# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|320100211|ref|YP_004175803.1| - 3.4e-15 55.8 2.1 1.7e-14 53.6 0.2 2.8 2 1 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|320100211|ref|YP_004175803.1| - 6.2e-10 39.5 0.0 2.7e-09 37.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|320100211|ref|YP_004175803.1| - 4.1e-09 37.0 0.0 1.1e-08 35.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|320100211|ref|YP_004175803.1| - 3.1e-08 33.2 0.0 5.3e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein AAA_16 PF13191.6 gi|320100211|ref|YP_004175803.1| - 1.3e-07 32.2 0.0 8.9e-07 29.4 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|320100211|ref|YP_004175803.1| - 6e-07 29.6 0.4 1.2e-06 28.6 0.4 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|320100211|ref|YP_004175803.1| - 0.00028 20.2 0.0 0.00036 19.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|320100211|ref|YP_004175803.1| - 0.00037 19.7 0.0 0.00055 19.2 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Sigma54_activat PF00158.26 gi|320100211|ref|YP_004175803.1| - 0.0031 17.3 0.0 0.0056 16.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|320100211|ref|YP_004175803.1| - 0.0037 16.5 0.0 0.0067 15.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|320100211|ref|YP_004175803.1| - 0.0052 16.3 0.1 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|320100211|ref|YP_004175803.1| - 0.0097 15.6 0.0 0.029 14.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_32 PF13654.6 gi|320100211|ref|YP_004175803.1| - 0.014 14.2 0.4 0.95 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_assoc_2 PF16193.5 gi|320100211|ref|YP_004175803.1| - 0.019 15.3 0.1 0.061 13.7 0.1 1.8 1 0 0 1 1 1 0 AAA C-terminal domain T2SSE PF00437.20 gi|320100211|ref|YP_004175803.1| - 0.032 13.3 0.1 0.085 11.9 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein DEAD PF00270.29 gi|320100211|ref|YP_004175803.1| - 0.048 13.4 1.0 9.6 5.9 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.12 gi|320100211|ref|YP_004175803.1| - 0.058 13.3 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase_C PF13335.6 gi|320100211|ref|YP_004175803.1| - 0.07 13.8 1.9 0.11 13.2 0.3 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI C-terminal AAA_24 PF13479.6 gi|320100211|ref|YP_004175803.1| - 0.079 12.7 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain TIP49_C PF17856.1 gi|320100211|ref|YP_004175803.1| - 0.083 13.0 0.0 0.3 11.2 0.0 2.0 1 0 0 1 1 1 0 TIP49 AAA-lid domain Sigma54_activ_2 PF14532.6 gi|320100211|ref|YP_004175803.1| - 0.092 12.9 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|320100211|ref|YP_004175803.1| - 0.1 13.1 0.0 0.22 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|320100211|ref|YP_004175803.1| - 0.11 11.7 0.0 0.34 10.0 0.0 1.8 2 0 0 2 2 2 0 PIF1-like helicase TsaE PF02367.17 gi|320100211|ref|YP_004175803.1| - 0.14 12.1 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF99 PF01949.16 gi|320100212|ref|YP_004175804.1| - 2.3e-44 151.0 0.0 2.6e-44 150.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 PEPCK_GTP PF00821.18 gi|320100213|ref|YP_004175805.1| - 1.2e-100 336.8 0.0 1.7e-100 336.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|320100213|ref|YP_004175805.1| - 1e-61 208.3 0.0 1.4e-61 207.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain Aminotran_3 PF00202.21 gi|320100214|ref|YP_004175806.1| - 1.8e-103 346.4 0.0 2.1e-103 346.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|320100214|ref|YP_004175806.1| - 0.13 11.4 0.0 5.8 6.0 0.0 2.2 2 0 0 2 2 2 0 Aminotransferase class I and II Na_Ala_symp PF01235.17 gi|320100216|ref|YP_004175808.1| - 5.7e-108 361.7 24.4 7.6e-108 361.3 24.4 1.1 1 0 0 1 1 1 1 Sodium:alanine symporter family Radical_SAM PF04055.21 gi|320100217|ref|YP_004175809.1| - 1.4e-23 84.1 0.0 1.4e-23 84.1 0.0 2.3 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|320100217|ref|YP_004175809.1| - 2.4e-09 37.3 1.0 4.6e-09 36.4 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|320100217|ref|YP_004175809.1| - 5e-08 33.3 0.4 9.7e-08 32.4 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain ROS_MUCR PF05443.11 gi|320100217|ref|YP_004175809.1| - 0.026 14.6 0.1 0.054 13.5 0.1 1.4 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein zf-CHC2 PF01807.20 gi|320100217|ref|YP_004175809.1| - 0.12 12.2 1.1 3 7.7 0.5 2.5 2 0 0 2 2 2 0 CHC2 zinc finger AAA_18 PF13238.6 gi|320100218|ref|YP_004175810.1| - 1.3e-22 80.7 0.0 1.6e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|320100218|ref|YP_004175810.1| - 6e-05 23.5 0.1 0.00014 22.3 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|320100218|ref|YP_004175810.1| - 0.00032 21.1 0.1 0.0012 19.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|320100218|ref|YP_004175810.1| - 0.00089 19.4 0.1 0.0021 18.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|320100218|ref|YP_004175810.1| - 0.0024 17.8 0.0 0.005 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|320100218|ref|YP_004175810.1| - 0.0041 17.5 0.3 0.0053 17.1 0.3 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|320100218|ref|YP_004175810.1| - 0.0095 16.2 0.1 0.016 15.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|320100218|ref|YP_004175810.1| - 0.016 14.9 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 gi|320100218|ref|YP_004175810.1| - 0.018 14.9 0.1 1 9.2 0.1 2.3 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Viral_helicase1 PF01443.18 gi|320100218|ref|YP_004175810.1| - 0.02 14.7 0.1 0.029 14.1 0.1 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|320100218|ref|YP_004175810.1| - 0.033 14.5 0.1 0.051 13.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain SKI PF01202.22 gi|320100218|ref|YP_004175810.1| - 0.045 13.9 0.0 0.44 10.7 0.0 2.0 2 0 0 2 2 2 0 Shikimate kinase CoaE PF01121.20 gi|320100218|ref|YP_004175810.1| - 0.059 13.0 0.1 4.6 6.9 0.0 2.2 1 1 1 2 2 2 0 Dephospho-CoA kinase KTI12 PF08433.10 gi|320100218|ref|YP_004175810.1| - 0.061 12.8 0.0 0.074 12.5 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF2075 PF09848.9 gi|320100218|ref|YP_004175810.1| - 0.083 12.1 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IPT PF01745.16 gi|320100218|ref|YP_004175810.1| - 0.2 11.0 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 Isopentenyl transferase AAA_30 PF13604.6 gi|320100218|ref|YP_004175810.1| - 0.22 11.2 0.1 0.38 10.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|320100219|ref|YP_004175811.1| - 3.4e-15 56.1 0.0 5.9e-11 42.5 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|320100219|ref|YP_004175811.1| - 6e-14 52.3 0.0 9.3e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|320100219|ref|YP_004175811.1| - 5.3e-07 29.3 0.0 4.6e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|320100219|ref|YP_004175811.1| - 5.6e-06 26.5 1.4 0.54 10.3 0.0 3.1 2 1 0 3 3 3 2 Dynamin family GTP_EFTU PF00009.27 gi|320100219|ref|YP_004175811.1| - 0.0016 18.0 0.0 0.006 16.1 0.0 1.7 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|320100219|ref|YP_004175811.1| - 0.016 15.6 0.0 0.081 13.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain PduV-EutP PF10662.9 gi|320100219|ref|YP_004175811.1| - 0.044 13.5 0.0 0.085 12.6 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ThiS PF02597.20 gi|320100220|ref|YP_004175812.1| - 0.00014 22.4 0.1 0.00015 22.3 0.1 1.1 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|320100220|ref|YP_004175812.1| - 0.01 15.9 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 ThiS-like ubiquitin Thioredoxin_14 PF18402.1 gi|320100220|ref|YP_004175812.1| - 0.1 12.6 0.0 0.1 12.6 0.0 1.0 1 0 0 1 1 1 0 Thioredoxin-like domain ThiF PF00899.21 gi|320100221|ref|YP_004175813.1| - 2.7e-55 187.4 0.0 3.4e-55 187.1 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|320100221|ref|YP_004175813.1| - 5.1e-05 23.5 0.0 0.00011 22.4 0.0 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|320100221|ref|YP_004175813.1| - 0.045 13.4 0.3 0.074 12.7 0.3 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PglD_N PF17836.1 gi|320100221|ref|YP_004175813.1| - 0.12 13.0 0.1 0.26 12.0 0.1 1.6 1 0 0 1 1 1 0 PglD N-terminal domain Shikimate_DH PF01488.20 gi|320100221|ref|YP_004175813.1| - 0.2 11.7 0.7 1.3 9.0 0.1 2.3 2 1 1 3 3 3 0 Shikimate / quinate 5-dehydrogenase ThiS PF02597.20 gi|320100222|ref|YP_004175814.1| - 5.1e-09 36.6 0.0 7.8e-09 36.1 0.0 1.3 1 1 0 1 1 1 1 ThiS family TrkA_C PF02080.21 gi|320100222|ref|YP_004175814.1| - 0.011 15.6 0.1 0.26 11.1 0.1 2.2 1 1 0 1 1 1 0 TrkA-C domain S4 PF01479.25 gi|320100222|ref|YP_004175814.1| - 0.017 14.8 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 S4 domain TGS PF02824.21 gi|320100222|ref|YP_004175814.1| - 0.024 14.7 0.0 0.33 11.0 0.0 2.1 2 0 0 2 2 2 0 TGS domain FHA PF00498.26 gi|320100222|ref|YP_004175814.1| - 0.026 14.9 0.0 0.049 14.0 0.0 1.5 1 0 0 1 1 1 0 FHA domain Glutaredoxin PF00462.24 gi|320100222|ref|YP_004175814.1| - 0.058 13.6 0.0 0.076 13.2 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin Ub-Mut7C PF14451.6 gi|320100222|ref|YP_004175814.1| - 0.079 12.8 0.0 1.8 8.5 0.0 2.1 2 0 0 2 2 2 0 Mut7-C ubiquitin Ub-RnfH PF03658.14 gi|320100222|ref|YP_004175814.1| - 0.08 13.3 0.0 0.34 11.3 0.0 1.9 1 1 0 1 1 1 0 RnfH family Ubiquitin ThiS PF02597.20 gi|320100223|ref|YP_004175815.1| - 2.1e-05 25.1 1.7 2.2e-05 25.0 1.7 1.1 1 0 0 1 1 1 1 ThiS family DUF4350 PF14258.6 gi|320100223|ref|YP_004175815.1| - 0.049 14.1 0.2 0.06 13.8 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) DUF2148 PF09918.9 gi|320100224|ref|YP_004175816.1| - 1.2e-28 98.9 0.4 1.2e-28 98.9 0.4 2.1 2 1 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) PNP_UDP_1 PF01048.20 gi|320100225|ref|YP_004175817.1| - 2.5e-37 128.4 0.4 3e-37 128.1 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily FliMN_C PF01052.20 gi|320100225|ref|YP_004175817.1| - 0.088 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Type III flagellar switch regulator (C-ring) FliN C-term BPD_transp_2 PF02653.16 gi|320100226|ref|YP_004175818.1| - 5.5e-35 120.8 32.2 6.9e-35 120.5 32.2 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|320100227|ref|YP_004175819.1| - 3.5e-34 118.2 35.8 3.5e-34 118.2 35.8 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component FUSC-like PF12805.7 gi|320100227|ref|YP_004175819.1| - 0.64 9.0 9.1 1.3 8.0 9.1 1.4 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS YGGT PF02325.17 gi|320100227|ref|YP_004175819.1| - 0.77 10.2 5.3 0.4 11.1 2.3 2.1 2 0 0 2 2 2 0 YGGT family ABC_tran PF00005.27 gi|320100228|ref|YP_004175820.1| - 4.5e-51 173.0 0.0 4.1e-29 101.8 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|320100228|ref|YP_004175820.1| - 2.1e-09 37.6 0.7 0.00057 19.8 0.2 2.6 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|320100228|ref|YP_004175820.1| - 0.0051 17.1 2.0 0.03 14.6 0.5 2.7 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|320100228|ref|YP_004175820.1| - 0.0066 15.7 0.0 4.5 6.5 0.0 2.9 3 0 0 3 3 3 2 Zeta toxin AAA_23 PF13476.6 gi|320100228|ref|YP_004175820.1| - 0.012 16.1 0.0 0.024 15.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|320100228|ref|YP_004175820.1| - 0.019 14.7 0.0 0.15 11.8 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|320100228|ref|YP_004175820.1| - 0.031 14.0 0.1 0.18 11.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|320100228|ref|YP_004175820.1| - 0.034 14.0 0.0 0.25 11.2 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|320100228|ref|YP_004175820.1| - 0.054 13.9 0.1 0.94 9.8 0.0 2.5 2 2 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|320100228|ref|YP_004175820.1| - 0.14 12.6 1.2 1.5 9.2 0.3 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|320100228|ref|YP_004175820.1| - 0.17 11.8 0.7 9 6.2 0.0 3.3 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B DUF3584 PF12128.8 gi|320100228|ref|YP_004175820.1| - 0.23 8.9 0.0 0.32 8.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Bmp PF02608.14 gi|320100229|ref|YP_004175821.1| - 2.6e-43 148.2 0.0 3.4e-43 147.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like DUF4330 PF14221.6 gi|320100229|ref|YP_004175821.1| - 0.0032 17.7 1.7 0.013 15.7 1.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4330) ADH_N PF08240.12 gi|320100230|ref|YP_004175822.1| - 3e-31 107.5 0.8 4.4e-31 107.0 0.8 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|320100230|ref|YP_004175822.1| - 1.1e-14 54.5 0.0 1.8e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|320100230|ref|YP_004175822.1| - 1.5e-13 50.7 0.0 3.9e-13 49.4 0.0 1.7 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|320100230|ref|YP_004175822.1| - 0.00031 21.8 0.0 0.00067 20.7 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|320100230|ref|YP_004175822.1| - 0.017 15.2 0.0 0.41 10.7 0.0 2.3 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|320100230|ref|YP_004175822.1| - 0.031 15.1 0.0 0.061 14.2 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NADH_4Fe-4S PF10589.9 gi|320100230|ref|YP_004175822.1| - 0.086 12.9 0.2 0.86 9.7 0.2 2.3 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LacAB_rpiB PF02502.18 gi|320100231|ref|YP_004175823.1| - 1.5e-36 125.4 0.0 1.8e-36 125.2 0.0 1.0 1 0 0 1 1 1 1 Ribose/Galactose Isomerase BD_b_sandwich PF18820.1 gi|320100231|ref|YP_004175823.1| - 0.0084 16.1 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Bdellovibrio Beta-sandwich B12-binding PF02310.19 gi|320100231|ref|YP_004175823.1| - 0.042 13.9 0.1 1.6 8.8 0.0 2.3 1 1 1 2 2 2 0 B12 binding domain Gly_rich_SFCGS PF14272.6 gi|320100231|ref|YP_004175823.1| - 0.048 13.7 0.1 0.063 13.3 0.1 1.2 1 0 0 1 1 1 0 Glycine-rich SFCGS SIS PF01380.22 gi|320100232|ref|YP_004175824.1| - 2.7e-44 150.2 0.1 1.1e-28 99.6 0.3 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|320100232|ref|YP_004175824.1| - 7.2e-21 74.8 0.0 2.8e-20 72.9 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|320100232|ref|YP_004175824.1| - 3.9e-15 55.9 0.0 1e-14 54.5 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|320100232|ref|YP_004175824.1| - 8.5e-06 25.8 0.3 0.00017 21.6 0.0 2.9 2 1 1 3 3 3 1 SIS domain bact-PGI_C PF10432.9 gi|320100232|ref|YP_004175824.1| - 0.0072 16.4 0.0 0.049 13.7 0.0 2.4 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain GATase_4 PF13230.6 gi|320100232|ref|YP_004175824.1| - 0.033 13.1 0.0 0.085 11.7 0.0 1.7 1 0 0 1 1 1 0 Glutamine amidotransferases class-II AA_kinase PF00696.28 gi|320100233|ref|YP_004175825.1| - 4.4e-20 72.3 0.0 9.6e-20 71.2 0.0 1.5 1 1 0 1 1 1 1 Amino acid kinase family NAD_binding_10 PF13460.6 gi|320100233|ref|YP_004175825.1| - 0.1 12.4 0.1 1.1 9.1 0.0 2.2 1 1 1 2 2 2 0 NAD(P)H-binding ANF_receptor PF01094.28 gi|320100233|ref|YP_004175825.1| - 0.17 10.9 0.0 0.26 10.3 0.0 1.3 1 1 0 1 1 1 0 Receptor family ligand binding region adh_short_C2 PF13561.6 gi|320100234|ref|YP_004175826.1| - 1.1e-40 139.6 0.0 1.5e-40 139.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|320100234|ref|YP_004175826.1| - 3.5e-27 95.2 0.0 4.1e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|320100234|ref|YP_004175826.1| - 0.00065 19.7 0.0 0.0013 18.7 0.0 1.5 2 0 0 2 2 2 1 KR domain DUF1776 PF08643.10 gi|320100234|ref|YP_004175826.1| - 0.0022 17.4 0.0 0.0028 17.1 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) OrfB_Zn_ribbon PF07282.11 gi|320100235|ref|YP_004175827.1| - 5.6e-21 74.3 0.2 1.1e-20 73.2 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|320100235|ref|YP_004175827.1| - 0.0057 16.9 1.0 0.012 15.8 1.0 1.5 1 0 0 1 1 1 1 Probable transposase DUF2285 PF10074.9 gi|320100235|ref|YP_004175827.1| - 0.038 14.6 3.7 0.17 12.5 1.5 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2285) Auto_anti-p27 PF06677.12 gi|320100235|ref|YP_004175827.1| - 0.045 13.9 1.3 0.11 12.7 1.3 1.7 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|320100235|ref|YP_004175827.1| - 0.065 13.3 4.9 3 8.0 0.3 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|320100235|ref|YP_004175827.1| - 0.12 12.5 5.4 0.07 13.2 3.2 1.7 2 0 0 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|320100235|ref|YP_004175827.1| - 0.13 11.8 3.1 0.42 10.2 0.5 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|320100235|ref|YP_004175827.1| - 0.21 11.4 3.2 10 6.0 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain DUF678 PF05077.12 gi|320100235|ref|YP_004175827.1| - 0.24 11.5 1.6 0.33 11.1 0.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF678) Zn-ribbon_8 PF09723.10 gi|320100235|ref|YP_004175827.1| - 1.1 9.4 4.1 16 5.8 0.8 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|320100235|ref|YP_004175827.1| - 1.2 9.4 4.7 1.1 9.6 0.9 2.4 2 0 0 2 2 2 0 zinc-ribbon zf-ribbon_3 PF13248.6 gi|320100235|ref|YP_004175827.1| - 1.6 8.2 7.3 3.3 7.2 4.4 2.6 2 1 1 3 3 3 0 zinc-ribbon domain Glyco_hydro_57 PF03065.15 gi|320100236|ref|YP_004175828.1| - 2.2e-08 33.7 0.1 3.7e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 SpoU_methylase PF00588.19 gi|320100237|ref|YP_004175829.1| - 1.5e-30 106.3 0.0 2e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|320100237|ref|YP_004175829.1| - 4.3e-08 33.2 0.0 1.9e-06 27.9 0.0 2.4 2 1 0 2 2 2 1 SAM-dependent RNA methyltransferase UDPG_MGDP_dh_C PF03720.15 gi|320100237|ref|YP_004175829.1| - 0.086 13.3 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MTS PF05175.14 gi|320100238|ref|YP_004175830.1| - 3.4e-15 56.0 0.0 1.5e-14 53.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|320100238|ref|YP_004175830.1| - 1.3e-11 44.4 0.2 3.8e-11 42.9 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|320100238|ref|YP_004175830.1| - 2.2e-05 24.2 0.0 9.1e-05 22.2 0.0 1.8 1 1 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|320100238|ref|YP_004175830.1| - 0.00013 22.6 0.1 0.0011 19.6 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|320100238|ref|YP_004175830.1| - 0.00025 21.0 0.0 0.00067 19.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|320100238|ref|YP_004175830.1| - 0.00044 20.9 0.1 0.0013 19.4 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|320100238|ref|YP_004175830.1| - 0.0017 19.0 0.1 0.0075 16.9 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|320100238|ref|YP_004175830.1| - 0.0021 17.9 0.0 0.0043 16.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|320100238|ref|YP_004175830.1| - 0.0075 16.1 0.2 0.12 12.2 0.2 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|320100238|ref|YP_004175830.1| - 0.04 14.9 0.0 0.069 14.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|320100238|ref|YP_004175830.1| - 0.043 13.5 0.0 0.14 11.8 0.0 1.8 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_8 PF05148.15 gi|320100238|ref|YP_004175830.1| - 0.069 13.0 0.1 2.3 8.0 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase TehB PF03848.14 gi|320100238|ref|YP_004175830.1| - 0.17 11.3 0.0 0.33 10.3 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB RrnaAD PF00398.20 gi|320100239|ref|YP_004175831.1| - 8.1e-30 103.8 0.0 9.4e-30 103.