3 1.1 1 0 0 1 1 1 1 Sec61beta family DUF4672 PF15716.5 gi|124026911|ref|YP_001012231.1| - 0.055 13.1 1.5 0.13 11.8 0.2 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4672) DUF1743 PF08489.11 gi|124026912|ref|YP_001012232.1| - 8.7e-37 125.7 0.0 1.5e-36 125.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) AsnC_trans_reg PF01037.21 gi|124026913|ref|YP_001012233.1| - 1.5e-13 50.5 0.5 1.6e-13 50.4 0.5 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|124026913|ref|YP_001012233.1| - 9.8e-05 22.2 0.1 0.0001 22.2 0.1 1.2 1 0 0 1 1 1 1 GYD domain NapD PF03927.13 gi|124026913|ref|YP_001012233.1| - 0.01 15.8 0.8 0.065 13.3 0.8 2.1 1 1 0 1 1 1 0 NapD protein Ribo_biogen_C PF04034.13 gi|124026914|ref|YP_001012234.1| - 1.1e-40 138.3 0.0 1.4e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal Staygreen PF12638.7 gi|124026914|ref|YP_001012234.1| - 0.065 13.0 0.0 0.098 12.4 0.0 1.2 1 0 0 1 1 1 0 Staygreen protein LacI PF00356.21 gi|124026915|ref|YP_001012235.1| - 3.4e-06 26.8 0.3 1.4e-05 24.8 0.3 1.9 1 1 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_3 PF01381.22 gi|124026915|ref|YP_001012235.1| - 2.7e-05 24.1 0.0 5.5e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|124026915|ref|YP_001012235.1| - 0.0003 21.1 0.1 0.00056 20.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|124026915|ref|YP_001012235.1| - 0.0023 18.2 0.0 0.0035 17.6 0.0 1.3 1 0 0 1 1 1 1 Transposase GerE PF00196.19 gi|124026915|ref|YP_001012235.1| - 0.01 15.4 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_26 PF13443.6 gi|124026915|ref|YP_001012235.1| - 0.014 15.8 0.0 0.091 13.2 0.0 2.2 1 1 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Sigma70_r4_2 PF08281.12 gi|124026915|ref|YP_001012235.1| - 0.014 15.1 2.1 0.041 13.6 0.2 2.5 2 2 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|124026915|ref|YP_001012235.1| - 0.019 14.8 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|124026915|ref|YP_001012235.1| - 0.025 14.5 0.1 0.32 10.9 0.1 2.7 2 1 1 3 3 3 0 MarR family Sigma70_ECF PF07638.11 gi|124026915|ref|YP_001012235.1| - 0.029 14.3 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor HTH_Crp_2 PF13545.6 gi|124026915|ref|YP_001012235.1| - 0.057 13.4 0.4 0.61 10.1 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_7 PF02796.15 gi|124026915|ref|YP_001012235.1| - 0.072 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Ub-Mut7C PF14451.6 gi|124026915|ref|YP_001012235.1| - 0.08 12.8 0.0 0.16 11.8 0.0 1.5 2 0 0 2 2 2 0 Mut7-C ubiquitin HTH_17 PF12728.7 gi|124026915|ref|YP_001012235.1| - 0.1 12.8 0.0 0.54 10.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|124026915|ref|YP_001012235.1| - 0.15 11.9 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF3071 PF11268.8 gi|124026915|ref|YP_001012235.1| - 0.16 12.0 0.1 0.25 11.4 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3071) tRNA_NucTransf2 PF09249.11 gi|124026917|ref|YP_001012237.1| - 3.3e-43 146.5 0.0 8.3e-43 145.2 0.0 1.7 2 0 0 2 2 2 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|124026917|ref|YP_001012237.1| - 1.5e-10 41.3 0.0 2.6e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|124026917|ref|YP_001012237.1| - 0.055 13.6 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DNA_pol_B_palm PF14792.6 gi|124026917|ref|YP_001012237.1| - 0.066 13.4 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase beta palm DUF1188 PF06690.11 gi|124026917|ref|YP_001012237.1| - 0.25 10.8 0.0 0.47 9.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) HD PF01966.22 gi|124026918|ref|YP_001012238.1| - 4.2e-10 39.9 0.1 7.4e-10 39.1 0.1 1.4 1 0 0 1 1 1 1 HD domain TraI_2 PF07514.11 gi|124026918|ref|YP_001012238.1| - 1.3e-06 27.6 0.9 7.5e-06 25.1 0.9 2.1 1 1 0 1 1 1 1 Putative helicase HD_2 PF12917.7 gi|124026918|ref|YP_001012238.1| - 0.0032 17.2 0.0 0.0074 16.1 0.0 1.5 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme NAD_binding_8 PF13450.6 gi|124026919|ref|YP_001012239.1| - 5.3e-07 29.8 0.0 1.2e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|124026919|ref|YP_001012239.1| - 7e-07 28.8 0.0 1.3e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|124026919|ref|YP_001012239.1| - 3.1e-06 26.7 0.0 0.0012 18.1 0.0 3.0 2 1 1 3 3 3 1 FAD binding domain Lycopene_cycl PF05834.12 gi|124026919|ref|YP_001012239.1| - 1.3e-05 24.5 0.0 0.005 15.9 0.0 2.2 2 1 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|124026919|ref|YP_001012239.1| - 2e-05 24.4 0.1 0.016 14.8 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|124026919|ref|YP_001012239.1| - 0.0077 15.0 0.0 0.017 13.8 0.0 1.5 2 0 0 2 2 2 1 HI0933-like protein XdhC_C PF13478.6 gi|124026919|ref|YP_001012239.1| - 0.015 15.8 0.0 0.11 13.0 0.0 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain Thi4 PF01946.17 gi|124026919|ref|YP_001012239.1| - 0.097 11.9 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Thi4 family NAD_Gly3P_dh_N PF01210.23 gi|124026919|ref|YP_001012239.1| - 0.11 12.5 0.0 0.62 10.0 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|124026919|ref|YP_001012239.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|124026919|ref|YP_001012239.1| - 0.15 11.1 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|124026919|ref|YP_001012239.1| - 0.16 11.2 0.1 0.65 9.2 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|124026919|ref|YP_001012239.1| - 0.17 10.7 0.0 1 8.1 0.0 1.9 2 0 0 2 2 2 0 Tryptophan halogenase polyprenyl_synt PF00348.17 gi|124026920|ref|YP_001012240.1| - 8e-40 136.5 0.0 1.1e-39 136.1 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase PCNA_N PF00705.18 gi|124026921|ref|YP_001012241.1| - 2.6e-14 53.0 0.0 1.7e-13 50.4 0.0 2.1 1 1 1 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|124026921|ref|YP_001012241.1| - 2.2e-12 47.2 0.0 5.7e-09 36.2 0.0 2.3 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|124026921|ref|YP_001012241.1| - 5.5e-05 22.4 0.0 0.054 12.6 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|124026921|ref|YP_001012241.1| - 0.00052 19.5 0.0 0.001 18.6 0.0 1.6 2 0 0 2 2 2 1 Rad9 RimK PF08443.11 gi|124026922|ref|YP_001012242.1| - 1.9e-35 122.2 0.0 2.4e-35 121.8 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|124026922|ref|YP_001012242.1| - 6.7e-18 64.7 0.0 9.8e-18 64.2 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|124026922|ref|YP_001012242.1| - 5.8e-09 36.2 0.0 9.2e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|124026922|ref|YP_001012242.1| - 1.1e-06 28.1 0.0 0.097 11.9 0.0 3.1 2 1 1 3 3 3 3 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|124026922|ref|YP_001012242.1| - 1.5e-06 27.6 0.0 0.018 14.3 0.0 2.9 1 1 1 3 3 3 2 YheC/D like ATP-grasp CPSase_L_D2 PF02786.17 gi|124026922|ref|YP_001012242.1| - 0.00011 21.7 0.0 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Ins134_P3_kin PF05770.11 gi|124026922|ref|YP_001012242.1| - 0.00015 21.4 0.1 0.12 11.8 0.0 2.1 1 1 1 2 2 2 2 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain Rimk_N PF18030.1 gi|124026922|ref|YP_001012242.1| - 0.002 18.5 0.0 0.0039 17.5 0.0 1.5 1 0 0 1 1 1 1 RimK PreATP-grasp domain R2K_3 PF14243.6 gi|124026922|ref|YP_001012242.1| - 0.0055 16.7 0.3 0.0088 16.1 0.3 1.2 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 ATP-grasp_5 PF13549.6 gi|124026922|ref|YP_001012242.1| - 0.047 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp PF02222.22 gi|124026922|ref|YP_001012242.1| - 0.051 13.1 0.0 0.089 12.4 0.0 1.5 1 1 0 1 1 1 0 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|124026922|ref|YP_001012242.1| - 0.14 11.7 0.0 0.25 10.8 0.0 1.5 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus SIS PF01380.22 gi|124026924|ref|YP_001012244.1| - 0.0076 16.1 0.2 0.012 15.4 0.2 1.3 1 1 0 1 1 1 1 SIS domain PNP_UDP_1 PF01048.20 gi|124026925|ref|YP_001012245.1| - 4.4e-52 176.7 0.0 5e-52 176.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF1845 PF08900.11 gi|124026925|ref|YP_001012245.1| - 0.082 12.6 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1845) Methyltransf_11 PF08241.12 gi|124026926|ref|YP_001012246.1| - 5e-07 30.3 0.0 1.2e-06 29.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|124026926|ref|YP_001012246.1| - 9.2e-07 29.5 0.0 1.5e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|124026926|ref|YP_001012246.1| - 1.2e-05 24.8 0.0 0.0036 16.7 0.0 2.3 2 0 0 2 2 2 2 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|124026926|ref|YP_001012246.1| - 1.2e-05 24.9 0.0 1.7e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|124026926|ref|YP_001012246.1| - 6.4e-05 22.7 0.0 9.5e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_30 PF05430.11 gi|124026926|ref|YP_001012246.1| - 0.00011 22.0 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_31 PF13847.6 gi|124026926|ref|YP_001012246.1| - 0.0004 20.2 0.0 0.00069 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|124026926|ref|YP_001012246.1| - 0.0019 17.9 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|124026926|ref|YP_001012246.1| - 0.0027 17.5 0.0 0.031 14.1 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|124026926|ref|YP_001012246.1| - 0.0089 15.5 0.0 0.032 13.7 0.0 1.7 1 1 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 gi|124026926|ref|YP_001012246.1| - 0.021 14.1 0.0 0.039 13.3 0.0 1.4 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Met_10 PF02475.16 gi|124026926|ref|YP_001012246.1| - 0.034 13.9 0.0 0.067 12.9 0.0 1.5 1 1 0 1 1 1 0 Met-10+ like-protein PCMT PF01135.19 gi|124026926|ref|YP_001012246.1| - 0.086 12.6 0.0 0.15 11.8 0.0 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DRE2_N PF16803.5 gi|124026926|ref|YP_001012246.1| - 0.097 12.9 0.0 0.2 11.9 0.0 1.5 2 0 0 2 2 2 0 Fe-S cluster assembly protein DRE2 N-terminus SWIM PF04434.17 gi|124026927|ref|YP_001012247.1| - 5.1e-06 26.0 0.1 7.5e-06 25.5 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger Neisseria_PilC PF05567.11 gi|124026927|ref|YP_001012247.1| - 0.14 11.1 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 Neisseria PilC beta-propeller domain UbiA PF01040.18 gi|124026928|ref|YP_001012248.1| - 4.2e-33 114.7 27.1 4.2e-33 114.7 27.1 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family TYW3 PF02676.14 gi|124026929|ref|YP_001012249.1| - 1.5e-31 109.5 0.0 1.9e-31 109.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 Nop PF01798.18 gi|124026933|ref|YP_001012253.1| - 9.8e-71 237.9 0.0 1.3e-70 237.5 0.0 1.1 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin NepR PF18557.1 gi|124026933|ref|YP_001012253.1| - 0.05 13.2 0.1 0.22 11.2 0.0 2.2 2 0 0 2 2 2 0 Anti-sigma factor NepR HhH-GPD PF00730.25 gi|124026933|ref|YP_001012253.1| - 0.075 13.5 0.1 0.49 10.9 0.1 2.4 1 1 1 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein DUF3173 PF11372.8 gi|124026933|ref|YP_001012253.1| - 0.09 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3173) Radical_SAM PF04055.21 gi|124026933|ref|YP_001012253.1| - 0.25 11.7 1.1 1.9 8.8 0.0 2.5 2 1 0 2 2 2 0 Radical SAM superfamily RuvA_C PF07499.13 gi|124026933|ref|YP_001012253.1| - 0.87 10.1 3.9 0.92 10.0 0.1 3.0 4 0 0 4 4 4 0 RuvA, C-terminal domain Fibrillarin PF01269.17 gi|124026934|ref|YP_001012254.1| - 4e-106 353.2 0.0 4.7e-106 353.0 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|124026934|ref|YP_001012254.1| - 0.0039 17.0 0.0 0.0073 16.1 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|124026934|ref|YP_001012254.1| - 0.005 17.0 0.0 0.006 16.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltr_RsmB-F PF01189.17 gi|124026934|ref|YP_001012254.1| - 0.036 13.7 0.0 0.065 12.9 0.0 1.6 1 1 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DUF61 PF01886.16 gi|124026935|ref|YP_001012255.1| - 9.6e-16 58.0 0.0 1.3e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF61 HTH_3 PF01381.22 gi|124026936|ref|YP_001012256.1| - 4.8e-07 29.7 0.1 1e-06 28.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|124026936|ref|YP_001012256.1| - 0.00016 21.9 0.2 0.00057 20.2 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Mrr_cat PF04471.12 gi|124026936|ref|YP_001012256.1| - 0.00044 20.2 0.6 0.0027 17.7 0.0 2.2 2 0 0 2 2 2 1 Restriction endonuclease HTH_7 PF02796.15 gi|124026936|ref|YP_001012256.1| - 0.00047 20.2 0.1 0.37 10.9 0.0 2.9 2 1 1 3 3 3 2 Helix-turn-helix domain of resolvase HTH_19 PF12844.7 gi|124026936|ref|YP_001012256.1| - 0.0017 18.3 0.2 0.0039 17.2 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.6 gi|124026936|ref|YP_001012256.1| - 0.0079 16.3 0.0 4.1 7.6 0.0 3.4 3 0 0 3 3 3 1 MerR HTH family regulatory protein Terminase_5 PF06056.12 gi|124026936|ref|YP_001012256.1| - 0.03 14.2 0.0 8.9 6.3 0.0 2.6 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_25 PF13413.6 gi|124026936|ref|YP_001012256.1| - 0.031 14.1 1.6 0.071 13.0 0.2 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|124026936|ref|YP_001012256.1| - 0.048 13.5 0.1 0.56 10.1 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain TetR_N PF00440.23 gi|124026936|ref|YP_001012256.1| - 0.13 12.1 0.0 25 4.8 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family tRNA-synt_2 PF00152.20 gi|124026937|ref|YP_001012257.1| - 3.7e-88 295.6 0.0 4.4e-88 295.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|124026937|ref|YP_001012257.1| - 2.8e-14 52.9 0.2 4.9e-14 52.1 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|124026937|ref|YP_001012257.1| - 0.01 15.3 0.2 5.4 6.4 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) DUF4539 PF15072.6 gi|124026937|ref|YP_001012257.1| - 0.059 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4539) SsgA PF04686.12 gi|124026937|ref|YP_001012257.1| - 0.12 12.4 0.2 0.87 9.6 0.0 2.3 2 0 0 2 2 2 0 Streptomyces sporulation and cell division protein, SsgA MCM_N PF14551.6 gi|124026937|ref|YP_001012257.1| - 0.18 12.4 0.0 0.42 11.2 0.0 1.6 1 0 0 1 1 1 0 MCM N-terminal domain Radical_SAM PF04055.21 gi|124026938|ref|YP_001012258.1| - 4.8e-18 66.1 0.0 8.6e-18 65.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|124026938|ref|YP_001012258.1| - 1.7e-05 25.2 0.0 4.7e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|124026938|ref|YP_001012258.1| - 4.3e-05 23.8 0.0 7.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|124026938|ref|YP_001012258.1| - 0.0002 21.5 0.0 0.00038 20.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain 3H PF02829.14 gi|124026938|ref|YP_001012258.1| - 0.083 13.2 0.0 0.67 10.3 0.0 2.1 2 0 0 2 2 2 0 3H domain AsnC_trans_reg2 PF17805.1 gi|124026939|ref|YP_001012259.1| - 3.3e-26 91.2 0.1 1.3e-14 54.1 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain Cm_res_leader PF08077.11 gi|124026939|ref|YP_001012259.1| - 0.086 12.9 2.1 23 5.6 0.0 3.3 3 0 0 3 3 3 0 Chloramphenicol resistance gene leader peptide Radical_SAM PF04055.21 gi|124026940|ref|YP_001012260.1| - 9.1e-25 88.0 0.0 2e-24 86.9 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|124026940|ref|YP_001012260.1| - 2.5e-08 34.3 0.1 4.6e-08 33.5 0.1 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|124026940|ref|YP_001012260.1| - 3.2e-08 33.9 0.0 5.6e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|124026940|ref|YP_001012260.1| - 1.9e-07 31.2 0.0 3.5e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain EndIII_4Fe-2S PF10576.9 gi|124026940|ref|YP_001012260.1| - 0.51 10.7 4.1 0.26 11.7 1.5 1.9 2 0 0 2 2 2 0 Iron-sulfur binding domain of endonuclease III 5-FTHF_cyc-lig PF01812.20 gi|124026941|ref|YP_001012261.1| - 2.9e-30 105.5 0.0 3.6e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Not1 PF04054.15 gi|124026941|ref|YP_001012261.1| - 0.043 12.7 0.1 0.072 12.0 0.1 1.2 1 0 0 1 1 1 0 CCR4-Not complex component, Not1 Mrr_cat PF04471.12 gi|124026942|ref|YP_001012262.1| - 1.4e-06 28.3 0.2 2.3e-06 27.6 0.2 1.3 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.17 gi|124026942|ref|YP_001012262.1| - 2.3e-06 27.8 0.2 5.4e-06 26.6 0.2 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 CoA_binding_2 PF13380.6 gi|124026942|ref|YP_001012262.1| - 0.032 14.7 0.1 0.074 13.6 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain eIF-6 PF01912.18 gi|124026942|ref|YP_001012262.1| - 0.041 13.2 0.1 0.067 12.6 0.1 1.3 1 0 0 1 1 1 0 eIF-6 family DS PF01916.17 gi|124026943|ref|YP_001012263.1| - 9.6e-97 323.7 0.0 1.1e-96 323.5 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Condensin2nSMC PF12422.8 gi|124026943|ref|YP_001012263.1| - 0.14 12.3 0.0 1.8 8.7 0.0 2.1 1 1 1 2 2 2 0 Condensin II non structural maintenance of chromosomes subunit Methyltransf_25 PF13649.6 gi|124026944|ref|YP_001012264.1| - 2.2e-10 41.1 0.0 3.2e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|124026944|ref|YP_001012264.1| - 2.8e-08 33.7 0.0 3.6e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|124026944|ref|YP_001012264.1| - 4.7e-08 33.6 0.0 7.1e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|124026944|ref|YP_001012264.1| - 2.2e-06 27.5 0.1 3.2e-05 23.7 0.1 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|124026944|ref|YP_001012264.1| - 3.4e-05 23.6 0.0 6e-05 22.7 0.0 1.4 2 0 0 2 2 2 1 Conserved hypothetical protein 95 DOT1 PF08123.13 gi|124026944|ref|YP_001012264.1| - 5.9e-05 22.7 0.0 0.0034 17.0 0.0 2.0 1 1 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.13 gi|124026944|ref|YP_001012264.1| - 6.5e-05 22.5 0.0 8.1e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|124026944|ref|YP_001012264.1| - 7.8e-05 22.1 0.0 9.7e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|124026944|ref|YP_001012264.1| - 0.00022 21.2 0.0 0.00032 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|124026944|ref|YP_001012264.1| - 0.00035 20.0 0.0 0.00049 19.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|124026944|ref|YP_001012264.1| - 0.00059 19.5 0.0 0.00067 19.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.11 gi|124026944|ref|YP_001012264.1| - 0.0015 17.6 0.0 0.0021 17.1 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|124026944|ref|YP_001012264.1| - 0.0016 18.0 0.0 0.0021 17.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|124026944|ref|YP_001012264.1| - 0.0087 16.8 0.0 0.012 16.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|124026944|ref|YP_001012264.1| - 0.0095 15.4 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|124026944|ref|YP_001012264.1| - 0.0096 15.2 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_23 PF13489.6 gi|124026944|ref|YP_001012264.1| - 0.012 15.4 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|124026944|ref|YP_001012264.1| - 0.017 15.1 0.0 0.025 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|124026944|ref|YP_001012264.1| - 0.019 14.0 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.15 gi|124026944|ref|YP_001012264.1| - 0.17 11.7 0.1 0.24 11.2 0.1 1.4 1 1 0 1 1 1 0 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|124026945|ref|YP_001012265.1| - 1.4e-12 47.4 0.0 1.9e-12 47.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|124026945|ref|YP_001012265.1| - 8.9e-09 35.9 0.1 1.4e-08 35.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|124026945|ref|YP_001012265.1| - 1.1e-08 35.6 0.1 2e-08 34.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|124026945|ref|YP_001012265.1| - 0.026 14.4 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|124026945|ref|YP_001012265.1| - 0.046 13.5 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Flavoprotein PF02441.19 gi|124026946|ref|YP_001012266.1| - 1.4e-27 96.3 0.0 1.8e-27 96.0 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein E3_binding PF02817.17 gi|124026946|ref|YP_001012266.1| - 0.052 13.9 0.1 0.15 12.4 0.0 1.9 2 0 0 2 2 2 0 e3 binding domain DUF562 PF04763.12 gi|124026946|ref|YP_001012266.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF562) tRNA_int_endo PF01974.17 gi|124026948|ref|YP_001012268.1| - 1.3e-31 108.4 0.0 1.9e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|124026948|ref|YP_001012268.1| - 2.2e-20 72.1 0.2 3.3e-20 71.5 0.2 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|124026948|ref|YP_001012268.1| - 0.053 13.7 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 tRNA-splicing endonuclease subunit sen54 N-term PhoU_div PF01865.16 gi|124026949|ref|YP_001012269.1| - 2e-10 40.4 5.3 6.5e-10 38.7 5.3 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF47 LPP PF04728.13 gi|124026949|ref|YP_001012269.1| - 0.00017 21.9 1.2 1.7 9.1 0.0 3.9 3 2 0 3 3 3 2 Lipoprotein leucine-zipper PhoU PF01895.19 gi|124026949|ref|YP_001012269.1| - 0.0011 19.3 10.6 0.0075 16.7 4.4 2.7 2 2 0 2 2 2 1 PhoU domain Spc7 PF08317.11 gi|124026949|ref|YP_001012269.1| - 0.017 14.0 1.7 0.99 8.2 0.0 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein CRIC_ras_sig PF10534.9 gi|124026949|ref|YP_001012269.1| - 0.019 15.1 0.1 0.26 11.5 0.1 2.4 2 0 0 2 2 2 0 Connector enhancer of kinase suppressor of ras SesA PF17107.5 gi|124026949|ref|YP_001012269.1| - 0.02 15.1 3.3 0.43 10.8 0.2 2.6 3 0 0 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Baculo_PEP_C PF04513.12 gi|124026949|ref|YP_001012269.1| - 0.025 14.6 6.1 4.6 7.3 0.6 3.2 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Hemagglutinin PF00509.18 gi|124026949|ref|YP_001012269.1| - 0.05 12.0 1.9 0.22 9.9 0.2 2.0 2 0 0 2 2 2 0 Haemagglutinin DivIC PF04977.15 gi|124026949|ref|YP_001012269.1| - 0.061 13.1 2.3 5.2 6.9 0.0 2.9 2 1 1 3 3 3 0 Septum formation initiator Seryl_tRNA_N PF02403.22 gi|124026949|ref|YP_001012269.1| - 0.074 13.3 4.0 2.7 8.3 0.0 2.7 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Syntaxin-6_N PF09177.11 gi|124026949|ref|YP_001012269.1| - 0.079 13.5 6.4 0.081 13.5 0.6 2.9 2 2 1 3 3 3 0 Syntaxin 6, N-terminal DUF3289 PF11692.8 gi|124026949|ref|YP_001012269.1| - 0.08 12.5 0.2 0.21 11.1 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3289) TssO PF17561.2 gi|124026949|ref|YP_001012269.1| - 0.23 11.5 3.9 6 7.0 0.3 2.9 1 1 2 3 3 3 0 Type VI secretion system, TssO COG5 PF10392.9 gi|124026949|ref|YP_001012269.1| - 0.39 10.9 4.7 2.6 8.2 0.6 2.8 1 1 2 3 3 3 0 Golgi transport complex subunit 5 HSCB_C PF07743.13 gi|124026949|ref|YP_001012269.1| - 0.4 11.2 4.8 4.5 7.8 1.3 3.3 2 2 0 2 2 2 0 HSCB C-terminal oligomerisation domain Laminin_II PF06009.12 gi|124026949|ref|YP_001012269.1| - 0.46 10.5 4.6 40 4.2 0.2 3.1 1 1 1 3 3 3 0 Laminin Domain II DUF4164 PF13747.6 gi|124026949|ref|YP_001012269.1| - 0.5 10.7 8.7 0.054 13.8 1.2 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) Radical_SAM PF04055.21 gi|124026950|ref|YP_001012270.1| - 2.1e-20 73.8 0.0 1.6e-19 70.9 0.0 2.3 3 0 0 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|124026950|ref|YP_001012270.1| - 2.4e-08 34.0 0.2 5.6e-08 32.9 0.2 1.7 1 0 0 1 1 1 1 B12 binding domain Baculo_PEP_C PF04513.12 gi|124026951|ref|YP_001012271.1| - 0.0028 17.7 1.0 0.11 12.6 0.2 2.1 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus TetR_C_9 PF14514.6 gi|124026951|ref|YP_001012271.1| - 0.0034 17.5 0.1 0.0074 16.4 0.1 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain Latarcin PF10279.9 gi|124026951|ref|YP_001012271.1| - 0.0062 16.9 2.2 0.45 11.0 0.1 2.3 1 1 1 2 2 2 2 Latarcin precursor TTRAP PF14203.6 gi|124026951|ref|YP_001012271.1| - 0.031 14.3 0.3 4.8 7.2 0.0 2.4 2 0 0 2 2 2 0 Putative tranposon-transfer assisting protein HGTP_anticodon PF03129.20 gi|124026953|ref|YP_001012273.1| - 1.9e-22 79.2 0.9 3.2e-22 78.5 0.2 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|124026953|ref|YP_001012273.1| - 1.1e-08 35.3 0.0 3.9e-07 30.2 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Rad50_zn_hook PF04423.14 gi|124026953|ref|YP_001012273.1| - 0.014 15.3 4.1 0.029 14.2 0.1 2.9 2 1 1 3 3 3 0 Rad50 zinc hook motif Zn_ribbon_SprT PF17283.2 gi|124026953|ref|YP_001012273.1| - 0.11 12.4 0.1 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|124026953|ref|YP_001012273.1| - 0.25 11.5 2.5 5.2 7.3 2.4 2.4 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2HC_2 PF13913.6 gi|124026953|ref|YP_001012273.1| - 0.72 9.8 5.4 0.22 11.4 0.2 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2 PF00096.26 gi|124026953|ref|YP_001012273.1| - 3.9 8.1 5.8 35 5.1 0.1 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|124026953|ref|YP_001012273.1| - 4.8 8.3 4.9 2.1e+02 3.2 0.4 3.4 3 0 0 3 3 3 0 C2H2-type zinc finger Arginase PF00491.21 gi|124026954|ref|YP_001012274.1| - 5.7e-77 259.0 0.0 6.4e-77 258.8 0.0 1.0 1 0 0 1 1 1 1 Arginase family DNA_RNApol_7kD PF03604.13 gi|124026955|ref|YP_001012275.1| - 1e-08 34.7 4.6 2.1e-08 33.7 4.6 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|124026955|ref|YP_001012275.1| - 0.00013 21.9 0.4 0.00019 21.4 0.4 1.3 1 0 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|124026955|ref|YP_001012275.1| - 0.00041 20.3 0.6 0.027 14.4 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|124026955|ref|YP_001012275.1| - 0.00052 19.9 0.1 0.00068 19.5 0.1 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-C2H2 PF00096.26 gi|124026955|ref|YP_001012275.1| - 0.0021 18.4 1.4 0.75 10.4 0.0 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type Nudix_N_2 PF14803.6 gi|124026955|ref|YP_001012275.1| - 0.0046 16.9 0.3 2.5 8.1 0.1 2.1 2 0 0 2 2 2 2 Nudix N-terminal HypA PF01155.19 gi|124026955|ref|YP_001012275.1| - 0.009 16.0 0.0 0.0093 16.0 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_4 PF13894.6 gi|124026955|ref|YP_001012275.1| - 0.03 15.2 1.2 11 7.2 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.7 gi|124026955|ref|YP_001012275.1| - 0.038 14.0 0.2 0.052 13.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon CpXC PF14353.6 gi|124026955|ref|YP_001012275.1| - 0.038 14.0 0.8 5.4 7.1 0.1 2.1 1 1 1 2 2 2 0 CpXC protein TFIIS_C PF01096.18 gi|124026955|ref|YP_001012275.1| - 0.04 13.8 1.1 5.6 6.9 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf_UBZ PF18439.1 gi|124026955|ref|YP_001012275.1| - 0.04 13.5 0.7 0.56 9.8 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|124026955|ref|YP_001012275.1| - 0.087 12.3 5.0 0.088 12.2 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain PyrI_C PF02748.15 gi|124026955|ref|YP_001012275.1| - 0.092 12.7 1.7 7.7 6.5 0.0 2.1 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Lar_restr_allev PF14354.6 gi|124026955|ref|YP_001012275.1| - 0.1 13.0 1.5 4.5 7.7 0.2 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_10 PF10058.9 gi|124026955|ref|YP_001012275.1| - 0.13 12.0 2.2 1.6 8.5 0.1 2.1 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein UPF0547 PF10571.9 gi|124026955|ref|YP_001012275.1| - 0.14 12.3 5.2 0.27 11.3 0.6 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_7 PF02591.15 gi|124026955|ref|YP_001012275.1| - 0.15 12.3 3.4 6.3 7.1 0.1 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain Mu-like_Com PF10122.9 gi|124026955|ref|YP_001012275.1| - 0.15 11.6 5.5 11 5.6 5.9 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C2H2_3 PF13878.6 gi|124026955|ref|YP_001012275.1| - 0.19 11.6 2.1 0.61 10.0 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_2 PF13240.6 gi|124026955|ref|YP_001012275.1| - 0.21 11.3 5.4 0.6 9.9 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|124026955|ref|YP_001012275.1| - 0.22 12.0 1.6 2.1 8.9 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-AN1 PF01428.16 gi|124026955|ref|YP_001012275.1| - 0.24 11.6 2.8 5.7 7.2 0.2 2.1 1 1 1 2 2 2 0 AN1-like Zinc finger zf-Mss51 PF13824.6 gi|124026955|ref|YP_001012275.1| - 0.32 11.1 2.9 9.3 6.4 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 SUI1 PF01253.22 gi|124026956|ref|YP_001012276.1| - 4.9e-22 78.2 0.2 5.9e-22 78.0 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|124026956|ref|YP_001012276.1| - 0.0013 19.0 0.2 0.0019 18.5 0.2 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) UBA PF00627.31 gi|124026956|ref|YP_001012276.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 UBA/TS-N domain TFIIB PF00382.19 gi|124026957|ref|YP_001012277.1| - 1.1e-34 118.3 5.7 9.3e-17 60.8 1.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|124026957|ref|YP_001012277.1| - 1.4e-10 40.5 0.5 2.5e-10 39.7 0.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|124026957|ref|YP_001012277.1| - 4e-05 23.1 0.2 0.00014 21.3 0.2 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|124026957|ref|YP_001012277.1| - 0.0003 20.1 0.2 0.014 14.8 0.1 2.9 2 1 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.19 gi|124026957|ref|YP_001012277.1| - 0.00036 20.0 0.1 0.0092 15.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_AsnC-type PF13404.6 gi|124026957|ref|YP_001012277.1| - 0.00039 20.2 0.2 0.00039 20.2 0.2 2.5 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Cyclin_C PF02984.19 gi|124026957|ref|YP_001012277.1| - 0.0017 18.5 0.0 0.81 9.8 0.0 2.4 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4_2 PF08281.12 gi|124026957|ref|YP_001012277.1| - 0.0053 16.4 0.3 0.02 14.6 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Cyclin_N PF00134.23 gi|124026957|ref|YP_001012277.1| - 0.013 15.2 0.3 0.031 14.0 0.1 1.6 2 0 0 2 2 2 0 Cyclin, N-terminal domain RB_B PF01857.20 gi|124026957|ref|YP_001012277.1| - 0.019 15.0 0.0 0.056 13.5 0.0 1.8 1 1 0 1 1 1 0 Retinoblastoma-associated protein B domain DUF3562 PF12085.8 gi|124026957|ref|YP_001012277.1| - 0.036 13.7 0.1 12 5.6 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) HTH_23 PF13384.6 gi|124026957|ref|YP_001012277.1| - 0.22 11.4 0.1 0.22 11.4 0.1 2.7 2 0 0 2 2 2 0 Homeodomain-like domain tRNA-synt_1f PF01921.18 gi|124026958|ref|YP_001012278.1| - 3.6e-94 315.7 0.0 4.7e-94 315.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) PEGSRP PF07623.11 gi|124026958|ref|YP_001012278.1| - 0.097 12.5 0.0 0.33 10.8 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1584) TrmB PF01978.19 gi|124026959|ref|YP_001012279.1| - 9.7e-06 25.4 0.1 1.9e-05 24.5 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|124026959|ref|YP_001012279.1| - 0.00019 21.2 0.7 0.00037 20.3 0.7 1.5 1 0 0 1 1 1 1 MarR family RP-C PF03428.13 gi|124026959|ref|YP_001012279.1| - 0.0046 16.6 0.3 1 9.0 0.1 2.2 2 0 0 2 2 2 2 Replication protein C N-terminal domain KorB PF08535.10 gi|124026959|ref|YP_001012279.1| - 0.011 15.8 0.0 0.69 10.0 0.0 2.3 2 0 0 2 2 2 0 KorB domain GntR PF00392.21 gi|124026959|ref|YP_001012279.1| - 0.011 15.4 0.1 0.022 14.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HrcA_DNA-bdg PF03444.15 gi|124026959|ref|YP_001012279.1| - 0.011 15.4 0.0 0.02 14.6 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TFIIE_alpha PF02002.17 gi|124026959|ref|YP_001012279.1| - 0.015 15.2 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_38 PF13936.6 gi|124026959|ref|YP_001012279.1| - 0.021 14.6 0.9 0.033 14.0 0.2 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 gi|124026959|ref|YP_001012279.1| - 0.022 14.7 0.0 0.052 13.5 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF480 PF04337.12 gi|124026959|ref|YP_001012279.1| - 0.026 14.6 0.1 0.082 13.0 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF480 ScsC_N PF18312.1 gi|124026959|ref|YP_001012279.1| - 0.049 13.4 0.1 11 5.9 0.0 2.3 2 0 0 2 2 2 0 Copper resistance protein ScsC N-terminal domain Rrf2 PF02082.20 gi|124026959|ref|YP_001012279.1| - 0.058 13.7 0.0 0.15 12.5 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|124026959|ref|YP_001012279.1| - 0.081 12.8 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|124026959|ref|YP_001012279.1| - 0.1 12.6 0.0 0.26 11.3 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GerE PF00196.19 gi|124026959|ref|YP_001012279.1| - 0.12 11.9 0.0 0.31 10.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Spermine_synth PF01564.17 gi|124026960|ref|YP_001012280.1| - 5.4e-50 169.4 0.0 7e-50 169.1 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|124026960|ref|YP_001012280.1| - 8.7e-13 47.9 0.0 2e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|124026960|ref|YP_001012280.1| - 0.00017 22.2 0.0 0.00032 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|124026960|ref|YP_001012280.1| - 0.0005 20.8 0.0 0.0013 19.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|124026960|ref|YP_001012280.1| - 0.0044 16.7 0.0 0.0062 16.2 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|124026960|ref|YP_001012280.1| - 0.0068 16.0 0.0 0.0099 15.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_30 PF05430.11 gi|124026960|ref|YP_001012280.1| - 0.0082 16.0 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_2 PF00891.18 gi|124026960|ref|YP_001012280.1| - 0.033 13.5 0.0 0.052 12.8 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain CxxCxxCC PF03692.15 gi|124026961|ref|YP_001012281.1| - 7.6e-12 45.7 0.0 1.2e-11 45.2 0.0 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF357 PF04010.13 gi|124026962|ref|YP_001012282.1| - 1.5e-16 60.2 1.8 2.2e-16 59.7 1.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|124026962|ref|YP_001012282.1| - 3.6e-13 49.9 0.0 6.3e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|124026962|ref|YP_001012282.1| - 0.13 12.1 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase DUF1028 PF06267.12 gi|124026963|ref|YP_001012283.1| - 1.3e-60 204.5 0.0 1.4e-60 204.4 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) DUF5622 PF18533.1 gi|124026964|ref|YP_001012284.1| - 9.5e-32 109.0 3.5 1e-31 108.8 3.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) DUF1254 PF06863.12 gi|124026964|ref|YP_001012284.1| - 0.037 14.1 0.1 0.04 14.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1254) Isochorismatase PF00857.20 gi|124026965|ref|YP_001012285.1| - 1.2e-41 142.8 0.0 1.5e-41 142.5 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family Helicase_C_2 PF13307.6 gi|124026966|ref|YP_001012286.1| - 2e-26 93.2 0.0 3.7e-26 92.3 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|124026966|ref|YP_001012286.1| - 2.2e-13 50.2 0.0 3.5e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|124026966|ref|YP_001012286.1| - 1.6e-06 28.0 0.0 0.027 14.2 0.0 3.4 3 1 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|124026966|ref|YP_001012286.1| - 0.00085 19.4 0.0 0.0063 16.5 0.0 2.3 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit HBB PF06777.11 gi|124026966|ref|YP_001012286.1| - 0.016 14.9 0.0 0.04 13.6 0.0 1.7 1 0 0 1 1 1 0 Helical and beta-bridge domain AAA_22 PF13401.6 gi|124026966|ref|YP_001012286.1| - 0.054 13.8 0.2 29 4.9 0.0 3.4 3 0 0 3 3 3 0 AAA domain DUF4704 PF15787.5 gi|124026966|ref|YP_001012286.1| - 0.16 11.1 0.1 0.26 10.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4704) ABC_tran PF00005.27 gi|124026967|ref|YP_001012287.1| - 1.7e-37 129.0 0.0 2.8e-37 128.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124026967|ref|YP_001012287.1| - 2.4e-08 34.2 0.0 0.0016 18.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|124026967|ref|YP_001012287.1| - 0.00045 20.2 0.0 0.00069 19.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 gi|124026967|ref|YP_001012287.1| - 0.0017 17.8 0.0 0.23 10.9 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|124026967|ref|YP_001012287.1| - 0.0022 17.4 0.4 0.13 11.7 0.2 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_23 PF13476.6 gi|124026967|ref|YP_001012287.1| - 0.003 18.1 0.7 0.0044 17.5 0.1 1.5 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|124026967|ref|YP_001012287.1| - 0.0052 17.2 0.5 0.012 16.0 0.5 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|124026967|ref|YP_001012287.1| - 0.0088 16.5 0.0 0.028 14.8 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|124026967|ref|YP_001012287.1| - 0.011 15.7 0.0 0.066 13.2 0.0 2.3 4 0 0 4 4 4 0 AAA domain AAA_29 PF13555.6 gi|124026967|ref|YP_001012287.1| - 0.017 14.9 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|124026967|ref|YP_001012287.1| - 0.017 15.4 0.4 0.084 13.1 0.4 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|124026967|ref|YP_001012287.1| - 0.021 14.8 0.3 0.085 12.8 0.1 2.0 1 1 1 2 2 2 0 NACHT domain RsgA_GTPase PF03193.16 gi|124026967|ref|YP_001012287.1| - 0.039 13.8 0.0 0.086 12.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 gi|124026967|ref|YP_001012287.1| - 0.04 13.8 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_ATPase PF09818.9 gi|124026967|ref|YP_001012287.1| - 0.042 12.7 0.1 1.4 7.6 0.2 2.7 3 0 0 3 3 3 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 gi|124026967|ref|YP_001012287.1| - 0.044 13.3 0.0 0.16 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|124026967|ref|YP_001012287.1| - 0.081 13.2 0.0 0.2 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|124026968|ref|YP_001012288.1| - 1.6e-18 67.1 44.3 2.9e-13 50.0 13.7 3.6 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|124026969|ref|YP_001012289.1| - 1.5e-15 57.8 0.2 2.9e-15 56.8 0.2 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|124026969|ref|YP_001012289.1| - 5e-13 49.0 0.1 8.9e-13 48.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|124026969|ref|YP_001012289.1| - 1.4e-11 44.9 1.7 3.3e-11 43.7 1.7 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|124026969|ref|YP_001012289.1| - 1.5e-06 28.1 0.0 4.3e-06 26.6 0.0 1.7 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SurA_N_2 PF13623.6 gi|124026969|ref|YP_001012289.1| - 0.042 13.7 0.8 0.12 12.3 0.8 1.8 1 0 0 1 1 1 0 SurA N-terminal domain ATP19 PF11022.8 gi|124026969|ref|YP_001012289.1| - 0.093 13.1 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 ATP synthase subunit K DUF4800 PF16057.5 gi|124026969|ref|YP_001012289.1| - 0.13 11.5 2.0 0.19 10.9 2.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4800) PepSY_TM PF03929.16 gi|124026969|ref|YP_001012289.1| - 0.61 9.7 1.7 7.1 6.2 0.2 2.2 2 0 0 2 2 2 0 PepSY-associated TM region DUF2076 PF09849.9 gi|124026969|ref|YP_001012289.1| - 0.89 9.6 6.0 1.5 8.9 6.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) DUF3391 PF11871.8 gi|124026969|ref|YP_001012289.1| - 1.2 9.6 4.4 1 9.9 2.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3391) DUF677 PF05055.12 gi|124026970|ref|YP_001012290.1| - 0.0012 17.8 3.3 0.0021 17.0 3.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF677) DUF1664 PF07889.12 gi|124026970|ref|YP_001012290.1| - 0.0037 17.3 3.0 0.0062 16.6 3.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|124026970|ref|YP_001012290.1| - 0.0041 17.2 1.3 0.0068 16.5 1.3 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus MscS_porin PF12795.7 gi|124026970|ref|YP_001012290.1| - 0.0049 16.4 0.5 0.0071 15.9 0.5 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain HIP1_clath_bdg PF16515.5 gi|124026970|ref|YP_001012290.1| - 0.0052 17.4 1.3 0.0093 16.6 1.3 1.3 1 0 0 1 1 1 1 Clathrin-binding domain of Huntingtin-interacting protein 1 Spc7 PF08317.11 gi|124026970|ref|YP_001012290.1| - 0.0076 15.2 1.5 0.0076 15.2 1.5 1.4 2 0 0 2 2 2 1 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|124026970|ref|YP_001012290.1| - 0.018 15.4 1.4 3.1 8.3 0.0 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) TPD52 PF04201.15 gi|124026970|ref|YP_001012290.1| - 0.022 14.4 2.5 0.035 13.7 2.5 1.2 1 0 0 1 1 1 0 Tumour protein D52 family Fzo_mitofusin PF04799.13 gi|124026970|ref|YP_001012290.1| - 0.036 13.6 0.3 0.068 12.7 0.3 1.4 1 0 0 1 1 1 0 fzo-like conserved region Nsp1_C PF05064.13 gi|124026970|ref|YP_001012290.1| - 0.042 13.6 0.5 0.072 12.9 0.5 1.3 1 0 0 1 1 1 0 Nsp1-like C-terminal region AIP3 PF03915.13 gi|124026970|ref|YP_001012290.1| - 0.046 12.8 0.0 0.062 12.4 0.0 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 Prefoldin PF02996.17 gi|124026970|ref|YP_001012290.1| - 0.056 13.4 3.0 2.6 8.0 0.9 2.3 1 1 1 2 2 2 0 Prefoldin subunit DASH_Duo1 PF08651.10 gi|124026970|ref|YP_001012290.1| - 0.069 12.9 1.3 1.9 8.3 0.3 2.3 1 1 1 2 2 2 0 DASH complex subunit Duo1 Snapin_Pallidin PF14712.6 gi|124026970|ref|YP_001012290.1| - 0.072 13.5 0.9 0.11 12.9 0.9 1.2 1 0 0 1 1 1 0 Snapin/Pallidin Serine_rich PF08824.10 gi|124026970|ref|YP_001012290.1| - 0.092 12.7 0.8 0.16 12.0 0.8 1.3 1 0 0 1 1 1 0 Serine rich protein interaction domain Laminin_II PF06009.12 gi|124026970|ref|YP_001012290.1| - 0.11 12.5 3.7 0.18 11.8 3.7 1.3 1 0 0 1 1 1 0 Laminin Domain II PGF-CTERM PF18204.1 gi|124026970|ref|YP_001012290.1| - 0.12 12.4 5.6 0.23 11.5 5.6 1.5 1 0 0 1 1 1 0 PGF-CTERM motif DUF4618 PF15397.6 gi|124026970|ref|YP_001012290.1| - 0.14 11.6 0.5 0.2 11.0 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) ISG65-75 PF11727.8 gi|124026970|ref|YP_001012290.1| - 0.14 11.3 3.5 0.23 10.7 3.5 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein Tropomyosin_1 PF12718.7 gi|124026970|ref|YP_001012290.1| - 0.19 11.9 1.9 0.34 11.1 1.2 1.7 1 1 0 1 1 1 0 Tropomyosin like SKA1 PF07160.12 gi|124026970|ref|YP_001012290.1| - 0.2 11.5 0.7 0.32 10.8 0.7 1.2 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 DUF745 PF05335.13 gi|124026970|ref|YP_001012290.1| - 0.23 11.2 5.7 0.47 10.1 5.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF745) LPP PF04728.13 gi|124026970|ref|YP_001012290.1| - 0.23 11.9 6.4 1.5 9.3 1.5 2.5 1 1 1 2 2 2 0 Lipoprotein leucine-zipper Coagulase PF08764.10 gi|124026970|ref|YP_001012290.1| - 0.24 11.6 1.5 0.36 11.0 1.5 1.2 1 0 0 1 1 1 0 Staphylococcus aureus coagulase Rsd_AlgQ PF04353.13 gi|124026970|ref|YP_001012290.1| - 0.28 11.1 0.9 25 4.8 0.0 2.2 2 0 0 2 2 2 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DUF1515 PF07439.11 gi|124026970|ref|YP_001012290.1| - 0.32 11.0 1.9 0.6 10.1 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) DUF948 PF06103.11 gi|124026970|ref|YP_001012290.1| - 0.38 11.0 5.3 1.2 9.5 5.3 1.8 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) End3 PF12761.7 gi|124026970|ref|YP_001012290.1| - 0.44 10.7 2.4 2.9 8.0 2.5 1.8 1 1 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Alanine_zipper PF11839.8 gi|124026970|ref|YP_001012290.1| - 0.77 10.2 15.7 0.067 13.6 2.7 3.1 2 1 1 3 3 2 0 Alanine-zipper, major outer membrane lipoprotein Fusion_gly PF00523.18 gi|124026970|ref|YP_001012290.1| - 0.94 7.7 7.5 0.086 11.1 1.7 1.9 1 1 1 2 2 2 0 Fusion glycoprotein F0 COG2 PF06148.11 gi|124026970|ref|YP_001012290.1| - 1 9.5 3.4 7 6.7 1.7 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 ApoO PF09769.9 gi|124026970|ref|YP_001012290.1| - 1.4 8.9 5.1 0.33 10.9 0.7 2.1 2 1 0 2 2 1 0 Apolipoprotein O NPV_P10 PF05531.12 gi|124026970|ref|YP_001012290.1| - 3.1 8.3 5.5 7.8 7.0 5.4 1.6 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Metallophos PF00149.28 gi|124026971|ref|YP_001012291.1| - 1.7e-13 51.5 0.5 3.1e-13 50.7 0.5 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|124026971|ref|YP_001012291.1| - 1.3e-05 25.4 0.1 4e-05 23.9 0.0 1.9 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain DUF4366 PF14283.6 gi|124026971|ref|YP_001012291.1| - 0.012 15.7 3.2 0.012 15.7 3.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4366) DUF4625 PF15418.6 gi|124026971|ref|YP_001012291.1| - 0.012 15.9 0.0 8.3 6.7 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4625) Big_6 PF17936.1 gi|124026971|ref|YP_001012291.1| - 0.022 15.0 0.1 0.38 11.0 0.1 2.6 2 0 0 2 2 2 0 Bacterial Ig domain POT1 PF02765.17 gi|124026971|ref|YP_001012291.1| - 0.037 13.9 0.1 0.12 12.2 0.1 1.8 1 1 1 2 2 2 0 Telomeric single stranded DNA binding POT1/CDC13 Pex14_N PF04695.13 gi|124026971|ref|YP_001012291.1| - 0.31 11.7 10.9 0.64 10.7 10.9 1.5 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region RIO1 PF01163.22 gi|124026974|ref|YP_001012294.1| - 1.6e-47 161.6 0.0 2.1e-47 161.2 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|124026974|ref|YP_001012294.1| - 5.2e-23 81.1 0.8 1.3e-22 79.8 0.5 1.9 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.23 gi|124026974|ref|YP_001012294.1| - 1.1e-08 35.3 0.7 0.00068 19.6 0.0 3.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|124026974|ref|YP_001012294.1| - 0.00024 20.0 0.0 0.00034 19.5 0.0 1.1 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 gi|124026974|ref|YP_001012294.1| - 0.00034 20.0 0.0 0.0015 17.9 0.0 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family MarR_2 PF12802.7 gi|124026974|ref|YP_001012294.1| - 0.00042 20.1 0.4 0.032 14.1 0.1 3.4 4 0 0 4 4 4 1 MarR family Rrf2 PF02082.20 gi|124026974|ref|YP_001012294.1| - 0.0015 18.8 0.0 0.031 14.6 0.0 2.5 3 0 0 3 3 3 1 Transcriptional regulator Pkinase PF00069.25 gi|124026974|ref|YP_001012294.1| - 0.018 14.4 0.1 0.11 11.8 0.1 1.9 1 1 0 1 1 1 0 Protein kinase domain HTH_IclR PF09339.10 gi|124026974|ref|YP_001012294.1| - 0.09 12.6 0.5 0.52 10.2 0.0 2.5 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|124026975|ref|YP_001012295.1| - 2.3e-09 37.1 0.2 3.8e-09 36.5 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|124026975|ref|YP_001012295.1| - 7e-09 35.4 0.1 1.1e-08 34.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|124026975|ref|YP_001012295.1| - 9.5e-09 35.0 0.2 1.4e-08 34.5 0.2 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|124026975|ref|YP_001012295.1| - 1.1e-05 25.3 0.0 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|124026975|ref|YP_001012295.1| - 3.2e-05 23.4 2.1 3.2e-05 23.4 2.1 1.8 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|124026975|ref|YP_001012295.1| - 0.0024 17.7 0.3 0.0061 16.4 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|124026975|ref|YP_001012295.1| - 0.0028 17.8 0.0 0.0066 16.6 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|124026975|ref|YP_001012295.1| - 0.0085 15.9 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|124026975|ref|YP_001012295.1| - 0.011 16.3 0.1 0.017 15.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|124026975|ref|YP_001012295.1| - 0.014 15.1 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|124026975|ref|YP_001012295.1| - 0.034 14.1 0.3 0.071 13.1 0.3 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|124026975|ref|YP_001012295.1| - 0.11 12.6 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF3810 PF12725.7 gi|124026978|ref|YP_001012298.1| - 0.13 11.6 0.2 0.18 11.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) DUF2268 PF10026.9 gi|124026978|ref|YP_001012298.1| - 0.19 11.3 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) CBM65_1 PF18259.1 gi|124026978|ref|YP_001012298.1| - 0.19 11.9 0.0 0.25 11.5 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate binding module 65 domain 1 Peptidase_M10 PF00413.24 gi|124026978|ref|YP_001012298.1| - 0.22 11.4 0.0 0.28 11.0 0.0 1.2 1 0 0 1 1 1 0 Matrixin PhoU PF01895.19 gi|124026979|ref|YP_001012299.1| - 9.7e-16 58.0 5.0 5.8e-15 55.5 0.6 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|124026979|ref|YP_001012299.1| - 3.5e-10 39.6 0.1 8.1e-10 38.4 0.1 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin RNA_Me_trans PF04252.13 gi|124026980|ref|YP_001012300.1| - 7.6e-09 35.4 0.0 1.2e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Pribosyltran PF00156.27 gi|124026981|ref|YP_001012301.1| - 2.1e-16 59.8 0.0 3.1e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|124026981|ref|YP_001012301.1| - 0.0042 16.6 0.0 0.0056 16.1 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HemN_C PF06969.16 gi|124026981|ref|YP_001012301.1| - 0.067 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain SLH PF00395.20 gi|124026981|ref|YP_001012301.1| - 0.095 12.7 0.3 0.86 9.7 0.0 2.6 3 0 0 3 3 3 0 S-layer homology domain Cupin_2 PF07883.11 gi|124026982|ref|YP_001012302.1| - 1.6e-15 56.5 0.7 2.6e-15 55.9 0.7 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|124026982|ref|YP_001012302.1| - 1.5e-11 44.3 0.3 2.1e-11 43.9 0.3 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.7 gi|124026982|ref|YP_001012302.1| - 5.2e-07 29.5 0.0 7.3e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain MannoseP_isomer PF01050.18 gi|124026982|ref|YP_001012302.1| - 0.00012 22.0 0.0 0.00015 21.7 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Asp_Arg_Hydrox PF05118.15 gi|124026982|ref|YP_001012302.1| - 0.0011 18.8 0.0 0.0023 17.8 0.0 1.5 1 1 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase Cupin_3 PF05899.12 gi|124026982|ref|YP_001012302.1| - 0.0013 18.4 0.0 0.0025 17.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|124026982|ref|YP_001012302.1| - 0.0019 17.9 0.5 0.0026 17.4 0.5 1.2 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase PCO_ADO PF07847.12 gi|124026982|ref|YP_001012302.1| - 0.015 14.8 0.0 0.02 14.3 0.0 1.1 1 0 0 1 1 1 0 PCO_ADO Cupin_1 PF00190.22 gi|124026982|ref|YP_001012302.1| - 0.052 13.2 0.0 0.07 12.7 0.0 1.2 1 0 0 1 1 1 0 Cupin Auxin_BP PF02041.16 gi|124026982|ref|YP_001012302.1| - 0.052 13.2 0.0 0.082 12.6 0.0 1.4 1 1 0 1 1 1 0 Auxin binding protein DUF4437 PF14499.6 gi|124026982|ref|YP_001012302.1| - 0.1 11.7 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4437) CENP-C_C PF11699.8 gi|124026982|ref|YP_001012302.1| - 0.12 12.6 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Pirin_C PF05726.13 gi|124026982|ref|YP_001012302.1| - 0.17 12.3 0.0 0.35 11.2 0.0 1.5 2 0 0 2 2 2 0 Pirin C-terminal cupin domain DUF460 PF04312.13 gi|124026983|ref|YP_001012303.1| - 5e-46 155.9 0.1 2.4e-45 153.7 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF460) HOOK PF05622.12 gi|124026983|ref|YP_001012303.1| - 0.00051 18.3 5.5 0.0008 17.7 5.5 1.2 1 0 0 1 1 1 1 HOOK protein FlaC_arch PF05377.11 gi|124026983|ref|YP_001012303.1| - 0.0052 17.2 5.0 0.25 11.8 0.4 2.9 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) Golgin_A5 PF09787.9 gi|124026983|ref|YP_001012303.1| - 0.0062 16.1 9.0 0.012 15.1 9.0 1.4 1 0 0 1 1 1 1 Golgin subfamily A member 5 IF2_N PF04760.15 gi|124026983|ref|YP_001012303.1| - 0.0066 16.2 0.0 0.055 13.3 0.0 2.6 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region LURAP PF14854.6 gi|124026983|ref|YP_001012303.1| - 0.028 14.4 2.4 0.094 12.7 2.4 1.9 1 1 0 1 1 1 0 Leucine rich adaptor protein IFT20 PF14931.6 gi|124026983|ref|YP_001012303.1| - 0.076 13.2 15.2 0.24 11.6 4.7 2.8 1 1 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 S_100 PF01023.19 gi|124026983|ref|YP_001012303.1| - 0.087 12.5 0.5 0.21 11.3 0.5 1.6 1 0 0 1 1 1 0 S-100/ICaBP type calcium binding domain Fmp27_WPPW PF10359.9 gi|124026983|ref|YP_001012303.1| - 0.18 10.6 2.0 0.28 10.0 2.0 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain BRE1 PF08647.11 gi|124026983|ref|YP_001012303.1| - 0.23 11.6 9.0 0.086 12.9 5.4 2.2 2 0 0 2 2 1 0 BRE1 E3 ubiquitin ligase Spc7 PF08317.11 gi|124026983|ref|YP_001012303.1| - 0.23 10.3 13.6 0.012 14.5 8.2 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|124026983|ref|YP_001012303.1| - 0.32 11.0 1.9 16 5.5 0.6 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF2730 PF10805.8 gi|124026983|ref|YP_001012303.1| - 0.56 10.3 4.4 8.7 6.5 0.3 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) UPF0242 PF06785.11 gi|124026983|ref|YP_001012303.1| - 0.9 9.6 8.3 2.3 8.3 8.3 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus HAUS-augmin3 PF14932.6 gi|124026983|ref|YP_001012303.1| - 1.1 8.8 9.0 3.5 7.1 9.0 1.7 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF4763 PF15960.5 gi|124026983|ref|YP_001012303.1| - 1.2 8.4 8.8 1.2 8.4 5.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) ATG16 PF08614.11 gi|124026983|ref|YP_001012303.1| - 1.2 9.3 17.4 1.6 8.9 8.2 2.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Spc24 PF08286.11 gi|124026983|ref|YP_001012303.1| - 1.9 8.8 11.7 5.4 7.3 0.9 2.9 2 1 1 3 3 2 0 Spc24 subunit of Ndc80 Wtap PF17098.5 gi|124026983|ref|YP_001012303.1| - 2.2 8.2 10.6 3.4 7.6 3.8 2.7 2 0 0 2 2 2 0 WTAP/Mum2p family Syntaxin-6_N PF09177.11 gi|124026983|ref|YP_001012303.1| - 2.9 8.5 5.5 6.2 7.4 4.2 2.3 1 1 0 1 1 1 0 Syntaxin 6, N-terminal FTA4 PF13093.6 gi|124026983|ref|YP_001012303.1| - 5.6 6.8 10.2 1.6 8.6 7.1 1.7 2 0 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 JIP_LZII PF16471.5 gi|124026983|ref|YP_001012303.1| - 7.3 6.8 13.8 6.2 7.1 1.5 2.9 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II AdoMet_Synthase PF01941.19 gi|124026984|ref|YP_001012304.1| - 3.1e-175 582.7 0.1 3.4e-175 582.6 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LSM PF01423.22 gi|124026985|ref|YP_001012305.1| - 1e-19 69.9 0.1 1.2e-19 69.7 0.1 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|124026985|ref|YP_001012305.1| - 8.5e-05 22.6 0.1 0.00011 22.3 0.1 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF883 PF05957.13 gi|124026986|ref|YP_001012306.1| - 0.03 14.9 1.6 0.31 11.7 0.4 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) IGF2_C PF08365.11 gi|124026986|ref|YP_001012306.1| - 0.2 11.7 0.5 0.37 10.8 0.5 1.4 1 0 0 1 1 1 0 Insulin-like growth factor II E-peptide Lycopene_cycl PF05834.12 gi|124026987|ref|YP_001012307.1| - 3.9e-07 29.5 0.3 1.1e-06 28.0 0.3 1.6 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|124026987|ref|YP_001012307.1| - 1.7e-05 24.2 0.0 2.7e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|124026987|ref|YP_001012307.1| - 8.9e-05 22.2 1.1 0.028 14.0 0.4 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase SpecificRecomb PF10136.9 gi|124026987|ref|YP_001012307.1| - 0.069 11.5 0.0 0.1 10.9 0.0 1.2 1 0 0 1 1 1 0 Site-specific recombinase Pyr_redox PF00070.27 gi|124026987|ref|YP_001012307.1| - 0.12 13.0 0.4 37 5.0 0.1 2.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|124026987|ref|YP_001012307.1| - 0.21 10.2 0.3 0.7 8.5 0.7 1.6 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox_3 PF13738.6 gi|124026987|ref|YP_001012307.1| - 0.22 10.7 0.0 3.5 6.8 0.4 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|124026987|ref|YP_001012307.1| - 0.34 9.9 3.7 0.31 10.1 1.6 1.8 2 0 0 2 2 2 0 FAD binding domain Met_10 PF02475.16 gi|124026988|ref|YP_001012308.1| - 1.3e-56 191.5 0.0 1.8e-56 191.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|124026988|ref|YP_001012308.1| - 2.8e-06 26.8 0.0 4e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|124026988|ref|YP_001012308.1| - 5.6e-06 26.0 0.0 8.9e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|124026988|ref|YP_001012308.1| - 4.8e-05 22.9 0.0 9e-05 22.0 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|124026988|ref|YP_001012308.1| - 0.00065 19.7 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|124026988|ref|YP_001012308.1| - 0.0018 17.9 0.0 0.0061 16.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_16 PF10294.9 gi|124026988|ref|YP_001012308.1| - 0.0018 18.0 0.0 0.0066 16.2 0.0 1.8 2 0 0 2 2 2 1 Lysine methyltransferase GCD14 PF08704.10 gi|124026988|ref|YP_001012308.1| - 0.016 14.9 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Cons_hypoth95 PF03602.15 gi|124026988|ref|YP_001012308.1| - 0.023 14.3 0.0 0.075 12.7 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|124026988|ref|YP_001012308.1| - 0.028 15.1 0.0 0.14 12.9 0.0 2.0 1 1 1 2 2 2 0 Methyltransferase domain Vir_act_alpha_C PF10400.9 gi|124026989|ref|YP_001012309.1| - 0.016 15.9 0.9 0.029 15.1 0.9 1.5 1 0 0 1 1 1 0 Virulence activator alpha C-term Med9 PF07544.13 gi|124026989|ref|YP_001012309.1| - 0.025 14.6 4.5 0.21 11.7 2.8 2.3 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Lzipper-MIP1 PF14389.6 gi|124026989|ref|YP_001012309.1| - 0.031 14.6 3.1 0.066 13.5 3.1 1.5 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 MerR-DNA-bind PF09278.11 gi|124026989|ref|YP_001012309.1| - 0.092 13.3 5.0 0.16 12.5 5.0 1.4 1 0 0 1 1 1 0 MerR, DNA binding CCDC24 PF15669.5 gi|124026989|ref|YP_001012309.1| - 0.4 10.5 6.0 0.43 10.4 5.0 1.5 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 24 family CK2S PF15011.6 gi|124026989|ref|YP_001012309.1| - 0.71 9.7 3.6 13 5.6 3.0 2.5 1 1 1 3 3 3 0 Casein Kinase 2 substrate Lon_C PF05362.13 gi|124026990|ref|YP_001012310.1| - 8.6e-09 35.2 0.0 1.5e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain UDG PF03167.19 gi|124026991|ref|YP_001012311.1| - 2.9e-45 154.0 0.0 4.2e-45 153.5 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PNP_UDP_1 PF01048.20 gi|124026992|ref|YP_001012312.1| - 3.5e-40 137.7 1.1 4.2e-40 137.5 1.1 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Peptidase_S11 PF00768.20 gi|124026992|ref|YP_001012312.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase DUF348 PF03990.14 gi|124026993|ref|YP_001012313.1| - 0.00075 19.2 1.2 0.19 11.5 0.0 2.4 2 0 0 2 2 2 2 G5-linked-Ubiquitin-like domain Ub-Mut7C PF14451.6 gi|124026993|ref|YP_001012313.1| - 0.051 13.4 0.1 0.069 13.0 0.1 1.3 1 0 0 1 1 1 0 Mut7-C ubiquitin ATP_bind_3 PF01171.20 gi|124026994|ref|YP_001012314.1| - 2.3e-14 53.6 0.0 7.5e-14 51.9 0.0 1.8 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|124026994|ref|YP_001012314.1| - 1.2e-05 24.3 0.0 1.9e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase QueC PF06508.13 gi|124026994|ref|YP_001012314.1| - 0.0033 16.9 0.0 0.011 15.3 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC RecR PF02132.15 gi|124026994|ref|YP_001012314.1| - 0.0057 16.2 1.5 0.0057 16.2 1.5 2.9 3 0 0 3 3 3 1 RecR protein EndIII_4Fe-2S PF10576.9 gi|124026994|ref|YP_001012314.1| - 0.048 14.0 0.5 0.2 12.1 0.5 2.1 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III zf-RRN7 PF11781.8 gi|124026994|ref|YP_001012314.1| - 0.85 9.4 0.1 0.85 9.4 0.1 2.5 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 C1_1 PF00130.22 gi|124026994|ref|YP_001012314.1| - 2.3 8.2 4.9 6.4 6.7 0.8 2.8 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) BPD_transp_2 PF02653.16 gi|124026996|ref|YP_001012316.1| - 9.7e-29 100.4 48.3 1.5e-28 99.7 48.3 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF5317 PF17248.2 gi|124026996|ref|YP_001012316.1| - 0.49 10.4 7.4 0.084 12.9 1.8 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5317) BPD_transp_2 PF02653.16 gi|124026997|ref|YP_001012317.1| - 1.6e-31 109.5 40.1 1.6e-31 109.5 40.1 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|124026998|ref|YP_001012318.1| - 2.7e-45 154.2 0.0 2.8e-31 108.9 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|124026998|ref|YP_001012318.1| - 5.3e-12 46.2 1.0 9.3e-06 25.7 0.4 3.1 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|124026998|ref|YP_001012318.1| - 0.0013 18.4 0.3 0.0083 15.8 0.0 2.4 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|124026998|ref|YP_001012318.1| - 0.0051 17.2 1.4 0.11 12.9 0.5 2.6 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|124026998|ref|YP_001012318.1| - 0.052 13.5 0.2 1 9.3 0.0 2.7 3 0 0 3 3 3 0 NACHT domain RsgA_GTPase PF03193.16 gi|124026998|ref|YP_001012318.1| - 0.084 12.8 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|124026998|ref|YP_001012318.1| - 0.094 13.2 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|124026998|ref|YP_001012318.1| - 0.1 12.3 0.0 2 8.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DLIC PF05783.11 gi|124026998|ref|YP_001012318.1| - 0.12 11.1 0.0 0.32 9.8 0.0 1.4 1 1 1 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_13 PF13166.6 gi|124026998|ref|YP_001012318.1| - 0.29 9.7 0.0 0.41 9.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain Ribosomal_L13e PF01294.18 gi|124026999|ref|YP_001012319.1| - 3.1e-11 43.5 0.0 3.1e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e AsnC_trans_reg PF01037.21 gi|124027000|ref|YP_001012320.1| - 5e-15 55.2 0.1 8.6e-15 54.5 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|124027000|ref|YP_001012320.1| - 4.3e-12 45.4 0.5 7.3e-12 44.7 0.2 1.5 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|124027000|ref|YP_001012320.1| - 5.9e-11 42.0 1.6 8.1e-11 41.6 0.8 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|124027000|ref|YP_001012320.1| - 9.3e-07 28.6 0.2 2.2e-06 27.5 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|124027000|ref|YP_001012320.1| - 3.8e-06 26.7 0.2 8e-06 25.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|124027000|ref|YP_001012320.1| - 1.8e-05 24.7 0.3 3.9e-05 23.6 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|124027000|ref|YP_001012320.1| - 5.2e-05 23.0 0.7 0.0001 22.0 0.7 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|124027000|ref|YP_001012320.1| - 0.0001 22.1 0.1 0.00018 21.4 0.1 1.4 1 0 0 1 1 1 1 MarR family AsnC_trans_reg2 PF17805.1 gi|124027000|ref|YP_001012320.1| - 0.00015 21.8 0.0 0.00057 20.0 0.0 1.8 2 0 0 2 2 2 1 AsnC-like ligand binding domain LexA_DNA_bind PF01726.16 gi|124027000|ref|YP_001012320.1| - 0.00034 20.3 0.1 0.00063 19.5 0.1 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_9 PF08221.11 gi|124027000|ref|YP_001012320.1| - 0.00036 20.6 0.6 0.0014 18.7 0.1 2.0 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_27 PF13463.6 gi|124027000|ref|YP_001012320.1| - 0.00098 19.6 0.4 0.0022 18.4 0.2 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|124027000|ref|YP_001012320.1| - 0.002 17.9 0.1 0.0037 17.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|124027000|ref|YP_001012320.1| - 0.0023 17.6 1.6 0.058 13.1 0.2 3.0 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_40 PF14493.6 gi|124027000|ref|YP_001012320.1| - 0.0027 18.1 0.0 0.034 14.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|124027000|ref|YP_001012320.1| - 0.0078 15.9 0.3 0.038 13.7 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_23 PF13384.6 gi|124027000|ref|YP_001012320.1| - 0.01 15.6 0.1 0.051 13.4 0.2 2.1 1 1 1 2 2 2 1 Homeodomain-like domain NUMOD1 PF07453.13 gi|124027000|ref|YP_001012320.1| - 0.012 15.8 0.3 3 8.2 0.1 2.4 2 0 0 2 2 2 0 NUMOD1 domain HTH_38 PF13936.6 gi|124027000|ref|YP_001012320.1| - 0.013 15.3 0.1 0.25 11.1 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|124027000|ref|YP_001012320.1| - 0.019 15.3 0.5 0.29 11.5 0.1 2.4 2 0 0 2 2 2 0 Transcriptional regulator Penicillinase_R PF03965.16 gi|124027000|ref|YP_001012320.1| - 0.02 15.3 0.1 0.035 14.4 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor DUF742 PF05331.11 gi|124027000|ref|YP_001012320.1| - 0.03 14.1 0.2 0.053 13.3 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_DeoR PF08220.12 gi|124027000|ref|YP_001012320.1| - 0.033 13.9 0.3 0.058 13.1 0.3 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|124027000|ref|YP_001012320.1| - 0.036 14.1 0.1 0.065 13.2 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RP-C PF03428.13 gi|124027000|ref|YP_001012320.1| - 0.038 13.6 0.3 0.066 12.9 0.3 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain Mga PF05043.13 gi|124027000|ref|YP_001012320.1| - 0.044 14.4 0.1 0.11 13.1 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain Fe_dep_repress PF01325.19 gi|124027000|ref|YP_001012320.1| - 0.05 13.8 0.1 0.12 12.6 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|124027000|ref|YP_001012320.1| - 0.077 12.4 0.8 0.11 11.9 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 FeoC PF09012.10 gi|124027000|ref|YP_001012320.1| - 0.12 12.5 0.1 0.25 11.4 0.1 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF211 PF02680.14 gi|124027001|ref|YP_001012321.1| - 3.2e-36 123.4 2.3 3.5e-36 123.2 2.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 tRNA_bind PF01588.20 gi|124027002|ref|YP_001012322.1| - 1.6e-24 85.8 0.0 1.8e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain Sacchrp_dh_C PF16653.5 gi|124027003|ref|YP_001012323.1| - 8e-27 95.0 0.0 1.1e-26 94.6 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain TrkA_N PF02254.18 gi|124027003|ref|YP_001012323.1| - 1.9e-06 28.1 0.0 4.8e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|124027003|ref|YP_001012323.1| - 0.00094 18.6 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|124027003|ref|YP_001012323.1| - 0.0052 16.4 0.0 0.011 15.3 0.0 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|124027003|ref|YP_001012323.1| - 0.019 15.2 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|124027003|ref|YP_001012323.1| - 0.022 15.3 0.0 0.062 13.9 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|124027003|ref|YP_001012323.1| - 0.029 14.0 0.0 0.068 12.8 0.0 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|124027003|ref|YP_001012323.1| - 0.14 12.4 0.0 0.33 11.2 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Gp_dh_N PF00044.24 gi|124027003|ref|YP_001012323.1| - 0.17 12.2 0.1 0.39 11.1 0.1 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABC_tran PF00005.27 gi|124027004|ref|YP_001012324.1| - 4.5e-26 92.0 0.0 6.4e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027004|ref|YP_001012324.1| - 4.4e-15 56.3 1.0 6.1e-08 32.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027004|ref|YP_001012324.1| - 0.0002 20.9 0.0 0.3 10.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|124027004|ref|YP_001012324.1| - 0.00022 21.5 0.2 0.0022 18.3 0.2 2.3 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|124027004|ref|YP_001012324.1| - 0.00022 20.9 0.0 0.00035 20.3 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|124027004|ref|YP_001012324.1| - 0.0011 19.5 0.2 0.0024 18.4 0.2 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|124027004|ref|YP_001012324.1| - 0.0038 17.0 0.0 0.0079 15.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|124027004|ref|YP_001012324.1| - 0.0039 16.9 0.0 0.0095 15.7 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|124027004|ref|YP_001012324.1| - 0.004 16.9 0.1 0.0073 16.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|124027004|ref|YP_001012324.1| - 0.0042 17.5 0.0 0.006 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|124027004|ref|YP_001012324.1| - 0.007 16.8 0.0 0.013 15.9 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|124027004|ref|YP_001012324.1| - 0.016 15.2 0.0 0.056 13.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|124027004|ref|YP_001012324.1| - 0.034 14.2 0.0 0.043 13.9 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.6 gi|124027004|ref|YP_001012324.1| - 0.063 13.8 0.0 0.27 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|124027004|ref|YP_001012324.1| - 0.079 13.0 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_31 PF13614.6 gi|124027004|ref|YP_001012324.1| - 0.084 12.8 0.0 0.41 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|124027004|ref|YP_001012324.1| - 0.14 11.9 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_33 PF13671.6 gi|124027004|ref|YP_001012324.1| - 0.17 12.0 0.1 0.25 11.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|124027004|ref|YP_001012324.1| - 0.19 11.6 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ABC2_membrane_3 PF12698.7 gi|124027005|ref|YP_001012325.1| - 3.1e-22 79.2 17.0 3.8e-22 78.9 17.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|124027005|ref|YP_001012325.1| - 1.2e-19 70.7 23.0 2.2e-19 69.8 23.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|124027005|ref|YP_001012325.1| - 5.2e-10 39.1 20.6 1e-09 38.1 14.7 2.9 2 1 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|124027005|ref|YP_001012325.1| - 2.4e-05 24.4 8.8 2.4e-05 24.4 8.8 3.0 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|124027005|ref|YP_001012325.1| - 0.003 17.1 22.6 0.013 15.1 18.7 2.9 2 1 0 2 2 2 1 ABC-2 family transporter protein SRP19 PF01922.17 gi|124027006|ref|YP_001012326.1| - 2.1e-19 70.3 0.1 3e-19 69.7 0.1 1.2 1 0 0 1 1 1 1 SRP19 protein Amidohydro_1 PF01979.20 gi|124027007|ref|YP_001012327.1| - 5.9e-21 75.2 0.0 2.6e-20 73.0 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|124027007|ref|YP_001012327.1| - 7.2e-14 52.1 0.2 2.8e-09 37.0 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family DHODB_Fe-S_bind PF10418.9 gi|124027008|ref|YP_001012328.1| - 9.3e-07 28.6 7.3 1.5e-06 27.9 7.3 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|124027008|ref|YP_001012328.1| - 0.055 14.1 0.0 0.16 12.7 0.0 1.7 1 1 0 1 1 1 0 Oxidoreductase NAD-binding domain PyrI PF01948.18 gi|124027009|ref|YP_001012329.1| - 1.3e-34 118.3 0.4 1.6e-34 118.0 0.4 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|124027009|ref|YP_001012329.1| - 2e-16 59.6 0.0 3e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|124027010|ref|YP_001012330.1| - 2.2e-44 151.1 0.0 3.1e-44 150.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|124027010|ref|YP_001012330.1| - 1.7e-21 76.9 0.0 2.3e-21 76.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Pribosyltran PF00156.27 gi|124027011|ref|YP_001012331.1| - 5.9e-22 77.9 0.8 8.2e-22 77.4 0.8 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|124027011|ref|YP_001012331.1| - 0.00014 21.4 0.0 0.00018 21.0 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|124027011|ref|YP_001012331.1| - 0.0021 17.6 0.1 0.14 11.7 0.1 2.1 1 1 1 2 2 2 2 Phosphoribosyl transferase Pribosyl_synth PF14572.6 gi|124027011|ref|YP_001012331.1| - 0.02 14.9 0.1 0.033 14.2 0.1 1.5 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain OMPdecase PF00215.24 gi|124027012|ref|YP_001012332.1| - 7.6e-27 94.4 0.0 9.2e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PALP PF00291.25 gi|124027013|ref|YP_001012333.1| - 1.2e-56 192.3 4.7 1.4e-56 192.1 4.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CTP_synth_N PF06418.14 gi|124027014|ref|YP_001012334.1| - 9.4e-127 421.8 0.1 1.2e-126 421.5 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|124027014|ref|YP_001012334.1| - 1.3e-46 158.8 0.0 2e-46 158.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|124027014|ref|YP_001012334.1| - 8.6e-10 38.7 0.0 1.2e-08 35.0 0.0 2.3 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|124027014|ref|YP_001012334.1| - 0.0009 19.3 0.0 0.0049 16.9 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MarR PF01047.22 gi|124027015|ref|YP_001012335.1| - 0.0011 18.9 0.1 1.8 8.5 0.0 2.1 2 0 0 2 2 2 2 MarR family FUR PF01475.19 gi|124027016|ref|YP_001012336.1| - 4.7e-15 55.8 0.0 4.9e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.14 gi|124027016|ref|YP_001012336.1| - 0.013 15.5 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|124027016|ref|YP_001012336.1| - 0.032 14.2 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF3104 PF11302.8 gi|124027016|ref|YP_001012336.1| - 0.033 13.9 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3104) HTH_24 PF13412.6 gi|124027016|ref|YP_001012336.1| - 0.059 12.9 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cdc6_C PF09079.11 gi|124027016|ref|YP_001012336.1| - 0.077 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain TrmB PF01978.19 gi|124027016|ref|YP_001012336.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|124027016|ref|YP_001012336.1| - 0.11 12.5 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|124027016|ref|YP_001012336.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|124027016|ref|YP_001012336.1| - 0.17 11.7 0.0 0.33 10.8 0.0 1.6 1 1 0 1 1 1 0 IclR helix-turn-helix domain CBS PF00571.28 gi|124027017|ref|YP_001012337.1| - 3.3e-33 113.9 4.3 9.1e-16 58.1 0.4 3.0 2 0 0 2 2 2 2 CBS domain HrcA_DNA-bdg PF03444.15 gi|124027017|ref|YP_001012337.1| - 6.2e-33 112.3 0.2 1.5e-32 111.1 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|124027017|ref|YP_001012337.1| - 2.9e-09 37.1 0.1 6.8e-09 36.0 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|124027017|ref|YP_001012337.1| - 0.00018 21.4 0.4 0.00052 19.9 0.4 1.9 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|124027017|ref|YP_001012337.1| - 0.0031 17.4 0.0 0.011 15.7 0.0 2.0 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|124027017|ref|YP_001012337.1| - 0.018 14.9 0.1 0.038 13.9 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|124027017|ref|YP_001012337.1| - 0.019 14.5 3.7 0.095 12.3 1.1 3.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|124027017|ref|YP_001012337.1| - 0.02 14.7 0.0 0.06 13.1 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|124027017|ref|YP_001012337.1| - 0.048 13.9 0.3 0.1 12.8 0.3 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|124027017|ref|YP_001012337.1| - 0.073 13.1 0.0 0.22 11.6 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix HTH_38 PF13936.6 gi|124027017|ref|YP_001012337.1| - 0.091 12.5 0.8 1.3 8.9 0.6 2.9 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|124027017|ref|YP_001012337.1| - 0.19 11.7 0.1 0.4 10.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_terminase PF10668.9 gi|124027017|ref|YP_001012337.1| - 0.21 11.7 0.3 2.9 8.0 0.1 2.4 2 0 0 2 2 2 0 Phage terminase small subunit Bactofilin PF04519.13 gi|124027017|ref|YP_001012337.1| - 0.39 11.0 3.4 0.36 11.1 0.4 2.3 2 1 0 2 2 2 0 Polymer-forming cytoskeletal PRC PF05239.16 gi|124027017|ref|YP_001012337.1| - 1.1 9.3 9.0 2.8 8.1 0.2 4.3 3 2 0 4 4 4 0 PRC-barrel domain NfeD PF01957.18 gi|124027018|ref|YP_001012338.1| - 2.3e-11 43.9 0.8 2.3e-11 43.9 0.8 3.5 4 1 0 4 4 4 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|124027018|ref|YP_001012338.1| - 5.9e-07 29.6 0.1 5.9e-07 29.6 0.1 2.4 2 1 1 3 3 3 1 Clp protease SDH_sah PF01972.16 gi|124027018|ref|YP_001012338.1| - 4.8e-05 22.5 0.6 7.6e-05 21.8 0.6 1.4 1 0 0 1 1 1 1 Serine dehydrogenase proteinase HlyIII PF03006.20 gi|124027019|ref|YP_001012339.1| - 0.88 9.2 5.5 1.1 8.9 5.5 1.0 1 0 0 1 1 1 0 Haemolysin-III related DUF2298 PF10060.9 gi|124027019|ref|YP_001012339.1| - 1.1 7.9 9.0 1.3 7.7 9.0 1.0 1 0 0 1 1 1 0 Uncharacterized membrane protein (DUF2298) DUF1129 PF06570.11 gi|124027019|ref|YP_001012339.1| - 1.9 7.9 6.3 2.9 7.3 6.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) RHH_1 PF01402.21 gi|124027020|ref|YP_001012340.1| - 1e-11 44.3 0.2 1.3e-11 43.9 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|124027020|ref|YP_001012340.1| - 0.00014 22.0 0.0 0.00017 21.8 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|124027020|ref|YP_001012340.1| - 0.0032 17.3 0.0 0.0048 16.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB ParD_antitoxin PF03693.14 gi|124027020|ref|YP_001012340.1| - 0.0042 17.4 0.0 0.0049 17.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ATP_bind_1 PF03029.17 gi|124027022|ref|YP_001012342.1| - 5.6e-55 186.7 0.0 6.7e-55 186.5 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|124027022|ref|YP_001012342.1| - 0.00034 20.9 0.0 0.0043 17.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|124027022|ref|YP_001012342.1| - 0.0028 17.3 0.0 0.0067 16.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|124027022|ref|YP_001012342.1| - 0.004 17.1 0.0 5.4 6.9 0.0 3.0 3 0 0 3 3 3 1 RsgA GTPase AAA_16 PF13191.6 gi|124027022|ref|YP_001012342.1| - 0.0042 17.5 0.0 0.005 17.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Dynamin_N PF00350.23 gi|124027022|ref|YP_001012342.1| - 0.0047 17.0 0.3 0.37 10.8 0.0 2.2 2 0 0 2 2 2 1 Dynamin family IstB_IS21 PF01695.17 gi|124027022|ref|YP_001012342.1| - 0.013 15.2 0.0 0.027 14.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein FeoB_N PF02421.18 gi|124027022|ref|YP_001012342.1| - 0.014 14.9 0.0 0.1 12.1 0.0 1.9 2 0 0 2 2 2 0 Ferrous iron transport protein B MMR_HSR1 PF01926.23 gi|124027022|ref|YP_001012342.1| - 0.021 14.9 0.0 2.3 8.4 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|124027022|ref|YP_001012342.1| - 0.034 13.6 0.0 0.053 12.9 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain NACHT PF05729.12 gi|124027022|ref|YP_001012342.1| - 0.064 13.2 0.0 0.18 11.7 0.0 1.7 2 1 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|124027022|ref|YP_001012342.1| - 0.082 12.6 0.0 0.14 11.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|124027022|ref|YP_001012342.1| - 0.086 13.0 0.0 0.11 12.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|124027022|ref|YP_001012342.1| - 0.096 12.5 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system Zeta_toxin PF06414.12 gi|124027022|ref|YP_001012342.1| - 0.096 11.9 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|124027022|ref|YP_001012342.1| - 0.16 11.7 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF488 PF04343.13 gi|124027024|ref|YP_001012344.1| - 8.9e-20 71.5 0.1 7.2e-18 65.3 0.1 2.1 1 1 0 1 1 1 1 Protein of unknown function, DUF488 Importin_rep PF18773.1 gi|124027024|ref|YP_001012344.1| - 0.11 12.2 0.1 0.22 11.3 0.1 1.5 1 0 0 1 1 1 0 Importin 13 repeat ThiP_synth PF10120.9 gi|124027025|ref|YP_001012345.1| - 7.1e-47 159.1 0.4 1.4e-46 158.1 0.4 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_23 PF13384.6 gi|124027025|ref|YP_001012345.1| - 4.6e-07 29.5 3.5 5.6e-06 26.0 0.3 3.0 3 0 0 3 3 3 1 Homeodomain-like domain HTH_38 PF13936.6 gi|124027025|ref|YP_001012345.1| - 0.00021 21.0 1.1 0.00057 19.6 0.4 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|124027025|ref|YP_001012345.1| - 0.00049 20.4 0.4 0.0016 18.7 0.4 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|124027025|ref|YP_001012345.1| - 0.0014 18.5 0.2 0.0037 17.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|124027025|ref|YP_001012345.1| - 0.0085 16.1 0.1 0.066 13.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix MarR_2 PF12802.7 gi|124027025|ref|YP_001012345.1| - 0.022 14.6 0.4 0.083 12.8 0.4 2.0 1 0 0 1 1 1 0 MarR family Nitro_FeMo-Co PF02579.17 gi|124027025|ref|YP_001012345.1| - 0.033 14.5 0.0 0.07 13.5 0.0 1.5 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor Sigma70_r4_2 PF08281.12 gi|124027025|ref|YP_001012345.1| - 0.04 13.6 0.0 0.13 12.0 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|124027025|ref|YP_001012345.1| - 0.046 13.6 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|124027025|ref|YP_001012345.1| - 0.051 13.1 0.2 0.2 11.2 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 gi|124027025|ref|YP_001012345.1| - 0.066 13.1 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 gi|124027025|ref|YP_001012345.1| - 0.082 12.3 0.1 0.19 11.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.6 gi|124027025|ref|YP_001012345.1| - 0.12 12.4 1.1 0.42 10.7 0.2 2.3 2 0 0 2 2 2 0 Winged helix-turn helix Peptidase_M20 PF01546.28 gi|124027026|ref|YP_001012346.1| - 9.4e-32 110.4 0.0 1.1e-31 110.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|124027026|ref|YP_001012346.1| - 1.2e-10 41.2 0.0 2e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|124027026|ref|YP_001012346.1| - 1e-09 38.4 0.0 1.4e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|124027026|ref|YP_001012346.1| - 0.033 13.2 0.0 4.9 6.1 0.0 2.9 3 0 0 3 3 3 0 M42 glutamyl aminopeptidase TIR_2 PF13676.6 gi|124027026|ref|YP_001012346.1| - 0.13 12.9 0.1 0.91 10.1 0.1 2.2 2 0 0 2 2 2 0 TIR domain TP_methylase PF00590.20 gi|124027028|ref|YP_001012348.1| - 4.8e-29 101.8 3.0 5.6e-29 101.6 3.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases OMPdecase PF00215.24 gi|124027029|ref|YP_001012349.1| - 2e-20 73.3 0.8 3.3e-20 72.6 0.8 1.5 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PEP_mutase PF13714.6 gi|124027029|ref|YP_001012349.1| - 0.0057 16.1 3.8 0.0066 15.9 0.3 2.3 1 1 2 3 3 3 1 Phosphoenolpyruvate phosphomutase ThiG PF05690.14 gi|124027029|ref|YP_001012349.1| - 0.0081 15.5 3.4 0.0081 15.5 3.4 1.6 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|124027029|ref|YP_001012349.1| - 0.015 14.5 2.2 0.018 14.2 0.7 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF561) NanE PF04131.14 gi|124027029|ref|YP_001012349.1| - 0.034 13.3 1.7 0.14 11.3 1.7 2.3 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.19 gi|124027029|ref|YP_001012349.1| - 0.072 12.5 1.0 0.13 11.6 1.0 1.5 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family MoeA_N PF03453.17 gi|124027030|ref|YP_001012350.1| - 1.1e-32 113.0 0.9 2.9e-32 111.6 0.6 1.9 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|124027030|ref|YP_001012350.1| - 3.2e-12 46.3 0.0 6.1e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|124027030|ref|YP_001012350.1| - 3.2e-05 24.0 0.1 0.00016 21.8 0.1 2.3 1 1 0 1 1 1 1 MoeA C-terminal region (domain IV) CLP1_P PF16575.5 gi|124027031|ref|YP_001012351.1| - 6.1e-23 81.6 0.0 8.4e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Mg_chelatase PF01078.21 gi|124027031|ref|YP_001012351.1| - 0.0061 16.0 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI CoaE PF01121.20 gi|124027031|ref|YP_001012351.1| - 0.078 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_29 PF13555.6 gi|124027031|ref|YP_001012351.1| - 0.098 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain dNK PF01712.19 gi|124027031|ref|YP_001012351.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase ThiS PF02597.20 gi|124027033|ref|YP_001012353.1| - 1.2e-16 61.1 0.1 1.3e-16 61.0 0.1 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|124027033|ref|YP_001012353.1| - 0.0016 18.7 0.0 0.0018 18.6 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) Radical_SAM PF04055.21 gi|124027035|ref|YP_001012355.1| - 1.4e-18 67.8 0.0 2.9e-18 66.8 0.0 1.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|124027035|ref|YP_001012355.1| - 1.6e-08 34.9 0.0 2.4e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|124027035|ref|YP_001012355.1| - 9.8e-05 22.5 0.0 0.00017 21.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain AAA_18 PF13238.6 gi|124027036|ref|YP_001012356.1| - 2.7e-07 31.2 0.0 3e-06 27.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|124027036|ref|YP_001012356.1| - 1.5e-05 25.3 2.0 0.00073 19.8 2.0 2.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|124027036|ref|YP_001012356.1| - 7.9e-05 22.8 0.0 0.00018 21.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|124027036|ref|YP_001012356.1| - 0.00036 20.3 0.0 0.023 14.4 0.0 2.3 1 1 0 1 1 1 1 Thymidylate kinase AAA_17 PF13207.6 gi|124027036|ref|YP_001012356.1| - 0.012 16.0 0.1 8.8 6.8 0.0 2.8 3 1 0 3 3 3 0 AAA domain dNK PF01712.19 gi|124027036|ref|YP_001012356.1| - 0.024 14.5 0.0 0.58 10.0 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase Peripla_BP_2 PF01497.18 gi|124027036|ref|YP_001012356.1| - 0.025 14.2 0.0 2.5 7.6 0.0 2.1 1 1 0 2 2 2 0 Periplasmic binding protein AAA_16 PF13191.6 gi|124027036|ref|YP_001012356.1| - 0.026 14.9 2.6 0.15 12.4 2.6 2.4 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|124027036|ref|YP_001012356.1| - 0.069 12.8 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|124027036|ref|YP_001012356.1| - 0.15 12.5 0.0 0.32 11.5 0.0 1.5 1 0 0 1 1 1 0 ABC transporter NRDD PF13597.6 gi|124027037|ref|YP_001012357.1| - 5.9e-138 461.1 0.0 6.6e-138 460.9 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase TackOD1 PF18551.1 gi|124027037|ref|YP_001012357.1| - 0.19 11.3 0.0 0.38 10.4 0.0 1.4 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc_ribbon_2 PF13240.6 gi|124027037|ref|YP_001012357.1| - 0.28 11.0 1.1 0.74 9.6 1.1 1.7 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|124027037|ref|YP_001012357.1| - 0.41 10.1 3.7 0.99 8.9 3.7 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|124027037|ref|YP_001012357.1| - 3.4 7.9 5.0 19 5.5 0.7 2.6 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|124027037|ref|YP_001012357.1| - 3.6 7.6 5.5 8.3 6.5 0.2 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|124027037|ref|YP_001012357.1| - 5.7 6.7 5.7 4 7.2 0.5 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CarboxypepD_reg PF13620.6 gi|124027039|ref|YP_001012359.1| - 5.3e-05 23.4 1.0 0.0017 18.6 0.2 3.5 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|124027039|ref|YP_001012359.1| - 0.011 15.8 3.3 0.018 15.0 0.5 2.9 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) PQQ_2 PF13360.6 gi|124027039|ref|YP_001012359.1| - 0.012 15.2 0.1 0.041 13.5 0.1 2.0 1 0 0 1 1 1 0 PQQ-like domain DUF4394 PF14339.6 gi|124027039|ref|YP_001012359.1| - 1.1 8.6 5.4 1.9 7.8 0.0 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF4394) TFB6 PF17110.5 gi|124027040|ref|YP_001012360.1| - 0.071 12.8 1.3 0.26 11.0 1.3 1.9 1 0 0 1 1 1 0 Subunit 11 of the general transcription factor TFIIH T3SS_needle_E PF08988.10 gi|124027040|ref|YP_001012360.1| - 0.14 12.4 15.1 0.78 9.9 3.0 5.0 4 1 0 4 4 4 0 Type III secretion system, cytoplasmic E component of needle TPR_4 PF07721.14 gi|124027040|ref|YP_001012360.1| - 0.27 12.0 3.0 46 5.1 0.0 4.3 2 1 1 3 3 3 0 Tetratricopeptide repeat SbsC_C PF18058.1 gi|124027040|ref|YP_001012360.1| - 0.27 11.4 21.1 4.3 7.6 9.0 4.1 3 2 0 3 3 3 0 SbsC C-terminal domain TPR_1 PF00515.28 gi|124027040|ref|YP_001012360.1| - 0.28 11.1 3.8 0.9 9.5 0.6 3.0 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|124027040|ref|YP_001012360.1| - 0.32 11.7 13.7 2 9.1 1.1 4.4 4 1 0 4 4 3 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|124027040|ref|YP_001012360.1| - 0.96 9.2 6.1 0.89 9.3 0.9 3.1 2 1 1 3 3 3 0 TPR repeat LPD22 PF18834.1 gi|124027040|ref|YP_001012360.1| - 1.3 9.3 11.6 0.76 10.0 2.9 3.8 2 1 0 2 2 2 0 Large polyvalent protein associated domain 22 TPR_14 PF13428.6 gi|124027040|ref|YP_001012360.1| - 1.3 10.0 14.5 3.7 8.6 2.4 5.1 4 2 1 5 5 4 0 Tetratricopeptide repeat RPN7 PF10602.9 gi|124027040|ref|YP_001012360.1| - 5.9 6.6 20.5 0.41 10.3 9.9 3.5 3 2 1 4 4 4 0 26S proteasome subunit RPN7 MIT PF04212.18 gi|124027040|ref|YP_001012360.1| - 7.7 6.7 25.8 0.35 11.0 11.8 4.9 4 1 0 4 4 4 0 MIT (microtubule interacting and transport) domain TPR_19 PF14559.6 gi|124027040|ref|YP_001012360.1| - 8.6 6.9 17.1 4.9 7.8 0.5 4.7 4 2 1 5 5 5 0 Tetratricopeptide repeat NADH-u_ox-rdase PF10785.9 gi|124027041|ref|YP_001012361.1| - 0.17 12.6 1.7 1.7 9.4 1.7 2.1 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Phageshock_PspG PF09583.10 gi|124027041|ref|YP_001012361.1| - 0.2 11.9 5.4 0.52 10.6 5.4 1.7 1 0 0 1 1 1 0 Phage shock protein G (Phageshock_PspG) CBS PF00571.28 gi|124027042|ref|YP_001012362.1| - 2.6e-56 187.9 31.8 1.7e-13 50.8 2.2 8.1 8 0 0 8 8 8 7 CBS domain IF3_N PF05198.16 gi|124027042|ref|YP_001012362.1| - 0.058 13.7 2.2 4.8 7.5 0.1 4.0 4 0 0 4 4 4 0 Translation initiation factor IF-3, N-terminal domain DUF3659 PF12396.8 gi|124027042|ref|YP_001012362.1| - 1.9 8.4 7.6 12 5.9 0.2 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF3659) GTP_EFTU_D4 PF14578.6 gi|124027042|ref|YP_001012362.1| - 2.7 7.9 6.0 3.6 7.5 0.3 3.8 5 0 0 5 5 5 0 Elongation factor Tu domain 4 bPH_5 PF10882.8 gi|124027043|ref|YP_001012363.1| - 0.019 15.0 0.0 0.031 14.3 0.0 1.4 2 0 0 2 2 2 0 Bacterial PH domain Spore_YunB PF09560.10 gi|124027043|ref|YP_001012363.1| - 0.064 13.3 0.1 0.12 12.4 0.0 1.5 2 0 0 2 2 2 0 Sporulation protein YunB (Spo_YunB) bPH_5 PF10882.8 gi|124027044|ref|YP_001012364.1| - 0.19 11.8 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial PH domain DUF2892 PF11127.8 gi|124027044|ref|YP_001012364.1| - 7.1 6.8 8.2 28 4.9 8.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) PIN PF01850.21 gi|124027046|ref|YP_001012366.1| - 0.00044 20.8 0.2 0.00049 20.6 0.2 1.1 1 0 0 1 1 1 1 PIN domain TPR_7 PF13176.6 gi|124027046|ref|YP_001012366.1| - 0.15 12.2 0.2 7.5 6.8 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat NTP_transf_3 PF12804.7 gi|124027047|ref|YP_001012367.1| - 1.5e-18 67.6 0.7 1.2e-17 64.8 0.7 2.1 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|124027047|ref|YP_001012367.1| - 0.00011 21.9 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|124027047|ref|YP_001012367.1| - 0.05 13.3 0.0 0.073 12.8 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDP-OH_P_transf PF01066.21 gi|124027048|ref|YP_001012368.1| - 4.7e-07 30.5 0.3 4.7e-07 30.5 0.3 2.7 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase ATP-grasp_5 PF13549.6 gi|124027049|ref|YP_001012369.1| - 4.4e-84 281.4 0.6 4.9e-84 281.2 0.6 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|124027049|ref|YP_001012369.1| - 0.0036 16.9 1.2 0.014 15.0 0.3 2.1 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|124027049|ref|YP_001012369.1| - 0.012 15.2 0.1 0.047 13.2 0.1 1.9 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|124027049|ref|YP_001012369.1| - 0.04 13.5 0.0 0.072 12.7 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain Lipase_GDSL_2 PF13472.6 gi|124027049|ref|YP_001012369.1| - 0.041 14.3 0.1 0.11 12.9 0.1 1.8 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Malic_M PF03949.15 gi|124027050|ref|YP_001012370.1| - 7.3e-23 81.1 0.1 2.9e-21 75.9 0.1 2.3 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|124027050|ref|YP_001012370.1| - 1.3e-20 74.0 0.1 2e-14 53.8 0.2 3.7 2 1 1 3 3 3 2 Malic enzyme, N-terminal domain F420_oxidored PF03807.17 gi|124027050|ref|YP_001012370.1| - 0.049 14.2 3.1 0.086 13.4 0.1 2.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF2433 PF10360.9 gi|124027050|ref|YP_001012370.1| - 0.17 12.0 0.0 0.85 9.7 0.0 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2433) FAD_binding_2 PF00890.24 gi|124027051|ref|YP_001012371.1| - 1.4e-113 380.1 0.1 1.7e-113 379.9 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|124027051|ref|YP_001012371.1| - 1e-41 141.9 0.3 1.6e-41 141.2 0.3 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|124027051|ref|YP_001012371.1| - 1e-05 24.9 0.3 0.00054 19.3 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|124027051|ref|YP_001012371.1| - 0.00016 21.4 0.3 0.0008 19.1 0.0 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|124027051|ref|YP_001012371.1| - 0.00091 18.5 0.2 0.054 12.7 0.1 2.5 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|124027051|ref|YP_001012371.1| - 0.016 13.9 0.5 1.9 7.1 0.2 2.2 2 0 0 2 2 2 0 HI0933-like protein FAD_binding_3 PF01494.19 gi|124027051|ref|YP_001012371.1| - 0.065 12.5 0.2 0.12 11.6 0.2 1.4 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.12 gi|124027051|ref|YP_001012371.1| - 0.084 11.9 0.1 0.14 11.2 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|124027051|ref|YP_001012371.1| - 0.13 12.5 0.3 0.48 10.7 0.3 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|124027051|ref|YP_001012371.1| - 0.25 10.4 4.1 0.13 11.3 0.3 2.3 3 0 0 3 3 3 0 Glucose inhibited division protein A Sdh_cyt PF01127.22 gi|124027052|ref|YP_001012372.1| - 1.4e-17 63.8 0.8 2.4e-17 63.1 0.7 1.4 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.19 gi|124027052|ref|YP_001012372.1| - 3e-05 24.1 3.0 6.4e-05 23.1 3.0 1.7 1 1 0 1 1 1 1 Ferric reductase like transmembrane component TrbC PF04956.13 gi|124027052|ref|YP_001012372.1| - 0.0075 16.5 5.3 0.012 15.8 0.0 2.2 2 0 0 2 2 2 1 TrbC/VIRB2 family PAS_2 PF08446.11 gi|124027052|ref|YP_001012372.1| - 0.12 13.0 0.0 0.26 12.0 0.0 1.5 2 0 0 2 2 2 0 PAS fold DUF4006 PF13179.6 gi|124027052|ref|YP_001012372.1| - 0.39 10.6 0.0 0.39 10.6 0.0 2.0 3 0 0 3 3 3 0 Family of unknown function (DUF4006) Sdh_cyt PF01127.22 gi|124027053|ref|YP_001012373.1| - 1.3e-08 34.9 4.9 1.8e-08 34.4 4.9 1.2 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit UPF0370 PF13980.6 gi|124027053|ref|YP_001012373.1| - 0.028 14.5 0.4 0.028 14.5 0.4 2.0 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0370) DUF373 PF04123.13 gi|124027053|ref|YP_001012373.1| - 0.034 13.6 4.1 0.039 13.4 4.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Spore_YabQ PF09578.10 gi|124027053|ref|YP_001012373.1| - 0.19 11.9 8.7 0.044 14.0 4.8 1.9 2 1 0 2 2 2 0 Spore cortex protein YabQ (Spore_YabQ) DUF4131 PF13567.6 gi|124027053|ref|YP_001012373.1| - 1.3 8.6 6.7 0.82 9.3 4.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF5056 PF16479.5 gi|124027053|ref|YP_001012373.1| - 2.3 8.5 9.7 15 5.9 0.1 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF5056) Fer2_3 PF13085.6 gi|124027054|ref|YP_001012374.1| - 1.8e-37 127.7 0.0 4.1e-37 126.5 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|124027054|ref|YP_001012374.1| - 1.4e-07 31.8 4.3 1.4e-07 31.8 4.3 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|124027054|ref|YP_001012374.1| - 4.1e-07 30.0 4.7 4.1e-07 30.0 4.7 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|124027054|ref|YP_001012374.1| - 1.2e-06 28.9 16.4 3.7e-05 24.2 8.0 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|124027054|ref|YP_001012374.1| - 4.1e-06 27.2 12.6 1.5e-05 25.4 4.3 2.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|124027054|ref|YP_001012374.1| - 9e-06 25.3 1.7 9e-06 25.3 1.7 3.7 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|124027054|ref|YP_001012374.1| - 3.1e-05 23.9 1.7 3.1e-05 23.9 1.7 3.0 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|124027054|ref|YP_001012374.1| - 4.2e-05 23.6 8.5 0.0019 18.3 0.1 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer2 PF00111.27 gi|124027054|ref|YP_001012374.1| - 0.00046 20.1 0.2 0.00046 20.1 0.2 2.3 3 0 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.6 gi|124027054|ref|YP_001012374.1| - 0.00081 19.6 1.0 0.34 11.1 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124027054|ref|YP_001012374.1| - 0.0032 18.4 5.8 0.0032 18.4 5.8 2.2 2 1 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|124027054|ref|YP_001012374.1| - 0.0072 16.8 1.0 0.0072 16.8 1.0 3.1 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|124027054|ref|YP_001012374.1| - 0.011 15.8 0.8 0.011 15.8 0.8 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|124027054|ref|YP_001012374.1| - 0.013 15.6 1.4 0.013 15.6 1.4 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|124027054|ref|YP_001012374.1| - 0.058 14.4 6.0 0.058 14.4 6.0 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|124027054|ref|YP_001012374.1| - 0.22 11.3 6.1 4.4 7.1 1.1 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|124027054|ref|YP_001012374.1| - 0.48 11.3 0.0 0.48 11.3 0.0 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fumerase_C PF05683.12 gi|124027055|ref|YP_001012375.1| - 4.8e-52 176.3 0.0 5.7e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 gi|124027056|ref|YP_001012376.1| - 7.1e-86 288.0 0.0 8.8e-86 287.7 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) SAM_adeno_trans PF01887.16 gi|124027057|ref|YP_001012377.1| - 2.1e-73 246.6 0.0 2.4e-73 246.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase MarR_2 PF12802.7 gi|124027058|ref|YP_001012378.1| - 0.0034 17.2 0.1 0.0057 16.5 0.1 1.4 1 0 0 1 1 1 1 MarR family Ribosomal_S25 PF03297.15 gi|124027058|ref|YP_001012378.1| - 0.14 12.4 0.0 0.16 12.2 0.0 1.1 1 0 0 1 1 1 0 S25 ribosomal protein FeoB_N PF02421.18 gi|124027059|ref|YP_001012379.1| - 7.6e-57 191.2 0.2 1.3e-56 190.5 0.2 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|124027059|ref|YP_001012379.1| - 6.5e-29 100.5 15.5 1.8e-19 70.1 2.5 3.0 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|124027059|ref|YP_001012379.1| - 1.1e-19 70.6 0.0 2.1e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|124027059|ref|YP_001012379.1| - 6.4e-17 61.9 0.0 3.4e-16 59.6 0.0 2.0 2 0 0 2 2 2 1 FeoB cytosolic helical domain FeoB_C PF07664.12 gi|124027059|ref|YP_001012379.1| - 9.9e-14 50.8 1.6 4e-13 48.8 1.6 2.1 1 0 0 1 1 1 1 Ferrous iron transport protein B C terminus RsgA_GTPase PF03193.16 gi|124027059|ref|YP_001012379.1| - 2.8e-07 30.6 1.4 0.0068 16.3 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|124027059|ref|YP_001012379.1| - 2.4e-06 27.2 1.1 0.00014 21.4 1.1 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain PduV-EutP PF10662.9 gi|124027059|ref|YP_001012379.1| - 0.0016 18.2 0.0 0.006 16.3 0.0 2.0 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|124027059|ref|YP_001012379.1| - 0.003 17.0 0.0 0.0061 16.0 0.0 1.4 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|124027059|ref|YP_001012379.1| - 0.0049 16.5 0.0 0.057 13.0 0.0 2.1 1 1 0 1 1 1 1 Ras family AIG1 PF04548.16 gi|124027059|ref|YP_001012379.1| - 0.0084 15.5 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|124027059|ref|YP_001012379.1| - 0.013 15.5 0.1 1 9.4 0.0 2.3 1 1 0 2 2 2 0 Dynamin family ABC_tran PF00005.27 gi|124027059|ref|YP_001012379.1| - 0.055 14.0 0.1 0.32 11.5 0.0 2.0 2 0 0 2 2 2 0 ABC transporter MeaB PF03308.16 gi|124027059|ref|YP_001012379.1| - 0.081 11.9 0.2 9.1 5.2 0.1 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Roc PF08477.13 gi|124027059|ref|YP_001012379.1| - 0.15 12.2 0.0 0.31 11.3 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase NB-ARC PF00931.22 gi|124027059|ref|YP_001012379.1| - 0.25 10.5 0.1 0.41 9.8 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Fe_dep_repr_C PF02742.15 gi|124027060|ref|YP_001012380.1| - 9.6e-23 80.1 0.2 4.6e-22 77.9 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|124027060|ref|YP_001012380.1| - 2.3e-19 69.3 0.7 4.2e-19 68.5 0.7 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|124027060|ref|YP_001012380.1| - 3.8e-07 29.9 0.1 8e-07 28.9 0.1 1.6 1 0 0 1 1 1 1 MarR family FeoA PF04023.14 gi|124027060|ref|YP_001012380.1| - 7.4e-07 29.3 0.5 5.7e-05 23.3 0.1 2.3 2 0 0 2 2 2 1 FeoA domain MarR PF01047.22 gi|124027060|ref|YP_001012380.1| - 1.2e-06 28.4 0.0 2.5e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|124027060|ref|YP_001012380.1| - 8.2e-05 22.5 0.1 0.00019 21.4 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|124027060|ref|YP_001012380.1| - 0.00012 21.9 0.1 0.00055 19.8 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|124027060|ref|YP_001012380.1| - 0.00013 21.7 0.8 0.0011 18.8 0.1 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|124027060|ref|YP_001012380.1| - 0.00023 20.6 0.1 0.00065 19.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|124027060|ref|YP_001012380.1| - 0.00031 20.3 0.2 0.0015 18.1 0.1 2.2 2 1 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|124027060|ref|YP_001012380.1| - 0.0015 19.0 0.1 0.003 18.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|124027060|ref|YP_001012380.1| - 0.0028 17.7 0.0 0.0067 16.5 0.0 1.6 1 0 0 1 1 1 1 DprA winged helix domain Rrf2 PF02082.20 gi|124027060|ref|YP_001012380.1| - 0.0049 17.2 0.1 0.013 15.8 0.1 1.7 2 1 0 2 2 1 1 Transcriptional regulator HTH_36 PF13730.6 gi|124027060|ref|YP_001012380.1| - 0.0065 16.4 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain CobN-Mg_chel PF02514.16 gi|124027060|ref|YP_001012380.1| - 0.01 13.6 0.0 0.012 13.4 0.0 1.1 1 0 0 1 1 1 0 CobN/Magnesium Chelatase HTH_5 PF01022.20 gi|124027060|ref|YP_001012380.1| - 0.019 14.8 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Ribosomal_S19e PF01090.19 gi|124027060|ref|YP_001012380.1| - 0.032 13.9 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e Topoisom_bac PF01131.20 gi|124027060|ref|YP_001012380.1| - 0.04 12.9 0.2 0.051 12.6 0.2 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_23 PF13384.6 gi|124027060|ref|YP_001012380.1| - 0.042 13.7 0.0 0.18 11.7 0.0 2.2 1 1 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.6 gi|124027060|ref|YP_001012380.1| - 0.05 13.4 0.9 0.2 11.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain BLACT_WH PF17778.1 gi|124027060|ref|YP_001012380.1| - 0.066 13.2 0.0 0.49 10.4 0.0 2.4 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain FeoA PF04023.14 gi|124027061|ref|YP_001012381.1| - 1.8e-18 66.6 0.9 2e-18 66.4 0.9 1.0 1 0 0 1 1 1 1 FeoA domain HicA_toxin PF07927.12 gi|124027062|ref|YP_001012382.1| - 0.11 12.5 0.3 0.26 11.4 0.1 1.9 2 1 0 2 2 2 0 HicA toxin of bacterial toxin-antitoxin, Peptidase_M32 PF02074.15 gi|124027063|ref|YP_001012383.1| - 2.8e-159 531.0 0.0 3.4e-159 530.7 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Thioredoxin_4 PF13462.6 gi|124027064|ref|YP_001012384.1| - 4.1e-12 46.6 0.0 6.7e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|124027064|ref|YP_001012384.1| - 1.3e-06 28.3 0.1 0.00048 20.0 0.1 2.7 2 1 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 gi|124027064|ref|YP_001012384.1| - 2.1e-05 24.9 0.0 0.00041 20.8 0.0 2.5 1 1 0 1 1 1 1 Thioredoxin-like domain DAP_epimerase PF01678.19 gi|124027064|ref|YP_001012384.1| - 0.1 12.8 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Diaminopimelate epimerase DUF2946 PF11162.8 gi|124027064|ref|YP_001012384.1| - 0.14 12.8 0.0 23 5.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2946) Spc7 PF08317.11 gi|124027065|ref|YP_001012385.1| - 0.002 17.1 1.0 0.002 17.1 1.0 1.5 2 0 0 2 2 2 1 Spc7 kinetochore protein HSBP1 PF06825.12 gi|124027065|ref|YP_001012385.1| - 0.0031 17.3 0.8 0.013 15.3 0.3 2.3 2 0 0 2 2 2 1 Heat shock factor binding protein 1 EzrA PF06160.12 gi|124027065|ref|YP_001012385.1| - 0.0054 15.0 2.0 0.007 14.6 0.3 1.7 2 0 0 2 2 2 1 Septation ring formation regulator, EzrA FUSC PF04632.12 gi|124027065|ref|YP_001012385.1| - 0.0075 14.9 2.8 0.0086 14.7 2.8 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein family Filament PF00038.21 gi|124027065|ref|YP_001012385.1| - 0.0088 15.7 0.8 0.0088 15.7 0.8 1.5 2 0 0 2 2 2 1 Intermediate filament protein Rsa3 PF14615.6 gi|124027065|ref|YP_001012385.1| - 0.011 15.2 1.3 2.9 7.5 0.1 2.4 2 0 0 2 2 2 0 Ribosome-assembly protein 3 HBM PF16591.5 gi|124027065|ref|YP_001012385.1| - 0.024 14.1 0.7 0.31 10.4 0.5 2.1 2 0 0 2 2 2 0 Helical bimodular sensor domain SlyX PF04102.12 gi|124027065|ref|YP_001012385.1| - 0.039 14.6 2.6 0.039 14.6 2.6 2.4 3 0 0 3 3 3 0 SlyX DUF2937 PF11157.8 gi|124027065|ref|YP_001012385.1| - 0.058 13.1 0.3 0.14 11.9 0.1 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2937) ParE_toxin PF05016.15 gi|124027065|ref|YP_001012385.1| - 0.062 13.9 1.5 2 9.1 0.0 3.2 2 1 1 3 3 3 0 ParE toxin of type II toxin-antitoxin system, parDE RP1-2 PF12042.8 gi|124027065|ref|YP_001012385.1| - 0.067 13.1 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Tubuliform egg casing silk strands structural domain ORF6C PF10552.9 gi|124027065|ref|YP_001012385.1| - 0.075 13.1 1.2 0.11 12.5 0.2 1.7 2 0 0 2 2 2 0 ORF6C domain ABC_tran_CTD PF16326.5 gi|124027065|ref|YP_001012385.1| - 0.079 13.2 0.5 0.079 13.2 0.5 2.8 3 0 0 3 3 3 0 ABC transporter C-terminal domain XhlA PF10779.9 gi|124027065|ref|YP_001012385.1| - 0.12 12.7 1.9 0.12 12.6 0.6 1.7 2 0 0 2 2 1 0 Haemolysin XhlA CorA PF01544.18 gi|124027065|ref|YP_001012385.1| - 0.16 11.2 1.5 0.26 10.6 1.5 1.5 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF16 PF01519.16 gi|124027065|ref|YP_001012385.1| - 0.18 12.3 0.9 0.38 11.3 0.1 1.9 3 0 0 3 3 2 0 Protein of unknown function DUF16 Exonuc_VII_L PF02601.15 gi|124027065|ref|YP_001012385.1| - 0.19 11.2 0.9 0.25 10.9 0.9 1.3 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF4795 PF16043.5 gi|124027065|ref|YP_001012385.1| - 0.23 11.1 1.2 0.23 11.0 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Matrilin_ccoil PF10393.9 gi|124027065|ref|YP_001012385.1| - 0.27 11.1 1.6 0.49 10.3 0.2 2.3 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Prominin PF05478.11 gi|124027065|ref|YP_001012385.1| - 0.32 8.9 0.1 0.43 8.5 0.1 1.2 1 0 0 1 1 1 0 Prominin FlgN PF05130.12 gi|124027065|ref|YP_001012385.1| - 1.5 9.3 8.0 0.45 11.0 5.2 1.5 2 0 0 2 2 1 0 FlgN protein NUDIX PF00293.28 gi|124027066|ref|YP_001012386.1| - 7.4e-21 74.6 3.6 1e-20 74.1 3.6 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|124027066|ref|YP_001012386.1| - 0.049 13.6 0.8 0.15 12.1 0.8 1.8 1 1 0 1 1 1 0 NUDIX domain RuvB_N PF05496.12 gi|124027067|ref|YP_001012387.1| - 0.085 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Peripla_BP_2 PF01497.18 gi|124027068|ref|YP_001012388.1| - 9.7e-35 120.2 0.0 1.2e-34 119.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein EpuA PF11772.8 gi|124027068|ref|YP_001012388.1| - 0.0019 17.8 4.7 0.0048 16.5 4.7 1.7 1 0 0 1 1 1 1 DNA-directed RNA polymerase subunit beta Glyco_tran_WecB PF03808.13 gi|124027068|ref|YP_001012388.1| - 0.094 12.7 0.0 0.63 10.0 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family FecCD PF01032.18 gi|124027069|ref|YP_001012389.1| - 2.4e-66 223.9 41.4 2.9e-66 223.6 41.4 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|124027070|ref|YP_001012390.1| - 1e-08 35.8 0.1 1.3e-08 35.5 0.1 1.1 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|124027070|ref|YP_001012390.1| - 4.1e-07 30.7 0.0 4.2e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|124027070|ref|YP_001012390.1| - 0.00013 21.8 0.2 0.00018 21.4 0.2 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 gi|124027070|ref|YP_001012390.1| - 0.00017 21.3 0.0 0.00018 21.2 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|124027070|ref|YP_001012390.1| - 0.00029 20.5 0.5 0.00067 19.3 0.3 1.6 1 1 1 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|124027070|ref|YP_001012390.1| - 0.00073 19.5 0.0 0.00078 19.4 0.0 1.0 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|124027070|ref|YP_001012390.1| - 0.0018 18.1 0.1 0.0023 17.7 0.1 1.0 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|124027070|ref|YP_001012390.1| - 0.0037 17.0 0.0 0.0045 16.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|124027070|ref|YP_001012390.1| - 0.0048 16.5 0.1 0.0063 16.1 0.1 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|124027070|ref|YP_001012390.1| - 0.0068 16.7 0.0 0.0076 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|124027070|ref|YP_001012390.1| - 0.0097 15.8 0.0 0.0098 15.8 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea SMC_N PF02463.19 gi|124027070|ref|YP_001012390.1| - 0.012 15.1 0.0 0.012 15.1 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DLIC PF05783.11 gi|124027070|ref|YP_001012390.1| - 0.018 13.9 0.1 0.02 13.7 0.1 1.0 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_16 PF13191.6 gi|124027070|ref|YP_001012390.1| - 0.021 15.2 0.0 0.024 15.0 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 gi|124027070|ref|YP_001012390.1| - 0.022 14.8 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|124027070|ref|YP_001012390.1| - 0.029 14.0 0.0 0.03 13.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|124027070|ref|YP_001012390.1| - 0.029 14.3 0.1 0.035 14.0 0.1 1.2 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|124027070|ref|YP_001012390.1| - 0.048 13.4 0.1 0.058 13.1 0.1 1.1 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|124027070|ref|YP_001012390.1| - 0.06 13.6 0.0 0.07 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|124027070|ref|YP_001012390.1| - 0.086 13.0 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|124027070|ref|YP_001012390.1| - 0.087 11.6 0.0 0.087 11.6 0.0 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_13 PF13166.6 gi|124027070|ref|YP_001012390.1| - 0.092 11.4 0.1 0.092 11.4 0.1 1.0 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|124027070|ref|YP_001012390.1| - 0.098 12.7 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|124027070|ref|YP_001012390.1| - 0.099 12.1 0.0 0.099 12.1 0.0 1.1 1 0 0 1 1 1 0 P-loop containing dynein motor region Arf PF00025.21 gi|124027070|ref|YP_001012390.1| - 0.1 12.0 0.1 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 ADP-ribosylation factor family DUF3584 PF12128.8 gi|124027070|ref|YP_001012390.1| - 0.14 9.6 0.1 0.15 9.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) PEPCK_ATP PF01293.20 gi|124027070|ref|YP_001012390.1| - 0.15 10.7 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Rad17 PF03215.15 gi|124027070|ref|YP_001012390.1| - 0.16 11.9 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 P-loop domain Roc PF08477.13 gi|124027070|ref|YP_001012390.1| - 0.16 12.2 0.0 0.22 11.7 0.0 1.2 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 gi|124027071|ref|YP_001012391.1| - 2.4e-10 41.0 0.0 3.9e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027071|ref|YP_001012391.1| - 0.0017 18.2 0.0 0.0018 18.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system Robl_LC7 PF03259.17 gi|124027072|ref|YP_001012392.1| - 7.4e-11 41.7 0.1 9e-11 41.4 0.1 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|124027072|ref|YP_001012392.1| - 5e-07 29.5 0.0 5.5e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting HHH PF00633.23 gi|124027073|ref|YP_001012393.1| - 1.6e-05 24.5 0.0 3.1e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|124027073|ref|YP_001012393.1| - 0.0067 17.0 0.0 0.013 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|124027073|ref|YP_001012393.1| - 0.085 13.2 0.1 0.96 9.9 0.1 2.3 1 1 0 1 1 1 0 Helix-hairpin-helix domain Radical_SAM PF04055.21 gi|124027074|ref|YP_001012394.1| - 3.7e-23 82.7 0.0 5.7e-23 82.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|124027074|ref|YP_001012394.1| - 9.2e-09 35.7 0.0 1.3e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|124027074|ref|YP_001012394.1| - 0.00022 21.3 0.0 0.00034 20.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain ANTAR PF03861.14 gi|124027074|ref|YP_001012394.1| - 0.038 13.8 0.9 0.54 10.1 0.3 2.4 2 0 0 2 2 2 0 ANTAR domain RHH_3 PF12651.7 gi|124027074|ref|YP_001012394.1| - 0.099 12.6 0.1 0.22 11.5 0.1 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix domain PTPS PF01242.19 gi|124027075|ref|YP_001012395.1| - 2.4e-21 76.0 0.1 3e-21 75.7 0.1 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase NMD3 PF04981.13 gi|124027075|ref|YP_001012395.1| - 0.0015 18.1 0.0 0.0019 17.7 0.0 1.1 1 0 0 1 1 1 1 NMD3 family NRho PF16733.5 gi|124027075|ref|YP_001012395.1| - 0.073 13.1 0.4 0.88 9.7 0.4 2.1 1 1 0 1 1 1 0 Rhomboid N-terminal domain Fer4_14 PF13394.6 gi|124027076|ref|YP_001012396.1| - 3.2e-16 59.5 0.0 4.9e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|124027076|ref|YP_001012396.1| - 1.8e-14 54.5 0.0 7.2e-14 52.5 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|124027076|ref|YP_001012396.1| - 2.9e-12 47.0 0.0 5.2e-12 46.2 0.0 1.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain EPSP_synthase PF00275.20 gi|124027076|ref|YP_001012396.1| - 0.014 14.1 0.0 0.02 13.6 0.0 1.1 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Pyr_redox_2 PF07992.14 gi|124027077|ref|YP_001012397.1| - 6e-36 124.2 1.9 7.6e-36 123.8 1.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|124027077|ref|YP_001012397.1| - 1.7e-19 70.2 0.0 1.4e-14 54.1 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|124027077|ref|YP_001012397.1| - 1.8e-11 43.8 9.2 8.7e-07 28.4 4.0 4.0 2 2 2 4 4 4 2 FAD binding domain DAO PF01266.24 gi|124027077|ref|YP_001012397.1| - 3.3e-10 40.1 2.2 9.9e-07 28.6 1.5 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|124027077|ref|YP_001012397.1| - 4.1e-10 40.1 3.1 0.00033 21.2 1.0 3.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|124027077|ref|YP_001012397.1| - 2.2e-09 37.1 1.9 1.5e-08 34.3 1.9 2.1 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|124027077|ref|YP_001012397.1| - 5.9e-09 36.0 0.6 3.2e-08 33.7 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|124027077|ref|YP_001012397.1| - 2.5e-08 33.7 1.9 3.4e-06 26.7 0.8 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|124027077|ref|YP_001012397.1| - 1.6e-07 30.4 0.5 0.0027 16.5 0.7 2.9 3 0 0 3 3 3 2 HI0933-like protein Thi4 PF01946.17 gi|124027077|ref|YP_001012397.1| - 1e-06 28.2 2.0 2e-06 27.2 0.3 2.2 2 1 1 3 3 3 1 Thi4 family GIDA PF01134.22 gi|124027077|ref|YP_001012397.1| - 2e-06 27.2 1.9 1.3e-05 24.5 0.2 3.0 4 0 0 4 4 4 1 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|124027077|ref|YP_001012397.1| - 0.00062 19.0 0.0 6.6 5.8 0.0 3.1 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|124027077|ref|YP_001012397.1| - 0.0018 18.7 0.4 0.063 13.7 0.1 2.4 2 1 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|124027077|ref|YP_001012397.1| - 0.002 17.5 0.2 2.6 7.4 0.2 2.5 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|124027077|ref|YP_001012397.1| - 0.0025 17.9 0.3 0.0078 16.3 0.1 1.9 2 0 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.12 gi|124027077|ref|YP_001012397.1| - 0.0059 15.7 0.9 0.016 14.3 0.9 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|124027077|ref|YP_001012397.1| - 0.0077 15.5 3.6 0.027 13.8 1.2 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|124027077|ref|YP_001012397.1| - 0.0098 14.8 0.7 0.016 14.1 0.7 1.3 1 0 0 1 1 1 1 Tryptophan halogenase Amino_oxidase PF01593.24 gi|124027077|ref|YP_001012397.1| - 0.013 14.9 0.1 0.12 11.6 0.2 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|124027077|ref|YP_001012397.1| - 0.031 14.3 7.1 1.2 9.1 0.0 3.3 4 0 0 4 4 4 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|124027077|ref|YP_001012397.1| - 0.032 13.8 0.9 0.12 11.9 0.1 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MCRA PF06100.11 gi|124027077|ref|YP_001012397.1| - 0.039 12.7 0.2 0.066 12.0 0.2 1.3 1 0 0 1 1 1 0 MCRA family IlvN PF07991.12 gi|124027077|ref|YP_001012397.1| - 0.078 12.6 0.3 1.4 8.5 0.1 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|124027077|ref|YP_001012397.1| - 0.096 12.3 1.1 0.2 11.3 1.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|124027077|ref|YP_001012397.1| - 0.16 12.2 1.0 3.8 7.8 0.2 2.9 2 1 1 3 3 3 0 TrkA-N domain 3HCDH_N PF02737.18 gi|124027077|ref|YP_001012397.1| - 0.19 11.6 0.4 0.38 10.6 0.4 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.21 gi|124027077|ref|YP_001012397.1| - 1.7 8.0 3.4 0.84 8.9 0.4 1.8 2 0 0 2 2 2 0 ThiF family GCV_H PF01597.19 gi|124027078|ref|YP_001012398.1| - 2.5e-48 163.0 0.5 3e-48 162.7 0.5 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|124027078|ref|YP_001012398.1| - 1.3e-05 25.1 0.0 2.2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|124027078|ref|YP_001012398.1| - 2.4e-05 24.1 0.7 5e-05 23.0 0.1 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme HlyD_3 PF13437.6 gi|124027078|ref|YP_001012398.1| - 0.051 14.3 0.2 6.3 7.6 0.1 2.4 1 1 1 2 2 2 0 HlyD family secretion protein Oxidored_q4 PF00507.19 gi|124027079|ref|YP_001012399.1| - 0.00031 20.9 1.5 0.00031 20.9 1.5 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Oxidored_q6 PF01058.22 gi|124027080|ref|YP_001012400.1| - 2.2e-23 82.5 0.0 3.2e-23 82.0 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|124027081|ref|YP_001012401.1| - 7.7e-34 116.9 0.1 9.4e-34 116.7 0.1 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CRM1_repeat PF18777.1 gi|124027081|ref|YP_001012401.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Chromosome region maintenance or exportin repeat Complex1_49kDa PF00346.19 gi|124027082|ref|YP_001012402.1| - 5.1e-81 271.7 0.0 1.3e-80 270.4 0.0 1.6 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NADHdh PF00146.21 gi|124027083|ref|YP_001012403.1| - 5.2e-60 203.3 21.6 5.9e-60 203.1 21.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF4713 PF15831.5 gi|124027083|ref|YP_001012403.1| - 0.69 10.4 3.5 3.1 8.3 1.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4713) Fer4 PF00037.27 gi|124027084|ref|YP_001012404.1| - 9.9e-16 56.8 13.6 3.7e-08 32.9 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|124027084|ref|YP_001012404.1| - 1e-10 41.0 9.4 1.1e-05 25.2 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|124027084|ref|YP_001012404.1| - 1.7e-10 41.3 7.5 3.1e-10 40.5 7.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|124027084|ref|YP_001012404.1| - 2.3e-10 40.4 16.8 6.4e-08 32.6 9.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124027084|ref|YP_001012404.1| - 4.4e-10 39.2 11.9 7.1e-06 25.9 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|124027084|ref|YP_001012404.1| - 5.7e-10 40.0 4.4 0.00028 21.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|124027084|ref|YP_001012404.1| - 8.7e-10 38.6 6.5 1.4e-09 37.9 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|124027084|ref|YP_001012404.1| - 9.6e-08 32.4 4.3 0.0026 18.1 0.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124027084|ref|YP_001012404.1| - 1.7e-07 31.2 11.5 1.6e-06 28.2 11.6 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124027084|ref|YP_001012404.1| - 2.1e-06 27.8 9.3 0.0047 17.3 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|124027084|ref|YP_001012404.1| - 1.7e-05 25.4 14.0 0.018 15.9 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|124027084|ref|YP_001012404.1| - 3.4e-05 24.3 7.8 0.053 14.1 1.2 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|124027084|ref|YP_001012404.1| - 3.6e-05 24.4 5.4 0.0096 16.6 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|124027084|ref|YP_001012404.1| - 0.0012 19.7 7.3 0.2 12.5 0.1 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|124027084|ref|YP_001012404.1| - 0.0067 17.0 13.1 0.11 13.0 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|124027084|ref|YP_001012404.1| - 0.025 14.7 9.6 0.25 11.5 0.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.20 gi|124027085|ref|YP_001012405.1| - 2.5e-11 43.5 16.6 3.7e-11 42.9 16.6 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF554 PF04474.12 gi|124027085|ref|YP_001012405.1| - 0.0082 15.6 6.5 0.0082 15.6 6.5 2.0 2 1 1 3 3 3 2 Protein of unknown function (DUF554) Oxidored_q2 PF00420.24 gi|124027086|ref|YP_001012406.1| - 5.7e-09 35.6 12.8 1.2e-08 34.5 12.8 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AftA_N PF12250.8 gi|124027086|ref|YP_001012406.1| - 0.0016 17.3 8.6 0.0017 17.2 8.6 1.0 1 0 0 1 1 1 1 Arabinofuranosyltransferase N terminal TMEM132D_C PF15706.5 gi|124027086|ref|YP_001012406.1| - 0.13 12.1 0.4 0.22 11.3 0.4 1.4 1 0 0 1 1 1 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term Sec61_beta PF03911.16 gi|124027086|ref|YP_001012406.1| - 0.19 11.8 5.2 0.61 10.2 5.2 1.9 1 0 0 1 1 1 0 Sec61beta family Proton_antipo_M PF00361.20 gi|124027087|ref|YP_001012407.1| - 2.9e-53 181.0 25.4 2.9e-53 181.0 25.4 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|124027087|ref|YP_001012407.1| - 8.6e-06 25.7 0.8 8.6e-06 25.7 0.8 2.6 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|124027088|ref|YP_001012408.1| - 1.1e-53 182.4 34.7 3.3e-49 167.7 32.3 2.7 2 0 0 2 2 2 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|124027088|ref|YP_001012408.1| - 1.7e-07 31.2 5.1 2e-07 30.9 2.9 2.4 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.11 gi|124027088|ref|YP_001012408.1| - 0.00058 19.5 0.0 0.00058 19.5 0.0 3.9 4 1 0 4 4 4 1 NADH dehydrogenase subunit 5 C-terminus Proton_antipo_M PF00361.20 gi|124027089|ref|YP_001012409.1| - 2.2e-42 145.3 24.4 5.1e-42 144.1 24.4 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter NAD_binding_2 PF03446.15 gi|124027090|ref|YP_001012410.1| - 3.5e-24 85.7 1.2 5.8e-24 85.0 0.2 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|124027090|ref|YP_001012410.1| - 4.1e-11 43.2 0.1 8e-11 42.2 0.1 1.5 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|124027090|ref|YP_001012410.1| - 6.1e-08 33.2 0.2 1.5e-06 28.7 0.1 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|124027090|ref|YP_001012410.1| - 1.2e-07 31.9 0.0 2e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|124027090|ref|YP_001012410.1| - 7e-06 26.3 0.4 0.0013 19.0 0.3 3.0 2 1 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|124027090|ref|YP_001012410.1| - 9.7e-05 21.8 0.1 0.00027 20.3 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|124027090|ref|YP_001012410.1| - 0.0001 21.9 0.0 0.00036 20.1 0.0 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|124027090|ref|YP_001012410.1| - 0.00045 20.2 0.1 0.00076 19.4 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|124027090|ref|YP_001012410.1| - 0.00064 19.7 0.0 0.0024 17.8 0.0 1.9 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sacchrp_dh_NADP PF03435.18 gi|124027090|ref|YP_001012410.1| - 0.00082 19.6 0.0 0.0014 18.9 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|124027090|ref|YP_001012410.1| - 0.0025 17.5 0.0 0.0043 16.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA adh_short_C2 PF13561.6 gi|124027090|ref|YP_001012410.1| - 0.026 14.1 0.1 0.059 12.9 0.1 1.5 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase GFO_IDH_MocA PF01408.22 gi|124027090|ref|YP_001012410.1| - 0.027 15.3 0.0 0.052 14.4 0.0 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold adh_short PF00106.25 gi|124027090|ref|YP_001012410.1| - 0.038 13.4 0.4 0.083 12.3 0.1 1.7 2 0 0 2 2 2 0 short chain dehydrogenase Cytochrome_cB PF11783.8 gi|124027091|ref|YP_001012411.1| - 3.5e-25 88.9 0.0 3.5e-25 88.9 0.0 4.1 5 0 0 5 5 5 1 Cytochrome c bacterial Cytochrome_C7 PF14522.6 gi|124027091|ref|YP_001012411.1| - 9.9e-12 44.7 15.8 7.3e-05 22.7 7.2 4.9 4 1 0 4 4 4 3 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|124027091|ref|YP_001012411.1| - 8e-05 23.0 25.6 0.062 13.8 9.6 5.6 5 1 0 5 5 5 2 Cytochrome c3 Paired_CXXCH_1 PF09699.10 gi|124027091|ref|YP_001012411.1| - 0.00051 19.7 36.0 2.8 7.8 0.2 6.8 5 1 2 7 7 7 3 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_CIII PF02085.16 gi|124027091|ref|YP_001012411.1| - 0.025 14.9 23.1 1.2 9.5 13.3 4.9 4 1 1 5 5 5 0 Class III cytochrome C family Cytochrome_C554 PF13435.6 gi|124027091|ref|YP_001012411.1| - 0.028 15.3 27.0 8.2 7.4 3.2 6.1 4 2 1 5 5 5 0 Cytochrome c554 and c-prime DUF4307 PF14155.6 gi|124027091|ref|YP_001012411.1| - 0.066 13.0 1.4 0.57 10.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) Cytochrome_CBB3 PF13442.6 gi|124027091|ref|YP_001012411.1| - 0.98 9.8 31.0 2.1 8.7 0.1 8.0 3 1 4 8 8 8 0 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_NNT PF03264.14 gi|124027091|ref|YP_001012411.1| - 2.7 7.7 27.8 7.7 6.2 0.3 6.0 4 1 2 6 6 6 0 NapC/NirT cytochrome c family, N-terminal region Macro PF01661.21 gi|124027093|ref|YP_001012413.1| - 7e-26 90.6 0.0 1.5e-25 89.5 0.0 1.5 2 0 0 2 2 2 1 Macro domain Macro_2 PF14519.6 gi|124027093|ref|YP_001012413.1| - 0.04 13.3 0.0 0.44 9.8 0.0 2.1 1 1 0 1 1 1 0 Macro-like domain PaREP1 PF05942.11 gi|124027094|ref|YP_001012414.1| - 0.014 15.4 0.2 0.031 14.2 0.2 1.8 1 1 0 1 1 1 0 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|124027094|ref|YP_001012414.1| - 0.026 14.6 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 HEPN domain IncE PF17627.2 gi|124027095|ref|YP_001012415.1| - 0.076 13.0 0.3 0.13 12.3 0.3 1.4 1 0 0 1 1 1 0 Inclusion membrane protein E EamA PF00892.20 gi|124027096|ref|YP_001012416.1| - 2.7e-22 79.4 34.8 8.7e-16 58.3 13.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family CoA_binding PF02629.19 gi|124027099|ref|YP_001012419.1| - 2.7e-31 108.1 0.8 6.1e-31 107.0 0.3 1.8 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|124027099|ref|YP_001012419.1| - 1.4e-17 63.9 0.2 3.3e-17 62.7 0.0 1.7 2 1 0 2 2 2 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|124027099|ref|YP_001012419.1| - 3.9e-15 55.8 0.0 1.1e-14 54.5 0.0 1.7 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|124027099|ref|YP_001012419.1| - 1.1e-09 38.8 0.1 3.5e-09 37.2 0.0 1.9 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|124027099|ref|YP_001012419.1| - 0.03 15.1 0.0 0.092 13.6 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|124027099|ref|YP_001012419.1| - 0.087 13.0 0.1 0.19 11.9 0.1 1.7 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ATP-grasp_2 PF08442.10 gi|124027100|ref|YP_001012420.1| - 4.2e-54 183.2 0.0 7.4e-54 182.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|124027100|ref|YP_001012420.1| - 2.9e-17 62.9 0.0 5e-17 62.1 0.0 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|124027100|ref|YP_001012420.1| - 0.0034 16.9 0.1 0.015 14.8 0.1 2.2 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|124027100|ref|YP_001012420.1| - 0.036 13.8 0.0 0.058 13.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RHH_1 PF01402.21 gi|124027101|ref|YP_001012421.1| - 4.9e-11 42.2 0.1 1.3e-10 40.8 0.1 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|124027101|ref|YP_001012421.1| - 8.6e-09 35.4 0.0 1.2e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain HicB_lk_antitox PF15919.5 gi|124027101|ref|YP_001012421.1| - 0.00074 19.6 0.0 0.0025 17.9 0.0 1.9 2 1 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system VapB_antitoxin PF09957.9 gi|124027101|ref|YP_001012421.1| - 0.0014 18.5 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB RHH_8 PF17723.1 gi|124027101|ref|YP_001012421.1| - 0.026 14.7 0.1 0.078 13.2 0.0 1.8 1 1 1 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family DUF1160 PF06648.11 gi|124027101|ref|YP_001012421.1| - 0.045 13.7 0.1 0.057 13.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1160) RHH_3 PF12651.7 gi|124027101|ref|YP_001012421.1| - 0.089 12.8 2.0 0.44 10.6 2.0 2.1 1 1 0 1 1 1 0 Ribbon-helix-helix domain DUF1211 PF06736.11 gi|124027101|ref|YP_001012421.1| - 0.13 12.7 0.4 0.22 12.0 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1211) Hydrolase PF00702.26 gi|124027102|ref|YP_001012422.1| - 5.8e-31 108.4 0.2 8.6e-31 107.9 0.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|124027102|ref|YP_001012422.1| - 9.2e-25 87.2 0.0 9.2e-25 87.2 0.0 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase_3 PF08282.12 gi|124027102|ref|YP_001012422.1| - 5.2e-07 29.7 0.1 0.012 15.4 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase FKBP_C PF00254.28 gi|124027102|ref|YP_001012422.1| - 0.0082 16.4 0.0 0.76 10.1 0.0 2.3 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase HAD PF12710.7 gi|124027102|ref|YP_001012422.1| - 0.0089 16.4 0.2 0.021 15.2 0.2 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CCT_2 PF09425.10 gi|124027102|ref|YP_001012422.1| - 0.022 14.7 0.6 0.065 13.1 0.6 1.9 1 0 0 1 1 1 0 Divergent CCT motif LAL_C2 PF18603.1 gi|124027102|ref|YP_001012422.1| - 0.025 14.8 0.2 0.082 13.1 0.2 1.9 1 0 0 1 1 1 0 L-amino acid ligase C-terminal domain 2 HAD_2 PF13419.6 gi|124027102|ref|YP_001012422.1| - 0.17 11.9 0.1 6.2 6.9 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase GlutR_N PF05201.15 gi|124027103|ref|YP_001012423.1| - 3.2e-35 121.0 0.0 6.3e-35 120.1 0.0 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|124027103|ref|YP_001012423.1| - 2.6e-22 79.4 0.5 5e-22 78.4 0.5 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|124027103|ref|YP_001012423.1| - 9.8e-11 42.0 0.8 1.9e-10 41.0 0.8 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|124027103|ref|YP_001012423.1| - 6.3e-05 23.5 0.4 6.3e-05 23.5 0.4 2.7 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|124027103|ref|YP_001012423.1| - 0.00093 18.6 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|124027103|ref|YP_001012423.1| - 0.0076 15.2 0.2 0.011 14.7 0.2 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family THF_DHG_CYH_C PF02882.19 gi|124027103|ref|YP_001012423.1| - 0.0083 15.5 2.7 0.066 12.5 1.0 2.5 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AdoHcyase_NAD PF00670.21 gi|124027103|ref|YP_001012423.1| - 0.011 15.8 0.1 0.02 14.9 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|124027103|ref|YP_001012423.1| - 0.024 14.9 0.1 0.053 13.8 0.1 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|124027103|ref|YP_001012423.1| - 0.032 14.7 0.1 0.088 13.3 0.1 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding LVIVD PF08309.11 gi|124027103|ref|YP_001012423.1| - 0.052 12.9 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 LVIVD repeat DAHP_snth_FXD PF18152.1 gi|124027103|ref|YP_001012423.1| - 0.056 13.3 0.0 1.5 8.7 0.0 2.7 2 0 0 2 2 2 0 DAHP synthase ferredoxin-like domain DUF4226 PF10774.9 gi|124027103|ref|YP_001012423.1| - 0.16 12.3 1.0 3.4 8.0 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) AlaDh_PNT_C PF01262.21 gi|124027103|ref|YP_001012423.1| - 0.34 10.2 3.3 0.62 9.3 3.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HTH_10 PF04967.12 gi|124027104|ref|YP_001012424.1| - 4.8e-18 64.7 0.7 8.6e-18 63.9 0.7 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|124027104|ref|YP_001012424.1| - 0.034 13.7 0.1 0.074 12.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GP3_package PF16677.5 gi|124027104|ref|YP_001012424.1| - 0.052 13.7 0.0 0.081 13.1 0.0 1.3 1 0 0 1 1 1 0 DNA-packaging protein gp3 MarR_2 PF12802.7 gi|124027104|ref|YP_001012424.1| - 0.079 12.9 1.4 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 MarR family DUF2795 PF11387.8 gi|124027105|ref|YP_001012425.1| - 3.3e-11 43.2 2.6 0.00016 21.8 0.0 3.5 4 1 0 4 4 4 2 Protein of unknown function (DUF2795) DUF724 PF05266.14 gi|124027105|ref|YP_001012425.1| - 0.0027 17.5 0.1 0.94 9.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF724) Linocin_M18 PF04454.12 gi|124027105|ref|YP_001012425.1| - 0.0078 15.5 0.0 2.3 7.4 0.0 2.1 2 0 0 2 2 2 2 Encapsulating protein for peroxidase CRR7 PF12095.8 gi|124027105|ref|YP_001012425.1| - 0.0087 16.5 1.1 3 8.4 0.1 2.9 3 1 0 3 3 3 2 Protein CHLORORESPIRATORY REDUCTION 7 Terminase_4 PF05119.12 gi|124027105|ref|YP_001012425.1| - 0.041 14.3 0.0 7.8 7.0 0.0 2.2 1 1 1 2 2 2 0 Phage terminase, small subunit DUF1955 PF09205.10 gi|124027105|ref|YP_001012425.1| - 0.045 13.5 0.0 7.6 6.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1955) MerR PF00376.23 gi|124027105|ref|YP_001012425.1| - 0.058 13.2 0.3 11 5.8 0.1 2.4 2 0 0 2 2 2 0 MerR family regulatory protein Rop PF01815.16 gi|124027105|ref|YP_001012425.1| - 0.72 9.8 2.7 3.3 7.6 0.2 2.5 3 0 0 3 3 3 0 Rop protein ATPase PF06745.13 gi|124027107|ref|YP_001012427.1| - 2.2e-57 194.0 0.0 7.5e-55 185.8 0.0 2.3 2 1 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|124027107|ref|YP_001012427.1| - 5.3e-07 29.4 0.0 1.1e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|124027107|ref|YP_001012427.1| - 0.00021 20.7 0.4 0.00048 19.5 0.0 1.9 2 1 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|124027107|ref|YP_001012427.1| - 0.00049 20.5 0.0 0.0012 19.2 0.0 1.6 2 0 0 2 2 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|124027107|ref|YP_001012427.1| - 0.00096 18.9 0.0 0.0033 17.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain GvpD PF07088.11 gi|124027107|ref|YP_001012427.1| - 0.0011 17.7 0.1 0.0043 15.7 0.0 1.9 1 1 1 2 2 2 1 GvpD gas vesicle protein AAA_14 PF13173.6 gi|124027107|ref|YP_001012427.1| - 0.0033 17.4 0.0 0.011 15.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|124027107|ref|YP_001012427.1| - 0.0037 17.7 0.0 0.13 12.7 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|124027107|ref|YP_001012427.1| - 0.0039 16.9 0.0 0.0065 16.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein RecA PF00154.21 gi|124027107|ref|YP_001012427.1| - 0.0044 16.5 0.0 0.007 15.9 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_18 PF13238.6 gi|124027107|ref|YP_001012427.1| - 0.008 16.7 0.0 0.02 15.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|124027107|ref|YP_001012427.1| - 0.0082 16.1 0.0 0.15 12.0 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_10 PF12846.7 gi|124027107|ref|YP_001012427.1| - 0.014 14.4 0.0 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.6 gi|124027107|ref|YP_001012427.1| - 0.016 15.5 0.0 0.087 13.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|124027107|ref|YP_001012427.1| - 0.018 14.0 0.0 0.037 13.0 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Rad51 PF08423.11 gi|124027107|ref|YP_001012427.1| - 0.03 13.6 0.0 0.13 11.5 0.0 1.8 2 0 0 2 2 2 0 Rad51 AAA_33 PF13671.6 gi|124027107|ref|YP_001012427.1| - 0.047 13.8 0.0 0.084 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain CobA_CobO_BtuR PF02572.15 gi|124027107|ref|YP_001012427.1| - 0.15 12.3 0.0 0.22 11.8 0.0 1.2 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Sigma54_activat PF00158.26 gi|124027107|ref|YP_001012427.1| - 0.17 11.6 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|124027107|ref|YP_001012427.1| - 0.18 11.1 0.0 0.3 10.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.9 gi|124027107|ref|YP_001012427.1| - 0.19 10.9 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.6 gi|124027107|ref|YP_001012427.1| - 0.22 11.3 0.1 0.55 10.0 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSF PF00482.23 gi|124027108|ref|YP_001012428.1| - 9.6e-08 32.0 2.5 9.6e-08 32.0 2.5 2.5 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F T2SSF PF00482.23 gi|124027109|ref|YP_001012429.1| - 4.9e-15 55.6 2.5 4.9e-15 55.6 2.5 3.9 5 0 0 5 5 5 1 Type II secretion system (T2SS), protein F PSK_trans_fac PF07704.11 gi|124027109|ref|YP_001012429.1| - 0.58 10.9 1.9 0.93 10.3 0.1 2.0 2 0 0 2 2 2 0 Rv0623-like transcription factor T2SSE PF00437.20 gi|124027110|ref|YP_001012430.1| - 4e-48 163.8 0.0 5.7e-48 163.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|124027110|ref|YP_001012430.1| - 3.9e-05 23.3 0.0 9.9e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|124027110|ref|YP_001012430.1| - 0.00012 22.6 0.0 0.00025 21.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|124027110|ref|YP_001012430.1| - 0.00015 22.2 0.0 0.00041 20.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|124027110|ref|YP_001012430.1| - 0.00024 21.4 0.0 0.0023 18.2 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.6 gi|124027110|ref|YP_001012430.1| - 0.00078 20.0 0.0 0.0014 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|124027110|ref|YP_001012430.1| - 0.0023 17.9 0.0 0.0041 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|124027110|ref|YP_001012430.1| - 0.0037 17.8 0.0 0.0088 16.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|124027110|ref|YP_001012430.1| - 0.0044 17.3 0.0 0.014 15.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|124027110|ref|YP_001012430.1| - 0.0083 16.1 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|124027110|ref|YP_001012430.1| - 0.0084 16.2 0.0 0.021 14.9 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|124027110|ref|YP_001012430.1| - 0.0089 15.4 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|124027110|ref|YP_001012430.1| - 0.01 15.6 0.1 0.26 11.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|124027110|ref|YP_001012430.1| - 0.011 15.7 0.0 0.039 14.0 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|124027110|ref|YP_001012430.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|124027110|ref|YP_001012430.1| - 0.017 15.6 0.0 0.032 14.6 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) dNK PF01712.19 gi|124027110|ref|YP_001012430.1| - 0.034 14.0 0.0 0.081 12.8 0.0 1.6 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_24 PF13479.6 gi|124027110|ref|YP_001012430.1| - 0.038 13.7 0.1 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.10 gi|124027110|ref|YP_001012430.1| - 0.048 13.1 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_21 PF13304.6 gi|124027110|ref|YP_001012430.1| - 0.049 13.4 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 gi|124027110|ref|YP_001012430.1| - 0.058 13.5 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 1 0 AAA domain RsgA_GTPase PF03193.16 gi|124027110|ref|YP_001012430.1| - 0.076 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_PrkA PF08298.11 gi|124027110|ref|YP_001012430.1| - 0.092 11.6 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain NACHT PF05729.12 gi|124027110|ref|YP_001012430.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.17 gi|124027110|ref|YP_001012430.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|124027110|ref|YP_001012430.1| - 0.13 11.5 0.0 2.3 7.5 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin AAA_7 PF12775.7 gi|124027110|ref|YP_001012430.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Pilin_N PF07790.11 gi|124027111|ref|YP_001012431.1| - 0.0022 18.9 5.8 0.0032 18.3 5.6 1.4 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal CUE PF02845.16 gi|124027111|ref|YP_001012431.1| - 0.11 12.3 1.3 0.3 10.9 0.0 2.2 2 0 0 2 2 2 0 CUE domain MacB_PCD PF12704.7 gi|124027111|ref|YP_001012431.1| - 0.17 12.3 6.5 0.23 11.8 6.5 1.3 1 1 0 1 1 1 0 MacB-like periplasmic core domain Radical_SAM PF04055.21 gi|124027112|ref|YP_001012432.1| - 8.9e-12 45.7 0.0 1.5e-10 41.7 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|124027112|ref|YP_001012432.1| - 9.9e-05 22.6 0.0 0.00017 21.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PALP PF00291.25 gi|124027113|ref|YP_001012433.1| - 2.6e-90 302.8 4.7 3.4e-90 302.4 4.7 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|124027113|ref|YP_001012433.1| - 5e-08 32.6 0.3 1.4e-07 31.2 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|124027113|ref|YP_001012433.1| - 0.032 14.8 0.0 0.08 13.5 0.0 1.7 1 0 0 1 1 1 0 ACT domain ACT_6 PF13740.6 gi|124027113|ref|YP_001012433.1| - 0.079 12.9 0.0 0.3 11.1 0.0 2.0 1 1 0 1 1 1 0 ACT domain Ribonuc_L-PSP PF01042.21 gi|124027114|ref|YP_001012434.1| - 1.2e-43 148.0 0.0 1.3e-43 147.8 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Topoisom_bac PF01131.20 gi|124027115|ref|YP_001012435.1| - 3.3e-77 260.3 0.0 4.8e-76 256.4 0.0 2.6 2 1 0 2 2 2 1 DNA topoisomerase Toprim PF01751.22 gi|124027115|ref|YP_001012435.1| - 1.4e-19 70.2 0.0 3.2e-18 65.9 0.0 3.0 2 1 0 2 2 2 1 Toprim domain zf_Rg PF17915.1 gi|124027115|ref|YP_001012435.1| - 1.6e-12 46.6 1.3 5.6e-12 44.9 1.3 1.9 1 0 0 1 1 1 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|124027115|ref|YP_001012435.1| - 4.2e-09 36.4 0.0 1e-08 35.1 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|124027115|ref|YP_001012435.1| - 1.6e-08 34.9 0.0 0.0026 18.1 0.0 3.8 4 0 0 4 4 3 2 Helicase conserved C-terminal domain HTH_IclR PF09339.10 gi|124027115|ref|YP_001012435.1| - 0.0042 16.9 0.0 0.0042 16.9 0.0 3.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain DNA_ligase_ZBD PF03119.16 gi|124027115|ref|YP_001012435.1| - 0.0054 16.7 3.5 0.093 12.8 0.1 3.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|124027115|ref|YP_001012435.1| - 0.018 15.1 4.4 0.48 10.6 0.3 2.7 2 0 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|124027115|ref|YP_001012435.1| - 0.034 14.0 3.9 1.6 8.7 0.2 2.6 2 0 0 2 2 2 0 SprT-like zinc ribbon domain ResIII PF04851.15 gi|124027115|ref|YP_001012435.1| - 0.057 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|124027115|ref|YP_001012435.1| - 0.064 12.7 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DUF5344 PF17279.2 gi|124027115|ref|YP_001012435.1| - 0.077 13.6 0.1 0.88 10.2 0.0 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5344) SecA_DEAD PF07517.14 gi|124027115|ref|YP_001012435.1| - 0.17 11.1 0.0 0.81 8.9 0.0 2.1 2 0 0 2 2 2 0 SecA DEAD-like domain RAC_head PF16717.5 gi|124027115|ref|YP_001012435.1| - 0.18 12.8 0.3 2.4 9.2 0.0 3.0 3 0 0 3 3 2 0 Ribosome-associated complex head domain DUF87 PF01935.17 gi|124027115|ref|YP_001012435.1| - 0.19 11.8 1.2 4.6 7.3 0.1 2.9 2 0 0 2 2 2 0 Helicase HerA, central domain TIP120 PF08623.10 gi|124027115|ref|YP_001012435.1| - 0.36 10.6 2.9 1.3 8.7 1.5 2.4 2 0 0 2 2 2 0 TATA-binding protein interacting (TIP20) DZR PF12773.7 gi|124027115|ref|YP_001012435.1| - 0.59 10.2 2.2 10 6.3 0.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|124027115|ref|YP_001012435.1| - 1.5 9.1 3.8 13 6.1 1.0 3.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain Auto_anti-p27 PF06677.12 gi|124027115|ref|YP_001012435.1| - 1.8 8.8 4.6 17 5.7 0.0 2.8 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) CCDC-167 PF15188.6 gi|124027115|ref|YP_001012435.1| - 2.5 8.5 25.4 0.85 10.0 5.8 4.1 3 0 0 3 3 3 0 Coiled-coil domain-containing protein 167 zf-ribbon_3 PF13248.6 gi|124027115|ref|YP_001012435.1| - 2.6 7.6 13.6 0.56 9.7 0.1 3.3 4 0 0 4 4 4 0 zinc-ribbon domain HupH_C PF04809.13 gi|124027116|ref|YP_001012436.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 HupH hydrogenase expression protein, C-terminal conserved region FAA_hydrolase PF01557.18 gi|124027117|ref|YP_001012437.1| - 8.7e-54 182.5 0.1 1.1e-53 182.2 0.1 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Radical_SAM PF04055.21 gi|124027118|ref|YP_001012438.1| - 1.9e-14 54.4 0.0 2.1e-13 51.0 0.0 2.6 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|124027118|ref|YP_001012438.1| - 0.0074 16.3 0.0 0.24 11.4 0.0 2.4 2 0 0 2 2 2 1 B12 binding domain Lactamase_B_2 PF12706.7 gi|124027120|ref|YP_001012440.1| - 3.7e-14 52.7 0.0 4.5e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|124027120|ref|YP_001012440.1| - 9.3e-14 51.9 0.2 1.1e-13 51.6 0.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|124027120|ref|YP_001012440.1| - 0.00043 20.2 0.0 0.0016 18.3 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DinB_2 PF12867.7 gi|124027120|ref|YP_001012440.1| - 0.013 16.0 0.0 0.074 13.6 0.0 1.9 2 0 0 2 2 2 0 DinB superfamily Pyridoxal_deC PF00282.19 gi|124027121|ref|YP_001012441.1| - 5.1e-17 61.7 0.0 6.8e-16 58.0 0.0 2.0 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|124027121|ref|YP_001012441.1| - 1.4e-10 40.7 0.1 2.4e-10 39.9 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|124027121|ref|YP_001012441.1| - 2e-07 30.5 0.0 3.3e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|124027121|ref|YP_001012441.1| - 8.8e-06 25.3 0.4 1.5e-05 24.5 0.4 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SepSecS PF05889.13 gi|124027121|ref|YP_001012441.1| - 0.0007 18.4 0.0 0.00099 17.9 0.0 1.1 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS kleA_kleC PF17383.2 gi|124027122|ref|YP_001012442.1| - 0.14 12.5 3.8 0.3 11.4 3.8 1.6 1 0 0 1 1 1 0 Uncharacterized KorC regulated protein A SNF PF00209.18 gi|124027123|ref|YP_001012443.1| - 7.8e-45 153.5 38.0 2.4e-27 95.8 16.0 2.6 2 1 0 2 2 2 2 Sodium:neurotransmitter symporter family Polysacc_deac_1 PF01522.21 gi|124027124|ref|YP_001012444.1| - 3.8e-22 78.5 0.0 6.5e-22 77.7 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|124027124|ref|YP_001012444.1| - 1.4e-05 24.8 0.0 3.7e-05 23.5 0.0 1.7 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Glyco_hydro_57 PF03065.15 gi|124027124|ref|YP_001012444.1| - 0.0008 18.7 0.0 0.00099 18.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 AhpC-TSA PF00578.21 gi|124027125|ref|YP_001012445.1| - 9e-35 119.3 0.0 1.3e-34 118.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|124027125|ref|YP_001012445.1| - 1.4e-18 67.1 0.0 1.9e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|124027125|ref|YP_001012445.1| - 2.9e-12 46.2 0.0 5.7e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|124027125|ref|YP_001012445.1| - 0.017 15.2 0.0 0.045 13.9 0.0 1.3 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme MazE_antitoxin PF04014.18 gi|124027126|ref|YP_001012446.1| - 0.00016 21.5 1.0 0.00026 20.9 1.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|124027126|ref|YP_001012446.1| - 0.0017 18.3 0.1 0.0029 17.5 0.0 1.5 2 1 0 2 2 2 1 MraZ protein, putative antitoxin-like DUF4147 PF13660.6 gi|124027127|ref|YP_001012447.1| - 1.8e-70 237.1 0.0 2.6e-70 236.