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|320100239|ref|YP_004175831.1| - 5.2e-05 22.9 0.0 9.3e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|320100239|ref|YP_004175831.1| - 0.00019 22.0 0.0 0.00043 20.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|320100239|ref|YP_004175831.1| - 0.0029 16.7 0.0 0.0044 16.1 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_11 PF08241.12 gi|320100239|ref|YP_004175831.1| - 0.0076 16.9 0.0 0.027 15.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|320100239|ref|YP_004175831.1| - 0.011 15.2 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase NodS PF05401.11 gi|320100239|ref|YP_004175831.1| - 0.023 14.3 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) TPR_16 PF13432.6 gi|320100239|ref|YP_004175831.1| - 0.059 14.0 1.4 0.35 11.6 0.1 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF655 PF04919.12 gi|320100240|ref|YP_004175832.1| - 6e-61 205.5 0.2 7e-61 205.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|320100240|ref|YP_004175832.1| - 0.00047 20.3 0.1 0.0011 19.2 0.1 1.5 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|320100240|ref|YP_004175832.1| - 0.089 13.1 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|320100241|ref|YP_004175833.1| - 8.7e-14 51.9 1.3 1.7e-13 51.0 1.3 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb4 ADSL_C PF10397.9 gi|320100241|ref|YP_004175833.1| - 0.0011 19.5 0.1 0.0017 18.8 0.1 1.3 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus Type2_restr_D3 PF16902.5 gi|320100241|ref|YP_004175833.1| - 0.013 15.4 0.5 0.41 10.6 0.0 2.5 2 1 1 3 3 3 0 Type-2 restriction enzyme D3 domain PRESAN PF09687.10 gi|320100241|ref|YP_004175833.1| - 0.047 14.2 0.0 0.09 13.3 0.0 1.5 1 1 0 1 1 1 0 Plasmodium RESA N-terminal PMBR PF09373.10 gi|320100241|ref|YP_004175833.1| - 0.079 13.2 0.0 0.39 10.9 0.0 2.2 1 1 0 1 1 1 0 Pseudomurein-binding repeat Pex14_N PF04695.13 gi|320100241|ref|YP_004175833.1| - 0.1 13.2 0.6 0.28 11.8 0.1 1.8 1 1 1 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Ribosomal_L21e PF01157.18 gi|320100242|ref|YP_004175834.1| - 4.6e-38 129.1 4.3 5.5e-38 128.9 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|320100243|ref|YP_004175835.1| - 8.1e-10 39.0 0.4 9.4e-08 32.3 0.1 2.3 2 0 0 2 2 2 2 THUMP domain SRP54 PF00448.22 gi|320100244|ref|YP_004175836.1| - 1.1e-76 256.8 0.0 1.5e-76 256.4 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|320100244|ref|YP_004175836.1| - 3.7e-29 101.2 0.9 9.1e-29 100.0 0.3 1.9 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|320100244|ref|YP_004175836.1| - 6.2e-14 52.0 4.1 4.1e-13 49.4 0.0 3.4 3 1 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|320100244|ref|YP_004175836.1| - 9e-06 25.8 0.0 3e-05 24.1 0.0 2.0 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|320100244|ref|YP_004175836.1| - 0.00016 21.4 0.2 0.00046 20.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|320100244|ref|YP_004175836.1| - 0.00019 21.7 0.0 0.00066 20.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|320100244|ref|YP_004175836.1| - 0.00029 20.5 1.9 0.0094 15.6 1.9 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|320100244|ref|YP_004175836.1| - 0.00064 19.1 0.0 0.0012 18.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin MMR_HSR1 PF01926.23 gi|320100244|ref|YP_004175836.1| - 0.00069 19.7 0.0 0.0023 18.0 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|320100244|ref|YP_004175836.1| - 0.0022 18.2 0.0 0.0051 17.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|320100244|ref|YP_004175836.1| - 0.004 16.2 0.1 0.017 14.1 0.1 2.0 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ParA PF10609.9 gi|320100244|ref|YP_004175836.1| - 0.012 15.0 0.0 0.024 14.1 0.0 1.4 1 1 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase MobB PF03205.14 gi|320100244|ref|YP_004175836.1| - 0.014 15.3 0.1 0.03 14.2 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.6 gi|320100244|ref|YP_004175836.1| - 0.014 15.8 3.0 0.023 15.1 0.6 2.6 2 1 0 2 2 2 0 AAA domain 6PF2K PF01591.18 gi|320100244|ref|YP_004175836.1| - 0.017 14.4 0.0 0.032 13.5 0.0 1.6 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_24 PF13479.6 gi|320100244|ref|YP_004175836.1| - 0.027 14.2 0.0 0.089 12.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|320100244|ref|YP_004175836.1| - 0.027 14.2 0.3 3.9 7.2 0.1 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.6 gi|320100244|ref|YP_004175836.1| - 0.033 13.8 1.6 0.89 9.1 1.6 2.9 2 1 1 3 3 3 0 AAA domain AAA_31 PF13614.6 gi|320100244|ref|YP_004175836.1| - 0.054 13.4 0.1 0.16 11.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|320100244|ref|YP_004175836.1| - 0.06 13.9 0.6 0.37 11.3 0.6 2.4 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|320100244|ref|YP_004175836.1| - 0.076 12.4 0.2 11 5.4 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit APS_kinase PF01583.20 gi|320100244|ref|YP_004175836.1| - 0.097 12.6 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase MipZ PF09140.11 gi|320100244|ref|YP_004175836.1| - 0.1 11.8 0.3 4.6 6.4 0.0 2.6 3 0 0 3 3 3 0 ATPase MipZ ATP_bind_1 PF03029.17 gi|320100244|ref|YP_004175836.1| - 0.17 11.7 0.0 0.47 10.2 0.0 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Ribosomal_L16 PF00252.18 gi|320100245|ref|YP_004175837.1| - 1.2e-37 128.9 0.1 1.3e-37 128.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Diphthamide_syn PF01866.17 gi|320100246|ref|YP_004175838.1| - 6e-60 203.2 0.0 7.1e-60 203.0 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein PrmA PF06325.13 gi|320100247|ref|YP_004175839.1| - 9.1e-06 25.3 0.5 1.3e-05 24.7 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|320100247|ref|YP_004175839.1| - 0.00012 21.7 0.1 0.00025 20.6 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|320100247|ref|YP_004175839.1| - 0.0015 19.2 0.0 0.0028 18.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|320100247|ref|YP_004175839.1| - 0.017 14.9 0.7 0.029 14.2 0.7 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF43 PF01861.16 gi|320100247|ref|YP_004175839.1| - 0.025 13.8 0.0 0.04 13.2 0.0 1.3 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain DUF5440 PF17509.2 gi|320100247|ref|YP_004175839.1| - 0.036 13.7 0.0 0.2 11.3 0.0 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5440) Cons_hypoth95 PF03602.15 gi|320100247|ref|YP_004175839.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.6 1 1 0 1 1 1 0 Conserved hypothetical protein 95 ECR1_N PF14382.6 gi|320100248|ref|YP_004175840.1| - 0.00018 21.2 0.0 0.00099 18.9 0.0 2.3 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.23 gi|320100248|ref|YP_004175840.1| - 0.0008 19.7 0.5 0.003 17.9 0.2 2.1 1 1 0 1 1 1 1 S1 RNA binding domain Prok-RING_1 PF14446.6 gi|320100248|ref|YP_004175840.1| - 0.0033 17.3 0.3 0.006 16.5 0.3 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 EXOSC1 PF10447.9 gi|320100248|ref|YP_004175840.1| - 0.004 17.7 0.1 0.059 14.0 0.1 2.2 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 DUF2318 PF10080.9 gi|320100248|ref|YP_004175840.1| - 0.021 14.9 0.1 0.041 14.0 0.1 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) RNA_POL_M_15KD PF02150.16 gi|320100248|ref|YP_004175840.1| - 0.06 13.2 0.8 0.1 12.5 0.8 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|320100248|ref|YP_004175840.1| - 0.16 11.9 0.7 0.29 11.1 0.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2067 PF09840.9 gi|320100249|ref|YP_004175841.1| - 4e-45 153.7 0.0 4.4e-45 153.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) RNA_pol_L_2 PF13656.6 gi|320100250|ref|YP_004175842.1| - 1.3e-18 66.5 0.0 1.6e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|320100250|ref|YP_004175842.1| - 0.019 14.4 0.0 0.031 13.7 0.0 1.4 1 1 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.18 gi|320100252|ref|YP_004175844.1| - 3.7e-21 74.7 13.8 1.3e-20 72.9 4.7 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|320100252|ref|YP_004175844.1| - 4.9e-07 29.6 8.8 0.0015 18.5 1.5 2.5 2 0 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|320100252|ref|YP_004175844.1| - 2.2e-06 27.5 6.3 0.017 15.0 0.1 2.8 2 1 1 3 3 3 2 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.16 gi|320100252|ref|YP_004175844.1| - 2.8e-06 27.1 3.7 8.8e-05 22.3 0.2 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|320100252|ref|YP_004175844.1| - 9.4e-05 22.3 10.0 0.085 12.8 0.8 4.1 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|320100252|ref|YP_004175844.1| - 0.0001 21.9 13.1 2 8.2 0.1 4.2 4 0 0 4 4 4 2 zinc-ribbon domain DZR PF12773.7 gi|320100252|ref|YP_004175844.1| - 0.00046 20.1 6.7 0.0027 17.7 1.7 2.9 1 1 0 2 2 2 1 Double zinc ribbon DUF2387 PF09526.10 gi|320100252|ref|YP_004175844.1| - 0.0005 20.2 4.3 0.15 12.2 0.1 2.4 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.6 gi|320100252|ref|YP_004175844.1| - 0.00058 19.2 12.4 0.12 11.8 0.2 4.1 4 0 0 4 4 4 2 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|320100252|ref|YP_004175844.1| - 0.00062 19.6 10.8 0.012 15.6 2.1 3.4 3 0 0 3 3 3 1 Nudix N-terminal YhfH PF14149.6 gi|320100252|ref|YP_004175844.1| - 0.00072 19.5 1.8 32 4.6 0.0 4.2 4 0 0 4 4 4 0 YhfH-like protein IBR PF01485.21 gi|320100252|ref|YP_004175844.1| - 0.0025 18.0 7.3 0.11 12.8 0.2 3.0 2 1 1 3 3 3 1 IBR domain, a half RING-finger domain zf-ZPR1 PF03367.13 gi|320100252|ref|YP_004175844.1| - 0.0033 17.3 1.2 1.6 8.5 0.1 2.7 3 0 0 3 3 3 1 ZPR1 zinc-finger domain zf-TFIIB PF13453.6 gi|320100252|ref|YP_004175844.1| - 0.0085 15.4 9.8 0.039 13.3 1.8 3.1 3 0 0 3 3 3 1 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|320100252|ref|YP_004175844.1| - 0.012 15.7 14.7 7.5 6.8 0.3 4.3 3 1 0 3 3 3 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|320100252|ref|YP_004175844.1| - 0.018 14.8 10.8 0.023 14.5 0.8 2.8 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.12 gi|320100252|ref|YP_004175844.1| - 0.02 14.4 14.7 0.61 9.7 2.4 4.1 2 2 1 3 3 3 0 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|320100252|ref|YP_004175844.1| - 0.024 14.3 6.2 0.033 13.9 0.5 3.0 3 1 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Lar_restr_allev PF14354.6 gi|320100252|ref|YP_004175844.1| - 0.055 13.8 8.3 0.52 10.7 0.5 2.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-IS66 PF13005.7 gi|320100252|ref|YP_004175844.1| - 0.057 13.8 9.9 0.62 10.5 0.2 4.1 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf_UBZ PF18439.1 gi|320100252|ref|YP_004175844.1| - 0.058 13.0 10.3 16 5.2 0.2 4.6 5 0 0 5 5 5 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 gi|320100252|ref|YP_004175844.1| - 0.11 13.3 8.0 0.21 12.4 2.4 3.1 1 1 0 2 2 2 0 zinc-ribbon family Rdx PF10262.9 gi|320100252|ref|YP_004175844.1| - 0.13 12.5 3.8 3.2 8.0 0.1 2.9 3 0 0 3 3 3 0 Rdx family HypA PF01155.19 gi|320100252|ref|YP_004175844.1| - 0.13 12.3 7.1 1.3 9.1 2.3 2.9 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FdhE PF04216.12 gi|320100252|ref|YP_004175844.1| - 0.15 11.9 6.5 0.14 12.0 0.6 2.1 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation DNA_RNApol_7kD PF03604.13 gi|320100252|ref|YP_004175844.1| - 0.22 11.2 11.0 15 5.4 3.6 3.6 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2HE PF16278.5 gi|320100252|ref|YP_004175844.1| - 0.24 11.9 1.6 39 4.8 0.1 3.2 3 0 0 3 3 3 0 C2HE / C2H2 / C2HC zinc-binding finger eIF-5_eIF-2B PF01873.17 gi|320100252|ref|YP_004175844.1| - 0.27 11.1 2.1 3 7.8 0.1 2.3 2 0 0 2 2 2 0 Domain found in IF2B/IF5 Zn_ribbon_recom PF13408.6 gi|320100252|ref|YP_004175844.1| - 0.57 10.7 8.8 3.2 8.3 2.3 3.4 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|320100252|ref|YP_004175844.1| - 0.68 9.9 6.4 23 5.1 0.9 3.6 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Zn_Tnp_IS91 PF14319.6 gi|320100252|ref|YP_004175844.1| - 0.8 9.8 9.6 5.2 7.2 0.2 3.6 2 2 2 4 4 4 0 Transposase zinc-binding domain zinc_ribbon_13 PF09855.9 gi|320100252|ref|YP_004175844.1| - 0.9 9.8 13.4 3.6 7.8 0.1 4.0 3 1 1 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_L32p PF01783.23 gi|320100252|ref|YP_004175844.1| - 0.95 9.8 7.3 16 5.8 1.9 3.7 3 1 0 3 3 3 0 Ribosomal L32p protein family zf-ACC PF17848.1 gi|320100252|ref|YP_004175844.1| - 1.6 8.9 16.1 4.3 7.5 0.2 4.4 5 0 0 5 5 5 0 Acetyl-coA carboxylase zinc finger domain Baculo_LEF5_C PF11792.8 gi|320100252|ref|YP_004175844.1| - 2.4 7.9 0.0 2.4 7.9 0.0 3.5 3 1 1 4 4 4 0 Baculoviridae late expression factor 5 C-terminal domain zf-HYPF PF07503.12 gi|320100252|ref|YP_004175844.1| - 2.4 8.0 12.2 23 4.9 0.1 4.1 4 0 0 4 4 4 0 HypF finger HalOD2 PF18547.1 gi|320100252|ref|YP_004175844.1| - 2.6 8.0 10.6 2 8.4 0.5 3.4 4 0 0 4 4 4 0 Halobacterial output domain 2 DUF4379 PF14311.6 gi|320100252|ref|YP_004175844.1| - 4 7.9 10.6 1.6 9.2 0.8 3.6 4 0 0 4 4 4 0 Probable Zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|320100252|ref|YP_004175844.1| - 4.2 7.2 11.2 21 5.0 0.1 4.0 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-tcix PF14952.6 gi|320100252|ref|YP_004175844.1| - 5.3 6.7 13.5 18 5.1 0.5 4.0 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding zf_C2H2_10 PF18414.1 gi|320100252|ref|YP_004175844.1| - 5.7 6.6 11.3 6.3 6.4 0.2 3.6 4 0 0 4 4 4 0 C2H2 type zinc-finger zf_Rg PF17915.1 gi|320100252|ref|YP_004175844.1| - 7 6.1 13.0 0.13 11.6 3.2 2.6 3 0 0 3 3 2 0 Reverse gyrase zinc finger Ogr_Delta PF04606.12 gi|320100252|ref|YP_004175844.1| - 8.5 6.4 12.0 45 4.1 0.1 3.8 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger ADK_lid PF05191.14 gi|320100252|ref|YP_004175844.1| - 8.7 6.4 11.6 26 4.9 0.1 3.7 3 1 0 3 3 3 0 Adenylate kinase, active site lid Mu-like_Com PF10122.9 gi|320100252|ref|YP_004175844.1| - 9.5 5.8 11.7 38 3.8 0.1 4.0 4 0 0 4 4 4 0 Mu-like prophage protein Com PCNA_N PF00705.18 gi|320100253|ref|YP_004175845.1| - 2.5e-14 53.1 0.0 4.2e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|320100253|ref|YP_004175845.1| - 4.9e-06 26.7 0.0 8.1e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|320100253|ref|YP_004175845.1| - 0.0023 17.1 0.0 0.005 16.0 0.0 1.4 1 1 0 1 1 1 1 Repair protein Rad1/Rec1/Rad17 Chalcone_2 PF16035.5 gi|320100253|ref|YP_004175845.1| - 0.081 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Chalcone isomerase like DUF3117 PF11314.8 gi|320100253|ref|YP_004175845.1| - 0.45 10.4 4.0 16 5.4 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF3117) DNA_primase_S PF01896.19 gi|320100254|ref|YP_004175846.1| - 1.4e-13 51.3 0.3 2.6e-11 43.9 0.0 2.5 2 1 0 2 2 2 2 DNA primase small subunit Nucleo_LEF-12 PF06256.11 gi|320100256|ref|YP_004175848.1| - 0.022 14.5 0.1 0.033 14.0 0.1 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus LEF-12 protein DUF515 PF04415.12 gi|320100256|ref|YP_004175848.1| - 0.067 11.6 0.5 0.09 11.2 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) MscS_TM PF12794.7 gi|320100256|ref|YP_004175848.1| - 0.35 9.7 8.1 0.46 9.3 8.1 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 Nop10p PF04135.12 gi|320100257|ref|YP_004175849.1| - 1.8e-21 75.9 1.0 2.2e-21 75.6 1.0 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-FPG_IleRS PF06827.14 gi|320100257|ref|YP_004175849.1| - 0.00056 19.7 4.5 0.12 12.2 0.9 2.3 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.6 gi|320100257|ref|YP_004175849.1| - 0.003 16.9 2.8 0.0053 16.1 2.8 1.4 1 1 0 1 1 1 1 zinc-ribbon domain DUF1272 PF06906.11 gi|320100257|ref|YP_004175849.1| - 0.0047 17.0 1.8 0.0062 16.6 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Fer4 PF00037.27 gi|320100257|ref|YP_004175849.1| - 0.022 14.6 2.0 2.8 7.9 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Med16 PF11635.8 gi|320100257|ref|YP_004175849.1| - 0.057 11.3 0.7 0.068 11.1 0.7 1.2 1 0 0 1 1 1 0 Mediator complex subunit 16 Ribosomal_L37e PF01907.19 gi|320100257|ref|YP_004175849.1| - 0.063 13.5 1.0 0.1 12.7 1.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e RecR PF02132.15 gi|320100257|ref|YP_004175849.1| - 0.12 12.0 0.6 0.12 12.0 0.6 1.5 2 0 0 2 2 2 0 RecR protein DUF35_N PF12172.8 gi|320100257|ref|YP_004175849.1| - 0.13 12.2 3.3 0.23 11.4 3.3 1.5 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|320100257|ref|YP_004175849.1| - 0.16 11.5 4.4 2.1 8.0 0.4 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|320100257|ref|YP_004175849.1| - 0.17 12.0 3.7 5.3 7.2 0.3 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HypA PF01155.19 gi|320100257|ref|YP_004175849.1| - 0.18 11.9 0.6 0.23 11.5 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|320100257|ref|YP_004175849.1| - 0.42 10.8 4.3 4.6 7.5 4.3 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-tcix PF14952.6 gi|320100257|ref|YP_004175849.1| - 0.46 10.1 5.9 4.2 7.1 0.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Fer4_2 PF12797.7 gi|320100257|ref|YP_004175849.1| - 0.67 10.2 5.5 1.2e+02 3.1 5.5 2.3 1 1 0 1 1 1 0 4Fe-4S binding domain Mu-like_Com PF10122.9 gi|320100257|ref|YP_004175849.1| - 0.68 9.4 8.0 26 4.3 8.1 2.2 1 1 0 1 1 1 0 Mu-like prophage protein Com EIF_2_alpha PF07541.12 gi|320100258|ref|YP_004175850.1| - 5.9e-22 77.9 0.6 4.4e-21 75.2 0.0 2.2 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|320100258|ref|YP_004175850.1| - 7.6e-13 48.6 0.5 1.4e-12 47.8 0.5 1.4 1 0 0 1 1 1 1 S1 RNA binding domain PMT_2 PF13231.6 gi|320100259|ref|YP_004175851.1| - 0.22 11.7 23.8 0.031 14.5 10.0 3.3 2 0 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase EamA PF00892.20 gi|320100260|ref|YP_004175852.1| - 2.2e-33 115.3 32.4 8.4e-19 68.1 9.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|320100260|ref|YP_004175852.1| - 0.29 11.2 8.3 6.9 6.7 0.4 3.2 2 2 0 2 2 2 0 Putative transmembrane family 234 Oxidored_q6 PF01058.22 gi|320100262|ref|YP_004175854.1| - 3e-21 75.6 0.0 3.7e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|320100263|ref|YP_004175855.1| - 1.8e-14 52.8 24.0 1.6e-09 37.2 4.6 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|320100263|ref|YP_004175855.1| - 2.1e-12 47.4 11.5 1.1e-06 29.1 0.1 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|320100263|ref|YP_004175855.1| - 8.8e-12 45.0 7.2 8.8e-12 45.0 7.2 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|320100263|ref|YP_004175855.1| - 4.2e-10 39.6 8.6 4.2e-10 39.6 8.6 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|320100263|ref|YP_004175855.1| - 8.4e-10 38.3 23.6 2.3e-08 33.8 4.2 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|320100263|ref|YP_004175855.1| - 1.7e-09 37.7 7.7 1.7e-09 37.7 7.7 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|320100263|ref|YP_004175855.1| - 1e-08 35.9 14.9 0.00076 20.4 6.5 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|320100263|ref|YP_004175855.1| - 1.9e-06 27.6 3.3 1.9e-06 27.6 3.3 4.2 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|320100263|ref|YP_004175855.1| - 3.3e-06 27.5 15.5 0.0022 18.4 9.7 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|320100263|ref|YP_004175855.1| - 4.1e-05 23.7 1.5 4.1e-05 23.7 1.5 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|320100263|ref|YP_004175855.1| - 0.0003 21.6 8.2 0.016 16.0 0.2 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|320100263|ref|YP_004175855.1| - 0.00074 20.2 0.5 0.00074 20.2 0.5 2.