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|124027127|ref|YP_001012447.1| - 2.3e-35 121.1 0.4 2.3e-35 121.1 0.4 2.0 2 0 0 2 2 2 1 MOFRL family ABC_tran PF00005.27 gi|124027128|ref|YP_001012448.1| - 7.4e-31 107.5 0.0 8.9e-31 107.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|124027128|ref|YP_001012448.1| - 7e-06 26.5 0.9 3.6e-05 24.2 1.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|124027128|ref|YP_001012448.1| - 1.9e-05 24.6 1.7 0.0006 19.7 0.2 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|124027128|ref|YP_001012448.1| - 3.3e-05 23.7 1.1 0.004 16.9 1.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|124027128|ref|YP_001012448.1| - 7.2e-05 23.2 0.1 0.33 11.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|124027128|ref|YP_001012448.1| - 7.8e-05 22.3 0.1 0.00015 21.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|124027128|ref|YP_001012448.1| - 9e-05 23.1 0.0 0.00013 22.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|124027128|ref|YP_001012448.1| - 0.00043 19.8 0.1 0.39 10.1 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 gi|124027128|ref|YP_001012448.1| - 0.0013 18.7 0.0 0.14 12.0 0.0 2.2 2 0 0 2 2 2 1 NTPase NACHT PF05729.12 gi|124027128|ref|YP_001012448.1| - 0.0038 17.1 0.0 0.0065 16.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SSE PF00437.20 gi|124027128|ref|YP_001012448.1| - 0.0093 15.0 0.2 0.024 13.7 0.2 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|124027128|ref|YP_001012448.1| - 0.0094 16.2 0.6 0.1 12.8 0.6 2.2 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|124027128|ref|YP_001012448.1| - 0.01 16.1 0.5 0.15 12.4 0.5 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.19 gi|124027128|ref|YP_001012448.1| - 0.018 14.7 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|124027128|ref|YP_001012448.1| - 0.038 14.2 0.0 0.086 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|124027128|ref|YP_001012448.1| - 0.047 13.6 0.0 0.05 13.5 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|124027128|ref|YP_001012448.1| - 0.068 12.7 0.4 0.21 11.2 0.4 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|124027128|ref|YP_001012448.1| - 0.072 13.5 0.2 0.13 12.7 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DLIC PF05783.11 gi|124027128|ref|YP_001012448.1| - 0.11 11.3 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_15 PF13175.6 gi|124027128|ref|YP_001012448.1| - 0.13 11.9 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 gi|124027128|ref|YP_001012448.1| - 0.14 12.0 0.1 0.28 11.1 0.1 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_14 PF13173.6 gi|124027128|ref|YP_001012448.1| - 0.16 12.0 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|124027128|ref|YP_001012448.1| - 0.2 10.8 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_13 PF13166.6 gi|124027128|ref|YP_001012448.1| - 0.28 9.8 0.0 0.41 9.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain US22 PF02393.16 gi|124027131|ref|YP_001012450.1| - 0.0092 16.2 0.9 0.016 15.4 0.2 1.8 2 0 0 2 2 2 1 US22 like MFS_1 PF07690.16 gi|124027132|ref|YP_001012452.1| - 2.4e-05 23.4 48.6 2.4e-05 23.4 48.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily HD PF01966.22 gi|124027133|ref|YP_001012453.1| - 2.5e-10 40.6 0.3 8.7e-10 38.9 0.1 2.1 2 0 0 2 2 2 1 HD domain ABC_tran PF00005.27 gi|124027136|ref|YP_001012456.1| - 1.8e-32 112.7 0.0 2.8e-32 112.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027136|ref|YP_001012456.1| - 1.9e-12 47.6 2.1 5.1e-08 33.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 gi|124027136|ref|YP_001012456.1| - 2.9e-05 23.7 0.0 6.2e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|124027136|ref|YP_001012456.1| - 5.9e-05 22.7 0.2 0.00012 21.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|124027136|ref|YP_001012456.1| - 6e-05 22.6 0.0 0.0013 18.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|124027136|ref|YP_001012456.1| - 0.00088 19.7 0.1 0.0016 18.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|124027136|ref|YP_001012456.1| - 0.0029 16.7 0.1 0.0064 15.6 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|124027136|ref|YP_001012456.1| - 0.0082 16.7 0.0 0.11 13.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|124027136|ref|YP_001012456.1| - 0.01 15.1 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|124027136|ref|YP_001012456.1| - 0.017 15.1 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|124027136|ref|YP_001012456.1| - 0.049 14.1 0.0 0.072 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|124027136|ref|YP_001012456.1| - 0.11 12.5 0.1 0.28 11.2 0.1 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|124027136|ref|YP_001012456.1| - 0.12 12.7 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|124027136|ref|YP_001012456.1| - 0.12 11.7 0.1 0.77 9.1 0.1 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|124027136|ref|YP_001012456.1| - 0.12 12.0 0.1 0.27 10.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|124027136|ref|YP_001012456.1| - 0.16 11.7 0.0 18 4.9 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|124027136|ref|YP_001012456.1| - 0.22 11.7 0.2 0.48 10.6 0.2 1.7 1 1 0 1 1 1 0 AAA domain CbiQ PF02361.16 gi|124027137|ref|YP_001012457.1| - 2.4e-12 47.0 9.4 3.7e-12 46.3 9.4 1.3 1 0 0 1 1 1 1 Cobalt transport protein BrnT_toxin PF04365.13 gi|124027137|ref|YP_001012457.1| - 0.12 12.7 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system PDGLE PF13190.6 gi|124027138|ref|YP_001012458.1| - 3.6e-07 30.0 0.7 9.8e-07 28.6 0.6 1.8 1 1 0 1 1 1 1 PDGLE domain CbiM PF01891.16 gi|124027139|ref|YP_001012459.1| - 8e-68 228.3 16.2 9.1e-68 228.2 16.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|124027139|ref|YP_001012459.1| - 0.025 14.7 21.3 0.16 12.0 21.7 2.0 1 1 0 1 1 1 0 ECF transporter, substrate-specific component Ldr_toxin PF13940.6 gi|124027139|ref|YP_001012459.1| - 0.51 10.4 6.2 0.98 9.5 0.0 3.6 3 0 0 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system NiFe_hyd_3_EhaA PF17367.2 gi|124027139|ref|YP_001012459.1| - 0.95 9.6 5.2 1.8 8.8 0.0 3.1 2 1 1 3 3 3 0 NiFe-hydrogenase-type-3 Eha complex subunit A 5TM-5TMR_LYT PF07694.12 gi|124027139|ref|YP_001012459.1| - 5 6.6 26.2 2.1 7.8 8.7 2.8 1 1 2 3 3 3 0 5TMR of 5TMR-LYT GIT_CC PF16559.5 gi|124027140|ref|YP_001012460.1| - 0.015 15.2 1.1 0.032 14.1 1.1 1.5 1 0 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor Imm3 PF14425.6 gi|124027140|ref|YP_001012460.1| - 0.016 15.2 0.3 0.039 14.0 0.3 1.6 1 0 0 1 1 1 0 Immunity protein Imm3 Prefoldin_2 PF01920.20 gi|124027140|ref|YP_001012460.1| - 0.019 14.9 1.9 0.033 14.1 1.9 1.3 1 0 0 1 1 1 0 Prefoldin subunit Prefoldin PF02996.17 gi|124027140|ref|YP_001012460.1| - 0.045 13.7 1.0 0.34 10.8 0.7 2.1 2 0 0 2 2 2 0 Prefoldin subunit ZapB PF06005.12 gi|124027140|ref|YP_001012460.1| - 0.051 14.0 2.0 0.13 12.7 2.0 1.6 1 0 0 1 1 1 0 Cell division protein ZapB Lge1 PF11488.8 gi|124027140|ref|YP_001012460.1| - 0.052 13.7 0.2 0.095 12.9 0.2 1.4 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 HemX PF04375.14 gi|124027140|ref|YP_001012460.1| - 0.1 11.9 0.3 0.17 11.2 0.3 1.3 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF1664 PF07889.12 gi|124027140|ref|YP_001012460.1| - 0.11 12.5 0.4 0.21 11.7 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Sec2p PF06428.11 gi|124027140|ref|YP_001012460.1| - 0.12 12.4 0.7 0.19 11.7 0.7 1.2 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p FlaC_arch PF05377.11 gi|124027140|ref|YP_001012460.1| - 0.16 12.4 2.9 0.31 11.5 2.9 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Seryl_tRNA_N PF02403.22 gi|124027140|ref|YP_001012460.1| - 0.17 12.1 0.9 0.26 11.5 0.9 1.2 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain TBCC_N PF16752.5 gi|124027140|ref|YP_001012460.1| - 0.2 12.1 0.7 0.35 11.3 0.7 1.3 1 0 0 1 1 1 0 Tubulin-specific chaperone C N-terminal domain SlyX PF04102.12 gi|124027140|ref|YP_001012460.1| - 1.7 9.3 8.3 0.12 13.0 3.2 1.7 2 0 0 2 2 1 0 SlyX S4 PF01479.25 gi|124027141|ref|YP_001012461.1| - 0.059 13.1 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 S4 domain Proteasome_A_N PF10584.9 gi|124027142|ref|YP_001012462.1| - 0.058 13.1 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Proteasome subunit A N-terminal signature Me-amine-dh_H PF06433.11 gi|124027142|ref|YP_001012462.1| - 0.094 11.6 0.0 0.27 10.1 0.0 1.6 2 0 0 2 2 2 0 Methylamine dehydrogenase heavy chain (MADH) zf-ribbon_3 PF13248.6 gi|124027143|ref|YP_001012463.1| - 4e-10 38.7 8.9 1.7e-05 24.0 1.6 3.3 3 0 0 3 3 3 3 zinc-ribbon domain DZR PF12773.7 gi|124027143|ref|YP_001012463.1| - 3.1e-09 36.7 5.2 1.4e-06 28.3 2.8 2.2 2 0 0 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|124027143|ref|YP_001012463.1| - 1.4e-06 27.8 16.1 0.00096 18.8 2.0 3.2 1 1 2 3 3 3 3 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|124027143|ref|YP_001012463.1| - 1.1e-05 25.5 13.6 0.014 15.5 4.4 3.6 2 1 1 3 3 3 2 Zinc ribbon domain UPF0547 PF10571.9 gi|124027143|ref|YP_001012463.1| - 6.7e-05 22.9 5.7 0.039 14.0 0.7 3.4 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.12 gi|124027143|ref|YP_001012463.1| - 0.0017 18.3 4.8 0.02 14.8 4.8 2.1 1 1 0 1 1 1 1 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|124027143|ref|YP_001012463.1| - 0.0019 17.7 13.9 1.7 8.3 0.0 3.8 2 1 0 3 3 3 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|124027143|ref|YP_001012463.1| - 0.0043 16.9 6.9 1.8 8.5 0.0 3.9 4 0 0 4 4 4 1 zinc-ribbon domain PolC_DP2 PF03833.13 gi|124027143|ref|YP_001012463.1| - 0.0059 14.5 0.5 0.0078 14.1 0.5 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Zn_ribbon_SprT PF17283.2 gi|124027143|ref|YP_001012463.1| - 0.0061 16.4 12.8 0.018 15.0 4.7 3.2 3 0 0 3 3 3 1 SprT-like zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|124027143|ref|YP_001012463.1| - 0.01 15.8 9.3 7.8 6.6 0.0 4.3 4 0 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_15 PF17032.5 gi|124027143|ref|YP_001012463.1| - 0.018 15.8 5.5 0.053 14.3 2.8 2.3 2 1 0 2 2 2 0 zinc-ribbon family E7 PF00527.18 gi|124027143|ref|YP_001012463.1| - 0.02 15.1 3.0 0.25 11.5 0.2 2.5 1 1 1 2 2 2 0 E7 protein, Early protein Cys_rich_CPXG PF14255.6 gi|124027143|ref|YP_001012463.1| - 0.021 14.7 10.2 1.4 8.9 0.0 4.1 3 1 1 4 4 4 0 Cysteine-rich CPXCG zf-RING_7 PF02591.15 gi|124027143|ref|YP_001012463.1| - 0.038 14.2 15.5 4.4 7.6 0.4 4.3 4 0 0 4 4 4 0 C4-type zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|124027143|ref|YP_001012463.1| - 0.087 12.6 11.9 6.7 6.6 0.4 4.0 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf_UBZ PF18439.1 gi|124027143|ref|YP_001012463.1| - 0.1 12.2 8.3 9.1 6.0 0.3 4.0 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|124027143|ref|YP_001012463.1| - 0.12 12.3 16.6 7.3 6.7 3.8 4.1 1 1 3 4 4 4 0 Transposase zinc-ribbon domain zinc-ribbon_6 PF10005.9 gi|124027143|ref|YP_001012463.1| - 0.14 12.8 4.2 0.29 11.9 0.5 2.4 1 1 2 3 3 3 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|124027143|ref|YP_001012463.1| - 0.14 12.1 10.8 0.22 11.5 0.9 3.1 2 1 0 3 3 3 0 Prokaryotic RING finger family 1 Nop10p PF04135.12 gi|124027143|ref|YP_001012463.1| - 0.16 12.0 10.1 0.11 12.6 1.1 2.6 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family Nudix_N_2 PF14803.6 gi|124027143|ref|YP_001012463.1| - 0.17 11.8 10.9 3.7 7.5 0.1 4.1 2 1 0 2 2 2 0 Nudix N-terminal zf-LITAF-like PF10601.9 gi|124027143|ref|YP_001012463.1| - 0.2 12.0 10.7 3.4 8.0 1.4 3.5 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain CpXC PF14353.6 gi|124027143|ref|YP_001012463.1| - 0.26 11.3 12.7 8.3 6.5 0.1 4.1 1 1 1 3 3 3 0 CpXC protein HypA PF01155.19 gi|124027143|ref|YP_001012463.1| - 0.29 11.2 8.6 0.89 9.6 0.9 2.6 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|124027143|ref|YP_001012463.1| - 0.29 10.8 8.4 32 4.1 8.5 2.2 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 TerY_C PF15616.6 gi|124027143|ref|YP_001012463.1| - 0.29 11.2 8.6 0.18 11.9 3.7 2.2 1 1 1 2 2 2 0 TerY-C metal binding domain zf-ACC PF17848.1 gi|124027143|ref|YP_001012463.1| - 0.29 11.2 15.7 0.41 10.8 0.4 4.3 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|124027143|ref|YP_001012463.1| - 0.34 10.9 10.9 8.7 6.4 1.7 3.2 1 1 3 4 4 4 0 Putative transposase DNA-binding domain zf-tcix PF14952.6 gi|124027143|ref|YP_001012463.1| - 0.42 10.3 21.4 3.2 7.5 3.8 4.1 2 1 2 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_5 PF13719.6 gi|124027143|ref|YP_001012463.1| - 0.42 10.4 0.0 0.42 10.4 0.0 3.3 3 1 1 4 4 4 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|124027143|ref|YP_001012463.1| - 0.48 10.9 16.6 1.5 9.3 0.1 4.2 2 2 2 4 4 4 0 zinc-finger binding domain of transposase IS66 DiS_P_DiS PF06750.13 gi|124027143|ref|YP_001012463.1| - 0.6 10.3 3.9 19 5.5 4.0 2.5 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain ADK_lid PF05191.14 gi|124027143|ref|YP_001012463.1| - 1.1 9.3 11.6 10 6.2 0.2 4.2 4 0 0 4 4 4 0 Adenylate kinase, active site lid NRDD PF13597.6 gi|124027143|ref|YP_001012463.1| - 1.3 7.7 9.1 1.5 7.5 1.3 2.2 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-ISL3 PF14690.6 gi|124027143|ref|YP_001012463.1| - 1.3 9.7 14.7 26 5.6 0.2 4.2 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 YacG PF03884.14 gi|124027143|ref|YP_001012463.1| - 1.3 8.8 7.8 16 5.3 1.3 3.4 3 0 0 3 3 3 0 DNA gyrase inhibitor YacG Zn_ribbon_recom PF13408.6 gi|124027143|ref|YP_001012463.1| - 1.7 9.2 8.0 4.4 7.9 8.0 1.8 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-HYPF PF07503.12 gi|124027143|ref|YP_001012463.1| - 1.8 8.4 13.8 17 5.3 0.4 4.0 4 0 0 4 4 4 0 HypF finger FYDLN_acid PF09538.10 gi|124027143|ref|YP_001012463.1| - 1.9 9.2 9.3 27 5.5 0.1 3.1 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-NADH-PPase PF09297.11 gi|124027143|ref|YP_001012463.1| - 2.1 8.1 17.3 17 5.2 0.4 5.0 4 1 1 5 5 5 0 NADH pyrophosphatase zinc ribbon domain DUF1610 PF07754.11 gi|124027143|ref|YP_001012463.1| - 2.2 8.3 15.8 2.7 8.0 0.3 4.2 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) Ribosomal_L32p PF01783.23 gi|124027143|ref|YP_001012463.1| - 2.4 8.5 11.7 1.1 9.5 2.2 2.8 1 1 2 3 3 3 0 Ribosomal L32p protein family Ogr_Delta PF04606.12 gi|124027143|ref|YP_001012463.1| - 2.5 8.1 12.7 23 5.0 0.1 4.2 3 1 1 4 4 4 0 Ogr/Delta-like zinc finger PriA_CRR PF18319.1 gi|124027143|ref|YP_001012463.1| - 3.1 7.9 7.8 27 4.8 0.6 3.7 3 1 0 3 3 3 0 PriA DNA helicase Cys-rich region (CRR) domain DUF1272 PF06906.11 gi|124027143|ref|YP_001012463.1| - 4.2 7.5 12.5 1.1e+02 3.0 12.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-C3HC4_3 PF13920.6 gi|124027143|ref|YP_001012463.1| - 6.1 6.8 11.1 17 5.3 5.5 2.9 1 1 2 3 3 3 0 Zinc finger, C3HC4 type (RING finger) RNA_POL_M_15KD PF02150.16 gi|124027143|ref|YP_001012463.1| - 6.7 6.7 7.9 4 7.4 0.9 3.3 3 1 1 4 4 3 0 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.6 gi|124027143|ref|YP_001012463.1| - 7.2 6.0 14.0 9.2 5.7 0.1 3.7 3 1 1 4 4 4 0 Transcription factor zinc-finger DNA_RNApol_7kD PF03604.13 gi|124027143|ref|YP_001012463.1| - 7.6 6.3 10.2 5.7 6.7 0.1 3.4 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2 PF00096.26 gi|124027143|ref|YP_001012463.1| - 8.3 7.1 11.2 51 4.6 0.5 4.1 4 0 0 4 4 4 0 Zinc finger, C2H2 type Sgf11 PF08209.11 gi|124027143|ref|YP_001012463.1| - 8.9 6.0 11.5 6 6.5 0.1 3.8 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) DUF35_N PF12172.8 gi|124027143|ref|YP_001012463.1| - 9.7 6.2 18.8 4.4 7.3 6.0 3.4 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FTA2 PF13095.6 gi|124027144|ref|YP_001012464.1| - 0.021 14.5 0.0 0.57 9.8 0.0 2.1 2 0 0 2 2 2 0 Kinetochore Sim4 complex subunit FTA2 Pkinase PF00069.25 gi|124027144|ref|YP_001012464.1| - 0.16 11.3 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein kinase domain Kdo PF06293.14 gi|124027144|ref|YP_001012464.1| - 0.19 11.1 0.0 0.37 10.1 0.0 1.4 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family VWA PF00092.28 gi|124027145|ref|YP_001012465.1| - 2.6e-09 37.6 0.0 4.6e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|124027145|ref|YP_001012465.1| - 1.1e-08 35.7 0.0 5.8e-08 33.3 0.0 2.0 1 1 1 2 2 2 1 von Willebrand factor type A domain Copine PF07002.16 gi|124027145|ref|YP_001012465.1| - 0.028 13.9 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 Copine RuvB_C PF05491.13 gi|124027145|ref|YP_001012465.1| - 0.059 13.2 0.1 6.3 6.7 0.0 2.5 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain IMS_C PF11799.8 gi|124027145|ref|YP_001012465.1| - 0.15 12.8 0.4 0.48 11.1 0.4 2.1 1 1 0 1 1 1 0 impB/mucB/samB family C-terminal domain Polyketide_cyc2 PF10604.9 gi|124027146|ref|YP_001012466.1| - 0.06 13.6 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport PP2C_2 PF13672.6 gi|124027147|ref|YP_001012467.1| - 9.9e-09 35.1 0.0 3.2e-08 33.5 0.0 1.8 1 1 0 1 1 1 1 Protein phosphatase 2C NYD-SP12_N PF15015.6 gi|124027147|ref|YP_001012467.1| - 0.037 12.4 0.2 0.05 12.0 0.2 1.1 1 0 0 1 1 1 0 Spermatogenesis-associated, N-terminal Lactamase_B PF00753.27 gi|124027149|ref|YP_001012469.1| - 7.9e-06 26.0 0.0 1.7e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|124027149|ref|YP_001012469.1| - 0.00058 19.4 0.0 0.0016 18.0 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Thi4 PF01946.17 gi|124027150|ref|YP_001012470.1| - 3.1e-55 187.0 0.6 3.6e-55 186.8 0.6 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|124027150|ref|YP_001012470.1| - 4e-08 33.2 7.1 0.00045 19.9 4.5 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|124027150|ref|YP_001012470.1| - 7.6e-08 32.1 3.0 1.4e-07 31.3 3.0 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|124027150|ref|YP_001012470.1| - 8e-08 31.8 7.7 2.8e-05 23.4 3.7 3.1 2 1 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|124027150|ref|YP_001012470.1| - 1.6e-07 31.4 1.1 4.3e-07 30.1 1.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|124027150|ref|YP_001012470.1| - 1.8e-06 27.5 2.6 2.7e-06 26.9 2.6 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|124027150|ref|YP_001012470.1| - 1e-05 25.0 0.5 4e-05 23.0 0.3 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|124027150|ref|YP_001012470.1| - 0.00023 20.0 1.9 0.00039 19.3 1.9 1.3 1 0 0 1 1 1 1 HI0933-like protein Amino_oxidase PF01593.24 gi|124027150|ref|YP_001012470.1| - 0.002 17.5 1.5 0.002 17.5 1.5 1.5 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|124027150|ref|YP_001012470.1| - 0.003 16.7 2.9 0.0045 16.1 2.9 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|124027150|ref|YP_001012470.1| - 0.0044 16.3 1.1 0.0065 15.8 1.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|124027150|ref|YP_001012470.1| - 0.0082 15.2 2.4 0.012 14.6 1.4 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|124027150|ref|YP_001012470.1| - 0.17 10.7 2.5 0.3 9.9 1.7 1.7 2 0 0 2 2 2 0 Tryptophan halogenase TrkA_C PF02080.21 gi|124027151|ref|YP_001012471.1| - 2.9e-13 49.4 0.0 6.5e-13 48.3 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain HTH_20 PF12840.7 gi|124027151|ref|YP_001012471.1| - 0.032 14.3 0.1 0.15 12.1 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|124027153|ref|YP_001012473.1| - 7.9e-24 84.9 0.1 1.1e-23 84.4 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|124027153|ref|YP_001012473.1| - 1.1e-06 28.8 0.0 1.9e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|124027153|ref|YP_001012473.1| - 1.9e-06 28.2 0.0 3.3e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Metallophos_2 PF12850.7 gi|124027154|ref|YP_001012474.1| - 1.4e-15 57.9 0.0 2e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|124027154|ref|YP_001012474.1| - 6.1e-12 45.4 0.9 1.8e-09 37.3 0.0 3.0 2 1 1 3 3 3 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|124027154|ref|YP_001012474.1| - 4.1e-06 27.5 2.1 4.7e-05 24.0 2.1 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Sensor PF13796.6 gi|124027155|ref|YP_001012475.1| - 0.0015 18.6 6.3 0.0028 17.7 6.3 1.4 1 1 0 1 1 1 1 Putative sensor RseC_MucC PF04246.12 gi|124027155|ref|YP_001012475.1| - 0.33 10.9 3.7 0.19 11.7 0.4 1.9 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Transgly_assoc PF04226.13 gi|124027155|ref|YP_001012475.1| - 0.33 11.2 7.8 0.31 11.3 1.5 2.7 1 1 2 3 3 3 0 Transglycosylase associated protein DUF2937 PF11157.8 gi|124027155|ref|YP_001012475.1| - 1.6 8.4 7.1 2 8.1 0.2 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2937) LapA_dom PF06305.11 gi|124027155|ref|YP_001012475.1| - 1.8 8.5 8.3 3.2 7.7 1.3 2.3 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain BatA PF07584.11 gi|124027155|ref|YP_001012475.1| - 4 7.9 8.6 13 6.3 3.7 2.4 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal ABC_tran PF00005.27 gi|124027156|ref|YP_001012476.1| - 8.3e-24 84.7 0.0 1.4e-23 83.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027156|ref|YP_001012476.1| - 3.2e-11 43.6 0.0 5.9e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|124027156|ref|YP_001012476.1| - 4.1e-05 23.4 0.4 0.00038 20.2 0.0 2.3 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 gi|124027156|ref|YP_001012476.1| - 0.00034 20.1 0.1 0.72 9.3 0.3 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MukB PF04310.12 gi|124027156|ref|YP_001012476.1| - 0.00073 19.4 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 MukB N-terminal AAA_27 PF13514.6 gi|124027156|ref|YP_001012476.1| - 0.00095 18.8 0.0 0.0022 17.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|124027156|ref|YP_001012476.1| - 0.0016 19.0 0.1 0.0026 18.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|124027156|ref|YP_001012476.1| - 0.029 14.1 0.1 0.078 12.7 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain Ret2_MD PF18528.1 gi|124027156|ref|YP_001012476.1| - 0.1 13.0 0.1 0.5 10.8 0.0 2.3 3 1 0 3 3 2 0 RNA editing 3' terminal uridylyl transferase 2 middle domain AAA_22 PF13401.6 gi|124027156|ref|YP_001012476.1| - 0.13 12.5 0.6 0.5 10.6 0.5 2.1 1 1 0 1 1 1 0 AAA domain LytR_C PF13399.6 gi|124027156|ref|YP_001012476.1| - 0.14 13.2 0.9 0.56 11.2 0.6 2.2 1 1 1 2 2 2 0 LytR cell envelope-related transcriptional attenuator AAA_19 PF13245.6 gi|124027156|ref|YP_001012476.1| - 0.36 11.2 1.2 0.41 11.0 0.4 1.7 2 1 0 2 2 2 0 AAA domain RHH_1 PF01402.21 gi|124027156|ref|YP_001012476.1| - 3.5 7.7 9.9 2.6 8.1 3.0 3.2 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family His_Phos_1 PF00300.22 gi|124027157|ref|YP_001012477.1| - 2.7e-12 46.8 0.1 1e-11 44.9 0.1 1.8 1 1 1 2 2 2 1 Histidine phosphatase superfamily (branch 1) DHO_dh PF01180.21 gi|124027158|ref|YP_001012478.1| - 4.6e-51 173.8 0.0 5.3e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|124027158|ref|YP_001012478.1| - 1.3e-10 40.9 0.3 8.8e-08 31.6 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|124027158|ref|YP_001012478.1| - 1.5e-05 24.6 8.8 0.0029 17.1 1.3 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|124027158|ref|YP_001012478.1| - 0.00036 20.0 1.9 0.52 9.7 0.2 3.7 3 1 0 3 3 3 2 Glycerol-3-phosphate responsive antiterminator His_biosynth PF00977.21 gi|124027158|ref|YP_001012478.1| - 0.00063 19.3 1.8 0.0048 16.4 0.1 2.7 3 1 0 3 3 3 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|124027158|ref|YP_001012478.1| - 0.0014 17.7 6.9 0.2 10.6 0.2 4.1 3 2 1 5 5 5 2 IMP dehydrogenase / GMP reductase domain PEP_mutase PF13714.6 gi|124027158|ref|YP_001012478.1| - 0.0079 15.7 1.2 0.088 12.2 0.5 2.5 3 0 0 3 3 3 1 Phosphoenolpyruvate phosphomutase CYTH PF01928.21 gi|124027159|ref|YP_001012479.1| - 1.5e-37 129.3 2.6 1.7e-37 129.1 2.6 1.0 1 0 0 1 1 1 1 CYTH domain MCR_alpha_N PF02745.15 gi|124027159|ref|YP_001012479.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, N-terminal domain DUF4381 PF14316.6 gi|124027160|ref|YP_001012480.1| - 0.02 15.2 4.5 0.74 10.1 1.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) ATP-synt_S1 PF05827.12 gi|124027160|ref|YP_001012480.1| - 0.038 13.8 0.9 4.4 7.1 0.0 2.1 2 0 0 2 2 2 0 Vacuolar ATP synthase subunit S1 (ATP6S1) MttA_Hcf106 PF02416.16 gi|124027161|ref|YP_001012481.1| - 1.2e-15 56.6 0.1 2.1e-15 55.8 0.1 1.4 1 0 0 1 1 1 1 mttA/Hcf106 family RHH_1 PF01402.21 gi|124027161|ref|YP_001012481.1| - 0.024 14.6 2.3 0.24 11.4 1.8 2.7 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family Rho_N PF07498.12 gi|124027161|ref|YP_001012481.1| - 0.025 14.5 0.2 0.066 13.2 0.2 1.7 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain Phage_Gp23 PF10669.9 gi|124027161|ref|YP_001012481.1| - 0.043 14.2 0.1 0.061 13.7 0.1 1.2 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) ArsA_ATPase PF02374.15 gi|124027162|ref|YP_001012482.1| - 3.4e-20 72.5 0.0 5.2e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|124027162|ref|YP_001012482.1| - 1.1e-08 35.2 0.0 2.4e-08 34.1 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|124027162|ref|YP_001012482.1| - 1.1e-07 31.5 0.1 0.00018 21.1 0.2 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|124027162|ref|YP_001012482.1| - 2.1e-05 24.5 0.0 3.3e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|124027162|ref|YP_001012482.1| - 0.002 17.4 0.2 0.0059 15.9 0.2 1.6 2 0 0 2 2 2 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|124027162|ref|YP_001012482.1| - 0.0068 15.9 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|124027162|ref|YP_001012482.1| - 0.034 13.6 0.1 0.054 12.9 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|124027162|ref|YP_001012482.1| - 0.092 12.3 0.6 0.19 11.3 0.6 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|124027162|ref|YP_001012482.1| - 0.098 12.4 0.3 0.18 11.5 0.3 1.4 1 0 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|124027162|ref|YP_001012482.1| - 0.12 11.5 0.3 0.18 10.8 0.3 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase SRP54 PF00448.22 gi|124027162|ref|YP_001012482.1| - 0.19 11.3 0.3 0.62 9.7 0.2 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|124027162|ref|YP_001012482.1| - 0.2 10.6 0.1 0.34 9.9 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB HhH-GPD PF00730.25 gi|124027163|ref|YP_001012483.1| - 5.5e-21 75.0 0.0 7.3e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|124027163|ref|YP_001012483.1| - 3.2e-06 27.3 8.7 6.6e-06 26.3 8.7 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|124027163|ref|YP_001012483.1| - 0.00038 20.2 0.0 0.0012 18.6 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|124027163|ref|YP_001012483.1| - 0.0046 17.5 0.7 0.065 13.9 0.1 2.4 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|124027163|ref|YP_001012483.1| - 0.028 14.8 0.1 0.12 12.7 0.1 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix domain ABATE PF07336.11 gi|124027163|ref|YP_001012483.1| - 0.038 14.7 1.6 0.061 14.0 1.6 1.5 1 0 0 1 1 1 0 Putative stress-induced transcription regulator Transposase_20 PF02371.16 gi|124027163|ref|YP_001012483.1| - 0.12 12.7 0.1 1.5 9.2 0.0 2.6 3 0 0 3 3 3 0 Transposase IS116/IS110/IS902 family MFS_1 PF07690.16 gi|124027165|ref|YP_001012485.1| - 1.5e-42 145.8 39.1 3.3e-27 95.4 15.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|124027165|ref|YP_001012485.1| - 1.2e-09 37.5 5.1 1.2e-09 37.5 5.1 3.1 1 1 3 4 4 4 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|124027165|ref|YP_001012485.1| - 2.4e-07 30.0 14.0 4.7e-06 25.7 2.2 2.3 2 0 0 2 2 2 2 MFS_1 like family Dpy19 PF10034.9 gi|124027165|ref|YP_001012485.1| - 5.2 5.2 8.4 2.2 6.4 1.3 2.2 2 0 0 2 2 2 0 Q-cell neuroblast polarisation AA_kinase PF00696.28 gi|124027166|ref|YP_001012486.1| - 6.5e-33 114.3 0.0 9.4e-33 113.8 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family Lipase_GDSL PF00657.22 gi|124027166|ref|YP_001012486.1| - 0.2 11.6 0.0 0.51 10.3 0.0 1.6 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase S4 PF01479.25 gi|124027166|ref|YP_001012486.1| - 0.59 9.9 2.4 14 5.5 0.0 3.5 4 0 0 4 4 4 0 S4 domain DegS PF05384.11 gi|124027167|ref|YP_001012487.1| - 0.067 12.7 0.8 0.093 12.2 0.8 1.1 1 0 0 1 1 1 0 Sensor protein DegS Tropomyosin_1 PF12718.7 gi|124027167|ref|YP_001012487.1| - 0.07 13.3 1.3 0.097 12.8 1.3 1.2 1 0 0 1 1 1 0 Tropomyosin like DUF5446 PF17522.2 gi|124027167|ref|YP_001012487.1| - 0.1 12.8 1.0 0.17 12.0 1.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5446) Metallophos PF00149.28 gi|124027168|ref|YP_001012488.1| - 4.6e-11 43.6 0.2 9.8e-09 36.0 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|124027168|ref|YP_001012488.1| - 4.4e-08 33.5 0.0 6.7e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DOT1 PF08123.13 gi|124027170|ref|YP_001012490.1| - 8.1e-06 25.5 0.0 1.6e-05 24.5 0.0 1.8 1 1 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.13 gi|124027170|ref|YP_001012490.1| - 2.9e-05 23.6 0.0 3.9e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|124027170|ref|YP_001012490.1| - 3e-05 24.6 0.0 4.6e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|124027170|ref|YP_001012490.1| - 0.00017 21.4 0.0 0.00044 20.1 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|124027170|ref|YP_001012490.1| - 0.00058 20.5 0.0 0.00095 19.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|124027170|ref|YP_001012490.1| - 0.0024 17.0 0.0 0.003 16.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_2 PF00891.18 gi|124027170|ref|YP_001012490.1| - 0.027 13.8 0.0 0.034 13.4 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_18 PF12847.7 gi|124027170|ref|YP_001012490.1| - 0.038 13.9 0.0 0.054 13.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|124027170|ref|YP_001012490.1| - 0.063 12.7 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_23 PF13489.6 gi|124027170|ref|YP_001012490.1| - 0.13 12.1 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Radical_SAM PF04055.21 gi|124027171|ref|YP_001012491.1| - 6.6e-22 78.7 0.0 1.2e-21 77.8 0.0 1.4 2 0 0 2 2 2 1 Radical SAM superfamily Lactamase_B PF00753.27 gi|124027172|ref|YP_001012492.1| - 9.9e-13 48.5 5.1 5.9e-12 46.0 5.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|124027172|ref|YP_001012492.1| - 3.5e-06 26.7 0.3 8e-06 25.5 0.2 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain GLTT PF01744.20 gi|124027172|ref|YP_001012492.1| - 0.01 15.6 2.2 0.021 14.6 2.2 1.6 1 0 0 1 1 1 1 GLTT repeat (6 copies) Lactamase_B PF00753.27 gi|124027173|ref|YP_001012493.1| - 1.3e-10 41.6 2.0 1.5e-09 38.2 0.0 2.6 2 1 1 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|124027173|ref|YP_001012493.1| - 3.6e-06 26.6 0.0 6.9e-06 25.7 0.0 1.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain AAA_21 PF13304.6 gi|124027174|ref|YP_001012494.1| - 0.00067 19.6 0.0 0.00084 19.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|124027174|ref|YP_001012494.1| - 0.012 16.1 0.0 0.018 15.6 0.0 1.2 1 0 0 1 1 1 0 ABC transporter DUF983 PF06170.12 gi|124027175|ref|YP_001012495.1| - 0.5 10.8 0.2 0.5 10.8 0.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF983) DUF4129 PF13559.6 gi|124027177|ref|YP_001012497.1| - 2.9e-07 30.6 9.6 2.9e-07 30.6 9.6 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) MAP17 PF15807.5 gi|124027177|ref|YP_001012497.1| - 2e-05 24.8 0.1 2.8e-05 24.4 0.1 1.1 1 0 0 1 1 1 1 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 DUF711 PF05167.12 gi|124027178|ref|YP_001012498.1| - 5.5e-38 130.9 0.0 1.8e-37 129.2 0.0 1.8 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) HTH_23 PF13384.6 gi|124027178|ref|YP_001012498.1| - 0.11 12.3 0.4 0.3 10.9 0.4 1.7 1 0 0 1 1 1 0 Homeodomain-like domain MatE PF01554.18 gi|124027179|ref|YP_001012499.1| - 4e-46 156.6 33.2 2.7e-26 92.1 8.1 2.9 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|124027179|ref|YP_001012499.1| - 2.1e-10 40.8 13.2 2.1e-10 40.8 13.2 3.8 3 2 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain DUF371 PF04027.13 gi|124027180|ref|YP_001012500.1| - 2.2e-13 50.3 0.0 5.4e-13 49.1 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF371) vATP-synt_AC39 PF01992.16 gi|124027181|ref|YP_001012501.1| - 5.2e-07 29.5 2.7 7.7e-07 28.9 2.7 1.3 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit HSBP1 PF06825.12 gi|124027182|ref|YP_001012502.1| - 0.00079 19.2 0.6 0.16 11.8 0.1 2.4 2 0 0 2 2 2 1 Heat shock factor binding protein 1 V-ATPase_G_2 PF16999.5 gi|124027182|ref|YP_001012502.1| - 0.0025 18.2 29.9 0.0031 17.9 29.9 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit NPV_P10 PF05531.12 gi|124027182|ref|YP_001012502.1| - 0.0059 17.0 1.2 0.0097 16.4 1.2 1.7 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein DUF4456 PF14644.6 gi|124027182|ref|YP_001012502.1| - 0.006 16.3 10.4 0.0078 15.9 10.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4456) Fib_alpha PF08702.10 gi|124027182|ref|YP_001012502.1| - 0.0081 16.4 4.5 0.0096 16.1 4.5 1.0 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family Cor1 PF04803.12 gi|124027182|ref|YP_001012502.1| - 0.01 16.1 7.2 0.013 15.8 7.2 1.2 1 0 0 1 1 1 1 Cor1/Xlr/Xmr conserved region DUF885 PF05960.11 gi|124027182|ref|YP_001012502.1| - 0.022 14.4 11.7 0.025 14.3 11.7 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) Apolipoprotein PF01442.18 gi|124027182|ref|YP_001012502.1| - 0.03 14.2 23.5 0.037 13.9 23.5 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF3220 PF11516.8 gi|124027182|ref|YP_001012502.1| - 0.034 14.4 1.6 0.56 10.4 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3120) Baculo_PEP_C PF04513.12 gi|124027182|ref|YP_001012502.1| - 0.061 13.4 3.6 0.3 11.1 3.6 1.9 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Prominin PF05478.11 gi|124027182|ref|YP_001012502.1| - 0.069 11.1 1.5 0.079 10.9 1.5 1.0 1 0 0 1 1 1 0 Prominin HD_2 PF12917.7 gi|124027182|ref|YP_001012502.1| - 0.069 12.9 8.1 0.099 12.4 4.0 2.1 1 1 1 2 2 2 0 HD containing hydrolase-like enzyme FH2 PF02181.23 gi|124027182|ref|YP_001012502.1| - 0.14 11.2 7.7 0.16 11.1 7.7 1.0 1 0 0 1 1 1 0 Formin Homology 2 Domain OmpH PF03938.14 gi|124027182|ref|YP_001012502.1| - 0.22 11.9 17.4 0.28 11.5 17.4 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HD_4 PF13328.6 gi|124027182|ref|YP_001012502.1| - 0.3 10.8 14.2 0.42 10.3 0.7 2.0 1 1 1 2 2 2 0 HD domain FdhE PF04216.12 gi|124027182|ref|YP_001012502.1| - 0.31 10.9 9.2 0.36 10.7 9.2 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DUF3160 PF11369.8 gi|124027182|ref|YP_001012502.1| - 0.33 9.3 7.8 0.37 9.2 7.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3160) Exonuc_VII_L PF02601.15 gi|124027182|ref|YP_001012502.1| - 0.34 10.4 11.2 0.43 10.1 11.2 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit FlxA PF14282.6 gi|124027182|ref|YP_001012502.1| - 0.36 10.8 8.6 0.72 9.9 8.5 1.5 1 1 0 1 1 1 0 FlxA-like protein DUF1664 PF07889.12 gi|124027182|ref|YP_001012502.1| - 0.47 10.5 5.9 2.3 8.3 5.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) TMPIT PF07851.13 gi|124027182|ref|YP_001012502.1| - 0.49 9.6 6.8 0.59 9.3 6.8 1.2 1 0 0 1 1 1 0 TMPIT-like protein YtxH PF12732.7 gi|124027182|ref|YP_001012502.1| - 0.63 10.6 7.3 24 5.6 7.3 2.2 1 1 0 1 1 1 0 YtxH-like protein V_ATPase_I PF01496.19 gi|124027182|ref|YP_001012502.1| - 0.72 7.7 8.1 0.81 7.5 8.1 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MobL PF18555.1 gi|124027182|ref|YP_001012502.1| - 0.72 9.0 5.6 0.87 8.8 5.6 1.1 1 0 0 1 1 1 0 MobL relaxases DUF3810 PF12725.7 gi|124027182|ref|YP_001012502.1| - 0.73 9.1 2.9 0.83 8.9 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Atg14 PF10186.9 gi|124027182|ref|YP_001012502.1| - 0.8 8.7 15.2 1.1 8.3 15.2 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 ApoC-I PF04691.12 gi|124027182|ref|YP_001012502.1| - 0.85 9.6 5.0 1.8 8.5 0.4 2.4 1 1 1 2 2 2 0 Apolipoprotein C-I (ApoC-1) Tweety PF04906.13 gi|124027182|ref|YP_001012502.1| - 0.96 8.0 3.8 0.82 8.3 1.3 1.8 1 1 1 2 2 2 0 Tweety APH PF01636.23 gi|124027182|ref|YP_001012502.1| - 0.97 9.3 10.0 1.2 9.0 10.0 1.1 1 0 0 1 1 1 0 Phosphotransferase enzyme family Allexi_40kDa PF05549.11 gi|124027182|ref|YP_001012502.1| - 0.99 8.9 2.8 1.1 8.8 2.8 1.2 1 0 0 1 1 1 0 Allexivirus 40kDa protein Fungal_TACC PF12709.7 gi|124027182|ref|YP_001012502.1| - 1.6 9.2 8.8 0.41 11.1 3.9 2.0 1 1 1 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins DUF4449 PF14613.6 gi|124027182|ref|YP_001012502.1| - 1.7 8.8 7.8 2 8.5 7.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4449) FapA PF03961.13 gi|124027182|ref|YP_001012502.1| - 2.1 6.8 8.9 2.3 6.7 8.9 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A HSP70 PF00012.20 gi|124027182|ref|YP_001012502.1| - 2.3 6.3 11.1 2.5 6.2 11.1 1.0 1 0 0 1 1 1 0 Hsp70 protein ACCA PF03255.14 gi|124027182|ref|YP_001012502.1| - 2.5 8.0 12.4 26 4.7 12.4 2.0 1 1 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LMBR1 PF04791.16 gi|124027182|ref|YP_001012502.1| - 2.6 6.9 7.1 2.8 6.8 7.1 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein TetR PF13972.6 gi|124027182|ref|YP_001012502.1| - 2.7 7.7 9.1 0.57 9.9 2.6 2.5 1 1 2 3 3 3 0 Bacterial transcriptional repressor DUF883 PF05957.13 gi|124027182|ref|YP_001012502.1| - 2.7 8.6 21.1 0.59 10.8 9.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Asp-B-Hydro_N PF05279.11 gi|124027182|ref|YP_001012502.1| - 2.8 7.9 14.1 4.3 7.3 10.7 1.7 1 1 1 2 2 2 0 Aspartyl beta-hydroxylase N-terminal region Folliculin PF11704.8 gi|124027182|ref|YP_001012502.1| - 3 7.7 5.5 4.2 7.2 5.5 1.4 1 1 0 1 1 1 0 Vesicle coat protein involved in Golgi to plasma membrane transport GvpL_GvpF PF06386.11 gi|124027182|ref|YP_001012502.1| - 4.3 7.2 21.2 6.3 6.6 21.2 1.3 1 1 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF CRISPR_Cse1 PF09481.10 gi|124027182|ref|YP_001012502.1| - 5.4 6.0 11.0 6.5 5.7 11.0 1.0 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) MRP-S27 PF10037.9 gi|124027182|ref|YP_001012502.1| - 5.8 5.7 13.0 7 5.4 13.0 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S27 YlqD PF11068.8 gi|124027182|ref|YP_001012502.1| - 6 7.2 14.4 66 3.9 14.4 2.0 1 1 0 1 1 1 0 YlqD protein MutS_III PF05192.18 gi|124027182|ref|YP_001012502.1| - 6.8 6.9 10.4 8 6.6 10.4 1.1 1 0 0 1 1 1 0 MutS domain III XhlA PF10779.9 gi|124027182|ref|YP_001012502.1| - 7.1 6.9 9.4 0.56 10.5 1.9 2.4 1 1 1 2 2 2 0 Haemolysin XhlA FAM76 PF16046.5 gi|124027182|ref|YP_001012502.1| - 7.2 5.9 8.8 8.8 5.6 8.8 1.2 1 0 0 1 1 1 0 FAM76 protein TnpV PF14198.6 gi|124027182|ref|YP_001012502.1| - 7.3 6.6 12.6 5.3 7.1 5.9 2.1 1 1 1 2 2 2 0 Transposon-encoded protein TnpV DUF3416 PF11896.8 gi|124027182|ref|YP_001012502.1| - 7.4 6.8 15.5 5.4 7.3 13.3 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3416) Phage_Mu_Gam PF07352.12 gi|124027182|ref|YP_001012502.1| - 9.5 6.1 16.1 1.9 8.4 6.1 2.1 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein Remorin_C PF03763.13 gi|124027182|ref|YP_001012502.1| - 9.6 6.1 21.7 2.1 8.2 12.5 2.3 1 1 1 2 2 2 0 Remorin, C-terminal region FUSC PF04632.12 gi|124027182|ref|YP_001012502.1| - 9.8 4.6 16.2 13 4.2 16.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family T2SSF PF00482.23 gi|124027182|ref|YP_001012502.1| - 9.9 6.1 15.7 31 4.6 13.3 2.3 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein F EamA PF00892.20 gi|124027183|ref|YP_001012503.1| - 1e-26 93.7 34.2 3.4e-14 53.2 10.0 2.3 2 1 0 2 2 2 2 EamA-like transporter family Neurensin PF14927.6 gi|124027183|ref|YP_001012503.1| - 0.21 11.3 2.1 0.26 11.0 0.3 2.1 2 0 0 2 2 2 0 Neurensin PSK_trans_fac PF07704.11 gi|124027184|ref|YP_001012504.1| - 5.6 7.8 11.3 3.7 8.4 0.8 3.3 3 1 0 3 3 3 0 Rv0623-like transcription factor SpoIIM PF01944.17 gi|124027185|ref|YP_001012505.1| - 2e-14 53.9 7.9 2.7e-14 53.5 7.9 1.2 1 0 0 1 1 1 1 Stage II sporulation protein M ThiC_Rad_SAM PF01964.18 gi|124027186|ref|YP_001012506.1| - 2e-169 563.8 0.0 2.3e-169 563.6 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family DUF1858 PF08984.11 gi|124027187|ref|YP_001012507.1| - 0.097 12.9 0.0 0.28 11.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1858) adh_short_C2 PF13561.6 gi|124027188|ref|YP_001012508.1| - 2.2e-57 194.3 0.8 2.7e-57 194.0 0.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|124027188|ref|YP_001012508.1| - 3.2e-56 189.9 0.2 3.8e-56 189.6 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|124027188|ref|YP_001012508.1| - 1.4e-16 60.9 0.1 1.8e-16 60.6 0.1 1.1 1 0 0 1 1 1 1 KR domain PALP PF00291.25 gi|124027188|ref|YP_001012508.1| - 0.0076 15.7 1.5 0.015 14.8 0.9 1.6 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme Epimerase PF01370.21 gi|124027188|ref|YP_001012508.1| - 0.025 14.0 1.1 0.11 11.9 1.1 1.9 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.26 gi|124027188|ref|YP_001012508.1| - 0.12 12.4 0.6 0.31 11.0 0.6 1.7 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Eno-Rase_NADH_b PF12242.8 gi|124027188|ref|YP_001012508.1| - 0.15 11.8 0.6 0.34 10.7 0.6 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PA PF02225.22 gi|124027188|ref|YP_001012508.1| - 1.3 9.1 6.3 5.8 7.0 4.8 2.3 1 1 1 2 2 2 0 PA domain TMEM238 PF15125.6 gi|124027189|ref|YP_001012509.1| - 0.023 14.9 3.5 0.55 10.5 0.4 2.1 2 0 0 2 2 2 0 TMEM238 protein family Trp_oprn_chp PF09534.10 gi|124027189|ref|YP_001012509.1| - 0.028 14.2 3.2 0.031 14.1 3.2 1.1 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Myelin_PLP PF01275.19 gi|124027189|ref|YP_001012509.1| - 0.039 13.8 0.7 0.046 13.6 0.7 1.1 1 0 0 1 1 1 0 Myelin proteolipid protein (PLP or lipophilin) DUF3040 PF11239.8 gi|124027189|ref|YP_001012509.1| - 0.59 10.4 6.5 0.61 10.4 2.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Phage_holin_3_6 PF07332.11 gi|124027189|ref|YP_001012509.1| - 0.77 9.8 12.6 3.9 7.5 5.9 2.1 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III RseC_MucC PF04246.12 gi|124027192|ref|YP_001012512.1| - 0.094 12.7 8.3 0.38 10.7 2.1 2.0 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC CitMHS PF03600.16 gi|124027192|ref|YP_001012512.1| - 0.13 11.5 8.6 0.16 11.1 8.6 1.1 1 0 0 1 1 1 0 Citrate transporter MS_channel PF00924.18 gi|124027192|ref|YP_001012512.1| - 0.15 11.6 2.5 0.21 11.1 2.5 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel DUF2304 PF10066.9 gi|124027192|ref|YP_001012512.1| - 2.1 8.6 8.4 21 5.4 8.5 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) DUF2070 PF09843.9 gi|124027192|ref|YP_001012512.1| - 2.7 6.2 7.3 3.4 5.9 7.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) bPH_5 PF10882.8 gi|124027193|ref|YP_001012513.1| - 3.8e-23 81.4 0.0 5.5e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain DUF1648 PF07853.11 gi|124027193|ref|YP_001012513.1| - 8.3e-08 31.8 0.1 8.3e-08 31.8 0.1 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) DUF4231 PF14015.6 gi|124027193|ref|YP_001012513.1| - 0.46 11.0 6.4 0.71 10.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) SDH_sah PF01972.16 gi|124027194|ref|YP_001012514.1| - 2.5e-107 358.1 0.5 3e-107 357.9 0.5 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|124027194|ref|YP_001012514.1| - 4.5e-06 26.7 0.0 1.4e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.18 gi|124027194|ref|YP_001012514.1| - 0.0008 19.4 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family S49 PepSY PF03413.19 gi|124027194|ref|YP_001012514.1| - 0.033 14.7 0.0 11 6.6 0.0 2.6 2 1 0 2 2 2 0 Peptidase propeptide and YPEB domain Dak1_2 PF13684.6 gi|124027194|ref|YP_001012514.1| - 0.059 12.4 0.4 7.5 5.5 0.0 2.0 2 0 0 2 2 2 0 Dihydroxyacetone kinase family Bmp PF02608.14 gi|124027195|ref|YP_001012515.1| - 1.1e-21 77.1 0.0 1.7e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like TAT_signal PF10518.9 gi|124027195|ref|YP_001012515.1| - 0.0022 17.7 2.9 0.0022 17.7 2.9 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF3822 PF12864.7 gi|124027195|ref|YP_001012515.1| - 0.11 11.7 0.4 2.3 7.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3822) Pribosyltran PF00156.27 gi|124027196|ref|YP_001012516.1| - 2.5e-08 33.6 0.1 4.9e-08 32.6 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|124027196|ref|YP_001012516.1| - 8.3e-06 25.8 0.4 2.4e-05 24.3 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|124027196|ref|YP_001012516.1| - 0.0025 18.1 5.2 0.02 15.3 0.2 2.9 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|124027196|ref|YP_001012516.1| - 0.0097 16.3 0.0 0.031 14.7 0.0 1.9 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.6 gi|124027196|ref|YP_001012516.1| - 0.018 14.9 0.6 0.11 12.3 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain Vault PF01505.18 gi|124027196|ref|YP_001012516.1| - 0.16 12.2 0.3 0.72 10.1 0.2 2.0 2 0 0 2 2 2 0 Major Vault Protein repeat domain DUF3243 PF11588.8 gi|124027196|ref|YP_001012516.1| - 0.17 12.2 0.0 1.7 9.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) AAA PF00004.29 gi|124027197|ref|YP_001012517.1| - 2.7e-100 332.0 0.0 1.1e-50 171.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|124027197|ref|YP_001012517.1| - 2.9e-37 126.2 1.7 3.1e-18 65.3 0.1 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|124027197|ref|YP_001012517.1| - 4.2e-29 100.6 0.5 2.9e-28 97.9 1.2 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|124027197|ref|YP_001012517.1| - 1.5e-17 63.1 0.2 3.2e-17 62.1 0.2 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|124027197|ref|YP_001012517.1| - 1.2e-15 57.6 0.1 1.9e-08 34.2 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|124027197|ref|YP_001012517.1| - 2.1e-15 57.3 0.0 2.8e-08 34.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|124027197|ref|YP_001012517.1| - 9.6e-14 52.1 0.4 1.4e-06 28.8 0.0 4.0 3 1 1 4 4 4 2 AAA ATPase domain AAA_5 PF07728.14 gi|124027197|ref|YP_001012517.1| - 4e-11 43.1 0.9 0.0003 20.8 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|124027197|ref|YP_001012517.1| - 8.9e-11 41.6 0.0 0.00028 20.2 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|124027197|ref|YP_001012517.1| - 8.9e-11 42.2 1.2 0.0011 19.3 0.1 4.2 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|124027197|ref|YP_001012517.1| - 3.9e-10 40.0 0.0 0.00027 21.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|124027197|ref|YP_001012517.1| - 4.6e-10 39.6 0.0 1.8e-05 24.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|124027197|ref|YP_001012517.1| - 1.1e-08 34.9 0.1 0.0016 18.4 0.0 2.8 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|124027197|ref|YP_001012517.1| - 1.5e-08 35.2 0.0 0.0013 19.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|124027197|ref|YP_001012517.1| - 4.6e-08 33.0 0.0 0.0099 15.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|124027197|ref|YP_001012517.1| - 1.9e-07 31.5 0.0 0.011 16.0 0.0 3.3 3 0 0 3 3 3 2 AAA domain RNA_helicase PF00910.22 gi|124027197|ref|YP_001012517.1| - 6.1e-07 29.8 0.0 0.0043 17.4 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|124027197|ref|YP_001012517.1| - 9.3e-07 28.8 0.0 0.016 15.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|124027197|ref|YP_001012517.1| - 1.2e-06 28.0 1.0 0.042 13.2 0.1 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|124027197|ref|YP_001012517.1| - 1.7e-06 27.7 2.2 0.23 11.0 0.3 4.0 3 1 0 3 3 3 2 AAA domain TsaE PF02367.17 gi|124027197|ref|YP_001012517.1| - 5.7e-06 26.3 0.0 0.05 13.6 0.0 2.7 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|124027197|ref|YP_001012517.1| - 2.9e-05 23.9 0.0 0.12 12.2 0.0 3.3 4 0 0 4 4 3 2 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|124027197|ref|YP_001012517.1| - 4.5e-05 23.5 0.0 0.01 15.8 0.0 3.0 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|124027197|ref|YP_001012517.1| - 8.2e-05 22.5 0.0 0.017 14.9 0.0 3.6 3 1 0 3 3 3 1 Bacterial dnaA protein Sigma54_activat PF00158.26 gi|124027197|ref|YP_001012517.1| - 9.1e-05 22.2 0.3 0.89 9.2 0.0 3.7 5 1 0 5 5 2 2 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|124027197|ref|YP_001012517.1| - 0.00011 21.6 0.1 0.47 9.7 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin DUF815 PF05673.13 gi|124027197|ref|YP_001012517.1| - 0.00013 21.2 0.0 0.34 10.0 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATPase PF06745.13 gi|124027197|ref|YP_001012517.1| - 0.00024 20.5 1.0 0.56 9.5 0.0 3.5 3 1 0 4 4 3 2 KaiC AAA_7 PF12775.7 gi|124027197|ref|YP_001012517.1| - 0.00026 20.6 0.0 0.76 9.3 0.0 2.5 2 1 0 2 2 2 2 P-loop containing dynein motor region ABC_tran PF00005.27 gi|124027197|ref|YP_001012517.1| - 0.0003 21.3 0.0 0.82 10.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_17 PF13207.6 gi|124027197|ref|YP_001012517.1| - 0.0013 19.1 0.0 0.78 10.2 0.0 3.2 3 0 0 3 3 2 1 AAA domain PhoH PF02562.16 gi|124027197|ref|YP_001012517.1| - 0.0014 18.1 0.9 0.25 10.8 0.1 2.5 2 0 0 2 2 2 1 PhoH-like protein Parvo_NS1 PF01057.17 gi|124027197|ref|YP_001012517.1| - 0.0015 17.7 0.1 0.47 9.5 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|124027197|ref|YP_001012517.1| - 0.0023 17.9 2.1 0.44 10.4 0.1 3.4 4 0 0 4 4 3 1 NACHT domain Rad17 PF03215.15 gi|124027197|ref|YP_001012517.1| - 0.0028 17.6 0.0 0.82 9.6 0.0 2.7 2 1 0 2 2 2 1 Rad17 P-loop domain DUF1905 PF08922.11 gi|124027197|ref|YP_001012517.1| - 0.0032 17.5 0.2 0.48 10.5 0.0 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF1905) UFD1 PF03152.14 gi|124027197|ref|YP_001012517.1| - 0.004 16.7 0.0 0.01 15.3 0.0 1.7 1 1 1 2 2 1 1 Ubiquitin fusion degradation protein UFD1 DUF2075 PF09848.9 gi|124027197|ref|YP_001012517.1| - 0.008 15.5 0.0 1.8 7.7 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|124027197|ref|YP_001012517.1| - 0.01 15.0 0.0 1.7 7.8 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|124027197|ref|YP_001012517.1| - 0.019 14.7 0.2 7 6.3 0.1 2.9 3 0 0 3 3 2 0 AAA domain AFG1_ATPase PF03969.16 gi|124027197|ref|YP_001012517.1| - 0.022 13.7 0.0 5.4 5.8 0.0 2.5 3 0 0 3 3 2 0 AFG1-like ATPase Molydop_binding PF01568.21 gi|124027197|ref|YP_001012517.1| - 0.029 14.4 0.2 0.11 12.5 0.1 2.0 1 1 0 1 1 1 0 Molydopterin dinucleotide binding domain Sigma54_activ_2 PF14532.6 gi|124027197|ref|YP_001012517.1| - 0.033 14.3 0.0 7.8 6.6 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain TniB PF05621.11 gi|124027197|ref|YP_001012517.1| - 0.043 13.2 0.0 17 4.7 0.0 3.4 4 0 0 4 4 4 0 Bacterial TniB protein AAA_11 PF13086.6 gi|124027197|ref|YP_001012517.1| - 0.054 13.3 0.0 6.8 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|124027197|ref|YP_001012517.1| - 0.057 13.8 2.7 6.3 7.1 0.2 3.2 2 1 0 3 3 3 0 AAA domain IPT PF01745.16 gi|124027197|ref|YP_001012517.1| - 0.075 12.4 0.3 13 5.0 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase SKI PF01202.22 gi|124027197|ref|YP_001012517.1| - 0.078 13.1 0.0 4.4 7.4 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase Guanylate_kin PF00625.21 gi|124027197|ref|YP_001012517.1| - 0.11 12.1 0.5 35 4.0 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase PduV-EutP PF10662.9 gi|124027197|ref|YP_001012517.1| - 0.13 12.0 0.0 9.9 5.9 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.18 gi|124027197|ref|YP_001012517.1| - 0.13 12.0 0.0 8.6 6.0 0.0 2.5 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.23 gi|124027197|ref|YP_001012517.1| - 0.2 11.8 0.0 3.9 7.6 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|124027197|ref|YP_001012517.1| - 0.21 11.5 4.4 8.6 6.2 0.0 3.7 3 1 0 4 4 3 0 NTPase AAA_6 PF12774.7 gi|124027197|ref|YP_001012517.1| - 0.22 10.5 0.0 2.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region CPSase_L_D2 PF02786.17 gi|124027199|ref|YP_001012519.1| - 2e-102 341.1 0.0 1.2e-69 234.1 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|124027199|ref|YP_001012519.1| - 3.5e-30 104.8 0.0 8.2e-30 103.7 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|124027199|ref|YP_001012519.1| - 1.3e-20 73.6 0.0 1e-10 41.4 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|124027199|ref|YP_001012519.1| - 4.9e-15 55.6 0.0 2.7e-08 33.6 0.0 2.5 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|124027199|ref|YP_001012519.1| - 6.5e-13 48.6 0.0 1e-05 25.3 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_5 PF13549.6 gi|124027199|ref|YP_001012519.1| - 2.6e-08 33.6 0.0 0.00094 18.7 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|124027199|ref|YP_001012519.1| - 4.2e-06 26.9 0.1 0.0091 16.1 0.0 3.1 2 1 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|124027199|ref|YP_001012519.1| - 0.00072 19.4 0.0 0.085 12.6 0.0 2.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|124027199|ref|YP_001012519.1| - 0.0025 17.4 0.0 0.3 10.7 0.0 3.0 3 1 0 3 3 3 1 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.10 gi|124027199|ref|YP_001012519.1| - 0.018 14.6 0.0 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 ATP-grasp domain DUF348 PF03990.14 gi|124027199|ref|YP_001012519.1| - 0.035 13.8 0.0 17 5.2 0.0 3.0 2 1 0 2 2 2 0 G5-linked-Ubiquitin-like domain Raf1_HTH PF18579.1 gi|124027199|ref|YP_001012519.1| - 0.035 13.8 0.0 0.092 12.5 0.0 1.7 1 0 0 1 1 1 0 Rubisco accumulation factor 1 helix turn helix domain CPSase_sm_chain PF00988.22 gi|124027200|ref|YP_001012520.1| - 1.1e-45 154.6 0.0 1.7e-45 154.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|124027200|ref|YP_001012520.1| - 9.3e-38 129.9 0.0 1.4e-37 129.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|124027200|ref|YP_001012520.1| - 7.1e-07 29.2 0.0 0.0024 17.6 0.0 2.5 2 0 0 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|124027200|ref|YP_001012520.1| - 0.00098 19.0 0.1 0.0018 18.1 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|124027200|ref|YP_001012520.1| - 0.15 11.6 0.0 0.41 10.2 0.0 1.6 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Lyase_1 PF00206.20 gi|124027201|ref|YP_001012521.1| - 5.6e-25 88.4 0.0 7.9e-25 87.9 0.0 1.2 1 0 0 1 1 1 1 Lyase Arginosuc_synth PF00764.19 gi|124027202|ref|YP_001012522.1| - 1e-146 489.2 0.0 1.2e-146 488.9 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|124027202|ref|YP_001012522.1| - 1.7e-05 24.5 0.1 2.9e-05 23.7 0.1 1.4 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|124027202|ref|YP_001012522.1| - 1.9e-05 23.6 0.2 3.6e-05 22.7 0.2 1.5 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|124027202|ref|YP_001012522.1| - 4.3e-05 23.4 0.1 6.4e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|124027202|ref|YP_001012522.1| - 0.011 15.8 0.1 0.023 14.7 0.0 1.6 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|124027202|ref|YP_001012522.1| - 0.1 12.4 0.1 0.18 11.6 0.1 1.5 1 1 0 1 1 1 0 PP-loop family ACT_7 PF13840.6 gi|124027203|ref|YP_001012523.1| - 2.8e-11 43.0 0.1 2.8e-11 43.0 0.1 1.7 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|124027203|ref|YP_001012523.1| - 0.0031 17.2 0.1 0.009 15.8 0.1 1.9 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|124027203|ref|YP_001012523.1| - 0.096 12.7 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 ACT domain GHL6 PF14871.6 gi|124027204|ref|YP_001012524.1| - 6.5e-35 120.3 0.0 7.7e-34 116.8 0.0 2.5 2 0 0 2 2 2 1 Hypothetical glycosyl hydrolase 6 Glyco_hydro_42M PF08532.10 gi|124027204|ref|YP_001012524.1| - 4.6e-08 32.8 0.0 9e-08 31.9 0.0 1.4 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain ThuA PF06283.11 gi|124027204|ref|YP_001012524.1| - 1.2e-07 32.2 0.0 3.9e-07 30.5 0.0 1.9 2 1 0 2 2 2 1 Trehalose utilisation GHL10 PF02638.15 gi|124027204|ref|YP_001012524.1| - 0.011 14.9 0.0 0.018 14.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase-like 10 DUF4015 PF13200.6 gi|124027204|ref|YP_001012524.1| - 0.16 11.0 0.0 0.29 10.1 0.0 1.3 1 0 0 1 1 1 0 Putative glycosyl hydrolase domain ABC_tran PF00005.27 gi|124027205|ref|YP_001012525.1| - 5.6e-33 114.4 0.0 8.6e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|124027205|ref|YP_001012525.1| - 7.9e-16 58.6 0.1 2.4e-15 57.1 0.1 1.9 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|124027205|ref|YP_001012525.1| - 4e-11 42.9 1.6 8.8e-11 41.8 0.4 2.2 2 0 0 2 2 2 1 TOBE domain TOBE PF03459.17 gi|124027205|ref|YP_001012525.1| - 9.1e-06 25.9 0.0 3.9e-05 23.9 0.0 2.2 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|124027205|ref|YP_001012525.1| - 9.9e-06 25.6 0.1 0.031 14.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|124027205|ref|YP_001012525.1| - 6.7e-05 23.4 0.1 0.00022 21.7 0.1 2.0 1 0 0 1 1 1 1 CysA C-terminal regulatory domain AAA PF00004.29 gi|124027205|ref|YP_001012525.1| - 0.00049 20.5 0.0 0.021 15.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|124027205|ref|YP_001012525.1| - 0.0012 19.3 0.0 0.002 18.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|124027205|ref|YP_001012525.1| - 0.0014 18.9 0.5 0.0051 17.1 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|124027205|ref|YP_001012525.1| - 0.0047 16.7 0.0 0.0095 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|124027205|ref|YP_001012525.1| - 0.007 16.3 0.0 0.0098 15.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 gi|124027205|ref|YP_001012525.1| - 0.02 14.4 0.0 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|124027205|ref|YP_001012525.1| - 0.036 14.0 0.0 0.12 12.3 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase DUF4131 PF13567.6 gi|124027205|ref|YP_001012525.1| - 0.059 13.0 0.1 0.18 11.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Radical_SAM PF04055.21 gi|124027205|ref|YP_001012525.1| - 0.064 13.6 0.2 1.9 8.9 0.1 2.7 2 1 0 2 2 2 0 Radical SAM superfamily AAA_5 PF07728.14 gi|124027205|ref|YP_001012525.1| - 0.067 13.2 0.1 0.19 11.7 0.1 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|124027205|ref|YP_001012525.1| - 0.081 13.2 0.0 0.17 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|124027205|ref|YP_001012525.1| - 0.084 12.4 0.1 0.95 9.0 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|124027205|ref|YP_001012525.1| - 0.11 12.9 0.1 0.17 12.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|124027205|ref|YP_001012525.1| - 0.13 12.0 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|124027205|ref|YP_001012525.1| - 0.26 11.8 0.0 0.46 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|124027206|ref|YP_001012526.1| - 3.8e-18 65.9 24.9 3.8e-18 65.9 24.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|124027207|ref|YP_001012527.1| - 1.3e-08 34.8 26.2 1.3e-08 34.8 26.2 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SKG6 PF08693.10 gi|124027207|ref|YP_001012527.1| - 0.2 11.1 0.1 0.2 11.1 0.1 2.5 3 0 0 3 3 3 0 Transmembrane alpha-helix domain SBP_bac_1 PF01547.25 gi|124027208|ref|YP_001012528.1| - 2.1e-37 129.8 8.1 2.8e-37 129.3 8.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|124027208|ref|YP_001012528.1| - 5.5e-35 121.6 0.3 7.2e-35 121.2 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|124027208|ref|YP_001012528.1| - 7.1e-05 22.3 0.1 0.00088 18.8 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|124027208|ref|YP_001012528.1| - 0.0057 16.4 0.0 0.052 13.3 0.0 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein CwsA PF10814.8 gi|124027208|ref|YP_001012528.1| - 0.12 12.6 0.2 0.24 11.6 0.2 1.4 1 0 0 1 1 1 0 Cell wall synthesis protein CwsA Ldh_2 PF02615.14 gi|124027209|ref|YP_001012529.1| - 2e-119 398.6 0.1 2.3e-119 398.5 0.1 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase F-box-like PF12937.7 gi|124027210|ref|YP_001012530.1| - 0.089 12.7 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 F-box-like cobW PF02492.19 gi|124027211|ref|YP_001012531.1| - 7.4e-24 84.3 0.0 9.4e-24 84.0 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|124027211|ref|YP_001012531.1| - 3.5e-07 29.5 0.0 0.0014 17.6 0.0 2.1 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|124027211|ref|YP_001012531.1| - 6.4e-07 29.4 0.0 0.0058 16.5 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|124027211|ref|YP_001012531.1| - 0.00023 20.8 0.2 0.025 14.1 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_19 PF13245.6 gi|124027211|ref|YP_001012531.1| - 0.0015 18.9 0.0 0.0022 18.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|124027211|ref|YP_001012531.1| - 0.0054 17.2 0.0 0.011 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Ras PF00071.22 gi|124027211|ref|YP_001012531.1| - 0.017 14.7 0.0 0.24 11.0 0.0 2.2 1 1 0 1 1 1 0 Ras family AAA_28 PF13521.6 gi|124027211|ref|YP_001012531.1| - 0.019 15.2 0.2 0.15 12.3 0.1 2.1 1 1 1 2 2 2 0 AAA domain Roc PF08477.13 gi|124027211|ref|YP_001012531.1| - 0.022 15.0 0.1 0.08 13.2 0.0 2.0 2 1 1 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 gi|124027211|ref|YP_001012531.1| - 0.034 14.1 0.0 0.32 11.0 0.0 2.2 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain AAA_18 PF13238.6 gi|124027211|ref|YP_001012531.1| - 0.039 14.5 0.0 0.069 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain UvrD-helicase PF00580.21 gi|124027211|ref|YP_001012531.1| - 0.067 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain MnmE_helical PF12631.7 gi|124027211|ref|YP_001012531.1| - 0.069 13.3 0.0 0.089 13.0 0.0 1.2 1 0 0 1 1 1 0 MnmE helical domain Viral_helicase1 PF01443.18 gi|124027211|ref|YP_001012531.1| - 0.095 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|124027211|ref|YP_001012531.1| - 0.11 12.7 0.0 0.23 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain Arf PF00025.21 gi|124027211|ref|YP_001012531.1| - 0.13 11.7 0.0 5.3 6.5 0.0 2.2 2 0 0 2 2 2 0 ADP-ribosylation factor family Lipase_GDSL_2 PF13472.6 gi|124027211|ref|YP_001012531.1| - 0.14 12.6 0.0 1 9.7 0.0 2.0 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family AAA_33 PF13671.6 gi|124027211|ref|YP_001012531.1| - 0.15 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|124027211|ref|YP_001012531.1| - 0.16 11.7 0.0 1.3 8.7 0.0 2.3 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein HypA PF01155.19 gi|124027212|ref|YP_001012532.1| - 4.6e-31 107.1 0.0 5.3e-31 106.9 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 gi|124027212|ref|YP_001012532.1| - 6.4e-05 23.5 0.6 0.33 11.7 0.0 2.3 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 gi|124027212|ref|YP_001012532.1| - 0.00039 20.3 1.2 0.2 11.6 0.2 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-IS66 PF13005.7 gi|124027212|ref|YP_001012532.1| - 0.00095 19.5 2.8 0.085 13.3 0.6 2.7 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.12 gi|124027212|ref|YP_001012532.1| - 0.0012 18.3 0.5 0.59 9.7 0.0 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|124027212|ref|YP_001012532.1| - 0.0036 17.2 1.7 0.12 12.3 0.2 2.4 2 0 0 2 2 2 1 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|124027212|ref|YP_001012532.1| - 0.0043 16.7 2.1 0.81 9.5 0.4 2.3 2 0 0 2 2 2 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|124027212|ref|YP_001012532.1| - 0.0046 16.9 1.4 0.088 12.8 0.2 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.6 gi|124027212|ref|YP_001012532.1| - 0.0055 16.6 1.0 1.2 9.1 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|124027212|ref|YP_001012532.1| - 0.007 16.7 0.2 2.4 8.6 0.0 2.2 2 0 0 2 2 2 1 Restriction alleviation protein Lar zf-Dof PF02701.15 gi|124027212|ref|YP_001012532.1| - 0.011 15.9 0.2 5.3 7.3 0.0 2.2 2 0 0 2 2 2 0 Dof domain, zinc finger Zn-ribbon_8 PF09723.10 gi|124027212|ref|YP_001012532.1| - 0.011 15.8 2.7 0.15 12.2 2.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|124027212|ref|YP_001012532.1| - 0.011 15.7 7.6 0.021 14.9 2.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF3797 PF12677.7 gi|124027212|ref|YP_001012532.1| - 0.012 15.5 0.1 0.36 10.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.6 gi|124027212|ref|YP_001012532.1| - 0.013 14.9 3.5 2.2 7.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|124027212|ref|YP_001012532.1| - 0.017 14.8 4.6 0.28 11.0 0.1 2.5 2 0 0 2 2 2 0 InsA N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|124027212|ref|YP_001012532.1| - 0.018 15.0 0.2 1.9 8.5 0.0 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ZPR1 PF03367.13 gi|124027212|ref|YP_001012532.1| - 0.021 14.7 0.4 1.2 8.9 0.0 2.2 1 1 1 2 2 2 0 ZPR1 zinc-finger domain Zn_ribbon_SprT PF17283.2 gi|124027212|ref|YP_001012532.1| - 0.041 13.8 0.2 8.3 6.4 0.0 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|124027212|ref|YP_001012532.1| - 0.057 13.3 0.2 0.057 13.3 0.2 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Elf1 PF05129.13 gi|124027212|ref|YP_001012532.1| - 0.058 13.4 0.0 3.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.6 gi|124027212|ref|YP_001012532.1| - 0.063 13.1 0.3 9.5 6.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|124027212|ref|YP_001012532.1| - 0.066 13.5 0.9 15 5.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon TFIIS_C PF01096.18 gi|124027212|ref|YP_001012532.1| - 0.07 13.0 2.4 11 6.0 0.3 2.8 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) DUF35_N PF12172.8 gi|124027212|ref|YP_001012532.1| - 0.074 13.0 4.3 0.86 9.6 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_10 PF10058.9 gi|124027212|ref|YP_001012532.1| - 0.09 12.5 0.5 1.6 8.5 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-RRN7 PF11781.8 gi|124027212|ref|YP_001012532.1| - 0.091 12.5 2.0 2.8 7.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-Mss51 PF13824.6 gi|124027212|ref|YP_001012532.1| - 0.099 12.8 0.2 2.8 8.1 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_RNApol_7kD PF03604.13 gi|124027212|ref|YP_001012532.1| - 0.1 12.3 1.4 6.3 6.6 0.1 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-TFIIB PF13453.6 gi|124027212|ref|YP_001012532.1| - 0.2 11.0 1.8 1.6 8.1 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger CpXC PF14353.6 gi|124027212|ref|YP_001012532.1| - 0.23 11.5 0.7 0.85 9.7 0.7 1.8 1 1 1 2 2 2 0 CpXC protein zf-NADH-PPase PF09297.11 gi|124027212|ref|YP_001012532.1| - 0.43 10.3 3.8 8.9 6.1 0.4 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf_C2H2_10 PF18414.1 gi|124027212|ref|YP_001012532.1| - 0.92 9.1 3.7 2.1 7.9 0.6 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger Ogr_Delta PF04606.12 gi|124027212|ref|YP_001012532.1| - 2.2 8.3 4.6 10 6.2 0.3 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Rubredoxin_2 PF18073.1 gi|124027212|ref|YP_001012532.1| - 2.3 8.0 6.5 6.5 6.6 0.8 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain RHH_1 PF01402.21 gi|124027213|ref|YP_001012533.1| - 1.9e-07 30.8 0.0 6.2e-07 29.1 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|124027213|ref|YP_001012533.1| - 6.1e-05 23.1 0.0 8.9e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_3 PF12651.7 gi|124027213|ref|YP_001012533.1| - 0.00073 19.4 0.0 0.0019 18.1 0.0 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix domain PadR PF03551.14 gi|124027213|ref|YP_001012533.1| - 0.033 14.1 0.2 0.12 12.4 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family RHH_5 PF07878.11 gi|124027213|ref|YP_001012533.1| - 0.038 13.9 0.6 0.094 12.6 0.0 2.0 3 0 0 3 3 3 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Pyr_redox_2 PF07992.14 gi|124027214|ref|YP_001012534.1| - 2.9e-33 115.4 0.1 3.8e-33 115.0 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|124027214|ref|YP_001012534.1| - 3.6e-13 49.9 0.8 6.9e-09 36.2 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Peptidase_C26 PF07722.13 gi|124027214|ref|YP_001012534.1| - 0.011 15.5 0.0 0.18 11.6 0.0 2.1 2 0 0 2 2 2 0 Peptidase C26 NAD_binding_9 PF13454.6 gi|124027214|ref|YP_001012534.1| - 0.02 14.9 0.4 0.76 9.8 0.1 2.6 2 1 0 2 2 2 0 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|124027214|ref|YP_001012534.1| - 0.24 10.5 0.1 0.77 8.8 0.0 1.8 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) HTH_IclR PF09339.10 gi|124027215|ref|YP_001012535.1| - 6.3e-06 25.9 0.2 1.8e-05 24.4 0.1 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|124027215|ref|YP_001012535.1| - 1.4e-05 24.9 0.2 3.7e-05 23.5 0.2 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|124027215|ref|YP_001012535.1| - 0.00014 21.7 0.5 0.00031 20.6 0.5 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|124027215|ref|YP_001012535.1| - 0.00068 19.7 0.1 0.0074 16.3 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|124027215|ref|YP_001012535.1| - 0.0018 18.0 0.1 0.0038 17.0 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|124027215|ref|YP_001012535.1| - 0.0022 17.8 0.1 0.0052 16.6 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|124027215|ref|YP_001012535.1| - 0.0054 16.7 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix BRI3BP PF14965.6 gi|124027215|ref|YP_001012535.1| - 0.029 13.9 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 Negative regulator of p53/TP53 HTH_AsnC-type PF13404.6 gi|124027215|ref|YP_001012535.1| - 0.03 14.2 0.2 1.3 8.9 0.0 3.0 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain FeoC PF09012.10 gi|124027215|ref|YP_001012535.1| - 0.03 14.4 0.1 0.071 13.2 0.1 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_24 PF13412.6 gi|124027215|ref|YP_001012535.1| - 0.16 11.6 0.2 0.82 9.3 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding EMG1 PF03587.14 gi|124027216|ref|YP_001012536.1| - 5.7e-42 143.6 0.0 6.5e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase PQQ_3 PF13570.6 gi|124027216|ref|YP_001012536.1| - 0.075 13.5 0.0 1.5 9.4 0.0 2.4 2 0 0 2 2 2 0 PQQ-like domain Lactamase_B PF00753.27 gi|124027217|ref|YP_001012537.1| - 2.3e-20 73.4 7.4 3.1e-20 73.0 7.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|124027217|ref|YP_001012537.1| - 4.4e-07 29.6 0.8 7.4e-07 28.9 0.8 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain GDPD PF03009.17 gi|124027219|ref|YP_001012539.1| - 1.4e-05 25.0 0.0 3.6e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family OrfB_Zn_ribbon PF07282.11 gi|124027220|ref|YP_001012540.1| - 0.024 14.5 0.1 0.062 13.2 0.0 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain PIN PF01850.21 gi|124027221|ref|YP_001012541.1| - 1.5e-14 54.5 1.4 1.9e-14 54.2 1.4 1.1 1 0 0 1 1 1 1 PIN domain DUF998 PF06197.13 gi|124027221|ref|YP_001012541.1| - 0.0027 17.4 2.2 0.0033 17.0 2.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) BPD_transp_1 PF00528.22 gi|124027222|ref|YP_001012542.1| - 0.0005 19.9 12.5 0.0005 19.9 12.5 4.0 3 1 0 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|124027223|ref|YP_001012543.1| - 7.4e-12 45.8 0.0 1.1e-11 45.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|124027223|ref|YP_001012543.1| - 2.5e-11 43.8 0.0 5.3e-11 42.7 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|124027223|ref|YP_001012543.1| - 1e-10 41.9 0.0 1.5e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|124027223|ref|YP_001012543.1| - 1.2e-08 34.7 0.1 1.1e-07 31.6 0.1 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Radical_SAM PF04055.21 gi|124027224|ref|YP_001012544.1| - 1.2e-15 58.3 0.0 4.1e-15 56.6 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|124027224|ref|YP_001012544.1| - 5.2e-07 30.0 0.0 9.4e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|124027224|ref|YP_001012544.1| - 0.0023 18.1 0.0 0.0042 17.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain P5CR_dimer PF14748.6 gi|124027225|ref|YP_001012545.1| - 4.4e-30 104.0 0.1 6.5e-30 103.4 0.1 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|124027225|ref|YP_001012545.1| - 3.9e-09 37.0 0.0 8.8e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pilin_N PF07790.11 gi|124027226|ref|YP_001012546.1| - 0.00021 22.1 4.0 0.00031 21.6 1.6 2.1 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Ribosomal_S9 PF00380.19 gi|124027226|ref|YP_001012546.1| - 0.074 13.6 0.1 0.13 12.8 0.1 1.6 1 1 0 1 1 1 0 Ribosomal protein S9/S16 DUF2749 PF10907.8 gi|124027226|ref|YP_001012546.1| - 2.4 8.4 7.9 2.4 8.4 3.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) UPF0020 PF01170.18 gi|124027227|ref|YP_001012547.1| - 6.7e-29 101.0 0.0 9.1e-28 97.3 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|124027227|ref|YP_001012547.1| - 2.1e-05 25.1 0.0 0.00039 21.0 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|124027227|ref|YP_001012547.1| - 0.00055 19.6 0.0 0.0008 19.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|124027227|ref|YP_001012547.1| - 0.001 19.7 0.0 0.0048 17.6 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|124027227|ref|YP_001012547.1| - 0.077 12.7 0.0 6 6.5 0.0 2.2 2 0 0 2 2 2 0 DNA methylase PIN PF01850.21 gi|124027228|ref|YP_001012548.1| - 7e-20 71.7 0.3 8.3e-20 71.5 0.3 1.0 1 0 0 1 1 1 1 PIN domain DUF4194 PF13835.6 gi|124027228|ref|YP_001012548.1| - 0.065 13.0 0.1 0.076 12.7 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4194) DUF790 PF05626.11 gi|124027228|ref|YP_001012548.1| - 0.071 11.8 0.0 0.077 11.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF790) PIN_3 PF13470.6 gi|124027228|ref|YP_001012548.1| - 0.16 12.8 0.7 0.25 12.1 0.7 1.4 1 1 0 1 1 1 0 PIN domain MazE_antitoxin PF04014.18 gi|124027229|ref|YP_001012549.1| - 1.7e-12 46.9 0.5 2.5e-12 46.4 0.5 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|124027229|ref|YP_001012549.1| - 0.001 19.4 0.0 0.0011 19.3 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin 2CSK_N PF08521.10 gi|124027229|ref|YP_001012549.1| - 0.0045 17.1 0.0 0.0047 17.0 0.0 1.1 1 0 0 1 1 1 1 Two-component sensor kinase N-terminal ABC_tran PF00005.27 gi|124027230|ref|YP_001012550.1| - 1.7e-27 96.6 0.0 2.2e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027230|ref|YP_001012550.1| - 4.2e-13 49.8 0.1 5.9e-06 26.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027230|ref|YP_001012550.1| - 2.5e-07 30.4 0.0 0.0012 18.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|124027230|ref|YP_001012550.1| - 0.00037 20.2 0.1 0.0011 18.6 0.1 1.8 1 1 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|124027230|ref|YP_001012550.1| - 0.00056 20.1 0.0 0.015 15.6 0.0 2.7 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit SRP54 PF00448.22 gi|124027230|ref|YP_001012550.1| - 0.00089 18.9 0.0 0.0051 16.5 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|124027230|ref|YP_001012550.1| - 0.00096 19.0 0.0 0.23 11.1 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|124027230|ref|YP_001012550.1| - 0.0013 19.0 0.0 0.0027 18.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|124027230|ref|YP_001012550.1| - 0.0015 18.9 1.2 0.0032 17.9 1.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|124027230|ref|YP_001012550.1| - 0.0058 17.2 0.1 0.0085 16.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|124027230|ref|YP_001012550.1| - 0.012 15.7 0.0 0.027 14.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|124027230|ref|YP_001012550.1| - 0.018 14.7 0.1 0.046 13.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|124027230|ref|YP_001012550.1| - 0.019 14.5 1.0 0.032 13.8 1.0 1.6 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|124027230|ref|YP_001012550.1| - 0.055 11.0 0.0 0.064 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_14 PF13173.6 gi|124027230|ref|YP_001012550.1| - 0.12 12.5 0.0 0.33 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|124027230|ref|YP_001012550.1| - 0.14 12.1 0.9 0.34 10.8 0.1 1.9 2 1 0 2 2 2 0 NACHT domain cobW PF02492.19 gi|124027230|ref|YP_001012550.1| - 0.15 11.6 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|124027230|ref|YP_001012550.1| - 0.15 11.3 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ABC_ATPase PF09818.9 gi|124027230|ref|YP_001012550.1| - 0.21 10.4 0.1 0.43 9.3 0.0 1.4 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|124027230|ref|YP_001012550.1| - 0.24 11.1 0.0 0.34 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|124027231|ref|YP_001012551.1| - 8.7e-11 41.9 15.8 1.1e-10 41.6 15.8 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component AIRS PF00586.24 gi|124027231|ref|YP_001012551.1| - 0.12 13.0 1.3 0.27 11.9 1.1 1.7 1 1 0 1 1 1 0 AIR synthase related protein, N-terminal domain PBP_like_2 PF12849.7 gi|124027232|ref|YP_001012552.1| - 2e-20 73.6 0.0 2.7e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|124027232|ref|YP_001012552.1| - 2.5e-07 30.7 0.0 5.2e-06 26.4 0.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|124027232|ref|YP_001012552.1| - 8.3e-06 26.0 0.0 5.6e-05 23.2 0.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|124027232|ref|YP_001012552.1| - 1e-05 24.8 0.0 1.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.20 gi|124027232|ref|YP_001012552.1| - 0.0027 17.1 0.0 0.0049 16.3 0.0 1.5 2 0 0 2 2 2 1 LysR substrate binding domain PBP_like PF12727.7 gi|124027233|ref|YP_001012553.1| - 4e-48 163.1 0.0 5.6e-48 162.6 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.27 gi|124027233|ref|YP_001012553.1| - 1.3e-14 53.9 0.5 4e-14 52.3 0.5 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family RNA_binding PF01877.17 gi|124027234|ref|YP_001012554.1| - 1e-11 45.1 0.1 1.7e-11 44.4 0.1 1.3 1 1 0 1 1 1 1 RNA binding Ax_dynein_light PF10211.9 gi|124027234|ref|YP_001012554.1| - 0.025 14.5 0.0 2.6 7.9 0.0 2.1 1 1 1 2 2 2 0 Axonemal dynein light chain AAA_17 PF13207.6 gi|124027235|ref|YP_001012555.1| - 2.3e-17 63.7 0.0 3.1e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|124027235|ref|YP_001012555.1| - 2.9e-13 50.5 0.0 5.9e-13 49.5 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|124027235|ref|YP_001012555.1| - 4.6e-09 36.6 0.0 6.8e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|124027235|ref|YP_001012555.1| - 0.0054 16.0 0.1 0.01 15.1 0.1 1.6 1 1 0 1 1 1 1 Zeta toxin PGM_PMM_II PF02879.16 gi|124027235|ref|YP_001012555.1| - 0.0077 16.8 0.0 0.023 15.3 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NB-ARC PF00931.22 gi|124027235|ref|YP_001012555.1| - 0.036 13.2 0.2 0.066 12.4 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|124027235|ref|YP_001012555.1| - 0.039 14.3 1.3 0.23 11.8 1.3 2.4 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|124027235|ref|YP_001012555.1| - 0.12 11.7 0.2 0.15 11.4 0.2 1.3 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI Flu_B_M2 PF04772.12 gi|124027235|ref|YP_001012555.1| - 0.13 12.5 0.1 0.37 11.0 0.0 1.7 2 0 0 2 2 2 0 Influenza B matrix protein 2 (BM2) DUF2075 PF09848.9 gi|124027235|ref|YP_001012555.1| - 0.21 10.8 0.0 0.29 10.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MgpC PF05220.12 gi|124027239|ref|YP_001012559.1| - 0.065 12.6 0.2 0.099 12.0 0.2 1.2 1 0 0 1 1 1 0 MgpC protein precursor PPS_PS PF02006.16 gi|124027240|ref|YP_001012560.1| - 4.9e-78 260.7 0.5 6e-78 260.4 0.5 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase TPP_enzyme_M PF00205.22 gi|124027240|ref|YP_001012560.1| - 0.014 15.1 1.5 0.027 14.2 0.4 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain HicB_lk_antitox PF15919.5 gi|124027240|ref|YP_001012560.1| - 0.065 13.4 1.3 0.068 13.3 0.1 1.6 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system PriA_C PF18074.1 gi|124027240|ref|YP_001012560.1| - 0.085 13.7 0.1 11 6.9 0.1 2.7 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain CN_hydrolase PF00795.22 gi|124027241|ref|YP_001012561.1| - 1.6e-26 93.2 0.0 2e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Methyltransf_11 PF08241.12 gi|124027242|ref|YP_001012563.1| - 1e-10 42.1 0.0 1.6e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|124027242|ref|YP_001012563.1| - 1.1e-06 28.5 0.0 1.7e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|124027242|ref|YP_001012563.1| - 1.5e-05 25.6 0.0 2.5e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|124027242|ref|YP_001012563.1| - 0.049 14.4 0.0 0.11 13.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain DUF87 PF01935.17 gi|124027244|ref|YP_001012564.1| - 4.4e-32 112.0 0.0 1.1e-30 107.4 0.0 2.3 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|124027244|ref|YP_001012564.1| - 4.6e-09 35.4 0.3 0.0011 17.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|124027244|ref|YP_001012564.1| - 5.9e-06 25.4 0.0 2.7e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 gi|124027244|ref|YP_001012564.1| - 2.1e-05 23.5 0.0 3.2e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer ResIII PF04851.15 gi|124027244|ref|YP_001012564.1| - 3.1e-05 24.1 0.0 0.00013 22.0 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HAS-barrel PF09378.10 gi|124027244|ref|YP_001012564.1| - 0.0036 17.4 0.7 0.013 15.7 0.1 2.4 2 0 0 2 2 2 1 HAS barrel domain DEAD PF00270.29 gi|124027244|ref|YP_001012564.1| - 0.0041 16.9 0.0 0.014 15.2 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA PF00004.29 gi|124027244|ref|YP_001012564.1| - 0.011 16.2 0.2 0.081 13.3 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.7 gi|124027244|ref|YP_001012564.1| - 0.012 14.5 0.0 0.026 13.5 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|124027244|ref|YP_001012564.1| - 0.015 14.7 0.0 2.2 7.5 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|124027244|ref|YP_001012564.1| - 0.051 13.8 0.0 2.9 8.2 0.0 2.6 2 1 0 2 2 2 0 AAA domain Radical_SAM PF04055.21 gi|124027245|ref|YP_001012565.1| - 5.4e-15 56.2 0.1 7.8e-14 52.4 0.0 2.4 2 1 0 2 2 2 1 Radical SAM superfamily RsbU_N PF08673.10 gi|124027245|ref|YP_001012565.1| - 0.032 14.3 0.0 0.097 12.8 0.0 1.8 1 0 0 1 1 1 0 Phosphoserine phosphatase RsbU, N-terminal domain DUF364 PF04016.12 gi|124027246|ref|YP_001012566.1| - 3.5e-30 104.5 0.0 4.6e-30 104.1 0.0 1.1 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|124027246|ref|YP_001012566.1| - 3.5e-09 36.8 0.2 7.3e-09 35.7 0.2 1.5 1 0 0 1 1 1 1 Putative heavy-metal chelation AdoHcyase_NAD PF00670.21 gi|124027246|ref|YP_001012566.1| - 0.0012 18.9 0.1 0.0019 18.3 0.1 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MS_channel PF00924.18 gi|124027247|ref|YP_001012567.1| - 1.2e-49 168.6 0.0 1.9e-49 168.0 0.0 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|124027247|ref|YP_001012567.1| - 0.0002 21.2 0.0 0.00063 19.7 0.0 1.8 1 0 0 1 1 1 1 Conserved TM helix DUF3464 PF11947.8 gi|124027247|ref|YP_001012567.1| - 0.019 14.7 5.4 0.034 13.9 5.4 1.4 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 HAS-barrel PF09378.10 gi|124027247|ref|YP_001012567.1| - 0.051 13.7 0.0 0.16 12.1 0.0 2.0 1 1 0 1 1 1 0 HAS barrel domain DUF4083 PF13314.6 gi|124027247|ref|YP_001012567.1| - 2.9 7.9 7.6 0.41 10.6 2.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) AFOR_C PF01314.18 gi|124027248|ref|YP_001012568.1| - 3.8e-115 384.9 0.0 4.5e-115 384.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|124027248|ref|YP_001012568.1| - 3.5e-72 242.4 0.1 5e-72 241.9 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Metallophos PF00149.28 gi|124027249|ref|YP_001012569.1| - 3.5e-20 73.4 0.0 4.5e-20 73.0 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|124027249|ref|YP_001012569.1| - 1.1e-05 25.8 0.0 1.7e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Apolipoprotein PF01442.18 gi|124027251|ref|YP_001012571.1| - 0.00093 19.1 23.5 0.05 13.5 13.5 2.7 2 1 0 2 2 2 1 Apolipoprotein A1/A4/E domain OmpH PF03938.14 gi|124027251|ref|YP_001012571.1| - 0.023 15.0 10.3 0.38 11.1 10.3 2.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Baculo_PEP_C PF04513.12 gi|124027251|ref|YP_001012571.1| - 0.035 14.2 0.7 6.2 6.9 0.0 2.9 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Sec8_exocyst PF04048.14 gi|124027251|ref|YP_001012571.1| - 0.046 13.6 0.5 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain DUF4407 PF14362.6 gi|124027251|ref|YP_001012571.1| - 0.077 12.3 5.2 0.11 11.8 5.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Exonuc_VII_L PF02601.15 gi|124027251|ref|YP_001012571.1| - 0.099 12.2 6.5 0.16 11.5 6.5 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit Prominin PF05478.11 gi|124027251|ref|YP_001012571.1| - 0.12 10.4 1.2 0.18 9.7 1.2 1.3 1 0 0 1 1 1 0 Prominin Mst1_SARAH PF11629.8 gi|124027251|ref|YP_001012571.1| - 0.14 12.3 7.0 0.41 10.8 3.5 3.3 2 1 0 2 2 2 0 C terminal SARAH domain of Mst1 HIP1_clath_bdg PF16515.5 gi|124027251|ref|YP_001012571.1| - 0.15 12.6 15.7 0.21 12.2 8.8 3.0 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 PMC2NT PF08066.12 gi|124027251|ref|YP_001012571.1| - 0.16 12.7 0.9 1.1 10.0 0.4 2.5 2 0 0 2 2 2 0 PMC2NT (NUC016) domain TMPIT PF07851.13 gi|124027251|ref|YP_001012571.1| - 0.22 10.7 2.1 0.25 10.6 0.6 1.7 1 1 0 1 1 1 0 TMPIT-like protein DUF948 PF06103.11 gi|124027251|ref|YP_001012571.1| - 0.24 11.7 5.4 2.9 8.2 0.2 3.4 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) DUF1690 PF07956.11 gi|124027251|ref|YP_001012571.1| - 0.27 11.7 7.4 0.38 11.2 6.2 1.8 1 1 0 1 1 1 0 Protein of Unknown function (DUF1690) HEPN_AbiU2 PF18734.1 gi|124027251|ref|YP_001012571.1| - 0.27 10.7 9.0 0.3 10.6 7.0 2.1 1 1 0 1 1 1 0 AbiU2 ERM PF00769.19 gi|124027251|ref|YP_001012571.1| - 0.28 10.9 20.8 0.057 13.2 16.8 1.7 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Phage_Mu_Gam PF07352.12 gi|124027251|ref|YP_001012571.1| - 0.32 10.9 7.0 3.5 7.5 2.5 2.5 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein CorA PF01544.18 gi|124027251|ref|YP_001012571.1| - 0.37 10.1 11.3 0.24 10.7 8.7 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Caprin-1_dimer PF18293.1 gi|124027251|ref|YP_001012571.1| - 0.48 10.9 4.2 0.4 11.2 0.2 2.6 3 1 0 3 3 2 0 Caprin-1 dimerization domain Fzo_mitofusin PF04799.13 gi|124027251|ref|YP_001012571.1| - 0.8 9.2 8.8 0.8 9.2 4.6 2.3 1 1 1 2 2 2 0 fzo-like conserved region DUF2252 PF10009.9 gi|124027251|ref|YP_001012571.1| - 0.87 8.6 6.3 1.4 7.9 6.3 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) DUF4709 PF15821.5 gi|124027251|ref|YP_001012571.1| - 0.93 9.8 8.7 0.95 9.8 2.7 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4709) FAM76 PF16046.5 gi|124027251|ref|YP_001012571.1| - 1.1 8.6 6.5 1.4 8.2 6.5 1.2 1 0 0 1 1 1 0 FAM76 protein DUF4315 PF14193.6 gi|124027251|ref|YP_001012571.1| - 1.2 9.2 12.8 0.53 10.3 9.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4315) Occludin_ELL PF07303.13 gi|124027251|ref|YP_001012571.1| - 2.7 8.8 6.2 0.7 10.6 0.7 2.6 1 1 2 3 3 3 0 Occludin homology domain PIN_8 PF18476.1 gi|124027251|ref|YP_001012571.1| - 3 7.6 8.4 3.7 7.3 4.8 2.0 1 1 1 2 2 2 0 PIN like domain Rho_Binding PF08912.11 gi|124027251|ref|YP_001012571.1| - 3.2 8.6 10.1 4.9 8.0 8.1 2.3 1 1 1 2 2 2 0 Rho Binding ING PF12998.7 gi|124027251|ref|YP_001012571.1| - 4.6 7.9 9.5 9.9 6.8 3.9 2.8 1 1 2 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding FAM184 PF15665.5 gi|124027251|ref|YP_001012571.1| - 5.2 6.8 15.3 4.7 6.9 11.9 2.0 1 1 1 2 2 2 0 Family with sequence similarity 184, A and B TrwC PF08751.11 gi|124027251|ref|YP_001012571.1| - 5.7 6.4 9.2 10 5.5 9.2 1.5 1 0 0 1 1 1 0 TrwC relaxase DUF848 PF05852.11 gi|124027251|ref|YP_001012571.1| - 5.8 7.0 11.9 10 6.2 6.8 2.8 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) YlqD PF11068.8 gi|124027251|ref|YP_001012571.1| - 6.1 7.2 11.1 24 5.3 0.4 2.3 1 1 1 2 2 2 0 YlqD protein DUF2721 PF11026.8 gi|124027251|ref|YP_001012571.1| - 6.9 6.6 14.1 0.032 14.1 3.7 2.3 3 0 0 3 3 2 0 Protein of unknown function (DUF2721) SlyX PF04102.12 gi|124027251|ref|YP_001012571.1| - 6.9 7.4 12.6 25 5.6 3.7 3.8 4 1 1 5 5 3 0 SlyX Tho2 PF11262.8 gi|124027251|ref|YP_001012571.1| - 8.4 5.5 6.2 2 7.5 3.1 1.5 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 DHHA1 PF02272.19 gi|124027252|ref|YP_001012572.1| - 0.00073 20.0 0.1 0.0014 19.0 0.1 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|124027252|ref|YP_001012572.1| - 0.09 13.0 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 DHH family DUF432 PF04254.13 gi|124027253|ref|YP_001012573.1| - 5.4e-21 75.0 0.0 7.4e-21 74.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.18 gi|124027254|ref|YP_001012574.1| - 1.4e-59 201.2 0.2 1.9e-59 200.7 0.2 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF5518 PF17647.1 gi|124027255|ref|YP_001012575.1| - 2.9e-07 30.7 42.8 3.5e-07 30.4 42.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF5455 PF17537.2 gi|124027255|ref|YP_001012575.1| - 6 7.3 11.3 1.8 9.0 5.7 2.3 2 1 0 2 2 2 0 Family of unknown function (DUF5455) AAA PF00004.29 gi|124027256|ref|YP_001012576.1| - 0.02 15.3 0.0 0.07 13.5 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|124027256|ref|YP_001012576.1| - 0.036 14.3 0.7 0.35 11.1 0.0 2.8 2 1 0 2 2 2 0 AAA domain BLOC1_2 PF10046.9 gi|124027256|ref|YP_001012576.1| - 0.044 14.1 1.2 1.3 9.4 0.5 2.8 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 cobW PF02492.19 gi|124027256|ref|YP_001012576.1| - 0.048 13.3 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF2791 PF10923.8 gi|124027256|ref|YP_001012576.1| - 0.077 11.8 0.0 0.2 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) Baculo_PEP_C PF04513.12 gi|124027256|ref|YP_001012576.1| - 0.5 10.4 1.2 17 5.4 1.2 2.9 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus HAUS-augmin3 PF14932.6 gi|124027256|ref|YP_001012576.1| - 0.62 9.6 2.0 1.1 8.8 2.0 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Nterm_IS4 PF13006.7 gi|124027257|ref|YP_001012577.1| - 0.022 14.9 2.4 0.46 10.7 0.1 3.1 3 1 1 4 4 4 0 Insertion element 4 transposase N-terminal DUF4507 PF14964.6 gi|124027257|ref|YP_001012577.1| - 0.023 13.6 0.2 0.033 13.1 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4507) MCPsignal PF00015.21 gi|124027257|ref|YP_001012577.1| - 0.049 13.4 2.4 0.36 10.6 0.4 2.6 3 0 0 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain CheZ PF04344.13 gi|124027257|ref|YP_001012577.1| - 0.057 13.3 0.2 0.89 9.4 0.0 2.6 2 1 1 3 3 3 0 Chemotaxis phosphatase, CheZ DNApol3-delta_C PF09115.10 gi|124027257|ref|YP_001012577.1| - 0.061 13.8 0.2 1.7 9.2 0.2 2.8 1 1 0 1 1 1 0 DNA polymerase III, delta subunit, C terminal Sipho_Gp157 PF05565.11 gi|124027257|ref|YP_001012577.1| - 0.12 12.4 1.0 0.77 9.8 0.7 2.1 2 0 0 2 2 2 0 Siphovirus Gp157 TPR_16 PF13432.6 gi|124027257|ref|YP_001012577.1| - 5.4 7.8 10.6 0.96 10.2 1.9 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat Alpha_Helical PF18489.1 gi|124027259|ref|YP_001012579.1| - 1.4e-38 132.0 0.0 1.8e-38 131.6 0.0 1.2 1 0 0 1 1 1 1 Alpha helical domain tRNA_bind PF01588.20 gi|124027259|ref|YP_001012579.1| - 3.1e-05 24.0 0.0 6e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain ABC_tran PF00005.27 gi|124027260|ref|YP_001012580.1| - 2.8e-24 86.2 0.0 4.3e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027260|ref|YP_001012580.1| - 2.5e-10 40.7 0.1 0.00019 21.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027260|ref|YP_001012580.1| - 1.8e-07 30.8 0.0 0.00069 19.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|124027260|ref|YP_001012580.1| - 0.00026 21.4 0.0 0.00045 20.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|124027260|ref|YP_001012580.1| - 0.012 16.1 0.0 0.019 15.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|124027260|ref|YP_001012580.1| - 0.017 15.4 0.0 0.037 14.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|124027260|ref|YP_001012580.1| - 0.019 15.2 0.1 0.85 9.9 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|124027260|ref|YP_001012580.1| - 0.028 14.1 0.1 0.044 13.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|124027260|ref|YP_001012580.1| - 0.045 14.2 0.2 0.85 10.0 0.2 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF3584 PF12128.8 gi|124027260|ref|YP_001012580.1| - 0.045 11.3 0.1 0.058 10.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_29 PF13555.6 gi|124027260|ref|YP_001012580.1| - 0.049 13.4 0.0 0.092 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|124027260|ref|YP_001012580.1| - 0.059 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|124027260|ref|YP_001012580.1| - 0.07 13.0 0.2 0.36 10.7 0.1 2.0 2 0 0 2 2 2 0 NACHT domain cobW PF02492.19 gi|124027260|ref|YP_001012580.1| - 0.074 12.6 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.6 gi|124027260|ref|YP_001012580.1| - 0.12 12.0 0.0 15 5.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|124027260|ref|YP_001012580.1| - 0.17 12.2 0.3 0.89 9.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|124027260|ref|YP_001012580.1| - 0.24 11.1 0.0 0.38 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ZnuA PF01297.17 gi|124027261|ref|YP_001012581.1| - 4.2e-19 69.0 0.0 5.6e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic PucR PF07905.11 gi|124027261|ref|YP_001012581.1| - 0.0089 16.3 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 1 Purine catabolism regulatory protein-like family ABC-3 PF00950.17 gi|124027262|ref|YP_001012582.1| - 1.1e-20 74.3 27.9 1.1e-20 74.3 27.9 1.2 1 1 0 1 1 1 1 ABC 3 transport family RHH_3 PF12651.7 gi|124027263|ref|YP_001012583.1| - 1.2e-10 41.2 0.1 1.8e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain NikR_C PF08753.11 gi|124027263|ref|YP_001012583.1| - 6.5e-09 35.8 0.8 4.6e-08 33.1 0.0 2.3 3 0 0 3 3 3 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|124027263|ref|YP_001012583.1| - 5.6e-06 26.1 0.4 9.2e-06 25.4 0.4 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|124027263|ref|YP_001012583.1| - 0.029 14.5 0.0 0.13 12.4 0.0 1.8 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system DUF2120 PF09893.9 gi|124027263|ref|YP_001012583.1| - 0.059 13.5 0.1 1.8 8.7 0.1 2.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) DSPc PF00782.20 gi|124027264|ref|YP_001012584.1| - 6.5e-07 29.2 0.0 1.8e-06 27.8 0.0 1.6 2 0 0 2 2 2 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|124027264|ref|YP_001012584.1| - 0.00063 19.4 0.0 0.00094 18.8 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase DUF442 PF04273.13 gi|124027264|ref|YP_001012584.1| - 0.14 12.3 0.0 0.55 10.3 0.0 1.9 1 1 0 1 1 1 0 Putative phosphatase (DUF442) CDKN3 PF05706.12 gi|124027264|ref|YP_001012584.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) Lon_C PF05362.13 gi|124027265|ref|YP_001012585.1| - 7.6e-09 35.4 0.1 1.6e-08 34.3 0.1 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|124027265|ref|YP_001012585.1| - 0.11 12.4 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Subunit ChlI of Mg-chelatase Vps54_N PF10475.9 gi|124027265|ref|YP_001012585.1| - 0.19 11.0 0.1 14 4.9 0.0 2.2 2 0 0 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex PRR18 PF15671.5 gi|124027265|ref|YP_001012585.1| - 8 6.3 11.1 18 5.1 11.1 1.5 1 0 0 1 1 1 0 Proline-rich protein family 18 MobB PF03205.14 gi|124027266|ref|YP_001012586.1| - 1.3e-05 25.1 0.0 1.5e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NrfD PF03916.14 gi|124027267|ref|YP_001012587.1| - 8.1e-14 52.0 30.0 8.1e-14 52.0 30.0 1.9 3 1 0 3 3 3 1 Polysulphide reductase, NrfD DUF1616 PF07760.11 gi|124027267|ref|YP_001012587.1| - 0.11 11.8 13.1 0.059 12.7 1.6 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF1616) Chordopox_A13L PF05961.11 gi|124027267|ref|YP_001012587.1| - 0.12 12.6 0.0 0.31 11.3 0.0 1.7 1 0 0 1 1 1 0 Chordopoxvirus A13L protein DUF3671 PF12420.8 gi|124027267|ref|YP_001012587.1| - 0.47 10.5 1.2 2.5 8.2 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function Fer4_7 PF12838.7 gi|124027268|ref|YP_001012588.1| - 1.1e-14 54.7 25.2 1.2e-06 29.0 8.5 3.2 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|124027268|ref|YP_001012588.1| - 1.6e-14 53.9 13.2 1.6e-14 53.9 13.2 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|124027268|ref|YP_001012588.1| - 8.2e-11 41.9 27.6 3.6e-06 27.0 8.3 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|124027268|ref|YP_001012588.1| - 1.5e-10 40.4 39.6 1.8e-07 30.7 2.2 5.7 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|124027268|ref|YP_001012588.1| - 5.1e-10 39.4 24.3 5.3e-05 23.3 12.7 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124027268|ref|YP_001012588.1| - 5.4e-09 35.7 42.4 2e-05 24.4 4.8 5.1 4 2 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|124027268|ref|YP_001012588.1| - 8.3e-07 28.7 35.2 0.00019 21.3 2.0 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|124027268|ref|YP_001012588.1| - 2.1e-05 25.1 42.1 0.047 14.6 5.0 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|124027268|ref|YP_001012588.1| - 2.8e-05 24.5 22.2 0.0016 18.8 5.8 3.1 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124027268|ref|YP_001012588.1| - 0.00023 21.4 2.4 0.00023 21.4 2.4 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|124027268|ref|YP_001012588.1| - 0.00047 20.6 21.5 0.67 10.6 0.2 4.0 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124027268|ref|YP_001012588.1| - 0.0006 19.9 26.2 0.0033 17.5 4.7 3.4 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124027268|ref|YP_001012588.1| - 0.024 15.6 29.7 1.2 10.2 3.1 3.8 2 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|124027268|ref|YP_001012588.1| - 0.22 12.3 20.9 0.18 12.6 4.9 3.8 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|124027268|ref|YP_001012588.1| - 6.3 7.7 21.7 6.1 7.8 3.0 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|124027268|ref|YP_001012588.1| - 8.8 6.5 11.2 9.1 6.5 0.1 2.6 2 1 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Molybdopterin PF00384.22 gi|124027269|ref|YP_001012589.1| - 5.5e-39 134.3 0.0 3.3e-38 131.8 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|124027269|ref|YP_001012589.1| - 3e-10 40.1 0.1 9.8e-10 38.4 0.0 1.8 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|124027269|ref|YP_001012589.1| - 3.1e-06 26.8 0.1 7.4e-06 25.6 0.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence CDC48_N PF02359.18 gi|124027269|ref|YP_001012589.1| - 0.0076 16.4 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Molybdop_Fe4S4 PF04879.16 gi|124027269|ref|YP_001012589.1| - 0.032 14.2 0.1 0.062 13.3 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain UCR_Fe-S_N PF10399.9 gi|124027269|ref|YP_001012589.1| - 0.34 10.3 0.0 0.34 10.3 0.0 1.7 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TFX_C PF14601.6 gi|124027270|ref|YP_001012590.1| - 5e-19 68.1 0.0 6.9e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|124027270|ref|YP_001012590.1| - 6.4e-05 22.4 0.2 0.00011 21.7 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|124027270|ref|YP_001012590.1| - 0.0003 20.5 0.2 0.00054 19.7 0.2 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|124027270|ref|YP_001012590.1| - 0.0021 17.7 0.1 0.0035 17.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|124027270|ref|YP_001012590.1| - 0.004 17.1 0.2 0.0068 16.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn helix UPF0122 PF04297.14 gi|124027270|ref|YP_001012590.1| - 0.01 16.1 0.0 0.015 15.5 0.0 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF2774 PF11242.8 gi|124027270|ref|YP_001012590.1| - 0.024 14.8 0.0 0.078 13.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2774) KORA PF16509.5 gi|124027270|ref|YP_001012590.1| - 0.024 14.9 0.0 0.038 14.3 0.0 1.3 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_38 PF13936.6 gi|124027270|ref|YP_001012590.1| - 0.032 14.0 0.0 0.074 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|124027270|ref|YP_001012590.1| - 0.032 13.8 0.0 0.063 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|124027270|ref|YP_001012590.1| - 0.039 13.8 0.1 0.096 12.5 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|124027270|ref|YP_001012590.1| - 0.043 13.7 0.0 0.085 12.8 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|124027270|ref|YP_001012590.1| - 0.057 13.2 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain SBP_bac_11 PF13531.6 gi|124027271|ref|YP_001012591.1| - 1.2e-43 149.5 0.8 1.4e-43 149.3 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|124027271|ref|YP_001012591.1| - 1.1e-14 55.2 0.1 2.2e-07 31.1 0.0 2.1 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|124027271|ref|YP_001012591.1| - 3.9e-09 36.7 0.0 3.4e-05 23.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|124027271|ref|YP_001012591.1| - 6.9e-05 22.6 0.1 9e-05 22.2 0.1 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.7 gi|124027271|ref|YP_001012591.1| - 0.0084 15.2 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.22 gi|124027272|ref|YP_001012592.1| - 2.7e-13 50.1 13.8 2.7e-13 50.1 13.8 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|124027273|ref|YP_001012593.1| - 3.9e-35 121.3 0.0 5.5e-35 120.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027273|ref|YP_001012593.1| - 7.5e-17 62.1 0.2 1.5e-07 31.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027273|ref|YP_001012593.1| - 2.8e-08 33.5 0.1 0.0031 17.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|124027273|ref|YP_001012593.1| - 2.3e-05 24.0 0.2 5.2e-05 22.9 0.2 1.6 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|124027273|ref|YP_001012593.1| - 2.4e-05 24.2 0.0 0.00047 20.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|124027273|ref|YP_001012593.1| - 4.5e-05 24.0 0.0 6.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|124027273|ref|YP_001012593.1| - 7.7e-05 22.5 0.2 0.00047 19.9 0.1 1.9 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|124027273|ref|YP_001012593.1| - 0.00011 22.2 0.3 0.0066 16.4 0.1 2.1 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.6 gi|124027273|ref|YP_001012593.1| - 0.00011 22.5 0.1 0.0069 16.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|124027273|ref|YP_001012593.1| - 0.00015 22.2 0.0 0.00044 20.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|124027273|ref|YP_001012593.1| - 0.00032 20.7 0.1 0.00053 20.0 0.1 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|124027273|ref|YP_001012593.1| - 0.00048 20.6 0.0 0.006 17.0 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|124027273|ref|YP_001012593.1| - 0.00086 19.5 0.2 0.0084 16.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|124027273|ref|YP_001012593.1| - 0.0015 17.9 0.2 0.25 10.7 0.0 2.1 2 0 0 2 2 2 1 KaiC AAA_19 PF13245.6 gi|124027273|ref|YP_001012593.1| - 0.0032 17.8 0.1 0.036 14.4 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|124027273|ref|YP_001012593.1| - 0.0036 16.9 0.0 0.0061 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|124027273|ref|YP_001012593.1| - 0.0038 16.4 0.2 0.094 11.9 0.2 2.0 2 0 0 2 2 2 1 NB-ARC domain T2SSE PF00437.20 gi|124027273|ref|YP_001012593.1| - 0.0067 15.5 0.2 0.011 14.8 0.2 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.6 gi|124027273|ref|YP_001012593.1| - 0.008 15.8 0.7 0.35 10.4 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|124027273|ref|YP_001012593.1| - 0.009 16.1 0.0 0.031 14.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|124027273|ref|YP_001012593.1| - 0.012 15.2 0.1 0.018 14.6 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|124027273|ref|YP_001012593.1| - 0.015 15.2 0.2 0.057 13.3 0.2 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_13 PF13166.6 gi|124027273|ref|YP_001012593.1| - 0.017 13.8 0.0 0.022 13.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|124027273|ref|YP_001012593.1| - 0.018 13.9 0.0 0.025 13.4 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_18 PF13238.6 gi|124027273|ref|YP_001012593.1| - 0.019 15.5 0.1 0.19 12.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|124027273|ref|YP_001012593.1| - 0.019 15.2 0.0 0.23 11.7 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|124027273|ref|YP_001012593.1| - 0.021 14.2 0.0 0.049 13.0 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|124027273|ref|YP_001012593.1| - 0.023 14.9 0.1 0.16 12.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|124027273|ref|YP_001012593.1| - 0.027 13.3 0.1 1.8 7.3 0.3 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|124027273|ref|YP_001012593.1| - 0.03 14.0 0.3 0.2 11.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|124027273|ref|YP_001012593.1| - 0.052 13.5 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|124027273|ref|YP_001012593.1| - 0.053 13.5 0.2 0.36 10.8 0.1 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA12 PF10443.9 gi|124027273|ref|YP_001012593.1| - 0.064 12.0 0.0 0.081 11.6 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein MobB PF03205.14 gi|124027273|ref|YP_001012593.1| - 0.077 12.9 0.1 0.17 11.8 0.1 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|124027273|ref|YP_001012593.1| - 0.086 12.7 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 NTPase TsaE PF02367.17 gi|124027273|ref|YP_001012593.1| - 0.12 12.4 0.1 0.27 11.2 0.1 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|124027273|ref|YP_001012593.1| - 0.15 11.3 0.1 0.24 10.7 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_7 PF12775.7 gi|124027273|ref|YP_001012593.1| - 0.2 11.1 0.1 0.33 10.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|124027273|ref|YP_001012593.1| - 0.21 11.2 0.2 0.33 10.6 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF498 PF04430.14 gi|124027274|ref|YP_001012594.1| - 3e-10 40.1 0.0 3.4e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) RNA_POL_M_15KD PF02150.16 gi|124027275|ref|YP_001012595.1| - 1.6e-08 34.2 0.1 2.4e-08 33.7 0.1 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.6 gi|124027275|ref|YP_001012595.1| - 0.0007 19.5 2.1 0.0016 18.3 2.1 1.6 1 1 0 1 1 1 1 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|124027275|ref|YP_001012595.1| - 0.0086 15.7 2.2 0.043 13.5 0.3 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DUF2387 PF09526.10 gi|124027275|ref|YP_001012595.1| - 0.015 15.4 4.9 0.023 14.8 0.5 2.4 1 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-TFIIB PF13453.6 gi|124027275|ref|YP_001012595.1| - 0.028 13.8 1.4 0.096 12.0 1.4 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger CE2_N PF17996.1 gi|124027275|ref|YP_001012595.1| - 0.03 14.3 0.3 0.037 14.0 0.3 1.2 1 0 0 1 1 1 0 Carbohydrate esterase 2 N-terminal zinc_ribbon_2 PF13240.6 gi|124027275|ref|YP_001012595.1| - 0.031 14.0 4.2 1.3 8.8 1.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|124027275|ref|YP_001012595.1| - 0.034 14.2 0.2 0.053 13.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_13 PF09855.9 gi|124027275|ref|YP_001012595.1| - 0.039 14.1 1.1 0.13 12.5 0.1 2.0 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) TetR_C_23 PF17931.1 gi|124027275|ref|YP_001012595.1| - 0.06 13.5 0.1 0.068 13.3 0.1 1.1 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Ribosomal_L33 PF00471.20 gi|124027275|ref|YP_001012595.1| - 0.072 13.5 2.0 7.9 7.0 0.4 2.5 2 1 0 2 2 2 0 Ribosomal protein L33 DNA_ligase_ZBD PF03119.16 gi|124027275|ref|YP_001012595.1| - 0.29 11.2 4.4 1.3 9.1 4.4 2.1 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-IS66 PF13005.7 gi|124027275|ref|YP_001012595.1| - 0.34 11.3 4.8 0.42 11.1 0.2 2.7 3 1 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.6 gi|124027275|ref|YP_001012595.1| - 0.39 10.2 2.3 0.91 9.0 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|124027275|ref|YP_001012595.1| - 0.5 9.9 5.0 8.2 6.0 0.1 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com Zn_ribbon_recom PF13408.6 gi|124027275|ref|YP_001012595.1| - 0.89 10.1 3.8 3.8 8.1 3.8 2.0 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zn-ribbon_14 PF16503.5 gi|124027275|ref|YP_001012595.1| - 2.2 7.8 5.6 1.7 8.2 0.7 2.2 2 0 0 2 2 2 0 Zinc-ribbon zf-Mss51 PF13824.6 gi|124027275|ref|YP_001012595.1| - 2.5 8.2 6.1 8 6.7 1.1 2.9 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 PYNP_C PF07831.13 gi|124027276|ref|YP_001012596.1| - 1.1e-16 60.2 0.3 7.3e-14 51.2 0.0 2.7 2 0 0 2 2 2 2 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|124027276|ref|YP_001012596.1| - 2.6e-09 37.0 0.1 8.8e-09 35.3 0.1 1.9 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|124027276|ref|YP_001012596.1| - 2.9e-09 36.7 0.2 2.9e-09 36.7 0.2 2.3 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain Molydop_binding PF01568.21 gi|124027276|ref|YP_001012596.1| - 0.0012 18.8 0.1 0.0027 17.7 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.9 gi|124027276|ref|YP_001012596.1| - 0.0044 15.9 0.0 0.01 14.7 0.0 1.5 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Biotin_lipoyl PF00364.22 gi|124027276|ref|YP_001012596.1| - 0.012 15.4 0.0 1.7 8.5 0.0 3.2 3 0 0 3 3 3 0 Biotin-requiring enzyme HlyD_D23 PF16576.5 gi|124027276|ref|YP_001012596.1| - 0.039 13.2 0.0 2.2 7.4 0.0 3.2 3 1 0 4 4 4 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 gi|124027276|ref|YP_001012596.1| - 0.053 13.4 0.0 0.21 11.5 0.0 2.0 1 0 0 1 1 1 0 Biotin-lipoyl like Arg_decarbox_C PF17944.1 gi|124027276|ref|YP_001012596.1| - 0.12 12.9 0.1 89 3.8 0.0 3.6 3 0 0 3 3 3 0 Arginine decarboxylase C-terminal helical extension Spermine_synth PF01564.17 gi|124027278|ref|YP_001012598.1| - 2.9e-47 160.5 0.0 3.9e-47 160.1 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_25 PF13649.6 gi|124027278|ref|YP_001012598.1| - 2e-07 31.6 0.0 3.8e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|124027278|ref|YP_001012598.1| - 1.6e-05 24.8 0.0 2.8e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_12 PF08242.12 gi|124027278|ref|YP_001012598.1| - 5.5e-05 23.8 0.0 0.00015 22.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|124027278|ref|YP_001012598.1| - 0.00031 21.3 0.2 0.0043 17.7 0.1 2.6 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|124027278|ref|YP_001012598.1| - 0.0014 18.2 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Spermine_synt_N PF17284.2 gi|124027278|ref|YP_001012598.1| - 0.0028 17.5 0.0 0.0052 16.6 0.0 1.4 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_31 PF13847.6 gi|124027278|ref|YP_001012598.1| - 0.0082 16.0 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|124027278|ref|YP_001012598.1| - 0.011 14.8 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|124027278|ref|YP_001012598.1| - 0.013 15.3 0.0 0.024 14.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain DUF43 PF01861.16 gi|124027278|ref|YP_001012598.1| - 0.017 14.4 0.0 0.024 13.9 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain NAD_binding_7 PF13241.6 gi|124027278|ref|YP_001012598.1| - 0.018 15.5 0.2 0.032 14.6 0.2 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|124027278|ref|YP_001012598.1| - 0.028 14.7 0.1 0.056 13.7 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_2 PF00891.18 gi|124027278|ref|YP_001012598.1| - 0.048 12.9 0.0 0.086 12.1 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_18 PF12847.7 gi|124027278|ref|YP_001012598.1| - 0.1 12.6 0.1 0.22 11.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain DUF87 PF01935.17 gi|124027279|ref|YP_001012599.1| - 2e-17 64.1 0.0 3.6e-17 63.2 0.0 1.4 1 1 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|124027279|ref|YP_001012599.1| - 8.4e-11 41.4 0.0 3.2e-05 23.0 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|124027279|ref|YP_001012599.1| - 2.2e-08 33.2 0.2 2.5e-05 23.1 0.0 2.4 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 gi|124027279|ref|YP_001012599.1| - 7.5e-05 23.0 4.0 0.077 13.3 0.1 2.8 3 1 0 3 3 2 2 AAA domain TraG-D_C PF12696.7 gi|124027279|ref|YP_001012599.1| - 8.1e-05 22.6 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_10 PF12846.7 gi|124027279|ref|YP_001012599.1| - 0.00063 18.8 0.0 0.0017 17.3 0.0 1.9 1 1 0 1 1 1 1 AAA-like domain AAA_30 PF13604.6 gi|124027279|ref|YP_001012599.1| - 0.0023 17.7 0.2 2.3 7.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain ResIII PF04851.15 gi|124027279|ref|YP_001012599.1| - 0.003 17.6 0.0 0.28 11.2 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit CbiA PF01656.23 gi|124027279|ref|YP_001012599.1| - 0.003 17.6 0.0 0.005 16.9 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain PhoH PF02562.16 gi|124027279|ref|YP_001012599.1| - 0.0097 15.4 1.6 2.6 7.5 0.3 2.4 2 1 0 2 2 2 2 PhoH-like protein FtsK_SpoIIIE PF01580.18 gi|124027279|ref|YP_001012599.1| - 0.01 15.2 0.1 0.19 11.1 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_19 PF13245.6 gi|124027279|ref|YP_001012599.1| - 0.019 15.3 0.8 4.9 7.5 0.1 2.4 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|124027279|ref|YP_001012599.1| - 0.048 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|124027279|ref|YP_001012599.1| - 0.051 14.0 0.9 0.57 10.5 0.9 2.3 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|124027279|ref|YP_001012599.1| - 0.055 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zot PF05707.12 gi|124027279|ref|YP_001012599.1| - 0.084 12.5 0.0 3.4 7.2 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) NACHT PF05729.12 gi|124027279|ref|YP_001012599.1| - 0.095 12.6 0.6 0.52 10.2 0.1 2.2 2 0 0 2 2 2 0 NACHT domain AAA_31 PF13614.6 gi|124027279|ref|YP_001012599.1| - 0.11 12.5 0.2 0.4 10.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain XdhC_C PF13478.6 gi|124027279|ref|YP_001012599.1| - 0.11 13.0 0.1 0.96 10.0 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain AAA_28 PF13521.6 gi|124027279|ref|YP_001012599.1| - 0.12 12.6 0.1 0.28 11.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain LigT_PEase PF02834.16 gi|124027280|ref|YP_001012600.1| - 2.7e-32 110.8 0.2 9.1e-16 57.8 0.1 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|124027280|ref|YP_001012600.1| - 4.2e-15 56.0 0.0 5e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|124027280|ref|YP_001012600.1| - 1.8e-11 44.3 0.0 1.3e-10 41.5 0.0 1.9 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|124027280|ref|YP_001012600.1| - 0.00076 19.0 0.0 0.0031 17.0 0.0 1.8 1 1 1 2 2 2 1 Uncharacterised conserved protein MJ1316 PF04457.12 gi|124027281|ref|YP_001012601.1| - 5.8e-06 27.0 0.1 7e-06 26.7 0.1 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Secretin_N PF03958.17 gi|124027282|ref|YP_001012602.1| - 0.03 14.7 0.3 0.099 13.1 0.3 2.2 1 1 0 1 1 1 0 Bacterial type II/III secretion system short domain Hydrolase PF00702.26 gi|124027283|ref|YP_001012603.1| - 1.6e-10 41.7 0.0 8e-10 39.4 0.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|124027283|ref|YP_001012603.1| - 3.2e-10 40.7 0.0 4.1e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|124027283|ref|YP_001012603.1| - 1.2e-07 31.8 0.0 9.4e-06 25.5 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|124027283|ref|YP_001012603.1| - 2.4e-05 24.5 0.0 0.00011 22.3 0.0 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|124027283|ref|YP_001012603.1| - 0.019 14.5 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase SpoIIAA-like PF11964.8 gi|124027283|ref|YP_001012603.1| - 0.1 13.6 0.0 0.17 13.0 0.0 1.6 1 1 0 1 1 1 0 SpoIIAA-like TGS PF02824.21 gi|124027285|ref|YP_001012605.1| - 1.4e-21 76.3 0.0 2.6e-21 75.4 0.0 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|124027285|ref|YP_001012605.1| - 5.2e-17 61.8 0.0 1.2e-16 60.7 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|124027285|ref|YP_001012605.1| - 2.1e-14 53.5 0.0 1.4e-13 50.9 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|124027285|ref|YP_001012605.1| - 6.3e-10 38.8 0.0 1.1e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|124027285|ref|YP_001012605.1| - 0.0018 18.4 0.1 0.1 12.8 0.1 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF933) GTP_EFTU PF00009.27 gi|124027285|ref|YP_001012605.1| - 0.017 14.6 0.0 22 4.5 0.0 3.2 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|124027285|ref|YP_001012605.1| - 0.03 13.8 0.0 3.1 7.2 0.0 2.5 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_28 PF13521.6 gi|124027285|ref|YP_001012605.1| - 0.037 14.3 0.1 0.79 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|124027285|ref|YP_001012605.1| - 0.051 13.0 0.0 0.69 9.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein ABC_tran PF00005.27 gi|124027285|ref|YP_001012605.1| - 0.074 13.6 0.1 9.3 6.8 0.0 2.5 2 0 0 2 2 2 0 ABC transporter SRPRB PF09439.10 gi|124027285|ref|YP_001012605.1| - 0.12 11.8 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MeaB PF03308.16 gi|124027285|ref|YP_001012605.1| - 0.12 11.3 0.0 12 4.8 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|124027285|ref|YP_001012605.1| - 0.17 12.2 0.0 0.57 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|124027285|ref|YP_001012605.1| - 0.17 11.2 0.0 0.44 9.9 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AMMECR1 PF01871.17 gi|124027287|ref|YP_001012607.1| - 9.3e-50 168.5 0.0 1.1e-49 168.2 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 Methyltr_RsmB-F PF01189.17 gi|124027288|ref|YP_001012608.1| - 4.7e-14 52.5 0.0 6.8e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|124027288|ref|YP_001012608.1| - 0.0048 17.4 0.0 0.01 16.3 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Thymidylate_kin PF02223.17 gi|124027289|ref|YP_001012609.1| - 1.8e-31 109.3 0.0 2.2e-31 109.0 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|124027289|ref|YP_001012609.1| - 2.8e-08 33.9 0.0 9e-08 32.2 0.0 1.7 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_28 PF13521.6 gi|124027289|ref|YP_001012609.1| - 4.6e-05 23.7 0.0 6.2e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|124027289|ref|YP_001012609.1| - 6.8e-05 23.4 0.2 0.0035 17.9 0.2 2.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|124027289|ref|YP_001012609.1| - 0.0041 17.3 0.0 0.0065 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|124027289|ref|YP_001012609.1| - 0.087 13.2 0.1 8.6 6.8 0.0 2.9 3 0 0 3 3 3 0 AAA domain FMN_red PF03358.15 gi|124027290|ref|YP_001012610.1| - 4.8e-27 94.6 0.6 1.2e-26 93.4 0.0 1.7 2 0 0 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|124027290|ref|YP_001012610.1| - 3.9e-12 46.3 0.0 6.2e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Asparaginase_2 PF01112.18 gi|124027291|ref|YP_001012611.1| - 2.4e-65 220.6 0.6 2.8e-65 220.3 0.6 1.0 1 0 0 1 1 1 1 Asparaginase Ribosomal_60s PF00428.19 gi|124027292|ref|YP_001012612.1| - 2.6e-19 69.6 19.2 3.2e-19 69.3 19.2 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|124027292|ref|YP_001012612.1| - 0.0017 18.3 6.7 0.42 10.6 0.1 2.3 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain EF-hand_14 PF17959.1 gi|124027292|ref|YP_001012612.1| - 0.027 14.8 0.5 0.084 13.2 0.0 1.8 2 0 0 2 2 2 0 EF-hand domain MAGE PF01454.19 gi|124027292|ref|YP_001012612.1| - 0.061 13.0 0.4 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 MAGE family DUF3391 PF11871.8 gi|124027292|ref|YP_001012612.1| - 0.15 12.6 5.2 0.22 12.1 5.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) Type2_restr_D3 PF16902.5 gi|124027292|ref|YP_001012612.1| - 0.16 11.9 0.9 0.2 11.6 0.1 1.5 2 0 0 2 2 2 0 Type-2 restriction enzyme D3 domain DUF1631 PF07793.11 gi|124027292|ref|YP_001012612.1| - 0.69 8.3 6.6 0.83 8.0 6.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) TIP49 PF06068.13 gi|124027294|ref|YP_001012614.1| - 4e-147 490.0 0.7 5.3e-147 489.6 0.7 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|124027294|ref|YP_001012614.1| - 2.3e-24 85.3 0.7 2.4e-23 82.0 0.3 2.8 3 0 0 3 3 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|124027294|ref|YP_001012614.1| - 7.9e-11 42.5 0.5 2.9e-07 31.0 0.1 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|124027294|ref|YP_001012614.1| - 2e-08 34.8 0.0 0.00038 20.9 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.12 gi|124027294|ref|YP_001012614.1| - 2.6e-07 30.5 0.5 8.7e-05 22.3 0.1 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|124027294|ref|YP_001012614.1| - 7.7e-06 26.2 0.0 0.14 12.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|124027294|ref|YP_001012614.1| - 0.00037 20.1 0.1 0.0039 16.7 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|124027294|ref|YP_001012614.1| - 0.0004 20.1 0.2 0.0065 16.2 0.1 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_lid_2 PF17863.1 gi|124027294|ref|YP_001012614.1| - 0.00065 19.5 0.1 0.0014 18.4 0.1 1.6 1 0 0 1 1 1 1 AAA lid domain TFIID-31kDa PF02291.15 gi|124027294|ref|YP_001012614.1| - 0.0014 18.7 0.1 0.31 11.1 0.0 2.4 2 0 0 2 2 2 1 Transcription initiation factor IID, 31kD subunit AAA_5 PF07728.14 gi|124027294|ref|YP_001012614.1| - 0.0016 18.4 0.1 0.015 15.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|124027294|ref|YP_001012614.1| - 0.0032 17.8 0.5 0.77 10.1 0.2 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|124027294|ref|YP_001012614.1| - 0.014 15.5 0.4 0.077 13.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|124027294|ref|YP_001012614.1| - 0.017 14.8 0.1 0.028 14.1 0.1 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.6 gi|124027294|ref|YP_001012614.1| - 0.023 14.9 0.0 0.023 14.9 0.0 2.4 3 1 0 3 3 2 0 AAA domain AAA_30 PF13604.6 gi|124027294|ref|YP_001012614.1| - 0.023 14.4 1.9 0.69 9.6 0.0 2.7 3 0 0 3 3 2 0 AAA domain IstB_IS21 PF01695.17 gi|124027294|ref|YP_001012614.1| - 0.024 14.4 0.1 0.046 13.5 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|124027294|ref|YP_001012614.1| - 0.024 15.2 0.0 0.067 13.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|124027294|ref|YP_001012614.1| - 0.027 14.1 0.3 0.17 11.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|124027294|ref|YP_001012614.1| - 0.034 13.6 0.2 0.078 12.4 0.2 1.5 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.27 gi|124027294|ref|YP_001012614.1| - 0.05 14.1 0.0 0.099 13.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|124027294|ref|YP_001012614.1| - 0.057 13.3 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.15 gi|124027294|ref|YP_001012614.1| - 0.057 13.4 0.1 0.38 10.7 0.1 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IPT PF01745.16 gi|124027294|ref|YP_001012614.1| - 0.061 12.7 0.1 0.14 11.5 0.1 1.5 1 0 0 1 1 1 0 Isopentenyl transferase DnaB_C PF03796.15 gi|124027294|ref|YP_001012614.1| - 0.069 12.5 0.1 0.38 10.0 0.0 2.0 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain Mg_chelatase PF01078.21 gi|124027294|ref|YP_001012614.1| - 0.079 12.3 1.0 0.26 10.6 0.2 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF2075 PF09848.9 gi|124027294|ref|YP_001012614.1| - 0.081 12.1 0.1 0.14 11.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|124027294|ref|YP_001012614.1| - 0.12 12.4 0.0 2 8.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain Lipoprotein_19 PF13617.6 gi|124027294|ref|YP_001012614.1| - 0.45 10.3 3.4 0.9 9.4 0.1 2.7 3 0 0 3 3 3 0 YnbE-like lipoprotein PAPS_reduct PF01507.19 gi|124027295|ref|YP_001012615.1| - 4.7e-31 108.2 0.0 7.2e-31 107.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|124027295|ref|YP_001012615.1| - 0.00088 18.5 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Diphthami_syn_2 PF01902.17 gi|124027295|ref|YP_001012615.1| - 0.0026 17.3 0.0 0.0042 16.6 0.0 1.3 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|124027295|ref|YP_001012615.1| - 0.021 14.3 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC rve PF00665.26 gi|124027295|ref|YP_001012615.1| - 0.063 13.5 0.0 4.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Integrase core domain PALP PF00291.25 gi|124027295|ref|YP_001012615.1| - 0.071 12.5 0.2 0.48 9.8 0.0 2.2 2 1 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme PAPS_reduct PF01507.19 gi|124027296|ref|YP_001012616.1| - 9.7e-10 38.8 0.0 1.4e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|124027296|ref|YP_001012616.1| - 8.7e-05 22.3 0.0 0.00013 21.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family BPD_transp_1 PF00528.22 gi|124027297|ref|YP_001012617.1| - 6.5e-05 22.7 16.4 6.5e-05 22.7 16.4 3.7 2 2 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|124027298|ref|YP_001012618.1| - 8.7e-17 61.3 0.0 1.5e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|124027298|ref|YP_001012618.1| - 2.6e-10 40.7 0.0 4.8e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|124027298|ref|YP_001012618.1| - 9.6e-08 32.2 0.0 2.5e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|124027298|ref|YP_001012618.1| - 1.1e-07 31.8 0.0 3.9e-07 30.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF3117 PF11314.8 gi|124027298|ref|YP_001012618.1| - 0.062 13.1 0.1 0.61 9.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3117) Cdc6_C PF09079.11 gi|124027298|ref|YP_001012618.1| - 0.066 13.2 0.0 0.48 10.4 0.0 2.2 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain PmbA_TldD PF01523.16 gi|124027300|ref|YP_001012620.1| - 1.6e-54 185.7 1.7 2.1e-54 185.3 1.7 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|124027301|ref|YP_001012621.1| - 4.8e-55 187.4 2.9 4.8e-55 187.4 2.9 1.4 2 0 0 2 2 2 1 Putative modulator of DNA gyrase Rhomboid PF01694.22 gi|124027302|ref|YP_001012622.1| - 5.6e-34 117.3 18.6 5.6e-34 117.3 18.6 2.7 4 0 0 4 4 4 1 Rhomboid family DUF1751 PF08551.10 gi|124027302|ref|YP_001012622.1| - 0.0036 17.8 0.4 0.0036 17.8 0.4 2.9 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) Phage_holin_3_6 PF07332.11 gi|124027303|ref|YP_001012623.1| - 0.00013 22.0 0.1 0.00017 21.6 0.1 1.3 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III MFS_1 PF07690.16 gi|124027303|ref|YP_001012623.1| - 0.002 17.1 0.0 0.0021 17.0 0.0 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF2254 PF10011.9 gi|124027303|ref|YP_001012623.1| - 0.0046 15.8 0.0 0.0071 15.2 0.0 1.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2254) LMBR1 PF04791.16 gi|124027303|ref|YP_001012623.1| - 0.029 13.3 0.0 0.037 12.9 0.0 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4574 PF15141.6 gi|124027303|ref|YP_001012623.1| - 0.079 12.9 0.9 0.16 11.9 0.1 1.8 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 DPM2 PF07297.12 gi|124027303|ref|YP_001012623.1| - 0.3 11.4 8.3 3.6 8.0 8.3 2.0 1 1 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) MscS_TM PF12794.7 gi|124027303|ref|YP_001012623.1| - 0.45 9.3 2.3 0.77 8.6 2.3 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF3007 PF11460.8 gi|124027303|ref|YP_001012623.1| - 2.4 8.5 7.8 21 5.5 7.8 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3007) DUF4307 PF14155.6 gi|124027303|ref|YP_001012623.1| - 5.4 6.9 5.6 1.2 9.0 0.9 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4307) AP_endonuc_2 PF01261.24 gi|124027304|ref|YP_001012624.1| - 5.3e-15 55.4 0.0 6.7e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AlaDh_PNT_C PF01262.21 gi|124027305|ref|YP_001012625.1| - 0.0061 15.9 0.1 0.0088 15.4 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|124027305|ref|YP_001012625.1| - 0.022 13.9 0.3 0.028 13.5 0.3 1.2 1 0 0 1 1 1 0 FAD binding domain Glyco_trans_4_2 PF13477.6 gi|124027305|ref|YP_001012625.1| - 0.025 14.6 0.0 0.035 14.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like NAD_binding_8 PF13450.6 gi|124027305|ref|YP_001012625.1| - 0.041 14.1 1.4 0.24 11.7 0.4 2.6 1 1 1 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|124027305|ref|YP_001012625.1| - 0.047 14.3 0.4 0.1 13.1 0.2 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|124027305|ref|YP_001012625.1| - 0.064 12.5 0.0 0.096 11.9 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|124027305|ref|YP_001012625.1| - 0.087 12.7 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aminotran_1_2 PF00155.21 gi|124027306|ref|YP_001012626.1| - 2.4e-43 148.7 0.0 2.9e-43 148.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|124027306|ref|YP_001012626.1| - 2.1e-11 43.3 0.0 1.3e-10 40.7 0.0 1.9 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|124027306|ref|YP_001012626.1| - 1.1e-05 24.9 0.0 1.5e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_3 PF00202.21 gi|124027306|ref|YP_001012626.1| - 0.048 12.3 0.0 0.11 11.2 0.0 1.6 2 0 0 2 2 2 0 Aminotransferase class-III PDDEXK_1 PF12705.7 gi|124027307|ref|YP_001012627.1| - 0.0085 16.0 0.1 0.015 15.3 0.0 1.6 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily RsdA_SigD_bd PF16751.5 gi|124027307|ref|YP_001012627.1| - 0.11 12.8 0.1 8.9 6.7 0.2 2.6 2 0 0 2 2 2 0 Anti-sigma-D factor RsdA to sigma factor binding region ATPase PF06745.13 gi|124027309|ref|YP_001012629.1| - 2e-88 295.7 0.0 2.2e-88 295.5 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|124027309|ref|YP_001012629.1| - 3.5e-07 30.0 0.0 6.1e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|124027309|ref|YP_001012629.1| - 1.1e-05 24.3 0.1 5.1e-05 22.1 0.1 1.9 1 1 1 2 2 2 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|124027309|ref|YP_001012629.1| - 0.0032 16.8 0.1 0.011 15.0 0.0 1.8 2 0 0 2 2 2 1 Rad51 T2SSE PF00437.20 gi|124027309|ref|YP_001012629.1| - 0.012 14.7 0.0 0.022 13.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein RecA PF00154.21 gi|124027309|ref|YP_001012629.1| - 0.021 14.3 0.1 0.64 9.4 0.0 2.7 3 0 0 3 3 3 0 recA bacterial DNA recombination protein AAA_19 PF13245.6 gi|124027309|ref|YP_001012629.1| - 0.025 14.9 0.1 0.049 14.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|124027309|ref|YP_001012629.1| - 0.033 14.1 0.1 0.077 12.9 0.1 1.6 1 1 0 1 1 1 0 NTPase AAA_7 PF12775.7 gi|124027309|ref|YP_001012629.1| - 0.06 12.8 0.2 0.11 12.0 0.0 1.4 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|124027309|ref|YP_001012629.1| - 0.14 12.6 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DnaB_C PF03796.15 gi|124027309|ref|YP_001012629.1| - 0.16 11.3 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA PF00004.29 gi|124027309|ref|YP_001012629.1| - 0.2 12.1 0.4 0.36 11.3 0.4 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2299 PF10061.9 gi|124027310|ref|YP_001012630.1| - 1.2e-30 106.0 0.0 1.4e-30 105.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) Na_H_Exchanger PF00999.21 gi|124027311|ref|YP_001012631.1| - 2.1e-24 86.1 41.1 2.8e-24 85.6 41.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.28 gi|124027311|ref|YP_001012631.1| - 0.01 16.3 10.1 0.043 14.3 0.4 2.9 3 0 0 3 3 3 0 CBS domain DNA_ligase_A_M PF01068.21 gi|124027312|ref|YP_001012632.1| - 2.4e-62 210.2 0.0 3.8e-62 209.6 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|124027312|ref|YP_001012632.1| - 9.3e-39 133.5 0.2 1.5e-38 132.9 0.2 1.3 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|124027312|ref|YP_001012632.1| - 5.6e-29 100.7 0.0 1.9e-28 98.9 0.0 1.9 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.6 gi|124027312|ref|YP_001012632.1| - 0.00081 19.4 0.5 0.041 13.9 0.0 2.9 3 0 0 3 3 3 1 DNA ligase OB-like domain DZR PF12773.7 gi|124027314|ref|YP_001012634.1| - 0.0013 18.7 4.1 0.074 13.1 4.6 2.2 1 1 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|124027314|ref|YP_001012634.1| - 0.0021 18.0 4.3 0.018 15.0 4.3 2.0 1 1 0 1 1 1 1 zinc-ribbons DUF1272 PF06906.11 gi|124027314|ref|YP_001012634.1| - 0.0028 17.7 7.0 0.0091 16.1 7.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) Prok-RING_1 PF14446.6 gi|124027314|ref|YP_001012634.1| - 0.01 15.8 4.1 0.41 10.6 1.9 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Ribosomal_S14 PF00253.21 gi|124027314|ref|YP_001012634.1| - 0.05 13.4 1.2 0.79 9.5 0.3 2.2 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e C1_2 PF03107.16 gi|124027314|ref|YP_001012634.1| - 0.071 13.4 9.0 0.1 13.0 2.1 2.3 1 1 1 2 2 2 0 C1 domain zf-C2HC5 PF06221.13 gi|124027314|ref|YP_001012634.1| - 0.096 12.7 4.3 0.52 10.3 0.1 2.5 1 1 1 3 3 3 0 Putative zinc finger motif, C2HC5-type Sgf11 PF08209.11 gi|124027314|ref|YP_001012634.1| - 0.11 12.1 5.9 1.9 8.1 0.2 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-C3HC4_3 PF13920.6 gi|124027314|ref|YP_001012634.1| - 0.2 11.5 8.6 3.6 7.5 8.6 2.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_4 PF14447.6 gi|124027314|ref|YP_001012634.1| - 0.21 11.5 7.7 35 4.4 8.1 2.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 zinc_ribbon_2 PF13240.6 gi|124027314|ref|YP_001012634.1| - 0.23 11.2 0.1 0.23 11.2 0.1 3.5 4 0 0 4 4 4 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|124027314|ref|YP_001012634.1| - 0.27 10.8 5.2 0.44 10.1 2.5 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding zf-BED PF02892.15 gi|124027314|ref|YP_001012634.1| - 0.36 10.9 7.7 3.8 7.6 0.2 3.0 2 1 1 3 3 3 0 BED zinc finger HypA PF01155.19 gi|124027314|ref|YP_001012634.1| - 0.47 10.5 4.0 5 7.2 4.0 2.0 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2757 PF10955.8 gi|124027314|ref|YP_001012634.1| - 0.47 10.8 6.9 1.1 9.6 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2757) zinc_ribbon_10 PF10058.9 gi|124027314|ref|YP_001012634.1| - 0.54 10.0 8.9 0.11 12.2 5.1 1.9 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ribbon_3 PF13248.6 gi|124027314|ref|YP_001012634.1| - 0.82 9.2 0.1 0.82 9.2 0.1 3.3 4 0 0 4 4 4 0 zinc-ribbon domain zf-Di19 PF05605.12 gi|124027314|ref|YP_001012634.1| - 0.97 9.8 11.2 1.3 9.4 0.2 3.3 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding PyrI_C PF02748.15 gi|124027314|ref|YP_001012634.1| - 1 9.3 11.6 1.5 8.8 0.5 2.9 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Zn_ribbon_SprT PF17283.2 gi|124027314|ref|YP_001012634.1| - 1.3 9.0 12.7 26 4.8 9.2 3.0 2 1 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|124027314|ref|YP_001012634.1| - 1.3 9.2 0.1 1.3 9.2 0.1 2.6 1 1 1 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|124027314|ref|YP_001012634.1| - 1.7 9.3 10.3 7.1 7.3 0.2 3.2 4 0 0 4 4 3 0 Zinc-finger double domain zf-AN1 PF01428.16 gi|124027314|ref|YP_001012634.1| - 2.5 8.4 9.8 26 5.1 0.8 2.8 1 1 2 3 3 3 0 AN1-like Zinc finger VATC PF18716.1 gi|124027314|ref|YP_001012634.1| - 2.6 8.0 10.9 1.4 8.8 0.2 3.0 2 1 1 3 3 3 0 Vms1-associating treble clef domain zf-C2H2_4 PF13894.6 gi|124027314|ref|YP_001012634.1| - 3.2 8.8 11.3 8.7 7.5 0.4 3.4 3 0 0 3 3 3 0 C2H2-type zinc finger Cys_rich_CPXG PF14255.6 gi|124027314|ref|YP_001012634.1| - 3.4 7.6 10.0 6.2 6.8 0.2 3.1 3 0 0 3 3 3 0 Cysteine-rich CPXCG RNA_POL_M_15KD PF02150.16 gi|124027314|ref|YP_001012634.1| - 6.4 6.8 11.0 7.2 6.6 0.0 3.1 2 1 1 3 3 3 0 RNA polymerases M/15 Kd subunit Metallophos_2 PF12850.7 gi|124027315|ref|YP_001012635.1| - 1.4e-19 70.9 0.0 2.3e-19 70.2 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|124027315|ref|YP_001012635.1| - 8.8e-15 55.8 0.0 1.2e-14 55.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|124027315|ref|YP_001012635.1| - 3.4e-11 43.0 1.5 7.2e-09 35.3 0.1 2.6 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Voltage_CLC PF00654.20 gi|124027316|ref|YP_001012636.1| - 2.9e-84 283.3 33.7 2.9e-84 283.3 33.7 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|124027316|ref|YP_001012636.1| - 7.7e-31 106.3 7.2 3.8e-15 56.1 0.2 2.8 2 0 0 2 2 2 2 CBS domain Rossmann-like PF10727.9 gi|124027316|ref|YP_001012636.1| - 3.5 7.5 5.7 1.2 9.0 0.0 3.0 3 2 2 5 5 5 0 Rossmann-like domain SPOUT_MTase_2 PF14419.6 gi|124027318|ref|YP_001012638.1| - 2.3e-80 268.0 2.3 1.9e-78 261.8 0.6 2.1 2 0 0 2 2 2 2 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|124027318|ref|YP_001012638.1| - 1.7e-22 80.0 1.1 4.8e-22 78.6 0.5 1.9 2 0 0 2 2 2 1 THUMP domain DUF531 PF04407.12 gi|124027318|ref|YP_001012638.1| - 0.2 11.8 0.0 0.34 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF531) Ribosomal_S3Ae PF01015.18 gi|124027319|ref|YP_001012639.1| - 2e-68 230.0 0.3 2.2e-68 229.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Band_7 PF01145.25 gi|124027319|ref|YP_001012639.1| - 0.18 11.8 0.1 2.8 7.9 0.2 2.5 1 1 1 2 2 2 0 SPFH domain / Band 7 family Pcc1 PF09341.10 gi|124027320|ref|YP_001012640.1| - 2.2e-05 24.5 0.0 2.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribosomal_S13_N PF08069.12 gi|124027322|ref|YP_001012642.1| - 9.9e-25 86.4 0.1 1.8e-24 85.6 0.1 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|124027322|ref|YP_001012642.1| - 1.3e-15 57.3 0.4 1.9e-15 56.8 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 GAGA PF09237.11 gi|124027322|ref|YP_001012642.1| - 0.12 12.2 0.6 3.1 7.7 0.1 2.3 2 0 0 2 2 2 0 GAGA factor Ham1p_like PF01725.16 gi|124027323|ref|YP_001012643.1| - 7.3e-52 176.0 0.0 8.2e-52 175.8 0.0 1.0 1 0 0 1 1 1 1 Ham1 family DUF3236 PF11576.8 gi|124027323|ref|YP_001012643.1| - 0.0029 17.3 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3236) RIO1 PF01163.22 gi|124027324|ref|YP_001012644.1| - 6.9e-12 45.3 0.0 1.1e-11 44.7 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|124027324|ref|YP_001012644.1| - 1.4e-11 44.8 0.6 2e-06 27.9 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|124027324|ref|YP_001012644.1| - 7e-11 41.9 0.0 1.7e-10 40.6 0.0 1.7 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|124027324|ref|YP_001012644.1| - 1.4e-08 34.4 0.0 2.1e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|124027324|ref|YP_001012644.1| - 6.8e-05 22.3 0.0 0.00013 21.3 0.0 1.5 1 1 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 gi|124027324|ref|YP_001012644.1| - 0.00026 20.7 0.0 0.00042 20.0 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) EcKinase PF02958.20 gi|124027324|ref|YP_001012644.1| - 0.081 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase Pkinase_fungal PF17667.1 gi|124027324|ref|YP_001012644.1| - 0.098 11.4 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase Choline_kinase PF01633.20 gi|124027324|ref|YP_001012644.1| - 0.16 11.5 0.0 0.36 10.4 0.0 1.5 2 0 0 2 2 2 0 Choline/ethanolamine kinase Peptidase_M22 PF00814.25 gi|124027325|ref|YP_001012645.1| - 1.4e-74 251.2 0.2 1.8e-74 250.9 0.2 1.0 1 0 0 1 1 1 1 Glycoprotease family Staygreen PF12638.7 gi|124027325|ref|YP_001012645.1| - 0.22 11.3 0.0 0.36 10.6 0.0 1.2 1 0 0 1 1 1 0 Staygreen protein Ribosomal_S27 PF01599.19 gi|124027326|ref|YP_001012646.1| - 1.4e-14 54.0 1.8 1.7e-14 53.7 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a DUF1451 PF07295.11 gi|124027326|ref|YP_001012646.1| - 0.00026 21.1 0.4 0.00026 21.0 0.4 1.1 1 0 0 1 1 1 1 Zinc-ribbon containing domain NRDD PF13597.6 gi|124027326|ref|YP_001012646.1| - 0.0027 16.5 0.4 0.0029 16.5 0.4 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase zf-NADH-PPase PF09297.11 gi|124027326|ref|YP_001012646.1| - 0.0033 17.0 3.2 0.28 10.9 0.2 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain PriA_CRR PF18319.1 gi|124027326|ref|YP_001012646.1| - 0.0079 16.2 2.0 0.036 14.1 2.0 2.1 1 1 0 1 1 1 1 PriA DNA helicase Cys-rich region (CRR) domain Zn_Tnp_IS1595 PF12760.7 gi|124027326|ref|YP_001012646.1| - 0.01 15.8 3.6 0.016 15.2 3.6 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|124027326|ref|YP_001012646.1| - 0.014 15.4 1.0 0.019 15.1 1.0 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family GFA PF04828.14 gi|124027326|ref|YP_001012646.1| - 0.02 15.2 1.3 0.5 10.7 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-piccolo PF05715.13 gi|124027326|ref|YP_001012646.1| - 0.02 15.0 0.2 0.024 14.8 0.2 1.1 1 0 0 1 1 1 0 Piccolo Zn-finger OrfB_Zn_ribbon PF07282.11 gi|124027326|ref|YP_001012646.1| - 0.03 14.2 0.4 0.034 14.1 0.4 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|124027326|ref|YP_001012646.1| - 0.038 13.9 2.6 2.7 8.0 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|124027326|ref|YP_001012646.1| - 0.047 13.2 4.2 5 6.7 1.3 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding DUF2387 PF09526.10 gi|124027326|ref|YP_001012646.1| - 0.052 13.7 1.0 0.072 13.2 1.0 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf_UBZ PF18439.1 gi|124027326|ref|YP_001012646.1| - 0.055 13.1 2.0 0.38 10.4 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger A2L_zn_ribbon PF08792.10 gi|124027326|ref|YP_001012646.1| - 0.064 13.0 2.3 5.2 6.9 0.3 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|124027326|ref|YP_001012646.1| - 0.075 13.6 4.4 0.37 11.3 4.1 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Rubredoxin_2 PF18073.1 gi|124027326|ref|YP_001012646.1| - 0.087 12.6 4.3 3.6 7.4 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Gmx_para_CXXCG PF09535.10 gi|124027326|ref|YP_001012646.1| - 0.1 11.8 1.5 0.16 11.2 1.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (Gmx_para_CXXCG) TFIIS_C PF01096.18 gi|124027326|ref|YP_001012646.1| - 0.11 12.4 1.9 3.9 7.4 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 gi|124027326|ref|YP_001012646.1| - 0.11 11.9 5.2 0.35 10.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|124027326|ref|YP_001012646.1| - 0.19 12.4 6.1 2.9 8.6 0.4 2.4 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.6 gi|124027326|ref|YP_001012646.1| - 0.28 11.1 4.8 1.6 8.7 4.8 2.0 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|124027326|ref|YP_001012646.1| - 0.46 10.3 7.0 0.9 9.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|124027326|ref|YP_001012646.1| - 0.59 10.1 6.6 2.5 8.1 0.5 2.3 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|124027326|ref|YP_001012646.1| - 1.3 9.2 8.3 13 6.1 8.4 2.3 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_S24e PF01282.19 gi|124027327|ref|YP_001012647.1| - 4.5e-23 81.0 0.4 6.6e-23 80.5 0.1 1.4 2 0 0 2 2 2 1 Ribosomal protein S24e DUF359 PF04019.12 gi|124027328|ref|YP_001012648.1| - 1.9e-29 101.9 0.0 2.1e-29 101.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.13 gi|124027329|ref|YP_001012649.1| - 1.7e-15 56.9 0.1 2e-15 56.6 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|124027329|ref|YP_001012649.1| - 0.0092 16.0 0.6 0.011 15.7 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|124027329|ref|YP_001012649.1| - 0.033 14.1 2.8 0.054 13.4 2.8 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|124027329|ref|YP_001012649.1| - 0.071 13.1 0.4 0.092 12.8 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C4H2 PF10146.9 gi|124027329|ref|YP_001012649.1| - 0.11 12.8 1.2 0.15 12.3 1.2 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein zf-ribbon_3 PF13248.6 gi|124027329|ref|YP_001012649.1| - 0.14 11.7 1.5 0.73 9.3 0.1 1.9 1 1 1 2 2 2 0 zinc-ribbon domain NRDD PF13597.6 gi|124027329|ref|YP_001012649.1| - 0.26 10.0 0.1 0.27 10.0 0.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-RRN7 PF11781.8 gi|124027329|ref|YP_001012649.1| - 0.38 10.5 0.2 0.38 10.5 0.2 2.0 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 SHS2_Rpb7-N PF03876.17 gi|124027330|ref|YP_001012650.1| - 1.9e-20 73.0 0.1 3.7e-20 72.1 0.1 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|124027330|ref|YP_001012650.1| - 2.3e-07 31.0 3.4 7.8e-07 29.3 3.4 1.9 1 1 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|124027330|ref|YP_001012650.1| - 0.00079 19.7 0.0 0.0011 19.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|124027331|ref|YP_001012651.1| - 1.8e-27 96.0 0.1 2.1e-27 95.7 0.1 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|124027331|ref|YP_001012651.1| - 8.6e-07 29.3 0.0 1.1e-06 29.0 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN PF01850.21 gi|124027331|ref|YP_001012651.1| - 6.1e-06 26.7 0.0 9.8e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.6 gi|124027331|ref|YP_001012651.1| - 0.0072 16.6 0.0 0.019 15.2 0.0 1.8 1 1 0 1 1 1 1 PIN domain eIF2_C PF09173.11 gi|124027332|ref|YP_001012652.1| - 1.8e-28 98.6 0.1 4.1e-28 97.5 0.1 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|124027332|ref|YP_001012652.1| - 1.4e-27 96.5 0.5 8.7e-27 93.9 0.5 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|124027332|ref|YP_001012652.1| - 3.5e-09 36.9 2.8 2.6e-08 34.1 2.2 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|124027332|ref|YP_001012652.1| - 0.0011 19.0 0.0 0.0023 18.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|124027332|ref|YP_001012652.1| - 0.0012 18.8 0.1 0.071 13.0 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|124027332|ref|YP_001012652.1| - 0.083 12.6 1.6 6 6.6 0.1 2.6 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Ribosomal_S6e PF01092.19 gi|124027333|ref|YP_001012653.1| - 1.1e-32 112.6 0.0 3.5e-32 111.0 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein S6e GreA_GreB PF01272.19 gi|124027333|ref|YP_001012653.1| - 0.0071 16.2 0.5 0.04 13.8 0.0 2.3 3 0 0 3 3 3 1 Transcription elongation factor, GreA/GreB, C-term V-set_CD47 PF08204.11 gi|124027333|ref|YP_001012653.1| - 0.096 12.7 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 CD47 immunoglobulin-like domain Rieske_2 PF13806.6 gi|124027333|ref|YP_001012653.1| - 0.12 12.3 0.0 5.2 7.1 0.0 2.2 2 0 0 2 2 2 0 Rieske-like [2Fe-2S] domain GTP_EFTU_D4 PF14578.6 gi|124027334|ref|YP_001012654.1| - 2.6e-39 133.0 1.9 7.6e-39 131.5 1.9 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|124027334|ref|YP_001012654.1| - 1.3e-33 116.2 0.0 2.4e-32 112.1 0.0 2.6 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|124027334|ref|YP_001012654.1| - 9.2e-24 83.6 0.3 2e-23 82.5 0.3 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|124027334|ref|YP_001012654.1| - 7.3e-11 42.3 6.1 3.6e-10 40.1 0.3 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|124027334|ref|YP_001012654.1| - 3.7e-06 27.0 0.0 1.3e-05 25.2 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase SGIII PF15467.6 gi|124027334|ref|YP_001012654.1| - 0.00077 18.8 0.0 0.29 10.3 0.0 2.1 2 0 0 2 2 2 2 Secretogranin-3 Roc PF08477.13 gi|124027334|ref|YP_001012654.1| - 0.0024 18.1 0.0 0.0073 16.5 0.0 1.9 2 0 0 2 2 1 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|124027334|ref|YP_001012654.1| - 0.0028 17.7 0.1 0.081 13.0 0.0 3.0 3 0 0 3 3 3 1 Dynamin family ATP_bind_1 PF03029.17 gi|124027334|ref|YP_001012654.1| - 0.021 14.6 0.0 0.079 12.7 0.0 1.9 1 1 0 2 2 2 0 Conserved hypothetical ATP binding protein MnmE_helical PF12631.7 gi|124027334|ref|YP_001012654.1| - 0.073 13.2 0.0 0.58 10.3 0.0 2.1 2 0 0 2 2 2 0 MnmE helical domain Ras PF00071.22 gi|124027334|ref|YP_001012654.1| - 0.074 12.7 0.0 0.71 9.5 0.0 2.3 1 1 0 1 1 1 0 Ras family Arf PF00025.21 gi|124027334|ref|YP_001012654.1| - 0.1 12.1 0.1 12 5.3 0.1 3.1 2 1 0 2 2 2 0 ADP-ribosylation factor family AGOG PF09171.10 gi|124027336|ref|YP_001012656.1| - 6.7e-59 199.2 0.0 8.8e-59 198.8 0.0 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase DHHA1 PF02272.19 gi|124027337|ref|YP_001012657.1| - 4.2e-07 30.5 0.1 2.7e-06 27.8 0.1 2.3 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|124027337|ref|YP_001012657.1| - 0.00017 21.8 0.1 0.00026 21.2 0.1 1.3 1 0 0 1 1 1 1 DHH family PNP_UDP_1 PF01048.20 gi|124027337|ref|YP_001012657.1| - 0.16 11.2 0.0 1.4 8.2 0.0 2.1 2 0 0 2 2 2 0 Phosphorylase superfamily DUF521 PF04412.13 gi|124027337|ref|YP_001012657.1| - 0.2 10.3 0.0 0.28 9.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF521) DUF429 PF04250.13 gi|124027338|ref|YP_001012658.1| - 2.7e-14 53.5 5.7 4.4e-12 46.2 5.7 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF429) Sensor PF13796.6 gi|124027338|ref|YP_001012658.1| - 0.13 12.3 0.3 0.13 12.3 0.3 1.7 2 0 0 2 2 2 0 Putative sensor Fer4_13 PF13370.6 gi|124027339|ref|YP_001012659.1| - 5.6e-23 81.2 4.6 8.4e-23 80.7 4.6 1.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|124027339|ref|YP_001012659.1| - 5.6e-17 62.2 4.0 6.4e-17 62.0 4.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|124027339|ref|YP_001012659.1| - 0.00041 20.1 3.6 0.0025 17.5 1.2 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|124027339|ref|YP_001012659.1| - 0.0026 17.8 3.0 0.016 15.3 3.5 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124027339|ref|YP_001012659.1| - 0.013 15.5 1.2 0.013 15.5 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain XkdW PF09636.10 gi|124027339|ref|YP_001012659.1| - 0.037 14.1 0.0 0.045 13.9 0.0 1.1 1 0 0 1 1 1 0 XkdW protein Fer4_19 PF06902.11 gi|124027339|ref|YP_001012659.1| - 0.064 13.3 4.2 0.23 11.5 4.2 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_7 PF12838.7 gi|124027339|ref|YP_001012659.1| - 0.073 13.7 3.7 0.38 11.4 0.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124027339|ref|YP_001012659.1| - 0.35 11.0 5.9 2 8.6 6.0 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain ERCC4 PF02732.15 gi|124027340|ref|YP_001012660.1| - 1.8e-19 70.5 0.0 2.5e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.7 gi|124027340|ref|YP_001012660.1| - 1.1e-12 47.9 0.0 2.1e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|124027340|ref|YP_001012660.1| - 1.3e-09 38.6 0.0 4.1e-09 36.9 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|124027340|ref|YP_001012660.1| - 1.3e-07 31.2 0.0 2.2e-06 27.2 0.0 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|124027340|ref|YP_001012660.1| - 0.028 14.7 0.0 0.19 12.0 0.0 2.3 2 1 1 3 3 3 0 Helix-hairpin-helix motif LDcluster4 PF18306.1 gi|124027341|ref|YP_001012661.1| - 1.2e-19 70.4 0.0 1.3e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family LSDAT_prok PF18171.1 gi|124027341|ref|YP_001012661.1| - 0.00034 19.9 0.0 0.0013 18.0 0.0 1.8 1 1 1 2 2 2 1 SLOG in TRPM, prokaryote Lysine_decarbox PF03641.14 gi|124027341|ref|YP_001012661.1| - 0.0019 18.3 0.1 0.0027 17.8 0.1 1.2 1 0 0 1 1 1 1 Possible lysine decarboxylase LSDAT_euk PF18139.1 gi|124027341|ref|YP_001012661.1| - 0.051 12.9 0.1 0.096 12.1 0.0 1.4 2 0 0 2 2 2 0 SLOG in TRPM Peptidase_M24 PF00557.24 gi|124027342|ref|YP_001012662.1| - 1.6e-71 240.3 0.5 2.1e-71 239.9 0.5 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|124027342|ref|YP_001012662.1| - 7.2e-08 33.2 0.0 1.7e-07 32.0 0.0 1.7 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF763 PF05559.11 gi|124027343|ref|YP_001012663.1| - 1.7e-120 401.9 0.0 2.1e-120 401.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH PF00633.23 gi|124027343|ref|YP_001012663.1| - 0.0037 17.0 0.4 0.013 15.4 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|124027343|ref|YP_001012663.1| - 0.57 10.8 2.0 1.4 9.6 0.0 2.7 3 0 0 3 3 3 0 Helix-hairpin-helix domain Ribosomal_S8e PF01201.22 gi|124027344|ref|YP_001012664.1| - 1.3e-36 125.8 0.7 1.4e-36 125.6 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e NTPase_I-T PF01931.18 gi|124027345|ref|YP_001012665.1| - 2e-49 167.5 0.0 2.3e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Methyltr_RsmB-F PF01189.17 gi|124027346|ref|YP_001012666.1| - 1.2e-45 155.7 0.0 1.6e-45 155.2 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|124027346|ref|YP_001012666.1| - 4.3e-05 23.9 0.0 8.7e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|124027346|ref|YP_001012666.1| - 0.0056 16.8 0.0 0.019 15.1 0.0 1.8 1 1 0 1 1 1 1 FtsJ-like methyltransferase Phe_tRNA-synt_N PF02912.18 gi|124027346|ref|YP_001012666.1| - 0.058 13.3 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain IF2_N PF04760.15 gi|124027346|ref|YP_001012666.1| - 0.15 11.9 0.0 0.73 9.7 0.0 2.2 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region ApbA PF02558.16 gi|124027347|ref|YP_001012667.1| - 1.8e-07 30.9 0.0 2.1e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|124027347|ref|YP_001012667.1| - 0.021 15.1 0.0 0.13 12.5 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain F420_oxidored PF03807.17 gi|124027347|ref|YP_001012667.1| - 0.03 14.9 0.1 0.049 14.2 0.1 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|124027347|ref|YP_001012667.1| - 0.03 13.9 0.1 0.055 13.0 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DAO PF01266.24 gi|124027347|ref|YP_001012667.1| - 0.099 12.2 0.8 0.1 12.1 0.8 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase ThiF PF00899.21 gi|124027347|ref|YP_001012667.1| - 0.16 11.3 0.2 0.27 10.6 0.2 1.3 1 0 0 1 1 1 0 ThiF family UDPG_MGDP_dh_N PF03721.14 gi|124027347|ref|YP_001012667.1| - 0.18 11.3 0.1 0.26 10.8 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Gar1 PF04410.14 gi|124027348|ref|YP_001012668.1| - 2.1e-11 43.8 0.0 2.3e-11 43.7 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRR20 PF15708.5 gi|124027348|ref|YP_001012668.1| - 0.27 11.1 9.3 0.42 10.5 9.3 1.4 1 0 0 1 1 1 0 Proline-rich protein family 20 TFIIB PF00382.19 gi|124027349|ref|YP_001012669.1| - 6.2e-19 67.8 2.1 1.3e-10 41.1 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|124027349|ref|YP_001012669.1| - 3.5e-10 39.2 0.3 5.9e-10 38.5 0.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|124027349|ref|YP_001012669.1| - 1.4e-06 27.7 0.4 0.012 15.1 0.1 2.7 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|124027349|ref|YP_001012669.1| - 4.3e-06 26.5 0.2 0.051 13.4 0.0 3.2 3 0 0 3 3 3 2 AsnC-type helix-turn-helix domain Cyclin_C PF02984.19 gi|124027349|ref|YP_001012669.1| - 6.9e-05 22.9 0.0 0.0099 16.0 0.0 2.3 1 1 1 2 2 2 1 Cyclin, C-terminal domain HTH_Tnp_ISL3 PF13542.6 gi|124027349|ref|YP_001012669.1| - 8e-05 22.0 3.0 0.071 12.5 0.3 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 KORA PF16509.5 gi|124027349|ref|YP_001012669.1| - 9.5e-05 22.6 0.2 0.34 11.2 0.0 2.4 2 0 0 2 2 2 2 TrfB plasmid transcriptional repressor DZR PF12773.7 gi|124027349|ref|YP_001012669.1| - 0.00069 19.6 0.1 0.0012 18.8 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon Cyclin_N PF00134.23 gi|124027349|ref|YP_001012669.1| - 0.00083 19.1 1.6 0.013 15.2 0.7 2.1 2 0 0 2 2 2 1 Cyclin, N-terminal domain HTH_24 PF13412.6 gi|124027349|ref|YP_001012669.1| - 0.0014 18.1 0.4 0.15 11.6 0.0 3.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|124027349|ref|YP_001012669.1| - 0.0033 17.4 0.3 4.4 7.4 0.0 2.8 2 0 0 2 2 2 0 Helix-turn-helix Nudix_N_2 PF14803.6 gi|124027349|ref|YP_001012669.1| - 0.0048 16.8 0.5 0.011 15.6 0.5 1.7 1 0 0 1 1 1 1 Nudix N-terminal HTH_23 PF13384.6 gi|124027349|ref|YP_001012669.1| - 0.0056 16.4 1.2 1.4 8.8 0.1 2.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_10 PF04967.12 gi|124027349|ref|YP_001012669.1| - 0.0071 16.1 0.0 0.21 11.4 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|124027349|ref|YP_001012669.1| - 0.0082 15.8 0.6 4.3 7.1 0.1 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 zf-ribbon_3 PF13248.6 gi|124027349|ref|YP_001012669.1| - 0.0097 15.3 1.5 2.9 7.4 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain HTH_37 PF13744.6 gi|124027349|ref|YP_001012669.1| - 0.021 14.8 0.1 2.3 8.2 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|124027349|ref|YP_001012669.1| - 0.026 14.5 0.3 12 5.9 0.0 2.8 2 0 0 2 2 2 0 HTH domain OrfB_Zn_ribbon PF07282.11 gi|124027349|ref|YP_001012669.1| - 0.026 14.4 0.2 0.051 13.5 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Trp_repressor PF01371.19 gi|124027349|ref|YP_001012669.1| - 0.028 14.5 0.7 2.7 8.2 0.1 3.3 2 1 2 4 4 3 0 Trp repressor protein Auto_anti-p27 PF06677.12 gi|124027349|ref|YP_001012669.1| - 0.028 14.6 1.3 0.058 13.6 1.3 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HTH_38 PF13936.6 gi|124027349|ref|YP_001012669.1| - 0.03 14.1 0.2 2.7 7.8 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|124027349|ref|YP_001012669.1| - 0.044 13.7 0.0 7.4 6.5 0.0 2.6 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MarR_2 PF12802.7 gi|124027349|ref|YP_001012669.1| - 0.045 13.7 0.1 1.3 9.0 0.0 2.9 3 0 0 3 3 3 0 MarR family DUF2089 PF09862.9 gi|124027349|ref|YP_001012669.1| - 0.047 13.7 1.1 7.5 6.6 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2089) DUF2318 PF10080.9 gi|124027349|ref|YP_001012669.1| - 0.047 13.8 0.0 0.095 12.8 0.0 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) HTH_Crp_2 PF13545.6 gi|124027349|ref|YP_001012669.1| - 0.06 13.3 0.2 3.9 7.5 0.0 3.3 3 1 1 4 4 4 0 Crp-like helix-turn-helix domain SpoIIID PF12116.8 gi|124027349|ref|YP_001012669.1| - 0.067 13.3 0.6 3.3 7.9 0.1 2.5 2 0 0 2 2 2 0 Stage III sporulation protein D TetR_N PF00440.23 gi|124027349|ref|YP_001012669.1| - 0.075 12.8 0.3 2 8.3 0.1 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_50 PF18024.1 gi|124027349|ref|YP_001012669.1| - 0.078 12.6 0.1 5.8 6.6 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain zf-piccolo PF05715.13 gi|124027349|ref|YP_001012669.1| - 0.081 13.1 0.1 0.15 12.2 0.1 1.5 1 0 0 1 1 1 0 Piccolo Zn-finger zf-TFIIB PF13453.6 gi|124027349|ref|YP_001012669.1| - 0.083 12.2 0.9 0.15 11.4 0.9 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger HTH_8 PF02954.19 gi|124027349|ref|YP_001012669.1| - 0.09 12.6 0.7 6.1 6.7 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family DUF4428 PF14471.6 gi|124027349|ref|YP_001012669.1| - 0.095 12.6 1.1 0.28 11.1 1.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) HTH_30 PF13556.6 gi|124027349|ref|YP_001012669.1| - 0.1 12.4 0.1 0.48 10.3 0.1 2.1 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain zf-NADH-PPase PF09297.11 gi|124027349|ref|YP_001012669.1| - 0.11 12.2 0.8 0.3 10.8 0.8 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain PriA_CRR PF18319.1 gi|124027349|ref|YP_001012669.1| - 0.12 12.4 0.3 0.24 11.4 0.3 1.5 1 0 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain HTH_31 PF13560.6 gi|124027349|ref|YP_001012669.1| - 0.14 12.5 0.5 31 5.0 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 gi|124027349|ref|YP_001012669.1| - 0.17 11.8 3.2 1.2 9.0 0.0 3.4 4 1 0 4 4 3 0 Sugar-specific transcriptional regulator TrmB zf-RRN7 PF11781.8 gi|124027349|ref|YP_001012669.1| - 0.18 11.5 0.2 0.33 10.7 0.2 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Lar_restr_allev PF14354.6 gi|124027349|ref|YP_001012669.1| - 0.18 12.2 0.2 0.36 11.3 0.2 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.10 gi|124027349|ref|YP_001012669.1| - 0.19 11.5 0.4 0.36 10.6 0.4 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|124027349|ref|YP_001012669.1| - 0.38 10.5 3.4 3.4 7.5 0.3 2.3 1 1 2 3 3 3 0 zinc-ribbon domain B-block_TFIIIC PF04182.12 gi|124027350|ref|YP_001012670.1| - 8e-07 29.1 0.1 1.2e-06 28.6 0.1 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC RNA_pol_Rpc34 PF05158.12 gi|124027350|ref|YP_001012670.1| - 2.8e-06 27.0 0.1 0.017 14.5 0.1 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit MarR PF01047.22 gi|124027350|ref|YP_001012670.1| - 3.7e-05 23.5 0.1 5.6e-05 23.0 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|124027350|ref|YP_001012670.1| - 0.0031 17.4 0.7 0.0043 16.9 0.7 1.2 1 0 0 1 1 1 1 MarR family TRM PF02005.16 gi|124027351|ref|YP_001012671.1| - 1e-97 327.7 0.0 1.2e-97 327.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|124027351|ref|YP_001012671.1| - 2.1e-06 27.6 0.1 3.9e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|124027351|ref|YP_001012671.1| - 0.00024 20.6 0.0 0.00039 19.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|124027351|ref|YP_001012671.1| - 0.0083 15.9 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|124027351|ref|YP_001012671.1| - 0.01 15.5 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|124027351|ref|YP_001012671.1| - 0.014 15.1 0.1 0.035 13.8 0.1 1.5 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|124027351|ref|YP_001012671.1| - 0.059 12.9 0.0 0.24 10.9 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|124027351|ref|YP_001012671.1| - 0.073 14.1 0.0 0.19 12.8 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain ASL_C PF08328.11 gi|124027351|ref|YP_001012671.1| - 0.16 12.1 0.1 0.35 11.0 0.1 1.5 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal DZR PF12773.7 gi|124027351|ref|YP_001012671.1| - 0.26 11.3 1.1 0.5 10.4 1.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Oxidored_molyb PF00174.19 gi|124027352|ref|YP_001012672.1| - 5e-18 65.3 0.3 7.5e-18 64.7 0.3 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Glycos_transf_2 PF00535.26 gi|124027353|ref|YP_001012673.1| - 1.1e-14 54.6 0.1 1.9e-14 53.8 0.1 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|124027353|ref|YP_001012673.1| - 5.6e-09 35.7 0.0 1.1e-08 34.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 gi|124027353|ref|YP_001012673.1| - 2.6e-07 30.8 0.3 8.2e-07 29.1 0.3 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|124027353|ref|YP_001012673.1| - 0.00031 20.3 0.0 0.00042 19.9 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|124027353|ref|YP_001012673.1| - 0.00043 20.7 0.0 0.001 19.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 VacA PF02691.15 gi|124027353|ref|YP_001012673.1| - 0.21 9.4 0.0 0.29 8.9 0.0 1.1 1 0 0 1 1 1 0 Vacuolating cyotoxin Ribosomal_L38e PF01781.18 gi|124027354|ref|YP_001012674.1| - 6.5e-06 26.2 1.8 9.2e-06 25.7 1.7 1.4 1 1 0 1 1 1 1 Ribosomal L38e protein family DUF5093 PF17011.5 gi|124027354|ref|YP_001012674.1| - 0.0012 19.1 0.2 0.0021 18.4 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF5093) RNA_pol_RpbG PF16992.5 gi|124027356|ref|YP_001012676.1| - 8.2e-37 125.9 0.0 9.2e-37 125.7 0.0 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G RNA_pol_Rpb8 PF03870.15 gi|124027356|ref|YP_001012676.1| - 0.00023 21.3 0.1 0.38 10.9 0.0 2.1 1 1 1 2 2 2 2 RNA polymerase Rpb8 CooC_C PF15976.5 gi|124027356|ref|YP_001012676.1| - 0.00036 20.5 0.0 0.00054 19.9 0.0 1.3 1 0 0 1 1 1 1 CS1-pili formation C-terminal TOBE PF03459.17 gi|124027356|ref|YP_001012676.1| - 0.057 13.7 0.6 5.3 7.4 0.0 2.9 2 2 1 3 3 3 0 TOBE domain Lsm_C PF14894.6 gi|124027357|ref|YP_001012677.1| - 2.7e-25 87.9 0.4 4.8e-25 87.1 0.4 1.4 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.22 gi|124027357|ref|YP_001012677.1| - 2.6e-09 36.6 0.0 4e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|124027357|ref|YP_001012677.1| - 3.5e-06 27.1 0.0 6e-06 26.3 0.0 1.5 1 1 0 1 1 1 1 Ataxin 2 SM domain Gemin7 PF11095.8 gi|124027357|ref|YP_001012677.1| - 0.0067 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Gem-associated protein 7 (Gemin7) LSM14 PF12701.7 gi|124027357|ref|YP_001012677.1| - 0.029 14.5 0.0 0.061 13.4 0.0 1.8 1 1 0 1 1 1 0 Scd6-like Sm domain Hfq PF17209.3 gi|124027357|ref|YP_001012677.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Hfq protein TGT PF01702.18 gi|124027358|ref|YP_001012678.1| - 8e-74 248.9 0.0 1e-73 248.5 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|124027358|ref|YP_001012678.1| - 2.6e-11 43.6 0.3 5.8e-11 42.5 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PAC2 PF09754.9 gi|124027359|ref|YP_001012679.1| - 6.5e-33 114.5 0.0 8e-33 114.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT_C2 PF14810.6 gi|124027360|ref|YP_001012680.1| - 1.2e-19 70.2 0.0 2e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|124027360|ref|YP_001012680.1| - 7.3e-06 25.9 0.0 1.3e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|124027360|ref|YP_001012680.1| - 0.0041 17.4 0.0 0.0065 16.7 0.0 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain PUA_3 PF17785.1 gi|124027360|ref|YP_001012680.1| - 0.033 14.0 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 PUA-like domain PUCC PF03209.15 gi|124027361|ref|YP_001012681.1| - 0.0042 16.1 4.1 0.0048 16.0 4.1 1.1 1 0 0 1 1 1 1 PUCC protein Romo1 PF10247.9 gi|124027361|ref|YP_001012681.1| - 0.0062 16.9 0.2 0.0062 16.9 0.2 2.8 1 1 2 3 3 3 1 Reactive mitochondrial oxygen species modulator 1 FUN14 PF04930.15 gi|124027361|ref|YP_001012681.1| - 0.58 10.6 10.8 2.6 8.5 10.7 2.0 1 1 0 1 1 1 0 FUN14 family UPF0154 PF03672.13 gi|124027361|ref|YP_001012681.1| - 3.4 7.8 10.1 7 6.8 0.4 3.3 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0154) DUF4064 PF13273.6 gi|124027361|ref|YP_001012681.1| - 10 6.5 12.9 2.5e+02 2.0 12.9 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Beta-Casp PF10996.8 gi|124027362|ref|YP_001012682.1| - 5.1e-19 68.6 0.0 9e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|124027362|ref|YP_001012682.1| - 1.5e-16 60.0 0.0 4.1e-16 58.7 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|124027362|ref|YP_001012682.1| - 1.6e-09 38.1 1.0 9e-09 35.6 1.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|124027362|ref|YP_001012682.1| - 1.8e-09 37.3 0.0 2.9e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|124027362|ref|YP_001012682.1| - 7.6e-08 32.1 0.1 2.4e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain NAC PF01849.18 gi|124027363|ref|YP_001012683.1| - 5.3e-07 29.5 0.4 8.3e-07 28.9 0.4 1.4 1 0 0 1 1 1 1 NAC domain ATP-synt_DE_N PF02823.16 gi|124027363|ref|YP_001012683.1| - 0.0073 16.2 0.9 0.01 15.8 0.9 1.2 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HOIP-UBA PF16678.5 gi|124027363|ref|YP_001012683.1| - 0.011 15.8 0.3 0.016 15.2 0.3 1.3 1 0 0 1 1 1 0 HOIP UBA domain pair UBA_4 PF14555.6 gi|124027363|ref|YP_001012683.1| - 0.11 12.3 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 UBA-like domain CUE PF02845.16 gi|124027363|ref|YP_001012683.1| - 0.12 12.1 0.1 5.9 6.7 0.0 2.5 2 1 1 3 3 3 0 CUE domain HTH_31 PF13560.6 gi|124027364|ref|YP_001012684.1| - 7.2e-07 29.5 0.2 2.1e-06 28.0 0.2 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|124027364|ref|YP_001012684.1| - 1.2e-05 25.3 0.0 2.8e-05 24.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|124027364|ref|YP_001012684.1| - 0.00031 20.7 0.0 0.00078 19.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1902 PF08972.11 gi|124027364|ref|YP_001012684.1| - 0.026 14.5 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) Translin PF01997.16 gi|124027366|ref|YP_001012686.1| - 3.7e-09 36.9 0.0 4.3e-07 30.1 0.0 2.2 1 1 0 1 1 1 1 Translin family TPR_2 PF07719.17 gi|124027366|ref|YP_001012686.1| - 3.1e-05 23.8 0.4 0.13 12.5 0.1 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat PPR_1 PF12854.7 gi|124027366|ref|YP_001012686.1| - 0.0067 16.1 1.7 0.29 10.9 0.3 2.7 2 0 0 2 2 2 1 PPR repeat PPR PF01535.20 gi|124027366|ref|YP_001012686.1| - 0.0093 16.1 6.4 1 9.8 1.0 3.1 3 0 0 3 3 2 2 PPR repeat Spectrin_like PF18373.1 gi|124027366|ref|YP_001012686.1| - 0.0097 16.0 0.1 0.19 11.8 0.0 2.2 2 0 0 2 2 2 1 Spectrin like domain TPR_12 PF13424.6 gi|124027366|ref|YP_001012686.1| - 0.027 14.7 0.2 6.8 7.1 0.1 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|124027366|ref|YP_001012686.1| - 0.031 15.1 1.3 4.9 8.2 0.9 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|124027366|ref|YP_001012686.1| - 0.032 14.1 0.4 2.8 7.9 0.1 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 gi|124027366|ref|YP_001012686.1| - 0.032 13.9 0.3 0.45 10.2 0.1 2.1 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) TPR_16 PF13432.6 gi|124027366|ref|YP_001012686.1| - 0.045 14.4 1.2 16 6.3 0.1 3.4 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|124027366|ref|YP_001012686.1| - 0.047 13.6 2.7 2.7 8.0 0.3 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat PPR_2 PF13041.6 gi|124027366|ref|YP_001012686.1| - 0.23 11.7 0.8 31 4.9 0.0 2.7 2 0 0 2 2 2 0 PPR repeat family TPR_4 PF07721.14 gi|124027366|ref|YP_001012686.1| - 0.23 12.2 1.2 20 6.1 0.0 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_18 PF13238.6 gi|124027367|ref|YP_001012687.1| - 3.9e-20 72.7 0.0 5.6e-20 72.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|124027367|ref|YP_001012687.1| - 0.00067 19.9 0.0 0.011 16.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|124027367|ref|YP_001012687.1| - 0.012 15.0 0.0 3.5 6.9 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_33 PF13671.6 gi|124027367|ref|YP_001012687.1| - 0.014 15.6 0.2 0.071 13.3 0.2 2.2 1 1 0 1 1 1 0 AAA domain SKI PF01202.22 gi|124027367|ref|YP_001012687.1| - 0.015 15.4 0.0 0.2 11.8 0.0 2.1 2 0 0 2 2 2 0 Shikimate kinase DUF2075 PF09848.9 gi|124027367|ref|YP_001012687.1| - 0.016 14.5 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|124027367|ref|YP_001012687.1| - 0.051 14.0 0.0 0.13 12.7 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) dNK PF01712.19 gi|124027367|ref|YP_001012687.1| - 0.059 13.2 0.0 9.5 6.0 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase Mg_chelatase PF01078.21 gi|124027367|ref|YP_001012687.1| - 0.1 12.0 0.2 0.15 11.4 0.2 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|124027367|ref|YP_001012687.1| - 0.13 12.2 0.3 0.42 10.6 0.1 1.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|124027367|ref|YP_001012687.1| - 0.18 12.2 0.0 7.6 7.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain Cpn60_TCP1 PF00118.24 gi|124027368|ref|YP_001012688.1| - 1.8e-178 594.2 13.5 2.1e-178 594.0 13.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.17 gi|124027368|ref|YP_001012688.1| - 0.069 13.0 2.0 0.48 10.3 0.1 2.7 2 0 0 2 2 2 0 DAK2 domain LPD3 PF18798.1 gi|124027368|ref|YP_001012688.1| - 1.1 9.5 6.8 8.3 6.7 0.6 3.7 3 0 0 3 3 3 0 Large polyvalent protein-associated domain 3 Ribosomal_S17e PF00833.18 gi|124027369|ref|YP_001012689.1| - 8.2e-19 67.7 0.2 9e-19 67.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal S17 Pribosyltran PF00156.27 gi|124027370|ref|YP_001012690.1| - 6.3e-28 97.3 0.0 8e-28 97.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|124027370|ref|YP_001012690.1| - 0.0014 18.2 0.0 0.0018 17.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF433 PF04255.14 gi|124027370|ref|YP_001012690.1| - 0.027 14.3 0.2 0.7 9.8 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF433) HTH_Tnp_ISL3 PF13542.6 gi|124027370|ref|YP_001012690.1| - 0.045 13.2 0.0 0.13 11.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Pribosyl_synth PF14572.6 gi|124027370|ref|YP_001012690.1| - 0.09 12.8 0.1 0.15 12.1 0.0 1.4 2 0 0 2 2 2 0 Phosphoribosyl synthetase-associated domain CGI-121 PF08617.10 gi|124027371|ref|YP_001012691.1| - 0.00037 20.7 0.0 0.00043 20.5 0.0 1.2 1 0 0 1 1 1 1 Kinase binding protein CGI-121 ABC_tran PF00005.27 gi|124027372|ref|YP_001012692.1| - 3.2e-42 144.3 0.0 1.2e-20 74.4 0.0 2.3 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|124027372|ref|YP_001012692.1| - 3.7e-16 59.2 0.6 0.0001 21.8 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|124027372|ref|YP_001012692.1| - 1.4e-15 57.9 9.3 0.0024 17.8 0.0 4.2 2 2 2 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|124027372|ref|YP_001012692.1| - 1.2e-10 41.0 1.0 1.2e-10 41.0 1.0 1.8 2 0 0 2 2 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|124027372|ref|YP_001012692.1| - 2.5e-07 30.2 4.8 2.5e-07 30.2 4.8 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|124027372|ref|YP_001012692.1| - 4.4e-07 29.9 7.3 6.9e-07 29.3 7.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|124027372|ref|YP_001012692.1| - 6.4e-07 29.4 19.1 2.4e-05 24.3 9.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|124027372|ref|YP_001012692.1| - 1e-06 29.3 0.7 0.021 15.2 0.2 2.5 2 1 0 2 2 2 2 AAA ATPase domain Fer4_6 PF12837.7 gi|124027372|ref|YP_001012692.1| - 1.2e-06 28.3 11.5 0.00051 20.0 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain AAA PF00004.29 gi|124027372|ref|YP_001012692.1| - 6.5e-06 26.6 0.1 0.034 14.6 0.1 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|124027372|ref|YP_001012692.1| - 7.8e-06 25.9 0.0 0.1 12.5 0.0 2.4 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_33 PF13671.6 gi|124027372|ref|YP_001012692.1| - 2.9e-05 24.2 0.1 0.066 13.4 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|124027372|ref|YP_001012692.1| - 3.7e-05 24.0 0.8 0.37 11.1 0.0 3.2 2 1 0 2 2 2 2 AAA domain MMR_HSR1 PF01926.23 gi|124027372|ref|YP_001012692.1| - 3.8e-05 23.7 0.9 0.064 13.3 0.1 2.9 2 2 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|124027372|ref|YP_001012692.1| - 5.2e-05 23.2 0.8 0.1 12.5 0.1 3.1 3 0 0 3 3 3 2 RsgA GTPase Fer4_7 PF12838.7 gi|124027372|ref|YP_001012692.1| - 5.8e-05 23.6 7.7 0.00014 22.4 7.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_30 PF13604.6 gi|124027372|ref|YP_001012692.1| - 8e-05 22.4 0.4 0.58 9.8 0.0 2.9 2 2 1 3 3 3 2 AAA domain Fer4_9 PF13187.6 gi|124027372|ref|YP_001012692.1| - 0.00012 22.2 8.5 0.00021 21.4 8.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain SbcCD_C PF13558.6 gi|124027372|ref|YP_001012692.1| - 0.00016 21.8 0.0 0.35 11.2 0.0 2.9 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|124027372|ref|YP_001012692.1| - 0.00025 21.6 0.0 0.65 10.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain Fer4_2 PF12797.7 gi|124027372|ref|YP_001012692.1| - 0.00027 20.8 2.6 0.00027 20.8 2.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_15 PF13175.6 gi|124027372|ref|YP_001012692.1| - 0.0003 20.6 0.0 0.26 10.9 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|124027372|ref|YP_001012692.1| - 0.0005 19.8 0.4 0.28 10.9 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain Fer4_16 PF13484.6 gi|124027372|ref|YP_001012692.1| - 0.0011 19.8 6.4 0.01 16.8 0.5 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain NACHT PF05729.12 gi|124027372|ref|YP_001012692.1| - 0.0016 18.3 0.6 0.25 11.3 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_24 PF13479.6 gi|124027372|ref|YP_001012692.1| - 0.0026 17.5 0.3 0.71 9.6 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|124027372|ref|YP_001012692.1| - 0.0027 18.3 0.2 1.2 9.7 0.0 3.2 3 1 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|124027372|ref|YP_001012692.1| - 0.0043 17.4 0.1 1.6 9.1 0.0 2.4 2 0 0 2 2 2 1 RNA helicase TsaE PF02367.17 gi|124027372|ref|YP_001012692.1| - 0.014 15.4 0.2 0.07 13.1 0.0 2.1 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|124027372|ref|YP_001012692.1| - 0.018 15.1 0.3 3.5 7.7 0.0 3.2 2 1 1 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|124027372|ref|YP_001012692.1| - 0.02 15.1 1.1 3.3 7.9 0.0 3.1 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|124027372|ref|YP_001012692.1| - 0.024 14.6 0.7 1.8 8.4 0.2 2.7 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|124027372|ref|YP_001012692.1| - 0.036 14.1 1.9 12 5.8 0.1 3.6 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|124027372|ref|YP_001012692.1| - 0.037 14.1 1.4 7.5 6.6 0.1 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain RuvB_N PF05496.12 gi|124027372|ref|YP_001012692.1| - 0.049 13.4 0.1 0.38 10.5 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain MobB PF03205.14 gi|124027372|ref|YP_001012692.1| - 0.07 13.0 0.7 2.1 8.2 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B KAP_NTPase PF07693.14 gi|124027372|ref|YP_001012692.1| - 0.11 11.7 0.0 0.6 9.3 0.0 1.9 2 0 0 2 2 2 0 KAP family P-loop domain MeaB PF03308.16 gi|124027372|ref|YP_001012692.1| - 0.12 11.3 0.8 9.9 5.0 0.1 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|124027372|ref|YP_001012692.1| - 0.16 11.6 0.7 1.4 8.5 0.1 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|124027372|ref|YP_001012692.1| - 0.18 11.4 1.6 2.1 7.9 0.6 2.7 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|124027372|ref|YP_001012692.1| - 0.2 10.8 2.6 3.1 6.9 0.1 2.7 2 1 0 2 2 2 0 NB-ARC domain Fer4_4 PF12800.7 gi|124027372|ref|YP_001012692.1| - 0.46 11.1 13.6 0.25 11.9 4.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|124027372|ref|YP_001012692.1| - 2.8 8.5 8.4 14 6.3 8.4 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain N36 PF11438.8 gi|124027373|ref|YP_001012693.1| - 0.0014 18.4 2.8 0.17 11.7 0.0 3.2 3 0 0 3 3 3 2 36-mer N-terminal peptide of the N protein (N36) UPF0146 PF03686.13 gi|124027373|ref|YP_001012693.1| - 0.055 13.3 0.0 0.084 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) FBPase_3 PF01950.16 gi|124027374|ref|YP_001012694.1| - 1.1e-194 646.6 0.0 1.2e-194 646.4 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase ACD PF16671.5 gi|124027374|ref|YP_001012694.1| - 0.21 9.9 0.0 0.33 9.2 0.0 1.2 1 0 0 1 1 1 0 Actin cross-linking domain Aminotran_1_2 PF00155.21 gi|124027375|ref|YP_001012695.1| - 1.7e-41 142.6 0.0 2e-41 142.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|124027375|ref|YP_001012695.1| - 0.0055 15.6 0.0 0.0075 15.2 0.0 1.3 1 0 0 1 1 1 1 Allinase PBP PF01161.20 gi|124027377|ref|YP_001012697.1| - 1.5e-38 132.1 0.0 1.8e-38 131.8 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Pribosyltran PF00156.27 gi|124027378|ref|YP_001012698.1| - 1.6e-14 53.7 0.1 5.6e-14 51.9 0.1 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|124027378|ref|YP_001012698.1| - 0.016 14.7 0.0 0.03 13.8 0.0 1.5 1 1 0 1 1 1 0 Uracil phosphoribosyltransferase UBA_6 PF18039.1 gi|124027378|ref|YP_001012698.1| - 0.038 13.9 0.1 0.84 9.6 0.0 2.7 4 0 0 4 4 4 0 UBA-like domain Radical_SAM PF04055.21 gi|124027379|ref|YP_001012699.1| - 7.3e-19 68.8 0.0 3.9e-18 66.4 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily NRDD PF13597.6 gi|124027379|ref|YP_001012699.1| - 0.019 13.7 0.0 0.03 13.1 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Fer4_12 PF13353.6 gi|124027379|ref|YP_001012699.1| - 0.035 14.4 0.0 0.084 13.1 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain DZR PF12773.7 gi|124027379|ref|YP_001012699.1| - 0.068 13.2 0.1 0.068 13.2 0.1 2.6 3 0 0 3 3 3 0 Double zinc ribbon IBR PF01485.21 gi|124027379|ref|YP_001012699.1| - 0.078 13.2 0.3 0.078 13.2 0.3 2.0 3 0 0 3 3 3 0 IBR domain, a half RING-finger domain zf-C4_Topoisom PF01396.19 gi|124027379|ref|YP_001012699.1| - 0.12 12.2 7.9 1.8 8.4 0.1 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|124027379|ref|YP_001012699.1| - 0.18 11.2 6.5 1 8.9 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|124027379|ref|YP_001012699.1| - 0.46 10.5 5.0 1.2 9.1 0.2 2.8 3 0 0 3 3 3 0 zinc-ribbons zinc_ribbon_4 PF13717.6 gi|124027379|ref|YP_001012699.1| - 0.5 10.3 5.9 7.3 6.6 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|124027379|ref|YP_001012699.1| - 0.56 9.8 5.1 4.6 6.9 0.8 2.5 2 0 0 2 2 2 0 C2H2 type zinc-finger HypA PF01155.19 gi|124027379|ref|YP_001012699.1| - 1.2 9.1 3.1 6.3 6.9 0.1 2.8 3 0 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|124027379|ref|YP_001012699.1| - 1.4 8.8 11.1 0.79 9.5 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain HTH_23 PF13384.6 gi|124027380|ref|YP_001012700.1| - 4.4e-06 26.3 0.7 1.2e-05 25.0 0.1 2.0 2 0 0 2 2 1 1 Homeodomain-like domain HTH_38 PF13936.6 gi|124027380|ref|YP_001012700.1| - 1.5e-05 24.6 2.5 1.7e-05 24.5 0.1 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|124027380|ref|YP_001012700.1| - 3.5e-05 23.7 0.5 8.2e-05 22.6 0.1 1.8 2 0 0 2 2 1 1 Winged helix-turn helix HTH_5 PF01022.20 gi|124027380|ref|YP_001012700.1| - 4.3e-05 23.3 0.1 0.00033 20.5 0.0 2.5 3 0 0 3 3 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|124027380|ref|YP_001012700.1| - 5.9e-05 23.1 0.9 0.0084 16.2 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|124027380|ref|YP_001012700.1| - 0.00025 21.5 5.5 0.0015 19.0 5.5 2.3 1 1 0 1 1 1 1 Helix-turn-helix domain YabA PF06156.13 gi|124027380|ref|YP_001012700.1| - 0.00038 21.0 8.0 0.00047 20.7 6.5 1.7 2 0 0 2 2 1 1 Initiation control protein YabA DUF3584 PF12128.8 gi|124027380|ref|YP_001012700.1| - 0.00054 17.6 9.4 0.00057 17.6 9.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Spc7 PF08317.11 gi|124027380|ref|YP_001012700.1| - 0.00081 18.4 8.6 0.00095 18.1 8.6 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein HTH_24 PF13412.6 gi|124027380|ref|YP_001012700.1| - 0.0013 18.2 0.6 0.016 14.8 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|124027380|ref|YP_001012700.1| - 0.0018 18.2 1.9 0.0035 17.3 0.0 2.5 3 0 0 3 3 1 1 HTH domain GerE PF00196.19 gi|124027380|ref|YP_001012700.1| - 0.0019 17.7 0.1 0.0049 16.4 0.0 1.7 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family HTH_28 PF13518.6 gi|124027380|ref|YP_001012700.1| - 0.0026 17.8 0.1 0.0074 16.4 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|124027380|ref|YP_001012700.1| - 0.0037 17.0 0.0 0.01 15.6 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|124027380|ref|YP_001012700.1| - 0.004 16.8 0.1 0.004 16.8 0.1 2.8 3 0 0 3 3 2 1 Sigma-70, region 4 FapA PF03961.13 gi|124027380|ref|YP_001012700.1| - 0.0049 15.5 4.5 0.0057 15.3 4.5 1.2 1 0 0 1 1 1 1 Flagellar Assembly Protein A CASP_C PF08172.12 gi|124027380|ref|YP_001012700.1| - 0.0051 16.2 5.0 0.0078 15.6 5.0 1.2 1 0 0 1 1 1 1 CASP C terminal Terminase_5 PF06056.12 gi|124027380|ref|YP_001012700.1| - 0.0071 16.2 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4 PF04545.16 gi|124027380|ref|YP_001012700.1| - 0.0081 15.7 2.7 0.011 15.2 0.1 2.6 3 0 0 3 3 1 1 Sigma-70, region 4 GAS PF13851.6 gi|124027380|ref|YP_001012700.1| - 0.0085 15.5 9.3 0.015 14.7 9.3 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Cluap1 PF10234.9 gi|124027380|ref|YP_001012700.1| - 0.0087 15.5 6.9 0.011 15.2 6.9 1.1 1 0 0 1 1 1 1 Clusterin-associated protein-1 GrpE PF01025.19 gi|124027380|ref|YP_001012700.1| - 0.0096 15.6 8.8 0.0096 15.6 8.8 1.7 2 0 0 2 2 1 1 GrpE HTH_7 PF02796.15 gi|124027380|ref|YP_001012700.1| - 0.0098 16.0 0.0 0.025 14.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase BLOC1_2 PF10046.9 gi|124027380|ref|YP_001012700.1| - 0.011 16.0 6.4 0.028 14.7 6.4 1.7 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GP20 PF06810.11 gi|124027380|ref|YP_001012700.1| - 0.015 15.1 7.4 0.025 14.4 7.4 1.4 1 0 0 1 1 1 0 Phage minor structural protein GP20 Seryl_tRNA_N PF02403.22 gi|124027380|ref|YP_001012700.1| - 0.017 15.3 6.9 0.038 14.2 6.9 1.7 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain ADIP PF11559.8 gi|124027380|ref|YP_001012700.1| - 0.018 15.1 9.3 0.038 14.1 9.3 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding TolA_bind_tri PF16331.5 gi|124027380|ref|YP_001012700.1| - 0.019 15.0 7.2 0.044 13.9 7.2 1.5 1 0 0 1 1 1 0 TolA binding protein trimerisation FlaC_arch PF05377.11 gi|124027380|ref|YP_001012700.1| - 0.027 14.9 4.8 0.075 13.4 2.8 2.6 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) Shugoshin_N PF07558.11 gi|124027380|ref|YP_001012700.1| - 0.031 14.2 2.1 0.074 12.9 2.1 1.7 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Cep57_MT_bd PF06657.13 gi|124027380|ref|YP_001012700.1| - 0.033 14.6 7.4 0.074 13.5 7.4 1.6 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 MarR_2 PF12802.7 gi|124027380|ref|YP_001012700.1| - 0.034 14.0 1.0 0.064 13.1 0.1 1.9 2 1 0 2 2 1 0 MarR family HTH_8 PF02954.19 gi|124027380|ref|YP_001012700.1| - 0.046 13.5 0.2 0.046 13.5 0.2 3.2 4 1 0 4 4 2 0 Bacterial regulatory protein, Fis family DUF1635 PF07795.11 gi|124027380|ref|YP_001012700.1| - 0.048 13.5 4.7 0.069 13.0 4.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1635) Lipoprotein_6 PF01441.19 gi|124027380|ref|YP_001012700.1| - 0.05 13.6 3.3 0.078 13.0 2.8 1.6 1 1 0 1 1 1 0 Lipoprotein DASH_Spc19 PF08287.11 gi|124027380|ref|YP_001012700.1| - 0.05 13.5 6.7 0.099 12.5 6.7 1.4 1 0 0 1 1 1 0 Spc19 Spc29 PF17082.5 gi|124027380|ref|YP_001012700.1| - 0.055 13.3 0.7 0.065 13.1 0.7 1.3 1 0 0 1 1 1 0 Spindle Pole Component 29 HTH_IclR PF09339.10 gi|124027380|ref|YP_001012700.1| - 0.058 13.2 0.1 0.15 11.9 0.1 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HAUS-augmin3 PF14932.6 gi|124027380|ref|YP_001012700.1| - 0.059 12.9 7.9 0.12 12.0 7.9 1.5 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Macoilin PF09726.9 gi|124027380|ref|YP_001012700.1| - 0.06 11.9 4.0 0.061 11.9 4.0 1.2 1 0 0 1 1 1 0 Macoilin family HTH_17 PF12728.7 gi|124027380|ref|YP_001012700.1| - 0.065 13.4 0.6 0.18 12.0 0.1 2.1 2 1 0 2 2 1 0 Helix-turn-helix domain V_ATPase_I PF01496.19 gi|124027380|ref|YP_001012700.1| - 0.067 11.1 2.0 0.076 10.9 2.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4795 PF16043.5 gi|124027380|ref|YP_001012700.1| - 0.072 12.7 6.0 0.097 12.3 5.2 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4795) EzrA PF06160.12 gi|124027380|ref|YP_001012700.1| - 0.086 11.0 11.3 0.035 12.3 9.1 1.5 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Tropomyosin PF00261.20 gi|124027380|ref|YP_001012700.1| - 0.091 12.1 16.8 0.031 13.6 14.0 1.6 2 0 0 2 2 1 0 Tropomyosin YlqD PF11068.8 gi|124027380|ref|YP_001012700.1| - 0.094 13.1 6.1 0.24 11.8 6.1 1.7 1 0 0 1 1 1 0 YlqD protein IL10 PF00726.17 gi|124027380|ref|YP_001012700.1| - 0.094 12.2 0.9 0.16 11.4 0.9 1.3 1 0 0 1 1 1 0 Interleukin 10 HTH_22 PF13309.6 gi|124027380|ref|YP_001012700.1| - 0.099 12.7 0.3 2.1 8.5 0.0 2.8 2 2 0 2 2 2 0 HTH domain AAA_23 PF13476.6 gi|124027380|ref|YP_001012700.1| - 0.1 13.1 6.9 0.13 12.7 6.9 1.2 1 0 0 1 1 1 0 AAA domain Mer2 PF09074.10 gi|124027380|ref|YP_001012700.1| - 0.1 12.4 7.2 0.97 9.2 6.3 2.0 1 1 1 2 2 2 0 Mer2 DUF1759 PF03564.15 gi|124027380|ref|YP_001012700.1| - 0.12 12.4 1.6 0.19 11.7 0.8 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF1759) HTH_31 PF13560.6 gi|124027380|ref|YP_001012700.1| - 0.12 12.7 0.4 0.12 12.7 0.4 2.3 2 0 0 2 2 1 0 Helix-turn-helix domain EMP24_GP25L PF01105.24 gi|124027380|ref|YP_001012700.1| - 0.14 12.1 2.4 0.22 11.5 2.2 1.4 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD HTH_Tnp_Tc3_1 PF11427.8 gi|124027380|ref|YP_001012700.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Tc3 transposase Snapin_Pallidin PF14712.6 gi|124027380|ref|YP_001012700.1| - 0.16 12.4 6.4 0.3 11.5 6.4 1.5 1 0 0 1 1 1 0 Snapin/Pallidin SlyX PF04102.12 gi|124027380|ref|YP_001012700.1| - 0.18 12.4 8.0 0.78 10.4 8.0 2.1 1 1 0 1 1 1 0 SlyX DUF16 PF01519.16 gi|124027380|ref|YP_001012700.1| - 0.19 12.3 7.0 0.42 11.1 7.0 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 ISG65-75 PF11727.8 gi|124027380|ref|YP_001012700.1| - 0.22 10.7 6.5 0.05 12.8 3.5 1.4 2 0 0 2 2 1 0 Invariant surface glycoprotein Spc24 PF08286.11 gi|124027380|ref|YP_001012700.1| - 0.23 11.7 8.5 0.46 10.7 8.5 1.6 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 DUF2316 PF10078.9 gi|124027380|ref|YP_001012700.1| - 0.23 11.7 2.1 4.9 7.5 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) ATG16 PF08614.11 gi|124027380|ref|YP_001012700.1| - 0.26 11.5 14.6 0.34 11.1 14.6 1.3 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Exonuc_VII_L PF02601.15 gi|124027380|ref|YP_001012700.1| - 0.26 10.8 4.6 0.32 10.5 4.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Vps53_N PF04100.12 gi|124027380|ref|YP_001012700.1| - 0.27 10.2 3.7 2.3 7.1 2.7 2.0 2 0 0 2 2 2 0 Vps53-like, N-terminal Jnk-SapK_ap_N PF09744.9 gi|124027380|ref|YP_001012700.1| - 0.27 11.5 14.6 0.15 12.3 12.8 1.5 2 0 0 2 2 1 0 JNK_SAPK-associated protein-1 NYD-SP28_assoc PF14775.6 gi|124027380|ref|YP_001012700.1| - 0.27 11.4 4.3 0.69 10.1 4.3 1.8 1 0 0 1 1 1 0 Sperm tail C-terminal domain BRE1 PF08647.11 gi|124027380|ref|YP_001012700.1| - 0.32 11.1 13.2 0.56 10.3 11.7 2.1 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase Syntaxin-6_N PF09177.11 gi|124027380|ref|YP_001012700.1| - 0.33 11.5 3.9 0.6 10.7 3.4 1.8 1 1 0 1 1 1 0 Syntaxin 6, N-terminal OmpH PF03938.14 gi|124027380|ref|YP_001012700.1| - 0.35 11.2 15.5 0.13 12.6 12.9 1.6 2 0 0 2 2 1 0 Outer membrane protein (OmpH-like) Fib_alpha PF08702.10 gi|124027380|ref|YP_001012700.1| - 0.39 10.9 2.5 0.77 9.9 1.9 1.7 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family FAM76 PF16046.5 gi|124027380|ref|YP_001012700.1| - 0.39 10.0 2.9 0.42 9.9 2.9 1.2 1 0 0 1 1 1 0 FAM76 protein CCDC-167 PF15188.6 gi|124027380|ref|YP_001012700.1| - 0.46 10.9 10.9 0.093 13.1 5.9 2.3 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 Fzo_mitofusin PF04799.13 gi|124027380|ref|YP_001012700.1| - 0.47 10.0 3.8 1 8.9 3.2 1.9 1 1 0 1 1 1 0 fzo-like conserved region Atg14 PF10186.9 gi|124027380|ref|YP_001012700.1| - 0.53 9.3 4.6 0.6 9.1 4.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 TMPIT PF07851.13 gi|124027380|ref|YP_001012700.1| - 0.55 9.4 2.5 0.89 8.7 2.5 1.3 1 0 0 1 1 1 0 TMPIT-like protein DUF1664 PF07889.12 gi|124027380|ref|YP_001012700.1| - 0.58 10.2 3.5 3 7.9 1.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF724 PF05266.14 gi|124027380|ref|YP_001012700.1| - 0.6 9.9 8.6 1.2 8.9 8.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF724) RP-C PF03428.13 gi|124027380|ref|YP_001012700.1| - 0.67 9.6 7.2 1.8 8.2 0.1 2.6 2 1 0 2 2 2 0 Replication protein C N-terminal domain TMF_DNA_bd PF12329.8 gi|124027380|ref|YP_001012700.1| - 0.71 9.9 18.1 2 8.5 18.1 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF948 PF06103.11 gi|124027380|ref|YP_001012700.1| - 0.76 10.1 4.3 0.81 10.0 0.8 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) ZapB PF06005.12 gi|124027380|ref|YP_001012700.1| - 0.8 10.2 17.5 2.4 8.7 17.5 1.9 1 0 0 1 1 1 0 Cell division protein ZapB 5_nucleotid PF05761.14 gi|124027380|ref|YP_001012700.1| - 0.98 8.2 4.3 1.3 7.8 4.3 1.2 1 0 0 1 1 1 0 5' nucleotidase family Prominin PF05478.11 gi|124027380|ref|YP_001012700.1| - 0.99 7.3 2.8 1.2 7.0 2.8 1.2 1 1 0 1 1 1 0 Prominin APG6_N PF17675.1 gi|124027380|ref|YP_001012700.1| - 1 9.9 20.2 1.1 9.8 19.2 1.7 1 1 0 1 1 1 0 Apg6 coiled-coil region CENP-H PF05837.12 gi|124027380|ref|YP_001012700.1| - 1 9.8 12.9 0.55 10.7 10.6 1.7 2 0 0 2 2 1 0 Centromere protein H (CENP-H) bZIP_1 PF00170.21 gi|124027380|ref|YP_001012700.1| - 1.1 9.4 15.4 0.13 12.4 9.5 2.4 2 1 1 3 3 2 0 bZIP transcription factor ERM PF00769.19 gi|124027380|ref|YP_001012700.1| - 1.2 8.9 17.4 2.3 8.0 17.4 1.4 1 0 0 1 1 1 0 Ezrin/radixin/moesin family CHAD PF05235.14 gi|124027380|ref|YP_001012700.1| - 1.3 8.9 12.0 0.26 11.2 6.0 2.0 1 1 1 2 2 2 0 CHAD domain DUF4164 PF13747.6 gi|124027380|ref|YP_001012700.1| - 1.3 9.3 14.1 15 6.0 14.1 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) UPF0242 PF06785.11 gi|124027380|ref|YP_001012700.1| - 1.5 8.9 13.1 1.8 8.6 12.6 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus TSC22 PF01166.18 gi|124027380|ref|YP_001012700.1| - 1.5 9.2 8.4 1.6 9.1 6.1 2.2 1 1 1 2 2 1 0 TSC-22/dip/bun family CorA PF01544.18 gi|124027380|ref|YP_001012700.1| - 1.6 8.0 4.4 1.7 7.9 2.7 1.7 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Prefoldin_2 PF01920.20 gi|124027380|ref|YP_001012700.1| - 1.7 8.6 15.7 0.5 10.4 7.0 2.7 2 1 1 3 3 2 0 Prefoldin subunit Ax_dynein_light PF10211.9 gi|124027380|ref|YP_001012700.1| - 2.2 8.2 11.3 2.8 7.9 10.8 1.4 1 1 0 1 1 1 0 Axonemal dynein light chain SseC PF04888.12 gi|124027380|ref|YP_001012700.1| - 3.2 7.3 9.3 8.9 5.8 9.3 1.8 1 1 0 1 1 1 0 Secretion system effector C (SseC) like family Trimer_CC PF08954.11 gi|124027380|ref|YP_001012700.1| - 3.4 7.3 19.5 1.9 8.1 13.4 3.1 3 1 0 3 3 2 0 Trimerisation motif XhlA PF10779.9 gi|124027380|ref|YP_001012700.1| - 4.4 7.6 10.2 1.3 9.2 5.3 2.5 2 1 1 3 3 2 0 Haemolysin XhlA DUF4140 PF13600.6 gi|124027380|ref|YP_001012700.1| - 4.4 7.8 15.2 92 3.6 12.7 3.1 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) TEX13 PF15186.6 gi|124027380|ref|YP_001012700.1| - 4.7 6.9 9.9 2.9 7.6 7.6 1.7 1 1 1 2 2 2 0 Testis-expressed sequence 13 protein family DUF5320 PF17253.2 gi|124027380|ref|YP_001012700.1| - 5.2 8.2 5.8 1.1 10.4 0.5 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5320) COG2 PF06148.11 gi|124027380|ref|YP_001012700.1| - 5.5 7.1 7.6 7.5 6.6 4.8 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF5082 PF16888.5 gi|124027380|ref|YP_001012700.1| - 5.9 7.2 10.1 12 6.2 4.1 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) PEP-utilisers_N PF05524.13 gi|124027380|ref|YP_001012700.1| - 6 7.1 13.6 4.7 7.4 0.8 2.9 1 1 2 3 3 3 0 PEP-utilising enzyme, N-terminal LPP PF04728.13 gi|124027380|ref|YP_001012700.1| - 6.4 7.2 7.1 23 5.5 5.3 2.6 2 1 0 2 2 1 0 Lipoprotein leucine-zipper DivIC PF04977.15 gi|124027380|ref|YP_001012700.1| - 7.1 6.5 19.7 0.042 13.6 8.5 2.8 3 1 1 4 4 3 0 Septum formation initiator Swi5 PF07061.11 gi|124027380|ref|YP_001012700.1| - 7.3 6.8 11.3 29 4.8 9.0 2.8 2 1 0 2 2 2 0 Swi5 DUF2203 PF09969.9 gi|124027380|ref|YP_001012700.1| - 9.1 7.0 8.8 4.5 8.0 5.4 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) Peptidase_M17 PF00883.21 gi|124027381|ref|YP_001012701.1| - 1.9e-117 392.0 0.5 2.7e-117 391.5 0.0 1.5 2 0 0 2 2 2 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 gi|124027381|ref|YP_001012701.1| - 5.2e-10 39.3 1.3 5.2e-10 39.3 1.3 2.4 2 1 1 3 3 3 1 Cytosol aminopeptidase family, N-terminal domain Pyr_redox_2 PF07992.14 gi|124027382|ref|YP_001012702.1| - 3.4e-33 115.1 0.0 5.6e-33 114.4 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|124027382|ref|YP_001012702.1| - 1.2e-10 41.8 0.2 0.00042 20.8 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|124027382|ref|YP_001012702.1| - 3.7e-08 33.5 1.9 4.1e-08 33.3 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|124027382|ref|YP_001012702.1| - 2.6e-07 30.2 0.2 0.0088 15.3 0.0 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|124027382|ref|YP_001012702.1| - 5.4e-07 29.1 0.1 0.012 14.9 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|124027382|ref|YP_001012702.1| - 4.9e-06 25.5 0.0 9.3e-06 24.6 0.0 1.4 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.24 gi|124027382|ref|YP_001012702.1| - 9.3e-06 25.5 3.9 0.00039 20.1 0.0 3.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase Shikimate_DH PF01488.20 gi|124027382|ref|YP_001012702.1| - 0.00013 22.0 0.0 0.61 10.1 0.0 3.1 2 1 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|124027382|ref|YP_001012702.1| - 0.00015 21.1 0.0 0.00048 19.5 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|124027382|ref|YP_001012702.1| - 0.00023 20.5 0.0 0.00051 19.4 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|124027382|ref|YP_001012702.1| - 0.0015 17.7 0.9 0.0068 15.5 0.0 2.4 2 1 1 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 gi|124027382|ref|YP_001012702.1| - 0.017 14.5 0.7 0.039 13.3 0.0 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase YjeF_N PF03853.15 gi|124027382|ref|YP_001012702.1| - 0.019 14.8 0.0 1.7 8.5 0.0 2.2 2 0 0 2 2 2 0 YjeF-related protein N-terminus UDPG_MGDP_dh_N PF03721.14 gi|124027382|ref|YP_001012702.1| - 0.02 14.5 0.0 0.038 13.6 0.0 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FMO-like PF00743.19 gi|124027382|ref|YP_001012702.1| - 0.028 12.8 0.0 1.2 7.5 0.0 2.0 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like TrkA_N PF02254.18 gi|124027382|ref|YP_001012702.1| - 0.03 14.6 0.0 0.8 10.0 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain ApbA PF02558.16 gi|124027382|ref|YP_001012702.1| - 0.036 13.7 0.1 0.089 12.4 0.1 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|124027382|ref|YP_001012702.1| - 0.047 12.8 1.9 0.77 8.8 0.1 2.8 2 1 1 3 3 3 0 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|124027382|ref|YP_001012702.1| - 0.048 13.0 0.1 0.38 10.1 0.0 2.3 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|124027382|ref|YP_001012702.1| - 0.049 13.6 0.0 0.049 13.6 0.0 1.8 2 0 0 2 2 1 0 FAD-NAD(P)-binding Glu_dehyd_C PF16912.5 gi|124027382|ref|YP_001012702.1| - 0.051 13.0 0.0 0.16 11.5 0.0 1.9 2 1 0 2 2 2 0 Glucose dehydrogenase C-terminus K_oxygenase PF13434.6 gi|124027382|ref|YP_001012702.1| - 0.11 11.7 0.0 1.5 7.8 0.0 2.4 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Inos-1-P_synth PF01658.17 gi|124027383|ref|YP_001012703.1| - 9.5e-22 77.3 0.0 1.5e-21 76.6 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|124027383|ref|YP_001012703.1| - 5.3e-06 26.0 0.0 1.3e-05 24.8 0.0 1.6 1 1 1 2 2 2 1 Myo-inositol-1-phosphate synthase ARL2_Bind_BART PF11527.8 gi|124027384|ref|YP_001012704.1| - 0.19 11.8 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 The ARF-like 2 binding protein BART IF-2B PF01008.17 gi|124027385|ref|YP_001012705.1| - 3.2e-90 302.2 0.2 3.7e-90 302.0 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Hexapep PF00132.24 gi|124027385|ref|YP_001012705.1| - 0.17 11.7 0.6 4.4 7.2 1.3 2.4 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) IF-2B PF01008.17 gi|124027386|ref|YP_001012706.1| - 3.3e-53 180.7 0.2 4.1e-53 180.4 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Pyr_redox PF00070.27 gi|124027386|ref|YP_001012706.1| - 0.12 13.0 0.5 0.43 11.2 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase BChl_A PF02327.17 gi|124027386|ref|YP_001012706.1| - 0.13 11.0 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 Bacteriochlorophyll A protein Amidohydro_1 PF01979.20 gi|124027387|ref|YP_001012707.1| - 6.8e-17 61.8 0.0 8.3e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|124027387|ref|YP_001012707.1| - 2.8e-09 37.0 0.0 5.3e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Amidohydrolase family MoCF_biosynth PF00994.24 gi|124027388|ref|YP_001012708.1| - 3.4e-25 88.4 0.1 4.1e-25 88.1 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Nitroreductase PF00881.24 gi|124027389|ref|YP_001012709.1| - 3.1e-32 112.0 0.0 4.7e-32 111.4 0.0 1.3 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|124027389|ref|YP_001012709.1| - 0.017 14.7 0.0 1.9 8.0 0.0 2.1 2 0 0 2 2 2 0 Putative TM nitroreductase RuBisCO_large PF00016.20 gi|124027390|ref|YP_001012710.1| - 3.8e-105 351.4 0.0 4.6e-105 351.1 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|124027390|ref|YP_001012710.1| - 6.2e-46 155.5 0.0 1.6e-45 154.1 0.0 1.7 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain LigA PF07746.11 gi|124027390|ref|YP_001012710.1| - 0.0041 17.2 0.0 0.43 10.8 0.0 2.4 2 0 0 2 2 2 2 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Peptidase_C25 PF01364.18 gi|124027391|ref|YP_001012711.1| - 1.3e-57 195.7 0.0 1.7e-57 195.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family C25 Hydrolase_3 PF08282.12 gi|124027392|ref|YP_001012712.1| - 1.4e-21 77.4 0.0 9.1e-10 38.7 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|124027392|ref|YP_001012712.1| - 2e-08 34.1 0.0 5.6e-07 29.3 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|124027392|ref|YP_001012712.1| - 1.2e-06 29.0 1.9 0.12 12.7 0.0 3.1 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|124027392|ref|YP_001012712.1| - 1.5e-06 28.7 2.7 0.0031 17.9 0.0 3.5 1 1 3 4 4 4 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|124027392|ref|YP_001012712.1| - 6.9e-05 22.9 0.0 0.00015 21.8 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|124027392|ref|YP_001012712.1| - 0.11 11.6 0.0 5.1 6.1 0.0 2.1 2 0 0 2 2 2 0 Trehalose-phosphatase CTP-dep_RFKase PF01982.16 gi|124027393|ref|YP_001012713.1| - 3.7e-25 88.4 0.0 4.7e-25 88.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 Radical_SAM PF04055.21 gi|124027394|ref|YP_001012714.1| - 4.3e-07 30.5 0.0 1.5e-06 28.7 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily SicP-binding PF09119.10 gi|124027394|ref|YP_001012714.1| - 0.07 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 SicP binding Radical_SAM PF04055.21 gi|124027395|ref|YP_001012715.1| - 0.023 15.1 0.1 0.065 13.6 0.1 2.0 1 1 0 1 1 1 0 Radical SAM superfamily Glyco_transf_4 PF13439.6 gi|124027395|ref|YP_001012715.1| - 0.14 12.1 0.6 1.1 9.2 0.3 2.5 1 1 1 2 2 2 0 Glycosyltransferase Family 4 NAD_binding_7 PF13241.6 gi|124027397|ref|YP_001012717.1| - 9e-22 77.5 0.2 1.9e-21 76.4 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|124027397|ref|YP_001012717.1| - 1e-06 29.0 0.2 2.2e-06 27.9 0.2 1.5 1 0 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|124027397|ref|YP_001012717.1| - 4.9e-06 26.8 0.0 9.6e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|124027397|ref|YP_001012717.1| - 6.1e-06 25.7 0.1 1.2e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.6 gi|124027397|ref|YP_001012717.1| - 2.7e-05 24.1 0.3 4.6e-05 23.4 0.3 1.4 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|124027397|ref|YP_001012717.1| - 0.00097 18.6 0.0 0.0027 17.2 0.0 1.6 1 1 1 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|124027397|ref|YP_001012717.1| - 0.0024 17.5 0.5 0.0067 16.0 0.2 1.8 1 1 1 2 2 2 1 Enoyl-(Acyl carrier protein) reductase 3HCDH_N PF02737.18 gi|124027397|ref|YP_001012717.1| - 0.0078 16.1 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 gi|124027397|ref|YP_001012717.1| - 0.0086 15.7 0.1 0.012 15.1 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.19 gi|124027397|ref|YP_001012717.1| - 0.016 14.3 0.0 0.026 13.5 0.0 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Semialdhyde_dh PF01118.24 gi|124027397|ref|YP_001012717.1| - 0.016 15.6 0.0 0.026 14.9 0.0 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|124027397|ref|YP_001012717.1| - 0.02 14.2 0.0 0.032 13.5 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_C PF03720.15 gi|124027397|ref|YP_001012717.1| - 0.021 15.2 0.2 0.038 14.4 0.2 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|124027397|ref|YP_001012717.1| - 0.049 14.2 0.1 0.13 12.9 0.1 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|124027397|ref|YP_001012717.1| - 0.062 14.1 0.0 0.13 13.1 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox PF00070.27 gi|124027397|ref|YP_001012717.1| - 0.072 13.7 0.1 0.17 12.5 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|124027397|ref|YP_001012717.1| - 0.073 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|124027397|ref|YP_001012717.1| - 0.087 12.2 5.8 1.2 8.5 0.1 2.2 1 1 1 2 2 2 0 ThiF family Methyltr_RsmB-F PF01189.17 gi|124027398|ref|YP_001012718.1| - 5.2e-62 209.0 0.0 9.3e-62 208.2 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|124027398|ref|YP_001012718.1| - 1.3e-09 38.0 0.0 4.1e-09 36.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.19 gi|124027398|ref|YP_001012718.1| - 3.9e-09 36.8 0.0 6.5e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltr_RsmF_N PF17125.5 gi|124027398|ref|YP_001012718.1| - 3.2e-08 33.9 0.0 1.2e-07 32.1 0.0 1.9 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Fibrillarin PF01269.17 gi|124027398|ref|YP_001012718.1| - 0.0023 17.1 0.0 0.0042 16.2 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.6 gi|124027398|ref|YP_001012718.1| - 0.0041 17.8 0.1 0.061 14.0 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain NusB PF01029.18 gi|124027398|ref|YP_001012718.1| - 0.014 15.6 0.3 0.088 13.0 0.0 2.4 3 1 0 3 3 3 0 NusB family Ubie_methyltran PF01209.18 gi|124027398|ref|YP_001012718.1| - 0.02 14.2 0.0 0.17 11.2 0.0 2.0 1 1 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_5 PF01795.19 gi|124027398|ref|YP_001012718.1| - 0.026 14.0 0.0 0.53 9.7 0.0 2.4 3 0 0 3 3 3 0 MraW methylase family MTS PF05175.14 gi|124027398|ref|YP_001012718.1| - 0.14 11.7 0.0 3.6 7.1 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|124027398|ref|YP_001012718.1| - 0.16 12.6 0.0 2 9.1 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|124027398|ref|YP_001012718.1| - 0.16 13.0 0.0 0.71 10.9 0.0 2.1 2 0 0 2 2 1 0 Methyltransferase domain TrkH PF02386.16 gi|124027401|ref|YP_001012721.1| - 2.1e-43 148.5 17.1 5.8e-24 84.4 6.7 2.3 1 1 0 2 2 2 2 Cation transport protein Peptidase_S9 PF00326.21 gi|124027402|ref|YP_001012722.1| - 1.2e-55 188.2 0.0 1.7e-55 187.8 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|124027402|ref|YP_001012722.1| - 1.2e-10 41.0 4.4 0.11 12.5 0.0 6.0 6 0 0 6 6 6 3 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|124027402|ref|YP_001012722.1| - 8.4e-10 38.7 0.3 1.8e-05 24.5 0.1 2.2 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|124027402|ref|YP_001012722.1| - 2.2e-08 34.1 0.2 1.3e-07 31.5 0.1 2.0 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|124027402|ref|YP_001012722.1| - 3e-06 26.7 0.5 0.013 14.8 0.2 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DUF2920 PF11144.8 gi|124027402|ref|YP_001012722.1| - 5.3e-05 22.6 0.0 0.0064 15.7 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) DLH PF01738.18 gi|124027402|ref|YP_001012722.1| - 0.00037 20.1 0.0 0.0011 18.6 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family PhoPQ_related PF10142.9 gi|124027402|ref|YP_001012722.1| - 0.002 16.8 0.0 0.0033 16.1 0.0 1.2 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein DPPIV_N PF00930.21 gi|124027402|ref|YP_001012722.1| - 0.013 14.3 1.2 4.4 6.0 0.0 3.6 2 1 1 4 4 4 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region AXE1 PF05448.12 gi|124027402|ref|YP_001012722.1| - 0.016 13.9 0.4 0.15 10.7 0.4 2.2 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 gi|124027402|ref|YP_001012722.1| - 0.017 15.7 0.5 0.043 14.4 0.0 2.0 2 1 1 3 3 3 0 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|124027402|ref|YP_001012722.1| - 0.12 12.3 0.0 11 5.9 0.0 2.4 1 1 0 2 2 2 0 alpha/beta hydrolase fold ANAPC4_WD40 PF12894.7 gi|124027402|ref|YP_001012722.1| - 0.15 12.4 0.0 17 5.8 0.0 2.8 3 0 0 3 3 2 0 Anaphase-promoting complex subunit 4 WD40 domain Archease PF01951.16 gi|124027403|ref|YP_001012723.1| - 9.4e-43 145.8 0.5 1.1e-42 145.5 0.5 1.1 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) INSC_LBD PF16748.5 gi|124027403|ref|YP_001012723.1| - 0.051 13.0 0.0 0.092 12.2 0.0 1.4 1 0 0 1 1 1 0 Inscuteable LGN-binding domain Flavin_Reduct PF01613.18 gi|124027404|ref|YP_001012724.1| - 1.4e-16 60.9 0.0 1.8e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain RtcB PF01139.17 gi|124027405|ref|YP_001012725.1| - 8.4e-164 545.6 0.0 9.5e-164 545.5 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Put_DNA-bind_N PF06971.13 gi|124027405|ref|YP_001012725.1| - 0.07 13.2 0.1 0.77 9.8 0.1 2.4 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus Pyr_redox_2 PF07992.14 gi|124027406|ref|YP_001012726.1| - 1.3e-22 80.4 0.0 5.4e-15 55.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|124027406|ref|YP_001012726.1| - 5.6e-07 30.0 0.1 0.00053 20.5 0.0 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|124027406|ref|YP_001012726.1| - 0.00022 21.3 0.0 0.12 12.3 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|124027406|ref|YP_001012726.1| - 0.00034 19.6 0.0 0.00063 18.7 0.0 1.4 1 0 0 1 1 1 1 Tryptophan halogenase DAO PF01266.24 gi|124027406|ref|YP_001012726.1| - 0.0033 17.1 0.0 0.15 11.6 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|124027406|ref|YP_001012726.1| - 0.009 16.2 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|124027406|ref|YP_001012726.1| - 0.044 14.2 0.0 0.089 13.2 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding HI0933_like PF03486.14 gi|124027406|ref|YP_001012726.1| - 0.14 10.9 0.1 0.4 9.3 0.0 1.7 2 0 0 2 2 2 0 HI0933-like protein FadR_C PF07840.12 gi|124027407|ref|YP_001012727.1| - 0.013 15.4 0.3 0.022 14.7 0.3 1.4 1 0 0 1 1 1 0 FadR C-terminal domain DUF1641 PF07849.11 gi|124027407|ref|YP_001012727.1| - 0.1 12.5 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1641) RNA_polI_A14 PF08203.11 gi|124027407|ref|YP_001012727.1| - 0.16 12.7 0.1 0.78 10.5 0.1 2.1 1 1 0 1 1 1 0 Yeast RNA polymerase I subunit RPA14 Glycos_trans_3N PF02885.17 gi|124027407|ref|YP_001012727.1| - 0.22 11.4 3.4 0.26 11.2 0.3 2.4 2 1 0 2 2 2 0 Glycosyl transferase family, helical bundle domain UPF0051 PF01458.17 gi|124027408|ref|YP_001012728.1| - 3.4e-40 138.0 0.2 4.6e-40 137.6 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|124027409|ref|YP_001012729.1| - 5.4e-67 225.7 0.0 6.7e-67 225.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|124027410|ref|YP_001012730.1| - 6.7e-21 75.2 0.0 8.7e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027410|ref|YP_001012730.1| - 5e-10 39.7 0.2 2e-05 24.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027410|ref|YP_001012730.1| - 3.3e-07 30.0 0.0 0.0048 16.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|124027410|ref|YP_001012730.1| - 0.00079 19.0 0.1 0.0018 17.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|124027410|ref|YP_001012730.1| - 0.003 17.8 0.2 0.05 13.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|124027410|ref|YP_001012730.1| - 0.0052 17.0 0.0 0.24 11.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|124027410|ref|YP_001012730.1| - 0.0054 17.3 0.3 0.056 14.0 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|124027410|ref|YP_001012730.1| - 0.0059 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RecA PF00154.21 gi|124027410|ref|YP_001012730.1| - 0.0064 16.0 0.0 0.025 14.0 0.0 1.8 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|124027410|ref|YP_001012730.1| - 0.0089 15.8 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|124027410|ref|YP_001012730.1| - 0.015 15.5 0.0 0.025 14.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|124027410|ref|YP_001012730.1| - 0.015 15.7 0.1 0.037 14.4 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|124027410|ref|YP_001012730.1| - 0.038 14.5 0.1 0.064 13.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|124027410|ref|YP_001012730.1| - 0.043 12.9 0.0 0.067 12.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|124027410|ref|YP_001012730.1| - 0.051 12.7 0.4 0.17 11.1 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|124027410|ref|YP_001012730.1| - 0.064 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|124027410|ref|YP_001012730.1| - 0.067 13.2 0.0 0.35 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain GGDEF_2 PF17853.1 gi|124027410|ref|YP_001012730.1| - 0.07 13.4 0.6 0.32 11.3 0.2 2.0 2 0 0 2 2 2 0 GGDEF-like domain S4 PF01479.25 gi|124027410|ref|YP_001012730.1| - 0.08 12.7 1.6 7.1 6.4 0.0 3.1 3 0 0 3 3 3 0 S4 domain APS_kinase PF01583.20 gi|124027410|ref|YP_001012730.1| - 0.088 12.7 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA PF00004.29 gi|124027410|ref|YP_001012730.1| - 0.1 13.1 0.1 0.25 11.7 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|124027410|ref|YP_001012730.1| - 0.12 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|124027410|ref|YP_001012730.1| - 0.19 11.4 0.0 1.2 8.7 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain DLIC PF05783.11 gi|124027410|ref|YP_001012730.1| - 0.24 10.2 0.0 0.32 9.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) PAPS_reduct PF01507.19 gi|124027411|ref|YP_001012731.1| - 1.8e-11 44.4 0.0 6.1e-11 42.7 0.0 1.9 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family PCP_red PF08369.10 gi|124027411|ref|YP_001012731.1| - 0.015 15.5 0.1 0.31 11.3 0.2 2.6 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit ATP_bind_3 PF01171.20 gi|124027411|ref|YP_001012731.1| - 0.038 13.7 0.0 0.091 12.5 0.0 1.6 2 0 0 2 2 2 0 PP-loop family Ribosomal_S13 PF00416.22 gi|124027412|ref|YP_001012732.1| - 1.7e-42 144.9 0.0 1.9e-42 144.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.25 gi|124027413|ref|YP_001012733.1| - 7e-15 54.5 0.2 1.4e-14 53.5 0.2 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|124027413|ref|YP_001012733.1| - 2.6e-06 28.2 0.2 3.2e-05 24.8 0.1 2.1 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain TyrRSs_C PF16714.5 gi|124027413|ref|YP_001012733.1| - 0.018 14.8 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain Ribosomal_S11 PF00411.19 gi|124027414|ref|YP_001012734.1| - 3.8e-49 165.7 1.8 4.8e-49 165.3 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|124027414|ref|YP_001012734.1| - 0.11 12.2 0.2 0.14 11.9 0.2 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) RNA_pol_A_bac PF01000.26 gi|124027415|ref|YP_001012735.1| - 1.1e-28 99.8 0.0 2.3e-28 98.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|124027415|ref|YP_001012735.1| - 3.6e-15 55.2 0.0 4.7e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Abi_C PF14355.6 gi|124027415|ref|YP_001012735.1| - 0.089 12.9 0.0 0.81 9.8 0.0 2.1 2 0 0 2 2 2 0 Abortive infection C-terminus DUF3772 PF12607.8 gi|124027415|ref|YP_001012735.1| - 0.65 9.8 3.2 1.2 8.9 3.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3772) Ribosomal_L18 PF17135.4 gi|124027416|ref|YP_001012736.1| - 6.9e-10 38.6 0.1 7.4e-10 38.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|124027416|ref|YP_001012736.1| - 8e-07 29.8 0.1 1.7e-06 28.8 0.1 1.6 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HTH_24 PF13412.6 gi|124027416|ref|YP_001012736.1| - 0.083 12.5 0.6 11 5.7 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding CaATP_NAI PF12515.8 gi|124027416|ref|YP_001012736.1| - 0.25 11.0 1.2 0.56 9.9 0.9 1.8 1 1 1 2 2 2 0 Ca2+-ATPase N terminal autoinhibitory domain Ribosomal_L13 PF00572.18 gi|124027417|ref|YP_001012737.1| - 1.1e-11 45.1 1.3 3.3e-09 37.0 1.3 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|124027418|ref|YP_001012738.1| - 1.9e-31 109.1 0.0 2.4e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|124027419|ref|YP_001012739.1| - 4e-26 91.1 0.2 4.5e-26 90.9 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|124027419|ref|YP_001012739.1| - 0.0026 18.0 0.1 0.004 17.4 0.1 1.4 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S14 PF00253.21 gi|124027419|ref|YP_001012739.1| - 0.022 14.5 1.5 2.7 7.8 0.3 2.2 1 1 1 2 2 2 0 Ribosomal protein S14p/S29e Ribosomal_S2 PF00318.20 gi|124027420|ref|YP_001012740.1| - 4.2e-27 94.8 0.1 8.6e-16 57.8 0.3 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 BRCT_3 PF18428.1 gi|124027420|ref|YP_001012740.1| - 0.18 11.9 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain Peripla_BP_4 PF13407.6 gi|124027420|ref|YP_001012740.1| - 0.19 11.3 0.7 0.28 10.7 0.7 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain Memo PF01875.17 gi|124027421|ref|YP_001012741.1| - 2.3e-78 263.1 0.0 2.7e-78 262.9 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|124027421|ref|YP_001012741.1| - 0.001 18.2 0.0 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GFO_IDH_MocA PF01408.22 gi|124027421|ref|YP_001012741.1| - 0.04 14.7 0.0 0.19 12.6 0.0 2.0 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Abhydrolase_3 PF07859.13 gi|124027421|ref|YP_001012741.1| - 0.044 13.6 0.1 0.071 13.0 0.1 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold HP_OMP_2 PF02521.14 gi|124027421|ref|YP_001012741.1| - 0.093 11.6 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Putative outer membrane protein AA_kinase PF00696.28 gi|124027423|ref|YP_001012743.1| - 1.6e-20 73.7 0.0 3.3e-20 72.7 0.0 1.5 1 1 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|124027424|ref|YP_001012744.1| - 4.6e-23 81.8 10.1 1.5e-20 73.6 10.1 2.5 1 1 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|124027424|ref|YP_001012744.1| - 0.0014 17.7 0.6 0.0014 17.7 0.6 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|124027424|ref|YP_001012744.1| - 0.0019 17.4 0.2 0.0019 17.4 0.2 1.7 2 1 1 3 3 3 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|124027424|ref|YP_001012744.1| - 0.41 9.8 2.4 0.38 9.9 0.5 1.8 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase polyprenyl_synt PF00348.17 gi|124027425|ref|YP_001012745.1| - 1.8e-73 246.8 0.0 2.2e-73 246.5 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF2118 PF09891.9 gi|124027426|ref|YP_001012746.1| - 9.3e-56 188.0 0.0 1.1e-55 187.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) Biotin_lipoyl PF00364.22 gi|124027426|ref|YP_001012746.1| - 0.0031 17.3 0.0 0.0057 16.5 0.0 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme MazE_antitoxin PF04014.18 gi|124027426|ref|YP_001012746.1| - 0.0042 17.0 0.1 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin tRNA-synt_1c PF00749.21 gi|124027427|ref|YP_001012747.1| - 1.8e-77 260.4 0.0 2.4e-77 259.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|124027427|ref|YP_001012747.1| - 4.1e-31 108.2 0.0 7.9e-31 107.3 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF4619 PF15398.6 gi|124027427|ref|YP_001012747.1| - 0.1 12.1 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4619) YqeY PF09424.10 gi|124027427|ref|YP_001012747.1| - 2.6 8.1 8.2 0.89 9.6 4.0 2.3 2 1 1 3 3 3 0 Yqey-like protein Ribosomal_L7Ae PF01248.26 gi|124027428|ref|YP_001012748.1| - 1.2e-31 108.2 0.9 1.6e-31 107.9 0.9 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|124027428|ref|YP_001012748.1| - 1.8e-05 24.5 0.0 2.8e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|124027428|ref|YP_001012748.1| - 0.0049 16.9 0.0 0.0058 16.7 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 Birna_VP2 PF01766.17 gi|124027429|ref|YP_001012749.1| - 0.024 13.6 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 Birnavirus VP2 protein EamA PF00892.20 gi|124027430|ref|YP_001012750.1| - 3.6e-22 79.0 38.2 3.8e-15 56.3 16.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|124027430|ref|YP_001012750.1| - 0.051 13.6 2.8 0.23 11.5 0.6 2.8 2 1 0 2 2 2 0 Putative transmembrane family 234 Ribosomal_S28e PF01200.18 gi|124027431|ref|YP_001012751.1| - 3.7e-30 103.7 4.3 4.4e-30 103.5 4.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|124027432|ref|YP_001012752.1| - 2.1e-23 82.3 0.9 2.2e-23 82.3 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|124027432|ref|YP_001012752.1| - 2.2e-06 27.5 1.5 2.9e-06 27.1 1.5 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-FLZ PF04570.14 gi|124027432|ref|YP_001012752.1| - 0.053 13.0 1.0 0.099 12.1 1.0 1.5 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 YHS PF04945.13 gi|124027432|ref|YP_001012752.1| - 0.058 13.5 0.2 0.08 13.1 0.2 1.3 1 0 0 1 1 1 0 YHS domain DUF2116 PF09889.9 gi|124027432|ref|YP_001012752.1| - 0.058 13.4 1.1 7.5 6.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF3268 PF11672.8 gi|124027432|ref|YP_001012752.1| - 0.086 13.2 0.2 0.086 13.2 0.2 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain NosL PF05573.12 gi|124027432|ref|YP_001012752.1| - 0.18 12.2 0.0 0.21 11.9 0.0 1.1 1 0 0 1 1 1 0 NosL VATC PF18716.1 gi|124027432|ref|YP_001012752.1| - 0.18 11.7 3.3 0.57 10.1 3.3 1.7 1 1 0 1 1 1 0 Vms1-associating treble clef domain EamA PF00892.20 gi|124027433|ref|YP_001012753.1| - 4.1e-25 88.5 47.4 1.6e-14 54.2 17.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|124027433|ref|YP_001012753.1| - 0.12 12.4 9.1 0.04 14.0 2.6 2.6 2 1 0 2 2 2 0 Putative transmembrane family 234 NDK PF00334.19 gi|124027434|ref|YP_001012754.1| - 5.4e-57 191.6 0.0 6e-57 191.4 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase HMG_box_5 PF14887.6 gi|124027434|ref|YP_001012754.1| - 0.082 12.9 0.2 0.29 11.1 0.0 1.8 2 0 0 2 2 2 0 HMG (high mobility group) box 5 MMR_HSR1_C PF08438.10 gi|124027435|ref|YP_001012755.1| - 1.7e-38 131.6 0.1 2.8e-38 131.0 0.1 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|124027435|ref|YP_001012755.1| - 1.8e-20 73.1 0.0 5.6e-20 71.5 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|124027435|ref|YP_001012755.1| - 2.2e-13 50.0 0.0 4.9e-13 48.9 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|124027435|ref|YP_001012755.1| - 3.6e-07 29.8 0.1 9.1e-05 22.0 0.0 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|124027435|ref|YP_001012755.1| - 3.3e-05 24.0 0.1 0.012 15.8 0.0 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF933) Dynamin_N PF00350.23 gi|124027435|ref|YP_001012755.1| - 0.0048 17.0 0.0 0.13 12.3 0.0 2.4 2 0 0 2 2 2 1 Dynamin family GTP_EFTU PF00009.27 gi|124027435|ref|YP_001012755.1| - 0.0065 16.0 0.1 0.17 11.4 0.0 2.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|124027435|ref|YP_001012755.1| - 0.074 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Methyltransf_25 PF13649.6 gi|124027436|ref|YP_001012756.1| - 4.3e-07 30.6 0.1 8.4e-07 29.6 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|124027436|ref|YP_001012756.1| - 2.8e-05 24.0 0.0 3.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|124027436|ref|YP_001012756.1| - 3.1e-05 24.6 0.1 6.2e-05 23.6 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|124027436|ref|YP_001012756.1| - 0.00025 21.7 0.0 0.00072 20.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|124027436|ref|YP_001012756.1| - 0.0017 17.7 0.0 0.0019 17.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|124027436|ref|YP_001012756.1| - 0.0082 15.9 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N2227 PF07942.12 gi|124027436|ref|YP_001012756.1| - 0.011 14.9 0.0 0.012 14.8 0.0 1.1 1 0 0 1 1 1 0 N2227-like protein TehB PF03848.14 gi|124027436|ref|YP_001012756.1| - 0.026 13.9 0.0 0.029 13.8 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB PCMT PF01135.19 gi|124027436|ref|YP_001012756.1| - 0.032 14.0 0.1 0.038 13.7 0.1 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|124027436|ref|YP_001012756.1| - 0.078 13.0 0.0 0.096 12.7 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|124027436|ref|YP_001012756.1| - 0.1 11.5 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_16 PF10294.9 gi|124027436|ref|YP_001012756.1| - 0.12 12.1 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Lysine methyltransferase MTS PF05175.14 gi|124027436|ref|YP_001012756.1| - 0.14 11.7 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF938 PF06080.12 gi|124027436|ref|YP_001012756.1| - 0.2 11.4 0.0 0.24 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Ribosomal_L15e PF00827.17 gi|124027438|ref|YP_001012758.1| - 1.3e-79 266.4 13.1 1.7e-79 266.0 13.1 1.2 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|124027439|ref|YP_001012759.1| - 4.3e-34 117.4 0.1 5e-34 117.1 0.1 1.0 1 0 0 1 1 1 1 RNA binding NIL PF09383.10 gi|124027439|ref|YP_001012759.1| - 0.0032 17.3 0.0 0.0069 16.2 0.0 1.7 1 1 0 1 1 1 1 NIL domain MttA_Hcf106 PF02416.16 gi|124027439|ref|YP_001012759.1| - 0.13 11.6 0.2 0.22 10.9 0.2 1.3 1 0 0 1 1 1 0 mttA/Hcf106 family RNase_P_p30 PF01876.16 gi|124027440|ref|YP_001012760.1| - 2.7e-32 112.0 0.0 3.2e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 DUF4224 PF13986.6 gi|124027440|ref|YP_001012760.1| - 0.09 12.7 0.1 4 7.4 0.0 3.0 4 0 0 4 4 4 0 Domain of unknown function (DUF4224) RNase_P_Rpp14 PF01900.19 gi|124027441|ref|YP_001012761.1| - 4.2e-15 55.8 0.1 6.4e-15 55.3 0.1 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family IMS_C PF11799.8 gi|124027441|ref|YP_001012761.1| - 0.092 13.4 0.6 0.15 12.8 0.6 1.3 1 1 0 1 1 1 0 impB/mucB/samB family C-terminal domain RibD_C PF01872.17 gi|124027442|ref|YP_001012762.1| - 2.7e-33 115.5 0.0 3.4e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 RibD C-terminal domain DHBP_synthase PF00926.19 gi|124027443|ref|YP_001012763.1| - 1.5e-44 151.8 0.0 1.8e-44 151.6 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DMRL_synthase PF00885.19 gi|124027444|ref|YP_001012764.1| - 3.3e-08 33.5 0.0 3.9e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|124027445|ref|YP_001012765.1| - 1.3e-31 109.3 0.1 1.5e-31 109.1 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DAHP_synth_1 PF00793.20 gi|124027445|ref|YP_001012765.1| - 0.028 13.3 0.2 0.73 8.6 0.0 2.0 1 1 1 2 2 2 0 DAHP synthetase I family PreAtp-grasp PF18604.1 gi|124027445|ref|YP_001012765.1| - 0.029 14.0 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 Pre ATP-grasp domain Amidohydro_1 PF01979.20 gi|124027446|ref|YP_001012766.1| - 9.8e-10 38.3 0.0 1.4e-08 34.4 0.0 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|124027446|ref|YP_001012766.1| - 0.00073 19.1 0.6 0.0034 16.9 0.0 2.0 1 1 1 2 2 2 1 Amidohydrolase family Creatininase PF02633.14 gi|124027447|ref|YP_001012767.1| - 9.9e-23 80.8 0.0 1.3e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase RHH_1 PF01402.21 gi|124027448|ref|YP_001012768.1| - 0.00056 19.7 3.9 0.00056 19.7 3.9 2.5 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family CcdA PF07362.12 gi|124027448|ref|YP_001012768.1| - 0.0012 19.3 0.6 0.0013 19.1 0.4 1.3 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA Imm70 PF15601.6 gi|124027448|ref|YP_001012768.1| - 0.047 13.2 0.1 0.052 13.1 0.1 1.0 1 0 0 1 1 1 0 Immunity protein 70 Med28 PF11594.8 gi|124027448|ref|YP_001012768.1| - 0.047 13.8 0.1 0.054 13.6 0.1 1.0 1 0 0 1 1 1 0 Mediator complex subunit 28 PIN PF01850.21 gi|124027449|ref|YP_001012769.1| - 0.083 13.4 1.8 0.094 13.2 1.8 1.1 1 0 0 1 1 1 0 PIN domain ThiF PF00899.21 gi|124027450|ref|YP_001012770.1| - 1.1e-64 218.1 0.0 1.3e-64 217.8 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|124027450|ref|YP_001012770.1| - 0.019 15.2 0.1 0.052 13.8 0.1 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ThiI PF02568.14 gi|124027451|ref|YP_001012771.1| - 9.4e-48 162.4 0.0 5.1e-47 160.0 0.0 1.8 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|124027451|ref|YP_001012771.1| - 8.1e-16 58.4 1.0 1e-14 54.9 0.1 2.3 2 1 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|124027451|ref|YP_001012771.1| - 1.4e-06 28.0 0.0 0.00076 19.0 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|124027451|ref|YP_001012771.1| - 0.036 13.8 0.0 0.12 12.1 0.0 1.9 1 1 0 1 1 1 0 PP-loop family Diphthami_syn_2 PF01902.17 gi|124027451|ref|YP_001012771.1| - 0.074 12.5 0.0 0.36 10.3 0.0 2.2 2 0 0 2 2 2 0 Diphthamide synthase NEXCaM_BD PF16644.5 gi|124027451|ref|YP_001012771.1| - 0.087 13.1 0.0 1.8 8.8 0.0 2.3 2 0 0 2 2 2 0 Regulatory region of Na+/H+ exchanger NHE binds to calmodulin RPA_C PF08784.11 gi|124027452|ref|YP_001012772.1| - 0.00013 22.5 0.0 0.0003 21.4 0.0 1.5 1 0 0 1 1 1 1 Replication protein A C terminal HTH_IclR PF09339.10 gi|124027452|ref|YP_001012772.1| - 0.00018 21.2 1.6 0.00052 19.8 1.6 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|124027452|ref|YP_001012772.1| - 0.00095 19.0 0.4 0.0024 17.7 0.4 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|124027452|ref|YP_001012772.1| - 0.0014 18.7 1.4 0.0014 18.7 1.4 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 gi|124027452|ref|YP_001012772.1| - 0.0049 16.5 1.6 0.0077 15.9 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|124027452|ref|YP_001012772.1| - 0.015 15.3 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|124027452|ref|YP_001012772.1| - 0.023 14.3 0.3 0.048 13.2 0.3 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|124027452|ref|YP_001012772.1| - 0.024 15.1 0.6 2.5 8.6 0.1 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|124027452|ref|YP_001012772.1| - 0.077 13.4 0.0 0.21 11.9 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator DprA_WH PF17782.1 gi|124027452|ref|YP_001012772.1| - 0.3 11.2 2.6 0.39 10.8 1.0 2.0 2 0 0 2 2 2 0 DprA winged helix domain Proteasome PF00227.26 gi|124027453|ref|YP_001012773.1| - 1.6e-53 181.0 0.0 2.2e-53 180.6 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|124027453|ref|YP_001012773.1| - 7.2e-15 54.3 0.2 3.4e-14 52.2 0.1 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS_C PF09377.10 gi|124027454|ref|YP_001012774.1| - 1.4e-21 76.7 0.1 2e-21 76.2 0.1 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain SBDS PF01172.18 gi|124027454|ref|YP_001012774.1| - 7.4e-21 74.0 0.0 1.3e-20 73.2 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein EFG_C PF00679.24 gi|124027454|ref|YP_001012774.1| - 0.0053 16.8 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus DUF3945 PF13101.6 gi|124027454|ref|YP_001012774.1| - 0.041 13.6 0.2 14 5.5 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3945) KH_1 PF00013.29 gi|124027455|ref|YP_001012775.1| - 2.3e-07 30.5 1.2 5.8e-07 29.2 1.2 1.8 1 1 0 1 1 1 1 KH domain KH_6 PF15985.5 gi|124027455|ref|YP_001012775.1| - 2.7e-07 30.8 0.2 5e-07 30.0 0.2 1.5 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|124027455|ref|YP_001012775.1| - 2e-06 27.5 2.4 4.5e-06 26.4 2.4 1.6 1 0 0 1 1 1 1 KH domain DUF3917 PF13055.6 gi|124027455|ref|YP_001012775.1| - 0.12 12.8 0.2 20 5.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3917) RNase_PH PF01138.21 gi|124027456|ref|YP_001012776.1| - 7.1e-37 126.9 0.1 9.4e-37 126.5 0.1 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|124027456|ref|YP_001012776.1| - 9.5e-16 57.6 0.3 2e-15 56.6 0.3 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|124027457|ref|YP_001012777.1| - 2.7e-31 108.8 0.0 4.6e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|124027457|ref|YP_001012777.1| - 2.5e-11 43.4 0.1 4.6e-11 42.6 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 SIMPL PF04402.14 gi|124027457|ref|YP_001012777.1| - 0.047 14.1 2.5 0.069 13.6 2.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF541) UPF0052 PF01933.18 gi|124027457|ref|YP_001012777.1| - 0.051 12.8 0.0 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0052 Ribosomal_L37ae PF01780.19 gi|124027458|ref|YP_001012778.1| - 2.7e-32 110.7 1.4 2.9e-32 110.6 1.4 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|124027458|ref|YP_001012778.1| - 9.3e-05 22.3 4.6 0.00015 21.7 4.6 1.4 1 1 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|124027458|ref|YP_001012778.1| - 0.0019 18.1 0.3 0.0024 17.8 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|124027458|ref|YP_001012778.1| - 0.0046 16.4 0.7 0.01 15.3 0.6 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|124027458|ref|YP_001012778.1| - 0.0095 16.3 0.7 0.017 15.5 0.7 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF4379 PF14311.6 gi|124027458|ref|YP_001012778.1| - 0.014 15.7 3.4 1.9 8.9 0.3 2.2 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zf-tcix PF14952.6 gi|124027458|ref|YP_001012778.1| - 0.092 12.4 2.9 0.48 10.1 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Ima1_N PF09779.9 gi|124027458|ref|YP_001012778.1| - 0.18 12.7 0.3 0.18 12.7 0.3 1.6 2 0 0 2 2 2 0 Ima1 N-terminal domain zf-ribbon_3 PF13248.6 gi|124027458|ref|YP_001012778.1| - 0.29 10.6 2.6 13 5.4 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HalOD2 PF18547.1 gi|124027458|ref|YP_001012778.1| - 0.3 11.0 7.5 0.76 9.7 7.5 1.7 1 1 0 1 1 1 0 Halobacterial output domain 2 CpXC PF14353.6 gi|124027458|ref|YP_001012778.1| - 0.37 10.9 1.3 3.6 7.6 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zf-RanBP PF00641.18 gi|124027458|ref|YP_001012778.1| - 0.54 9.6 3.7 0.36 10.2 0.6 2.0 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-CCHC PF00098.23 gi|124027458|ref|YP_001012778.1| - 0.66 10.2 4.4 4.3 7.6 0.5 2.4 2 1 0 2 2 2 0 Zinc knuckle zf-H2C2_2 PF13465.6 gi|124027458|ref|YP_001012778.1| - 0.89 10.1 4.9 4.2 8.0 0.8 2.7 2 1 1 3 3 3 0 Zinc-finger double domain Brix PF04427.18 gi|124027459|ref|YP_001012779.1| - 0.075 13.1 0.0 0.086 12.9 0.0 1.3 1 1 0 1 1 1 0 Brix domain Prefoldin_2 PF01920.20 gi|124027460|ref|YP_001012780.1| - 4e-17 62.1 16.0 4.5e-17 61.9 16.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit KxDL PF10241.9 gi|124027460|ref|YP_001012780.1| - 0.0084 16.4 10.0 0.024 14.9 4.6 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein FlaC_arch PF05377.11 gi|124027460|ref|YP_001012780.1| - 0.0092 16.4 11.0 0.02 15.3 3.3 2.5 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) Prefoldin PF02996.17 gi|124027460|ref|YP_001012780.1| - 0.018 15.0 12.6 0.024 14.6 4.1 2.3 1 1 1 2 2 2 0 Prefoldin subunit DNA_topoisoIV PF00521.20 gi|124027460|ref|YP_001012780.1| - 0.02 13.8 7.6 0.026 13.4 7.6 1.1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A TEX12 PF15219.6 gi|124027460|ref|YP_001012780.1| - 0.026 14.9 0.9 1.1 9.6 0.1 2.3 1 1 0 2 2 2 0 Testis-expressed 12 HlyD_2 PF12700.7 gi|124027460|ref|YP_001012780.1| - 0.029 13.1 5.5 0.036 12.8 5.5 1.1 1 0 0 1 1 1 0 HlyD family secretion protein PI3K_P85_iSH2 PF16454.5 gi|124027460|ref|YP_001012780.1| - 0.032 13.8 10.0 0.041 13.5 10.0 1.1 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Leu_zip PF15294.6 gi|124027460|ref|YP_001012780.1| - 0.043 13.3 9.1 0.052 13.1 9.1 1.1 1 0 0 1 1 1 0 Leucine zipper DLP_helical PF18709.1 gi|124027460|ref|YP_001012780.1| - 0.081 12.1 8.5 0.07 12.3 7.1 1.5 1 1 0 1 1 1 0 Dynamin-like helical domain ABC1 PF03109.16 gi|124027460|ref|YP_001012780.1| - 0.083 13.1 1.8 0.093 12.9 0.5 1.6 1 1 1 2 2 2 0 ABC1 family DHR10 PF18595.1 gi|124027460|ref|YP_001012780.1| - 0.086 12.9 15.3 0.23 11.5 6.7 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain GIT_CC PF16559.5 gi|124027460|ref|YP_001012780.1| - 0.15 11.9 11.8 0.1 12.5 5.5 2.2 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor AAA_13 PF13166.6 gi|124027460|ref|YP_001012780.1| - 0.17 10.5 6.6 0.22 10.1 6.6 1.1 1 0 0 1 1 1 0 AAA domain NYD-SP28_assoc PF14775.6 gi|124027460|ref|YP_001012780.1| - 0.19 11.9 0.2 0.19 11.9 0.2 2.8 2 1 0 2 2 2 0 Sperm tail C-terminal domain APG17 PF04108.12 gi|124027460|ref|YP_001012780.1| - 0.19 10.8 7.9 0.72 8.9 1.8 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 Spc7 PF08317.11 gi|124027460|ref|YP_001012780.1| - 0.22 10.4 16.7 1.8 7.4 17.0 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein Tektin PF03148.14 gi|124027460|ref|YP_001012780.1| - 0.24 10.1 14.0 0.98 8.1 1.3 2.0 1 1 1 2 2 2 0 Tektin family TPR_MLP1_2 PF07926.12 gi|124027460|ref|YP_001012780.1| - 0.26 11.3 15.2 0.73 9.9 15.0 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Surfac_D-trimer PF09006.11 gi|124027460|ref|YP_001012780.1| - 0.26 11.2 6.8 7.3 6.6 0.1 3.0 2 1 1 3 3 3 0 Lung surfactant protein D coiled-coil trimerisation UPF0242 PF06785.11 gi|124027460|ref|YP_001012780.1| - 0.31 11.1 13.4 0.42 10.7 13.4 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DivIVA PF05103.13 gi|124027460|ref|YP_001012780.1| - 0.34 11.0 10.6 4 7.5 4.5 2.4 2 1 0 2 2 2 0 DivIVA protein EzrA PF06160.12 gi|124027460|ref|YP_001012780.1| - 0.35 9.0 14.3 1.1 7.3 14.5 1.6 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA Nup54 PF13874.6 gi|124027460|ref|YP_001012780.1| - 0.39 10.8 12.2 9.1 6.4 12.0 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 OmpH PF03938.14 gi|124027460|ref|YP_001012780.1| - 0.45 10.8 15.2 0.26 11.6 4.8 2.1 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DASH_Dam1 PF08653.10 gi|124027460|ref|YP_001012780.1| - 0.5 10.2 4.0 1.5 8.7 0.5 2.6 2 1 1 3 3 3 0 DASH complex subunit Dam1 TssO PF17561.2 gi|124027460|ref|YP_001012780.1| - 0.53 10.4 5.9 18 5.4 6.0 2.1 1 1 0 1 1 1 0 Type VI secretion system, TssO CENP-F_leu_zip PF10473.9 gi|124027460|ref|YP_001012780.1| - 0.58 10.2 18.3 2 8.5 10.2 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tropomyosin PF00261.20 gi|124027460|ref|YP_001012780.1| - 0.63 9.4 18.8 1.4 8.2 2.4 2.0 1 1 1 2 2 2 0 Tropomyosin DUF724 PF05266.14 gi|124027460|ref|YP_001012780.1| - 0.72 9.6 12.6 3.4 7.5 4.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Syntaxin-6_N PF09177.11 gi|124027460|ref|YP_001012780.1| - 0.73 10.4 9.2 72 4.0 9.2 2.2 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DUF4164 PF13747.6 gi|124027460|ref|YP_001012780.1| - 0.78 10.1 15.1 0.53 10.6 8.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) NPV_P10 PF05531.12 gi|124027460|ref|YP_001012780.1| - 0.8 10.2 6.8 0.25 11.8 2.1 2.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein V_ATPase_I PF01496.19 gi|124027460|ref|YP_001012780.1| - 0.86 7.4 5.0 0.97 7.3 5.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Atg14 PF10186.9 gi|124027460|ref|YP_001012780.1| - 1 8.4 11.3 1.6 7.7 11.3 1.3 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Cep57_MT_bd PF06657.13 gi|124027460|ref|YP_001012780.1| - 1.1 9.7 14.1 8.5 6.9 0.5 2.6 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF4795 PF16043.5 gi|124027460|ref|YP_001012780.1| - 1.2 8.7 10.2 7.5 6.1 10.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF4140 PF13600.6 gi|124027460|ref|YP_001012780.1| - 1.3 9.6 14.3 3 8.3 5.6 2.6 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Bap31_Bap29_C PF18035.1 gi|124027460|ref|YP_001012780.1| - 1.3 9.1 11.9 5.3 7.1 8.4 2.5 2 0 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain FlxA PF14282.6 gi|124027460|ref|YP_001012780.1| - 1.5 8.9 13.0 0.16 12.0 4.6 2.2 2 0 0 2 2 2 0 FlxA-like protein Vac_Fusion PF02346.16 gi|124027460|ref|YP_001012780.1| - 1.9 8.2 9.6 2.5 7.8 4.9 2.5 1 1 2 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 FapA PF03961.13 gi|124027460|ref|YP_001012780.1| - 1.9 7.0 11.6 28 3.1 11.1 1.9 1 1 0 1 1 1 0 Flagellar Assembly Protein A YabA PF06156.13 gi|124027460|ref|YP_001012780.1| - 2.3 8.9 12.1 4 8.1 3.9 2.1 1 1 1 2 2 2 0 Initiation control protein YabA DUF2098 PF09871.9 gi|124027460|ref|YP_001012780.1| - 2.3 8.6 4.9 0.78 10.1 1.1 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2098) DUF1664 PF07889.12 gi|124027460|ref|YP_001012780.1| - 2.4 8.2 8.5 1.8 8.6 2.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Prp19 PF08606.11 gi|124027460|ref|YP_001012780.1| - 2.4 8.2 8.2 6.6 6.8 0.1 2.5 2 1 0 2 2 2 0 Prp19/Pso4-like Baculo_PEP_C PF04513.12 gi|124027460|ref|YP_001012780.1| - 2.5 8.1 8.2 12 6.0 8.2 1.8 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4446 PF14584.6 gi|124027460|ref|YP_001012780.1| - 2.7 7.9 7.9 3.8 7.5 2.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) HAUS-augmin3 PF14932.6 gi|124027460|ref|YP_001012780.1| - 3 7.3 15.5 5.3 6.5 1.9 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 TcpS PF17456.2 gi|124027460|ref|YP_001012780.1| - 3.2 7.8 6.2 1.9 8.6 3.9 1.8 1 1 1 2 2 2 0 Toxin-coregulated pilus protein S DUF3782 PF12644.7 gi|124027460|ref|YP_001012780.1| - 3.2 8.0 6.9 1.4 9.1 1.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3782) XhlA PF10779.9 gi|124027460|ref|YP_001012780.1| - 4 7.7 15.0 1.9 8.7 6.0 2.2 2 0 0 2 2 2 0 Haemolysin XhlA CREPT PF16566.5 gi|124027460|ref|YP_001012780.1| - 4.1 7.6 12.4 1.9 8.6 8.4 1.9 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour JMY PF15871.5 gi|124027460|ref|YP_001012780.1| - 4.1 6.6 13.2 5.8 6.1 13.2 1.2 1 0 0 1 1 1 0 Junction-mediating and -regulatory protein APG6_N PF17675.1 gi|124027460|ref|YP_001012780.1| - 4.2 7.9 23.6 4.9 7.7 11.7 2.0 1 1 1 2 2 2 0 Apg6 coiled-coil region Swi5 PF07061.11 gi|124027460|ref|YP_001012780.1| - 4.4 7.5 12.7 12 6.1 5.7 2.3 2 0 0 2 2 2 0 Swi5 DivIC PF04977.15 gi|124027460|ref|YP_001012780.1| - 4.4 7.1 18.3 6.1 6.7 3.8 2.7 2 1 1 3 3 3 0 Septum formation initiator Snapin_Pallidin PF14712.6 gi|124027460|ref|YP_001012780.1| - 4.5 7.8 14.2 0.69 10.4 6.9 2.2 1 1 1 2 2 2 0 Snapin/Pallidin BRCC36_C PF18110.1 gi|124027460|ref|YP_001012780.1| - 4.8 7.4 9.6 0.64 10.2 2.7 2.5 2 1 0 2 2 2 0 BRCC36 C-terminal helical domain HR1 PF02185.16 gi|124027460|ref|YP_001012780.1| - 6.2 7.0 20.3 6.8 6.9 5.3 3.4 2 2 1 3 3 3 0 Hr1 repeat Spc24 PF08286.11 gi|124027460|ref|YP_001012780.1| - 7.3 6.9 13.9 3 8.1 5.2 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 MCU PF04678.13 gi|124027460|ref|YP_001012780.1| - 7.9 6.5 7.0 15 5.6 7.1 1.5 1 1 0 1 1 1 0 Mitochondrial calcium uniporter COG2 PF06148.11 gi|124027460|ref|YP_001012780.1| - 8 6.6 8.7 8 6.5 1.9 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Ribosomal_S30AE PF02482.19 gi|124027461|ref|YP_001012781.1| - 0.0051 17.6 0.0 0.0063 17.3 0.0 1.2 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein Mst1_SARAH PF11629.8 gi|124027461|ref|YP_001012781.1| - 2.2 8.4 5.6 6.3 7.0 4.2 2.3 1 1 1 2 2 2 0 C terminal SARAH domain of Mst1 DHH PF01368.20 gi|124027462|ref|YP_001012782.1| - 6.2e-14 52.1 0.0 1.4e-13 51.0 0.0 1.6 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|124027462|ref|YP_001012782.1| - 4.1e-12 46.7 2.0 5.4e-11 43.1 1.0 2.6 3 0 0 3 3 3 1 DHHA1 domain PhdYeFM_antitox PF02604.19 gi|124027462|ref|YP_001012782.1| - 0.015 15.1 0.2 0.36 10.7 0.0 3.1 2 0 0 2 2 2 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Ribosomal_L40e PF01020.17 gi|124027464|ref|YP_001012784.1| - 9.1e-07 28.7 4.6 1.1e-06 28.4 4.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.7 gi|124027464|ref|YP_001012784.1| - 0.00071 19.5 1.4 0.00092 19.2 1.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|124027464|ref|YP_001012784.1| - 0.00086 18.9 5.0 0.0011 18.6 5.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|124027464|ref|YP_001012784.1| - 0.0043 16.3 3.7 0.0055 16.0 3.7 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DUF35_N PF12172.8 gi|124027464|ref|YP_001012784.1| - 0.0046 16.8 2.2 0.0074 16.1 1.7 1.6 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|124027464|ref|YP_001012784.1| - 0.0078 16.2 0.3 0.0082 16.2 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|124027464|ref|YP_001012784.1| - 0.022 14.1 3.5 0.029 13.8 3.5 1.3 1 0 0 1 1 1 0 zinc-ribbon domain TackOD1 PF18551.1 gi|124027464|ref|YP_001012784.1| - 0.032 13.9 0.1 0.037 13.7 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 TF_Zn_Ribbon PF08271.12 gi|124027464|ref|YP_001012784.1| - 0.043 13.3 0.6 4.1 7.0 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DHHC PF01529.20 gi|124027464|ref|YP_001012784.1| - 0.17 12.0 1.1 0.19 11.8 1.1 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase RNA_POL_M_15KD PF02150.16 gi|124027464|ref|YP_001012784.1| - 0.42 10.5 4.4 2 8.4 0.1 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit MFS_1 PF07690.16 gi|124027465|ref|YP_001012785.1| - 2.9e-06 26.5 44.6 2.9e-06 26.5 44.6 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Raco_middle PF17651.1 gi|124027465|ref|YP_001012785.1| - 0.077 12.7 1.5 11 5.7 0.5 2.3 2 0 0 2 2 2 0 RACo middle region NurA PF09376.10 gi|124027466|ref|YP_001012786.1| - 3e-11 43.5 0.3 3e-11 43.5 0.3 1.9 2 1 0 2 2 2 1 NurA domain DUF87 PF01935.17 gi|124027467|ref|YP_001012787.1| - 3.8e-15 56.6 0.0 6e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|124027467|ref|YP_001012787.1| - 1.2e-05 24.4 0.0 2.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain MeaB PF03308.16 gi|124027467|ref|YP_001012787.1| - 0.0048 15.9 0.0 0.0095 14.9 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_10 PF12846.7 gi|124027467|ref|YP_001012787.1| - 0.0063 15.5 0.2 0.45 9.4 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.6 gi|124027467|ref|YP_001012787.1| - 0.0064 16.8 0.0 0.46 10.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|124027467|ref|YP_001012787.1| - 0.011 15.6 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.18 gi|124027467|ref|YP_001012787.1| - 0.016 14.6 0.0 0.039 13.3 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|124027467|ref|YP_001012787.1| - 0.049 14.0 0.2 0.17 12.2 0.2 2.0 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.15 gi|124027467|ref|YP_001012787.1| - 0.076 13.0 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF815 PF05673.13 gi|124027467|ref|YP_001012787.1| - 0.087 12.0 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF853 PF05872.12 gi|124027467|ref|YP_001012787.1| - 0.12 11.0 0.0 0.21 10.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_30 PF13604.6 gi|124027467|ref|YP_001012787.1| - 0.15 11.7 0.0 0.38 10.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|124027467|ref|YP_001012787.1| - 0.2 12.1 0.0 0.42 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Cons_hypoth95 PF03602.15 gi|124027468|ref|YP_001012788.1| - 3.9e-13 49.4 0.0 6.9e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltrans_SAM PF10672.9 gi|124027468|ref|YP_001012788.1| - 7.7e-13 48.2 0.0 1.5e-12 47.3 0.0 1.4 1 1 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Met_10 PF02475.16 gi|124027468|ref|YP_001012788.1| - 2.4e-07 30.7 0.3 5.1e-07 29.6 0.3 1.4 1 1 0 1 1 1 1 Met-10+ like-protein PUA_3 PF17785.1 gi|124027468|ref|YP_001012788.1| - 1.1e-06 28.4 0.0 2.8e-05 23.9 0.0 2.8 3 0 0 3 3 3 1 PUA-like domain MTS PF05175.14 gi|124027468|ref|YP_001012788.1| - 4e-05 23.2 0.0 6.2e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|124027468|ref|YP_001012788.1| - 0.0025 17.1 0.0 0.0032 16.7 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_16 PF10294.9 gi|124027468|ref|YP_001012788.1| - 0.0061 16.3 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase PrmA PF06325.13 gi|124027468|ref|YP_001012788.1| - 0.022 14.2 0.0 0.033 13.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.17 gi|124027468|ref|YP_001012788.1| - 0.029 13.7 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Sm_multidrug_ex PF06695.11 gi|124027469|ref|YP_001012789.1| - 2.3e-20 73.5 5.1 3.5e-20 72.9 5.0 1.4 1 1 0 1 1 1 1 Putative small multi-drug export protein AIM24 PF01987.17 gi|124027471|ref|YP_001012791.1| - 3.5e-50 170.6 0.0 3.8e-50 170.5 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 ATPase PF06745.13 gi|124027472|ref|YP_001012792.1| - 2e-29 102.6 0.0 2.5e-29 102.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|124027472|ref|YP_001012792.1| - 7.7e-07 28.9 0.0 2.2e-06 27.4 0.0 1.8 1 1 1 2 2 2 1 AAA domain Elong_Iki1 PF10483.9 gi|124027472|ref|YP_001012792.1| - 3.2e-06 26.9 0.0 5.5e-06 26.1 0.0 1.5 1 1 0 1 1 1 1 Elongator subunit Iki1 IstB_IS21 PF01695.17 gi|124027472|ref|YP_001012792.1| - 0.00088 19.1 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein CbiA PF01656.23 gi|124027472|ref|YP_001012792.1| - 0.00093 19.3 0.0 0.0014 18.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain RNA_helicase PF00910.22 gi|124027472|ref|YP_001012792.1| - 0.003 17.9 0.0 0.0048 17.3 0.0 1.3 1 0 0 1 1 1 1 RNA helicase PAXNEB PF05625.11 gi|124027472|ref|YP_001012792.1| - 0.0036 16.5 0.0 0.21 10.7 0.0 2.0 2 0 0 2 2 2 1 PAXNEB protein AAA_5 PF07728.14 gi|124027472|ref|YP_001012792.1| - 0.0037 17.2 0.0 0.0065 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Rad51 PF08423.11 gi|124027472|ref|YP_001012792.1| - 0.004 16.4 0.1 0.26 10.5 0.0 2.3 2 0 0 2 2 2 1 Rad51 AAA_33 PF13671.6 gi|124027472|ref|YP_001012792.1| - 0.0068 16.6 0.0 0.026 14.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain TPP_enzyme_C PF02775.21 gi|124027472|ref|YP_001012792.1| - 0.0096 15.7 0.0 0.073 12.8 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAA_22 PF13401.6 gi|124027472|ref|YP_001012792.1| - 0.0098 16.2 0.1 0.038 14.3 0.0 2.0 1 1 1 2 2 2 1 AAA domain PhoH PF02562.16 gi|124027472|ref|YP_001012792.1| - 0.013 14.9 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.27 gi|124027472|ref|YP_001012792.1| - 0.016 15.8 0.1 0.04 14.4 0.1 1.4 1 1 0 1 1 1 0 ABC transporter Sigma54_activat PF00158.26 gi|124027472|ref|YP_001012792.1| - 0.016 14.9 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_16 PF13191.6 gi|124027472|ref|YP_001012792.1| - 0.016 15.6 0.0 0.026 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain DnaB_C PF03796.15 gi|124027472|ref|YP_001012792.1| - 0.018 14.4 0.0 0.036 13.4 0.0 1.5 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain MEDS PF14417.6 gi|124027472|ref|YP_001012792.1| - 0.019 14.8 0.0 0.038 13.8 0.0 1.6 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Imm47 PF15573.6 gi|124027472|ref|YP_001012792.1| - 0.062 12.8 0.0 0.11 12.0 0.0 1.5 1 1 0 1 1 1 0 Immunity protein 47 GFRP PF06399.13 gi|124027472|ref|YP_001012792.1| - 0.089 12.7 0.0 0.61 10.0 0.0 2.2 3 0 0 3 3 3 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) MeaB PF03308.16 gi|124027472|ref|YP_001012792.1| - 0.098 11.6 0.0 0.19 10.7 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|124027472|ref|YP_001012792.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|124027472|ref|YP_001012792.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|124027472|ref|YP_001012792.1| - 0.14 11.5 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|124027472|ref|YP_001012792.1| - 0.14 12.7 0.0 0.28 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|124027472|ref|YP_001012792.1| - 0.15 11.5 0.0 3.7 6.9 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Cation_efflux PF01545.21 gi|124027473|ref|YP_001012793.1| - 1.7e-15 57.3 19.9 2.6e-15 56.7 19.9 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|124027473|ref|YP_001012793.1| - 0.00011 22.2 0.0 0.0002 21.4 0.0 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter MARVEL PF01284.23 gi|124027473|ref|YP_001012793.1| - 1.7 8.6 9.2 4.7 7.2 9.1 1.7 1 1 0 1 1 1 0 Membrane-associating domain 4HBT PF03061.22 gi|124027475|ref|YP_001012795.1| - 6.5e-13 48.9 1.9 8.4e-07 29.3 0.2 2.3 2 0 0 2 2 2 2 Thioesterase superfamily ATP_bind_3 PF01171.20 gi|124027476|ref|YP_001012796.1| - 4.3e-15 55.9 0.0 6.8e-13 48.8 0.0 2.9 2 1 0 2 2 2 1 PP-loop family zn-ribbon_14 PF16503.5 gi|124027476|ref|YP_001012796.1| - 0.00081 18.8 0.9 0.00081 18.8 0.9 1.9 2 0 0 2 2 2 1 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|124027476|ref|YP_001012796.1| - 0.026 13.3 0.0 0.036 12.9 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase PAPS_reduct PF01507.19 gi|124027476|ref|YP_001012796.1| - 0.039 14.0 0.0 0.12 12.4 0.0 1.8 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family Imm61 PF15598.6 gi|124027476|ref|YP_001012796.1| - 0.14 12.1 0.0 23 4.9 0.0 2.3 2 0 0 2 2 2 0 Immunity protein 61 ThiS PF02597.20 gi|124027477|ref|YP_001012797.1| - 1.2e-06 29.1 1.2 1.4e-06 28.8 1.2 1.1 1 0 0 1 1 1 1 ThiS family Cdc6_C PF09079.11 gi|124027479|ref|YP_001012799.1| - 1.1e-21 76.6 0.2 5.9e-21 74.3 0.1 2.3 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|124027479|ref|YP_001012799.1| - 3.7e-13 50.2 0.6 1.5e-09 38.5 0.1 3.0 2 1 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|124027479|ref|YP_001012799.1| - 1.9e-11 44.4 0.0 5.6e-11 42.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|124027479|ref|YP_001012799.1| - 3e-06 27.7 0.0 0.00035 21.0 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|124027479|ref|YP_001012799.1| - 3.4e-05 23.3 0.0 0.0002 20.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|124027479|ref|YP_001012799.1| - 5.9e-05 23.1 0.0 0.00025 21.0 0.0 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|124027479|ref|YP_001012799.1| - 0.0014 17.9 0.0 0.002 17.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_32 PF13654.6 gi|124027479|ref|YP_001012799.1| - 0.0015 17.4 0.6 0.47 9.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_assoc_2 PF16193.5 gi|124027479|ref|YP_001012799.1| - 0.002 18.4 0.7 0.0043 17.4 0.1 1.9 2 0 0 2 2 1 1 AAA C-terminal domain Phage-MuB_C PF09077.11 gi|124027479|ref|YP_001012799.1| - 0.0081 16.0 0.0 0.022 14.6 0.0 1.7 1 0 0 1 1 1 1 Mu B transposition protein, C terminal Creatinase_N_2 PF16189.5 gi|124027479|ref|YP_001012799.1| - 0.017 15.2 0.0 0.054 13.6 0.0 1.8 1 1 0 1 1 1 0 Creatinase/Prolidase N-terminal domain PIF1 PF05970.14 gi|124027479|ref|YP_001012799.1| - 0.022 14.0 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase TIP49_C PF17856.1 gi|124027479|ref|YP_001012799.1| - 0.025 14.7 0.0 0.088 13.0 0.0 1.9 2 0 0 2 2 1 0 TIP49 AAA-lid domain ResIII PF04851.15 gi|124027479|ref|YP_001012799.1| - 0.056 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|124027479|ref|YP_001012799.1| - 0.063 13.0 0.3 9.8 5.9 0.1 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase Kinesin PF00225.23 gi|124027479|ref|YP_001012799.1| - 0.072 12.0 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain TIP49 PF06068.13 gi|124027479|ref|YP_001012799.1| - 0.083 12.1 0.0 3.6 6.7 0.0 2.1 2 0 0 2 2 2 0 TIP49 P-loop domain TsaE PF02367.17 gi|124027479|ref|YP_001012799.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|124027479|ref|YP_001012799.1| - 0.14 11.4 0.0 0.24 10.6 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_7 PF12775.7 gi|124027479|ref|YP_001012799.1| - 0.15 11.5 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region HTH_AsnC-type PF13404.6 gi|124027479|ref|YP_001012799.1| - 0.27 11.1 3.5 63 3.5 0.1 4.0 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HAD_2 PF13419.6 gi|124027480|ref|YP_001012800.1| - 2.1e-09 37.7 0.0 3e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|124027480|ref|YP_001012800.1| - 1.8e-08 35.0 0.0 2.7e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|124027480|ref|YP_001012800.1| - 1.4e-07 31.4 0.0 3.4e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like TrmO PF01980.16 gi|124027481|ref|YP_001012801.1| - 1.5e-28 99.4 0.0 3e-28 98.4 0.0 1.4 1 1 0 1 1 1 1 tRNA-methyltransferase O DUF5320 PF17253.2 gi|124027482|ref|YP_001012802.1| - 1.8e-05 25.7 2.6 0.00013 23.0 2.6 2.1 1 1 0 1 1 1 1 Family of unknown function (DUF5320) Fib_alpha PF08702.10 gi|124027482|ref|YP_001012802.1| - 0.00043 20.5 0.2 0.00058 20.1 0.2 1.2 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family DUF2312 PF10073.9 gi|124027482|ref|YP_001012802.1| - 0.00051 19.6 4.7 0.00071 19.2 4.7 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2312) Prefoldin_2 PF01920.20 gi|124027482|ref|YP_001012802.1| - 0.00082 19.3 5.9 0.00082 19.3 5.9 1.6 2 0 0 2 2 1 1 Prefoldin subunit Helo_like_N PF17111.5 gi|124027482|ref|YP_001012802.1| - 0.0014 18.1 0.8 0.0016 17.8 0.8 1.1 1 0 0 1 1 1 1 Fungal N-terminal domain of STAND proteins TPD52 PF04201.15 gi|124027482|ref|YP_001012802.1| - 0.01 15.5 2.4 0.012 15.3 2.4 1.1 1 0 0 1 1 1 0 Tumour protein D52 family XhlA PF10779.9 gi|124027482|ref|YP_001012802.1| - 0.026 14.7 3.3 0.035 14.3 3.3 1.2 1 0 0 1 1 1 0 Haemolysin XhlA Sec2p PF06428.11 gi|124027482|ref|YP_001012802.1| - 0.032 14.2 4.5 0.048 13.6 4.5 1.3 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p DUF2205 PF10224.9 gi|124027482|ref|YP_001012802.1| - 0.044 13.8 2.4 0.066 13.2 2.4 1.2 1 0 0 1 1 1 0 Short coiled-coil protein DUF16 PF01519.16 gi|124027482|ref|YP_001012802.1| - 0.052 14.0 0.9 0.052 14.0 0.9 1.3 2 0 0 2 2 1 0 Protein of unknown function DUF16 FapA PF03961.13 gi|124027482|ref|YP_001012802.1| - 0.061 11.9 0.8 0.067 11.8 0.8 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A VIR_N PF15912.5 gi|124027482|ref|YP_001012802.1| - 0.065 12.8 6.3 0.064 12.8 6.3 1.1 1 0 0 1 1 1 0 Virilizer, N-terminal DUF4140 PF13600.6 gi|124027482|ref|YP_001012802.1| - 0.065 13.7 0.0 0.097 13.1 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DinB_2 PF12867.7 gi|124027482|ref|YP_001012802.1| - 0.076 13.5 0.1 0.11 13.0 0.1 1.3 1 0 0 1 1 1 0 DinB superfamily SidC_N PF18219.1 gi|124027482|ref|YP_001012802.1| - 0.11 11.4 1.2 0.14 11.1 1.2 1.1 1 0 0 1 1 1 0 SidC N-terminal domain EMP24_GP25L PF01105.24 gi|124027482|ref|YP_001012802.1| - 0.13 12.2 0.9 0.16 11.9 0.9 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Metal_resist PF13801.6 gi|124027482|ref|YP_001012802.1| - 0.17 12.1 1.2 1.3 9.2 0.0 2.0 2 0 0 2 2 2 0 Heavy-metal resistance APG6_N PF17675.1 gi|124027482|ref|YP_001012802.1| - 0.87 10.1 10.4 1.1 9.8 10.4 1.3 1 1 0 1 1 1 0 Apg6 coiled-coil region Med21 PF11221.8 gi|124027482|ref|YP_001012802.1| - 2.1 8.6 7.9 0.64 10.3 3.6 1.9 2 0 0 2 2 2 0 Subunit 21 of Mediator complex SMN PF06003.12 gi|124027482|ref|YP_001012802.1| - 2.9 7.1 8.4 3.1 7.0 8.4 1.2 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) UPF0242 PF06785.11 gi|124027482|ref|YP_001012802.1| - 9.3 6.3 10.5 0.11 12.6 3.6 1.3 2 0 0 2 2 1 0 Uncharacterised protein family (UPF0242) N-terminus CitMHS PF03600.16 gi|124027483|ref|YP_001012803.1| - 6.3e-37 127.4 29.2 1.1e-36 126.6 29.2 1.3 1 0 0 1 1 1 1 Citrate transporter Lig_chan PF00060.26 gi|124027483|ref|YP_001012803.1| - 0.1 12.4 3.9 5.1 6.9 0.1 2.6 2 0 0 2 2 2 0 Ligand-gated ion channel FR47 PF08445.10 gi|124027484|ref|YP_001012804.1| - 2.3e-15 56.3 0.0 3.6e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.25 gi|124027484|ref|YP_001012804.1| - 2.1e-12 47.3 0.2 3e-12 46.8 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|124027484|ref|YP_001012804.1| - 7.6e-10 38.8 0.0 2.5e-09 37.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|124027484|ref|YP_001012804.1| - 1.8e-08 34.2 0.0 2.6e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_7 PF13508.7 gi|124027484|ref|YP_001012804.1| - 3.4e-07 30.6 0.0 6.4e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|124027484|ref|YP_001012804.1| - 0.01 15.9 0.0 0.024 14.8 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|124027484|ref|YP_001012804.1| - 0.016 15.3 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|124027484|ref|YP_001012804.1| - 0.12 11.8 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative acetyl-transferase SfsA PF03749.13 gi|124027485|ref|YP_001012805.1| - 1.9e-31 108.8 0.0 2.9e-31 108.2 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|124027485|ref|YP_001012805.1| - 8.2e-15 54.7 0.2 1.5e-14 53.9 0.2 1.4 1 0 0 1 1 1 1 SfsA N-terminal OB domain FUN14 PF04930.15 gi|124027486|ref|YP_001012806.1| - 0.44 11.0 3.4 0.88 10.0 3.4 1.5 1 0 0 1 1 1 0 FUN14 family CN_hydrolase PF00795.22 gi|124027487|ref|YP_001012807.1| - 3.2e-36 125.0 0.0 3.8e-36 124.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase ABC_tran PF00005.27 gi|124027489|ref|YP_001012809.1| - 1.3e-33 116.4 0.0 1.8e-33 116.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|124027489|ref|YP_001012809.1| - 1.5e-19 70.3 0.6 2.8e-19 69.4 0.6 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|124027489|ref|YP_001012809.1| - 2.4e-09 37.4 0.6 9.5e-06 25.6 0.0 2.5 1 1 2 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027489|ref|YP_001012809.1| - 1.1e-05 25.1 0.1 0.00027 20.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|124027489|ref|YP_001012809.1| - 0.0027 18.1 0.3 0.0064 16.9 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|124027489|ref|YP_001012809.1| - 0.0031 17.8 0.1 0.024 14.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|124027489|ref|YP_001012809.1| - 0.0049 17.3 0.0 0.039 14.4 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|124027489|ref|YP_001012809.1| - 0.026 14.3 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.14 gi|124027489|ref|YP_001012809.1| - 0.043 13.8 0.0 0.3 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|124027489|ref|YP_001012809.1| - 0.045 14.0 0.0 0.54 10.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|124027489|ref|YP_001012809.1| - 0.057 13.2 0.1 0.099 12.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain TniB PF05621.11 gi|124027489|ref|YP_001012809.1| - 0.062 12.7 0.2 2 7.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein ATPase PF06745.13 gi|124027489|ref|YP_001012809.1| - 0.084 12.2 0.4 0.32 10.3 0.2 1.9 2 0 0 2 2 2 0 KaiC Sigma54_activat PF00158.26 gi|124027489|ref|YP_001012809.1| - 0.086 12.5 0.0 1.8 8.2 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|124027489|ref|YP_001012809.1| - 0.17 12.4 0.0 0.34 11.5 0.0 1.6 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.27 gi|124027490|ref|YP_001012810.1| - 4.5e-25 88.7 0.0 6.2e-25 88.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|124027490|ref|YP_001012810.1| - 3e-22 78.9 0.5 5.6e-22 78.0 0.5 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|124027490|ref|YP_001012810.1| - 1.1e-09 38.5 0.0 7.8e-07 29.2 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|124027490|ref|YP_001012810.1| - 0.0001 22.6 0.2 0.001 19.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|124027490|ref|YP_001012810.1| - 0.0026 17.2 0.0 0.038 13.4 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_7 PF12775.7 gi|124027490|ref|YP_001012810.1| - 0.025 14.1 0.0 0.053 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|124027490|ref|YP_001012810.1| - 0.045 14.1 0.0 0.12 12.8 0.0 1.7 2 0 0 2 2 2 0 RNA helicase ATP-synt_ab PF00006.25 gi|124027490|ref|YP_001012810.1| - 0.05 13.2 0.1 0.065 12.9 0.1 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AP_endonuc_2_N PF07582.12 gi|124027490|ref|YP_001012810.1| - 0.077 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus AAA_5 PF07728.14 gi|124027490|ref|YP_001012810.1| - 0.086 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|124027490|ref|YP_001012810.1| - 0.14 11.9 0.1 0.39 10.4 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|124027490|ref|YP_001012810.1| - 0.17 11.7 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|124027490|ref|YP_001012810.1| - 0.17 12.3 0.1 1.5 9.3 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) GETHR PF05671.11 gi|124027490|ref|YP_001012810.1| - 0.47 9.9 2.7 0.93 8.9 2.7 1.4 1 0 0 1 1 1 0 GETHR pentapeptide repeat (5 copies) BPD_transp_1 PF00528.22 gi|124027491|ref|YP_001012811.1| - 2.9e-29 102.1 14.0 2.9e-29 102.1 14.0 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|124027491|ref|YP_001012811.1| - 2.5e-07 30.6 0.0 2.5e-07 30.6 0.0 2.9 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|124027492|ref|YP_001012812.1| - 3.4e-38 131.2 21.6 3.4e-38 131.2 21.6 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|124027493|ref|YP_001012813.1| - 5.2e-61 206.7 12.0 2.9e-60 204.2 12.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PepSY_TM PF03929.16 gi|124027493|ref|YP_001012813.1| - 0.015 15.0 0.1 0.022 14.4 0.1 1.2 1 0 0 1 1 1 0 PepSY-associated TM region DUF4106 PF13388.6 gi|124027493|ref|YP_001012813.1| - 0.2 10.9 2.5 0.31 10.2 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) Usp PF00582.26 gi|124027494|ref|YP_001012814.1| - 5.8e-36 124.1 4.8 7e-22 78.5 0.1 3.0 2 1 0 2 2 2 2 Universal stress protein family DUF724 PF05266.14 gi|124027494|ref|YP_001012814.1| - 0.15 11.8 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) PNP_UDP_1 PF01048.20 gi|124027495|ref|YP_001012815.1| - 1.5e-08 34.2 0.0 1.9e-08 33.9 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Helicase_RecD PF05127.14 gi|124027496|ref|YP_001012816.1| - 8e-42 143.1 0.0 1.3e-41 142.4 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|124027496|ref|YP_001012816.1| - 4.8e-13 49.0 1.9 2e-06 27.4 0.0 3.3 1 1 2 3 3 3 3 GNAT acetyltransferase 2 Acetyltransf_1 PF00583.25 gi|124027496|ref|YP_001012816.1| - 8.5e-09 35.7 0.1 2.7e-08 34.1 0.1 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family DUF1726 PF08351.11 gi|124027496|ref|YP_001012816.1| - 3.9e-07 29.9 0.0 1e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.7 gi|124027496|ref|YP_001012816.1| - 6.7e-06 26.4 0.0 2.3e-05 24.8 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|124027496|ref|YP_001012816.1| - 0.00019 21.3 0.0 0.00054 19.9 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_30 PF13604.6 gi|124027496|ref|YP_001012816.1| - 0.00051 19.8 0.1 0.0012 18.6 0.1 1.6 1 0 0 1 1 1 1 AAA domain Sigma70_r4_2 PF08281.12 gi|124027496|ref|YP_001012816.1| - 0.0018 17.9 0.1 0.0047 16.6 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Acetyltransf_9 PF13527.7 gi|124027496|ref|YP_001012816.1| - 0.0057 16.7 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Sigma70_r4 PF04545.16 gi|124027496|ref|YP_001012816.1| - 0.0059 16.1 0.2 0.016 14.7 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Acetyltransf_CG PF14542.6 gi|124027496|ref|YP_001012816.1| - 0.0085 16.2 0.1 0.019 15.1 0.1 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|124027496|ref|YP_001012816.1| - 0.023 14.6 0.0 0.065 13.2 0.0 1.7 1 0 0 1 1 1 0 FR47-like protein AAA_22 PF13401.6 gi|124027496|ref|YP_001012816.1| - 0.045 14.0 0.1 0.68 10.2 0.0 2.7 2 1 0 2 2 2 0 AAA domain DUF4350 PF14258.6 gi|124027496|ref|YP_001012816.1| - 0.076 13.5 3.2 14 6.2 0.0 3.7 4 0 0 4 4 3 0 Domain of unknown function (DUF4350) ABC_tran PF00005.27 gi|124027497|ref|YP_001012817.1| - 1.4e-33 116.3 0.0 1.9e-33 115.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027497|ref|YP_001012817.1| - 2e-15 57.4 0.7 1.6e-07 31.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027497|ref|YP_001012817.1| - 7.6e-07 28.8 0.2 0.001 18.6 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|124027497|ref|YP_001012817.1| - 1.8e-05 25.0 0.1 0.0001 22.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|124027497|ref|YP_001012817.1| - 7.3e-05 23.2 0.0 0.00018 21.9 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|124027497|ref|YP_001012817.1| - 7.4e-05 22.6 0.2 0.0082 15.9 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|124027497|ref|YP_001012817.1| - 0.00021 21.9 0.1 0.00034 21.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|124027497|ref|YP_001012817.1| - 0.00026 20.7 0.1 0.00053 19.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|124027497|ref|YP_001012817.1| - 0.00054 18.9 0.3 0.43 9.3 0.4 2.2 2 1 0 2 2 2 2 Predicted ATPase of the ABC class Dynamin_N PF00350.23 gi|124027497|ref|YP_001012817.1| - 0.0013 18.9 0.0 0.0021 18.1 0.0 1.4 1 1 0 1 1 1 1 Dynamin family AAA_33 PF13671.6 gi|124027497|ref|YP_001012817.1| - 0.0088 16.2 0.2 0.028 14.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.7 gi|124027497|ref|YP_001012817.1| - 0.016 14.2 0.4 0.034 13.1 0.2 1.6 2 0 0 2 2 2 0 AAA-like domain NACHT PF05729.12 gi|124027497|ref|YP_001012817.1| - 0.018 15.0 0.1 0.04 13.9 0.1 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|124027497|ref|YP_001012817.1| - 0.019 14.2 0.6 0.045 12.9 0.1 1.8 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|124027497|ref|YP_001012817.1| - 0.019 14.7 0.5 0.086 12.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|124027497|ref|YP_001012817.1| - 0.035 14.2 0.4 0.081 13.0 0.2 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|124027497|ref|YP_001012817.1| - 0.043 13.8 0.4 0.33 11.0 0.2 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|124027497|ref|YP_001012817.1| - 0.049 13.2 0.3 0.11 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|124027497|ref|YP_001012817.1| - 0.1 12.5 0.1 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_35 PF14516.6 gi|124027497|ref|YP_001012817.1| - 0.1 11.4 0.2 0.53 9.1 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_13 PF13166.6 gi|124027497|ref|YP_001012817.1| - 0.11 11.2 0.2 9.8 4.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|124027497|ref|YP_001012817.1| - 0.11 12.4 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|124027497|ref|YP_001012817.1| - 0.11 12.1 0.1 0.45 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|124027497|ref|YP_001012817.1| - 0.11 12.7 0.2 0.87 9.9 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|124027497|ref|YP_001012817.1| - 0.12 12.1 0.1 0.34 10.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|124027497|ref|YP_001012817.1| - 0.12 12.8 0.2 1.5 9.3 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|124027497|ref|YP_001012817.1| - 0.16 11.5 0.7 0.24 11.0 0.2 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|124027498|ref|YP_001012818.1| - 3.1e-28 99.0 0.0 3.9e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027498|ref|YP_001012818.1| - 4.1e-11 43.2 2.7 0.0001 22.2 0.4 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|124027498|ref|YP_001012818.1| - 1.7e-06 27.8 0.4 3.3e-06 26.9 0.4 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|124027498|ref|YP_001012818.1| - 0.00045 19.7 0.1 0.18 11.2 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|124027498|ref|YP_001012818.1| - 0.00075 19.1 0.0 0.95 9.0 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|124027498|ref|YP_001012818.1| - 0.0016 18.2 0.0 0.0028 17.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|124027498|ref|YP_001012818.1| - 0.0033 18.0 0.0 0.0051 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|124027498|ref|YP_001012818.1| - 0.021 13.9 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|124027498|ref|YP_001012818.1| - 0.023 15.0 0.1 0.088 13.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|124027498|ref|YP_001012818.1| - 0.041 13.6 0.0 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|124027498|ref|YP_001012818.1| - 0.057 13.0 0.0 0.09 12.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|124027498|ref|YP_001012818.1| - 0.075 13.4 0.0 0.13 12.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|124027498|ref|YP_001012818.1| - 0.096 13.1 0.0 0.28 11.6 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|124027498|ref|YP_001012818.1| - 0.12 11.5 0.2 0.27 10.4 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.9 gi|124027498|ref|YP_001012818.1| - 0.18 10.6 0.4 4.8 5.9 0.0 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class DLIC PF05783.11 gi|124027498|ref|YP_001012818.1| - 0.27 10.0 0.0 0.51 9.1 0.0 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Peripla_BP_6 PF13458.6 gi|124027499|ref|YP_001012819.1| - 1.4e-35 123.6 0.1 1.8e-35 123.2 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|124027499|ref|YP_001012819.1| - 8.9e-35 120.4 0.0 1.1e-34 120.1 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|124027499|ref|YP_001012819.1| - 1.7e-08 33.9 0.0 2.4e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.13 gi|124027499|ref|YP_001012819.1| - 6.7e-05 21.9 0.1 0.00039 19.3 0.0 1.9 2 0 0 2 2 2 1 LppC putative lipoprotein YjeF_N PF03853.15 gi|124027499|ref|YP_001012819.1| - 0.041 13.8 0.1 0.097 12.5 0.0 1.6 2 0 0 2 2 2 0 YjeF-related protein N-terminus YjbE PF11106.8 gi|124027499|ref|YP_001012819.1| - 0.11 12.7 1.1 0.28 11.4 1.1 1.6 1 0 0 1 1 1 0 Exopolysaccharide production protein YjbE CdhD PF03599.16 gi|124027499|ref|YP_001012819.1| - 0.13 10.9 0.0 0.25 10.0 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit NifU PF01106.17 gi|124027500|ref|YP_001012820.1| - 0.15 12.2 0.2 0.41 10.8 0.2 1.7 1 1 0 1 1 1 0 NifU-like domain Peptidase_M54 PF07998.11 gi|124027501|ref|YP_001012821.1| - 1.9e-29 103.0 0.0 2.4e-29 102.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|124027501|ref|YP_001012821.1| - 9.1e-05 22.4 0.0 0.0001 22.2 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.9 gi|124027501|ref|YP_001012821.1| - 0.0013 17.8 0.0 0.0018 17.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.6 gi|124027501|ref|YP_001012821.1| - 0.043 14.3 0.0 0.055 14.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|124027501|ref|YP_001012821.1| - 0.084 12.1 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Met-zincin Metallopep PF12044.8 gi|124027501|ref|YP_001012821.1| - 0.093 11.3 0.4 0.13 10.8 0.4 1.1 1 0 0 1 1 1 0 Putative peptidase family Chol_subst-bind PF09129.11 gi|124027501|ref|YP_001012821.1| - 0.19 10.6 0.0 0.26 10.2 0.0 1.1 1 0 0 1 1 1 0 Cholesterol oxidase, substrate-binding Peptidase_M43 PF05572.13 gi|124027501|ref|YP_001012821.1| - 0.24 11.3 0.0 0.43 10.5 0.0 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A GM_CSF PF01109.17 gi|124027502|ref|YP_001012823.1| - 0.014 15.5 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 Granulocyte-macrophage colony-stimulating factor NRBF2_MIT PF17169.4 gi|124027502|ref|YP_001012823.1| - 0.02 15.1 0.5 0.028 14.6 0.5 1.2 1 0 0 1 1 1 0 MIT domain of nuclear receptor-binding factor 2 Peptidase_M29 PF02073.15 gi|124027504|ref|YP_001012824.1| - 1.3e-106 356.8 0.0 1.5e-106 356.6 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) TrkA_N PF02254.18 gi|124027505|ref|YP_001012825.1| - 4.4e-19 68.8 0.2 9.8e-19 67.7 0.2 1.6 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|124027505|ref|YP_001012825.1| - 2.7e-15 56.1 13.5 3.2e-15 55.9 10.4 2.2 1 1 1 2 2 2 2 Ion channel Ion_trans PF00520.31 gi|124027505|ref|YP_001012825.1| - 6.1e-09 35.5 0.1 8.4e-09 35.0 0.1 1.2 1 0 0 1 1 1 1 Ion transport protein TrkA_C PF02080.21 gi|124027505|ref|YP_001012825.1| - 1.9e-05 24.4 0.1 0.00019 21.2 0.0 2.4 2 0 0 2 2 2 1 TrkA-C domain Castor_Poll_mid PF06241.12 gi|124027505|ref|YP_001012825.1| - 0.011 15.6 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 Castor and Pollux, part of voltage-gated ion channel DUF2139 PF09910.9 gi|124027506|ref|YP_001012826.1| - 1.3e-152 507.9 0.0 1.6e-152 507.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) DAO PF01266.24 gi|124027507|ref|YP_001012827.1| - 1.2e-56 192.9 4.7 1.3e-56 192.7 4.7 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|124027507|ref|YP_001012827.1| - 3.7e-10 39.5 0.0 8.2e-05 22.0 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|124027507|ref|YP_001012827.1| - 8.8e-09 34.9 0.6 0.00036 19.7 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.27 gi|124027507|ref|YP_001012827.1| - 2.4e-06 28.0 0.1 0.01 16.4 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|124027507|ref|YP_001012827.1| - 3.1e-06 27.3 2.7 3.7e-06 27.1 0.3 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|124027507|ref|YP_001012827.1| - 7.8e-06 25.3 0.0 0.00018 20.8 0.0 2.1 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|124027507|ref|YP_001012827.1| - 3.7e-05 23.0 0.3 0.063 12.4 0.4 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|124027507|ref|YP_001012827.1| - 0.00019 21.5 0.4 0.017 15.1 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding GMC_oxred_N PF00732.19 gi|124027507|ref|YP_001012827.1| - 0.00039 19.9 0.1 0.0054 16.1 0.1 2.0 2 0 0 2 2 2 1 GMC oxidoreductase Lycopene_cycl PF05834.12 gi|124027507|ref|YP_001012827.1| - 0.0013 17.9 0.1 0.02 13.9 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|124027507|ref|YP_001012827.1| - 0.0014 17.9 0.0 0.059 12.6 0.0 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|124027507|ref|YP_001012827.1| - 0.0018 17.0 0.1 0.77 8.4 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|124027507|ref|YP_001012827.1| - 0.0027 17.0 0.3 0.0054 16.0 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|124027507|ref|YP_001012827.1| - 0.0081 15.6 0.3 0.037 13.4 0.3 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase MCRA PF06100.11 gi|124027507|ref|YP_001012827.1| - 0.0093 14.8 0.0 0.031 13.1 0.0 1.7 2 0 0 2 2 2 1 MCRA family Trp_halogenase PF04820.14 gi|124027507|ref|YP_001012827.1| - 0.019 13.8 0.7 0.51 9.1 0.2 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Amino_oxidase PF01593.24 gi|124027507|ref|YP_001012827.1| - 0.044 13.1 0.3 2.7 7.2 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase SO_alpha_A3 PF17806.1 gi|124027508|ref|YP_001012828.1| - 3.1e-18 65.9 0.0 1e-17 64.2 0.0 2.0 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Pyr_redox_2 PF07992.14 gi|124027508|ref|YP_001012828.1| - 1.6e-14 53.8 4.4 2.7e-14 53.1 4.4 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|124027508|ref|YP_001012828.1| - 1.3e-10 41.7 5.9 1e-05 26.0 0.2 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|124027508|ref|YP_001012828.1| - 4.7e-07 29.9 10.1 8.6e-05 22.7 2.8 3.9 3 1 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|124027508|ref|YP_001012828.1| - 6.5e-05 21.8 5.0 0.0013 17.5 2.4 2.3 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|124027508|ref|YP_001012828.1| - 8.7e-05 22.0 6.5 8.7e-05 22.0 6.5 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|124027508|ref|YP_001012828.1| - 0.00011 21.4 5.9 0.00011 21.4 5.9 2.0 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|124027508|ref|YP_001012828.1| - 0.00015 20.9 3.2 0.00015 20.9 3.2 2.1 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|124027508|ref|YP_001012828.1| - 0.00064 19.0 3.8 0.0047 16.2 1.3 2.2 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|124027508|ref|YP_001012828.1| - 0.0014 18.0 1.9 0.0014 18.0 1.9 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|124027508|ref|YP_001012828.1| - 0.0018 17.6 4.8 0.021 14.1 1.4 2.2 2 0 0 2 2 2 1 FAD binding domain Shikimate_DH PF01488.20 gi|124027508|ref|YP_001012828.1| - 0.0018 18.3 0.7 0.13 12.3 0.0 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|124027508|ref|YP_001012828.1| - 0.0021 18.0 1.9 0.0068 16.4 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|124027508|ref|YP_001012828.1| - 0.0039 17.1 5.2 0.67 9.8 0.8 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|124027508|ref|YP_001012828.1| - 0.0043 16.1 4.6 0.014 14.5 1.6 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Glu_dehyd_C PF16912.5 gi|124027508|ref|YP_001012828.1| - 0.0059 16.1 0.1 0.15 11.6 0.0 2.4 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus Pyr_redox_3 PF13738.6 gi|124027508|ref|YP_001012828.1| - 0.008 15.5 4.4 1.1 8.4 0.0 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|124027508|ref|YP_001012828.1| - 0.018 14.2 0.1 0.051 12.7 0.0 1.6 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|124027508|ref|YP_001012828.1| - 0.054 13.9 7.3 0.59 10.6 0.1 2.8 2 1 0 2 2 2 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|124027508|ref|YP_001012828.1| - 0.078 13.2 2.9 0.1 12.9 0.2 2.2 2 0 0 2 2 2 0 TrkA-N domain FMO-like PF00743.19 gi|124027508|ref|YP_001012828.1| - 0.11 10.9 0.2 0.6 8.5 0.1 1.8 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like DAO PF01266.24 gi|124027508|ref|YP_001012828.1| - 0.27 10.8 11.8 0.11 12.1 4.0 2.7 1 1 0 2 2 2 0 FAD dependent oxidoreductase KH_5 PF13184.6 gi|124027509|ref|YP_001012829.1| - 1.1e-12 47.9 0.0 1.9e-12 47.0 0.0 1.5 1 0 0 1 1 1 1 NusA-like KH domain RisS_PPD PF16524.5 gi|124027509|ref|YP_001012829.1| - 0.052 13.8 0.2 1.6 9.0 0.0 2.5 2 1 0 3 3 3 0 Periplasmic domain of Sensor histidine kinase RisS TruD PF01142.18 gi|124027510|ref|YP_001012830.1| - 1.1e-41 143.0 0.0 4.9e-41 140.9 0.0 1.8 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PIN PF01850.21 gi|124027511|ref|YP_001012831.1| - 4.6e-09 36.8 0.3 5.7e-09 36.5 0.3 1.1 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|124027511|ref|YP_001012831.1| - 0.0042 17.3 0.0 0.007 16.6 0.0 1.5 1 1 0 1 1 1 1 PIN domain PutA_N PF18083.1 gi|124027511|ref|YP_001012831.1| - 0.042 13.9 0.0 0.087 12.9 0.0 1.6 1 1 0 1 1 1 0 Proline utilization A N-terminal domain Radical_SAM PF04055.21 gi|124027512|ref|YP_001012832.1| - 2.2e-11 44.4 0.0 2.5e-10 41.0 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily OrfB_Zn_ribbon PF07282.11 gi|124027512|ref|YP_001012832.1| - 0.0058 16.5 2.2 0.0058 16.5 2.2 2.0 2 1 0 2 2 2 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|124027512|ref|YP_001012832.1| - 0.026 13.9 7.6 0.5 9.9 0.0 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|124027512|ref|YP_001012832.1| - 0.032 14.3 3.3 0.087 12.9 0.4 2.4 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|124027512|ref|YP_001012832.1| - 0.22 11.3 9.4 1.4 8.8 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|124027512|ref|YP_001012832.1| - 0.23 11.3 9.9 0.35 10.7 1.0 3.4 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger AcylCoA_dehyd_C PF12186.8 gi|124027512|ref|YP_001012832.1| - 0.24 11.5 0.0 0.37 10.9 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase C terminal Mu-like_Com PF10122.9 gi|124027512|ref|YP_001012832.1| - 1.2 8.6 5.6 6.6 6.3 0.2 2.5 2 0 0 2 2 2 0 Mu-like prophage protein Com RNA_POL_M_15KD PF02150.16 gi|124027512|ref|YP_001012832.1| - 5 7.1 10.0 1 9.3 4.4 2.5 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit PCMT PF01135.19 gi|124027514|ref|YP_001012834.1| - 2.2e-76 256.3 0.0 2.7e-76 256.0 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|124027514|ref|YP_001012834.1| - 1.1e-08 35.0 0.0 1.6e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|124027514|ref|YP_001012834.1| - 6.1e-06 26.1 0.0 8.7e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.6 gi|124027514|ref|YP_001012834.1| - 5.6e-05 24.1 0.0 9.5e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|124027514|ref|YP_001012834.1| - 6.2e-05 23.6 0.0 0.00012 22.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|124027514|ref|YP_001012834.1| - 6.2e-05 22.3 0.0 8.7e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.12 gi|124027514|ref|YP_001012834.1| - 0.001 19.7 0.0 0.0038 17.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain ACP_syn_III_C PF08541.10 gi|124027514|ref|YP_001012834.1| - 0.018 15.2 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF938 PF06080.12 gi|124027514|ref|YP_001012834.1| - 0.019 14.7 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) CMAS PF02353.20 gi|124027514|ref|YP_001012834.1| - 0.02 14.2 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|124027514|ref|YP_001012834.1| - 0.023 14.7 0.0 0.032 14.2 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|124027514|ref|YP_001012834.1| - 0.023 14.5 0.0 0.061 13.1 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|124027514|ref|YP_001012834.1| - 0.033 14.0 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein RrnaAD PF00398.20 gi|124027514|ref|YP_001012834.1| - 0.075 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Fibrillarin PF01269.17 gi|124027514|ref|YP_001012834.1| - 0.1 11.7 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_28 PF02636.17 gi|124027514|ref|YP_001012834.1| - 0.23 11.1 0.0 0.31 10.6 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase ATPase PF06745.13 gi|124027515|ref|YP_001012835.1| - 6e-38 130.5 0.0 4e-37 127.8 0.0 1.9 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.6 gi|124027515|ref|YP_001012835.1| - 7e-10 38.8 0.0 1.2e-08 34.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain GvpD PF07088.11 gi|124027515|ref|YP_001012835.1| - 2.4e-09 36.4 0.1 4.1e-07 29.0 0.0 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.15 gi|124027515|ref|YP_001012835.1| - 9.4e-07 28.4 0.0 1.8e-05 24.2 0.0 2.5 3 0 0 3 3 3 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|124027515|ref|YP_001012835.1| - 0.0019 18.6 0.0 0.092 13.1 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|124027515|ref|YP_001012835.1| - 0.0031 18.0 0.0 0.0068 16.8 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|124027515|ref|YP_001012835.1| - 0.011 15.7 0.0 0.052 13.5 0.0 2.0 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.17 gi|124027515|ref|YP_001012835.1| - 0.024 14.4 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|124027515|ref|YP_001012835.1| - 0.046 14.0 0.0 0.38 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|124027515|ref|YP_001012835.1| - 0.054 14.0 0.1 0.098 13.2 0.1 1.3 1 0 0 1 1 1 0 ABC transporter DUF302 PF03625.14 gi|124027515|ref|YP_001012835.1| - 0.07 13.0 0.7 0.6 10.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF302 DUF2075 PF09848.9 gi|124027515|ref|YP_001012835.1| - 0.071 12.3 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.25 gi|124027515|ref|YP_001012835.1| - 0.1 12.2 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.6 gi|124027515|ref|YP_001012835.1| - 0.11 12.3 0.0 1.2 8.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|124027515|ref|YP_001012835.1| - 0.13 11.2 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain Zeta_toxin PF06414.12 gi|124027515|ref|YP_001012835.1| - 0.13 11.5 0.0 0.27 10.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin PBP_like_2 PF12849.7 gi|124027516|ref|YP_001012836.1| - 1.4e-47 162.8 0.0 1.7e-47 162.4 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|124027516|ref|YP_001012836.1| - 3.4e-16 60.1 0.3 4.5e-16 59.7 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|124027516|ref|YP_001012836.1| - 4.7e-07 29.1 0.0 1.3e-06 27.7 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.22 gi|124027517|ref|YP_001012837.1| - 2.2e-08 34.1 11.2 2.2e-08 34.1 11.2 2.4 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component GTA_holin_3TM PF11351.8 gi|124027517|ref|YP_001012837.1| - 0.95 10.0 3.5 10 6.7 0.2 2.8 3 0 0 3 3 3 0 Holin of 3TMs, for gene-transfer release BPD_transp_1 PF00528.22 gi|124027518|ref|YP_001012838.1| - 1.6e-08 34.5 9.4 1.6e-08 34.5 9.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|124027519|ref|YP_001012839.1| - 7.9e-34 117.1 0.0 1e-33 116.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027519|ref|YP_001012839.1| - 2.7e-10 40.6 1.2 6.6e-05 22.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027519|ref|YP_001012839.1| - 2.8e-07 30.2 0.0 7.7e-07 28.8 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|124027519|ref|YP_001012839.1| - 1.5e-05 24.6 0.1 9.4e-05 22.1 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|124027519|ref|YP_001012839.1| - 3e-05 24.3 0.1 0.00031 21.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|124027519|ref|YP_001012839.1| - 0.00016 22.3 0.0 0.00025 21.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|124027519|ref|YP_001012839.1| - 0.00026 19.9 0.2 0.049 12.4 0.0 3.0 2 2 1 3 3 3 1 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|124027519|ref|YP_001012839.1| - 0.00031 20.6 0.1 0.023 14.4 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|124027519|ref|YP_001012839.1| - 0.00032 20.4 0.3 0.066 12.8 0.1 2.4 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|124027519|ref|YP_001012839.1| - 0.001 19.0 0.1 0.0031 17.4 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|124027519|ref|YP_001012839.1| - 0.0017 18.8 0.3 0.0031 17.9 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|124027519|ref|YP_001012839.1| - 0.002 17.9 0.0 0.0041 16.8 0.0 1.8 1 1 1 2 2 2 1 AAA domain TniB PF05621.11 gi|124027519|ref|YP_001012839.1| - 0.0042 16.5 0.0 0.22 10.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_27 PF13514.6 gi|124027519|ref|YP_001012839.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|124027519|ref|YP_001012839.1| - 0.014 15.3 0.2 0.032 14.1 0.1 1.7 2 0 0 2 2 2 0 NACHT domain FtsK_SpoIIIE PF01580.18 gi|124027519|ref|YP_001012839.1| - 0.017 14.5 0.1 0.062 12.6 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|124027519|ref|YP_001012839.1| - 0.018 14.8 0.1 0.041 13.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|124027519|ref|YP_001012839.1| - 0.022 13.9 0.0 0.031 13.5 0.0 1.3 1 1 0 1 1 1 0 NB-ARC domain cobW PF02492.19 gi|124027519|ref|YP_001012839.1| - 0.025 14.2 0.0 0.052 13.1 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Adeno_IVa2 PF02456.15 gi|124027519|ref|YP_001012839.1| - 0.028 13.2 0.0 0.043 12.6 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_18 PF13238.6 gi|124027519|ref|YP_001012839.1| - 0.036 14.6 0.1 0.14 12.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|124027519|ref|YP_001012839.1| - 0.039 13.7 0.0 0.085 12.6 0.0 1.6 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|124027519|ref|YP_001012839.1| - 0.044 13.9 0.3 0.097 12.8 0.3 1.9 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|124027519|ref|YP_001012839.1| - 0.048 13.6 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|124027519|ref|YP_001012839.1| - 0.049 13.9 0.0 0.63 10.3 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|124027519|ref|YP_001012839.1| - 0.088 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|124027519|ref|YP_001012839.1| - 0.11 12.8 0.1 0.57 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|124027519|ref|YP_001012839.1| - 0.29 10.2 0.0 0.44 9.