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|320100263|ref|YP_004175855.1| - 0.0015 19.3 7.9 0.0015 19.3 7.9 3.1 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|320100263|ref|YP_004175855.1| - 0.0032 18.0 17.5 0.021 15.4 2.4 3.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|320100263|ref|YP_004175855.1| - 0.011 16.3 4.1 0.011 16.3 4.1 3.3 3 1 1 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I zf-tcix PF14952.6 gi|320100263|ref|YP_004175855.1| - 0.048 13.3 0.2 0.048 13.3 0.2 3.2 3 0 0 3 3 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-Di19 PF05605.12 gi|320100263|ref|YP_004175855.1| - 0.087 13.1 1.7 0.19 12.0 0.3 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Fer4_18 PF13746.6 gi|320100263|ref|YP_004175855.1| - 0.15 12.2 14.3 0.82 9.9 1.1 2.7 1 1 0 2 2 2 0 4Fe-4S dicluster domain HypA PF01155.19 gi|320100263|ref|YP_004175855.1| - 0.66 10.0 7.0 1.6 8.8 7.0 1.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Complex1_49kDa PF00346.19 gi|320100264|ref|YP_004175856.1| - 3.4e-63 213.3 0.2 3.1e-47 160.9 0.2 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|320100264|ref|YP_004175856.1| - 1.2e-21 77.5 0.0 7.3e-21 75.0 0.0 2.1 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|320100264|ref|YP_004175856.1| - 2.1e-16 59.9 3.3 6.8e-13 48.3 0.1 3.3 2 2 1 3 3 3 2 Nickel-dependent hydrogenase NADHdh PF00146.21 gi|320100265|ref|YP_004175857.1| - 9.2e-30 104.0 23.3 1.2e-29 103.6 23.3 1.1 1 0 0 1 1 1 1 NADH dehydrogenase DUF1003 PF06210.11 gi|320100265|ref|YP_004175857.1| - 1.7 8.8 5.0 8.3 6.6 0.7 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1003) Proton_antipo_M PF00361.20 gi|320100267|ref|YP_004175859.1| - 1.8e-37 129.2 26.4 1.8e-37 129.2 26.4 2.0 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|320100268|ref|YP_004175860.1| - 6e-29 101.2 22.0 9e-29 100.6 20.7 2.1 1 1 0 1 1 1 1 Proton-conducting membrane transporter Fer4_11 PF13247.6 gi|320100269|ref|YP_004175861.1| - 1.9e-21 76.0 9.8 1.9e-21 76.0 9.8 1.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|320100269|ref|YP_004175861.1| - 2.4e-13 50.0 45.2 3e-06 27.3 11.1 3.0 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|320100269|ref|YP_004175861.1| - 1.1e-12 47.2 37.2 1.1e-05 25.1 3.5 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|320100269|ref|YP_004175861.1| - 1.1e-11 44.3 38.9 2.9e-05 23.9 2.8 4.9 4 2 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|320100269|ref|YP_004175861.1| - 2.2e-11 44.2 51.5 7.2e-06 26.5 13.1 3.9 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|320100269|ref|YP_004175861.1| - 7.3e-10 38.8 29.0 4.9e-06 26.6 12.2 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|320100269|ref|YP_004175861.1| - 1.3e-08 35.2 37.3 0.0039 18.0 3.6 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|320100269|ref|YP_004175861.1| - 4.7e-08 32.7 33.7 0.00037 20.4 1.9 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|320100269|ref|YP_004175861.1| - 3.2e-07 30.3 36.2 0.00078 19.8 2.3 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|320100269|ref|YP_004175861.1| - 3.8e-07 31.0 28.3 0.013 16.5 1.7 4.8 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|320100269|ref|YP_004175861.1| - 1.8e-05 25.2 23.9 0.011 16.2 1.2 4.4 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|320100269|ref|YP_004175861.1| - 2.1e-05 24.6 29.7 0.0029 17.7 11.8 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|320100269|ref|YP_004175861.1| - 3.9e-05 24.0 27.7 0.038 14.5 10.1 4.1 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|320100269|ref|YP_004175861.1| - 0.0018 18.9 16.4 0.073 13.8 4.8 3.2 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|320100269|ref|YP_004175861.1| - 0.07 13.7 0.8 0.07 13.7 0.8 4.3 4 2 1 5 5 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|320100269|ref|YP_004175861.1| - 0.41 10.9 24.0 0.11 12.7 2.5 3.7 1 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|320100269|ref|YP_004175861.1| - 1.8 9.4 22.0 0.81 10.6 1.1 4.0 3 1 1 4 4 4 0 4Fe-4S dicluster domain Pyr_redox_2 PF07992.14 gi|320100270|ref|YP_004175862.1| - 3.2e-34 118.5 0.0 4.1e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|320100270|ref|YP_004175862.1| - 9.5e-12 45.3 1.1 2.8e-06 27.8 0.1 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|320100270|ref|YP_004175862.1| - 4.2e-11 42.6 1.0 2.3e-07 30.4 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|320100270|ref|YP_004175862.1| - 2.4e-09 37.1 2.0 0.0006 19.3 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|320100270|ref|YP_004175862.1| - 2.9e-09 37.0 2.9 3.6e-08 33.5 0.2 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|320100270|ref|YP_004175862.1| - 3.8e-08 32.8 0.5 0.0015 17.7 0.0 3.2 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|320100270|ref|YP_004175862.1| - 2.1e-06 26.7 2.1 9.3e-05 21.3 0.2 2.6 3 0 0 3 3 3 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|320100270|ref|YP_004175862.1| - 4.8e-06 26.0 0.4 0.026 13.8 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|320100270|ref|YP_004175862.1| - 9.1e-06 25.0 2.5 0.017 14.3 0.3 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 gi|320100270|ref|YP_004175862.1| - 3.9e-05 23.4 6.5 0.014 15.0 0.3 3.2 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|320100270|ref|YP_004175862.1| - 0.00013 21.4 0.5 0.00053 19.3 0.1 2.1 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.17 gi|320100270|ref|YP_004175862.1| - 0.0021 17.3 0.5 0.014 14.7 0.1 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 gi|320100270|ref|YP_004175862.1| - 0.0029 18.0 0.1 0.12 12.9 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|320100270|ref|YP_004175862.1| - 0.0031 17.6 0.1 0.87 9.7 0.0 2.8 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase Amino_oxidase PF01593.24 gi|320100270|ref|YP_004175862.1| - 0.0048 16.2 0.0 0.66 9.2 0.0 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|320100270|ref|YP_004175862.1| - 0.011 15.7 0.5 0.071 13.0 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|320100270|ref|YP_004175862.1| - 0.011 15.8 1.1 0.79 9.7 0.1 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|320100270|ref|YP_004175862.1| - 0.024 13.8 0.3 0.26 10.4 0.0 2.5 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) FMO-like PF00743.19 gi|320100270|ref|YP_004175862.1| - 0.033 12.6 0.0 0.37 9.2 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like Hydrolase_3 PF08282.12 gi|320100271|ref|YP_004175863.1| - 6.1e-20 72.0 0.0 5.6e-11 42.7 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|320100271|ref|YP_004175863.1| - 0.00035 20.2 0.0 0.003 17.1 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|320100271|ref|YP_004175863.1| - 0.0015 18.9 0.8 0.92 9.7 0.2 2.4 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|320100271|ref|YP_004175863.1| - 0.061 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|320100271|ref|YP_004175863.1| - 0.078 12.1 0.0 3.8 6.6 0.0 2.1 2 0 0 2 2 2 0 Trehalose-phosphatase PHA_gran_rgn PF09650.10 gi|320100271|ref|YP_004175863.1| - 0.09 13.1 0.2 2.1 8.7 0.0 2.3 2 0 0 2 2 2 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) HAD PF12710.7 gi|320100271|ref|YP_004175863.1| - 0.26 11.7 9.0 4.7 7.6 0.0 3.8 1 1 2 3 3 3 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|320100272|ref|YP_004175864.1| - 3.8e-37 128.1 0.0 4.5e-37 127.9 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|320100272|ref|YP_004175864.1| - 2.1e-14 54.4 0.0 2.6e-12 47.5 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|320100272|ref|YP_004175864.1| - 1.8e-11 43.9 0.0 4.9e-11 42.5 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|320100272|ref|YP_004175864.1| - 5.1e-11 43.3 0.0 9.2e-11 42.5 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|320100272|ref|YP_004175864.1| - 0.00043 20.2 0.0 0.04 13.8 0.0 2.6 2 1 0 2 2 2 1 Acid Phosphatase Put_Phosphatase PF06888.12 gi|320100272|ref|YP_004175864.1| - 0.076 12.4 0.6 2.3 7.5 0.2 2.7 2 1 0 2 2 2 0 Putative Phosphatase UbiA PF01040.18 gi|320100273|ref|YP_004175865.1| - 6.3e-33 114.1 7.5 8.4e-33 113.7 7.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family PAP2 PF01569.21 gi|320100273|ref|YP_004175865.1| - 0.16 11.7 4.7 0.14 11.9 0.5 2.6 1 1 2 3 3 3 0 PAP2 superfamily DUF1129 PF06570.11 gi|320100273|ref|YP_004175865.1| - 1.6 8.2 6.3 0.14 11.6 0.4 2.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) PAP2 PF01569.21 gi|320100274|ref|YP_004175866.1| - 1e-15 57.7 4.3 1e-15 57.7 4.3 3.5 3 2 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|320100274|ref|YP_004175866.1| - 7.5e-08 32.3 8.0 2.4e-07 30.7 8.1 1.7 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|320100274|ref|YP_004175866.1| - 0.04 14.5 1.9 0.044 14.3 0.2 1.9 2 0 0 2 2 2 0 PAP2 superfamily C-terminal P5CR_dimer PF14748.6 gi|320100274|ref|YP_004175866.1| - 0.17 12.2 2.5 0.37 11.1 2.3 1.7 1 1 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation Methyltransf_11 PF08241.12 gi|320100275|ref|YP_004175867.1| - 9.8e-15 55.0 0.0 1.5e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|320100275|ref|YP_004175867.1| - 1e-09 38.5 0.0 1.7e-09 37.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|320100275|ref|YP_004175867.1| - 8.3e-08 32.8 0.0 1.4e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|320100275|ref|YP_004175867.1| - 0.001 18.5 0.0 0.0038 16.6 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|320100275|ref|YP_004175867.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|320100275|ref|YP_004175867.1| - 0.027 15.2 0.0 0.081 13.7 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|320100275|ref|YP_004175867.1| - 0.034 13.7 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|320100275|ref|YP_004175867.1| - 0.29 9.6 0.0 0.37 9.3 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Radical_SAM PF04055.21 gi|320100276|ref|YP_004175868.1| - 1.9e-17 64.2 0.0 3.3e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|320100276|ref|YP_004175868.1| - 5.1e-05 23.6 0.0 7.7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|320100276|ref|YP_004175868.1| - 0.014 15.5 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S single cluster domain bact-PGI_C PF10432.9 gi|320100277|ref|YP_004175869.1| - 3.2e-36 124.7 0.0 4.4e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|320100277|ref|YP_004175869.1| - 2.6e-05 24.1 0.0 0.00026 20.8 0.1 2.1 2 0 0 2 2 2 1 SIS domain MarR_2 PF12802.7 gi|320100278|ref|YP_004175870.1| - 0.0064 16.4 0.5 0.012 15.5 0.5 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|320100278|ref|YP_004175870.1| - 0.016 15.0 0.1 0.037 13.8 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain GntR PF00392.21 gi|320100278|ref|YP_004175870.1| - 0.02 14.5 0.8 0.045 13.4 0.8 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|320100278|ref|YP_004175870.1| - 0.025 14.4 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.20 gi|320100278|ref|YP_004175870.1| - 0.036 14.4 0.1 0.072 13.5 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|320100278|ref|YP_004175870.1| - 0.1 12.6 1.1 0.3 11.1 0.3 2.1 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain DUF2258 PF10015.9 gi|320100281|ref|YP_004175873.1| - 6.9e-28 96.6 1.3 1.1e-27 95.9 0.3 1.9 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2258) DHHA1 PF02272.19 gi|320100282|ref|YP_004175874.1| - 4.2e-14 53.1 0.0 7.1e-14 52.4 0.0 1.5 1 1 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|320100282|ref|YP_004175874.1| - 0.00041 20.5 0.0 0.00078 19.6 0.0 1.4 1 0 0 1 1 1 1 DHH family Phage_integrase PF00589.22 gi|320100283|ref|YP_004175875.1| - 6.4e-34 117.2 0.0 1e-33 116.6 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|320100283|ref|YP_004175875.1| - 1.9e-10 41.0 0.0 7.5e-07 29.5 0.0 2.6 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain zinc_ribbon_2 PF13240.6 gi|320100283|ref|YP_004175875.1| - 1.8e-07 30.7 1.4 3.1e-07 29.9 1.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Phage_int_SAM_1 PF02899.17 gi|320100283|ref|YP_004175875.1| - 4.8e-07 30.0 0.1 3.9e-05 23.9 0.0 2.8 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DZR PF12773.7 gi|320100283|ref|YP_004175875.1| - 6.2e-05 22.9 0.4 0.0001 22.3 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|320100283|ref|YP_004175875.1| - 0.00035 19.9 1.1 0.00061 19.1 1.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|320100283|ref|YP_004175875.1| - 0.0006 20.5 0.1 0.001 19.8 0.1 1.3 1 0 0 1 1 1 1 zinc-ribbon family UPF0547 PF10571.9 gi|320100283|ref|YP_004175875.1| - 0.0011 19.0 1.6 0.0018 18.3 1.6 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF35_N PF12172.8 gi|320100283|ref|YP_004175875.1| - 0.014 15.2 2.5 0.032 14.1 2.5 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|320100283|ref|YP_004175875.1| - 0.16 12.0 0.5 0.32 11.0 0.5 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PA PF02225.22 gi|320100285|ref|YP_004175877.1| - 0.011 15.7 0.0 0.071 13.1 0.0 2.1 2 0 0 2 2 2 0 PA domain tRNA-synt_2b PF00587.25 gi|320100286|ref|YP_004175878.1| - 1.4e-29 103.4 0.1 2.8e-29 102.3 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|320100286|ref|YP_004175878.1| - 1.1e-21 76.8 0.2 2.2e-21 75.8 0.2 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|320100286|ref|YP_004175878.1| - 2.2e-05 24.6 0.1 6.9e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal PilA4 PF18682.1 gi|320100287|ref|YP_004175879.1| - 0.14 12.5 0.1 0.21 12.0 0.1 1.2 1 0 0 1 1 1 0 Pilin A4 Diphthami_syn_2 PF01902.17 gi|320100288|ref|YP_004175880.1| - 7.5e-51 172.7 0.0 8.9e-51 172.5 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase ATP-synt_ab PF00006.25 gi|320100289|ref|YP_004175881.1| - 5.2e-64 215.8 0.0 7.5e-64 215.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|320100289|ref|YP_004175881.1| - 0.0058 17.1 0.5 0.012 16.1 0.5 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|320100289|ref|YP_004175881.1| - 0.02 15.0 0.3 0.048 13.8 0.3 1.6 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_ab PF00006.25 gi|320100290|ref|YP_004175882.1| - 7.8e-84 280.6 0.0 1.2e-83 280.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|320100290|ref|YP_004175882.1| - 1e-40 138.4 0.0 1.8e-40 137.6 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|320100290|ref|YP_004175882.1| - 7.9e-17 61.5 2.9 2e-16 60.3 2.9 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain vATP-synt_E PF01991.18 gi|320100293|ref|YP_004175885.1| - 3.6e-16 59.2 16.0 8.9e-16 57.9 16.0 1.6 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|320100293|ref|YP_004175885.1| - 0.00058 20.2 28.4 0.0077 16.6 25.6 2.7 2 1 1 3 3 3 2 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|320100293|ref|YP_004175885.1| - 0.003 17.6 17.8 0.47 10.5 9.6 2.7 1 1 1 2 2 2 2 DivIVA protein SMC_hinge PF06470.13 gi|320100293|ref|YP_004175885.1| - 0.062 13.6 0.7 0.94 9.8 0.0 2.4 1 1 0 2 2 2 0 SMC proteins Flexible Hinge Domain ATP-synt_B PF00430.18 gi|320100293|ref|YP_004175885.1| - 0.071 13.2 25.1 1.2 9.3 15.9 2.3 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|320100293|ref|YP_004175885.1| - 0.071 12.5 21.9 0.41 10.0 12.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) CBFD_NFYB_HMF PF00808.23 gi|320100293|ref|YP_004175885.1| - 0.086 13.1 8.0 8.5 6.7 0.0 3.2 2 1 1 3 3 3 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone UvsY PF11056.8 gi|320100293|ref|YP_004175885.1| - 0.39 11.1 3.5 0.58 10.5 2.2 1.8 2 0 0 2 2 2 0 Recombination, repair and ssDNA binding protein UvsY HrpE PF06188.12 gi|320100293|ref|YP_004175885.1| - 0.42 10.5 10.8 0.82 9.5 10.8 1.6 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF2007 PF09413.10 gi|320100293|ref|YP_004175885.1| - 0.6 10.3 0.1 0.6 10.3 0.1 3.8 3 2 1 4 4 4 0 Putative prokaryotic signal transducing protein ATP-synt_C PF00137.21 gi|320100294|ref|YP_004175886.1| - 1.4e-15 57.4 13.3 3.6e-09 36.8 1.0 2.2 2 0 0 2 2 2 2 ATP synthase subunit C V_ATPase_I PF01496.19 gi|320100295|ref|YP_004175887.1| - 2.3e-22 78.8 4.8 4.8e-11 41.4 3.5 2.8 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family SCO1-SenC PF02630.14 gi|320100295|ref|YP_004175887.1| - 0.11 12.4 0.0 0.28 11.1 0.0 1.6 2 0 0 2 2 2 0 SCO1/SenC ABATE PF07336.11 gi|320100295|ref|YP_004175887.1| - 0.32 11.7 1.0 0.84 10.3 0.1 2.1 2 1 0 2 2 2 0 Putative stress-induced transcription regulator CLZ PF16526.5 gi|320100295|ref|YP_004175887.1| - 1.6 9.2 6.1 7.7 6.9 0.1 3.1 2 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DivIVA PF05103.13 gi|320100296|ref|YP_004175888.1| - 0.0012 18.9 9.1 0.037 14.1 2.2 2.1 2 0 0 2 2 2 2 DivIVA protein HrpE PF06188.12 gi|320100296|ref|YP_004175888.1| - 0.052 13.4 2.9 0.093 12.6 2.7 1.5 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E ERp29 PF07749.12 gi|320100296|ref|YP_004175888.1| - 0.11 13.5 3.2 2.8 8.9 0.4 2.0 2 0 0 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain V-ATPase_G_2 PF16999.5 gi|320100296|ref|YP_004175888.1| - 0.12 12.8 13.9 0.3 11.5 13.9 1.9 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit PRKCSH-like PF12999.7 gi|320100296|ref|YP_004175888.1| - 2.7 7.8 4.4 1.5 8.6 2.0 1.7 1 1 1 2 2 2 0 Glucosidase II beta subunit-like Peptidase_M41 PF01434.18 gi|320100296|ref|YP_004175888.1| - 2.8 7.7 7.6 6.3 6.6 1.1 2.1 1 1 1 2 2 2 0 Peptidase family M41 DUF61 PF01886.16 gi|320100297|ref|YP_004175889.1| - 1.7e-34 118.6 0.0 1.8e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 ATP-synt_D PF01813.17 gi|320100298|ref|YP_004175890.1| - 6.7e-37 127.2 12.1 7.8e-37 127.0 12.1 1.0 1 0 0 1 1 1 1 ATP synthase subunit D CorA PF01544.18 gi|320100298|ref|YP_004175890.1| - 0.017 14.5 2.4 0.022 14.1 0.0 1.9 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein NUDIX PF00293.28 gi|320100300|ref|YP_004175892.1| - 7.3e-17 61.6 0.1 9.7e-17 61.2 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain ABC_tran PF00005.27 gi|320100301|ref|YP_004175893.1| - 4.5e-27 95.2 0.0 6.9e-27 94.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100301|ref|YP_004175893.1| - 1.6e-08 34.8 0.0 0.00049 20.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|320100301|ref|YP_004175893.1| - 3.8e-08 33.9 0.1 2.1e-07 31.6 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) KdpD PF02702.17 gi|320100301|ref|YP_004175893.1| - 5.7e-05 22.7 0.2 0.00025 20.6 0.1 1.9 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain SMC_N PF02463.19 gi|320100301|ref|YP_004175893.1| - 0.0033 16.9 0.2 1.9 7.9 0.0 2.4 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|320100301|ref|YP_004175893.1| - 0.0045 17.4 0.6 0.17 12.3 0.3 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|320100301|ref|YP_004175893.1| - 0.0051 17.3 0.3 0.0092 16.5 0.3 1.3 1 0 0 1 1 1 1 AAA domain NMT1_2 PF13379.6 gi|320100301|ref|YP_004175893.1| - 0.0073 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 NMT1-like family NB-ARC PF00931.22 gi|320100301|ref|YP_004175893.1| - 0.0092 15.2 0.5 0.083 12.1 0.5 2.0 1 1 0 1 1 1 1 NB-ARC domain AAA_30 PF13604.6 gi|320100301|ref|YP_004175893.1| - 0.015 15.0 0.0 0.04 13.