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit MMPL PF03176.15 gi|124027520|ref|YP_001012840.1| - 3.8e-75 252.9 30.7 4.2e-38 131.1 13.0 2.9 3 0 0 3 3 3 2 MMPL family IncF PF17626.2 gi|124027520|ref|YP_001012840.1| - 0.076 13.4 1.4 0.57 10.6 0.4 3.1 2 0 0 2 2 2 0 Inclusion membrane protein F Fumarate_red_C PF02300.17 gi|124027520|ref|YP_001012840.1| - 0.1 12.7 0.5 0.38 10.8 0.5 2.0 1 0 0 1 1 1 0 Fumarate reductase subunit C HD_6 PF18019.1 gi|124027521|ref|YP_001012841.1| - 3.4e-10 40.4 0.8 5.5e-10 39.7 0.8 1.2 1 0 0 1 1 1 1 HD domain HD PF01966.22 gi|124027521|ref|YP_001012841.1| - 0.0014 18.8 0.4 0.0093 16.2 0.4 2.3 1 1 0 1 1 1 1 HD domain TMP_2 PF06791.13 gi|124027521|ref|YP_001012841.1| - 0.53 9.9 7.5 0.078 12.6 2.0 2.2 1 1 1 2 2 2 0 Prophage tail length tape measure protein GPP34 PF05719.11 gi|124027521|ref|YP_001012841.1| - 1.2 9.2 11.9 0.34 10.9 3.1 2.2 1 1 1 2 2 2 0 Golgi phosphoprotein 3 (GPP34) Helicase_C PF00271.31 gi|124027522|ref|YP_001012842.1| - 1.3e-09 38.4 0.1 2.8e-09 37.3 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|124027522|ref|YP_001012842.1| - 0.0093 15.8 0.0 2.3 8.0 0.0 2.6 3 0 0 3 3 3 2 DEAD/DEAH box helicase DEAD PF00270.29 gi|124027523|ref|YP_001012843.1| - 3.8e-06 26.8 0.0 4.4e-06 26.6 0.0 1.0 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|124027523|ref|YP_001012843.1| - 0.012 16.1 0.1 0.013 15.8 0.1 1.0 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|124027523|ref|YP_001012843.1| - 0.033 14.5 0.0 0.038 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|124027523|ref|YP_001012843.1| - 0.1 12.6 0.0 0.11 12.5 0.0 1.0 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Cas_Cas5d PF09704.10 gi|124027525|ref|YP_001012845.1| - 2e-24 86.7 0.0 2.5e-24 86.4 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.16 gi|124027526|ref|YP_001012846.1| - 5.8e-86 287.9 0.0 6.9e-86 287.6 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Csa5 PF09702.10 gi|124027527|ref|YP_001012847.1| - 3e-07 30.7 0.2 5e-06 26.7 0.1 2.2 1 1 1 2 2 2 1 CRISPR-associated protein (Cas_Csa5) DUF3636 PF12331.8 gi|124027527|ref|YP_001012847.1| - 0.0072 16.2 0.0 0.0094 15.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3636) BTAD PF03704.17 gi|124027527|ref|YP_001012847.1| - 0.016 15.6 0.5 0.02 15.3 0.5 1.1 1 0 0 1 1 1 0 Bacterial transcriptional activator domain HTH_IclR PF09339.10 gi|124027528|ref|YP_001012848.1| - 3.4e-08 33.1 1.6 1.2e-07 31.3 0.1 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|124027528|ref|YP_001012848.1| - 7.4e-07 29.0 0.1 2.1e-06 27.5 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|124027528|ref|YP_001012848.1| - 1.3e-05 25.3 0.1 0.00012 22.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|124027528|ref|YP_001012848.1| - 0.00039 20.4 0.2 0.0013 18.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|124027528|ref|YP_001012848.1| - 0.00065 19.2 0.0 0.0015 18.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|124027528|ref|YP_001012848.1| - 0.0017 18.1 0.4 0.0084 15.9 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 gi|124027528|ref|YP_001012848.1| - 0.0032 17.5 0.0 0.023 14.8 0.0 2.4 1 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|124027528|ref|YP_001012848.1| - 0.007 16.2 0.5 0.049 13.5 0.1 2.5 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|124027528|ref|YP_001012848.1| - 0.019 15.5 0.0 0.033 14.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|124027528|ref|YP_001012848.1| - 0.058 13.7 0.0 15 6.0 0.0 2.9 3 0 0 3 3 3 0 Transcriptional regulator LZ_Tnp_IS481 PF13011.6 gi|124027528|ref|YP_001012848.1| - 0.088 13.3 0.3 0.36 11.4 0.0 2.1 3 0 0 3 3 3 0 leucine-zipper of insertion element IS481 HTH_5 PF01022.20 gi|124027528|ref|YP_001012848.1| - 0.11 12.3 0.3 0.54 10.2 0.1 2.2 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family Mga PF05043.13 gi|124027528|ref|YP_001012848.1| - 0.13 12.9 0.0 0.26 11.9 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain Cas_Cas4 PF01930.17 gi|124027531|ref|YP_001012851.1| - 9.9e-11 42.0 0.0 1.4e-10 41.5 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|124027531|ref|YP_001012851.1| - 2.2e-09 37.6 0.0 2.6e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3799 PF12684.7 gi|124027531|ref|YP_001012851.1| - 0.0095 15.7 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 1 PDDEXK-like domain of unknown function (DUF3799) Csa1 PF06023.12 gi|124027531|ref|YP_001012851.1| - 0.068 12.5 0.0 0.083 12.2 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated exonuclease Csa1 CRISPR_Cas2 PF09827.9 gi|124027532|ref|YP_001012852.1| - 2.3e-16 59.7 0.0 2.9e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Csa1 PF06023.12 gi|124027533|ref|YP_001012853.1| - 1.2e-55 189.0 0.0 6.2e-38 130.8 0.0 2.0 1 1 1 2 2 2 2 CRISPR-associated exonuclease Csa1 PDDEXK_1 PF12705.7 gi|124027533|ref|YP_001012853.1| - 5.9e-05 23.1 0.0 0.12 12.3 0.1 2.1 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|124027533|ref|YP_001012853.1| - 0.00094 19.3 0.0 0.0071 16.5 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF83 Cas_Cas1 PF01867.16 gi|124027534|ref|YP_001012854.1| - 4.1e-51 173.8 0.0 5.2e-51 173.5 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF87 PF01935.17 gi|124027535|ref|YP_001012855.1| - 4.8e-09 36.6 0.1 2.1e-08 34.5 0.1 1.9 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|124027535|ref|YP_001012855.1| - 7.6e-07 28.1 0.0 0.02 13.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 gi|124027535|ref|YP_001012855.1| - 1.6e-06 28.4 0.1 0.11 12.8 0.0 3.0 2 1 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.9 gi|124027535|ref|YP_001012855.1| - 4.1e-06 26.0 0.2 2.7e-05 23.3 0.0 2.3 4 0 0 4 4 4 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|124027535|ref|YP_001012855.1| - 4.8e-05 22.8 0.5 0.00052 19.4 0.1 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|124027535|ref|YP_001012855.1| - 0.00017 22.0 1.6 0.057 13.8 1.6 2.9 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|124027535|ref|YP_001012855.1| - 0.00093 19.6 0.0 1.5 9.3 0.1 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zot PF05707.12 gi|124027535|ref|YP_001012855.1| - 0.00097 18.8 0.0 0.04 13.6 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) T2SSE PF00437.20 gi|124027535|ref|YP_001012855.1| - 0.007 15.5 0.2 0.013 14.6 0.2 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.29 gi|124027535|ref|YP_001012855.1| - 0.012 15.4 0.0 2.1 8.0 0.1 2.4 2 1 0 2 2 2 0 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|124027535|ref|YP_001012855.1| - 0.014 14.7 0.1 0.78 8.9 0.2 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|124027535|ref|YP_001012855.1| - 0.015 14.8 0.1 0.027 14.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_10 PF12846.7 gi|124027535|ref|YP_001012855.1| - 0.031 13.2 0.2 2.6 6.9 0.1 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_18 PF13238.6 gi|124027535|ref|YP_001012855.1| - 0.032 14.8 0.1 0.091 13.3 0.1 1.8 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|124027535|ref|YP_001012855.1| - 0.037 14.0 0.1 0.075 12.9 0.1 1.5 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|124027535|ref|YP_001012855.1| - 0.04 13.5 0.1 0.073 12.7 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|124027535|ref|YP_001012855.1| - 0.042 14.2 0.1 0.45 10.8 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|124027535|ref|YP_001012855.1| - 0.05 13.3 0.1 0.099 12.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|124027535|ref|YP_001012855.1| - 0.075 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF815 PF05673.13 gi|124027535|ref|YP_001012855.1| - 0.076 12.2 0.1 0.13 11.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Glycos_transf_3 PF00591.21 gi|124027535|ref|YP_001012855.1| - 0.099 12.2 0.2 0.33 10.5 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family, a/b domain ResIII PF04851.15 gi|124027535|ref|YP_001012855.1| - 0.11 12.4 0.1 1.6 8.7 0.1 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.15 gi|124027535|ref|YP_001012855.1| - 0.14 12.1 0.1 0.28 11.1 0.1 1.5 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.6 gi|124027535|ref|YP_001012855.1| - 0.15 11.8 1.2 4.6 6.9 0.2 2.9 2 1 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|124027535|ref|YP_001012855.1| - 0.16 11.6 0.0 0.41 10.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_23 PF13476.6 gi|124027535|ref|YP_001012855.1| - 0.27 11.7 0.1 0.49 10.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain NurA PF09376.10 gi|124027537|ref|YP_001012857.1| - 3.3e-07 30.3 0.0 4.7e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 NurA domain DUF5626 PF18540.1 gi|124027537|ref|YP_001012857.1| - 0.19 12.3 0.0 0.3 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5626) PAPS_reduct PF01507.19 gi|124027539|ref|YP_001012859.1| - 5.3e-37 127.5 0.0 7.9e-37 127.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|124027539|ref|YP_001012859.1| - 0.00033 19.9 0.0 0.00051 19.2 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Fer4_10 PF13237.6 gi|124027539|ref|YP_001012859.1| - 0.00056 20.0 13.7 0.041 14.0 15.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|124027539|ref|YP_001012859.1| - 0.00062 20.3 16.3 0.0046 17.5 16.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|124027539|ref|YP_001012859.1| - 0.00096 19.3 25.9 0.0041 17.2 15.0 3.0 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|124027539|ref|YP_001012859.1| - 0.0011 18.7 4.6 0.0011 18.7 4.6 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain tRNA_Me_trans PF03054.16 gi|124027539|ref|YP_001012859.1| - 0.0022 16.9 0.0 0.0055 15.5 0.0 1.7 1 1 0 1 1 1 1 tRNA methyl transferase Fer4_16 PF13484.6 gi|124027539|ref|YP_001012859.1| - 0.0055 17.6 18.6 0.026 15.4 5.5 3.3 2 1 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|124027539|ref|YP_001012859.1| - 0.0065 16.5 4.1 0.0065 16.5 4.1 3.4 4 0 0 4 4 2 2 4Fe-4S binding domain ThiI PF02568.14 gi|124027539|ref|YP_001012859.1| - 0.033 13.8 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Fer4_21 PF14697.6 gi|124027539|ref|YP_001012859.1| - 0.035 14.2 17.7 0.086 13.0 3.0 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|124027539|ref|YP_001012859.1| - 0.036 14.9 6.0 1.3 9.9 0.7 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Asn_synthase PF00733.21 gi|124027539|ref|YP_001012859.1| - 0.056 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.13 gi|124027539|ref|YP_001012859.1| - 0.15 11.6 0.0 0.15 11.6 0.0 1.9 2 0 0 2 2 1 0 Queuosine biosynthesis protein QueC Fer4_18 PF13746.6 gi|124027539|ref|YP_001012859.1| - 0.48 10.6 12.7 0.8 9.9 0.9 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|124027539|ref|YP_001012859.1| - 1.4 9.4 18.6 1.2 9.7 3.2 3.1 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|124027539|ref|YP_001012859.1| - 2.6 8.6 19.0 0.83 10.2 2.2 3.0 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124027539|ref|YP_001012859.1| - 9.3 6.5 27.8 0.095 12.8 4.3 3.3 4 0 0 4 4 2 0 4Fe-4S binding domain RHH_1 PF01402.21 gi|124027540|ref|YP_001012860.1| - 3.5e-10 39.4 0.2 4.5e-10 39.1 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|124027540|ref|YP_001012860.1| - 2.7e-08 33.6 0.6 3.8e-08 33.2 0.6 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain VapB_antitoxin PF09957.9 gi|124027540|ref|YP_001012860.1| - 0.012 15.5 1.2 0.015 15.2 1.2 1.3 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB PSK_trans_fac PF07704.11 gi|124027540|ref|YP_001012860.1| - 0.021 15.6 0.0 0.023 15.4 0.0 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor CopG_antitoxin PF12441.8 gi|124027540|ref|YP_001012860.1| - 0.057 14.0 0.0 0.078 13.5 0.0 1.2 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system RHH_5 PF07878.11 gi|124027540|ref|YP_001012860.1| - 0.12 12.3 0.1 0.14 12.0 0.1 1.1 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_5 PF07878.11 gi|124027541|ref|YP_001012861.1| - 6.2e-07 29.2 0.0 1.3e-06 28.2 0.0 1.6 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Trimer_CC PF08954.11 gi|124027541|ref|YP_001012861.1| - 0.00012 21.5 0.2 0.00012 21.5 0.2 2.1 2 1 0 2 2 2 1 Trimerisation motif CopG_antitoxin PF12441.8 gi|124027541|ref|YP_001012861.1| - 0.00017 22.1 0.4 0.00037 21.0 0.0 1.8 2 0 0 2 2 1 1 CopG antitoxin of type II toxin-antitoxin system DUF1664 PF07889.12 gi|124027541|ref|YP_001012861.1| - 0.0051 16.9 3.3 0.0069 16.4 3.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) TolA_bind_tri PF16331.5 gi|124027541|ref|YP_001012861.1| - 0.0074 16.3 10.5 0.043 13.9 10.4 2.0 1 1 0 1 1 1 1 TolA binding protein trimerisation DUF16 PF01519.16 gi|124027541|ref|YP_001012861.1| - 0.0081 16.6 5.9 0.012 16.1 0.2 2.2 1 1 1 2 2 2 1 Protein of unknown function DUF16 DUF4795 PF16043.5 gi|124027541|ref|YP_001012861.1| - 0.011 15.4 6.3 0.014 15.0 6.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) DUF2046 PF09755.9 gi|124027541|ref|YP_001012861.1| - 0.011 14.9 10.8 0.012 14.9 10.8 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein H4 (DUF2046) AAA_32 PF13654.6 gi|124027541|ref|YP_001012861.1| - 0.015 14.1 4.3 0.018 13.9 4.3 1.2 1 0 0 1 1 1 0 AAA domain Prominin PF05478.11 gi|124027541|ref|YP_001012861.1| - 0.016 13.2 1.6 0.019 12.9 1.6 1.1 1 0 0 1 1 1 0 Prominin DUF4618 PF15397.6 gi|124027541|ref|YP_001012861.1| - 0.021 14.3 8.1 0.04 13.3 8.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) Lectin_N PF03954.14 gi|124027541|ref|YP_001012861.1| - 0.026 14.2 0.4 0.056 13.2 0.2 1.6 1 1 0 2 2 2 0 Hepatic lectin, N-terminal domain Baculo_PEP_C PF04513.12 gi|124027541|ref|YP_001012861.1| - 0.029 14.4 0.5 0.082 13.0 0.4 1.7 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF745 PF05335.13 gi|124027541|ref|YP_001012861.1| - 0.036 13.8 1.5 0.04 13.6 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) Zw10 PF06248.13 gi|124027541|ref|YP_001012861.1| - 0.036 12.6 5.2 0.14 10.7 4.9 1.7 1 1 0 1 1 1 0 Centromere/kinetochore Zw10 Spc7 PF08317.11 gi|124027541|ref|YP_001012861.1| - 0.037 12.9 8.3 0.054 12.4 8.2 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF724 PF05266.14 gi|124027541|ref|YP_001012861.1| - 0.059 13.2 3.8 0.07 13.0 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) RHH_4 PF13467.6 gi|124027541|ref|YP_001012861.1| - 0.063 13.2 0.1 0.17 11.8 0.1 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix domain DUF1845 PF08900.11 gi|124027541|ref|YP_001012861.1| - 0.068 12.9 0.5 0.14 11.8 0.2 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF1845) Metal_resist PF13801.6 gi|124027541|ref|YP_001012861.1| - 0.095 12.9 2.8 0.12 12.5 2.8 1.2 1 0 0 1 1 1 0 Heavy-metal resistance DUF948 PF06103.11 gi|124027541|ref|YP_001012861.1| - 0.11 12.8 1.7 1 9.7 1.5 2.3 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) NYD-SP28 PF14772.6 gi|124027541|ref|YP_001012861.1| - 0.21 11.6 9.1 0.26 11.3 8.8 1.3 1 1 0 1 1 1 0 Sperm tail ACCA PF03255.14 gi|124027541|ref|YP_001012861.1| - 0.23 11.3 4.3 0.21 11.4 0.3 2.0 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1908 PF08926.11 gi|124027541|ref|YP_001012861.1| - 0.25 10.4 3.7 0.28 10.2 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1908) Exonuc_VII_L PF02601.15 gi|124027541|ref|YP_001012861.1| - 0.32 10.5 3.1 0.37 10.3 3.1 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit Fib_alpha PF08702.10 gi|124027541|ref|YP_001012861.1| - 0.41 10.8 5.0 0.88 9.8 5.0 1.7 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family RNA_pol_Rpb2_1 PF04563.15 gi|124027541|ref|YP_001012861.1| - 0.53 9.8 2.7 0.76 9.3 1.4 1.8 2 0 0 2 2 2 0 RNA polymerase beta subunit Ead_Ea22 PF13935.6 gi|124027541|ref|YP_001012861.1| - 0.59 10.8 5.4 1.2 9.8 5.4 1.7 1 1 0 1 1 1 0 Ead/Ea22-like protein FapA PF03961.13 gi|124027541|ref|YP_001012861.1| - 0.76 8.3 6.9 1 7.9 6.9 1.2 1 1 0 1 1 1 0 Flagellar Assembly Protein A S6OS1 PF15676.5 gi|124027541|ref|YP_001012861.1| - 1 7.8 7.5 1.4 7.4 7.5 1.2 1 1 0 1 1 1 0 Six6 opposite strand transcript 1 family SlyX PF04102.12 gi|124027541|ref|YP_001012861.1| - 1.2 9.9 7.9 0.52 11.0 0.9 2.7 1 1 1 2 2 2 0 SlyX DUF1003 PF06210.11 gi|124027541|ref|YP_001012861.1| - 4.9 7.3 6.1 4.5 7.4 4.7 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1003) Lactamase_B_2 PF12706.7 gi|124027542|ref|YP_001012862.1| - 1.6e-22 80.0 0.0 1e-10 41.5 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|124027542|ref|YP_001012862.1| - 1e-14 55.0 0.3 2.5e-13 50.5 0.3 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|124027542|ref|YP_001012862.1| - 0.0042 16.7 0.0 0.013 15.1 0.0 1.8 2 0 0 2 2 2 1 tRNase Z endonuclease Pribosyltran PF00156.27 gi|124027543|ref|YP_001012863.1| - 1.7e-19 69.9 1.1 2.5e-19 69.3 1.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|124027543|ref|YP_001012863.1| - 2.8e-11 43.8 2.4 2.4e-10 40.7 1.5 2.1 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|124027543|ref|YP_001012863.1| - 0.0016 17.9 0.1 0.0022 17.4 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|124027543|ref|YP_001012863.1| - 0.005 16.4 0.0 0.042 13.4 0.0 2.0 1 1 1 2 2 2 1 Phosphoribosyl transferase Peripla_BP_1 PF00532.21 gi|124027543|ref|YP_001012863.1| - 0.11 11.8 0.2 0.17 11.3 0.2 1.2 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family PNP_UDP_1 PF01048.20 gi|124027544|ref|YP_001012864.1| - 3.1e-14 52.8 0.0 3.7e-14 52.6 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PIN PF01850.21 gi|124027546|ref|YP_001012866.1| - 1.1e-12 48.5 1.4 1.4e-12 48.2 1.4 1.0 1 0 0 1 1 1 1 PIN domain Apo-CII PF05355.11 gi|124027546|ref|YP_001012866.1| - 0.024 14.8 0.1 0.041 14.0 0.1 1.4 1 0 0 1 1 1 0 Apolipoprotein C-II SIS PF01380.22 gi|124027547|ref|YP_001012867.1| - 5.3e-05 23.1 0.4 0.00049 19.9 0.1 2.7 2 1 1 3 3 3 1 SIS domain SIS_2 PF13580.6 gi|124027547|ref|YP_001012867.1| - 0.00035 20.6 0.3 0.0025 17.8 0.0 2.2 1 1 1 2 2 2 1 SIS domain POR PF01558.18 gi|124027548|ref|YP_001012868.1| - 3.7e-39 134.6 0.0 4.5e-39 134.3 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|124027549|ref|YP_001012869.1| - 7.2e-16 57.3 15.6 6.9e-08 32.0 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|124027549|ref|YP_001012869.1| - 4.6e-12 46.3 31.0 4.4e-07 30.4 12.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124027549|ref|YP_001012869.1| - 1.1e-11 44.6 6.5 1.7e-11 44.0 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124027549|ref|YP_001012869.1| - 5.6e-11 42.0 13.0 2.8e-05 24.0 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|124027549|ref|YP_001012869.1| - 8.3e-09 36.3 8.2 0.0011 19.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|124027549|ref|YP_001012869.1| - 1.4e-08 34.7 8.9 2.9e-08 33.7 9.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|124027549|ref|YP_001012869.1| - 4.6e-08 33.1 17.8 7.6e-07 29.2 8.6 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124027549|ref|YP_001012869.1| - 8.7e-08 31.8 13.0 0.0011 18.9 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|124027549|ref|YP_001012869.1| - 3.7e-06 27.3 7.1 5.9e-06 26.6 7.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124027549|ref|YP_001012869.1| - 0.00015 22.0 12.7 0.012 16.1 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|124027549|ref|YP_001012869.1| - 0.00022 21.7 9.2 0.0096 16.4 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|124027549|ref|YP_001012869.1| - 0.0008 20.1 10.4 0.097 13.4 0.5 2.9 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|124027549|ref|YP_001012869.1| - 0.00083 19.9 10.8 0.039 14.5 11.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|124027549|ref|YP_001012869.1| - 0.017 16.0 9.7 0.12 13.2 1.8 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|124027549|ref|YP_001012869.1| - 0.48 10.6 6.2 3.5 7.8 0.9 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|124027549|ref|YP_001012869.1| - 8.3 7.6 16.6 3.9 8.6 5.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 gi|124027550|ref|YP_001012870.1| - 7.2e-69 232.1 1.9 9.9e-69 231.6 1.9 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|124027550|ref|YP_001012870.1| - 1.1e-27 96.3 2.3 2.6e-27 95.1 2.3 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|124027550|ref|YP_001012870.1| - 3.5e-06 26.9 2.7 4.3e-06 26.6 0.3 2.2 2 0 0 2 2 2 1 Transketolase, C-terminal domain ZnuA PF01297.17 gi|124027550|ref|YP_001012870.1| - 9.3e-05 22.0 1.2 0.0067 15.9 0.2 2.2 2 0 0 2 2 2 2 Zinc-uptake complex component A periplasmic TPP_enzyme_C PF02775.21 gi|124027551|ref|YP_001012871.1| - 4.5e-27 94.7 0.0 6.8e-27 94.1 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PBC PF03792.13 gi|124027551|ref|YP_001012871.1| - 0.0055 16.5 0.0 0.0085 15.9 0.0 1.2 1 0 0 1 1 1 1 PBC domain Trm5_N PF18093.1 gi|124027551|ref|YP_001012871.1| - 0.13 12.1 0.1 0.87 9.5 0.0 2.1 2 0 0 2 2 2 0 tRNA methyltransferase 5 N-terminal domain LexA_DNA_bind PF01726.16 gi|124027551|ref|YP_001012871.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain DUF104 PF01954.16 gi|124027552|ref|YP_001012872.1| - 9.6e-22 77.2 4.4 1.1e-21 77.0 4.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|124027553|ref|YP_001012873.1| - 2.8e-06 27.8 0.1 3.3e-06 27.6 0.1 1.1 1 0 0 1 1 1 1 PIN domain Frankia_peptide PF14407.6 gi|124027553|ref|YP_001012873.1| - 0.047 13.7 0.1 0.081 12.9 0.1 1.4 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. NPV_P10 PF05531.12 gi|124027553|ref|YP_001012873.1| - 0.15 12.5 0.1 0.38 11.2 0.1 1.6 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein MazE_antitoxin PF04014.18 gi|124027554|ref|YP_001012874.1| - 4.3e-09 36.1 0.5 6.1e-09 35.6 0.5 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|124027554|ref|YP_001012874.1| - 0.0057 16.6 0.0 0.0072 16.3 0.0 1.5 1 1 0 1 1 1 1 MraZ protein, putative antitoxin-like Poly_export PF02563.16 gi|124027554|ref|YP_001012874.1| - 0.018 15.2 0.0 0.6 10.4 0.0 2.2 1 1 1 2 2 2 0 Polysaccharide biosynthesis/export protein PrlF_antitoxin PF15937.5 gi|124027554|ref|YP_001012874.1| - 0.1 13.0 0.0 0.16 12.4 0.0 1.4 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|124027555|ref|YP_001012875.1| - 5.4e-09 36.6 0.5 7.3e-09 36.2 0.5 1.2 1 0 0 1 1 1 1 PIN domain Peptidase_M1 PF01433.20 gi|124027556|ref|YP_001012876.1| - 0.0022 17.6 0.0 0.0028 17.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M1 domain PaREP1 PF05942.11 gi|124027557|ref|YP_001012877.1| - 1.4e-28 99.1 5.2 1.9e-28 98.7 5.2 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|124027557|ref|YP_001012877.1| - 0.00093 19.4 0.0 0.0013 18.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5618) HEPN PF05168.14 gi|124027557|ref|YP_001012877.1| - 0.0024 18.0 4.4 0.03 14.4 4.4 2.1 1 1 0 1 1 1 1 HEPN domain RHH_1 PF01402.21 gi|124027557|ref|YP_001012877.1| - 0.017 15.1 1.1 0.017 15.1 1.1 3.1 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DUF3445 PF11927.8 gi|124027557|ref|YP_001012877.1| - 0.047 13.3 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3445) SNARE PF05739.19 gi|124027557|ref|YP_001012877.1| - 0.72 9.9 4.0 4.4 7.4 0.1 2.9 3 1 0 3 3 3 0 SNARE domain HisKA PF00512.25 gi|124027557|ref|YP_001012877.1| - 1.6 8.8 4.4 15 5.7 0.2 3.0 2 1 1 3 3 3 0 His Kinase A (phospho-acceptor) domain DUF4708 PF15813.5 gi|124027558|ref|YP_001012878.1| - 0.16 11.1 0.0 0.23 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4708) DUF108 PF01958.18 gi|124027559|ref|YP_001012879.1| - 2.6e-31 107.8 1.7 4.1e-31 107.2 1.7 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|124027559|ref|YP_001012879.1| - 6.2e-17 62.3 0.9 1.1e-16 61.5 0.2 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain QRPTase_C PF01729.19 gi|124027560|ref|YP_001012880.1| - 3.2e-57 193.0 1.3 4e-57 192.7 1.3 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|124027560|ref|YP_001012880.1| - 2.9e-17 62.5 0.0 1e-16 60.7 0.0 1.9 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain CCDC73 PF15818.5 gi|124027560|ref|YP_001012880.1| - 0.037 11.9 0.0 0.048 11.5 0.0 1.0 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 73 family Ret2_MD PF18528.1 gi|124027560|ref|YP_001012880.1| - 0.1 13.0 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA editing 3' terminal uridylyl transferase 2 middle domain NadA PF02445.16 gi|124027561|ref|YP_001012881.1| - 1.5e-94 316.6 0.0 1.7e-94 316.4 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sigma70_r4_2 PF08281.12 gi|124027561|ref|YP_001012881.1| - 0.053 13.2 0.2 0.17 11.6 0.2 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 Sua5_yciO_yrdC PF01300.18 gi|124027561|ref|YP_001012881.1| - 0.11 11.9 0.0 0.38 10.2 0.0 1.8 2 0 0 2 2 2 0 Telomere recombination ADP_ribosyl_GH PF03747.14 gi|124027562|ref|YP_001012882.1| - 3.5e-39 135.3 3.7 3.9e-39 135.1 3.7 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase SHOCT PF09851.9 gi|124027563|ref|YP_001012883.1| - 6.5e-09 35.3 8.2 7.2e-09 35.1 5.7 2.2 2 0 0 2 2 2 1 Short C-terminal domain E1_dh PF00676.20 gi|124027563|ref|YP_001012883.1| - 0.0062 15.5 0.8 0.0073 15.3 0.8 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component GvpG PF05120.12 gi|124027563|ref|YP_001012883.1| - 0.026 14.5 5.9 0.049 13.6 5.9 1.6 1 1 0 1 1 1 0 Gas vesicle protein G DMAP_binding PF06464.11 gi|124027563|ref|YP_001012883.1| - 0.048 14.5 3.2 0.048 14.5 3.2 1.9 1 1 1 2 2 2 0 DMAP1-binding Domain bPH_3 PF14470.6 gi|124027564|ref|YP_001012884.1| - 1.6e-21 76.5 0.1 1.8e-21 76.3 0.1 1.0 1 0 0 1 1 1 1 Bacterial PH domain bPH_1 PF08000.11 gi|124027564|ref|YP_001012884.1| - 0.00096 19.2 0.1 0.0013 18.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF2835 PF11197.8 gi|124027564|ref|YP_001012884.1| - 0.038 13.8 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2835) MR_MLE_C PF13378.6 gi|124027565|ref|YP_001012885.1| - 1.2e-42 145.9 1.5 1.8e-42 145.4 1.5 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|124027565|ref|YP_001012885.1| - 4e-09 36.7 0.6 2.8e-08 34.0 0.0 2.4 2 2 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ThiG PF05690.14 gi|124027565|ref|YP_001012885.1| - 0.0026 17.1 1.8 0.0041 16.5 1.8 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG MAAL_C PF07476.11 gi|124027565|ref|YP_001012885.1| - 0.005 16.0 0.1 0.0078 15.4 0.1 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus SBP_bac_3 PF00497.20 gi|124027566|ref|YP_001012886.1| - 6.3e-74 248.2 1.0 7.2e-74 248.0 1.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|124027566|ref|YP_001012886.1| - 2.2e-08 34.0 0.2 4.5e-08 33.0 0.2 1.5 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Lig_chan-Glu_bd PF10613.9 gi|124027566|ref|YP_001012886.1| - 3.5e-08 33.6 0.1 1.5e-07 31.6 0.1 2.1 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|124027566|ref|YP_001012886.1| - 8.9e-08 32.3 1.3 0.00059 19.8 0.2 2.3 1 1 1 2 2 2 2 NMT1/THI5 like OpuAC PF04069.12 gi|124027566|ref|YP_001012886.1| - 1e-06 28.5 1.1 0.0011 18.6 0.5 2.1 2 0 0 2 2 2 2 Substrate binding domain of ABC-type glycine betaine transport system Lipoprotein_9 PF03180.14 gi|124027566|ref|YP_001012886.1| - 7.4e-05 22.0 1.2 0.00012 21.3 0.2 1.8 2 0 0 2 2 2 1 NLPA lipoprotein PTS_IIB PF02302.17 gi|124027566|ref|YP_001012886.1| - 0.03 15.0 1.5 0.25 12.1 0.3 2.3 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit NMT1_2 PF13379.6 gi|124027566|ref|YP_001012886.1| - 0.032 13.9 0.1 0.087 12.5 0.0 1.8 2 0 0 2 2 2 0 NMT1-like family DUSP PF06337.12 gi|124027566|ref|YP_001012886.1| - 0.13 12.9 0.1 5.2 7.8 0.0 2.4 1 1 1 2 2 2 0 DUSP domain DUF347 PF03988.12 gi|124027566|ref|YP_001012886.1| - 0.17 12.1 2.0 6.2 7.1 0.0 2.3 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) BPD_transp_1 PF00528.22 gi|124027567|ref|YP_001012887.1| - 2.3e-15 56.8 16.8 2.3e-15 56.8 16.8 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component CPP1-like PF11833.8 gi|124027567|ref|YP_001012887.1| - 8.9 5.9 6.4 0.68 9.5 0.8 1.9 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like ABC_tran PF00005.27 gi|124027568|ref|YP_001012888.1| - 2.2e-35 122.2 0.0 3e-35 121.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027568|ref|YP_001012888.1| - 1.5e-14 54.6 0.0 9.2e-07 29.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027568|ref|YP_001012888.1| - 7.8e-10 38.6 0.1 2.6e-05 23.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|124027568|ref|YP_001012888.1| - 6.8e-06 25.7 0.0 1.2e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|124027568|ref|YP_001012888.1| - 0.00015 20.7 0.2 0.14 10.9 0.0 2.4 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|124027568|ref|YP_001012888.1| - 0.00018 22.1 0.0 0.00026 21.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|124027568|ref|YP_001012888.1| - 0.00059 20.3 0.0 0.0012 19.2 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|124027568|ref|YP_001012888.1| - 0.0022 17.8 0.0 0.033 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|124027568|ref|YP_001012888.1| - 0.0025 17.8 0.0 0.0044 16.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|124027568|ref|YP_001012888.1| - 0.0035 17.6 0.0 0.016 15.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|124027568|ref|YP_001012888.1| - 0.0062 16.3 0.0 0.01 15.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|124027568|ref|YP_001012888.1| - 0.012 14.3 0.0 0.32 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|124027568|ref|YP_001012888.1| - 0.014 15.1 0.1 0.68 9.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|124027568|ref|YP_001012888.1| - 0.021 15.0 0.0 0.23 11.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|124027568|ref|YP_001012888.1| - 0.03 14.8 0.1 5.8 7.3 0.1 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|124027568|ref|YP_001012888.1| - 0.043 13.7 0.0 0.18 11.7 0.0 1.9 2 0 0 2 2 2 0 NACHT domain ATPase_2 PF01637.18 gi|124027568|ref|YP_001012888.1| - 0.057 13.3 0.1 0.24 11.3 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|124027568|ref|YP_001012888.1| - 0.072 12.7 0.0 0.33 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|124027568|ref|YP_001012888.1| - 0.096 12.7 0.2 3.1 7.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_27 PF13514.6 gi|124027568|ref|YP_001012888.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|124027568|ref|YP_001012888.1| - 0.11 12.7 0.0 1.6 9.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|124027568|ref|YP_001012888.1| - 0.11 12.7 0.0 0.36 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|124027568|ref|YP_001012888.1| - 0.17 10.6 0.1 0.32 9.7 0.1 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_24 PF13479.6 gi|124027568|ref|YP_001012888.1| - 0.21 11.3 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|124027569|ref|YP_001012889.1| - 1.2e-18 67.5 15.0 1.5e-18 67.2 15.0 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component HEAT_PBS PF03130.16 gi|124027569|ref|YP_001012889.1| - 0.22 12.3 2.1 1.7 9.6 1.0 3.1 2 1 0 2 2 2 0 PBS lyase HEAT-like repeat Cob_adeno_trans PF01923.18 gi|124027570|ref|YP_001012890.1| - 1.3e-07 31.9 0.0 2.6e-07 30.9 0.0 1.5 1 1 0 1 1 1 1 Cobalamin adenosyltransferase HTH_24 PF13412.6 gi|124027572|ref|YP_001012892.1| - 3.6e-09 36.0 0.1 4.8e-09 35.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|124027572|ref|YP_001012892.1| - 1.4e-07 31.2 0.6 1.9e-07 30.8 0.6 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|124027572|ref|YP_001012892.1| - 1.4e-07 31.2 0.1 1.9e-07 30.8 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|124027572|ref|YP_001012892.1| - 1.4e-06 28.1 0.4 2e-06 27.6 0.4 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|124027572|ref|YP_001012892.1| - 5e-06 26.3 0.0 6.8e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|124027572|ref|YP_001012892.1| - 2.2e-05 24.6 0.0 3.1e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|124027572|ref|YP_001012892.1| - 4.1e-05 23.4 0.1 6.2e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|124027572|ref|YP_001012892.1| - 5.8e-05 22.9 0.0 7.6e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|124027572|ref|YP_001012892.1| - 0.0001 22.1 0.1 0.00015 21.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|124027572|ref|YP_001012892.1| - 0.00019 21.1 0.1 0.00026 20.7 0.1 1.1 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|124027572|ref|YP_001012892.1| - 0.0011 19.0 0.2 0.0015 18.5 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|124027572|ref|YP_001012892.1| - 0.0012 19.3 0.2 0.0016 18.9 0.2 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|124027572|ref|YP_001012892.1| - 0.0022 17.9 0.2 0.0048 16.8 0.2 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HxlR PF01638.17 gi|124027572|ref|YP_001012892.1| - 0.0078 16.0 0.1 0.0092 15.8 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_CodY PF08222.11 gi|124027572|ref|YP_001012892.1| - 0.0081 15.7 0.4 0.014 15.0 0.4 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain Rrf2 PF02082.20 gi|124027572|ref|YP_001012892.1| - 0.013 15.9 0.4 0.052 13.9 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_Tnp_ISL3 PF13542.6 gi|124027572|ref|YP_001012892.1| - 0.018 14.4 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF2250 PF10007.9 gi|124027572|ref|YP_001012892.1| - 0.021 14.9 0.0 0.027 14.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DprA_WH PF17782.1 gi|124027572|ref|YP_001012892.1| - 0.035 14.2 0.3 0.043 13.9 0.3 1.2 1 0 0 1 1 1 0 DprA winged helix domain Replic_Relax PF13814.6 gi|124027572|ref|YP_001012892.1| - 0.058 13.5 0.0 0.067 13.2 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_7 PF02796.15 gi|124027572|ref|YP_001012892.1| - 0.069 13.2 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF603 PF04645.12 gi|124027572|ref|YP_001012892.1| - 0.076 12.7 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF603 DUF498 PF04430.14 gi|124027573|ref|YP_001012893.1| - 1.4e-15 57.3 0.0 1.6e-15 57.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) Metallophos_2 PF12850.7 gi|124027574|ref|YP_001012894.1| - 2.7e-32 112.2 0.1 3.1e-32 112.0 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|124027574|ref|YP_001012894.1| - 7.7e-06 26.5 0.1 0.0018 18.8 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|124027574|ref|YP_001012894.1| - 0.0091 15.3 0.2 0.041 13.2 0.0 1.9 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Usp PF00582.26 gi|124027575|ref|YP_001012895.1| - 1.1e-33 116.7 1.0 1.3e-33 116.5 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Ldh_2 PF02615.14 gi|124027575|ref|YP_001012895.1| - 0.0032 16.7 0.1 0.034 13.3 0.0 1.9 2 0 0 2 2 2 1 Malate/L-lactate dehydrogenase AP_endonuc_2 PF01261.24 gi|124027575|ref|YP_001012895.1| - 0.011 15.2 0.1 0.08 12.4 0.1 2.1 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Nitro_FeMo-Co PF02579.17 gi|124027575|ref|YP_001012895.1| - 0.014 15.7 1.1 0.15 12.4 0.1 2.6 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor PGM_PMM_I PF02878.16 gi|124027575|ref|YP_001012895.1| - 0.017 14.8 0.1 0.092 12.5 0.0 1.9 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IF3_N PF05198.16 gi|124027575|ref|YP_001012895.1| - 0.027 14.7 0.0 7 7.0 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain baeRF_family10 PF18854.1 gi|124027575|ref|YP_001012895.1| - 0.048 13.9 1.6 0.5 10.6 1.1 2.3 1 1 1 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 SBP_bac_11 PF13531.6 gi|124027576|ref|YP_001012896.1| - 0.0022 17.8 1.3 0.019 14.7 0.1 2.4 3 0 0 3 3 3 1 Bacterial extracellular solute-binding protein DHH PF01368.20 gi|124027576|ref|YP_001012896.1| - 0.0026 18.0 0.0 0.0053 17.0 0.0 1.5 1 0 0 1 1 1 1 DHH family NTP_transf_3 PF12804.7 gi|124027576|ref|YP_001012896.1| - 0.016 15.6 1.6 0.032 14.6 1.6 1.6 1 0 0 1 1 1 0 MobA-like NTP transferase domain DHHA1 PF02272.19 gi|124027576|ref|YP_001012896.1| - 0.1 13.0 0.1 0.2 12.1 0.1 1.4 1 0 0 1 1 1 0 DHHA1 domain Nitro_FeMo-Co PF02579.17 gi|124027577|ref|YP_001012897.1| - 9e-16 58.0 0.2 1.7e-15 57.1 0.0 1.5 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor Thioredoxin PF00085.20 gi|124027580|ref|YP_001012900.1| - 5.4e-11 42.4 0.0 7.6e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|124027580|ref|YP_001012900.1| - 5e-06 26.9 0.3 9.9e-06 26.0 0.1 1.5 2 0 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|124027580|ref|YP_001012900.1| - 0.00046 20.2 0.2 0.0018 18.3 0.1 1.9 2 0 0 2 2 2 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|124027580|ref|YP_001012900.1| - 0.0055 16.9 0.1 0.012 15.8 0.1 1.6 1 1 0 1 1 1 1 Glutaredoxin OST3_OST6 PF04756.13 gi|124027580|ref|YP_001012900.1| - 0.041 13.2 0.0 0.045 13.1 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family FAM163 PF15069.6 gi|124027580|ref|YP_001012900.1| - 0.065 13.7 0.1 0.089 13.2 0.1 1.4 1 1 0 1 1 1 0 FAM163 family Thioredoxin_9 PF14595.6 gi|124027580|ref|YP_001012900.1| - 0.087 12.6 0.0 0.12 12.1 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin KaiB PF07689.12 gi|124027580|ref|YP_001012900.1| - 0.14 11.9 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 KaiB domain PDDEXK_1 PF12705.7 gi|124027581|ref|YP_001012901.1| - 3.9e-08 33.5 0.0 4.7e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|124027581|ref|YP_001012901.1| - 0.013 15.6 0.0 0.034 14.2 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function DUF83 HTH_20 PF12840.7 gi|124027582|ref|YP_001012902.1| - 2.4e-09 37.1 0.0 6.6e-08 32.5 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|124027582|ref|YP_001012902.1| - 0.16 11.9 0.1 1.6 8.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family AAA_28 PF13521.6 gi|124027583|ref|YP_001012903.1| - 7.6e-25 88.0 0.0 8.7e-25 87.9 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|124027583|ref|YP_001012903.1| - 0.0004 20.9 0.0 0.00062 20.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|124027583|ref|YP_001012903.1| - 0.0017 18.1 0.0 0.0031 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|124027583|ref|YP_001012903.1| - 0.0024 17.6 0.0 0.003 17.3 0.0 1.4 1 1 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.6 gi|124027583|ref|YP_001012903.1| - 0.0044 17.2 0.0 0.0084 16.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|124027583|ref|YP_001012903.1| - 0.0055 16.2 0.0 0.0091 15.5 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 RuvB_N PF05496.12 gi|124027583|ref|YP_001012903.1| - 0.0059 16.4 0.0 0.0091 15.8 0.0 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|124027583|ref|YP_001012903.1| - 0.0085 16.5 0.0 0.012 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.23 gi|124027583|ref|YP_001012903.1| - 0.016 15.3 0.0 0.049 13.7 0.0 1.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 gi|124027583|ref|YP_001012903.1| - 0.022 14.7 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|124027583|ref|YP_001012903.1| - 0.026 14.5 0.0 0.057 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|124027583|ref|YP_001012903.1| - 0.04 13.2 0.0 0.16 11.2 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin NTPase_1 PF03266.15 gi|124027583|ref|YP_001012903.1| - 0.046 13.6 0.0 0.081 12.8 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_22 PF13401.6 gi|124027583|ref|YP_001012903.1| - 0.052 13.8 0.0 0.072 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|124027583|ref|YP_001012903.1| - 0.061 12.3 0.0 0.097 11.6 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ParA PF10609.9 gi|124027583|ref|YP_001012903.1| - 0.068 12.6 0.0 0.098 12.1 0.0 1.2 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA PF00004.29 gi|124027583|ref|YP_001012903.1| - 0.082 13.3 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_31 PF13614.6 gi|124027583|ref|YP_001012903.1| - 0.084 12.8 0.0 0.38 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|124027583|ref|YP_001012903.1| - 0.098 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|124027583|ref|YP_001012903.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_19 PF13245.6 gi|124027583|ref|YP_001012903.1| - 0.16 12.3 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Acetyltransf_1 PF00583.25 gi|124027583|ref|YP_001012903.1| - 0.23 11.7 1.0 4 7.7 0.1 2.2 1 1 0 2 2 2 0 Acetyltransferase (GNAT) family ATP_bind_1 PF03029.17 gi|124027583|ref|YP_001012903.1| - 0.24 11.2 0.0 0.38 10.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Phosphodiest PF01663.22 gi|124027585|ref|YP_001012905.1| - 8.3e-08 32.2 0.1 1.7e-07 31.2 0.1 1.6 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|124027585|ref|YP_001012905.1| - 0.073 13.2 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 PglZ domain Herpes_LMP2 PF07415.11 gi|124027586|ref|YP_001012906.1| - 0.066 12.0 2.7 0.072 11.9 2.7 1.0 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein NACHT_N PF17100.5 gi|124027586|ref|YP_001012906.1| - 0.16 11.8 0.2 0.18 11.6 0.2 1.0 1 0 0 1 1 1 0 N-terminal domain of NWD NACHT-NTPase DUF2207 PF09972.9 gi|124027586|ref|YP_001012906.1| - 1.5 7.5 3.4 1.8 7.2 3.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) HTH_24 PF13412.6 gi|124027587|ref|YP_001012907.1| - 3.8e-08 32.8 2.3 1e-07 31.4 0.1 2.4 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|124027587|ref|YP_001012907.1| - 6.3e-06 26.0 0.4 6.3e-06 26.0 0.4 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|124027587|ref|YP_001012907.1| - 9.5e-06 25.4 0.1 1.7e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|124027587|ref|YP_001012907.1| - 0.00022 21.5 0.0 0.0003 21.1 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|124027587|ref|YP_001012907.1| - 0.0011 18.8 0.4 0.0025 17.6 0.4 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|124027587|ref|YP_001012907.1| - 0.0012 18.9 0.0 0.0022 18.1 0.0 1.5 2 0 0 2 2 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|124027587|ref|YP_001012907.1| - 0.0014 18.4 0.0 0.0087 15.8 0.0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) FaeA PF04703.12 gi|124027587|ref|YP_001012907.1| - 0.0026 18.1 0.0 0.0083 16.5 0.0 1.7 1 1 1 2 2 2 1 FaeA-like protein PaaX PF07848.12 gi|124027587|ref|YP_001012907.1| - 0.0026 17.9 0.1 0.005 17.0 0.1 1.5 1 0 0 1 1 1 1 PaaX-like protein TSC22 PF01166.18 gi|124027587|ref|YP_001012907.1| - 0.0031 17.8 1.6 0.0062 16.8 1.6 1.4 1 0 0 1 1 1 1 TSC-22/dip/bun family ZapB PF06005.12 gi|124027587|ref|YP_001012907.1| - 0.0033 17.8 0.7 0.009 16.4 0.2 1.9 2 0 0 2 2 2 1 Cell division protein ZapB DUF1192 PF06698.11 gi|124027587|ref|YP_001012907.1| - 0.0035 17.3 1.1 0.0035 17.3 1.1 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF1192) DUF4201 PF13870.6 gi|124027587|ref|YP_001012907.1| - 0.0037 17.0 0.1 0.0059 16.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) HTH_20 PF12840.7 gi|124027587|ref|YP_001012907.1| - 0.0048 16.9 0.9 0.0048 16.9 0.9 2.4 2 1 1 3 3 3 1 Helix-turn-helix domain DUF4140 PF13600.6 gi|124027587|ref|YP_001012907.1| - 0.0052 17.2 1.1 0.12 12.9 0.2 2.0 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) Rrf2 PF02082.20 gi|124027587|ref|YP_001012907.1| - 0.0083 16.4 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|124027587|ref|YP_001012907.1| - 0.012 15.3 0.6 0.18 11.5 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 Sun2_CC2 PF18580.1 gi|124027587|ref|YP_001012907.1| - 0.014 15.6 1.3 0.22 11.8 0.0 2.8 3 0 0 3 3 3 0 SUN2 coiled coil domain 2 BLOC1_2 PF10046.9 gi|124027587|ref|YP_001012907.1| - 0.014 15.7 0.0 0.022 15.1 0.0 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BMFP PF04380.13 gi|124027587|ref|YP_001012907.1| - 0.016 15.7 5.2 0.084 13.4 2.3 2.4 2 0 0 2 2 2 0 Membrane fusogenic activity HTH_Crp_2 PF13545.6 gi|124027587|ref|YP_001012907.1| - 0.016 15.2 0.0 0.039 13.9 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fib_alpha PF08702.10 gi|124027587|ref|YP_001012907.1| - 0.017 15.3 0.1 0.037 14.2 0.1 1.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family GntR PF00392.21 gi|124027587|ref|YP_001012907.1| - 0.023 14.4 1.4 0.03 14.0 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|124027587|ref|YP_001012907.1| - 0.031 14.1 0.2 0.15 11.9 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain ABC_tran_CTD PF16326.5 gi|124027587|ref|YP_001012907.1| - 0.033 14.4 1.4 0.074 13.3 0.5 2.0 2 1 0 2 2 2 0 ABC transporter C-terminal domain Replic_Relax PF13814.6 gi|124027587|ref|YP_001012907.1| - 0.034 14.2 0.0 0.064 13.3 0.0 1.3 1 1 0 1 1 1 0 Replication-relaxation HSBP1 PF06825.12 gi|124027587|ref|YP_001012907.1| - 0.038 13.9 0.2 0.07 13.0 0.2 1.4 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Phage_rep_org_N PF09681.10 gi|124027587|ref|YP_001012907.1| - 0.042 13.8 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Csm1_N PF18504.1 gi|124027587|ref|YP_001012907.1| - 0.048 14.0 0.1 0.098 13.0 0.1 1.5 1 0 0 1 1 1 0 Csm1 N-terminal domain Clp_N PF02861.20 gi|124027587|ref|YP_001012907.1| - 0.063 13.4 0.1 12 6.1 0.0 2.3 2 0 0 2 2 2 0 Clp amino terminal domain, pathogenicity island component DivIC PF04977.15 gi|124027587|ref|YP_001012907.1| - 0.064 13.0 0.9 0.091 12.5 0.2 1.5 2 0 0 2 2 1 0 Septum formation initiator HTH_AsnC-type PF13404.6 gi|124027587|ref|YP_001012907.1| - 0.064 13.1 1.1 0.064 13.1 1.1 3.1 3 1 1 4 4 4 0 AsnC-type helix-turn-helix domain Thiamine_BP PF01910.17 gi|124027587|ref|YP_001012907.1| - 0.077 12.9 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Thiamine-binding protein Myb_DNA-binding PF00249.31 gi|124027587|ref|YP_001012907.1| - 0.086 13.0 0.0 0.26 11.5 0.0 1.9 2 0 0 2 2 1 0 Myb-like DNA-binding domain DUF3489 PF11994.8 gi|124027587|ref|YP_001012907.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) ORF6C PF10552.9 gi|124027587|ref|YP_001012907.1| - 0.13 12.3 0.1 0.22 11.6 0.1 1.4 1 0 0 1 1 1 0 ORF6C domain DivIVA PF05103.13 gi|124027587|ref|YP_001012907.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 DivIVA protein Herpes_UL6 PF01763.16 gi|124027587|ref|YP_001012907.1| - 0.18 10.3 0.0 0.19 10.2 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like HTH_32 PF13565.6 gi|124027587|ref|YP_001012907.1| - 0.53 10.9 6.3 0.54 10.9 0.1 2.6 1 1 1 2 2 2 0 Homeodomain-like domain Cas_DxTHG PF09455.10 gi|124027589|ref|YP_001012909.1| - 2.3e-35 122.9 0.6 3.1e-35 122.4 0.6 1.2 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family RAMPs PF03787.15 gi|124027590|ref|YP_001012910.1| - 3.4e-22 79.5 0.0 4.5e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 RAMP superfamily Cas_Cmr5 PF09701.10 gi|124027591|ref|YP_001012911.1| - 1.6e-07 31.6 0.0 4.4e-07 30.2 0.0 1.7 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.15 gi|124027592|ref|YP_001012912.1| - 0.008 16.2 0.0 0.019 15.0 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily Cas6b_C PF17262.2 gi|124027592|ref|YP_001012912.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Cas6b C-terminal domain RAMPs PF03787.15 gi|124027593|ref|YP_001012913.1| - 4.9e-11 43.1 0.2 3.6e-10 40.2 0.0 2.0 2 0 0 2 2 2 1 RAMP superfamily DUF3692 PF12469.8 gi|124027594|ref|YP_001012914.1| - 7.9e-25 87.2 0.0 2.4e-24 85.7 0.0 1.8 1 0 0 1 1 1 1 CRISPR-associated protein DUF4239 PF14023.6 gi|124027594|ref|YP_001012914.1| - 0.051 13.3 0.1 0.19 11.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4239) Cas_Cmr3 PF09700.10 gi|124027595|ref|YP_001012915.1| - 9.3e-11 41.7 0.0 0.00021 20.9 0.0 2.2 2 0 0 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) UPF0126 PF03458.13 gi|124027595|ref|YP_001012915.1| - 0.015 15.2 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 UPF0126 domain Toxin_13 PF07822.11 gi|124027595|ref|YP_001012915.1| - 7.9 6.7 8.1 0.76 10.0 1.4 2.5 2 1 1 3 3 3 0 Neurotoxin B-IV-like protein Methyltr_RsmB-F PF01189.17 gi|124027597|ref|YP_001012917.1| - 5.3e-47 160.1 0.0 3.7e-46 157.3 0.0 1.9 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|124027597|ref|YP_001012917.1| - 3.7e-08 33.2 0.9 8.8e-08 32.0 0.9 1.7 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 gi|124027597|ref|YP_001012917.1| - 3e-07 30.4 0.0 4.5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|124027597|ref|YP_001012917.1| - 3.7e-05 23.9 0.0 0.00013 22.1 0.0 1.8 2 1 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|124027597|ref|YP_001012917.1| - 9.1e-05 23.1 0.0 0.0021 18.7 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|124027597|ref|YP_001012917.1| - 0.00041 20.9 0.0 0.0084 16.7 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|124027597|ref|YP_001012917.1| - 0.0039 16.6 0.0 0.26 10.6 0.0 2.2 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Cons_hypoth95 PF03602.15 gi|124027597|ref|YP_001012917.1| - 0.0069 16.0 0.0 0.014 15.1 0.0 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 PCMT PF01135.19 gi|124027597|ref|YP_001012917.1| - 0.015 15.1 0.0 0.033 13.9 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|124027597|ref|YP_001012917.1| - 0.025 15.3 0.0 0.065 14.0 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|124027597|ref|YP_001012917.1| - 0.028 14.3 0.0 0.077 12.8 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain CmcI PF04989.12 gi|124027597|ref|YP_001012917.1| - 0.034 13.8 0.0 0.075 12.7 0.0 1.5 2 0 0 2 2 2 0 Cephalosporin hydroxylase Methyltransf_24 PF13578.6 gi|124027597|ref|YP_001012917.1| - 0.18 12.8 0.0 1.5 9.8 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain PIN_6 PF17146.4 gi|124027598|ref|YP_001012918.1| - 9.2e-19 67.7 0.0 1.5e-18 67.1 0.0 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease zf-ribbon_3 PF13248.6 gi|124027598|ref|YP_001012918.1| - 0.00037 19.8 2.5 0.0008 18.7 2.5 1.6 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|124027598|ref|YP_001012918.1| - 0.00079 19.1 3.0 0.0027 17.4 3.0 1.8 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|124027598|ref|YP_001012918.1| - 0.00084 19.3 0.1 0.0015 18.5 0.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon PIN_5 PF08745.11 gi|124027598|ref|YP_001012918.1| - 0.0014 18.1 0.9 0.0035 16.8 0.1 1.8 2 0 0 2 2 2 1 PINc domain ribonuclease zf-NADH-PPase PF09297.11 gi|124027598|ref|YP_001012918.1| - 0.0028 17.3 2.7 1.2 8.9 0.4 2.4 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.12 gi|124027598|ref|YP_001012918.1| - 0.0047 17.0 1.3 0.091 12.9 0.2 2.2 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PIN PF01850.21 gi|124027598|ref|YP_001012918.1| - 0.012 16.1 0.0 0.03 14.8 0.0 1.7 1 1 0 1 1 1 0 PIN domain PIN_4 PF13638.6 gi|124027598|ref|YP_001012918.1| - 0.021 15.1 0.0 0.042 14.1 0.0 1.6 2 0 0 2 2 2 0 PIN domain Nudix_N_2 PF14803.6 gi|124027598|ref|YP_001012918.1| - 0.038 13.9 4.1 0.85 9.6 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|124027598|ref|YP_001012918.1| - 0.039 14.1 4.9 0.87 9.8 5.0 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Rad50_zn_hook PF04423.14 gi|124027598|ref|YP_001012918.1| - 0.042 13.7 1.9 0.46 10.4 0.6 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif Zn_ribbon_SprT PF17283.2 gi|124027598|ref|YP_001012918.1| - 0.045 13.7 7.7 1.1 9.2 0.3 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-C3HC4_3 PF13920.6 gi|124027598|ref|YP_001012918.1| - 0.046 13.6 0.7 0.065 13.1 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TF_Zn_Ribbon PF08271.12 gi|124027598|ref|YP_001012918.1| - 0.063 12.8 4.6 1 9.0 4.2 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-UDP PF14569.6 gi|124027598|ref|YP_001012918.1| - 0.077 13.1 2.1 0.15 12.2 2.1 1.5 1 0 0 1 1 1 0 Zinc-binding RING-finger DNA_ligase_ZBD PF03119.16 gi|124027598|ref|YP_001012918.1| - 0.078 13.0 6.6 0.17 12.0 1.1 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|124027598|ref|YP_001012918.1| - 0.1 12.5 1.9 0.37 10.7 1.9 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|124027598|ref|YP_001012918.1| - 0.14 12.3 0.2 0.33 11.1 0.2 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C4_Topoisom PF01396.19 gi|124027598|ref|YP_001012918.1| - 0.18 11.6 2.6 0.94 9.3 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger HypA PF01155.19 gi|124027598|ref|YP_001012918.1| - 0.29 11.2 0.5 0.42 10.7 0.5 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|124027598|ref|YP_001012918.1| - 0.6 10.1 8.3 5.5 7.0 1.9 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain NRDD PF13597.6 gi|124027598|ref|YP_001012918.1| - 0.76 8.5 1.5 1 8.1 1.5 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase UPF0547 PF10571.9 gi|124027598|ref|YP_001012918.1| - 0.99 9.6 4.1 15 5.8 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.6 gi|124027598|ref|YP_001012918.1| - 0.99 9.4 4.8 3.7 7.5 4.9 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Ogr_Delta PF04606.12 gi|124027598|ref|YP_001012918.1| - 4.2 7.4 5.4 3.6 7.7 0.9 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger NAD_kinase PF01513.21 gi|124027600|ref|YP_001012919.1| - 1.9e-29 102.8 0.3 1.8e-27 96.3 0.3 2.2 2 1 0 2 2 2 2 ATP-NAD kinase DAGK_cat PF00781.24 gi|124027600|ref|YP_001012919.1| - 0.0049 16.5 0.0 0.0093 15.6 0.0 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Met_10 PF02475.16 gi|124027599|ref|YP_001012920.1| - 1e-37 129.9 0.0 1.3e-37 129.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltr_RsmB-F PF01189.17 gi|124027599|ref|YP_001012920.1| - 0.003 17.2 0.0 0.0051 16.5 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F DNA_methylase PF00145.17 gi|124027599|ref|YP_001012920.1| - 0.014 14.7 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase MTS PF05175.14 gi|124027599|ref|YP_001012920.1| - 0.023 14.2 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DHH PF01368.20 gi|124027601|ref|YP_001012921.1| - 0.00013 22.1 0.0 0.00031 20.9 0.0 1.6 1 0 0 1 1 1 1 DHH family Meth_synt_1 PF08267.12 gi|124027602|ref|YP_001012922.1| - 7.4e-13 48.7 0.0 1.1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|124027602|ref|YP_001012922.1| - 0.00014 21.3 0.0 0.0011 18.4 0.0 2.0 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain PFOR_II PF17147.4 gi|124027602|ref|YP_001012922.1| - 0.0028 17.9 0.0 0.012 15.9 0.0 2.0 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Meth_synt_2 PF01717.18 gi|124027605|ref|YP_001012925.1| - 9.7e-68 228.8 0.0 1.1e-67 228.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|124027605|ref|YP_001012925.1| - 2.2e-15 57.0 0.0 3.2e-14 53.1 0.0 2.0 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|124027605|ref|YP_001012925.1| - 0.00035 19.8 0.0 0.0013 18.0 0.0 1.8 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) SHOCT PF09851.9 gi|124027605|ref|YP_001012925.1| - 0.046 13.5 0.2 0.17 11.7 0.2 2.0 1 0 0 1 1 1 0 Short C-terminal domain Birna_VP3 PF01767.16 gi|124027606|ref|YP_001012926.1| - 0.05 13.7 0.2 0.099 12.7 0.1 1.4 2 0 0 2 2 2 0 Birnavirus VP3 protein TPP_enzyme_C PF02775.21 gi|124027608|ref|YP_001012928.1| - 1.4e-22 80.1 0.1 2.2e-22 79.5 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Glyco_transf_4 PF13439.6 gi|124027608|ref|YP_001012928.1| - 0.00059 19.9 0.3 0.014 15.4 0.3 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 E1_dh PF00676.20 gi|124027608|ref|YP_001012928.1| - 0.00085 18.4 0.2 0.0012 17.8 0.2 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|124027608|ref|YP_001012928.1| - 0.0011 18.3 0.0 0.0016 17.7 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Glyco_trans_4_4 PF13579.6 gi|124027608|ref|YP_001012928.1| - 0.35 11.3 2.3 3.5 8.0 2.3 2.1 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain POR_N PF01855.19 gi|124027609|ref|YP_001012929.1| - 3e-70 236.5 2.4 3.8e-70 236.2 2.4 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|124027609|ref|YP_001012929.1| - 3.7e-30 104.2 0.0 9.5e-30 102.9 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|124027609|ref|YP_001012929.1| - 1.6e-09 37.7 0.0 3.4e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|124027609|ref|YP_001012929.1| - 0.003 17.2 3.0 0.0058 16.3 2.6 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|124027610|ref|YP_001012930.1| - 3.5e-12 45.6 11.1 2e-09 36.9 5.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|124027610|ref|YP_001012930.1| - 1.3e-10 41.7 6.0 1.6e-10 41.4 6.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|124027610|ref|YP_001012930.1| - 8.2e-09 35.5 17.4 1.7e-05 24.8 1.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124027610|ref|YP_001012930.1| - 3e-08 34.5 4.7 4.3e-06 27.6 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|124027610|ref|YP_001012930.1| - 9.6e-08 32.0 8.7 3.9e-07 30.1 8.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124027610|ref|YP_001012930.1| - 1.6e-06 27.9 12.2 1.3e-05 25.0 5.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|124027610|ref|YP_001012930.1| - 2e-06 27.9 6.2 3.3e-06 27.1 6.2 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124027610|ref|YP_001012930.1| - 5.7e-05 23.0 3.6 5.7e-05 23.0 3.6 2.1 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|124027610|ref|YP_001012930.1| - 0.00017 21.9 2.4 0.0023 18.4 0.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124027610|ref|YP_001012930.1| - 0.00039 20.7 7.1 0.0046 17.4 2.1 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|124027610|ref|YP_001012930.1| - 0.0019 18.7 5.4 0.03 14.9 1.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|124027610|ref|YP_001012930.1| - 0.0052 17.5 8.5 0.12 13.1 3.3 2.9 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|124027610|ref|YP_001012930.1| - 0.016 16.1 3.5 0.027 15.3 0.3 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|124027610|ref|YP_001012930.1| - 0.037 15.0 8.1 0.037 15.0 8.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|124027610|ref|YP_001012930.1| - 0.042 14.4 7.0 0.2 12.2 1.8 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I POR PF01558.18 gi|124027611|ref|YP_001012931.1| - 3.1e-33 115.3 0.1 4.1e-33 114.9 0.1 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Torsin PF06309.11 gi|124027611|ref|YP_001012931.1| - 0.21 11.7 0.0 7.8 6.6 0.0 2.4 3 0 0 3 3 3 0 Torsin ExsD PF16806.5 gi|124027611|ref|YP_001012931.1| - 0.27 11.1 0.0 0.37 10.7 0.0 1.1 1 0 0 1 1 1 0 Antiactivator protein ExsD DUF72 PF01904.18 gi|124027612|ref|YP_001012932.1| - 6.3e-45 154.0 1.0 7.6e-45 153.7 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 PIN PF01850.21 gi|124027613|ref|YP_001012933.1| - 1.1e-06 29.1 0.2 1.4e-06 28.8 0.2 1.1 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|124027614|ref|YP_001012934.1| - 0.0019 18.1 0.0 0.0026 17.6 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin TrmO PF01980.16 gi|124027615|ref|YP_001012935.1| - 4.9e-30 104.2 0.0 6.3e-30 103.8 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O AFOR_C PF01314.18 gi|124027616|ref|YP_001012936.1| - 2.8e-92 309.7 0.0 3.4e-92 309.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|124027616|ref|YP_001012936.1| - 1.3e-65 220.9 0.1 2.6e-65 220.0 0.1 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Band_7 PF01145.25 gi|124027617|ref|YP_001012937.1| - 5.1e-12 46.2 0.3 5.8e-12 46.0 0.3 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7 PF01145.25 gi|124027618|ref|YP_001012938.1| - 6.7e-12 45.8 1.0 9.4e-12 45.3 1.0 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family ThiD2 PF17792.1 gi|124027618|ref|YP_001012938.1| - 0.016 15.6 0.7 0.024 15.1 0.7 1.2 1 0 0 1 1 1 0 ThiD2 family Band_7_1 PF13421.6 gi|124027618|ref|YP_001012938.1| - 0.055 13.2 0.0 0.079 12.7 0.0 1.2 1 0 0 1 1 1 0 SPFH domain-Band 7 family DUF4234 PF14018.6 gi|124027619|ref|YP_001012939.1| - 2e-08 34.2 0.3 2e-08 34.2 0.3 3.3 3 1 0 3 3 3 1 Domain of unknown function (DUF4234) Yip1 PF04893.17 gi|124027619|ref|YP_001012939.1| - 3.8e-06 26.7 3.1 0.022 14.5 0.1 2.3 2 0 0 2 2 2 2 Yip1 domain Glucos_trans_II PF14264.6 gi|124027619|ref|YP_001012939.1| - 0.00077 18.9 0.7 0.12 11.7 0.0 2.8 3 0 0 3 3 3 1 Glucosyl transferase GtrII DUF4448 PF14610.6 gi|124027619|ref|YP_001012939.1| - 0.0019 18.0 0.9 2.8 7.7 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF4448) XK-related PF09815.9 gi|124027619|ref|YP_001012939.1| - 0.0092 15.1 0.4 0.092 11.8 0.4 2.2 1 1 0 1 1 1 1 XK-related protein DUF3139 PF11337.8 gi|124027619|ref|YP_001012939.1| - 0.014 16.0 8.9 0.12 13.1 0.0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF3139) MFS_1 PF07690.16 gi|124027619|ref|YP_001012939.1| - 0.022 13.7 7.0 0.14 11.1 0.3 2.7 2 1 0 2 2 2 0 Major Facilitator Superfamily Amnionless PF14828.6 gi|124027619|ref|YP_001012939.1| - 0.097 11.5 0.1 0.21 10.4 0.0 1.6 1 1 0 1 1 1 0 Amnionless MHC2-interact PF09307.10 gi|124027619|ref|YP_001012939.1| - 0.17 11.9 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 CLIP, MHC2 interacting DUF5313 PF17240.2 gi|124027619|ref|YP_001012939.1| - 0.37 11.2 6.0 25 5.3 0.5 3.4 2 1 1 3 3 3 0 Family of unknown function (DUF5313) DHHC PF01529.20 gi|124027619|ref|YP_001012939.1| - 0.97 9.5 4.1 3.8 7.6 0.1 2.6 2 1 1 3 3 3 0 DHHC palmitoyltransferase DUF2207 PF09972.9 gi|124027619|ref|YP_001012939.1| - 1.6 7.4 8.5 0.74 8.5 1.0 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Radical_SAM PF04055.21 gi|124027620|ref|YP_001012940.1| - 1.1e-28 100.7 0.1 6e-28 98.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|124027620|ref|YP_001012940.1| - 4.9e-13 49.2 0.6 1.1e-12 48.1 0.6 1.5 1 0 0 1 1 1 1 B12 binding domain Hydrolase PF00702.26 gi|124027620|ref|YP_001012940.1| - 0.0036 17.6 0.1 1.3 9.2 0.0 2.6 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 gi|124027622|ref|YP_001012942.1| - 4.3e-18 66.2 0.2 2.3e-16 60.6 0.1 2.3 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|124027622|ref|YP_001012942.1| - 0.029 14.4 0.1 0.079 13.0 0.1 1.8 1 0 0 1 1 1 0 B12 binding domain FbpC_C_terminal PF17845.1 gi|124027622|ref|YP_001012942.1| - 0.078 13.1 0.0 0.21 11.7 0.0 1.7 1 0 0 1 1 1 0 FbpC C-terminal regulatory nucleotide binding domain ATPase_2 PF01637.18 gi|124027623|ref|YP_001012943.1| - 2.4e-44 152.0 0.0 3e-44 151.7 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|124027623|ref|YP_001012943.1| - 1.4e-08 35.3 1.7 4.6e-08 33.6 0.9 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|124027623|ref|YP_001012943.1| - 1.6e-07 31.7 0.0 3.7e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|124027623|ref|YP_001012943.1| - 0.00026 21.4 0.0 0.00082 19.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.14 gi|124027623|ref|YP_001012943.1| - 0.00076 18.8 0.0 0.0097 15.2 0.0 2.0 2 0 0 2 2 2 1 KAP family P-loop domain RNA_helicase PF00910.22 gi|124027623|ref|YP_001012943.1| - 0.0018 18.6 0.0 0.0038 17.6 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_5 PF07728.14 gi|124027623|ref|YP_001012943.1| - 0.0049 16.9 0.0 0.0083 16.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|124027623|ref|YP_001012943.1| - 0.0058 16.6 0.0 0.015 15.2 0.0 1.8 2 1 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 gi|124027623|ref|YP_001012943.1| - 0.0084 16.7 0.0 0.017 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|124027623|ref|YP_001012943.1| - 0.0089 15.5 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_28 PF13521.6 gi|124027623|ref|YP_001012943.1| - 0.032 14.5 0.0 0.054 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|124027623|ref|YP_001012943.1| - 0.033 14.2 0.0 0.069 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|124027623|ref|YP_001012943.1| - 0.066 13.1 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_7 PF12775.7 gi|124027623|ref|YP_001012943.1| - 0.066 12.7 0.0 0.31 10.5 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|124027623|ref|YP_001012943.1| - 0.071 12.7 0.1 0.92 9.0 0.1 2.4 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|124027623|ref|YP_001012943.1| - 0.093 12.0 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin PIF1 PF05970.14 gi|124027623|ref|YP_001012943.1| - 0.14 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Adeno_IVa2 PF02456.15 gi|124027623|ref|YP_001012943.1| - 0.2 10.4 0.0 0.31 9.8 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein PIN PF01850.21 gi|124027624|ref|YP_001012944.1| - 0.016 15.7 0.1 0.02 15.4 0.1 1.2 1 0 0 1 1 1 0 PIN domain MetW PF07021.12 gi|124027624|ref|YP_001012944.1| - 0.15 11.6 0.0 0.18 11.4 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MazE_antitoxin PF04014.18 gi|124027625|ref|YP_001012945.1| - 0.0015 18.4 1.2 0.0022 17.9 0.4 1.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin MFS_1 PF07690.16 gi|124027626|ref|YP_001012946.1| - 1.8e-24 86.3 49.6 6.3e-17 61.5 32.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|124027626|ref|YP_001012946.1| - 1.1e-06 27.9 13.6 2e-06 26.9 13.6 1.4 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|124027626|ref|YP_001012946.1| - 0.00017 20.5 8.7 0.00017 20.5 8.7 2.3 1 1 1 2 2 2 1 MFS_1 like family OATP PF03137.20 gi|124027626|ref|YP_001012946.1| - 3 6.0 7.8 0.63 8.3 1.8 2.3 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Aldo_ket_red PF00248.21 gi|124027628|ref|YP_001012948.1| - 2.2e-56 191.2 0.0 2.5e-56 191.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Asparaginase_C PF17763.1 gi|124027628|ref|YP_001012948.1| - 0.047 13.9 0.7 0.98 9.7 0.1 2.6 3 0 0 3 3 3 0 Glutaminase/Asparaginase C-terminal domain RHH_1 PF01402.21 gi|124027628|ref|YP_001012948.1| - 0.11 12.5 0.4 1 9.4 0.1 2.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family GATase_6 PF13522.6 gi|124027629|ref|YP_001012949.1| - 8.2e-13 48.7 0.1 1.4e-12 48.0 0.1 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF4158 PF13700.6 gi|124027630|ref|YP_001012950.1| - 0.058 13.2 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4158) BAG6 PF12057.8 gi|124027630|ref|YP_001012950.1| - 0.15 11.8 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 BCL2-associated athanogene 6 Sua5_yciO_yrdC PF01300.18 gi|124027632|ref|YP_001012952.1| - 1.4e-46 158.3 0.0 2e-46 157.7 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|124027632|ref|YP_001012952.1| - 8.9e-26 90.6 0.1 1.6e-25 89.7 0.1 1.4 1 0 0 1 1 1 1 HypF Kae1-like domain zf-HYPF PF07503.12 gi|124027632|ref|YP_001012952.1| - 1.1e-24 85.8 11.8 4.6e-12 45.5 1.1 2.3 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.18 gi|124027632|ref|YP_001012952.1| - 1.9e-21 76.2 0.0 3.4e-21 75.5 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|124027632|ref|YP_001012952.1| - 0.019 14.7 0.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Glycoprotease family DZR PF12773.7 gi|124027632|ref|YP_001012952.1| - 0.15 12.1 1.7 8.2 6.6 0.3 2.4 2 0 0 2 2 2 0 Double zinc ribbon Cys_rich_KTR PF14205.6 gi|124027632|ref|YP_001012952.1| - 1.6 8.6 3.2 6.5 6.6 0.4 2.7 2 0 0 2 2 2 0 Cysteine-rich KTR C1_1 PF00130.22 gi|124027632|ref|YP_001012952.1| - 2.4 8.1 3.9 10 6.1 0.2 2.3 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HupF_HypC PF01455.18 gi|124027633|ref|YP_001012953.1| - 2.1e-18 66.2 1.2 3.3e-18 65.6 1.2 1.3 1 0 0 1 1 1 1 HupF/HypC family Cortex-I_coil PF09304.10 gi|124027633|ref|YP_001012953.1| - 0.00038 20.6 0.1 0.00044 20.4 0.1 1.2 1 0 0 1 1 1 1 Cortexillin I, coiled coil RsbU_N PF08673.10 gi|124027633|ref|YP_001012953.1| - 0.081 13.0 0.5 2.9 8.1 0.2 2.4 1 1 1 2 2 2 0 Phosphoserine phosphatase RsbU, N-terminal domain Prot_ATP_ID_OB PF16450.5 gi|124027633|ref|YP_001012953.1| - 0.092 12.7 0.1 0.15 12.1 0.1 1.5 1 1 0 1 1 1 0 Proteasomal ATPase OB C-terminal domain ROS_MUCR PF05443.11 gi|124027633|ref|YP_001012953.1| - 0.13 12.3 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein YajC PF02699.15 gi|124027633|ref|YP_001012953.1| - 0.17 11.8 1.9 0.66 9.9 0.4 2.4 1 1 2 3 3 3 0 Preprotein translocase subunit HypD PF01924.16 gi|124027634|ref|YP_001012954.1| - 1.1e-124 416.1 0.0 1.2e-124 415.9 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.6 gi|124027634|ref|YP_001012954.1| - 0.0034 17.2 0.0 0.0074 16.1 0.0 1.5 1 0 0 1 1 1 1 zf-RING of BARD1-type protein DUF134 PF02001.16 gi|124027635|ref|YP_001012955.1| - 5.6e-24 84.6 0.0 7e-24 84.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|124027635|ref|YP_001012955.1| - 1.3e-08 34.4 0.1 1.7e-08 34.0 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|124027635|ref|YP_001012955.1| - 2.6e-08 33.2 0.0 4.4e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|124027635|ref|YP_001012955.1| - 6.2e-05 22.7 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|124027635|ref|YP_001012955.1| - 7.3e-05 22.7 0.1 9e-05 22.4 0.1 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_psq PF05225.16 gi|124027635|ref|YP_001012955.1| - 0.00029 20.5 0.0 0.00044 19.9 0.0 1.2 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_31 PF13560.6 gi|124027635|ref|YP_001012955.1| - 0.0013 19.1 0.4 0.0022 18.3 0.4 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|124027635|ref|YP_001012955.1| - 0.0024 17.9 0.0 0.0037 17.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_1 PF00126.27 gi|124027635|ref|YP_001012955.1| - 0.004 17.1 0.1 0.0059 16.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_38 PF13936.6 gi|124027635|ref|YP_001012955.1| - 0.0089 15.8 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|124027635|ref|YP_001012955.1| - 0.016 15.2 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.6 gi|124027635|ref|YP_001012955.1| - 0.028 14.0 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_8 PF02954.19 gi|124027635|ref|YP_001012955.1| - 0.031 14.1 0.1 0.056 13.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_17 PF12728.7 gi|124027635|ref|YP_001012955.1| - 0.049 13.8 0.1 0.097 12.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|124027635|ref|YP_001012955.1| - 0.052 13.6 1.3 0.054 13.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix DUF1492 PF07374.11 gi|124027635|ref|YP_001012955.1| - 0.059 13.5 0.0 0.079 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) TnsD PF15978.5 gi|124027635|ref|YP_001012955.1| - 0.15 11.0 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_7 PF02796.15 gi|124027635|ref|YP_001012955.1| - 0.48 10.5 0.0 0.48 10.5 0.0 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase Fer4 PF00037.27 gi|124027636|ref|YP_001012956.1| - 2.1e-15 55.8 23.7 7.8e-09 35.0 2.3 4.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|124027636|ref|YP_001012956.1| - 7.6e-09 36.0 16.3 8.9e-05 23.0 0.5 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124027636|ref|YP_001012956.1| - 2.1e-08 34.2 6.4 2.1e-08 34.2 6.4 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|124027636|ref|YP_001012956.1| - 2.4e-07 30.8 21.5 3.4e-06 27.1 11.5 3.5 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|124027636|ref|YP_001012956.1| - 6.8e-07 29.3 11.0 6.8e-07 29.3 11.0 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124027636|ref|YP_001012956.1| - 1.5e-06 28.0 1.3 1.5e-06 28.0 1.3 3.9 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|124027636|ref|YP_001012956.1| - 5.7e-06 27.2 21.4 0.00082 20.3 1.4 3.7 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|124027636|ref|YP_001012956.1| - 5.2e-05 23.1 10.0 0.00036 20.4 2.3 4.2 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|124027636|ref|YP_001012956.1| - 0.0034 17.9 14.0 0.31 11.6 3.6 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|124027636|ref|YP_001012956.1| - 0.004 17.8 0.9 0.004 17.8 0.9 3.5 3 1 0 3 3 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|124027636|ref|YP_001012956.1| - 0.02 15.3 13.3 0.02 15.3 13.3 3.6 4 1 1 5 5 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|124027636|ref|YP_001012956.1| - 1.6 9.3 26.2 0.88 10.2 12.7 4.0 3 1 0 3 3 3 0 4Fe-4S dicluster domain GP57 PF17594.2 gi|124027637|ref|YP_001012957.1| - 0.065 13.0 0.6 0.56 10.0 0.2 2.1 2 0 0 2 2 2 0 Phage Tail fiber assembly helper gene product 57 PIN PF01850.21 gi|124027639|ref|YP_001012959.1| - 1.8e-16 60.8 0.7 2e-16 60.6 0.7 1.0 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|124027640|ref|YP_001012960.1| - 5.7e-12 45.3 1.3 8.5e-12 44.7 1.3 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF1905 PF08922.11 gi|124027640|ref|YP_001012960.1| - 0.035 14.2 0.1 0.055 13.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Methyltr_RsmB-F PF01189.17 gi|124027641|ref|YP_001012961.1| - 9.4e-29 100.5 0.0 1.5e-28 99.8 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F UPF0020 PF01170.18 gi|124027641|ref|YP_001012961.1| - 0.051 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Glycos_transf_2 PF00535.26 gi|124027642|ref|YP_001012962.1| - 3.2e-22 79.1 0.0 4.1e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|124027642|ref|YP_001012962.1| - 8.8e-12 45.4 0.0 1.2e-11 45.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|124027642|ref|YP_001012962.1| - 0.0022 17.5 0.0 0.0039 16.7 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|124027642|ref|YP_001012962.1| - 0.0048 17.4 0.0 0.0086 16.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Cas_APE2256 PF09651.10 gi|124027643|ref|YP_001012963.1| - 1.6e-37 128.4 0.0 2.5e-37 127.8 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) PTH2 PF01981.16 gi|124027644|ref|YP_001012964.1| - 5.3e-45 152.5 0.0 5.9e-45 152.3 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF2396 PF09654.10 gi|124027644|ref|YP_001012964.1| - 0.017 15.3 0.0 0.019 15.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) DUF553 PF04473.12 gi|124027645|ref|YP_001012965.1| - 4.3e-34 117.3 0.0 2.7e-33 114.7 0.0 2.2 1 1 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.19 gi|124027645|ref|YP_001012965.1| - 1.2e-05 25.7 0.0 4e-05 24.0 0.0 1.9 1 0 0 1 1 1 1 Transglutaminase-like superfamily PLU-1 PF08429.11 gi|124027645|ref|YP_001012965.1| - 0.0059 15.8 4.5 0.0059 15.8 4.5 2.1 2 0 0 2 2 2 1 PLU-1-like protein MIT PF04212.18 gi|124027645|ref|YP_001012965.1| - 0.16 12.0 4.6 1.4 9.0 1.0 3.4 2 1 0 2 2 2 0 MIT (microtubule interacting and transport) domain FH2 PF02181.23 gi|124027645|ref|YP_001012965.1| - 0.31 10.1 1.8 0.31 10.1 0.4 1.7 2 0 0 2 2 2 0 Formin Homology 2 Domain ALIX_LYPXL_bnd PF13949.6 gi|124027645|ref|YP_001012965.1| - 3.8 6.7 9.8 0.36 10.1 0.9 2.5 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV DUF1464 PF07318.12 gi|124027646|ref|YP_001012966.1| - 5.1e-130 433.4 0.6 5.8e-130 433.2 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) PALP PF00291.25 gi|124027647|ref|YP_001012967.1| - 1.9e-65 221.2 0.2 2.4e-65 220.9 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-C4_Topoisom PF01396.19 gi|124027647|ref|YP_001012967.1| - 0.12 12.2 3.4 0.2 11.5 0.5 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Rubredoxin PF00301.20 gi|124027647|ref|YP_001012967.1| - 3.5 7.7 6.5 10 6.2 0.8 2.4 2 0 0 2 2 2 0 Rubredoxin Rubredoxin_2 PF18073.1 gi|124027647|ref|YP_001012967.1| - 4 7.2 11.9 26 4.7 12.1 2.1 1 1 1 2 2 2 0 Rubredoxin metal binding domain Sua5_yciO_yrdC PF01300.18 gi|124027648|ref|YP_001012968.1| - 4.3e-55 186.0 0.0 4.9e-55 185.8 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Thioredoxin PF00085.20 gi|124027649|ref|YP_001012969.1| - 5e-11 42.5 0.0 6.9e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|124027649|ref|YP_001012969.1| - 3.4e-05 24.0 1.0 5.2e-05 23.4 0.2 1.7 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|124027649|ref|YP_001012969.1| - 8.4e-05 22.5 0.1 0.00014 21.8 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|124027649|ref|YP_001012969.1| - 0.00022 21.6 0.7 0.0022 18.4 0.7 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|124027649|ref|YP_001012969.1| - 0.00027 21.1 0.5 0.00072 19.7 0.5 1.7 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|124027649|ref|YP_001012969.1| - 0.024 15.0 0.0 0.066 13.5 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin-like DIM1 PF02966.16 gi|124027649|ref|YP_001012969.1| - 0.075 12.8 0.0 0.087 12.6 0.0 1.3 1 0 0 1 1 1 0 Mitosis protein DIM1 Thioredoxin_9 PF14595.6 gi|124027649|ref|YP_001012969.1| - 0.13 12.1 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin LysE PF01810.18 gi|124027650|ref|YP_001012970.1| - 2.2e-07 30.5 20.2 3.9e-07 29.7 20.2 1.4 1 1 0 1 1 1 1 LysE type translocator Peptidase_M48 PF01435.18 gi|124027651|ref|YP_001012971.1| - 4.7e-40 137.5 0.0 7.8e-40 136.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Phage_holin_3_6 PF07332.11 gi|124027651|ref|YP_001012971.1| - 0.0053 16.8 1.1 0.0053 16.8 1.1 3.4 2 2 2 4 4 4 1 Putative Actinobacterial Holin-X, holin superfamily III Peptidase_M56 PF05569.11 gi|124027651|ref|YP_001012971.1| - 0.047 12.9 0.0 0.11 11.7 0.0 1.7 1 0 0 1 1 1 0 BlaR1 peptidase M56 UBA_6 PF18039.1 gi|124027652|ref|YP_001012972.1| - 0.021 14.7 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain Tail_P2_I PF09684.10 gi|124027652|ref|YP_001012972.1| - 0.13 12.2 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Phage tail protein (Tail_P2_I) HD PF01966.22 gi|124027653|ref|YP_001012973.1| - 5.6e-07 29.8 1.8 1.3e-06 28.7 0.5 2.4 2 1 0 2 2 2 1 HD domain Ribosomal_S26e PF01283.19 gi|124027654|ref|YP_001012974.1| - 2.1e-25 89.2 2.3 2.5e-25 89.0 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|124027654|ref|YP_001012974.1| - 0.00022 21.3 0.9 0.0072 16.5 0.3 2.7 3 0 0 3 3 3 1 C4-type zinc ribbon domain Sgf11 PF08209.11 gi|124027654|ref|YP_001012974.1| - 0.14 11.7 0.2 0.14 11.7 0.2 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF35_N PF12172.8 gi|124027654|ref|YP_001012974.1| - 0.16 11.9 0.5 0.16 11.9 0.5 1.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2HC_2 PF13913.6 gi|124027654|ref|YP_001012974.1| - 0.2 11.6 0.3 0.2 11.6 0.3 2.2 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Auto_anti-p27 PF06677.12 gi|124027654|ref|YP_001012974.1| - 0.25 11.5 5.0 0.4 10.9 0.6 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Methyltrn_RNA_2 PF04013.12 gi|124027655|ref|YP_001012975.1| - 3.9e-05 23.4 0.0 6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase RHH_1 PF01402.21 gi|124027656|ref|YP_001012976.1| - 1.8e-05 24.5 1.5 2.3e-05 24.1 1.5 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|124027656|ref|YP_001012976.1| - 0.0046 16.9 1.0 0.0065 16.4 1.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_4 PF13467.6 gi|124027656|ref|YP_001012976.1| - 0.016 15.0 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix domain FCH PF00611.23 gi|124027656|ref|YP_001012976.1| - 0.023 15.0 0.0 0.03 14.6 0.0 1.2 1 0 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain PSK_trans_fac PF07704.11 gi|124027656|ref|YP_001012976.1| - 0.098 13.4 0.1 0.11 13.2 0.1 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor tRNA-synt_2b PF00587.25 gi|124027657|ref|YP_001012977.1| - 2.1e-23 83.2 0.0 4.2e-23 82.2 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|124027657|ref|YP_001012977.1| - 1.1e-16 60.7 1.7 2.1e-16 59.8 1.0 1.9 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|124027657|ref|YP_001012977.1| - 0.076 12.1 0.5 0.58 9.2 0.5 2.0 1 1 0 1 1 1 0 tRNA synthetases class II (D, K and N) TMP-TENI PF02581.17 gi|124027657|ref|YP_001012977.1| - 0.12 11.6 0.0 3.2 7.0 0.0 2.7 2 1 1 3 3 3 0 Thiamine monophosphate synthase DUF2007 PF09413.10 gi|124027657|ref|YP_001012977.1| - 0.13 12.4 0.0 6.6 7.0 0.0 2.6 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein ATP-synt_C PF00137.21 gi|124027658|ref|YP_001012978.1| - 2e-16 60.0 15.2 2e-16 60.0 15.2 2.0 2 1 0 2 2 2 1 ATP synthase subunit C Abhydrolase_9_N PF15420.6 gi|124027658|ref|YP_001012978.1| - 0.24 11.4 8.9 0.33 10.9 8.9 1.3 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus tRNA_deacylase PF04414.12 gi|124027659|ref|YP_001012979.1| - 3.4e-60 203.1 0.0 3.9e-60 202.9 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase ATP-synt_D PF01813.17 gi|124027660|ref|YP_001012980.1| - 7.6e-39 133.6 10.1 8.6e-39 133.4 10.1 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DASH_Duo1 PF08651.10 gi|124027660|ref|YP_001012980.1| - 0.048 13.4 1.7 0.87 9.4 0.1 2.7 3 1 0 3 3 3 0 DASH complex subunit Duo1 ATP-synt_ab PF00006.25 gi|124027661|ref|YP_001012981.1| - 3.6e-68 229.4 0.0 5.1e-68 228.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|124027661|ref|YP_001012981.1| - 3e-12 46.9 1.5 6.2e-12 45.9 1.5 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|124027661|ref|YP_001012981.1| - 0.19 11.9 2.1 0.47 10.6 2.1 1.7 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_ab PF00006.25 gi|124027662|ref|YP_001012982.1| - 4.9e-92 307.4 0.0 6.5e-92 307.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|124027662|ref|YP_001012982.1| - 5.2e-48 161.9 0.2 1.1e-47 160.8 0.1 1.6 2 0 0 2 2 2 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|124027662|ref|YP_001012982.1| - 2e-13 50.6 3.7 2e-13 50.6 3.7 2.5 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|124027662|ref|YP_001012982.1| - 0.0018 18.6 0.6 0.019 15.2 0.0 2.5 2 1 1 3 3 3 1 AAA domain AAA_6 PF12774.7 gi|124027662|ref|YP_001012982.1| - 0.057 12.4 0.1 0.091 11.7 0.1 1.2 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_16 PF13191.6 gi|124027662|ref|YP_001012982.1| - 0.081 13.3 1.0 7 7.0 0.1 2.9 2 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|124027662|ref|YP_001012982.1| - 0.88 10.0 4.1 0.55 10.7 0.7 2.0 2 0 0 2 2 2 0 AAA domain vATP-synt_E PF01991.18 gi|124027663|ref|YP_001012983.1| - 9.8e-09 34.9 8.5 1.4e-08 34.4 8.5 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit FliH PF02108.16 gi|124027663|ref|YP_001012983.1| - 0.00032 20.8 3.0 0.28 11.2 0.2 2.3 1 1 1 2 2 2 2 Flagellar assembly protein FliH DUF1874 PF08960.10 gi|124027663|ref|YP_001012983.1| - 0.0066 16.6 0.1 0.014 15.5 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1874) Nexin_C PF08628.12 gi|124027663|ref|YP_001012983.1| - 0.018 15.6 0.9 0.046 14.3 0.9 1.6 1 1 0 1 1 1 0 Sorting nexin C terminal Serine_rich PF08824.10 gi|124027663|ref|YP_001012983.1| - 0.031 14.3 1.3 0.08 12.9 0.5 1.9 1 1 1 2 2 2 0 Serine rich protein interaction domain OmpH PF03938.14 gi|124027663|ref|YP_001012983.1| - 0.038 14.3 4.0 0.058 13.7 4.0 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Imm49 PF15575.6 gi|124027663|ref|YP_001012983.1| - 0.08 12.7 3.1 0.62 9.8 3.2 2.2 1 1 0 1 1 1 0 Immunity protein 49 CBFD_NFYB_HMF PF00808.23 gi|124027663|ref|YP_001012983.1| - 0.13 12.6 2.2 1.2 9.5 0.0 2.8 2 2 0 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Sec15 PF04091.12 gi|124027663|ref|YP_001012983.1| - 0.21 10.9 1.1 0.31 10.4 1.1 1.2 1 0 0 1 1 1 0 Exocyst complex subunit Sec15-like DUF1451 PF07295.11 gi|124027663|ref|YP_001012983.1| - 0.38 10.8 4.4 0.56 10.2 4.4 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain PIG-S PF10510.9 gi|124027663|ref|YP_001012983.1| - 0.78 8.5 4.0 5.8 5.6 2.4 2.0 1 1 1 2 2 2 0 Phosphatidylinositol-glycan biosynthesis class S protein DUF1690 PF07956.11 gi|124027663|ref|YP_001012983.1| - 1.2 9.5 9.4 1.8 9.0 9.0 1.4 1 1 0 1 1 1 0 Protein of Unknown function (DUF1690) dCache_2 PF08269.11 gi|124027663|ref|YP_001012983.1| - 3 6.9 6.7 4.6 6.3 6.6 1.4 1 1 0 1 1 1 0 Cache domain CorA PF01544.18 gi|124027663|ref|YP_001012983.1| - 3.1 7.1 6.3 5 6.4 6.3 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DNA_primase_lrg PF04104.14 gi|124027663|ref|YP_001012983.1| - 3.4 7.0 4.1 4.8 6.5 3.8 1.4 1 1 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit ATP-synt_F PF01990.17 gi|124027664|ref|YP_001012984.1| - 8.6e-13 48.4 0.0 9.6e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit CoA_transf_3 PF02515.17 gi|124027664|ref|YP_001012984.1| - 0.18 10.9 0.0 0.21 10.6 0.0 1.1 1 0 0 1 1 1 0 CoA-transferase family III V_ATPase_I PF01496.19 gi|124027665|ref|YP_001012985.1| - 4.8e-25 87.7 3.1 1e-11 43.6 0.0 3.5 4 0 0 4 4 4 2 V-type ATPase 116kDa subunit family DegS PF05384.11 gi|124027665|ref|YP_001012985.1| - 0.035 13.6 0.5 0.7 9.4 0.0 2.6 2 1 1 3 3 3 0 Sensor protein DegS ICL PF00463.21 gi|124027665|ref|YP_001012985.1| - 0.13 10.7 0.0 0.2 10.1 0.0 1.2 1 0 0 1 1 1 0 Isocitrate lyase family Uds1 PF15456.6 gi|124027665|ref|YP_001012985.1| - 0.14 12.3 3.8 12 6.1 1.7 2.7 2 1 0 2 2 2 0 Up-regulated During Septation AGOG PF09171.10 gi|124027666|ref|YP_001012986.1| - 0.00019 20.9 0.2 0.00028 20.3 0.2 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase SAT PF16073.5 gi|124027666|ref|YP_001012986.1| - 0.22 11.2 0.0 0.38 10.4 0.0 1.3 1 0 0 1 1 1 0 Starter unit:ACP transacylase in aflatoxin biosynthesis DUF401 PF04165.12 gi|124027667|ref|YP_001012987.1| - 2.2e-52 178.7 18.0 2.8e-52 178.4 18.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) p12I PF12233.8 gi|124027667|ref|YP_001012987.1| - 1.4 9.5 13.1 3.2 8.3 2.4 2.7 1 1 1 2 2 2 0 Human adult T cell leukemia/lymphoma virus protein MFS_1 PF07690.16 gi|124027668|ref|YP_001012988.1| - 1.1e-35 123.2 54.7 2.2e-25 89.3 24.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|124027668|ref|YP_001012988.1| - 1.2e-07 30.9 15.5 4.4e-05 22.5 0.3 2.3 1 1 0 2 2 2 2 MFS_1 like family SAT PF16073.5 gi|124027668|ref|YP_001012988.1| - 0.022 14.5 0.3 0.022 14.5 0.3 1.7 2 0 0 2 2 2 0 Starter unit:ACP transacylase in aflatoxin biosynthesis Aldolase_II PF00596.21 gi|124027669|ref|YP_001012989.1| - 1.8e-43 148.7 0.0 2e-43 148.5 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Zn-ribbon_8 PF09723.10 gi|124027670|ref|YP_001012990.1| - 0.0049 17.0 1.3 0.081 13.0 1.3 2.2 1 1 0 1 1 1 1 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|124027670|ref|YP_001012990.1| - 0.013 15.2 5.0 0.26 11.0 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-Sec23_Sec24 PF04810.15 gi|124027670|ref|YP_001012990.1| - 0.015 15.4 3.3 0.11 12.5 3.3 2.0 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger Nudix_N_2 PF14803.6 gi|124027670|ref|YP_001012990.1| - 0.059 13.3 1.9 3.5 7.6 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-IS66 PF13005.7 gi|124027670|ref|YP_001012990.1| - 0.089 13.2 1.0 7.1 7.1 0.0 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.6 gi|124027670|ref|YP_001012990.1| - 0.11 12.5 0.1 0.34 10.9 0.0 1.8 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 C1_2 PF03107.16 gi|124027670|ref|YP_001012990.1| - 0.11 12.8 0.5 0.38 11.1 0.1 1.9 2 0 0 2 2 2 0 C1 domain zinc_ribbon_2 PF13240.6 gi|124027670|ref|YP_001012990.1| - 0.13 12.0 4.1 1.6 8.6 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|124027670|ref|YP_001012990.1| - 0.25 10.8 2.8 2.7 7.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|124027670|ref|YP_001012990.1| - 0.43 10.6 0.1 0.43 10.6 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.9 gi|124027670|ref|YP_001012990.1| - 1.8 8.7 4.7 16 5.7 1.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Desulfoferrod_N PF06397.12 gi|124027670|ref|YP_001012990.1| - 2.6 7.7 5.5 0.38 10.4 0.7 1.9 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain AIRS PF00586.24 gi|124027671|ref|YP_001012991.1| - 9.8e-18 64.6 1.0 2.4e-17 63.4 1.0 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Inositol_P PF00459.25 gi|124027672|ref|YP_001012992.1| - 3.2e-22 79.3 0.1 3.8e-22 79.1 0.1 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|124027672|ref|YP_001012992.1| - 0.0028 17.1 0.0 0.0045 16.5 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain DUF2797 PF10977.8 gi|124027673|ref|YP_001012993.1| - 0.089 12.7 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2797) zf-C3Hc3H PF13891.6 gi|124027673|ref|YP_001012993.1| - 0.23 11.8 0.1 0.46 10.9 0.1 1.4 1 0 0 1 1 1 0 Potential DNA-binding domain CdvA PF18822.1 gi|124027674|ref|YP_001012994.1| - 7.9e-36 122.6 11.9 1.3e-35 121.9 11.9 1.3 1 0 0 1 1 1 1 CdvA-like coiled-coil domain PRC PF05239.16 gi|124027674|ref|YP_001012994.1| - 0.0023 18.0 2.2 0.0039 17.2 2.2 1.3 1 0 0 1 1 1 1 PRC-barrel domain YppF PF14178.6 gi|124027674|ref|YP_001012994.1| - 0.032 14.1 0.4 6.2 6.8 0.1 2.5 2 0 0 2 2 2 0 YppF-like protein DUF883 PF05957.13 gi|124027674|ref|YP_001012994.1| - 0.095 13.3 5.2 0.099 13.3 0.4 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) HHH_8 PF14716.6 gi|124027674|ref|YP_001012994.1| - 0.33 11.4 3.1 3.5 8.1 0.2 3.1 2 1 0 3 3 3 0 Helix-hairpin-helix domain EST1 PF10374.9 gi|124027674|ref|YP_001012994.1| - 0.37 11.4 4.9 1.2 9.7 4.9 1.8 1 1 0 1 1 1 0 Telomerase activating protein Est1 Fmp27_WPPW PF10359.9 gi|124027674|ref|YP_001012994.1| - 0.53 9.1 4.5 0.67 8.7 4.5 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF4407 PF14362.6 gi|124027674|ref|YP_001012994.1| - 0.56 9.5 5.9 0.77 9.1 5.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Fib_alpha PF08702.10 gi|124027674|ref|YP_001012994.1| - 0.58 10.3 3.3 1.6 8.9 2.9 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF2203 PF09969.9 gi|124027674|ref|YP_001012994.1| - 0.89 10.3 3.4 0.98 10.2 1.3 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) YtxH PF12732.7 gi|124027674|ref|YP_001012994.1| - 2.9 8.5 6.5 80 3.9 6.5 2.5 1 1 0 1 1 1 0 YtxH-like protein HAUS-augmin3 PF14932.6 gi|124027674|ref|YP_001012994.1| - 5.6 6.5 8.1 1.3 8.5 2.6 1.9 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 HemN_C PF06969.16 gi|124027675|ref|YP_001012995.1| - 0.0032 17.5 0.1 0.008 16.2 0.1 1.7 1 0 0 1 1 1 1 HemN C-terminal domain Piwi PF02171.17 gi|124027675|ref|YP_001012995.1| - 0.041 13.1 0.5 0.066 12.4 0.5 1.3 1 0 0 1 1 1 0 Piwi domain HTH_36 PF13730.6 gi|124027675|ref|YP_001012995.1| - 0.044 13.8 0.0 0.085 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|124027675|ref|YP_001012995.1| - 0.091 12.7 0.1 0.33 10.9 0.0 2.0 2 0 0 2 2 2 0 MarR family DUF4106 PF13388.6 gi|124027675|ref|YP_001012995.1| - 0.16 11.1 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) Aldo_ket_red PF00248.21 gi|124027676|ref|YP_001012996.1| - 1.8e-50 171.8 0.0 1.4e-48 165.6 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family AAA PF00004.29 gi|124027677|ref|YP_001012997.1| - 7.9e-39 133.1 0.0 1.9e-38 131.9 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|124027677|ref|YP_001012997.1| - 2.1e-13 49.8 1.0 1.5e-12 47.1 0.0 2.8 3 0 0 3 3 3 1 AAA+ lid domain MIT PF04212.18 gi|124027677|ref|YP_001012997.1| - 1.1e-10 41.4 1.4 2.9e-10 40.1 1.4 1.7 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain Vps4_C PF09336.10 gi|124027677|ref|YP_001012997.1| - 7.3e-08 32.3 0.0 2.7e-07 30.5 0.0 1.9 2 0 0 2 2 1 1 Vps4 C terminal oligomerisation domain AAA_2 PF07724.14 gi|124027677|ref|YP_001012997.1| - 1.1e-06 28.9 0.0 1.9e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|124027677|ref|YP_001012997.1| - 1.9e-06 28.2 0.0 0.00017 21.9 0.0 2.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|124027677|ref|YP_001012997.1| - 7.7e-06 26.0 0.1 8.8e-05 22.5 0.1 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|124027677|ref|YP_001012997.1| - 2.2e-05 24.3 0.0 0.00017 21.4 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|124027677|ref|YP_001012997.1| - 3.1e-05 24.0 0.0 5.9e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|124027677|ref|YP_001012997.1| - 4.2e-05 24.0 0.1 0.013 15.9 0.0 2.7 1 1 2 3 3 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|124027677|ref|YP_001012997.1| - 0.00015 21.4 0.2 0.057 13.0 0.1 2.6 1 1 1 2 2 2 1 AAA domain TPR_11 PF13414.6 gi|124027677|ref|YP_001012997.1| - 0.0015 18.1 2.5 0.02 14.6 2.5 2.3 1 1 0 1 1 1 1 TPR repeat AAA_24 PF13479.6 gi|124027677|ref|YP_001012997.1| - 0.0017 18.1 0.0 0.0074 16.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|124027677|ref|YP_001012997.1| - 0.0018 18.0 0.0 0.0039 17.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|124027677|ref|YP_001012997.1| - 0.0025 18.0 0.0 0.011 15.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain TPR_14 PF13428.6 gi|124027677|ref|YP_001012997.1| - 0.0027 18.4 0.2 0.026 15.3 0.0 2.9 2 1 1 3 3 1 1 Tetratricopeptide repeat Mg_chelatase PF01078.21 gi|124027677|ref|YP_001012997.1| - 0.0029 17.0 0.1 0.0067 15.8 0.1 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|124027677|ref|YP_001012997.1| - 0.0053 16.0 0.0 0.0099 15.1 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain ATPase_2 PF01637.18 gi|124027677|ref|YP_001012997.1| - 0.0054 16.7 0.0 0.69 9.8 0.0 2.4 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea TPR_8 PF13181.6 gi|124027677|ref|YP_001012997.1| - 0.0092 16.1 1.1 0.27 11.5 0.2 3.0 2 0 0 2 2 2 1 Tetratricopeptide repeat AAA_18 PF13238.6 gi|124027677|ref|YP_001012997.1| - 0.015 15.8 0.0 0.05 14.2 0.0 1.9 2 0 0 2 2 1 0 AAA domain ATPase PF06745.13 gi|124027677|ref|YP_001012997.1| - 0.016 14.5 0.3 4.1 6.7 0.0 2.6 2 1 1 3 3 3 0 KaiC Viral_helicase1 PF01443.18 gi|124027677|ref|YP_001012997.1| - 0.021 14.5 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 gi|124027677|ref|YP_001012997.1| - 0.027 15.0 0.0 0.072 13.6 0.0 1.8 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|124027677|ref|YP_001012997.1| - 0.028 14.8 0.0 0.073 13.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|124027677|ref|YP_001012997.1| - 0.034 14.1 0.0 0.072 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TPR_12 PF13424.6 gi|124027677|ref|YP_001012997.1| - 0.039 14.3 1.3 0.18 12.1 0.6 2.4 3 0 0 3 3 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|124027677|ref|YP_001012997.1| - 0.04 14.5 0.1 0.14 12.9 0.1 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat AAA_28 PF13521.6 gi|124027677|ref|YP_001012997.1| - 0.04 14.1 0.0 0.13 12.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain TPR_2 PF07719.17 gi|124027677|ref|YP_001012997.1| - 0.054 13.6 3.5 0.23 11.7 0.2 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat Zeta_toxin PF06414.12 gi|124027677|ref|YP_001012997.1| - 0.085 12.1 0.0 0.29 10.4 0.0 1.9 1 0 0 1 1 1 0 Zeta toxin AAA_7 PF12775.7 gi|124027677|ref|YP_001012997.1| - 0.092 12.3 0.0 0.3 10.6 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|124027677|ref|YP_001012997.1| - 0.094 11.9 0.0 0.21 10.8 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain TPR_1 PF00515.28 gi|124027677|ref|YP_001012997.1| - 0.1 12.5 0.4 0.1 12.5 0.4 2.8 4 0 0 4 4 3 0 Tetratricopeptide repeat Bac_DnaA PF00308.18 gi|124027677|ref|YP_001012997.1| - 0.14 12.0 0.0 0.34 10.7 0.0 1.6 1 1 0 1 1 1 0 Bacterial dnaA protein HGTP_anticodon PF03129.20 gi|124027678|ref|YP_001012998.1| - 0.22 11.7 0.0 0.48 10.6 0.0 1.5 1 0 0 1 1 1 0 Anticodon binding domain BPL_LplA_LipB PF03099.19 gi|124027679|ref|YP_001012999.1| - 1.7e-16 60.3 0.0 2.4e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Pyr_redox_2 PF07992.14 gi|124027680|ref|YP_001013000.1| - 1.1e-54 185.7 0.1 1.4e-54 185.4 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|124027680|ref|YP_001013000.1| - 6.1e-23 81.2 4.5 8.2e-18 64.7 0.7 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|124027680|ref|YP_001013000.1| - 3.5e-15 56.0 0.0 5.8e-12 45.5 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|124027680|ref|YP_001013000.1| - 4.7e-12 46.1 0.0 2.6e-11 43.8 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.14 gi|124027680|ref|YP_001013000.1| - 1.3e-10 40.5 0.4 0.0073 15.1 0.0 4.0 3 1 1 4 4 4 3 HI0933-like protein DAO PF01266.24 gi|124027680|ref|YP_001013000.1| - 2.3e-09 37.3 9.1 0.03 13.9 0.1 4.2 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|124027680|ref|YP_001013000.1| - 2.1e-07 31.1 1.4 0.16 11.9 0.0 4.1 3 1 1 4 4 4 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|124027680|ref|YP_001013000.1| - 5.1e-07 29.8 0.5 0.00019 21.6 0.1 3.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|124027680|ref|YP_001013000.1| - 1.2e-06 27.9 2.9 0.00051 19.2 0.1 3.4 4 1 1 5 5 5 2 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|124027680|ref|YP_001013000.1| - 5.1e-06 25.6 3.6 0.034 13.0 0.1 3.6 4 0 0 4 4 4 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|124027680|ref|YP_001013000.1| - 5.6e-06 25.7 4.2 0.043 12.9 0.1 3.4 4 0 0 4 4 4 2 FAD binding domain Lycopene_cycl PF05834.12 gi|124027680|ref|YP_001013000.1| - 6.2e-05 22.2 4.4 0.57 9.2 0.0 4.0 3 1 1 4 4 4 2 Lycopene cyclase protein K_oxygenase PF13434.6 gi|124027680|ref|YP_001013000.1| - 8.1e-05 21.9 0.0 0.0003 20.1 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|124027680|ref|YP_001013000.1| - 8.4e-05 22.0 2.3 0.057 12.7 0.2 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|124027680|ref|YP_001013000.1| - 0.00059 20.2 0.4 0.19 12.2 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|124027680|ref|YP_001013000.1| - 0.0028 17.1 7.6 0.29 10.4 0.7 3.6 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|124027680|ref|YP_001013000.1| - 0.0063 15.8 1.6 2.4 7.3 0.2 2.9 3 0 0 3 3 3 1 FAD binding domain TrkA_N PF02254.18 gi|124027680|ref|YP_001013000.1| - 0.021 15.1 0.4 3.2 8.0 0.1 3.0 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.18 gi|124027680|ref|YP_001013000.1| - 0.032 14.1 0.8 0.2 11.5 0.1 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|124027680|ref|YP_001013000.1| - 0.035 13.7 0.2 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 gi|124027680|ref|YP_001013000.1| - 0.092 12.8 0.0 8.9 6.4 0.1 2.9 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|124027680|ref|YP_001013000.1| - 0.096 12.0 0.0 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 ThiF family Thi4 PF01946.17 gi|124027680|ref|YP_001013000.1| - 0.27 10.4 2.4 3.1 7.0 0.1 2.8 3 0 0 3 3 3 0 Thi4 family PAP2 PF01569.21 gi|124027681|ref|YP_001013001.1| - 2.2e-15 56.6 10.3 2.2e-15 56.6 10.3 3.0 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|124027681|ref|YP_001013001.1| - 3.7e-11 43.1 11.0 3.7e-11 43.1 11.0 2.0 1 1 1 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|124027681|ref|YP_001013001.1| - 2.8e-05 24.6 4.5 9.4e-05 22.9 4.5 1.9 1 0 0 1 1 1 1 PAP2 superfamily C-terminal Kei1 PF08552.11 gi|124027681|ref|YP_001013001.1| - 0.044 13.7 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Inositolphosphorylceramide synthase subunit Kei1 Wzy_C PF04932.15 gi|124027681|ref|YP_001013001.1| - 2.9 7.5 12.7 19 4.8 12.7 2.5 1 1 0 1 1 1 0 O-Antigen ligase DUF4346 PF14251.6 gi|124027682|ref|YP_001013002.1| - 0.011 15.8 0.1 0.022 14.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4346) GDPD PF03009.17 gi|124027683|ref|YP_001013003.1| - 8.4e-31 107.6 0.0 2.2e-28 99.7 0.0 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|124027683|ref|YP_001013003.1| - 3.5e-05 24.1 0.3 0.001 19.4 0.3 2.2 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family ArsA_ATPase PF02374.15 gi|124027684|ref|YP_001013004.1| - 1e-25 90.5 0.0 1.2e-25 90.4 0.0 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|124027684|ref|YP_001013004.1| - 0.013 14.9 0.0 4.8 6.6 0.0 2.1 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|124027685|ref|YP_001013005.1| - 1.5e-12 47.3 0.0 1.6e-12 47.3 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|124027685|ref|YP_001013005.1| - 1.3e-10 41.5 0.0 1.5e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|124027685|ref|YP_001013005.1| - 2e-10 40.8 0.0 2.1e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|124027685|ref|YP_001013005.1| - 4.3e-08 32.9 0.0 4.3e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase SRP54 PF00448.22 gi|124027685|ref|YP_001013005.1| - 3.7e-05 23.5 0.1 4.8e-05 23.1 0.1 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|124027685|ref|YP_001013005.1| - 0.00014 22.3 0.0 0.00016 22.1 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain MeaB PF03308.16 gi|124027685|ref|YP_001013005.1| - 0.00017 20.7 0.0 0.00019 20.5 0.0 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|124027685|ref|YP_001013005.1| - 0.00019 21.3 0.0 0.0002 21.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|124027685|ref|YP_001013005.1| - 0.00066 20.2 0.0 0.00075 20.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|124027685|ref|YP_001013005.1| - 0.0016 18.0 0.1 0.002 17.6 0.1 1.1 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|124027685|ref|YP_001013005.1| - 0.0018 17.6 0.0 0.0018 17.6 0.0 1.1 1 0 0 1 1 1 1 ATPase MipZ NTPase_1 PF03266.15 gi|124027685|ref|YP_001013005.1| - 0.0021 18.0 0.7 0.003 17.5 0.7 1.2 1 0 0 1 1 1 1 NTPase AAA_25 PF13481.6 gi|124027685|ref|YP_001013005.1| - 0.0021 17.6 0.2 0.0027 17.3 0.2 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|124027685|ref|YP_001013005.1| - 0.0027 18.0 0.1 0.0039 17.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|124027685|ref|YP_001013005.1| - 0.0059 15.9 0.0 0.0059 15.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.15 gi|124027685|ref|YP_001013005.1| - 0.0078 15.6 0.0 0.0088 15.4 0.0 1.1 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_30 PF13604.6 gi|124027685|ref|YP_001013005.1| - 0.0093 15.7 0.0 0.011 15.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|124027685|ref|YP_001013005.1| - 0.017 14.6 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ IstB_IS21 PF01695.17 gi|124027685|ref|YP_001013005.1| - 0.024 14.4 0.0 0.025 14.3 0.0 1.1 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|124027685|ref|YP_001013005.1| - 0.025 13.8 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin ATPase PF06745.13 gi|124027685|ref|YP_001013005.1| - 0.039 13.3 0.0 0.048 13.0 0.0 1.1 1 0 0 1 1 1 0 KaiC NB-ARC PF00931.22 gi|124027685|ref|YP_001013005.1| - 0.041 13.1 0.1 0.055 12.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain PhoH PF02562.16 gi|124027685|ref|YP_001013005.1| - 0.046 13.2 0.0 0.05 13.0 0.0 1.1 1 0 0 1 1 1 0 PhoH-like protein AAA_14 PF13173.6 gi|124027685|ref|YP_001013005.1| - 0.047 13.7 0.0 0.056 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|124027685|ref|YP_001013005.1| - 0.048 12.9 0.0 0.064 12.5 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain APS_kinase PF01583.20 gi|124027685|ref|YP_001013005.1| - 0.05 13.5 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase RsgA_GTPase PF03193.16 gi|124027685|ref|YP_001013005.1| - 0.05 13.5 0.1 0.073 13.0 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|124027685|ref|YP_001013005.1| - 0.054 13.4 1.0 0.07 13.0 0.3 1.6 2 0 0 2 2 1 0 NACHT domain ABC_tran PF00005.27 gi|124027685|ref|YP_001013005.1| - 0.056 14.0 0.0 0.06 13.9 0.0 1.1 1 0 0 1 1 1 0 ABC transporter PIF1 PF05970.14 gi|124027685|ref|YP_001013005.1| - 0.11 11.7 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase AAA PF00004.29 gi|124027685|ref|YP_001013005.1| - 0.16 12.4 0.1 0.17 12.3 0.1 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|124027685|ref|YP_001013005.1| - 0.19 11.6 0.1 0.25 11.2 0.1 1.1 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_26 PF13500.6 gi|124027685|ref|YP_001013005.1| - 0.2 11.4 0.3 0.28 11.0 0.3 1.2 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|124027685|ref|YP_001013005.1| - 0.21 11.0 0.0 0.23 10.8 0.0 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ResIII PF04851.15 gi|124027685|ref|YP_001013005.1| - 0.22 11.5 0.0 0.26 11.3 0.0 1.1 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF853 PF05872.12 gi|124027685|ref|YP_001013005.1| - 0.22 10.0 0.0 0.26 9.8 0.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_11 PF13086.6 gi|124027685|ref|YP_001013005.1| - 0.28 10.9 0.0 0.32 10.7 0.0 1.0 1 0 0 1 1 1 0 AAA domain CstA PF02554.14 gi|124027687|ref|YP_001013007.1| - 1.7e-103 346.4 30.1 1.7e-103 346.4 30.1 2.0 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|124027687|ref|YP_001013007.1| - 3.9e-29 101.4 10.0 3.9e-29 101.4 10.0 3.6 3 0 0 3 3 3 1 5TM C-terminal transporter carbon starvation CstA MotA_ExbB PF01618.16 gi|124027687|ref|YP_001013007.1| - 0.024 14.4 0.3 0.71 9.6 0.0 2.8 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family DUF373 PF04123.13 gi|124027688|ref|YP_001013008.1| - 0.19 11.1 0.5 0.19 11.2 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF2157 PF09925.9 gi|124027688|ref|YP_001013008.1| - 0.62 9.9 5.7 1.1 9.0 1.9 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) DUF3955 PF13127.6 gi|124027688|ref|YP_001013008.1| - 2.9 7.8 11.3 5.3 6.9 3.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) FtsL PF04999.13 gi|124027689|ref|YP_001013009.1| - 0.09 12.8 1.2 0.15 12.1 1.2 1.3 1 0 0 1 1 1 0 Cell division protein FtsL ABC_tran PF00005.27 gi|124027690|ref|YP_001013010.1| - 3.7e-08 34.0 0.1 5.6e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027690|ref|YP_001013010.1| - 2.1e-06 27.8 0.2 2.9e-06 27.3 0.2 1.2 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027690|ref|YP_001013010.1| - 0.036 13.5 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|124027690|ref|YP_001013010.1| - 0.047 13.9 0.2 1.2 9.4 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BAT PF15915.5 gi|124027690|ref|YP_001013010.1| - 0.063 13.2 0.2 0.21 11.5 0.1 1.8 2 0 0 2 2 2 0 GAF and HTH_10 associated domain PAP2_3 PF14378.6 gi|124027692|ref|YP_001013012.1| - 1.3e-30 106.6 18.1 2.3e-30 105.7 18.1 1.4 1 0 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 gi|124027692|ref|YP_001013012.1| - 2.1e-07 30.8 1.3 2.1e-07 30.8 1.3 2.3 2 0 0 2 2 2 2 PAP2 superfamily PAP2_C PF14360.6 gi|124027692|ref|YP_001013012.1| - 3.3 8.3 8.1 0.46 11.1 1.9 2.3 2 0 0 2 2 2 0 PAP2 superfamily C-terminal HHH_3 PF12836.7 gi|124027693|ref|YP_001013013.1| - 8.9e-08 32.3 0.0 1.8e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|124027693|ref|YP_001013013.1| - 0.00026 21.5 0.0 0.00066 20.2 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|124027693|ref|YP_001013013.1| - 0.00029 20.5 0.0 0.00082 19.1 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|124027693|ref|YP_001013013.1| - 0.0038 17.0 0.0 0.0083 15.9 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|124027693|ref|YP_001013013.1| - 0.0045 17.1 0.0 0.0084 16.2 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Radical_SAM PF04055.21 gi|124027693|ref|YP_001013013.1| - 0.0092 16.4 0.0 0.14 12.5 0.0 2.3 1 1 0 1 1 1 1 Radical SAM superfamily HHH_8 PF14716.6 gi|124027693|ref|YP_001013013.1| - 0.011 16.1 0.0 0.025 15.0 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain GHMP_kinases_C PF08544.13 gi|124027694|ref|YP_001013014.1| - 1.9e-10 41.0 0.1 2.1e-09 37.6 0.0 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|124027694|ref|YP_001013014.1| - 6.9e-10 39.0 3.0 1.4e-09 38.1 3.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Cys_Met_Meta_PP PF01053.20 gi|124027696|ref|YP_001013016.1| - 8.4e-120 399.8 0.0 9.5e-120 399.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|124027696|ref|YP_001013016.1| - 2.6e-06 26.7 0.0 4.3e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|124027696|ref|YP_001013016.1| - 4.5e-05 22.8 0.0 7.5e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|124027696|ref|YP_001013016.1| - 0.029 13.7 0.0 0.44 9.8 0.0 2.3 1 1 0 1 1 1 0 Beta-eliminating lyase DUF5591 PF17884.1 gi|124027697|ref|YP_001013017.1| - 1.1e-07 31.8 0.1 1.6e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) Cyclase PF04199.13 gi|124027698|ref|YP_001013018.1| - 3.5e-38 130.9 0.0 4.3e-38 130.6 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase DUF4131 PF13567.6 gi|124027699|ref|YP_001013019.1| - 3.7 7.2 7.5 5.8 6.5 0.3 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) DUF2306 PF10067.9 gi|124027699|ref|YP_001013019.1| - 5.8 7.1 12.2 0.27 11.4 3.4 2.4 3 0 0 3 3 3 0 Predicted membrane protein (DUF2306) ABC_tran PF00005.27 gi|124027700|ref|YP_001013020.1| - 2.4e-26 92.9 0.0 7.6e-26 91.3 0.0 1.8 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|124027700|ref|YP_001013020.1| - 7.2e-18 64.9 0.2 1.5e-17 63.9 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|124027700|ref|YP_001013020.1| - 6.4e-06 26.2 0.3 0.0019 18.1 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|124027700|ref|YP_001013020.1| - 0.0011 19.3 0.1 0.048 13.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|124027700|ref|YP_001013020.1| - 0.012 15.1 0.0 0.45 9.9 0.0 2.1 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|124027700|ref|YP_001013020.1| - 0.023 14.4 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Exog_C PF18026.1 gi|124027700|ref|YP_001013020.1| - 0.029 14.4 0.4 0.083 13.0 0.0 1.9 2 0 0 2 2 2 0 Endo/exonuclease (EXOG) C-terminal domain AAA_5 PF07728.14 gi|124027700|ref|YP_001013020.1| - 0.054 13.5 0.1 0.29 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|124027700|ref|YP_001013020.1| - 0.06 13.7 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.6 gi|124027700|ref|YP_001013020.1| - 0.083 13.3 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|124027700|ref|YP_001013020.1| - 0.14 12.1 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ATP-synt_ab PF00006.25 gi|124027700|ref|YP_001013020.1| - 0.18 11.4 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SBP_bac_5 PF00496.22 gi|124027701|ref|YP_001013021.1| - 4.1e-24 85.2 6.6 1.9e-15 56.8 0.0 3.5 3 1 0 3 3 3 3 Bacterial extracellular solute-binding proteins, family 5 Middle Baculo_PEP_C PF04513.12 gi|124027701|ref|YP_001013021.1| - 0.027 14.5 10.4 0.022 14.8 8.7 1.7 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Phasin PF05597.11 gi|124027701|ref|YP_001013021.1| - 0.059 13.4 0.7 0.13 12.3 0.7 1.5 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Prominin PF05478.11 gi|124027701|ref|YP_001013021.1| - 0.073 11.0 1.2 0.1 10.6 1.2 1.1 1 0 0 1 1 1 0 Prominin Sec5 PF15469.6 gi|124027701|ref|YP_001013021.1| - 0.11 12.3 0.2 0.29 10.9 0.0 1.8 2 0 0 2 2 2 0 Exocyst complex component Sec5 ApoLp-III PF07464.11 gi|124027701|ref|YP_001013021.1| - 0.82 9.8 10.9 0.69 10.0 6.8 2.6 3 0 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) tRNA_anti-codon PF01336.25 gi|124027704|ref|YP_001013024.1| - 9.7e-07 28.7 0.4 1.4e-06 28.1 0.4 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|124027704|ref|YP_001013024.1| - 0.15 12.0 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Replication protein A OB domain dCMP_cyt_deam_1 PF00383.23 gi|124027705|ref|YP_001013025.1| - 2.7e-15 56.1 0.1 3.4e-15 55.8 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|124027705|ref|YP_001013025.1| - 2.4e-10 40.8 0.2 8.9e-10 38.9 0.2 1.8 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|124027705|ref|YP_001013025.1| - 0.00037 20.1 2.1 0.25 10.9 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases FLgD_tudor PF13861.6 gi|124027705|ref|YP_001013025.1| - 0.27 11.5 1.0 0.43 10.9 0.4 1.6 2 0 0 2 2 2 0 FlgD Tudor-like domain GCV_T PF01571.21 gi|124027706|ref|YP_001013026.1| - 7.8e-81 271.2 0.0 9.3e-81 271.0 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|124027706|ref|YP_001013026.1| - 1.8e-21 75.9 0.4 3.9e-21 74.8 0.4 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain MlaD PF02470.20 gi|124027706|ref|YP_001013026.1| - 0.061 13.6 0.2 0.12 12.7 0.2 1.5 1 0 0 1 1 1 0 MlaD protein DUF1611 PF07755.11 gi|124027707|ref|YP_001013027.1| - 2.5e-59 199.9 0.0 3.5e-59 199.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|124027707|ref|YP_001013027.1| - 1.5e-34 118.0 0.3 9.5e-33 112.3 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF1611_N) Rossmann-like domain Mur_ligase PF01225.25 gi|124027707|ref|YP_001013027.1| - 0.12 12.7 0.6 1.7 9.1 0.0 2.7 2 1 1 3 3 3 0 Mur ligase family, catalytic domain GatB_N PF02934.15 gi|124027709|ref|YP_001013029.1| - 1.5e-102 342.7 0.0 1.9e-102 342.3 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|124027709|ref|YP_001013029.1| - 1.3e-37 129.0 0.0 2.3e-37 128.1 0.0 1.4 1 0 0 1 1 1 1 GatB domain HEM4 PF02602.15 gi|124027710|ref|YP_001013030.1| - 9.7e-37 126.5 0.8 1.1e-36 126.3 0.8 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD B12-binding PF02310.19 gi|124027710|ref|YP_001013030.1| - 0.056 13.5 0.1 0.98 9.5 0.0 2.3 1 1 1 2 2 2 0 B12 binding domain TP_methylase PF00590.20 gi|124027711|ref|YP_001013031.1| - 2.2e-51 174.9 2.0 2.5e-51 174.6 2.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|124027711|ref|YP_001013031.1| - 0.03 14.7 0.0 0.091 13.1 0.0 1.7 1 1 0 1 1 1 0 Radical SAM superfamily Porphobil_deam PF01379.20 gi|124027712|ref|YP_001013032.1| - 3.4e-68 229.2 0.0 4.6e-68 228.7 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|124027712|ref|YP_001013032.1| - 1.8e-16 60.3 0.0 3.1e-16 59.5 0.0 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_11 PF13531.6 gi|124027712|ref|YP_001013032.1| - 0.016 15.0 0.0 0.048 13.4 0.0 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein Aminotran_3 PF00202.21 gi|124027713|ref|YP_001013033.1| - 8.2e-73 245.4 0.1 1.1e-72 245.0 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|124027713|ref|YP_001013033.1| - 0.00019 20.7 0.0 0.00029 20.1 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|124027713|ref|YP_001013033.1| - 0.024 13.9 0.1 0.049 12.9 0.1 1.5 1 1 0 1 1 1 0 Beta-eliminating lyase APH PF01636.23 gi|124027714|ref|YP_001013034.1| - 3.3e-07 30.5 2.4 0.00014 21.9 0.1 2.9 2 1 1 3 3 3 2 Phosphotransferase enzyme family RPAP3_C PF13877.6 gi|124027714|ref|YP_001013034.1| - 0.16 12.6 0.0 0.43 11.1 0.0 1.8 1 1 0 1 1 1 0 Potential Monad-binding region of RPAP3 Hist_deacetyl PF00850.19 gi|124027715|ref|YP_001013035.1| - 2.4e-65 221.1 0.0 3.7e-65 220.4 0.0 1.3 1 1 0 1 1 1 1 Histone deacetylase domain GTP_EFTU PF00009.27 gi|124027716|ref|YP_001013036.1| - 1.3e-64 217.4 0.0 1.8e-64 216.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|124027716|ref|YP_001013036.1| - 1.8e-33 114.9 0.3 3.9e-32 110.6 0.0 3.0 2 1 1 3 3 3 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|124027716|ref|YP_001013036.1| - 3e-26 91.3 0.0 7.6e-26 90.0 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|124027716|ref|YP_001013036.1| - 1.6e-25 89.0 0.0 3.8e-25 87.8 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|124027716|ref|YP_001013036.1| - 2.2e-14 53.6 0.1 6.1e-14 52.2 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|124027716|ref|YP_001013036.1| - 4.7e-05 23.4 0.0 9.4e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase HIGH_NTase1_ass PF16581.5 gi|124027716|ref|YP_001013036.1| - 0.044 13.8 0.0 0.13 12.2 0.0 1.8 1 0 0 1 1 1 0 Cytidyltransferase-related C-terminal region Med22 PF06179.12 gi|124027716|ref|YP_001013036.1| - 0.1 12.8 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Surfeit locus protein 5 subunit 22 of Mediator complex ERCC4 PF02732.15 gi|124027717|ref|YP_001013037.1| - 9.7e-22 77.8 0.0 1.3e-21 77.4 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|124027717|ref|YP_001013037.1| - 6.2e-09 36.3 0.0 2.3e-07 31.3 0.0 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|124027717|ref|YP_001013037.1| - 4.9e-05 23.3 0.0 0.00023 21.2 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|124027717|ref|YP_001013037.1| - 0.0054 17.3 0.0 0.012 16.2 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.8 gi|124027717|ref|YP_001013037.1| - 0.0068 16.7 0.0 0.018 15.3 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif Rad10 PF03834.14 gi|124027717|ref|YP_001013037.1| - 0.072 13.1 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) HHH PF00633.23 gi|124027717|ref|YP_001013037.1| - 0.17 11.9 0.4 0.67 9.9 0.0 2.3 3 0 0 3 3 3 0 Helix-hairpin-helix motif Methyltr_RsmB-F PF01189.17 gi|124027719|ref|YP_001013039.1| - 1.2e-30 106.7 0.0 1.7e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_25 PF13649.6 gi|124027719|ref|YP_001013039.1| - 0.003 18.2 0.0 0.011 16.5 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|124027719|ref|YP_001013039.1| - 0.0078 15.8 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 gi|124027719|ref|YP_001013039.1| - 0.018 15.2 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltr_RsmF_N PF17125.5 gi|124027719|ref|YP_001013039.1| - 0.024 15.1 0.0 0.052 14.0 0.0 1.6 1 0 0 1 1 1 0 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_15 PF09445.10 gi|124027719|ref|YP_001013039.1| - 0.031 13.8 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.6 gi|124027719|ref|YP_001013039.1| - 0.049 13.4 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain GPP34 PF05719.11 gi|124027719|ref|YP_001013039.1| - 0.072 13.1 0.9 0.17 11.9 0.9 1.6 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) UPF0020 PF01170.18 gi|124027719|ref|YP_001013039.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|124027719|ref|YP_001013039.1| - 0.14 11.9 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RNase_HII PF01351.18 gi|124027720|ref|YP_001013040.1| - 3e-47 161.0 0.0 3.5e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII DsrH PF04077.12 gi|124027721|ref|YP_001013041.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 DsrH like protein Voltage_CLC PF00654.20 gi|124027722|ref|YP_001013042.1| - 9.2e-73 245.5 34.2 9.2e-73 245.5 34.2 1.7 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.28 gi|124027722|ref|YP_001013042.1| - 6.8e-05 23.2 0.4 0.00027 21.3 0.3 2.1 1 1 0 1 1 1 1 CBS domain CybS PF05328.12 gi|124027722|ref|YP_001013042.1| - 0.49 10.1 5.7 3.1 7.5 0.8 3.2 3 0 0 3 3 3 0 CybS, succinate dehydrogenase cytochrome B small subunit Adeno_E3_CR2 PF02439.15 gi|124027722|ref|YP_001013042.1| - 2.5 7.9 4.9 1.8 8.4 0.9 2.9 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 Lactamase_B_3 PF13483.6 gi|124027724|ref|YP_001013044.1| - 1.8e-33 115.8 0.0 2.1e-33 115.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|124027724|ref|YP_001013044.1| - 1.2e-12 47.8 2.2 1.5e-07 31.2 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|124027724|ref|YP_001013044.1| - 0.0046 17.0 3.0 0.0071 16.4 1.5 1.9 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily ABC_tran PF00005.27 gi|124027725|ref|YP_001013045.1| - 7.4e-23 81.6 0.0 9.8e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027725|ref|YP_001013045.1| - 6.4e-13 49.2 0.0 8.6e-08 32.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027725|ref|YP_001013045.1| - 0.00013 21.5 0.0 0.16 11.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|124027725|ref|YP_001013045.1| - 0.00073 19.3 0.3 0.0079 15.9 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|124027725|ref|YP_001013045.1| - 0.0034 17.6 0.2 0.024 14.9 0.2 2.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|124027725|ref|YP_001013045.1| - 0.0074 16.8 0.1 0.011 16.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|124027725|ref|YP_001013045.1| - 0.015 15.7 0.1 0.039 14.3 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|124027725|ref|YP_001013045.1| - 0.016 14.9 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|124027725|ref|YP_001013045.1| - 0.025 14.3 0.1 0.055 13.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|124027725|ref|YP_001013045.1| - 0.032 14.4 0.0 0.87 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|124027725|ref|YP_001013045.1| - 0.084 12.6 0.0 0.38 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|124027725|ref|YP_001013045.1| - 0.14 12.5 0.9 0.22 11.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|124027725|ref|YP_001013045.1| - 0.15 12.4 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane_3 PF12698.7 gi|124027726|ref|YP_001013046.1| - 2.3e-21 76.3 7.1 3.1e-21 75.9 7.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|124027726|ref|YP_001013046.1| - 2.4e-14 53.3 27.0 9.4e-14 51.4 27.0 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|124027726|ref|YP_001013046.1| - 3.4e-09 36.4 18.7 7e-09 35.4 11.5 2.9 2 1 1 3 3 3 2 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|124027726|ref|YP_001013046.1| - 0.00045 19.8 9.6 0.0014 18.3 9.4 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|124027726|ref|YP_001013046.1| - 0.00092 19.2 4.8 0.00092 19.2 4.8 3.0 2 1 1 3 3 3 1 ABC-2 family transporter protein Methyltransf_21 PF05050.12 gi|124027727|ref|YP_001013047.1| - 6.6e-14 52.3 0.0 8.8e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|124027727|ref|YP_001013047.1| - 0.0024 17.7 0.1 0.029 14.1 0.0 2.1 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_22 PF13383.6 gi|124027727|ref|YP_001013047.1| - 0.0056 16.3 0.0 0.008 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|124027727|ref|YP_001013047.1| - 0.016 16.2 0.0 0.063 14.3 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|124027727|ref|YP_001013047.1| - 0.018 14.8 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Thy1 PF02511.15 gi|124027729|ref|YP_001013049.1| - 2.2e-62 210.2 0.4 2.8e-62 209.9 0.4 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Ribonuc_red_lgC PF02867.15 gi|124027730|ref|YP_001013050.1| - 1.1e-130 436.6 0.0 1e-96 324.6 0.0 2.3 2 0 0 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|124027730|ref|YP_001013050.1| - 1.2e-12 47.7 0.3 3e-12 46.4 0.3 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATPase PF06745.13 gi|124027732|ref|YP_001013052.1| - 1.2e-59 201.4 0.1 1.4e-59 201.2 0.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|124027732|ref|YP_001013052.1| - 4.7e-07 28.8 0.2 1e-06 27.7 0.2 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|124027732|ref|YP_001013052.1| - 8.9e-07 28.7 0.0 1.6e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|124027732|ref|YP_001013052.1| - 6.2e-06 25.9 0.0 1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein MEDS PF14417.6 gi|124027732|ref|YP_001013052.1| - 1.2e-05 25.2 0.0 2.3e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Rad51 PF08423.11 gi|124027732|ref|YP_001013052.1| - 2.9e-05 23.5 0.0 4.2e-05 22.9 0.0 1.4 1 1 0 1 1 1 1 Rad51 IstB_IS21 PF01695.17 gi|124027732|ref|YP_001013052.1| - 0.00062 19.5 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|124027732|ref|YP_001013052.1| - 0.0069 15.7 0.0 0.015 14.7 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain PAXNEB PF05625.11 gi|124027732|ref|YP_001013052.1| - 0.037 13.2 0.0 0.063 12.4 0.0 1.3 1 0 0 1 1 1 0 PAXNEB protein AAA_24 PF13479.6 gi|124027732|ref|YP_001013052.1| - 0.065 13.0 0.1 0.13 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|124027732|ref|YP_001013052.1| - 0.066 12.4 0.0 0.098 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) dUTPase PF00692.19 gi|124027733|ref|YP_001013053.1| - 4.9e-09 36.0 0.0 6.8e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|124027733|ref|YP_001013053.1| - 0.2 10.4 0.0 0.68 8.7 0.0 1.9 1 1 1 2 2 2 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 2-Hacid_dh_C PF02826.19 gi|124027736|ref|YP_001013056.1| - 2.3e-71 238.8 0.0 2.9e-71 238.5 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|124027736|ref|YP_001013056.1| - 1.6e-20 73.2 0.0 1.8e-20 73.0 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|124027736|ref|YP_001013056.1| - 4.8e-05 23.6 0.0 7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|124027736|ref|YP_001013056.1| - 0.0033 17.0 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|124027736|ref|YP_001013056.1| - 0.0052 17.3 0.0 0.012 16.2 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Gp_dh_N PF00044.24 gi|124027736|ref|YP_001013056.1| - 0.01 16.1 0.1 0.018 15.4 0.1 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|124027736|ref|YP_001013056.1| - 0.03 14.6 0.1 0.067 13.5 0.1 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|124027736|ref|YP_001013056.1| - 0.037 14.8 0.0 0.086 13.7 0.0 1.7 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.18 gi|124027736|ref|YP_001013056.1| - 0.17 11.8 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|124027737|ref|YP_001013057.1| - 6.3e-71 238.9 4.3 7.9e-71 238.6 4.3 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|124027737|ref|YP_001013057.1| - 2.9e-57 192.2 0.0 1.2e-56 190.2 0.0 2.0 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|124027737|ref|YP_001013057.1| - 0.0028 17.0 0.2 0.01 15.2 0.1 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.19 gi|124027737|ref|YP_001013057.1| - 0.005 15.6 0.1 0.0074 15.1 0.1 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase IlvN PF07991.12 gi|124027737|ref|YP_001013057.1| - 0.025 14.2 0.4 0.08 12.5 0.3 1.9 2 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Bac_GDH PF05088.12 gi|124027737|ref|YP_001013057.1| - 0.046 11.2 0.1 0.065 10.7 0.1 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase PGM_PMM_II PF02879.16 gi|124027737|ref|YP_001013057.1| - 0.056 14.1 0.0 2.3 8.9 0.0 2.4 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AlaDh_PNT_C PF01262.21 gi|124027737|ref|YP_001013057.1| - 0.071 12.4 0.9 0.16 11.3 0.9 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.21 gi|124027737|ref|YP_001013057.1| - 0.098 12.7 0.5 0.23 11.5 0.5 1.6 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Radical_SAM PF04055.21 gi|124027741|ref|YP_001013061.1| - 1.7e-15 57.8 0.1 2.8e-15 57.1 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|124027741|ref|YP_001013061.1| - 6.5e-07 29.7 0.0 1.2e-06 28.9 0.0 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|124027741|ref|YP_001013061.1| - 0.0056 16.8 0.0 0.0098 16.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF89 PF01937.19 gi|124027742|ref|YP_001013062.1| - 4.5e-30 104.8 0.0 5.6e-30 104.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Pyrophosphatase PF00719.19 gi|124027743|ref|YP_001013063.1| - 1.1e-59 200.8 0.1 1.2e-59 200.7 0.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF5622 PF18533.1 gi|124027743|ref|YP_001013063.1| - 0.027 14.6 0.9 0.44 10.7 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF5622) GTP_cyclohydroI PF01227.22 gi|124027744|ref|YP_001013064.1| - 1.1e-69 233.5 0.0 1.2e-69 233.3 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I QueF PF14489.6 gi|124027744|ref|YP_001013064.1| - 0.0011 19.0 0.0 0.0025 17.9 0.0 1.6 1 0 0 1 1 1 1 QueF-like protein PSK_trans_fac PF07704.11 gi|124027744|ref|YP_001013064.1| - 0.014 16.1 2.6 0.72 10.6 0.5 2.9 2 1 0 2 2 2 0 Rv0623-like transcription factor SpoU_methylase PF00588.19 gi|124027746|ref|YP_001013065.1| - 2.2e-09 37.6 0.0 3.7e-09 36.9 0.0 1.4 1 1 0 1 1 1 1 SpoU rRNA Methylase family CAMSAP_CKK PF08683.11 gi|124027745|ref|YP_001013066.1| - 0.18 11.9 0.0 0.36 11.0 0.0 1.4 1 0 0 1 1 1 0 Microtubule-binding calmodulin-regulated spectrin-associated MerT PF02411.15 gi|124027747|ref|YP_001013067.1| - 0.015 15.3 0.2 0.019 15.0 0.2 1.2 1 0 0 1 1 1 0 MerT mercuric transport protein DUF2192 PF09958.9 gi|124027748|ref|YP_001013068.1| - 6.9e-85 284.2 5.5 7.8e-85 284.0 5.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) mTERF PF02536.14 gi|124027748|ref|YP_001013068.1| - 0.025 13.5 0.0 0.035 13.0 0.0 1.2 1 0 0 1 1 1 0 mTERF Mg-por_mtran_C PF07109.11 gi|124027748|ref|YP_001013068.1| - 0.18 12.2 1.1 1.6 9.2 0.0 2.6 3 0 0 3 3 3 0 Magnesium-protoporphyrin IX methyltransferase C-terminus TetR_C_15 PF17918.1 gi|124027748|ref|YP_001013068.1| - 0.26 12.0 7.7 2.6 8.8 0.6 2.9 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Aminotran_3 PF00202.21 gi|124027749|ref|YP_001013069.1| - 7.5e-123 410.2 0.0 9.2e-123 409.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|124027749|ref|YP_001013069.1| - 0.041 13.1 0.0 0.69 9.0 0.0 2.1 2 0 0 2 2 2 0 Aminotransferase class I and II PHD_like PF12910.7 gi|124027749|ref|YP_001013069.1| - 0.13 12.3 1.4 4.4 7.3 0.1 2.7 3 0 0 3 3 3 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system DUF3198 PF11433.8 gi|124027749|ref|YP_001013069.1| - 0.14 12.1 0.8 5.7 6.9 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3198) DUF711 PF05167.12 gi|124027749|ref|YP_001013069.1| - 0.15 10.9 0.0 0.25 10.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised ACR (DUF711) Ribosomal_L35Ae PF01247.18 gi|124027750|ref|YP_001013070.1| - 5.3e-17 61.8 0.2 9e-17 61.0 0.2 1.3 1 1 0 1 1 1 1 Ribosomal protein L35Ae RimM PF01782.18 gi|124027750|ref|YP_001013070.1| - 0.00019 21.6 0.4 0.026 14.7 0.0 2.2 2 0 0 2 2 2 2 RimM N-terminal domain Ntox33 PF15533.6 gi|124027750|ref|YP_001013070.1| - 0.008 16.6 1.2 0.81 10.2 0.1 2.3 2 0 0 2 2 2 2 Bacterial toxin 33 NUDIX PF00293.28 gi|124027751|ref|YP_001013071.1| - 1.7e-18 66.9 0.0 2.1e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|124027751|ref|YP_001013071.1| - 0.00029 20.4 0.0 0.0017 17.9 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) NUDIX_2 PF13869.6 gi|124027751|ref|YP_001013071.1| - 0.01 15.4 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 Nucleotide hydrolase GHMP_kinases_N PF00288.26 gi|124027753|ref|YP_001013073.1| - 2.3e-17 63.0 1.2 2.3e-17 63.0 1.2 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|124027753|ref|YP_001013073.1| - 2e-14 53.7 0.6 2e-14 53.7 0.6 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|124027753|ref|YP_001013073.1| - 0.0047 16.5 0.9 0.0074 15.8 0.1 1.8 2 0 0 2 2 2 1 Galactokinase galactose-binding signature Cren7 PF11520.8 gi|124027754|ref|YP_001013074.1| - 6e-35 119.0 2.8 6.6e-35 118.8 2.8 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 tRNA-synt_1 PF00133.22 gi|124027755|ref|YP_001013075.1| - 3.6e-104 349.2 0.0 1.3e-102 344.1 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|124027755|ref|YP_001013075.1| - 7.8e-31 107.1 0.1 1.4e-30 106.2 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|124027755|ref|YP_001013075.1| - 3.8e-26 91.7 0.0 1.1e-11 44.2 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) DZR PF12773.7 gi|124027755|ref|YP_001013075.1| - 0.0044 17.0 1.8 0.29 11.2 0.2 3.0 3 0 0 3 3 3 1 Double zinc ribbon zf-TFIIB PF13453.6 gi|124027755|ref|YP_001013075.1| - 0.15 11.5 3.8 7.4 6.0 0.1 3.6 3 0 0 3 3 3 0 Transcription factor zinc-finger tRNA-synt_1_2 PF13603.6 gi|124027755|ref|YP_001013075.1| - 0.15 11.6 0.0 2.3 7.7 0.0 2.3 1 1 1 2 2 2 0 Leucyl-tRNA synthetase, Domain 2 zf-IS66 PF13005.7 gi|124027755|ref|YP_001013075.1| - 0.64 10.5 4.2 75 3.9 0.2 4.2 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 DNA_ligase_ZBD PF03119.16 gi|124027755|ref|YP_001013075.1| - 2.7 8.1 6.6 1 9.4 0.5 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain HD_3 PF13023.6 gi|124027756|ref|YP_001013076.1| - 4e-19 69.1 0.0 6e-19 68.6 0.0 1.3 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|124027756|ref|YP_001013076.1| - 3.8e-17 62.6 0.2 4.7e-17 62.3 0.2 1.1 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|124027756|ref|YP_001013076.1| - 0.00032 20.9 0.8 0.00054 20.2 0.8 1.4 1 0 0 1 1 1 1 HD domain MINDY_DUB PF04424.13 gi|124027756|ref|YP_001013076.1| - 0.068 13.2 0.2 0.32 11.0 0.2 2.0 2 0 0 2 2 2 0 MINDY deubiquitinase PriA_CRR PF18319.1 gi|124027758|ref|YP_001013078.1| - 9e-05 22.4 3.8 0.14 12.2 0.2 3.1 3 0 0 3 3 3 2 PriA DNA helicase Cys-rich region (CRR) domain Nudix_N_2 PF14803.6 gi|124027758|ref|YP_001013078.1| - 0.0022 17.8 0.4 2.1 8.3 0.1 2.3 2 0 0 2 2 2 2 Nudix N-terminal Ribosomal_L37e PF01907.19 gi|124027758|ref|YP_001013078.1| - 0.012 15.7 1.0 0.68 10.1 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e Zn_ribbon_recom PF13408.6 gi|124027758|ref|YP_001013078.1| - 0.015 15.8 0.9 1.3 9.5 0.1 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|124027758|ref|YP_001013078.1| - 0.016 15.3 1.7 0.035 14.2 1.7 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|124027758|ref|YP_001013078.1| - 0.017 14.5 1.4 1.2 8.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|124027758|ref|YP_001013078.1| - 0.02 14.5 3.9 0.27 10.9 0.5 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.19 gi|124027758|ref|YP_001013078.1| - 0.054 13.5 0.0 0.059 13.4 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|124027758|ref|YP_001013078.1| - 0.061 13.1 3.7 2.2 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|124027758|ref|YP_001013078.1| - 0.065 13.3 1.0 0.52 10.4 1.0 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.6 gi|124027758|ref|YP_001013078.1| - 0.074 12.4 0.3 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.12 gi|124027758|ref|YP_001013078.1| - 0.096 12.2 1.1 5 6.7 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|124027758|ref|YP_001013078.1| - 0.2 11.6 4.4 3.3 7.8 0.5 2.2 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zf_C2H2_13 PF18508.1 gi|124027758|ref|YP_001013078.1| - 0.35 10.5 0.1 0.35 10.5 0.1 2.0 2 0 0 2 2 2 0 Zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|124027758|ref|YP_001013078.1| - 0.36 10.8 1.6 0.74 9.8 1.5 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|124027758|ref|YP_001013078.1| - 0.37 10.4 1.0 0.8 9.3 0.1 1.9 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF1610 PF07754.11 gi|124027758|ref|YP_001013078.1| - 1.2 9.2 4.2 12 6.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin_2 PF18073.1 gi|124027758|ref|YP_001013078.1| - 2.3 8.0 6.0 1.3 8.8 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Peptidase_M24 PF00557.24 gi|124027759|ref|YP_001013079.1| - 2.3e-44 151.6 0.0 2.7e-44 151.3 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Lactamase_B_3 PF13483.6 gi|124027760|ref|YP_001013080.1| - 7e-25 87.8 0.0 1e-24 87.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|124027760|ref|YP_001013080.1| - 4.1e-23 81.9 0.1 5.1e-23 81.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|124027760|ref|YP_001013080.1| - 6.2e-11 42.7 1.5 8.9e-11 42.2 1.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|124027760|ref|YP_001013080.1| - 0.15 11.5 0.0 0.32 10.4 0.0 1.5 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain tRNA-synt_2d PF01409.20 gi|124027761|ref|YP_001013081.1| - 7e-82 274.6 0.0 1e-81 274.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|124027761|ref|YP_001013081.1| - 8.2e-08 31.9 0.0 7.3e-07 28.8 0.0 2.3 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain TrmB PF01978.19 gi|124027761|ref|YP_001013081.1| - 8e-06 25.7 1.2 4e-05 23.4 0.6 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB tRNA-synt_2 PF00152.20 gi|124027761|ref|YP_001013081.1| - 3.6e-05 23.0 0.6 0.08 12.0 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) PheRS_DBD3 PF18553.1 gi|124027761|ref|YP_001013081.1| - 0.0078 16.5 0.0 0.016 15.5 0.0 1.5 1 0 0 1 1 1 1 PheRS DNA binding domain 3 HTH_IclR PF09339.10 gi|124027761|ref|YP_001013081.1| - 0.014 15.1 1.5 0.035 13.9 0.2 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain HemN_C PF06969.16 gi|124027761|ref|YP_001013081.1| - 0.033 14.2 1.0 5.1 7.2 0.2 3.1 3 0 0 3 3 3 0 HemN C-terminal domain MarR_2 PF12802.7 gi|124027761|ref|YP_001013081.1| - 0.085 12.8 0.3 0.085 12.8 0.3 3.3 3 0 0 3 3 3 0 MarR family RNA_pol_Rpc34 PF05158.12 gi|124027761|ref|YP_001013081.1| - 0.097 12.0 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_36 PF13730.6 gi|124027761|ref|YP_001013081.1| - 0.099 12.6 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain tRNA-synt_2b PF00587.25 gi|124027761|ref|YP_001013081.1| - 0.18 11.8 0.1 0.52 10.3 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) HTH_Crp_2 PF13545.6 gi|124027761|ref|YP_001013081.1| - 0.26 11.3 3.9 0.88 9.6 0.2 3.4 4 0 0 4 4 4 0 Crp-like helix-turn-helix domain tRNA_synthFbeta PF17759.1 gi|124027762|ref|YP_001013082.1| - 4.6e-32 111.2 0.0 7.9e-32 110.4 0.0 1.4 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|124027762|ref|YP_001013082.1| - 3.5e-16 59.2 5.3 7.9e-15 54.9 0.1 3.1 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|124027762|ref|YP_001013082.1| - 6.1e-09 35.8 0.0 1.3e-08 34.8 0.0 1.5 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_1b PF00579.25 gi|124027763|ref|YP_001013083.1| - 3.9e-46 157.7 0.0 2.6e-45 155.0 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Toprim_4 PF13662.6 gi|124027764|ref|YP_001013084.1| - 1.7e-09 38.0 0.4 5.1e-09 36.5 0.1 2.0 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.22 gi|124027764|ref|YP_001013084.1| - 6.3e-05 23.1 0.9 0.00021 21.5 0.1 2.3 2 1 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|124027764|ref|YP_001013084.1| - 0.00044 20.6 0.0 0.0024 18.3 0.0 2.2 2 0 0 2 2 2 1 Toprim-like Peptidase_M50 PF02163.22 gi|124027765|ref|YP_001013085.1| - 1.4e-13 50.7 9.8 5.7e-13 48.7 9.8 2.0 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|124027765|ref|YP_001013085.1| - 0.0053 17.0 0.0 0.016 15.5 0.0 1.8 1 0 0 1 1 1 1 PDZ domain DUF4212 PF13937.6 gi|124027765|ref|YP_001013085.1| - 9.1 6.7 7.9 9.1 6.7 4.0 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4212) NTP_transf_2 PF01909.23 gi|124027766|ref|YP_001013086.1| - 3.5e-06 27.2 0.0 6.6e-06 26.3 0.0 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|124027766|ref|YP_001013086.1| - 0.0014 18.7 0.0 0.0026 17.8 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_AsnC-type PF13404.6 gi|124027766|ref|YP_001013086.1| - 0.01 15.7 0.7 0.027 14.3 0.7 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|124027766|ref|YP_001013086.1| - 0.016 14.7 0.2 0.063 12.8 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Crp PF00325.20 gi|124027766|ref|YP_001013086.1| - 0.28 10.8 1.8 8.7 6.1 0.3 2.8 2 1 0 2 2 2 0 Bacterial regulatory proteins, crp family Radical_SAM PF04055.21 gi|124027767|ref|YP_001013087.1| - 2.7e-10 40.9 0.7 2.5e-08 34.5 0.1 2.6 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|124027767|ref|YP_001013087.1| - 3.2e-08 33.7 0.0 5.9e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|124027767|ref|YP_001013087.1| - 2.5e-05 24.5 0.0 5.5e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain GHMP_kinases_C PF08544.13 gi|124027767|ref|YP_001013087.1| - 0.08 13.3 0.1 1.9 8.9 0.0 2.7 3 0 0 3 3 3 0 GHMP kinases C terminal eRF1_1 PF03463.15 gi|124027768|ref|YP_001013088.1| - 1.5e-28 99.3 0.0 2.5e-28 98.6 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|124027768|ref|YP_001013088.1| - 5.6e-21 75.1 0.0 1.1e-20 74.2 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family2 PF18844.1 gi|124027768|ref|YP_001013088.1| - 0.052 13.6 12.0 0.2 11.7 12.0 2.0 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 2 RPT PF13446.6 gi|124027768|ref|YP_001013088.1| - 0.11 12.4 0.0 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 A repeated domain in UCH-protein baeRF_family10 PF18854.1 gi|124027768|ref|YP_001013088.1| - 0.16 12.2 4.1 0.32 11.3 0.7 2.5 1 1 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 AAA_22 PF13401.6 gi|124027768|ref|YP_001013088.1| - 0.18 12.1 0.1 0.69 10.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain Acetyltransf_1 PF00583.25 gi|124027769|ref|YP_001013089.1| - 5.1e-13 49.3 0.0 6.8e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|124027769|ref|YP_001013089.1| - 6.8e-09 35.7 0.0 8.4e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|124027769|ref|YP_001013089.1| - 1.8e-06 28.2 0.0 2.5e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|124027769|ref|YP_001013089.1| - 0.008 16.1 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_13 PF13880.6 gi|124027769|ref|YP_001013089.1| - 0.024 14.6 0.0 0.04 13.9 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_6 PF13480.7 gi|124027769|ref|YP_001013089.1| - 0.068 13.3 0.0 0.091 12.9 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|124027769|ref|YP_001013089.1| - 0.074 12.7 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|124027769|ref|YP_001013089.1| - 0.11 12.6 0.0 0.38 10.8 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_pol_B PF00136.21 gi|124027770|ref|YP_001013090.1| - 9e-74 248.8 0.0 1.2e-73 248.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|124027770|ref|YP_001013090.1| - 1.7e-37 129.3 0.0 1.4e-35 123.1 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|124027770|ref|YP_001013090.1| - 3.3e-09 36.9 0.0 5.6e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|124027770|ref|YP_001013090.1| - 2.1e-06 27.6 0.0 3.4e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|124027770|ref|YP_001013090.1| - 0.00062 18.7 0.2 0.0026 16.7 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase type B, organellar and viral HTH_17 PF12728.7 gi|124027770|ref|YP_001013090.1| - 0.51 10.6 3.0 0.75 10.0 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain RsgA_GTPase PF03193.16 gi|124027771|ref|YP_001013091.1| - 2.8e-15 56.6 0.0 4.2e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|124027771|ref|YP_001013091.1| - 6.7e-14 51.9 0.0 4.1e-10 39.7 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|124027771|ref|YP_001013091.1| - 1.6e-09 38.0 1.1 0.0028 17.7 0.0 3.1 2 1 1 3 3 3 2 Dynamin family FeoB_N PF02421.18 gi|124027771|ref|YP_001013091.1| - 6.2e-08 32.3 0.1 0.0017 17.9 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|124027771|ref|YP_001013091.1| - 1.5e-05 24.6 1.1 8.3e-05 22.2 0.4 2.3 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|124027771|ref|YP_001013091.1| - 0.0026 17.3 0.1 0.25 10.9 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|124027771|ref|YP_001013091.1| - 0.0038 17.5 0.5 0.38 11.0 0.1 3.0 3 0 0 3 3 3 1 AAA domain MeaB PF03308.16 gi|124027771|ref|YP_001013091.1| - 0.0072 15.3 0.7 0.04 12.9 0.1 2.0 1 1 1 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB IIGP PF05049.13 gi|124027771|ref|YP_001013091.1| - 0.014 14.4 0.0 0.021 13.9 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_22 PF13401.6 gi|124027771|ref|YP_001013091.1| - 0.02 15.2 0.1 1.2 9.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|124027771|ref|YP_001013091.1| - 0.021 15.2 0.0 0.049 14.0 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|124027771|ref|YP_001013091.1| - 0.024 15.2 0.2 0.17 12.4 0.0 2.3 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|124027771|ref|YP_001013091.1| - 0.095 12.0 0.1 0.72 9.1 0.0 2.0 1 1 1 2 2 2 0 Zeta toxin LNS2 PF08235.13 gi|124027771|ref|YP_001013091.1| - 0.21 11.0 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 LNS2 (Lipin/Ned1/Smp2) NTPase_1 PF03266.15 gi|124027772|ref|YP_001013092.1| - 5.4e-52 176.1 0.0 6.3e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.6 gi|124027772|ref|YP_001013092.1| - 0.00072 20.0 0.1 0.00086 19.7 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|124027772|ref|YP_001013092.1| - 0.0011 18.7 0.1 0.0027 17.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|124027772|ref|YP_001013092.1| - 0.0013 19.0 0.1 0.0063 16.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|124027772|ref|YP_001013092.1| - 0.0053 16.9 0.1 0.014 15.6 0.1 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|124027772|ref|YP_001013092.1| - 0.0074 16.2 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 NACHT domain DUF2478 PF10649.9 gi|124027772|ref|YP_001013092.1| - 0.0086 15.7 0.0 0.047 13.3 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) IstB_IS21 PF01695.17 gi|124027772|ref|YP_001013092.1| - 0.011 15.5 0.0 2.4 7.9 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|124027772|ref|YP_001013092.1| - 0.012 14.9 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain MeaB PF03308.16 gi|124027772|ref|YP_001013092.1| - 0.013 14.5 0.2 0.026 13.5 0.2 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|124027772|ref|YP_001013092.1| - 0.021 15.3 0.0 0.034 14.6 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|124027772|ref|YP_001013092.1| - 0.032 14.5 0.0 0.06 13.