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|320100301|ref|YP_004175893.1| - 0.018 14.8 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|320100301|ref|YP_004175893.1| - 0.025 14.2 0.1 0.088 12.4 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|320100301|ref|YP_004175893.1| - 0.044 13.3 0.4 1.7 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|320100301|ref|YP_004175893.1| - 0.098 12.6 0.4 1.3 8.9 0.4 2.1 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea STAS PF01740.21 gi|320100301|ref|YP_004175893.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 STAS domain ABC2_membrane_3 PF12698.7 gi|320100302|ref|YP_004175894.1| - 0.00015 21.0 26.1 0.00019 20.6 26.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|320100302|ref|YP_004175894.1| - 0.00045 19.6 7.4 0.00045 19.6 7.4 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|320100302|ref|YP_004175894.1| - 0.0019 18.2 11.6 0.0019 18.2 11.6 1.7 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|320100303|ref|YP_004175895.1| - 7.6e-19 68.0 16.7 7.6e-19 68.0 16.7 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|320100303|ref|YP_004175895.1| - 2e-05 24.0 13.3 2e-05 24.0 13.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|320100303|ref|YP_004175895.1| - 0.0012 18.0 20.5 0.0017 17.5 20.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|320100303|ref|YP_004175895.1| - 0.34 10.4 12.7 0.98 8.9 12.7 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF998 PF06197.13 gi|320100304|ref|YP_004175896.1| - 2.8e-13 49.9 16.2 3.4e-13 49.6 16.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Deltameth_res PF16020.5 gi|320100304|ref|YP_004175896.1| - 0.051 13.5 4.0 1.7 8.6 0.2 3.0 2 1 0 2 2 2 0 Deltamethrin resistance NQR2_RnfD_RnfE PF03116.15 gi|320100304|ref|YP_004175896.1| - 0.067 12.6 7.4 0.015 14.7 2.8 1.9 1 1 0 1 1 1 0 NQR2, RnfD, RnfE family SpoIIIAC PF06686.11 gi|320100304|ref|YP_004175896.1| - 0.1 12.8 6.5 3.2 8.0 0.1 3.3 2 1 1 3 3 3 0 Stage III sporulation protein AC/AD protein family DUF2157 PF09925.9 gi|320100304|ref|YP_004175896.1| - 0.4 10.5 10.0 0.25 11.1 4.1 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) SLATT_1 PF18181.1 gi|320100304|ref|YP_004175896.1| - 1.3 9.0 9.2 0.065 13.2 3.1 1.8 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 ASFV_L11L PF05293.11 gi|320100304|ref|YP_004175896.1| - 2.6 8.4 5.5 0.55 10.6 1.3 2.0 2 0 0 2 2 2 0 African swine fever virus (ASFV) L11L protein E1-E2_ATPase PF00122.20 gi|320100305|ref|YP_004175897.1| - 1.3e-43 148.6 0.4 3.1e-43 147.4 0.4 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|320100305|ref|YP_004175897.1| - 5.7e-31 108.4 0.0 1.1e-30 107.5 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|320100305|ref|YP_004175897.1| - 3.5e-10 40.2 0.0 6.2e-07 29.8 0.0 2.7 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|320100305|ref|YP_004175897.1| - 6.2e-06 26.1 0.0 0.0089 15.8 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|320100305|ref|YP_004175897.1| - 0.052 13.9 0.2 1.7 9.0 0.0 2.7 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase YHS PF04945.13 gi|320100306|ref|YP_004175898.1| - 3.5e-20 71.8 2.2 3.9e-20 71.7 2.2 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|320100306|ref|YP_004175898.1| - 0.0013 19.0 1.8 0.0019 18.5 1.8 1.5 1 1 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|320100306|ref|YP_004175898.1| - 0.01 15.7 1.3 0.017 15.0 1.2 1.4 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif FAP206 PF12018.8 gi|320100306|ref|YP_004175898.1| - 0.044 13.3 0.0 0.049 13.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF2116 PF09889.9 gi|320100306|ref|YP_004175898.1| - 0.085 12.8 0.8 0.28 11.2 0.5 1.8 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) SAM_adeno_trans PF01887.16 gi|320100307|ref|YP_004175899.1| - 3.2e-81 272.2 0.1 3.6e-81 272.1 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase TcpA PF05946.12 gi|320100307|ref|YP_004175899.1| - 0.068 13.3 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Toxin-coregulated pilus subunit TcpA Proton_antipo_M PF00361.20 gi|320100308|ref|YP_004175900.1| - 3.5e-51 174.2 20.8 3.5e-51 174.2 20.8 2.0 1 1 1 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|320100308|ref|YP_004175900.1| - 0.0051 16.9 1.4 0.0051 16.9 1.4 3.8 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tgi2PP PF18250.1 gi|320100308|ref|YP_004175900.1| - 0.091 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 Effector immunity protein Tgi2PP MNHE PF01899.16 gi|320100309|ref|YP_004175901.1| - 1.8e-34 118.6 1.6 2.1e-34 118.4 1.6 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q2 PF00420.24 gi|320100310|ref|YP_004175902.1| - 3.3e-19 68.4 4.2 4.4e-19 68.0 4.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AzlC PF03591.14 gi|320100310|ref|YP_004175902.1| - 0.017 15.5 1.1 0.026 15.0 1.1 1.3 1 1 0 1 1 1 0 AzlC protein MnhB PF04039.13 gi|320100311|ref|YP_004175903.1| - 6.1e-18 65.3 12.6 6.1e-18 65.3 12.6 2.2 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|320100311|ref|YP_004175903.1| - 0.071 12.6 0.1 0.15 11.6 0.1 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) DUF4040 PF13244.6 gi|320100312|ref|YP_004175904.1| - 8.9e-10 38.6 8.5 8.9e-10 38.6 8.5 1.8 1 1 1 2 2 2 2 Domain of unknown function (DUF4040) DUF2070 PF09843.9 gi|320100312|ref|YP_004175904.1| - 0.064 11.5 6.8 0.064 11.5 6.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) PhaG_MnhG_YufB PF03334.14 gi|320100313|ref|YP_004175905.1| - 1.9e-19 69.6 11.4 2.6e-19 69.2 11.4 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit ExoD PF06055.12 gi|320100313|ref|YP_004175905.1| - 0.032 13.6 5.3 0.044 13.1 5.3 1.4 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD Virul_fac_BrkB PF03631.15 gi|320100313|ref|YP_004175905.1| - 0.052 13.2 8.5 0.059 13.0 8.5 1.1 1 0 0 1 1 1 0 Virulence factor BrkB FAM163 PF15069.6 gi|320100313|ref|YP_004175905.1| - 0.069 13.6 0.0 0.092 13.2 0.0 1.2 1 0 0 1 1 1 0 FAM163 family MrpF_PhaF PF04066.13 gi|320100314|ref|YP_004175906.1| - 3.2e-10 40.3 4.1 3.2e-10 40.3 4.1 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Glyco_hydro_57 PF03065.15 gi|320100315|ref|YP_004175907.1| - 7.8e-78 261.9 0.0 1.1e-77 261.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glucodextran_C PF09985.9 gi|320100315|ref|YP_004175907.1| - 2.1e-70 236.7 1.8 4.5e-70 235.6 0.7 2.1 3 0 0 3 3 3 1 C-terminal binding-module, SLH-like, of glucodextranase Mucin PF01456.17 gi|320100315|ref|YP_004175907.1| - 0.004 17.1 29.3 0.0087 16.1 29.3 1.5 1 0 0 1 1 1 1 Mucin-like glycoprotein Med13_C PF06333.12 gi|320100315|ref|YP_004175907.1| - 0.038 13.2 2.5 0.07 12.4 2.5 1.3 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain TMEM154 PF15102.6 gi|320100315|ref|YP_004175907.1| - 0.05 13.5 5.4 0.092 12.7 5.4 1.4 1 0 0 1 1 1 0 TMEM154 protein family SPESP1 PF15754.5 gi|320100315|ref|YP_004175907.1| - 0.53 9.4 2.7 0.85 8.7 2.7 1.2 1 0 0 1 1 1 0 Sperm equatorial segment protein 1 SSP160 PF06933.11 gi|320100315|ref|YP_004175907.1| - 0.76 7.9 24.3 1.3 7.2 24.3 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 FSA_C PF10479.9 gi|320100315|ref|YP_004175907.1| - 0.8 7.8 8.7 1.2 7.2 8.7 1.1 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus AJAP1_PANP_C PF15298.6 gi|320100315|ref|YP_004175907.1| - 1.9 8.7 15.8 3.3 7.9 15.8 1.3 1 0 0 1 1 1 0 AJAP1/PANP C-terminus Cdc6_C PF09079.11 gi|320100317|ref|YP_004175909.1| - 1.2e-17 63.7 1.3 4.7e-17 61.7 0.7 2.2 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|320100317|ref|YP_004175909.1| - 8.5e-10 39.3 0.5 2.2e-08 34.7 0.1 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|320100317|ref|YP_004175909.1| - 9.1e-10 38.9 0.0 3.5e-09 37.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|320100317|ref|YP_004175909.1| - 2.9e-05 24.1 0.0 5.4e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|320100317|ref|YP_004175909.1| - 0.0012 18.6 0.0 0.0026 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|320100317|ref|YP_004175909.1| - 0.0052 17.2 0.0 0.012 16.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|320100317|ref|YP_004175909.1| - 0.0092 16.2 1.1 0.018 15.3 0.1 2.0 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|320100317|ref|YP_004175909.1| - 0.0096 15.3 0.3 0.19 11.1 0.1 2.6 3 0 0 3 3 3 1 KaiC AAA_19 PF13245.6 gi|320100317|ref|YP_004175909.1| - 0.015 15.6 0.0 0.028 14.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_assoc_2 PF16193.5 gi|320100317|ref|YP_004175909.1| - 0.045 14.1 0.3 0.13 12.6 0.3 1.8 2 0 0 2 2 1 0 AAA C-terminal domain TniB PF05621.11 gi|320100317|ref|YP_004175909.1| - 0.05 13.0 0.0 0.087 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial TniB protein NACHT PF05729.12 gi|320100317|ref|YP_004175909.1| - 0.054 13.4 0.0 0.097 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TIP49_C PF17856.1 gi|320100317|ref|YP_004175909.1| - 0.054 13.6 0.3 16 5.7 0.1 3.1 3 1 0 3 3 3 0 TIP49 AAA-lid domain NB-ARC PF00931.22 gi|320100317|ref|YP_004175909.1| - 0.083 12.1 0.0 0.21 10.8 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain T2SSE PF00437.20 gi|320100317|ref|YP_004175909.1| - 0.11 11.6 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|320100317|ref|YP_004175909.1| - 0.14 12.1 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 NTPase DUF815 PF05673.13 gi|320100317|ref|YP_004175909.1| - 0.14 11.3 0.1 0.38 9.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) SNase PF00565.17 gi|320100319|ref|YP_004175911.1| - 1.2e-06 28.9 0.0 3.8e-06 27.3 0.0 1.9 1 0 0 1 1 1 1 Staphylococcal nuclease homologue SKG6 PF08693.10 gi|320100319|ref|YP_004175911.1| - 0.22 11.0 3.5 1.1 8.8 3.5 2.3 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Ribosomal_S25 PF03297.15 gi|320100320|ref|YP_004175912.1| - 2.3e-11 43.8 0.0 2.5e-11 43.7 0.0 1.0 1 0 0 1 1 1 1 S25 ribosomal protein EAP30 PF04157.16 gi|320100320|ref|YP_004175912.1| - 0.008 15.5 0.0 0.0088 15.3 0.0 1.0 1 0 0 1 1 1 1 EAP30/Vps36 family Fe_dep_repress PF01325.19 gi|320100320|ref|YP_004175912.1| - 0.046 13.9 0.1 0.062 13.5 0.1 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|320100320|ref|YP_004175912.1| - 0.083 12.8 0.3 0.14 12.1 0.3 1.4 1 1 0 1 1 1 0 MarR family PapA_C PF16911.5 gi|320100320|ref|YP_004175912.1| - 0.1 12.7 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus CTP-dep_RFKase PF01982.16 gi|320100321|ref|YP_004175913.1| - 7.1e-30 103.6 0.0 8.6e-30 103.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF120 MazE_antitoxin PF04014.18 gi|320100321|ref|YP_004175913.1| - 0.00057 19.8 0.0 0.021 14.8 0.0 2.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin AFOR_C PF01314.18 gi|320100323|ref|YP_004175915.1| - 1.5e-110 369.9 0.4 1.8e-110 369.6 0.4 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|320100323|ref|YP_004175915.1| - 1.7e-73 246.7 0.1 2.6e-73 246.1 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PAPS_reduct PF01507.19 gi|320100324|ref|YP_004175916.1| - 5.5e-36 124.2 0.0 7.5e-36 123.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Dam PF05869.11 gi|320100325|ref|YP_004175917.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 DNA N-6-adenine-methyltransferase (Dam) Amidohydro_1 PF01979.20 gi|320100325|ref|YP_004175917.1| - 0.074 12.4 0.0 3.8 6.7 0.0 2.1 2 0 0 2 2 2 0 Amidohydrolase family AP_endonuc_2 PF01261.24 gi|320100325|ref|YP_004175917.1| - 0.14 11.5 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel CDP-OH_P_transf PF01066.21 gi|320100326|ref|YP_004175918.1| - 2.5e-12 47.3 3.1 2.5e-12 47.3 3.1 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Bac_export_2 PF01312.19 gi|320100326|ref|YP_004175918.1| - 7.6 5.6 7.0 16 4.6 7.0 1.5 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family DHH PF01368.20 gi|320100327|ref|YP_004175919.1| - 0.0029 17.8 0.0 0.0046 17.2 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|320100327|ref|YP_004175919.1| - 0.046 14.1 0.6 0.17 12.3 0.4 2.0 2 0 0 2 2 2 0 DHHA1 domain DD_K PF12121.8 gi|320100327|ref|YP_004175919.1| - 3.9 7.7 5.0 10 6.4 0.1 3.0 3 0 0 3 3 3 0 Dermaseptin Hist_deacetyl PF00850.19 gi|320100328|ref|YP_004175920.1| - 1.8e-50 172.2 0.0 2.5e-50 171.7 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain CYTH PF01928.21 gi|320100329|ref|YP_004175921.1| - 1.1e-21 77.6 0.0 1.3e-21 77.3 0.0 1.1 1 0 0 1 1 1 1 CYTH domain PDDEXK_3 PF13366.6 gi|320100330|ref|YP_004175922.1| - 2.9e-06 27.6 0.0 5.4e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.7 gi|320100330|ref|YP_004175922.1| - 1.5e-05 25.1 0.8 0.037 13.9 0.1 2.9 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|320100330|ref|YP_004175922.1| - 0.00016 21.8 0.6 0.00041 20.5 0.6 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF83 Tox-REase-9 PF15650.6 gi|320100330|ref|YP_004175922.1| - 0.0032 17.7 0.0 0.0089 16.3 0.0 1.8 1 1 0 1 1 1 1 Restriction endonuclease fold toxin 9 Dna2 PF08696.11 gi|320100330|ref|YP_004175922.1| - 0.18 11.6 0.0 0.32 10.8 0.0 1.5 1 0 0 1 1 1 0 DNA replication factor Dna2 MFS_1 PF07690.16 gi|320100331|ref|YP_004175923.1| - 1.1e-25 90.4 58.1 7.9e-16 57.9 19.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|320100331|ref|YP_004175923.1| - 7.3e-12 44.8 29.6 1.2e-06 27.7 18.6 2.1 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|320100331|ref|YP_004175923.1| - 0.0003 19.3 29.7 0.00048 18.7 10.0 2.1 1 1 1 2 2 2 2 Transmembrane secretion effector Pam17 PF08566.10 gi|320100331|ref|YP_004175923.1| - 2 8.2 5.7 0.37 10.6 1.0 2.1 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 SBP_bac_8 PF13416.6 gi|320100332|ref|YP_004175924.1| - 3.3e-31 109.1 0.9 5.9e-31 108.3 0.9 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|320100332|ref|YP_004175924.1| - 2.5e-24 86.8 2.9 4.3e-24 86.0 2.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Mucin PF01456.17 gi|320100332|ref|YP_004175924.1| - 0.24 11.4 19.3 0.54 10.2 19.3 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein SSP160 PF06933.11 gi|320100332|ref|YP_004175924.1| - 1 7.5 14.6 1.6 6.9 14.6 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF3439 PF11921.8 gi|320100332|ref|YP_004175924.1| - 6.1 6.8 14.4 14 5.7 14.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) BPD_transp_1 PF00528.22 gi|320100333|ref|YP_004175925.1| - 4.3e-15 55.9 14.8 4.3e-15 55.9 14.8 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Git3 PF11710.8 gi|320100333|ref|YP_004175925.1| - 0.017 14.9 0.4 0.043 13.6 0.4 1.6 1 0 0 1 1 1 0 G protein-coupled glucose receptor regulating Gpa2 TM_PBP2_N PF16296.5 gi|320100333|ref|YP_004175925.1| - 0.093 12.9 0.2 0.27 11.4 0.2 1.8 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters CoatB PF10389.9 gi|320100333|ref|YP_004175925.1| - 0.69 9.8 5.1 1.5 8.7 5.1 1.5 1 0 0 1 1 1 0 Bacteriophage coat protein B BPD_transp_1 PF00528.22 gi|320100334|ref|YP_004175926.1| - 4.5e-11 42.8 15.2 4.5e-11 42.8 15.2 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF805 PF05656.14 gi|320100334|ref|YP_004175926.1| - 0.64 10.5 11.8 0.11 12.9 4.8 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF805) TFIIB PF00382.19 gi|320100335|ref|YP_004175927.1| - 1.2e-13 50.9 0.0 1.1e-08 35.0 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|320100335|ref|YP_004175927.1| - 3.6e-10 39.2 1.4 6.6e-10 38.3 1.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|320100335|ref|YP_004175927.1| - 3e-05 23.6 0.8 4.9e-05 22.9 0.8 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.6 gi|320100335|ref|YP_004175927.1| - 0.005 17.2 0.8 0.01 16.2 0.8 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.10 gi|320100335|ref|YP_004175927.1| - 0.01 15.5 0.8 0.02 14.6 0.8 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|320100335|ref|YP_004175927.1| - 0.011 15.6 0.8 0.022 14.7 0.8 1.4 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|320100335|ref|YP_004175927.1| - 0.04 13.9 0.4 0.069 13.1 0.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Cyclin_C PF02984.19 gi|320100335|ref|YP_004175927.1| - 0.043 13.9 0.0 1 9.5 0.0 2.1 1 1 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.7 gi|320100335|ref|YP_004175927.1| - 0.044 13.8 0.3 0.086 12.9 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-RRN7 PF11781.8 gi|320100335|ref|YP_004175927.1| - 0.065 12.9 2.2 0.11 12.2 2.2 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 OmpA_membrane PF01389.17 gi|320100335|ref|YP_004175927.1| - 0.067 12.9 0.0 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 OmpA-like transmembrane domain OrfB_Zn_ribbon PF07282.11 gi|320100335|ref|YP_004175927.1| - 0.14 12.1 0.8 0.32 11.0 0.8 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PADR1 PF08063.12 gi|320100335|ref|YP_004175927.1| - 0.16 11.8 1.0 0.27 11.0 1.0 1.3 1 0 0 1 1 1 0 PADR1 (NUC008) domain C1_2 PF03107.16 gi|320100335|ref|YP_004175927.1| - 0.16 12.3 1.0 0.35 11.2 1.0 1.5 1 0 0 1 1 1 0 C1 domain DUF3268 PF11672.8 gi|320100335|ref|YP_004175927.1| - 0.17 12.2 0.7 0.98 9.8 0.8 2.3 2 1 0 2 2 2 0 zinc-finger-containing domain zf-ribbon_3 PF13248.6 gi|320100335|ref|YP_004175927.1| - 0.17 11.4 1.4 8.9 5.9 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|320100335|ref|YP_004175927.1| - 0.21 11.3 1.9 5.1 7.0 0.5 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPCC PF14206.6 gi|320100335|ref|YP_004175927.1| - 0.22 11.4 0.9 0.53 10.1 0.9 1.6 1 0 0 1 1 1 0 Cysteine-rich CPCC Zn-ribbon_8 PF09723.10 gi|320100335|ref|YP_004175927.1| - 0.41 10.8 2.2 1.6 8.9 2.2 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|320100335|ref|YP_004175927.1| - 3.1 7.6 5.2 6.8 6.5 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Gar1 PF04410.14 gi|320100336|ref|YP_004175928.1| - 5.2e-07 29.6 0.1 5.5e-07 29.5 0.1 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.16 gi|320100336|ref|YP_004175928.1| - 0.041 14.0 0.9 0.05 13.7 0.8 1.4 1 1 0 1 1 1 0 PRC-barrel domain CSD2 PF17876.1 gi|320100336|ref|YP_004175928.1| - 0.076 13.2 0.0 0.097 12.9 0.0 1.3 1 0 0 1 1 1 0 Cold shock domain SRP19 PF01922.17 gi|320100337|ref|YP_004175929.1| - 4.5e-21 75.6 0.1 6e-21 75.2 0.1 1.2 1 0 0 1 1 1 1 SRP19 protein COX5A PF02284.16 gi|320100337|ref|YP_004175929.1| - 0.044 13.8 0.0 0.065 13.2 0.0 1.3 1 0 0 1 1 1 0 Cytochrome c oxidase subunit Va Ribosomal_S8e PF01201.22 gi|320100338|ref|YP_004175930.1| - 3e-27 95.5 0.6 3.8e-27 95.1 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e Spiralin PF05215.13 gi|320100338|ref|YP_004175930.1| - 0.0044 16.4 0.6 0.0052 16.2 0.6 1.0 1 0 0 1 1 1 1 Spiralin Chromate_transp PF02417.15 gi|320100339|ref|YP_004175931.1| - 1.5e-41 142.2 16.6 1.8e-41 141.9 16.6 1.0 1 0 0 1 1 1 1 Chromate transporter Succ_CoA_lig PF13607.6 gi|320100340|ref|YP_004175932.1| - 1e-53 180.8 2.4 9.8e-53 177.7 0.7 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|320100340|ref|YP_004175932.1| - 1.6e-28 99.5 0.0 4.7e-27 94.8 0.0 2.6 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|320100340|ref|YP_004175932.1| - 1.5e-13 51.2 0.0 4.1e-13 49.8 0.0 1.8 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|320100340|ref|YP_004175932.1| - 0.028 15.2 0.0 14 6.5 0.0 3.4 3 1 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Glyco_trans_1_4 PF13692.6 gi|320100340|ref|YP_004175932.1| - 0.035 14.5 0.1 0.47 10.9 0.0 2.6 2 0 0 2 2 2 0 Glycosyl transferases group 1 F420_oxidored PF03807.17 gi|320100340|ref|YP_004175932.1| - 0.09 13.4 0.0 7.5 7.2 0.0 3.