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|124027772|ref|YP_001013092.1| - 0.034 14.7 0.0 0.065 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|124027772|ref|YP_001013092.1| - 0.042 14.3 0.0 0.064 13.7 0.0 1.3 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|124027772|ref|YP_001013092.1| - 0.052 13.6 0.0 0.091 12.9 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|124027772|ref|YP_001013092.1| - 0.056 13.5 0.0 0.56 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|124027772|ref|YP_001013092.1| - 0.067 13.1 0.1 0.098 12.5 0.1 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RuvB_N PF05496.12 gi|124027772|ref|YP_001013092.1| - 0.072 12.8 0.0 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain MobB PF03205.14 gi|124027772|ref|YP_001013092.1| - 0.081 12.8 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 gi|124027772|ref|YP_001013092.1| - 0.085 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DnaB_C PF03796.15 gi|124027772|ref|YP_001013092.1| - 0.087 12.1 0.0 0.16 11.3 0.0 1.4 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|124027772|ref|YP_001013092.1| - 0.16 11.2 0.1 0.2 10.9 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|124027772|ref|YP_001013092.1| - 0.23 11.1 0.0 0.34 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain Bromodomain PF00439.25 gi|124027773|ref|YP_001013093.1| - 0.023 14.8 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 Bromodomain ABC_tran PF00005.27 gi|124027774|ref|YP_001013094.1| - 1.5e-33 116.2 0.0 2e-33 115.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027774|ref|YP_001013094.1| - 1.4e-06 28.3 0.4 0.012 15.4 0.4 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027774|ref|YP_001013094.1| - 2e-06 27.4 0.0 0.025 14.0 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|124027774|ref|YP_001013094.1| - 0.00033 20.3 0.3 0.00065 19.4 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|124027774|ref|YP_001013094.1| - 0.00092 19.2 0.2 0.0016 18.3 0.2 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|124027774|ref|YP_001013094.1| - 0.0032 17.3 0.0 1.1 8.9 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|124027774|ref|YP_001013094.1| - 0.0055 17.1 0.1 0.01 16.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|124027774|ref|YP_001013094.1| - 0.0062 16.8 0.1 0.022 15.1 0.1 2.0 1 1 1 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|124027774|ref|YP_001013094.1| - 0.0099 16.4 0.2 0.016 15.7 0.2 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|124027774|ref|YP_001013094.1| - 0.028 14.3 0.0 0.65 9.9 0.0 2.1 2 0 0 2 2 2 0 NTPase MMR_HSR1 PF01926.23 gi|124027774|ref|YP_001013094.1| - 0.036 14.2 0.3 0.13 12.3 0.1 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|124027774|ref|YP_001013094.1| - 0.06 13.9 0.4 0.22 12.1 0.3 2.0 2 1 1 3 3 3 0 AAA domain T2SSE PF00437.20 gi|124027774|ref|YP_001013094.1| - 0.061 12.4 0.0 0.099 11.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA12 PF10443.9 gi|124027774|ref|YP_001013094.1| - 0.061 12.0 0.0 0.084 11.6 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein ATPase_2 PF01637.18 gi|124027774|ref|YP_001013094.1| - 0.067 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|124027774|ref|YP_001013094.1| - 0.073 13.3 0.0 1.3 9.3 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|124027774|ref|YP_001013094.1| - 0.12 12.0 0.1 0.46 10.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|124027774|ref|YP_001013094.1| - 0.12 12.1 0.1 0.2 11.4 0.0 1.4 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|124027774|ref|YP_001013094.1| - 0.14 11.9 0.1 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 Cytidylate kinase NB-ARC PF00931.22 gi|124027774|ref|YP_001013094.1| - 0.24 10.6 0.2 0.54 9.4 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain G-alpha PF00503.20 gi|124027774|ref|YP_001013094.1| - 0.25 10.4 0.0 0.37 9.9 0.0 1.4 1 1 0 1 1 1 0 G-protein alpha subunit NPCBM_assoc PF10633.9 gi|124027775|ref|YP_001013095.1| - 1.2e-12 47.9 1.6 0.052 13.8 0.0 8.0 8 0 0 8 8 8 4 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|124027775|ref|YP_001013095.1| - 0.00077 19.7 12.8 6.7 7.1 0.0 7.5 7 0 0 7 7 7 4 Domain of unknown function DUF11 MacB_PCD PF12704.7 gi|124027776|ref|YP_001013096.1| - 6.3e-19 69.1 0.8 6.3e-19 69.1 0.8 2.3 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|124027776|ref|YP_001013096.1| - 1.8e-11 44.3 6.8 1.8e-11 44.3 6.8 3.2 3 0 0 3 3 3 1 FtsX-like permease family B277 PF17623.2 gi|124027776|ref|YP_001013096.1| - 3.2 6.7 6.6 5.8 5.9 6.6 1.4 1 0 0 1 1 1 0 Domain of unknown function MCM PF00493.23 gi|124027777|ref|YP_001013097.1| - 5.1e-101 336.4 0.0 9.8e-101 335.5 0.0 1.5 2 0 0 2 2 2 1 MCM P-loop domain MCM_OB PF17207.3 gi|124027777|ref|YP_001013097.1| - 4.5e-37 126.7 0.1 7.7e-37 126.0 0.1 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|124027777|ref|YP_001013097.1| - 2.6e-29 101.4 1.3 2.6e-29 101.4 1.3 2.3 2 0 0 2 2 2 1 MCM AAA-lid domain MCM_N PF14551.6 gi|124027777|ref|YP_001013097.1| - 4.2e-18 65.8 1.7 7.7e-18 65.0 0.4 2.1 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.14 gi|124027777|ref|YP_001013097.1| - 3.5e-07 30.3 0.0 1.5e-06 28.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|124027777|ref|YP_001013097.1| - 1.3e-06 28.0 0.1 7.8e-05 22.1 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|124027777|ref|YP_001013097.1| - 3.5e-05 23.7 0.0 9.2e-05 22.3 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF3987 PF13148.6 gi|124027777|ref|YP_001013097.1| - 8.1e-05 21.8 0.4 0.0022 17.0 0.3 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3987) Sigma54_activat PF00158.26 gi|124027777|ref|YP_001013097.1| - 0.00085 19.1 0.1 0.005 16.5 0.1 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain EAP30 PF04157.16 gi|124027777|ref|YP_001013097.1| - 0.038 13.3 0.1 0.077 12.3 0.1 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family MCM_bind PF09739.9 gi|124027777|ref|YP_001013097.1| - 0.17 10.3 0.0 0.32 9.4 0.0 1.4 1 0 0 1 1 1 0 Mini-chromosome maintenance replisome factor AAA_16 PF13191.6 gi|124027777|ref|YP_001013097.1| - 0.42 11.0 1.9 2.7 8.4 1.9 2.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_lid_2 PF17863.1 gi|124027777|ref|YP_001013097.1| - 1.3 8.9 5.1 0.53 10.2 1.4 2.3 2 0 0 2 2 2 0 AAA lid domain AAA PF00004.29 gi|124027779|ref|YP_001013099.1| - 1.4e-14 54.6 0.5 8.2e-14 52.2 0.0 2.5 4 0 0 4 4 3 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.18 gi|124027779|ref|YP_001013099.1| - 9.4e-07 28.9 0.0 7.3e-06 26.0 0.0 2.3 2 0 0 2 2 2 1 Bacterial dnaA protein RFC1 PF08519.12 gi|124027779|ref|YP_001013099.1| - 6.3e-06 26.4 0.0 1.2e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain DUF815 PF05673.13 gi|124027779|ref|YP_001013099.1| - 2.2e-05 23.7 0.0 0.00016 21.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) DNA_pol3_delta PF06144.13 gi|124027779|ref|YP_001013099.1| - 2.2e-05 24.3 0.4 6.6e-05 22.7 0.0 2.0 3 0 0 3 3 3 1 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|124027779|ref|YP_001013099.1| - 3.2e-05 23.7 0.0 8.8e-05 22.3 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|124027779|ref|YP_001013099.1| - 3.9e-05 24.1 0.1 0.00028 21.3 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|124027779|ref|YP_001013099.1| - 0.00015 22.0 0.9 0.00039 20.7 0.1 2.1 2 0 0 2 2 2 1 AAA C-terminal domain Rad17 PF03215.15 gi|124027779|ref|YP_001013099.1| - 0.0003 20.8 0.0 0.0023 17.9 0.0 2.4 2 1 0 2 2 2 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|124027779|ref|YP_001013099.1| - 0.00037 20.5 0.0 0.00071 19.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|124027779|ref|YP_001013099.1| - 0.00051 20.0 0.3 0.0014 18.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|124027779|ref|YP_001013099.1| - 0.00082 19.0 0.1 0.0044 16.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|124027779|ref|YP_001013099.1| - 0.00095 19.3 0.4 0.003 17.7 0.0 2.0 2 1 1 3 3 2 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|124027779|ref|YP_001013099.1| - 0.0033 17.7 0.0 0.14 12.5 0.0 2.7 1 1 1 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|124027779|ref|YP_001013099.1| - 0.0092 15.5 0.1 0.026 14.1 0.0 1.8 3 0 0 3 3 3 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|124027779|ref|YP_001013099.1| - 0.03 14.1 0.0 0.093 12.5 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|124027779|ref|YP_001013099.1| - 0.031 14.2 0.0 0.088 12.7 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase Parvo_NS1 PF01057.17 gi|124027779|ref|YP_001013099.1| - 0.054 12.6 0.0 0.13 11.3 0.0 1.6 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|124027779|ref|YP_001013099.1| - 0.099 12.5 0.1 0.63 9.9 0.0 2.2 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea MoaC PF01967.21 gi|124027780|ref|YP_001013100.1| - 4.2e-47 159.6 2.2 5.1e-47 159.4 2.2 1.0 1 0 0 1 1 1 1 MoaC family NfeD PF01957.18 gi|124027780|ref|YP_001013100.1| - 0.0049 17.2 0.2 0.077 13.4 0.1 2.3 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding DUF3956 PF13104.6 gi|124027780|ref|YP_001013100.1| - 0.05 13.8 0.1 0.14 12.4 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3956) MRP-S34 PF16053.5 gi|124027780|ref|YP_001013100.1| - 0.12 12.1 0.2 0.17 11.5 0.2 1.3 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S34 HTH_45 PF14947.6 gi|124027781|ref|YP_001013101.1| - 0.001 19.0 0.1 0.0013 18.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|124027781|ref|YP_001013101.1| - 0.0014 18.6 0.6 0.0021 18.0 0.6 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|124027781|ref|YP_001013101.1| - 0.0058 17.0 0.2 0.007 16.7 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|124027781|ref|YP_001013101.1| - 0.011 15.6 0.3 0.017 15.0 0.3 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|124027781|ref|YP_001013101.1| - 0.013 15.3 1.0 0.02 14.8 1.0 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|124027781|ref|YP_001013101.1| - 0.015 14.8 1.8 0.024 14.2 1.8 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|124027781|ref|YP_001013101.1| - 0.036 13.9 1.3 0.059 13.2 1.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Cdc6_C PF09079.11 gi|124027782|ref|YP_001013102.1| - 3.9e-19 68.4 0.1 1.3e-18 66.7 0.2 1.9 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|124027782|ref|YP_001013102.1| - 2.3e-13 50.6 0.0 1e-12 48.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|124027782|ref|YP_001013102.1| - 2e-06 28.3 0.1 7.9e-05 23.1 0.1 2.5 1 1 0 1 1 1 1 AAA ATPase domain TniB PF05621.11 gi|124027782|ref|YP_001013102.1| - 5.1e-06 26.0 0.0 1.2e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 Bacterial TniB protein AAA PF00004.29 gi|124027782|ref|YP_001013102.1| - 4.3e-05 23.9 0.0 0.00011 22.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PfkB PF00294.24 gi|124027782|ref|YP_001013102.1| - 0.0038 16.6 0.0 0.0059 16.0 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase AAA_7 PF12775.7 gi|124027782|ref|YP_001013102.1| - 0.013 15.0 0.0 0.031 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|124027782|ref|YP_001013102.1| - 0.014 15.3 0.0 0.094 12.6 0.0 2.1 2 0 0 2 2 2 0 NACHT domain TsaE PF02367.17 gi|124027782|ref|YP_001013102.1| - 0.052 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|124027782|ref|YP_001013102.1| - 0.13 12.0 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|124027782|ref|YP_001013102.1| - 0.15 11.4 0.0 0.32 10.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|124027782|ref|YP_001013102.1| - 0.15 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|124027782|ref|YP_001013102.1| - 0.16 11.2 0.0 0.33 10.1 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Enolase_C PF00113.22 gi|124027784|ref|YP_001013104.1| - 2.1e-114 381.8 0.0 2.5e-114 381.5 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|124027784|ref|YP_001013104.1| - 8.7e-54 181.2 0.0 1.5e-53 180.5 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|124027784|ref|YP_001013104.1| - 1e-06 28.5 0.0 1.5e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like TrkA_N PF02254.18 gi|124027785|ref|YP_001013105.1| - 2.7e-26 92.1 5.8 9.2e-26 90.4 5.2 1.9 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|124027785|ref|YP_001013105.1| - 3.5e-08 33.8 1.4 6.6e-08 32.9 1.4 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_C PF02080.21 gi|124027785|ref|YP_001013105.1| - 3.6e-08 33.1 3.2 2.2e-07 30.6 0.1 2.9 2 1 1 3 3 3 1 TrkA-C domain Shikimate_DH PF01488.20 gi|124027785|ref|YP_001013105.1| - 6.7e-08 32.7 0.4 1.1e-07 31.9 0.4 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|124027785|ref|YP_001013105.1| - 2.6e-07 30.4 0.1 5.8e-07 29.3 0.1 1.6 2 0 0 2 2 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|124027785|ref|YP_001013105.1| - 6.1e-07 29.7 0.1 1.4e-05 25.3 0.2 2.2 1 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|124027785|ref|YP_001013105.1| - 1.1e-06 29.1 0.5 2.6e-06 27.9 0.5 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|124027785|ref|YP_001013105.1| - 2e-06 27.5 0.1 3.5e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GFO_IDH_MocA PF01408.22 gi|124027785|ref|YP_001013105.1| - 3.8e-06 27.7 0.1 6.3e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|124027785|ref|YP_001013105.1| - 2.1e-05 24.8 0.8 3.6e-05 24.0 0.5 1.5 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|124027785|ref|YP_001013105.1| - 4.1e-05 23.5 3.8 5.1e-05 23.3 3.1 1.5 2 0 0 2 2 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|124027785|ref|YP_001013105.1| - 7.4e-05 22.7 0.2 0.0001 22.3 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|124027785|ref|YP_001013105.1| - 0.00012 22.0 0.1 0.00015 21.7 0.1 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Epimerase PF01370.21 gi|124027785|ref|YP_001013105.1| - 0.00015 21.3 0.1 0.00021 20.8 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAD_binding_3 PF01494.19 gi|124027785|ref|YP_001013105.1| - 0.00034 20.0 0.1 0.0006 19.2 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain LpxI_N PF17930.1 gi|124027785|ref|YP_001013105.1| - 0.00046 20.1 0.2 0.0011 18.9 0.1 1.6 1 1 0 1 1 1 1 LpxI N-terminal domain adh_short PF00106.25 gi|124027785|ref|YP_001013105.1| - 0.00052 19.5 0.8 0.001 18.5 0.5 1.7 1 1 1 2 2 2 1 short chain dehydrogenase DapB_N PF01113.20 gi|124027785|ref|YP_001013105.1| - 0.00058 20.0 1.1 0.00088 19.4 1.1 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 gi|124027785|ref|YP_001013105.1| - 0.002 17.5 0.0 0.0031 16.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1188 PF06690.11 gi|124027785|ref|YP_001013105.1| - 0.0028 17.2 0.1 0.0041 16.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) UPF0146 PF03686.13 gi|124027785|ref|YP_001013105.1| - 0.0032 17.3 1.8 0.0062 16.4 1.1 2.0 2 1 0 2 2 1 1 Uncharacterised protein family (UPF0146) ThiF PF00899.21 gi|124027785|ref|YP_001013105.1| - 0.0035 16.7 6.8 0.061 12.7 0.5 2.1 1 1 1 2 2 2 2 ThiF family Pyr_redox PF00070.27 gi|124027785|ref|YP_001013105.1| - 0.0042 17.6 0.4 0.01 16.4 0.1 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|124027785|ref|YP_001013105.1| - 0.0048 17.1 0.1 0.014 15.6 0.0 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.6 gi|124027785|ref|YP_001013105.1| - 0.014 15.9 0.2 0.02 15.4 0.2 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain AAA_31 PF13614.6 gi|124027785|ref|YP_001013105.1| - 0.015 15.2 0.1 0.021 14.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain AlaDh_PNT_C PF01262.21 gi|124027785|ref|YP_001013105.1| - 0.019 14.2 2.1 0.02 14.2 0.9 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Rossmann-like PF10727.9 gi|124027785|ref|YP_001013105.1| - 0.026 14.4 2.4 0.064 13.1 0.2 2.2 1 1 0 2 2 2 0 Rossmann-like domain adh_short_C2 PF13561.6 gi|124027785|ref|YP_001013105.1| - 0.036 13.6 1.5 0.05 13.1 0.9 1.5 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase NmrA PF05368.13 gi|124027785|ref|YP_001013105.1| - 0.036 13.6 1.8 0.19 11.2 1.3 2.0 2 0 0 2 2 2 0 NmrA-like family RmlD_sub_bind PF04321.17 gi|124027785|ref|YP_001013105.1| - 0.064 12.4 0.1 0.087 11.9 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain CbiA PF01656.23 gi|124027785|ref|YP_001013105.1| - 0.076 13.1 0.0 0.096 12.7 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain GDP_Man_Dehyd PF16363.5 gi|124027785|ref|YP_001013105.1| - 0.1 12.0 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase FAD_binding_2 PF00890.24 gi|124027785|ref|YP_001013105.1| - 0.11 11.6 0.1 0.14 11.3 0.1 1.1 1 0 0 1 1 1 0 FAD binding domain Glyco_trans_4_2 PF13477.6 gi|124027785|ref|YP_001013105.1| - 0.11 12.5 0.2 1.1 9.3 0.2 2.2 1 1 0 1 1 1 0 Glycosyl transferase 4-like HI0933_like PF03486.14 gi|124027785|ref|YP_001013105.1| - 0.13 10.9 0.2 0.18 10.5 0.2 1.1 1 0 0 1 1 1 0 HI0933-like protein DAO PF01266.24 gi|124027785|ref|YP_001013105.1| - 0.14 11.7 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase ADH_zinc_N PF00107.26 gi|124027785|ref|YP_001013105.1| - 0.19 11.7 3.9 5.6 6.9 0.1 2.2 1 1 1 2 2 2 0 Zinc-binding dehydrogenase MS_channel PF00924.18 gi|124027786|ref|YP_001013106.1| - 1.2e-09 38.0 4.2 1.2e-09 38.0 4.2 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel zf-NADH-PPase PF09297.11 gi|124027787|ref|YP_001013107.1| - 5.8e-06 25.9 2.3 0.0056 16.3 0.2 2.3 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|124027787|ref|YP_001013107.1| - 2.4e-05 24.2 1.4 0.13 12.2 0.1 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain CpXC PF14353.6 gi|124027787|ref|YP_001013107.1| - 0.0003 20.8 0.0 0.00043 20.3 0.0 1.2 1 0 0 1 1 1 1 CpXC protein Zn-ribbon_8 PF09723.10 gi|124027787|ref|YP_001013107.1| - 0.00041 20.4 0.1 0.91 9.7 0.0 2.3 2 0 0 2 2 2 2 Zinc ribbon domain FYDLN_acid PF09538.10 gi|124027787|ref|YP_001013107.1| - 0.00042 21.0 0.5 0.27 11.9 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (FYDLN_acid) PhnA_Zn_Ribbon PF08274.12 gi|124027787|ref|YP_001013107.1| - 0.00051 19.9 0.4 0.07 13.1 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|124027787|ref|YP_001013107.1| - 0.00081 19.4 0.0 0.0014 18.6 0.0 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf_UBZ PF18439.1 gi|124027787|ref|YP_001013107.1| - 0.00098 18.7 1.0 0.32 10.6 0.1 2.3 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger TFIIS_C PF01096.18 gi|124027787|ref|YP_001013107.1| - 0.0017 18.1 2.3 0.047 13.5 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.12 gi|124027787|ref|YP_001013107.1| - 0.0019 17.7 5.2 0.41 10.2 0.1 2.9 3 0 0 3 3 3 2 TFIIB zinc-binding zinc_ribbon_5 PF13719.6 gi|124027787|ref|YP_001013107.1| - 0.0026 17.5 2.0 0.033 14.0 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|124027787|ref|YP_001013107.1| - 0.0027 17.6 0.3 3.1 7.8 0.0 2.6 2 0 0 2 2 2 2 Nudix N-terminal zf-ISL3 PF14690.6 gi|124027787|ref|YP_001013107.1| - 0.0035 18.0 1.0 2.4 8.9 0.1 2.3 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-nanos PF05741.13 gi|124027787|ref|YP_001013107.1| - 0.0059 16.8 0.1 4.5 7.6 0.0 2.2 2 0 0 2 2 2 0 Nanos RNA binding domain zinc_ribbon_2 PF13240.6 gi|124027787|ref|YP_001013107.1| - 0.0069 16.1 4.5 1.3 8.8 0.8 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|124027787|ref|YP_001013107.1| - 0.0084 15.5 4.6 0.56 9.7 0.5 2.3 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|124027787|ref|YP_001013107.1| - 0.0095 15.8 0.4 1.9 8.5 0.0 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DUF4379 PF14311.6 gi|124027787|ref|YP_001013107.1| - 0.01 16.2 1.1 0.045 14.1 0.1 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|124027787|ref|YP_001013107.1| - 0.014 15.2 3.5 0.14 12.1 0.3 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain UPF0547 PF10571.9 gi|124027787|ref|YP_001013107.1| - 0.018 15.1 5.6 0.19 11.8 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-HIT PF04438.16 gi|124027787|ref|YP_001013107.1| - 0.022 14.6 3.3 0.42 10.5 1.3 2.1 2 0 0 2 2 2 0 HIT zinc finger DNA_RNApol_7kD PF03604.13 gi|124027787|ref|YP_001013107.1| - 0.024 14.3 1.8 2.6 7.8 0.1 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.10 gi|124027787|ref|YP_001013107.1| - 0.025 14.3 0.3 2.5 7.9 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|124027787|ref|YP_001013107.1| - 0.027 14.4 3.4 0.69 9.9 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|124027787|ref|YP_001013107.1| - 0.028 14.1 2.0 2.1 8.1 0.1 2.5 3 0 0 3 3 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-3CxxC PF13695.6 gi|124027787|ref|YP_001013107.1| - 0.037 14.5 0.0 0.093 13.2 0.0 1.7 2 0 0 2 2 2 0 Zinc-binding domain zf-Mss51 PF13824.6 gi|124027787|ref|YP_001013107.1| - 0.038 14.1 0.3 5.5 7.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|124027787|ref|YP_001013107.1| - 0.04 13.7 2.2 4 7.3 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain HypA PF01155.19 gi|124027787|ref|YP_001013107.1| - 0.044 13.8 0.1 0.11 12.5 0.1 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-UDP PF14569.6 gi|124027787|ref|YP_001013107.1| - 0.049 13.8 0.6 8 6.7 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding RING-finger zinc_ribbon_9 PF14369.6 gi|124027787|ref|YP_001013107.1| - 0.053 13.8 1.0 7.5 6.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon zf-RRN7 PF11781.8 gi|124027787|ref|YP_001013107.1| - 0.058 13.1 5.1 1.8 8.3 0.6 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-3CxxC_2 PF17180.4 gi|124027787|ref|YP_001013107.1| - 0.066 14.0 1.3 0.54 11.0 0.3 2.2 2 1 0 2 2 2 0 Zinc-binding domain Ogr_Delta PF04606.12 gi|124027787|ref|YP_001013107.1| - 0.074 13.0 2.1 1.5 8.8 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-TFIIB PF13453.6 gi|124027787|ref|YP_001013107.1| - 0.081 12.3 0.5 9 5.7 0.1 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF1610 PF07754.11 gi|124027787|ref|YP_001013107.1| - 0.085 12.8 8.9 0.15 12.1 2.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-FPG_IleRS PF06827.14 gi|124027787|ref|YP_001013107.1| - 0.085 12.7 7.8 0.43 10.5 0.6 2.6 2 1 1 3 3 3 0 Zinc finger found in FPG and IleRS zf-ZPR1 PF03367.13 gi|124027787|ref|YP_001013107.1| - 0.086 12.7 0.1 0.28 11.0 0.1 1.8 1 1 0 1 1 1 0 ZPR1 zinc-finger domain Prim_Zn_Ribbon PF08273.12 gi|124027787|ref|YP_001013107.1| - 0.091 13.1 2.3 2.6 8.4 0.1 2.4 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Prok-RING_1 PF14446.6 gi|124027787|ref|YP_001013107.1| - 0.093 12.7 0.9 3.8 7.5 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Rubredoxin PF00301.20 gi|124027787|ref|YP_001013107.1| - 0.093 12.8 2.6 8.6 6.5 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin Nop10p PF04135.12 gi|124027787|ref|YP_001013107.1| - 0.17 11.9 0.7 4.4 7.4 0.2 2.3 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-C2H2 PF00096.26 gi|124027787|ref|YP_001013107.1| - 0.35 11.4 1.4 27 5.5 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ACC PF17848.1 gi|124027787|ref|YP_001013107.1| - 0.44 10.7 5.2 6.5 6.9 0.6 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Cys_rich_CPXG PF14255.6 gi|124027787|ref|YP_001013107.1| - 0.64 10.0 3.7 2.9 7.9 0.0 2.6 3 0 0 3 3 2 0 Cysteine-rich CPXCG Trm112p PF03966.16 gi|124027787|ref|YP_001013107.1| - 1 10.0 2.7 3.1 8.5 1.0 2.4 2 1 0 2 2 2 0 Trm112p-like protein zf-IS66 PF13005.7 gi|124027787|ref|YP_001013107.1| - 1.4 9.3 6.7 9.1 6.8 0.2 2.7 2 1 1 3 3 2 0 zinc-finger binding domain of transposase IS66 Peptidase_S24 PF00717.23 gi|124027788|ref|YP_001013108.1| - 9e-09 35.2 0.3 1.3e-08 34.6 0.3 1.3 1 1 0 1 1 1 1 Peptidase S24-like Topoisom_bac PF01131.20 gi|124027789|ref|YP_001013109.1| - 4.5e-114 381.7 0.0 5.5e-114 381.4 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|124027789|ref|YP_001013109.1| - 5e-13 49.2 0.0 1e-12 48.2 0.0 1.6 1 0 0 1 1 1 1 Toprim domain SPOR PF05036.13 gi|124027789|ref|YP_001013109.1| - 0.0031 17.9 0.1 0.0092 16.3 0.1 1.8 1 0 0 1 1 1 1 Sporulation related domain RNA_pol_Rpb6 PF01192.22 gi|124027790|ref|YP_001013110.1| - 2.8e-12 46.3 0.0 3.9e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Cpn60_TCP1 PF00118.24 gi|124027791|ref|YP_001013111.1| - 2e-177 590.7 11.8 2.4e-177 590.5 11.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family RuvB_C PF05491.13 gi|124027791|ref|YP_001013111.1| - 0.073 12.9 0.1 0.36 10.8 0.1 2.2 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Thioredoxin PF00085.20 gi|124027792|ref|YP_001013112.1| - 0.0039 17.2 0.0 0.0051 16.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin HCV_NS2 PF01538.18 gi|124027792|ref|YP_001013112.1| - 0.1 12.3 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS2 TraF PF13728.6 gi|124027792|ref|YP_001013112.1| - 0.19 11.6 0.0 0.26 11.1 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein TF_Zn_Ribbon PF08271.12 gi|124027793|ref|YP_001013113.1| - 0.024 14.1 0.8 0.058 12.9 0.8 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|124027793|ref|YP_001013113.1| - 0.052 13.6 0.1 0.081 13.0 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2_12 PF18658.1 gi|124027793|ref|YP_001013113.1| - 0.087 12.4 0.0 0.3 10.7 0.0 1.9 1 0 0 1 1 1 0 Zinc-finger C2H2-type zinc_ribbon_2 PF13240.6 gi|124027793|ref|YP_001013113.1| - 0.11 12.2 1.8 0.42 10.4 1.9 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|124027793|ref|YP_001013113.1| - 0.49 10.9 1.8 28 5.4 1.8 2.4 1 1 0 1 1 1 0 Zinc-finger double domain Cut12 PF11500.8 gi|124027794|ref|YP_001013114.1| - 0.063 13.2 0.5 0.078 12.9 0.5 1.1 1 0 0 1 1 1 0 Spindle pole body formation-associated protein p31comet PF06581.12 gi|124027794|ref|YP_001013114.1| - 0.098 11.8 0.1 0.12 11.5 0.1 1.1 1 0 0 1 1 1 0 Mad1 and Cdc20-bound-Mad2 binding PNP_UDP_1 PF01048.20 gi|124027795|ref|YP_001013115.1| - 1e-38 132.9 1.7 1.2e-38 132.7 1.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily YdjM PF04307.14 gi|124027795|ref|YP_001013115.1| - 0.1 11.9 0.7 0.4 10.0 0.7 2.0 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase LytR_C PF13399.6 gi|124027796|ref|YP_001013116.1| - 0.0012 19.7 1.4 0.095 13.7 0.6 2.4 1 1 1 2 2 2 2 LytR cell envelope-related transcriptional attenuator Glucodextran_N PF09137.11 gi|124027796|ref|YP_001013116.1| - 0.018 14.6 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Glucodextranase, domain N SdrD_B PF17210.3 gi|124027796|ref|YP_001013116.1| - 0.05 13.8 0.1 0.062 13.5 0.1 1.2 1 0 0 1 1 1 0 SdrD B-like domain Glyco_transf_10 PF00852.19 gi|124027798|ref|YP_001013118.1| - 0.013 15.3 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 10 (fucosyltransferase) C-term UPF0175 PF03683.13 gi|124027798|ref|YP_001013118.1| - 0.018 14.8 0.1 0.044 13.5 0.1 1.7 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_23 PF13384.6 gi|124027798|ref|YP_001013118.1| - 0.049 13.5 0.1 0.096 12.5 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain NAD_binding_7 PF13241.6 gi|124027798|ref|YP_001013118.1| - 0.05 14.1 0.0 0.15 12.5 0.0 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding Sin3a_C PF16879.5 gi|124027798|ref|YP_001013118.1| - 0.091 12.5 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 C-terminal domain of Sin3a protein HTH_1 PF00126.27 gi|124027798|ref|YP_001013118.1| - 0.15 12.0 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Thioredoxin_3 PF13192.6 gi|124027799|ref|YP_001013119.1| - 5.1e-35 119.4 1.3 1.2e-17 63.7 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|124027799|ref|YP_001013119.1| - 2.8e-06 27.2 0.3 0.093 12.7 0.1 2.2 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|124027799|ref|YP_001013119.1| - 0.00019 21.8 3.5 0.38 11.2 0.3 3.4 2 2 0 2 2 2 2 Thioredoxin-like domain Glutaredoxin PF00462.24 gi|124027799|ref|YP_001013119.1| - 0.0002 21.5 6.2 0.085 13.1 1.2 3.9 3 1 0 3 3 3 2 Glutaredoxin TrbC_Ftype PF09673.10 gi|124027799|ref|YP_001013119.1| - 0.0035 17.4 0.1 2 8.5 0.0 2.5 2 1 0 2 2 2 2 Type-F conjugative transfer system pilin assembly protein YfmQ PF10787.9 gi|124027799|ref|YP_001013119.1| - 0.0042 16.9 0.2 0.0075 16.0 0.2 1.4 1 0 0 1 1 1 1 Uncharacterised protein from bacillus cereus group Thioredoxin_4 PF13462.6 gi|124027799|ref|YP_001013119.1| - 0.0054 16.9 2.9 5.2 7.2 0.0 3.8 2 2 2 4 4 4 1 Thioredoxin TraF PF13728.6 gi|124027799|ref|YP_001013119.1| - 0.014 15.3 0.0 0.62 9.8 0.0 2.4 2 1 0 2 2 2 0 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|124027799|ref|YP_001013119.1| - 0.049 13.4 0.1 0.78 9.5 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin GatB_N PF02934.15 gi|124027800|ref|YP_001013120.1| - 1.4e-70 237.9 0.0 2e-70 237.3 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|124027800|ref|YP_001013120.1| - 3.8e-22 78.8 0.3 3.8e-22 78.8 0.3 2.9 4 0 0 4 4 4 1 GatB domain GAD PF02938.14 gi|124027800|ref|YP_001013120.1| - 1.9e-21 76.1 0.1 8.2e-21 74.0 0.0 2.2 2 0 0 2 2 2 1 GAD domain tRNA_synt_1c_R1 PF04558.15 gi|124027800|ref|YP_001013120.1| - 8.4e-07 29.1 0.2 1.7e-06 28.1 0.2 1.5 1 0 0 1 1 1 1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 YqeY PF09424.10 gi|124027800|ref|YP_001013120.1| - 5.6e-06 26.5 0.3 5.6e-06 26.5 0.3 2.1 2 0 0 2 2 2 1 Yqey-like protein Mor PF08765.11 gi|124027800|ref|YP_001013120.1| - 0.012 15.6 0.0 0.07 13.1 0.0 2.4 2 0 0 2 2 2 0 Mor transcription activator family DUF356 PF04009.12 gi|124027800|ref|YP_001013120.1| - 0.094 13.0 0.2 0.52 10.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF356) Asparaginase PF00710.20 gi|124027801|ref|YP_001013121.1| - 2.2e-63 213.3 0.1 4.6e-63 212.2 0.1 1.5 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|124027801|ref|YP_001013121.1| - 1.3e-35 122.1 0.1 4.8e-35 120.2 0.0 1.9 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|124027801|ref|YP_001013121.1| - 5.6e-22 76.8 0.1 1.5e-21 75.4 0.1 1.8 1 0 0 1 1 1 1 GatD N-terminal domain Ribosomal_S30 PF04758.14 gi|124027802|ref|YP_001013122.1| - 1.3e-11 44.5 3.9 1.5e-11 44.3 3.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S30 Alba PF01918.21 gi|124027803|ref|YP_001013123.1| - 1.2e-22 79.5 1.2 1.6e-22 79.1 1.2 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|124027803|ref|YP_001013123.1| - 0.036 14.0 0.5 0.043 13.8 0.4 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Topoisom_bac PF01131.20 gi|124027804|ref|YP_001013124.1| - 5.6e-83 279.3 0.0 1.1e-82 278.2 0.0 1.5 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|124027804|ref|YP_001013124.1| - 3.3e-20 72.2 0.0 1e-19 70.6 0.0 1.9 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|124027804|ref|YP_001013124.1| - 7.9e-14 51.8 0.1 1.7e-13 50.7 0.1 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|124027804|ref|YP_001013124.1| - 5e-06 26.8 0.0 0.011 16.1 0.0 3.3 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_30 PF13604.6 gi|124027804|ref|YP_001013124.1| - 5.9e-05 22.9 0.0 0.00014 21.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|124027804|ref|YP_001013124.1| - 0.00067 19.3 0.0 0.12 12.0 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|124027804|ref|YP_001013124.1| - 0.0011 18.6 0.3 0.01 15.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|124027804|ref|YP_001013124.1| - 0.0014 18.7 0.0 0.0032 17.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Toprim_4 PF13662.6 gi|124027804|ref|YP_001013124.1| - 0.0059 17.1 0.9 0.51 10.8 0.0 3.7 4 0 0 4 4 3 1 Toprim domain DZR PF12773.7 gi|124027804|ref|YP_001013124.1| - 0.0061 16.6 0.3 0.011 15.8 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|124027804|ref|YP_001013124.1| - 0.0099 16.0 0.7 0.023 14.8 0.7 1.5 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|124027804|ref|YP_001013124.1| - 0.011 15.1 2.4 0.021 14.2 2.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|124027804|ref|YP_001013124.1| - 0.012 15.6 0.2 0.039 14.0 0.2 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_16 PF13191.6 gi|124027804|ref|YP_001013124.1| - 0.014 15.8 1.0 3.1 8.1 0.0 4.0 4 0 0 4 4 4 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|124027804|ref|YP_001013124.1| - 0.019 14.7 0.0 0.052 13.3 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein ATPase PF06745.13 gi|124027804|ref|YP_001013124.1| - 0.022 14.1 0.1 6.7 6.0 0.0 2.4 2 0 0 2 2 2 0 KaiC TackOD1 PF18551.1 gi|124027804|ref|YP_001013124.1| - 0.066 12.9 1.2 0.15 11.7 1.2 1.5 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 AAA_22 PF13401.6 gi|124027804|ref|YP_001013124.1| - 0.071 13.4 0.6 0.61 10.4 0.2 2.9 3 1 0 3 3 2 0 AAA domain zinc_ribbon_2 PF13240.6 gi|124027804|ref|YP_001013124.1| - 0.086 12.6 1.6 0.14 11.9 1.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|124027804|ref|YP_001013124.1| - 0.17 12.7 0.1 0.28 11.9 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family AAA_19 PF13245.6 gi|124027804|ref|YP_001013124.1| - 0.17 12.2 0.0 0.4 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|124027804|ref|YP_001013124.1| - 0.18 12.3 0.0 0.48 10.9 0.0 1.7 1 0 0 1 1 1 0 ABC transporter DUF35_N PF12172.8 gi|124027804|ref|YP_001013124.1| - 0.24 11.3 2.0 0.46 10.4 2.0 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NRDD PF13597.6 gi|124027804|ref|YP_001013124.1| - 0.25 10.1 0.2 0.4 9.4 0.2 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase COG6 PF06419.11 gi|124027804|ref|YP_001013124.1| - 0.26 9.5 0.5 0.52 8.5 0.5 1.4 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 Rubredoxin_2 PF18073.1 gi|124027804|ref|YP_001013124.1| - 2.9 7.7 4.1 5.7 6.8 4.1 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain NAD_synthase PF02540.17 gi|124027805|ref|YP_001013125.1| - 4e-82 275.0 0.0 4.7e-82 274.8 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|124027805|ref|YP_001013125.1| - 5.1e-08 32.1 0.0 1e-05 24.5 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Sigma70_r3 PF04539.16 gi|124027805|ref|YP_001013125.1| - 0.0075 16.3 0.1 0.023 14.8 0.1 1.9 1 1 0 1 1 1 1 Sigma-70 region 3 QueC PF06508.13 gi|124027805|ref|YP_001013125.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.4 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC HTH_23 PF13384.6 gi|124027805|ref|YP_001013125.1| - 0.02 14.7 1.1 0.32 10.9 0.0 3.3 4 0 0 4 4 4 0 Homeodomain-like domain ATP_bind_3 PF01171.20 gi|124027805|ref|YP_001013125.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 PP-loop family Asn_synthase PF00733.21 gi|124027805|ref|YP_001013125.1| - 0.16 11.6 0.0 0.54 9.9 0.0 1.7 2 0 0 2 2 2 0 Asparagine synthase Carb_kinase PF01256.17 gi|124027806|ref|YP_001013126.1| - 1.2e-52 178.9 0.3 2.1e-52 178.0 0.3 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|124027806|ref|YP_001013126.1| - 1.1e-49 168.6 0.3 3.7e-48 163.6 0.1 2.7 3 0 0 3 3 3 1 YjeF-related protein N-terminus HK PF02110.15 gi|124027806|ref|YP_001013126.1| - 6.5e-08 32.3 0.4 2.6e-07 30.3 0.4 1.9 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|124027806|ref|YP_001013126.1| - 0.00012 21.6 0.0 0.00025 20.5 0.0 1.5 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|124027806|ref|YP_001013126.1| - 0.0046 16.3 1.2 0.013 14.8 0.0 2.0 2 0 0 2 2 2 1 pfkB family carbohydrate kinase TPP_enzyme_C PF02775.21 gi|124027806|ref|YP_001013126.1| - 0.015 15.1 0.9 4.4 7.1 0.0 2.6 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TBP PF00352.21 gi|124027807|ref|YP_001013127.1| - 1.6e-64 213.9 0.6 9.7e-32 108.8 0.1 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|124027807|ref|YP_001013127.1| - 1.2e-06 28.5 0.0 0.044 13.9 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Ribosomal_S30AE PF02482.19 gi|124027807|ref|YP_001013127.1| - 0.0096 16.7 0.2 3.3 8.6 0.0 2.4 2 1 0 2 2 2 2 Sigma 54 modulation protein / S30EA ribosomal protein PucR PF07905.11 gi|124027807|ref|YP_001013127.1| - 0.022 15.1 0.0 0.32 11.3 0.0 2.2 2 1 0 2 2 2 0 Purine catabolism regulatory protein-like family RexA PF15969.5 gi|124027807|ref|YP_001013127.1| - 0.065 12.8 0.1 0.093 12.3 0.1 1.2 1 0 0 1 1 1 0 Intracellular sensor of Lambda phage, Abi component PFK PF00365.20 gi|124027807|ref|YP_001013127.1| - 0.11 11.8 0.0 0.85 8.9 0.0 1.9 2 0 0 2 2 2 0 Phosphofructokinase HMA PF00403.26 gi|124027807|ref|YP_001013127.1| - 0.56 10.7 3.3 6.3 7.3 0.2 3.2 3 1 1 4 4 4 0 Heavy-metal-associated domain CAP18_C PF12153.8 gi|124027807|ref|YP_001013127.1| - 4.7 7.2 6.8 1.4 8.8 0.2 2.8 3 0 0 3 3 3 0 LPS binding domain of CAP18 (C terminal) PDH PF02153.17 gi|124027808|ref|YP_001013128.1| - 0.063 12.3 0.0 0.066 12.2 0.0 1.1 1 0 0 1 1 1 0 Prephenate dehydrogenase LuxT_C PF18285.1 gi|124027809|ref|YP_001013129.1| - 0.094 13.3 0.1 0.33 11.5 0.0 1.9 2 0 0 2 2 2 0 Tetracycline repressor LuxT C-terminal domain LtuB PF17455.2 gi|124027809|ref|YP_001013129.1| - 0.11 13.2 0.7 1.3 9.7 0.0 2.5 3 0 0 3 3 3 0 Late transcription unit B NEL PF14496.6 gi|124027809|ref|YP_001013129.1| - 0.17 11.3 0.2 5.8 6.3 0.0 2.2 2 0 0 2 2 2 0 C-terminal novel E3 ligase, LRR-interacting Usp PF00582.26 gi|124027811|ref|YP_001013131.1| - 2e-21 77.0 0.8 1.6e-19 70.8 0.8 2.1 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|124027811|ref|YP_001013131.1| - 5.7e-07 29.6 0.1 6.6e-07 29.4 0.1 1.0 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Pyr_redox PF00070.27 gi|124027811|ref|YP_001013131.1| - 0.044 14.3 0.0 0.084 13.4 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Peripla_BP_4 PF13407.6 gi|124027811|ref|YP_001013131.1| - 0.088 12.4 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain DNA_pack_C PF02499.15 gi|124027811|ref|YP_001013131.1| - 0.1 11.5 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Probable DNA packing protein, C-terminus Gp_dh_C PF02800.20 gi|124027812|ref|YP_001013132.1| - 4.8e-26 91.2 0.3 6.8e-26 90.7 0.3 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|124027812|ref|YP_001013132.1| - 1.7e-12 47.5 0.0 4e-12 46.3 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|124027812|ref|YP_001013132.1| - 1.4e-06 28.5 0.4 7.3e-06 26.2 0.0 2.4 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|124027812|ref|YP_001013132.1| - 0.00016 22.1 0.0 0.00032 21.1 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|124027812|ref|YP_001013132.1| - 0.00025 21.9 0.1 0.0011 19.8 0.0 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|124027812|ref|YP_001013132.1| - 0.00099 18.5 0.7 0.033 13.5 0.1 2.8 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|124027812|ref|YP_001013132.1| - 0.0048 17.5 0.1 0.021 15.5 0.0 2.1 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain PGK PF00162.19 gi|124027813|ref|YP_001013133.1| - 2e-104 349.6 0.0 2.5e-104 349.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DEAD_assoc PF08494.11 gi|124027814|ref|YP_001013134.1| - 1e-55 188.5 0.3 4.5e-55 186.4 0.1 2.2 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|124027814|ref|YP_001013134.1| - 2.6e-27 95.7 0.0 3.4e-26 92.1 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|124027814|ref|YP_001013134.1| - 1.2e-17 64.3 0.1 3.8e-17 62.6 0.1 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|124027814|ref|YP_001013134.1| - 1.7e-07 31.4 0.0 9.5e-07 29.0 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|124027814|ref|YP_001013134.1| - 0.017 13.9 0.0 0.051 12.3 0.0 1.7 1 1 0 1 1 1 0 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|124027814|ref|YP_001013134.1| - 0.042 14.2 0.0 0.65 10.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain HEM4 PF02602.15 gi|124027814|ref|YP_001013134.1| - 0.057 12.8 0.1 0.19 11.0 0.1 1.9 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD DUF4130 PF13566.6 gi|124027814|ref|YP_001013134.1| - 0.13 12.3 0.1 0.59 10.2 0.0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4130 Ribosomal_S30AE PF02482.19 gi|124027814|ref|YP_001013134.1| - 0.19 12.5 0.8 0.89 10.4 0.3 2.4 3 0 0 3 3 3 0 Sigma 54 modulation protein / S30EA ribosomal protein RHH_1 PF01402.21 gi|124027815|ref|YP_001013135.1| - 3.5e-09 36.3 0.0 8.5e-09 35.0 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|124027815|ref|YP_001013135.1| - 0.0041 17.1 0.2 0.028 14.4 0.2 2.0 1 1 0 1 1 1 1 Ribbon-helix-helix domain RHH_8 PF17723.1 gi|124027815|ref|YP_001013135.1| - 0.064 13.4 0.0 0.065 13.4 0.0 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family DUF2067 PF09840.9 gi|124027815|ref|YP_001013135.1| - 0.065 12.8 0.0 0.065 12.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) Fur_reg_FbpA PF13076.6 gi|124027815|ref|YP_001013135.1| - 0.1 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Fur-regulated basic protein A PDDEXK_1 PF12705.7 gi|124027817|ref|YP_001013137.1| - 2.3e-08 34.3 6.2 1.2e-06 28.7 4.5 2.8 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|124027817|ref|YP_001013137.1| - 0.00028 21.0 0.0 0.00094 19.3 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.6 gi|124027817|ref|YP_001013137.1| - 0.0033 17.8 0.0 0.0056 17.0 0.0 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exo5 PF09810.9 gi|124027817|ref|YP_001013137.1| - 0.089 12.3 0.6 4 6.8 0.0 2.2 2 0 0 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease PHP_C PF13263.6 gi|124027818|ref|YP_001013138.1| - 6.7e-18 64.2 0.3 1.7e-17 62.9 0.2 1.7 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|124027818|ref|YP_001013138.1| - 5.8e-08 33.2 0.0 1.3e-07 32.1 0.0 1.6 1 1 0 1 1 1 1 PHP domain TIM PF00121.18 gi|124027819|ref|YP_001013139.1| - 1.9e-11 43.8 0.0 9.3e-10 38.3 0.0 2.1 1 1 1 2 2 2 2 Triosephosphate isomerase IGPS PF00218.21 gi|124027819|ref|YP_001013139.1| - 3.5e-07 29.7 0.1 1.1e-06 28.0 0.0 1.8 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase ThiG PF05690.14 gi|124027819|ref|YP_001013139.1| - 1.9e-06 27.4 0.8 3.3e-06 26.6 0.8 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|124027819|ref|YP_001013139.1| - 0.048 12.7 1.1 0.071 12.1 0.3 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase tRNA-synt_1b PF00579.25 gi|124027820|ref|YP_001013140.1| - 4.3e-38 131.3 0.0 5.8e-38 130.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) CCG PF02754.16 gi|124027821|ref|YP_001013141.1| - 1.6e-12 47.5 0.0 7.5e-09 35.7 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain LUD_dom PF02589.15 gi|124027822|ref|YP_001013142.1| - 3.6e-55 186.6 0.3 7.9e-55 185.5 0.3 1.6 1 1 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|124027822|ref|YP_001013142.1| - 1.6e-12 47.7 3.3 2.9e-12 46.9 3.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|124027822|ref|YP_001013142.1| - 2.8e-06 26.9 13.2 0.0027 17.5 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|124027822|ref|YP_001013142.1| - 3.4e-06 27.5 4.5 9.2e-06 26.1 4.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124027822|ref|YP_001013142.1| - 6.3e-06 26.0 10.0 0.0014 18.6 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|124027822|ref|YP_001013142.1| - 7.8e-06 26.4 8.0 9.1e-05 23.0 9.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|124027822|ref|YP_001013142.1| - 1.2e-05 25.4 11.4 0.00082 19.4 12.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124027822|ref|YP_001013142.1| - 4.1e-05 23.6 4.3 0.094 12.9 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124027822|ref|YP_001013142.1| - 7.5e-05 23.6 3.3 0.17 12.9 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|124027822|ref|YP_001013142.1| - 0.00017 21.7 8.4 0.00077 19.6 8.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|124027822|ref|YP_001013142.1| - 0.00041 21.2 6.6 0.22 12.4 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124027822|ref|YP_001013142.1| - 0.0017 18.3 11.4 0.023 14.8 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|124027822|ref|YP_001013142.1| - 0.0054 16.5 3.6 0.87 9.4 0.1 2.5 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SKA2 PF16740.5 gi|124027822|ref|YP_001013142.1| - 0.0091 15.8 0.2 0.017 14.9 0.2 1.4 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 2 Fer4_4 PF12800.7 gi|124027822|ref|YP_001013142.1| - 0.059 13.9 12.0 0.31 11.7 2.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|124027822|ref|YP_001013142.1| - 0.29 11.4 4.1 4.4 7.5 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|124027822|ref|YP_001013142.1| - 3.4 8.3 11.1 2.8 8.6 1.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|124027822|ref|YP_001013142.1| - 5.5 8.2 17.2 2.8 9.1 4.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF447 PF04289.12 gi|124027823|ref|YP_001013143.1| - 1.1e-10 41.6 0.0 1.2e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) MAF_flag10 PF01973.18 gi|124027824|ref|YP_001013144.1| - 5.7e-26 91.2 0.0 7.2e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|124027824|ref|YP_001013144.1| - 0.0042 17.1 0.0 0.0081 16.2 0.0 1.4 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain IgG_binding_B PF01378.17 gi|124027824|ref|YP_001013144.1| - 0.016 15.3 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 B domain Creatininase PF02633.14 gi|124027824|ref|YP_001013144.1| - 0.15 11.5 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Creatinine amidohydrolase GHMP_kinases_N PF00288.26 gi|124027825|ref|YP_001013145.1| - 0.00017 21.8 0.5 0.00041 20.5 0.5 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|124027825|ref|YP_001013145.1| - 0.0012 19.2 0.0 0.0094 16.3 0.0 2.3 2 1 0 2 2 2 1 GHMP kinases C terminal Helicase_RecD PF05127.14 gi|124027826|ref|YP_001013146.1| - 2.1e-55 187.3 0.0 6.4e-55 185.7 0.0 1.9 2 0 0 2 2 2 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|124027826|ref|YP_001013146.1| - 1.7e-43 148.7 0.0 3.7e-29 101.7 0.0 3.1 2 1 1 3 3 3 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|124027826|ref|YP_001013146.1| - 5.3e-33 112.8 0.0 1.6e-32 111.3 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|124027826|ref|YP_001013146.1| - 1.4e-06 28.2 0.0 0.00013 21.8 0.0 2.8 2 1 0 2 2 2 1 Possible tRNA binding domain Acetyltransf_1 PF00583.25 gi|124027826|ref|YP_001013146.1| - 3.6e-05 24.0 0.0 0.00011 22.5 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|124027826|ref|YP_001013146.1| - 0.0004 20.7 0.1 0.0027 18.1 0.0 2.5 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain DUF1995 PF09353.10 gi|124027826|ref|YP_001013146.1| - 0.073 13.1 0.0 1.4 8.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1995) tRNA-synt_His PF13393.6 gi|124027827|ref|YP_001013147.1| - 9.1e-70 235.4 0.1 1.3e-69 234.9 0.1 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|124027827|ref|YP_001013147.1| - 3e-14 53.4 0.0 1.8e-13 50.9 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|124027827|ref|YP_001013147.1| - 4.4e-11 42.8 0.4 9.8e-11 41.7 0.4 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|124027827|ref|YP_001013147.1| - 0.00014 21.0 0.1 0.21 10.7 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|124027827|ref|YP_001013147.1| - 0.00072 19.1 0.0 0.013 15.0 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA_int_endo PF01974.17 gi|124027828|ref|YP_001013148.1| - 1.7e-08 34.4 0.0 2.6e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|124027828|ref|YP_001013148.1| - 0.0015 18.1 0.0 0.0037 16.9 0.0 1.6 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|124027828|ref|YP_001013148.1| - 0.13 12.5 0.0 0.21 11.9 0.0 1.3 1 0 0 1 1 1 0 Sen15 protein IF-2B PF01008.17 gi|124027829|ref|YP_001013149.1| - 6.3e-71 238.9 0.2 7.8e-71 238.6 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Phasin_2 PF09361.10 gi|124027830|ref|YP_001013150.1| - 1.7 8.9 6.3 8.4 6.7 1.2 3.0 3 0 0 3 3 3 0 Phasin protein T2SSE PF00437.20 gi|124027831|ref|YP_001013151.1| - 1.1e-42 146.0 0.0 1.6e-42 145.4 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_21 PF13304.6 gi|124027831|ref|YP_001013151.1| - 0.0006 19.7 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|124027831|ref|YP_001013151.1| - 0.0023 17.6 0.0 0.005 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|124027831|ref|YP_001013151.1| - 0.0039 17.7 0.0 0.0074 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|124027831|ref|YP_001013151.1| - 0.0055 17.1 0.0 0.015 15.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|124027831|ref|YP_001013151.1| - 0.025 14.8 0.0 0.073 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|124027831|ref|YP_001013151.1| - 0.053 12.9 0.0 0.096 12.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family SRPRB PF09439.10 gi|124027831|ref|YP_001013151.1| - 0.061 12.8 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 gi|124027831|ref|YP_001013151.1| - 0.065 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.6 gi|124027831|ref|YP_001013151.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|124027831|ref|YP_001013151.1| - 0.13 12.8 0.0 0.73 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|124027831|ref|YP_001013151.1| - 0.15 12.6 0.0 0.26 11.8 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 gi|124027831|ref|YP_001013151.1| - 0.16 12.1 0.0 0.31 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|124027831|ref|YP_001013151.1| - 0.18 11.0 0.0 0.33 10.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.21 gi|124027831|ref|YP_001013151.1| - 0.19 11.1 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|124027831|ref|YP_001013151.1| - 0.23 11.0 0.0 0.38 10.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region ASH PF15780.5 gi|124027832|ref|YP_001013152.1| - 0.025 14.8 0.1 0.039 14.2 0.1 1.2 1 0 0 1 1 1 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Topo-VIb_trans PF09239.11 gi|124027833|ref|YP_001013153.1| - 4e-62 208.8 0.0 6.7e-62 208.0 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|124027833|ref|YP_001013153.1| - 6e-12 46.1 0.0 1.3e-11 45.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|124027833|ref|YP_001013153.1| - 4.9e-11 42.6 0.0 8.6e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|124027833|ref|YP_001013153.1| - 2.1e-05 23.5 0.1 0.00011 21.2 0.0 2.1 2 1 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.22 gi|124027833|ref|YP_001013153.1| - 0.046 14.1 0.0 0.14 12.5 0.0 1.8 2 0 0 2 2 2 0 Ribosomal protein S13/S18 HHH PF00633.23 gi|124027833|ref|YP_001013153.1| - 0.11 12.5 0.0 0.31 11.0 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif TP6A_N PF04406.14 gi|124027834|ref|YP_001013154.1| - 7e-23 80.4 0.1 1.2e-22 79.6 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|124027834|ref|YP_001013154.1| - 0.03 14.2 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) GTP_EFTU_D4 PF14578.6 gi|124027834|ref|YP_001013154.1| - 0.068 13.1 0.2 0.16 11.9 0.2 1.5 1 0 0 1 1 1 0 Elongation factor Tu domain 4 DeoC PF01791.9 gi|124027835|ref|YP_001013155.1| - 1.1e-08 35.0 0.0 1.3e-06 28.3 0.0 2.2 1 1 1 2 2 2 2 DeoC/LacD family aldolase Glu_synthase PF01645.17 gi|124027835|ref|YP_001013155.1| - 0.0017 17.5 0.0 0.0036 16.5 0.0 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase NMO PF03060.15 gi|124027835|ref|YP_001013155.1| - 0.12 11.7 0.3 0.28 10.5 0.1 1.6 2 0 0 2 2 2 0 Nitronate monooxygenase ASCH PF04266.14 gi|124027836|ref|YP_001013156.1| - 2.3e-19 69.9 0.1 3.8e-19 69.3 0.1 1.3 1 0 0 1 1 1 1 ASCH domain ORC4_C PF14629.6 gi|124027836|ref|YP_001013156.1| - 0.036 13.4 0.2 0.054 12.9 0.2 1.3 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus NTP_transf_3 PF12804.7 gi|124027837|ref|YP_001013157.1| - 1.2e-09 38.7 0.0 3.4e-09 37.3 0.0 1.6 1 1 1 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|124027837|ref|YP_001013157.1| - 9.9e-08 31.4 0.3 0.00016 21.2 0.4 4.2 2 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) SIS PF01380.22 gi|124027838|ref|YP_001013158.1| - 2.2e-42 144.0 1.9 2e-27 95.6 1.4 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|124027838|ref|YP_001013158.1| - 6.8e-22 78.1 0.0 1.4e-21 77.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|124027838|ref|YP_001013158.1| - 1.8e-17 63.4 0.0 3.2e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|124027838|ref|YP_001013158.1| - 0.00012 21.1 0.0 0.00022 20.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|124027838|ref|YP_001013158.1| - 0.00057 19.9 1.2 0.0023 17.9 0.2 2.4 1 1 1 2 2 2 1 SIS domain tRNA-Thr_ED PF08915.11 gi|124027839|ref|YP_001013159.1| - 7.5e-52 175.0 0.1 1.4e-51 174.1 0.1 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|124027839|ref|YP_001013159.1| - 1.1e-19 70.4 1.2 1.7e-19 69.8 0.2 1.9 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|124027839|ref|YP_001013159.1| - 2.5e-17 63.4 0.1 5.9e-17 62.2 0.1 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Sulfakinin PF08257.11 gi|124027839|ref|YP_001013159.1| - 0.074 13.1 0.9 0.22 11.6 0.9 1.9 1 0 0 1 1 1 0 Sulfakinin family Rad51 PF08423.11 gi|124027840|ref|YP_001013160.1| - 2.4e-93 312.1 0.0 2.9e-93 311.8 0.0 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|124027840|ref|YP_001013160.1| - 7.2e-14 51.9 0.1 1.1e-13 51.2 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|124027840|ref|YP_001013160.1| - 2e-13 50.7 0.9 6.2e-13 49.1 0.9 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|124027840|ref|YP_001013160.1| - 1.2e-09 37.9 0.0 2.1e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|124027840|ref|YP_001013160.1| - 4.4e-09 36.2 0.0 7.5e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cdd1 PF11731.8 gi|124027840|ref|YP_001013160.1| - 3.7e-05 23.9 0.0 6.9e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|124027840|ref|YP_001013160.1| - 4e-05 23.4 0.0 0.00031 20.5 0.0 2.4 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|124027840|ref|YP_001013160.1| - 5.4e-05 22.8 0.4 0.0028 17.4 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|124027840|ref|YP_001013160.1| - 9.4e-05 22.4 0.3 0.00033 20.7 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|124027840|ref|YP_001013160.1| - 0.005 17.4 0.9 0.022 15.4 0.2 2.2 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 gi|124027840|ref|YP_001013160.1| - 0.016 15.5 0.4 4.1 7.7 0.2 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif AAA_18 PF13238.6 gi|124027840|ref|YP_001013160.1| - 0.02 15.4 1.0 0.06 13.9 0.1 2.4 2 1 0 2 2 1 0 AAA domain IMS_HHH PF11798.8 gi|124027840|ref|YP_001013160.1| - 0.059 13.7 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif BAF PF02961.14 gi|124027840|ref|YP_001013160.1| - 0.081 13.4 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Barrier to autointegration factor DUF4332 PF14229.6 gi|124027840|ref|YP_001013160.1| - 0.084 13.1 0.3 0.46 10.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) AAA_22 PF13401.6 gi|124027840|ref|YP_001013160.1| - 0.091 13.0 0.0 0.23 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain Arc_PepC_II PF06847.11 gi|124027842|ref|YP_001013162.1| - 1.7e-08 34.9 0.0 3.6e-08 33.8 0.0 1.6 1 1 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|124027842|ref|YP_001013162.1| - 7.1e-06 26.4 7.7 1.4e-05 25.4 7.7 1.5 1 0 0 1 1 1 1 Type IV leader peptidase family HIT PF01230.23 gi|124027843|ref|YP_001013163.1| - 8.6e-15 55.3 0.0 1.5e-14 54.5 0.0 1.4 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|124027843|ref|YP_001013163.1| - 8.7e-09 35.9 0.1 1.5e-08 35.1 0.1 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|124027843|ref|YP_001013163.1| - 1.6e-06 28.0 0.3 2.9e-06 27.2 0.3 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF3418 PF11898.8 gi|124027844|ref|YP_001013164.1| - 0.00055 18.7 0.8 0.0006 18.6 0.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3418) DUF4777 PF16007.5 gi|124027845|ref|YP_001013165.1| - 0.00014 22.0 0.0 0.00022 21.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4777) HARE-HTH PF05066.13 gi|124027845|ref|YP_001013165.1| - 0.00063 20.1 0.0 0.0029 17.9 0.0 1.8 1 1 1 2 2 2 1 HB1, ASXL, restriction endonuclease HTH domain TFIIE_beta PF02186.15 gi|124027845|ref|YP_001013165.1| - 0.0025 18.1 0.0 0.0027 18.0 0.0 1.1 1 0 0 1 1 1 1 TFIIE beta subunit core domain Lant_dehydr_N PF04738.13 gi|124027845|ref|YP_001013165.1| - 0.011 13.9 0.0 0.012 13.8 0.0 1.0 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus HTH_IclR PF09339.10 gi|124027845|ref|YP_001013165.1| - 0.072 12.9 0.0 3.6 7.5 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain Arm-DNA-bind_3 PF13356.6 gi|124027846|ref|YP_001013166.1| - 0.05 14.0 0.1 0.074 13.4 0.1 1.5 1 1 0 1 1 1 0 Arm DNA-binding domain CbtA_toxin PF06755.12 gi|124027846|ref|YP_001013166.1| - 0.12 12.4 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 CbtA_toxin of type IV toxin-antitoxin system PLN_propep PF16485.5 gi|124027846|ref|YP_001013166.1| - 0.19 11.5 0.1 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Protealysin propeptide zf-C2H2_6 PF13912.6 gi|124027847|ref|YP_001013167.1| - 0.12 12.4 0.7 0.42 10.7 0.0 2.0 2 0 0 2 2 2 0 C2H2-type zinc finger DEAD PF00270.29 gi|124027848|ref|YP_001013168.1| - 9.7e-33 113.4 0.0 4.1e-32 111.3 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|124027848|ref|YP_001013168.1| - 5.8e-16 58.8 0.0 4.4e-14 52.8 0.0 2.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|124027848|ref|YP_001013168.1| - 6e-08 32.9 0.0 6.7e-07 29.5 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD_assoc PF08494.11 gi|124027848|ref|YP_001013168.1| - 1.9e-07 31.1 0.3 0.0053 16.6 0.1 2.9 2 1 1 3 3 3 2 DEAD/H associated AAA_19 PF13245.6 gi|124027848|ref|YP_001013168.1| - 0.0032 17.8 0.0 0.015 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain SNF2_N PF00176.23 gi|124027848|ref|YP_001013168.1| - 0.0033 16.2 0.0 0.0058 15.4 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_11 PF13086.6 gi|124027848|ref|YP_001013168.1| - 0.16 11.8 0.0 0.68 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain PQQ PF01011.21 gi|124027848|ref|YP_001013168.1| - 0.5 10.4 3.5 0.98 9.5 0.1 2.6 2 0 0 2 2 2 0 PQQ enzyme repeat Alba PF01918.21 gi|124027850|ref|YP_001013170.1| - 2.4e-14 52.9 0.2 3.4e-14 52.4 0.2 1.2 1 0 0 1 1 1 1 Alba DUF4010 PF13194.6 gi|124027851|ref|YP_001013171.1| - 8.9e-40 136.6 23.4 8.9e-40 136.6 23.4 2.6 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|124027851|ref|YP_001013171.1| - 1.6e-18 67.2 14.1 1.6e-18 67.2 14.1 3.1 2 1 0 2 2 2 1 MgtC family Unstab_antitox PF09720.10 gi|124027852|ref|YP_001013172.1| - 0.012 15.6 0.2 4.3 7.5 0.0 2.3 2 0 0 2 2 2 0 Putative addiction module component Metallophos_2 PF12850.7 gi|124027853|ref|YP_001013173.1| - 0.0011 19.1 0.1 0.0049 17.1 0.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Cob_adeno_trans PF01923.18 gi|124027854|ref|YP_001013174.1| - 3.9e-40 137.7 0.0 4.4e-40 137.5 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase DUF1016_N PF17761.1 gi|124027854|ref|YP_001013174.1| - 0.13 12.4 0.0 0.3 11.3 0.0 1.5 1 1 1 2 2 2 0 DUF1016 N-terminal domain TPP_enzyme_C PF02775.21 gi|124027855|ref|YP_001013175.1| - 5.3e-32 110.7 0.3 1e-31 109.8 0.3 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|124027855|ref|YP_001013175.1| - 1.1e-23 83.1 0.0 2.5e-23 82.0 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Lipase_GDSL_2 PF13472.6 gi|124027855|ref|YP_001013175.1| - 0.14 12.6 0.0 0.61 10.5 0.0 2.0 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Acetyltransf_1 PF00583.25 gi|124027856|ref|YP_001013176.1| - 7.9e-26 90.6 0.2 1e-25 90.3 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|124027856|ref|YP_001013176.1| - 8e-18 64.7 0.3 1.3e-17 63.9 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|124027856|ref|YP_001013176.1| - 4.9e-15 55.6 0.1 8.6e-15 54.8 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|124027856|ref|YP_001013176.1| - 1.8e-11 43.8 0.2 6.2e-11 42.1 0.1 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|124027856|ref|YP_001013176.1| - 9.8e-09 35.0 1.9 3e-08 33.5 0.0 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|124027856|ref|YP_001013176.1| - 1.3e-07 31.8 0.1 3.1e-07 30.6 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|124027856|ref|YP_001013176.1| - 2e-07 31.1 0.1 3.3e-07 30.4 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|124027856|ref|YP_001013176.1| - 2.9e-06 28.0 0.2 5.7e-06 27.1 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|124027856|ref|YP_001013176.1| - 0.00075 19.0 0.0 0.00099 18.6 0.0 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase GNAT_acetyltran PF12746.7 gi|124027856|ref|YP_001013176.1| - 0.0053 16.4 0.0 0.008 15.8 0.0 1.4 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|124027856|ref|YP_001013176.1| - 0.0088 16.2 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_18 PF18014.1 gi|124027856|ref|YP_001013176.1| - 0.013 15.3 0.0 0.36 10.7 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain PK PF00224.21 gi|124027857|ref|YP_001013177.1| - 9.7e-90 300.9 0.0 1.7e-89 300.2 0.0 1.3 2 0 0 2 2 2 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|124027857|ref|YP_001013177.1| - 4.7e-13 49.4 0.1 4.4e-12 46.3 0.0 2.4 2 1 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|124027857|ref|YP_001013177.1| - 0.00048 19.3 0.3 0.00083 18.5 0.3 1.4 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family UreE_N PF02814.15 gi|124027857|ref|YP_001013177.1| - 0.059 13.0 0.3 0.36 10.4 0.1 2.2 2 0 0 2 2 2 0 UreE urease accessory protein, N-terminal domain HTH_38 PF13936.6 gi|124027858|ref|YP_001013178.1| - 5.8e-17 61.2 0.2 1e-09 38.0 0.3 2.1 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|124027858|ref|YP_001013178.1| - 3.4e-15 55.7 1.2 3.5e-07 30.0 0.3 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|124027858|ref|YP_001013178.1| - 8e-13 47.8 0.0 1.6e-05 24.5 0.0 2.4 1 1 1 2 2 2 2 Homeodomain-like domain HTH_20 PF12840.7 gi|124027858|ref|YP_001013178.1| - 1.4e-11 44.3 0.0 9.3e-06 25.6 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 gi|124027858|ref|YP_001013178.1| - 7.6e-11 41.9 0.4 2.1e-07 30.9 0.3 2.1 2 0 0 2 2 2 2 Winged helix-turn helix HTH_28 PF13518.6 gi|124027858|ref|YP_001013178.1| - 1.7e-10 40.8 0.3 4e-05 23.7 0.0 2.3 2 1 0 2 2 2 2 Helix-turn-helix domain HTH_7 PF02796.15 gi|124027858|ref|YP_001013178.1| - 4.7e-10 39.4 0.1 7.6e-06 25.9 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|124027858|ref|YP_001013178.1| - 4.3e-09 36.2 0.0 1e-05 25.3 0.0 2.3 1 1 0 2 2 2 2 HTH domain Sigma70_r4_2 PF08281.12 gi|124027858|ref|YP_001013178.1| - 6.3e-09 35.4 0.7 0.00043 19.9 0.3 2.2 2 0 0 2 2 2 2 Sigma-70, region 4 Terminase_5 PF06056.12 gi|124027858|ref|YP_001013178.1| - 1.3e-08 34.5 0.1 0.00022 21.0 0.1 2.3 2 1 0 2 2 2 2 Putative ATPase subunit of terminase (gpP-like) HTH_24 PF13412.6 gi|124027858|ref|YP_001013178.1| - 1.6e-08 34.0 0.3 0.00013 21.4 0.0 2.8 3 1 1 4 4 3 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|124027858|ref|YP_001013178.1| - 1e-07 31.7 0.1 0.00071 19.4 0.0 2.2 1 1 1 2 2 2 2 MarR family HTH_40 PF14493.6 gi|124027858|ref|YP_001013178.1| - 2e-07 31.4 0.0 0.0089 16.5 0.0 2.1 1 1 1 2 2 2 2 Helix-turn-helix domain HTH_IclR PF09339.10 gi|124027858|ref|YP_001013178.1| - 4.6e-07 29.5 0.0 0.015 15.1 0.0 2.2 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR PF01047.22 gi|124027858|ref|YP_001013178.1| - 1.8e-06 27.8 0.0 0.0023 17.8 0.0 2.4 2 1 0 2 2 2 1 MarR family GerE PF00196.19 gi|124027858|ref|YP_001013178.1| - 3.1e-06 26.6 0.0 0.079 12.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|124027858|ref|YP_001013178.1| - 7.8e-06 25.3 2.7 0.0014 18.1 0.3 2.8 3 1 0 3 3 2 1 Sigma-70, region 4 DprA_WH PF17782.1 gi|124027858|ref|YP_001013178.1| - 2.8e-05 24.1 0.0 0.0001 22.4 0.0 1.8 2 0 0 2 2 2 1 DprA winged helix domain GntR PF00392.21 gi|124027858|ref|YP_001013178.1| - 3.2e-05 23.5 0.2 0.0024 17.5 0.0 2.8 2 1 1 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_Tnp_1 PF01527.20 gi|124027858|ref|YP_001013178.1| - 3.4e-05 24.1 0.1 0.088 13.1 0.0 2.2 1 1 1 2 2 2 2 Transposase HTH_36 PF13730.6 gi|124027858|ref|YP_001013178.1| - 3.5e-05 23.7 0.1 0.0055 16.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|124027858|ref|YP_001013178.1| - 4.9e-05 23.1 0.0 9.5e-05 22.2 0.0 1.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|124027858|ref|YP_001013178.1| - 6.1e-05 23.1 0.0 0.0022 18.1 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain CENP-B_N PF04218.13 gi|124027858|ref|YP_001013178.1| - 9.6e-05 21.9 0.0 0.29 10.8 0.0 2.2 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 gi|124027858|ref|YP_001013178.1| - 0.00012 21.9 0.0 0.11 12.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|124027858|ref|YP_001013178.1| - 0.00025 21.5 0.2 0.091 13.3 0.1 2.2 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_22 PF13309.6 gi|124027858|ref|YP_001013178.1| - 0.00039 20.4 0.8 1.3 9.2 0.0 3.3 2 2 0 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|124027858|ref|YP_001013178.1| - 0.0004 20.7 0.1 0.003 17.9 0.0 2.0 1 1 1 2 2 2 1 Transcriptional regulator RPA_C PF08784.11 gi|124027858|ref|YP_001013178.1| - 0.00052 20.6 0.0 0.053 14.2 0.0 2.1 2 0 0 2 2 2 1 Replication protein A C terminal IF2_N PF04760.15 gi|124027858|ref|YP_001013178.1| - 0.00055 19.7 0.3 0.11 12.4 0.0 2.9 3 1 1 4 4 3 1 Translation initiation factor IF-2, N-terminal region HTH_Crp_2 PF13545.6 gi|124027858|ref|YP_001013178.1| - 0.00069 19.5 0.1 0.0069 16.3 0.1 2.1 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain TetR_N PF00440.23 gi|124027858|ref|YP_001013178.1| - 0.0008 19.1 0.0 1.7 8.5 0.1 2.2 2 0 0 2 2 2 2 Bacterial regulatory proteins, tetR family Sigma70_ECF PF07638.11 gi|124027858|ref|YP_001013178.1| - 0.00098 19.1 0.0 0.5 10.2 0.0 2.1 1 1 1 2 2 2 1 ECF sigma factor TnsD PF15978.5 gi|124027858|ref|YP_001013178.1| - 0.001 18.2 0.1 0.016 14.2 0.1 1.8 1 1 1 2 2 2 1 Tn7-like transposition protein D HTH_AsnC-type PF13404.6 gi|124027858|ref|YP_001013178.1| - 0.0013 18.5 0.0 0.45 10.4 0.0 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain PadR PF03551.14 gi|124027858|ref|YP_001013178.1| - 0.0016 18.4 1.7 0.011 15.7 0.2 2.4 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family Phage_antitermQ PF06530.12 gi|124027858|ref|YP_001013178.1| - 0.0017 18.3 0.2 1.8 8.5 0.1 2.0 2 0 0 2 2 2 2 Phage antitermination protein Q GcrA PF07750.11 gi|124027858|ref|YP_001013178.1| - 0.0023 18.4 0.0 0.35 11.3 0.0 2.0 1 1 1 2 2 2 1 GcrA cell cycle regulator HTH_41 PF14502.6 gi|124027858|ref|YP_001013178.1| - 0.0023 17.6 0.0 0.0083 15.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|124027858|ref|YP_001013178.1| - 0.0025 18.0 0.8 0.51 10.6 0.2 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|124027858|ref|YP_001013178.1| - 0.003 17.3 0.1 0.0067 16.2 0.0 1.6 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain FeoC PF09012.10 gi|124027858|ref|YP_001013178.1| - 0.0052 16.8 0.0 0.013 15.5 0.0 1.7 2 0 0 2 2 1 1 FeoC like transcriptional regulator Bac_DnaA_C PF08299.11 gi|124027858|ref|YP_001013178.1| - 0.0052 16.8 0.0 1.3 9.1 0.0 2.3 2 1 0 2 2 2 1 Bacterial dnaA protein helix-turn-helix HTH_10 PF04967.12 gi|124027858|ref|YP_001013178.1| - 0.006 16.4 0.1 6.6 6.6 0.0 2.8 3 0 0 3 3 3 0 HTH DNA binding domain FUR PF01475.19 gi|124027858|ref|YP_001013178.1| - 0.006 16.7 0.2 0.019 15.1 0.0 1.8 1 1 1 2 2 2 1 Ferric uptake regulator family RNA_pol_Rpc34 PF05158.12 gi|124027858|ref|YP_001013178.1| - 0.0072 15.7 0.2 0.0098 15.3 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HemN_C PF06969.16 gi|124027858|ref|YP_001013178.1| - 0.0081 16.2 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 HemN C-terminal domain HTH_6 PF01418.17 gi|124027858|ref|YP_001013178.1| - 0.012 15.6 0.0 2.2 8.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_15 PF12324.8 gi|124027858|ref|YP_001013178.1| - 0.013 15.4 0.0 3.8 7.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase BLACT_WH PF17778.1 gi|124027858|ref|YP_001013178.1| - 0.017 15.1 0.9 0.39 10.7 0.0 2.6 3 0 0 3 3 2 0 Beta-lactamase associated winged helix domain HTH_Tnp_IS630 PF01710.16 gi|124027858|ref|YP_001013178.1| - 0.02 14.9 0.5 0.058 13.4 0.5 1.6 1 1 0 1 1 1 0 Transposase HTH_46 PF15977.5 gi|124027858|ref|YP_001013178.1| - 0.021 14.9 0.1 0.03 14.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding DUF2250 PF10007.9 gi|124027858|ref|YP_001013178.1| - 0.028 14.5 0.4 0.052 13.7 0.1 1.6 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.16 gi|124027858|ref|YP_001013178.1| - 0.029 14.1 0.0 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain SpoIIID PF12116.8 gi|124027858|ref|YP_001013178.1| - 0.036 14.2 0.0 2.8 8.1 0.0 2.1 2 0 0 2 2 2 0 Stage III sporulation protein D UPF0122 PF04297.14 gi|124027858|ref|YP_001013178.1| - 0.038 14.2 0.0 1.1 9.6 0.0 2.0 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_Tnp_ISL3 PF13542.6 gi|124027858|ref|YP_001013178.1| - 0.041 13.3 0.0 4.2 6.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_35 PF13693.6 gi|124027858|ref|YP_001013178.1| - 0.044 13.8 0.0 3.1 7.9 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.11 gi|124027858|ref|YP_001013178.1| - 0.05 13.2 0.0 2.6 7.7 0.0 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain TBPIP PF07106.13 gi|124027858|ref|YP_001013178.1| - 0.076 13.0 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain Penicillinase_R PF03965.16 gi|124027858|ref|YP_001013178.1| - 0.078 13.3 0.2 0.97 9.8 0.2 2.0 1 1 1 2 2 2 0 Penicillinase repressor HTH_34 PF13601.6 gi|124027858|ref|YP_001013178.1| - 0.081 13.1 0.0 0.23 11.7 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain AsnC_trans_reg PF01037.21 gi|124027859|ref|YP_001013179.1| - 3e-08 33.5 0.4 3.8e-08 33.2 0.4 1.3 1 1 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|124027859|ref|YP_001013179.1| - 0.0093 15.9 0.2 0.011 15.7 0.2 1.2 1 0 0 1 1 1 1 GYD domain CinA_KH PF18146.1 gi|124027859|ref|YP_001013179.1| - 0.046 13.9 0.1 0.053 13.7 0.1 1.1 1 0 0 1 1 1 0 Damage-inducible protein CinA KH domain DUF432 PF04254.13 gi|124027860|ref|YP_001013180.1| - 1.9e-33 115.3 0.0 2.7e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) RHH_4 PF13467.6 gi|124027862|ref|YP_001013182.1| - 0.077 12.9 0.1 2 8.4 0.0 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|124027863|ref|YP_001013183.1| - 0.018 15.0 0.8 0.044 13.7 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family RHH_4 PF13467.6 gi|124027863|ref|YP_001013183.1| - 0.019 14.8 0.7 0.15 11.9 0.0 2.3 2 1 0 2 2 2 0 Ribbon-helix-helix domain CarboxypepD_reg PF13620.6 gi|124027865|ref|YP_001013185.1| - 4e-12 46.2 8.1 8.1e-12 45.3 8.1 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF1664 PF07889.12 gi|124027865|ref|YP_001013185.1| - 3.9e-11 43.1 21.4 2.8e-05 24.2 6.0 3.3 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) CarbopepD_reg_2 PF13715.6 gi|124027865|ref|YP_001013185.1| - 5.4e-10 39.1 3.0 1.5e-09 37.7 3.0 1.8 1 0 0 1 1 1 1 CarboxypepD_reg-like domain Baculo_PEP_C PF04513.12 gi|124027865|ref|YP_001013185.1| - 2.6e-09 37.3 35.9 0.00085 19.4 8.5 3.1 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.11 gi|124027865|ref|YP_001013185.1| - 3.4e-08 32.7 30.2 7.4e-07 28.4 17.6 2.4 1 1 2 3 3 3 3 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|124027865|ref|YP_001013185.1| - 1.9e-07 31.2 29.4 6.8e-05 22.9 16.6 3.4 1 1 2 3 3 3 2 TPR/MLP1/MLP2-like protein IFT57 PF10498.9 gi|124027865|ref|YP_001013185.1| - 2.1e-07 30.3 23.2 3.5e-05 23.0 6.4 2.1 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 Filament PF00038.21 gi|124027865|ref|YP_001013185.1| - 4.1e-07 29.9 21.7 1.7e-06 27.8 9.4 2.6 1 1 1 2 2 2 1 Intermediate filament protein Prominin PF05478.11 gi|124027865|ref|YP_001013185.1| - 5e-07 28.1 17.3 7.7e-07 27.5 17.3 1.2 1 0 0 1 1 1 1 Prominin Apolipoprotein PF01442.18 gi|124027865|ref|YP_001013185.1| - 6.7e-07 29.4 23.3 6.7e-05 22.8 23.0 2.2 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain SlyX PF04102.12 gi|124027865|ref|YP_001013185.1| - 7.7e-07 29.6 26.1 1.6e-05 25.4 1.9 4.6 2 1 2 4 4 4 1 SlyX TMPIT PF07851.13 gi|124027865|ref|YP_001013185.1| - 1.8e-06 27.4 13.3 0.0005 19.4 5.2 2.3 2 0 0 2 2 2 2 TMPIT-like protein Prefoldin PF02996.17 gi|124027865|ref|YP_001013185.1| - 3.4e-06 27.0 29.6 0.079 12.9 4.7 5.6 1 1 6 7 7 7 2 Prefoldin subunit KASH_CCD PF14662.6 gi|124027865|ref|YP_001013185.1| - 3.5e-06 27.0 26.8 2.4e-05 24.3 22.0 2.6 1 1 1 2 2 2 1 Coiled-coil region of CCDC155 or KASH Fib_alpha PF08702.10 gi|124027865|ref|YP_001013185.1| - 5.9e-06 26.5 26.9 0.0027 17.9 15.6 2.1 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family Atg14 PF10186.9 gi|124027865|ref|YP_001013185.1| - 7e-06 25.3 24.3 0.00096 18.3 14.0 2.1 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 EzrA PF06160.12 gi|124027865|ref|YP_001013185.1| - 7.5e-06 24.4 7.3 7.5e-06 24.4 7.3 2.4 2 1 1 3 3 2 1 Septation ring formation regulator, EzrA NPV_P10 PF05531.12 gi|124027865|ref|YP_001013185.1| - 8.4e-06 26.2 27.3 0.074 13.5 3.9 4.4 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein DUF4164 PF13747.6 gi|124027865|ref|YP_001013185.1| - 1.8e-05 24.9 21.3 0.014 15.7 2.8 3.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4164) AAA_13 PF13166.6 gi|124027865|ref|YP_001013185.1| - 1.9e-05 23.5 19.8 2.8e-05 23.0 19.8 1.2 1 0 0 1 1 1 1 AAA domain ABC_tran_CTD PF16326.5 gi|124027865|ref|YP_001013185.1| - 2e-05 24.7 28.2 0.073 13.3 7.9 4.2 1 1 3 4 4 4 2 ABC transporter C-terminal domain Macoilin PF09726.9 gi|124027865|ref|YP_001013185.1| - 2.2e-05 23.3 5.5 2.9e-05 22.9 5.5 1.2 1 0 0 1 1 1 1 Macoilin family CLZ PF16526.5 gi|124027865|ref|YP_001013185.1| - 2.2e-05 24.7 23.0 0.27 11.6 3.7 4.3 2 1 2 4 4 4 3 C-terminal leucine zipper domain of cyclic nucleotide-gated channels APG6_N PF17675.1 gi|124027865|ref|YP_001013185.1| - 2.3e-05 24.9 29.7 0.006 17.1 12.2 2.9 1 1 1 2 2 2 1 Apg6 coiled-coil region ATG16 PF08614.11 gi|124027865|ref|YP_001013185.1| - 2.5e-05 24.6 29.0 0.0079 16.4 10.0 2.8 1 1 2 3 3 3 3 Autophagy protein 16 (ATG16) Golgin_A5 PF09787.9 gi|124027865|ref|YP_001013185.1| - 3.1e-05 23.6 22.9 0.00021 20.9 5.0 2.1 1 1 1 2 2 2 1 Golgin subfamily A member 5 DUF3584 PF12128.8 gi|124027865|ref|YP_001013185.1| - 3.7e-05 21.5 22.7 0.0039 14.8 5.9 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.22 gi|124027865|ref|YP_001013185.1| - 4.1e-05 23.8 26.1 0.025 14.8 14.3 3.6 1 1 3 4 4 4 2 Seryl-tRNA synthetase N-terminal domain TMF_TATA_bd PF12325.8 gi|124027865|ref|YP_001013185.1| - 4.2e-05 23.7 25.0 0.016 15.4 4.9 3.3 1 1 2 3 3 3 2 TATA element modulatory factor 1 TATA binding Med9 PF07544.13 gi|124027865|ref|YP_001013185.1| - 4.8e-05 23.4 20.4 0.044 13.9 7.5 4.3 1 1 3 4 4 4 2 RNA polymerase II transcription mediator complex subunit 9 HMMR_N PF15905.5 gi|124027865|ref|YP_001013185.1| - 6e-05 22.7 42.5 0.00069 19.2 14.0 2.3 1 1 1 2 2 2 2 Hyaluronan mediated motility receptor N-terminal FlaC_arch PF05377.11 gi|124027865|ref|YP_001013185.1| - 6.5e-05 23.3 25.3 0.29 11.5 0.1 5.9 2 1 3 5 5 5 1 Flagella accessory protein C (FlaC) MscS_porin PF12795.7 gi|124027865|ref|YP_001013185.1| - 6.5e-05 22.6 13.9 6.5e-05 22.6 13.9 2.2 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain Prefoldin_2 PF01920.20 gi|124027865|ref|YP_001013185.1| - 6.8e-05 22.8 27.9 0.87 9.6 0.6 5.3 1 1 3 4 4 4 0 Prefoldin subunit DUF948 PF06103.11 gi|124027865|ref|YP_001013185.1| - 9.6e-05 22.6 1.1 9.6e-05 22.6 1.1 4.9 3 1 2 5 5 3 3 Bacterial protein of unknown function (DUF948) MG2 PF01835.19 gi|124027865|ref|YP_001013185.1| - 9.7e-05 22.8 0.1 0.0029 18.0 0.0 3.3 2 2 0 2 2 1 1 MG2 domain Bacillus_HBL PF05791.11 gi|124027865|ref|YP_001013185.1| - 0.00011 22.1 25.3 0.00016 21.6 3.6 3.3 1 1 1 2 2 2 1 Bacillus haemolytic enterotoxin (HBL) Rootletin PF15035.6 gi|124027865|ref|YP_001013185.1| - 0.00013 22.1 20.5 0.00048 20.2 1.4 2.2 1 1 1 2 2 2 1 Ciliary rootlet component, centrosome cohesion ZapB PF06005.12 gi|124027865|ref|YP_001013185.1| - 0.00014 22.2 31.5 0.55 10.7 10.9 4.0 2 1 1 3 3 3 1 Cell division protein ZapB CCDC144C PF14915.6 gi|124027865|ref|YP_001013185.1| - 0.00014 21.1 25.0 0.00032 19.9 25.0 1.4 1 1 0 1 1 1 1 CCDC144C protein coiled-coil region Fez1 PF06818.15 gi|124027865|ref|YP_001013185.1| - 0.00015 22.3 19.0 0.014 15.9 10.6 2.2 1 1 1 2 2 2 2 Fez1 HAUS-augmin3 PF14932.6 gi|124027865|ref|YP_001013185.1| - 0.00015 21.4 26.9 0.00021 21.0 10.8 2.2 1 1 1 2 2 2 1 HAUS augmin-like complex subunit 3 DUF4795 PF16043.5 gi|124027865|ref|YP_001013185.1| - 0.00016 21.4 24.6 0.034 13.8 24.6 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4795) HIP1_clath_bdg PF16515.5 gi|124027865|ref|YP_001013185.1| - 0.00023 21.7 25.4 0.00043 20.8 4.8 2.7 1 1 2 3 3 3 1 Clathrin-binding domain of Huntingtin-interacting protein 1 OmpH PF03938.14 gi|124027865|ref|YP_001013185.1| - 0.00024 21.4 22.7 4.8e+02 1.0 22.7 3.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) CENP-F_leu_zip PF10473.9 gi|124027865|ref|YP_001013185.1| - 0.00028 20.9 27.3 0.17 11.9 11.1 3.2 1 1 2 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.8 gi|124027865|ref|YP_001013185.1| - 0.00035 20.7 26.7 0.0094 16.1 7.4 2.9 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding Tektin PF03148.14 gi|124027865|ref|YP_001013185.1| - 0.00035 19.5 22.8 0.0015 17.4 16.7 2.9 1 1 1 2 2 2 1 Tektin family AIP3 PF03915.13 gi|124027865|ref|YP_001013185.1| - 0.00036 19.7 17.8 0.00059 19.0 17.8 1.3 1 0 0 1 1 1 1 Actin interacting protein 3 Jnk-SapK_ap_N PF09744.9 gi|124027865|ref|YP_001013185.1| - 0.00037 20.8 21.9 0.067 13.4 11.8 2.3 1 1 1 2 2 2 2 JNK_SAPK-associated protein-1 FlxA PF14282.6 gi|124027865|ref|YP_001013185.1| - 0.0004 20.3 40.1 0.059 13.4 11.1 3.6 1 1 2 3 3 3 2 FlxA-like protein DUF5082 PF16888.5 gi|124027865|ref|YP_001013185.1| - 0.00041 20.6 31.1 0.0021 18.4 16.9 4.5 1 1 3 4 4 4 2 Domain of unknown function (DUF5082) DUF4200 PF13863.6 gi|124027865|ref|YP_001013185.1| - 0.00043 20.7 21.4 0.032 14.6 0.5 4.1 1 1 3 4 4 4 1 Domain of unknown function (DUF4200) Cob_adeno_trans PF01923.18 gi|124027865|ref|YP_001013185.1| - 0.00046 20.4 14.6 0.031 14.4 2.9 3.0 1 1 2 3 3 3 1 Cobalamin adenosyltransferase BLOC1_2 PF10046.9 gi|124027865|ref|YP_001013185.1| - 0.00046 20.4 28.6 0.056 13.7 2.3 3.8 1 1 3 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.6 gi|124027865|ref|YP_001013185.1| - 0.00046 19.6 23.5 0.012 15.0 3.4 2.8 1 1 2 3 3 3 2 Growth-arrest specific micro-tubule binding DUF1192 PF06698.11 gi|124027865|ref|YP_001013185.1| - 0.00059 19.8 11.5 0.034 14.2 0.7 4.0 2 2 2 4 4 3 1 Protein of unknown function (DUF1192) FapA PF03961.13 gi|124027865|ref|YP_001013185.1| - 0.00075 18.2 22.5 0.027 13.1 1.3 2.9 1 1 1 2 2 2 1 Flagellar Assembly Protein A COG5 PF10392.9 gi|124027865|ref|YP_001013185.1| - 0.00077 19.6 25.9 0.027 14.6 7.1 3.0 1 1 2 3 3 3 1 Golgi transport complex subunit 5 Myosin_tail_1 PF01576.19 gi|124027865|ref|YP_001013185.1| - 0.00077 17.4 15.6 0.00077 17.4 15.6 1.8 1 1 0 1 1 1 1 Myosin tail COG2 PF06148.11 gi|124027865|ref|YP_001013185.1| - 0.00085 19.4 20.0 0.003 17.6 4.3 3.5 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 HrpB7 PF09486.10 gi|124027865|ref|YP_001013185.1| - 0.00098 19.5 14.1 0.0088 16.4 4.9 2.3 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) MAD PF05557.13 gi|124027865|ref|YP_001013185.1| - 0.0011 17.5 23.2 0.0062 15.0 6.4 2.0 1 1 1 2 2 2 1 Mitotic checkpoint protein DUF3450 PF11932.8 gi|124027865|ref|YP_001013185.1| - 0.0012 18.2 29.6 0.18 11.1 12.5 2.9 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) Vps51 PF08700.11 gi|124027865|ref|YP_001013185.1| - 0.0012 18.9 22.1 0.0036 17.4 3.4 4.6 1 1 3 4 4 4 1 Vps51/Vps67 DUF489 PF04356.12 gi|124027865|ref|YP_001013185.1| - 0.0014 18.7 20.6 0.01 15.8 7.8 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF489) DUF812 PF05667.11 gi|124027865|ref|YP_001013185.1| - 0.0016 17.4 24.2 0.083 11.8 9.0 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF812) DUF1640 PF07798.11 gi|124027865|ref|YP_001013185.1| - 0.0018 18.3 19.9 0.025 14.6 16.6 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1640) BicD PF09730.9 gi|124027865|ref|YP_001013185.1| - 0.0018 16.8 21.3 0.013 13.9 6.2 2.0 1 1 1 2 2 2 1 Microtubule-associated protein Bicaudal-D DUF16 PF01519.16 gi|124027865|ref|YP_001013185.1| - 0.0018 18.7 21.0 0.34 11.4 10.5 3.1 1 1 1 2 2 2 1 Protein of unknown function DUF16 Occludin_ELL PF07303.13 gi|124027865|ref|YP_001013185.1| - 0.0019 18.9 12.4 0.21 12.3 0.1 3.8 1 1 2 3 3 3 1 Occludin homology domain CdvA PF18822.1 gi|124027865|ref|YP_001013185.1| - 0.0021 17.9 22.5 4 7.3 0.4 4.5 1 1 2 4 4 4 0 CdvA-like coiled-coil domain AKNA PF12443.8 gi|124027865|ref|YP_001013185.1| - 0.0022 18.6 18.7 0.11 13.2 3.3 3.6 1 1 3 4 4 4 1 AT-hook-containing transcription factor Tup_N PF08581.10 gi|124027865|ref|YP_001013185.1| - 0.0026 18.0 19.5 0.55 10.6 8.2 3.6 1 1 2 3 3 3 1 Tup N-terminal Lebercilin PF15619.6 gi|124027865|ref|YP_001013185.1| - 0.0026 17.4 23.2 0.0075 16.0 22.2 2.0 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease FAP206 PF12018.8 gi|124027865|ref|YP_001013185.1| - 0.0027 17.2 21.3 0.013 15.0 7.0 2.6 1 1 0 2 2 2 1 Domain of unknown function CorA PF01544.18 gi|124027865|ref|YP_001013185.1| - 0.0034 16.8 22.3 0.13 11.6 1.6 2.4 1 1 1 2 2 2 1 CorA-like Mg2+ transporter protein XhlA PF10779.9 gi|124027865|ref|YP_001013185.1| - 0.0037 17.4 25.7 0.06 13.5 4.5 5.3 1 1 5 6 6 6 2 Haemolysin XhlA CooC_C PF15976.5 gi|124027865|ref|YP_001013185.1| - 0.0037 17.3 0.1 0.013 15.5 0.1 1.9 1 0 0 1 1 1 1 CS1-pili formation C-terminal Tropomyosin_1 PF12718.7 gi|124027865|ref|YP_001013185.1| - 0.0043 17.2 25.5 0.037 14.2 7.9 3.1 1 1 2 3 3 3 2 Tropomyosin like Phage_GP20 PF06810.11 gi|124027865|ref|YP_001013185.1| - 0.0052 16.6 22.3 0.011 15.6 15.3 2.9 1 1 2 3 3 3 1 Phage minor structural protein GP20 ATP-synt_D PF01813.17 gi|124027865|ref|YP_001013185.1| - 0.0054 16.6 15.3 0.45 10.3 15.2 3.3 1 1 0 1 1 1 1 ATP synthase subunit D DUF2012 PF09430.10 gi|124027865|ref|YP_001013185.1| - 0.0055 16.8 0.1 0.013 15.6 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2012) Tropomyosin PF00261.20 gi|124027865|ref|YP_001013185.1| - 0.0058 16.0 19.6 0.11 11.9 2.6 2.2 1 1 1 2 2 2 2 Tropomyosin Nup54 PF13874.6 gi|124027865|ref|YP_001013185.1| - 0.0061 16.7 22.0 0.2 11.7 8.8 2.9 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 THOC7 PF05615.13 gi|124027865|ref|YP_001013185.1| - 0.0067 16.7 24.3 0.33 11.3 3.2 3.9 1 1 3 4 4 3 2 Tho complex subunit 7 LPP PF04728.13 gi|124027865|ref|YP_001013185.1| - 0.0073 16.7 39.4 0.26 11.7 4.5 6.4 1 1 4 5 5 4 1 Lipoprotein leucine-zipper Uso1_p115_C PF04871.13 gi|124027865|ref|YP_001013185.1| - 0.0074 16.6 29.8 2 8.8 9.9 3.6 1 1 2 3 3 3 0 Uso1 / p115 like vesicle tethering protein, C terminal region Exonuc_VII_L PF02601.15 gi|124027865|ref|YP_001013185.1| - 0.0075 15.9 22.3 0.037 13.6 7.8 2.1 1 1 1 2 2 2 1 Exonuclease VII, large subunit Phage_GPO PF05929.11 gi|124027865|ref|YP_001013185.1| - 0.0076 15.9 19.6 0.018 14.7 3.4 2.3 1 1 1 2 2 2 1 Phage capsid scaffolding protein (GPO) serine peptidase YkyA PF10368.9 gi|124027865|ref|YP_001013185.1| - 0.0077 15.9 21.3 0.022 14.4 20.3 2.2 1 1 1 2 2 2 1 Putative cell-wall binding lipoprotein ApoLp-III PF07464.11 gi|124027865|ref|YP_001013185.1| - 0.0077 16.3 26.2 0.43 10.7 16.6 2.8 1 1 1 2 2 2 1 Apolipophorin-III precursor (apoLp-III) FAM184 PF15665.5 gi|124027865|ref|YP_001013185.1| - 0.0079 16.0 18.1 0.062 13.1 18.0 2.0 1 1 0 1 1 1 1 Family with sequence similarity 184, A and B Fmp27_WPPW PF10359.9 gi|124027865|ref|YP_001013185.1| - 0.009 14.9 20.8 0.43 9.4 0.9 3.0 1 1 2 3 3 3 1 RNA pol II promoter Fmp27 protein domain Big_1 PF02369.16 gi|124027865|ref|YP_001013185.1| - 0.0092 16.0 1.3 0.0092 16.0 1.3 3.3 3 0 0 3 3 2 1 Bacterial Ig-like domain (group 1) Leu_zip PF15294.6 gi|124027865|ref|YP_001013185.1| - 0.011 15.3 20.7 0.13 11.8 5.2 2.5 1 1 1 2 2 2 0 Leucine zipper DUF4618 PF15397.6 gi|124027865|ref|YP_001013185.1| - 0.011 15.1 22.6 0.25 10.8 4.3 3.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) DUF2935 PF11155.8 gi|124027865|ref|YP_001013185.1| - 0.013 15.9 12.6 63 3.9 12.6 3.0 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) Fzo_mitofusin PF04799.13 gi|124027865|ref|YP_001013185.1| - 0.013 15.1 21.7 0.2 11.2 6.7 3.8 1 1 2 3 3 3 0 fzo-like conserved region Laminin_II PF06009.12 gi|124027865|ref|YP_001013185.1| - 0.014 15.4 27.0 0.13 12.3 5.4 3.0 1 1 1 2 2 2 0 Laminin Domain II WXG100 PF06013.12 gi|124027865|ref|YP_001013185.1| - 0.014 15.6 25.5 2.4 8.5 7.0 5.1 2 2 2 4 4 4 0 Proteins of 100 residues with WXG APG17 PF04108.12 gi|124027865|ref|YP_001013185.1| - 0.015 14.4 23.8 0.097 11.8 6.0 2.3 1 1 1 2 2 2 0 Autophagy protein Apg17 Enkurin PF13864.6 gi|124027865|ref|YP_001013185.1| - 0.015 15.7 17.7 0.13 12.7 5.2 3.9 1 1 3 4 4 4 0 Calmodulin-binding Snapin_Pallidin PF14712.6 gi|124027865|ref|YP_001013185.1| - 0.015 15.7 28.2 1.8 9.0 2.5 4.3 1 1 1 3 3 3 0 Snapin/Pallidin SF-assemblin PF06705.11 gi|124027865|ref|YP_001013185.1| - 0.016 14.6 20.0 0.68 9.2 12.8 2.8 1 1 1 2 2 2 0 SF-assemblin/beta giardin FliJ PF02050.16 gi|124027865|ref|YP_001013185.1| - 0.016 15.4 25.1 1.6 8.9 4.1 3.7 1 1 2 4 4 4 0 Flagellar FliJ protein DivIC PF04977.15 gi|124027865|ref|YP_001013185.1| - 0.017 14.9 31.4 0.32 10.8 5.6 5.5 1 1 3 5 5 5 0 Septum formation initiator SHE3 PF17078.5 gi|124027865|ref|YP_001013185.1| - 0.017 14.8 22.8 0.027 14.2 18.2 2.5 1 1 0 2 2 2 0 SWI5-dependent HO expression protein 3 TMF_DNA_bd PF12329.8 gi|124027865|ref|YP_001013185.1| - 0.019 15.0 32.3 0.22 11.5 10.5 4.6 1 1 4 5 5 5 0 TATA element modulatory factor 1 DNA binding LUC7 PF03194.15 gi|124027865|ref|YP_001013185.1| - 0.019 14.6 12.2 0.075 12.7 1.4 2.2 1 1 1 2 2 2 0 LUC7 N_terminus Spc24 PF08286.11 gi|124027865|ref|YP_001013185.1| - 0.021 15.0 30.7 0.76 10.0 1.8 5.1 1 1 3 4 4 4 0 Spc24 subunit of Ndc80 ALIX_LYPXL_bnd PF13949.6 gi|124027865|ref|YP_001013185.1| - 0.022 14.1 20.4 0.038 13.3 20.4 1.4 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Gp58 PF07902.11 gi|124027865|ref|YP_001013185.1| - 0.022 13.1 23.5 0.11 10.8 23.5 2.0 1 1 1 2 2 2 0 gp58-like protein RmuC PF02646.16 gi|124027865|ref|YP_001013185.1| - 0.024 13.8 19.1 1.1 8.4 0.3 3.4 1 1 1 3 3 3 0 RmuC family Syntaxin_2 PF14523.6 gi|124027865|ref|YP_001013185.1| - 0.025 14.9 27.2 0.65 10.4 7.0 3.4 1 1 2 3 3 3 0 Syntaxin-like protein LXG PF04740.12 gi|124027865|ref|YP_001013185.1| - 0.026 14.2 28.9 0.76 9.5 5.7 2.8 1 1 1 2 2 2 0 LXG domain of WXG superfamily MAP65_ASE1 PF03999.12 gi|124027865|ref|YP_001013185.1| - 0.029 13.1 16.5 0.048 12.4 16.5 1.3 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) DUF724 PF05266.14 gi|124027865|ref|YP_001013185.1| - 0.029 14.2 19.3 1.4 8.7 4.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) GTP-bdg_M PF16360.5 gi|124027865|ref|YP_001013185.1| - 0.029 15.0 11.7 0.16 12.6 1.4 3.8 3 1 1 4 4 2 0 GTP-binding GTPase Middle Region Laminin_I PF06008.14 gi|124027865|ref|YP_001013185.1| - 0.032 13.9 28.7 0.22 11.2 12.2 2.5 1 1 1 2 2 2 0 Laminin Domain I Mod_r PF07200.13 gi|124027865|ref|YP_001013185.1| - 0.032 14.3 29.6 1.1 9.3 14.3 2.7 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Phage_Mu_Gam PF07352.12 gi|124027865|ref|YP_001013185.1| - 0.032 14.1 20.4 1.1 9.1 0.6 3.6 1 1 2 3 3 3 0 Bacteriophage Mu Gam like protein TACC_C PF05010.14 gi|124027865|ref|YP_001013185.1| - 0.034 13.9 16.7 0.56 10.0 15.6 2.2 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal ApoO PF09769.9 gi|124027865|ref|YP_001013185.1| - 0.035 14.1 8.8 4.8 7.2 4.5 3.8 1 1 1 2 2 2 0 Apolipoprotein O FliD_C PF07195.12 gi|124027865|ref|YP_001013185.1| - 0.04 13.3 21.9 0.47 9.8 5.0 3.2 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 C-terminus zf-C4H2 PF10146.9 gi|124027865|ref|YP_001013185.1| - 0.041 14.2 18.6 0.059 13.7 11.0 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein UPF0242 PF06785.11 gi|124027865|ref|YP_001013185.1| - 0.041 14.0 24.1 0.084 13.0 2.1 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Vps53_N PF04100.12 gi|124027865|ref|YP_001013185.1| - 0.046 12.7 22.3 0.029 13.3 3.4 2.3 1 1 0 2 2 2 0 Vps53-like, N-terminal ACP_PD PF04336.12 gi|124027865|ref|YP_001013185.1| - 0.046 14.1 4.8 0.64 10.5 1.3 3.0 1 1 2 3 3 2 0 Acyl carrier protein phosphodiesterase DUF4201 PF13870.6 gi|124027865|ref|YP_001013185.1| - 0.046 13.4 21.4 2.8 7.6 0.1 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) DUF1515 PF07439.11 gi|124027865|ref|YP_001013185.1| - 0.048 13.7 0.4 0.048 13.7 0.4 3.6 2 1 0 3 3 2 0 Protein of unknown function (DUF1515) SdrD_B PF17210.3 gi|124027865|ref|YP_001013185.1| - 0.05 13.8 3.4 0.061 13.6 1.4 2.1 2 0 0 2 2 1 0 SdrD B-like domain EMP24_GP25L PF01105.24 gi|124027865|ref|YP_001013185.1| - 0.052 13.5 15.2 2.8 7.9 0.4 4.3 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF4140 PF13600.6 gi|124027865|ref|YP_001013185.1| - 0.056 13.9 25.2 97 3.5 7.1 5.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) FH2 PF02181.23 gi|124027865|ref|YP_001013185.1| - 0.058 12.5 17.1 0.079 12.1 5.6 2.8 1 1 1 2 2 2 0 Formin Homology 2 Domain TolA_bind_tri PF16331.5 gi|124027865|ref|YP_001013185.1| - 0.06 13.4 29.8 0.044 13.9 6.0 4.0 1 1 1 3 3 2 0 TolA binding protein trimerisation YlqD PF11068.8 gi|124027865|ref|YP_001013185.1| - 0.06 13.7 25.5 3.2 8.1 2.8 3.6 1 1 1 2 2 1 0 YlqD protein Mce4_CUP1 PF11887.8 gi|124027865|ref|YP_001013185.1| - 0.064 12.7 16.0 0.035 13.6 7.1 2.4 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative Rab5-bind PF09311.11 gi|124027865|ref|YP_001013185.1| - 0.065 12.6 23.3 3.4 7.0 23.3 2.5 1 1 0 1 1 1 0 Rabaptin-like protein CREPT PF16566.5 gi|124027865|ref|YP_001013185.1| - 0.066 13.4 18.4 0.28 11.4 2.3 2.7 1 1 2 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour YabA PF06156.13 gi|124027865|ref|YP_001013185.1| - 0.068 13.8 21.2 3.6 8.3 4.7 4.4 1 1 2 3 3 3 0 Initiation control protein YabA AI-2E_transport PF01594.16 gi|124027865|ref|YP_001013185.1| - 0.069 12.3 15.6 0.33 10.1 4.1 3.2 1 1 2 3 3 3 0 AI-2E family transporter Isy1 PF06246.12 gi|124027865|ref|YP_001013185.1| - 0.071 12.7 5.2 0.13 11.9 5.2 1.3 1 0 0 1 1 1 0 Isy1-like splicing family T4SS PF07996.11 gi|124027865|ref|YP_001013185.1| - 0.074 13.5 26.4 1.6 9.1 22.5 2.8 1 1 1 2 2 2 0 Type IV secretion system proteins V_ATPase_I PF01496.19 gi|124027865|ref|YP_001013185.1| - 0.076 10.9 17.0 0.22 9.4 1.1 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Dynamitin PF04912.14 gi|124027865|ref|YP_001013185.1| - 0.082 12.2 26.2 1 8.6 10.7 2.3 1 1 0 2 2 2 0 Dynamitin CCDC-167 PF15188.6 gi|124027865|ref|YP_001013185.1| - 0.094 13.1 20.2 0.63 10.4 0.4 4.3 2 2 0 3 3 3 0 Coiled-coil domain-containing protein 167 FPP PF05911.11 gi|124027865|ref|YP_001013185.1| - 0.094 10.9 26.7 0.38 8.9 11.3 2.0 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil SKA1 PF07160.12 gi|124027865|ref|YP_001013185.1| - 0.094 12.5 22.8 1.1 9.1 6.8 3.3 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 CENP-Q PF13094.6 gi|124027865|ref|YP_001013185.1| - 0.095 12.9 25.3 15 5.8 20.3 3.4 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit RasGAP_C PF03836.15 gi|124027865|ref|YP_001013185.1| - 0.1 12.8 21.7 0.26 11.5 6.2 3.5 1 1 2 3 3 3 0 RasGAP C-terminus HMMR_C PF15908.5 gi|124027865|ref|YP_001013185.1| - 0.1 12.9 12.6 0.18 12.1 11.1 2.0 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor C-terminal DUF4472 PF14739.6 gi|124027865|ref|YP_001013185.1| - 0.11 13.2 19.3 0.38 11.5 3.2 3.0 1 1 1 3 3 3 0 Domain of unknown function (DUF4472) PI3K_P85_iSH2 PF16454.5 gi|124027865|ref|YP_001013185.1| - 0.11 12.0 20.6 3.4 7.2 15.2 3.1 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF1804 PF08822.11 gi|124027865|ref|YP_001013185.1| - 0.15 12.1 6.9 0.063 13.3 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) BST2 PF16716.5 gi|124027865|ref|YP_001013185.1| - 0.16 12.6 27.4 0.49 11.0 6.6 4.0 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 Syntaxin-6_N PF09177.11 gi|124027865|ref|YP_001013185.1| - 0.18 12.4 21.7 0.45 11.1 3.6 3.9 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Cluap1 PF10234.9 gi|124027865|ref|YP_001013185.1| - 0.18 11.2 23.7 0.6 9.5 8.2 3.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 Cytochrom_C_2 PF01322.20 gi|124027865|ref|YP_001013185.1| - 0.19 12.7 5.0 1.7 9.6 1.6 2.4 1 1 1 2 2 2 0 Cytochrome C' HemX PF04375.14 gi|124027865|ref|YP_001013185.1| - 0.2 10.9 30.1 1.8e+04 -7.8 29.7 3.0 1 1 0 1 1 0 0 HemX, putative uroporphyrinogen-III C-methyltransferase GPS2_interact PF15784.5 gi|124027865|ref|YP_001013185.1| - 0.21 12.1 6.6 2 8.9 6.6 2.6 1 1 0 1 1 1 0 G-protein pathway suppressor 2-interacting domain JIP_LZII PF16471.5 gi|124027865|ref|YP_001013185.1| - 0.21 11.8 25.5 1.4 9.1 8.8 5.0 2 1 3 5 5 5 0 JNK-interacting protein leucine zipper II ACCA PF03255.14 gi|124027865|ref|YP_001013185.1| - 0.22 11.4 15.0 19 5.1 0.6 3.4 1 1 2 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit bZIP_1 PF00170.21 gi|124027865|ref|YP_001013185.1| - 0.24 11.5 23.4 6.3 7.0 3.1 4.6 3 2 2 5 5 4 0 bZIP transcription factor DUF2730 PF10805.8 gi|124027865|ref|YP_001013185.1| - 0.24 11.5 24.8 0.59 10.3 4.9 4.7 1 1 4 5 5 5 0 Protein of unknown function (DUF2730) SYCE1 PF15233.6 gi|124027865|ref|YP_001013185.1| - 0.25 11.4 21.5 0.78 9.8 3.2 3.0 1 1 2 3 3 3 0 Synaptonemal complex central element protein 1 Peptidase_S46 PF10459.9 gi|124027865|ref|YP_001013185.1| - 0.26 9.9 8.5 0.36 9.4 8.5 1.2 1 0 0 1 1 1 0 Peptidase S46 DUF1690 PF07956.11 gi|124027865|ref|YP_001013185.1| - 0.27 11.6 22.5 0.81 10.1 13.7 2.6 1 1 1 2 2 2 0 Protein of Unknown function (DUF1690) PIN_8 PF18476.1 gi|124027865|ref|YP_001013185.1| - 0.28 11.0 13.3 0.15 11.9 8.7 2.0 1 1 1 2 2 2 0 PIN like domain YjcZ PF13990.6 gi|124027865|ref|YP_001013185.1| - 0.29 10.5 18.3 0.48 9.7 4.9 3.1 1 1 2 3 3 3 0 YjcZ-like protein Spectrin PF00435.21 gi|124027865|ref|YP_001013185.1| - 0.29 11.6 20.2 0.52 10.8 2.6 2.9 1 1 2 3 3 3 0 Spectrin repeat Rx_N PF18052.1 gi|124027865|ref|YP_001013185.1| - 0.29 11.4 16.5 12 6.2 0.1 5.0 2 1 2 5 5 4 0 Rx N-terminal domain Cast PF10174.9 gi|124027865|ref|YP_001013185.1| - 0.3 9.3 23.0 1.7 6.8 23.2 1.7 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone FmiP_Thoc5 PF09766.9 gi|124027865|ref|YP_001013185.1| - 0.31 10.3 23.3 0.14 11.4 2.5 3.1 1 1 1 3 3 3 0 Fms-interacting protein/Thoc5 FAM76 PF16046.5 gi|124027865|ref|YP_001013185.1| - 0.31 10.3 18.9 0.11 11.9 7.3 2.8 1 1 2 3 3 3 0 FAM76 protein CENP-K PF11802.8 gi|124027865|ref|YP_001013185.1| - 0.32 10.5 16.9 0.5 9.9 16.9 1.2 1 0 0 1 1 1 0 Centromere-associated protein K DUF2203 PF09969.9 gi|124027865|ref|YP_001013185.1| - 0.33 11.7 15.4 2.9 8.6 1.2 3.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Lectin_N PF03954.14 gi|124027865|ref|YP_001013185.1| - 0.37 10.5 24.0 0.78 9.5 6.9 3.2 1 1 2 3 3 3 0 Hepatic lectin, N-terminal domain DUF641 PF04859.12 gi|124027865|ref|YP_001013185.1| - 0.4 11.0 19.0 3.6 7.9 2.0 3.3 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) BRE1 PF08647.11 gi|124027865|ref|YP_001013185.1| - 0.43 10.7 28.5 2.7 8.1 5.2 2.9 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase LemA PF04011.12 gi|124027865|ref|YP_001013185.1| - 0.46 10.3 16.4 0.17 11.8 3.8 3.3 1 1 1 2 2 2 0 LemA family PSI_PsaF PF02507.15 gi|124027865|ref|YP_001013185.1| - 0.47 10.3 3.3 0.49 10.2 0.9 2.2 1 1 1 2 2 1 0 Photosystem I reaction centre subunit III DUF4763 PF15960.5 gi|124027865|ref|YP_001013185.1| - 0.48 9.7 20.9 0.4 9.9 5.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) RPW8 PF05659.11 gi|124027865|ref|YP_001013185.1| - 0.48 10.1 13.9 1.8 8.3 0.1 4.1 1 1 3 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF2959 PF11172.8 gi|124027865|ref|YP_001013185.1| - 0.49 10.5 17.9 2.6 8.1 1.0 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) HAP1_N PF04849.13 gi|124027865|ref|YP_001013185.1| - 0.51 9.5 26.7 0.71 9.0 9.5 2.1 1 1 1 2 2 2 0 HAP1 N-terminal conserved region THP2 PF09432.10 gi|124027865|ref|YP_001013185.1| - 0.62 10.1 10.3 1.6 8.8 7.3 2.7 1 1 2 3 3 3 0 Tho complex subunit THP2 KfrA_N PF11740.8 gi|124027865|ref|YP_001013185.1| - 0.63 10.7 18.4 0.45 11.2 2.7 3.3 1 1 2 3 3 3 0 Plasmid replication region DNA-binding N-term Phasin PF05597.11 gi|124027865|ref|YP_001013185.1| - 0.64 10.0 16.1 1 9.4 7.1 3.0 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Tho2 PF11262.8 gi|124027865|ref|YP_001013185.1| - 0.65 9.1 13.8 4.5 6.4 8.8 2.3 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 BshC PF10079.9 gi|124027865|ref|YP_001013185.1| - 0.68 8.6 17.5 0.79 8.4 9.4 2.3 1 1 2 3 3 3 0 Bacillithiol biosynthesis BshC LRRFIP PF09738.9 gi|124027865|ref|YP_001013185.1| - 0.79 9.1 19.7 0.63 9.5 18.4 1.5 1 1 0 1 1 1 0 LRRFIP family LOH1CR12 PF10158.9 gi|124027865|ref|YP_001013185.1| - 0.79 9.7 13.1 1.1 9.2 4.8 2.5 1 1 1 2 2 2 0 Tumour suppressor protein GrpE PF01025.19 gi|124027865|ref|YP_001013185.1| - 0.83 9.3 20.0 26 4.5 0.2 3.6 1 1 1 2 2 2 0 GrpE Trimer_CC PF08954.11 gi|124027865|ref|YP_001013185.1| - 0.84 9.2 9.3 2.2 7.9 0.5 2.9 2 1 0 2 2 2 0 Trimerisation motif TipAS PF07739.13 gi|124027865|ref|YP_001013185.1| - 0.86 10.2 6.6 0.62 10.6 2.1 2.5 1 1 2 3 3 1 0 TipAS antibiotic-recognition domain Corona_S2 PF01601.16 gi|124027865|ref|YP_001013185.1| - 0.87 8.0 24.9 0.024 13.1 6.5 2.5 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein Vip3A_N PF12495.8 gi|124027865|ref|YP_001013185.1| - 0.87 9.5 18.5 0.33 10.8 10.8 2.6 1 1 2 3 3 3 0 Vegetative insecticide protein 3A N terminal 5_nucleotid PF05761.14 gi|124027865|ref|YP_001013185.1| - 0.88 8.4 12.8 1.6 7.6 5.8 2.1 1 1 1 2 2 2 0 5' nucleotidase family T3SSipB PF16535.5 gi|124027865|ref|YP_001013185.1| - 0.9 10.0 24.2 22 5.5 6.4 3.2 1 1 1 2 2 2 0 Type III cell invasion protein SipB Muted PF14942.6 gi|124027865|ref|YP_001013185.1| - 0.92 9.8 21.3 13 6.2 5.2 3.1 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein KxDL PF10241.9 gi|124027865|ref|YP_001013185.1| - 0.94 9.8 21.9 0.66 10.3 4.1 3.2 1 1 2 3 3 3 0 Uncharacterized conserved protein Mt_ATP-synt_D PF05873.12 gi|124027865|ref|YP_001013185.1| - 1 9.2 7.1 21 4.9 4.5 3.1 1 1 2 3 3 2 0 ATP synthase D chain, mitochondrial (ATP5H) DUF4600 PF15372.6 gi|124027865|ref|YP_001013185.1| - 1 9.8 18.4 4.9 7.6 3.2 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4600) DUF1319 PF07028.11 gi|124027865|ref|YP_001013185.1| - 1 9.6 13.8 1.9 8.8 4.1 3.9 1 1 3 4 4 3 0 Protein of unknown function (DUF1319) Nsp1_C PF05064.13 gi|124027865|ref|YP_001013185.1| - 1 9.2 24.6 0.5 10.2 1.7 3.8 1 1 3 4 4 3 0 Nsp1-like C-terminal region Cnn_1N PF07989.11 gi|124027865|ref|YP_001013185.1| - 1.1 9.4 20.7 1.6 8.9 4.4 4.0 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 DASH_Dam1 PF08653.10 gi|124027865|ref|YP_001013185.1| - 1.1 9.1 17.8 9.6 6.1 1.3 5.6 2 2 3 5 5 5 0 DASH complex subunit Dam1 DUF1151 PF06625.11 gi|124027865|ref|YP_001013185.1| - 1.3 9.0 9.3 0.35 10.8 4.9 2.1 1 1 1 2 2 1 0 Protein of unknown function (DUF1151) EDR1 PF14381.6 gi|124027865|ref|YP_001013185.1| - 1.3 8.7 12.6 1.4 8.6 1.2 2.2 1 1 1 2 2 2 0 Ethylene-responsive protein kinase Le-CTR1 MutS_III PF05192.18 gi|124027865|ref|YP_001013185.1| - 1.4 9.1 17.3 3.5 7.8 17.3 1.6 1 1 0 1 1 1 0 MutS domain III Not3 PF04065.15 gi|124027865|ref|YP_001013185.1| - 1.4 8.3 18.6 4.1 6.8 12.7 2.4 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component Cep57_MT_bd PF06657.13 gi|124027865|ref|YP_001013185.1| - 1.4 9.4 20.7 5 7.6 0.9 4.3 1 1 3 5 5 4 0 Centrosome microtubule-binding domain of Cep57 V-SNARE PF05008.15 gi|124027865|ref|YP_001013185.1| - 1.4 9.3 25.5 2.6 8.5 2.8 4.1 1 1 3 4 4 4 0 Vesicle transport v-SNARE protein N-terminus DUF148 PF02520.17 gi|124027865|ref|YP_001013185.1| - 1.6 8.9 25.9 7.1 6.8 4.7 3.0 1 1 2 3 3 3 0 Domain of unknown function DUF148 F_actin_bind PF08919.10 gi|124027865|ref|YP_001013185.1| - 1.6 8.8 17.1 2.5 8.2 2.8 3.2 1 1 0 2 2 2 0 F-actin binding DUF4407 PF14362.6 gi|124027865|ref|YP_001013185.1| - 1.9 7.8 33.3 0.2 11.0 22.4 3.1 2 1 1 3 3 2 0 Domain of unknown function (DUF4407) Ax_dynein_light PF10211.9 gi|124027865|ref|YP_001013185.1| - 2 8.3 18.3 5.9 6.8 11.2 2.9 1 1 3 4 4 3 0 Axonemal dynein light chain GLTP PF08718.11 gi|124027865|ref|YP_001013185.1| - 2 8.7 9.9 4 7.7 6.3 2.7 1 1 1 2 2 2 0 Glycolipid transfer protein (GLTP) FemAB PF02388.16 gi|124027865|ref|YP_001013185.1| - 2 7.2 15.4 1.6 7.5 6.9 2.8 1 1 1 2 2 2 0 FemAB family DUF4988 PF16378.5 gi|124027865|ref|YP_001013185.1| - 2 8.0 23.5 3.4 7.3 0.1 5.2 1 1 4 6 6 5 0 Domain of unknown function DUF2968 PF11180.8 gi|124027865|ref|YP_001013185.1| - 2.1 8.0 20.2 0.7 9.5 3.5 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2968) MIP-T3_C PF17749.1 gi|124027865|ref|YP_001013185.1| - 2.2 8.2 21.8 0.74 9.8 13.0 3.0 1 1 2 3 3 3 0 Microtubule-binding protein MIP-T3 C-terminal region YscO PF07321.12 gi|124027865|ref|YP_001013185.1| - 2.5 8.0 18.4 0.54 10.2 2.9 2.7 1 1 2 3 3 3 0 Type III secretion protein YscO BAG PF02179.16 gi|124027865|ref|YP_001013185.1| - 2.5 8.6 6.5 14 6.2 6.5 2.3 1 1 0 1 1 1 0 BAG domain ERM PF00769.19 gi|124027865|ref|YP_001013185.1| - 2.5 7.8 20.1 62 3.3 20.3 2.1 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Hrs_helical PF12210.8 gi|124027865|ref|YP_001013185.1| - 2.7 8.6 14.0 7.6 7.1 0.5 3.5 1 1 2 3 3 3 0 Hepatocyte growth factor-regulated tyrosine kinase substrate DUF3209 PF11483.8 gi|124027865|ref|YP_001013185.1| - 2.9 8.4 9.5 2.8 8.4 1.0 2.6 1 1 2 3 3 2 0 Protein of unknown function (DUF3209) GOLGA2L5 PF15070.6 gi|124027865|ref|YP_001013185.1| - 2.9 6.4 22.6 6.8 5.2 21.3 1.5 1 1 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 DASH_Dad2 PF08654.10 gi|124027865|ref|YP_001013185.1| - 3 8.3 26.6 68 4.0 0.9 5.0 1 1 3 4 4 4 0 DASH complex subunit Dad2 ATP-synt_E_2 PF08112.11 gi|124027865|ref|YP_001013185.1| - 3 8.2 6.7 0.46 10.8 1.9 2.2 2 0 0 2 2 1 0 ATP synthase epsilon subunit MbeD_MobD PF04899.12 gi|124027865|ref|YP_001013185.1| - 3.1 8.0 21.6 6.3 7.0 1.3 4.0 1 1 2 3 3 3 0 MbeD/MobD like Vps52 PF04129.12 gi|124027865|ref|YP_001013185.1| - 3.1 6.4 20.6 8.9 4.9 0.4 2.6 1 1 1 2 2 2 0 Vps52 / Sac2 family IMD PF08397.11 gi|124027865|ref|YP_001013185.1| - 3.1 7.1 11.4 11 5.3 11.3 1.9 1 1 0 1 1 1 0 IRSp53/MIM homology domain Sec34 PF04136.15 gi|124027865|ref|YP_001013185.1| - 3.2 7.6 24.8 1.1 9.1 4.9 3.4 1 1 2 3 3 3 0 Sec34-like family PCRF PF03462.18 gi|124027865|ref|YP_001013185.1| - 3.2 7.6 18.1 5.2 6.9 8.9 2.8 1 1 1 2 2 2 0 PCRF domain SPATA1_C PF15743.5 gi|124027865|ref|YP_001013185.1| - 3.3 7.8 18.9 5.1 7.1 0.1 3.0 1 1 2 3 3 3 0 Spermatogenesis-associated C-terminus Swi5 PF07061.11 gi|124027865|ref|YP_001013185.1| - 3.3 7.9 28.0 3.4 7.8 1.7 5.4 1 1 5 6 6 6 0 Swi5 DUF3040 PF11239.8 gi|124027865|ref|YP_001013185.1| - 3.5 8.0 5.1 1.3 9.4 0.1 2.8 4 0 0 4 4 1 0 Protein of unknown function (DUF3040) CHAD PF05235.14 gi|124027865|ref|YP_001013185.1| - 3.6 7.5 10.6 2.5 8.0 7.9 1.9 1 1 1 2 2 1 0 CHAD domain PRKG1_interact PF15898.5 gi|124027865|ref|YP_001013185.1| - 3.7 8.5 22.4 1.8e+04 -5.0 22.3 3.4 1 1 0 1 1 0 0 cGMP-dependent protein kinase interacting domain HU-CCDC81_bac_2 PF18175.1 gi|124027865|ref|YP_001013185.1| - 4.2 7.3 9.8 0.81 9.6 2.0 3.4 3 1 0 3 3 2 0 CCDC81-like prokaryotic HU domain 2 GAT PF03127.14 gi|124027865|ref|YP_001013185.1| - 4.3 7.7 20.3 4.6 7.6 3.3 3.5 2 1 0 3 3 2 0 GAT domain SIKE PF05769.11 gi|124027865|ref|YP_001013185.1| - 4.6 7.1 21.4 5 7.0 18.6 2.2 1 1 0 1 1 1 0 SIKE family DASH_Hsk3 PF08227.11 gi|124027865|ref|YP_001013185.1| - 5.3 7.5 34.8 1.5 9.3 2.5 5.5 3 2 2 5 5 5 0 DASH complex subunit Hsk3 like L31 PF09784.9 gi|124027865|ref|YP_001013185.1| - 6 7.4 6.4 34 4.9 0.3 3.4 1 1 2 3 3 2 0 Mitochondrial ribosomal protein L31 DUF745 PF05335.13 gi|124027865|ref|YP_001013185.1| - 6.2 6.5 24.9 0.24 11.1 10.5 2.8 1 1 2 3 3 2 0 Protein of unknown function (DUF745) LMBR1 PF04791.16 gi|124027865|ref|YP_001013185.1| - 6.2 5.6 16.8 16 4.2 16.8 1.7 1 1 0 1 1 1 0 LMBR1-like membrane protein DUF5344 PF17279.2 gi|124027865|ref|YP_001013185.1| - 7.4 7.2 27.4 2.1 9.0 1.2 3.9 1 1 3 4 4 4 0 Family of unknown function (DUF5344) Wtap PF17098.5 gi|124027865|ref|YP_001013185.1| - 7.5 6.5 24.6 23 4.9 16.3 2.9 1 1 1 2 2 2 0 WTAP/Mum2p family HalX PF08663.10 gi|124027865|ref|YP_001013185.1| - 8 6.9 18.3 15 6.0 0.7 4.7 2 1 2 4 4 3 0 HalX domain Rho_Binding PF08912.11 gi|124027865|ref|YP_001013185.1| - 8.1 7.3 22.8 9.9 7.1 1.4 4.7 1 1 3 4 4 3 0 Rho Binding HAUS6_N PF14661.6 gi|124027865|ref|YP_001013185.1| - 8.5 5.9 17.9 10 5.6 5.3 2.8 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus CENP-H PF05837.12 gi|124027865|ref|YP_001013185.1| - 8.7 6.8 29.2 1.3 9.5 7.2 3.7 1 1 2 3 3 3 0 Centromere protein H (CENP-H) DUF3086 PF11285.8 gi|124027865|ref|YP_001013185.1| - 8.8 5.3 13.1 3.8 6.5 2.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3086) DUF4404 PF14357.6 gi|124027865|ref|YP_001013185.1| - 9 7.0 31.8 3.9 8.2 0.9 4.2 1 1 2 4 4 3 0 Domain of unknown function (DUF4404) Cauli_AT PF03233.13 gi|124027865|ref|YP_001013185.1| - 9.1 6.2 14.9 60 3.5 1.8 3.3 1 1 2 3 3 3 0 Aphid transmission protein Cytochrom_B562 PF07361.11 gi|124027865|ref|YP_001013185.1| - 9.2 7.0 15.2 44 4.8 0.3 3.2 1 1 2 3 3 3 0 Cytochrome b562 Ribosomal_S20p PF01649.18 gi|124027865|ref|YP_001013185.1| - 9.2 7.0 8.5 29 5.4 3.1 3.6 2 2 1 3 3 2 0 Ribosomal protein S20 Peptidase_S8 PF00082.22 gi|124027866|ref|YP_001013186.1| - 3.3e-24 85.7 0.0 6.7e-23 81.4 0.0 2.4 1 1 0 1 1 1 1 Subtilase family VCBS PF13517.6 gi|124027866|ref|YP_001013186.1| - 0.27 11.9 8.5 0.13 12.9 3.1 3.3 3 0 0 3 3 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|124027866|ref|YP_001013186.1| - 6.5 7.0 13.5 0.48 10.6 3.6 2.9 2 0 0 2 2 2 0 FG-GAP repeat Succ_CoA_lig PF13607.6 gi|124027867|ref|YP_001013187.1| - 6.6e-52 175.0 0.3 3.6e-51 172.6 0.0 2.3 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|124027867|ref|YP_001013187.1| - 5.6e-30 104.2 0.1 2.3e-28 99.0 0.1 2.7 2 1 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|124027867|ref|YP_001013187.1| - 2e-13 50.8 0.2 1.1e-12 48.4 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.17 gi|124027867|ref|YP_001013187.1| - 0.028 15.0 0.3 2.6 8.7 0.1 3.1 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent DJ-1_PfpI PF01965.24 gi|124027868|ref|YP_001013188.1| - 2.9e-43 147.5 0.0 3.6e-43 147.2 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|124027868|ref|YP_001013188.1| - 9.1e-05 22.1 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|124027868|ref|YP_001013188.1| - 0.00025 20.8 0.0 0.00033 20.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I URO-D PF01208.17 gi|124027868|ref|YP_001013188.1| - 0.0018 17.5 0.0 0.0023 17.1 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) ThiJ_like PF17124.5 gi|124027868|ref|YP_001013188.1| - 0.0018 18.0 0.0 0.035 13.8 0.0 2.4 1 1 1 2 2 2 1 ThiJ/PfpI family-like Peptidase_C26 PF07722.13 gi|124027868|ref|YP_001013188.1| - 0.036 13.8 0.1 0.065 13.0 0.1 1.5 1 1 0 1 1 1 0 Peptidase C26 Leu_leader PF08054.11 gi|124027868|ref|YP_001013188.1| - 0.063 12.9 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 Leucine operon leader peptide Succ_CoA_lig PF13607.6 gi|124027868|ref|YP_001013188.1| - 0.072 12.9 0.1 0.26 11.1 0.0 1.9 2 0 0 2 2 2 0 Succinyl-CoA ligase like flavodoxin domain Glyco_transf_4 PF13439.6 gi|124027868|ref|YP_001013188.1| - 0.1 12.6 0.0 0.19 11.7 0.0 1.5 1 1 0 1 1 1 0 Glycosyltransferase Family 4 SNO PF01174.19 gi|124027868|ref|YP_001013188.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family PhoU PF01895.19 gi|124027870|ref|YP_001013190.1| - 3.6e-21 75.4 6.5 2.1e-13 50.5 2.0 2.4 2 1 0 2 2 2 2 PhoU domain DUF2153 PF09921.9 gi|124027871|ref|YP_001013191.1| - 4.6e-56 187.9 2.4 5.7e-56 187.6 2.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) DUF1912 PF08930.10 gi|124027871|ref|YP_001013191.1| - 0.021 15.0 0.5 0.42 10.8 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1912) OSCP PF00213.18 gi|124027871|ref|YP_001013191.1| - 0.023 14.8 0.0 0.05 13.7 0.0 1.5 1 1 0 1 1 1 0 ATP synthase delta (OSCP) subunit DUF1981 PF09324.10 gi|124027871|ref|YP_001013191.1| - 0.041 13.7 0.2 9.2 6.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1981) AFOR_C PF01314.18 gi|124027873|ref|YP_001013193.1| - 5.9e-136 453.4 0.0 7.4e-136 453.1 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|124027873|ref|YP_001013193.1| - 1.2e-74 250.5 0.0 1.8e-74 249.9 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF3837 PF12939.7 gi|124027873|ref|YP_001013193.1| - 0.014 15.8 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) Fer4_8 PF13183.6 gi|124027874|ref|YP_001013194.1| - 5.7e-10 39.5 2.6 5.7e-10 39.5 2.6 2.0 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|124027874|ref|YP_001013194.1| - 1.2e-08 35.3 3.4 1.2e-08 35.3 3.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|124027874|ref|YP_001013194.1| - 2.4e-06 27.6 5.3 3.8e-06 27.0 0.9 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.16 gi|124027874|ref|YP_001013194.1| - 1.5e-05 25.1 0.1 0.00088 19.4 0.1 3.2 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_7 PF12838.7 gi|124027874|ref|YP_001013194.1| - 3.8e-05 24.2 4.8 3.8e-05 24.2 4.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124027874|ref|YP_001013194.1| - 0.03 14.4 11.2 1.3 9.2 0.3 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|124027874|ref|YP_001013194.1| - 0.054 14.4 3.8 0.054 14.4 3.8 3.4 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|124027874|ref|YP_001013194.1| - 0.17 12.1 2.4 1.1 9.5 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124027874|ref|YP_001013194.1| - 0.66 11.0 9.9 0.072 14.0 4.4 2.3 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|124027874|ref|YP_001013194.1| - 1.5 9.0 18.3 0.037 14.1 9.4 2.7 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124027874|ref|YP_001013194.1| - 2 8.7 20.6 0.29 11.3 2.9 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4 PF00037.27 gi|124027874|ref|YP_001013194.1| - 8.8 6.3 26.2 0.045 13.6 4.0 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain DUF3678 PF12435.8 gi|124027875|ref|YP_001013195.1| - 0.2 11.1 0.6 0.44 10.0 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3678) SCAMP PF04144.13 gi|124027878|ref|YP_001013198.1| - 0.39 11.0 7.0 0.98 9.7 7.0 1.7 1 1 0 1 1 1 0 SCAMP family MFS_1 PF07690.16 gi|124027879|ref|YP_001013199.1| - 2e-06 27.0 18.1 9.2e-05 21.5 12.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2070 PF09843.9 gi|124027879|ref|YP_001013199.1| - 4 5.6 13.5 6.5 4.9 13.5 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) Band_7 PF01145.25 gi|124027881|ref|YP_001013201.1| - 1.3e-35 123.0 5.2 1.7e-35 122.7 5.2 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|124027881|ref|YP_001013201.1| - 0.0041 16.8 0.1 0.0064 16.2 0.1 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family ER-remodelling PF14755.6 gi|124027881|ref|YP_001013201.1| - 0.28 11.5 0.1 0.28 11.5 0.1 1.7 2 0 0 2 2 2 0 Intracellular membrane remodeller ProSAAS PF07259.12 gi|124027881|ref|YP_001013201.1| - 0.43 10.5 4.0 0.76 9.7 4.0 1.3 1 0 0 1 1 1 0 ProSAAS precursor 4HBT PF03061.22 gi|124027882|ref|YP_001013202.1| - 3.8e-07 30.4 0.6 5.7e-07 29.8 0.6 1.3 1 0 0 1 1 1 1 Thioesterase superfamily UPRTase PF14681.6 gi|124027883|ref|YP_001013203.1| - 1.4e-45 155.3 0.0 1.6e-45 155.1 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|124027883|ref|YP_001013203.1| - 4.5e-12 45.8 1.0 6.9e-12 45.2 1.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|124027883|ref|YP_001013203.1| - 0.016 14.7 0.6 0.04 13.4 0.1 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase TetR_C_6 PF13977.6 gi|124027884|ref|YP_001013204.1| - 0.015 15.5 1.8 0.023 14.9 1.8 1.4 1 1 0 1 1 1 0 BetI-type transcriptional repressor, C-terminal MotA_ExbB PF01618.16 gi|124027884|ref|YP_001013204.1| - 0.16 11.7 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 MotA/TolQ/ExbB proton channel family DUF998 PF06197.13 gi|124027885|ref|YP_001013205.1| - 6.7e-20 71.5 20.7 8.2e-20 71.2 20.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) BaxI_1 PF12811.7 gi|124027885|ref|YP_001013205.1| - 0.066 12.8 4.9 0.096 12.2 4.9 1.2 1 0 0 1 1 1 0 Bax inhibitor 1 like FUSC-like PF12805.7 gi|124027885|ref|YP_001013205.1| - 0.67 9.0 6.3 1.2 8.2 6.3 1.4 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS ThiS PF02597.20 gi|124027886|ref|YP_001013206.1| - 5.9e-11 42.9 0.0 7.7e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|124027886|ref|YP_001013206.1| - 0.033 14.5 0.0 0.043 14.2 0.0 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Nitroreductase PF00881.24 gi|124027887|ref|YP_001013207.1| - 1.9e-23 83.4 0.1 4.8e-23 82.1 0.1 1.7 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|124027887|ref|YP_001013207.1| - 1.9e-05 24.3 0.1 0.0011 18.6 0.0 2.3 1 1 1 2 2 2 2 Putative TM nitroreductase SMP PF04927.12 gi|124027887|ref|YP_001013207.1| - 0.076 13.5 1.5 0.17 12.4 0.0 2.2 2 0 0 2 2 2 0 Seed maturation protein CutA1 PF03091.15 gi|124027888|ref|YP_001013208.1| - 1.6e-34 117.7 0.4 1.9e-34 117.4 0.4 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein PsiE PF06146.12 gi|124027889|ref|YP_001013209.1| - 0.0024 18.2 8.9 0.0024 18.2 8.9 1.8 2 0 0 2 2 2 1 Phosphate-starvation-inducible E LrgB PF04172.16 gi|124027889|ref|YP_001013209.1| - 0.0067 16.0 3.5 0.0067 16.0 3.5 1.4 1 1 0 1 1 1 1 LrgB-like family DUF347 PF03988.12 gi|124027889|ref|YP_001013209.1| - 7.7 6.8 8.6 0.75 10.0 1.1 2.5 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) GP24_25 PF17388.2 gi|124027890|ref|YP_001013210.1| - 0.032 14.2 0.5 0.065 13.2 0.5 1.4 1 0 0 1 1 1 0 Tail assembly gene products 24 & 25 LINES_C PF14695.6 gi|124027890|ref|YP_001013210.1| - 0.041 13.3 1.5 1.8 8.1 0.1 3.2 3 0 0 3 3 3 0 Lines C-terminus ABC_tran PF00005.27 gi|124027891|ref|YP_001013211.1| - 3.7e-24 85.8 0.1 4.8e-24 85.4 0.1 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124027891|ref|YP_001013211.1| - 1.3e-10 41.6 0.1 1.7e-05 24.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|124027891|ref|YP_001013211.1| - 9e-08 31.8 0.1 7.6e-07 28.8 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|124027891|ref|YP_001013211.1| - 0.0021 17.7 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|124027891|ref|YP_001013211.1| - 0.0032 17.4 0.0 0.0052 16.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|124027891|ref|YP_001013211.1| - 0.0032 17.2 0.0 0.007 16.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|124027891|ref|YP_001013211.1| - 0.018 15.4 0.4 0.096 13.1 0.4 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|124027891|ref|YP_001013211.1| - 0.036 14.6 0.0 0.059 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|124027891|ref|YP_001013211.1| - 0.042 14.4 0.1 0.44 11.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|124027891|ref|YP_001013211.1| - 0.078 13.2 0.1 0.14 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|124027891|ref|YP_001013211.1| - 0.085 13.2 0.1 0.14 12.6 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|124027891|ref|YP_001013211.1| - 0.088 12.4 0.0 0.19 11.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|124027891|ref|YP_001013211.1| - 0.11 12.7 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|124027891|ref|YP_001013211.1| - 0.21 11.3 0.0 0.38 10.4 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain UPF0051 PF01458.17 gi|124027892|ref|YP_001013212.1| - 7.5e-52 176.2 0.0 9.2e-52 175.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) AP_endonuc_2 PF01261.24 gi|124027894|ref|YP_001013214.1| - 8.1e-09 35.2 0.6 1e-08 34.9 0.6 1.0 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel BKACE PF05853.12 gi|124027894|ref|YP_001013214.1| - 0.00031 20.2 0.2 0.00036 19.9 0.2 1.1 1 0 0 1 1 1 1 beta-keto acid cleavage enzyme HGD-D PF06050.13 gi|124027894|ref|YP_001013214.1| - 0.031 14.0 0.0 0.035 13.9 0.0 1.0 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Glyco_hydro_3_C PF01915.22 gi|124027894|ref|YP_001013214.1| - 0.049 13.6 0.2 0.13 12.2 0.2 1.6 1 1 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain HMGL-like PF00682.19 gi|124027894|ref|YP_001013214.1| - 0.054 13.1 0.1 0.071 12.7 0.1 1.2 1 0 0 1 1 1 0 HMGL-like PGA_cap PF09587.10 gi|124027894|ref|YP_001013214.1| - 0.081 12.4 0.6 0.14 11.6 0.6 1.4 1 1 1 2 2 2 0 Bacterial capsule synthesis protein PGA_cap DeoC PF01791.9 gi|124027894|ref|YP_001013214.1| - 0.092 12.4 0.2 0.1 12.2 0.2 1.1 1 0 0 1 1 1 0 DeoC/LacD family aldolase DUF1646 PF07854.12 gi|124027895|ref|YP_001013215.1| - 6.4e-126 420.4 25.7 7.9e-126 420.1 25.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Usp PF00582.26 gi|124027896|ref|YP_001013216.1| - 3.6e-36 124.8 5.9 5.4e-20 72.3 0.3 2.9 2 1 0 2 2 2 2 Universal stress protein family HGTP_anticodon PF03129.20 gi|124027896|ref|YP_001013216.1| - 0.0067 16.5 0.2 0.52 10.5 0.0 2.3 2 0 0 2 2 2 1 Anticodon binding domain B12-binding PF02310.19 gi|124027896|ref|YP_001013216.1| - 0.065 13.3 0.1 1.2 9.2 0.0 2.5 2 1 1 3 3 3 0 B12 binding domain ANF_receptor PF01094.28 gi|124027896|ref|YP_001013216.1| - 0.15 11.2 0.0 2.8 6.9 0.0 2.0 2 0 0 2 2 2 0 Receptor family ligand binding region ABC_ATPase PF09818.9 gi|124027897|ref|YP_001013217.1| - 9.9e-157 522.3 0.0 1.3e-156 521.9 0.0 1.0 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|124027897|ref|YP_001013217.1| - 1.1e-05 26.1 0.0 1.6e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cys_Met_Meta_PP PF01053.20 gi|124027897|ref|YP_001013217.1| - 0.11 11.0 0.1 0.16 10.4 0.1 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Peptidase_M29 PF02073.15 gi|124027897|ref|YP_001013217.1| - 0.2 10.4 0.1 0.29 9.9 0.1 1.1 1 0 0 1 1 1 0 Thermophilic metalloprotease (M29) ComA PF02679.15 gi|124027897|ref|YP_001013217.1| - 0.23 10.9 0.3 0.57 9.6 0.2 1.6 1 1 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) NTP_transf_3 PF12804.7 gi|124027899|ref|YP_001013219.1| - 2.7e-15 57.1 4.6 4e-15 56.5 4.6 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain AIRS_C PF02769.22 gi|124027900|ref|YP_001013220.1| - 2e-20 73.5 0.3 3.1e-20 72.9 0.3 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|124027900|ref|YP_001013220.1| - 7e-13 49.1 1.7 1.1e-12 48.4 0.6 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain SOR_SNZ PF01680.17 gi|124027901|ref|YP_001013221.1| - 3.6e-91 304.6 0.1 4.6e-91 304.2 0.1 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|124027901|ref|YP_001013221.1| - 4.9e-07 29.3 1.7 6.2e-06 25.7 0.1 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|124027901|ref|YP_001013221.1| - 0.00084 18.8 1.0 0.0017 17.8 1.0 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Dus PF01207.17 gi|124027901|ref|YP_001013221.1| - 0.0017 17.5 1.2 0.48 9.5 0.1 2.9 2 2 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|124027901|ref|YP_001013221.1| - 0.011 14.9 0.1 0.44 9.7 0.0 2.5 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.20 gi|124027901|ref|YP_001013221.1| - 0.012 14.4 0.0 0.26 10.1 0.0 2.2 2 0 0 2 2 2 0 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|124027901|ref|YP_001013221.1| - 0.013 14.9 0.2 1.4 8.4 0.0 2.9 2 1 0 2 2 2 0 Histidine biosynthesis protein IGPS PF00218.21 gi|124027901|ref|YP_001013221.1| - 0.017 14.3 0.0 0.52 9.4 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase TetR_C_27 PF17935.1 gi|124027901|ref|YP_001013221.1| - 0.032 14.3 0.1 0.084 12.9 0.0 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain OMPdecase PF00215.24 gi|124027901|ref|YP_001013221.1| - 0.16 11.6 0.6 1.2 8.6 0.0 2.3 2 1 0 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family SNO PF01174.19 gi|124027902|ref|YP_001013222.1| - 4.6e-52 176.6 0.0 5.5e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|124027902|ref|YP_001013222.1| - 1.9e-10 40.6 0.0 2.7e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|124027902|ref|YP_001013222.1| - 3.1e-08 33.5 0.0 4.2e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|124027902|ref|YP_001013222.1| - 9.4e-05 22.3 0.0 0.00064 19.6 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|124027902|ref|YP_001013222.1| - 0.0015 18.4 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|124027902|ref|YP_001013222.1| - 0.11 12.2 0.3 0.93 9.2 0.3 2.4 1 1 0 1 1 1 0 Peptidase C26 PALP PF00291.25 gi|124027903|ref|YP_001013223.1| - 1.6e-22 80.3 0.3 2.3e-21 76.5 0.3 2.5 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Ribosomal_L37e PF01907.19 gi|124027903|ref|YP_001013223.1| - 0.0048 17.0 0.1 0.01 16.0 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L37e PadR PF03551.14 gi|124027903|ref|YP_001013223.1| - 0.0065 16.4 0.0 0.19 11.7 0.1 2.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family zinc_ribbon_2 PF13240.6 gi|124027903|ref|YP_001013223.1| - 0.014 15.1 1.1 0.023 14.4 1.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Beta-lactamase PF00144.24 gi|124027904|ref|YP_001013224.1| - 2.1e-63 214.6 0.3 2.7e-63 214.2 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.6 gi|124027904|ref|YP_001013224.1| - 3.6e-09 36.6 0.1 7.3e-09 35.6 0.1 1.5 1 0 0 1 1 1 1 Pab87 octamerisation domain Beta-lactamase2 PF13354.6 gi|124027904|ref|YP_001013224.1| - 0.02 14.5 0.0 0.55 9.8 0.0 2.2 2 0 0 2 2 2 0 Beta-lactamase enzyme family Peptidase_S11 PF00768.20 gi|124027904|ref|YP_001013224.1| - 0.085 12.3 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase NTP_transferase PF00483.23 gi|124027905|ref|YP_001013225.1| - 2.1e-36 125.8 0.0 2.5e-36 125.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|124027905|ref|YP_001013225.1| - 1.1e-17 64.8 0.5 1.6e-17 64.3 0.5 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|124027905|ref|YP_001013225.1| - 5.9e-06 25.8 0.8 0.74 9.6 0.0 4.2 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) DUF1638 PF07796.11 gi|124027905|ref|YP_001013225.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1638) AA_kinase PF00696.28 gi|124027906|ref|YP_001013226.1| - 1.8e-32 112.9 0.0 6e-32 111.1 0.0 1.7 1 1 0 1 1 1 1 Amino acid kinase family DUF99 PF01949.16 gi|124027906|ref|YP_001013226.1| - 0.052 13.0 0.0 0.083 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF99 ANF_receptor PF01094.28 gi|124027906|ref|YP_001013226.1| - 0.22 10.6 0.0 0.23 10.5 0.0 1.1 1 0 0 1 1 1 0 Receptor family ligand binding region MgtE PF01769.16 gi|124027907|ref|YP_001013227.1| - 6.6e-26 91.1 10.1 1.1e-25 90.4 10.1 1.4 1 0 0 1 1 1 1 Divalent cation transporter MgtE_N PF03448.17 gi|124027907|ref|YP_001013227.1| - 3.3e-21 75.8 0.4 1.2e-20 74.0 0.1 2.2 2 0 0 2 2 2 1 MgtE intracellular N domain CBS PF00571.28 gi|124027907|ref|YP_001013227.1| - 3.9e-19 68.8 4.0 2.6e-08 34.2 0.1 3.9 4 0 0 4 4 4 2 CBS domain ACT PF01842.25 gi|124027907|ref|YP_001013227.1| - 1.7e-07 30.9 0.1 4.7e-06 26.3 0.0 3.3 3 0 0 3 3 3 1 ACT domain FliG_M PF14841.6 gi|124027907|ref|YP_001013227.1| - 0.00016 21.8 7.3 0.0012 19.1 0.2 5.0 5 1 1 6 6 6 1 FliG middle domain ACT_6 PF13740.6 gi|124027907|ref|YP_001013227.1| - 0.0014 18.6 0.3 0.016 15.2 0.0 3.0 3 1 1 4 4 4 1 ACT domain ACT_4 PF13291.6 gi|124027907|ref|YP_001013227.1| - 0.0042 17.6 0.0 0.011 16.3 0.0 1.7 1 0 0 1 1 1 1 ACT domain baeRF_family10 PF18854.1 gi|124027907|ref|YP_001013227.1| - 0.024 14.9 4.1 0.053 13.8 0.4 2.9 2 1 1 3 3 3 0 Bacterial archaeo-eukaryotic release factor family 10 sCache_3_2 PF17203.4 gi|124027907|ref|YP_001013227.1| - 0.11 12.6 0.1 1.2 9.2 0.1 2.6 1 1 1 2 2 2 0 Single cache domain 3 DUF2061 PF09834.9 gi|124027907|ref|YP_001013227.1| - 7.7 7.1 7.3 50 4.5 0.6 2.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2061) AP_endonuc_2 PF01261.24 gi|124027908|ref|YP_001013228.1| - 4.6e-26 91.6 0.7 5.6e-26 91.3 0.7 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|124027908|ref|YP_001013228.1| - 0.0015 17.9 0.1 0.0056 16.0 0.1 1.8 1 1 0 1 1 1 1 UV-endonuclease UvdE YcaO PF02624.16 gi|124027908|ref|YP_001013228.1| - 0.026 13.8 0.1 0.14 11.4 0.1 2.0 1 1 1 2 2 2 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding Peptidase_M48 PF01435.18 gi|124027909|ref|YP_001013229.1| - 7.5e-05 22.6 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 FeS_assembly_P PF01883.19 gi|124027911|ref|YP_001013231.1| - 2.8e-05 24.2 0.0 3.7e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein DUF5063 PF16702.5 gi|124027912|ref|YP_001013232.1| - 0.017 15.5 0.0 0.025 15.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5063) Aminotran_1_2 PF00155.21 gi|124027913|ref|YP_001013233.1| - 3.9e-72 243.4 0.0 4.4e-72 243.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|124027913|ref|YP_001013233.1| - 1e-12 48.1 0.0 2.2e-12 47.0 0.0 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|124027913|ref|YP_001013233.1| - 5.2e-09 35.5 0.0 1.2e-08 34.3 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|124027913|ref|YP_001013233.1| - 5.5e-05 22.6 0.0 9.5e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|124027913|ref|YP_001013233.1| - 9.2e-05 21.1 0.0 0.00014 20.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|124027913|ref|YP_001013233.1| - 0.0015 17.3 0.0 0.0026 16.5 0.0 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain PALP PF00291.25 gi|124027913|ref|YP_001013233.1| - 0.0032 16.9 0.0 0.0053 16.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme QueC PF06508.13 gi|124027914|ref|YP_001013234.1| - 6.1e-41 140.2 0.0 8.8e-41 139.7 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|124027914|ref|YP_001013234.1| - 0.00023 20.8 0.0 0.00034 20.3 0.0 1.3 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueF PF14489.6 gi|124027916|ref|YP_001013236.1| - 1.8e-05 24.8 0.0 3.4e-05 23.9 0.0 1.5 2 0 0 2 2 2 1 QueF-like protein GTP_cyclohydroI PF01227.22 gi|124027916|ref|YP_001013236.1| - 0.0014 18.1 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 GTP cyclohydrolase I QueF_N PF14819.6 gi|124027916|ref|YP_001013236.1| - 0.079 13.3 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Acyl_transf_3 PF01757.22 gi|124027916|ref|YP_001013236.1| - 0.18 10.8 0.0 0.22 10.5 0.0 1.0 1 0 0 1 1 1 0 Acyltransferase family Thg1 PF04446.12 gi|124027917|ref|YP_001013237.1| - 1.3e-12 47.8 0.0 1.9e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Molybdopterin PF00384.22 gi|124027919|ref|YP_001013239.1| - 1.8e-39 136.0 0.4 2.2e-34 119.2 0.0 3.1 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|124027919|ref|YP_001013239.1| - 9.7e-17 60.7 0.4 2.7e-16 59.3 0.4 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.21 gi|124027919|ref|YP_001013239.1| - 8.2e-13 48.4 0.0 2.5e-12 46.8 0.0 1.9 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain MazE_antitoxin PF04014.18 gi|124027919|ref|YP_001013239.1| - 0.0034 17.3 0.0 0.013 15.4 0.0 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Fip1 PF05182.13 gi|124027919|ref|YP_001013239.1| - 0.47 10.0 3.1 0.95 9.0 0.9 2.5 2 0 0 2 2 2 0 Fip1 motif Fer4_11 PF13247.6 gi|124027920|ref|YP_001013240.1| - 1.1e-27 96.1 11.7 1.1e-27 96.1 11.7 1.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|124027920|ref|YP_001013240.1| - 6.8e-16 58.6 20.1 8.5e-08 32.7 3.5 3.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|124027920|ref|YP_001013240.1| - 1.4e-13 50.8 22.1 3.3e-07 30.4 9.7 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|124027920|ref|YP_001013240.1| - 5.2e-12 45.7 27.2 1.4e-06 28.3 10.5 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124027920|ref|YP_001013240.1| - 4.8e-10 38.9 30.9 0.00091 19.2 2.5 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.27 gi|124027920|ref|YP_001013240.1| - 5.8e-10 38.6 47.6 2.1e-06 27.3 4.3 5.2 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|124027920|ref|YP_001013240.1| - 5.6e-08 32.8 30.2 5.2e-07 29.7 11.1 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124027920|ref|YP_001013240.1| - 3.9e-07 30.9 28.1 0.066 14.1 2.5 4.8 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|124027920|ref|YP_001013240.1| - 4.7e-07 29.6 42.1 0.0017 18.3 4.8 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|124027920|ref|YP_001013240.1| - 2e-06 28.4 40.2 0.16 13.0 4.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|124027920|ref|YP_001013240.1| - 0.00017 21.9 33.6 0.0052 17.2 1.5 4.6 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|124027920|ref|YP_001013240.1| - 0.0031 17.9 30.5 0.1 13.1 10.4 4.2 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|124027920|ref|YP_001013240.1| - 0.0077 16.4 4.5 0.0077 16.4 4.5 3.8 2 1 2 4 4 4 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|124027920|ref|YP_001013240.1| - 0.43 11.1 32.0 0.21 12.2 3.0 4.4 1 1 4 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|124027920|ref|YP_001013240.1| - 0.83 10.4 21.7 3.7 8.4 0.2 4.3 4 0 0 4 4 4 0 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|124027920|ref|YP_001013240.1| - 1.1 9.4 11.8 0.62 10.2 0.2 2.8 2 1 1 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Ni_hydr_CYTB PF01292.20 gi|124027921|ref|YP_001013241.1| - 2.2e-14 53.5 13.8 3.2e-14 53.0 13.8 1.2 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 gi|124027921|ref|YP_001013241.1| - 3.6e-09 37.0 24.6 2e-06 28.2 11.8 2.9 2 1 0 2 2 2 2 Domain of unknown function (DUF4405) Saf_2TM PF18303.1 gi|124027921|ref|YP_001013241.1| - 0.033 13.8 10.3 0.17 11.4 0.1 3.4 2 2 0 3 3 3 0 SAVED-fused 2TM effector domain FdhD-NarQ PF02634.15 gi|124027922|ref|YP_001013242.1| - 4.5e-11 42.9 1.2 4.1e-08 33.2 1.0 2.1 1 1 0 2 2 2 2 FdhD/NarQ family FdhE PF04216.12 gi|124027923|ref|YP_001013243.1| - 6.4e-16 59.1 0.2 1.6e-15 57.8 0.1 1.7 1 1 1 2 2 2 1 Protein involved in formate dehydrogenase formation Zn_Tnp_IS1595 PF12760.7 gi|124027923|ref|YP_001013243.1| - 0.00019 21.4 12.1 0.004 17.1 2.0 2.6 1 1 1 2 2 2 2 Transposase zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|124027923|ref|YP_001013243.1| - 0.015 15.5 0.5 0.43 10.9 0.2 2.6 2 0 0 2 2 2 0 Ribosomal L32p protein family zf-HIT PF04438.16 gi|124027923|ref|YP_001013243.1| - 0.017 15.0 10.8 0.034 14.0 1.0 3.1 3 0 0 3 3 3 0 HIT zinc finger PKS_DE PF18369.1 gi|124027923|ref|YP_001013243.1| - 0.025 15.1 0.6 18 6.0 0.1 3.3 2 0 0 2 2 2 0 Polyketide synthase dimerisation element domain Lar_restr_allev PF14354.6 gi|124027923|ref|YP_001013243.1| - 0.12 12.8 5.4 21 5.6 5.6 2.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF4411 PF14367.6 gi|124027923|ref|YP_001013243.1| - 0.34 10.8 0.7 16 5.3 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4411) OrfB_Zn_ribbon PF07282.11 gi|124027923|ref|YP_001013243.1| - 0.36 10.8 5.1 4 7.4 0.7 2.8 2 1 0 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|124027923|ref|YP_001013243.1| - 0.58 10.1 7.7 0.28 11.1 2.0 2.3 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 gi|124027923|ref|YP_001013243.1| - 0.83 9.8 11.0 3.5 7.8 2.5 3.3 3 0 0 3 3 3 0 Zinc ribbon domain HypA PF01155.19 gi|124027923|ref|YP_001013243.1| - 0.89 9.6 7.3 0.16 12.0 1.2 2.6 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|124027923|ref|YP_001013243.1| - 1.6 8.7 3.9 2.9 8.0 1.5 2.4 2 1 1 3 3 3 0 zinc-ribbons DZR PF12773.7 gi|124027923|ref|YP_001013243.1| - 2.7 8.1 7.9 18 5.4 7.9 2.3 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|124027923|ref|YP_001013243.1| - 5.8 6.5 7.9 9.9 5.8 1.0 3.3 3 1 0 3 3 3 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|124027923|ref|YP_001013243.1| - 6.8 6.8 7.5 8.4 6.5 2.0 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Beta_propel PF09826.9 gi|124027924|ref|YP_001013244.1| - 3.5e-06 26.1 0.0 3.6e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Beta propeller domain MNSV_P7B PF06692.11 gi|124027924|ref|YP_001013244.1| - 0.074 13.1 0.0 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 Melon necrotic spot virus P7B protein Beta_propel PF09826.9 gi|124027925|ref|YP_001013245.1| - 1.4e-52 179.3 0.0 1.8e-51 175.6 0.0 2.2 1 1 0 1 1 1 1 Beta propeller domain PQQ_2 PF13360.6 gi|124027925|ref|YP_001013245.1| - 0.13 11.8 0.1 0.48 10.0 0.1 1.9 1 1 0 1 1 1 0 PQQ-like domain Pas_Saposin PF09016.10 gi|124027927|ref|YP_001013247.1| - 0.057 13.8 1.8 0.82 10.0 0.1 3.4 2 1 0 2 2 2 0 Pas factor saposin fold Synaptobrevin PF00957.21 gi|124027927|ref|YP_001013247.1| - 0.16 11.8 1.7 16 5.4 0.0 3.7 3 0 0 3 3 3 0 Synaptobrevin DUF2802 PF10975.8 gi|124027927|ref|YP_001013247.1| - 2.7 8.2 12.1 1.1 9.4 0.2 4.6 5 1 0 5 5 5 0 Protein of unknown function (DUF2802) TPR_12 PF13424.6 gi|124027927|ref|YP_001013247.1| - 4.4 7.7 25.5 2.9 8.2 0.4 5.4 5 3 1 6 6 6 0 Tetratricopeptide repeat HTH_24 PF13412.6 gi|124027928|ref|YP_001013248.1| - 1.7e-12 46.7 0.0 1.4e-11 43.8 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|124027928|ref|YP_001013248.1| - 1.1e-07 31.5 0.5 2.3e-07 30.5 0.5 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|124027928|ref|YP_001013248.1| - 1.2e-05 25.1 1.0 0.00013 21.8 0.2 2.7 3 1 0 3 3 3 1 MarR family HTH_AsnC-type PF13404.6 gi|124027928|ref|YP_001013248.1| - 3.6e-05 23.5 0.4 7e-05 22.6 0.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|124027928|ref|YP_001013248.1| - 0.00017 21.5 0.1 0.00044 20.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain RskA PF10099.9 gi|124027928|ref|YP_001013248.1| - 0.00096 19.5 9.6 0.0024 18.2 4.1 2.2 2 0 0 2 2 2 1 Anti-sigma-K factor rskA HTH_5 PF01022.20 gi|124027928|ref|YP_001013248.1| - 0.002 18.0 0.0 0.0041 16.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|124027928|ref|YP_001013248.1| - 0.0026 17.7 0.1 0.0053 16.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|124027928|ref|YP_001013248.1| - 0.0033 17.3 0.1 0.041 13.8 0.1 2.5 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|124027928|ref|YP_001013248.1| - 0.0045 16.8 0.0 0.013 15.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|124027928|ref|YP_001013248.1| - 0.01 16.3 0.2 0.24 11.9 0.1 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_psq PF05225.16 gi|124027928|ref|YP_001013248.1| - 0.01 15.6 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Trp_oprn_chp PF09534.10 gi|124027928|ref|YP_001013248.1| - 0.01 15.6 2.0 0.01 15.6 2.0 2.2 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) RP-C PF03428.13 gi|124027928|ref|YP_001013248.1| - 0.015 15.0 0.1 0.033 13.8 0.0 1.6 2 0 0 2 2 2 0 Replication protein C N-terminal domain DUF4366 PF14283.6 gi|124027928|ref|YP_001013248.1| - 0.033 14.2 0.1 0.069 13.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) HTH_34 PF13601.6 gi|124027928|ref|YP_001013248.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Pyr_redox_2 PF07992.14 gi|124027929|ref|YP_001013249.1| - 1.8e-62 211.2 2.0 1.8e-62 211.2 2.0 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|124027929|ref|YP_001013249.1| - 8.6e-25 87.1 0.2 1.6e-24 86.3 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|124027929|ref|YP_001013249.1| - 1.9e-21 76.4 4.8 6.3e-19 68.3 0.2 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|124027929|ref|YP_001013249.1| - 1.2e-12 47.7 0.1 6.6e-12 45.3 0.1 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|124027929|ref|YP_001013249.1| - 9.4e-11 41.7 4.7 5.2e-07 29.4 0.4 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|124027929|ref|YP_001013249.1| - 2.3e-09 36.8 14.6 0.00018 20.8 2.3 3.7 2 2 2 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|124027929|ref|YP_001013249.1| - 1.4e-08 33.9 4.5 0.065 11.9 0.0 3.5 4 0 0 4 4 4 3 HI0933-like protein FAD_binding_2 PF00890.24 gi|124027929|ref|YP_001013249.1| - 8e-07 28.5 9.1 3.1e-05 23.3 1.5 3.1 3 0 0 3 3 3 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|124027929|ref|YP_001013249.1| - 9e-06 25.1 2.0 0.0024 17.2 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|124027929|ref|YP_001013249.1| - 1.8e-05 24.0 0.0 0.00022 20.5 0.0 2.1 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|124027929|ref|YP_001013249.1| - 3.5e-05 23.2 3.6 0.0014 17.9 0.3 2.4 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|124027929|ref|YP_001013249.1| - 5.4e-05 23.3 4.6 0.095 12.9 0.7 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|124027929|ref|YP_001013249.1| - 0.00034 19.9 1.2 0.083 12.1 0.2 2.5 2 0 0 2 2 2 2 Thi4 family 3HCDH_N PF02737.18 gi|124027929|ref|YP_001013249.1| - 0.00039 20.3 1.3 0.019 14.9 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|124027929|ref|YP_001013249.1| - 0.00056 19.9 0.1 0.00056 19.9 0.1 3.1 3 1 1 4 4 4 1 FAD-NAD(P)-binding DAO PF01266.24 gi|124027929|ref|YP_001013249.1| - 0.0025 17.5 16.5 0.12 12.0 0.1 3.8 3 1 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|124027929|ref|YP_001013249.1| - 0.02 15.3 0.7 0.11 13.0 0.1 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding Amino_oxidase PF01593.24 gi|124027929|ref|YP_001013249.1| - 0.032 13.5 0.2 0.061 12.6 0.2 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|124027929|ref|YP_001013249.1| - 0.042 12.9 10.2 0.43 9.6 0.2 3.5 3 1 1 4 4 4 0 Lycopene cyclase protein XdhC_C PF13478.6 gi|124027929|ref|YP_001013249.1| - 0.065 13.7 0.2 15 6.1 0.1 2.8 2 1 0 2 2 2 0 XdhC Rossmann domain Trp_halogenase PF04820.14 gi|124027929|ref|YP_001013249.1| - 0.17 10.7 3.5 0.73 8.6 0.1 2.7 3 0 0 3 3 3 0 Tryptophan halogenase Thiamine_BP PF01910.17 gi|124027931|ref|YP_001013251.1| - 7.7e-25 86.6 0.4 9.5e-25 86.3 0.4 1.1 1 0 0 1 1 1 1 Thiamine-binding protein EIIBC-GUT_N PF03612.14 gi|124027931|ref|YP_001013251.1| - 0.08 12.7 0.1 0.13 12.0 0.0 1.4 2 0 0 2 2 2 0 Sorbitol phosphotransferase enzyme II N-terminus NMD3 PF04981.13 gi|124027932|ref|YP_001013252.1| - 4.3e-43 147.5 0.0 5.7e-43 147.1 0.0 1.2 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|124027932|ref|YP_001013252.1| - 0.012 15.6 1.2 0.31 11.1 0.4 2.4 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|124027932|ref|YP_001013252.1| - 0.045 13.9 3.4 14 5.9 0.0 3.4 3 0 0 3 3 3 0 Zinc ribbon domain DUF4428 PF14471.6 gi|124027932|ref|YP_001013252.1| - 0.46 10.5 3.1 8.4 6.4 0.3 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4428) zinc_ribbon_9 PF14369.6 gi|124027932|ref|YP_001013252.1| - 1.6 9.1 5.8 40 4.6 0.0 3.4 3 0 0 3 3 3 0 zinc-ribbon Amidohydro_3 PF07969.11 gi|124027933|ref|YP_001013253.1| - 5.4e-91 306.4 0.9 6.8e-91 306.1 0.9 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|124027933|ref|YP_001013253.1| - 2e-14 53.6 0.0 5.3e-09 35.8 0.0 2.9 2 1 0 2 2 2 2 Amidohydrolase family TP_methylase PF00590.20 gi|124027933|ref|YP_001013253.1| - 0.018 15.0 0.2 0.056 13.4 0.0 1.9 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases CitG PF01874.16 gi|124027934|ref|YP_001013254.1| - 1.4e-10 41.3 1.2 8.5e-10 38.7 1.2 1.9 1 1 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase KORA PF16509.5 gi|124027935|ref|YP_001013255.1| - 0.027 14.7 0.2 0.055 13.7 0.1 1.6 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor DUF3008 PF11450.8 gi|124027935|ref|YP_001013255.1| - 0.058 13.6 0.3 0.058 13.6 0.3 1.7 2 1 0 2 2 2 0 Protein of unknwon function (DUF3008) DEAD PF00270.29 gi|124027936|ref|YP_001013256.1| - 8.4e-19 68.0 0.0 1.8e-18 66.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|124027936|ref|YP_001013256.1| - 1.7e-14 54.1 0.0 3.3e-14 53.2 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|124027936|ref|YP_001013256.1| - 0.0001 22.4 0.0 0.00017 21.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF4350 PF14258.6 gi|124027936|ref|YP_001013256.1| - 0.0019 18.6 0.2 0.29 11.6 0.0 4.1 3 1 1 4 4 4 1 Domain of unknown function (DUF4350) AAA_30 PF13604.6 gi|124027936|ref|YP_001013256.1| - 0.025 14.3 0.0 0.052 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|124027936|ref|YP_001013256.1| - 0.13 12.0 0.0 0.49 10.1 0.0 2.0 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF2644 PF10841.8 gi|124027937|ref|YP_001013257.1| - 0.12 12.6 0.2 4.5 7.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2644) Diphthami_syn_2 PF01902.17 gi|124027938|ref|YP_001013258.1| - 1.2e-51 175.4 0.0 1.4e-51 175.1 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|124027938|ref|YP_001013258.1| - 0.0021 17.6 0.0 0.039 13.5 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC EAL PF00563.20 gi|124027938|ref|YP_001013258.1| - 0.086 12.3 0.1 0.52 9.8 0.0 1.9 1 1 1 2 2 2 0 EAL domain AAA_33 PF13671.6 gi|124027938|ref|YP_001013258.1| - 0.087 13.0 0.0 1.3 9.1 0.1 2.3 1 1 2 3 3 3 0 AAA domain ATP_bind_3 PF01171.20 gi|124027938|ref|YP_001013258.1| - 0.2 11.4 0.0 6.4 6.5 0.0 2.1 1 1 1 2 2 2 0 PP-loop family PNP_UDP_1 PF01048.20 gi|124027941|ref|YP_001013261.1| - 7.7e-27 94.1 0.0 8.7e-27 93.9 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily AdoMet_dc PF02675.15 gi|124027942|ref|YP_001013262.1| - 3.1e-35 120.6 0.1 3.5e-35 120.4 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.6 gi|124027942|ref|YP_001013262.1| - 0.096 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Stage VI sporulation protein F SurE PF01975.17 gi|124027944|ref|YP_001013264.1| - 2.2e-50 171.2 0.0 3.4e-50 170.5 0.0 1.2 1 0 0 1 1 1 1 Survival protein SurE DUF1152 PF06626.12 gi|124027945|ref|YP_001013265.1| - 2e-102 342.4 4.3 2.3e-102 342.2 4.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) VbhA PF18495.1 gi|124027945|ref|YP_001013265.1| - 0.13 12.1 1.1 1.8 8.5 0.1 2.6 2 0 0 2 2 2 0 Antitoxin VbhA PGM_PMM_I PF02878.16 gi|124027946|ref|YP_001013266.1| - 5e-41 139.6 0.0 9.9e-41 138.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|124027946|ref|YP_001013266.1| - 5.7e-23 81.5 0.0 1.5e-22 80.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|124027946|ref|YP_001013266.1| - 1.6e-20 73.4 0.0 3.8e-20 72.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|124027946|ref|YP_001013266.1| - 1.5e-14 53.9 0.4 3.5e-14 52.7 0.4 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Trm112p PF03966.16 gi|124027947|ref|YP_001013267.1| - 6.3e-12 45.9 5.8 1.6e-11 44.6 5.8 1.7 1 1 0 1 1 1 1 Trm112p-like protein DUF35_N PF12172.8 gi|124027947|ref|YP_001013267.1| - 0.063 13.2 0.6 0.46 10.4 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RING_7 PF02591.15 gi|124027947|ref|YP_001013267.1| - 0.13 12.5 0.8 0.13 12.5 0.8 2.3 3 0 0 3 3 3 0 C4-type zinc ribbon domain HypA PF01155.19 gi|124027947|ref|YP_001013267.1| - 0.21 11.6 0.9 0.49 10.4 0.5 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|124027947|ref|YP_001013267.1| - 0.59 10.9 4.1 1.3 9.8 4.1 1.7 1 1 0 1 1 1 0 zinc-ribbon family DZR PF12773.7 gi|124027947|ref|YP_001013267.1| - 1.2 9.3 5.3 1.5 8.9 2.5 2.1 2 0 0 2 2 2 0 Double zinc ribbon MazE_antitoxin PF04014.18 gi|124027948|ref|YP_001013268.1| - 0.015 15.2 0.1 0.019 14.9 0.1 1.4 1 1 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|124027948|ref|YP_001013268.1| - 0.047 13.5 0.1 0.055 13.3 0.1 1.2 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 CDC48_N PF02359.18 gi|124027948|ref|YP_001013268.1| - 0.082 13.1 0.0 0.084 13.1 0.0 1.1 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain DUF1905 PF08922.11 gi|124027948|ref|YP_001013268.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) HSP20 PF00011.21 gi|124027949|ref|YP_001013269.1| - 1.3e-05 25.3 0.0 1.7e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|124027949|ref|YP_001013269.1| - 0.0083 15.7 0.0 0.014 14.9 0.0 1.4 1 1 0 1 1 1 1 HSP20-like domain found in ArsA Cep57_CLD_2 PF14197.6 gi|124027949|ref|YP_001013269.1| - 0.025 14.7 0.3 0.046 13.8 0.3 1.4 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 HalX PF08663.10 gi|124027949|ref|YP_001013269.1| - 0.063 13.6 1.3 0.063 13.6 1.3 1.7 2 0 0 2 2 2 0 HalX domain PAC2 PF09754.9 gi|124027950|ref|YP_001013270.1| - 2.3e-34 119.3 0.3 2.6e-34 119.1 0.3 1.0 1 0 0 1 1 1 1 PAC2 family PIG-F PF06699.11 gi|124027951|ref|YP_001013271.1| - 0.021 15.0 0.2 0.025 14.8 0.2 1.1 1 0 0 1 1 1 0 GPI biosynthesis protein family Pig-F DUF2760 PF10816.8 gi|124027951|ref|YP_001013271.1| - 0.048 13.5 0.0 11 5.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2760) DUF424 PF04242.13 gi|124027953|ref|YP_001013273.1| - 1.3e-30 105.5 0.0 1.4e-30 105.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) eIF-5_eIF-2B PF01873.17 gi|124027954|ref|YP_001013274.1| - 1.6e-35 121.5 0.0 1.9e-35 121.3 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.6 gi|124027954|ref|YP_001013274.1| - 0.01 16.2 0.7 0.017 15.5 0.7 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Prok-RING_1 PF14446.6 gi|124027954|ref|YP_001013274.1| - 0.016 15.1 0.5 0.46 10.4 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.11 gi|124027954|ref|YP_001013274.1| - 0.019 14.6 2.7 0.075 12.7 2.7 1.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|124027954|ref|YP_001013274.1| - 0.028 13.8 1.3 0.41 10.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|124027954|ref|YP_001013274.1| - 0.043 13.3 1.1 0.085 12.4 0.3 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|124027954|ref|YP_001013274.1| - 0.05 13.6 0.8 12 6.0 0.2 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-RING_7 PF02591.15 gi|124027954|ref|YP_001013274.1| - 0.053 13.7 0.2 1.9 8.7 0.0 2.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|124027954|ref|YP_001013274.1| - 0.08 13.1 0.2 2.4 8.4 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|124027954|ref|YP_001013274.1| - 0.18 11.7 0.5 0.36 10.8 0.1 1.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf_C2H2_13 PF18508.1 gi|124027954|ref|YP_001013274.1| - 0.19 11.3 0.5 7.7 6.2 0.0 2.3 2 0 0 2 2 2 0 Zinc finger domain A2L_zn_ribbon PF08792.10 gi|124027954|ref|YP_001013274.1| - 0.22 11.3 0.9 11 5.9 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-Sec23_Sec24 PF04810.15 gi|124027954|ref|YP_001013274.1| - 0.28 11.3 1.7 7.6 6.7 1.7 2.3 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger zinc_ribbon_2 PF13240.6 gi|124027954|ref|YP_001013274.1| - 0.35 10.6 2.2 11 5.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.27 gi|124027954|ref|YP_001013274.1| - 0.49 10.0 2.1 0.86 9.3 2.1 1.4 1 0 0 1 1 1 0 GATA zinc finger Prenyltransf PF01255.19 gi|124027955|ref|YP_001013275.1| - 5.7e-60 202.6 0.0 6.6e-60 202.4 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF373 PF04123.13 gi|124027956|ref|YP_001013276.1| - 5.8e-82 275.8 12.6 1.1e-81 274.9 12.2 1.5 1 1 1 2 2 2 2 Domain of unknown function (DUF373) DUF981 PF06168.11 gi|124027956|ref|YP_001013276.1| - 0.72 9.7 15.8 0.15 12.0 10.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF981) DUF3382 PF11862.8 gi|124027956|ref|YP_001013276.1| - 8 6.8 11.0 51 4.2 6.6 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF3382) Seryl_tRNA_N PF02403.22 gi|124027957|ref|YP_001013277.1| - 2.2e-06 27.8 35.7 0.0092 16.2 7.2 4.8 2 1 1 4 4 4 3 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.11 gi|124027957|ref|YP_001013277.1| - 9e-06 25.9 7.5 0.02 15.2 0.1 4.0 1 1 3 4 4 4 2 Bacterial protein of unknown function (DUF948) DUF1192 PF06698.11 gi|124027957|ref|YP_001013277.1| - 9.2e-06 25.6 43.1 0.00029 20.8 3.2 7.2 5 2 2 7 7 7 2 Protein of unknown function (DUF1192) Mod_r PF07200.13 gi|124027957|ref|YP_001013277.1| - 5e-05 23.5 7.9 5e-05 23.5 7.9 3.2 1 1 1 3 3 3 1 Modifier of rudimentary (Mod(r)) protein FlaC_arch PF05377.11 gi|124027957|ref|YP_001013277.1| - 5e-05 23.6 2.0 0.0041 17.5 0.3 5.0 2 2 4 6 6 5 2 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|124027957|ref|YP_001013277.1| - 8.3e-05 21.6 39.9 0.0016 17.4 15.4 2.6 1 1 1 2 2 2 2 Spc7 kinetochore protein TolA_bind_tri PF16331.5 gi|124027957|ref|YP_001013277.1| - 9.8e-05 22.4 0.1 9.8e-05 22.4 0.1 5.0 4 2 2 6 6 4 1 TolA binding protein trimerisation Fez1 PF06818.15 gi|124027957|ref|YP_001013277.1| - 0.00014 22.4 12.9 0.00014 22.4 12.9 2.2 1 1 1 2 2 2 1 Fez1 DUF2935 PF11155.8 gi|124027957|ref|YP_001013277.1| - 0.00015 22.1 0.8 0.64 10.4 0.0 2.8 2 2 0 2 2 2 2 Domain of unknown function (DUF2935) Baculo_PEP_C PF04513.12 gi|124027957|ref|YP_001013277.1| - 0.00024 21.1 10.4 0.001 19.1 0.6 3.3 1 1 2 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.9 gi|124027957|ref|YP_001013277.1| - 0.00028 20.1 15.2 0.00028 20.1 15.2 2.3 1 1 1 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 LPP PF04728.13 gi|124027957|ref|YP_001013277.1| - 0.00031 21.1 3.2 0.11 12.9 0.7 4.4 2 2 2 4 4 4 1 Lipoprotein leucine-zipper ATG16 PF08614.11 gi|124027957|ref|YP_001013277.1| - 0.00033 21.0 46.5 0.0059 16.9 15.4 3.2 1 1 0 2 2 2 2 Autophagy protein 16 (ATG16) IFT57 PF10498.9 gi|124027957|ref|YP_001013277.1| - 0.00034 19.7 23.8 0.0045 16.0 9.0 2.3 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 DUF1664 PF07889.12 gi|124027957|ref|YP_001013277.1| - 0.00038 20.5 22.4 0.0069 16.4 1.7 4.3 1 1 5 6 6 6 2 Protein of unknown function (DUF1664) DUF3584 PF12128.8 gi|124027957|ref|YP_001013277.1| - 0.00074 17.2 35.2 0.00097 16.8 35.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Prefoldin PF02996.17 gi|124027957|ref|YP_001013277.1| - 0.0011 18.9 0.3 0.0011 18.9 0.3 5.5 4 2 1 6 6 5 1 Prefoldin subunit NPV_P10 PF05531.12 gi|124027957|ref|YP_001013277.1| - 0.0013 19.2 8.2 0.0078 16.6 1.0 4.1 2 2 1 3 3 2 1 Nucleopolyhedrovirus P10 protein UPF0242 PF06785.11 gi|124027957|ref|YP_001013277.1| - 0.002 18.3 11.5 0.002 18.3 11.5 3.4 1 1 2 3 3 3 1 Uncharacterised protein family (UPF0242) N-terminus OmpH PF03938.14 gi|124027957|ref|YP_001013277.1| - 0.0024 18.2 37.6 0.033 14.5 6.6 3.2 1 1 2 3 3 3 2 Outer membrane protein (OmpH-like) TPR_MLP1_2 PF07926.12 gi|124027957|ref|YP_001013277.1| - 0.004 17.2 39.3 0.15 12.1 16.0 4.2 2 2 0 2 2 2 2 TPR/MLP1/MLP2-like protein Dynactin_p22 PF07426.11 gi|124027957|ref|YP_001013277.1| - 0.0049 16.7 27.1 0.26 11.1 3.6 4.0 2 2 1 3 3 3 2 Dynactin subunit p22 SKA2 PF16740.5 gi|124027957|ref|YP_001013277.1| - 0.0054 16.5 30.9 0.31 10.8 4.1 4.5 1 1 4 5 5 5 3 Spindle and kinetochore-associated protein 2 Snf7 PF03357.21 gi|124027957|ref|YP_001013277.1| - 0.0074 15.9 6.0 0.0074 15.9 6.0 4.4 1 1 3 4 4 4 1 Snf7 ZapB PF06005.12 gi|124027957|ref|YP_001013277.1| - 0.0079 16.6 2.9 0.0079 16.6 2.9 6.1 2 1 2 4 4 2 1 Cell division protein ZapB Bacillus_HBL PF05791.11 gi|124027957|ref|YP_001013277.1| - 0.008 16.0 12.9 1.6 8.5 0.9 4.0 1 1 3 4 4 4 1 Bacillus haemolytic enterotoxin (HBL) DUF16 PF01519.16 gi|124027957|ref|YP_001013277.1| - 0.0096 16.4 1.1 0.0096 16.4 1.1 4.1 1 1 2 3 3 2 1 Protein of unknown function DUF16 DUF4407 PF14362.6 gi|124027957|ref|YP_001013277.1| - 0.0098 15.3 26.8 0.04 13.3 5.1 2.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4407) Spectrin PF00435.21 gi|124027957|ref|YP_001013277.1| - 0.012 16.0 29.6 0.017 15.6 1.8 3.6 2 1 0 3 3 3 0 Spectrin repeat GAS PF13851.6 gi|124027957|ref|YP_001013277.1| - 0.013 14.9 14.3 0.013 14.9 14.3 3.3 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding FliD_C PF07195.12 gi|124027957|ref|YP_001013277.1| - 0.013 14.9 5.9 0.017 14.5 0.5 2.8 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 C-terminus YabA PF06156.13 gi|124027957|ref|YP_001013277.1| - 0.016 15.8 31.3 0.68 10.6 3.8 4.6 1 1 1 3 3 3 0 Initiation control protein YabA Sec34 PF04136.15 gi|124027957|ref|YP_001013277.1| - 0.017 15.0 10.3 0.35 10.7 0.8 3.4 2 2 1 3 3 3 0 Sec34-like family AAA_13 PF13166.6 gi|124027957|ref|YP_001013277.1| - 0.023 13.4 26.4 0.15 10.7 18.1 2.1 1 1 1 2 2 2 0 AAA domain COG5 PF10392.9 gi|124027957|ref|YP_001013277.1| - 0.024 14.8 2.1 0.024 14.8 2.1 4.2 1 1 2 4 4 4 0 Golgi transport complex subunit 5 Gp58 PF07902.11 gi|124027957|ref|YP_001013277.1| - 0.026 12.8 4.9 0.0084 14.5 1.8 1.5 1 1 0 1 1 1 0 gp58-like protein DUF3450 PF11932.8 gi|124027957|ref|YP_001013277.1| - 0.031 13.6 34.3 3.9 6.7 11.8 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) APG6_N PF17675.1 gi|124027957|ref|YP_001013277.1| - 0.032 14.8 50.8 0.1 13.1 17.8 4.3 1 1 3 4 4 3 0 Apg6 coiled-coil region HsbA PF12296.8 gi|124027957|ref|YP_001013277.1| - 0.036 14.5 1.7 11 6.4 0.1 3.3 1 1 1 3 3 3 0 Hydrophobic surface binding protein A TMF_TATA_bd PF12325.8 gi|124027957|ref|YP_001013277.1| - 0.036 14.3 47.5 0.057 13.6 9.1 4.1 1 1 2 4 4 4 0 TATA element modulatory factor 1 TATA binding HBM PF16591.5 gi|124027957|ref|YP_001013277.1| - 0.043 13.3 28.5 0.11 11.9 4.1 3.0 1 1 2 3 3 3 0 Helical bimodular sensor domain KASH_CCD PF14662.6 gi|124027957|ref|YP_001013277.1| - 0.046 13.6 46.3 0.031 14.1 8.5 3.2 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 or KASH T3SSipB PF16535.5 gi|124027957|ref|YP_001013277.1| - 0.047 14.2 8.1 0.26 11.8 2.3 2.7 1 1 1 2 2 2 0 Type III cell invasion protein SipB HSBP1 PF06825.12 gi|124027957|ref|YP_001013277.1| - 0.05 13.5 0.4 0.05 13.5 0.4 3.4 4 0 0 4 4 2 0 Heat shock factor binding protein 1 EzrA PF06160.12 gi|124027957|ref|YP_001013277.1| - 0.052 11.7 29.7 0.048 11.8 11.9 2.3 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA DivIC PF04977.15 gi|124027957|ref|YP_001013277.1| - 0.074 12.8 44.9 0.1 12.4 6.2 6.3 1 1 5 6 6 6 0 Septum formation initiator Lambda_CIII PF02061.16 gi|124027957|ref|YP_001013277.1| - 0.078 13.1 0.1 0.078 13.1 0.1 3.5 4 1 1 5 5 1 0 Lambda Phage CIII Hemagglutinin PF00509.18 gi|124027957|ref|YP_001013277.1| - 0.097 11.1 0.4 0.18 10.2 0.4 1.3 1 0 0 1 1 1 0 Haemagglutinin Syntaxin_2 PF14523.6 gi|124027957|ref|YP_001013277.1| - 0.12 12.7 26.3 0.29 11.5 6.3 4.3 1 1 2 3 3 3 0 Syntaxin-like protein Lipoprotein_7 PF01540.16 gi|124027957|ref|YP_001013277.1| - 0.17 11.1 11.0 1.4 8.1 10.7 2.3 1 1 0 1 1 1 0 Adhesin lipoprotein bZIP_1 PF00170.21 gi|124027957|ref|YP_001013277.1| - 0.18 11.9 0.3 0.18 11.9 0.3 5.8 2 2 2 5 5 4 0 bZIP transcription factor DUF4618 PF15397.6 gi|124027957|ref|YP_001013277.1| - 0.19 11.2 32.5 0.25 10.8 19.5 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) BLOC1_2 PF10046.9 gi|124027957|ref|YP_001013277.1| - 0.2 12.0 19.8 5.3 7.4 5.5 4.9 2 2 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dam1 PF08653.10 gi|124027957|ref|YP_001013277.1| - 0.29 11.0 8.1 13 5.7 0.1 4.7 4 2 1 5 5 4 0 DASH complex subunit Dam1 Herpes_UL6 PF01763.16 gi|124027957|ref|YP_001013277.1| - 0.34 9.4 20.7 0.32 9.4 1.3 3.2 1 1 1 3 3 3 0 Herpesvirus UL6 like TraF_2 PF13729.6 gi|124027957|ref|YP_001013277.1| - 0.37 10.1 1.8 1 8.7 0.2 2.3 1 1 1 3 3 3 0 F plasmid transfer operon, TraF, protein DUF3368 PF11848.8 gi|124027957|ref|YP_001013277.1| - 0.43 10.4 7.6 20 5.0 0.1 4.6 4 1 1 5 5 3 0 Domain of unknown function (DUF3368) zf-C4H2 PF10146.9 gi|124027957|ref|YP_001013277.1| - 0.44 10.8 32.1 0.71 10.1 16.4 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein TMPIT PF07851.13 gi|124027957|ref|YP_001013277.1| - 0.51 9.5 19.6 0.27 10.4 3.0 2.9 1 1 2 3 3 3 0 TMPIT-like protein Vps51 PF08700.11 gi|124027957|ref|YP_001013277.1| - 0.53 10.4 0.0 0.53 10.4 0.0 5.3 3 2 2 5 5 5 0 Vps51/Vps67 COG2 PF06148.11 gi|124027957|ref|YP_001013277.1| - 0.55 10.3 28.7 0.23 11.6 7.4 3.8 1 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 CENP-H PF05837.12 gi|124027957|ref|YP_001013277.1| - 0.73 10.3 44.0 0.99 9.8 7.8 4.2 1 1 2 4 4 4 0 Centromere protein H (CENP-H) Matrilin_ccoil PF10393.9 gi|124027957|ref|YP_001013277.1| - 0.79 9.6 5.7 10 6.1 0.1 3.7 3 2 1 4 4 2 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF724 PF05266.14 gi|124027957|ref|YP_001013277.1| - 0.83 9.5 31.1 0.18 11.6 4.7 3.4 1 1 3 4 4 4 0 Protein of unknown function (DUF724) MCPsignal PF00015.21 gi|124027957|ref|YP_001013277.1| - 0.96 9.2 12.2 1.1 9.0 1.4 3.2 1 1 3 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Fib_alpha PF08702.10 gi|124027957|ref|YP_001013277.1| - 1 9.6 25.2 0.12 12.6 6.8 4.0 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.6 gi|124027957|ref|YP_001013277.1| - 1.2 9.6 38.6 0.92 10.0 4.3 5.2 1 1 3 4 4 4 0 Snapin/Pallidin Laminin_II PF06009.12 gi|124027957|ref|YP_001013277.1| - 1.2 9.2 24.1 0.51 10.3 4.9 3.0 1 1 2 3 3 3 0 Laminin Domain II DUF4201 PF13870.6 gi|124027957|ref|YP_001013277.1| - 1.3 8.7 42.7 15 5.3 19.2 3.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) DUF812 PF05667.11 gi|124027957|ref|YP_001013277.1| - 1.6 7.5 41.8 0.45 9.3 13.5 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF812) Cauli_DNA-bind PF03310.13 gi|124027957|ref|YP_001013277.1| - 1.6 8.8 11.4 0.47 10.5 1.6 2.9 3 0 0 3 3 2 0 Caulimovirus DNA-binding protein DUF5082 PF16888.5 gi|124027957|ref|YP_001013277.1| - 1.8 8.9 32.6 5.6 7.3 2.1 4.7 1 1 3 4 4 3 0 Domain of unknown function (DUF5082) TMF_DNA_bd PF12329.8 gi|124027957|ref|YP_001013277.1| - 2.3 8.3 46.4 0.072 13.1 4.5 5.6 1 1 3 5 5 4 0 TATA element modulatory factor 1 DNA binding HAUS-augmin3 PF14932.6 gi|124027957|ref|YP_001013277.1| - 2.5 7.6 30.5 0.49 9.9 9.6 2.9 1 1 2 3 3 3 0 HAUS augmin-like complex subunit 3 Prominin PF05478.11 gi|124027957|ref|YP_001013277.1| - 3 5.7 18.4 1.6 6.6 4.2 2.2 1 1 1 2 2 2 0 Prominin Fungal_TACC PF12709.7 gi|124027957|ref|YP_001013277.1| - 3 8.3 22.0 2.3 8.7 3.3 4.8 3 2 2 5 5 5 0 Fungal Transforming acidic coiled-coil (TACC) proteins SCP-1 PF05483.12 gi|124027957|ref|YP_001013277.1| - 3.2 5.6 33.0 0.11 10.4 14.2 2.1 1 1 1 2 2 2 0 Synaptonemal complex protein 1 (SCP-1) FliJ PF02050.16 gi|124027957|ref|YP_001013277.1| - 3.3 7.9 46.4 0.2 11.9 2.6 3.7 1 1 1 3 3 3 0 Flagellar FliJ protein ISG65-75 PF11727.8 gi|124027957|ref|YP_001013277.1| - 3.4 6.8 9.9 5 6.3 0.8 2.3 2 1 0 2 2 2 0 Invariant surface glycoprotein ATP-synt_D PF01813.17 gi|124027957|ref|YP_001013277.1| - 3.4 7.5 36.4 2.9 7.7 17.1 4.0 1 1 2 3 3 3 0 ATP synthase subunit D CENP-F_leu_zip PF10473.9 gi|124027957|ref|YP_001013277.1| - 3.5 7.6 53.3 0.99 9.4 17.4 4.3 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FapA PF03961.13 gi|124027957|ref|YP_001013277.1| - 3.9 6.0 34.6 0.5 8.9 6.3 3.0 1 1 2 3 3 3 0 Flagellar Assembly Protein A Med30 PF11315.8 gi|124027957|ref|YP_001013277.1| - 4.4 7.5 28.6 0.83 9.8 4.0 4.8 1 1 4 5 5 5 0 Mediator complex subunit 30 YkyA PF10368.9 gi|124027957|ref|YP_001013277.1| - 4.9 6.8 30.9 0.27 10.9 7.6 3.4 1 1 1 3 3 3 0 Putative cell-wall binding lipoprotein Tup_N PF08581.10 gi|124027957|ref|YP_001013277.1| - 5.1 7.5 31.6 0.56 10.5 1.3 5.0 2 2 3 5 5 4 0 Tup N-terminal eIF3_N PF09440.10 gi|124027957|ref|YP_001013277.1| - 6.6 7.2 17.5 1.3 9.5 1.7 3.6 1 1 2 4 4 4 0 eIF3 subunit 6 N terminal domain Prefoldin_2 PF01920.20 gi|124027957|ref|YP_001013277.1| - 7.4 6.6 37.5 3.9 7.5 3.2 6.0 1 1 3 5 5 5 0 Prefoldin subunit BRE1 PF08647.11 gi|124027957|ref|YP_001013277.1| - 8.2 6.6 30.8 1.7 8.8 4.3 4.6 1 1 4 5 5 5 0 BRE1 E3 ubiquitin ligase TSC22 PF01166.18 gi|124027957|ref|YP_001013277.1| - 9.2 6.7 32.9 0.86 10.0 1.9 5.9 3 3 5 8 8 5 0 TSC-22/dip/bun family WXG100 PF06013.12 gi|124027957|ref|YP_001013277.1| - 9.2 6.6 9.2 17 5.7 0.3 4.3 3 2 2 5 5 4 0 Proteins of 100 residues with WXG Cluap1 PF10234.9 gi|124027957|ref|YP_001013277.1| - 9.4 5.5 37.9 0.72 9.2 12.2 3.2 1 1 2 3 3 3 0 Clusterin-associated protein-1 SWIM PF04434.17 gi|124027958|ref|YP_001013278.1| - 0.0013 18.3 1.8 0.0033 17.0 1.8 1.7 1 1 0 1 1 1 1 SWIM zinc finger BPL_C PF02237.17 gi|124027958|ref|YP_001013278.1| - 0.075 12.9 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain Rib_5-P_isom_A PF06026.14 gi|124027959|ref|YP_001013279.1| - 1.1e-42 145.6 0.0 1.3e-42 145.3 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|124027959|ref|YP_001013279.1| - 0.013 15.5 0.1 0.38 10.7 0.0 2.1 2 0 0 2 2 2 0 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|124027959|ref|YP_001013279.1| - 0.027 13.6 0.0 0.045 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain Radical_SAM PF04055.21 gi|124027960|ref|YP_001013280.1| - 3.6e-26 92.5 0.3 6.1e-26 91.8 0.3 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|124027960|ref|YP_001013280.1| - 1.8e-23 82.4 0.4 3e-23 81.7 0.4 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 FliG_N PF14842.6 gi|124027960|ref|YP_001013280.1| - 0.073 13.6 0.0 0.16 12.5 0.0 1.5 1 0 0 1 1 1 0 FliG N-terminal domain fn1 PF00039.18 gi|124027960|ref|YP_001013280.1| - 0.13 12.4 0.3 0.13 12.4 0.3 1.8 2 0 0 2 2 2 0 Fibronectin type I domain ThiS PF02597.20 gi|124027961|ref|YP_001013281.1| - 1.1e-14 54.9 0.2 1.5e-14 54.4 0.2 1.2 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|124027961|ref|YP_001013281.1| - 0.0031 17.3 0.1 0.11 12.4 0.0 2.1 2 0 0 2 2 2 1 Mut7-C ubiquitin BAT PF15915.5 gi|124027961|ref|YP_001013281.1| - 0.048 13.5 0.2 0.061 13.2 0.2 1.2 1 0 0 1 1 1 0 GAF and HTH_10 associated domain Polysacc_deac_1 PF01522.21 gi|124027962|ref|YP_001013282.1| - 1.9e-20 73.0 0.0 2.9e-20 72.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_transf_4 PF13439.6 gi|124027963|ref|YP_001013283.1| - 1e-32 113.5 1.8 2.3e-32 112.3 1.8 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|124027963|ref|YP_001013283.1| - 3.7e-28 98.2 0.0 1.5e-27 96.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|124027963|ref|YP_001013283.1| - 1.5e-23 83.7 0.3 6.2e-23 81.7 0.2 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|124027963|ref|YP_001013283.1| - 2.3e-17 63.9 1.5 5.1e-17 62.8 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|124027963|ref|YP_001013283.1| - 5.8e-11 42.6 0.0 1.2e-10 41.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|124027963|ref|YP_001013283.1| - 1.7e-09 37.8 0.2 3.2e-09 36.9 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|124027963|ref|YP_001013283.1| - 0.0073 16.0 0.0 0.022 14.5 0.0 1.8 1 1 1 2 2 2 1 Starch synthase catalytic domain Serine_rich PF08824.10 gi|124027963|ref|YP_001013283.1| - 0.16 12.0 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 Serine rich protein interaction domain LPG_synthase_TM PF03706.13 gi|124027964|ref|YP_001013284.1| - 3.8e-41 141.6 31.4 5.6e-41 141.0 31.4 1.2 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Pox_A9 PF04835.12 gi|124027964|ref|YP_001013284.1| - 1.1 9.5 4.5 0.53 10.5 0.4 2.5 2 0 0 2 2 2 0 A9 protein conserved region MerR-DNA-bind PF09278.11 gi|124027965|ref|YP_001013285.1| - 0.0017 18.8 3.2 0.25 11.9 0.3 2.3 2 0 0 2 2 2 2 MerR, DNA binding Lant_dehydr_N PF04738.13 gi|124027965|ref|YP_001013285.1| - 0.0064 14.6 0.4 0.0067 14.6 0.4 1.0 1 0 0 1 1 1 1 Lantibiotic dehydratase, N terminus P4Ha_N PF08336.11 gi|124027965|ref|YP_001013285.1| - 0.0072 16.3 1.8 2.1 8.4 0.2 2.1 2 0 0 2 2 2 2 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF4795 PF16043.5 gi|124027965|ref|YP_001013285.1| - 0.024 14.2 1.4 0.028 14.0 1.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) FeS_assembly_P PF01883.19 gi|124027965|ref|YP_001013285.1| - 0.056 13.6 0.1 0.11 12.7 0.1 1.5 1 0 0 1 1 1 0 Iron-sulfur cluster assembly protein HR1 PF02185.16 gi|124027965|ref|YP_001013285.1| - 0.2 11.8 6.2 4.3 7.5 0.7 2.7 2 1 0 2 2 2 0 Hr1 repeat Fib_alpha PF08702.10 gi|124027965|ref|YP_001013285.1| - 0.53 10.5 1.9 1.6 8.9 1.9 1.7 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DASH_Dad1 PF08649.10 gi|124027965|ref|YP_001013285.1| - 0.56 10.4 2.6 1.7 8.9 0.2 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad1 CarboxypepD_reg PF13620.6 gi|124027966|ref|YP_001013286.1| - 1.2e-07 31.9 13.1 0.0026 18.0 0.6 5.9 5 1 1 6 6 6 3 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|124027966|ref|YP_001013286.1| - 9.1e-05 22.4 8.5 0.0066 16.4 0.0 4.2 4 0 0 4 4 4 2 Bacterial Ig-like domain (group 1) DUF4198 PF10670.9 gi|124027966|ref|YP_001013286.1| - 0.00054 20.4 0.0 0.0054 17.1 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4198) DUF3244 PF11589.8 gi|124027966|ref|YP_001013286.1| - 0.017 15.2 0.1 3 8.0 0.0 3.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) MG4 PF17789.1 gi|124027966|ref|YP_001013286.1| - 0.032 14.4 0.5 45 4.3 0.0 3.8 4 0 0 4 4 4 0 Macroglobulin domain MG4 MinC_C PF03775.16 gi|124027966|ref|YP_001013286.1| - 0.073 13.1 0.2 0.17 11.9 0.2 1.6 1 0 0 1 1 1 0 Septum formation inhibitor MinC, C-terminal domain T2SSE PF00437.20 gi|124027967|ref|YP_001013287.1| - 3.5e-47 160.7 0.0 4.8e-47 160.3 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 gi|124027967|ref|YP_001013287.1| - 0.0029 17.0 1.1 0.0043 16.5 0.1 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_29 PF13555.6 gi|124027967|ref|YP_001013287.1| - 0.0031 17.2 0.2 0.0065 16.2 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|124027967|ref|YP_001013287.1| - 0.0069 15.9 0.1 0.014 14.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|124027967|ref|YP_001013287.1| - 0.0092 16.4 0.0 0.019 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|124027967|ref|YP_001013287.1| - 0.0094 16.5 0.0 0.019 15.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|124027967|ref|YP_001013287.1| - 0.015 15.6 0.0 0.031 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|124027967|ref|YP_001013287.1| - 0.037 13.7 0.4 0.085 12.5 0.3 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Viral_helicase1 PF01443.18 gi|124027967|ref|YP_001013287.1| - 0.037 13.8 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF87 PF01935.17 gi|124027967|ref|YP_001013287.1| - 0.11 12.6 1.9 0.32 11.1 1.9 1.8 1 0 0 1 1 1 0 Helicase HerA, central domain T2SSF PF00482.23 gi|124027968|ref|YP_001013288.1| - 8e-23 80.8 5.0 4.5e-13 49.3 0.3 4.5 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F TMEM100 PF16311.5 gi|124027968|ref|YP_001013288.1| - 0.11 12.1 0.7 0.37 10.4 0.1 2.3 2 0 0 2 2 2 0 Transmembrane protein 100 NucS PF01939.16 gi|124027969|ref|YP_001013289.1| - 1.6e-62 210.9 0.5 2.1e-62 210.5 0.5 1.0 1 0 0 1 1 1 1 Endonuclease NucS PDDEXK_9 PF08011.11 gi|124027969|ref|YP_001013289.1| - 0.00043 20.1 0.0 0.00071 19.4 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.6 gi|124027969|ref|YP_001013289.1| - 0.0033 17.4 0.0 0.0065 16.5 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0102 PF02021.17 gi|124027969|ref|YP_001013289.1| - 0.0069 16.6 0.1 0.018 15.2 0.1 1.8 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HSDR_N PF04313.14 gi|124027969|ref|YP_001013289.1| - 0.057 13.4 0.2 0.14 12.1 0.1 1.5 1 1 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) ScsC_N PF18312.1 gi|124027969|ref|YP_001013289.1| - 0.067 13.0 0.3 0.067 13.0 0.3 2.0 2 0 0 2 2 2 0 Copper resistance protein ScsC N-terminal domain AHJR-like PF18743.1 gi|124027969|ref|YP_001013289.1| - 0.12 12.0 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 REase_AHJR-like YhcG_C PF06250.11 gi|124027969|ref|YP_001013289.1| - 0.13 12.0 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain DNA_primase_lrg PF04104.14 gi|124027970|ref|YP_001013290.1| - 3.6e-31 108.5 0.0 4.7e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit SSV1_ORF_D-335 PF07935.11 gi|124027970|ref|YP_001013290.1| - 0.095 13.0 0.8 1.8 8.9 0.2 2.3 2 0 0 2 2 2 0 ORF D-335-like protein DUF3510 PF12022.8 gi|124027970|ref|YP_001013290.1| - 0.18 12.2 0.0 0.38 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3510) HTH_AsnC-type PF13404.6 gi|124027971|ref|YP_001013291.1| - 8.4e-08 31.9 0.6 1.2e-07 31.4 0.6 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|124027971|ref|YP_001013291.1| - 1.7e-06 27.4 0.0 2.4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.9 gi|124027971|ref|YP_001013291.1| - 2.4e-06 27.6 0.1 2.7e-06 27.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.6 gi|124027971|ref|YP_001013291.1| - 6.8e-06 26.0 0.0 7.5e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|124027971|ref|YP_001013291.1| - 2.6e-05 24.2 0.2 3.3e-05 23.9 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DprA_WH PF17782.1 gi|124027971|ref|YP_001013291.1| - 6.6e-05 23.0 0.3 7.7e-05 22.7 0.3 1.1 1 0 0 1 1 1 1 DprA winged helix domain Mrr_N PF14338.6 gi|124027971|ref|YP_001013291.1| - 8.7e-05 22.6 0.1 0.0078 16.3 0.1 2.0 1 1 1 2 2 2 1 Mrr N-terminal domain TrmB PF01978.19 gi|124027971|ref|YP_001013291.1| - 0.00019 21.2 0.1 0.00024 20.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|124027971|ref|YP_001013291.1| - 0.00078 19.2 0.1 0.00083 19.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|124027971|ref|YP_001013291.1| - 0.00081 19.2 0.2 0.0011 18.9 0.2 1.2 1 0 0 1 1 1 1 MarR family DUF1889 PF08986.10 gi|124027971|ref|YP_001013291.1| - 0.0012 19.2 0.0 0.0012 19.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1889) HTH_5 PF01022.20 gi|124027971|ref|YP_001013291.1| - 0.0013 18.5 0.0 0.0024 17.7 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF505 PF04458.12 gi|124027971|ref|YP_001013291.1| - 0.002 16.6 0.1 0.0023 16.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_27 PF13463.6 gi|124027971|ref|YP_001013291.1| - 0.0031 18.0 0.1 0.004 17.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain FaeA PF04703.12 gi|124027971|ref|YP_001013291.1| - 0.0042 17.4 0.0 0.0053 17.1 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HrcA_DNA-bdg PF03444.15 gi|124027971|ref|YP_001013291.1| - 0.007 16.0 0.0 0.0088 15.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_IclR PF09339.10 gi|124027971|ref|YP_001013291.1| - 0.0072 16.1 0.1 0.013 15.3 0.1 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_47 PF16221.5 gi|124027971|ref|YP_001013291.1| - 0.01 15.4 0.1 0.017 14.7 0.1 1.5 2 0 0 2 2 2 0 winged helix-turn-helix AbiEi_4 PF13338.6 gi|124027971|ref|YP_001013291.1| - 0.016 15.3 0.3 0.022 14.9 0.3 1.3 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin DUF2161 PF09929.9 gi|124027971|ref|YP_001013291.1| - 0.023 14.8 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 Putative PD-(D/E)XK phosphodiesterase (DUF2161) MarR PF01047.22 gi|124027971|ref|YP_001013291.1| - 0.028 14.3 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|124027971|ref|YP_001013291.1| - 0.045 14.1 0.1 0.057 13.8 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator Dimerisation2 PF16864.5 gi|124027971|ref|YP_001013291.1| - 0.051 13.6 0.0 0.057 13.4 0.0 1.1 1 0 0 1 1 1 0 Dimerisation domain HemN_C PF06969.16 gi|124027971|ref|YP_001013291.1| - 0.059 13.4 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 HemN C-terminal domain DUF1495 PF07381.11 gi|124027971|ref|YP_001013291.1| - 0.086 12.7 0.0 0.25 11.2 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Ribosomal_S25 PF03297.15 gi|124027972|ref|YP_001013292.1| - 2.3e-15 56.6 0.1 2.4e-15 56.5 0.1 1.0 1 0 0 1 1 1 1 S25 ribosomal protein GntR PF00392.21 gi|124027972|ref|YP_001013292.1| - 0.0027 17.3 0.2 0.0049 16.5 0.2 1.5 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|124027972|ref|YP_001013292.1| - 0.0061 16.7 0.1 0.0071 16.5 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|124027972|ref|YP_001013292.1| - 0.0067 16.0 0.2 0.011 15.3 0.1 1.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|124027972|ref|YP_001013292.1| - 0.014 15.7 0.0 0.019 15.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator EAP30 PF04157.16 gi|124027972|ref|YP_001013292.1| - 0.015 14.6 0.0 0.016 14.5 0.0 1.0 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_28 PF13518.6 gi|124027972|ref|YP_001013292.1| - 0.017 15.2 0.0 0.033 14.3 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|124027972|ref|YP_001013292.1| - 0.018 15.0 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 HTH domain MarR PF01047.22 gi|124027972|ref|YP_001013292.1| - 0.034 14.1 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 MarR family Mor PF08765.11 gi|124027972|ref|YP_001013292.1| - 0.035 14.1 0.2 0.056 13.4 0.2 1.4 1 1 0 1 1 1 0 Mor transcription activator family HTH_Crp_2 PF13545.6 gi|124027972|ref|YP_001013292.1| - 0.13 12.2 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|124027972|ref|YP_001013292.1| - 0.14 12.1 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 MarR family FbpA PF05833.11 gi|124027973|ref|YP_001013293.1| - 4.3e-45 154.3 0.0 5.6e-45 153.9 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|124027973|ref|YP_001013293.1| - 9.7e-25 87.3 0.0 1.7e-24 86.6 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|124027973|ref|YP_001013293.1| - 8.5e-05 22.7 0.0 0.00023 21.3 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain PEP-utilisers_N PF05524.13 gi|124027973|ref|YP_001013293.1| - 0.0015 18.7 3.6 0.3 11.2 1.8 2.6 2 0 0 2 2 2 1 PEP-utilising enzyme, N-terminal DUF2336 PF10098.9 gi|124027973|ref|YP_001013293.1| - 0.0058 16.1 0.0 0.0058 16.1 0.0 2.2 3 0 0 3 3 3 1 Uncharacterised protein conserved in bacteria (DUF2336) THOC7 PF05615.13 gi|124027973|ref|YP_001013293.1| - 0.019 15.2 8.1 0.66 10.3 1.7 2.6 2 0 0 2 2 2 0 Tho complex subunit 7 GAS PF13851.6 gi|124027973|ref|YP_001013293.1| - 0.023 14.1 4.4 0.092 12.1 0.3 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding COG2 PF06148.11 gi|124027973|ref|YP_001013293.1| - 0.034 14.2 0.8 5.9 7.0 0.2 2.4 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 FlaC_arch PF05377.11 gi|124027973|ref|YP_001013293.1| - 0.04 14.3 3.0 0.89 10.0 0.4 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) SKA2 PF16740.5 gi|124027973|ref|YP_001013293.1| - 0.043 13.6 2.2 1.5 8.6 0.2 2.6 3 0 0 3 3 2 0 Spindle and kinetochore-associated protein 2 KxDL PF10241.9 gi|124027973|ref|YP_001013293.1| - 0.08 13.2 0.9 8.3 6.8 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein Phage_GP20 PF06810.11 gi|124027973|ref|YP_001013293.1| - 0.11 12.2 0.9 0.32 10.8 0.3 1.9 2 0 0 2 2 2 0 Phage minor structural protein GP20 Prefoldin_2 PF01920.20 gi|124027973|ref|YP_001013293.1| - 0.16 11.9 6.9 0.6 10.1 0.3 2.5 2 0 0 2 2 2 0 Prefoldin subunit DUF3450 PF11932.8 gi|124027973|ref|YP_001013293.1| - 0.21 10.9 2.4 0.51 9.6 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Laminin_II PF06009.12 gi|124027973|ref|YP_001013293.1| - 0.26 11.3 3.3 1.2 9.2 1.1 2.2 2 0 0 2 2 2 0 Laminin Domain II BLOC1_2 PF10046.9 gi|124027973|ref|YP_001013293.1| - 0.35 11.2 2.2 16 5.9 0.1 2.4 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|124027973|ref|YP_001013293.1| - 0.44 10.6 1.8 23 5.0 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) PspA_IM30 PF04012.12 gi|124027973|ref|YP_001013293.1| - 0.86 9.1 9.9 0.76 9.3 2.2 2.4 2 0 0 2 2 2 0 PspA/IM30 family APG6_N PF17675.1 gi|124027973|ref|YP_001013293.1| - 0.96 10.0 7.2 1.4 9.4 1.5 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region Tropomyosin_1 PF12718.7 gi|124027973|ref|YP_001013293.1| - 1.1 9.5 7.2 1.4 9.0 0.7 2.2 2 0 0 2 2 2 0 Tropomyosin like DUF2570 PF10828.8 gi|124027973|ref|YP_001013293.1| - 1.1 9.1 3.5 0.76 9.6 0.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) TMF_DNA_bd PF12329.8 gi|124027973|ref|YP_001013293.1| - 1.1 9.2 6.2 3.8 7.6 0.2 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Med4 PF10018.9 gi|124027973|ref|YP_001013293.1| - 1.3 8.7 3.8 0.51 10.0 0.1 1.9 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Spc7 PF08317.11 gi|124027973|ref|YP_001013293.1| - 7.1 5.4 6.4 6.7 5.5 1.1 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein Rab5ip PF07019.12 gi|124027974|ref|YP_001013294.1| - 0.015 15.9 1.5 0.023 15.3 1.5 1.2 1 0 0 1 1 1 0 Rab5-interacting protein (Rab5ip) ACT_7 PF13840.6 gi|124027974|ref|YP_001013294.1| - 0.078 12.8 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 ACT domain Phage_holin_3_6 PF07332.11 gi|124027974|ref|YP_001013294.1| - 3.1 7.9 8.8 7.1 6.7 8.8 1.6 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III RNA_Me_trans PF04252.13 gi|124027975|ref|YP_001013295.1| - 9.2e-47 159.2 0.0 1.1e-46 159.0 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Lactamase_B_3 PF13483.6 gi|124027976|ref|YP_001013296.1| - 3.8e-05 23.6 0.0 7.9e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|124027976|ref|YP_001013296.1| - 0.00016 21.7 1.0 0.00045 20.3 0.3 2.1 3 0 0 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|124027976|ref|YP_001013296.1| - 0.00036 20.1 0.1 0.00051 19.6 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Imm40 PF15569.6 gi|124027976|ref|YP_001013296.1| - 0.095 12.8 0.3 0.17 12.0 0.3 1.4 1 0 0 1 1 1 0 Immunity protein 40 DUF4390 PF14334.6 gi|124027976|ref|YP_001013296.1| - 0.13 11.7 0.1 0.21 11.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4390) DUF166 PF02593.14 gi|124027976|ref|YP_001013296.1| - 0.15 11.6 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function tRNA-synt_1g PF09334.11 gi|124027978|ref|YP_001013298.1| - 2.2e-158 527.1 0.0 2.6e-158 526.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|124027978|ref|YP_001013298.1| - 5e-15 54.8 0.0 5.3e-08 31.6 0.0 3.4 2 2 1 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|124027978|ref|YP_001013298.1| - 9.5e-10 38.6 0.0 2.2e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|124027978|ref|YP_001013298.1| - 9.5e-05 21.9 0.0 0.0065 15.9 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain TerY_C PF15616.6 gi|124027978|ref|YP_001013298.1| - 0.027 14.6 0.7 0.049 13.7 0.7 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain tRNA-synt_1f PF01921.18 gi|124027978|ref|YP_001013298.1| - 0.086 11.7 0.0 3.7 6.4 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) zf-Di19 PF05605.12 gi|124027978|ref|YP_001013298.1| - 0.15 12.4 1.3 0.32 11.3 1.3 1.5 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.7 gi|124027978|ref|YP_001013298.1| - 0.69 10.0 4.4 1.5 8.9 4.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|124027978|ref|YP_001013298.1| - 1.5 8.7 4.1 3 7.8 0.9 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|124027978|ref|YP_001013298.1| - 4.9 7.0 6.9 6.3 6.7 0.3 2.8 2 1 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|124027978|ref|YP_001013298.1| - 9.7 5.8 9.7 19 4.8 1.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain PfkB PF00294.24 gi|124027979|ref|YP_001013299.1| - 2.6e-38 132.1 1.1 3.5e-38 131.6 1.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|124027979|ref|YP_001013299.1| - 0.14 11.5 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase CxxCxxCC PF03692.15 gi|124027980|ref|YP_001013300.1| - 2.1e-16 60.4 0.2 3.2e-16 59.8 0.2 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Nab2p_Zf1 PF18260.1 gi|124027980|ref|YP_001013300.1| - 0.22 11.5 3.5 0.44 10.5 0.2 2.7 2 1 1 3 3 3 0 Nuclear polyadenylated RNA-binding 2 protein CCCH zinc finger 1 DUF2208 PF09973.9 gi|124027981|ref|YP_001013301.1| - 1.1e-68 231.3 4.5 1.3e-68 231.1 4.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Sensor PF13796.6 gi|124027981|ref|YP_001013301.1| - 0.0086 16.1 0.5 3.3 7.7 0.0 2.2 1 1 1 2 2 2 2 Putative sensor Cpta_toxin PF07254.12 gi|124027981|ref|YP_001013301.1| - 0.12 12.4 0.2 0.27 11.2 0.2 1.6 1 0 0 1 1 1 0 Membrane-bound toxin component of toxin-antitoxin system Ac81 PF05820.11 gi|124027981|ref|YP_001013301.1| - 0.15 11.6 4.9 4.7 6.7 0.0 2.2 2 0 0 2 2 2 0 Baculoviridae AC81 YqzM PF14141.6 gi|124027981|ref|YP_001013301.1| - 0.29 11.2 0.3 0.29 11.2 0.3 2.2 2 0 0 2 2 2 0 YqzM-like protein Phage_holin_3_6 PF07332.11 gi|124027981|ref|YP_001013301.1| - 7.4 6.6 10.3 0.25 11.4 0.8 2.5 2 1 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Radical_SAM PF04055.21 gi|124027982|ref|YP_001013302.1| - 7.3e-18 65.5 0.0 1.8e-17 64.3 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|124027982|ref|YP_001013302.1| - 2.7e-17 62.9 0.0 5.6e-17 61.9 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation HAD PF12710.7 gi|124027982|ref|YP_001013302.1| - 0.085 13.3 0.0 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DNA_binding_1 PF01035.20 gi|124027983|ref|YP_001013303.1| - 8.5e-22 77.1 0.0 3.2e-21 75.2 0.0 1.7 2 0 0 2 2 2 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Lactamase_B_2 PF12706.7 gi|124027984|ref|YP_001013304.1| - 3.6e-08 33.2 0.0 7.6e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|124027984|ref|YP_001013304.1| - 0.0039 17.1 0.0 0.0084 16.0 0.0 1.5 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Glu-tRNAGln PF02686.15 gi|124027985|ref|YP_001013305.1| - 1.9e-13 50.5 0.1 2.6e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit DUF2250 PF10007.9 gi|124027985|ref|YP_001013305.1| - 0.056 13.6 0.1 0.065 13.4 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) BtpA PF03437.15 gi|124027986|ref|YP_001013306.1| - 6.8e-75 251.8 0.0 7.7e-75 251.6 0.0 1.0 1 0 0 1 1 1 1 BtpA family Fim-adh_lectin PF09222.10 gi|124027986|ref|YP_001013306.1| - 0.15 11.6 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 Fimbrial adhesin F17-AG, lectin domain Thioredoxin PF00085.20 gi|124027987|ref|YP_001013307.1| - 5.3e-23 81.0 0.0 6.6e-23 80.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|124027987|ref|YP_001013307.1| - 3.1e-09 36.6 0.0 3.5e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_8 PF13905.6 gi|124027987|ref|YP_001013307.1| - 2.5e-07 30.9 0.1 1.6e-05 25.1 0.0 2.5 1 1 2 3 3 3 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|124027987|ref|YP_001013307.1| - 1.5e-05 24.8 0.0 2.1e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|124027987|ref|YP_001013307.1| - 1.9e-05 25.1 0.2 5.9e-05 23.5 0.2 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain DIM1 PF02966.16 gi|124027987|ref|YP_001013307.1| - 0.0011 18.7 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 Mitosis protein DIM1 Redoxin PF08534.10 gi|124027987|ref|YP_001013307.1| - 0.015 15.0 0.3 0.034 13.8 0.1 1.6 1 1 0 1 1 1 0 Redoxin AhpC-TSA PF00578.21 gi|124027987|ref|YP_001013307.1| - 0.022 14.7 0.0 0.03 14.2 0.0 1.3 1 1 0 1 1 1 0 AhpC/TSA family HyaE PF07449.11 gi|124027987|ref|YP_001013307.1| - 0.026 14.5 0.0 0.04 13.9 0.0 1.5 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.6 gi|124027987|ref|YP_001013307.1| - 0.072 13.3 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like UPF0047 PF01894.17 gi|124027988|ref|YP_001013308.1| - 1.7e-35 121.6 0.0 2.1e-35 121.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 QRPTase_C PF01729.19 gi|124027989|ref|YP_001013309.1| - 1.7e-28 99.5 0.0 2.3e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|124027989|ref|YP_001013309.1| - 3e-06 27.6 0.0 6.1e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|124027989|ref|YP_001013309.1| - 5.2e-06 26.4 0.0 1.2e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|124027989|ref|YP_001013309.1| - 0.00017 22.0 0.0 0.083 13.3 0.0 2.3 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Cren7 PF11520.8 gi|124027992|ref|YP_001013312.1| - 6.4e-35 118.9 2.4 7e-35 118.7 2.4 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 TrmB PF01978.19 gi|124027993|ref|YP_001013313.1| - 8.4e-06 25.6 0.0 0.0043 16.9 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|124027993|ref|YP_001013313.1| - 0.00041 20.3 0.0 0.1 12.6 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|124027993|ref|YP_001013313.1| - 0.00041 19.9 0.2 0.47 10.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|124027993|ref|YP_001013313.1| - 0.00099 19.3 0.0 1.9 8.7 0.0 2.3 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|124027993|ref|YP_001013313.1| - 0.0024 17.8 0.1 0.12 12.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|124027993|ref|YP_001013313.1| - 0.0046 16.9 0.0 0.86 9.6 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|124027993|ref|YP_001013313.1| - 0.021 14.6 0.0 0.39 10.6 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_10 PF04967.12 gi|124027993|ref|YP_001013313.1| - 0.03 14.1 0.0 5.8 6.8 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain MarR_2 PF12802.7 gi|124027993|ref|YP_001013313.1| - 0.044 13.7 0.1 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.20 gi|124027993|ref|YP_001013313.1| - 0.083 13.2 0.0 1.3 9.4 0.0 2.5 3 0 0 3 3 3 0 Transcriptional regulator Phage_terminase PF10668.9 gi|124027993|ref|YP_001013313.1| - 0.12 12.4 0.0 21 5.2 0.0 2.9 3 0 0 3 3 3 0 Phage terminase small subunit HTH_17 PF12728.7 gi|124027993|ref|YP_001013313.1| - 0.13 12.5 1.1 4.7 7.5 0.1 3.0 3 1 0 3 3 3 0 Helix-turn-helix domain MerR PF00376.23 gi|124027993|ref|YP_001013313.1| - 0.14 11.9 0.1 28 4.6 0.0 2.7 2 0 0 2 2 2 0 MerR family regulatory protein HTH_20 PF12840.7 gi|124027993|ref|YP_001013313.1| - 0.15 12.2 0.2 2.5 8.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain IF2_N PF04760.15 gi|124027993|ref|YP_001013313.1| - 0.16 11.9 0.1 2 8.3 0.0 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF1582 PF07621.11 gi|124027993|ref|YP_001013313.1| - 0.52 10.3 2.7 8.6 6.4 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1582) AdoHcyase PF05221.17 gi|124027994|ref|YP_001013314.1| - 3.9e-69 233.1 0.0 2.7e-35 122.0 0.1 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|124027994|ref|YP_001013314.1| - 2.2e-59 200.2 0.2 3.6e-59 199.5 0.2 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|124027994|ref|YP_001013314.1| - 4.1e-10 39.3 0.5 7.6e-10 38.4 0.5 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|124027994|ref|YP_001013314.1| - 8.5e-09 35.2 0.1 1.6e-08 34.3 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain THF_DHG_CYH_C PF02882.19 gi|124027994|ref|YP_001013314.1| - 0.0061 15.9 0.6 0.044 13.1 0.6 2.1 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AlaDh_PNT_C PF01262.21 gi|124027994|ref|YP_001013314.1| - 0.01 15.2 2.8 0.083 12.2 2.8 2.2 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain YdfZ PF14001.6 gi|124027994|ref|YP_001013314.1| - 0.15 12.5 0.3 0.57 10.6 0.1 2.1 2 0 0 2 2 2 0 YdfZ protein Sec34 PF04136.15 gi|124027995|ref|YP_001013315.1| - 0.00047 20.1 0.3 0.00084 19.2 0.3 1.5 1 0 0 1 1 1 1 Sec34-like family DUF3450 PF11932.8 gi|124027995|ref|YP_001013315.1| - 0.0013 18.1 3.8 0.0021 17.4 3.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Matrilin_ccoil PF10393.9 gi|124027995|ref|YP_001013315.1| - 0.0046 16.8 0.3 0.0046 16.8 0.3 2.5 2 1 1 3 3 2 1 Trimeric coiled-coil oligomerisation domain of matrilin Baculo_PEP_C PF04513.12 gi|124027995|ref|YP_001013315.1| - 0.0056 16.7 0.4 0.013 15.5 0.4 1.6 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus YabA PF06156.13 gi|124027995|ref|YP_001013315.1| - 0.0068 17.0 1.2 0.016 15.8 1.2 1.6 1 0 0 1 1 1 1 Initiation control protein YabA Prefoldin_2 PF01920.20 gi|124027995|ref|YP_001013315.1| - 0.0081 16.1 1.1 0.0081 16.1 1.1 2.1 2 1 1 3 3 2 1 Prefoldin subunit FHIPEP PF00771.20 gi|124027995|ref|YP_001013315.1| - 0.0095 14.5 3.6 0.01 14.3 3.6 1.1 1 0 0 1 1 1 1 FHIPEP family V_ATPase_I PF01496.19 gi|124027995|ref|YP_001013315.1| - 0.01 13.8 0.9 0.011 13.6 0.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FPP PF05911.11 gi|124027995|ref|YP_001013315.1| - 0.011 13.9 2.0 0.013 13.7 2.0 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil Exonuc_VII_L PF02601.15 gi|124027995|ref|YP_001013315.1| - 0.014 15.0 1.1 0.015 14.8 1.1 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit CENP-H PF05837.12 gi|124027995|ref|YP_001013315.1| - 0.031 14.7 8.2 0.15 12.5 8.2 2.1 1 1 0 1 1 1 0 Centromere protein H (CENP-H) IFT57 PF10498.9 gi|124027995|ref|YP_001013315.1| - 0.034 13.1 2.7 0.046 12.7 2.7 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF3153 PF11353.8 gi|124027995|ref|YP_001013315.1| - 0.04 13.5 0.8 0.067 12.8 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) CorA PF01544.18 gi|124027995|ref|YP_001013315.1| - 0.048 13.0 3.6 0.073 12.4 3.6 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein PG_binding_2 PF08823.11 gi|124027995|ref|YP_001013315.1| - 0.051 13.9 1.3 2.1 8.7 0.0 3.3 3 0 0 3 3 3 0 Putative peptidoglycan binding domain XhlA PF10779.9 gi|124027995|ref|YP_001013315.1| - 0.062 13.5 0.7 0.19 12.0 0.6 1.9 1 1 0 1 1 1 0 Haemolysin XhlA DUF1664 PF07889.12 gi|124027995|ref|YP_001013315.1| - 0.064 13.3 2.1 0.14 12.2 2.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) FapA PF03961.13 gi|124027995|ref|YP_001013315.1| - 0.086 11.4 0.5 0.11 11.1 0.5 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Jnk-SapK_ap_N PF09744.9 gi|124027995|ref|YP_001013315.1| - 0.099 12.9 11.2 0.061 13.5 7.2 2.5 3 1 0 3 3 3 0 JNK_SAPK-associated protein-1 DHR10 PF18595.1 gi|124027995|ref|YP_001013315.1| - 0.1 12.7 13.3 0.17 12.0 11.5 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Aminotran_3 PF00202.21 gi|124027995|ref|YP_001013315.1| - 0.11 11.1 1.0 0.69 8.5 1.0 2.1 1 1 0 1 1 1 0 Aminotransferase class-III Tweety PF04906.13 gi|124027995|ref|YP_001013315.1| - 0.11 11.1 1.3 0.15 10.7 1.3 1.2 1 0 0 1 1 1 0 Tweety PsbP PF01789.16 gi|124027995|ref|YP_001013315.1| - 0.12 12.6 0.2 0.19 11.8 0.2 1.4 1 0 0 1 1 1 0 PsbP FUSC PF04632.12 gi|124027995|ref|YP_001013315.1| - 0.12 10.8 2.9 0.15 10.5 2.9 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family FlaC_arch PF05377.11 gi|124027995|ref|YP_001013315.1| - 0.2 12.1 3.8 0.6 10.5 1.5 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) COG2 PF06148.11 gi|124027995|ref|YP_001013315.1| - 0.23 11.6 6.5 1.1 9.4 6.3 2.2 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2203 PF09969.9 gi|124027995|ref|YP_001013315.1| - 0.32 11.7 6.0 0.81 10.4 0.4 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF4795 PF16043.5 gi|124027995|ref|YP_001013315.1| - 0.36 10.4 5.7 0.16 11.5 1.8 1.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4795) Prominin PF05478.11 gi|124027995|ref|YP_001013315.1| - 0.37 8.7 1.3 0.47 8.3 1.3 1.1 1 0 0 1 1 1 0 Prominin Uso1_p115_C PF04871.13 gi|124027995|ref|YP_001013315.1| - 0.58 10.5 4.2 1.5 9.2 3.9 1.8 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Atg14 PF10186.9 gi|124027995|ref|YP_001013315.1| - 0.68 9.0 4.6 0.93 8.5 4.6 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 WD40_alt PF14077.6 gi|124027995|ref|YP_001013315.1| - 0.83 9.6 3.5 0.57 10.1 0.6 2.3 2 0 0 2 2 2 0 Alternative WD40 repeat motif DUF2721 PF11026.8 gi|124027995|ref|YP_001013315.1| - 1.1 9.2 6.9 1.4 8.8 5.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) DUF3323 PF11796.8 gi|124027995|ref|YP_001013315.1| - 1.5 8.6 10.5 1.4 8.8 8.1 2.0 1 1 1 2 2 2 0 Protein of unknown function N-terminus (DUF3323) ZapB PF06005.12 gi|124027995|ref|YP_001013315.1| - 1.9 9.0 13.2 11 6.5 13.0 2.5 1 1 0 1 1 1 0 Cell division protein ZapB DivIC PF04977.15 gi|124027995|ref|YP_001013315.1| - 2.1 8.2 10.1 12 5.8 2.3 3.6 2 1 1 3 3 3 0 Septum formation initiator DUF2312 PF10073.9 gi|124027995|ref|YP_001013315.1| - 3.2 7.5 9.3 0.097 12.3 1.2 2.7 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) APG6_N PF17675.1 gi|124027995|ref|YP_001013315.1| - 3.2 8.3 9.4 0.2 12.2 4.3 1.7 2 0 0 2 2 1 0 Apg6 coiled-coil region DUF2122 PF09895.9 gi|124027996|ref|YP_001013316.1| - 7.5e-31 106.7 0.0 8.4e-31 106.5 0.0 1.0 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) DNA_methylase PF00145.17 gi|124027997|ref|YP_001013317.1| - 2.6e-49 168.4 0.0 4.5e-33 115.0 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|124027997|ref|YP_001013317.1| - 0.0047 16.5 0.0 0.0082 15.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|124027997|ref|YP_001013317.1| - 0.15 12.8 0.0 0.93 10.2 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain TFIIE_alpha PF02002.17 gi|124027998|ref|YP_001013318.1| - 3.1e-18 65.5 0.7 5.4e-18 64.8 0.7 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.21 gi|124027998|ref|YP_001013318.1| - 5.4e-07 29.2 0.2 1.4e-06 27.9 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|124027998|ref|YP_001013318.1| - 1.6e-05 24.6 0.4 2.6e-05 23.9 0.0 1.5 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|124027998|ref|YP_001013318.1| - 7.3e-05 22.3 0.2 0.00028 20.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TF_Zn_Ribbon PF08271.12 gi|124027998|ref|YP_001013318.1| - 0.00078 18.9 0.4 0.0014 18.1 0.4 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_20 PF12840.7 gi|124027998|ref|YP_001013318.1| - 0.0013 18.8 0.0 0.0038 17.2 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|124027998|ref|YP_001013318.1| - 0.0015 18.4 0.1 0.0033 17.3 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|124027998|ref|YP_001013318.1| - 0.0015 18.4 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_9 PF08221.11 gi|124027998|ref|YP_001013318.1| - 0.015 15.4 0.1 0.03 14.4 0.0 1.6 2 0 0 2 2 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain z-alpha PF02295.17 gi|124027998|ref|YP_001013318.1| - 0.016 15.3 0.1 0.031 14.3 0.1 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_Crp_2 PF13545.6 gi|124027998|ref|YP_001013318.1| - 0.017 15.1 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|124027998|ref|YP_001013318.1| - 0.019 15.3 0.0 0.037 14.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.6 gi|124027998|ref|YP_001013318.1| - 0.022 14.7 0.1 0.057 13.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HypA PF01155.19 gi|124027998|ref|YP_001013318.1| - 0.048 13.7 0.0 0.072 13.1 0.0 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_45 PF14947.6 gi|124027998|ref|YP_001013318.1| - 0.065 13.2 0.2 4.7 7.3 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix TackOD1 PF18551.1 gi|124027998|ref|YP_001013318.1| - 0.066 12.9 0.3 0.33 10.6 0.0 1.9 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 HTH_29 PF13551.6 gi|124027998|ref|YP_001013318.1| - 0.074 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix zf-ACC PF17848.1 gi|124027998|ref|YP_001013318.1| - 0.081 13.0 0.6 6.1 7.0 0.1 2.6 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain MarR PF01047.22 gi|124027998|ref|YP_001013318.1| - 0.082 12.8 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 MarR family Mu-like_Com PF10122.9 gi|124027998|ref|YP_001013318.1| - 0.09 12.2 0.3 0.65 9.5 0.1 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF4217 PF13959.6 gi|124027998|ref|YP_001013318.1| - 0.11 12.7 0.2 0.48 10.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4217) DUF4674 PF15719.5 gi|124027998|ref|YP_001013318.1| - 0.12 12.4 0.1 2.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4674) zf-FPG_IleRS PF06827.14 gi|124027998|ref|YP_001013318.1| - 0.14 12.0 0.7 3.2 7.7 0.1 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf_UBZ PF18439.1 gi|124027998|ref|YP_001013318.1| - 0.15 11.7 0.7 0.49 10.0 0.2 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-NADH-PPase PF09297.11 gi|124027998|ref|YP_001013318.1| - 0.16 11.7 0.4 0.5 10.1 0.5 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Trm56 PF01994.16 gi|124027999|ref|YP_001013319.1| - 1.5e-49 166.9 0.0 1.9e-49 166.5 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 baeRF_family3 PF18845.1 gi|124027999|ref|YP_001013319.1| - 0.19 12.0 0.0 0.29 11.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 3 MMR_HSR1 PF01926.23 gi|124028000|ref|YP_001013320.1| - 1.7e-18 66.7 0.0 4.1e-18 65.5 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|124028000|ref|YP_001013320.1| - 9.2e-17 61.4 2.4 1.7e-16 60.6 2.4 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|124028000|ref|YP_001013320.1| - 1e-13 51.8 0.0 3.2e-13 50.2 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.18 gi|124028000|ref|YP_001013320.1| - 9.1e-10 38.3 0.0 1.9e-09 37.3 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|124028000|ref|YP_001013320.1| - 3.3e-05 23.5 0.1 0.00059 19.4 0.1 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|124028000|ref|YP_001013320.1| - 6.1e-05 22.5 0.1 0.00084 18.8 0.0 2.6 1 1 1 2 2 2 1 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|124028000|ref|YP_001013320.1| - 0.00012 22.1 0.1 0.0032 17.6 0.0 2.3 1 1 1 2 2 2 1 Dynamin family cobW PF02492.19 gi|124028000|ref|YP_001013320.1| - 0.00014 21.5 3.9 0.0022 17.6 0.1 2.6 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|124028000|ref|YP_001013320.1| - 0.00014 22.1 0.0 0.0019 18.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|124028000|ref|YP_001013320.1| - 0.0012 18.6 0.0 0.0033 17.2 0.0 1.7 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation NOG1 PF06858.14 gi|124028000|ref|YP_001013320.1| - 0.0024 17.6 0.0 0.0061 16.3 0.0 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1_Xtn PF16897.5 gi|124028000|ref|YP_001013320.1| - 0.0061 16.6 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|124028000|ref|YP_001013320.1| - 0.0069 16.3 0.0 1.6 8.6 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|124028000|ref|YP_001013320.1| - 0.0072 16.7 0.0 0.014 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|124028000|ref|YP_001013320.1| - 0.021 15.3 0.0 0.056 14.0 0.0 1.7 1 0 0 1 1 1 0 ABC transporter SRPRB PF09439.10 gi|124028000|ref|YP_001013320.1| - 0.037 13.4 0.0 0.078 12.4 0.0 1.4 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|124028000|ref|YP_001013320.1| - 0.039 14.2 0.0 4.9 7.4 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_23 PF13476.6 gi|124028000|ref|YP_001013320.1| - 0.089 13.3 0.1 1.1 9.7 0.2 2.1 1 1 1 2 2 2 0 AAA domain HTH_3 PF01381.22 gi|124028001|ref|YP_001013321.1| - 5.3e-12 45.6 0.7 1.1e-11 44.7 0.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|124028001|ref|YP_001013321.1| - 1.2e-10 41.6 2.5 1.2e-10 41.6 2.5 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|124028001|ref|YP_001013321.1| - 1.9e-08 34.2 0.2 4.8e-08 32.9 0.2 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|124028001|ref|YP_001013321.1| - 5.9e-06 26.0 0.3 1.4e-05 24.9 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|124028001|ref|YP_001013321.1| - 7.6e-05 22.8 2.8 0.00021 21.4 0.1 2.3 2 1 0 2 2 2 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA Pou PF00157.17 gi|124028001|ref|YP_001013321.1| - 0.04 13.9 0.1 0.086 12.8 0.1 1.6 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain Zn_ribbon_recom PF13408.6 gi|124028001|ref|YP_001013321.1| - 0.045 14.3 2.0 4.6 7.8 0.2 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain LIM PF00412.22 gi|124028001|ref|YP_001013321.1| - 0.077 13.2 0.2 0.13 12.6 0.2 1.3 1 0 0 1 1 1 0 LIM domain HTH_37 PF13744.6 gi|124028001|ref|YP_001013321.1| - 0.1 12.5 0.3 0.21 11.6 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Ribosomal_L40e PF01020.17 gi|124028001|ref|YP_001013321.1| - 0.11 12.3 0.6 0.32 10.9 0.3 1.8 2 0 0 2 2 2 0 Ribosomal L40e family LUC7 PF03194.15 gi|124028001|ref|YP_001013321.1| - 0.24 11.0 0.7 0.54 9.9 0.2 1.8 2 0 0 2 2 2 0 LUC7 N_terminus AAA PF00004.29 gi|124028002|ref|YP_001013322.1| - 1.7e-43 148.2 0.0 8.5e-43 145.9 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|124028002|ref|YP_001013322.1| - 6.2e-14 51.5 0.4 1.8e-13 50.1 0.4 1.8 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|124028002|ref|YP_001013322.1| - 1.8e-11 43.8 3.0 2.9e-10 39.9 1.6 2.5 2 0 0 2 2 2 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|124028002|ref|YP_001013322.1| - 1.4e-08 35.0 0.0 3.6e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Prot_ATP_OB_N PF17758.1 gi|124028002|ref|YP_001013322.1| - 1.1e-07 31.4 3.9 1.2e-06 28.0 2.0 2.9 2 0 0 2 2 2 1 Proteasomal ATPase OB N-terminal domain AAA_5 PF07728.14 gi|124028002|ref|YP_001013322.1| - 4.7e-07 29.9 0.1 2.6e-06 27.5 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|124028002|ref|YP_001013322.1| - 2.2e-06 28.1 0.4 0.0011 19.4 0.0 3.1 2 1 1 3 3 3 1 AAA ATPase domain RuvB_N PF05496.12 gi|124028002|ref|YP_001013322.1| - 2.9e-05 23.9 0.0 6.7e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain bZIP_1 PF00170.21 gi|124028002|ref|YP_001013322.1| - 3.6e-05 23.8 0.3 7.1e-05 22.8 0.3 1.5 1 0 0 1 1 1 1 bZIP transcription factor RNA_helicase PF00910.22 gi|124028002|ref|YP_001013322.1| - 9.8e-05 22.7 0.0 0.00056 20.3 0.0 2.2 3 0 0 3 3 1 1 RNA helicase DUF815 PF05673.13 gi|124028002|ref|YP_001013322.1| - 0.00011 21.5 0.0 0.00025 20.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|124028002|ref|YP_001013322.1| - 0.00038 20.7 2.1 0.009 16.3 0.3 2.8 2 1 0 2 2 1 1 AAA domain AAA_28 PF13521.6 gi|124028002|ref|YP_001013322.1| - 0.0018 18.5 0.8 0.0042 17.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|124028002|ref|YP_001013322.1| - 0.0019 17.6 0.0 0.0035 16.8 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|124028002|ref|YP_001013322.1| - 0.005 16.9 0.0 0.01 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|124028002|ref|YP_001013322.1| - 0.0054 17.3 0.0 0.014 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|124028002|ref|YP_001013322.1| - 0.0075 16.2 0.1 0.093 12.6 0.0 2.2 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|124028002|ref|YP_001013322.1| - 0.014 15.1 0.0 0.033 13.9 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|124028002|ref|YP_001013322.1| - 0.016 15.4 0.0 0.037 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|124028002|ref|YP_001013322.1| - 0.016 15.1 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|124028002|ref|YP_001013322.1| - 0.024 14.6 0.1 0.22 11.5 0.0 2.3 1 1 1 2 2 2 0 NACHT domain TIP49 PF06068.13 gi|124028002|ref|YP_001013322.1| - 0.032 13.4 0.0 0.053 12.7 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain Bac_DnaA PF00308.18 gi|124028002|ref|YP_001013322.1| - 0.032 14.1 0.0 0.094 12.5 0.0 1.7 2 0 0 2 2 1 0 Bacterial dnaA protein Zeta_toxin PF06414.12 gi|124028002|ref|YP_001013322.1| - 0.048 12.9 0.0 0.15 11.3 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin ABC_tran PF00005.27 gi|124028002|ref|YP_001013322.1| - 0.058 13.9 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 gi|124028002|ref|YP_001013322.1| - 0.071 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|124028002|ref|YP_001013322.1| - 0.079 12.5 0.0 0.19 11.3 0.0 1.5 2 0 0 2 2 1 0 P-loop containing dynein motor region ATPase PF06745.13 gi|124028002|ref|YP_001013322.1| - 0.082 12.2 0.5 0.36 10.2 0.0 2.3 3 0 0 3 3 3 0 KaiC Sigma54_activat PF00158.26 gi|124028002|ref|YP_001013322.1| - 0.11 12.2 0.1 0.88 9.2 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain TsaE PF02367.17 gi|124028002|ref|YP_001013322.1| - 0.11 12.5 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF3450 PF11932.8 gi|124028002|ref|YP_001013322.1| - 0.13 11.5 0.5 0.21 10.8 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) NTPase_1 PF03266.15 gi|124028002|ref|YP_001013322.1| - 0.14 12.1 0.5 2.9 7.8 0.1 3.0 3 1 1 4 4 4 0 NTPase AAA_25 PF13481.6 gi|124028002|ref|YP_001013322.1| - 0.14 11.7 0.2 0.43 10.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain Med21 PF11221.8 gi|124028002|ref|YP_001013322.1| - 0.15 12.3 1.5 0.3 11.3 1.5 1.5 1 0 0 1 1 1 0 Subunit 21 of Mediator complex NB-ARC PF00931.22 gi|124028002|ref|YP_001013322.1| - 0.17 11.0 0.0 0.42 9.7 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain V-SNARE PF05008.15 gi|124028002|ref|YP_001013322.1| - 0.2 12.1 2.0 0.42 11.0 2.0 1.4 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus Parvo_NS1 PF01057.17 gi|124028002|ref|YP_001013322.1| - 0.25 10.4 0.0 0.46 9.5 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 CxxCxxCC PF03692.15 gi|124028003|ref|YP_001013323.1| - 0.003 18.2 0.9 0.0055 17.4 0.9 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SprT-like PF10263.9 gi|124028004|ref|YP_001013324.1| - 0.15 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 SprT-like family PhoH PF02562.16 gi|124028005|ref|YP_001013325.1| - 9.3e-52 175.5 0.0 1.2e-51 175.1 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|124028005|ref|YP_001013325.1| - 6.5e-08 32.3 0.2 2.2e-06 27.4 0.3 2.4 1 1 1 2 2 2 1 KH domain KH_5 PF13184.6 gi|124028005|ref|YP_001013325.1| - 8.9e-05 22.5 0.1 0.029 14.4 0.0 2.5 2 0 0 2 2 2 2 NusA-like KH domain KH_1 PF00013.29 gi|124028005|ref|YP_001013325.1| - 0.00039 20.2 0.1 0.0013 18.5 0.0 1.9 2 0 0 2 2 2 1 KH domain ABC_tran PF00005.27 gi|124028005|ref|YP_001013325.1| - 0.029 14.9 0.0 0.06 13.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|124028005|ref|YP_001013325.1| - 0.031 14.0 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain MIF4G_like PF09088.11 gi|124028005|ref|YP_001013325.1| - 0.13 12.0 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 MIF4G like TYW3 PF02676.14 gi|124028006|ref|YP_001013326.1| - 2.4e-31 108.8 0.0 4e-31 108.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase TYW3 CBS PF00571.28 gi|124028007|ref|YP_001013327.1| - 2.8e-37 127.0 4.8 2.6e-19 69.4 0.1 2.2 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|124028007|ref|YP_001013327.1| - 0.011 15.9 0.2 5.7 7.3 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain DUF3659 PF12396.8 gi|124028007|ref|YP_001013327.1| - 0.012 15.5 1.6 0.3 11.0 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) DUF4314 PF14192.6 gi|124028007|ref|YP_001013327.1| - 0.11 12.4 0.6 0.67 9.9 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4314) CBS PF00571.28 gi|124028008|ref|YP_001013328.1| - 5.6e-37 126.0 14.2 9e-13 48.5 0.8 4.1 4 0 0 4 4 4 4 CBS domain GAF_2 PF13185.6 gi|124028008|ref|YP_001013328.1| - 0.0043 17.4 0.2 0.92 9.8 0.0 2.8 3 1 0 3 3 3 2 GAF domain GAF PF01590.26 gi|124028008|ref|YP_001013328.1| - 0.041 14.5 0.0 1.8 9.2 0.0 2.6 1 1 1 2 2 2 0 GAF domain H_kinase_N PF12282.8 gi|124028008|ref|YP_001013328.1| - 0.057 13.4 0.3 5.9 6.8 0.0 3.0 1 1 2 3 3 3 0 Signal transduction histidine kinase CBS PF00571.28 gi|124028009|ref|YP_001013329.1| - 3.8e-52 174.6 12.5 3.5e-15 56.2 0.2 4.5 3 1 2 5 5 5 4 CBS domain GAF PF01590.26 gi|124028009|ref|YP_001013329.1| - 0.0045 17.6 0.1 8.1 7.1 0.0 3.2 1 1 2 3 3 3 2 GAF domain DUF4835 PF16119.5 gi|124028009|ref|YP_001013329.1| - 0.029 13.5 0.0 0.04 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4835) TPP_enzyme_C PF02775.21 gi|124028009|ref|YP_001013329.1| - 0.043 13.6 0.1 0.088 12.6 0.1 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CBS PF00571.28 gi|124028010|ref|YP_001013330.1| - 3.8e-55 184.2 13.0 1.7e-20 73.2 0.6 4.1 4 0 0 4 4 4 4 CBS domain GAF PF01590.26 gi|124028010|ref|YP_001013330.1| - 0.00056 20.5 0.0 1 10.0 0.0 2.4 2 1 0 2 2 2 2 GAF domain DUF2786 PF10979.8 gi|124028010|ref|YP_001013330.1| - 0.0032 17.4 3.3 6.4 6.8 0.1 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF2786) Peptidase_S32 PF05579.13 gi|124028010|ref|YP_001013330.1| - 0.025 13.8 0.0 0.047 12.9 0.0 1.4 1 0 0 1 1 1 0 Equine arteritis virus serine endopeptidase S32 GAF_2 PF13185.6 gi|124028010|ref|YP_001013330.1| - 0.047 14.0 0.4 1.5 9.1 0.0 2.5 2 1 0 3 3 3 0 GAF domain IF3_N PF05198.16 gi|124028010|ref|YP_001013330.1| - 0.11 12.8 1.6 8.5 6.7 0.0 3.1 4 0 0 4 4 4 0 Translation initiation factor IF-3, N-terminal domain Peptidase_S29 PF02907.15 gi|124028010|ref|YP_001013330.1| - 0.16 11.7 0.0 0.51 10.1 0.0 1.8 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease Trypsin_2 PF13365.6 gi|124028010|ref|YP_001013330.1| - 0.18 12.7 0.1 0.42 11.5 0.1 1.8 1 1 0 1 1 1 0 Trypsin-like peptidase domain CBS PF00571.28 gi|124028011|ref|YP_001013331.1| - 2.5e-40 136.7 16.4 1.7e-11 44.4 0.1 4.2 4 0 0 4 4 4 4 CBS domain Mut7-C PF01927.16 gi|124028012|ref|YP_001013332.1| - 2.2e-48 164.1 0.0 2.6e-48 163.8 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|124028012|ref|YP_001013332.1| - 1.4e-05 24.7 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) Rad50_zn_hook PF04423.14 gi|124028012|ref|YP_001013332.1| - 0.036 13.9 0.2 0.079 12.8 0.2 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif Zn_ribbon_SprT PF17283.2 gi|124028012|ref|YP_001013332.1| - 0.039 13.9 1.1 2.4 8.1 0.0 2.5 2 0 0 2 2 2 0 SprT-like zinc ribbon domain PIN_9 PF18477.1 gi|124028012|ref|YP_001013332.1| - 0.048 14.0 0.0 0.068 13.5 0.0 1.3 1 0 0 1 1 1 0 PIN like domain PIN_10 PF18478.1 gi|124028012|ref|YP_001013332.1| - 0.09 13.0 0.0 0.2 11.9 0.0 1.6 1 1 0 1 1 1 0 PIN like domain DUF188 PF02639.14 gi|124028012|ref|YP_001013332.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 Rpr2 PF04032.16 gi|124028012|ref|YP_001013332.1| - 0.14 12.5 0.0 0.4 11.0 0.0 1.9 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Sulfatase PF00884.23 gi|124028012|ref|YP_001013332.1| - 0.19 11.1 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 Sulfatase SNARE_assoc PF09335.11 gi|124028013|ref|YP_001013333.1| - 2e-11 44.4 9.1 2e-11 44.4 9.1 2.1 2 1 0 2 2 2 1 SNARE associated Golgi protein Insulin_TMD PF17870.1 gi|124028013|ref|YP_001013333.1| - 2.1 8.5 9.9 5.8 7.1 3.3 3.2 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment Helicase_RecD PF05127.14 gi|124028015|ref|YP_001013335.1| - 1e-38 133.0 0.0 2e-38 132.0 0.0 1.5 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|124028015|ref|YP_001013335.1| - 1e-29 103.5 1.2 2.5e-19 69.6 1.7 3.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|124028015|ref|YP_001013335.1| - 3.3e-08 33.3 0.0 7.3e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|124028015|ref|YP_001013335.1| - 4.2e-06 27.0 0.1 1.3e-05 25.4 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|124028015|ref|YP_001013335.1| - 0.0011 19.3 0.0 0.0031 17.9 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_16 PF13191.6 gi|124028015|ref|YP_001013335.1| - 0.0019 18.6 0.3 0.0076 16.7 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|124028015|ref|YP_001013335.1| - 0.0034 17.1 0.1 0.0097 15.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain Acetyltransf_10 PF13673.7 gi|124028015|ref|YP_001013335.1| - 0.0057 16.6 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Peptidase_M42 PF05343.14 gi|124028016|ref|YP_001013336.1| - 2.1e-103 345.3 0.1 2.5e-103 345.1 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|124028016|ref|YP_001013336.1| - 2.3e-10 40.5 0.2 3.5e-10 39.9 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|124028016|ref|YP_001013336.1| - 0.003 17.3 0.1 0.01 15.5 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 Carboxyl_trans PF01039.22 gi|124028017|ref|YP_001013337.1| - 2e-183 610.5 0.0 2.3e-183 610.4 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|124028017|ref|YP_001013337.1| - 0.00031 20.3 2.6 0.0009 18.8 0.2 2.2 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) Biotin_lipoyl PF00364.22 gi|124028018|ref|YP_001013338.1| - 8.9e-15 54.3 1.5 1e-14 54.1 0.4 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|124028018|ref|YP_001013338.1| - 1.7e-05 24.5 0.8 0.011 15.6 0.3 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|124028018|ref|YP_001013338.1| - 0.00098 19.0 0.1 0.0021 18.0 0.1 1.5 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain DUF2118 PF09891.9 gi|124028018|ref|YP_001013338.1| - 0.0045 17.0 0.8 0.0066 16.4 0.3 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2118) GCV_H PF01597.19 gi|124028018|ref|YP_001013338.1| - 0.0055 16.6 0.1 0.017 15.0 0.1 1.8 1 1 0 1 1 1 1 Glycine cleavage H-protein HlyD_D23 PF16576.5 gi|124028018|ref|YP_001013338.1| - 0.0067 15.7 0.2 1.3 8.2 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 gi|124028018|ref|YP_001013338.1| - 0.054 13.3 0.2 1.8 8.3 0.2 2.4 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HlyD_3 PF13437.6 gi|124028018|ref|YP_001013338.1| - 0.067 13.9 0.1 3.3 8.4 0.0 2.5 3 0 0 3 3 3 0 HlyD family secretion protein DUF5608 PF18356.1 gi|124028018|ref|YP_001013338.1| - 0.23 11.5 1.4 0.37 10.8 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5608) CPSase_L_D2 PF02786.17 gi|124028019|ref|YP_001013339.1| - 3.1e-65 219.6 0.1 4.3e-65 219.2 0.1 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_C PF02785.19 gi|124028019|ref|YP_001013339.1| - 6.5e-37 125.9 0.0 1.2e-36 125.1 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_carb_N PF00289.22 gi|124028019|ref|YP_001013339.1| - 1.5e-31 109.2 0.0 3.2e-31 108.1 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain ATP-grasp PF02222.22 gi|124028019|ref|YP_001013339.1| - 8.9e-11 41.6 0.0 1.6e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|124028019|ref|YP_001013339.1| - 9.3e-10 38.4 0.0 1.7e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_5 PF13549.6 gi|124028019|ref|YP_001013339.1| - 4.9e-08 32.7 0.0 1.2e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|124028019|ref|YP_001013339.1| - 7.8e-06 25.8 0.0 2e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|124028019|ref|YP_001013339.1| - 6.9e-05 22.9 0.0 0.00012 22.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|124028019|ref|YP_001013339.1| - 8.4e-05 22.2 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|124028019|ref|YP_001013339.1| - 0.00076 19.1 0.0 0.0038 16.8 0.0 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_ST PF14397.6 gi|124028019|ref|YP_001013339.1| - 0.0012 18.2 0.0 0.21 10.8 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp BPL_LplA_LipB PF03099.19 gi|124028020|ref|YP_001013340.1| - 1.5e-11 44.4 0.1 9.2e-11 41.8 0.1 2.0 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|124028020|ref|YP_001013340.1| - 2.1e-07 30.7 0.0 4.2e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain dUTPase PF00692.19 gi|124028021|ref|YP_001013341.1| - 6.3e-17 61.5 0.0 8.6e-17 61.0 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|124028021|ref|YP_001013341.1| - 1.3e-05 24.2 0.0 2.3e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Desulfoferrodox PF01880.18 gi|124028022|ref|YP_001013342.1| - 1.5e-28 99.2 0.0 1.9e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|124028022|ref|YP_001013342.1| - 1.4e-07 31.7 0.0 1.8e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY MFS_1 PF07690.16 gi|124028023|ref|YP_001013343.1| - 9.3e-32 110.3 34.1 4.7e-17 62.0 20.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|124028023|ref|YP_001013343.1| - 4.4e-10 39.0 10.4 0.00011 21.2 0.0 2.3 2 0 0 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|124028023|ref|YP_001013343.1| - 0.0011 17.9 5.8 0.0052 15.6 0.0 3.1 3 1 0 3 3 3 1 LacY proton/sugar symporter Nuc_H_symport PF03825.16 gi|124028023|ref|YP_001013343.1| - 5.8 5.8 12.1 0.062 12.3 0.2 2.3 2 1 0 2 2 2 0 Nucleoside H+ symporter Phage_integr_3 PF16795.5 gi|124028025|ref|YP_001013345.1| - 3.2e-13 49.9 0.0 1.1e-12 48.1 0.0 1.7 1 1 0 1 1 1 1 Archaeal phage integrase Resolvase PF00239.21 gi|124028026|ref|YP_001013346.1| - 2.2e-07 31.1 0.0 5e-07 29.9 0.0 1.6 2 0 0 2 2 2 1 Resolvase, N terminal domain HTH_23 PF13384.6 gi|124028026|ref|YP_001013346.1| - 0.00024 20.8 0.1 0.00064 19.4 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_8 PF02954.19 gi|124028026|ref|YP_001013346.1| - 0.0009 19.0 0.3 0.0009 19.0 0.3 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_psq PF05225.16 gi|124028026|ref|YP_001013346.1| - 0.001 18.7 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_3 PF01381.22 gi|124028026|ref|YP_001013346.1| - 0.0013 18.7 0.1 0.0026 17.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_38 PF13936.6 gi|124028026|ref|YP_001013346.1| - 0.0014 18.4 0.2 0.0014 18.4 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|124028026|ref|YP_001013346.1| - 0.0016 17.8 0.0 0.0029 17.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 gi|124028026|ref|YP_001013346.1| - 0.01 15.5 2.5 0.061 13.0 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_AraC PF00165.23 gi|124028026|ref|YP_001013346.1| - 0.02 15.0 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family RWP-RK PF02042.15 gi|124028026|ref|YP_001013346.1| - 0.025 14.6 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 RWP-RK domain DUF2089 PF09862.9 gi|124028026|ref|YP_001013346.1| - 0.044 13.8 0.1 0.067 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) CENP-B_N PF04218.13 gi|124028026|ref|YP_001013346.1| - 0.046 13.3 0.1 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain HTH_30 PF13556.6 gi|124028026|ref|YP_001013346.1| - 0.068 13.0 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_IS1 PF12759.7 gi|124028026|ref|YP_001013346.1| - 0.07 12.8 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 InsA C-terminal domain HTH_35 PF13693.6 gi|124028026|ref|YP_001013346.1| - 0.073 13.1 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|124028026|ref|YP_001013346.1| - 0.089 12.8 4.5 0.14 12.2 0.0 2.4 2 1 1 3 3 3 0 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|124028026|ref|YP_001013346.1| - 0.35 10.4 7.1 3.7 7.2 4.6 2.8 2 1 0 2 2 2 0 Sigma-70, region 4 60KD_IMP PF02096.20 gi|124028028|ref|YP_001013348.1| - 0.1 12.5 2.4 7.7 6.4 0.1 2.5 2 1 0 2 2 2 0 60Kd inner membrane protein Tail_VII PF17091.5 gi|124028028|ref|YP_001013348.1| - 0.26 11.2 0.8 0.73 9.8 0.8 1.7 1 0 0 1 1 1 0 Inovirus G7P protein Exosortase_EpsH PF09721.10 gi|124028029|ref|YP_001013349.1| - 2.1e-06 27.5 15.7 2.7e-06 27.1 15.7 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) SPA PF08616.10 gi|124028029|ref|YP_001013349.1| - 0.067 13.1 0.5 0.12 12.4 0.5 1.4 1 1 0 1 1 1 0 Stabilization of polarity axis Glyco_tranf_2_3 PF13641.6 gi|124028030|ref|YP_001013350.1| - 2.5e-19 70.1 0.0 3.5e-19 69.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|124028030|ref|YP_001013350.1| - 2.8e-17 63.1 0.0 4.1e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|124028030|ref|YP_001013350.1| - 3.2e-16 59.8 1.2 5.8e-16 59.0 1.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|124028030|ref|YP_001013350.1| - 9e-13 48.1 0.0 1.4e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Cellulose_synt PF03552.14 gi|124028030|ref|YP_001013350.1| - 0.001 17.7 2.1 0.21 10.1 0.7 3.1 3 0 0 3 3 3 2 Cellulose synthase HTH_5 PF01022.20 gi|124028031|ref|YP_001013351.1| - 0.0094 15.8 0.1 0.022 14.6 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|124028031|ref|YP_001013351.1| - 0.015 15.3 0.0 0.3 11.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Sulfolobus_pRN PF05584.11 gi|124028031|ref|YP_001013351.1| - 0.048 13.7 0.4 0.13 12.4 0.4 1.7 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein UPF0102 PF02021.17 gi|124028033|ref|YP_001013353.1| - 0.0023 18.1 0.0 0.004 17.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 Erf4 PF10256.9 gi|124028033|ref|YP_001013353.1| - 0.021 14.9 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 7/ERF4 family NAS PF03059.16 gi|124028033|ref|YP_001013353.1| - 0.082 12.2 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Nicotianamine synthase protein Rubrerythrin PF02915.17 gi|124028034|ref|YP_001013354.1| - 2.5e-06 28.0 9.0 0.0024 18.3 1.0 2.3 2 0 0 2 2 2 2 Rubrerythrin VIT1 PF01988.19 gi|124028034|ref|YP_001013354.1| - 1.7e-05 24.8 21.3 0.00068 19.6 4.4 2.4 1 1 1 2 2 2 2 VIT family SPC25 PF06703.11 gi|124028034|ref|YP_001013354.1| - 0.0053 16.6 1.0 0.017 15.0 0.2 1.9 1 1 1 2 2 2 1 Microsomal signal peptidase 25 kDa subunit (SPC25) Ferritin_2 PF13668.6 gi|124028034|ref|YP_001013354.1| - 0.0069 16.6 0.1 0.28 11.4 0.0 2.4 1 1 1 2 2 2 1 Ferritin-like domain FxsA PF04186.13 gi|124028034|ref|YP_001013354.1| - 0.0096 16.0 2.0 0.026 14.6 1.3 2.0 1 1 1 2 2 2 1 FxsA cytoplasmic membrane protein COQ7 PF03232.13 gi|124028034|ref|YP_001013354.1| - 0.01 15.7 4.0 0.032 14.0 0.4 2.7 1 1 2 3 3 3 1 Ubiquinone biosynthesis protein COQ7 Metal_resist PF13801.6 gi|124028034|ref|YP_001013354.1| - 0.038 14.2 0.7 0.096 12.9 0.7 1.7 1 0 0 1 1 1 0 Heavy-metal resistance Ferritin PF00210.24 gi|124028034|ref|YP_001013354.1| - 0.058 13.3 0.7 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 Ferritin-like domain DoxX_2 PF13564.6 gi|124028034|ref|YP_001013354.1| - 0.1 12.7 8.5 0.14 12.3 7.5 1.8 1 1 1 2 2 2 0 DoxX-like family TMEM141 PF15110.6 gi|124028034|ref|YP_001013354.1| - 0.28 11.8 2.6 2.6 8.7 0.2 2.4 1 1 1 2 2 2 0 TMEM141 protein family DUF2613 PF11021.8 gi|124028034|ref|YP_001013354.1| - 4.9 7.3 13.5 4 7.6 4.5 3.4 2 2 1 3 3 3 0 Protein of unknown function (DUF2613) Nitroreductase PF00881.24 gi|124028035|ref|YP_001013355.1| - 3.5e-28 98.8 0.0 4.9e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|124028035|ref|YP_001013355.1| - 1.7e-09 37.5 0.1 2.6e-05 23.9 0.1 2.7 2 1 1 3 3 3 2 Putative TM nitroreductase Peptidase_M28 PF04389.17 gi|124028036|ref|YP_001013356.1| - 4.2e-09 36.4 0.1 1e-07 31.8 0.1 2.3 1 1 0 1 1 1 1 Peptidase family M28 DUF4910 PF16254.5 gi|124028036|ref|YP_001013356.1| - 3.7e-06 26.0 0.0 7.1e-06 25.1 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4910) DUF2499 PF10693.9 gi|124028036|ref|YP_001013356.1| - 0.087 13.1 0.0 0.27 11.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2499) tRNA-synt_1d PF00750.19 gi|124028037|ref|YP_001013357.1| - 8.9e-34 117.0 0.0 3.8e-23 82.0 0.0 2.2 1 1 1 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|124028037|ref|YP_001013357.1| - 1.8e-24 86.2 0.1 1.8e-24 86.2 0.1 2.4 3 0 0 3 3 3 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|124028037|ref|YP_001013357.1| - 1.9e-08 34.8 0.0 6.2e-08 33.1 0.0 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1 PF00133.22 gi|124028037|ref|YP_001013357.1| - 0.0064 14.8 0.5 0.72 8.0 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|124028037|ref|YP_001013357.1| - 0.02 13.7 0.0 4.9 5.8 0.1 3.0 3 0 0 3 3 3 0 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|124028037|ref|YP_001013357.1| - 0.12 11.3 0.0 14 4.5 0.0 2.5 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|124028037|ref|YP_001013357.1| - 0.13 11.6 0.0 0.5 9.7 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain DUF1090 PF06476.12 gi|124028037|ref|YP_001013357.1| - 0.84 9.8 3.2 1.3 9.2 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1090) DUF167 PF02594.16 gi|124028038|ref|YP_001013358.1| - 1.9e-12 47.1 0.0 2.5e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 PikAIV_N PF18605.1 gi|124028038|ref|YP_001013358.1| - 0.025 14.1 0.3 0.13 11.9 0.1 2.0 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain CBS PF00571.28 gi|124028039|ref|YP_001013359.1| - 6.1e-16 58.6 6.2 5.9e-05 23.4 0.0 4.3 4 0 0 4 4 4 4 CBS domain DUF2283 PF10049.9 gi|124028040|ref|YP_001013360.1| - 3.5e-11 43.2 0.6 4.5e-11 42.8 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) AdoMet_dc PF02675.15 gi|124028041|ref|YP_001013361.1| - 1.7e-34 118.3 0.0 1.9e-34 118.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase AbiEi_4 PF13338.6 gi|124028043|ref|YP_001013363.1| - 0.0021 18.2 0.5 0.0047 17.1 0.5 1.7 1 1 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin PaaX PF07848.12 gi|124028043|ref|YP_001013363.1| - 0.011 16.0 0.1 0.021 15.1 0.1 1.5 1 0 0 1 1 1 0 PaaX-like protein TBPIP PF07106.13 gi|124028043|ref|YP_001013363.1| - 0.065 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain DUF131 PF01998.17 gi|124028045|ref|YP_001013365.1| - 3.4e-15 55.4 7.2 3.4e-15 55.4 7.2 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 Neurensin PF14927.6 gi|124028045|ref|YP_001013365.1| - 0.013 15.2 4.1 0.07 12.8 0.3 2.0 2 0 0 2 2 2 0 Neurensin SPW PF03779.14 gi|124028045|ref|YP_001013365.1| - 0.15 11.7 0.5 0.15 11.7 0.5 2.2 2 0 0 2 2 2 0 SPW repeat DUF4692 PF15763.5 gi|124028045|ref|YP_001013365.1| - 1.3 9.4 2.4 0.66 10.4 0.3 1.5 2 0 0 2 2 2 0 Regulator of human erythroid cell expansion (RHEX) DUF3185 PF11381.8 gi|124028045|ref|YP_001013365.1| - 1.7 8.7 13.1 6.4 6.9 13.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3185) DUF202 PF02656.15 gi|124028045|ref|YP_001013365.1| - 4.4 7.8 9.1 25 5.4 9.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF202) LapA_dom PF06305.11 gi|124028045|ref|YP_001013365.1| - 6 6.8 7.0 9.3 6.2 1.3 2.2 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF2614 PF11023.8 gi|124028045|ref|YP_001013365.1| - 7.2 6.8 6.1 4.4 7.4 0.5 2.0 2 0 0 2 2 2 0 Zinc-ribbon containing domain Syndecan PF01034.20 gi|124028045|ref|YP_001013365.1| - 9.3 6.3 6.7 2 8.4 1.1 2.0 2 0 0 2 2 2 0 Syndecan domain Methyltransf_25 PF13649.6 gi|124028046|ref|YP_001013366.1| - 8.4e-09 36.0 0.1 2.2e-08 34.7 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.14 gi|124028046|ref|YP_001013366.1| - 4.4e-07 29.6 0.0 6.8e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|124028046|ref|YP_001013366.1| - 7.4e-07 28.8 0.0 1.1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|124028046|ref|YP_001013366.1| - 1.7e-06 27.5 0.0 2.5e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_11 PF08241.12 gi|124028046|ref|YP_001013366.1| - 2.1e-06 28.3 0.0 5.3e-06 27.0 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain CMAS PF02353.20 gi|124028046|ref|YP_001013366.1| - 2.3e-06 27.1 0.0 3.3e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|124028046|ref|YP_001013366.1| - 5.4e-06 26.3 0.0 7.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|124028046|ref|YP_001013366.1| - 4.1e-05 22.8 0.0 5.3e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|124028046|ref|YP_001013366.1| - 9.8e-05 22.4 0.0 0.00015 21.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|124028046|ref|YP_001013366.1| - 0.001 19.8 0.0 0.0022 18.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|124028046|ref|YP_001013366.1| - 0.0028 17.6 0.0 0.0045 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|124028046|ref|YP_001013366.1| - 0.0031 17.3 0.0 0.0047 16.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|124028046|ref|YP_001013366.1| - 0.0066 16.3 0.0 0.0098 15.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|124028046|ref|YP_001013366.1| - 0.0073 16.2 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|124028046|ref|YP_001013366.1| - 0.025 13.9 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family UPF0020 PF01170.18 gi|124028046|ref|YP_001013366.1| - 0.049 13.3 0.0 0.11 12.1 0.0 1.6 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 MetW PF07021.12 gi|124028046|ref|YP_001013366.1| - 0.05 13.2 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.10 gi|124028046|ref|YP_001013366.1| - 0.065 12.8 0.0 0.069 12.7 0.0 1.3 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|124028046|ref|YP_001013366.1| - 0.081 12.2 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase tRNA-synt_1e PF01406.19 gi|124028047|ref|YP_001013367.1| - 1.5e-130 434.9 0.0 2.4e-130 434.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|124028047|ref|YP_001013367.1| - 6.1e-19 68.0 0.2 2.1e-10 39.9 0.2 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|124028047|ref|YP_001013367.1| - 1.2e-08 35.3 0.6 3.7e-08 33.7 0.6 1.9 1 0 0 1 1 1 1 DALR domain tRNA-synt_1 PF00133.22 gi|124028047|ref|YP_001013367.1| - 6.2e-08 31.4 0.0 5.7e-06 24.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|124028047|ref|YP_001013367.1| - 3.7e-05 22.8 0.1 0.00092 18.2 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1c PF00749.21 gi|124028047|ref|YP_001013367.1| - 0.093 11.6 0.1 0.31 9.9 0.1 1.9 1 1 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain TolA_bind_tri PF16331.5 gi|124028047|ref|YP_001013367.1| - 0.32 11.1 1.4 0.44 10.6 0.3 1.8 2 0 0 2 2 2 0 TolA binding protein trimerisation Radical_SAM PF04055.21 gi|124028048|ref|YP_001013368.1| - 9.4e-08 32.6 0.5 1.1e-06 29.2 0.4 2.6 2 1 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|124028048|ref|YP_001013368.1| - 0.26 11.0 0.1 21 4.7 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1848) THUMP PF02926.17 gi|124028049|ref|YP_001013369.1| - 7.5e-09 35.8 0.0 1.1e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 THUMP domain DUF87 PF01935.17 gi|124028050|ref|YP_001013370.1| - 1.3e-44 152.9 0.4 2.1e-44 152.3 0.4 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|124028050|ref|YP_001013370.1| - 1.2e-09 37.4 0.2 8.8e-05 21.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|124028050|ref|YP_001013370.1| - 8.9e-05 22.6 0.3 0.00037 20.6 0.0 2.2 2 0 0 2 2 2 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|124028050|ref|YP_001013370.1| - 0.00039 19.4 0.1 0.0012 17.8 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|124028050|ref|YP_001013370.1| - 0.0044 16.0 0.3 0.69 8.8 0.5 2.7 2 1 0 2 2 2 1 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|124028050|ref|YP_001013370.1| - 0.0082 15.5 0.4 0.42 9.9 0.0 2.5 3 0 0 3 3 3 1 FtsK/SpoIIIE family T4SS-DNA_transf PF02534.14 gi|124028050|ref|YP_001013370.1| - 0.063 12.1 0.1 0.1 11.4 0.1 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer DUF148 PF02520.17 gi|124028050|ref|YP_001013370.1| - 0.082 13.0 1.0 0.3 11.2 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF148 CENP-W PF15510.6 gi|124028050|ref|YP_001013370.1| - 0.085 13.1 0.0 0.37 11.0 0.0 2.2 2 0 0 2 2 2 0 CENP-W protein Dynamin_M PF01031.20 gi|124028050|ref|YP_001013370.1| - 0.16 11.2 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Dynamin central region Metallophos PF00149.28 gi|124028051|ref|YP_001013371.1| - 1.3e-14 55.2 0.3 1.9e-14 54.7 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|124028051|ref|YP_001013371.1| - 1.8e-13 51.0 0.0 3.4e-13 50.1 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SMC_N PF02463.19 gi|124028052|ref|YP_001013372.1| - 4.4e-22 78.6 0.4 1.7e-10 40.8 0.3 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|124028052|ref|YP_001013372.1| - 2e-17 63.9 0.0 5.5e-11 42.8 0.0 3.7 2 2 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|124028052|ref|YP_001013372.1| - 4e-16 60.1 84.1 8.3e-14 52.6 30.1 6.4 1 1 1 3 3 1 1 AAA domain Rad50_zn_hook PF04423.14 gi|124028052|ref|YP_001013372.1| - 1.1e-11 44.4 0.1 1.1e-11 44.4 0.1 6.3 8 1 0 8 8 3 1 Rad50 zinc hook motif AAA_13 PF13166.6 gi|124028052|ref|YP_001013372.1| - 2.1e-11 43.2 49.7 6.3e-06 25.2 31.2 4.9 2 1 2 4 4 4 2 AAA domain BLOC1_2 PF10046.9 gi|124028052|ref|YP_001013372.1| - 1.3e-07 31.9 57.1 0.0033 17.7 0.4 9.7 3 2 6 9 9 8 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|124028052|ref|YP_001013372.1| - 3.5e-07 30.4 7.4 0.81 9.7 0.2 6.2 3 3 2 5 5 5 1 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.11 gi|124028052|ref|YP_001013372.1| - 6.2e-07 28.6 87.1 0.0011 17.9 15.4 5.8 3 2 3 6 6 6 3 Spc7 kinetochore protein Sec34 PF04136.15 gi|124028052|ref|YP_001013372.1| - 8.4e-07 29.0 34.1 0.002 18.0 4.6 6.6 4 2 1 6 6 5 2 Sec34-like family AAA_21 PF13304.6 gi|124028052|ref|YP_001013372.1| - 1.2e-06 28.6 27.0 0.00044 20.2 4.8 4.2 2 2 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system NPV_P10 PF05531.12 gi|124028052|ref|YP_001013372.1| - 2.3e-06 28.0 11.9 1.6 9.3 0.7 7.4 4 2 2 7 7 6 1 Nucleopolyhedrovirus P10 protein ABC_tran PF00005.27 gi|124028052|ref|YP_001013372.1| - 6.4e-06 26.7 12.8 0.011 16.2 0.0 5.0 3 2 0 3 3 2 2 ABC transporter SbcCD_C PF13558.6 gi|124028052|ref|YP_001013372.1| - 1.3e-05 25.3 0.0 3.1e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|124028052|ref|YP_001013372.1| - 2.4e-05 24.0 0.0 4.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|124028052|ref|YP_001013372.1| - 6.4e-05 22.6 0.0 6.4e-05 22.6 0.0 6.1 4 3 2 7 7 7 1 AAA domain DUF1664 PF07889.12 gi|124028052|ref|YP_001013372.1| - 0.00028 20.9 39.9 0.24 11.4 0.1 7.4 4 2 4 8 8 8 4 Protein of unknown function (DUF1664) TMF_TATA_bd PF12325.8 gi|124028052|ref|YP_001013372.1| - 0.0021 18.2 12.8 0.0021 18.2 12.8 7.5 2 2 5 7 7 6 2 TATA element modulatory factor 1 TATA binding ABC_tran_CTD PF16326.5 gi|124028052|ref|YP_001013372.1| - 0.0032 17.7 9.1 0.0032 17.7 9.1 10.5 3 3 7 10 10 8 2 ABC transporter C-terminal domain FapA PF03961.13 gi|124028052|ref|YP_001013372.1| - 0.0036 16.0 4.2 0.0036 16.0 4.2 6.5 1 1 6 7 7 7 2 Flagellar Assembly Protein A Leu_zip PF15294.6 gi|124028052|ref|YP_001013372.1| - 0.0057 16.2 6.2 0.0057 16.2 6.2 4.6 3 1 2 5 5 5 2 Leucine zipper Prefoldin_2 PF01920.20 gi|124028052|ref|YP_001013372.1| - 0.0063 16.5 3.0 0.0063 16.5 3.0 11.0 2 2 9 11 11 9 3 Prefoldin subunit Exonuc_VII_L PF02601.15 gi|124028052|ref|YP_001013372.1| - 0.0075 15.9 57.9 0.26 10.8 5.8 4.5 1 1 0 2 2 1 1 Exonuclease VII, large subunit GAS PF13851.6 gi|124028052|ref|YP_001013372.1| - 0.011 15.1 97.1 0.25 10.7 10.5 7.4 2 2 5 7 7 7 0 Growth-arrest specific micro-tubule binding Med9 PF07544.13 gi|124028052|ref|YP_001013372.1| - 0.014 15.5 4.8 0.014 15.5 4.8 8.0 6 4 3 9 9 7 0 RNA polymerase II transcription mediator complex subunit 9 DUF948 PF06103.11 gi|124028052|ref|YP_001013372.1| - 0.014 15.6 12.3 10 6.4 0.0 7.1 4 3 4 8 8 8 0 Bacterial protein of unknown function (DUF948) DUF2937 PF11157.8 gi|124028052|ref|YP_001013372.1| - 0.021 14.5 14.9 1.9 8.2 1.2 4.3 4 0 0 4 4 3 0 Protein of unknown function (DUF2937) T3SSipB PF16535.5 gi|124028052|ref|YP_001013372.1| - 0.025 15.1 14.6 0.38 11.2 1.4 4.6 2 2 2 4 4 4 0 Type III cell invasion protein SipB Cytochrom_B562 PF07361.11 gi|124028052|ref|YP_001013372.1| - 0.028 15.1 17.8 2.5 8.8 0.2 5.8 3 2 4 7 7 7 0 Cytochrome b562 MapZ_EC1 PF18041.1 gi|124028052|ref|YP_001013372.1| - 0.032 14.5 21.9 0.12 12.6 0.3 6.3 4 3 3 7 7 7 0 MapZ extracellular domain 1 DUF5082 PF16888.5 gi|124028052|ref|YP_001013372.1| - 0.048 14.0 56.0 0.74 10.1 5.9 7.9 2 2 5 7 7 7 0 Domain of unknown function (DUF5082) Phage_GP20 PF06810.11 gi|124028052|ref|YP_001013372.1| - 0.052 13.4 40.9 0.31 10.8 0.3 6.2 2 2 2 5 5 5 0 Phage minor structural protein GP20 AAA_16 PF13191.6 gi|124028052|ref|YP_001013372.1| - 0.052 13.9 0.0 0.052 13.9 0.0 5.1 2 1 0 3 3 1 0 AAA ATPase domain CTU2 PF10288.9 gi|124028052|ref|YP_001013372.1| - 0.13 12.5 0.4 0.44 10.8 0.4 2.0 1 0 0 1 1 1 0 Cytoplasmic tRNA 2-thiolation protein 2 FlxA PF14282.6 gi|124028052|ref|YP_001013372.1| - 0.24 11.4 19.0 0.08 12.9 8.8 3.6 3 1 0 3 3 2 0 FlxA-like protein FliD_N PF02465.18 gi|124028052|ref|YP_001013372.1| - 0.24 12.1 11.4 2.6 8.8 1.5 5.9 3 1 3 6 6 6 0 Flagellar hook-associated protein 2 N-terminus HMMR_N PF15905.5 gi|124028052|ref|YP_001013372.1| - 0.35 10.3 87.4 0.071 12.6 13.9 4.2 2 2 2 4 4 4 0 Hyaluronan mediated motility receptor N-terminal WXG100 PF06013.12 gi|124028052|ref|YP_001013372.1| - 0.48 10.7 11.4 11 6.3 0.1 6.5 5 4 2 7 7 5 0 Proteins of 100 residues with WXG AAA_22 PF13401.6 gi|124028052|ref|YP_001013372.1| - 0.5 10.6 0.0 0.5 10.6 0.0 4.2 4 1 0 4 4 1 0 AAA domain DUF4407 PF14362.6 gi|124028052|ref|YP_001013372.1| - 0.54 9.6 46.6 0.56 9.5 9.2 4.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) Sec20 PF03908.13 gi|124028052|ref|YP_001013372.1| - 0.55 10.2 16.9 37 4.3 0.1 6.8 3 2 4 7 7 7 0 Sec20 GTP_EFTU PF00009.27 gi|124028052|ref|YP_001013372.1| - 0.71 9.4 2.1 1.4 8.4 0.0 2.6 2 1 0 2 2 1 0 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|124028052|ref|YP_001013372.1| - 0.87 9.5 7.1 3.2 7.6 0.0 4.2 4 1 0 4 4 3 0 RsgA GTPase Laminin_II PF06009.12 gi|124028052|ref|YP_001013372.1| - 1.4 9.0 49.1 0.66 10.0 4.6 7.3 2 2 6 8 8 8 0 Laminin Domain II EzrA PF06160.12 gi|124028052|ref|YP_001013372.1| - 1.9 6.6 75.2 0.0052 15.0 13.5 5.4 2 2 3 5 5 4 0 Septation ring formation regulator, EzrA HemX PF04375.14 gi|124028052|ref|YP_001013372.1| - 2.2 7.5 35.9 2 7.6 9.0 5.5 2 2 4 6 6 6 0 HemX, putative uroporphyrinogen-III C-methyltransferase Shugoshin_N PF07558.11 gi|124028052|ref|YP_001013372.1| - 2.4 8.1 11.8 1.5 8.7 2.8 4.6 2 1 1 3 3 3 0 Shugoshin N-terminal coiled-coil region TelA PF05816.11 gi|124028052|ref|YP_001013372.1| - 3.9 6.4 50.6 0.64 9.0 3.6 4.9 2 2 1 4 4 4 0 Toxic anion resistance protein (TelA) MCPsignal PF00015.21 gi|124028052|ref|YP_001013372.1| - 5.7 6.7 12.9 2.2 8.1 0.8 4.6 5 0 0 5 5 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Occludin_ELL PF07303.13 gi|124028052|ref|YP_001013372.1| - 6.7 7.5 58.5 7.4 7.4 5.4 7.7 3 3 4 7 7 7 0 Occludin homology domain Prominin PF05478.11 gi|124028052|ref|YP_001013372.1| - 7.3 4.4 23.6 1.8 6.4 0.5 4.0 3 1 0 4 4 4 0 Prominin DHR10 PF18595.1 gi|124028052|ref|YP_001013372.1| - 8.1 6.5 114.7 0.24 11.5 6.6 8.4 2 2 6 8 8 7 0 Designed helical repeat protein 10 domain Gln-synt_C PF00120.24 gi|124028054|ref|YP_001013374.1| - 2.5e-119 398.3 0.0 2.9e-119 398.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|124028054|ref|YP_001013374.1| - 1.6e-17 63.0 0.0 2.7e-17 62.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain PhosphMutase PF10143.9 gi|124028056|ref|YP_001013376.1| - 4.8e-50 169.7 0.0 6.5e-50 169.3 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|124028056|ref|YP_001013376.1| - 7.5e-24 84.4 0.0 9.5e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|124028056|ref|YP_001013376.1| - 0.00051 19.7 0.0 0.0032 17.1 0.0 2.1 3 0 0 3 3 3 1 Type I phosphodiesterase / nucleotide pyrophosphatase HD PF01966.22 gi|124028057|ref|YP_001013377.1| - 4.2e-11 43.1 0.3 6.6e-11 42.5 0.3 1.3 1 0 0 1 1 1 1 HD domain NifW PF03206.14 gi|124028057|ref|YP_001013377.1| - 0.041 14.4 0.0 0.09 13.3 0.0 1.7 2 0 0 2 2 2 0 Nitrogen fixation protein NifW VIT1 PF01988.19 gi|124028058|ref|YP_001013378.1| - 0.00014 21.8 7.3 0.00014 21.8 7.3 2.1 1 1 1 2 2 2 2 VIT family Abhydrolase_9_N PF15420.6 gi|124028058|ref|YP_001013378.1| - 1.5 8.7 9.4 3.4 7.6 9.4 1.6 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus zf-FPG_IleRS PF06827.14 gi|124028059|ref|YP_001013379.1| - 0.00013 21.7 6.5 0.075 12.9 0.3 3.0 3 0 0 3 3 3 2 Zinc finger found in FPG and IleRS zf_UBZ PF18439.1 gi|124028059|ref|YP_001013379.1| - 0.0053 16.3 0.9 1.1 8.9 0.1 2.2 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger Mu-like_Com PF10122.9 gi|124028059|ref|YP_001013379.1| - 0.012 15.0 0.3 2.2 7.8 0.0 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com DZR PF12773.7 gi|124028059|ref|YP_001013379.1| - 0.014 15.4 0.0 0.022 14.8 0.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|124028059|ref|YP_001013379.1| - 0.024 14.4 1.4 2 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|124028059|ref|YP_001013379.1| - 0.033 13.5 1.7 0.25 10.7 2.2 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-ZPR1 PF03367.13 gi|124028059|ref|YP_001013379.1| - 0.04 13.8 0.0 0.043 13.7 0.0 1.1 1 0 0 1 1 1 0 ZPR1 zinc-finger domain zf_C2H2_10 PF18414.1 gi|124028059|ref|YP_001013379.1| - 0.043 13.3 0.5 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger NOB1_Zn_bind PF08772.11 gi|124028059|ref|YP_001013379.1| - 0.046 13.9 0.2 4.3 7.6 0.0 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_4 PF13717.6 gi|124028059|ref|YP_001013379.1| - 0.049 13.6 3.8 2.8 7.9 3.7 2.6 1 1 1 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|124028059|ref|YP_001013379.1| - 0.049 14.3 4.5 0.88 10.3 0.1 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.6 gi|124028059|ref|YP_001013379.1| - 0.05 13.5 0.1 0.91 9.5 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 YacG PF03884.14 gi|124028059|ref|YP_001013379.1| - 0.056 13.2 0.5 1.4 8.7 0.1 2.1 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG zinc_ribbon_5 PF13719.6 gi|124028059|ref|YP_001013379.1| - 0.066 13.0 1.3 7.1 6.5 0.0 2.7 2 1 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|124028059|ref|YP_001013379.1| - 0.07 13.1 5.4 0.65 10.0 5.9 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|124028059|ref|YP_001013379.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 1 0 1 1 1 0 zinc-ribbons UPF0547 PF10571.9 gi|124028059|ref|YP_001013379.1| - 0.21 11.7 4.1 8 6.6 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2387 PF09526.10 gi|124028059|ref|YP_001013379.1| - 0.55 10.4 2.8 2.9 8.1 3.1 1.8 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zinc_ribbon_10 PF10058.9 gi|124028059|ref|YP_001013379.1| - 1.1 9.1 4.8 5.1 6.9 4.7 2.0 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-IS66 PF13005.7 gi|124028059|ref|YP_001013379.1| - 1.2 9.6 7.0 2.1 8.8 2.5 2.4 3 0 0 3 3 2 0 zinc-finger binding domain of transposase IS66 zf-HIT PF04438.16 gi|124028059|ref|YP_001013379.1| - 1.3 9.0 7.2 8.2 6.4 1.8 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF3797 PF12677.7 gi|124028059|ref|YP_001013379.1| - 3 7.8 6.8 0.91 9.5 1.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn_ribbon_recom PF13408.6 gi|124028059|ref|YP_001013379.1| - 4.2 8.0 7.8 15 6.2 7.8 1.9 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Radical_SAM PF04055.21 gi|124028060|ref|YP_001013380.1| - 8.1e-30 104.4 0.2 4.7e-29 101.9 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|124028060|ref|YP_001013380.1| - 2.8e-17 62.8 0.0 4.6e-17 62.1 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|124028060|ref|YP_001013380.1| - 1.4e-07 31.6 0.0 5.2e-07 29.8 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|124028060|ref|YP_001013380.1| - 9.5e-05 22.7 0.0 0.00028 21.2 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain UbiA PF01040.18 gi|124028061|ref|YP_001013381.1| - 1.8e-45 155.2 22.1 2.4e-45 154.8 22.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1345 PF07077.11 gi|124028061|ref|YP_001013381.1| - 0.03 14.0 7.6 0.87 9.3 0.2 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1345) PRA1 PF03208.19 gi|124028061|ref|YP_001013381.1| - 1 9.0 11.1 0.24 11.0 0.6 3.0 1 1 2 3 3 3 0 PRA1 family protein DUF2070 PF09843.9 gi|124028061|ref|YP_001013381.1| - 1.6 6.9 16.8 0.64 8.2 7.4 2.1 1 1 0 2 2 2 0 Predicted membrane protein (DUF2070) OTCace PF00185.24 gi|124028062|ref|YP_001013382.1| - 4.5e-60 202.3 0.0 7.4e-60 201.6 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|124028062|ref|YP_001013382.1| - 3.5e-49 166.6 0.0 7.4e-49 165.6 0.0 1.6 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Csa1 PF06023.12 gi|124028062|ref|YP_001013382.1| - 0.069 12.5 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated exonuclease Csa1 STT3 PF02516.14 gi|124028064|ref|YP_001013384.1| - 1.5e-19 70.3 31.8 2.9e-19 69.4 31.8 1.4 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|124028064|ref|YP_001013384.1| - 7.3e-05 23.0 16.4 7.3e-05 23.0 16.4 4.2 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Baculo_PEP_C PF04513.12 gi|124028065|ref|YP_001013385.1| - 0.0037 17.3 1.3 0.0047 17.0 1.3 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus T4_Gp59_N PF08993.10 gi|124028065|ref|YP_001013385.1| - 0.053 13.9 0.0 0.084 13.3 0.0 1.4 1 0 0 1 1 1 0 T4 gene Gp59 loader of gp41 DNA helicase Mce4_CUP1 PF11887.8 gi|124028065|ref|YP_001013385.1| - 0.092 12.2 0.3 0.14 11.6 0.3 1.4 1 1 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative CNDH2_N PF06278.11 gi|124028067|ref|YP_001013387.1| - 0.15 12.2 0.1 0.27 11.5 0.1 1.3 1 0 0 1 1 1 0 Condensin II complex subunit CAP-H2 or CNDH2, N-terminal HTH_32 PF13565.6 gi|124028068|ref|YP_001013388.1| - 0.003 18.2 4.0 0.17 12.5 0.9 2.8 1 1 2 3 3 3 2 Homeodomain-like domain CPSase_L_D3 PF02787.19 gi|124028068|ref|YP_001013388.1| - 0.045 14.1 0.0 0.062 13.7 0.0 1.3 1 1 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HTH_Tnp_Tc3_2 PF01498.18 gi|124028068|ref|YP_001013388.1| - 0.059 13.6 0.0 0.89 9.9 0.0 2.2 1 1 1 2 2 2 0 Transposase Rrf2 PF02082.20 gi|124028069|ref|YP_001013389.1| - 0.0074 16.6 0.0 0.014 15.7 0.0 1.6 1 1 0 1 1 1 1 Transcriptional regulator TFIIE_alpha PF02002.17 gi|124028069|ref|YP_001013389.1| - 0.089 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit CTP_transf_like PF01467.26 gi|124028070|ref|YP_001013390.1| - 1.4e-10 41.5 0.0 2.3e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase-like NAD_kinase PF01513.21 gi|124028071|ref|YP_001013391.1| - 1.6e-49 168.7 0.1 1.9e-49 168.5 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|124028071|ref|YP_001013391.1| - 1.1e-06 28.3 0.1 3.5e-06 26.7 0.0 1.9 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.22 gi|124028071|ref|YP_001013391.1| - 6.5e-05 22.9 0.1 0.00038 20.4 0.0 2.2 2 0 0 2 2 2 1 DeoR C terminal sensor domain DUF2866 PF11065.8 gi|124028071|ref|YP_001013391.1| - 0.046 13.8 0.1 0.3 11.2 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2866) SpoIIID PF12116.8 gi|124028071|ref|YP_001013391.1| - 0.062 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D Peptidase_M50 PF02163.22 gi|124028072|ref|YP_001013392.1| - 8.2e-07 28.5 11.3 0.00097 18.5 0.3 3.1 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M1 PF01433.20 gi|124028072|ref|YP_001013392.1| - 0.047 13.2 0.1 0.071 12.7 0.1 1.2 1 0 0 1 1 1 0 Peptidase family M1 domain tRNA_SAD PF07973.14 gi|124028073|ref|YP_001013393.1| - 4e-09 36.4 0.3 6.9e-09 35.7 0.3 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|124028073|ref|YP_001013393.1| - 7.9e-08 31.3 0.0 1.1e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) AAA_26 PF13500.6 gi|124028074|ref|YP_001013394.1| - 0.0073 16.2 0.0 0.11 12.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|124028074|ref|YP_001013394.1| - 0.031 14.3 0.0 0.053 13.6 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain HTH_45 PF14947.6 gi|124028075|ref|YP_001013395.1| - 0.00012 22.0 0.1 0.011 15.7 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|124028075|ref|YP_001013395.1| - 0.0026 17.9 1.2 0.18 11.9 0.0 3.0 3 0 0 3 3 3 1 Mrr N-terminal domain HTH_23 PF13384.6 gi|124028075|ref|YP_001013395.1| - 0.015 15.1 0.2 0.046 13.5 0.2 1.8 1 0 0 1 1 1 0 Homeodomain-like domain KorB PF08535.10 gi|124028075|ref|YP_001013395.1| - 0.057 13.5 0.0 0.2 11.7 0.0 1.9 1 0 0 1 1 1 0 KorB domain TrmB PF01978.19 gi|124028075|ref|YP_001013395.1| - 0.075 12.9 0.1 1.5 8.8 0.0 2.8 2 1 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|124028075|ref|YP_001013395.1| - 0.097 12.7 0.6 2.7 8.1 0.0 2.6 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain DUF2258 PF10015.9 gi|124028076|ref|YP_001013396.1| - 6.9e-32 109.4 0.3 1.7e-31 108.2 0.3 1.7 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) eIF-1a PF01176.19 gi|124028076|ref|YP_001013396.1| - 0.069 13.0 2.5 0.24 11.2 1.9 2.2 2 0 0 2 2 2 0 Translation initiation factor 1A / IF-1 Nre_N PF04894.12 gi|124028077|ref|YP_001013397.1| - 1.4e-94 316.9 0.0 1.7e-94 316.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|124028077|ref|YP_001013397.1| - 5.4e-31 106.8 0.1 9.1e-31 106.0 0.1 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DUF3390 PF11870.8 gi|124028077|ref|YP_001013397.1| - 0.11 12.9 0.0 12 6.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3390) eRF1_2 PF03464.15 gi|124028078|ref|YP_001013398.1| - 4.2e-40 137.1 0.1 7.2e-40 136.4 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|124028078|ref|YP_001013398.1| - 4e-17 62.7 0.8 2.9e-16 60.0 0.0 2.5 2 1 1 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_3 PF03465.15 gi|124028078|ref|YP_001013398.1| - 5.7e-17 62.2 1.5 8.9e-16 58.4 0.5 2.7 2 1 0 2 2 2 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|124028078|ref|YP_001013398.1| - 1.4e-15 57.8 1.0 2.1e-15 57.2 0.4 1.7 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 SpoU_sub_bind PF08032.12 gi|124028078|ref|YP_001013398.1| - 0.0026 18.0 0.0 0.07 13.4 0.0 2.7 2 0 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding eRF1_1 PF03463.15 gi|124028078|ref|YP_001013398.1| - 0.03 14.3 0.0 0.073 13.1 0.0 1.6 2 0 0 2 2 2 0 eRF1 domain 1 adh_short PF00106.25 gi|124028078|ref|YP_001013398.1| - 0.046 13.2 0.0 0.13 11.7 0.0 1.7 1 0 0 1 1 1 0 short chain dehydrogenase baeRF_family2 PF18844.1 gi|124028078|ref|YP_001013398.1| - 0.051 13.6 0.0 0.45 10.6 0.0 2.6 3 1 0 3 3 3 0 Bacterial archaeo-eukaryotic release factor family 2 ChlI PF13541.6 gi|124028079|ref|YP_001013399.1| - 0.065 13.1 0.0 0.068 13.0 0.0 1.2 1 0 0 1 1 1 0 Subunit ChlI of Mg-chelatase HTH_23 PF13384.6 gi|124028080|ref|YP_001013400.1| - 1.3e-05 24.8 0.1 4.9e-05 23.0 0.1 2.0 1 0 0 1 1 1 1 Homeodomain-like domain Spc7 PF08317.11 gi|124028080|ref|YP_001013400.1| - 4.1e-05 22.6 11.4 5.2e-05 22.3 11.4 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein HTH_38 PF13936.6 gi|124028080|ref|YP_001013400.1| - 6.3e-05 22.7 6.2 7.1e-05 22.5 0.2 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain EzrA PF06160.12 gi|124028080|ref|YP_001013400.1| - 0.00016 20.0 4.8 0.00021 19.6 4.8 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA DUF4763 PF15960.5 gi|124028080|ref|YP_001013400.1| - 0.00028 20.3 3.4 0.00047 19.5 3.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4763) Sigma70_r4_2 PF08281.12 gi|124028080|ref|YP_001013400.1| - 0.0003 20.4 0.1 0.0003 20.4 0.1 2.9 3 0 0 3 3 2 1 Sigma-70, region 4 HTH_40 PF14493.6 gi|124028080|ref|YP_001013400.1| - 0.00031 21.1 9.3 0.075 13.5 9.3 2.7 1 1 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|124028080|ref|YP_001013400.1| - 0.00037 20.0 0.0 0.00092 18.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|124028080|ref|YP_001013400.1| - 0.00037 20.0 1.6 0.0022 17.5 0.1 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|124028080|ref|YP_001013400.1| - 0.00074 19.5 0.1 0.002 18.1 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn helix DUF812 PF05667.11 gi|124028080|ref|YP_001013400.1| - 0.0019 17.2 7.8 0.0024 16.9 7.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) SHE3 PF17078.5 gi|124028080|ref|YP_001013400.1| - 0.0021 17.8 11.0 0.0038 17.0 11.0 1.4 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 DUF1664 PF07889.12 gi|124028080|ref|YP_001013400.1| - 0.0024 17.9 2.8 0.0056 16.7 2.8 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) Dor1 PF04124.12 gi|124028080|ref|YP_001013400.1| - 0.0029 16.4 5.6 0.0044 15.8 5.6 1.2 1 0 0 1 1 1 1 Dor1-like family TPR_MLP1_2 PF07926.12 gi|124028080|ref|YP_001013400.1| - 0.0032 17.5 17.9 0.0032 17.5 17.9 1.9 2 0 0 2 2 1 1 TPR/MLP1/MLP2-like protein CENP-F_leu_zip PF10473.9 gi|124028080|ref|YP_001013400.1| - 0.0042 17.1 20.1 0.0042 17.1 20.1 1.7 2 0 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3489 PF11994.8 gi|124028080|ref|YP_001013400.1| - 0.0044 17.0 0.1 0.0094 16.0 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) FapA PF03961.13 gi|124028080|ref|YP_001013400.1| - 0.0051 15.5 13.7 0.0068 15.1 13.6 1.3 1 1 0 1 1 1 1 Flagellar Assembly Protein A HTH_11 PF08279.12 gi|124028080|ref|YP_001013400.1| - 0.0051 16.7 0.1 0.0051 16.7 0.1 2.9 4 1 0 4 4 1 1 HTH domain Laminin_II PF06009.12 gi|124028080|ref|YP_001013400.1| - 0.0055 16.7 5.6 0.0055 16.7 5.6 1.6 2 0 0 2 2 1 1 Laminin Domain II V_ATPase_I PF01496.19 gi|124028080|ref|YP_001013400.1| - 0.0061 14.6 8.4 0.0085 14.1 8.4 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family HTH_31 PF13560.6 gi|124028080|ref|YP_001013400.1| - 0.0095 16.3 0.3 0.0095 16.3 0.3 2.7 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|124028080|ref|YP_001013400.1| - 0.0095 15.8 0.2 0.035 14.0 0.0 2.1 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family Terminase_5 PF06056.12 gi|124028080|ref|YP_001013400.1| - 0.0095 15.8 0.0 0.028 14.3 0.0 1.7 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) Tmemb_cc2 PF10267.9 gi|124028080|ref|YP_001013400.1| - 0.0098 15.1 5.2 0.013 14.6 5.2 1.3 1 0 0 1 1 1 1 Predicted transmembrane and coiled-coil 2 protein SidE PF12252.8 gi|124028080|ref|YP_001013400.1| - 0.0098 13.5 4.5 0.011 13.3 4.5 1.1 1 0 0 1 1 1 1 Dot/Icm substrate protein BLOC1_2 PF10046.9 gi|124028080|ref|YP_001013400.1| - 0.01 16.1 11.2 0.044 14.1 11.2 2.1 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HTH_DeoR PF08220.12 gi|124028080|ref|YP_001013400.1| - 0.013 15.2 0.8 0.034 13.9 0.0 2.2 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain FUSC PF04632.12 gi|124028080|ref|YP_001013400.1| - 0.014 14.0 3.3 0.017 13.7 3.3 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family 4HB_MCP_1 PF12729.7 gi|124028080|ref|YP_001013400.1| - 0.014 14.9 7.6 0.03 13.9 7.6 1.5 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction THOC7 PF05615.13 gi|124028080|ref|YP_001013400.1| - 0.016 15.5 12.2 0.016 15.5 12.2 1.8 2 0 0 2 2 1 0 Tho complex subunit 7 DivIC PF04977.15 gi|124028080|ref|YP_001013400.1| - 0.018 14.8 25.3 0.019 14.7 10.5 3.0 2 1 1 3 3 2 0 Septum formation initiator GAS PF13851.6 gi|124028080|ref|YP_001013400.1| - 0.021 14.1 19.3 0.1 11.9 19.4 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding HTH_28 PF13518.6 gi|124028080|ref|YP_001013400.1| - 0.022 14.8 2.3 0.024 14.8 0.2 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain DUF1640 PF07798.11 gi|124028080|ref|YP_001013400.1| - 0.034 14.2 5.7 0.049 13.7 5.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) Allexi_40kDa PF05549.11 gi|124028080|ref|YP_001013400.1| - 0.034 13.7 0.7 0.05 13.1 0.7 1.2 1 0 0 1 1 1 0 Allexivirus 40kDa protein Zw10 PF06248.13 gi|124028080|ref|YP_001013400.1| - 0.036 12.6 2.0 0.042 12.4 2.0 1.2 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 HTH_19 PF12844.7 gi|124028080|ref|YP_001013400.1| - 0.037 14.1 0.0 0.037 14.1 0.0 2.9 2 1 0 2 2 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|124028080|ref|YP_001013400.1| - 0.04 14.0 8.3 0.2 11.7 0.0 2.9 2 1 1 3 3 2 0 Helix-turn-helix domain Mod_r PF07200.13 gi|124028080|ref|YP_001013400.1| - 0.042 14.0 15.5 0.044 13.9 13.6 1.8 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein PRKG1_interact PF15898.5 gi|124028080|ref|YP_001013400.1| - 0.048 14.6 15.2 0.12 13.3 15.2 1.7 1 0 0 1 1 1 0 cGMP-dependent protein kinase interacting domain DUF4201 PF13870.6 gi|124028080|ref|YP_001013400.1| - 0.053 13.3 17.7 0.52 10.0 2.8 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) HTH_IclR PF09339.10 gi|124028080|ref|YP_001013400.1| - 0.054 13.3 0.2 0.15 11.9 0.2 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4140 PF13600.6 gi|124028080|ref|YP_001013400.1| - 0.055 13.9 15.8 0.79 10.2 1.5 2.7 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) AAA_13 PF13166.6 gi|124028080|ref|YP_001013400.1| - 0.056 12.1 4.2 0.067 11.8 4.2 1.2 1 0 0 1 1 1 0 AAA domain HTH_7 PF02796.15 gi|124028080|ref|YP_001013400.1| - 0.057 13.5 2.7 0.091 12.8 0.1 2.6 2 1 1 3 3 1 0 Helix-turn-helix domain of resolvase FlxA PF14282.6 gi|124028080|ref|YP_001013400.1| - 0.06 13.3 5.6 0.12 12.4 5.6 1.4 1 0 0 1 1 1 0 FlxA-like protein ATPase PF06745.13 gi|124028080|ref|YP_001013400.1| - 0.066 12.5 3.2 0.18 11.1 2.4 1.8 1 1 1 2 2 2 0 KaiC DUF4337 PF14235.6 gi|124028080|ref|YP_001013400.1| - 0.073 13.2 10.0 0.14 12.2 10.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) PaaX PF07848.12 gi|124028080|ref|YP_001013400.1| - 0.081 13.2 0.1 0.22 11.8 0.1 1.7 1 1 0 1 1 1 0 PaaX-like protein DUF4407 PF14362.6 gi|124028080|ref|YP_001013400.1| - 0.084 12.2 6.6 0.12 11.7 6.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TMPIT PF07851.13 gi|124028080|ref|YP_001013400.1| - 0.086 12.1 4.7 0.15 11.3 4.7 1.4 1 0 0 1 1 1 0 TMPIT-like protein HTH_3 PF01381.22 gi|124028080|ref|YP_001013400.1| - 0.09 12.9 0.3 0.09 12.9 0.3 3.8 3 1 1 4 4 2 0 Helix-turn-helix Bac_DnaA_C PF08299.11 gi|124028080|ref|YP_001013400.1| - 0.095 12.7 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial dnaA protein helix-turn-helix FTA4 PF13093.6 gi|124028080|ref|YP_001013400.1| - 0.12 12.3 12.0 0.19 11.6 12.0 1.4 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 ALIX_LYPXL_bnd PF13949.6 gi|124028080|ref|YP_001013400.1| - 0.13 11.5 13.1 0.64 9.3 13.1 1.9 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV HOOK PF05622.12 gi|124028080|ref|YP_001013400.1| - 0.14 10.2 18.7 0.19 9.8 18.2 1.3 1 1 0 1 1 1 0 HOOK protein Baculo_PEP_C PF04513.12 gi|124028080|ref|YP_001013400.1| - 0.15 12.1 0.3 0.35 10.9 0.1 1.7 2 0 0 2 2 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Phage_HK97_TLTM PF06120.11 gi|124028080|ref|YP_001013400.1| - 0.16 11.1 4.5 0.3 10.2 4.5 1.5 1 0 0 1 1 1 0 Tail length tape measure protein Exonuc_VII_L PF02601.15 gi|124028080|ref|YP_001013400.1| - 0.16 11.5 5.9 0.21 11.1 5.9 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit MRP-L28 PF09812.9 gi|124028080|ref|YP_001013400.1| - 0.18 11.9 6.8 0.3 11.2 6.8 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L28 FemAB PF02388.16 gi|124028080|ref|YP_001013400.1| - 0.19 10.6 7.0 0.26 10.1 7.0 1.1 1 0 0 1 1 1 0 FemAB family LMBR1 PF04791.16 gi|124028080|ref|YP_001013400.1| - 0.19 10.6 1.3 0.2 10.5 1.3 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF3347 PF11827.8 gi|124028080|ref|YP_001013400.1| - 0.22 11.7 1.3 0.41 10.8 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) AAA_11 PF13086.6 gi|124028080|ref|YP_001013400.1| - 0.22 11.3 4.5 0.31 10.8 4.5 1.3 1 0 0 1 1 1 0 AAA domain DUF4349 PF14257.6 gi|124028080|ref|YP_001013400.1| - 0.22 10.9 15.2 0.43 10.0 15.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4349) Golgin_A5 PF09787.9 gi|124028080|ref|YP_001013400.1| - 0.23 10.9 17.0 0.36 10.3 16.8 1.5 1 1 0 1 1 1 0 Golgin subfamily A member 5 NPV_P10 PF05531.12 gi|124028080|ref|YP_001013400.1| - 0.24 11.9 1.8 1.1 9.7 1.8 2.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein YabA PF06156.13 gi|124028080|ref|YP_001013400.1| - 0.24 12.0 15.9 0.66 10.6 4.6 2.6 2 1 1 3 3 2 0 Initiation control protein YabA ATG16 PF08614.11 gi|124028080|ref|YP_001013400.1| - 0.24 11.6 18.9 1 9.5 18.9 2.1 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Katanin_con80 PF13925.6 gi|124028080|ref|YP_001013400.1| - 0.26 11.3 5.7 0.42 10.6 1.5 2.3 1 1 1 2 2 2 0 con80 domain of Katanin SOAR PF16533.5 gi|124028080|ref|YP_001013400.1| - 0.27 11.2 7.0 2.3 8.2 7.6 2.0 1 1 1 2 2 2 0 STIM1 Orai1-activating region eIF3_N PF09440.10 gi|124028080|ref|YP_001013400.1| - 0.29 11.6 7.6 6.3 7.3 7.4 2.2 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain Prefoldin PF02996.17 gi|124028080|ref|YP_001013400.1| - 0.29 11.0 13.9 0.98 9.3 8.1 2.4 1 1 1 2 2 2 0 Prefoldin subunit PIN_8 PF18476.1 gi|124028080|ref|YP_001013400.1| - 0.31 10.9 6.1 0.47 10.3 5.5 1.4 1 1 0 1 1 1 0 PIN like domain UPF0242 PF06785.11 gi|124028080|ref|YP_001013400.1| - 0.32 11.1 19.4 0.41 10.7 19.0 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Spc24 PF08286.11 gi|124028080|ref|YP_001013400.1| - 0.33 11.2 14.9 3 8.1 2.6 2.6 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Jnk-SapK_ap_N PF09744.9 gi|124028080|ref|YP_001013400.1| - 0.34 11.1 20.2 0.66 10.2 20.2 1.4 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Sec34 PF04136.15 gi|124028080|ref|YP_001013400.1| - 0.36 10.7 6.3 0.78 9.6 6.3 1.6 1 1 0 1 1 1 0 Sec34-like family Syntaxin_2 PF14523.6 gi|124028080|ref|YP_001013400.1| - 0.37 11.2 7.8 0.15 12.4 2.3 2.4 2 1 1 3 3 2 0 Syntaxin-like protein APG6_N PF17675.1 gi|124028080|ref|YP_001013400.1| - 0.37 11.3 30.3 3.1 8.3 18.3 2.3 1 1 1 2 2 2 0 Apg6 coiled-coil region Nnf1 PF03980.14 gi|124028080|ref|YP_001013400.1| - 0.37 11.2 19.8 1.3 9.5 3.3 3.1 3 0 0 3 3 3 0 Nnf1 MRP-S26 PF14943.6 gi|124028080|ref|YP_001013400.1| - 0.42 10.5 13.9 0.59 10.0 13.9 1.3 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 DUF4047 PF13256.6 gi|124028080|ref|YP_001013400.1| - 0.44 10.7 6.0 0.86 9.8 6.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) FlaC_arch PF05377.11 gi|124028080|ref|YP_001013400.1| - 0.48 10.9 14.9 7.8 7.0 1.2 3.0 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) SlyX PF04102.12 gi|124028080|ref|YP_001013400.1| - 0.55 10.9 15.1 7.2 7.3 1.3 3.2 1 1 1 2 2 2 0 SlyX DUF4208 PF13907.6 gi|124028080|ref|YP_001013400.1| - 0.61 10.6 7.6 5.5 7.5 7.6 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4208) HMMR_N PF15905.5 gi|124028080|ref|YP_001013400.1| - 0.67 9.4 19.5 1.4 8.3 19.5 1.5 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DivIVA PF05103.13 gi|124028080|ref|YP_001013400.1| - 0.71 10.0 18.9 0.14 12.2 6.1 2.7 2 1 1 3 3 2 0 DivIVA protein AATF-Che1 PF13339.6 gi|124028080|ref|YP_001013400.1| - 0.73 10.5 6.9 1.1 9.9 6.7 1.5 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Snapin_Pallidin PF14712.6 gi|124028080|ref|YP_001013400.1| - 0.78 10.2 12.2 4.2 7.9 12.0 2.1 1 1 0 1 1 1 0 Snapin/Pallidin Seryl_tRNA_N PF02403.22 gi|124028080|ref|YP_001013400.1| - 0.78 10.0 14.1 2.3 8.5 13.0 2.3 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain NFACT-C PF11923.8 gi|124028080|ref|YP_001013400.1| - 0.81 9.6 2.7 3.1 7.8 2.7 2.0 1 1 0 1 1 1 0 NFACT protein C-terminal domain Sigma70_ECF PF07638.11 gi|124028080|ref|YP_001013400.1| - 0.92 9.4 9.6 2.3 8.1 0.0 2.4 2 0 0 2 2 2 0 ECF sigma factor DUF3450 PF11932.8 gi|124028080|ref|YP_001013400.1| - 0.96 8.7 11.8 2.4 7.4 11.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) PilJ PF13675.6 gi|124028080|ref|YP_001013400.1| - 1.1 9.3 6.1 2.6 8.1 3.1 2.2 1 1 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DLP_helical PF18709.1 gi|124028080|ref|YP_001013400.1| - 1.1 8.4 11.2 2.7 7.1 1.1 2.4 1 1 1 2 2 2 0 Dynamin-like helical domain DUF4446 PF14584.6 gi|124028080|ref|YP_001013400.1| - 1.1 9.2 7.9 11 6.0 6.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) FlpD PF02662.16 gi|124028080|ref|YP_001013400.1| - 1.2 9.2 3.1 2.6 8.0 3.1 1.6 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit PilO PF04350.13 gi|124028080|ref|YP_001013400.1| - 1.2 9.3 9.5 1.9 8.7 7.6 2.1 1 1 1 2 2 2 0 Pilus assembly protein, PilO Sec8_exocyst PF04048.14 gi|124028080|ref|YP_001013400.1| - 1.4 8.8 6.9 1.3 8.9 2.9 2.3 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Atg14 PF10186.9 gi|124028080|ref|YP_001013400.1| - 1.4 7.9 14.0 2.5 7.1 3.3 1.9 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Fib_alpha PF08702.10 gi|124028080|ref|YP_001013400.1| - 1.4 9.1 6.3 1.1 9.4 1.8 2.3 2 1 1 3 3 2 0 Fibrinogen alpha/beta chain family Prominin PF05478.11 gi|124028080|ref|YP_001013400.1| - 1.4 6.7 4.5 2.7 5.8 4.1 1.5 1 1 0 1 1 1 0 Prominin HDV_ag PF01517.18 gi|124028080|ref|YP_001013400.1| - 1.4 8.6 12.4 0.038 13.8 4.7 2.0 1 1 1 2 2 1 0 Hepatitis delta virus delta antigen TolA_bind_tri PF16331.5 gi|124028080|ref|YP_001013400.1| - 1.5 8.9 16.7 2.7 8.1 8.1 2.4 1 1 1 2 2 2 0 TolA binding protein trimerisation ZapB PF06005.12 gi|124028080|ref|YP_001013400.1| - 1.6 9.2 25.9 14 6.2 14.5 2.6 1 1 1 2 2 2 0 Cell division protein ZapB DUF883 PF05957.13 gi|124028080|ref|YP_001013400.1| - 1.7 9.3 13.1 16 6.1 9.6 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) 5_nucleotid PF05761.14 gi|124028080|ref|YP_001013400.1| - 1.7 7.5 6.6 2.7 6.8 6.6 1.3 1 0 0 1 1 1 0 5' nucleotidase family TEX13 PF15186.6 gi|124028080|ref|YP_001013400.1| - 1.7 8.3 11.8 0.99 9.1 9.3 1.6 1 1 0 2 2 1 0 Testis-expressed sequence 13 protein family Cnn_1N PF07989.11 gi|124028080|ref|YP_001013400.1| - 1.7 8.8 19.2 8.3 6.6 4.6 2.3 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 CENP-H PF05837.12 gi|124028080|ref|YP_001013400.1| - 1.8 9.0 17.3 5.1 7.5 13.6 2.7 1 1 2 3 3 2 0 Centromere protein H (CENP-H) DUF2408 PF10303.9 gi|124028080|ref|YP_001013400.1| - 1.9 9.1 11.9 4.7 7.8 10.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) PI3K_P85_iSH2 PF16454.5 gi|124028080|ref|YP_001013400.1| - 1.9 8.1 16.1 2.8 7.5 14.3 2.0 2 1 0 2 2 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Phage_GP20 PF06810.11 gi|124028080|ref|YP_001013400.1| - 2.1 8.1 12.8 1.4 8.7 7.8 2.2 1 1 1 2 2 2 0 Phage minor structural protein GP20 Csm1_N PF18504.1 gi|124028080|ref|YP_001013400.1| - 2.3 8.6 18.2 5.5 7.4 12.8 2.9 1 1 1 2 2 2 0 Csm1 N-terminal domain DUF2203 PF09969.9 gi|124028080|ref|YP_001013400.1| - 2.4 8.9 11.8 1.2 9.8 8.7 1.9 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) TSC22 PF01166.18 gi|124028080|ref|YP_001013400.1| - 2.7 8.4 23.1 0.21 11.9 4.7 3.3 1 1 1 2 2 1 0 TSC-22/dip/bun family YscO PF07321.12 gi|124028080|ref|YP_001013400.1| - 2.7 7.9 25.4 1.8 8.5 21.6 2.2 2 1 0 2 2 2 0 Type III secretion protein YscO OmpH PF03938.14 gi|124028080|ref|YP_001013400.1| - 2.8 8.3 16.0 4.2 7.7 15.2 1.7 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF2730 PF10805.8 gi|124028080|ref|YP_001013400.1| - 2.9 8.0 8.6 12 6.0 8.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) Nsp1_C PF05064.13 gi|124028080|ref|YP_001013400.1| - 3 7.7 11.2 1.3 8.9 8.0 1.9 1 1 0 1 1 1 0 Nsp1-like C-terminal region PEARLI-4 PF05278.12 gi|124028080|ref|YP_001013400.1| - 3.1 7.3 14.8 5.2 6.6 14.8 1.3 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) Syntaxin-6_N PF09177.11 gi|124028080|ref|YP_001013400.1| - 3.1 8.4 11.1 11 6.7 10.0 2.3 1 1 1 2 2 2 0 Syntaxin 6, N-terminal HIP1_clath_bdg PF16515.5 gi|124028080|ref|YP_001013400.1| - 3.2 8.4 18.6 2.7 8.7 12.7 2.6 2 1 1 3 3 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 TMF_DNA_bd PF12329.8 gi|124028080|ref|YP_001013400.1| - 3.7 7.6 22.4 4.1 7.5 14.5 2.6 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding XhlA PF10779.9 gi|124028080|ref|YP_001013400.1| - 3.9 7.7 17.1 0.085 13.1 4.7 3.1 3 1 0 3 3 2 0 Haemolysin XhlA UPF0184 PF03670.13 gi|124028080|ref|YP_001013400.1| - 4 7.9 11.8 0.31 11.5 3.9 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) Fmp27_WPPW PF10359.9 gi|124028080|ref|YP_001013400.1| - 4.1 6.2 9.7 5.7 5.7 9.7 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain bZIP_1 PF00170.21 gi|124028080|ref|YP_001013400.1| - 4.1 7.6 21.0 6 7.1 9.5 2.7 1 1 1 2 2 2 0 bZIP transcription factor Prefoldin_2 PF01920.20 gi|124028080|ref|YP_001013400.1| - 4.5 7.3 23.5 5.2 7.1 2.8 3.0 2 1 1 3 3 2 0 Prefoldin subunit CBP4 PF07960.11 gi|124028080|ref|YP_001013400.1| - 5 7.0 10.8 15 5.5 0.2 2.4 1 1 1 2 2 2 0 CBP4 COG2 PF06148.11 gi|124028080|ref|YP_001013400.1| - 5 7.2 12.6 9.1 6.4 10.4 2.3 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Swi5 PF07061.11 gi|124028080|ref|YP_001013400.1| - 5.1 7.2 16.0 3.4 7.8 4.5 3.2 2 1 1 3 3 3 0 Swi5 DUF16 PF01519.16 gi|124028080|ref|YP_001013400.1| - 5.8 7.4 10.4 16 6.1 3.6 2.6 1 1 1 2 2 2 0 Protein of unknown function DUF16 Med4 PF10018.9 gi|124028080|ref|YP_001013400.1| - 6 6.5 11.2 13 5.4 10.9 1.7 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 Occludin_ELL PF07303.13 gi|124028080|ref|YP_001013400.1| - 6.2 7.6 10.7 16 6.3 8.5 2.3 2 1 0 2 2 1 0 Occludin homology domain MCU PF04678.13 gi|124028080|ref|YP_001013400.1| - 7.9 6.5 9.8 49 4.0 9.8 2.0 1 1 0 1 1 1 0 Mitochondrial calcium uniporter PCRF PF03462.18 gi|124028080|ref|YP_001013400.1| - 8.2 6.2 13.2 9.3 6.1 12.0 1.6 1 1 0 1 1 1 0 PCRF domain DUF4200 PF13863.6 gi|124028080|ref|YP_001013400.1| - 8.4 6.8 24.3 4.6 7.7 11.2 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) KfrA_N PF11740.8 gi|124028080|ref|YP_001013400.1| - 8.6 7.1 23.8 1.8e+03 -0.4 23.8 3.1 1 1 0 1 1 0 0 Plasmid replication region DNA-binding N-term Tho2 PF11262.8 gi|124028080|ref|YP_001013400.1| - 9 5.4 6.9 15 4.7 6.9 1.3 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 CALCOCO1 PF07888.11 gi|124028082|ref|YP_001013402.1| - 0.1 11.5 0.5 0.12 11.2 0.5 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like HTH_20 PF12840.7 gi|124028083|ref|YP_001013403.1| - 6.6e-05 22.9 0.2 9.5e-05 22.4 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|124028083|ref|YP_001013403.1| - 0.00019 21.3 0.5 0.00047 20.0 0.5 1.7 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|124028083|ref|YP_001013403.1| - 0.00021 21.6 0.0 0.0003 21.1 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 gi|124028083|ref|YP_001013403.1| - 0.0025 17.6 0.3 0.0043 16.9 0.3 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_CC-MB PF16421.5 gi|124028083|ref|YP_001013403.1| - 0.0049 17.2 0.0 0.0067 16.8 0.0 1.2 1 0 0 1 1 1 1 E2F transcription factor CC-MB domain PaaX PF07848.12 gi|124028083|ref|YP_001013403.1| - 0.018 15.3 0.1 0.023 14.9 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein DUF4423 PF14394.6 gi|124028083|ref|YP_001013403.1| - 0.029 14.1 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) GntR PF00392.21 gi|124028083|ref|YP_001013403.1| - 0.067 12.9 0.2 0.13 12.0 0.2 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF3267 PF11667.8 gi|124028084|ref|YP_001013404.1| - 0.00062 20.0 1.3 0.00099 19.4 1.3 1.3 1 0 0 1 1 1 1 Putative zincin peptidase UNC-93 PF05978.16 gi|124028084|ref|YP_001013404.1| - 0.079 12.7 1.4 0.35 10.6 0.2 2.3 1 1 2 3 3 3 0 Ion channel regulatory protein UNC-93 DUF1987 PF09345.10 gi|124028085|ref|YP_001013405.1| - 0.12 12.0 0.0 0.14 11.8 0.0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF1987) NAD_binding_8 PF13450.6 gi|124028086|ref|YP_001013406.1| - 8.2e-06 26.0 0.1 8.2e-06 26.0 0.1 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|124028086|ref|YP_001013406.1| - 2.4e-05 23.8 0.4 4.2e-05 23.0 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|124028086|ref|YP_001013406.1| - 0.0061 16.2 0.1 0.015 14.9 0.1 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|124028086|ref|YP_001013406.1| - 0.014 15.3 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|124028086|ref|YP_001013406.1| - 0.026 13.7 0.0 0.049 12.8 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|124028086|ref|YP_001013406.1| - 0.12 12.0 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|124028086|ref|YP_001013406.1| - 0.13 12.9 0.0 0.3 11.7 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Laminin_II PF06009.12 gi|124028087|ref|YP_001013407.1| - 0.067 13.2 2.2 0.1 12.6 0.8 1.8 2 0 0 2 2 2 0 Laminin Domain II Fib_alpha PF08702.10 gi|124028087|ref|YP_001013407.1| - 0.099 12.8 0.1 0.52 10.5 0.1 1.9 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Adenosine_kin PF04008.14 gi|124028089|ref|YP_001013409.1| - 1.2e-77 259.0 0.2 1.4e-77 258.8 0.2 1.0 1 0 0 1 1 1 1 Adenosine specific kinase zf-C2H2_4 PF13894.6 gi|124028091|ref|YP_001013411.1| - 0.049 14.5 0.3 0.077 13.9 0.3 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger Dioxygenase_N PF04444.14 gi|124028092|ref|YP_001013412.1| - 0.086 12.7 0.2 0.36 10.7 0.0 2.1 2 1 1 3 3 3 0 Catechol dioxygenase N terminus DUF900 PF05990.12 gi|124028092|ref|YP_001013412.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 1 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) MutL_C PF08676.11 gi|124028092|ref|YP_001013412.1| - 0.16 11.8 0.1 0.72 9.6 0.0 1.9 2 0 0 2 2 2 0 MutL C terminal dimerisation domain NMD3 PF04981.13 gi|124028093|ref|YP_001013413.1| - 3.8e-39 134.6 0.0 4.3e-39 134.4 0.0 1.0 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|124028093|ref|YP_001013413.1| - 0.0046 17.2 0.2 5.2 7.4 0.0 3.2 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|124028093|ref|YP_001013413.1| - 0.052 13.6 6.3 6.6 6.8 5.2 3.0 2 1 1 3 3 3 0 Double zinc ribbon C1_1 PF00130.22 gi|124028093|ref|YP_001013413.1| - 0.076 12.9 3.4 0.34 10.8 0.3 2.8 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.6 gi|124028093|ref|YP_001013413.1| - 2.5 7.6 13.1 0.58 9.7 1.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Ring_hydroxyl_B PF00866.18 gi|124028095|ref|YP_001013415.1| - 0.077 13.1 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 Ring hydroxylating beta subunit DUF1848 PF08902.11 gi|124028096|ref|YP_001013416.1| - 2.8e-09 37.1 0.2 0.0067 16.2 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) Radical_SAM PF04055.21 gi|124028096|ref|YP_001013416.1| - 1.6e-08 35.1 0.0 6.1e-08 33.2 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily FXa_inhibition PF14670.6 gi|124028096|ref|YP_001013416.1| - 6.1 7.2 8.7 19 5.6 0.2 3.0 2 1 1 3 3 3 0 Coagulation Factor Xa inhibitory site SIS PF01380.22 gi|124028097|ref|YP_001013417.1| - 1.5e-19 70.1 0.0 2.5e-19 69.4 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|124028097|ref|YP_001013417.1| - 2.8e-11 43.6 2.2 4.5e-07 30.0 0.8 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|124028097|ref|YP_001013417.1| - 0.00046 20.1 1.7 0.66 9.8 0.1 2.2 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase DSPc PF00782.20 gi|124028097|ref|YP_001013417.1| - 0.21 11.4 0.2 0.67 9.8 0.2 1.8 1 1 0 1 1 1 0 Dual specificity phosphatase, catalytic domain tRNA-synt_1 PF00133.22 gi|124028098|ref|YP_001013418.1| - 2.9e-55 187.6 0.0 3.4e-45 154.4 0.0 3.3 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|124028098|ref|YP_001013418.1| - 5.6e-24 84.8 0.1 1.3e-23 83.6 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|124028098|ref|YP_001013418.1| - 1.9e-20 73.0 0.0 2.7e-09 36.3 0.0 3.4 2 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|124028098|ref|YP_001013418.1| - 9.7e-13 48.1 0.0 2.9e-08 33.4 0.0 2.8 2 1 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|124028098|ref|YP_001013418.1| - 1.7e-10 40.7 0.0 3.2e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 HTH_28 PF13518.6 gi|124028098|ref|YP_001013418.1| - 0.0053 16.9 1.7 0.019 15.1 1.7 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|124028098|ref|YP_001013418.1| - 0.0058 16.4 1.5 0.025 14.3 1.5 2.2 1 0 0 1 1 1 1 Homeodomain-like domain CMS1 PF14617.6 gi|124028099|ref|YP_001013419.1| - 0.14 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit Metallophos PF00149.28 gi|124028100|ref|YP_001013420.1| - 4.4e-12 46.9 0.0 5.3e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|124028100|ref|YP_001013420.1| - 5.1e-08 33.3 0.1 3.6e-07 30.5 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|124028100|ref|YP_001013420.1| - 0.0073 15.7 0.1 0.11 11.8 0.0 2.0 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily FAM35_C PF15793.5 gi|124028100|ref|YP_001013420.1| - 0.065 12.6 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein family FAM35, C-terminal TatD_DNase PF01026.21 gi|124028101|ref|YP_001013421.1| - 6.1e-42 143.8 0.0 7.3e-42 143.5 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase bacHORMA_2 PF18173.1 gi|124028101|ref|YP_001013421.1| - 0.038 13.8 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial HORMA domain 2 Radical_SAM PF04055.21 gi|124028102|ref|YP_001013422.1| - 8e-24 84.9 0.0 8e-24 84.9 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|124028102|ref|YP_001013422.1| - 5.5e-07 29.7 0.5 2.8e-06 27.4 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|124028102|ref|YP_001013422.1| - 4.7e-06 26.9 0.5 1.1e-05 25.7 0.0 1.8 1 1 1 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|124028103|ref|YP_001013423.1| - 1e-14 55.3 0.0 2.4e-14 54.1 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|124028103|ref|YP_001013423.1| - 0.02 15.1 0.0 0.043 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif Radical_SAM PF04055.21 gi|124028104|ref|YP_001013424.1| - 9.7e-12 45.6 0.1 2.3e-11 44.4 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|124028104|ref|YP_001013424.1| - 3.2e-06 27.4 0.0 5.6e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|124028104|ref|YP_001013424.1| - 0.0017 18.5 0.0 0.0035 17.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Com_YlbF PF06133.11 gi|124028105|ref|YP_001013425.1| - 0.057 14.0 0.2 0.067 13.8 0.2 1.2 1 0 0 1 1 1 0 Control of competence regulator ComK, YlbF/YmcA Rnk_N PF14760.6 gi|124028105|ref|YP_001013425.1| - 0.071 13.6 0.3 6 7.4 0.0 2.3 2 0 0 2 2 2 0 Rnk N-terminus tRNA-synt_2b PF00587.25 gi|124028106|ref|YP_001013426.1| - 1.2e-39 136.1 0.0 3.3e-39 134.7 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|124028106|ref|YP_001013426.1| - 7.7e-22 77.6 7.5 1.6e-21 76.5 7.5 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain FapA PF03961.13 gi|124028106|ref|YP_001013426.1| - 0.0021 16.7 0.9 0.0038 15.9 0.9 1.3 1 0 0 1 1 1 1 Flagellar Assembly Protein A COG6 PF06419.11 gi|124028106|ref|YP_001013426.1| - 0.0031 15.8 1.2 0.0045 15.3 1.2 1.1 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 APG6_N PF17675.1 gi|124028106|ref|YP_001013426.1| - 0.0069 16.9 5.9 0.015 15.9 5.9 1.5 1 0 0 1 1 1 1 Apg6 coiled-coil region PCRF PF03462.18 gi|124028106|ref|YP_001013426.1| - 0.023 14.5 1.5 0.055 13.3 1.5 1.5 1 0 0 1 1 1 0 PCRF domain GAS PF13851.6 gi|124028106|ref|YP_001013426.1| - 0.1 11.9 4.9 0.17 11.2 4.9 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Atg14 PF10186.9 gi|124028106|ref|YP_001013426.1| - 0.24 10.4 1.8 0.43 9.6 1.8 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CCDC-167 PF15188.6 gi|124028106|ref|YP_001013426.1| - 0.81 10.1 9.7 1.6 9.1 9.7 1.5 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 DUF5401 PF17380.2 gi|124028106|ref|YP_001013426.1| - 2.1 6.4 14.1 2.9 5.9 14.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5401) zf-C4H2 PF10146.9 gi|124028106|ref|YP_001013426.1| - 5.4 7.3 6.4 3.5 7.9 0.3 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein FeS_assembly_P PF01883.19 gi|124028107|ref|YP_001013427.1| - 1.5e-20 73.2 0.9 1.9e-20 72.8 0.9 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein NifU PF01106.17 gi|124028107|ref|YP_001013427.1| - 0.022 14.9 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 NifU-like domain MoCF_biosynth PF00994.24 gi|124028108|ref|YP_001013428.1| - 1.4e-36 125.3 0.0 2e-36 124.8 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain CinA_KH PF18146.1 gi|124028108|ref|YP_001013428.1| - 0.034 14.3 0.2 0.16 12.2 0.2 2.0 1 1 0 1 1 1 0 Damage-inducible protein CinA KH domain SHMT PF00464.19 gi|124028109|ref|YP_001013429.1| - 1e-69 235.1 0.1 1.3e-69 234.8 0.1 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|124028109|ref|YP_001013429.1| - 1.8e-10 40.6 0.1 2.5e-10 40.1 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|124028109|ref|YP_001013429.1| - 2.6e-08 33.5 0.0 5.6e-08 32.4 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|124028109|ref|YP_001013429.1| - 9.9e-06 24.7 0.0 1.8e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|124028109|ref|YP_001013429.1| - 5.8e-05 22.6 0.2 8.9e-05 21.9 0.2 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|124028109|ref|YP_001013429.1| - 0.00013 20.7 0.0 0.00045 18.9 0.0 1.7 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme XTBD PF11952.8 gi|124028109|ref|YP_001013429.1| - 0.0066 16.2 0.2 0.15 11.8 0.0 2.4 2 0 0 2 2 2 1 XRN-Two Binding Domain, XTBD CheD PF03975.13 gi|124028109|ref|YP_001013429.1| - 0.075 13.1 0.0 0.26 11.4 0.0 1.9 1 0 0 1 1 1 0 CheD chemotactic sensory transduction SelA PF03841.13 gi|124028109|ref|YP_001013429.1| - 0.11 11.5 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase Thioredoxin_3 PF13192.6 gi|124028111|ref|YP_001013431.1| - 0.00082 19.4 1.0 0.0016 18.5 0.2 1.8 2 1 0 2 2 2 1 Thioredoxin domain PfkB PF00294.24 gi|124028112|ref|YP_001013432.1| - 3.6e-06 26.5 0.6 5.3e-06 26.0 0.6 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase zf-C2H2 PF00096.26 gi|124028113|ref|YP_001013433.1| - 0.16 12.5 0.0 0.27 11.8 0.0 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type FAD_binding_3 PF01494.19 gi|124028114|ref|YP_001013434.1| - 6.1e-06 25.7 0.0 0.28 10.4 0.0 3.1 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|124028114|ref|YP_001013434.1| - 1.4e-05 24.9 0.3 0.012 15.3 0.0 2.5 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|124028114|ref|YP_001013434.1| - 0.00011 21.7 0.0 0.13 11.6 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|124028114|ref|YP_001013434.1| - 0.00083 18.5 0.0 0.0014 17.8 0.0 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|124028114|ref|YP_001013434.1| - 0.0014 17.6 0.0 0.048 12.5 0.0 2.7 2 1 0 2 2 2 1 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|124028114|ref|YP_001013434.1| - 0.017 14.4 0.0 0.042 13.1 0.0 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|124028114|ref|YP_001013434.1| - 0.028 13.5 0.0 1.4 7.9 0.0 2.3 2 0 0 2 2 2 0 FAD binding domain ThiF PF00899.21 gi|124028114|ref|YP_001013434.1| - 0.11 11.9 0.1 0.19 11.0 0.1 1.3 1 0 0 1 1 1 0 ThiF family SE PF08491.10 gi|124028114|ref|YP_001013434.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Squalene epoxidase ArsA_HSP20 PF17886.1 gi|124028115|ref|YP_001013435.1| - 5.5e-14 51.5 0.3 8.6e-14 50.8 0.3 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|124028115|ref|YP_001013435.1| - 2e-13 50.3 4.7 3.7e-12 46.3 4.7 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|124028115|ref|YP_001013435.1| - 0.0004 20.5 0.0 0.00049 20.2 0.0 1.3 1 0 0 1 1 1 1 GvpH CS PF04969.16 gi|124028115|ref|YP_001013435.1| - 0.00063 20.7 1.4 0.00098 20.1 1.4 1.3 1 0 0 1 1 1 1 CS domain FKBP26_C PF18046.1 gi|124028115|ref|YP_001013435.1| - 0.23 11.6 10.1 0.093 12.8 2.0 2.8 2 1 1 3 3 3 0 FKBP26_C-terminal zf-ZPR1 PF03367.13 gi|124028116|ref|YP_001013436.1| - 3.9e-33 114.6 0.0 4.6e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Zn-ribbon_8 PF09723.10 gi|124028116|ref|YP_001013436.1| - 0.018 15.2 3.0 3.9 7.7 0.1 2.8 3 0 0 3 3 3 0 Zinc ribbon domain Porphobil_deamC PF03900.15 gi|124028116|ref|YP_001013436.1| - 0.024 15.0 0.1 0.074 13.4 0.1 1.8 1 1 0 1 1 1 0 Porphobilinogen deaminase, C-terminal domain zf-H2C2_2 PF13465.6 gi|124028116|ref|YP_001013436.1| - 0.033 14.6 0.6 6.7 7.3 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger double domain IBR PF01485.21 gi|124028116|ref|YP_001013436.1| - 0.1 12.8 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain DUF2790 PF10976.8 gi|124028116|ref|YP_001013436.1| - 0.17 11.9 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2790) RHH_1 PF01402.21 gi|124028117|ref|YP_001013437.1| - 2e-09 37.1 0.2 4.7e-09 35.9 0.2 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family TrmB PF01978.19 gi|124028118|ref|YP_001013438.1| - 3.8e-13 49.1 0.1 5.1e-13 48.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|124028118|ref|YP_001013438.1| - 6.5e-09 35.5 0.0 1.2e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|124028118|ref|YP_001013438.1| - 2.2e-08 33.8 0.0 3.4e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|124028118|ref|YP_001013438.1| - 5e-08 32.4 0.5 1.4e-07 31.0 0.0 2.0 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|124028118|ref|YP_001013438.1| - 1e-07 31.8 0.1 1.1e-06 28.4 0.1 2.1 2 1 0 2 2 2 1 MarR family TFIIE_alpha PF02002.17 gi|124028118|ref|YP_001013438.1| - 3.2e-07 30.1 0.0 5e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_DeoR PF08220.12 gi|124028118|ref|YP_001013438.1| - 1.4e-05 24.7 0.4 4e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|124028118|ref|YP_001013438.1| - 4.5e-05 23.9 0.0 0.00025 21.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|124028118|ref|YP_001013438.1| - 0.00027 20.9 0.0 0.00059 19.8 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|124028118|ref|YP_001013438.1| - 0.00054 19.9 0.0 0.001 18.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|124028118|ref|YP_001013438.1| - 0.00073 19.7 0.1 0.0032 17.6 0.1 2.1 2 1 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|124028118|ref|YP_001013438.1| - 0.00082 19.1 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4423 PF14394.6 gi|124028118|ref|YP_001013438.1| - 0.0037 17.0 0.0 0.0073 16.0 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_11 PF08279.12 gi|124028118|ref|YP_001013438.1| - 0.005 16.7 0.8 0.03 14.3 0.1 2.1 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 gi|124028118|ref|YP_001013438.1| - 0.01 15.6 0.0 0.023 14.5 0.0 1.6 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain PadR PF03551.14 gi|124028118|ref|YP_001013438.1| - 0.011 15.7 0.1 0.026 14.5 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.6 gi|124028118|ref|YP_001013438.1| - 0.013 15.5 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF717 PF05338.12 gi|124028118|ref|YP_001013438.1| - 0.019 15.1 0.0 0.056 13.6 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF717) HTH_9 PF08221.11 gi|124028118|ref|YP_001013438.1| - 0.022 14.8 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain GntR PF00392.21 gi|124028118|ref|YP_001013438.1| - 0.025 14.2 0.0 0.044 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_7 PF02796.15 gi|124028118|ref|YP_001013438.1| - 0.038 14.1 0.0 0.087 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase RuvB_C PF05491.13 gi|124028118|ref|YP_001013438.1| - 0.04 13.8 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain ATPgrasp_Ter PF15632.6 gi|124028118|ref|YP_001013438.1| - 0.046 13.5 0.0 0.062 13.0 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon HxlR PF01638.17 gi|124028118|ref|YP_001013438.1| - 0.048 13.5 0.0 0.08 12.8 0.0 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix RP-C PF03428.13 gi|124028118|ref|YP_001013438.1| - 0.049 13.3 0.1 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 Replication protein C N-terminal domain Rio2_N PF09202.11 gi|124028118|ref|YP_001013438.1| - 0.059 13.6 0.1 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 Rio2, N-terminal HTH_29 PF13551.6 gi|124028118|ref|YP_001013438.1| - 0.096 12.7 0.0 0.25 11.4 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix Penicillinase_R PF03965.16 gi|124028118|ref|YP_001013438.1| - 0.11 12.8 0.1 0.18 12.2 0.1 1.6 1 1 0 1 1 1 0 Penicillinase repressor Replic_Relax PF13814.6 gi|124028118|ref|YP_001013438.1| - 0.11 12.5 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Rrf2 PF02082.20 gi|124028118|ref|YP_001013438.1| - 0.12 12.8 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator GPP34 PF05719.11 gi|124028118|ref|YP_001013438.