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ATP-grasp_5 PF13549.6 gi|320100341|ref|YP_004175933.1| - 2.1e-80 269.4 0.3 2.3e-80 269.2 0.3 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|320100341|ref|YP_004175933.1| - 5.5e-06 26.1 0.1 1.1e-05 25.1 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|320100341|ref|YP_004175933.1| - 0.065 12.7 0.1 0.14 11.6 0.1 1.5 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF3584 PF12128.8 gi|320100342|ref|YP_004175934.1| - 1.1e-09 36.5 37.4 1.3e-09 36.2 37.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF948 PF06103.11 gi|320100342|ref|YP_004175934.1| - 8.6e-08 32.3 9.6 7.9e-05 22.8 0.8 4.1 3 1 1 4 4 4 2 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.12 gi|320100342|ref|YP_004175934.1| - 1.5e-05 25.0 9.4 6.5e-05 23.0 1.7 2.9 1 1 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus LPP PF04728.13 gi|320100342|ref|YP_004175934.1| - 2.4e-05 24.6 5.0 0.083 13.3 0.1 4.5 4 1 0 4 4 4 1 Lipoprotein leucine-zipper EzrA PF06160.12 gi|320100342|ref|YP_004175934.1| - 2.6e-05 22.6 36.4 7.3e-05 21.1 17.1 2.3 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA GAS PF13851.6 gi|320100342|ref|YP_004175934.1| - 0.00013 21.4 53.6 0.00097 18.5 10.4 3.4 1 1 2 3 3 3 2 Growth-arrest specific micro-tubule binding NPV_P10 PF05531.12 gi|320100342|ref|YP_004175934.1| - 0.00017 22.0 16.5 0.026 15.0 4.4 4.9 3 1 2 5 5 5 1 Nucleopolyhedrovirus P10 protein Snapin_Pallidin PF14712.6 gi|320100342|ref|YP_004175934.1| - 0.00018 21.9 7.3 0.00018 21.9 7.3 4.3 1 1 2 4 4 4 2 Snapin/Pallidin WXG100 PF06013.12 gi|320100342|ref|YP_004175934.1| - 0.00059 20.0 0.3 0.00059 20.0 0.3 3.0 4 1 0 4 4 1 1 Proteins of 100 residues with WXG CENP-F_leu_zip PF10473.9 gi|320100342|ref|YP_004175934.1| - 0.00062 19.8 55.0 0.11 12.5 15.2 4.6 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 gi|320100342|ref|YP_004175934.1| - 0.00078 19.5 25.9 0.0012 18.9 3.9 4.1 1 1 3 4 4 4 1 Protein of unknown function (DUF1664) IFT57 PF10498.9 gi|320100342|ref|YP_004175934.1| - 0.0012 17.9 22.1 0.0012 17.9 22.1 2.2 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 TPR_MLP1_2 PF07926.12 gi|320100342|ref|YP_004175934.1| - 0.0016 18.5 45.5 0.0083 16.2 15.1 4.1 1 1 2 4 4 4 3 TPR/MLP1/MLP2-like protein SKA2 PF16740.5 gi|320100342|ref|YP_004175934.1| - 0.0017 18.1 5.3 0.0017 18.1 5.3 5.1 1 1 3 4 4 4 1 Spindle and kinetochore-associated protein 2 HemX PF04375.14 gi|320100342|ref|YP_004175934.1| - 0.0024 17.2 5.3 0.0024 17.2 5.3 3.1 1 1 1 2 2 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase KASH_CCD PF14662.6 gi|320100342|ref|YP_004175934.1| - 0.003 17.4 19.9 0.003 17.4 19.9 3.5 1 1 1 3 3 3 1 Coiled-coil region of CCDC155 or KASH DUF3450 PF11932.8 gi|320100342|ref|YP_004175934.1| - 0.004 16.5 7.6 0.004 16.5 7.6 3.9 1 1 4 5 5 5 2 Protein of unknown function (DUF3450) Spc7 PF08317.11 gi|320100342|ref|YP_004175934.1| - 0.0043 16.0 49.0 0.018 13.9 21.4 3.7 1 1 2 3 3 3 1 Spc7 kinetochore protein Cep57_MT_bd PF06657.13 gi|320100342|ref|YP_004175934.1| - 0.0045 17.4 5.4 0.0045 17.4 5.4 5.6 2 2 2 5 5 4 1 Centrosome microtubule-binding domain of Cep57 KELK PF15796.5 gi|320100342|ref|YP_004175934.1| - 0.0052 17.2 13.4 0.0052 17.2 13.4 4.7 3 1 0 5 5 4 1 KELK-motif containing domain of MRCK Ser/Thr protein kinase TMF_TATA_bd PF12325.8 gi|320100342|ref|YP_004175934.1| - 0.0068 16.6 11.3 0.0068 16.6 11.3 4.7 1 1 4 5 5 4 1 TATA element modulatory factor 1 TATA binding SHE3 PF17078.5 gi|320100342|ref|YP_004175934.1| - 0.012 15.4 34.4 0.15 11.7 6.7 2.8 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 DUF2937 PF11157.8 gi|320100342|ref|YP_004175934.1| - 0.012 15.4 1.0 0.012 15.4 1.0 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF2937) CK2S PF15011.6 gi|320100342|ref|YP_004175934.1| - 0.014 15.3 3.8 0.014 15.3 3.8 3.4 1 1 1 3 3 3 0 Casein Kinase 2 substrate MCPsignal PF00015.21 gi|320100342|ref|YP_004175934.1| - 0.014 15.2 11.5 0.045 13.6 1.1 2.9 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain ATG16 PF08614.11 gi|320100342|ref|YP_004175934.1| - 0.015 15.5 43.4 0.092 13.0 20.1 3.2 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Occludin_ELL PF07303.13 gi|320100342|ref|YP_004175934.1| - 0.016 15.9 0.6 0.016 15.9 0.6 4.5 1 1 2 4 4 3 0 Occludin homology domain Taxilin PF09728.9 gi|320100342|ref|YP_004175934.1| - 0.019 14.2 44.7 0.026 13.7 44.7 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Laminin_I PF06008.14 gi|320100342|ref|YP_004175934.1| - 0.021 14.5 7.6 0.021 14.5 7.6 3.2 1 1 2 3 3 3 0 Laminin Domain I Fez1 PF06818.15 gi|320100342|ref|YP_004175934.1| - 0.022 15.2 16.6 0.022 15.2 16.6 2.6 1 1 1 2 2 2 0 Fez1 bZIP_1 PF00170.21 gi|320100342|ref|YP_004175934.1| - 0.024 14.7 0.3 0.024 14.7 0.3 6.5 5 2 1 6 6 5 0 bZIP transcription factor DUF812 PF05667.11 gi|320100342|ref|YP_004175934.1| - 0.03 13.2 50.7 0.14 11.0 24.8 2.9 1 1 0 2 2 2 0 Protein of unknown function (DUF812) HrpB7 PF09486.10 gi|320100342|ref|YP_004175934.1| - 0.032 14.6 3.2 0.032 14.6 3.2 4.1 1 1 1 3 3 2 0 Bacterial type III secretion protein (HrpB7) DUF5082 PF16888.5 gi|320100342|ref|YP_004175934.1| - 0.035 14.4 40.5 0.52 10.6 4.4 4.8 1 1 3 4 4 4 0 Domain of unknown function (DUF5082) Mod_r PF07200.13 gi|320100342|ref|YP_004175934.1| - 0.04 14.0 40.6 0.94 9.6 7.8 3.9 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein MbeD_MobD PF04899.12 gi|320100342|ref|YP_004175934.1| - 0.043 13.9 9.2 0.83 9.8 1.1 3.7 4 1 0 4 4 3 0 MbeD/MobD like ADIP PF11559.8 gi|320100342|ref|YP_004175934.1| - 0.058 13.5 42.9 0.026 14.6 17.9 3.5 1 1 3 4 4 4 0 Afadin- and alpha -actinin-Binding DUF4763 PF15960.5 gi|320100342|ref|YP_004175934.1| - 0.083 12.2 35.2 0.052 12.8 3.9 3.7 1 1 1 3 3 3 0 Domain of unknown function (DUF4763) HOOK PF05622.12 gi|320100342|ref|YP_004175934.1| - 0.09 10.9 45.3 0.16 10.1 44.9 1.4 1 1 0 1 1 1 0 HOOK protein AKNA PF12443.8 gi|320100342|ref|YP_004175934.1| - 0.099 13.3 0.6 0.099 13.3 0.6 4.8 3 2 3 6 6 4 0 AT-hook-containing transcription factor UPF0242 PF06785.11 gi|320100342|ref|YP_004175934.1| - 0.1 12.7 47.6 0.035 14.2 19.4 3.2 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus YscO PF07321.12 gi|320100342|ref|YP_004175934.1| - 0.12 12.3 43.2 0.21 11.5 10.8 4.0 1 1 3 4 4 4 0 Type III secretion protein YscO Seryl_tRNA_N PF02403.22 gi|320100342|ref|YP_004175934.1| - 0.14 12.4 51.5 0.085 13.1 6.4 5.4 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain PI_PP_I PF18363.1 gi|320100342|ref|YP_004175934.1| - 0.14 12.3 6.4 2.2 8.5 0.7 3.2 1 1 1 3 3 2 0 Phosphoinositide phosphatase insertion domain AAA_13 PF13166.6 gi|320100342|ref|YP_004175934.1| - 0.15 10.7 35.3 0.25 9.9 30.4 2.5 1 1 1 2 2 2 0 AAA domain ZapB PF06005.12 gi|320100342|ref|YP_004175934.1| - 0.15 12.5 64.3 0.36 11.3 4.5 6.2 2 2 4 6 6 6 0 Cell division protein ZapB Spectrin PF00435.21 gi|320100342|ref|YP_004175934.1| - 0.17 12.4 31.3 0.62 10.6 8.1 3.7 2 1 1 3 3 3 0 Spectrin repeat DUF4298 PF14131.6 gi|320100342|ref|YP_004175934.1| - 0.19 11.7 20.0 0.92 9.5 0.3 5.3 3 2 2 5 5 5 0 Domain of unknown function (DUF4298) T3SSipB PF16535.5 gi|320100342|ref|YP_004175934.1| - 0.26 11.8 13.2 0.026 15.0 5.5 2.7 1 1 1 3 3 3 0 Type III cell invasion protein SipB Bacillus_HBL PF05791.11 gi|320100342|ref|YP_004175934.1| - 0.26 11.1 22.8 1.2 8.9 6.7 4.2 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) Sec34 PF04136.15 gi|320100342|ref|YP_004175934.1| - 0.27 11.1 20.2 0.15 12.0 6.3 3.9 1 1 3 4 4 4 0 Sec34-like family Surfac_D-trimer PF09006.11 gi|320100342|ref|YP_004175934.1| - 0.28 11.1 1.9 8.4 6.4 0.0 3.8 4 0 0 4 4 4 0 Lung surfactant protein D coiled-coil trimerisation TMPIT PF07851.13 gi|320100342|ref|YP_004175934.1| - 0.28 10.4 29.2 0.03 13.6 9.8 2.9 1 1 2 3 3 3 0 TMPIT-like protein ALIX_LYPXL_bnd PF13949.6 gi|320100342|ref|YP_004175934.1| - 0.29 10.4 37.9 1.9 7.7 17.6 2.9 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV GlcNAc-1_reg PF18440.1 gi|320100342|ref|YP_004175934.1| - 0.34 11.2 8.6 0.06 13.6 3.1 2.6 2 1 0 2 2 1 0 Putative GlcNAc-1 phosphotransferase regulatory domain FAM184 PF15665.5 gi|320100342|ref|YP_004175934.1| - 0.38 10.5 41.3 0.23 11.2 13.4 3.6 1 1 1 2 2 2 0 Family with sequence similarity 184, A and B YabA PF06156.13 gi|320100342|ref|YP_004175934.1| - 0.41 11.3 42.6 0.59 10.8 0.6 5.0 1 1 3 5 5 5 0 Initiation control protein YabA APG6_N PF17675.1 gi|320100342|ref|YP_004175934.1| - 0.43 11.1 53.2 20 5.7 20.6 4.1 1 1 1 2 2 2 0 Apg6 coiled-coil region DASH_Dam1 PF08653.10 gi|320100342|ref|YP_004175934.1| - 0.45 10.4 3.2 7.2 6.5 0.3 3.5 3 1 0 3 3 2 0 DASH complex subunit Dam1 Lebercilin PF15619.6 gi|320100342|ref|YP_004175934.1| - 0.62 9.7 57.7 8.5 6.0 32.6 3.5 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DUF4326 PF14216.6 gi|320100342|ref|YP_004175934.1| - 0.71 10.6 7.0 0.48 11.2 0.5 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4326) DHR10 PF18595.1 gi|320100342|ref|YP_004175934.1| - 0.72 9.9 55.3 0.026 14.6 7.7 4.4 2 2 2 4 4 4 0 Designed helical repeat protein 10 domain BLOC1_2 PF10046.9 gi|320100342|ref|YP_004175934.1| - 0.83 10.0 30.8 1 9.7 6.1 5.2 1 1 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TraF_2 PF13729.6 gi|320100342|ref|YP_004175934.1| - 0.84 9.0 3.8 2.2 7.6 0.6 2.6 2 1 1 3 3 3 0 F plasmid transfer operon, TraF, protein FapA PF03961.13 gi|320100342|ref|YP_004175934.1| - 0.85 8.2 45.2 0.039 12.6 15.5 2.9 1 1 3 4 4 3 0 Flagellar Assembly Protein A FUSC PF04632.12 gi|320100342|ref|YP_004175934.1| - 0.87 8.0 6.6 4.1 5.8 6.1 1.9 1 1 1 2 2 2 0 Fusaric acid resistance protein family CorA PF01544.18 gi|320100342|ref|YP_004175934.1| - 0.92 8.8 25.3 0.54 9.5 8.9 2.3 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF4407 PF14362.6 gi|320100342|ref|YP_004175934.1| - 0.97 8.7 26.1 0.88 8.9 10.7 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) PI3K_P85_iSH2 PF16454.5 gi|320100342|ref|YP_004175934.1| - 1 9.0 40.2 1.8 8.1 7.3 4.4 1 1 2 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Phlebovirus_NSM PF07246.11 gi|320100342|ref|YP_004175934.1| - 1 8.7 31.5 0.49 9.7 4.5 3.3 1 1 2 3 3 3 0 Phlebovirus nonstructural protein NS-M Filament PF00038.21 gi|320100342|ref|YP_004175934.1| - 1 8.9 44.1 0.95 9.0 21.6 3.3 1 1 2 3 3 3 0 Intermediate filament protein DUF4201 PF13870.6 gi|320100342|ref|YP_004175934.1| - 1 9.0 56.0 2.9 7.6 13.6 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) Med10 PF09748.9 gi|320100342|ref|YP_004175934.1| - 1.6 8.7 13.0 2.5 8.1 1.1 3.8 1 1 1 2 2 2 0 Transcription factor subunit Med10 of Mediator complex Laminin_II PF06009.12 gi|320100342|ref|YP_004175934.1| - 1.8 8.6 32.9 0.09 12.8 5.0 4.1 1 1 1 3 3 2 0 Laminin Domain II DUF4795 PF16043.5 gi|320100342|ref|YP_004175934.1| - 2.1 7.9 38.0 6.7 6.3 9.7 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Allexi_40kDa PF05549.11 gi|320100342|ref|YP_004175934.1| - 2.3 7.7 19.5 0.24 10.9 5.0 3.0 1 1 3 4 4 4 0 Allexivirus 40kDa protein T4SS PF07996.11 gi|320100342|ref|YP_004175934.1| - 2.3 8.6 17.4 68 3.8 1.0 3.3 1 1 0 2 2 2 0 Type IV secretion system proteins Hemagglutinin PF00509.18 gi|320100342|ref|YP_004175934.1| - 2.6 6.4 6.4 4.3 5.6 6.0 1.5 1 1 0 1 1 1 0 Haemagglutinin Syntaxin-6_N PF09177.11 gi|320100342|ref|YP_004175934.1| - 2.8 8.5 32.8 2.2 8.9 7.9 4.5 1 1 3 4 4 3 0 Syntaxin 6, N-terminal FlgN PF05130.12 gi|320100342|ref|YP_004175934.1| - 3.1 8.3 39.6 1.9 9.0 6.6 3.5 1 1 1 3 3 3 0 FlgN protein SlyX PF04102.12 gi|320100342|ref|YP_004175934.1| - 3.1 8.5 32.8 0.27 11.9 1.1 6.1 1 1 6 7 7 7 0 SlyX Matrilin_ccoil PF10393.9 gi|320100342|ref|YP_004175934.1| - 3.3 7.6 12.5 6 6.8 0.7 4.4 3 1 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF745 PF05335.13 gi|320100342|ref|YP_004175934.1| - 3.6 7.3 24.7 0.66 9.7 8.4 3.3 1 1 1 3 3 3 0 Protein of unknown function (DUF745) GldM_N PF12081.8 gi|320100342|ref|YP_004175934.1| - 3.8 7.6 22.9 0.06 13.4 12.5 2.4 2 1 0 2 2 2 0 GldM N-terminal domain HAP1_N PF04849.13 gi|320100342|ref|YP_004175934.1| - 4.6 6.4 47.9 5.2 6.2 7.3 3.5 1 1 1 2 2 2 0 HAP1 N-terminal conserved region FlaC_arch PF05377.11 gi|320100342|ref|YP_004175934.1| - 4.9 7.6 32.6 1.1 9.7 0.6 5.6 3 3 4 7 7 5 0 Flagella accessory protein C (FlaC) HMMR_N PF15905.5 gi|320100342|ref|YP_004175934.1| - 5 6.5 50.9 28 4.0 27.7 2.6 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal PspA_IM30 PF04012.12 gi|320100342|ref|YP_004175934.1| - 6.3 6.3 37.9 0.6 9.6 8.6 3.9 1 1 2 3 3 2 0 PspA/IM30 family Atg14 PF10186.9 gi|320100342|ref|YP_004175934.1| - 6.4 5.8 50.2 0.62 9.1 24.5 3.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 V_ATPase_I PF01496.19 gi|320100342|ref|YP_004175934.1| - 6.6 4.5 34.1 0.61 7.9 10.3 2.8 1 1 3 4 4 4 0 V-type ATPase 116kDa subunit family COG6 PF06419.11 gi|320100342|ref|YP_004175934.1| - 7 4.7 30.2 0.041 12.1 9.5 3.2 1 1 1 3 3 3 0 Conserved oligomeric complex COG6 SpecificRecomb PF10136.9 gi|320100342|ref|YP_004175934.1| - 7.4 4.7 12.3 1.9 6.7 4.4 2.1 1 1 0 2 2 2 0 Site-specific recombinase DivIC PF04977.15 gi|320100342|ref|YP_004175934.1| - 8 6.3 50.3 0.36 10.6 6.3 6.8 3 2 4 7 7 7 0 Septum formation initiator Phage_GPO PF05929.11 gi|320100342|ref|YP_004175934.1| - 9.1 5.8 18.0 3.5 7.2 8.3 3.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Syntaxin_2 PF14523.6 gi|320100342|ref|YP_004175934.1| - 9.5 6.7 33.9 0.24 11.8 9.3 3.9 2 2 1 3 3 3 0 Syntaxin-like protein Prenyltransf PF01255.19 gi|320100343|ref|YP_004175935.1| - 4e-75 252.2 0.0 4.9e-75 251.9 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase CdvA PF18822.1 gi|320100344|ref|YP_004175936.1| - 6.9e-38 129.2 11.1 9.3e-38 128.8 11.1 1.2 1 0 0 1 1 1 1 CdvA-like coiled-coil domain BLOC1_2 PF10046.9 gi|320100344|ref|YP_004175936.1| - 4.5e-05 23.7 12.1 0.00099 19.4 4.0 2.6 3 0 0 3 3 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin-6_N PF09177.11 gi|320100344|ref|YP_004175936.1| - 0.0012 19.3 3.9 0.0033 17.9 3.7 1.9 1 1 1 2 2 2 1 Syntaxin 6, N-terminal Imm3 PF14425.6 gi|320100344|ref|YP_004175936.1| - 0.0021 18.1 2.0 0.0042 17.1 2.0 1.5 1 0 0 1 1 1 1 Immunity protein Imm3 PIN_8 PF18476.1 gi|320100344|ref|YP_004175936.1| - 0.0027 17.6 3.3 0.0035 17.2 3.3 1.1 1 0 0 1 1 1 1 PIN like domain Golgin_A5 PF09787.9 gi|320100344|ref|YP_004175936.1| - 0.0031 17.0 3.4 0.0042 16.6 3.4 1.1 1 0 0 1 1 1 1 Golgin subfamily A member 5 PRC PF05239.16 gi|320100344|ref|YP_004175936.1| - 0.0052 16.8 1.3 0.0095 16.0 0.2 1.9 2 0 0 2 2 2 1 PRC-barrel domain Fmp27_WPPW PF10359.9 gi|320100344|ref|YP_004175936.1| - 0.016 14.1 6.4 0.015 14.1 4.1 1.8 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain FlgN PF05130.12 gi|320100344|ref|YP_004175936.1| - 0.022 15.2 2.3 0.05 14.1 2.2 1.6 1 1 0 1 1 1 0 FlgN protein Baculo_PEP_C PF04513.12 gi|320100344|ref|YP_004175936.1| - 0.029 14.4 0.1 0.095 12.7 0.0 1.8 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4763 PF15960.5 gi|320100344|ref|YP_004175936.1| - 0.13 11.5 3.0 0.14 11.4 1.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) GIT_CC PF16559.5 gi|320100344|ref|YP_004175936.1| - 0.14 12.1 1.6 0.72 9.8 0.3 2.4 2 1 1 3 3 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor Fib_alpha PF08702.10 gi|320100344|ref|YP_004175936.1| - 0.14 12.3 6.2 0.16 12.2 2.3 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF2433 PF10360.9 gi|320100344|ref|YP_004175936.1| - 0.23 11.5 3.4 0.29 11.2 1.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2433) DUF883 PF05957.13 gi|320100344|ref|YP_004175936.1| - 0.26 11.9 3.7 0.11 13.1 1.0 1.7 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF883) DUF16 PF01519.16 gi|320100344|ref|YP_004175936.1| - 0.32 11.5 6.2 1.2 9.7 6.2 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF16 DivIVA PF05103.13 gi|320100344|ref|YP_004175936.1| - 0.39 10.8 5.7 0.82 9.8 5.5 1.7 1 1 0 1 1 1 0 DivIVA protein LMBR1 PF04791.16 gi|320100344|ref|YP_004175936.1| - 0.47 9.3 2.5 0.57 9.0 2.5 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein ISG65-75 PF11727.8 gi|320100344|ref|YP_004175936.1| - 0.51 9.5 8.1 0.94 8.6 3.1 2.0 1 1 1 2 2 2 0 Invariant surface glycoprotein Fzo_mitofusin PF04799.13 gi|320100344|ref|YP_004175936.1| - 0.54 9.8 5.9 0.45 10.0 1.9 2.5 1 1 1 2 2 2 0 fzo-like conserved region Uso1_p115_C PF04871.13 gi|320100344|ref|YP_004175936.1| - 0.65 10.4 8.1 0.26 11.6 4.5 1.9 1 1 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4795 PF16043.5 gi|320100344|ref|YP_004175936.1| - 0.8 9.3 8.8 3.1 7.4 4.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) PGBA_C PF15437.6 gi|320100344|ref|YP_004175936.1| - 1.8 9.0 6.6 3.1 8.2 6.6 1.3 1 0 0 1 1 1 0 Plasminogen-binding protein pgbA C-terminal APG6_N PF17675.1 gi|320100344|ref|YP_004175936.1| - 2.8 8.5 12.3 3.8 8.0 7.1 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region UPF0242 PF06785.11 gi|320100344|ref|YP_004175936.1| - 3.2 7.8 9.4 11 6.1 9.4 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FAM76 PF16046.5 gi|320100344|ref|YP_004175936.1| - 3.8 6.8 6.6 4.9 6.4 6.6 1.2 1 0 0 1 1 1 0 FAM76 protein YabA PF06156.13 gi|320100344|ref|YP_004175936.1| - 7.3 7.3 7.3 1.1 9.9 0.8 2.1 1 1 1 2 2 2 0 Initiation control protein YabA ZapB PF06005.12 gi|320100344|ref|YP_004175936.1| - 8.9 6.8 12.7 13 6.3 8.1 2.4 1 1 1 2 2 2 0 Cell division protein ZapB Med21 PF11221.8 gi|320100344|ref|YP_004175936.1| - 9.2 6.5 9.9 0.77 10.0 4.2 2.0 2 1 1 3 3 3 0 Subunit 21 of Mediator complex DUF1897 PF09005.10 gi|320100346|ref|YP_004175938.1| - 0.068 12.7 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1897) TP_methylase PF00590.20 gi|320100348|ref|YP_004175940.1| - 2.4e-21 76.7 0.2 2.8e-21 76.5 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peripla_BP_2 PF01497.18 gi|320100349|ref|YP_004175941.1| - 3.8e-16 59.4 0.0 5.6e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|320100350|ref|YP_004175942.1| - 4.9e-59 199.9 34.9 6.1e-59 199.5 34.9 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|320100350|ref|YP_004175942.1| - 0.037 13.5 22.7 0.068 12.6 22.7 1.6 1 1 0 1 1 1 0 ABC 3 transport family PEN-2 PF10251.9 gi|320100350|ref|YP_004175942.1| - 0.22 11.9 2.6 0.54 10.7 0.1 2.7 3 0 0 3 3 3 0 Presenilin enhancer-2 subunit of gamma secretase ABC_tran PF00005.27 gi|320100351|ref|YP_004175943.1| - 2e-20 73.7 0.0 2.5e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100351|ref|YP_004175943.1| - 4.2e-13 49.8 0.1 5.8e-06 26.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|320100351|ref|YP_004175943.1| - 5.4e-05 23.1 0.0 0.0032 17.2 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|320100351|ref|YP_004175943.1| - 0.00017 21.1 0.0 0.16 11.4 0.0 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|320100351|ref|YP_004175943.1| - 0.00031 21.3 0.0 0.00048 20.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|320100351|ref|YP_004175943.1| - 0.00063 20.2 0.0 0.0011 19.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|320100351|ref|YP_004175943.1| - 0.0015 18.9 0.0 0.01 16.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|320100351|ref|YP_004175943.1| - 0.0016 18.1 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|320100351|ref|YP_004175943.1| - 0.021 14.4 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|320100351|ref|YP_004175943.1| - 0.023 15.3 0.0 0.037 14.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|320100351|ref|YP_004175943.1| - 0.025 14.4 0.0 0.1 12.3 0.0 2.0 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_14 PF13173.6 gi|320100351|ref|YP_004175943.1| - 0.027 14.5 0.0 0.36 10.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|320100351|ref|YP_004175943.1| - 0.027 13.3 0.0 0.064 12.0 0.0 1.6 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|320100351|ref|YP_004175943.1| - 0.052 13.3 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|320100351|ref|YP_004175943.1| - 0.1 12.8 0.0 0.26 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|320100351|ref|YP_004175943.1| - 0.1 12.8 0.0 0.19 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|320100351|ref|YP_004175943.1| - 0.14 11.0 0.0 0.2 10.4 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) TsaE PF02367.17 gi|320100351|ref|YP_004175943.1| - 0.17 11.9 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF3584 PF12128.8 gi|320100351|ref|YP_004175943.1| - 0.36 8.3 0.1 0.46 7.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Isochorismatase PF00857.20 gi|320100352|ref|YP_004175944.1| - 9.2e-45 152.9 0.0 1e-44 152.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family MJ1316 PF04457.12 gi|320100354|ref|YP_004175946.1| - 3e-06 27.9 0.2 3.6e-06 27.6 0.2 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain ELFV_dehydrog PF00208.21 gi|320100355|ref|YP_004175947.1| - 7.8e-75 251.7 0.4 1e-74 251.3 0.4 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|320100355|ref|YP_004175947.1| - 3.6e-50 169.2 0.0 8.2e-50 168.0 0.0 1.6 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|320100355|ref|YP_004175947.1| - 7.8e-05 22.1 0.5 0.00015 21.1 0.2 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|320100355|ref|YP_004175947.1| - 0.0069 16.8 0.1 0.014 15.8 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|320100355|ref|YP_004175947.1| - 0.0074 16.4 1.6 0.074 13.1 0.4 2.2 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Bac_GDH PF05088.12 gi|320100355|ref|YP_004175947.1| - 0.0084 13.7 0.0 0.011 13.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase ThiF PF00899.21 gi|320100355|ref|YP_004175947.1| - 0.013 14.9 0.1 0.023 14.0 0.1 1.3 1 0 0 1 1 1 0 ThiF family DUF3158 PF11358.8 gi|320100355|ref|YP_004175947.1| - 0.014 15.1 0.0 0.077 12.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3158) CoA_transf_3 PF02515.17 gi|320100355|ref|YP_004175947.1| - 0.098 11.8 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 CoA-transferase family III Phage_holin_3_6 PF07332.11 gi|320100356|ref|YP_004175948.1| - 0.0097 15.9 0.7 0.011 15.8 0.7 1.0 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DPM3 PF08285.11 gi|320100356|ref|YP_004175948.1| - 0.068 13.4 1.4 0.07 13.3 1.4 1.1 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) SecE PF00584.20 gi|320100356|ref|YP_004175948.1| - 3.1 7.8 10.4 0.2 11.6 4.2 2.0 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex Nodulin_late PF07127.11 gi|320100356|ref|YP_004175948.1| - 7.7 6.9 7.3 2.8 8.3 4.8 1.5 1 1 0 1 1 1 0 Late nodulin protein polyprenyl_synt PF00348.17 gi|320100357|ref|YP_004175949.1| - 3.7e-53 180.2 0.0 5.3e-53 179.7 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase OMPdecase PF00215.24 gi|320100358|ref|YP_004175950.1| - 2.7e-24 86.0 0.8 3.4e-24 85.7 0.8 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|320100358|ref|YP_004175950.1| - 0.00053 19.2 0.1 0.0011 18.1 0.1 1.6 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|320100358|ref|YP_004175950.1| - 0.0025 17.3 0.3 0.0037 16.8 0.3 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.19 gi|320100358|ref|YP_004175950.1| - 0.008 15.6 0.8 0.01 15.2 0.8 1.5 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.17 gi|320100358|ref|YP_004175950.1| - 0.031 13.6 0.2 0.044 13.1 0.2 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase QRPTase_C PF01729.19 gi|320100358|ref|YP_004175950.1| - 0.031 14.0 0.2 0.095 12.5 0.2 1.9 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.18 gi|320100358|ref|YP_004175950.1| - 0.28 10.2 3.8 0.32 10.0 3.8 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase RNase_HII PF01351.18 gi|320100359|ref|YP_004175951.1| - 2.8e-36 125.2 0.0 3.2e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII MMR_HSR1_Xtn PF16897.5 gi|320100360|ref|YP_004175952.1| - 6.2e-21 74.4 0.0 1.1e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain TGS PF02824.21 gi|320100360|ref|YP_004175952.1| - 3.2e-20 71.9 0.1 6.4e-20 71.0 0.1 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|320100360|ref|YP_004175952.1| - 4.1e-16 59.1 0.0 8.6e-16 58.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|320100360|ref|YP_004175952.1| - 1.4e-10 40.9 0.0 7.1e-09 35.4 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|320100360|ref|YP_004175952.1| - 3.1e-05 24.1 0.4 0.0052 16.9 0.0 2.6 1 1 0 2 2 2 1 Protein of unknown function (DUF933) GTP_EFTU PF00009.27 gi|320100360|ref|YP_004175952.1| - 4e-05 23.3 0.1 0.49 9.9 0.1 3.9 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|320100360|ref|YP_004175952.1| - 0.017 15.0 0.0 6.4 6.6 0.0 2.5 2 0 0 2 2 2 0 RsgA GTPase SRPRB PF09439.10 gi|320100360|ref|YP_004175952.1| - 0.026 14.0 0.0 0.055 12.9 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|320100360|ref|YP_004175952.1| - 0.048 13.7 0.1 1.8 8.6 0.0 2.7 3 0 0 3 3 3 0 Dynamin family AAA_16 PF13191.6 gi|320100360|ref|YP_004175952.1| - 0.087 13.2 0.1 3.3 8.0 0.1 2.8 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|320100360|ref|YP_004175952.1| - 0.21 11.0 0.0 0.48 9.8 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI HisKA PF00512.25 gi|320100362|ref|YP_004175954.1| - 0.034 14.2 1.7 0.09 12.8 0.1 2.3 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain HHH_8 PF14716.6 gi|320100362|ref|YP_004175954.1| - 0.5 10.8 2.8 0.63 10.5 0.0 2.4 3 1 0 3 3 3 0 Helix-hairpin-helix domain PGM_PMM_I PF02878.16 gi|320100363|ref|YP_004175955.1| - 5.1e-44 149.3 0.0 1.1e-43 148.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|320100363|ref|YP_004175955.1| - 8.4e-24 84.2 0.0 3.3e-23 82.2 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|320100363|ref|YP_004175955.1| - 2.6e-21 76.0 0.0 6e-21 74.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|320100363|ref|YP_004175955.1| - 3.7e-12 46.3 0.1 1.1e-11 44.7 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain FrhB_FdhB_N PF04422.13 gi|320100363|ref|YP_004175955.1| - 0.12 12.5 0.0 2.7 8.2 0.0 2.9 4 0 0 4 4 4 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Trm112p PF03966.16 gi|320100364|ref|YP_004175956.1| - 3.4e-13 49.9 1.7 5e-13 49.4 1.7 1.2 1 0 0 1 1 1 1 Trm112p-like protein zf-RING_7 PF02591.15 gi|320100364|ref|YP_004175956.1| - 0.014 15.5 1.2 0.049 13.8 1.2 2.0 1 1 0 1 1 1 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|320100364|ref|YP_004175956.1| - 0.047 13.1 4.3 1.4 8.4 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-RRPl_C4 PF17026.5 gi|320100364|ref|YP_004175956.1| - 0.11 12.5 2.7 0.35 11.0 0.1 2.1 1 1 1 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type DZR PF12773.7 gi|320100364|ref|YP_004175956.1| - 0.51 10.4 7.3 1.7 8.7 7.3 1.8 1 1 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.12 gi|320100364|ref|YP_004175956.1| - 2.3 8.2 6.1 11 6.1 0.2 2.7 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zinc_ribbon_15 PF17032.5 gi|320100364|ref|YP_004175956.1| - 2.6 8.9 8.1 7.8 7.3 8.1 1.8 1 1 0 1 1 1 0 zinc-ribbon family Amidohydro_1 PF01979.20 gi|320100365|ref|YP_004175957.1| - 2.2e-46 158.7 0.0 2.6e-46 158.5 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|320100365|ref|YP_004175957.1| - 4.2e-18 66.1 0.0 4.4e-14 52.8 0.1 2.3 2 1 0 2 2 2 2 Amidohydrolase family E1-E2_ATPase PF00122.20 gi|320100366|ref|YP_004175958.1| - 6.8e-50 169.1 1.1 6.8e-50 169.1 1.1 2.7 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|320100366|ref|YP_004175958.1| - 9.6e-27 94.6 0.0 1.9e-26 93.7 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|320100366|ref|YP_004175958.1| - 1.6e-09 37.9 0.1 4.2e-06 26.7 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|320100366|ref|YP_004175958.1| - 1.8e-09 37.2 0.0 5.4e-09 35.6 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase_C PF00689.21 gi|320100366|ref|YP_004175958.1| - 0.00012 21.8 8.7 0.00012 21.8 8.7 2.3 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus EamA PF00892.20 gi|320100367|ref|YP_004175959.1| - 1.5e-24 86.7 38.6 3.9e-13 49.7 15.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family AA_kinase PF00696.28 gi|320100368|ref|YP_004175960.1| - 2.3e-29 102.7 0.0 3.4e-29 102.2 0.0 1.3 1 1 0 1 1 1 1 Amino acid kinase family ABC_tran PF00005.27 gi|320100369|ref|YP_004175961.1| - 4e-19 69.5 0.0 5.1e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100369|ref|YP_004175961.1| - 2.8e-09 37.2 0.0 0.00074 19.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100369|ref|YP_004175961.1| - 6.7e-08 32.2 0.0 3.9e-07 29.7 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|320100369|ref|YP_004175961.1| - 0.0015 18.3 0.0 0.0062 16.2 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|320100369|ref|YP_004175961.1| - 0.0044 16.8 0.0 0.15 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|320100369|ref|YP_004175961.1| - 0.014 15.3 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|320100369|ref|YP_004175961.1| - 0.017 15.2 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|320100369|ref|YP_004175961.1| - 0.018 14.6 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|320100369|ref|YP_004175961.1| - 0.018 13.7 0.0 0.96 8.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|320100369|ref|YP_004175961.1| - 0.019 15.4 0.0 0.029 14.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|320100369|ref|YP_004175961.1| - 0.022 15.2 0.0 0.076 13.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|320100369|ref|YP_004175961.1| - 0.032 14.7 0.0 0.05 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|320100369|ref|YP_004175961.1| - 0.039 13.7 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|320100369|ref|YP_004175961.1| - 0.065 13.1 0.1 0.15 12.0 0.0 1.7 1 1 1 2 2 2 0 NACHT domain MMR_HSR1 PF01926.23 gi|320100369|ref|YP_004175961.1| - 0.078 13.1 0.0 0.19 11.8 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|320100369|ref|YP_004175961.1| - 0.1 12.9 0.0 0.45 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|320100369|ref|YP_004175961.1| - 0.21 11.3 0.1 0.75 9.5 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein UPF0051 PF01458.17 gi|320100370|ref|YP_004175962.1| - 7.8e-67 225.1 0.4 9.7e-67 224.8 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|320100371|ref|YP_004175963.1| - 1.5e-19 70.6 0.0 2e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Pea-VEAacid PF08111.11 gi|320100371|ref|YP_004175963.1| - 0.11 12.9 0.1 0.63 10.5 0.0 2.4 2 0 0 2 2 2 0 Pea-VEAacid family WhiA_N PF10298.9 gi|320100372|ref|YP_004175964.1| - 0.076 13.1 0.0 0.094 12.8 0.0 1.2 1 0 0 1 1 1 0 WhiA N-terminal LAGLIDADG-like domain DUF1131 PF06572.12 gi|320100372|ref|YP_004175964.1| - 0.15 11.8 0.0 0.16 11.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1131) AdoMet_dc PF02675.15 gi|320100373|ref|YP_004175965.1| - 7.2e-35 119.5 0.0 8.1e-35 119.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DUF935 PF06074.12 gi|320100373|ref|YP_004175965.1| - 0.19 10.4 0.0 0.22 10.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF935) Lycopene_cycl PF05834.12 gi|320100374|ref|YP_004175966.1| - 1.9e-08 33.8 0.0 3.1e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.24 gi|320100374|ref|YP_004175966.1| - 7e-06 25.9 1.1 0.00041 20.0 0.2 2.1 1 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|320100374|ref|YP_004175966.1| - 0.00014 21.3 0.1 0.0002 20.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|320100374|ref|YP_004175966.1| - 0.00087 18.6 0.0 0.0027 17.0 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|320100374|ref|YP_004175966.1| - 0.0038 16.5 0.1 0.0065 15.7 0.1 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|320100374|ref|YP_004175966.1| - 0.0071 16.6 0.1 0.027 14.7 0.1 2.0 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|320100374|ref|YP_004175966.1| - 0.015 14.5 0.2 0.026 13.8 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|320100374|ref|YP_004175966.1| - 0.054 12.2 0.1 0.085 11.5 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein FAD_binding_2 PF00890.24 gi|320100374|ref|YP_004175966.1| - 0.23 10.5 0.5 0.54 9.3 0.1 1.8 2 0 0 2 2 2 0 FAD binding domain Gln-synt_C PF00120.24 gi|320100375|ref|YP_004175967.1| - 1.9e-88 296.8 0.0 2.4e-88 296.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|320100375|ref|YP_004175967.1| - 1e-09 38.0 0.0 2.3e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain HTH_24 PF13412.6 gi|320100376|ref|YP_004175968.1| - 7.2e-16 57.5 0.3 1.2e-15 56.8 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|320100376|ref|YP_004175968.1| - 9.6e-15 54.3 0.3 1.7e-14 53.5 0.3 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|320100376|ref|YP_004175968.1| - 2.5e-13 49.6 2.7 4e-13 49.0 2.7 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|320100376|ref|YP_004175968.1| - 1.3e-05 24.9 0.1 2.2e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|320100376|ref|YP_004175968.1| - 4e-05 23.4 0.1 7e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|320100376|ref|YP_004175968.1| - 0.00016 21.3 0.1 0.00031 20.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|320100376|ref|YP_004175968.1| - 0.0002 21.0 0.1 0.00039 20.1 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.6 gi|320100376|ref|YP_004175968.1| - 0.00078 19.9 0.1 0.002 18.5 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|320100376|ref|YP_004175968.1| - 0.00094 19.2 0.1 0.0017 18.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|320100376|ref|YP_004175968.1| - 0.00096 19.5 0.0 0.0017 18.7 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor Sigma70_r4 PF04545.16 gi|320100376|ref|YP_004175968.1| - 0.0014 18.1 1.0 0.0025 17.3 1.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|320100376|ref|YP_004175968.1| - 0.0031 17.3 0.1 0.0054 16.6 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|320100376|ref|YP_004175968.1| - 0.009 15.9 0.1 0.022 14.7 0.1 1.7 2 0 0 2 2 2 1 HTH domain RuvB_C PF05491.13 gi|320100376|ref|YP_004175968.1| - 0.015 15.1 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain MarR PF01047.22 gi|320100376|ref|YP_004175968.1| - 0.022 14.7 0.0 0.048 13.6 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF4777 PF16007.5 gi|320100376|ref|YP_004175968.1| - 0.025 14.8 0.0 0.091 13.0 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) HTH_50 PF18024.1 gi|320100376|ref|YP_004175968.1| - 0.032 13.9 0.1 0.065 12.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|320100376|ref|YP_004175968.1| - 0.035 13.8 0.3 0.079 12.6 0.3 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 AsnC_trans_reg2 PF17805.1 gi|320100376|ref|YP_004175968.1| - 0.059 13.5 0.1 0.13 12.4 0.0 1.7 2 0 0 2 2 2 0 AsnC-like ligand binding domain HTH_5 PF01022.20 gi|320100376|ref|YP_004175968.1| - 0.064 13.1 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_47 PF16221.5 gi|320100376|ref|YP_004175968.1| - 0.075 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 winged helix-turn-helix Fe_dep_repress PF01325.19 gi|320100376|ref|YP_004175968.1| - 0.12 12.5 0.0 0.27 11.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Fer4_20 PF14691.6 gi|320100377|ref|YP_004175969.1| - 3.6e-42 142.7 0.1 5.4e-42 142.1 0.1 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|320100377|ref|YP_004175969.1| - 1.5e-39 136.0 0.0 2.4e-39 135.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|320100377|ref|YP_004175969.1| - 7.5e-16 58.5 3.4 5.9e-08 33.2 0.2 3.4 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|320100377|ref|YP_004175969.1| - 2e-12 47.0 0.9 0.00028 20.3 0.0 3.8 3 1 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|320100377|ref|YP_004175969.1| - 2.7e-09 37.1 0.3 1.1e-08 35.1 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|320100377|ref|YP_004175969.1| - 5.9e-08 32.3 0.0 0.004 16.5 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|320100377|ref|YP_004175969.1| - 9.7e-06 24.5 0.4 0.00015 20.6 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|320100377|ref|YP_004175969.1| - 1.5e-05 24.5 0.2 0.0022 17.4 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|320100377|ref|YP_004175969.1| - 4.1e-05 23.0 0.2 0.00017 21.0 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|320100377|ref|YP_004175969.1| - 6.5e-05 22.2 5.1 0.00016 20.9 0.3 2.9 2 1 1 3 3 3 1 FAD binding domain Amino_oxidase PF01593.24 gi|320100377|ref|YP_004175969.1| - 0.00031 20.2 0.5 0.0066 15.8 0.1 2.6 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|320100377|ref|YP_004175969.1| - 0.00038 20.9 0.1 0.59 10.6 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding Thi4 PF01946.17 gi|320100377|ref|YP_004175969.1| - 0.00053 19.3 0.8 0.00086 18.6 0.1 1.7 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|320100377|ref|YP_004175969.1| - 0.00061 19.0 1.0 0.027 13.6 0.2 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A F420_oxidored PF03807.17 gi|320100377|ref|YP_004175969.1| - 0.00068 20.2 0.1 0.2 12.3 0.0 2.