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.4 1 1 0 2 2 1 0 Golgi phosphoprotein 3 (GPP34) SpoIIM PF01944.17 gi|124028119|ref|YP_001013439.1| - 1.5e-20 73.8 12.3 1.8e-20 73.6 12.3 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M DUF3693 PF12472.8 gi|124028119|ref|YP_001013439.1| - 0.044 13.4 5.5 2.7 7.7 0.5 2.6 2 0 0 2 2 2 0 Phage related protein TatD_DNase PF01026.21 gi|124028120|ref|YP_001013440.1| - 1.8e-19 70.1 0.0 2.2e-19 69.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase TruD PF01142.18 gi|124028120|ref|YP_001013440.1| - 0.13 11.1 0.0 0.2 10.5 0.0 1.1 1 0 0 1 1 1 0 tRNA pseudouridine synthase D (TruD) VWA_2 PF13519.6 gi|124028121|ref|YP_001013441.1| - 2.6e-07 31.2 0.3 1e-05 26.1 0.0 2.8 2 1 1 3 3 3 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|124028121|ref|YP_001013441.1| - 2.9e-07 30.1 0.0 7.9e-07 28.7 0.0 1.7 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|124028121|ref|YP_001013441.1| - 1.5e-06 28.3 0.1 1.7e-05 24.8 0.0 2.4 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|124028121|ref|YP_001013441.1| - 1.6e-06 28.5 0.4 0.00021 21.6 0.0 2.3 2 0 0 2 2 2 2 von Willebrand factor type A domain CobT_C PF11775.8 gi|124028121|ref|YP_001013441.1| - 0.03 14.0 0.1 0.54 9.9 0.0 2.4 2 0 0 2 2 2 0 Cobalamin biosynthesis protein CobT VWA domain UCH_N PF16674.5 gi|124028121|ref|YP_001013441.1| - 0.11 12.4 0.0 23 5.0 0.0 2.4 2 0 0 2 2 2 0 N-terminal of ubiquitin carboxyl-terminal hydrolase 37 AAA_5 PF07728.14 gi|124028122|ref|YP_001013442.1| - 5.2e-28 97.8 0.0 1.2e-27 96.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|124028122|ref|YP_001013442.1| - 1.7e-08 34.4 0.0 3e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_8 PF17868.1 gi|124028122|ref|YP_001013442.1| - 1.2e-06 28.3 0.1 3e-06 27.0 0.1 1.7 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|124028122|ref|YP_001013442.1| - 1.2e-05 25.7 0.0 4.2e-05 24.0 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|124028122|ref|YP_001013442.1| - 3.3e-05 23.4 0.0 0.00066 19.1 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|124028122|ref|YP_001013442.1| - 0.00013 22.5 0.4 0.00056 20.3 0.1 2.2 1 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|124028122|ref|YP_001013442.1| - 0.00087 19.0 0.0 0.0023 17.6 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|124028122|ref|YP_001013442.1| - 0.0047 16.1 0.0 0.0089 15.1 0.0 1.6 1 0 0 1 1 1 1 MCM P-loop domain AAA_22 PF13401.6 gi|124028122|ref|YP_001013442.1| - 0.0062 16.8 0.0 0.026 14.8 0.0 2.1 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|124028122|ref|YP_001013442.1| - 0.03 14.1 0.1 0.26 11.0 0.1 2.5 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|124028122|ref|YP_001013442.1| - 0.045 13.3 0.0 0.1 12.1 0.0 1.7 2 1 0 2 2 2 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|124028122|ref|YP_001013442.1| - 0.16 11.6 0.6 0.7 9.6 0.1 2.2 2 1 0 2 2 2 0 AAA domain MarC PF01914.17 gi|124028124|ref|YP_001013444.1| - 2.3e-42 144.7 14.5 2.6e-42 144.5 14.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein YcaO PF02624.16 gi|124028125|ref|YP_001013445.1| - 0.13 11.5 0.1 0.74 9.0 0.0 1.8 1 1 1 2 2 2 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding Baculo_PEP_C PF04513.12 gi|124028127|ref|YP_001013447.1| - 0.00062 19.8 0.0 0.00074 19.6 0.0 1.1 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Allexi_40kDa PF05549.11 gi|124028127|ref|YP_001013447.1| - 0.0062 16.1 4.2 0.0074 15.8 4.2 1.0 1 0 0 1 1 1 1 Allexivirus 40kDa protein EzrA PF06160.12 gi|124028127|ref|YP_001013447.1| - 0.007 14.6 2.2 0.0084 14.3 2.2 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA XhlA PF10779.9 gi|124028127|ref|YP_001013447.1| - 0.017 15.4 0.7 0.031 14.5 0.1 1.8 2 0 0 2 2 2 0 Haemolysin XhlA COG5 PF10392.9 gi|124028127|ref|YP_001013447.1| - 0.018 15.2 2.8 0.022 15.0 2.8 1.3 1 1 0 1 1 1 0 Golgi transport complex subunit 5 DUF241 PF03087.14 gi|124028127|ref|YP_001013447.1| - 0.022 14.6 0.3 0.031 14.1 0.3 1.2 1 0 0 1 1 1 0 Arabidopsis protein of unknown function DUF1664 PF07889.12 gi|124028127|ref|YP_001013447.1| - 0.03 14.4 0.8 0.042 13.9 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) LMBR1 PF04791.16 gi|124028127|ref|YP_001013447.1| - 0.033 13.1 0.9 0.037 13.0 0.9 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF2730 PF10805.8 gi|124028127|ref|YP_001013447.1| - 0.047 13.8 3.2 0.093 12.8 3.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) TMF_DNA_bd PF12329.8 gi|124028127|ref|YP_001013447.1| - 0.05 13.6 1.1 0.097 12.7 1.1 1.6 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF2680 PF10925.8 gi|124028127|ref|YP_001013447.1| - 0.053 13.5 0.4 0.27 11.2 0.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2680) Spc7 PF08317.11 gi|124028127|ref|YP_001013447.1| - 0.056 12.3 1.8 0.062 12.2 1.8 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein Shugoshin_N PF07558.11 gi|124028127|ref|YP_001013447.1| - 0.07 13.0 0.3 0.18 11.7 0.3 1.7 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region DUF4525 PF15027.6 gi|124028127|ref|YP_001013447.1| - 0.073 12.8 0.2 0.2 11.4 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4525) MAP65_ASE1 PF03999.12 gi|124028127|ref|YP_001013447.1| - 0.09 11.5 2.6 0.096 11.4 2.6 1.0 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) FlaC_arch PF05377.11 gi|124028127|ref|YP_001013447.1| - 0.093 13.1 3.6 0.26 11.7 0.4 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Spc29 PF17082.5 gi|124028127|ref|YP_001013447.1| - 0.11 12.3 0.7 0.12 12.2 0.7 1.1 1 0 0 1 1 1 0 Spindle Pole Component 29 HSBP1 PF06825.12 gi|124028127|ref|YP_001013447.1| - 0.24 11.3 3.6 0.19 11.6 0.9 2.2 2 1 0 2 2 2 0 Heat shock factor binding protein 1 HMMR_N PF15905.5 gi|124028127|ref|YP_001013447.1| - 0.3 10.5 3.8 0.38 10.2 3.8 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal NTP_transf_2 PF01909.23 gi|124028128|ref|YP_001013448.1| - 0.01 16.1 0.1 0.24 11.7 0.0 2.3 2 0 0 2 2 2 0 Nucleotidyltransferase domain Polbeta PF18765.1 gi|124028128|ref|YP_001013448.1| - 0.039 14.0 0.0 0.15 12.2 0.0 1.9 2 1 1 3 3 3 0 Polymerase beta, Nucleotidyltransferase DNA_pol_B PF00136.21 gi|124028129|ref|YP_001013449.1| - 9.7e-54 182.8 0.0 1.9e-53 181.8 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|124028129|ref|YP_001013449.1| - 2.1e-31 109.3 0.0 9.4e-31 107.2 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|124028129|ref|YP_001013449.1| - 1.5e-06 28.3 0.0 5e-06 26.6 0.0 1.9 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|124028129|ref|YP_001013449.1| - 0.00025 20.8 0.0 0.00063 19.5 0.0 1.6 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB ComX PF05952.12 gi|124028129|ref|YP_001013449.1| - 0.11 12.5 0.2 2.9 7.9 0.0 3.0 2 0 0 2 2 2 0 Bacillus competence pheromone ComX DUF2286 PF10051.9 gi|124028130|ref|YP_001013450.1| - 1.1e-56 190.5 2.6 1.7e-56 189.8 2.6 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Methyltransf_25 PF13649.6 gi|124028131|ref|YP_001013451.1| - 4.1e-07 30.6 0.0 5.8e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|124028131|ref|YP_001013451.1| - 4.6e-07 29.6 0.0 0.00019 21.0 0.0 2.3 1 1 1 2 2 2 2 Histone methylation protein DOT1 Methyltransf_18 PF12847.7 gi|124028131|ref|YP_001013451.1| - 2.6e-06 27.4 0.0 3.7e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|124028131|ref|YP_001013451.1| - 8.8e-06 25.6 0.0 1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|124028131|ref|YP_001013451.1| - 2.3e-05 23.9 0.1 3e-05 23.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|124028131|ref|YP_001013451.1| - 5.5e-05 23.7 0.0 7.4e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|124028131|ref|YP_001013451.1| - 0.00013 21.7 1.2 0.0069 16.1 1.2 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|124028131|ref|YP_001013451.1| - 0.0052 16.3 0.0 0.0071 15.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|124028131|ref|YP_001013451.1| - 0.0081 15.8 0.0 0.0091 15.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|124028131|ref|YP_001013451.1| - 0.0094 15.4 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 gi|124028131|ref|YP_001013451.1| - 0.04 13.2 0.0 0.047 13.0 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|124028131|ref|YP_001013451.1| - 0.12 12.4 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Penicillinase_R PF03965.16 gi|124028132|ref|YP_001013452.1| - 0.054 13.9 0.0 0.069 13.5 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor T2SSE PF00437.20 gi|124028133|ref|YP_001013453.1| - 6.8e-11 41.7 0.0 1.4e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|124028133|ref|YP_001013453.1| - 3.2e-06 27.7 0.2 1.2e-05 25.8 0.0 2.1 2 0 0 2 2 1 1 PIN domain AAA_18 PF13238.6 gi|124028133|ref|YP_001013453.1| - 0.00018 22.0 0.3 0.0018 18.9 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|124028133|ref|YP_001013453.1| - 0.00023 21.6 0.0 0.00061 20.2 0.0 1.7 2 0 0 2 2 1 1 AAA ATPase domain DnaB_C PF03796.15 gi|124028133|ref|YP_001013453.1| - 0.00059 19.3 0.1 0.003 16.9 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain RuvB_N PF05496.12 gi|124028133|ref|YP_001013453.1| - 0.0027 17.5 0.0 0.0066 16.2 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|124028133|ref|YP_001013453.1| - 0.0029 17.4 0.0 0.0099 15.6 0.0 1.8 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|124028133|ref|YP_001013453.1| - 0.0034 17.0 0.2 0.018 14.6 0.0 2.1 3 0 0 3 3 2 1 AAA domain AAA PF00004.29 gi|124028133|ref|YP_001013453.1| - 0.0043 17.5 0.2 0.014 15.8 0.0 2.0 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|124028133|ref|YP_001013453.1| - 0.0063 16.5 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|124028133|ref|YP_001013453.1| - 0.0082 16.1 0.1 0.015 15.2 0.1 1.4 1 0 0 1 1 1 1 NACHT domain NTPase_1 PF03266.15 gi|124028133|ref|YP_001013453.1| - 0.0091 15.9 0.0 0.039 13.9 0.0 2.1 2 0 0 2 2 1 1 NTPase AAA_28 PF13521.6 gi|124028133|ref|YP_001013453.1| - 0.011 15.9 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|124028133|ref|YP_001013453.1| - 0.017 15.1 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|124028133|ref|YP_001013453.1| - 0.017 14.8 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|124028133|ref|YP_001013453.1| - 0.021 14.1 0.1 0.042 13.1 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|124028133|ref|YP_001013453.1| - 0.023 14.7 0.0 0.06 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|124028133|ref|YP_001013453.1| - 0.029 13.4 0.0 0.051 12.5 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|124028133|ref|YP_001013453.1| - 0.037 14.3 0.0 0.16 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|124028133|ref|YP_001013453.1| - 0.04 13.7 0.1 0.074 12.8 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|124028133|ref|YP_001013453.1| - 0.045 13.2 0.0 0.092 12.2 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.17 gi|124028133|ref|YP_001013453.1| - 0.048 13.3 0.1 0.17 11.5 0.0 2.0 1 1 1 2 2 2 0 Thymidylate kinase AAA_33 PF13671.6 gi|124028133|ref|YP_001013453.1| - 0.05 13.8 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|124028133|ref|YP_001013453.1| - 0.066 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|124028133|ref|YP_001013453.1| - 0.07 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|124028133|ref|YP_001013453.1| - 0.078 12.7 0.2 0.19 11.4 0.1 1.7 2 0 0 2 2 1 0 AAA domain DUF815 PF05673.13 gi|124028133|ref|YP_001013453.1| - 0.08 12.1 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|124028133|ref|YP_001013453.1| - 0.082 13.3 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase FKBP26_C PF18046.1 gi|124028133|ref|YP_001013453.1| - 0.11 12.6 0.4 0.4 10.8 0.4 2.0 1 0 0 1 1 1 0 FKBP26_C-terminal ABC_tran PF00005.27 gi|124028133|ref|YP_001013453.1| - 0.12 12.9 0.0 0.29 11.7 0.0 1.7 1 0 0 1 1 1 0 ABC transporter FtsK_SpoIIIE PF01580.18 gi|124028133|ref|YP_001013453.1| - 0.12 11.7 0.0 0.34 10.2 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family CbiA PF01656.23 gi|124028133|ref|YP_001013453.1| - 0.13 12.3 0.0 0.78 9.8 0.0 2.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Hjc PF01870.18 gi|124028134|ref|YP_001013454.1| - 1.9e-28 98.3 0.1 4.1e-28 97.2 0.1 1.5 2 0 0 2 2 2 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|124028134|ref|YP_001013454.1| - 0.028 14.9 0.0 0.037 14.5 0.0 1.3 1 0 0 1 1 1 0 Nuclease-related domain AHJR-like PF18743.1 gi|124028134|ref|YP_001013454.1| - 0.091 12.3 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 REase_AHJR-like UPF0102 PF02021.17 gi|124028134|ref|YP_001013454.1| - 0.1 12.8 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 ResIII PF04851.15 gi|124028136|ref|YP_001013456.1| - 2e-24 86.5 0.0 3.9e-24 85.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|124028136|ref|YP_001013456.1| - 3.9e-19 68.8 0.9 6.9e-18 64.8 0.0 2.5 2 1 1 3 3 3 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|124028136|ref|YP_001013456.1| - 4.3e-15 56.0 0.1 2.2e-14 53.7 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|124028136|ref|YP_001013456.1| - 6.6e-10 39.0 0.0 2.5e-09 37.1 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|124028136|ref|YP_001013456.1| - 1.4e-07 30.6 0.0 3.5e-07 29.3 0.0 1.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|124028136|ref|YP_001013456.1| - 9.4e-05 22.7 0.0 0.00047 20.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|124028136|ref|YP_001013456.1| - 0.048 12.7 0.1 0.87 8.6 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein ParA PF10609.9 gi|124028139|ref|YP_001013459.1| - 3.3e-92 308.4 0.0 3.9e-92 308.2 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|124028139|ref|YP_001013459.1| - 5.2e-14 52.4 0.0 6.6e-13 48.8 0.0 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|124028139|ref|YP_001013459.1| - 1.2e-07 31.5 0.1 0.00017 21.2 0.1 2.4 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|124028139|ref|YP_001013459.1| - 1.5e-07 31.5 0.6 1e-05 25.5 0.1 2.3 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|124028139|ref|YP_001013459.1| - 1.2e-06 28.0 0.5 3.7e-05 23.1 0.3 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|124028139|ref|YP_001013459.1| - 0.0001 21.7 0.0 0.00022 20.6 0.0 1.5 2 0 0 2 2 2 1 ATPase MipZ AAA_25 PF13481.6 gi|124028139|ref|YP_001013459.1| - 0.0014 18.2 0.0 0.0024 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|124028139|ref|YP_001013459.1| - 0.011 15.2 0.1 0.078 12.5 0.1 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ MeaB PF03308.16 gi|124028139|ref|YP_001013459.1| - 0.024 13.6 0.1 0.041 12.9 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_26 PF13500.6 gi|124028139|ref|YP_001013459.1| - 0.058 13.2 0.7 7 6.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|124028139|ref|YP_001013459.1| - 0.061 13.2 0.0 0.097 12.6 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase PhoH PF02562.16 gi|124028139|ref|YP_001013459.1| - 0.1 12.0 0.2 0.19 11.2 0.2 1.3 1 0 0 1 1 1 0 PhoH-like protein VirC1 PF07015.11 gi|124028139|ref|YP_001013459.1| - 0.21 10.9 0.0 0.35 10.1 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein ACT_4 PF13291.6 gi|124028140|ref|YP_001013460.1| - 0.0019 18.8 0.1 0.003 18.1 0.1 1.3 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|124028140|ref|YP_001013460.1| - 0.0025 17.6 0.1 0.0072 16.1 0.1 2.0 1 1 0 1 1 1 1 ACT domain MazE_antitoxin PF04014.18 gi|124028140|ref|YP_001013460.1| - 0.0052 16.7 0.5 0.0091 15.9 0.5 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|124028140|ref|YP_001013460.1| - 0.019 14.9 0.0 0.044 13.8 0.0 1.6 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like PCNA_N PF00705.18 gi|124028141|ref|YP_001013461.1| - 8.5e-10 38.4 0.2 3.2e-09 36.6 0.0 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|124028141|ref|YP_001013461.1| - 1.4e-06 28.5 0.2 3.4e-05 24.0 0.0 2.7 2 2 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.12 gi|124028141|ref|YP_001013461.1| - 0.0019 17.4 0.1 0.0026 16.9 0.1 1.4 1 1 0 1 1 1 1 Hus1-like protein Rad9 PF04139.13 gi|124028141|ref|YP_001013461.1| - 0.0053 16.2 0.1 0.0082 15.6 0.1 1.3 1 0 0 1 1 1 1 Rad9 Ribonuc_2-5A PF06479.12 gi|124028142|ref|YP_001013462.1| - 0.0069 16.6 0.3 0.01 16.0 0.3 1.2 1 0 0 1 1 1 1 Ribonuclease 2-5A Avl9 PF09794.9 gi|124028142|ref|YP_001013462.1| - 0.13 10.9 0.2 0.16 10.6 0.2 1.1 1 0 0 1 1 1 0 Transport protein Avl9 RNA_pol_Rpo13 PF12136.8 gi|124028143|ref|YP_001013463.1| - 7.1e-17 61.1 7.4 7.1e-17 61.1 7.4 2.2 1 1 0 2 2 2 1 RNA polymerase Rpo13 subunit HTH domain DUF2089 PF09862.9 gi|124028143|ref|YP_001013463.1| - 0.033 14.2 1.1 0.091 12.8 1.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) DUF87 PF01935.17 gi|124028144|ref|YP_001013464.1| - 9.8e-19 68.3 0.0 1.7e-18 67.5 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|124028144|ref|YP_001013464.1| - 3.5e-06 26.2 0.0 2.2e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|124028144|ref|YP_001013464.1| - 3.9e-06 26.0 0.0 0.038 12.9 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain Zot PF05707.12 gi|124028144|ref|YP_001013464.1| - 7.9e-05 22.4 0.0 0.0017 18.0 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DUF853 PF05872.12 gi|124028144|ref|YP_001013464.1| - 0.00015 20.6 0.1 0.02 13.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) MeaB PF03308.16 gi|124028144|ref|YP_001013464.1| - 0.00015 20.8 0.0 0.00032 19.8 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB T2SSE PF00437.20 gi|124028144|ref|YP_001013464.1| - 0.00018 20.7 0.0 0.00034 19.8 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|124028144|ref|YP_001013464.1| - 0.00024 21.4 0.0 0.044 14.0 0.0 2.6 2 1 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|124028144|ref|YP_001013464.1| - 0.00027 20.4 0.0 0.19 11.0 0.0 2.2 2 0 0 2 2 2 2 KaiC FtsK_SpoIIIE PF01580.18 gi|124028144|ref|YP_001013464.1| - 0.00031 20.2 0.2 0.0038 16.6 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family ResIII PF04851.15 gi|124028144|ref|YP_001013464.1| - 0.00082 19.4 0.0 0.17 11.9 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|124028144|ref|YP_001013464.1| - 0.00083 19.2 0.0 0.2 11.4 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|124028144|ref|YP_001013464.1| - 0.0029 17.3 0.0 0.063 13.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|124028144|ref|YP_001013464.1| - 0.0048 17.3 0.1 0.043 14.2 0.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 gi|124028144|ref|YP_001013464.1| - 0.0057 16.3 0.1 0.01 15.4 0.1 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|124028144|ref|YP_001013464.1| - 0.0081 16.1 0.0 0.021 14.7 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|124028144|ref|YP_001013464.1| - 0.012 16.1 0.0 5.6 7.4 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|124028144|ref|YP_001013464.1| - 0.013 14.7 0.0 0.18 11.0 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|124028144|ref|YP_001013464.1| - 0.024 13.9 0.0 0.043 13.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ATP_bind_1 PF03029.17 gi|124028144|ref|YP_001013464.1| - 0.034 13.9 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|124028144|ref|YP_001013464.1| - 0.11 12.6 0.0 0.38 10.9 0.0 2.0 2 0 0 2 2 1 0 AAA domain T4SS-DNA_transf PF02534.14 gi|124028144|ref|YP_001013464.1| - 0.13 11.0 0.1 0.63 8.8 0.0 1.8 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer AAA_19 PF13245.6 gi|124028144|ref|YP_001013464.1| - 0.13 12.5 0.1 0.48 10.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|124028144|ref|YP_001013464.1| - 0.17 11.7 0.1 0.47 10.3 0.1 1.7 1 0 0 1 1 1 0 NTPase ATPase_2 PF01637.18 gi|124028144|ref|YP_001013464.1| - 0.18 11.7 0.0 0.37 10.7 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|124028144|ref|YP_001013464.1| - 0.19 12.3 0.0 0.47 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|124028144|ref|YP_001013464.1| - 0.19 11.4 0.0 0.59 9.8 0.0 1.8 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_7 PF12775.7 gi|124028144|ref|YP_001013464.1| - 0.21 11.1 0.0 0.4 10.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|124028144|ref|YP_001013464.1| - 0.67 9.5 5.1 12 5.4 0.4 3.6 3 1 1 4 4 4 0 AAA domain DEAD PF00270.29 gi|124028145|ref|YP_001013465.1| - 2.6e-33 115.3 0.0 6.8e-33 113.9 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|124028145|ref|YP_001013465.1| - 3.5e-26 92.2 0.0 1.8e-25 89.9 0.0 2.2 2 0 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.31 gi|124028145|ref|YP_001013465.1| - 4.3e-20 72.1 0.2 1.2e-19 70.6 0.2 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|124028145|ref|YP_001013465.1| - 9.2e-08 32.3 0.0 1.6e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HypA PF01155.19 gi|124028145|ref|YP_001013465.1| - 0.001 19.1 0.2 0.003 17.6 0.2 1.7 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA T4SS-DNA_transf PF02534.14 gi|124028145|ref|YP_001013465.1| - 0.063 12.1 0.0 0.27 10.0 0.0 1.8 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer UPF0515 PF15135.6 gi|124028145|ref|YP_001013465.1| - 0.085 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 DUF4379 PF14311.6 gi|124028145|ref|YP_001013465.1| - 0.11 12.8 0.3 0.21 11.9 0.3 1.4 1 0 0 1 1 1 0 Probable Zinc-ribbon domain DUF4776 PF16003.5 gi|124028145|ref|YP_001013465.1| - 0.15 11.1 0.2 0.2 10.6 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) SecA_DEAD PF07517.14 gi|124028145|ref|YP_001013465.1| - 0.16 11.2 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain TFIIS_C PF01096.18 gi|124028145|ref|YP_001013465.1| - 0.17 11.8 0.6 8.4 6.3 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) AAA_10 PF12846.7 gi|124028147|ref|YP_001013467.1| - 4.3e-11 42.3 0.0 7.6e-05 21.8 0.0 2.2 1 1 1 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|124028147|ref|YP_001013467.1| - 6.2e-07 28.7 0.0 0.0013 17.7 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|124028147|ref|YP_001013467.1| - 1.5e-05 25.3 0.1 5.2e-05 23.5 0.0 1.9 2 1 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|124028147|ref|YP_001013467.1| - 2.8e-05 24.3 0.0 5.5e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_30 PF13604.6 gi|124028147|ref|YP_001013467.1| - 3.8e-05 23.5 0.0 6.3e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF853 PF05872.12 gi|124028147|ref|YP_001013467.1| - 0.00015 20.5 0.0 0.0047 15.6 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 gi|124028147|ref|YP_001013467.1| - 0.0008 18.8 0.0 0.015 14.7 0.0 2.2 1 1 1 2 2 2 1 FtsK/SpoIIIE family TraG-D_C PF12696.7 gi|124028147|ref|YP_001013467.1| - 0.01 15.8 0.0 0.023 14.7 0.0 1.5 1 1 0 1 1 1 0 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 gi|124028147|ref|YP_001013467.1| - 0.013 14.4 0.1 0.028 13.2 0.0 1.5 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer Helicase_RecD PF05127.14 gi|124028147|ref|YP_001013467.1| - 0.013 15.3 0.0 0.034 14.0 0.0 1.7 1 1 0 1 1 1 0 Helicase ResIII PF04851.15 gi|124028147|ref|YP_001013467.1| - 0.014 15.4 0.0 1.1 9.2 0.0 2.2 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|124028147|ref|YP_001013467.1| - 0.1 13.0 0.4 0.33 11.3 0.4 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|124028147|ref|YP_001013467.1| - 0.1 12.9 0.3 0.41 11.0 0.3 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|124028147|ref|YP_001013467.1| - 0.13 12.2 0.1 0.43 10.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Ribosomal_L2_C PF03947.18 gi|124028148|ref|YP_001013468.1| - 1.2e-45 154.8 0.6 1.7e-45 154.2 0.6 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|124028148|ref|YP_001013468.1| - 1.3e-12 47.5 0.0 4.5e-12 45.8 0.0 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain RsgI_N PF12791.7 gi|124028148|ref|YP_001013468.1| - 0.0036 17.2 0.2 0.41 10.6 0.0 2.4 2 0 0 2 2 2 2 Anti-sigma factor N-terminus Ribosomal_S19 PF00203.21 gi|124028149|ref|YP_001013469.1| - 1.4e-34 117.8 0.1 1.9e-34 117.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Phage_capsid PF05065.13 gi|124028149|ref|YP_001013469.1| - 0.17 11.2 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Phage capsid family Methyltransf_11 PF08241.12 gi|124028150|ref|YP_001013470.1| - 1.6e-14 54.3 0.0 3.4e-14 53.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|124028150|ref|YP_001013470.1| - 4.4e-13 49.7 0.0 8.8e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|124028150|ref|YP_001013470.1| - 3.9e-08 34.0 0.0 5.8e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|124028150|ref|YP_001013470.1| - 8.4e-08 32.2 0.1 1.1e-07 31.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|124028150|ref|YP_001013470.1| - 2.7e-07 30.2 0.0 3.3e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.18 gi|124028150|ref|YP_001013470.1| - 0.00013 21.7 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MatP_C PF17414.2 gi|124028150|ref|YP_001013470.1| - 0.11 12.7 0.5 3 8.1 0.0 2.7 3 0 0 3 3 3 0 MatP C-terminal ribbon-helix-helix domain AAA_5 PF07728.14 gi|124028152|ref|YP_001013472.1| - 6.6e-18 65.0 0.0 1.2e-17 64.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|124028152|ref|YP_001013472.1| - 3.7e-05 24.1 0.0 0.00012 22.5 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|124028152|ref|YP_001013472.1| - 0.00017 21.3 0.0 0.12 12.0 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|124028152|ref|YP_001013472.1| - 0.00038 20.3 0.0 0.0022 17.8 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|124028152|ref|YP_001013472.1| - 0.00043 19.6 0.0 0.001 18.3 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|124028152|ref|YP_001013472.1| - 0.0016 18.9 0.0 0.0028 18.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|124028152|ref|YP_001013472.1| - 0.0045 17.5 0.0 0.015 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|124028152|ref|YP_001013472.1| - 0.0046 16.4 0.1 0.033 13.6 0.0 2.3 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|124028152|ref|YP_001013472.1| - 0.008 15.9 0.0 0.014 15.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|124028152|ref|YP_001013472.1| - 0.01 15.8 0.1 0.043 13.7 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.6 gi|124028152|ref|YP_001013472.1| - 0.013 15.9 0.5 0.22 11.8 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|124028152|ref|YP_001013472.1| - 0.017 14.7 0.0 0.051 13.1 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_6 PF12774.7 gi|124028152|ref|YP_001013472.1| - 0.039 12.9 0.0 0.063 12.2 0.0 1.2 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_2 PF07724.14 gi|124028152|ref|YP_001013472.1| - 0.043 13.9 0.0 0.1 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_11 PF13086.6 gi|124028152|ref|YP_001013472.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|124028152|ref|YP_001013472.1| - 0.13 12.0 0.2 0.77 9.5 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|124028152|ref|YP_001013472.1| - 0.14 11.9 0.2 0.42 10.3 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|124028152|ref|YP_001013472.1| - 0.18 12.0 0.0 0.42 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|124028152|ref|YP_001013472.1| - 0.21 10.7 0.0 0.32 10.0 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 VWA_CoxE PF05762.14 gi|124028153|ref|YP_001013473.1| - 1.5e-16 60.5 1.7 1.5e-15 57.2 2.2 2.4 3 0 0 3 3 3 1 VWA domain containing CoxE-like protein DUF2201 PF09967.9 gi|124028153|ref|YP_001013473.1| - 0.00017 21.7 0.1 0.00053 20.1 0.1 1.9 2 0 0 2 2 2 1 VWA-like domain (DUF2201) VWA_2 PF13519.6 gi|124028153|ref|YP_001013473.1| - 0.057 14.1 0.4 0.48 11.1 0.1 2.8 2 1 0 2 2 2 0 von Willebrand factor type A domain RuvA_C PF07499.13 gi|124028154|ref|YP_001013474.1| - 0.016 15.6 0.7 3.6 8.1 0.0 2.3 2 0 0 2 2 2 0 RuvA, C-terminal domain DUF4265 PF14085.6 gi|124028154|ref|YP_001013474.1| - 0.061 13.3 0.1 0.076 13.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4265) RraB PF06877.11 gi|124028154|ref|YP_001013474.1| - 0.075 13.8 0.1 0.092 13.5 0.1 1.3 1 1 0 1 1 1 0 Regulator of ribonuclease activity B CxxCxxCC PF03692.15 gi|124028155|ref|YP_001013475.1| - 8.5e-09 36.0 0.3 3.3e-08 34.1 0.3 2.0 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|124028155|ref|YP_001013475.1| - 0.1 12.4 0.5 0.19 11.5 0.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3109) Methyltrn_RNA_3 PF02598.17 gi|124028156|ref|YP_001013476.1| - 6.3e-47 160.4 0.0 7.1e-47 160.3 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase Ribosomal_L3 PF00297.22 gi|124028157|ref|YP_001013477.1| - 3e-69 233.8 0.0 5.8e-69 232.8 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|124028158|ref|YP_001013478.1| - 7.8e-40 136.6 0.3 9.9e-40 136.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Cm_res_leader PF08077.11 gi|124028158|ref|YP_001013478.1| - 0.097 12.8 0.5 0.8 10.0 0.5 2.5 1 0 0 1 1 1 0 Chloramphenicol resistance gene leader peptide Ribosomal_L23 PF00276.20 gi|124028159|ref|YP_001013479.1| - 2.6e-20 72.6 5.3 2.4e-19 69.5 5.3 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.17 gi|124028159|ref|YP_001013479.1| - 0.0024 17.7 0.3 0.0037 17.0 0.3 1.4 1 1 0 1 1 1 1 Sulfurtransferase TusA Ribosomal_L22 PF00237.19 gi|124028160|ref|YP_001013480.1| - 1.6e-29 102.1 0.1 2e-29 101.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Cytomega_US3 PF05963.11 gi|124028160|ref|YP_001013480.1| - 0.14 11.8 0.0 0.34 10.5 0.0 1.6 1 1 1 2 2 2 0 Cytomegalovirus US3 protein Ribosomal_S3_C PF00189.20 gi|124028161|ref|YP_001013481.1| - 2.1e-21 76.2 6.4 4.8e-21 75.1 3.3 2.3 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|124028161|ref|YP_001013481.1| - 9.8e-12 44.5 0.1 2.9e-11 43.0 0.0 1.9 2 0 0 2 2 2 1 KH domain SPOB_a PF14689.6 gi|124028161|ref|YP_001013481.1| - 0.066 12.9 0.1 0.15 11.8 0.1 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Cas_Csa5 PF09702.10 gi|124028161|ref|YP_001013481.1| - 0.13 12.5 1.0 0.82 10.0 0.6 2.5 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Csa5) Ribosomal_L29 PF00831.23 gi|124028162|ref|YP_001013482.1| - 8.3e-23 80.1 3.7 8.3e-23 80.1 3.7 1.3 1 1 0 1 1 1 1 Ribosomal L29 protein WHIM1 PF15612.6 gi|124028162|ref|YP_001013482.1| - 0.018 14.6 0.1 0.031 13.8 0.1 1.5 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 1 DUF2299 PF10061.9 gi|124028162|ref|YP_001013482.1| - 0.058 13.1 0.2 0.072 12.8 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) RPAP1_N PF08621.10 gi|124028162|ref|YP_001013482.1| - 0.071 12.9 0.8 0.071 12.9 0.8 2.2 2 0 0 2 2 2 0 RPAP1-like, N-terminal UPF0086 PF01868.16 gi|124028163|ref|YP_001013483.1| - 5.5e-17 61.5 0.1 6.5e-17 61.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Myosin_N PF02736.19 gi|124028163|ref|YP_001013483.1| - 0.014 15.2 0.6 0.026 14.3 0.6 1.5 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain Ribosomal_S17 PF00366.20 gi|124028164|ref|YP_001013484.1| - 7e-28 96.5 0.4 9.2e-28 96.2 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|124028164|ref|YP_001013484.1| - 0.00097 19.5 0.1 0.0023 18.3 0.1 1.6 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal Adeno_E4 PF05385.11 gi|124028164|ref|YP_001013484.1| - 0.07 13.2 0.2 0.095 12.8 0.2 1.2 1 0 0 1 1 1 0 Mastadenovirus early E4 13 kDa protein zf-C3H1 PF10650.9 gi|124028164|ref|YP_001013484.1| - 0.15 11.8 1.1 0.27 11.0 1.1 1.3 1 0 0 1 1 1 0 Putative zinc-finger domain Ribosomal_L14 PF00238.19 gi|124028165|ref|YP_001013485.1| - 9.5e-39 132.2 0.2 1.1e-38 132.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|124028166|ref|YP_001013486.1| - 4.2e-35 120.1 0.2 5.3e-35 119.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|124028166|ref|YP_001013486.1| - 2.7e-06 27.1 5.4 2.7e-06 27.1 5.4 1.6 2 0 0 2 2 2 1 KOW motif Ribosomal_S4e PF00900.20 gi|124028167|ref|YP_001013487.1| - 8.3e-27 92.9 0.0 1.4e-26 92.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|124028167|ref|YP_001013487.1| - 9.2e-18 64.1 1.8 2e-17 63.0 1.8 1.6 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|124028167|ref|YP_001013487.1| - 9.6e-14 50.8 0.1 1.9e-13 49.9 0.1 1.5 1 0 0 1 1 1 1 S4 domain 40S_S4_C PF16121.5 gi|124028167|ref|YP_001013487.1| - 0.0017 18.0 0.0 0.0034 17.0 0.0 1.5 1 0 0 1 1 1 1 40S ribosomal protein S4 C-terminus KOW PF00467.29 gi|124028167|ref|YP_001013487.1| - 0.0051 16.7 1.8 0.011 15.6 1.8 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L5_C PF00673.21 gi|124028168|ref|YP_001013488.1| - 1.5e-24 86.0 0.0 3e-24 85.0 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|124028168|ref|YP_001013488.1| - 2.2e-23 82.3 0.7 4.3e-23 81.4 0.7 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|124028169|ref|YP_001013489.1| - 6.2e-12 45.1 3.6 6.8e-12 45.0 3.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|124028169|ref|YP_001013489.1| - 0.0034 17.2 3.5 0.0094 15.8 2.3 1.9 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS zf-UBR PF02207.20 gi|124028169|ref|YP_001013489.1| - 0.008 16.3 0.2 0.01 16.0 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger in N-recognin (UBR box) Zn_Tnp_IS91 PF14319.6 gi|124028169|ref|YP_001013489.1| - 0.014 15.4 0.3 0.016 15.3 0.3 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF1451 PF07295.11 gi|124028169|ref|YP_001013489.1| - 0.044 13.8 0.1 0.047 13.7 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Ribosomal_L37ae PF01780.19 gi|124028169|ref|YP_001013489.1| - 0.058 13.5 1.5 0.064 13.3 1.1 1.3 1 1 0 1 1 1 0 Ribosomal L37ae protein family zf-IS66 PF13005.7 gi|124028169|ref|YP_001013489.1| - 0.17 12.3 1.5 0.17 12.3 1.5 1.9 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Adenylsucc_synt PF00709.21 gi|124028169|ref|YP_001013489.1| - 0.21 10.5 0.0 0.21 10.5 0.0 1.0 1 0 0 1 1 1 0 Adenylosuccinate synthetase Zn_ribbon_SprT PF17283.2 gi|124028169|ref|YP_001013489.1| - 0.91 9.5 9.7 0.31 11.0 3.0 2.1 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Ribosomal_S8 PF00410.19 gi|124028170|ref|YP_001013490.1| - 6.7e-28 97.2 0.1 1.1e-27 96.5 0.1 1.3 1 1 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|124028171|ref|YP_001013491.1| - 6.4e-32 110.1 12.7 3.3e-17 62.9 1.8 2.2 2 0 0 2 2 2 2 Ribosomal protein L6 ORC2 PF04084.14 gi|124028171|ref|YP_001013491.1| - 0.21 10.5 0.0 0.23 10.3 0.0 1.1 1 0 0 1 1 1 0 Origin recognition complex subunit 2 Ribosomal_L32e PF01655.18 gi|124028172|ref|YP_001013492.1| - 2.9e-32 111.3 0.0 5e-32 110.5 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|124028173|ref|YP_001013493.1| - 1.5e-58 196.9 3.8 1.7e-58 196.8 3.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ish1 PF10281.9 gi|124028173|ref|YP_001013493.1| - 0.0038 17.5 0.0 0.71 10.2 0.0 3.1 3 0 0 3 3 3 1 Putative stress-responsive nuclear envelope protein Ribosomal_L5e PF17144.4 gi|124028174|ref|YP_001013494.1| - 1.5e-36 125.8 1.7 7.6e-23 81.3 0.9 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|124028174|ref|YP_001013494.1| - 1.2e-10 42.1 0.6 2e-10 41.5 0.6 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|124028174|ref|YP_001013494.1| - 1.4e-08 35.1 0.0 2e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DUF4125 PF13526.6 gi|124028174|ref|YP_001013494.1| - 0.02 14.5 0.0 6.3 6.4 0.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4125) VASP_tetra PF08776.11 gi|124028174|ref|YP_001013494.1| - 0.06 12.9 1.9 0.12 12.0 1.9 1.4 1 0 0 1 1 1 0 VASP tetramerisation domain HBD PF18534.1 gi|124028174|ref|YP_001013494.1| - 0.075 13.2 0.3 1.2 9.3 0.0 2.3 2 0 0 2 2 2 0 Helical bundle domain Ribosomal_S5_C PF03719.15 gi|124028175|ref|YP_001013495.1| - 1.1e-25 88.8 0.0 2.2e-25 87.9 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|124028175|ref|YP_001013495.1| - 2.5e-25 88.2 3.6 4.2e-25 87.5 2.8 1.8 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.20 gi|124028176|ref|YP_001013496.1| - 8.2e-13 48.0 0.1 1.9e-12 46.9 0.1 1.7 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|124028177|ref|YP_001013497.1| - 6.8e-22 78.5 0.2 9e-22 78.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|124028178|ref|YP_001013498.1| - 1.3e-57 195.4 16.9 1.7e-57 195.0 16.9 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|124028178|ref|YP_001013498.1| - 3.7e-05 23.5 1.2 0.00012 21.8 1.2 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p AAA_17 PF13207.6 gi|124028179|ref|YP_001013499.1| - 2.3e-36 125.2 0.0 3.3e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|124028179|ref|YP_001013499.1| - 1.6e-08 35.1 0.0 2.3e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|124028179|ref|YP_001013499.1| - 2.4e-06 28.0 0.1 3.8e-06 27.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|124028179|ref|YP_001013499.1| - 2.5e-06 27.5 1.2 3.9e-06 26.9 0.6 1.6 2 0 0 2 2 2 1 NTPase AAA_33 PF13671.6 gi|124028179|ref|YP_001013499.1| - 5.5e-06 26.6 0.2 1.8e-05 24.9 0.2 1.9 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|124028179|ref|YP_001013499.1| - 6.7e-06 25.9 0.0 1.6e-05 24.6 0.0 1.5 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.29 gi|124028179|ref|YP_001013499.1| - 2.6e-05 24.6 0.1 0.00017 22.0 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|124028179|ref|YP_001013499.1| - 4e-05 23.9 0.1 9.6e-05 22.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|124028179|ref|YP_001013499.1| - 4.1e-05 23.4 0.0 0.25 11.0 0.0 2.2 2 0 0 2 2 2 2 Thymidylate kinase MeaB PF03308.16 gi|124028179|ref|YP_001013499.1| - 9.4e-05 21.5 0.3 0.00019 20.5 0.3 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|124028179|ref|YP_001013499.1| - 0.00098 19.0 0.5 0.0017 18.2 0.1 1.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein APS_kinase PF01583.20 gi|124028179|ref|YP_001013499.1| - 0.001 19.0 0.2 0.019 14.8 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_30 PF13604.6 gi|124028179|ref|YP_001013499.1| - 0.0011 18.7 1.9 0.0014 18.3 0.1 1.9 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|124028179|ref|YP_001013499.1| - 0.0012 19.2 0.1 0.003 17.8 0.1 1.8 1 1 1 2 2 2 1 AAA domain NACHT PF05729.12 gi|124028179|ref|YP_001013499.1| - 0.002 18.1 0.0 0.0039 17.1 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|124028179|ref|YP_001013499.1| - 0.0029 17.6 0.0 0.0054 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) SKI PF01202.22 gi|124028179|ref|YP_001013499.1| - 0.0038 17.4 0.3 0.31 11.2 0.0 2.3 2 0 0 2 2 2 1 Shikimate kinase KTI12 PF08433.10 gi|124028179|ref|YP_001013499.1| - 0.0044 16.5 0.0 0.0074 15.8 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Viral_helicase1 PF01443.18 gi|124028179|ref|YP_001013499.1| - 0.0046 16.7 0.0 0.008 15.9 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.22 gi|124028179|ref|YP_001013499.1| - 0.016 14.4 0.0 0.022 13.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.6 gi|124028179|ref|YP_001013499.1| - 0.019 15.3 0.2 0.048 14.0 0.2 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|124028179|ref|YP_001013499.1| - 0.026 14.1 0.0 0.072 12.7 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|124028179|ref|YP_001013499.1| - 0.036 13.1 0.1 0.65 9.0 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein Pox_A11 PF05061.13 gi|124028179|ref|YP_001013499.1| - 0.038 13.3 0.1 0.045 13.0 0.1 1.2 1 0 0 1 1 1 0 Poxvirus A11 Protein 6PF2K PF01591.18 gi|124028179|ref|YP_001013499.1| - 0.053 12.8 0.0 0.078 12.3 0.0 1.2 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_14 PF13173.6 gi|124028179|ref|YP_001013499.1| - 0.053 13.6 0.0 0.079 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|124028179|ref|YP_001013499.1| - 0.072 13.0 0.1 0.26 11.1 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|124028179|ref|YP_001013499.1| - 0.073 13.0 0.2 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.9 gi|124028179|ref|YP_001013499.1| - 0.081 12.1 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|124028179|ref|YP_001013499.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|124028179|ref|YP_001013499.1| - 0.13 11.5 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Ribosomal_L34e PF01199.18 gi|124028181|ref|YP_001013501.1| - 2.2e-28 98.4 1.5 2.8e-28 98.1 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L34e DUF4428 PF14471.6 gi|124028181|ref|YP_001013501.1| - 0.0041 17.0 0.2 0.16 11.9 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4428) zf-C3HC4_3 PF13920.6 gi|124028181|ref|YP_001013501.1| - 0.096 12.6 0.9 5.1 7.0 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Cytidylate_kin2 PF13189.6 gi|124028182|ref|YP_001013502.1| - 8.3e-21 74.9 0.2 7.1e-10 39.3 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase-like family AAA_17 PF13207.6 gi|124028182|ref|YP_001013502.1| - 5.8e-16 59.1 0.0 1.1e-15 58.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|124028182|ref|YP_001013502.1| - 8.4e-16 58.7 0.1 1.3e-15 58.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|124028182|ref|YP_001013502.1| - 6.3e-14 52.2 0.7 8.9e-07 28.8 0.0 2.2 1 1 1 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|124028182|ref|YP_001013502.1| - 2.4e-07 31.0 0.0 6.3e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|124028182|ref|YP_001013502.1| - 7.4e-06 26.3 0.0 1.7e-05 25.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|124028182|ref|YP_001013502.1| - 7.9e-05 22.8 0.0 0.00015 21.9 0.0 1.5 2 0 0 2 2 1 1 Adenylate kinase dNK PF01712.19 gi|124028182|ref|YP_001013502.1| - 0.00011 22.2 0.0 0.16 11.8 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA PF00004.29 gi|124028182|ref|YP_001013502.1| - 0.00013 22.4 0.0 0.00047 20.6 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|124028182|ref|YP_001013502.1| - 0.00023 21.5 0.0 0.00043 20.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|124028182|ref|YP_001013502.1| - 0.00056 20.3 0.0 0.00068 20.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SKI PF01202.22 gi|124028182|ref|YP_001013502.1| - 0.00086 19.5 0.0 0.045 13.9 0.0 2.1 2 0 0 2 2 2 1 Shikimate kinase NACHT PF05729.12 gi|124028182|ref|YP_001013502.1| - 0.001 19.0 0.0 0.002 18.1 0.0 1.5 1 0 0 1 1 1 1 NACHT domain CoaE PF01121.20 gi|124028182|ref|YP_001013502.1| - 0.0014 18.4 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 2 Dephospho-CoA kinase PRK PF00485.18 gi|124028182|ref|YP_001013502.1| - 0.0015 18.3 0.1 0.13 12.0 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 gi|124028182|ref|YP_001013502.1| - 0.0075 16.6 0.0 0.016 15.6 0.0 1.6 1 0 0 1 1 1 1 RNA helicase NTPase_1 PF03266.15 gi|124028182|ref|YP_001013502.1| - 0.0097 15.8 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 NTPase NB-ARC PF00931.22 gi|124028182|ref|YP_001013502.1| - 0.012 14.8 0.0 1 8.5 0.0 2.5 2 1 0 2 2 2 0 NB-ARC domain AAA_5 PF07728.14 gi|124028182|ref|YP_001013502.1| - 0.026 14.5 0.1 0.073 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) KTI12 PF08433.10 gi|124028182|ref|YP_001013502.1| - 0.03 13.8 0.0 0.077 12.4 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.17 gi|124028182|ref|YP_001013502.1| - 0.031 14.0 0.0 5.8 6.6 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase RuvB_N PF05496.12 gi|124028182|ref|YP_001013502.1| - 0.032 14.0 0.0 0.076 12.8 0.0 1.6 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|124028182|ref|YP_001013502.1| - 0.04 13.7 0.0 0.064 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|124028182|ref|YP_001013502.1| - 0.053 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|124028182|ref|YP_001013502.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Viral_helicase1 PF01443.18 gi|124028182|ref|YP_001013502.1| - 0.063 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 gi|124028182|ref|YP_001013502.1| - 0.077 13.5 0.0 0.088 13.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|124028182|ref|YP_001013502.1| - 0.082 12.2 0.0 0.18 11.0 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin Mg_chelatase PF01078.21 gi|124028182|ref|YP_001013502.1| - 0.094 12.1 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|124028182|ref|YP_001013502.1| - 0.095 12.6 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|124028182|ref|YP_001013502.1| - 0.11 12.2 0.2 0.73 9.5 0.1 2.1 1 1 1 2 2 2 0 AAA domain RHH_1 PF01402.21 gi|124028182|ref|YP_001013502.1| - 0.15 12.0 2.7 4.7 7.3 0.6 2.5 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family AAA_19 PF13245.6 gi|124028182|ref|YP_001013502.1| - 0.22 11.9 0.1 0.52 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain E3_binding PF02817.17 gi|124028182|ref|YP_001013502.1| - 1.6 9.1 5.9 27 5.2 0.0 3.7 5 0 0 5 5 4 0 e3 binding domain KOW PF00467.29 gi|124028183|ref|YP_001013503.1| - 4.5e-05 23.2 0.1 0.0001 22.1 0.1 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.17 gi|124028183|ref|YP_001013503.1| - 0.0015 19.0 0.0 0.002 18.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 XisI PF08869.11 gi|124028183|ref|YP_001013503.1| - 0.062 13.7 0.0 0.079 13.3 0.0 1.1 1 0 0 1 1 1 0 XisI protein PUA PF01472.20 gi|124028184|ref|YP_001013504.1| - 7.2e-24 83.5 2.8 1.4e-23 82.7 2.8 1.5 1 0 0 1 1 1 1 PUA domain TruB_N PF01509.18 gi|124028184|ref|YP_001013504.1| - 9.7e-24 84.4 0.6 3.1e-15 56.8 0.2 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|124028184|ref|YP_001013504.1| - 1.2e-23 83.1 0.1 3.7e-23 81.5 0.0 1.9 2 0 0 2 2 2 1 tRNA pseudouridylate synthase B C-terminal domain DKCLD PF08068.12 gi|124028184|ref|YP_001013504.1| - 1.2e-16 60.5 0.1 2.7e-16 59.4 0.1 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|124028184|ref|YP_001013504.1| - 0.021 15.1 0.0 0.047 14.0 0.0 1.6 1 0 0 1 1 1 0 UPF0113 PUA domain MTS PF05175.14 gi|124028185|ref|YP_001013505.1| - 3.8e-46 156.7 0.0 4.4e-46 156.5 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|124028185|ref|YP_001013505.1| - 5.8e-18 65.1 0.0 8.6e-18 64.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|124028185|ref|YP_001013505.1| - 2e-15 57.3 0.0 3.6e-15 56.4 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain PrmA PF06325.13 gi|124028185|ref|YP_001013505.1| - 3.9e-13 49.4 0.0 4.7e-13 49.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|124028185|ref|YP_001013505.1| - 1.3e-11 44.6 0.0 1.6e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|124028185|ref|YP_001013505.1| - 2.4e-11 44.2 0.0 3.6e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|124028185|ref|YP_001013505.1| - 7.5e-11 42.5 0.0 2.6e-10 40.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|124028185|ref|YP_001013505.1| - 1.1e-09 38.4 0.0 1.5e-09 37.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|124028185|ref|YP_001013505.1| - 4.1e-07 30.0 0.0 5.5e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|124028185|ref|YP_001013505.1| - 1.6e-06 27.8 0.0 2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|124028185|ref|YP_001013505.1| - 1.8e-06 27.8 0.0 3.2e-06 27.0 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|124028185|ref|YP_001013505.1| - 4.8e-06 26.3 0.0 6e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 GidB PF02527.15 gi|124028185|ref|YP_001013505.1| - 7.6e-06 25.4 0.1 1.1e-05 24.9 0.1 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Ubie_methyltran PF01209.18 gi|124028185|ref|YP_001013505.1| - 2.1e-05 24.0 0.0 2.6e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|124028185|ref|YP_001013505.1| - 2.2e-05 24.0 0.1 3.9e-05 23.2 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_16 PF10294.9 gi|124028185|ref|YP_001013505.1| - 3.5e-05 23.6 0.0 4.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_2 PF00891.18 gi|124028185|ref|YP_001013505.1| - 5.2e-05 22.6 0.1 7.5e-05 22.1 0.1 1.4 1 1 0 1 1 1 1 O-methyltransferase domain N6_Mtase PF02384.16 gi|124028185|ref|YP_001013505.1| - 5.9e-05 22.5 0.0 9.3e-05 21.8 0.0 1.4 1 1 0 1 1 1 1 N-6 DNA Methylase PCMT PF01135.19 gi|124028185|ref|YP_001013505.1| - 0.00023 21.0 0.1 0.0003 20.6 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|124028185|ref|YP_001013505.1| - 0.00048 19.5 0.0 0.00057 19.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|124028185|ref|YP_001013505.1| - 0.0013 18.8 0.0 0.0018 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|124028185|ref|YP_001013505.1| - 0.0041 16.2 0.0 0.005 15.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.11 gi|124028185|ref|YP_001013505.1| - 0.0069 16.0 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TrmK PF04816.12 gi|124028185|ref|YP_001013505.1| - 0.0088 15.6 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase TRM PF02005.16 gi|124028185|ref|YP_001013505.1| - 0.014 14.6 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase tRNA_U5-meth_tr PF05958.11 gi|124028185|ref|YP_001013505.1| - 0.019 13.9 0.0 0.041 12.9 0.0 1.4 2 0 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase TrkA_N PF02254.18 gi|124028185|ref|YP_001013505.1| - 0.039 14.2 0.0 0.091 13.0 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_24 PF13578.6 gi|124028185|ref|YP_001013505.1| - 0.046 14.8 0.0 0.062 14.3 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.17 gi|124028185|ref|YP_001013505.1| - 0.095 11.9 0.0 0.16 11.1 0.0 1.4 2 0 0 2 2 1 0 O-methyltransferase FtsJ PF01728.19 gi|124028185|ref|YP_001013505.1| - 0.11 12.6 0.0 0.27 11.3 0.0 1.7 1 1 0 1 1 1 0 FtsJ-like methyltransferase MetW PF07021.12 gi|124028185|ref|YP_001013505.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF43 PF01861.16 gi|124028185|ref|YP_001013505.1| - 0.16 11.2 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Metallophos_2 PF12850.7 gi|124028186|ref|YP_001013506.1| - 9.7e-34 116.9 0.0 1.2e-33 116.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|124028186|ref|YP_001013506.1| - 5.9e-14 53.0 0.0 1.2e-12 48.8 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|124028186|ref|YP_001013506.1| - 7.6e-06 24.5 0.5 0.0063 14.9 0.2 2.1 1 1 1 2 2 2 2 Firmicute fructose-1,6-bisphosphatase Metallophos_3 PF14582.6 gi|124028186|ref|YP_001013506.1| - 0.0018 17.7 0.5 2.2 7.5 0.0 3.2 2 1 1 3 3 3 2 Metallophosphoesterase, calcineurin superfamily FCH PF00611.23 gi|124028187|ref|YP_001013507.1| - 0.00066 19.9 2.9 0.0017 18.6 0.5 2.2 2 0 0 2 2 2 1 Fes/CIP4, and EFC/F-BAR homology domain Rubrerythrin PF02915.17 gi|124028187|ref|YP_001013507.1| - 0.0012 19.3 14.9 0.013 15.9 14.9 2.4 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|124028187|ref|YP_001013507.1| - 0.0012 18.8 9.7 0.15 12.0 3.1 2.2 1 1 1 2 2 2 2 Ferritin-like domain DUF892 PF05974.12 gi|124028187|ref|YP_001013507.1| - 0.0031 17.6 8.5 0.21 11.6 8.5 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Adaptin_N PF01602.20 gi|124028187|ref|YP_001013507.1| - 0.015 13.9 1.4 0.017 13.7 1.4 1.0 1 0 0 1 1 1 0 Adaptin N terminal region EcoEI_R_C PF08463.10 gi|124028187|ref|YP_001013507.1| - 0.019 15.1 5.2 1.6 8.9 0.1 2.4 1 1 1 2 2 2 0 EcoEI R protein C-terminal FA_desaturase_2 PF03405.14 gi|124028187|ref|YP_001013507.1| - 0.031 13.1 1.8 0.1 11.4 0.5 1.9 1 1 1 2 2 2 0 Fatty acid desaturase Mannitol_dh PF01232.23 gi|124028187|ref|YP_001013507.1| - 0.085 13.0 3.2 2.1 8.5 0.7 2.1 1 1 1 2 2 2 0 Mannitol dehydrogenase Rossmann domain Ribonuc_red_sm PF00268.21 gi|124028187|ref|YP_001013507.1| - 0.087 12.3 3.1 0.12 11.8 1.3 1.9 1 1 1 2 2 2 0 Ribonucleotide reductase, small chain Cas_Cmr5 PF09701.10 gi|124028187|ref|YP_001013507.1| - 0.16 12.3 2.8 0.34 11.2 2.8 1.8 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Cmr5) BORCS7 PF16088.5 gi|124028187|ref|YP_001013507.1| - 0.24 11.7 3.1 0.51 10.6 3.1 1.6 1 1 0 1 1 1 0 BLOC-1-related complex sub-unit 7 Peptidase_S46 PF10459.9 gi|124028187|ref|YP_001013507.1| - 0.26 9.9 4.0 0.33 9.5 4.0 1.1 1 0 0 1 1 1 0 Peptidase S46 MutS_III PF05192.18 gi|124028187|ref|YP_001013507.1| - 0.62 10.3 2.7 0.77 9.9 2.7 1.1 1 0 0 1 1 1 0 MutS domain III ECH_2 PF16113.5 gi|124028187|ref|YP_001013507.1| - 0.79 9.1 4.2 1.8 8.0 3.1 1.6 1 1 0 1 1 1 0 Enoyl-CoA hydratase/isomerase TMPIT PF07851.13 gi|124028187|ref|YP_001013507.1| - 0.87 8.8 3.8 0.99 8.6 3.8 1.1 1 0 0 1 1 1 0 TMPIT-like protein FlgN PF05130.12 gi|124028187|ref|YP_001013507.1| - 1.2 9.7 14.5 0.46 11.0 8.5 2.0 1 1 1 2 2 2 0 FlgN protein DUF1451 PF07295.11 gi|124028187|ref|YP_001013507.1| - 3 7.9 6.3 3.1 7.8 3.3 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain COQ7 PF03232.13 gi|124028187|ref|YP_001013507.1| - 3.2 7.5 9.5 5.4 6.8 4.9 2.4 1 1 1 2 2 2 0 Ubiquinone biosynthesis protein COQ7 CPBP PF02517.16 gi|124028188|ref|YP_001013508.1| - 1.6e-08 34.8 10.2 1.6e-08 34.8 10.2 2.6 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease DUF5389 PF17364.2 gi|124028188|ref|YP_001013508.1| - 1.2 9.2 6.2 2.3 8.3 0.9 2.7 2 1 0 2 2 2 0 Family of unknown function (DUF5389) UbiA PF01040.18 gi|124028189|ref|YP_001013509.1| - 4.7e-40 137.5 22.3 4.7e-40 137.5 22.3 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family Succ_CoA_lig PF13607.6 gi|124028190|ref|YP_001013510.1| - 1.1e-52 177.5 0.2 2.1e-52 176.6 0.2 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|124028190|ref|YP_001013510.1| - 1.1e-28 100.0 1.0 8.3e-28 97.2 0.4 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|124028190|ref|YP_001013510.1| - 7.7e-18 65.0 2.8 7e-17 61.9 0.2 2.6 2 0 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.17 gi|124028190|ref|YP_001013510.1| - 0.02 15.5 0.5 0.61 10.7 0.1 3.3 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent ATP-grasp_5 PF13549.6 gi|124028191|ref|YP_001013511.1| - 1.6e-82 276.3 0.1 1.7e-82 276.2 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|124028191|ref|YP_001013511.1| - 1.4e-06 28.0 0.0 1.8e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|124028191|ref|YP_001013511.1| - 0.003 17.2 0.0 0.0049 16.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Na_H_antiporter PF03553.14 gi|124028192|ref|YP_001013512.1| - 3.9e-79 266.0 18.9 3.9e-79 266.0 18.9 2.2 1 1 1 2 2 2 1 Na+/H+ antiporter family SpoVAB PF13782.6 gi|124028192|ref|YP_001013512.1| - 3.6 7.9 17.8 1.4 9.2 0.5 4.3 4 1 0 4 4 4 0 Stage V sporulation protein AB M20_dimer PF07687.14 gi|124028193|ref|YP_001013513.1| - 0.0035 17.3 0.0 0.004 17.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase dimerisation domain HTH_AsnC-type PF13404.6 gi|124028194|ref|YP_001013514.1| - 3.3e-16 58.8 4.2 6.1e-16 58.0 4.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|124028194|ref|YP_001013514.1| - 4.8e-15 54.8 0.8 7.9e-15 54.2 0.8 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|124028194|ref|YP_001013514.1| - 9e-15 54.4 0.4 1.6e-14 53.6 0.4 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|124028194|ref|YP_001013514.1| - 8.5e-08 32.0 0.9 2.4e-07 30.6 0.2 2.0 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|124028194|ref|YP_001013514.1| - 6.2e-06 26.0 0.8 1.1e-05 25.3 0.4 1.5 2 0 0 2 2 1 1 MarR family NapD PF03927.13 gi|124028194|ref|YP_001013514.1| - 5.8e-05 23.1 0.7 9.7e-05 22.4 0.7 1.3 1 0 0 1 1 1 1 NapD protein Sigma70_r4_2 PF08281.12 gi|124028194|ref|YP_001013514.1| - 0.0001 21.9 0.4 0.00024 20.7 0.3 1.8 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|124028194|ref|YP_001013514.1| - 0.00013 21.9 0.3 0.00024 21.1 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|124028194|ref|YP_001013514.1| - 0.00018 21.2 0.7 0.00038 20.2 0.7 1.5 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.22 gi|124028194|ref|YP_001013514.1| - 0.0003 20.6 0.1 0.0014 18.5 0.1 2.0 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 gi|124028194|ref|YP_001013514.1| - 0.00033 20.1 1.3 0.00056 19.4 1.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|124028194|ref|YP_001013514.1| - 0.00038 20.3 0.0 0.00067 19.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|124028194|ref|YP_001013514.1| - 0.00045 20.3 0.5 0.00079 19.5 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|124028194|ref|YP_001013514.1| - 0.00048 19.8 0.3 0.0011 18.7 0.1 1.6 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain Mga PF05043.13 gi|124028194|ref|YP_001013514.1| - 0.00058 20.4 0.0 0.0018 18.8 0.0 1.7 2 0 0 2 2 2 1 Mga helix-turn-helix domain HTH_IclR PF09339.10 gi|124028194|ref|YP_001013514.1| - 0.0011 18.8 0.2 0.0022 17.8 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Mga PF08280.11 gi|124028194|ref|YP_001013514.1| - 0.0011 19.0 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Rrf2 PF02082.20 gi|124028194|ref|YP_001013514.1| - 0.0011 19.3 0.1 0.012 16.0 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator PaaX PF07848.12 gi|124028194|ref|YP_001013514.1| - 0.0019 18.4 0.1 0.0036 17.5 0.1 1.5 1 0 0 1 1 1 1 PaaX-like protein HTH_36 PF13730.6 gi|124028194|ref|YP_001013514.1| - 0.0022 17.9 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain CinA_KH PF18146.1 gi|124028194|ref|YP_001013514.1| - 0.0031 17.6 0.2 1.5 9.1 0.1 2.3 2 0 0 2 2 2 1 Damage-inducible protein CinA KH domain Fe_dep_repress PF01325.19 gi|124028194|ref|YP_001013514.1| - 0.007 16.5 0.0 0.015 15.5 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.27 gi|124028194|ref|YP_001013514.1| - 0.0089 16.0 0.1 0.019 14.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF4423 PF14394.6 gi|124028194|ref|YP_001013514.1| - 0.011 15.4 0.1 0.021 14.5 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) FaeA PF04703.12 gi|124028194|ref|YP_001013514.1| - 0.012 16.0 1.0 0.57 10.6 0.1 2.3 2 0 0 2 2 2 0 FaeA-like protein HTH_27 PF13463.6 gi|124028194|ref|YP_001013514.1| - 0.013 16.0 0.1 0.026 15.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|124028194|ref|YP_001013514.1| - 0.014 15.2 0.3 0.055 13.4 0.1 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|124028194|ref|YP_001013514.1| - 0.028 14.2 0.1 0.058 13.2 0.1 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Trans_reg_C PF00486.28 gi|124028194|ref|YP_001013514.1| - 0.036 14.1 0.7 0.32 11.1 0.7 2.3 1 1 0 1 1 1 0 Transcriptional regulatory protein, C terminal Rio2_N PF09202.11 gi|124028194|ref|YP_001013514.1| - 0.038 14.2 0.3 0.15 12.3 0.1 1.9 2 0 0 2 2 2 0 Rio2, N-terminal HTH_Crp_2 PF13545.6 gi|124028194|ref|YP_001013514.1| - 0.041 13.9 0.1 0.064 13.2 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|124028194|ref|YP_001013514.1| - 0.048 13.8 0.1 0.11 12.6 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_30 PF13556.6 gi|124028194|ref|YP_001013514.1| - 0.052 13.4 0.2 0.12 12.2 0.2 1.6 1 1 0 1 1 1 0 PucR C-terminal helix-turn-helix domain AbiEi_4 PF13338.6 gi|124028194|ref|YP_001013514.1| - 0.06 13.5 1.4 0.12 12.5 1.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator, AbiEi antitoxin GntR PF00392.21 gi|124028194|ref|YP_001013514.1| - 0.064 12.9 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family AsnC_trans_reg2 PF17805.1 gi|124028194|ref|YP_001013514.1| - 0.096 12.9 0.1 0.21 11.8 0.1 1.6 2 0 0 2 2 1 0 AsnC-like ligand binding domain MIase PF02426.16 gi|124028194|ref|YP_001013514.1| - 0.11 12.6 0.0 0.43 10.8 0.0 1.9 1 1 1 2 2 2 0 Muconolactone delta-isomerase rpo132 PF12415.8 gi|124028194|ref|YP_001013514.1| - 0.12 11.7 0.0 0.37 10.1 0.0 1.8 1 0 0 1 1 1 0 Poxvirus DNA dependent RNA polymerase DUF751 PF05421.11 gi|124028195|ref|YP_001013515.1| - 0.098 13.4 0.1 0.16 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF751) Glycos_trans_3N PF02885.17 gi|124028196|ref|YP_001013516.1| - 0.031 14.1 0.6 0.031 14.1 0.6 1.7 2 0 0 2 2 2 0 Glycosyl transferase family, helical bundle domain PMT_2 PF13231.6 gi|124028196|ref|YP_001013516.1| - 4 7.6 30.5 0.02 15.1 18.4 2.5 3 0 0 3 3 3 0 Dolichyl-phosphate-mannose-protein mannosyltransferase PIN PF01850.21 gi|124028197|ref|YP_001013517.1| - 2e-06 28.3 0.1 2.5e-06 28.0 0.1 1.1 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|124028198|ref|YP_001013518.1| - 8e-06 25.7 0.4 1.2e-05 25.1 0.4 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin B3 PF02362.21 gi|124028198|ref|YP_001013518.1| - 0.11 12.4 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 B3 DNA binding domain Molydop_binding PF01568.21 gi|124028198|ref|YP_001013518.1| - 0.14 12.2 0.1 0.18 11.8 0.1 1.1 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain Imm3 PF14425.6 gi|124028199|ref|YP_001013519.1| - 0.067 13.2 0.4 0.086 12.9 0.4 1.3 1 0 0 1 1 1 0 Immunity protein Imm3 PIN PF01850.21 gi|124028200|ref|YP_001013520.1| - 1.4e-11 44.9 1.4 1.9e-11 44.5 1.4 1.1 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|124028200|ref|YP_001013520.1| - 0.00041 20.6 0.1 0.00049 20.3 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|124028200|ref|YP_001013520.1| - 0.022 15.5 0.1 0.032 15.0 0.1 1.3 1 0 0 1 1 1 0 PIN domain GCD14 PF08704.10 gi|124028204|ref|YP_001013524.1| - 2.8e-31 109.1 0.0 2.7e-30 105.9 0.0 1.8 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|124028204|ref|YP_001013524.1| - 1.9e-18 67.0 0.0 2.4e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|124028204|ref|YP_001013524.1| - 2.3e-10 40.5 0.0 3e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|124028204|ref|YP_001013524.1| - 7.9e-08 32.9 0.0 1.5e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|124028204|ref|YP_001013524.1| - 1.3e-06 29.3 0.1 3.9e-06 27.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|124028204|ref|YP_001013524.1| - 1.4e-06 27.6 0.0 2e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.6 gi|124028204|ref|YP_001013524.1| - 1.1e-05 25.3 0.0 0.00029 20.7 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|124028204|ref|YP_001013524.1| - 3.1e-05 24.5 0.0 7e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|124028204|ref|YP_001013524.1| - 3.2e-05 23.1 0.0 4.8e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14_N PF14801.6 gi|124028204|ref|YP_001013524.1| - 9.1e-05 22.2 0.0 0.00021 21.1 0.0 1.6 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltr_RsmB-F PF01189.17 gi|124028204|ref|YP_001013524.1| - 0.00011 21.9 0.0 0.00017 21.3 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Fibrillarin PF01269.17 gi|124028204|ref|YP_001013524.1| - 0.00026 20.2 0.0 0.00039 19.6 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin CMAS PF02353.20 gi|124028204|ref|YP_001013524.1| - 0.00028 20.3 0.0 0.00041 19.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 gi|124028204|ref|YP_001013524.1| - 0.0029 18.3 0.0 0.013 16.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|124028204|ref|YP_001013524.1| - 0.0057 16.2 0.0 0.0088 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|124028204|ref|YP_001013524.1| - 0.0067 15.8 0.0 0.009 15.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|124028204|ref|YP_001013524.1| - 0.012 15.5 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|124028204|ref|YP_001013524.1| - 0.024 14.6 0.0 0.032 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|124028204|ref|YP_001013524.1| - 0.034 13.8 0.0 0.54 9.9 0.0 2.3 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.17 gi|124028204|ref|YP_001013524.1| - 0.14 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase DUF1610 PF07754.11 gi|124028205|ref|YP_001013525.1| - 7.3e-14 51.4 10.6 6.6e-11 42.0 6.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-NADH-PPase PF09297.11 gi|124028205|ref|YP_001013525.1| - 0.0002 20.9 1.5 0.0002 20.9 1.5 2.9 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|124028205|ref|YP_001013525.1| - 0.0006 19.8 9.5 0.015 15.3 9.6 2.4 1 1 0 1 1 1 1 Double zinc ribbon C1_2 PF03107.16 gi|124028205|ref|YP_001013525.1| - 0.0018 18.6 5.1 0.18 12.1 1.6 2.1 1 1 1 2 2 2 2 C1 domain zf_UBZ PF18439.1 gi|124028205|ref|YP_001013525.1| - 0.0042 16.7 13.4 3.3 7.4 0.1 4.3 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-MYND PF01753.18 gi|124028205|ref|YP_001013525.1| - 0.0058 16.7 4.6 1.7 8.8 4.6 2.3 1 1 0 1 1 1 1 MYND finger zinc_ribbon_2 PF13240.6 gi|124028205|ref|YP_001013525.1| - 0.0087 15.8 17.0 0.082 12.7 3.2 3.7 2 2 0 2 2 2 1 zinc-ribbon domain zf-RING_7 PF02591.15 gi|124028205|ref|YP_001013525.1| - 0.0094 16.1 9.4 3.4 7.9 1.1 3.3 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-RING_9 PF13901.6 gi|124028205|ref|YP_001013525.1| - 0.012 15.6 3.1 0.014 15.4 3.1 1.0 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon HypA PF01155.19 gi|124028205|ref|YP_001013525.1| - 0.021 14.8 7.7 0.16 12.0 0.2 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|124028205|ref|YP_001013525.1| - 0.022 14.7 5.7 0.39 10.7 6.0 2.1 1 1 1 2 2 2 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|124028205|ref|YP_001013525.1| - 0.03 13.7 16.8 0.16 11.4 0.2 3.5 4 0 0 4 4 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|124028205|ref|YP_001013525.1| - 0.04 13.9 17.3 1.6 8.8 8.2 3.8 3 1 0 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|124028205|ref|YP_001013525.1| - 0.076 12.8 16.1 0.69 9.7 0.2 3.8 2 1 2 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein OrfB_Zn_ribbon PF07282.11 gi|124028205|ref|YP_001013525.1| - 0.08 12.9 9.6 0.09 12.7 0.5 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain NRDD PF13597.6 gi|124028205|ref|YP_001013525.1| - 0.083 11.7 6.4 0.97 8.1 0.1 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-TFIIB PF13453.6 gi|124028205|ref|YP_001013525.1| - 0.085 12.2 11.6 6.8 6.1 0.2 3.5 2 1 0 2 2 2 0 Transcription factor zinc-finger PhnA_Zn_Ribbon PF08274.12 gi|124028205|ref|YP_001013525.1| - 0.09 12.8 8.4 2.9 7.9 2.6 3.3 3 1 0 3 3 3 0 PhnA Zinc-Ribbon zf-CHY PF05495.12 gi|124028205|ref|YP_001013525.1| - 0.11 13.1 5.1 0.6 10.6 5.2 1.9 1 1 0 1 1 1 0 CHY zinc finger Rubredoxin_2 PF18073.1 gi|124028205|ref|YP_001013525.1| - 0.11 12.3 18.0 0.97 9.2 0.2 3.8 3 1 0 3 3 3 0 Rubredoxin metal binding domain zf-C2HC5 PF06221.13 gi|124028205|ref|YP_001013525.1| - 0.12 12.3 9.3 0.47 10.5 3.5 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-UDP PF14569.6 gi|124028205|ref|YP_001013525.1| - 0.13 12.4 5.4 0.15 12.2 5.4 1.1 1 0 0 1 1 1 0 Zinc-binding RING-finger PolC_DP2 PF03833.13 gi|124028205|ref|YP_001013525.1| - 0.19 9.6 2.1 0.21 9.4 2.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf_C2H2_10 PF18414.1 gi|124028205|ref|YP_001013525.1| - 0.22 11.1 7.5 2.2 7.9 0.5 2.7 3 0 0 3 3 2 0 C2H2 type zinc-finger zf-B_box PF00643.24 gi|124028205|ref|YP_001013525.1| - 0.29 11.3 6.2 2 8.6 3.3 2.6 2 1 0 2 2 2 0 B-box zinc finger tRNA-synt_1f PF01921.18 gi|124028205|ref|YP_001013525.1| - 0.33 9.8 1.2 0.43 9.5 1.2 1.4 1 1 0 1 1 1 0 tRNA synthetases class I (K) Zn-ribbon_8 PF09723.10 gi|124028205|ref|YP_001013525.1| - 0.37 10.9 15.8 0.14 12.3 1.7 3.3 1 1 3 4 4 4 0 Zinc ribbon domain zf_C2H2_13 PF18508.1 gi|124028205|ref|YP_001013525.1| - 0.48 10.1 0.1 0.48 10.1 0.1 3.0 3 0 0 3 3 3 0 Zinc finger domain DNA_RNApol_7kD PF03604.13 gi|124028205|ref|YP_001013525.1| - 0.58 9.9 13.4 0.44 10.3 0.6 3.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF1272 PF06906.11 gi|124028205|ref|YP_001013525.1| - 0.64 10.2 10.2 80 3.4 10.2 2.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Sgf11 PF08209.11 gi|124028205|ref|YP_001013525.1| - 0.98 9.0 14.5 1.5 8.4 0.6 3.7 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-tcix PF14952.6 gi|124028205|ref|YP_001013525.1| - 1.1 9.0 12.7 2.6 7.7 1.1 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_4 PF13717.6 gi|124028205|ref|YP_001013525.1| - 1.2 9.1 15.4 5.2 7.1 0.2 4.0 2 1 1 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.8 gi|124028205|ref|YP_001013525.1| - 1.2 9.0 14.9 5.2 7.0 0.1 3.9 3 1 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) A2L_zn_ribbon PF08792.10 gi|124028205|ref|YP_001013525.1| - 1.3 8.8 11.4 3.5 7.4 1.8 3.1 2 2 0 2 2 2 0 A2L zinc ribbon domain DUF2256 PF10013.9 gi|124028205|ref|YP_001013525.1| - 1.5 9.0 0.1 1.5 9.0 0.1 3.2 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) RNHCP PF12647.7 gi|124028205|ref|YP_001013525.1| - 1.7 8.7 9.8 15 5.7 0.5 3.1 1 1 2 3 3 3 0 RNHCP domain zf-Mss51 PF13824.6 gi|124028205|ref|YP_001013525.1| - 1.8 8.7 13.0 15 5.8 2.1 3.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 NMD3 PF04981.13 gi|124028205|ref|YP_001013525.1| - 2.3 7.6 7.4 2.9 7.3 7.4 1.1 1 0 0 1 1 1 0 NMD3 family zf-UBP PF02148.19 gi|124028205|ref|YP_001013525.1| - 2.4 8.5 6.8 10 6.5 0.6 2.5 2 1 1 3 3 3 0 Zn-finger in ubiquitin-hydrolases and other protein zf-C2H2 PF00096.26 gi|124028205|ref|YP_001013525.1| - 2.6 8.7 11.5 12 6.6 0.1 3.7 4 0 0 4 4 4 0 Zinc finger, C2H2 type Dynactin_p62 PF05502.13 gi|124028205|ref|YP_001013525.1| - 2.8 6.6 6.1 2.6 6.7 5.1 1.5 1 1 1 2 2 2 0 Dynactin p62 family Nudix_N_2 PF14803.6 gi|124028205|ref|YP_001013525.1| - 3.1 7.8 13.6 6.2 6.8 0.4 3.8 3 1 0 4 4 4 0 Nudix N-terminal zf-AN1 PF01428.16 gi|124028205|ref|YP_001013525.1| - 3.1 8.0 9.2 6.6 7.0 0.6 2.7 1 1 3 4 4 4 0 AN1-like Zinc finger PHD PF00628.29 gi|124028205|ref|YP_001013525.1| - 3.1 7.8 10.2 21 5.1 10.2 2.7 1 1 0 1 1 1 0 PHD-finger ZZ PF00569.17 gi|124028205|ref|YP_001013525.1| - 4.8 7.1 11.6 2.1 8.2 2.7 2.7 2 1 1 3 3 3 0 Zinc finger, ZZ type Prok-RING_1 PF14446.6 gi|124028205|ref|YP_001013525.1| - 4.9 7.2 10.9 0.6 10.1 2.2 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 ADK_lid PF05191.14 gi|124028205|ref|YP_001013525.1| - 5.2 7.2 9.7 7.5 6.6 0.4 3.4 3 1 0 3 3 3 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.12 gi|124028205|ref|YP_001013525.1| - 5.3 6.6 17.7 1.2 8.7 5.7 3.2 3 1 1 4 4 3 0 TFIIB zinc-binding DUF1451 PF07295.11 gi|124028205|ref|YP_001013525.1| - 5.6 7.0 7.1 13 5.9 3.1 2.1 1 1 0 2 2 2 0 Zinc-ribbon containing domain DUF2321 PF10083.9 gi|124028205|ref|YP_001013525.1| - 5.7 6.5 7.3 1.1 8.8 0.9 2.4 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2321) Ribosomal_L32p PF01783.23 gi|124028205|ref|YP_001013525.1| - 6.5 7.1 8.9 8.8 6.7 1.4 3.1 2 1 1 3 3 3 0 Ribosomal L32p protein family HscB_4_cys PF18256.1 gi|124028205|ref|YP_001013525.1| - 8.1 6.3 18.4 0.85 9.5 5.3 3.2 3 0 0 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif YhfH PF14149.6 gi|124028205|ref|YP_001013525.1| - 8.5 6.4 11.6 23 5.0 0.1 3.6 3 1 0 3 3 3 0 YhfH-like protein zf-ACC PF17848.1 gi|124028205|ref|YP_001013525.1| - 9.2 6.4 16.6 3.2 7.9 0.5 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain DUF981 PF06168.11 gi|124028206|ref|YP_001013526.1| - 0.016 15.2 4.5 0.016 15.2 4.5 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF981) HscB_4_cys PF18256.1 gi|124028207|ref|YP_001013527.1| - 0.076 12.8 1.2 0.24 11.2 0.5 2.1 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Glutaredoxin PF00462.24 gi|124028207|ref|YP_001013527.1| - 0.12 12.7 0.1 0.2 11.9 0.1 1.5 1 0 0 1 1 1 0 Glutaredoxin EF1_GNE PF00736.19 gi|124028209|ref|YP_001013529.1| - 2e-19 69.5 0.2 2.2e-19 69.4 0.2 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain AAA PF00004.29 gi|124028210|ref|YP_001013530.1| - 1e-97 323.6 0.0 1.3e-49 168.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|124028210|ref|YP_001013530.1| - 6.9e-37 125.0 4.8 4.8e-18 64.7 0.5 2.8 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|124028210|ref|YP_001013530.1| - 9.9e-34 115.4 4.2 4.9e-33 113.2 2.6 2.8 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|124028210|ref|YP_001013530.1| - 8.9e-17 60.6 1.3 2.1e-16 59.4 1.3 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|124028210|ref|YP_001013530.1| - 9.6e-16 57.9 0.0 4e-08 33.2 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|124028210|ref|YP_001013530.1| - 5.5e-14 52.7 0.0 3.8e-07 30.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|124028210|ref|YP_001013530.1| - 1.5e-12 48.2 2.5 6.9e-06 26.5 0.0 4.2 3 2 0 4 4 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|124028210|ref|YP_001013530.1| - 1.7e-11 44.2 0.8 8.9e-05 22.5 0.1 4.2 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|124028210|ref|YP_001013530.1| - 5e-11 43.0 1.1 0.0013 19.1 0.0 4.6 2 2 2 4 4 4 2 AAA domain AAA_14 PF13173.6 gi|124028210|ref|YP_001013530.1| - 2.1e-10 40.7 0.0 9e-05 22.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|124028210|ref|YP_001013530.1| - 3.8e-10 39.5 0.0 0.00049 19.4 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|124028210|ref|YP_001013530.1| - 2e-09 37.8 0.0 0.00093 19.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|124028210|ref|YP_001013530.1| - 2.9e-08 33.6 0.1 0.00033 20.6 0.0 2.9 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|124028210|ref|YP_001013530.1| - 3.6e-08 34.0 0.0 0.0041 17.6 0.0 2.9 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.17 gi|124028210|ref|YP_001013530.1| - 8.3e-08 32.2 0.0 0.011 15.4 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|124028210|ref|YP_001013530.1| - 1.5e-07 31.4 0.0 0.0045 16.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|124028210|ref|YP_001013530.1| - 1.8e-06 28.3 0.0 0.02 15.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|124028210|ref|YP_001013530.1| - 2.4e-06 27.1 0.8 0.068 12.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|124028210|ref|YP_001013530.1| - 2.8e-06 27.1 0.1 0.058 13.1 0.0 3.6 2 1 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.13 gi|124028210|ref|YP_001013530.1| - 5.4e-06 25.7 0.0 0.021 14.0 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|124028210|ref|YP_001013530.1| - 6.6e-06 26.5 0.0 0.081 13.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|124028210|ref|YP_001013530.1| - 9.2e-06 25.7 0.9 0.0068 16.4 0.1 3.5 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|124028210|ref|YP_001013530.1| - 1.5e-05 25.0 0.0 0.14 12.2 0.0 2.9 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|124028210|ref|YP_001013530.1| - 4.7e-05 22.8 0.0 0.3 10.3 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin ABC_tran PF00005.27 gi|124028210|ref|YP_001013530.1| - 7.5e-05 23.3 0.0 0.14 12.6 0.0 2.4 2 0 0 2 2 2 1 ABC transporter AAA_7 PF12775.7 gi|124028210|ref|YP_001013530.1| - 0.00016 21.3 0.0 0.54 9.7 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region ATPase PF06745.13 gi|124028210|ref|YP_001013530.1| - 0.00024 20.5 0.8 1.3 8.3 0.0 3.5 2 1 0 3 3 3 2 KaiC AAA_3 PF07726.11 gi|124028210|ref|YP_001013530.1| - 0.00042 20.2 0.0 0.29 11.0 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|124028210|ref|YP_001013530.1| - 0.00055 19.1 0.2 0.17 11.0 0.0 2.3 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 AAA_25 PF13481.6 gi|124028210|ref|YP_001013530.1| - 0.00057 19.5 4.6 2.1 7.9 0.0 4.0 3 1 0 4 4 4 2 AAA domain Bac_DnaA PF00308.18 gi|124028210|ref|YP_001013530.1| - 0.00069 19.5 0.0 0.14 12.0 0.0 3.0 2 2 0 2 2 2 1 Bacterial dnaA protein NB-ARC PF00931.22 gi|124028210|ref|YP_001013530.1| - 0.00098 18.4 0.0 0.22 10.7 0.0 2.7 3 0 0 3 3 3 1 NB-ARC domain NACHT PF05729.12 gi|124028210|ref|YP_001013530.1| - 0.0013 18.7 1.2 0.44 10.4 0.0 3.5 5 0 0 5 5 3 1 NACHT domain PhoH PF02562.16 gi|124028210|ref|YP_001013530.1| - 0.0014 18.1 1.3 0.26 10.7 0.1 2.8 3 0 0 3 3 3 1 PhoH-like protein AAA_17 PF13207.6 gi|124028210|ref|YP_001013530.1| - 0.0021 18.5 0.0 1.5 9.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain AFG1_ATPase PF03969.16 gi|124028210|ref|YP_001013530.1| - 0.0032 16.4 0.0 2.6 6.8 0.0 2.5 2 0 0 2 2 2 2 AFG1-like ATPase UFD1 PF03152.14 gi|124028210|ref|YP_001013530.1| - 0.0033 16.9 0.0 0.0072 15.8 0.0 1.5 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 Viral_helicase1 PF01443.18 gi|124028210|ref|YP_001013530.1| - 0.0077 16.0 0.0 0.56 9.9 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|124028210|ref|YP_001013530.1| - 0.012 14.8 0.0 3.4 6.8 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.15 gi|124028210|ref|YP_001013530.1| - 0.016 15.1 5.4 5.4 6.9 0.0 4.9 3 3 2 6 6 4 0 NTPase AAA_19 PF13245.6 gi|124028210|ref|YP_001013530.1| - 0.026 14.9 3.1 7.1 7.0 0.2 3.2 2 1 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|124028210|ref|YP_001013530.1| - 0.032 13.9 0.4 6.9 6.3 0.1 2.6 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.6 gi|124028210|ref|YP_001013530.1| - 0.036 14.2 0.0 8 6.6 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain ADSL_C PF10397.9 gi|124028210|ref|YP_001013530.1| - 0.056 14.0 3.4 9.7 6.8 0.2 3.2 3 0 0 3 3 2 0 Adenylosuccinate lyase C-terminus AAA_11 PF13086.6 gi|124028210|ref|YP_001013530.1| - 0.061 13.1 0.0 11 5.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|124028210|ref|YP_001013530.1| - 0.071 12.8 0.0 5.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Guanylate_kin PF00625.21 gi|124028210|ref|YP_001013530.1| - 0.074 12.7 0.3 30 4.2 0.0 3.5 2 2 2 4 4 4 0 Guanylate kinase IPT PF01745.16 gi|124028210|ref|YP_001013530.1| - 0.097 12.0 0.3 16 4.8 0.1 2.4 2 0 0 2 2 2 0 Isopentenyl transferase VPR PF00522.18 gi|124028210|ref|YP_001013530.1| - 0.12 12.4 0.0 15 5.7 0.0 2.5 2 0 0 2 2 2 0 VPR/VPX protein MMR_HSR1 PF01926.23 gi|124028210|ref|YP_001013530.1| - 0.18 11.9 0.0 7.1 6.8 0.0 2.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase ATP-synt_ab PF00006.25 gi|124028210|ref|YP_001013530.1| - 0.18 11.5 0.0 5.8 6.5 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PIN PF01850.21 gi|124028211|ref|YP_001013531.1| - 4.1e-17 62.8 0.0 4.9e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|124028211|ref|YP_001013531.1| - 0.0021 18.3 0.1 0.054 13.8 0.1 2.0 1 1 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|124028211|ref|YP_001013531.1| - 0.11 12.8 0.1 1.9 8.8 0.1 2.3 1 1 0 1 1 1 0 PIN domain MazE_antitoxin PF04014.18 gi|124028212|ref|YP_001013532.1| - 7.7e-14 51.2 0.5 1.1e-13 50.8 0.2 1.4 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|124028212|ref|YP_001013532.1| - 0.0016 18.8 0.2 0.0028 18.1 0.1 1.5 1 1 1 2 2 2 1 prlF antitoxin for toxin YhaV_toxin CDC48_N PF02359.18 gi|124028212|ref|YP_001013532.1| - 0.0034 17.5 2.1 0.7 10.1 1.6 2.2 1 1 1 2 2 2 2 Cell division protein 48 (CDC48), N-terminal domain PUA PF01472.20 gi|124028212|ref|YP_001013532.1| - 0.025 14.5 0.1 0.038 14.0 0.1 1.3 1 0 0 1 1 1 0 PUA domain eIF-1a PF01176.19 gi|124028212|ref|YP_001013532.1| - 0.041 13.7 1.2 0.66 9.8 0.1 2.2 1 1 1 2 2 2 0 Translation initiation factor 1A / IF-1 DUF1905 PF08922.11 gi|124028212|ref|YP_001013532.1| - 0.14 12.2 0.4 0.53 10.4 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) Chalcone_3 PF16036.5 gi|124028212|ref|YP_001013532.1| - 0.15 12.2 0.1 4.9 7.2 0.0 2.0 1 1 1 2 2 2 0 Chalcone isomerase-like MRP-S26 PF14943.6 gi|124028212|ref|YP_001013532.1| - 0.16 11.9 1.4 0.2 11.6 1.0 1.4 1 1 0 1 1 1 0 Mitochondrial ribosome subunit S26 APS_kinase PF01583.20 gi|124028214|ref|YP_001013534.1| - 1.6e-60 203.5 0.0 2e-60 203.3 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|124028214|ref|YP_001013534.1| - 5.6e-11 42.8 0.0 9.6e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|124028214|ref|YP_001013534.1| - 9.4e-09 35.1 0.0 1.1e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|124028214|ref|YP_001013534.1| - 4.1e-08 33.8 0.0 7.8e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|124028214|ref|YP_001013534.1| - 1.2e-05 25.8 0.0 2.7e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|124028214|ref|YP_001013534.1| - 0.00012 22.1 0.0 0.0003 20.8 0.0 1.7 2 0 0 2 2 2 1 NTPase Zeta_toxin PF06414.12 gi|124028214|ref|YP_001013534.1| - 0.00019 20.8 0.0 0.00031 20.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|124028214|ref|YP_001013534.1| - 0.00063 19.5 0.0 0.00087 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain SKI PF01202.22 gi|124028214|ref|YP_001013534.1| - 0.00079 19.6 0.1 0.0032 17.6 0.1 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_16 PF13191.6 gi|124028214|ref|YP_001013534.1| - 0.0023 18.4 0.0 0.003 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|124028214|ref|YP_001013534.1| - 0.0024 18.1 0.0 0.02 15.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|124028214|ref|YP_001013534.1| - 0.0028 18.1 0.0 0.0052 17.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CPT PF07931.12 gi|124028214|ref|YP_001013534.1| - 0.0043 16.9 0.1 0.067 13.0 0.1 2.3 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein Thymidylate_kin PF02223.17 gi|124028214|ref|YP_001013534.1| - 0.005 16.5 0.0 0.011 15.4 0.0 1.7 2 0 0 2 2 2 1 Thymidylate kinase MeaB PF03308.16 gi|124028214|ref|YP_001013534.1| - 0.0053 15.8 0.0 0.0085 15.1 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 gi|124028214|ref|YP_001013534.1| - 0.056 13.5 0.0 0.071 13.2 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.14 gi|124028214|ref|YP_001013534.1| - 0.073 13.1 0.1 0.11 12.5 0.1 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|124028214|ref|YP_001013534.1| - 0.079 12.1 0.0 0.079 12.1 0.0 1.3 1 1 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.27 gi|124028214|ref|YP_001013534.1| - 0.092 13.3 0.0 0.15 12.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_25 PF13481.6 gi|124028214|ref|YP_001013534.1| - 0.13 11.8 0.1 0.32 10.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|124028214|ref|YP_001013534.1| - 0.17 11.7 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|124028214|ref|YP_001013534.1| - 0.17 11.5 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ParA PF10609.9 gi|124028214|ref|YP_001013534.1| - 0.2 11.1 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase EamA PF00892.20 gi|124028215|ref|YP_001013535.1| - 7e-10 39.2 16.9 8.1e-10 39.0 16.9 1.1 1 0 0 1 1 1 1 EamA-like transporter family Multi_Drug_Res PF00893.19 gi|124028215|ref|YP_001013535.1| - 0.013 16.1 5.0 0.013 16.1 5.0 1.8 1 1 1 2 2 2 0 Small Multidrug Resistance protein XPG_I PF00867.18 gi|124028216|ref|YP_001013536.1| - 3.2e-27 94.7 0.0 5.4e-27 94.0 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|124028216|ref|YP_001013536.1| - 6.8e-20 71.4 0.0 1.3e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|124028216|ref|YP_001013536.1| - 0.0057 17.2 0.0 0.019 15.6 0.0 1.9 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold DUF4878 PF12870.7 gi|124028216|ref|YP_001013536.1| - 0.012 15.9 0.5 0.024 15.0 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) HHH_5 PF14520.6 gi|124028216|ref|YP_001013536.1| - 0.015 15.8 0.1 0.077 13.6 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain 5_3_exonuc_N PF02739.16 gi|124028216|ref|YP_001013536.1| - 0.025 14.5 0.2 0.1 12.5 0.1 1.9 1 1 0 2 2 2 0 5'-3' exonuclease, N-terminal resolvase-like domain DUF531 PF04407.12 gi|124028216|ref|YP_001013536.1| - 0.061 13.4 0.0 0.096 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF531) baeRF_family10 PF18854.1 gi|124028216|ref|YP_001013536.1| - 0.59 10.4 4.1 0.58 10.4 2.7 1.6 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 Put_DNA-bind_N PF06971.13 gi|124028217|ref|YP_001013537.1| - 0.021 14.8 0.0 1.8 8.6 0.0 2.3 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus NiFeSe_Hases PF00374.19 gi|124028218|ref|YP_001013538.1| - 5.7e-52 177.2 0.0 1.5e-31 109.8 0.0 3.8 1 1 0 3 3 3 3 Nickel-dependent hydrogenase Fer4_8 PF13183.6 gi|124028219|ref|YP_001013539.1| - 4.1e-10 40.0 1.4 4.1e-10 40.0 1.4 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|124028219|ref|YP_001013539.1| - 1.3e-09 38.5 2.4 1.3e-09 38.5 2.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|124028219|ref|YP_001013539.1| - 9.5e-08 32.5 7.1 9.5e-08 32.5 7.1 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|124028219|ref|YP_001013539.1| - 2e-06 27.9 14.8 6.2e-06 26.3 6.6 3.1 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124028219|ref|YP_001013539.1| - 2e-06 27.6 11.9 0.0073 16.3 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|124028219|ref|YP_001013539.1| - 5.6e-06 26.4 7.5 5.6e-06 26.4 7.5 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124028219|ref|YP_001013539.1| - 8.6e-06 26.6 6.2 8.6e-06 26.6 6.2 2.6 2 2 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|124028219|ref|YP_001013539.1| - 1.1e-05 25.0 20.1 0.00017 21.2 4.0 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain CCG PF02754.16 gi|124028219|ref|YP_001013539.1| - 9.5e-05 22.5 2.2 0.00094 19.4 0.0 3.4 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_21 PF14697.6 gi|124028219|ref|YP_001013539.1| - 0.00021 21.3 7.0 0.042 14.0 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124028219|ref|YP_001013539.1| - 0.00073 19.5 18.8 0.0042 17.1 2.4 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|124028219|ref|YP_001013539.1| - 0.0022 18.1 1.1 0.27 11.4 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124028219|ref|YP_001013539.1| - 0.0033 17.8 2.2 0.0033 17.8 2.2 3.4 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|124028219|ref|YP_001013539.1| - 0.0074 16.8 6.9 0.35 11.4 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|124028219|ref|YP_001013539.1| - 0.013 16.2 2.7 0.74 10.6 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|124028219|ref|YP_001013539.1| - 0.068 14.1 17.3 0.86 10.7 3.7 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|124028219|ref|YP_001013539.1| - 0.21 12.5 0.1 0.21 12.5 0.1 3.1 4 0 0 4 4 2 0 4Fe-4S dicluster domain NiFe_hyd_SSU_C PF14720.6 gi|124028221|ref|YP_001013541.1| - 3.6e-23 81.7 0.7 6.3e-23 80.9 0.7 1.4 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|124028221|ref|YP_001013541.1| - 1.4e-09 37.9 0.0 2.3e-07 30.7 0.0 3.3 2 1 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|124028221|ref|YP_001013541.1| - 0.0052 16.6 1.9 0.0052 16.6 1.9 3.2 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence HycI PF01750.18 gi|124028222|ref|YP_001013542.1| - 0.12 12.2 0.0 0.32 10.8 0.0 1.6 1 1 0 1 1 1 0 Hydrogenase maturation protease PTS_2-RNA PF01885.16 gi|124028223|ref|YP_001013543.1| - 3.5e-31 108.7 0.0 4e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 gi|124028223|ref|YP_001013543.1| - 0.0059 16.2 0.0 0.0087 15.7 0.0 1.2 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase catalytic domain DiSB-ORF2_chro PF16506.5 gi|124028223|ref|YP_001013543.1| - 0.12 12.3 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Putative virion glycoprotein of insect viruses Mem_trans PF03547.18 gi|124028224|ref|YP_001013544.1| - 0.0031 16.0 8.4 0.0031 16.0 8.4 2.1 2 0 0 2 2 2 2 Membrane transport protein adh_short_C2 PF13561.6 gi|124028225|ref|YP_001013545.1| - 1.8e-38 132.4 0.0 2.7e-38 131.8 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|124028225|ref|YP_001013545.1| - 2.6e-30 105.3 0.0 3.3e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|124028225|ref|YP_001013545.1| - 0.00019 21.4 0.0 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 KR domain HTH_AsnC-type PF13404.6 gi|124028225|ref|YP_001013545.1| - 0.075 12.9 0.0 0.24 11.2 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Reeler PF02014.16 gi|124028226|ref|YP_001013546.1| - 0.00044 21.0 3.4 0.00047 20.9 0.2 2.3 2 1 0 2 2 2 1 Reeler domain RIFIN PF02009.16 gi|124028226|ref|YP_001013546.1| - 0.0073 16.2 0.8 0.0073 16.2 0.8 1.3 1 1 0 1 1 1 1 Rifin DUF3439 PF11921.8 gi|124028226|ref|YP_001013546.1| - 0.018 15.0 4.7 0.04 13.9 4.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) SSP160 PF06933.11 gi|124028226|ref|YP_001013546.1| - 0.25 9.5 6.1 0.38 8.9 6.1 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Dicty_REP PF05086.12 gi|124028226|ref|YP_001013546.1| - 0.61 8.0 4.2 0.79 7.6 4.2 1.0 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein DUF5113 PF17140.4 gi|124028226|ref|YP_001013546.1| - 1.6 8.5 3.0 0.74 9.6 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5113) ODV-E18 PF10717.9 gi|124028226|ref|YP_001013546.1| - 1.8 8.5 7.4 5.7 6.9 5.4 2.2 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 DUF4448 PF14610.6 gi|124028226|ref|YP_001013546.1| - 8.1 6.2 7.2 0.66 9.7 1.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF4448) Fer4 PF00037.27 gi|124028227|ref|YP_001013547.1| - 0.00064 19.4 10.3 0.0053 16.5 2.9 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|124028227|ref|YP_001013547.1| - 0.017 15.9 0.5 0.047 14.4 0.1 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|124028227|ref|YP_001013547.1| - 0.026 14.6 9.8 0.062 13.4 1.2 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|124028227|ref|YP_001013547.1| - 0.032 14.3 0.1 0.032 14.3 0.1 2.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124028227|ref|YP_001013547.1| - 0.13 12.4 12.3 0.22 11.7 2.4 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|124028227|ref|YP_001013547.1| - 0.16 12.5 0.7 0.16 12.5 0.7 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|124028227|ref|YP_001013547.1| - 0.39 11.3 2.0 0.9 10.1 2.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|124028227|ref|YP_001013547.1| - 0.49 10.6 7.3 0.38 10.9 4.5 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|124028227|ref|YP_001013547.1| - 0.62 10.7 9.8 1.5 9.5 6.0 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124028227|ref|YP_001013547.1| - 5.1 8.1 7.4 18 6.3 3.8 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.22 gi|124028229|ref|YP_001013549.1| - 2.5e-49 168.4 0.0 1.4e-48 165.9 0.0 2.2 2 1 0 2 2 2 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|124028229|ref|YP_001013549.1| - 6e-24 84.2 0.0 1.8e-23 82.7 0.0 1.9 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|124028229|ref|YP_001013549.1| - 2.7e-07 30.5 0.4 1e-06 28.6 0.4 1.9 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain FMN_dh PF01070.18 gi|124028229|ref|YP_001013549.1| - 0.00047 19.3 0.5 0.026 13.6 0.2 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase TAT_signal PF10518.9 gi|124028229|ref|YP_001013549.1| - 0.024 14.5 1.8 0.048 13.5 1.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_6 PF12837.7 gi|124028230|ref|YP_001013550.1| - 1.8e-15 56.3 31.2 1.3e-05 25.1 3.0 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|124028230|ref|YP_001013550.1| - 5.9e-15 55.6 41.0 2e-06 28.3 9.6 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124028230|ref|YP_001013550.1| - 1.3e-14 54.0 14.7 6.6e-09 35.8 2.1 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|124028230|ref|YP_001013550.1| - 4.4e-12 45.3 40.3 0.00011 21.9 3.7 5.4 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|124028230|ref|YP_001013550.1| - 5.7e-12 45.6 24.3 2.4e-06 27.5 7.1 3.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|124028230|ref|YP_001013550.1| - 1.1e-09 38.6 21.4 5.1e-05 23.6 8.1 3.2 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124028230|ref|YP_001013550.1| - 1.2e-09 37.9 30.2 0.033 14.7 2.6 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|124028230|ref|YP_001013550.1| - 1.4e-09 37.4 35.3 0.013 15.6 1.6 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|124028230|ref|YP_001013550.1| - 2e-09 37.5 26.3 2.1e-05 24.6 8.4 3.6 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124028230|ref|YP_001013550.1| - 1.3e-08 35.6 23.6 0.0021 19.0 1.4 4.5 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|124028230|ref|YP_001013550.1| - 3.2e-08 34.0 20.6 0.00044 20.7 6.4 3.6 2 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|124028230|ref|YP_001013550.1| - 6.9e-07 29.8 40.7 0.0053 17.6 5.8 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_18 PF13746.6 gi|124028230|ref|YP_001013550.1| - 3.9e-05 23.8 15.6 0.16 12.2 1.0 4.2 4 0 0 4 4 4 3 4Fe-4S dicluster domain TAT_signal PF10518.9 gi|124028230|ref|YP_001013550.1| - 0.00019 21.1 1.9 0.00036 20.3 1.9 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.6 gi|124028230|ref|YP_001013550.1| - 0.017 15.3 7.3 0.055 13.6 7.3 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|124028230|ref|YP_001013550.1| - 2.3 8.8 25.8 5.5 7.6 0.9 4.6 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_5 PF12801.7 gi|124028231|ref|YP_001013551.1| - 2e-12 46.9 6.8 5.3e-10 39.1 0.9 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|124028231|ref|YP_001013551.1| - 1.9e-10 41.1 7.0 5.8e-05 23.6 0.3 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|124028231|ref|YP_001013551.1| - 3.2e-09 36.2 15.5 5.4e-05 22.8 1.2 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|124028231|ref|YP_001013551.1| - 5.3e-08 32.9 8.2 5.3e-08 32.9 8.2 2.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|124028231|ref|YP_001013551.1| - 3.9e-07 30.1 21.4 4.6e-06 26.6 11.4 2.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124028231|ref|YP_001013551.1| - 5.9e-06 26.1 14.3 0.0042 17.1 2.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|124028231|ref|YP_001013551.1| - 1e-05 25.9 13.8 0.01 16.3 4.3 3.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|124028231|ref|YP_001013551.1| - 0.00012 22.4 12.7 0.021 15.3 0.2 3.0 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124028231|ref|YP_001013551.1| - 0.00017 21.6 18.5 0.019 15.1 6.9 3.6 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124028231|ref|YP_001013551.1| - 0.0012 19.2 18.8 0.0075 16.7 1.4 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|124028231|ref|YP_001013551.1| - 0.0035 18.3 17.4 0.0043 18.0 0.3 3.3 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|124028231|ref|YP_001013551.1| - 0.016 15.4 8.6 0.016 15.4 8.6 3.0 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|124028231|ref|YP_001013551.1| - 0.019 15.8 7.3 0.85 10.5 1.4 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124028231|ref|YP_001013551.1| - 0.02 15.0 2.1 0.02 15.0 2.1 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|124028231|ref|YP_001013551.1| - 0.022 15.7 5.2 0.022 15.7 5.2 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|124028231|ref|YP_001013551.1| - 0.8 9.5 9.8 0.39 10.5 0.3 3.0 2 1 1 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NapD PF03927.13 gi|124028232|ref|YP_001013552.1| - 0.0013 18.8 0.0 0.0018 18.3 0.0 1.2 1 0 0 1 1 1 1 NapD protein DUF4127 PF13552.6 gi|124028232|ref|YP_001013552.1| - 0.046 12.3 0.0 0.05 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) Exonuc_VII_S PF02609.16 gi|124028232|ref|YP_001013552.1| - 0.065 13.3 0.3 0.34 11.0 0.1 2.1 2 0 0 2 2 2 0 Exonuclease VII small subunit Acetyltransf_10 PF13673.7 gi|124028233|ref|YP_001013553.1| - 4.6e-10 39.5 0.0 5.4e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|124028233|ref|YP_001013553.1| - 4.8e-10 39.7 0.0 5.4e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|124028233|ref|YP_001013553.1| - 8e-10 39.0 0.0 9.6e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|124028233|ref|YP_001013553.1| - 5.8e-05 23.0 0.3 0.00012 21.9 0.3 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|124028233|ref|YP_001013553.1| - 0.00066 19.8 0.0 0.00078 19.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|124028233|ref|YP_001013553.1| - 0.025 14.7 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase NodA PF02474.15 gi|124028233|ref|YP_001013553.1| - 0.027 14.2 0.0 0.033 13.9 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein A (NodA) Acetyltransf_8 PF13523.6 gi|124028233|ref|YP_001013553.1| - 0.051 13.2 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M55 PF04951.13 gi|124028234|ref|YP_001013554.1| - 2e-90 302.8 0.0 2.3e-90 302.6 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase acVLRF1 PF18859.1 gi|124028234|ref|YP_001013554.1| - 0.087 13.1 0.5 0.59 10.4 0.1 2.0 1 1 1 2 2 2 0 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family2 PF18844.1 gi|124028234|ref|YP_001013554.1| - 0.63 10.1 2.7 5.7 7.0 2.2 2.3 1 1 1 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 ALAD PF00490.21 gi|124028236|ref|YP_001013556.1| - 1.2e-139 464.9 0.0 1.4e-139 464.7 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Se-cys_synth_N PF12390.8 gi|124028236|ref|YP_001013556.1| - 1 9.7 3.6 2.5 8.4 0.1 3.1 4 0 0 4 4 4 0 Selenocysteine synthase N terminal Multi-haem_cyto PF13447.6 gi|124028238|ref|YP_001013558.1| - 1.1e-23 83.8 6.3 2.6e-19 69.5 1.1 4.0 4 0 0 4 4 3 2 Seven times multi-haem cytochrome CxxCH Cytochrome_C7 PF14522.6 gi|124028238|ref|YP_001013558.1| - 9e-12 44.8 8.1 0.0011 19.0 0.0 5.4 4 1 1 5 5 5 2 Cytochrome c7 and related cytochrome c Laminin_I PF06008.14 gi|124028238|ref|YP_001013558.1| - 2e-05 24.4 8.5 4.5e-05 23.3 8.5 1.5 1 0 0 1 1 1 1 Laminin Domain I Laminin_II PF06009.12 gi|124028238|ref|YP_001013558.1| - 2.2e-05 24.5 10.3 4.9e-05 23.4 4.5 2.3 1 1 1 2 2 2 1 Laminin Domain II EzrA PF06160.12 gi|124028238|ref|YP_001013558.1| - 3.6e-05 22.2 2.7 6.4e-05 21.3 2.7 1.3 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA FlaC_arch PF05377.11 gi|124028238|ref|YP_001013558.1| - 4.3e-05 23.8 6.7 0.24 11.8 0.1 3.9 3 0 0 3 3 3 1 Flagella accessory protein C (FlaC) DUF812 PF05667.11 gi|124028238|ref|YP_001013558.1| - 4.7e-05 22.5 7.7 9e-05 21.6 7.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF812) CENP-F_leu_zip PF10473.9 gi|124028238|ref|YP_001013558.1| - 7.9e-05 22.7 14.0 0.00047 20.2 10.6 2.6 1 1 2 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.6 gi|124028238|ref|YP_001013558.1| - 9.7e-05 21.8 8.3 0.0002 20.8 8.3 1.5 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Cytochrom_c3_2 PF14537.6 gi|124028238|ref|YP_001013558.1| - 0.00016 22.1 21.7 0.023 15.1 1.1 5.4 3 2 1 4 4 4 1 Cytochrome c3 Lectin_N PF03954.14 gi|124028238|ref|YP_001013558.1| - 0.00016 21.4 3.7 0.00016 21.4 3.7 2.1 1 1 1 2 2 1 1 Hepatic lectin, N-terminal domain Lebercilin PF15619.6 gi|124028238|ref|YP_001013558.1| - 0.00024 20.8 6.5 0.00056 19.6 6.5 1.5 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Fib_alpha PF08702.10 gi|124028238|ref|YP_001013558.1| - 0.00027 21.2 7.1 0.027 14.6 2.0 2.4 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family Paired_CXXCH_1 PF09699.10 gi|124028238|ref|YP_001013558.1| - 0.00031 20.4 27.0 5.4 6.8 4.6 7.4 7 1 0 7 7 7 0 Doubled CXXCH motif (Paired_CXXCH_1) DUF1664 PF07889.12 gi|124028238|ref|YP_001013558.1| - 0.00032 20.7 7.6 0.01 15.9 0.6 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|124028238|ref|YP_001013558.1| - 0.00038 20.9 13.5 0.096 13.2 5.6 3.7 1 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Phage_GP20 PF06810.11 gi|124028238|ref|YP_001013558.1| - 0.00061 19.6 12.6 0.0087 15.9 3.4 2.7 1 1 1 2 2 2 1 Phage minor structural protein GP20 Uds1 PF15456.6 gi|124028238|ref|YP_001013558.1| - 0.00062 19.9 6.3 0.022 14.9 2.0 2.3 2 0 0 2 2 2 1 Up-regulated During Septation BLOC1_2 PF10046.9 gi|124028238|ref|YP_001013558.1| - 0.00082 19.6 14.0 0.22 11.9 1.7 3.7 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4201 PF13870.6 gi|124028238|ref|YP_001013558.1| - 0.00083 19.1 2.7 0.0019 18.0 2.6 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) Sec34 PF04136.15 gi|124028238|ref|YP_001013558.1| - 0.0009 19.1 8.3 0.088 12.7 1.2 2.6 1 1 1 2 2 2 2 Sec34-like family DUF4407 PF14362.6 gi|124028238|ref|YP_001013558.1| - 0.00094 18.6 9.5 0.0016 17.8 9.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) MAD PF05557.13 gi|124028238|ref|YP_001013558.1| - 0.0011 17.5 2.8 0.0011 17.5 2.8 1.7 1 1 0 1 1 1 1 Mitotic checkpoint protein FPP PF05911.11 gi|124028238|ref|YP_001013558.1| - 0.0012 17.2 10.6 0.0017 16.7 10.6 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil SHE3 PF17078.5 gi|124028238|ref|YP_001013558.1| - 0.0013 18.4 2.1 0.0033 17.2 2.1 1.6 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 Spc7 PF08317.11 gi|124028238|ref|YP_001013558.1| - 0.0015 17.5 14.1 0.0068 15.3 14.1 1.9 1 1 0 1 1 1 1 Spc7 kinetochore protein KASH_CCD PF14662.6 gi|124028238|ref|YP_001013558.1| - 0.0017 18.2 9.9 0.0017 18.2 9.9 1.6 2 0 0 2 2 1 1 Coiled-coil region of CCDC155 or KASH ATG16 PF08614.11 gi|124028238|ref|YP_001013558.1| - 0.002 18.4 10.1 0.002 18.4 10.1 1.9 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) Baculo_PEP_C PF04513.12 gi|124028238|ref|YP_001013558.1| - 0.0021 18.1 13.7 0.049 13.7 1.5 2.9 2 1 1 3 3 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus FlxA PF14282.6 gi|124028238|ref|YP_001013558.1| - 0.0027 17.7 22.7 0.14 12.1 9.8 2.7 1 1 1 2 2 2 2 FlxA-like protein CCDC154 PF15450.6 gi|124028238|ref|YP_001013558.1| - 0.0032 16.1 6.3 0.0049 15.5 6.3 1.2 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 154 DUF724 PF05266.14 gi|124028238|ref|YP_001013558.1| - 0.0035 17.2 7.7 0.14 11.9 0.2 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF724) CENP-Q PF13094.6 gi|124028238|ref|YP_001013558.1| - 0.0036 17.5 9.2 0.0074 16.5 9.2 1.5 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit Seryl_tRNA_N PF02403.22 gi|124028238|ref|YP_001013558.1| - 0.0047 17.1 14.6 0.074 13.3 4.5 3.0 1 1 2 3 3 3 1 Seryl-tRNA synthetase N-terminal domain MbeD_MobD PF04899.12 gi|124028238|ref|YP_001013558.1| - 0.0049 16.9 10.8 0.083 13.0 1.1 3.4 2 1 2 4 4 2 1 MbeD/MobD like JIP_LZII PF16471.5 gi|124028238|ref|YP_001013558.1| - 0.0056 16.8 8.3 0.12 12.6 0.1 3.2 4 0 0 4 4 2 1 JNK-interacting protein leucine zipper II PspA_IM30 PF04012.12 gi|124028238|ref|YP_001013558.1| - 0.0064 16.1 19.4 0.043 13.4 8.7 2.5 1 1 1 2 2 2 1 PspA/IM30 family HOOK PF05622.12 gi|124028238|ref|YP_001013558.1| - 0.0066 14.7 9.4 0.01 14.1 9.4 1.2 1 0 0 1 1 1 1 HOOK protein HemX PF04375.14 gi|124028238|ref|YP_001013558.1| - 0.0067 15.8 7.1 0.0067 15.8 7.1 2.5 2 1 1 3 3 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase PI3K_P85_iSH2 PF16454.5 gi|124028238|ref|YP_001013558.1| - 0.0071 16.0 1.8 0.0071 16.0 1.8 1.7 1 1 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2353 PF09789.9 gi|124028238|ref|YP_001013558.1| - 0.0087 15.5 3.1 0.014 14.8 3.1 1.2 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) TPR_MLP1_2 PF07926.12 gi|124028238|ref|YP_001013558.1| - 0.0091 16.1 7.4 0.0091 16.1 7.4 2.8 2 1 1 3 3 2 1 TPR/MLP1/MLP2-like protein Prominin PF05478.11 gi|124028238|ref|YP_001013558.1| - 0.01 13.8 1.7 0.017 13.1 1.7 1.2 1 0 0 1 1 1 0 Prominin DUF948 PF06103.11 gi|124028238|ref|YP_001013558.1| - 0.012 15.9 8.5 0.87 9.9 0.7 3.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) TMF_TATA_bd PF12325.8 gi|124028238|ref|YP_001013558.1| - 0.013 15.7 16.5 0.016 15.5 2.8 3.3 2 1 1 3 3 2 0 TATA element modulatory factor 1 TATA binding Bap31_Bap29_C PF18035.1 gi|124028238|ref|YP_001013558.1| - 0.014 15.4 1.8 0.014 15.4 1.8 3.0 1 1 1 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain Syntaxin-6_N PF09177.11 gi|124028238|ref|YP_001013558.1| - 0.014 15.9 7.6 20 5.8 7.7 3.2 1 1 0 1 1 1 0 Syntaxin 6, N-terminal T4SS PF07996.11 gi|124028238|ref|YP_001013558.1| - 0.015 15.7 11.4 0.081 13.3 12.1 1.8 2 0 0 2 2 1 0 Type IV secretion system proteins CALCOCO1 PF07888.11 gi|124028238|ref|YP_001013558.1| - 0.017 14.0 7.8 0.029 13.2 7.8 1.3 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like ADIP PF11559.8 gi|124028238|ref|YP_001013558.1| - 0.017 15.2 3.1 0.017 15.2 3.1 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF4200 PF13863.6 gi|124028238|ref|YP_001013558.1| - 0.018 15.5 10.0 0.085 13.3 0.8 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF2730 PF10805.8 gi|124028238|ref|YP_001013558.1| - 0.019 15.0 8.6 0.84 9.8 1.8 2.9 1 1 0 2 2 2 0 Protein of unknown function (DUF2730) DUF4763 PF15960.5 gi|124028238|ref|YP_001013558.1| - 0.02 14.2 8.5 0.053 12.8 8.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) FapA PF03961.13 gi|124028238|ref|YP_001013558.1| - 0.022 13.4 9.6 0.12 10.9 0.4 2.1 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF4988 PF16378.5 gi|124028238|ref|YP_001013558.1| - 0.023 14.4 2.6 0.5 10.0 0.1 2.7 1 1 1 2 2 2 0 Domain of unknown function Tropomyosin_1 PF12718.7 gi|124028238|ref|YP_001013558.1| - 0.023 14.9 9.6 0.062 13.4 9.6 1.7 1 0 0 1 1 1 0 Tropomyosin like ABC_tran_CTD PF16326.5 gi|124028238|ref|YP_001013558.1| - 0.025 14.8 22.2 0.062 13.6 2.1 4.3 2 1 2 4 4 3 0 ABC transporter C-terminal domain V_ATPase_I PF01496.19 gi|124028238|ref|YP_001013558.1| - 0.025 12.5 1.3 0.037 11.9 1.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2203 PF09969.9 gi|124028238|ref|YP_001013558.1| - 0.026 15.3 8.8 0.3 11.8 2.2 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF3450 PF11932.8 gi|124028238|ref|YP_001013558.1| - 0.029 13.7 16.2 0.043 13.1 13.5 2.3 2 1 0 2 2 1 0 Protein of unknown function (DUF3450) Fez1 PF06818.15 gi|124028238|ref|YP_001013558.1| - 0.03 14.8 7.1 0.064 13.7 7.1 1.5 1 0 0 1 1 1 0 Fez1 Dynamitin PF04912.14 gi|124028238|ref|YP_001013558.1| - 0.034 13.5 15.9 0.11 11.8 10.5 2.1 1 1 1 2 2 2 0 Dynamitin DUF3584 PF12128.8 gi|124028238|ref|YP_001013558.1| - 0.036 11.6 12.1 0.0043 14.7 4.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) HCMV_UL139 PF12507.8 gi|124028238|ref|YP_001013558.1| - 0.038 14.4 0.3 0.093 13.1 0.2 1.8 1 1 0 1 1 1 0 Human Cytomegalovirus UL139 protein DivIC PF04977.15 gi|124028238|ref|YP_001013558.1| - 0.038 13.7 12.8 0.027 14.2 3.3 3.1 1 1 1 2 2 2 0 Septum formation initiator WEMBL PF05701.11 gi|124028238|ref|YP_001013558.1| - 0.04 12.6 10.9 0.059 12.1 10.9 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Cast PF10174.9 gi|124028238|ref|YP_001013558.1| - 0.042 12.1 7.8 0.061 11.5 7.8 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Nup54 PF13874.6 gi|124028238|ref|YP_001013558.1| - 0.043 13.9 9.3 1 9.5 0.6 2.5 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Exonuc_VII_L PF02601.15 gi|124028238|ref|YP_001013558.1| - 0.046 13.3 4.9 0.076 12.6 4.9 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit GOLGA2L5 PF15070.6 gi|124028238|ref|YP_001013558.1| - 0.049 12.3 9.5 0.077 11.6 9.5 1.2 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 PLU-1 PF08429.11 gi|124028238|ref|YP_001013558.1| - 0.051 12.7 8.5 0.17 11.0 8.5 1.8 1 1 0 1 1 1 0 PLU-1-like protein DUF16 PF01519.16 gi|124028238|ref|YP_001013558.1| - 0.054 14.0 10.1 0.27 11.7 1.4 2.8 2 1 1 3 3 2 0 Protein of unknown function DUF16 Myosin_tail_1 PF01576.19 gi|124028238|ref|YP_001013558.1| - 0.054 11.3 7.3 0.08 10.7 7.3 1.1 1 0 0 1 1 1 0 Myosin tail HSBP1 PF06825.12 gi|124028238|ref|YP_001013558.1| - 0.059 13.2 2.1 2.4 8.1 0.0 3.7 4 0 0 4 4 2 0 Heat shock factor binding protein 1 Dynactin_p22 PF07426.11 gi|124028238|ref|YP_001013558.1| - 0.063 13.1 11.6 0.024 14.5 5.0 2.4 1 1 2 3 3 3 0 Dynactin subunit p22 DUF713 PF05218.14 gi|124028238|ref|YP_001013558.1| - 0.065 13.0 0.8 0.12 12.1 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF713) YabA PF06156.13 gi|124028238|ref|YP_001013558.1| - 0.069 13.8 7.5 2.8 8.6 1.2 2.9 1 1 1 2 2 2 0 Initiation control protein YabA Oxidored_q2 PF00420.24 gi|124028238|ref|YP_001013558.1| - 0.071 12.8 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APG6_N PF17675.1 gi|124028238|ref|YP_001013558.1| - 0.071 13.6 20.5 0.062 13.8 11.3 2.7 1 1 1 2 2 2 0 Apg6 coiled-coil region DASH_Hsk3 PF08227.11 gi|124028238|ref|YP_001013558.1| - 0.083 13.3 14.8 0.46 10.9 0.9 3.4 3 0 0 3 3 2 0 DASH complex subunit Hsk3 like HMMR_N PF15905.5 gi|124028238|ref|YP_001013558.1| - 0.085 12.3 10.4 0.13 11.7 10.4 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Cnn_1N PF07989.11 gi|124028238|ref|YP_001013558.1| - 0.086 13.0 9.6 0.046 13.9 3.8 2.9 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 Golgin_A5 PF09787.9 gi|124028238|ref|YP_001013558.1| - 0.1 12.0 7.1 0.2 11.1 7.1 1.4 1 0 0 1 1 1 0 Golgin subfamily A member 5 TMPIT PF07851.13 gi|124028238|ref|YP_001013558.1| - 0.11 11.7 6.0 0.17 11.1 4.5 1.8 1 1 1 2 2 2 0 TMPIT-like protein TolA_bind_tri PF16331.5 gi|124028238|ref|YP_001013558.1| - 0.11 12.6 10.7 3.3 7.8 10.1 2.8 1 1 0 1 1 1 0 TolA binding protein trimerisation BRE1 PF08647.11 gi|124028238|ref|YP_001013558.1| - 0.12 12.4 12.5 0.044 13.9 8.1 2.5 2 1 0 2 2 1 0 BRE1 E3 ubiquitin ligase TF_AP-2 PF03299.14 gi|124028238|ref|YP_001013558.1| - 0.13 12.3 1.1 0.23 11.4 1.1 1.3 1 0 0 1 1 1 0 Transcription factor AP-2 TMF_DNA_bd PF12329.8 gi|124028238|ref|YP_001013558.1| - 0.13 12.3 19.0 0.026 14.5 7.4 3.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.12 gi|124028238|ref|YP_001013558.1| - 0.13 12.9 15.5 1.8 9.2 0.9 3.5 1 1 2 3 3 3 0 SlyX MutS_IV PF05190.18 gi|124028238|ref|YP_001013558.1| - 0.13 12.6 0.8 0.87 10.0 0.1 2.7 1 1 1 2 2 1 0 MutS family domain IV LMBR1 PF04791.16 gi|124028238|ref|YP_001013558.1| - 0.14 11.0 0.2 0.23 10.3 0.2 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Filament PF00038.21 gi|124028238|ref|YP_001013558.1| - 0.15 11.6 8.9 8.9 5.8 8.2 2.3 1 1 0 1 1 1 0 Intermediate filament protein Leu_zip PF15294.6 gi|124028238|ref|YP_001013558.1| - 0.15 11.6 6.7 0.33 10.4 6.7 1.5 1 0 0 1 1 1 0 Leucine zipper End3 PF12761.7 gi|124028238|ref|YP_001013558.1| - 0.15 12.2 6.3 0.26 11.4 6.3 1.3 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 IFT57 PF10498.9 gi|124028238|ref|YP_001013558.1| - 0.15 11.0 6.3 0.38 9.7 6.3 1.6 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Spectrin PF00435.21 gi|124028238|ref|YP_001013558.1| - 0.16 12.4 12.7 1.5 9.3 3.6 3.0 1 1 1 2 2 2 0 Spectrin repeat TSC22 PF01166.18 gi|124028238|ref|YP_001013558.1| - 0.17 12.3 6.7 1.8 8.9 0.0 4.1 4 1 1 5 5 2 0 TSC-22/dip/bun family Allexi_40kDa PF05549.11 gi|124028238|ref|YP_001013558.1| - 0.18 11.3 6.1 1 8.8 2.8 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein ZapB PF06005.12 gi|124028238|ref|YP_001013558.1| - 0.19 12.2 20.5 0.22 12.0 6.1 3.6 2 1 1 3 3 2 0 Cell division protein ZapB CHDCT2 PF08074.11 gi|124028238|ref|YP_001013558.1| - 0.2 11.8 0.7 0.37 10.9 0.7 1.4 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain LPP PF04728.13 gi|124028238|ref|YP_001013558.1| - 0.2 12.0 22.7 1.6 9.2 1.1 5.2 2 1 2 5 5 4 0 Lipoprotein leucine-zipper She9_MDM33 PF05546.11 gi|124028238|ref|YP_001013558.1| - 0.21 11.4 3.5 0.43 10.4 3.5 1.5 1 0 0 1 1 1 0 She9 / Mdm33 family GrpE PF01025.19 gi|124028238|ref|YP_001013558.1| - 0.21 11.2 7.3 0.71 9.5 6.6 2.2 1 1 0 1 1 1 0 GrpE Cytochrome_C554 PF13435.6 gi|124028238|ref|YP_001013558.1| - 0.22 12.4 0.2 0.22 12.4 0.2 6.4 4 2 3 7 7 4 0 Cytochrome c554 and c-prime Syntaxin_2 PF14523.6 gi|124028238|ref|YP_001013558.1| - 0.23 11.9 6.7 5.1 7.5 0.9 2.6 1 1 1 2 2 2 0 Syntaxin-like protein Jnk-SapK_ap_N PF09744.9 gi|124028238|ref|YP_001013558.1| - 0.24 11.6 8.3 1 9.5 8.3 1.9 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF4349 PF14257.6 gi|124028238|ref|YP_001013558.1| - 0.24 10.8 13.3 0.74 9.2 2.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) MscS_porin PF12795.7 gi|124028238|ref|YP_001013558.1| - 0.25 10.9 27.0 1.1 8.7 16.6 2.0 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain Uso1_p115_C PF04871.13 gi|124028238|ref|YP_001013558.1| - 0.25 11.7 18.6 7.6 6.9 4.2 2.6 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region AIP3 PF03915.13 gi|124028238|ref|YP_001013558.1| - 0.28 10.2 5.0 0.66 9.0 5.0 1.4 1 1 0 1 1 1 0 Actin interacting protein 3 HrpB7 PF09486.10 gi|124028238|ref|YP_001013558.1| - 0.28 11.5 9.0 0.95 9.8 2.2 2.4 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) CorA PF01544.18 gi|124028238|ref|YP_001013558.1| - 0.29 10.4 2.8 0.37 10.0 1.2 1.8 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Tropomyosin PF00261.20 gi|124028238|ref|YP_001013558.1| - 0.31 10.4 9.1 0.9 8.9 9.0 1.7 1 1 0 1 1 1 0 Tropomyosin DUF3251 PF11622.8 gi|124028238|ref|YP_001013558.1| - 0.32 10.6 10.3 2.6 7.7 3.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3251) Noelin-1 PF12308.8 gi|124028238|ref|YP_001013558.1| - 0.33 11.0 1.2 6.7 6.8 0.1 2.7 1 1 2 3 3 3 0 Neurogenesis glycoprotein DUF2968 PF11180.8 gi|124028238|ref|YP_001013558.1| - 0.33 10.6 10.1 0.099 12.3 6.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2968) E6 PF00518.17 gi|124028238|ref|YP_001013558.1| - 0.34 11.4 2.9 0.54 10.7 0.1 2.8 3 1 0 3 3 1 0 Early Protein (E6) Dor1 PF04124.12 gi|124028238|ref|YP_001013558.1| - 0.35 9.5 8.9 0.22 10.2 2.7 2.0 1 1 1 2 2 2 0 Dor1-like family Mod_r PF07200.13 gi|124028238|ref|YP_001013558.1| - 0.39 10.8 15.0 1 9.4 7.5 2.4 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein YPEB PF14620.6 gi|124028238|ref|YP_001013558.1| - 0.4 10.0 4.4 0.71 9.2 4.4 1.3 1 0 0 1 1 1 0 YpeB sporulation AAA_13 PF13166.6 gi|124028238|ref|YP_001013558.1| - 0.49 9.0 9.6 0.46 9.1 1.8 1.7 1 1 1 2 2 2 0 AAA domain HAUS-augmin3 PF14932.6 gi|124028238|ref|YP_001013558.1| - 0.56 9.7 14.2 1.7 8.2 14.2 1.7 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 APG17 PF04108.12 gi|124028238|ref|YP_001013558.1| - 0.58 9.2 8.4 0.72 8.9 1.6 2.3 1 1 1 2 2 2 0 Autophagy protein Apg17 CENP-K PF11802.8 gi|124028238|ref|YP_001013558.1| - 0.59 9.7 6.8 0.98 8.9 6.8 1.3 1 0 0 1 1 1 0 Centromere-associated protein K Rho_Binding PF08912.11 gi|124028238|ref|YP_001013558.1| - 0.6 11.0 11.5 1.4 9.8 1.2 3.3 1 1 1 2 2 2 0 Rho Binding Syntaxin PF00804.25 gi|124028238|ref|YP_001013558.1| - 0.6 9.7 6.8 2.1 7.9 0.8 2.3 1 1 1 2 2 2 0 Syntaxin HAP1_N PF04849.13 gi|124028238|ref|YP_001013558.1| - 0.63 9.2 11.2 1.6 7.9 10.7 1.9 1 1 0 1 1 1 0 HAP1 N-terminal conserved region TBK1_CCD1 PF18394.1 gi|124028238|ref|YP_001013558.1| - 0.63 9.6 4.4 2.2 7.8 0.1 2.4 1 1 1 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 Ax_dynein_light PF10211.9 gi|124028238|ref|YP_001013558.1| - 0.63 10.0 6.7 2.7 7.9 0.9 2.6 1 1 1 2 2 2 0 Axonemal dynein light chain Zn_ribbon_SprT PF17283.2 gi|124028238|ref|YP_001013558.1| - 0.64 10.0 5.5 0.37 10.7 2.2 2.3 2 0 0 2 2 1 0 SprT-like zinc ribbon domain CLZ PF16526.5 gi|124028238|ref|YP_001013558.1| - 0.7 10.3 12.1 4.2 7.8 0.5 3.7 1 1 3 4 4 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF4686 PF15742.5 gi|124028238|ref|YP_001013558.1| - 0.71 8.9 10.3 1.3 8.1 10.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4686) DUF4164 PF13747.6 gi|124028238|ref|YP_001013558.1| - 0.72 10.2 9.5 4 7.8 3.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) XhlA PF10779.9 gi|124028238|ref|YP_001013558.1| - 0.77 10.0 6.5 12 6.2 0.4 3.4 1 1 1 3 3 3 0 Haemolysin XhlA DUF5082 PF16888.5 gi|124028238|ref|YP_001013558.1| - 0.79 10.0 11.3 1.5 9.1 1.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) Fmp27_WPPW PF10359.9 gi|124028238|ref|YP_001013558.1| - 0.85 8.4 5.4 5.5 5.7 5.5 2.1 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CENP-H PF05837.12 gi|124028238|ref|YP_001013558.1| - 0.93 9.9 14.5 2.9 8.3 5.0 2.5 1 1 0 2 2 2 0 Centromere protein H (CENP-H) Atg14 PF10186.9 gi|124028238|ref|YP_001013558.1| - 0.96 8.5 14.9 1.4 7.9 11.5 2.6 2 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Tup_N PF08581.10 gi|124028238|ref|YP_001013558.1| - 0.96 9.8 3.2 3.6 8.0 1.0 2.7 1 1 3 4 4 3 0 Tup N-terminal IES5 PF17335.2 gi|124028238|ref|YP_001013558.1| - 0.98 9.7 3.3 1.5 9.1 0.9 2.3 2 0 0 2 2 1 0 Ino80 complex subunit 5 CREPT PF16566.5 gi|124028238|ref|YP_001013558.1| - 1 9.5 6.4 8.5 6.5 0.5 2.4 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour SKA1 PF07160.12 gi|124028238|ref|YP_001013558.1| - 1 9.1 10.4 5.9 6.7 1.7 2.3 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 COG6 PF06419.11 gi|124028238|ref|YP_001013558.1| - 1 7.5 10.8 0.093 10.9 2.0 2.3 2 1 1 3 3 2 0 Conserved oligomeric complex COG6 ZnuA PF01297.17 gi|124028238|ref|YP_001013558.1| - 1.1 8.7 3.4 2.3 7.6 3.4 1.5 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic DUF641 PF04859.12 gi|124028238|ref|YP_001013558.1| - 1.1 9.6 6.6 0.73 10.2 1.8 2.5 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) ATP-synt_D PF01813.17 gi|124028238|ref|YP_001013558.1| - 1.2 9.0 8.1 4.6 7.0 1.0 3.3 2 1 2 4 4 3 0 ATP synthase subunit D MCPsignal PF00015.21 gi|124028238|ref|YP_001013558.1| - 1.2 8.9 9.1 0.87 9.4 4.6 2.4 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Cep57_MT_bd PF06657.13 gi|124028238|ref|YP_001013558.1| - 1.3 9.5 10.6 5 7.6 4.8 3.0 1 1 2 3 3 2 0 Centrosome microtubule-binding domain of Cep57 Occludin_ELL PF07303.13 gi|124028238|ref|YP_001013558.1| - 1.3 9.8 5.9 21 5.9 0.6 3.5 1 1 4 5 5 4 0 Occludin homology domain FH2 PF02181.23 gi|124028238|ref|YP_001013558.1| - 1.3 8.0 7.6 1.3 8.0 1.7 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain YscO PF07321.12 gi|124028238|ref|YP_001013558.1| - 1.3 8.9 11.8 0.62 10.0 3.7 2.6 1 1 1 2 2 2 0 Type III secretion protein YscO DASH_Dad2 PF08654.10 gi|124028238|ref|YP_001013558.1| - 1.3 9.4 17.2 1.4 9.4 2.6 3.3 3 1 2 5 5 3 0 DASH complex subunit Dad2 DASH_Dam1 PF08653.10 gi|124028238|ref|YP_001013558.1| - 1.4 8.8 3.0 22 4.9 0.1 2.8 2 0 0 2 2 2 0 DASH complex subunit Dam1 DUF4795 PF16043.5 gi|124028238|ref|YP_001013558.1| - 1.4 8.4 11.5 7.6 6.1 11.5 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DHR10 PF18595.1 gi|124028238|ref|YP_001013558.1| - 1.6 8.8 16.2 4.7 7.3 13.7 2.4 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain Wtap PF17098.5 gi|124028238|ref|YP_001013558.1| - 1.6 8.6 12.2 2.7 7.9 9.8 2.3 1 1 1 2 2 2 0 WTAP/Mum2p family Serine_rich PF08824.10 gi|124028238|ref|YP_001013558.1| - 1.7 8.6 6.0 0.89 9.5 1.5 2.2 1 1 0 2 2 2 0 Serine rich protein interaction domain DUF4618 PF15397.6 gi|124028238|ref|YP_001013558.1| - 1.8 7.9 9.6 0.73 9.2 1.5 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) THOC7 PF05615.13 gi|124028238|ref|YP_001013558.1| - 1.8 8.9 7.7 3 8.2 5.7 2.2 1 1 1 2 2 2 0 Tho complex subunit 7 Cep57_CLD_2 PF14197.6 gi|124028238|ref|YP_001013558.1| - 1.8 8.7 9.9 2.9 8.0 4.8 3.1 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 Ribosomal_L29 PF00831.23 gi|124028238|ref|YP_001013558.1| - 1.9 8.5 6.3 0.71 9.9 0.8 2.8 2 0 0 2 2 1 0 Ribosomal L29 protein Prefoldin PF02996.17 gi|124028238|ref|YP_001013558.1| - 1.9 8.4 14.4 2.8 7.9 1.6 3.5 1 1 2 3 3 3 0 Prefoldin subunit YlqD PF11068.8 gi|124028238|ref|YP_001013558.1| - 2 8.8 14.9 1.7 9.0 2.2 2.4 1 1 1 2 2 2 0 YlqD protein TPD52 PF04201.15 gi|124028238|ref|YP_001013558.1| - 2 8.0 8.3 29 4.2 8.3 2.6 1 1 0 1 1 1 0 Tumour protein D52 family FUSC PF04632.12 gi|124028238|ref|YP_001013558.1| - 2.6 6.5 8.7 6 5.3 8.7 1.5 1 1 0 1 1 1 0 Fusaric acid resistance protein family FliD_C PF07195.12 gi|124028238|ref|YP_001013558.1| - 2.6 7.4 7.8 24 4.2 7.6 2.0 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Prefoldin_2 PF01920.20 gi|124028238|ref|YP_001013558.1| - 2.7 8.0 19.1 0.077 13.0 2.1 3.6 2 1 0 3 3 2 0 Prefoldin subunit DUF4140 PF13600.6 gi|124028238|ref|YP_001013558.1| - 2.7 8.5 13.9 0.7 10.4 3.4 3.4 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) KxDL PF10241.9 gi|124028238|ref|YP_001013558.1| - 3.3 8.0 6.4 18 5.7 1.0 2.6 1 1 1 2 2 2 0 Uncharacterized conserved protein TRAF_BIRC3_bd PF16673.5 gi|124028238|ref|YP_001013558.1| - 3.4 7.5 4.6 11 5.9 0.4 2.9 2 1 1 3 3 2 0 TNF receptor-associated factor BIRC3 binding domain SKA2 PF16740.5 gi|124028238|ref|YP_001013558.1| - 3.5 7.5 12.6 3.9 7.3 2.6 2.9 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 Csm1_N PF18504.1 gi|124028238|ref|YP_001013558.1| - 3.6 8.0 11.8 1.1 9.7 1.6 3.2 1 1 1 2 2 2 0 Csm1 N-terminal domain COG2 PF06148.11 gi|124028238|ref|YP_001013558.1| - 3.7 7.7 6.8 17 5.5 2.9 2.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Macoilin PF09726.9 gi|124028238|ref|YP_001013558.1| - 3.9 5.9 7.1 6 5.3 7.1 1.2 1 0 0 1 1 1 0 Macoilin family DUF3585 PF12130.8 gi|124028238|ref|YP_001013558.1| - 4.3 7.5 7.1 6.4 6.9 5.8 1.8 2 0 0 2 2 1 0 Bivalent Mical/EHBP Rab binding domain CdvA PF18822.1 gi|124028238|ref|YP_001013558.1| - 4.4 7.2 13.3 1.8 8.4 7.4 3.1 2 1 1 3 3 2 0 CdvA-like coiled-coil domain Snapin_Pallidin PF14712.6 gi|124028238|ref|YP_001013558.1| - 4.6 7.7 13.3 7.3 7.1 4.8 3.0 1 1 1 2 2 2 0 Snapin/Pallidin Med9 PF07544.13 gi|124028238|ref|YP_001013558.1| - 4.7 7.4 6.6 12 6.0 4.8 2.5 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 HalX PF08663.10 gi|124028238|ref|YP_001013558.1| - 5 7.5 9.2 3.3 8.1 5.0 2.9 1 1 1 3 3 2 0 HalX domain Swi5 PF07061.11 gi|124028238|ref|YP_001013558.1| - 5.8 7.1 17.0 11 6.2 2.9 3.9 1 1 2 3 3 3 0 Swi5 PilJ PF13675.6 gi|124028238|ref|YP_001013558.1| - 5.9 7.0 11.3 3.7 7.6 2.0 2.3 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2937 PF11157.8 gi|124028238|ref|YP_001013558.1| - 6 6.6 11.7 2.5 7.8 0.1 3.5 2 1 2 4 4 3 0 Protein of unknown function (DUF2937) MIP-T3_C PF17749.1 gi|124028238|ref|YP_001013558.1| - 6.1 6.8 9.7 12 5.8 9.4 1.6 1 1 0 1 1 1 0 Microtubule-binding protein MIP-T3 C-terminal region SPATA1_C PF15743.5 gi|124028238|ref|YP_001013558.1| - 6.6 6.8 7.1 2.3 8.3 0.3 2.4 1 1 1 2 2 2 0 Spermatogenesis-associated C-terminus DASH_Spc34 PF08657.10 gi|124028238|ref|YP_001013558.1| - 6.6 6.4 6.6 7.3 6.3 1.4 2.1 1 1 1 2 2 2 0 DASH complex subunit Spc34 OmpH PF03938.14 gi|124028238|ref|YP_001013558.1| - 7.3 6.9 16.7 2.9e+02 1.7 16.6 2.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Taxilin PF09728.9 gi|124028238|ref|YP_001013558.1| - 7.5 5.6 12.4 92 2.1 12.4 2.0 1 1 0 1 1 1 0 Myosin-like coiled-coil protein WXG100 PF06013.12 gi|124028238|ref|YP_001013558.1| - 8.4 6.7 15.0 0.72 10.1 2.8 3.7 2 1 0 3 3 2 0 Proteins of 100 residues with WXG RasGAP_C PF03836.15 gi|124028238|ref|YP_001013558.1| - 8.9 6.5 6.9 9.6 6.4 1.9 2.5 1 1 1 2 2 2 0 RasGAP C-terminus DUF4472 PF14739.6 gi|124028238|ref|YP_001013558.1| - 9 7.1 11.1 1.7 9.4 3.5 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4472) FliJ PF02050.16 gi|124028238|ref|YP_001013558.1| - 9.3 6.5 12.9 1.9 8.7 4.5 2.5 1 1 2 3 3 3 0 Flagellar FliJ protein FAM76 PF16046.5 gi|124028238|ref|YP_001013558.1| - 9.9 5.4 11.4 0.33 10.3 2.2 2.9 2 1 1 3 3 2 0 FAM76 protein DAP10 PF07213.11 gi|124028239|ref|YP_001013559.1| - 0.11 12.4 0.1 0.55 10.2 0.1 2.1 1 0 0 1 1 1 0 DAP10 membrane protein Cytochrome_C7 PF14522.6 gi|124028240|ref|YP_001013560.1| - 5.3e-06 26.4 6.8 0.013 15.5 6.9 2.9 1 1 0 1 1 1 1 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|124028240|ref|YP_001013560.1| - 0.0095 16.4 11.5 0.65 10.5 4.0 3.1 1 1 1 2 2 2 1 Cytochrome c3 Cytochrom_NNT PF03264.14 gi|124028240|ref|YP_001013560.1| - 0.027 14.2 10.5 1.7 8.3 0.2 3.2 2 1 1 3 3 3 0 NapC/NirT cytochrome c family, N-terminal region Paired_CXXCH_1 PF09699.10 gi|124028240|ref|YP_001013560.1| - 0.054 13.2 20.0 0.1 12.4 0.5 4.0 2 1 2 4 4 4 0 Doubled CXXCH motif (Paired_CXXCH_1) zf-CHY PF05495.12 gi|124028240|ref|YP_001013560.1| - 0.36 11.4 11.4 3.9 8.0 1.5 3.3 2 1 1 3 3 3 0 CHY zinc finger Cytochrom_CIII PF02085.16 gi|124028240|ref|YP_001013560.1| - 0.53 10.7 10.1 6.8e+02 0.7 9.9 3.1 1 1 0 1 1 1 0 Class III cytochrome C family Cytochrome_C554 PF13435.6 gi|124028240|ref|YP_001013560.1| - 0.88 10.5 11.3 12 6.9 2.9 3.3 2 2 0 2 2 2 0 Cytochrome c554 and c-prime Cytochrome_CBB3 PF13442.6 gi|124028240|ref|YP_001013560.1| - 1.1 9.6 10.6 28 5.1 0.0 4.1 2 1 2 4 4 4 0 Cytochrome C oxidase, cbb3-type, subunit III CCP_MauG PF03150.14 gi|124028240|ref|YP_001013560.1| - 1.2 9.7 8.3 48 4.6 0.0 3.9 2 1 1 4 4 4 0 Di-haem cytochrome c peroxidase CxC4 PF18717.1 gi|124028240|ref|YP_001013560.1| - 1.4 8.8 5.8 3.2 7.6 0.0 2.4 2 1 1 3 3 3 0 CxC4 like cysteine cluster associated with KDZ transposases Cytochrome_P460 PF16694.5 gi|124028240|ref|YP_001013560.1| - 7.4 6.9 5.9 59 4.0 0.5 3.6 4 0 0 4 4 4 0 Cytochrome P460 Kelch_1 PF01344.25 gi|124028240|ref|YP_001013560.1| - 9.7 5.9 9.8 5 6.8 0.7 2.9 3 0 0 3 3 3 0 Kelch motif Fer4 PF00037.27 gi|124028241|ref|YP_001013561.1| - 0.0052 16.6 3.8 0.012 15.4 3.8 1.7 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|124028241|ref|YP_001013561.1| - 0.0088 16.1 0.3 0.0088 16.1 0.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124028241|ref|YP_001013561.1| - 0.011 15.8 2.8 0.011 15.8 2.8 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain UCR_Fe-S_N PF10399.9 gi|124028241|ref|YP_001013561.1| - 0.012 14.9 0.1 0.023 14.1 0.1 1.3 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Fer4_6 PF12837.7 gi|124028241|ref|YP_001013561.1| - 0.013 15.5 3.8 0.013 15.5 3.8 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain TAT_signal PF10518.9 gi|124028241|ref|YP_001013561.1| - 0.017 15.0 1.0 0.029 14.2 1.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_9 PF13187.6 gi|124028241|ref|YP_001013561.1| - 0.03 14.5 3.1 0.03 14.5 3.1 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124028241|ref|YP_001013561.1| - 0.098 12.8 5.5 0.074 13.2 3.7 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|124028241|ref|YP_001013561.1| - 0.28 11.7 7.7 0.59 10.7 7.6 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|124028241|ref|YP_001013561.1| - 0.37 11.7 8.7 0.79 10.6 8.7 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|124028241|ref|YP_001013561.1| - 0.66 10.6 9.0 0.11 13.1 3.1 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|124028241|ref|YP_001013561.1| - 6.4 7.3 10.7 0.097 13.1 2.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124028241|ref|YP_001013561.1| - 8.2 7.2 11.8 0.19 12.3 4.3 2.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_11 PF13247.6 gi|124028242|ref|YP_001013562.1| - 1.2e-11 44.6 1.1 5.4e-08 32.9 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|124028242|ref|YP_001013562.1| - 6.3e-11 42.7 5.3 1.1e-10 42.0 5.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|124028242|ref|YP_001013562.1| - 4.5e-10 38.9 16.9 9.3e-09 34.7 2.6 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|124028242|ref|YP_001013562.1| - 3.1e-08 33.6 7.8 6.2e-08 32.6 7.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|124028242|ref|YP_001013562.1| - 4.6e-08 33.1 5.2 6.8e-08 32.6 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124028242|ref|YP_001013562.1| - 1.2e-07 31.4 11.9 5.6e-06 26.1 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|124028242|ref|YP_001013562.1| - 2.2e-07 30.6 13.9 9.6e-07 28.6 4.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|124028242|ref|YP_001013562.1| - 3.1e-07 30.8 1.1 5.6e-05 23.6 1.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|124028242|ref|YP_001013562.1| - 1.8e-05 25.4 15.3 0.0079 17.1 3.8 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|124028242|ref|YP_001013562.1| - 0.00034 21.0 6.5 0.0012 19.2 6.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124028242|ref|YP_001013562.1| - 0.00054 20.8 9.0 0.0016 19.4 9.0 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|124028242|ref|YP_001013562.1| - 0.00099 19.2 10.3 0.001 19.2 0.2 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124028242|ref|YP_001013562.1| - 0.001 19.4 3.1 0.001 19.4 3.1 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|124028242|ref|YP_001013562.1| - 0.019 15.7 0.5 0.019 15.7 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|124028242|ref|YP_001013562.1| - 0.095 13.3 2.3 0.095 13.3 2.3 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|124028242|ref|YP_001013562.1| - 1 9.6 7.7 0.85 9.8 0.3 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain NrfD PF03916.14 gi|124028243|ref|YP_001013563.1| - 2.5e-36 125.9 27.2 5.1e-36 124.9 27.2 1.5 1 0 0 1 1 1 1 Polysulphide reductase, NrfD Cytochrome_CBB3 PF13442.6 gi|124028244|ref|YP_001013564.1| - 0.018 15.3 0.1 0.038 14.3 0.1 1.6 1 1 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III DUF2946 PF11162.8 gi|124028244|ref|YP_001013564.1| - 0.037 14.7 0.1 0.077 13.7 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2946) Cytochrom_C PF00034.21 gi|124028244|ref|YP_001013564.1| - 0.11 13.6 0.1 0.18 13.0 0.1 1.5 1 1 0 1 1 1 0 Cytochrome c Pilin_N PF07790.11 gi|124028244|ref|YP_001013564.1| - 8.7 7.3 6.5 2.9 8.9 0.2 2.5 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal Radical_SAM PF04055.21 gi|124028245|ref|YP_001013565.1| - 1.1e-06 29.2 0.0 3.7e-06 27.4 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|124028245|ref|YP_001013565.1| - 0.013 15.2 2.4 8.8 6.0 4.7 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1848) Methyltransf_11 PF08241.12 gi|124028245|ref|YP_001013565.1| - 0.049 14.3 0.0 0.11 13.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|124028245|ref|YP_001013565.1| - 0.057 14.1 0.0 0.15 12.8 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Fucose_iso_C PF02952.17 gi|124028246|ref|YP_001013566.1| - 0.017 14.8 0.0 0.038 13.7 0.0 1.7 1 1 0 1 1 1 0 L-fucose isomerase, C-terminal domain Zeta_toxin PF06414.12 gi|124028247|ref|YP_001013567.1| - 0.018 14.4 0.0 0.043 13.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin DUF87 PF01935.17 gi|124028247|ref|YP_001013567.1| - 0.029 14.5 0.0 0.086 12.9 0.0 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain Thymidylate_kin PF02223.17 gi|124028247|ref|YP_001013567.1| - 0.033 13.8 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_26 PF13500.6 gi|124028247|ref|YP_001013567.1| - 0.046 13.5 0.1 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain LpxK PF02606.14 gi|124028247|ref|YP_001013567.1| - 0.06 12.4 0.3 0.12 11.4 0.3 1.6 1 1 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase ParA PF10609.9 gi|124028247|ref|YP_001013567.1| - 0.062 12.7 0.1 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|124028247|ref|YP_001013567.1| - 0.091 12.8 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|124028247|ref|YP_001013567.1| - 0.092 12.6 0.0 0.72 9.8 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CLP1_P PF16575.5 gi|124028247|ref|YP_001013567.1| - 0.11 12.3 0.0 2.6 7.8 0.0 2.2 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PRK PF00485.18 gi|124028247|ref|YP_001013567.1| - 0.12 12.1 0.1 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family eIF-1a PF01176.19 gi|124028248|ref|YP_001013568.1| - 1.9e-18 66.0 0.1 2.2e-18 65.8 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Gly-zipper_YMGG PF13441.6 gi|124028249|ref|YP_001013569.1| - 0.36 10.6 7.3 0.89 9.3 7.3 1.6 1 0 0 1 1 1 0 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.15 gi|124028249|ref|YP_001013569.1| - 2.1 8.3 7.2 5.6 6.9 7.2 1.7 1 1 0 1 1 1 0 Glycine zipper 2TM domain Bacteriocin_IIc PF10439.9 gi|124028249|ref|YP_001013569.1| - 2.7 8.2 7.8 2.9 8.1 5.7 2.2 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide MFS_1 PF07690.16 gi|124028250|ref|YP_001013571.1| - 1.5e-22 80.0 43.6 1.5e-22 80.0 43.6 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily NTP_transf_2 PF01909.23 gi|124028252|ref|YP_001013572.1| - 1.6e-07 31.6 0.0 2.1e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|124028252|ref|YP_001013572.1| - 4.1e-05 23.6 0.0 5.9e-05 23.1 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|124028252|ref|YP_001013572.1| - 0.02 15.1 0.0 0.024 14.8 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm PI-TkoII_IV PF18714.1 gi|124028252|ref|YP_001013572.1| - 0.078 12.4 0.1 0.17 11.3 0.0 1.5 2 0 0 2 2 2 0 DNA polymerase II intein Domain IV 7TM_GPCR_Srt PF10321.9 gi|124028252|ref|YP_001013572.1| - 0.087 11.8 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srt RIO1 PF01163.22 gi|124028253|ref|YP_001013573.1| - 1.4e-60 204.1 0.0 1.9e-60 203.7 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|124028253|ref|YP_001013573.1| - 1e-07 32.2 0.8 0.00075 19.5 0.0 3.1 1 1 2 3 3 3 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|124028253|ref|YP_001013573.1| - 0.016 14.5 0.1 0.045 13.1 0.1 1.7 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|124028253|ref|YP_001013573.1| - 0.02 13.7 0.0 0.041 12.6 0.0 1.5 1 0 0 1 1 1 0 Fungal protein kinase Glycoprot_B_PH2 PF17417.2 gi|124028253|ref|YP_001013573.1| - 0.16 12.3 0.0 0.35 11.2 0.0 1.5 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B PH-like domain KH_1 PF00013.29 gi|124028254|ref|YP_001013574.1| - 7.5e-12 44.9 2.3 3.9e-05 23.4 0.5 2.4 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|124028254|ref|YP_001013574.1| - 6.1e-06 26.2 0.0 1.1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Krr1 KH1 domain KH_2 PF07650.17 gi|124028254|ref|YP_001013574.1| - 0.056 13.3 3.7 2.7 7.9 0.4 2.5 2 0 0 2 2 2 0 KH domain KH_4 PF13083.6 gi|124028254|ref|YP_001013574.1| - 0.91 9.4 3.5 20 5.1 0.2 2.7 2 1 0 2 2 2 0 KH domain Lactamase_B PF00753.27 gi|124028257|ref|YP_001013577.1| - 1.1e-06 28.8 0.8 2.1e-06 27.9 0.1 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|124028257|ref|YP_001013577.1| - 1.7e-06 27.7 0.1 0.017 14.6 0.0 2.4 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|124028257|ref|YP_001013577.1| - 5e-05 23.3 0.0 8.8e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain GBR_NSP5 PF17580.2 gi|124028258|ref|YP_001013578.1| - 0.0011 18.8 0.1 0.0012 18.8 0.1 1.0 1 0 0 1 1 1 1 Group B Rotavirus Non-structural protein 5 ABC_tran PF00005.27 gi|124028259|ref|YP_001013579.1| - 3e-24 86.1 0.0 4.4e-24 85.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SbcCD_C PF13558.6 gi|124028259|ref|YP_001013579.1| - 0.0023 18.2 0.4 0.011 16.0 0.1 2.3 3 1 0 3 3 3 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|124028259|ref|YP_001013579.1| - 0.1 12.0 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF72 PF01904.18 gi|124028260|ref|YP_001013580.1| - 1.8e-36 126.3 0.6 2.3e-36 126.0 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|124028260|ref|YP_001013580.1| - 3.9e-05 23.2 0.1 0.015 14.8 0.0 2.4 2 1 0 2 2 2 2 Xylose isomerase-like TIM barrel DegT_DnrJ_EryC1 PF01041.17 gi|124028261|ref|YP_001013581.1| - 1.6e-136 455.4 0.0 1.8e-136 455.2 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|124028261|ref|YP_001013581.1| - 8e-09 35.2 0.0 1.5e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|124028261|ref|YP_001013581.1| - 6.5e-08 31.9 0.0 1.1e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|124028261|ref|YP_001013581.1| - 9.2e-05 21.8 0.0 0.00014 21.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|124028261|ref|YP_001013581.1| - 0.00012 20.8 0.0 0.00016 20.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF4350 PF14258.6 gi|124028261|ref|YP_001013581.1| - 0.11 13.0 0.0 3 8.3 0.0 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4350) OKR_DC_1 PF01276.20 gi|124028261|ref|YP_001013581.1| - 0.16 10.7 0.0 0.24 10.1 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain GFO_IDH_MocA PF01408.22 gi|124028262|ref|YP_001013582.1| - 8.8e-23 81.4 0.1 1.4e-22 80.8 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|124028262|ref|YP_001013582.1| - 0.0071 16.9 0.0 0.015 15.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|124028262|ref|YP_001013582.1| - 0.011 16.1 0.1 0.021 15.2 0.1 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|124028262|ref|YP_001013582.1| - 0.063 12.8 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|124028262|ref|YP_001013582.1| - 0.075 13.3 0.1 0.18 12.1 0.1 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox PF00070.27 gi|124028262|ref|YP_001013582.1| - 0.082 13.5 0.4 0.57 10.8 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|124028262|ref|YP_001013582.1| - 0.091 12.6 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|124028262|ref|YP_001013582.1| - 0.096 11.9 0.2 0.17 11.1 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|124028262|ref|YP_001013582.1| - 0.13 12.4 0.0 0.33 11.0 0.0 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase CoA_binding_2 PF13380.6 gi|124028262|ref|YP_001013582.1| - 0.16 12.5 0.3 0.4 11.2 0.3 1.6 1 0 0 1 1 1 0 CoA binding domain Hexapep PF00132.24 gi|124028263|ref|YP_001013583.1| - 2.8e-29 99.7 28.8 2.9e-09 36.3 4.6 5.3 5 0 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|124028263|ref|YP_001013583.1| - 5.5e-18 64.4 27.2 9.8e-10 38.0 4.4 5.6 5 1 1 6 6 6 5 Hexapeptide repeat of succinyl-transferase BPD_transp_2 PF02653.16 gi|124028264|ref|YP_001013584.1| - 3.9e-39 134.4 25.8 5e-39 134.1 25.8 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF1269 PF06897.12 gi|124028264|ref|YP_001013584.1| - 1.5 9.1 9.7 1.3 9.3 6.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) BPD_transp_2 PF02653.16 gi|124028265|ref|YP_001013585.1| - 1.8e-34 119.1 29.1 1.8e-34 119.1 29.1 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component CbtB PF09489.10 gi|124028265|ref|YP_001013585.1| - 0.34 11.0 0.1 0.34 11.0 0.1 4.7 4 0 0 4 4 4 0 Probable cobalt transporter subunit (CbtB) DUF4396 PF14342.6 gi|124028265|ref|YP_001013585.1| - 1.8 8.9 9.7 3.6 8.0 3.8 3.0 1 1 1 3 3 3 0 Domain of unknown function (DUF4396) ABC_tran PF00005.27 gi|124028266|ref|YP_001013586.1| - 3.3e-49 166.9 0.0 2.1e-31 109.2 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|124028266|ref|YP_001013586.1| - 1.2e-09 38.4 1.5 0.00018 21.5 0.2 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|124028266|ref|YP_001013586.1| - 7.6e-05 22.6 0.1 0.15 11.7 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|124028266|ref|YP_001013586.1| - 0.0018 18.7 0.3 0.01 16.3 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|124028266|ref|YP_001013586.1| - 0.0026 17.5 0.1 0.27 11.0 0.1 2.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain Bac_DnaA PF00308.18 gi|124028266|ref|YP_001013586.1| - 0.026 14.4 0.4 0.26 11.1 0.1 2.6 3 0 0 3 3 3 0 Bacterial dnaA protein eRF1_3 PF03465.15 gi|124028266|ref|YP_001013586.1| - 0.03 14.8 0.0 0.42 11.1 0.0 2.3 2 0 0 2 2 2 0 eRF1 domain 3 AAA_23 PF13476.6 gi|124028266|ref|YP_001013586.1| - 0.032 14.8 0.1 0.062 13.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|124028266|ref|YP_001013586.1| - 0.06 13.2 0.2 2.2 8.1 0.0 3.0 3 0 0 3 3 3 0 RsgA GTPase AAA_22 PF13401.6 gi|124028266|ref|YP_001013586.1| - 0.075 13.3 0.4 1.1 9.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|124028266|ref|YP_001013586.1| - 0.096 12.4 0.4 0.36 10.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain Ribosomal_L4 PF00573.22 gi|124028266|ref|YP_001013586.1| - 0.12 12.0 0.0 9.9 5.8 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein L4/L1 family AAA_13 PF13166.6 gi|124028266|ref|YP_001013586.1| - 0.24 10.0 0.1 0.8 8.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Bmp PF02608.14 gi|124028267|ref|YP_001013587.1| - 8e-47 159.7 0.0 1.7e-46 158.6 0.0 1.5 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_4 PF13407.6 gi|124028267|ref|YP_001013587.1| - 5.6e-05 22.8 0.9 0.00033 20.3 0.3 2.1 2 0 0 2 2 2 1 Periplasmic binding protein domain Shisa PF13908.6 gi|124028267|ref|YP_001013587.1| - 0.004 17.4 0.6 0.027 14.7 1.4 1.8 2 0 0 2 2 2 1 Wnt and FGF inhibitory regulator DUF4088 PF13317.6 gi|124028267|ref|YP_001013587.1| - 0.007 16.0 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF4088) SpoIIIAH PF12685.7 gi|124028267|ref|YP_001013587.1| - 0.0076 16.1 1.5 0.041 13.7 0.1 2.2 2 0 0 2 2 2 1 SpoIIIAH-like protein ThrE PF06738.12 gi|124028267|ref|YP_001013587.1| - 0.019 14.4 0.6 7.1 5.9 0.0 2.4 2 0 0 2 2 2 0 Putative threonine/serine exporter GAT PF03127.14 gi|124028267|ref|YP_001013587.1| - 0.043 14.1 0.0 0.087 13.1 0.0 1.5 1 0 0 1 1 1 0 GAT domain Peripla_BP_1 PF00532.21 gi|124028267|ref|YP_001013587.1| - 0.047 13.1 0.0 0.076 12.4 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Glyco_tran_28_C PF04101.16 gi|124028268|ref|YP_001013588.1| - 2e-06 27.9 0.0 3.2e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Alg14 PF08660.11 gi|124028268|ref|YP_001013588.1| - 0.00014 21.9 0.0 0.0035 17.3 0.0 2.1 1 1 0 2 2 2 1 Oligosaccharide biosynthesis protein Alg14 like Glyco_trans_4_4 PF13579.6 gi|124028268|ref|YP_001013588.1| - 0.0007 20.1 8.0 0.0007 20.1 8.0 2.8 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|124028268|ref|YP_001013588.1| - 0.0011 19.1 6.6 0.012 15.7 0.5 2.6 2 1 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_3 PF13528.6 gi|124028268|ref|YP_001013588.1| - 0.021 14.1 0.1 1.6 7.9 0.1 2.1 2 0 0 2 2 2 0 Glycosyl transferase family 1 Glyco_transf_28 PF03033.20 gi|124028268|ref|YP_001013588.1| - 0.028 14.4 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain YjeF_N PF03853.15 gi|124028268|ref|YP_001013588.1| - 0.03 14.2 0.2 0.062 13.2 0.2 1.5 1 0 0 1 1 1 0 YjeF-related protein N-terminus Glycos_transf_1 PF00534.20 gi|124028268|ref|YP_001013588.1| - 0.15 11.5 0.2 0.49 9.9 0.2 1.8 1 1 0 1 1 1 0 Glycosyl transferases group 1 UDPG_MGDP_dh_N PF03721.14 gi|124028269|ref|YP_001013589.1| - 1.5e-41 142.1 0.0 3.8e-41 140.7 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|124028269|ref|YP_001013589.1| - 8e-28 96.5 0.0 1.4e-27 95.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|124028269|ref|YP_001013589.1| - 1.2e-22 80.3 0.1 4.2e-22 78.5 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|124028269|ref|YP_001013589.1| - 4.5e-07 30.2 0.0 1.7e-05 25.1 0.0 2.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|124028269|ref|YP_001013589.1| - 0.0014 18.6 0.1 0.012 15.5 0.0 2.5 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|124028269|ref|YP_001013589.1| - 0.0018 17.7 0.3 0.15 11.4 0.1 3.2 2 2 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|124028269|ref|YP_001013589.1| - 0.0019 18.2 0.0 0.011 15.7 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_11 PF14833.6 gi|124028269|ref|YP_001013589.1| - 0.015 15.6 0.3 0.032 14.5 0.3 1.6 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Rossmann-like PF10727.9 gi|124028269|ref|YP_001013589.1| - 0.053 13.4 0.2 1.1 9.2 0.1 2.9 2 1 0 2 2 2 0 Rossmann-like domain PCB_OB PF17092.5 gi|124028269|ref|YP_001013589.1| - 0.056 14.2 0.8 22 5.8 0.0 3.1 3 0 0 3 3 3 0 Penicillin-binding protein OB-like domain ApbA PF02558.16 gi|124028269|ref|YP_001013589.1| - 0.091 12.4 0.0 0.26 10.9 0.0 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HU-CCDC81_bac_2 PF18175.1 gi|124028269|ref|YP_001013589.1| - 0.21 11.5 0.0 0.43 10.5 0.0 1.5 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 2 Memo PF01875.17 gi|124028270|ref|YP_001013590.1| - 4.3e-64 216.3 0.0 5.3e-64 216.0 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|124028270|ref|YP_001013590.1| - 0.00081 18.5 0.0 0.002 17.3 0.0 1.6 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase ATPgrasp_N PF18130.1 gi|124028270|ref|YP_001013590.1| - 0.084 13.4 0.0 0.39 11.3 0.0 2.2 2 1 0 2 2 2 0 ATP-grasp N-terminal domain PTS_IIB PF02302.17 gi|124028270|ref|YP_001013590.1| - 0.12 13.0 0.2 0.52 11.0 0.0 2.0 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit NTP_transferase PF00483.23 gi|124028272|ref|YP_001013592.1| - 1.4e-39 136.2 0.0 1.6e-39 136.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|124028272|ref|YP_001013592.1| - 1.1e-15 58.3 0.0 2.8e-15 57.0 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain IspD PF01128.19 gi|124028272|ref|YP_001013592.1| - 1.7e-05 24.7 0.0 2.6e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.6 gi|124028272|ref|YP_001013592.1| - 0.0023 17.8 0.0 0.021 14.7 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4224) Glycos_transf_2 PF00535.26 gi|124028272|ref|YP_001013592.1| - 0.019 14.8 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 NUDIX PF00293.28 gi|124028273|ref|YP_001013593.1| - 1.1e-22 80.5 0.1 1.2e-22 80.3 0.1 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|124028273|ref|YP_001013593.1| - 0.0049 16.8 0.0 0.006 16.6 0.0 1.4 1 1 0 1 1 1 1 NUDIX domain tRNA-synt_1 PF00133.22 gi|124028274|ref|YP_001013594.1| - 1e-166 555.7 1.1 1.4e-166 555.3 1.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|124028274|ref|YP_001013594.1| - 6.4e-28 97.6 2.8 1.4e-27 96.5 2.8 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|124028274|ref|YP_001013594.1| - 1.3e-17 63.6 2.0 1.1e-06 27.6 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|124028274|ref|YP_001013594.1| - 6.6e-07 29.0 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|124028274|ref|YP_001013594.1| - 1.3e-06 28.0 0.0 0.024 14.0 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|124028274|ref|YP_001013594.1| - 0.00016 20.7 0.0 0.00035 19.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (K) zf-ACC PF17848.1 gi|124028274|ref|YP_001013594.1| - 0.0028 17.7 1.6 20 5.3 0.0 3.9 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 gi|124028274|ref|YP_001013594.1| - 0.021 14.9 1.2 15 5.7 0.4 3.5 2 1 0 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|124028274|ref|YP_001013594.1| - 0.16 11.5 0.9 3.7 7.2 0.1 2.8 2 0 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|124028274|ref|YP_001013594.1| - 0.8 9.1 7.5 5.6 6.4 0.0 3.6 4 0 0 4 4 4 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.6 gi|124028274|ref|YP_001013594.1| - 1.6 8.7 7.2 8.5 6.4 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|124028274|ref|YP_001013594.1| - 1.6 8.7 7.5 12 5.9 0.1 3.5 3 0 0 3 3 3 0 SprT-like zinc ribbon domain PaREP1 PF05942.11 gi|124028274|ref|YP_001013594.1| - 2.1 8.3 8.1 2.5 8.1 2.6 3.3 3 0 0 3 3 3 0 Archaeal PaREP1/PaREP8 family HscB_4_cys PF18256.1 gi|124028274|ref|YP_001013594.1| - 3.6 7.5 7.3 11 5.9 0.1 3.5 4 0 0 4 4 4 0 Co-chaperone HscB tetracysteine metal binding motif Zn-ribbon_8 PF09723.10 gi|124028274|ref|YP_001013594.1| - 3.9 7.7 6.8 64 3.8 2.8 3.4 2 1 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|124028274|ref|YP_001013594.1| - 6.7 6.3 10.8 16 5.1 0.2 3.7 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|124028274|ref|YP_001013594.1| - 6.7 6.6 11.9 7.2 6.5 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain B3_4 PF03483.17 gi|124028276|ref|YP_001013596.1| - 2.1e-27 95.9 0.0 2.8e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 B3/4 domain KH_5 PF13184.6 gi|124028277|ref|YP_001013597.1| - 0.12 12.5 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 NusA-like KH domain GHMP_kinases_N PF00288.26 gi|124028277|ref|YP_001013597.1| - 0.12 12.6 5.8 0.34 11.2 5.8 1.8 1 1 0 1 1 1 0 GHMP kinases N terminal domain Zn-ribbon_8 PF09723.10 gi|124028278|ref|YP_001013598.1| - 0.0015 18.6 1.7 0.0028 17.7 1.7 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|124028278|ref|YP_001013598.1| - 0.002 18.1 0.1 0.003 17.5 0.1 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type HTH_11 PF08279.12 gi|124028278|ref|YP_001013598.1| - 0.0086 16.0 0.1 0.024 14.6 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|124028278|ref|YP_001013598.1| - 0.012 15.3 0.2 0.028 14.2 0.2 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HypA PF01155.19 gi|124028278|ref|YP_001013598.1| - 0.019 15.0 2.0 0.023 14.7 0.9 1.6 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA YhfH PF14149.6 gi|124028278|ref|YP_001013598.1| - 0.026 14.5 0.3 0.062 13.3 0.2 1.7 2 0 0 2 2 2 0 YhfH-like protein HTH_5 PF01022.20 gi|124028278|ref|YP_001013598.1| - 0.026 14.4 0.1 0.088 12.7 0.1 1.9 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HARE-HTH PF05066.13 gi|124028278|ref|YP_001013598.1| - 0.077 13.4 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 HB1, ASXL, restriction endonuclease HTH domain HTH_12 PF08461.10 gi|124028278|ref|YP_001013598.1| - 0.08 12.9 1.4 0.15 12.0 1.4 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|124028278|ref|YP_001013598.1| - 0.091 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF4777 PF16007.5 gi|124028278|ref|YP_001013598.1| - 0.11 12.7 0.1 0.19 12.0 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4777) UPF0547 PF10571.9 gi|124028278|ref|YP_001013598.1| - 0.25 11.4 7.5 0.28 11.3 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|124028278|ref|YP_001013598.1| - 2 8.2 5.8 3.3 7.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Aminotran_3 PF00202.21 gi|124028279|ref|YP_001013599.1| - 7.7e-57 192.8 0.0 9.8e-57 192.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Bclx_interact PF08945.10 gi|124028279|ref|YP_001013599.1| - 0.095 12.5 0.9 0.37 10.6 0.1 2.1 2 0 0 2 2 2 0 Bcl-x interacting, BH3 domain DapB_N PF01113.20 gi|124028280|ref|YP_001013600.1| - 2e-05 24.7 0.1 3.8e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|124028280|ref|YP_001013600.1| - 0.012 15.9 0.9 0.17 12.2 0.0 2.9 3 0 0 3 3 3 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|124028280|ref|YP_001013600.1| - 0.15 12.6 0.2 1.6 9.4 0.1 2.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Glycos_transf_4 PF00953.21 gi|124028281|ref|YP_001013601.1| - 9.2e-29 100.5 16.1 9.2e-29 100.5 16.1 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 4 ATP_bind_1 PF03029.17 gi|124028282|ref|YP_001013602.1| - 2.1e-55 188.1 0.0 2.5e-55 187.9 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|124028282|ref|YP_001013602.1| - 4.3e-06 26.4 0.0 0.00011 21.8 0.0 2.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|124028282|ref|YP_001013602.1| - 3.5e-05 23.8 0.1 0.00044 20.3 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase SRP54 PF00448.22 gi|124028282|ref|YP_001013602.1| - 8.3e-05 22.3 0.0 0.091 12.4 0.0 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|124028282|ref|YP_001013602.1| - 0.00017 20.7 0.1 0.022 13.7 0.1 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|124028282|ref|YP_001013602.1| - 0.00023 21.1 0.0 0.00038 20.4 0.0 1.2 1 0 0 1 1 1 1 NTPase AAA_22 PF13401.6 gi|124028282|ref|YP_001013602.1| - 0.00027 21.2 0.0 0.00071 19.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|124028282|ref|YP_001013602.1| - 0.00059 20.0 0.0 0.00089 19.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|124028282|ref|YP_001013602.1| - 0.00065 19.5 0.0 0.0011 18.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|124028282|ref|YP_001013602.1| - 0.00082 19.0 0.1 0.84 9.2 0.0 2.4 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|124028282|ref|YP_001013602.1| - 0.0018 18.0 0.0 0.004 16.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|124028282|ref|YP_001013602.1| - 0.0018 18.7 0.0 0.0027 18.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_PrkA PF08298.11 gi|124028282|ref|YP_001013602.1| - 0.0022 17.0 0.0 0.0036 16.3 0.0 1.5 1 0 0 1 1 1 1 PrkA AAA domain AAA_31 PF13614.6 gi|124028282|ref|YP_001013602.1| - 0.0024 17.8 0.0 0.099 12.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|124028282|ref|YP_001013602.1| - 0.0032 17.4 0.4 0.13 12.2 0.1 2.9 3 1 0 3 3 3 1 RsgA GTPase CbiA PF01656.23 gi|124028282|ref|YP_001013602.1| - 0.005 16.9 0.0 0.0064 16.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|124028282|ref|YP_001013602.1| - 0.0095 16.5 0.0 0.014 15.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_5 PF07728.14 gi|124028282|ref|YP_001013602.1| - 0.026 14.5 0.0 0.071 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.20 gi|124028282|ref|YP_001013602.1| - 0.026 14.4 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MipZ PF09140.11 gi|124028282|ref|YP_001013602.1| - 0.032 13.5 0.0 0.11 11.7 0.0 1.8 1 1 0 1 1 1 0 ATPase MipZ ArsA_ATPase PF02374.15 gi|124028282|ref|YP_001013602.1| - 0.032 13.4 0.0 0.22 10.7 0.0 2.0 2 0 0 2 2 2 0 Anion-transporting ATPase Dynamin_N PF00350.23 gi|124028282|ref|YP_001013602.1| - 0.058 13.4 0.3 6.3 6.8 0.0 2.3 2 0 0 2 2 2 0 Dynamin family AAA_28 PF13521.6 gi|124028282|ref|YP_001013602.1| - 0.062 13.5 0.0 0.24 11.6 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|124028282|ref|YP_001013602.1| - 0.065 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|124028282|ref|YP_001013602.1| - 0.076 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|124028282|ref|YP_001013602.1| - 0.088 12.0 0.1 0.15 11.2 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain T2SSE PF00437.20 gi|124028282|ref|YP_001013602.1| - 0.11 11.5 0.0 0.19 10.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|124028282|ref|YP_001013602.1| - 0.16 12.4 0.0 0.29 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Wzz PF02706.15 gi|124028283|ref|YP_001013603.1| - 1.1 9.6 4.1 3 8.2 1.9 2.0 2 0 0 2 2 2 0 Chain length determinant protein Arch_flagellin PF01917.16 gi|124028283|ref|YP_001013603.1| - 2.7 8.2 0.0 2.7 8.2 0.0 2.1 1 1 1 2 2 2 0 Archaebacterial flagellin DFP PF04127.15 gi|124028284|ref|YP_001013604.1| - 7.4e-60 202.0 1.0 1.1e-57 194.9 0.0 2.4 2 1 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|124028284|ref|YP_001013604.1| - 1.8e-23 83.0 0.1 3.1e-23 82.3 0.1 1.3 1 0 0 1 1 1 1 Flavoprotein Vut_1 PF02592.15 gi|124028285|ref|YP_001013605.1| - 1e-48 165.5 7.9 1e-48 165.5 7.9 1.5 2 0 0 2 2 2 1 Putative vitamin uptake transporter PGG PF13962.6 gi|124028285|ref|YP_001013605.1| - 5.2 6.9 12.0 7.3 6.4 0.1 3.0 2 1 0 2 2 2 0 Domain of unknown function ABC2_membrane PF01061.24 gi|124028286|ref|YP_001013606.1| - 7.4e-10 38.6 22.1 1.3e-09 37.8 22.1 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane PF01061.24 gi|124028287|ref|YP_001013607.1| - 1.8e-06 27.5 18.4 5.4e-06 26.0 18.4 1.8 1 1 0 1 1 1 1 ABC-2 type transporter DUF4605 PF15378.6 gi|124028287|ref|YP_001013607.1| - 0.032 14.1 1.0 0.032 14.1 1.0 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4605) ABC2_membrane_3 PF12698.7 gi|124028287|ref|YP_001013607.1| - 0.36 9.9 24.4 0.072 12.2 17.8 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|124028288|ref|YP_001013608.1| - 1.1e-25 90.7 0.0 1.7e-25 90.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124028288|ref|YP_001013608.1| - 1.4e-15 57.9 0.1 1.4e-10 41.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|124028288|ref|YP_001013608.1| - 1.6e-05 25.5 0.0 3.3e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|124028288|ref|YP_001013608.1| - 0.00011 22.1 0.0 0.068 12.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|124028288|ref|YP_001013608.1| - 0.0014 18.3 0.1 0.0046 16.7 0.1 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|124028288|ref|YP_001013608.1| - 0.014 15.9 0.0 0.022 15.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|124028288|ref|YP_001013608.1| - 0.026 14.4 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|124028288|ref|YP_001013608.1| - 0.03 14.7 0.1 0.17 12.3 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MukB PF04310.12 gi|124028288|ref|YP_001013608.1| - 0.039 13.8 0.1 0.076 12.8 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal ACT PF01842.25 gi|124028288|ref|YP_001013608.1| - 0.051 13.4 0.0 0.21 11.4 0.0 2.0 2 0 0 2 2 2 0 ACT domain IstB_IS21 PF01695.17 gi|124028288|ref|YP_001013608.1| - 0.055 13.2 0.1 1.6 8.4 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|124028288|ref|YP_001013608.1| - 0.07 13.4 0.3 1.3 9.3 0.3 2.4 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|124028288|ref|YP_001013608.1| - 0.2 11.1 0.0 16 4.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Cation_efflux PF01545.21 gi|124028289|ref|YP_001013609.1| - 1.4e-19 70.6 13.3 1.8e-19 70.3 13.3 1.1 1 0 0 1 1 1 1 Cation efflux family Glyco_hydro_130 PF04041.13 gi|124028290|ref|YP_001013610.1| - 9.3e-85 284.4 0.2 1.1e-84 284.2 0.2 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase PIN PF01850.21 gi|124028291|ref|YP_001013611.1| - 4.3e-11 43.4 0.2 5.6e-11 43.0 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|124028291|ref|YP_001013611.1| - 0.059 14.1 0.1 0.072 13.9 0.1 1.1 1 0 0 1 1 1 0 PIN domain MazE_antitoxin PF04014.18 gi|124028292|ref|YP_001013612.1| - 4.3e-06 26.5 0.6 4.3e-06 26.5 0.6 1.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|124028292|ref|YP_001013612.1| - 0.021 14.8 0.1 0.026 14.5 0.1 1.5 1 1 0 1 1 1 0 MraZ protein, putative antitoxin-like DcrB PF08786.11 gi|124028292|ref|YP_001013612.1| - 0.14 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 DcrB PEPCK_GTP PF00821.18 gi|124028294|ref|YP_001013614.1| - 6.7e-106 354.1 0.0 8.4e-106 353.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|124028294|ref|YP_001013614.1| - 3.2e-57 193.6 0.0 4.2e-57 193.3 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain DUF2204 PF09970.9 gi|124028295|ref|YP_001013615.1| - 2.5e-75 252.1 1.2 2.8e-75 251.9 1.2 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) bact-PGI_C PF10432.9 gi|124028296|ref|YP_001013616.1| - 6.6e-32 110.6 0.0 9.3e-32 110.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|124028296|ref|YP_001013616.1| - 4.5e-09 36.3 0.0 1.1e-08 35.0 0.0 1.6 2 0 0 2 2 2 1 SIS domain SIS_2 PF13580.6 gi|124028296|ref|YP_001013616.1| - 0.14 12.2 1.2 1.7 8.7 0.0 2.6 2 1 0 3 3 3 0 SIS domain TGS PF02824.21 gi|124028297|ref|YP_001013617.1| - 0.014 15.4 0.0 0.049 13.7 0.0 1.9 1 1 1 2 2 2 0 TGS domain Nse5 PF08691.10 gi|124028298|ref|YP_001013618.1| - 0.057 12.1 0.0 0.064 11.9 0.0 1.0 1 0 0 1 1 1 0 DNA repair proteins Nse5 and Nse6 DUF1870 PF08965.10 gi|124028298|ref|YP_001013618.1| - 0.075 13.1 0.1 0.096 12.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1870) UbiD PF01977.16 gi|124028299|ref|YP_001013619.1| - 2.4e-152 507.5 0.2 2.8e-152 507.3 0.2 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ABC_tran PF00005.27 gi|124028300|ref|YP_001013620.1| - 2.4e-25 89.7 0.0 4.1e-25 88.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124028300|ref|YP_001013620.1| - 1.7e-12 47.8 0.1 1.9e-05 24.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|124028300|ref|YP_001013620.1| - 0.00017 22.0 0.1 0.00042 20.7 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|124028300|ref|YP_001013620.1| - 0.00052 20.6 0.2 0.00076 20.0 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|124028300|ref|YP_001013620.1| - 0.0023 18.4 0.0 0.011 16.2 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|124028300|ref|YP_001013620.1| - 0.0064 16.2 0.0 0.036 13.8 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|124028300|ref|YP_001013620.1| - 0.0076 16.4 0.0 0.48 10.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|124028300|ref|YP_001013620.1| - 0.0076 16.2 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea SMC_N PF02463.19 gi|124028300|ref|YP_001013620.1| - 0.0097 15.4 0.1 0.15 11.5 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain NACHT PF05729.12 gi|124028300|ref|YP_001013620.1| - 0.013 15.4 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.9 gi|124028300|ref|YP_001013620.1| - 0.026 13.3 0.0 2.6 6.7 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|124028300|ref|YP_001013620.1| - 0.026 14.2 0.2 0.09 12.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|124028300|ref|YP_001013620.1| - 0.027 14.4 0.0 0.047 13.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|124028300|ref|YP_001013620.1| - 0.028 14.2 0.1 0.092 12.5 0.0 1.9 1 1 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|124028300|ref|YP_001013620.1| - 0.031 13.5 0.1 0.071 12.3 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.6 gi|124028300|ref|YP_001013620.1| - 0.036 13.6 0.1 0.45 10.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|124028300|ref|YP_001013620.1| - 0.039 14.2 0.0 0.08 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|124028300|ref|YP_001013620.1| - 0.041 13.9 0.1 0.13 12.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|124028300|ref|YP_001013620.1| - 0.056 13.7 0.0 0.27 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|124028300|ref|YP_001013620.1| - 0.066 11.8 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|124028300|ref|YP_001013620.1| - 0.07 12.7 0.0 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|124028300|ref|YP_001013620.1| - 0.076 13.6 0.0 0.36 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|124028300|ref|YP_001013620.1| - 0.099 12.7 0.1 1.6 8.9 0.1 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|124028300|ref|YP_001013620.1| - 0.14 12.1 0.1 3.2 7.6 0.1 2.1 2 0 0 2 2 2 0 NTPase ATP-synt_ab PF00006.25 gi|124028300|ref|YP_001013620.1| - 0.14 11.8 0.1 0.16 11.6 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.6 gi|124028300|ref|YP_001013620.1| - 0.17 11.6 0.0 1.3 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|124028300|ref|YP_001013620.1| - 0.17 9.4 0.1 0.23 8.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DLIC PF05783.11 gi|124028300|ref|YP_001013620.1| - 0.26 10.1 0.0 0.38 9.5 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) BPD_transp_1 PF00528.22 gi|124028301|ref|YP_001013621.1| - 4.2e-15 56.0 17.5 4.2e-15 56.0 17.5 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.6 gi|124028302|ref|YP_001013622.1| - 6.8e-23 81.7 0.1 1.2e-22 80.8 0.1 1.3 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|124028302|ref|YP_001013622.1| - 3.2e-09 37.1 0.0 1.1e-08 35.3 0.0 1.7 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|124028302|ref|YP_001013622.1| - 3.2e-08 33.5 0.0 4.7e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OpuAC PF04069.12 gi|124028302|ref|YP_001013622.1| - 1.2e-07 31.6 0.1 4.7e-07 29.7 0.1 1.8 1 1 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_3 PF00497.20 gi|124028302|ref|YP_001013622.1| - 5.6e-07 29.2 0.1 1.2e-05 24.8 0.0 2.4 1 1 2 3 3 3 2 Bacterial extracellular solute-binding proteins, family 3 NMT1_3 PF16868.5 gi|124028302|ref|YP_001013622.1| - 0.002 17.6 0.0 0.34 10.3 0.0 2.1 1 1 1 2 2 2 2 NMT1-like family LysR_substrate PF03466.20 gi|124028302|ref|YP_001013622.1| - 0.027 13.8 0.2 9.1 5.6 0.0 2.9 2 1 0 3 3 3 0 LysR substrate binding domain TPP_enzyme_C PF02775.21 gi|124028304|ref|YP_001013624.1| - 6.5e-29 100.7 0.1 1.4e-28 99.7 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|124028304|ref|YP_001013624.1| - 1.6e-15 57.5 0.0 2.4e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|124028304|ref|YP_001013624.1| - 3.4e-10 39.3 15.4 2.9e-07 30.0 4.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|124028304|ref|YP_001013624.1| - 1.9e-06 28.0 9.8 4.6e-06 26.7 9.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124028304|ref|YP_001013624.1| - 1.4e-05 25.1 12.2 0.00017 21.6 12.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|124028304|ref|YP_001013624.1| - 1.6e-05 25.4 13.2 0.0015 19.0 13.0 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124028304|ref|YP_001013624.1| - 1.6e-05 24.7 11.6 0.00028 20.8 2.0 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|124028304|ref|YP_001013624.1| - 2.8e-05 23.9 19.6 0.0021 18.1 1.7 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|124028304|ref|YP_001013624.1| - 5.1e-05 22.9 0.7 0.00019 21.1 0.2 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_10 PF13237.6 gi|124028304|ref|YP_001013624.1| - 5.5e-05 23.2 11.8 0.0002 21.4 12.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124028304|ref|YP_001013624.1| - 0.0001 22.5 12.7 0.015 15.7 3.3 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Transketolase_C PF02780.20 gi|124028304|ref|YP_001013624.1| - 0.0033 17.3 0.0 0.028 14.3 0.0 2.4 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4_16 PF13484.6 gi|124028304|ref|YP_001013624.1| - 0.0067 17.3 1.4 0.0067 17.3 1.4 2.7 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain PFOR_II PF17147.4 gi|124028304|ref|YP_001013624.1| - 0.013 15.8 0.1 0.042 14.1 0.0 1.9 2 0 0 2 2 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Fer4_3 PF12798.7 gi|124028304|ref|YP_001013624.1| - 0.02 15.8 4.7 0.02 15.8 4.7 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_11 PF13247.6 gi|124028304|ref|YP_001013624.1| - 0.032 14.3 4.3 0.064 13.4 4.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain DXP_synthase_N PF13292.6 gi|124028304|ref|YP_001013624.1| - 0.068 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_17 PF13534.6 gi|124028304|ref|YP_001013624.1| - 0.16 12.5 12.8 0.079 13.5 1.6 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|124028304|ref|YP_001013624.1| - 0.19 12.3 11.3 2.5 8.7 2.1 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|124028304|ref|YP_001013624.1| - 1.1 9.7 13.2 1.7 9.2 2.2 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR PF01558.18 gi|124028305|ref|YP_001013625.1| - 4.6e-34 118.0 0.0 5.2e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase CHB_HEX_C_1 PF13290.6 gi|124028306|ref|YP_001013626.1| - 0.012 15.6 0.8 0.018 15.0 0.8 1.2 1 0 0 1 1 1 0 Chitobiase/beta-hexosaminidase C-terminal domain Fn3_assoc PF13287.6 gi|124028306|ref|YP_001013626.1| - 0.089 13.0 0.4 0.13 12.4 0.4 1.2 1 0 0 1 1 1 0 Fn3 associated SIR2 PF02146.17 gi|124028307|ref|YP_001013627.1| - 7.5e-55 185.6 0.0 9.2e-55 185.3 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Phos_pyr_kin PF08543.12 gi|124028308|ref|YP_001013628.1| - 3.3e-79 265.8 0.0 4.5e-79 265.3 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|124028308|ref|YP_001013628.1| - 2.2e-59 199.8 2.1 3.7e-59 199.1 2.1 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|124028308|ref|YP_001013628.1| - 2.6e-09 36.8 0.1 7.2e-09 35.4 0.1 1.6 1 1 0 1 1 1 1 pfkB family carbohydrate kinase FAD-oxidase_C PF02913.19 gi|124028309|ref|YP_001013629.1| - 1.3e-61 208.4 0.0 3.1e-61 207.2 0.0 1.6 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|124028309|ref|YP_001013629.1| - 6.9e-36 123.0 0.1 1.7e-35 121.8 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|124028310|ref|YP_001013630.1| - 9.2e-11 42.0 1.5 1.2e-10 41.6 1.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|124028310|ref|YP_001013630.1| - 3.6e-09 37.0 2.1 6e-09 36.3 2.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|124028310|ref|YP_001013630.1| - 2.3e-07 30.3 13.3 0.001 18.8 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|124028310|ref|YP_001013630.1| - 8.6e-07 29.5 7.7 1.7e-05 25.3 8.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|124028310|ref|YP_001013630.1| - 4.2e-06 26.8 18.3 0.0005 20.1 10.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|124028310|ref|YP_001013630.1| - 4.5e-06 26.8 1.0 0.0072 16.5 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|124028310|ref|YP_001013630.1| - 9.2e-06 25.5 11.4 0.012 15.6 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|124028310|ref|YP_001013630.1| - 9.2e-06 25.7 8.7 0.00037 20.6 9.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124028310|ref|YP_001013630.1| - 2.6e-05 24.4 8.4 0.0078 16.6 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|124028310|ref|YP_001013630.1| - 0.00035 20.6 4.1 0.17 12.0 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124028310|ref|YP_001013630.1| - 0.00069 20.5 10.1 0.0068 17.3 10.6 2.0 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|124028310|ref|YP_001013630.1| - 0.00071 19.5 13.0 0.016 15.3 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|124028310|ref|YP_001013630.1| - 0.043 13.6 6.7 0.32 10.8 2.4 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 gi|124028310|ref|YP_001013630.1| - 0.046 14.5 2.0 4 8.3 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|124028310|ref|YP_001013630.1| - 0.064 14.2 15.8 0.18 12.8 3.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|124028310|ref|YP_001013630.1| - 0.075 13.9 6.8 2.5 9.0 0.2 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain SBP_bac_1 PF01547.25 gi|124028312|ref|YP_001013632.1| - 4.9e-31 108.9 9.5 1.8e-30 107.0 9.5 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|124028312|ref|YP_001013632.1| - 1.1e-10 41.8 11.6 1.4e-10 41.4 11.3 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|124028313|ref|YP_001013633.1| - 1.8e-15 57.2 14.0 1.8e-15 57.2 14.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2770 PF10968.8 gi|124028313|ref|YP_001013633.1| - 1.4 8.9 6.2 0.73 9.9 2.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2770) BPD_transp_1 PF00528.22 gi|124028314|ref|YP_001013634.1| - 4.4e-10 39.6 21.2 4.4e-10 39.6 21.2 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3394 PF11874.8 gi|124028314|ref|YP_001013634.1| - 0.082 12.6 1.2 0.16 11.7 1.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3394) ABC_tran PF00005.27 gi|124028315|ref|YP_001013635.1| - 7e-36 123.8 0.0 1.1e-35 123.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124028315|ref|YP_001013635.1| - 1.9e-08 34.5 3.0 0.0018 18.2 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|124028315|ref|YP_001013635.1| - 0.00011 22.3 0.0 0.00034 20.7 0.0 1.9 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|124028315|ref|YP_001013635.1| - 0.00015 21.3 0.5 0.44 9.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|124028315|ref|YP_001013635.1| - 0.002 18.4 0.4 0.015 15.6 0.1 2.6 3 0 0 3 3 3 1 TOBE domain AAA_29 PF13555.6 gi|124028315|ref|YP_001013635.1| - 0.0036 17.0 0.0 0.0079 15.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain OB_MalK PF17912.1 gi|124028315|ref|YP_001013635.1| - 0.0042 17.9 0.2 0.045 14.6 0.1 2.5 2 0 0 2 2 2 1 MalK OB fold domain AAA_23 PF13476.6 gi|124028315|ref|YP_001013635.1| - 0.0058 17.1 1.0 0.0067 17.0 0.1 1.5 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|124028315|ref|YP_001013635.1| - 0.011 15.3 0.0 0.027 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|124028315|ref|YP_001013635.1| - 0.027 14.2 0.0 0.066 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain RecA PF00154.21 gi|124028315|ref|YP_001013635.1| - 0.044 13.3 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_16 PF13191.6 gi|124028315|ref|YP_001013635.1| - 0.069 13.5 0.9 0.27 11.6 0.9 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|124028315|ref|YP_001013635.1| - 0.083 13.3 0.1 0.8 10.1 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|124028315|ref|YP_001013635.1| - 0.086 12.7 0.2 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase NACHT PF05729.12 gi|124028315|ref|YP_001013635.1| - 0.12 12.3 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|124028315|ref|YP_001013635.1| - 0.16 12.3 1.3 0.52 10.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|124028315|ref|YP_001013635.1| - 0.23 10.2 0.8 7.4 5.3 0.1 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Spore_III_AB PF09548.10 gi|124028317|ref|YP_001013637.1| - 0.011 15.9 0.4 4.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) Snf7 PF03357.21 gi|124028317|ref|YP_001013637.1| - 0.049 13.2 5.3 0.09 12.4 5.3 1.4 1 1 0 1 1 1 0 Snf7 LOH1CR12 PF10158.9 gi|124028317|ref|YP_001013637.1| - 0.054 13.5 0.3 0.12 12.4 0.1 1.7 2 0 0 2 2 2 0 Tumour suppressor protein HK97-gp10_like PF04883.12 gi|124028317|ref|YP_001013637.1| - 0.21 12.6 1.0 6.2 7.9 0.0 2.5 2 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component ABC_tran_CTD PF16326.5 gi|124028317|ref|YP_001013637.1| - 8.7 6.7 12.3 11 6.4 3.7 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain Peptidase_M20 PF01546.28 gi|124028318|ref|YP_001013638.1| - 2.6e-42 144.9 0.0 3.4e-42 144.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|124028318|ref|YP_001013638.1| - 2.2e-20 72.6 0.0 4.3e-20 71.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|124028318|ref|YP_001013638.1| - 4.2e-05 23.3 0.0 0.00011 21.9 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M28 HGTP_anticodon PF03129.20 gi|124028318|ref|YP_001013638.1| - 0.073 13.2 0.0 9.4 6.5 0.0 2.4 2 0 0 2 2 2 0 Anticodon binding domain Phosphonate-bd PF12974.7 gi|124028318|ref|YP_001013638.1| - 0.12 11.9 0.1 0.77 9.3 0.0 2.0 2 0 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein PadR PF03551.14 gi|124028320|ref|YP_001013640.1| - 1.6e-17 63.2 0.5 3e-17 62.3 0.5 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|124028320|ref|YP_001013640.1| - 0.0005 19.9 0.0 0.85 9.5 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family RTP PF02334.16 gi|124028320|ref|YP_001013640.1| - 0.0014 19.2 0.0 0.0032 18.1 0.0 1.6 2 0 0 2 2 2 1 Replication terminator protein TrmB PF01978.19 gi|124028320|ref|YP_001013640.1| - 0.0036 17.1 1.2 0.12 12.3 0.1 2.8 3 1 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|124028320|ref|YP_001013640.1| - 0.0043 16.9 1.3 0.007 16.2 0.2 2.0 2 1 0 2 2 2 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|124028320|ref|YP_001013640.1| - 0.013 15.4 0.0 0.056 13.4 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_34 PF13601.6 gi|124028320|ref|YP_001013640.1| - 0.076 13.2 0.0 0.18 12.0 0.0 1.8 1 1 1 2 2 2 0 Winged helix DNA-binding domain DUF2452 PF10504.9 gi|124028320|ref|YP_001013640.1| - 0.13 11.7 0.5 0.22 11.0 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2452) HisKA_3 PF07730.13 gi|124028320|ref|YP_001013640.1| - 0.22 12.1 4.2 0.29 11.7 2.7 1.9 2 1 1 3 3 3 0 Histidine kinase KfrA_N PF11740.8 gi|124028320|ref|YP_001013640.1| - 0.45 11.2 7.8 47 4.7 7.8 2.5 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term HypA PF01155.19 gi|124028321|ref|YP_001013641.1| - 0.00068 19.6 0.0 0.0012 18.9 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|124028321|ref|YP_001013641.1| - 0.046 13.7 0.7 12 6.0 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain FYDLN_acid PF09538.10 gi|124028321|ref|YP_001013641.1| - 0.047 14.4 0.0 0.075 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Zn-ribbon_8 PF09723.10 gi|124028321|ref|YP_001013641.1| - 0.11 12.6 0.3 0.23 11.6 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|124028321|ref|YP_001013641.1| - 0.19 11.7 2.2 2.1 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|124028321|ref|YP_001013641.1| - 0.51 10.3 2.7 17 5.4 0.3 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|124028321|ref|YP_001013641.1| - 0.52 9.8 4.4 9.5 5.8 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|124028321|ref|YP_001013641.1| - 3.3 7.6 5.3 6.1 6.8 0.9 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.13 gi|124028321|ref|YP_001013641.1| - 6 6.6 5.8 9.6 6.0 0.4 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.9 gi|124028321|ref|YP_001013641.1| - 6.6 6.9 8.0 2.9 8.1 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Tautomerase_3 PF14832.6 gi|124028323|ref|YP_001013643.1| - 0.019 15.2 0.0 0.027 14.7 0.0 1.3 1 0 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme TPP_enzyme_M PF00205.22 gi|124028323|ref|YP_001013643.1| - 0.033 13.9 0.0 0.052 13.3 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain SPOR PF05036.13 gi|124028323|ref|YP_001013643.1| - 0.14 12.6 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Sporulation related domain Laminin_II PF06009.12 gi|124028324|ref|YP_001013644.1| - 0.0094 16.0 0.1 0.011 15.7 0.1 1.1 1 0 0 1 1 1 1 Laminin Domain II Prefoldin_2 PF01920.20 gi|124028324|ref|YP_001013644.1| - 0.014 15.3 0.1 0.02 14.8 0.1 1.3 1 0 0 1 1 1 0 Prefoldin subunit Med9 PF07544.13 gi|124028324|ref|YP_001013644.1| - 0.016 15.3 0.9 0.044 13.9 0.4 1.8 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 VirE_N PF08800.10 gi|124028324|ref|YP_001013644.1| - 0.018 15.2 0.0 0.019 15.1 0.0 1.1 1 0 0 1 1 1 0 VirE N-terminal domain DASH_Duo1 PF08651.10 gi|124028324|ref|YP_001013644.1| - 0.019 14.7 0.0 0.044 13.6 0.0 1.6 1 1 1 2 2 2 0 DASH complex subunit Duo1 CCDC53 PF10152.9 gi|124028324|ref|YP_001013644.1| - 0.019 15.4 0.7 0.02 15.3 0.7 1.2 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex ABC_tran_CTD PF16326.5 gi|124028324|ref|YP_001013644.1| - 0.02 15.1 1.7 0.026 14.8 1.7 1.2 1 0 0 1 1 1 0 ABC transporter C-terminal domain Serine_rich PF08824.10 gi|124028324|ref|YP_001013644.1| - 0.022 14.8 0.2 0.028 14.4 0.2 1.2 1 0 0 1 1 1 0 Serine rich protein interaction domain ALIX_LYPXL_bnd PF13949.6 gi|124028324|ref|YP_001013644.1| - 0.022 14.0 0.3 0.026 13.8 0.3 1.0 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Hemerythrin PF01814.23 gi|124028324|ref|YP_001013644.1| - 0.031 14.9 1.6 0.038 14.6 1.6 1.3 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Remorin_C PF03763.13 gi|124028324|ref|YP_001013644.1| - 0.04 13.8 0.0 0.046 13.6 0.0 1.1 1 0 0 1 1 1 0 Remorin, C-terminal region LPP PF04728.13 gi|124028324|ref|YP_001013644.1| - 0.047 14.1 0.3 0.07 13.5 0.3 1.4 1 1 0 1 1 1 0 Lipoprotein leucine-zipper Nsp1_C PF05064.13 gi|124028324|ref|YP_001013644.1| - 0.052 13.4 0.5 0.06 13.2 0.4 1.3 1 1 0 1 1 1 0 Nsp1-like C-terminal region DUF677 PF05055.12 gi|124028324|ref|YP_001013644.1| - 0.065 12.1 0.1 0.072 12.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Peptidase_M3_N PF08439.10 gi|124028324|ref|YP_001013644.1| - 0.071 13.4 2.1 4.7 7.5 2.9 2.8 2 1 0 2 2 2 0 Oligopeptidase F FlaC_arch PF05377.11 gi|124028324|ref|YP_001013644.1| - 0.08 13.3 0.7 0.14 12.5 0.5 1.6 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) XhlA PF10779.9 gi|124028324|ref|YP_001013644.1| - 0.1 12.8 0.3 0.16 12.2 0.3 1.3 1 0 0 1 1 1 0 Haemolysin XhlA FapA PF03961.13 gi|124028324|ref|YP_001013644.1| - 0.11 11.0 0.0 0.13 10.9 0.0 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A YojJ PF10372.9 gi|124028324|ref|YP_001013644.1| - 0.13 12.4 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial membrane-spanning protein N-terminus Val_tRNA-synt_C PF10458.9 gi|124028324|ref|YP_001013644.1| - 0.13 12.6 5.3 0.23 11.7 5.3 1.6 1 1 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm DUF4349 PF14257.6 gi|124028324|ref|YP_001013644.1| - 0.17 11.3 6.5 0.71 9.3 6.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4349) Bcr-Abl_Oligo PF09036.10 gi|124028324|ref|YP_001013644.1| - 0.17 11.9 1.2 0.3 11.1 0.4 1.7 2 0 0 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain Rx_N PF18052.1 gi|124028324|ref|YP_001013644.1| - 0.18 12.1 2.2 0.3 11.4 2.2 1.6 1 1 0 1 1 1 0 Rx N-terminal domain DELLA PF12041.8 gi|124028324|ref|YP_001013644.1| - 0.26 11.2 0.9 11 6.0 0.1 2.2 1 1 1 2 2 2 0 Transcriptional regulator DELLA protein N terminal Vac_Fusion PF02346.16 gi|124028324|ref|YP_001013644.1| - 0.68 9.6 5.3 1.6 8.4 4.4 2.0 1 1 1 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 HisKA PF00512.25 gi|124028324|ref|YP_001013644.1| - 0.71 10.0 6.5 0.89 9.6 2.2 2.1 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain SWIM PF04434.17 gi|124028325|ref|YP_001013645.1| - 0.012 15.3 0.2 0.02 14.5 0.2 1.4 1 0 0 1 1 1 0 SWIM zinc finger AAA_16 PF13191.6 gi|124028326|ref|YP_001013646.1| - 0.00095 19.6 0.1 0.00095 19.6 0.1 5.4 4 1 0 4 4 4 1 AAA ATPase domain KAP_NTPase PF07693.14 gi|124028326|ref|YP_001013646.1| - 0.0032 16.8 0.0 0.078 12.2 0.0 2.3 2 0 0 2 2 2 1 KAP family P-loop domain Ferritin PF00210.24 gi|124028326|ref|YP_001013646.1| - 0.024 14.6 11.1 0.089 12.7 0.5 4.3 4 0 0 4 4 4 0 Ferritin-like domain AAA_22 PF13401.6 gi|124028326|ref|YP_001013646.1| - 0.027 14.8 0.3 0.95 9.7 0.0 3.2 2 0 0 2 2 2 0 AAA domain SBP_bac_11 PF13531.6 gi|124028326|ref|YP_001013646.1| - 0.062 13.0 0.7 0.26 11.0 0.1 2.3 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Flg_hook PF02120.16 gi|124028326|ref|YP_001013646.1| - 0.087 12.7 0.2 0.72 9.8 0.1 2.7 3 0 0 3 3 3 0 Flagellar hook-length control protein FliK Acetyltransf_18 PF18014.1 gi|124028326|ref|YP_001013646.1| - 0.13 12.1 0.1 9.5 6.1 0.0 3.7 3 1 1 4 4 4 0 Acetyltransferase (GNAT) domain BLOC1_2 PF10046.9 gi|124028326|ref|YP_001013646.1| - 3.6 8.0 4.6 4.4 7.7 0.3 3.3 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Flu_B_NS1 PF02942.14 gi|124028327|ref|YP_001013647.1| - 0.25 10.4 0.0 0.47 9.5 0.0 1.4 1 0 0 1 1 1 0 Influenza B non-structural protein (NS1) Acylphosphatase PF00708.18 gi|124028328|ref|YP_001013648.1| - 4.5e-10 39.8 0.0 5e-10 39.6 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Radical_SAM PF04055.21 gi|124028330|ref|YP_001013650.1| - 2.3e-06 28.1 0.2 3.6e-06 27.5 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily YyzF PF14116.6 gi|124028330|ref|YP_001013650.1| - 0.091 12.8 0.6 0.23 11.5 0.1 1.9 2 0 0 2 2 2 0 YyzF-like protein Cyt_bd_oxida_I PF01654.17 gi|124028331|ref|YP_001013651.1| - 1.7e-18 66.5 15.8 1.7e-18 66.5 15.8 2.0 2 0 0 2 2 2 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_I PF01654.17 gi|124028332|ref|YP_001013652.1| - 2.2e-70 237.4 21.5 3.6e-69 233.4 21.5 2.2 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I MitoNEET_N PF10660.9 gi|124028332|ref|YP_001013652.1| - 3.9 7.6 6.9 4.2 7.5 0.6 3.2 3 0 0 3 3 3 0 Iron-containing outer mitochondrial membrane protein N-terminus Phage_holin_4_2 PF04020.13 gi|124028333|ref|YP_001013653.1| - 5.2 7.8 16.8 40 5.0 16.8 2.1 1 1 0 1 1 1 0 Mycobacterial 4 TMS phage holin, superfamily IV RHH_3 PF12651.7 gi|124028334|ref|YP_001013654.1| - 8.9e-18 64.0 0.0 1.6e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain NikR_C PF08753.11 gi|124028334|ref|YP_001013654.1| - 1.2e-07 31.7 0.0 7.8e-07 29.2 0.0 1.9 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|124028334|ref|YP_001013654.1| - 9.3e-07 28.6 0.0 1.6e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PPR_2 PF13041.6 gi|124028334|ref|YP_001013654.1| - 0.2 11.9 0.6 0.54 10.5 0.2 1.9 3 0 0 3 3 3 0 PPR repeat family ABC-3 PF00950.17 gi|124028335|ref|YP_001013655.1| - 3.1e-16 59.6 15.8 3.8e-16 59.4 15.8 1.1 1 0 0 1 1 1 1 ABC 3 transport family PspB PF06667.12 gi|124028335|ref|YP_001013655.1| - 0.047 13.8 0.8 20 5.3 0.3 3.3 3 0 0 3 3 3 0 Phage shock protein B FecCD PF01032.18 gi|124028335|ref|YP_001013655.1| - 0.054 12.5 17.8 0.065 12.2 17.8 1.1 1 0 0 1 1 1 0 FecCD transport family UbiA PF01040.18 gi|124028336|ref|YP_001013656.1| - 3.7e-40 137.8 26.1 4.4e-40 137.6 26.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF99 PF01949.16 gi|124028337|ref|YP_001013657.1| - 6.6e-49 165.8 0.0 7.8e-49 165.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF58 PF01882.18 gi|124028339|ref|YP_001013659.1| - 6.7e-22 77.6 0.0 1.5e-21 76.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|124028339|ref|YP_001013659.1| - 1.8e-05 24.9 0.9 3.4e-05 24.0 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF11 Alpha-E PF04168.12 gi|124028339|ref|YP_001013659.1| - 0.11 12.2 0.0 0.25 11.1 0.0 1.4 1 1 0 1 1 1 0 A predicted alpha-helical domain with a conserved ER motif. AAA_3 PF07726.11 gi|124028340|ref|YP_001013660.1| - 2.3e-58 195.7 0.0 4.4e-58 194.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|124028340|ref|YP_001013660.1| - 5.2e-22 78.3 0.0 1.5e-21 76.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|124028340|ref|YP_001013660.1| - 3.7e-19 68.3 2.6 7.4e-19 67.4 2.6 1.5 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|124028340|ref|YP_001013660.1| - 1e-07 32.4 0.0 2.1e-07 31.4 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|124028340|ref|YP_001013660.1| - 1.3e-06 28.2 0.0 9.8e-06 25.4 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|124028340|ref|YP_001013660.1| - 1.5e-06 28.0 0.0 4.6e-05 23.2 0.0 2.7 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|124028340|ref|YP_001013660.1| - 6.2e-06 25.7 0.6 0.028 13.8 0.1 2.5 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|124028340|ref|YP_001013660.1| - 1.3e-05 24.4 0.0 0.00015 21.0 0.0 2.4 1 1 0 1 1 1 1 MCM P-loop domain AAA_30 PF13604.6 gi|124028340|ref|YP_001013660.1| - 0.013 15.2 0.0 3.4 7.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain MCM_lid PF17855.1 gi|124028340|ref|YP_001013660.1| - 0.018 15.5 0.1 0.042 14.3 0.1 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain AAA_16 PF13191.6 gi|124028340|ref|YP_001013660.1| - 0.028 14.8 0.1 0.16 12.3 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|124028341|ref|YP_001013661.1| - 1.1e-08 35.3 0.0 7.2e-08 32.6 0.0 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|124028341|ref|YP_001013661.1| - 0.0035 17.7 0.9 0.02 15.3 0.1 2.4 3 0 0 3 3 3 1 AAA ATPase domain Polysacc_synt_C PF14667.6 gi|124028342|ref|YP_001013662.1| - 0.0021 18.1 47.1 0.0032 17.5 10.5 3.1 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain TauE PF01925.19 gi|124028343|ref|YP_001013663.1| - 0.011 15.4 7.0 0.012 15.3 7.0 1.0 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE TauE PF01925.19 gi|124028344|ref|YP_001013664.1| - 3.7e-09 36.6 9.9 4.6e-09 36.3 9.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2070 PF09843.9 gi|124028344|ref|YP_001013664.1| - 0.11 10.8 3.1 0.12 10.6 3.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Caa3_CtaG PF09678.10 gi|124028344|ref|YP_001013664.1| - 0.5 9.8 10.0 0.35 10.3 4.8 2.1 1 1 1 2 2 2 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) RHH_1 PF01402.21 gi|124028345|ref|YP_001013665.1| - 0.00073 19.4 0.1 0.0059 16.5 0.0 2.3 1 1 2 3 3 3 1 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|124028345|ref|YP_001013665.1| - 0.012 15.5 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 CheR_N PF03705.15 gi|124028345|ref|YP_001013665.1| - 0.014 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 CheR methyltransferase, all-alpha domain HTH_22 PF13309.6 gi|124028345|ref|YP_001013665.1| - 0.066 13.3 0.4 0.12 12.4 0.4 1.4 1 0 0 1 1 1 0 HTH domain HMA PF00403.26 gi|124028345|ref|YP_001013665.1| - 0.11 13.0 1.3 9.9 6.7 0.6 2.3 2 1 0 2 2 2 0 Heavy-metal-associated domain ATP-sulfurylase PF01747.17 gi|124028346|ref|YP_001013666.1| - 4.3e-89 297.6 0.1 5.6e-89 297.2 0.1 1.1 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|124028346|ref|YP_001013666.1| - 1.3e-56 190.7 0.0 1.8e-56 190.2 0.0 1.2 1 0 0 1 1 1 1 PUA-like domain PIN_9 PF18477.1 gi|124028347|ref|YP_001013667.1| - 0.0008 19.7 0.0 0.00087 19.6 0.0 1.2 1 0 0 1 1 1 1 PIN like domain DUF348 PF03990.14 gi|124028347|ref|YP_001013667.1| - 0.017 14.8 0.0 0.041 13.6 0.1 1.6 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Aldo_ket_red PF00248.21 gi|124028347|ref|YP_001013667.1| - 0.14 11.3 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Aldo/keto reductase family CcdA PF07362.12 gi|124028348|ref|YP_001013668.1| - 2.3e-08 34.3 0.3 3.3e-08 33.8 0.3 1.3 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA PSK_trans_fac PF07704.11 gi|124028348|ref|YP_001013668.1| - 0.00051 20.8 2.7 0.00067 20.4 2.7 1.4 1 1 0 1 1 1 1 Rv0623-like transcription factor RHH_1 PF01402.21 gi|124028348|ref|YP_001013668.1| - 0.011 15.6 0.4 0.011 15.6 0.4 2.4 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|124028348|ref|YP_001013668.1| - 0.014 15.4 0.3 0.046 13.7 0.3 1.8 1 1 0 1 1 1 0 Ribbon-helix-helix domain Phosphodiest PF01663.22 gi|124028349|ref|YP_001013669.1| - 4.3e-55 187.7 0.9 5.3e-55 187.5 0.9 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|124028349|ref|YP_001013669.1| - 0.021 14.2 0.1 0.039 13.4 0.1 1.5 2 0 0 2 2 2 0 Sulfatase Peptidase_C37 PF05416.12 gi|124028350|ref|YP_001013670.1| - 0.033 12.7 0.9 0.038 12.5 0.9 1.0 1 0 0 1 1 1 0 Southampton virus-type processing peptidase YcgL PF05166.13 gi|124028350|ref|YP_001013670.1| - 0.035 14.5 0.3 0.051 13.9 0.3 1.4 1 1 0 1 1 1 0 YcgL domain FolB PF02152.18 gi|124028350|ref|YP_001013670.1| - 0.059 13.9 0.2 0.067 13.7 0.2 1.1 1 0 0 1 1 1 0 Dihydroneopterin aldolase Glycos_transf_1 PF00534.20 gi|124028351|ref|YP_001013671.1| - 9.5e-30 103.4 0.2 1.7e-29 102.6 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|124028351|ref|YP_001013671.1| - 1.1e-17 64.7 0.0 1.8e-17 64.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|124028351|ref|YP_001013671.1| - 1.6e-15 57.6 0.1 5.8e-15 55.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|124028351|ref|YP_001013671.1| - 3.5e-06 27.3 0.0 8.8e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|124028351|ref|YP_001013671.1| - 0.0056 17.1 0.0 1.8 9.0 0.0 2.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain ALG11_N PF15924.5 gi|124028351|ref|YP_001013671.1| - 0.035 14.2 0.8 0.056 13.5 0.2 1.6 2 0 0 2 2 2 0 ALG11 mannosyltransferase N-terminus Carbam_trans_C PF16861.5 gi|124028351|ref|YP_001013671.1| - 0.052 13.1 0.1 0.22 11.1 0.1 1.9 1 1 0 1 1 1 0 Carbamoyltransferase C-terminus Pyr_redox PF00070.27 gi|124028351|ref|YP_001013671.1| - 0.12 13.0 0.1 2.2 8.9 0.0 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_trans_1_4 PF13692.6 gi|124028352|ref|YP_001013672.1| - 1e-09 38.9 0.0 1.9e-09 38.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|124028352|ref|YP_001013672.1| - 1.6e-09 37.6 0.0 4.1e-09 36.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Fucose_iso_N2 PF07882.12 gi|124028352|ref|YP_001013672.1| - 0.0011 18.5 0.1 0.3 10.6 0.0 2.3 2 0 0 2 2 2 2 L-fucose isomerase, second N-terminal domain Phosphodiest PF01663.22 gi|124028353|ref|YP_001013673.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.0 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|124028354|ref|YP_001013674.1| - 9.4e-06 25.8 0.0 1.1e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 PglZ domain Metalloenzyme PF01676.18 gi|124028354|ref|YP_001013674.1| - 1.1e-05 24.9 0.0 1.2e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|124028354|ref|YP_001013674.1| - 3.1e-05 23.7 0.0 3.4e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase GST_C_6 PF17171.4 gi|124028354|ref|YP_001013674.1| - 0.049 13.4 0.0 0.084 12.7 0.0 1.4 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Sulfatase PF00884.23 gi|124028354|ref|YP_001013674.1| - 0.077 12.4 0.0 0.077 12.4 0.0 1.1 1 0 0 1 1 1 0 Sulfatase TatC PF00902.18 gi|124028355|ref|YP_001013675.1| - 1.3e-40 139.5 18.7 1.6e-40 139.2 18.7 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) 23S_rRNA_IVP PF05635.11 gi|124028355|ref|YP_001013675.1| - 0.057 13.7 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 23S rRNA-intervening sequence protein MttA_Hcf106 PF02416.16 gi|124028356|ref|YP_001013676.1| - 7.6e-19 66.8 1.4 1.3e-18 66.1 1.4 1.6 1 1 0 1 1 1 1 mttA/Hcf106 family Rho_N PF07498.12 gi|124028356|ref|YP_001013676.1| - 0.0041 17.0 1.6 0.012 15.5 1.8 1.7 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain IIGP PF05049.13 gi|124028356|ref|YP_001013676.1| - 0.034 13.2 0.1 0.039 13.0 0.1 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) Ibs_toxin PF13956.6 gi|124028356|ref|YP_001013676.1| - 0.042 13.9 1.2 0.062 13.3 1.2 1.3 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system Cse1 PF08506.10 gi|124028356|ref|YP_001013676.1| - 0.043 12.6 0.5 0.049 12.5 0.5 1.0 1 0 0 1 1 1 0 Cse1 DUF5510 PF17629.2 gi|124028356|ref|YP_001013676.1| - 0.081 12.9 0.2 0.14 12.1 0.2 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5510) ABC2_membrane_4 PF12730.7 gi|124028357|ref|YP_001013677.1| - 0.00026 21.0 7.7 0.00026 21.0 7.7 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ELO PF01151.18 gi|124028357|ref|YP_001013677.1| - 0.019 14.5 2.4 0.35 10.4 1.8 2.1 1 1 1 2 2 2 0 GNS1/SUR4 family DUF2921 PF11145.8 gi|124028358|ref|YP_001013678.1| - 0.18 9.6 0.0 0.18 9.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2921) MitoNEET_N PF10660.9 gi|124028358|ref|YP_001013678.1| - 0.36 10.9 2.1 0.55 10.3 1.3 1.7 1 1 1 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus Cytochrom_C_asm PF01578.20 gi|124028359|ref|YP_001013679.1| - 1.2e-23 84.0 4.6 2.4e-23 83.0 4.6 1.5 1 0 0 1 1 1 1 Cytochrome C assembly protein ABC_tran PF00005.27 gi|124028360|ref|YP_001013680.1| - 2.9e-26 92.6 0.0 3.7e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|124028360|ref|YP_001013680.1| - 8.5e-13 48.8 0.0 4.6e-07 29.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|124028360|ref|YP_001013680.1| - 7.4e-06 25.9 0.0 0.00015 21.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|124028360|ref|YP_001013680.1| - 2.9e-05 24.7 0.0 4.2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|124028360|ref|YP_001013680.1| - 0.0001 22.1 0.0 0.00022 21.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|124028360|ref|YP_001013680.1| - 0.00015 21.4 0.0 0.00029 20.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|124028360|ref|YP_001013680.1| - 0.00029 21.3 0.3 0.00062 20.2 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|124028360|ref|YP_001013680.1| - 0.0011 19.2 0.1 0.0033 17.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|124028360|ref|YP_001013680.1| - 0.0013 18.7 0.0 0.003 17.5 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_28 PF13521.6 gi|124028360|ref|YP_001013680.1| - 0.0037 17.5 0.0 0.0063 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|124028360|ref|YP_001013680.1| - 0.0046 16.6 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|124028360|ref|YP_001013680.1| - 0.0049 17.0 0.0 0.01 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|124028360|ref|YP_001013680.1| - 0.0049 16.5 0.0 0.0085 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|124028360|ref|YP_001013680.1| - 0.0074 15.8 0.0 0.027 13.9 0.0 1.7 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|124028360|ref|YP_001013680.1| - 0.012 14.7 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF3584 PF12128.8 gi|124028360|ref|YP_001013680.1| - 0.012 13.2 0.0 0.016 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ATPase_2 PF01637.18 gi|124028360|ref|YP_001013680.1| - 0.012 15.6 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|124028360|ref|YP_001013680.1| - 0.019 15.0 0.1 0.04 13.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|124028360|ref|YP_001013680.1| - 0.019 14.6 0.1 0.028 14.0 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|124028360|ref|YP_001013680.1| - 0.021 15.3 0.1 0.046 14.1 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|124028360|ref|YP_001013680.1| - 0.022 15.3 0.1 0.032 14.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|124028360|ref|YP_001013680.1| - 0.03 13.9 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|124028360|ref|YP_001013680.1| - 0.032 14.1 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_13 PF13166.6 gi|124028360|ref|YP_001013680.1| - 0.033 12.8 0.0 0.041 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|124028360|ref|YP_001013680.1| - 0.039 13.9 0.0 0.063 13.2 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|124028360|ref|YP_001013680.1| - 0.041 13.2 0.0 0.079 12.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|124028360|ref|YP_001013680.1| - 0.094 12.6 0.0 0.22 11.4 0.0 1.5 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 gi|124028360|ref|YP_001013680.1| - 0.095 12.7 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|124028360|ref|YP_001013680.1| - 0.15 11.9 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PhoH PF02562.16 gi|124028360|ref|YP_001013680.1| - 0.16 11.4 0.0 0.67 9.4 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein DLIC PF05783.11 gi|124028360|ref|YP_001013680.1| - 0.16 10.8 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC_ATPase PF09818.9 gi|124028360|ref|YP_001013680.1| - 0.16 10.7 0.4 0.37 9.5 0.2 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.12 gi|124028360|ref|YP_001013680.1| - 0.17 11.1 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.22 gi|124028360|ref|YP_001013680.1| - 0.17 11.0 0.0 0.62 9.2 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain TsaE PF02367.17 gi|124028360|ref|YP_001013680.1| - 0.18 11.8 0.0 0.31 11.0 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|124028360|ref|YP_001013680.1| - 0.21 11.3 0.0 2 8.1 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|124028360|ref|YP_001013680.1| - 0.23 11.2 0.0 0.35 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|124028360|ref|YP_001013680.1| - 0.24 10.8 0.1 0.49 9.8 0.0 1.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Cytochrom_C_asm PF01578.20 gi|124028361|ref|YP_001013681.1| - 6.1e-22 78.4 17.9 6.1e-22 78.4 17.9 3.2 2 2 0 2 2 2 1 Cytochrome C assembly protein CcmF_C PF16327.5 gi|124028361|ref|YP_001013681.1| - 3.9e-07 29.7 17.8 1.5e-06 27.8 5.6 3.4 2 1 1 3 3 3 2 Cytochrome c-type biogenesis protein CcmF C-terminal MadL PF03817.13 gi|124028361|ref|YP_001013681.1| - 0.093 12.8 2.0 0.55 10.3 1.3 2.6 2 0 0 2 2 2 0 Malonate transporter MadL subunit Thioredoxin PF00085.20 gi|124028362|ref|YP_001013682.1| - 7.1e-10 38.8 0.0 1.3e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|124028362|ref|YP_001013682.1| - 1.2e-09 38.6 0.0 2.9e-09 37.4 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain DsbD PF02683.15 gi|124028362|ref|YP_001013682.1| - 0.0023 17.9 27.9 0.0025 17.7 24.3 2.4 2 1 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.6 gi|124028362|ref|YP_001013682.1| - 0.011 15.8 0.0 0.064 13.3 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin domain DsbD_2 PF13386.6 gi|124028362|ref|YP_001013682.1| - 0.015 15.2 25.2 0.11 12.5 7.7 2.4 2 0 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region Cytochrome_CBB3 PF13442.6 gi|124028362|ref|YP_001013682.1| - 0.02 15.2 0.0 0.04 14.2 0.0 1.5 1 0 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III Thioredoxin_4 PF13462.6 gi|124028362|ref|YP_001013682.1| - 0.042 14.0 0.5 5.4 7.1 0.3 2.3 1 1 1 2 2 2 0 Thioredoxin Thioredoxin_9 PF14595.6 gi|124028362|ref|YP_001013682.1| - 0.043 13.6 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin HTH_10 PF04967.12 gi|124028363|ref|YP_001013683.1| - 8.2e-19 67.2 0.4 1.4e-18 66.5 0.4 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|124028363|ref|YP_001013683.1| - 0.0045 16.5 0.1 0.0081 15.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|124028363|ref|YP_001013683.1| - 0.015 15.3 0.1 0.047 13.8 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix GntR PF00392.21 gi|124028363|ref|YP_001013683.1| - 0.061 13.0 0.3 0.16 11.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|124028363|ref|YP_001013683.1| - 0.16 12.0 0.1 0.31 11.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain CBS PF00571.28 gi|124028364|ref|YP_001013684.1| - 9.2e-14 51.6 1.7 8.7e-06 26.1 0.0 2.6 2 1 1 3 3 3 2 CBS domain CRISPR_Cas6 PF10040.9 gi|124028365|ref|YP_001013685.1| - 2e-05 25.1 0.2 6.2e-05 23.6 0.0 1.9 2 1 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 Importin_rep_6 PF18829.1 gi|124028366|ref|YP_001013686.1| - 0.18 11.9 0.0 0.64 10.2 0.1 1.8 2 0 0 2 2 2 0 Importin repeat 6 MoaE PF02391.17 gi|124028367|ref|YP_001013687.1| - 4.2e-23 81.8 0.1 5.7e-23 81.3 0.1 1.2 1 0 0 1 1 1 1 MoaE protein SfsA PF03749.13 gi|124028369|ref|YP_001013689.1| - 6.5e-24 84.4 0.0 8.2e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|124028369|ref|YP_001013689.1| - 6.3e-15 55.1 0.0 1.1e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 SfsA N-terminal OB domain Pantoate_transf PF02548.15 gi|124028370|ref|YP_001013690.1| - 2.5e-108 361.4 0.5 2.8e-108 361.2 0.5 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|124028370|ref|YP_001013690.1| - 2.8e-09 36.8 5.0 1.4e-08 34.5 4.7 2.1 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase Poly_export PF02563.16 gi|124028370|ref|YP_001013690.1| - 0.073 13.3 0.1 1.3 9.3 0.0 2.7 2 1 1 3 3 3 0 Polysaccharide biosynthesis/export protein Peptidase_U32 PF01136.19 gi|124028370|ref|YP_001013690.1| - 0.1 11.7 0.2 6 5.9 0.0 2.4 1 1 1 2 2 2 0 Peptidase family U32 ApbA_C PF08546.11 gi|124028371|ref|YP_001013691.1| - 1.4e-29 102.8 0.0 2e-29 102.3 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|124028371|ref|YP_001013691.1| - 2.2e-19 69.6 0.4 2.6e-18 66.1 0.4 2.1 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|124028371|ref|YP_001013691.1| - 0.00075 18.9 1.6 0.0012 18.3 1.6 1.2 1 0 0 1 1 1 1 ThiF family FAD_binding_3 PF01494.19 gi|124028371|ref|YP_001013691.1| - 0.0031 16.8 2.4 0.0046 16.3 2.4 1.2 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.17 gi|124028371|ref|YP_001013691.1| - 0.0058 17.2 0.5 0.1 13.2 0.5 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.24 gi|124028371|ref|YP_001013691.1| - 0.0058 16.3 5.3 0.0058 16.3 5.3 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|124028371|ref|YP_001013691.1| - 0.0061 15.8 0.4 0.01 15.1 0.4 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|124028371|ref|YP_001013691.1| - 0.02 14.0 2.3 0.027 13.6 2.3 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|124028371|ref|YP_001013691.1| - 0.024 14.0 0.2 0.043 13.2 0.2 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|124028371|ref|YP_001013691.1| - 0.027 15.0 1.6 0.059 13.9 1.6 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|124028371|ref|YP_001013691.1| - 0.028 13.7 0.9 0.042 13.1 0.9 1.2 1 0 0 1 1 1 0 Thi4 family FAD_binding_2 PF00890.24 gi|124028371|ref|YP_001013691.1| - 0.043 12.9 4.5 0.068 12.2 4.5 1.2 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|124028371|ref|YP_001013691.1| - 0.057 13.3 3.1 0.097 12.5 3.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|124028371|ref|YP_001013691.1| - 0.098 11.7 1.2 0.15 11.1 1.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Sacchrp_dh_NADP PF03435.18 gi|124028371|ref|YP_001013691.1| - 0.15 12.3 1.0 0.35 11.1 1.0 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_8 PF13450.6 gi|124028371|ref|YP_001013691.1| - 0.45 10.8 2.8 1.3 9.3 2.8 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|124028371|ref|YP_001013691.1| - 0.67 9.5 2.1 1.3 8.6 2.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_oxidored PF12831.7 gi|124028371|ref|YP_001013691.1| - 2.4 7.4 7.5 3.6 6.8 7.5 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase MarR_2 PF12802.7 gi|124028373|ref|YP_001013693.1| - 1.6e-08 34.3 1.3 2.5e-08 33.7 0.2 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|124028373|ref|YP_001013693.1| - 2e-06 27.7 1.1 3.2e-06 27.0 0.4 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|124028373|ref|YP_001013693.1| - 2e-06 27.6 0.6 8.9e-06 25.5 0.1 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|124028373|ref|YP_001013693.1| - 4.2e-05 23.6 0.1 0.00012 22.2 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|124028373|ref|YP_001013693.1| - 4.3e-05 23.5 1.6 5.2e-05 23.3 0.1 1.8 2 1 0 2 2 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|124028373|ref|YP_001013693.1| - 0.00017 22.0 0.3 0.00041 20.8 0.3 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|124028373|ref|YP_001013693.1| - 0.00069 19.9 0.1 0.0016 18.8 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator DUF505 PF04458.12 gi|124028373|ref|YP_001013693.1| - 0.00097 17.6 0.2 0.0014 17.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF4423 PF14394.6 gi|124028373|ref|YP_001013693.1| - 0.0013 18.5 0.2 0.0019 17.9 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_Tnp_ISL3 PF13542.6 gi|124028373|ref|YP_001013693.1| - 0.0015 17.9 0.2 0.0029 17.0 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|124028373|ref|YP_001013693.1| - 0.0028 17.4 0.0 0.008 15.9 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|124028373|ref|YP_001013693.1| - 0.0037 17.2 0.0 0.0081 16.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|124028373|ref|YP_001013693.1| - 0.0044 16.5 0.1 0.0099 15.4 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_36 PF13730.6 gi|124028373|ref|YP_001013693.1| - 0.015 15.3 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|124028373|ref|YP_001013693.1| - 0.017 14.7 0.1 0.029 13.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family RuvB_C PF05491.13 gi|124028373|ref|YP_001013693.1| - 0.024 14.5 0.2 0.064 13.1 0.2 1.9 1 1 0 1 1 1 0 RuvB C-terminal winged helix domain Fe_dep_repress PF01325.19 gi|124028373|ref|YP_001013693.1| - 0.035 14.3 0.0 0.086 13.1 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_17 PF12728.7 gi|124028373|ref|YP_001013693.1| - 0.063 13.5 0.7 2 8.6 0.2 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain YtxH PF12732.7 gi|124028373|ref|YP_001013693.1| - 0.064 13.8 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 YtxH-like protein Sigma70_r4_2 PF08281.12 gi|124028373|ref|YP_001013693.1| - 0.076 12.7 0.4 2 8.2 0.2 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|124028373|ref|YP_001013693.1| - 0.087 12.8 0.1 0.16 11.9 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.6 gi|124028373|ref|YP_001013693.1| - 0.11 12.1 0.4 0.18 11.4 0.4 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Soyouz_module PF14313.6 gi|124028373|ref|YP_001013693.1| - 0.18 11.6 0.0 0.4 10.5 0.0 1.6 1 0 0 1 1 1 0 N-terminal region of Paramyxovirinae phosphoprotein (P) ACP_syn_III_C PF08541.10 gi|124028374|ref|YP_001013694.1| - 4e-12 46.1 0.0 5e-11 42.6 0.0 2.5 2 1 1 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|124028374|ref|YP_001013694.1| - 4e-05 23.4 0.0 0.0067 16.1 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|124028374|ref|YP_001013694.1| - 0.00023 21.1 0.0 0.00031 20.7 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.23 gi|124028374|ref|YP_001013694.1| - 0.00035 20.0 0.1 0.00083 18.8 0.1 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|124028374|ref|YP_001013694.1| - 0.00057 19.7 2.5 0.00064 19.5 0.9 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|124028375|ref|YP_001013695.1| - 3.8e-24 85.5 0.0 5.8e-24 84.9 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|124028375|ref|YP_001013695.1| - 3.7e-10 39.5 0.1 3.7e-10 39.5 0.1 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|124028375|ref|YP_001013695.1| - 8e-06 25.6 0.3 0.0035 17.2 0.1 2.5 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|124028375|ref|YP_001013695.1| - 5.6e-05 23.2 0.7 0.018 15.1 0.1 3.2 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|124028375|ref|YP_001013695.1| - 0.00011 21.8 4.1 0.00091 18.9 1.1 2.7 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain OB_aCoA_assoc PF01796.17 gi|124028376|ref|YP_001013696.1| - 7.6e-21 73.9 2.3 1.1e-20 73.4 2.3 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|124028376|ref|YP_001013696.1| - 3.3e-14 52.4 6.3 4.9e-14 51.9 6.3 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TLP1_add_C PF18313.1 gi|124028376|ref|YP_001013696.1| - 0.00013 21.8 0.1 0.00019 21.3 0.1 1.2 1 0 0 1 1 1 1 Thiolase-like protein type 1 additional C-terminal domain TackOD1 PF18551.1 gi|124028376|ref|YP_001013696.1| - 0.0085 15.8 0.1 0.011 15.4 0.1 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zinc_ribbon_2 PF13240.6 gi|124028376|ref|YP_001013696.1| - 0.015 15.0 4.6 0.024 14.3 4.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|124028376|ref|YP_001013696.1| - 0.021 14.9 7.2 0.079 13.1 7.2 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|124028376|ref|YP_001013696.1| - 0.071 13.1 1.3 0.071 13.1 1.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Gmx_para_CXXCG PF09535.10 gi|124028376|ref|YP_001013696.1| - 0.081 12.2 0.3 0.25 10.6 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (Gmx_para_CXXCG) HypA PF01155.19 gi|124028376|ref|YP_001013696.1| - 0.084 12.9 0.3 0.14 12.2 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|124028376|ref|YP_001013696.1| - 0.36 10.4 2.0 2.6 7.6 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|124028376|ref|YP_001013696.1| - 0.37 10.5 2.4 0.59 9.9 0.1 2.4 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubrerythrin PF02915.17 gi|124028377|ref|YP_001013697.1| - 2.3e-10 41.0 0.8 2.8e-10 40.7 0.8 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|124028377|ref|YP_001013697.1| - 5e-05 23.6 0.2 6.3e-05 23.3 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|124028377|ref|YP_001013697.1| - 0.0001 22.3 0.2 0.00016 21.6 0.2 1.4 1 1 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.13 gi|124028377|ref|YP_001013697.1| - 0.0041 16.9 0.2 0.0056 16.5 0.1 1.3 1 1 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Mn_catalase PF05067.12 gi|124028377|ref|YP_001013697.1| - 0.0074 15.3 0.1 0.0074 15.3 0.1 1.0 1 0 0 1 1 1 1 Manganese containing catalase RHH_4 PF13467.6 gi|124028377|ref|YP_001013697.1| - 0.021 14.7 0.1 0.69 9.8 0.1 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix domain DUF2202 PF09968.9 gi|124028377|ref|YP_001013697.1| - 0.024 14.5 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) Cob_adeno_trans PF01923.18 gi|124028377|ref|YP_001013697.1| - 0.092 12.9 0.3 0.11 12.6 0.3 1.1 1 0 0 1 1 1 0 Cobalamin adenosyltransferase HMG-CoA_red PF00368.18 gi|124028378|ref|YP_001013698.1| - 1.7e-133 445.2 0.2 2e-133 445.0 0.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase MazE_antitoxin PF04014.18 gi|124028380|ref|YP_001013700.1| - 1.4e-07 31.3 2.2 2.5e-07 30.5 2.2 1.5 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|124028380|ref|YP_001013700.1| - 0.0037 17.2 0.7 0.0076 16.2 0.1 1.7 2 0 0 2 2 2 1 MraZ protein, putative antitoxin-like ABC_tran PF00005.27 gi|124028382|ref|YP_001013702.1| - 2e-31 109.4 0.0 2.9e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|124028382|ref|YP_001013702.1| - 2.6e-23 82.3 0.6 4.4e-23 81.6 0.6 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|124028382|ref|YP_001013702.1| - 6.3e-06 25.8 0.3 0.00011 21.7 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|124028382|ref|YP_001013702.1| - 3e-05 24.0 0.2 0.00023 21.1 0.1 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system TniB PF05621.11 gi|124028382|ref|YP_001013702.1| - 0.00016 21.2 0.1 0.0022 17.5 0.2 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_16 PF13191.6 gi|124028382|ref|YP_001013702.1| - 0.00092 19.6 0.0 0.002 18.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|124028382|ref|YP_001013702.1| - 0.0029 17.8 0.0 0.0052 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|124028382|ref|YP_001013702.1| - 0.0046 17.2 0.1 0.96 9.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|124028382|ref|YP_001013702.1| - 0.024 14.4 0.0 0.052 13.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.18 gi|124028382|ref|YP_001013702.1| - 0.035 13.9 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|124028382|ref|YP_001013702.1| - 0.042 13.8 0.0 0.091 12.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|124028382|ref|YP_001013702.1| - 0.046 14.2 0.0 1.6 9.2 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|124028382|ref|YP_001013702.1| - 0.056 13.3 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase NB-ARC PF00931.22 gi|124028382|ref|YP_001013702.1| - 0.092 11.9 0.1 0.4 9.8 0.0 2.0 3 0 0 3 3 3 0 NB-ARC domain AAA_25 PF13481.6 gi|124028382|ref|YP_001013702.1| - 0.11 12.1 0.0 0.33 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 gi|124028382|ref|YP_001013702.1| - 0.12 11.7 0.1 15 4.8 0.1 2.3 1 1 0 2 2 2 0 DnaB-like helicase C terminal domain RNA_helicase PF00910.22 gi|124028382|ref|YP_001013702.1| - 0.18 12.2 0.0 0.38 11.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Mannosyl_trans4 PF15971.5 gi|124028383|ref|YP_001013703.1| - 0.045 13.6 1.1 0.079 12.8 1.1 1.3 1 0 0 1 1 1 0 DolP-mannose mannosyltransferase DUF4227 PF14004.6 gi|124028383|ref|YP_001013703.1| - 0.12 12.4 0.6 0.25 11.4 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4227) CDP-OH_P_transf PF01066.21 gi|124028384|ref|YP_001013704.1| - 3.8e-08 34.0 0.6 3.8e-08 34.0 0.6 2.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase BAGE PF08180.11 gi|124028384|ref|YP_001013704.1| - 0.039 14.1 2.1 0.039 14.1 2.1 2.2 2 0 0 2 2 2 0 B melanoma antigen family NurA PF09376.10 gi|124028385|ref|YP_001013705.1| - 5.7e-14 52.4 0.0 8.8e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 NurA domain ArgJ PF01960.18 gi|124028385|ref|YP_001013705.1| - 0.27 9.9 0.1 0.4 9.4 0.1 1.2 1 0 0 1 1 1 0 ArgJ family DUF87 PF01935.17 gi|124028386|ref|YP_001013706.1| - 1.6e-22 80.7 0.0 2.6e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|124028386|ref|YP_001013706.1| - 0.00032 19.7 0.0 0.027 13.4 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Molydop_binding PF01568.21 gi|124028386|ref|YP_001013706.1| - 0.2 11.7 0.0 0.72 9.9 0.0 1.9 2 0 0 2 2 2 0 Molydopterin dinucleotide binding domain Lactamase_B PF00753.27 gi|124028387|ref|YP_001013707.1| - 2.5e-10 40.7 0.3 3.9e-10 40.1 0.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|124028387|ref|YP_001013707.1| - 6.3e-06 26.5 0.0 1.3e-05 25.5 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|124028387|ref|YP_001013707.1| - 8.8e-06 25.4 0.0 1.4e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|124028387|ref|YP_001013707.1| - 0.036 13.5 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain DpaA_N PF16924.5 gi|124028387|ref|YP_001013707.1| - 0.067 13.3 0.0 0.19 11.9 0.0 1.8 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain PAPS_reduct PF01507.19 gi|124028388|ref|YP_001013708.1| - 6.3e-37 127.3 0.0 8.6e-37 126.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|124028388|ref|YP_001013708.1| - 3.9e-05 22.9 0.0 6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|124028388|ref|YP_001013708.1| - 0.00068 19.2 0.0 0.0018 17.8 0.0 1.7 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|124028388|ref|YP_001013708.1| - 0.0041 16.5 0.0 0.0057 16.0 0.0 1.1 1 0 0 1 1 1 1 Arginosuccinate synthase ATP_bind_3 PF01171.20 gi|124028388|ref|YP_001013708.1| - 0.006 16.3 0.0 0.0092 15.8 0.0 1.2 1 0 0 1 1 1 1 PP-loop family DUF5448 PF17526.2 gi|124028388|ref|YP_001013708.1| - 0.03 14.5 0.0 0.049 13.8 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5448) Asn_synthase PF00733.21 gi|124028388|ref|YP_001013708.1| - 0.068 12.8 0.0 0.14 11.8 0.0 1.6 2 0 0 2 2 2 0 Asparagine synthase tRNA_Me_trans PF03054.16 gi|124028388|ref|YP_001013708.1| - 0.28 9.9 0.0 0.48 9.2 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Leucyl-specific PF14795.6 gi|124028389|ref|YP_001013709.1| - 0.14 12.3 0.7 0.3 11.2 0.7 1.7 1 1 1 2 2 2 0 Leucine-tRNA synthetase-specific domain NurA PF09376.10 gi|124028390|ref|YP_001013710.1| - 8.4e-14 51.8 0.0 1.6e-13 50.9 0.0 1.5 1 1 0 1 1 1 1 NurA domain PBP PF01161.20 gi|124028391|ref|YP_001013711.1| - 2.2e-26 92.7 0.0 2.8e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Phage_integrase PF00589.22 gi|124028392|ref|YP_001013712.1| - 3.8e-31 108.2 0.0 9.5e-31 106.9 0.0 1.7 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|124028392|ref|YP_001013712.1| - 2e-09 37.6 0.6 5.1e-08 33.1 0.1 3.2 3 1 1 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|124028392|ref|YP_001013712.1| - 1.2e-08 35.3 0.0 7.1e-06 26.4 0.0 2.5 1 1 0 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_6 PF18644.1 gi|124028392|ref|YP_001013712.1| - 0.081 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Phage integrase SAM-like domain HTH_8 PF02954.19 gi|124028392|ref|YP_001013712.1| - 0.22 11.3 1.2 0.56 10.0 1.2 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_20 PF12840.7 gi|124028392|ref|YP_001013712.1| - 0.32 11.1 3.2 16 5.6 0.0 3.2 4 0 0 4 4 4 0 Helix-turn-helix domain AA_kinase PF00696.28 gi|124028393|ref|YP_001013713.1| - 1.8e-14 53.9 0.0 3.1e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family PIN_5 PF08745.11 gi|124028394|ref|YP_001013714.1| - 2e-72 243.0 0.1 2.3e-72 242.7 0.1 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease PIN_4 PF13638.6 gi|124028394|ref|YP_001013714.1| - 0.2 11.9 0.0 0.84 9.9 0.0 2.1 1 1 0 1 1 1 0 PIN domain FliP PF00813.20 gi|124028395|ref|YP_001013715.1| - 0.5 10.2 6.0 1.1 9.1 3.2 2.3 1 1 2 3 3 3 0 FliP family DUF4191 PF13829.6 gi|124028395|ref|YP_001013715.1| - 0.67 9.3 3.0 1.2 8.5 3.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Lig_C PF18330.1 gi|124028396|ref|YP_001013716.1| - 1.7e-22 79.8 0.9 2.9e-22 79.0 0.9 1.4 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|124028396|ref|YP_001013716.1| - 9.3e-17 61.8 0.0 1.5e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|124028396|ref|YP_001013716.1| - 0.00065 19.4 0.1 0.0044 16.7 0.1 2.4 2 1 0 2 2 2 1 ATP dependent DNA ligase domain Oxidored_nitro PF00148.19 gi|124028396|ref|YP_001013716.1| - 0.031 13.0 0.1 0.05 12.3 0.1 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase YbjQ_1 PF01906.17 gi|124028397|ref|YP_001013717.1| - 2.4e-09 37.8 0.2 8e-08 32.9 0.1 2.0 1 1 1 2 2 2 1 Putative heavy-metal-binding FeoA PF04023.14 gi|124028397|ref|YP_001013717.1| - 0.0097 16.1 0.2 0.02 15.1 0.2 1.6 1 1 0 1 1 1 1 FeoA domain DUF4258 PF14076.6 gi|124028398|ref|YP_001013718.1| - 3.8e-10 40.0 0.4 6.1e-10 39.3 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) AFOR_C PF01314.18 gi|124028399|ref|YP_001013719.1| - 1.3e-91 307.5 0.0 1.9e-91 307.0 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|124028399|ref|YP_001013719.1| - 1.5e-67 227.3 0.2 2.4e-67 226.7 0.2 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain YdjM PF04307.14 gi|124028400|ref|YP_001013720.1| - 6e-18 64.7 10.4 1.1e-16 60.7 10.4 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase adh_short_C2 PF13561.6 gi|124028401|ref|YP_001013721.1| - 1.1e-68 231.3 0.3 1.4e-68 231.0 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|124028401|ref|YP_001013721.1| - 1.9e-58 197.1 0.1 2.3e-58 196.9 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|124028401|ref|YP_001013721.1| - 5.3e-15 55.8 0.1 1.1e-14 54.7 0.1 1.5 1 1 1 2 2 2 1 KR domain Epimerase PF01370.21 gi|124028401|ref|YP_001013721.1| - 0.00031 20.3 0.2 0.0058 16.1 0.2 2.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 gi|124028401|ref|YP_001013721.1| - 0.00061 19.2 0.0 0.0042 16.5 0.0 1.9 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) Glyco_hydro_1 PF00232.18 gi|124028401|ref|YP_001013721.1| - 0.26 9.7 0.0 0.34 9.3 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 1 FKBP_C PF00254.28 gi|124028403|ref|YP_001013723.1| - 3e-12 46.7 0.0 1e-11 45.0 0.0 2.0 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|124028403|ref|YP_001013723.1| - 0.00038 20.5 0.3 0.00083 19.4 0.3 1.6 1 0 0 1 1 1 1 FKBP26_C-terminal UPF0113 PF03657.13 gi|124028404|ref|YP_001013724.1| - 1.2e-23 83.2 0.2 1.8e-23 82.5 0.2 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain Methyltr_RsmB-F PF01189.17 gi|124028405|ref|YP_001013725.1| - 5.2e-44 150.3 0.0 7.3e-44 149.8 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|124028405|ref|YP_001013725.1| - 1.5e-08 35.0 0.0 3e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF MTS PF05175.14 gi|124028405|ref|YP_001013725.1| - 2.3e-08 33.8 0.1 6.3e-08 32.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|124028405|ref|YP_001013725.1| - 7.5e-08 32.3 0.0 1.4e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|124028405|ref|YP_001013725.1| - 5.9e-07 30.1 0.0 1.2e-06 29.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|124028405|ref|YP_001013725.1| - 2e-05 24.4 0.0 3.5e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|124028405|ref|YP_001013725.1| - 2.4e-05 23.9 0.0 0.00015 21.3 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase GidB PF02527.15 gi|124028405|ref|YP_001013725.1| - 0.00077 18.8 0.0 0.0015 17.9 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_15 PF09445.10 gi|124028405|ref|YP_001013725.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|124028405|ref|YP_001013725.1| - 0.016 14.9 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.18 gi|124028405|ref|YP_001013725.1| - 0.049 13.0 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|124028405|ref|YP_001013725.1| - 0.055 14.2 0.0 0.13 13.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain CTP_transf_like PF01467.26 gi|124028406|ref|YP_001013726.1| - 8.9e-19 68.1 0.0 1.5e-18 67.3 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase-like RTC PF01137.21 gi|124028407|ref|YP_001013727.1| - 1.5e-77 259.7 0.0 1.9e-77 259.4 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|124028407|ref|YP_001013727.1| - 8.4e-26 90.5 0.1 1.5e-25 89.7 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain MMR_HSR1 PF01926.23 gi|124028408|ref|YP_001013728.1| - 2.4e-17 63.0 0.0 6.5e-17 61.7 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|124028408|ref|YP_001013728.1| - 8e-16 57.6 0.0 2.4e-15 56.0 0.0 1.9 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) NOG1_N PF17835.1 gi|124028408|ref|YP_001013728.1| - 9.6e-13 48.4 2.0 2e-12 47.4 0.8 2.1 2 1 0 2 2 2 1 NOG1 N-terminal helical domain FeoB_N PF02421.18 gi|124028408|ref|YP_001013728.1| - 1.6e-09 37.5 0.0 5e-09 35.9 0.0 1.9 2 1 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|124028408|ref|YP_001013728.1| - 6.9e-08 32.3 0.0 6.7e-06 25.8 0.0 2.6 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|124028408|ref|YP_001013728.1| - 2.8e-06 26.5 0.2 0.011 14.7 0.0 2.3 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB SRPRB PF09439.10 gi|124028408|ref|YP_001013728.1| - 0.0013 18.2 0.0 0.0023 17.4 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.17 gi|124028408|ref|YP_001013728.1| - 0.0051 16.6 0.0 2.5 7.8 0.0 2.5 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|124028408|ref|YP_001013728.1| - 0.0053 17.1 0.2 0.016 15.6 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|124028408|ref|YP_001013728.1| - 0.017 15.1 0.9 2.6 7.9 0.1 3.0 1 1 1 2 2 2 0 RsgA GTPase AAA_28 PF13521.6 gi|124028408|ref|YP_001013728.1| - 0.02 15.1 0.0 0.086 13.1 0.0 2.1 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|124028408|ref|YP_001013728.1| - 0.031 14.8 0.0 0.19 12.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain Arf PF00025.21 gi|124028408|ref|YP_001013728.1| - 0.033 13.6 0.0 0.43 10.0 0.0 2.2 1 1 0 1 1 1 0 ADP-ribosylation factor family KTI12 PF08433.10 gi|124028408|ref|YP_001013728.1| - 0.05 13.0 0.4 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|124028408|ref|YP_001013728.1| - 0.059 13.5 0.2 0.14 12.3 0.0 1.8 2 1 0 2 2 1 0 AAA domain DUF5113 PF17140.4 gi|124028408|ref|YP_001013728.1| - 0.094 12.5 0.0 0.67 9.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5113) SEN1_N PF12726.7 gi|124028408|ref|YP_001013728.1| - 0.099 10.8 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 SEN1 N terminal CPT PF07931.12 gi|124028408|ref|YP_001013728.1| - 0.11 12.3 0.0 3.8 7.3 0.0 2.3 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein MMR_HSR1_Xtn PF16897.5 gi|124028408|ref|YP_001013728.1| - 0.12 12.3 0.0 0.38 10.8 0.0 1.8 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain cobW PF02492.19 gi|124028408|ref|YP_001013728.1| - 0.18 11.4 0.2 2.7 7.6 0.0 2.3 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|124028408|ref|YP_001013728.1| - 0.2 11.7 0.3 5.9 6.9 0.1 2.4 1 1 1 2 2 2 0 Dynamin family Zeta_toxin PF06414.12 gi|124028408|ref|YP_001013728.1| - 0.55 9.5 4.0 4 6.6 0.0 2.6 1 1 1 2 2 2 0 Zeta toxin TF_Zn_Ribbon PF08271.12 gi|124028409|ref|YP_001013729.1| - 1.3e-11 43.8 0.2 2.8e-11 42.7 0.2 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|124028409|ref|YP_001013729.1| - 5.3e-05 22.7 1.7 0.00011 21.7 0.5 2.2 2 1 0 2 2 2 1 Sigma-70, region 4 A2L_zn_ribbon PF08792.10 gi|124028409|ref|YP_001013729.1| - 0.00061 19.4 0.1 0.00099 18.8 0.1 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|124028409|ref|YP_001013729.1| - 0.0011 18.9 0.5 0.0011 18.9 0.5 1.8 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|124028409|ref|YP_001013729.1| - 0.0014 19.0 0.1 0.0026 18.1 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar Ribosomal_S27e PF01667.17 gi|124028409|ref|YP_001013729.1| - 0.0026 17.4 0.2 0.0053 16.4 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|124028409|ref|YP_001013729.1| - 0.0077 15.6 4.3 0.094 12.2 4.3 2.2 1 1 0 1 1 1 1 zinc-ribbon domain Desulfoferrod_N PF06397.12 gi|124028409|ref|YP_001013729.1| - 0.046 13.4 1.0 0.093 12.4 1.0 1.5 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-RRN7 PF11781.8 gi|124028409|ref|YP_001013729.1| - 0.048 13.4 0.3 0.093 12.4 0.3 1.5 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 OrfB_Zn_ribbon PF07282.11 gi|124028409|ref|YP_001013729.1| - 0.1 12.6 0.1 0.26 11.2 0.1 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|124028409|ref|YP_001013729.1| - 0.11 12.5 0.3 0.23 11.5 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon Sigma70_r4_2 PF08281.12 gi|124028409|ref|YP_001013729.1| - 0.36 10.5 2.2 7.8 6.3 1.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 zinc_ribbon_2 PF13240.6 gi|124028409|ref|YP_001013729.1| - 0.39 10.5 2.2 7 6.5 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC5 PF06221.13 gi|124028409|ref|YP_001013729.1| - 0.82 9.7 3.1 4.2 7.4 0.1 2.9 2 1 1 3 3 3 0 Putative zinc finger motif, C2HC5-type zf-tcix PF14952.6 gi|124028409|ref|YP_001013729.1| - 2.7 7.7 6.8 9.9 5.9 0.1 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Proteasome PF00227.26 gi|124028410|ref|YP_001013730.1| - 2.4e-54 183.7 1.6 2.8e-54 183.5 1.6 1.0 1 0 0 1 1 1 1 Proteasome subunit Endonuclease_5 PF04493.14 gi|124028411|ref|YP_001013731.1| - 6.2e-47 159.8 0.0 7.5e-47 159.6 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V Fe-ADH_2 PF13685.6 gi|124028412|ref|YP_001013732.1| - 2.7e-66 223.8 0.1 3.3e-66 223.6 0.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|124028412|ref|YP_001013732.1| - 2.8e-24 85.6 0.5 6.8e-23 81.1 0.5 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|124028412|ref|YP_001013732.1| - 4.3e-11 42.5 0.2 9.2e-10 38.1 0.2 2.5 1 1 0 1 1 1 1 3-dehydroquinate synthase Proteasome PF00227.26 gi|124028413|ref|YP_001013733.1| - 2.3e-56 190.3 0.6 2.6e-56 190.1 0.6 1.0 1 0 0 1 1 1 1 Proteasome subunit KH_7 PF17214.3 gi|124028414|ref|YP_001013734.1| - 8.6e-23 80.1 11.4 2.7e-22 78.5 1.7 4.0 4 0 0 4 4 4 2 KH domain Beta-Casp PF10996.8 gi|124028414|ref|YP_001013734.1| - 2.1e-22 79.5 0.0 4.1e-22 78.5 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|124028414|ref|YP_001013734.1| - 6e-19 67.7 0.0 1.9e-18 66.1 0.0 2.0 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|124028414|ref|YP_001013734.1| - 7.7e-18 64.6 0.0 1.1e-16 60.8 0.0 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|124028414|ref|YP_001013734.1| - 4.3e-12 46.5 2.5 5.7e-11 42.8 2.5 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|124028414|ref|YP_001013734.1| - 7.4e-10 38.7 0.1 2e-09 37.3 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|124028414|ref|YP_001013734.1| - 0.0013 18.7 0.2 0.006 16.5 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain PUA PF01472.20 gi|124028415|ref|YP_001013735.1| - 4.9e-17 61.7 0.0 6.9e-17 61.2 0.0 1.2 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|124028415|ref|YP_001013735.1| - 1.4e-11 44.5 0.0 2.3e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|124028415|ref|YP_001013735.1| - 6.8e-05 23.5 0.0 0.0002 22.0 0.0 1.7 1 1 0 1 1 1 1 Pre-PUA-like domain LSM PF01423.22 gi|124028416|ref|YP_001013736.1| - 3.1e-23 81.2 0.2 3.4e-23 81.1 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|124028416|ref|YP_001013736.1| - 0.05 13.7 0.0 0.055 13.6 0.0 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain Ribosomal_L37e PF01907.19 gi|124028417|ref|YP_001013737.1| - 7.5e-24 83.7 9.0 8.4e-24 83.5 9.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e OrfB_Zn_ribbon PF07282.11 gi|124028417|ref|YP_001013737.1| - 0.0016 18.3 1.0 0.0021 17.9 1.0 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF2752 PF10825.8 gi|124028417|ref|YP_001013737.1| - 0.0022 18.0 1.2 0.75 9.9 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2752) DZR PF12773.7 gi|124028417|ref|YP_001013737.1| - 0.012 15.7 1.2 0.016 15.2 1.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|124028417|ref|YP_001013737.1| - 0.016 15.4 1.0 0.022 14.9 1.0 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like GcpE PF04551.14 gi|124028417|ref|YP_001013737.1| - 0.16 11.0 0.3 0.19 10.8 0.3 1.1 1 0 0 1 1 1 0 GcpE protein HypA PF01155.19 gi|124028417|ref|YP_001013737.1| - 0.28 11.2 1.3 0.82 9.7 0.3 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|124028417|ref|YP_001013737.1| - 0.34 10.9 7.6 1.4 9.0 7.6 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|124028417|ref|YP_001013737.1| - 0.43 10.1 0.2 0.43 10.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|124028417|ref|YP_001013737.1| - 1.5 8.6 8.2 2.1 8.2 0.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb5_C PF01191.19 gi|124028418|ref|YP_001013738.1| - 2.6e-31 107.3 0.0 3e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF515 PF04415.12 gi|124028418|ref|YP_001013738.1| - 0.19 10.1 0.1 0.24 9.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) RNA_pol_Rpb2_6 PF00562.28 gi|124028419|ref|YP_001013739.1| - 2.4e-133 445.0 0.0 3.3e-133 444.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|124028419|ref|YP_001013739.1| - 6e-47 159.8 0.0 9e-47 159.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|124028419|ref|YP_001013739.1| - 1.3e-30 106.4 0.1 2.3e-30 105.7 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|124028419|ref|YP_001013739.1| - 7.5e-30 103.2 0.1 1.7e-29 102.1 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|124028419|ref|YP_001013739.1| - 2.5e-29 101.2 0.0 3.6e-28 97.5 0.0 2.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|124028419|ref|YP_001013739.1| - 9.7e-24 83.4 0.2 2.8e-23 81.9 0.2 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|124028419|ref|YP_001013739.1| - 1.7e-11 44.5 0.1 4.3e-11 43.2 0.1 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 PapA_C PF16911.5 gi|124028419|ref|YP_001013739.1| - 0.074 13.1 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus RNA_pol_Rpb1_1 PF04997.12 gi|124028420|ref|YP_001013740.1| - 3e-98 329.0 0.0 4e-98 328.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|124028420|ref|YP_001013740.1| - 2.4e-75 252.3 0.0 4.2e-75 251.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|124028420|ref|YP_001013740.1| - 5.7e-39 133.6 0.0 9.2e-39 132.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|124028420|ref|YP_001013740.1| - 7.4e-30 103.1 0.0 1.5e-29 102.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|124028420|ref|YP_001013740.1| - 5.7e-26 91.5 0.0 1e-25 90.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Zn-ribbon_8 PF09723.10 gi|124028420|ref|YP_001013740.1| - 0.064 13.4 2.5 3.7 7.7 0.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain DZR PF12773.7 gi|124028420|ref|YP_001013740.1| - 0.09 12.8 0.9 2 8.5 0.9 2.2 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|124028420|ref|YP_001013740.1| - 0.31 11.3 6.1 7.4 6.9 0.0 3.2 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|124028420|ref|YP_001013740.1| - 3 7.4 7.1 5.2 6.6 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|124028420|ref|YP_001013740.1| - 3.2 7.6 6.4 8.1 6.3 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.17 gi|124028421|ref|YP_001013741.1| - 8.7e-57 192.6 0.1 1.4e-56 191.9 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 PASTA PF03793.19 gi|124028421|ref|YP_001013741.1| - 0.0087 15.9 0.2 4.5 7.2 0.1 2.6 2 0 0 2 2 2 2 PASTA domain Ribosomal_L7Ae PF01248.26 gi|124028422|ref|YP_001013742.1| - 7.7e-21 73.6 0.0 8.8e-21 73.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|124028423|ref|YP_001013743.1| - 2.3e-17 62.6 4.0 5.3e-13 48.6 0.3 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|124028423|ref|YP_001013743.1| - 7.5e-16 58.0 2.0 1.2e-14 54.2 0.2 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|124028423|ref|YP_001013743.1| - 4e-11 42.6 0.9 4.4e-05 23.3 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|124028423|ref|YP_001013743.1| - 1.6e-05 24.6 3.3 0.0025 17.6 0.3 2.5 2 1 0 2 2 2 2 KH domain Ribosom_S12_S23 PF00164.25 gi|124028424|ref|YP_001013744.1| - 2.6e-46 155.9 0.2 2.6e-46 155.9 0.2 1.4 2 0 0 2 2 2 1 Ribosomal protein S12/S23 DNase-RNase PF02577.14 gi|124028425|ref|YP_001013745.1| - 5.3e-08 32.6 0.1 7.6e-08 32.1 0.1 1.3 1 0 0 1 1 1 1 Bifunctional nuclease Ribosomal_S7 PF00177.21 gi|124028426|ref|YP_001013746.1| - 7e-44 149.1 0.3 8.7e-44 148.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.27 gi|124028427|ref|YP_001013747.1| - 2.7e-55 186.9 0.0 3.9e-55 186.4 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|124028427|ref|YP_001013747.1| - 4.2e-36 123.7 0.1 1.4e-35 121.9 0.1 1.9 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|124028427|ref|YP_001013747.1| - 1.4e-18 67.0 1.0 3.5e-18 65.7 1.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|124028427|ref|YP_001013747.1| - 4e-06 26.9 0.0 4.1e-05 23.6 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|124028427|ref|YP_001013747.1| - 9e-05 22.3 0.8 0.0003 20.6 0.8 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Amelogenin PF02948.15 gi|124028427|ref|YP_001013747.1| - 0.02 15.5 3.3 0.042 14.5 1.7 2.0 2 0 0 2 2 2 0 Amelogenin Septin PF00735.18 gi|124028427|ref|YP_001013747.1| - 0.024 13.9 0.1 0.094 12.0 0.1 1.9 2 1 0 2 2 2 0 Septin Dynamin_N PF00350.23 gi|124028427|ref|YP_001013747.1| - 0.025 14.7 0.1 2.8 8.0 0.0 2.7 2 1 1 3 3 3 0 Dynamin family SRPRB PF09439.10 gi|124028427|ref|YP_001013747.1| - 0.096 12.1 0.1 0.62 9.5 0.1 2.0 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|124028427|ref|YP_001013747.1| - 0.098 12.2 0.1 1.1 8.7 0.1 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B Ribosomal_S10 PF00338.22 gi|124028428|ref|YP_001013748.1| - 2.9e-27 94.8 0.1 3.2e-27 94.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e DUF43 PF01861.16 gi|124028428|ref|YP_001013748.1| - 0.11 11.7 1.1 0.18 11.0 1.1 1.3 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain ParBc PF02195.18 gi|124028429|ref|YP_001013749.1| - 3.6e-13 49.6 0.1 6.7e-13 48.7 0.1 1.4 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|124028429|ref|YP_001013749.1| - 0.0023 16.9 3.6 0.28 10.0 0.2 2.8 2 1 1 3 3 3 2 Protein of unknown function (DUF1015) PALP PF00291.25 gi|124028430|ref|YP_001013750.1| - 1.9e-47 162.1 0.0 3.3e-47 161.3 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TNFR_16_TM PF18422.1 gi|124028431|ref|YP_001013751.1| - 0.0024 17.8 1.2 0.0044 16.9 1.2 1.4 1 0 0 1 1 1 1 Tumor necrosis factor receptor member 16 trans-membrane domain BcrAD_BadFG PF01869.20 gi|124028432|ref|YP_001013752.1| - 3.8e-29 102.0 4.3 4.6e-29 101.7 4.3 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Coat_F PF07875.12 gi|124028433|ref|YP_001013753.1| - 0.0047 17.1 0.2 0.018 15.2 0.0 2.2 2 1 1 3 3 3 1 Coat F domain Rubrerythrin PF02915.17 gi|124028433|ref|YP_001013753.1| - 0.01 16.2 6.1 0.13 12.7 5.1 2.4 1 1 0 1 1 1 0 Rubrerythrin Aminotran_5 PF00266.19 gi|124028434|ref|YP_001013754.1| - 1e-36 126.7 0.0 1.4e-36 126.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|124028434|ref|YP_001013754.1| - 6.6e-09 35.5 0.0 1.6e-08 34.2 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|124028434|ref|YP_001013754.1| - 0.005 16.2 0.2 0.0085 15.4 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|124028434|ref|YP_001013754.1| - 0.049 12.2 0.0 0.082 11.4 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DUF2953 PF11167.8 gi|124028435|ref|YP_001013755.1| - 0.27 11.3 1.1 2.8 8.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) MrpF_PhaF PF04066.13 gi|124028435|ref|YP_001013755.1| - 2.9 8.4 11.9 0.95 9.9 7.9 2.2 2 1 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) EMG1 PF03587.14 gi|124028436|ref|YP_001013756.1| - 8.6e-45 152.8 0.0 1e-44 152.5 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Rpr2 PF04032.16 gi|124028437|ref|YP_001013757.1| - 1.4e-10 41.3 0.0 1.9e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1771 PF08590.10 gi|124028437|ref|YP_001013757.1| - 0.017 15.5 0.5 0.025 14.9 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) TPR_4 PF07721.14 gi|124028437|ref|YP_001013757.1| - 0.019 15.6 1.5 0.066 13.9 1.5 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat Phage_mat-A PF03863.13 gi|124028437|ref|YP_001013757.1| - 0.067 12.1 0.2 0.072 12.0 0.2 1.1 1 0 0 1 1 1 0 Phage maturation protein PTS_IIA PF02255.16 gi|124028437|ref|YP_001013757.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIA subunit Nudix_N_2 PF14803.6 gi|124028437|ref|YP_001013757.1| - 8.7 6.4 10.6 7.5 6.6 6.1 2.6 2 1 1 3 3 3 0 Nudix N-terminal CRS1_YhbY PF01985.21 gi|124028438|ref|YP_001013758.1| - 3.1e-14 52.9 1.6 4.6e-14 52.3 1.6 1.2 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_L10 PF00466.20 gi|124028438|ref|YP_001013758.1| - 0.062 13.4 0.4 0.081 13.1 0.4 1.2 1 0 0 1 1 1 0 Ribosomal protein L10 Ribosomal_S19e PF01090.19 gi|124028439|ref|YP_001013759.1| - 6e-58 194.4 0.0 6.8e-58 194.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|124028439|ref|YP_001013759.1| - 0.00033 20.5 1.3 0.018 15.0 0.1 2.7 4 0 0 4 4 4 1 Ribonuclease R winged-helix domain Rrf2 PF02082.20 gi|124028439|ref|YP_001013759.1| - 0.002 18.4 0.2 0.0054 17.1 0.2 1.7 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|124028439|ref|YP_001013759.1| - 0.011 15.4 2.4 0.049 13.3 0.5 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|124028439|ref|YP_001013759.1| - 0.02 14.8 0.9 0.34 10.8 0.1 2.7 2 1 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB dsDNA_bind PF01984.20 gi|124028440|ref|YP_001013760.1| - 4.6e-24 84.8 12.7 5.6e-24 84.5 12.7 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|124028440|ref|YP_001013760.1| - 0.00019 20.8 8.1 0.00022 20.6 8.1 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 CCDC73 PF15818.5 gi|124028440|ref|YP_001013760.1| - 0.053 11.4 1.4 0.062 11.1 1.4 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 73 family Ribosomal_L39 PF00832.20 gi|124028441|ref|YP_001013761.1| - 6.5e-23 80.1 13.1 7.4e-23 79.9 13.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein REV PF00424.18 gi|124028441|ref|YP_001013761.1| - 0.099 12.7 2.4 0.11 12.6 2.4 1.0 1 0 0 1 1 1 0 REV protein (anti-repression trans-activator protein) Ribosomal_L31e PF01198.19 gi|124028442|ref|YP_001013762.1| - 1.8e-13 50.5 0.2 2.5e-13 50.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|124028443|ref|YP_001013763.1| - 1.4e-68 230.2 3.2 1.8e-68 229.8 3.2 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|124028444|ref|YP_001013764.1| - 1.7e-12 47.5 0.1 2.6e-12 46.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|124028445|ref|YP_001013765.1| - 5.3e-18 65.1 0.8 7.6e-18 64.6 0.8 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|124028445|ref|YP_001013765.1| - 3.3e-08 33.5 1.0 0.001 19.0 0.0 2.3 2 0 0 2 2 2 2 Prefoldin subunit Baculo_PEP_C PF04513.12 gi|124028445|ref|YP_001013765.1| - 0.0011 19.0 1.1 0.0048 16.9 0.8 1.9 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|124028445|ref|YP_001013765.1| - 0.0035 17.6 2.4 0.064 13.6 0.9 2.3 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 LXG PF04740.12 gi|124028445|ref|YP_001013765.1| - 0.03 14.0 1.2 1.9 8.1 0.6 2.1 2 0 0 2 2 2 0 LXG domain of WXG superfamily DUF4407 PF14362.6 gi|124028445|ref|YP_001013765.1| - 0.11 11.9 4.9 1.9 7.8 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) ZapB PF06005.12 gi|124028445|ref|YP_001013765.1| - 0.14 12.6 7.9 0.58 10.6 5.1 2.2 1 1 1 2 2 2 0 Cell division protein ZapB Nsp1_C PF05064.13 gi|124028445|ref|YP_001013765.1| - 0.15 11.9 3.7 5.7 6.8 0.0 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region APG6_N PF17675.1 gi|124028445|ref|YP_001013765.1| - 0.16 12.5 9.8 1.4 9.5 3.4 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region CotJB PF12652.7 gi|124028445|ref|YP_001013765.1| - 0.16 12.2 0.2 0.59 10.4 0.1 1.9 2 0 0 2 2 2 0 CotJB protein HXXSHH PF07586.11 gi|124028445|ref|YP_001013765.1| - 0.27 10.8 3.5 2.7 7.5 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1552) DASH_Hsk3 PF08227.11 gi|124028445|ref|YP_001013765.1| - 0.34 11.3 6.8 0.78 10.2 1.7 2.6 2 0 0 2 2 2 0 DASH complex subunit Hsk3 like DivIC PF04977.15 gi|124028445|ref|YP_001013765.1| - 0.37 10.6 8.7 0.2 11.5 2.0 2.3 2 0 0 2 2 2 0 Septum formation initiator YabA PF06156.13 gi|124028445|ref|YP_001013765.1| - 0.46 11.2 2.1 4.4 8.0 0.3 2.1 2 0 0 2 2 2 0 Initiation control protein YabA CENP-Q PF13094.6 gi|124028445|ref|YP_001013765.1| - 0.46 10.7 6.8 2.3 8.4 0.8 2.2 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2203 PF09969.9 gi|124028445|ref|YP_001013765.1| - 0.46 11.2 3.9 2.5 8.8 3.9 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) SlyX PF04102.12 gi|124028445|ref|YP_001013765.1| - 0.46 11.1 7.3 5.4 7.7 2.2 2.4 2 0 0 2 2 2 0 SlyX DUF5320 PF17253.2 gi|124028445|ref|YP_001013765.1| - 0.76 10.9 2.2 52 5.0 1.1 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Toprim_C_rpt PF13368.6 gi|124028445|ref|YP_001013765.1| - 1.7 8.7 3.7 3.4 7.7 0.1 2.8 3 0 0 3 3 3 0 Topoisomerase C-terminal repeat ATG16 PF08614.11 gi|124028445|ref|YP_001013765.1| - 1.9 8.7 11.2 1.3 9.2 1.2 2.2 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) SRP54 PF00448.22 gi|124028446|ref|YP_001013766.1| - 3.7e-72 242.1 0.0 4.7e-72 241.7 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|124028446|ref|YP_001013766.1| - 1.7e-08 34.5 3.4 1.7e-08 34.5 3.4 2.0 3 0 0 3 3 1 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.6 gi|124028446|ref|YP_001013766.1| - 0.00067 19.9 0.0 0.0022 18.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|124028446|ref|YP_001013766.1| - 0.00099 18.9 1.1 0.017 14.8 0.3 2.3 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|124028446|ref|YP_001013766.1| - 0.0014 19.0 0.3 0.0071 16.8 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain MeaB PF03308.16 gi|124028446|ref|YP_001013766.1| - 0.0015 17.6 0.3 0.0051 15.8 0.0 2.1 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|124028446|ref|YP_001013766.1| - 0.0037 17.0 0.1 0.02 14.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|124028446|ref|YP_001013766.1| - 0.0045 17.1 0.4 0.58 10.2 0.0 3.0 3 1 0 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|124028446|ref|YP_001013766.1| - 0.0092 15.3 0.0 0.019 14.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 gi|124028446|ref|YP_001013766.1| - 0.011 15.9 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|124028446|ref|YP_001013766.1| - 0.012 15.7 0.3 0.1 12.7 0.3 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|124028446|ref|YP_001013766.1| - 0.013 15.8 0.2 0.039 14.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|124028446|ref|YP_001013766.1| - 0.02 14.6 0.1 0.073 12.7 0.0 2.0 2 1 1 3 3 3 0 Thymidylate kinase AAA_19 PF13245.6 gi|124028446|ref|YP_001013766.1| - 0.021 15.1 0.0 0.037 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|124028446|ref|YP_001013766.1| - 0.036 14.5 0.1 0.15 12.5 0.0 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KdpD PF02702.17 gi|124028446|ref|YP_001013766.1| - 0.047 13.2 0.0 0.15 11.5 0.0 1.8 1 1 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain DUF4127 PF13552.6 gi|124028446|ref|YP_001013766.1| - 0.047 12.3 0.0 0.067 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) ATPase PF06745.13 gi|124028446|ref|YP_001013766.1| - 0.056 12.8 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 KaiC Ploopntkinase3 PF18751.1 gi|124028446|ref|YP_001013766.1| - 0.073 13.0 0.1 2.2 8.2 0.1 2.6 2 1 0 2 2 2 0 P-loop Nucleotide Kinase3 AAA_7 PF12775.7 gi|124028446|ref|YP_001013766.1| - 0.18 11.3 0.0 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region TrwB_AAD_bind PF10412.9 gi|124028446|ref|YP_001013766.1| - 0.19 10.6 0.0 16 4.2 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain SecE PF00584.20 gi|124028447|ref|YP_001013767.1| - 3.2e-06 27.0 0.1 4.1e-06 26.6 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex FixQ PF05545.11 gi|124028447|ref|YP_001013767.1| - 0.083 12.9 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ Spt5-NGN PF03439.13 gi|124028448|ref|YP_001013768.1| - 6.3e-19 67.7 0.1 1.4e-18 66.5 0.0 1.6 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|124028448|ref|YP_001013768.1| - 9.6e-09 34.9 0.4 2.3e-08 33.7 0.1 1.8 2 0 0 2 2 2 1 KOW motif DUF4978 PF16349.5 gi|124028448|ref|YP_001013768.1| - 0.033 13.8 0.0 0.046 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4978) Ribosomal_L11 PF00298.19 gi|124028449|ref|YP_001013769.1| - 4.4e-20 72.0 0.3 8.9e-20 71.0 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|124028449|ref|YP_001013769.1| - 5.2e-19 67.8 0.8 9.8e-19 67.0 0.3 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Clp_N PF02861.20 gi|124028449|ref|YP_001013769.1| - 0.017 15.3 2.0 1.9 8.7 0.0 3.6 4 0 0 4 4 4 0 Clp amino terminal domain, pathogenicity island component Flavi_glycop_C PF02832.16 gi|124028449|ref|YP_001013769.1| - 0.072 13.2 0.5 0.17 12.0 0.1 1.9 2 1 0 2 2 2 0 Flavivirus glycoprotein, immunoglobulin-like domain Ribosomal_L1 PF00687.21 gi|124028450|ref|YP_001013770.1| - 1.5e-37 129.3 0.1 1.8e-37 129.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family tRNA-synt_2c PF01411.19 gi|124028451|ref|YP_001013771.1| - 3.9e-113 378.9 0.0 5.3e-113 378.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|124028451|ref|YP_001013771.1| - 1.2e-14 54.1 0.1 3.2e-14 52.7 0.1 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|124028451|ref|YP_001013771.1| - 2e-10 41.2 2.2 7.5e-10 39.4 1.2 2.2 2 0 0 2 2 2 1 DHHA1 domain tRNA-synt_2e PF02091.15 gi|124028451|ref|YP_001013771.1| - 0.0045 16.3 0.2 0.0084 15.4 0.2 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit DUF5616 PF18481.1 gi|124028452|ref|YP_001013772.1| - 1.3e-27 96.9 0.0 1.5e-27 96.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) Fer4_8 PF13183.6 gi|124028453|ref|YP_001013773.1| - 3e-08 34.0 1.2 5.6e-08 33.1 1.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|124028453|ref|YP_001013773.1| - 1.9e-06 28.3 2.8 2.1e-06 28.2 1.9 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|124028453|ref|YP_001013773.1| - 0.00019 21.9 2.0 0.00035 21.1 2.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|124028453|ref|YP_001013773.1| - 0.0073 16.5 4.9 0.012 15.8 3.4 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|124028453|ref|YP_001013773.1| - 0.035 14.3 2.3 0.96 9.6 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|124028453|ref|YP_001013773.1| - 0.16 12.5 1.4 0.16 12.5 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|124028453|ref|YP_001013773.1| - 0.21 11.8 6.0 1.5 9.1 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|124028453|ref|YP_001013773.1| - 0.27 11.1 4.3 0.3 11.0 1.8 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.16 gi|124028454|ref|YP_001013774.1| - 1.7e-06 28.2 0.7 4e-06 27.0 0.3 1.7 2 0 0 2 2 2 1 Cysteine-rich domain Tautomerase PF01361.21 gi|124028454|ref|YP_001013774.1| - 0.027 14.4 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 Tautomerase enzyme DUF678 PF05077.12 gi|124028454|ref|YP_001013774.1| - 0.04 14.0 0.3 0.12 12.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Nitroreductase PF00881.24 gi|124028455|ref|YP_001013775.1| - 6.2e-10 39.4 0.1 7.6e-10 39.1 0.1 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|124028455|ref|YP_001013775.1| - 3.3e-06 26.8 0.0 3.7e-06 26.7 0.0 1.0 1 0 0 1 1 1 1 Putative TM nitroreductase DUF296 PF03479.15 gi|124028456|ref|YP_001013776.1| - 3.1e-14 53.3 0.1 3.8e-14 52.9 0.1 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Peptidase_C15 PF01470.17 gi|124028457|ref|YP_001013777.1| - 6.6e-31 108.1 0.0 7.5e-31 107.9 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Cons_hypoth698 PF03601.14 gi|124028458|ref|YP_001013778.1| - 0.19 10.6 0.0 0.26 10.2 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 698 LAGLIDADG_3 PF14528.6 gi|124028459|ref|YP_001013779.1| - 4.7e-07 30.0 0.0 8.1e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 LAGLIDADG-like domain Hom_end PF05204.14 gi|124028459|ref|YP_001013779.1| - 0.0051 17.0 0.0 0.0097 16.1 0.0 1.5 1 0 0 1 1 1 1 Homing endonuclease DUF4600 PF15372.6 gi|124028459|ref|YP_001013779.1| - 0.059 13.8 0.3 0.095 13.1 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4600) AAA_35 PF14516.6 gi|124028459|ref|YP_001013779.1| - 0.14 11.0 0.7 1.3 7.8 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain RNF220 PF15926.5 gi|124028459|ref|YP_001013779.1| - 0.15 11.7 0.1 0.17 11.4 0.1 1.1 1 0 0 1 1 1 0 E3 ubiquitin-protein ligase RNF220 DUF104 PF01954.16 gi|124028460|ref|YP_001013780.1| - 5.5e-20 71.6 2.9 6.2e-20 71.4 2.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 PhoU_div PF01865.16 gi|124028460|ref|YP_001013780.1| - 0.071 12.4 0.4 0.13 11.6 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function DUF47 Hydantoinase_A PF01968.18 gi|124028463|ref|YP_001013783.1| - 5.5e-99 331.1 2.3 7e-98 327.5 0.7 2.2 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|124028463|ref|YP_001013783.1| - 2.1e-45 154.6 0.0 1.1e-44 152.3 0.0 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|124028463|ref|YP_001013783.1| - 0.0011 18.5 0.0 0.032 13.7 0.0 2.4 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|124028463|ref|YP_001013783.1| - 0.14 12.6 1.0 8.2 6.9 0.1 2.7 2 0 0 2 2 2 0 Cell division protein FtsA EutA PF06277.11 gi|124028463|ref|YP_001013783.1| - 0.43 9.4 1.2 2.4 6.9 0.1 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutA Hydantoinase_B PF02538.14 gi|124028464|ref|YP_001013784.1| - 3.1e-195 649.5 0.1 3.6e-195 649.3 0.1 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase TPP_enzyme_C PF02775.21 gi|124028465|ref|YP_001013785.1| - 1.3e-26 93.2 0.1 5e-26 91.3 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|124028465|ref|YP_001013785.1| - 3.3e-15 56.5 0.1 1e-14 54.9 0.1 1.9 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|124028465|ref|YP_001013785.1| - 1.2e-12 47.0 12.2 4.5e-08 32.6 2.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|124028465|ref|YP_001013785.1| - 1.9e-10 40.2 14.5 4.8e-05 23.2 4.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|124028465|ref|YP_001013785.1| - 1.6e-07 31.3 6.5 3.2e-07 30.4 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|124028465|ref|YP_001013785.1| - 7.8e-07 28.9 20.8 2.9e-05 23.9 2.2 3.0 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|124028465|ref|YP_001013785.1| - 4e-06 27.3 12.2 0.00011 22.7 11.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|124028465|ref|YP_001013785.1| - 1.3e-05 25.3 7.5 3.5e-05 23.9 7.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|124028465|ref|YP_001013785.1| - 4.7e-05 23.1 1.1 0.025 14.2 0.1 2.8 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_10 PF13237.6 gi|124028465|ref|YP_001013785.1| - 6e-05 23.1 12.8 0.00091 19.3 13.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|124028465|ref|YP_001013785.1| - 0.00074 20.4 5.7 0.0037 18.2 0.7 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|124028465|ref|YP_001013785.1| - 0.0026 18.3 6.2 0.036 14.6 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|124028465|ref|YP_001013785.1| - 0.0064 17.0 10.0 0.63 10.6 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|124028465|ref|YP_001013785.1| - 0.017 15.6 13.3 0.12 12.9 3.7 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Transket_pyr PF02779.24 gi|124028465|ref|YP_001013785.1| - 0.017 14.8 0.1 0.067 12.9 0.1 2.0 1 1 0 1 1 1 0 Transketolase, pyrimidine binding domain Fer4_15 PF13459.6 gi|124028465|ref|YP_001013785.1| - 0.019 15.7 11.7 0.77 10.5 1.4 3.0 2 1 1 3 3 2 0 4Fe-4S single cluster domain WHIM1 PF15612.6 gi|124028465|ref|YP_001013785.1| - 0.083 12.5 0.0 0.23 11.1 0.0 1.7 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 1 DXP_synthase_N PF13292.6 gi|124028465|ref|YP_001013785.1| - 0.14 11.3 0.1 0.23 10.6 0.1 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_8 PF13183.6 gi|124028465|ref|YP_001013785.1| - 0.21 12.1 13.5 18 5.9 13.5 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.18 gi|124028466|ref|YP_001013786.1| - 2.5e-36 125.4 0.0 3.1e-36 125.1 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase adh_short_C2 PF13561.6 gi|124028467|ref|YP_001013787.1| - 6.4e-50 169.9 0.0 8.5e-50 169.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|124028467|ref|YP_001013787.1| - 1.2e-36 126.1 0.0 1.4e-36 125.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|124028467|ref|YP_001013787.1| - 5.4e-09 36.2 0.1 1.1e-08 35.2 0.1 1.4 1 0 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|124028467|ref|YP_001013787.1| - 0.0081 16.4 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|124028467|ref|YP_001013787.1| - 0.013 15.4 0.1 0.021 14.7 0.1 1.3 1 0 0 1 1 1 0 NAD(P)H-binding 3HCDH_N PF02737.18 gi|124028467|ref|YP_001013787.1| - 0.058 13.3 0.2 0.13 12.1 0.1 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|124028467|ref|YP_001013787.1| - 0.13 12.2 0.1 0.28 11.1 0.1 1.5 1 1 0 1 1 1 0 Zinc-binding dehydrogenase DUF402 PF04167.13 gi|124028468|ref|YP_001013788.1| - 9.5e-14 51.3 0.3 1.8e-13 50.5 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|124028468|ref|YP_001013788.1| - 2.2e-08 33.9 0.3 3.6e-08 33.1 0.3 1.4 1 1 0 1 1 1 1 Ribonuclease E/G family DUF4810 PF16068.5 gi|124028468|ref|YP_001013788.1| - 0.047 14.2 0.1 0.11 13.1 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4810) T2SSM PF04612.12 gi|124028468|ref|YP_001013788.1| - 0.076 13.1 0.1 3.7 7.6 0.2 2.3 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DUF2205 PF10224.9 gi|124028468|ref|YP_001013788.1| - 2.9 8.0 4.7 13 5.8 0.1 2.4 2 0 0 2 2 2 0 Short coiled-coil protein RHH_1 PF01402.21 gi|124028469|ref|YP_001013789.1| - 3.2e-09 36.4 3.4 5.5e-09 35.6 3.4 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|124028469|ref|YP_001013789.1| - 6.5e-06 26.0 3.7 6.6e-06 26.0 3.1 1.3 1 1 0 1 1 1 1 Ribbon-helix-helix domain VapB_antitoxin PF09957.9 gi|124028469|ref|YP_001013789.1| - 0.094 12.7 1.3 0.21 11.5 1.3 1.7 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB UPF0147 PF03685.13 gi|124028470|ref|YP_001013790.1| - 2.9e-37 126.6 3.2 3.3e-37 126.4 3.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HEAT_2 PF13646.6 gi|124028470|ref|YP_001013790.1| - 0.05 14.0 0.2 0.092 13.1 0.2 1.5 1 1 0 1 1 1 0 HEAT repeats HEAT_PBS PF03130.16 gi|124028470|ref|YP_001013790.1| - 0.084 13.6 0.6 0.27 12.0 0.2 2.1 2 1 0 2 2 2 0 PBS lyase HEAT-like repeat UPF0253 PF06786.12 gi|124028470|ref|YP_001013790.1| - 0.092 13.0 0.3 2.3 8.6 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.12 gi|124028471|ref|YP_001013791.1| - 3e-15 56.1 0.2 4.4e-15 55.5 0.2 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|124028471|ref|YP_001013791.1| - 0.014 14.9 0.6 0.8 9.3 0.0 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Sun2_CC2 PF18580.1 gi|124028471|ref|YP_001013791.1| - 0.057 13.6 1.7 1.8 8.9 0.2 2.6 1 1 1 2 2 2 0 SUN2 coiled coil domain 2 DUF4099 PF13351.6 gi|124028471|ref|YP_001013791.1| - 0.099 12.9 0.1 7.1 7.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4099) Trm112p PF03966.16 gi|124028471|ref|YP_001013791.1| - 0.11 13.0 0.8 0.4 11.3 0.8 1.9 1 1 0 1 1 1 0 Trm112p-like protein zf-ribbon_3 PF13248.6 gi|124028471|ref|YP_001013791.1| - 0.15 11.5 1.2 1.4 8.5 1.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|124028471|ref|YP_001013791.1| - 0.68 10.0 2.6 1.4 9.0 0.3 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF126 PF01989.16 gi|124028472|ref|YP_001013792.1| - 2.2e-24 85.0 0.1 3.9e-24 84.2 0.1 1.4 1 0 0 1 1 1 1 Aconitase X swivel domain DUF521 PF04412.13 gi|124028473|ref|YP_001013793.1| - 3.9e-98 328.8 0.0 4.7e-98 328.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.16 gi|124028474|ref|YP_001013794.1| - 1.9e-77 260.9 0.0 2.3e-77 260.6 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CLP1_P PF16575.5 gi|124028475|ref|YP_001013795.1| - 1.3e-36 126.2 0.0 1.9e-36 125.6 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|124028475|ref|YP_001013795.1| - 0.057 13.5 0.0 1.8 8.6 0.1 2.3 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain PduV-EutP PF10662.9 gi|124028475|ref|YP_001013795.1| - 0.11 12.2 0.0 0.32 10.8 0.0 1.8 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ATPase PF06745.13 gi|124028477|ref|YP_001013797.1| - 2.2e-07 30.5 0.0 2.6e-05 23.7 0.0 2.1 1 1 1 2 2 2 1 KaiC AAA_16 PF13191.6 gi|124028477|ref|YP_001013797.1| - 1.3e-06 29.0 0.2 1.8e-06 28.4 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|124028477|ref|YP_001013797.1| - 1.3e-05 24.9 0.1 5.2e-05 22.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|124028477|ref|YP_001013797.1| - 1.6e-05 24.5 0.0 2.2e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|124028477|ref|YP_001013797.1| - 3.7e-05 23.5 0.0 5.5e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|124028477|ref|YP_001013797.1| - 0.00089 19.0 0.1 0.0013 18.4 0.1 1.3 1 1 0 1 1 1 1 IstB-like ATP binding protein PhoH PF02562.16 gi|124028477|ref|YP_001013797.1| - 0.0009 18.8 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA PF00004.29 gi|124028477|ref|YP_001013797.1| - 0.0011 19.4 0.1 0.0024 18.3 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zot PF05707.12 gi|124028477|ref|YP_001013797.1| - 0.0026 17.4 0.0 0.0032 17.1 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_22 PF13401.6 gi|124028477|ref|YP_001013797.1| - 0.0038 17.5 0.3 0.011 16.0 0.3 1.9 1 1 0 1 1 1 1 AAA domain Parvo_NS1 PF01057.17 gi|124028477|ref|YP_001013797.1| - 0.0072 15.5 0.0 0.0096 15.0 0.0 1.1 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|124028477|ref|YP_001013797.1| - 0.02 14.8 0.0 0.042 13.8 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|124028477|ref|YP_001013797.1| - 0.024 14.7 0.0 0.046 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|124028477|ref|YP_001013797.1| - 0.029 13.6 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|124028477|ref|YP_001013797.1| - 0.032 13.9 0.0 0.089 12.5 0.0 1.7 1 1 0 2 2 2 0 Sigma-54 interaction domain NACHT PF05729.12 gi|124028477|ref|YP_001013797.1| - 0.041 13.8 0.4 0.068 13.1 0.4 1.5 1 1 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|124028477|ref|YP_001013797.1| - 0.084 12.2 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CobU PF02283.16 gi|124028477|ref|YP_001013797.1| - 0.085 12.4 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DnaB_C PF03796.15 gi|124028477|ref|YP_001013797.1| - 0.093 12.0 0.4 1.7 7.9 0.3 2.4 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|124028477|ref|YP_001013797.1| - 0.16 10.6 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein CarS-like PF01864.17 gi|124028478|ref|YP_001013798.1| - 9.7e-35 120.1 0.7 5.4e-34 117.7 0.7 1.8 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|124028478|ref|YP_001013798.1| - 8.3e-09 35.6 1.4 1e-08 35.3 0.3 1.6 2 0 0 2 2 2 1 Cytidylyltransferase family Nop10p PF04135.12 gi|297616209|ref|YP_003710349.1| - 1.9e-23 82.2 1.7 2.2e-23 82.0 1.7 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|297616209|ref|YP_003710349.1| - 0.017 14.7 0.4 0.024 14.2 0.4 1.2 1 0 0 1 1 1 0 RecR protein DUF1258 PF06869.12 gi|297616209|ref|YP_003710349.1| - 0.021 14.3 0.1 0.027 14.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zf-CCHC_4 PF14392.6 gi|297616209|ref|YP_003710349.1| - 0.022 14.5 0.4 0.036 13.8 0.2 1.5 2 0 0 2 2 2 0 Zinc knuckle Desulfoferrod_N PF06397.12 gi|297616209|ref|YP_003710349.1| - 0.041 13.5 3.2 1.4 8.6 0.0 2.2 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF35_N PF12172.8 gi|297616209|ref|YP_003710349.1| - 0.067 13.1 4.0 0.067 13.1 4.0 1.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-FPG_IleRS PF06827.14 gi|297616209|ref|YP_003710349.1| - 0.11 12.4 4.7 4.6 7.2 0.3 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS HypA PF01155.19 gi|297616209|ref|YP_003710349.1| - 0.2 11.7 0.5 0.25 11.4 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|297616209|ref|YP_003710349.1| - 0.26 11.0 3.7 2 8.1 0.7 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_S14 PF00253.21 gi|297616209|ref|YP_003710349.1| - 1.1 9.1 6.4 2.1 8.2 0.5 2.6 2 1 1 3 3 3 0 Ribosomal protein S14p/S29e zf-RRN7 PF11781.8 gi|297616209|ref|YP_003710349.1| - 1.7 8.4 7.1 2.8 7.7 1.2 2.2 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 EIF_2_alpha PF07541.12 gi|124028479|ref|YP_001013799.1| - 1.1e-24 86.8 0.1 2.4e-24 85.6 0.1 1.6 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|124028479|ref|YP_001013799.1| - 8.4e-13 48.5 0.2 2.1e-12 47.2 0.2 1.7 1 0 0 1 1 1 1 S1 RNA binding domain Ribosomal_S27e PF01667.17 gi|124028480|ref|YP_001013800.1| - 2.7e-20 71.8 0.7 3e-20 71.7 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 DUF3797 PF12677.7 gi|124028480|ref|YP_001013800.1| - 0.00065 19.5 0.6 0.016 15.1 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.12 gi|124028480|ref|YP_001013800.1| - 0.0013 18.2 0.5 0.0018 17.8 0.5 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|124028480|ref|YP_001013800.1| - 0.0017 18.4 2.6 1.1 9.3 0.1 2.3 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|124028480|ref|YP_001013800.1| - 0.0057 16.0 0.9 0.27 10.7 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|124028480|ref|YP_001013800.1| - 0.0081 16.5 0.2 0.0096 16.3 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|124028480|ref|YP_001013800.1| - 0.0097 15.6 0.2 1.8 8.4 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-RRN7 PF11781.8 gi|124028480|ref|YP_001013800.1| - 0.013 15.1 0.8 0.92 9.2 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_ribbon_SprT PF17283.2 gi|124028480|ref|YP_001013800.1| - 0.018 14.9 0.4 4.8 7.2 0.0 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|124028480|ref|YP_001013800.1| - 0.027 14.5 0.1 0.031 14.3 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|124028480|ref|YP_001013800.1| - 0.047 13.7 0.9 0.068 13.2 0.9 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain CcmH PF03918.14 gi|124028480|ref|YP_001013800.1| - 0.049 12.9 0.5 0.29 10.4 0.0 1.9 1 1 1 2 2 2 0 Cytochrome C biogenesis protein DZR PF12773.7 gi|124028480|ref|YP_001013800.1| - 0.053 13.6 0.5 0.091 12.8 0.5 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|124028480|ref|YP_001013800.1| - 0.062 13.2 2.1 2.6 8.0 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PADR1 PF08063.12 gi|124028480|ref|YP_001013800.1| - 0.067 13.0 0.7 0.33 10.8 1.0 1.8 1 1 1 2 2 2 0 PADR1 (NUC008) domain Zn-ribbon_8 PF09723.10 gi|124028480|ref|YP_001013800.1| - 0.13 12.4 1.1 0.54 10.4 1.1 1.9 1 1 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.18 gi|124028480|ref|YP_001013800.1| - 0.2 11.6 1.4 2 8.3 1.4 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) Desulfoferrod_N PF06397.12 gi|124028480|ref|YP_001013800.1| - 0.38 10.4 7.4 1.6 8.4 0.1 3.0 2 1 1 3 3 3 0 Desulfoferrodoxin, N-terminal domain Ribosomal_L44 PF00935.19 gi|124028481|ref|YP_001013801.1| - 1.9e-28 98.7 12.2 2.5e-28 98.3 12.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zinc_ribbon_4 PF13717.6 gi|124028481|ref|YP_001013801.1| - 0.042 13.8 4.3 0.35 10.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|124028481|ref|YP_001013801.1| - 0.051 13.7 1.6 1 9.5 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF1660 PF07874.11 gi|124028481|ref|YP_001013801.1| - 0.086 13.3 1.4 0.56 10.7 0.1 2.1 2 0 0 2 2 2 0 Prophage protein (DUF1660) Ribosomal_L33 PF00471.20 gi|124028481|ref|YP_001013801.1| - 0.12 12.9 0.4 0.12 12.9 0.4 2.9 2 1 1 3 3 3 0 Ribosomal protein L33 CxC5 PF18718.1 gi|124028481|ref|YP_001013801.1| - 0.28 11.3 6.2 0.95 9.6 1.7 2.1 1 1 1 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases zinc_ribbon_2 PF13240.6 gi|124028481|ref|YP_001013801.1| - 0.3 10.9 5.3 4.9 7.0 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DM PF00751.18 gi|124028481|ref|YP_001013801.1| - 0.41 10.6 6.7 3 7.8 1.7 2.3 2 0 0 2 2 2 0 DM DNA binding domain zinc_ribbon_5 PF13719.6 gi|124028481|ref|YP_001013801.1| - 0.84 9.4 6.8 5.7 6.8 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|124028481|ref|YP_001013801.1| - 1.5 8.3 7.8 1.5 8.4 0.1 2.5 2 1 0 2 2 2 0 Mu-like prophage protein Com Rdx PF10262.9 gi|124028481|ref|YP_001013801.1| - 6 7.1 6.3 0.99 9.6 0.5 2.4 1 1 2 3 3 3 0 Rdx family TRP_2 PF08344.11 gi|124028482|ref|YP_001013802.1| - 0.018 15.2 0.0 0.031 14.5 0.0 1.4 1 0 0 1 1 1 0 Transient receptor ion channel II DNA_primase_S PF01896.19 gi|124028483|ref|YP_001013803.1| - 6e-14 52.5 0.0 2.6e-13 50.4 0.0 2.0 1 1 0 1 1 1 1 DNA primase small subunit PCNA_C PF02747.15 gi|124028484|ref|YP_001013804.1| - 1.8e-14 54.0 0.8 2.9e-14 53.4 0.3 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|124028484|ref|YP_001013804.1| - 3.4e-14 52.6 0.0 1.1e-13 51.0 0.0 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad1 PF02144.16 gi|124028484|ref|YP_001013804.1| - 4.3e-07 29.3 0.1 7.7e-07 28.4 0.1 1.3 1 1 0 1 1 1 1 Repair protein Rad1/Rec1/Rad17 Vps4_C PF09336.10 gi|124028484|ref|YP_001013804.1| - 0.077 13.0 0.2 2.3 8.3 0.0 2.6 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain TFIIS_C PF01096.18 gi|124028485|ref|YP_001013805.1| - 3.6e-20 71.5 8.4 7.7e-19 67.3 1.9 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|124028485|ref|YP_001013805.1| - 3.4e-11 42.8 6.2 1.5e-08 34.4 0.3 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|124028485|ref|YP_001013805.1| - 2e-09 37.2 10.0 0.00013 21.9 1.3 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DUF2387 PF09526.10 gi|124028485|ref|YP_001013805.1| - 1.5e-07 31.4 6.5 0.0011 19.1 0.3 2.2 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.12 gi|124028485|ref|YP_001013805.1| - 3.4e-07 29.7 8.7 0.0001 21.7 0.3 3.3 3 1 1 4 4 3 2 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|124028485|ref|YP_001013805.1| - 6.8e-07 29.1 2.8 1.8e-05 24.6 0.1 2.8 3 0 0 3 3 2 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|124028485|ref|YP_001013805.1| - 8.3e-06 25.6 7.5 0.007 16.3 1.0 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|124028485|ref|YP_001013805.1| - 9.5e-06 25.4 11.0 0.00026 20.8 1.8 3.5 3 1 0 3 3 3 1 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|124028485|ref|YP_001013805.1| - 3e-05 23.2 10.0 0.25 10.8 0.0 4.1 4 0 0 4 4 4 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|124028485|ref|YP_001013805.1| - 4e-05 23.9 4.4 0.0096 16.3 0.1 2.3 2 0 0 2 2 2 2 Restriction alleviation protein Lar DZR PF12773.7 gi|124028485|ref|YP_001013805.1| - 9.1e-05 22.4 6.8 0.024 14.7 0.5 2.8 2 1 0 2 2 2 2 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|124028485|ref|YP_001013805.1| - 0.00028 20.9 8.3 4.7 7.4 0.1 4.1 3 1 0 4 4 4 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|124028485|ref|YP_001013805.1| - 0.0015 17.8 0.7 0.0015 17.8 0.7 2.6 2 1 0 2 2 2 1 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|124028485|ref|YP_001013805.1| - 0.0022 17.6 15.9 0.37 10.6 0.3 4.2 4 0 0 4 4 4 1 zinc-ribbon domain Rubredoxin PF00301.20 gi|124028485|ref|YP_001013805.1| - 0.0024 17.8 13.6 0.29 11.2 0.1 4.0 4 0 0 4 4 4 2 Rubredoxin zf-ACC PF17848.1 gi|124028485|ref|YP_001013805.1| - 0.003 17.6 9.4 0.44 10.7 0.7 4.2 4 1 0 4 4 3 1 Acetyl-coA carboxylase zinc finger domain TerY_C PF15616.6 gi|124028485|ref|YP_001013805.1| - 0.0058 16.7 0.5 0.18 11.9 0.1 2.2 2 0 0 2 2 2 1 TerY-C metal binding domain zinc_ribbon_10 PF10058.9 gi|124028485|ref|YP_001013805.1| - 0.008 15.9 9.1 0.22 11.3 1.1 3.1 2 2 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_recom PF13408.6 gi|124028485|ref|YP_001013805.1| - 0.013 16.0 0.7 0.013 16.0 0.7 2.6 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Rubredoxin_2 PF18073.1 gi|124028485|ref|YP_001013805.1| - 0.014 15.1 13.4 0.91 9.3 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain Cys_rich_CPCC PF14206.6 gi|124028485|ref|YP_001013805.1| - 0.023 14.5 4.9 0.16 11.8 0.1 3.0 3 0 0 3 3 3 0 Cysteine-rich CPCC zinc_ribbon_9 PF14369.6 gi|124028485|ref|YP_001013805.1| - 0.029 14.6 10.5 2.4 8.5 4.2 3.7 3 1 0 3 3 3 0 zinc-ribbon DUF2752 PF10825.8 gi|124028485|ref|YP_001013805.1| - 0.033 14.2 3.6 6.8 6.8 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2752) A2L_zn_ribbon PF08792.10 gi|124028485|ref|YP_001013805.1| - 0.035 13.8 6.8 4.5 7.1 0.0 3.8 4 0 0 4 4 4 0 A2L zinc ribbon domain YhfH PF14149.6 gi|124028485|ref|YP_001013805.1| - 0.036 14.0 5.2 12 6.0 0.1 4.1 4 0 0 4 4 4 0 YhfH-like protein zf-NADH-PPase PF09297.11 gi|124028485|ref|YP_001013805.1| - 0.036 13.7 16.8 0.32 10.7 6.9 3.6 3 1 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain DUF2225 PF09986.9 gi|124028485|ref|YP_001013805.1| - 0.04 13.6 0.1 0.04 13.6 0.1 2.5 2 1 1 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-UBP PF02148.19 gi|124028485|ref|YP_001013805.1| - 0.047 14.0 3.5 0.52 10.7 1.0 2.6 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zinc_ribbon_13 PF09855.9 gi|124028485|ref|YP_001013805.1| - 0.051 13.7 9.7 2.7 8.2 0.0 3.8 3 1 1 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-C4_Topoisom PF01396.19 gi|124028485|ref|YP_001013805.1| - 0.052 13.3 10.9 0.1 12.4 0.1 3.4 4 0 0 4 4 3 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.9 gi|124028485|ref|YP_001013805.1| - 0.052 13.6 21.8 3.2 7.9 1.2 4.4 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS91 PF14319.6 gi|124028485|ref|YP_001013805.1| - 0.058 13.4 7.0 3 7.9 0.8 3.1 2 2 0 2 2 2 0 Transposase zinc-binding domain zf-ISL3 PF14690.6 gi|124028485|ref|YP_001013805.1| - 0.062 14.0 13.3 3 8.6 0.2 3.7 2 2 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Auto_anti-p27 PF06677.12 gi|124028485|ref|YP_001013805.1| - 0.063 13.5 9.3 0.15 12.2 1.8 3.0 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NRDD PF13597.6 gi|124028485|ref|YP_001013805.1| - 0.065 12.0 2.0 2.5 6.8 0.3 2.0 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase Ima1_N PF09779.9 gi|124028485|ref|YP_001013805.1| - 0.066 14.1 1.9 0.081 13.8 0.2 1.8 1 1 1 2 2 2 0 Ima1 N-terminal domain Mu-like_Com PF10122.9 gi|124028485|ref|YP_001013805.1| - 0.069 12.6 8.7 1.1 8.7 0.4 3.7 3 1 1 4 4 4 0 Mu-like prophage protein Com NOB1_Zn_bind PF08772.11 gi|124028485|ref|YP_001013805.1| - 0.076 13.2 11.8 0.18 12.0 0.3 3.7 2 2 1 4 4 3 0 Nin one binding (NOB1) Zn-ribbon like GFA PF04828.14 gi|124028485|ref|YP_001013805.1| - 0.077 13.3 7.4 2.1 8.7 1.3 3.2 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme HypA PF01155.19 gi|124028485|ref|YP_001013805.1| - 0.082 12.9 6.0 0.9 9.6 0.4 2.8 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|124028485|ref|YP_001013805.1| - 0.092 12.7 8.5 14 5.7 0.2 4.1 4 0 0 4 4 4 0 zinc-ribbon domain IBR PF01485.21 gi|124028485|ref|YP_001013805.1| - 0.18 12.1 7.7 0.45 10.8 0.7 2.8 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain zf-tcix PF14952.6 gi|124028485|ref|YP_001013805.1| - 0.19 11.3 10.4 4.6 6.9 0.1 4.0 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding zf-FPG_IleRS PF06827.14 gi|124028485|ref|YP_001013805.1| - 0.22 11.4 13.6 0.58 10.1 4.2 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Ribosomal_L37e PF01907.19 gi|124028485|ref|YP_001013805.1| - 0.32 11.2 9.9 9.8 6.4 0.1 3.6 3 1 0 3 3 3 0 Ribosomal protein L37e zinc_ribbon_11 PF11682.8 gi|124028485|ref|YP_001013805.1| - 0.36 10.8 7.0 1 9.4 0.1 3.5 1 1 3 4 4 4 0 Probable zinc-ribbon zf-C2HC5 PF06221.13 gi|124028485|ref|YP_001013805.1| - 0.4 10.7 3.9 3.2 7.8 0.2 2.9 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type DUF35_N PF12172.8 gi|124028485|ref|YP_001013805.1| - 0.44 10.5 12.8 6.7 6.7 0.4 4.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1610 PF07754.11 gi|124028485|ref|YP_001013805.1| - 0.54 10.3 13.8 11 6.1 0.1 4.2 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) CpXC PF14353.6 gi|124028485|ref|YP_001013805.1| - 0.54 10.3 9.9 2.2 8.3 0.1 3.8 1 1 2 4 4 4 0 CpXC protein TackOD1 PF18551.1 gi|124028485|ref|YP_001013805.1| - 0.58 9.8 4.0 10 5.7 1.6 2.8 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zf-Mss51 PF13824.6 gi|124028485|ref|YP_001013805.1| - 1 9.5 12.2 5.2 7.2 1.6 3.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 FYVE_2 PF02318.16 gi|124028485|ref|YP_001013805.1| - 1.4 9.1 5.7 1.5 9.1 0.4 2.5 1 1 1 2 2 2 0 FYVE-type zinc finger zf_UBZ PF18439.1 gi|124028485|ref|YP_001013805.1| - 1.6 8.4 10.1 4.2 7.0 0.1 3.6 4 0 0 4 4 3 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|124028485|ref|YP_001013805.1| - 1.7 8.6 20.3 1.6 8.7 0.9 4.1 3 1 1 4 4 4 0 SprT-like zinc ribbon domain DUF3268 PF11672.8 gi|124028485|ref|YP_001013805.1| - 2.1 8.7 6.4 2.7 8.3 0.5 2.5 1 1 1 2 2 2 0 zinc-finger-containing domain zf-H2C2_2 PF13465.6 gi|124028485|ref|YP_001013805.1| - 2.2 8.8 10.3 16 6.1 0.0 3.7 4 0 0 4 4 3 0 Zinc-finger double domain HalOD2 PF18547.1 gi|124028485|ref|YP_001013805.1| - 2.4 8.1 8.7 2.3 8.2 0.1 3.6 4 0 0 4 4 4 0 Halobacterial output domain 2 Prok-RING_1 PF14446.6 gi|124028485|ref|YP_001013805.1| - 3 7.8 9.2 1.9 8.5 0.7 3.1 3 1 0 3 3 2 0 Prokaryotic RING finger family 1 Rdx PF10262.9 gi|124028485|ref|YP_001013805.1| - 3.1 8.1 4.8 11 6.3 0.0 3.2 4 0 0 4 4 3 0 Rdx family Ribosomal_S27 PF01599.19 gi|124028485|ref|YP_001013805.1| - 3.9 7.7 9.8 1.3 9.2 1.0 2.9 3 0 0 3 3 2 0 Ribosomal protein S27a Ogr_Delta PF04606.12 gi|124028485|ref|YP_001013805.1| - 5.8 7.0 12.1 0.68 10.0 0.4 3.3 2 2 1 3 3 3 0 Ogr/Delta-like zinc finger zf-ZPR1 PF03367.13 gi|124028485|ref|YP_001013805.1| - 7.1 6.5 5.9 12 5.7 0.2 2.8 2 2 0 2 2 2 0 ZPR1 zinc-finger domain Ribosomal_L32p PF01783.23 gi|124028485|ref|YP_001013805.1| - 9.4 6.6 11.4 6.3 7.1 0.1 3.3 3 1 0 3 3 2 0 Ribosomal L32p protein family RNA_pol_L_2 PF13656.6 gi|124028487|ref|YP_001013807.1| - 1.9e-18 66.0 0.0 2.4e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|124028487|ref|YP_001013807.1| - 0.011 15.2 0.0 0.029 13.8 0.0 1.7 1 1 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2514 PF10721.9 gi|124028487|ref|YP_001013807.1| - 0.066 13.2 0.0 0.13 12.3 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2514) DUF2067 PF09840.9 gi|124028488|ref|YP_001013808.1| - 1.4e-51 174.7 0.7 1.6e-51 174.5 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) ECR1_N PF14382.6 gi|124028489|ref|YP_001013809.1| - 5.9e-11 42.0 0.0 2.3e-10 40.1 0.0 1.9 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region zf-NADH-PPase PF09297.11 gi|124028489|ref|YP_001013809.1| - 1.4e-05 24.7 1.1 2.1e-05 24.1 1.1 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.12 gi|124028489|ref|YP_001013809.1| - 0.0037 17.4 1.4 0.0059 16.7 1.4 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_recom PF13408.6 gi|124028489|ref|YP_001013809.1| - 0.0048 17.4 0.1 0.0091 16.5 0.1 1.4 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain DZR PF12773.7 gi|124028489|ref|YP_001013809.1| - 0.0076 16.3 0.3 0.012 15.6 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|124028489|ref|YP_001013809.1| - 0.06 13.1 1.8 0.79 9.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|124028489|ref|YP_001013809.1| - 0.1 12.5 0.2 0.15 12.0 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2318 PF10080.9 gi|124028489|ref|YP_001013809.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) C1_1 PF00130.22 gi|124028489|ref|YP_001013809.1| - 0.19 11.6 0.3 0.31 11.0 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Nudix_N_2 PF14803.6 gi|124028489|ref|YP_001013809.1| - 0.28 11.2 3.2 1 9.3 3.0 2.0 1 1 0 1 1 1 0 Nudix N-terminal zf-dskA_traR PF01258.17 gi|124028489|ref|YP_001013809.1| - 0.57 10.2 4.6 12 6.0 0.3 3.3 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Methyltransf_25 PF13649.6 gi|124028490|ref|YP_001013810.1| - 0.0005 20.7 0.0 0.00074 20.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|124028490|ref|YP_001013810.1| - 0.0059 17.2 0.0 0.011 16.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|124028490|ref|YP_001013810.1| - 0.0074 15.7 0.2 0.01 15.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|124028490|ref|YP_001013810.1| - 0.051 13.4 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|124028490|ref|YP_001013810.1| - 0.083 12.4 0.0 0.16 11.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Diphthamide_syn PF01866.17 gi|124028491|ref|YP_001013811.1| - 2.7e-62 210.9 0.0 3.6e-62 210.6 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Ribosomal_L16 PF00252.18 gi|124028492|ref|YP_001013812.1| - 9e-38 129.3 0.0 1.1e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e ArfA PF03889.13 gi|124028492|ref|YP_001013812.1| - 0.023 14.1 0.0 0.058 12.9 0.0 1.7 1 0 0 1 1 1 0 Alternative ribosome-rescue factor A UPF0020 PF01170.18 gi|124028493|ref|YP_001013813.1| - 1.7e-37 129.1 0.2 7.7e-37 126.9 0.2 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|124028493|ref|YP_001013813.1| - 7.7e-19 68.2 0.2 1.3e-18 67.5 0.2 1.4 1 0 0 1 1 1 1 THUMP domain MTS PF05175.14 gi|124028493|ref|YP_001013813.1| - 5.4e-08 32.6 0.0 1e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|124028493|ref|YP_001013813.1| - 5.9e-08 32.6 0.1 1.4e-07 31.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|124028493|ref|YP_001013813.1| - 7.1e-08 33.1 0.0 4.3e-07 30.5 0.0 2.2 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|124028493|ref|YP_001013813.1| - 1.1e-07 31.5 0.0 1.8e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|124028493|ref|YP_001013813.1| - 0.0023 18.5 0.0 0.0072 17.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|124028493|ref|YP_001013813.1| - 0.0034 17.1 0.0 0.0079 15.9 0.0 1.5 1 0 0 1 1 1 1 DNA methylase Methyltransf_3 PF01596.17 gi|124028493|ref|YP_001013813.1| - 0.0039 16.4 0.0 0.0074 15.5 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase PrmA PF06325.13 gi|124028493|ref|YP_001013813.1| - 0.004 16.6 0.1 0.01 15.2 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|124028493|ref|YP_001013813.1| - 0.0094 15.6 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|124028493|ref|YP_001013813.1| - 0.0097 15.3 0.0 0.028 13.8 0.0 1.7 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.16 gi|124028493|ref|YP_001013813.1| - 0.0097 15.7 0.1 0.022 14.5 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein N6_Mtase PF02384.16 gi|124028493|ref|YP_001013813.1| - 0.096 11.9 0.0 0.31 10.3 0.0 1.7 1 1 0 1 1 1 0 N-6 DNA Methylase SpoU_methylase PF00588.19 gi|124028494|ref|YP_001013814.1| - 2.6e-30 105.5 0.0 3.5e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|124028494|ref|YP_001013814.1| - 1.2e-06 28.5 0.0 6.4e-05 22.9 0.0 2.3 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase MTS PF05175.14 gi|124028495|ref|YP_001013815.1| - 4.3e-08 32.9 0.0 5.8e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|124028495|ref|YP_001013815.1| - 3.6e-07 29.9 0.3 4.7e-07 29.5 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|124028495|ref|YP_001013815.1| - 1.8e-05 25.4 0.0 3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|124028495|ref|YP_001013815.1| - 7.2e-05 22.8 0.0 0.00011 22.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|124028495|ref|YP_001013815.1| - 0.00011 22.0 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|124028495|ref|YP_001013815.1| - 0.00032 20.3 0.0 0.00045 19.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|124028495|ref|YP_001013815.1| - 0.0024 17.6 0.0 0.003 17.2 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|124028495|ref|YP_001013815.1| - 0.0029 18.3 0.0 0.013 16.2 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|124028495|ref|YP_001013815.1| - 0.0044 17.6 0.1 0.0098 16.5 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|124028495|ref|YP_001013815.1| - 0.011 15.8 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|124028495|ref|YP_001013815.1| - 0.034 13.9 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_16 PF10294.9 gi|124028495|ref|YP_001013815.1| - 0.042 13.6 0.1 0.054 13.2 0.1 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_23 PF13489.6 gi|124028495|ref|YP_001013815.1| - 0.063 13.1 0.0 0.079 12.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|124028495|ref|YP_001013815.1| - 0.077 12.7 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|124028496|ref|YP_001013816.1| - 1.5e-23 83.3 0.0 2.3e-22 79.3 0.0 2.0 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|124028496|ref|YP_001013816.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF655 PF04919.12 gi|124028497|ref|YP_001013817.1| - 2.9e-57 193.5 0.9 3.8e-57 193.2 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|124028497|ref|YP_001013817.1| - 5.3e-05 23.4 0.1 0.00036 20.7 0.0 2.2 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|124028497|ref|YP_001013817.1| - 0.0033 17.7 0.1 0.047 14.0 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|124028497|ref|YP_001013817.1| - 0.16 12.6 0.2 1.4 9.6 0.2 2.2 1 1 0 1 1 1 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.16 gi|124028498|ref|YP_001013818.1| - 5.9e-09 36.3 0.0 6.5e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 ANTAR PF03861.14 gi|124028498|ref|YP_001013818.1| - 0.011 15.5 0.0 0.078 12.8 0.0 2.3 2 1 0 2 2 2 0 ANTAR domain Ribosomal_L21e PF01157.18 gi|124028499|ref|YP_001013819.1| - 1.1e-37 127.9 2.4 1.3e-37 127.6 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|124028500|ref|YP_001013820.1| - 5.6e-16 59.0 2.5 2.7e-15 56.7 0.6 2.6 3 0 0 3 3 3 1 THUMP domain Ribosomal_S18 PF01084.20 gi|124028500|ref|YP_001013820.1| - 0.071 13.3 0.1 0.17 12.1 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein S18 SRP54 PF00448.22 gi|124028501|ref|YP_001013821.1| - 1.1e-70 237.2 0.1 1.7e-70 236.7 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|124028501|ref|YP_001013821.1| - 7.1e-29 100.4 0.7 5.8e-28 97.4 0.3 2.5 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|124028501|ref|YP_001013821.1| - 4.1e-14 52.5 1.0 1.7e-13 50.6 0.0 2.6 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain MeaB PF03308.16 gi|124028501|ref|YP_001013821.1| - 3.2e-05 23.0 0.3 7.8e-05 21.8 0.3 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|124028501|ref|YP_001013821.1| - 4.5e-05 23.1 0.5 0.00045 19.9 0.4 2.4 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|124028501|ref|YP_001013821.1| - 0.00013 22.0 0.0 0.00035 20.6 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|124028501|ref|YP_001013821.1| - 0.00022 21.0 2.7 0.00063 19.5 0.9 2.5 2 2 1 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|124028501|ref|YP_001013821.1| - 0.00023 21.4 0.0 0.032 14.5 0.0 2.9 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.6 gi|124028501|ref|YP_001013821.1| - 0.00027 21.1 0.0 0.00091 19.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|124028501|ref|YP_001013821.1| - 0.00053 19.9 0.3 0.0036 17.2 0.1 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|124028501|ref|YP_001013821.1| - 0.00071 19.6 0.1 0.0038 17.3 0.1 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|124028501|ref|YP_001013821.1| - 0.001 18.4 0.0 0.0021 17.4 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|124028501|ref|YP_001013821.1| - 0.001 19.5 0.0 0.0035 17.7 0.0 1.8 2 0 0 2 2 1 1 AAA ATPase domain ATP_bind_1 PF03029.17 gi|124028501|ref|YP_001013821.1| - 0.0067 16.2 0.7 0.022 14.5 0.3 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Glyco_transf_4 PF13439.6 gi|124028501|ref|YP_001013821.1| - 0.0078 16.2 0.0 0.14 12.1 0.0 2.3 2 0 0 2 2 2 1 Glycosyltransferase Family 4 E3_UbLigase_R4 PF13764.6 gi|124028501|ref|YP_001013821.1| - 0.01 14.1 0.2 0.013 13.7 0.2 1.1 1 0 0 1 1 1 0 E3 ubiquitin-protein ligase UBR4 PFOR_II PF17147.4 gi|124028501|ref|YP_001013821.1| - 0.01 16.1 0.3 0.33 11.3 0.1 2.8 1 1 2 3 3 3 0 Pyruvate:ferredoxin oxidoreductase core domain II LpxK PF02606.14 gi|124028501|ref|YP_001013821.1| - 0.015 14.4 0.3 0.038 13.1 0.1 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase NTPase_1 PF03266.15 gi|124028501|ref|YP_001013821.1| - 0.017 15.0 1.9 0.19 11.6 0.2 3.0 3 0 0 3 3 3 0 NTPase AAA_17 PF13207.6 gi|124028501|ref|YP_001013821.1| - 0.021 15.3 1.0 0.1 13.0 1.0 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|124028501|ref|YP_001013821.1| - 0.022 15.2 0.7 0.63 10.5 0.2 3.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) 6PF2K PF01591.18 gi|124028501|ref|YP_001013821.1| - 0.034 13.5 0.0 0.067 12.5 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase DUF373 PF04123.13 gi|124028501|ref|YP_001013821.1| - 0.039 13.4 0.2 0.064 12.7 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) AAA_18 PF13238.6 gi|124028501|ref|YP_001013821.1| - 0.061 13.9 0.5 0.18 12.3 0.2 2.2 2 1 0 2 2 1 0 AAA domain APS_kinase PF01583.20 gi|124028501|ref|YP_001013821.1| - 0.063 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase PLU-1 PF08429.11 gi|124028501|ref|YP_001013821.1| - 0.088 12.0 0.2 0.17 11.0 0.2 1.4 1 0 0 1 1 1 0 PLU-1-like protein Met_10 PF02475.16 gi|124028501|ref|YP_001013821.1| - 0.089 12.5 0.2 10 5.8 0.0 2.5 2 0 0 2 2 2 0 Met-10+ like-protein AAA_5 PF07728.14 gi|124028501|ref|YP_001013821.1| - 0.091 12.8 0.3 0.59 10.1 0.1 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|124028501|ref|YP_001013821.1| - 0.094 13.0 0.1 0.21 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|124028501|ref|YP_001013821.1| - 0.11 12.2 0.1 0.47 10.1 0.0 2.2 3 1 0 3 3 2 0 AAA domain AAA_31 PF13614.6 gi|124028501|ref|YP_001013821.1| - 0.2 11.6 0.1 0.65 9.9 0.1 1.8 1 0 0 1 1 1 0 AAA domain eIF-5a PF01287.20 gi|124028502|ref|YP_001013822.1| - 3.2e-08 33.6 1.0 5e-08 32.9 1.0 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|124028502|ref|YP_001013822.1| - 1.7e-05 24.8 0.3 7.4e-05 22.7 0.0 2.0 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|124028502|ref|YP_001013822.1| - 0.00093 19.2 0.7 0.0017 18.3 0.7 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain ABC_tran PF00005.27 gi|124028504|ref|YP_001013824.1| - 0.026 15.0 0.3 0.036 14.6 0.3 1.2 1 0 0 1 1 1 0 ABC transporter Robl_LC7 PF03259.17 gi|124028505|ref|YP_001013825.1| - 1.3e-06 28.1 1.2 1.6e-06 27.8 1.2 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain TauE PF01925.19 gi|124028506|ref|YP_001013826.1| - 1.1e-43 149.5 51.9 1.3e-43 149.3 51.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CN_hydrolase PF00795.22 gi|124028507|ref|YP_001013827.1| - 2.1e-41 142.0 0.0 2.3e-41 141.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Hyperthermus_butylicus_DSM_5456_uid57755/NC_008818.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Hyperthermus_butylicus_DSM_5456_uid57755/NC_008818.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Hyperthermus_butylicus_DSM_5456_uid57755/NC_008818.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Hyperthermus_butylicus_DSM_5456_uid57755/NC_008818.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 11:02:59 2019 # [ok]