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.24 gi|320100377|ref|YP_004175969.1| - 0.0022 17.6 0.6 0.043 13.4 0.1 2.8 3 0 0 3 3 3 1 FAD dependent oxidoreductase IlvN PF07991.12 gi|320100377|ref|YP_004175969.1| - 0.0056 16.3 0.0 0.16 11.6 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain YjeF_N PF03853.15 gi|320100377|ref|YP_004175969.1| - 0.0077 16.1 0.0 0.93 9.4 0.0 2.3 2 0 0 2 2 2 1 YjeF-related protein N-terminus 2-Hacid_dh_C PF02826.19 gi|320100377|ref|YP_004175969.1| - 0.0087 15.4 0.1 0.68 9.3 0.0 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|320100377|ref|YP_004175969.1| - 0.019 15.0 0.5 5.3 7.1 0.0 3.3 4 0 0 4 4 3 0 Shikimate / quinate 5-dehydrogenase K_oxygenase PF13434.6 gi|320100377|ref|YP_004175969.1| - 0.037 13.2 0.0 1.5 7.9 0.0 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.18 gi|320100377|ref|YP_004175969.1| - 0.042 14.1 0.1 6.9 7.0 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain Trp_halogenase PF04820.14 gi|320100377|ref|YP_004175969.1| - 0.071 11.9 1.1 0.09 11.6 0.1 1.6 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|320100377|ref|YP_004175969.1| - 0.15 12.0 2.9 0.2 11.7 0.2 2.4 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|320100377|ref|YP_004175969.1| - 0.2 10.7 0.2 0.36 9.8 0.2 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_10 PF13237.6 gi|320100377|ref|YP_004175969.1| - 0.45 10.7 3.1 0.86 9.8 3.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain DHODB_Fe-S_bind PF10418.9 gi|320100378|ref|YP_004175970.1| - 1.6e-12 47.0 3.2 5e-12 45.4 3.1 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|320100378|ref|YP_004175970.1| - 5.3e-05 23.5 0.0 8.7e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_1 PF00175.21 gi|320100378|ref|YP_004175970.1| - 0.00073 20.2 0.0 0.0018 18.9 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_3 PF13085.6 gi|320100378|ref|YP_004175970.1| - 0.067 13.2 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DUF815 PF05673.13 gi|320100378|ref|YP_004175970.1| - 0.18 10.9 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Rep_1B PF17873.1 gi|320100378|ref|YP_004175970.1| - 8.4 6.4 9.7 2 8.3 4.6 2.5 2 1 0 2 2 2 0 Replicase polyprotein 1ab CBS PF00571.28 gi|320100379|ref|YP_004175971.1| - 6.2e-47 157.9 12.9 3.3e-14 53.0 0.8 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|320100380|ref|YP_004175972.1| - 1.2e-30 105.7 1.9 2e-08 34.6 0.0 4.2 4 0 0 4 4 4 4 CBS domain Mut7-C PF01927.16 gi|320100381|ref|YP_004175973.1| - 1.6e-44 151.5 0.0 1.9e-44 151.3 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|320100381|ref|YP_004175973.1| - 2.5e-05 23.9 0.0 4.1e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) zf_CopZ PF18423.1 gi|320100381|ref|YP_004175973.1| - 0.081 12.9 0.1 0.16 11.9 0.1 1.5 1 0 0 1 1 1 0 Zinc binding domain AMMECR1 PF01871.17 gi|320100382|ref|YP_004175974.1| - 2.8e-45 153.9 0.0 3.3e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 NAD_synthase PF02540.17 gi|320100383|ref|YP_004175975.1| - 9.2e-71 237.8 0.0 1.1e-70 237.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|320100383|ref|YP_004175975.1| - 4.3e-05 22.5 0.0 0.0012 17.8 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|320100383|ref|YP_004175975.1| - 0.046 13.2 0.0 0.18 11.3 0.0 1.8 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ABC_cobalt PF09819.9 gi|320100385|ref|YP_004175977.1| - 8.9e-35 119.4 9.3 8.9e-35 119.4 9.3 1.9 2 0 0 2 2 2 1 ABC-type cobalt transport system, permease component TatD_DNase PF01026.21 gi|320100386|ref|YP_004175978.1| - 3e-19 69.4 0.0 3.5e-19 69.2 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase zf-B_box PF00643.24 gi|320100387|ref|YP_004175979.1| - 2.1e-06 27.8 25.7 0.0034 17.5 8.2 3.9 2 1 2 4 4 4 3 B-box zinc finger zf-HIT PF04438.16 gi|320100387|ref|YP_004175979.1| - 0.0001 22.1 4.8 0.0001 22.1 4.8 4.7 2 1 1 3 3 3 1 HIT zinc finger zf-AN1 PF01428.16 gi|320100387|ref|YP_004175979.1| - 0.079 13.1 1.7 0.079 13.1 1.7 4.1 1 1 3 4 4 4 0 AN1-like Zinc finger FYVE PF01363.21 gi|320100387|ref|YP_004175979.1| - 0.26 11.5 32.8 3.5 7.8 6.2 4.1 1 1 1 2 2 2 0 FYVE zinc finger zf-CHY PF05495.12 gi|320100387|ref|YP_004175979.1| - 4.5 7.8 25.5 7e+02 0.8 25.5 2.5 1 1 0 1 1 1 0 CHY zinc finger AIRS_C PF02769.22 gi|320100388|ref|YP_004175980.1| - 4.3e-17 62.7 1.4 8.3e-17 61.7 1.4 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|320100388|ref|YP_004175980.1| - 1.1e-12 48.4 1.0 5.5e-12 46.2 0.3 2.1 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Syntaxin-6_N PF09177.11 gi|320100389|ref|YP_004175981.1| - 0.032 14.8 0.1 7.1 7.3 0.0 2.1 2 0 0 2 2 2 0 Syntaxin 6, N-terminal DNA_gyraseA_C PF03989.13 gi|320100389|ref|YP_004175981.1| - 0.048 13.1 0.1 0.12 11.8 0.1 1.7 1 0 0 1 1 1 0 DNA gyrase C-terminal domain, beta-propeller Snf7 PF03357.21 gi|320100390|ref|YP_004175982.1| - 0.00066 19.3 1.9 0.0018 17.9 1.9 1.8 1 1 0 1 1 1 1 Snf7 DUF4125 PF13526.6 gi|320100390|ref|YP_004175982.1| - 0.027 14.1 0.7 0.044 13.4 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4125) Sigma70_r4_2 PF08281.12 gi|320100390|ref|YP_004175982.1| - 0.051 13.3 0.3 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 DUF5388 PF17363.2 gi|320100390|ref|YP_004175982.1| - 0.059 13.6 0.1 0.13 12.4 0.1 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5388) HisK_N PF09385.10 gi|320100390|ref|YP_004175982.1| - 0.1 12.6 0.8 0.2 11.6 0.8 1.4 1 0 0 1 1 1 0 Histidine kinase N terminal LOH1CR12 PF10158.9 gi|320100390|ref|YP_004175982.1| - 0.15 12.1 0.9 0.35 10.9 0.4 1.9 2 0 0 2 2 2 0 Tumour suppressor protein DUF2175 PF09943.9 gi|320100390|ref|YP_004175982.1| - 1.2 9.5 3.7 1.4 9.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2175) GCH_III PF05165.12 gi|320100392|ref|YP_004175984.1| - 0.0012 18.1 0.0 0.12 11.6 0.0 2.1 1 1 1 2 2 2 2 GTP cyclohydrolase III SIS PF01380.22 gi|320100393|ref|YP_004175985.1| - 4.2e-41 139.9 0.6 1.7e-26 92.6 0.7 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|320100393|ref|YP_004175985.1| - 1.3e-13 51.3 0.0 2.6e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|320100393|ref|YP_004175985.1| - 2.4e-11 43.6 0.0 5.9e-11 42.3 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|320100393|ref|YP_004175985.1| - 0.00094 19.2 1.3 0.002 18.2 0.9 1.7 1 1 0 1 1 1 1 SIS domain GATase_4 PF13230.6 gi|320100393|ref|YP_004175985.1| - 0.01 14.7 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II tRNA-synt_1b PF00579.25 gi|320100394|ref|YP_004175986.1| - 3.5e-46 157.9 0.0 7.8e-46 156.7 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|320100394|ref|YP_004175986.1| - 0.058 12.3 0.0 0.25 10.2 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) HSP20 PF00011.21 gi|320100395|ref|YP_004175987.1| - 0.0012 19.0 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|320100395|ref|YP_004175987.1| - 0.0063 16.1 0.0 0.021 14.4 0.0 1.8 1 1 1 2 2 2 1 HSP20-like domain found in ArsA PAC2 PF09754.9 gi|320100396|ref|YP_004175988.1| - 2.6e-31 109.3 0.1 3.1e-31 109.1 0.1 1.1 1 0 0 1 1 1 1 PAC2 family DNase-RNase PF02577.14 gi|320100396|ref|YP_004175988.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Bifunctional nuclease DUF2153 PF09921.9 gi|320100397|ref|YP_004175989.1| - 5e-50 168.4 2.8 5.9e-50 168.2 2.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) VPR PF00522.18 gi|320100397|ref|YP_004175989.1| - 0.12 12.4 1.4 0.75 9.9 0.2 2.4 1 1 1 2 2 2 0 VPR/VPX protein DapH_N PF08503.10 gi|320100398|ref|YP_004175990.1| - 0.0064 16.7 0.0 0.0098 16.1 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate succinyltransferase N-terminal TIP49 PF06068.13 gi|320100400|ref|YP_004175992.1| - 6.7e-142 472.8 0.8 9.8e-142 472.3 0.8 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|320100400|ref|YP_004175992.1| - 3.2e-27 94.5 1.6 1.3e-26 92.5 1.3 2.3 2 0 0 2 2 1 1 TIP49 AAA-lid domain AAA PF00004.29 gi|320100400|ref|YP_004175992.1| - 2e-12 47.7 2.0 4.7e-09 36.8 0.1 2.9 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|320100400|ref|YP_004175992.1| - 2.6e-09 37.0 0.8 8.9e-07 28.8 0.1 2.9 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|320100400|ref|YP_004175992.1| - 7.5e-08 32.7 0.2 0.00038 20.7 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_16 PF13191.6 gi|320100400|ref|YP_004175992.1| - 5.8e-07 30.1 1.1 6.7e-06 26.6 1.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|320100400|ref|YP_004175992.1| - 3.7e-05 23.7 0.1 0.00025 21.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|320100400|ref|YP_004175992.1| - 0.00014 22.4 0.0 0.00051 20.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain TFIID-31kDa PF02291.15 gi|320100400|ref|YP_004175992.1| - 0.00015 21.8 0.3 0.036 14.1 0.1 2.5 3 0 0 3 3 2 1 Transcription initiation factor IID, 31kD subunit AAA_7 PF12775.7 gi|320100400|ref|YP_004175992.1| - 0.00018 21.1 0.0 0.0023 17.5 0.0 2.2 2 1 0 2 2 2 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|320100400|ref|YP_004175992.1| - 0.00028 20.5 0.7 0.0015 18.1 0.2 2.1 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|320100400|ref|YP_004175992.1| - 0.0005 19.5 0.6 0.002 17.5 0.1 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DnaB_C PF03796.15 gi|320100400|ref|YP_004175992.1| - 0.00059 19.3 0.0 0.002 17.5 0.0 1.8 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|320100400|ref|YP_004175992.1| - 0.0007 19.4 0.1 0.0015 18.3 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.6 gi|320100400|ref|YP_004175992.1| - 0.0015 18.8 1.6 0.03 14.7 1.6 2.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|320100400|ref|YP_004175992.1| - 0.004 17.4 0.1 0.015 15.6 0.1 2.0 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|320100400|ref|YP_004175992.1| - 0.0043 17.2 0.1 0.0089 16.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|320100400|ref|YP_004175992.1| - 0.0052 16.5 0.2 0.19 11.5 0.1 2.3 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|320100400|ref|YP_004175992.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain PhoH PF02562.16 gi|320100400|ref|YP_004175992.1| - 0.016 14.7 0.1 0.033 13.6 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_17 PF13207.6 gi|320100400|ref|YP_004175992.1| - 0.017 15.6 0.1 0.099 13.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|320100400|ref|YP_004175992.1| - 0.019 15.4 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.6 gi|320100400|ref|YP_004175992.1| - 0.025 14.4 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|320100400|ref|YP_004175992.1| - 0.026 13.8 0.0 0.056 12.7 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|320100400|ref|YP_004175992.1| - 0.026 13.8 0.0 0.055 12.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.26 gi|320100400|ref|YP_004175992.1| - 0.027 14.2 0.4 0.46 10.2 0.0 2.6 3 0 0 3 3 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|320100400|ref|YP_004175992.1| - 0.041 14.4 0.0 0.083 13.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter TsaE PF02367.17 gi|320100400|ref|YP_004175992.1| - 0.044 13.8 0.0 0.092 12.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ResIII PF04851.15 gi|320100400|ref|YP_004175992.1| - 0.053 13.5 0.1 0.56 10.2 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_2 PF07724.14 gi|320100400|ref|YP_004175992.1| - 0.055 13.6 0.1 0.19 11.8 0.0 2.0 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) AAA_24 PF13479.6 gi|320100400|ref|YP_004175992.1| - 0.063 13.0 0.1 0.6 9.8 0.1 2.5 3 0 0 3 3 3 0 AAA domain AAA_32 PF13654.6 gi|320100400|ref|YP_004175992.1| - 0.088 11.6 1.3 7.6 5.2 0.3 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|320100400|ref|YP_004175992.1| - 0.13 12.3 0.0 2.9 7.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.17 gi|320100400|ref|YP_004175992.1| - 0.13 11.4 0.1 0.37 9.8 0.0 1.8 2 1 0 2 2 2 0 Parvovirus non-structural protein NS1 PCP_red PF08369.10 gi|320100400|ref|YP_004175992.1| - 2.2 8.6 4.8 0.94 9.7 0.2 2.9 3 0 0 3 3 2 0 Proto-chlorophyllide reductase 57 kD subunit Pyridoxal_deC PF00282.19 gi|320100401|ref|YP_004175993.1| - 7.4e-22 77.6 0.0 4.1e-21 75.1 0.0 2.1 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|320100401|ref|YP_004175993.1| - 2.8e-12 46.3 0.0 6.5e-11 41.8 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|320100401|ref|YP_004175993.1| - 5.3e-11 42.3 0.0 1.7e-10 40.7 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|320100401|ref|YP_004175993.1| - 1.4e-10 40.9 0.0 0.00027 20.2 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|320100401|ref|YP_004175993.1| - 3.5e-05 23.3 0.0 6.2e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SepSecS PF05889.13 gi|320100401|ref|YP_004175993.1| - 0.077 11.7 0.0 0.18 10.4 0.0 1.7 1 1 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS OKR_DC_1 PF01276.20 gi|320100401|ref|YP_004175993.1| - 0.14 10.8 0.0 0.27 9.9 0.0 1.6 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain RIO1 PF01163.22 gi|320100402|ref|YP_004175994.1| - 3.4e-44 150.7 0.0 4.9e-44 150.2 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|320100402|ref|YP_004175994.1| - 1.8e-21 76.2 0.6 3.6e-21 75.2 0.6 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|320100402|ref|YP_004175994.1| - 1.2e-07 31.9 0.1 0.0012 18.8 0.0 2.4 2 1 1 3 3 3 2 Phosphotransferase enzyme family WaaY PF06176.11 gi|320100402|ref|YP_004175994.1| - 0.0018 18.0 0.0 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_fungal PF17667.1 gi|320100402|ref|YP_004175994.1| - 0.0062 15.4 0.0 0.0074 15.1 0.0 1.1 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 gi|320100402|ref|YP_004175994.1| - 0.018 14.4 0.0 0.24 10.7 0.0 2.1 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|320100402|ref|YP_004175994.1| - 0.02 14.3 0.0 0.076 12.4 0.0 1.8 1 1 0 1 1 1 0 Protein kinase domain Fructosamin_kin PF03881.14 gi|320100402|ref|YP_004175994.1| - 0.032 13.5 0.0 0.17 11.1 0.0 2.0 2 0 0 2 2 2 0 Fructosamine kinase DUF460 PF04312.13 gi|320100403|ref|YP_004175995.1| - 1.7e-44 151.0 0.4 3.2e-44 150.0 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) DUF641 PF04859.12 gi|320100403|ref|YP_004175995.1| - 0.003 17.9 0.8 0.017 15.4 0.2 2.3 1 1 1 2 2 2 1 Plant protein of unknown function (DUF641) Spc29 PF17082.5 gi|320100403|ref|YP_004175995.1| - 0.0064 16.4 0.6 0.017 15.0 0.6 1.7 1 0 0 1 1 1 1 Spindle Pole Component 29 Fib_alpha PF08702.10 gi|320100403|ref|YP_004175995.1| - 0.0097 16.1 0.9 0.028 14.6 0.0 2.1 3 0 0 3 3 3 1 Fibrinogen alpha/beta chain family DUF4686 PF15742.5 gi|320100403|ref|YP_004175995.1| - 0.012 14.8 1.1 0.024 13.8 1.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4686) DUF2229 PF09989.9 gi|320100403|ref|YP_004175995.1| - 0.015 14.9 0.2 0.031 13.9 0.2 1.5 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) TMF_DNA_bd PF12329.8 gi|320100403|ref|YP_004175995.1| - 0.027 14.4 2.7 6.1 6.9 0.1 2.9 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF16 PF01519.16 gi|320100403|ref|YP_004175995.1| - 0.038 14.5 0.2 0.34 11.4 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|320100403|ref|YP_004175995.1| - 0.16 12.3 1.5 0.38 11.1 0.5 2.2 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tropomyosin_1 PF12718.7 gi|320100403|ref|YP_004175995.1| - 1 9.5 5.0 0.15 12.2 0.5 1.8 2 0 0 2 2 2 0 Tropomyosin like DUF1192 PF06698.11 gi|320100403|ref|YP_004175995.1| - 1.9 8.6 4.8 1.7 8.8 0.9 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) PKcGMP_CC PF16808.5 gi|320100403|ref|YP_004175995.1| - 6.4 6.7 7.8 2.8 7.9 1.8 3.1 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase ZapB PF06005.12 gi|320100403|ref|YP_004175995.1| - 9 6.8 8.0 0.53 10.8 0.2 2.8 4 0 0 4 4 3 0 Cell division protein ZapB AdoMet_Synthase PF01941.19 gi|320100404|ref|YP_004175996.1| - 1.5e-170 567.3 0.9 1.7e-170 567.1 0.9 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) FbpA PF05833.11 gi|320100405|ref|YP_004175997.1| - 8.5e-32 110.5 0.0 1.2e-31 110.0 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|320100405|ref|YP_004175997.1| - 2.9e-22 79.4 0.0 7e-22 78.1 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain DUF16 PF01519.16 gi|320100405|ref|YP_004175997.1| - 0.012 16.0 3.2 0.017 15.6 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF16 DUF1664 PF07889.12 gi|320100405|ref|YP_004175997.1| - 0.033 14.2 4.1 0.38 10.8 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) OmpH PF03938.14 gi|320100405|ref|YP_004175997.1| - 0.048 14.0 3.5 0.21 11.9 0.4 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Phage_NinH PF06322.11 gi|320100405|ref|YP_004175997.1| - 0.072 13.0 0.1 17 5.4 0.0 2.7 2 0 0 2 2 2 0 Phage NinH protein Cast PF10174.9 gi|320100405|ref|YP_004175997.1| - 0.12 10.5 3.5 0.26 9.5 2.4 1.8 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone NPV_P10 PF05531.12 gi|320100405|ref|YP_004175997.1| - 0.25 11.8 0.3 5.1 7.6 0.0 2.5 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein FmiP_Thoc5 PF09766.9 gi|320100405|ref|YP_004175997.1| - 0.4 9.9 1.6 1.9 7.7 0.6 2.0 2 0 0 2 2 2 0 Fms-interacting protein/Thoc5 Phage_Mu_Gam PF07352.12 gi|320100405|ref|YP_004175997.1| - 0.45 10.4 3.0 0.61 10.0 1.3 1.9 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein ASD2 PF08687.11 gi|320100405|ref|YP_004175997.1| - 0.7 9.4 4.3 0.18 11.3 0.9 1.6 2 0 0 2 2 2 0 Apx/Shroom domain ASD2 CREPT PF16566.5 gi|320100405|ref|YP_004175997.1| - 1.3 9.2 3.6 1.3 9.2 0.7 2.1 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Spc7 PF08317.11 gi|320100405|ref|YP_004175997.1| - 3.2 6.6 5.4 3.7 6.4 0.4 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein DASH_Spc19 PF08287.11 gi|320100405|ref|YP_004175997.1| - 3.8 7.4 5.6 3.7 7.4 0.5 2.2 2 0 0 2 2 2 0 Spc19 DUF3523 PF12037.8 gi|320100405|ref|YP_004175997.1| - 4.3 6.7 8.3 0.29 10.5 1.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3523) THOC7 PF05615.13 gi|320100405|ref|YP_004175997.1| - 4.9 7.4 8.3 19 5.5 0.2 2.6 2 1 0 2 2 2 0 Tho complex subunit 7 TMF_DNA_bd PF12329.8 gi|320100405|ref|YP_004175997.1| - 9.8 6.3 6.9 3.2 7.8 0.9 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding RNA_Me_trans PF04252.13 gi|320100407|ref|YP_004175999.1| - 1.1e-39 136.1 0.0 1.3e-39 135.9 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase zf_C2H2_13 PF18508.1 gi|320100407|ref|YP_004175999.1| - 0.18 11.4 0.1 4.1 7.1 0.0 2.5 2 0 0 2 2 2 0 Zinc finger domain Tudor-knot PF11717.8 gi|320100407|ref|YP_004175999.1| - 0.2 11.6 0.9 0.28 11.1 0.2 1.6 2 0 0 2 2 2 0 RNA binding activity-knot of a chromodomain APS_kinase PF01583.20 gi|320100408|ref|YP_004176000.1| - 0.12 12.3 0.1 12 5.8 0.0 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase NucS PF01939.16 gi|320100409|ref|YP_004176001.1| - 2.2e-50 171.1 0.1 2.8e-50 170.8 0.1 1.1 1 0 0 1 1 1 1 Endonuclease NucS Methyltransf_11 PF08241.12 gi|320100410|ref|YP_004176002.1| - 1.3e-16 61.0 0.0 2.7e-16 60.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|320100410|ref|YP_004176002.1| - 2.7e-14 53.6 0.0 1.1e-13 51.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|320100410|ref|YP_004176002.1| - 1.4e-08 34.8 0.0 1.8e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|320100410|ref|YP_004176002.1| - 5.4e-08 33.5 0.0 1.4e-07 32.1 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|320100410|ref|YP_004176002.1| - 7.7e-07 29.0 0.0 1.1e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|320100410|ref|YP_004176002.1| - 0.00021 20.7 0.0 0.00026 20.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|320100410|ref|YP_004176002.1| - 0.0061 16.4 0.0 0.016 15.1 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|320100410|ref|YP_004176002.1| - 0.047 13.0 0.0 0.094 12.0 0.0 1.5 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase AdoMet_MTase PF07757.13 gi|320100410|ref|YP_004176002.1| - 0.11 12.9 0.1 0.19 12.1 0.1 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase LSM PF01423.22 gi|320100411|ref|YP_004176003.1| - 6.9e-18 64.1 0.0 7.9e-18 63.9 0.0 1.1 1 0 0 1 1 1 1 LSM domain LSM14 PF12701.7 gi|320100411|ref|YP_004176003.1| - 0.043 13.9 0.3 0.063 13.4 0.3 1.2 1 0 0 1 1 1 0 Scd6-like Sm domain Lactamase_B PF00753.27 gi|320100412|ref|YP_004176004.1| - 2.2e-11 44.1 1.3 2.8e-10 40.5 0.1 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|320100412|ref|YP_004176004.1| - 2.7e-09 36.8 0.0 7.7e-09 35.4 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|320100412|ref|YP_004176004.1| - 0.027 13.9 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Radical_SAM PF04055.21 gi|320100413|ref|YP_004176005.1| - 2.9e-09 37.5 0.0 9.3e-09 35.9 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily GATase PF00117.28 gi|320100413|ref|YP_004176005.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Radical_SAM PF04055.21 gi|320100414|ref|YP_004176006.1| - 1.7e-07 31.7 2.5 1.9e-05 25.1 0.6 3.0 2 1 0 2 2 2 1 Radical SAM superfamily BPL_LplA_LipB PF03099.19 gi|320100415|ref|YP_004176007.1| - 8.5e-12 45.1 0.0 1.4e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.9 gi|320100416|ref|YP_004176008.1| - 5.3e-07 29.5 0.1 1.2e-06 28.4 0.0 1.5 1 1 1 2 2 2 1 Bacterial lipoate protein ligase C-terminus Zip PF02535.22 gi|320100417|ref|YP_004176009.1| - 2.8e-11 43.3 7.2 2.8e-11 43.3 7.2 2.6 2 1 0 2 2 2 2 ZIP Zinc transporter ThrE PF06738.12 gi|320100417|ref|YP_004176009.1| - 0.054 12.9 7.4 0.3 10.4 2.9 2.5 2 0 0 2 2 2 0 Putative threonine/serine exporter MS_channel PF00924.18 gi|320100417|ref|YP_004176009.1| - 9.2 5.8 5.9 0.55 9.8 0.4 1.8 2 0 0 2 2 2 0 Mechanosensitive ion channel Nitro_FeMo-Co PF02579.17 gi|320100419|ref|YP_004176011.1| - 4.4e-21 75.0 0.0 5.1e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor FeoA PF04023.14 gi|320100420|ref|YP_004176012.1| - 1.5e-17 63.6 0.2 1.6e-17 63.5 0.2 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|320100421|ref|YP_004176013.1| - 9.8e-47 158.4 0.2 2e-46 157.3 0.2 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|320100421|ref|YP_004176013.1| - 2.2e-23 82.6 26.1 1.2e-18 67.5 7.2 3.2 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|320100421|ref|YP_004176013.1| - 9.3e-20 70.8 0.1 1.8e-19 69.9 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|320100421|ref|YP_004176013.1| - 1.8e-09 38.0 0.1 3.6e-09 37.0 0.1 1.4 1 0 0 1 1 1 1 FeoB cytosolic helical domain FeoB_C PF07664.12 gi|320100421|ref|YP_004176013.1| - 2.9e-05 23.7 0.5 2.9e-05 23.7 0.5 3.3 4 0 0 4 4 3 1 Ferrous iron transport protein B C terminus Ras PF00071.22 gi|320100421|ref|YP_004176013.1| - 0.00014 21.5 0.0 0.00027 20.6 0.0 1.4 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 gi|320100421|ref|YP_004176013.1| - 0.00028 20.4 0.1 0.00058 19.4 0.1 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|320100421|ref|YP_004176013.1| - 0.00061 19.4 0.1 0.0034 16.9 0.1 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|320100421|ref|YP_004176013.1| - 0.0011 18.5 0.1 0.0023 17.4 0.1 1.6 1 1 0 1 1 1 1 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|320100421|ref|YP_004176013.1| - 0.0065 16.4 0.8 3.5 7.5 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase Roc PF08477.13 gi|320100421|ref|YP_004176013.1| - 0.018 15.3 0.0 0.032 14.5 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase SRP54 PF00448.22 gi|320100421|ref|YP_004176013.1| - 0.034 13.8 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Gtr1_RagA PF04670.12 gi|320100421|ref|YP_004176013.1| - 0.037 13.4 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region IIGP PF05049.13 gi|320100421|ref|YP_004176013.1| - 0.1 11.7 0.1 0.15 11.0 0.1 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) PhoU PF01895.19 gi|320100422|ref|YP_004176014.1| - 1.9e-09 37.8 2.0 2.8e-08 34.1 0.4 2.5 2 0 0 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|320100422|ref|YP_004176014.1| - 4.6e-08 32.8 0.0 1.3e-06 28.2 0.0 2.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Phe_tRNA-synt_N PF02912.18 gi|320100422|ref|YP_004176014.1| - 0.087 12.8 0.0 0.74 9.8 0.0 2.4 3 0 0 3 3 3 0 Aminoacyl tRNA synthetase class II, N-terminal domain PBP_like_2 PF12849.7 gi|320100423|ref|YP_004176015.1| - 7.4e-54 183.3 0.0 9.7e-54 182.9 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|320100423|ref|YP_004176015.1| - 1.1e-06 28.8 0.2 4.3e-06 26.9 0.0 1.9 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|320100423|ref|YP_004176015.1| - 3.7e-05 22.9 0.0 0.00026 20.2 0.0 2.1 1 1 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.22 gi|320100424|ref|YP_004176016.1| - 1.2e-05 25.2 20.8 1.2e-05 25.2 20.8 2.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|320100425|ref|YP_004176017.1| - 2.2e-11 43.8 12.6 2.2e-11 43.8 12.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|320100426|ref|YP_004176018.1| - 1e-29 103.8 0.0 1.3e-29 103.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100426|ref|YP_004176018.1| - 4.8e-12 46.3 0.1 3.6e-06 27.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100426|ref|YP_004176018.1| - 1.8e-07 30.8 0.0 0.00056 19.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|320100426|ref|YP_004176018.1| - 0.00014 22.1 0.0 0.00041 20.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|320100426|ref|YP_004176018.1| - 0.00038 20.1 0.1 0.00089 19.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Adeno_IVa2 PF02456.15 gi|320100426|ref|YP_004176018.1| - 0.00046 19.1 0.1 0.0012 17.8 0.1 1.5 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_15 PF13175.6 gi|320100426|ref|YP_004176018.1| - 0.00053 19.8 0.0 0.068 12.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|320100426|ref|YP_004176018.1| - 0.00079 19.4 0.1 0.0016 18.3 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|320100426|ref|YP_004176018.1| - 0.0027 18.1 0.0 0.0049 17.3 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|320100426|ref|YP_004176018.1| - 0.0062 16.3 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|320100426|ref|YP_004176018.1| - 0.0067 17.0 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|320100426|ref|YP_004176018.1| - 0.0095 15.9 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|320100426|ref|YP_004176018.1| - 0.024 14.1 0.0 2.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein Rad17 PF03215.15 gi|320100426|ref|YP_004176018.1| - 0.025 14.5 0.0 0.3 11.0 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain Kelch_5 PF13854.6 gi|320100426|ref|YP_004176018.1| - 0.026 14.5 0.0 0.064 13.3 0.0 1.6 1 0 0 1 1 1 0 Kelch motif AAA_24 PF13479.6 gi|320100426|ref|YP_004176018.1| - 0.033 13.9 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|320100426|ref|YP_004176018.1| - 0.059 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|320100426|ref|YP_004176018.1| - 0.071 13.7 0.0 0.15 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|320100426|ref|YP_004176018.1| - 0.11 12.5 0.0 0.27 11.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|320100426|ref|YP_004176018.1| - 0.17 11.8 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain PhoU PF01895.19 gi|320100427|ref|YP_004176019.1| - 6.6e-15 55.3 3.4 4.1e-08 33.6 1.0 2.2 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.16 gi|320100427|ref|YP_004176019.1| - 0.0057 16.0 0.1 0.01 15.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF47 Lipoprotein_2 PF00921.17 gi|320100427|ref|YP_004176019.1| - 0.058 13.0 0.0 0.084 12.4 0.0 1.1 1 0 0 1 1 1 0 Borrelia lipoprotein tRNA_SAD PF07973.14 gi|320100428|ref|YP_004176020.1| - 6.8e-12 45.3 0.1 1.2e-11 44.5 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|320100428|ref|YP_004176020.1| - 2e-09 36.5 0.1 3e-09 35.9 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) CTP_synth_N PF06418.14 gi|320100429|ref|YP_004176021.1| - 4.8e-120 399.8 0.1 6.7e-120 399.3 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|320100429|ref|YP_004176021.1| - 9.6e-45 152.7 0.0 2.2e-44 151.5 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|320100429|ref|YP_004176021.1| - 8.6e-12 45.3 0.0 1.7e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|320100429|ref|YP_004176021.1| - 0.0022 18.0 0.0 0.0032 17.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|320100429|ref|YP_004176021.1| - 0.02 14.1 0.0 0.16 11.1 0.0 2.0 2 0 0 2 2 2 0 Anion-transporting ATPase GATase_3 PF07685.14 gi|320100429|ref|YP_004176021.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Pribosyltran PF00156.27 gi|320100430|ref|YP_004176022.1| - 1.1e-21 77.0 0.0 1.3e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain BtpA PF03437.15 gi|320100431|ref|YP_004176023.1| - 1.4e-72 244.2 0.0 1.7e-72 244.0 0.0 1.1 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.20 gi|320100431|ref|YP_004176023.1| - 0.00015 20.7 0.2 0.00025 20.0 0.2 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Bac_luciferase PF00296.20 gi|320100431|ref|YP_004176023.1| - 0.066 12.6 0.0 3 7.2 0.0 2.4 2 1 0 2 2 2 0 Luciferase-like monooxygenase Nre_C PF04895.12 gi|320100431|ref|YP_004176023.1| - 0.088 12.7 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Archaeal Nre, C-terminal DUF1580 PF07618.11 gi|320100431|ref|YP_004176023.1| - 0.12 12.0 0.0 0.94 9.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1580) DUF3933 PF13069.6 gi|320100431|ref|YP_004176023.1| - 0.17 11.8 0.8 0.49 10.3 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3933) TFIIB PF00382.19 gi|320100432|ref|YP_004176024.1| - 5.1e-38 129.0 0.5 1.1e-19 70.3 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|320100432|ref|YP_004176024.1| - 4.3e-11 42.2 0.1 7.5e-11 41.4 0.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|320100432|ref|YP_004176024.1| - 3.5e-07 30.3 0.0 0.022 14.9 0.0 2.2 2 0 0 2 2 2 2 Cyclin, C-terminal domain HTH_Tnp_ISL3 PF13542.6 gi|320100432|ref|YP_004176024.1| - 9.8e-05 21.7 0.2 0.0023 17.3 0.0 2.7 2 1 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 TFIIB_C_1 PF18542.1 gi|320100432|ref|YP_004176024.1| - 0.00038 20.4 1.7 0.045 13.8 0.7 2.4 2 0 0 2 2 2 1 Transcription factor IIB C-terminal module 1 Sigma70_r4 PF04545.16 gi|320100432|ref|YP_004176024.1| - 0.00044 19.7 0.1 0.00044 19.7 0.1 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|320100432|ref|YP_004176024.1| - 0.013 15.1 1.2 0.059 13.1 0.1 2.7 3 1 1 4 4 4 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|320100432|ref|YP_004176024.1| - 0.02 14.7 0.4 0.075 12.9 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|320100432|ref|YP_004176024.1| - 0.028 14.2 0.2 0.18 11.6 0.0 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain RB_B PF01857.20 gi|320100432|ref|YP_004176024.1| - 0.035 14.1 0.0 0.059 13.4 0.0 1.3 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain HTH_3 PF01381.22 gi|320100432|ref|YP_004176024.1| - 0.081 13.0 0.4 2.1 8.5 0.0 3.0 2 1 1 3 3 3 0 Helix-turn-helix Rrf2 PF02082.20 gi|320100432|ref|YP_004176024.1| - 0.12 12.8 0.2 14 6.1 0.0 2.6 2 0 0 2 2 2 0 Transcriptional regulator Ribonucleas_3_3 PF14622.6 gi|320100432|ref|YP_004176024.1| - 0.12 12.6 0.1 0.25 11.5 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease-III-like OrfB_Zn_ribbon PF07282.11 gi|320100433|ref|YP_004176025.1| - 6.1e-22 77.3 0.1 1.3e-21 76.3 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|320100433|ref|YP_004176025.1| - 0.00014 21.3 1.2 0.03 13.8 0.1 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|320100433|ref|YP_004176025.1| - 0.011 15.7 2.3 0.018 15.1 1.3 1.7 2 0 0 2 2 2 0 Double zinc ribbon OrfB_IS605 PF01385.19 gi|320100433|ref|YP_004176025.1| - 0.013 15.8 0.8 0.025 14.8 0.8 1.5 1 0 0 1 1 1 0 Probable transposase Auto_anti-p27 PF06677.12 gi|320100433|ref|YP_004176025.1| - 0.036 14.2 1.7 0.082 13.1 1.7 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) C1_1 PF00130.22 gi|320100433|ref|YP_004176025.1| - 0.069 13.0 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_ligase_ZBD PF03119.16 gi|320100433|ref|YP_004176025.1| - 0.085 12.9 2.0 6.1 7.0 0.1 3.1 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain VasL PF12486.8 gi|320100433|ref|YP_004176025.1| - 0.15 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Type VI secretion system, EvfB, or VasL Zn-ribbon_8 PF09723.10 gi|320100433|ref|YP_004176025.1| - 0.32 11.1 1.7 15 5.8 0.1 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|320100433|ref|YP_004176025.1| - 0.4 11.0 3.3 0.65 10.3 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon zf-NADH-PPase PF09297.11 gi|320100433|ref|YP_004176025.1| - 0.97 9.1 3.4 0.89 9.3 1.2 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|320100433|ref|YP_004176025.1| - 2.9 8.2 5.1 27 5.1 0.1 3.0 3 0 0 3 3 3 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.6 gi|320100433|ref|YP_004176025.1| - 3.4 7.2 7.4 4.4 6.9 4.5 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|320100433|ref|YP_004176025.1| - 6.9 6.5 8.5 7.6 6.4 1.5 2.7 2 1 2 4 4 4 0 zinc-ribbon domain SUI1 PF01253.22 gi|320100434|ref|YP_004176026.1| - 8.8e-20 71.0 0.2 1e-19 70.8 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|320100434|ref|YP_004176026.1| - 0.1 12.9 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DUF809 PF05663.11 gi|320100434|ref|YP_004176026.1| - 0.14 12.3 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF809) Zn-ribbon_8 PF09723.10 gi|320100435|ref|YP_004176027.1| - 6.7e-05 22.9 1.3 8.4e-05 22.6 1.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|320100435|ref|YP_004176027.1| - 0.0001 21.9 6.8 0.00065 19.3 6.8 2.0 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|320100435|ref|YP_004176027.1| - 0.00091 19.2 2.6 0.018 15.0 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|320100435|ref|YP_004176027.1| - 0.0014 18.5 4.0 0.14 12.1 0.3 2.3 1 1 1 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|320100435|ref|YP_004176027.1| - 0.0017 17.8 1.3 0.26 10.8 0.1 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding Rubredoxin PF00301.20 gi|320100435|ref|YP_004176027.1| - 0.0059 16.6 3.7 0.052 13.6 0.5 2.1 2 0 0 2 2 2 1 Rubredoxin zinc_ribbon_5 PF13719.6 gi|320100435|ref|YP_004176027.1| - 0.0082 15.9 5.1 0.07 12.9 0.5 2.2 1 1 1 2 2 2 1 zinc-ribbon domain zf-RING_7 PF02591.15 gi|320100435|ref|YP_004176027.1| - 0.0098 16.1 0.8 0.013 15.7 0.8 1.2 1 0 0 1 1 1 1 C4-type zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|320100435|ref|YP_004176027.1| - 0.015 15.2 1.3 0.024 14.6 1.3 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.26 gi|320100435|ref|YP_004176027.1| - 0.016 15.6 2.5 0.27 11.8 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type HypA PF01155.19 gi|320100435|ref|YP_004176027.1| - 0.017 15.2 0.2 0.017 15.2 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA VirDNA-topo-I_N PF09266.10 gi|320100435|ref|YP_004176027.1| - 0.029 14.5 0.0 0.038 14.1 0.0 1.3 1 0 0 1 1 1 0 Viral DNA topoisomerase I, N-terminal zinc_ribbon_2 PF13240.6 gi|320100435|ref|YP_004176027.1| - 0.034 13.9 2.2 1.9 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|320100435|ref|YP_004176027.1| - 0.039 14.3 0.3 0.047 14.1 0.3 1.1 1 0 0 1 1 1 0 Probable Zinc-ribbon domain TackOD1 PF18551.1 gi|320100435|ref|YP_004176027.1| - 0.053 13.2 0.2 0.057 13.1 0.2 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-ribbon_3 PF13248.6 gi|320100435|ref|YP_004176027.1| - 0.077 12.4 2.5 1.5 8.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|320100435|ref|YP_004176027.1| - 0.092 13.2 2.6 4.9 7.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf_UBZ PF18439.1 gi|320100435|ref|YP_004176027.1| - 0.1 12.2 1.9 0.88 9.2 0.1 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Rtf2 PF04641.12 gi|320100435|ref|YP_004176027.1| - 0.15 11.4 0.3 0.17 11.2 0.3 1.0 1 0 0 1 1 1 0 Rtf2 RING-finger UPF0547 PF10571.9 gi|320100435|ref|YP_004176027.1| - 0.15 12.1 5.2 1 9.5 0.6 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|320100435|ref|YP_004176027.1| - 0.18 11.6 3.6 2.8 7.7 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2_4 PF13894.6 gi|320100435|ref|YP_004176027.1| - 0.21 12.5 1.5 4.8 8.3 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger TFIIS_C PF01096.18 gi|320100435|ref|YP_004176027.1| - 0.31 10.9 5.7 6 6.8 0.6 2.6 2 1 1 3 3 3 0 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|320100435|ref|YP_004176027.1| - 0.51 10.3 5.4 2.7 7.9 0.4 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_13 PF09855.9 gi|320100435|ref|YP_004176027.1| - 1.1 9.5 5.7 1.5 9.0 0.5 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Mu-like_Com PF10122.9 gi|320100435|ref|YP_004176027.1| - 2.3 7.7 5.7 11 5.6 0.5 2.1 1 1 0 2 2 2 0 Mu-like prophage protein Com Arginase PF00491.21 gi|320100436|ref|YP_004176028.1| - 7.7e-58 196.2 0.0 1.1e-57 195.6 0.0 1.1 1 0 0 1 1 1 1 Arginase family CHASE2 PF05226.11 gi|320100436|ref|YP_004176028.1| - 0.13 12.0 0.0 2.6 7.7 0.0 2.2 1 1 0 2 2 2 0 CHASE2 domain HGTP_anticodon PF03129.20 gi|320100437|ref|YP_004176029.1| - 6.1e-25 87.2 0.2 1.5e-24 85.9 0.2 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|320100437|ref|YP_004176029.1| - 4.6e-12 46.3 0.0 5.9e-11 42.7 0.0 2.4 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-C2H2 PF00096.26 gi|320100437|ref|YP_004176029.1| - 0.08 13.4 1.2 41 4.9 0.0 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type ADK_lid PF05191.14 gi|320100437|ref|YP_004176029.1| - 0.19 11.8 0.2 0.64 10.1 0.2 1.9 1 1 0 1 1 1 0 Adenylate kinase, active site lid Molydop_binding PF01568.21 gi|320100438|ref|YP_004176030.1| - 0.0028 17.6 0.0 0.0039 17.2 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain MazE_antitoxin PF04014.18 gi|320100438|ref|YP_004176030.1| - 0.0066 16.3 0.0 0.026 14.5 0.0 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Radical_SAM PF04055.21 gi|320100440|ref|YP_004176032.1| - 2e-11 44.5 2.0 1.8e-10 41.5 1.8 2.7 1 1 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|320100440|ref|YP_004176032.1| - 1.1e-08 35.2 0.0 2e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain DUF5413 PF17434.2 gi|320100440|ref|YP_004176032.1| - 0.0063 16.8 0.1 0.024 15.0 0.1 1.9 2 0 0 2 2 2 1 Family of unknown function (DUF5413) tRNA_int_endo PF01974.17 gi|320100441|ref|YP_004176033.1| - 1.1e-25 89.4 0.1 1.6e-25 89.0 0.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|320100441|ref|YP_004176033.1| - 9.2e-07 28.4 0.0 1.7e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|320100441|ref|YP_004176033.1| - 0.0079 16.4 0.1 0.046 13.9 0.0 2.1 2 0 0 2 2 2 1 tRNA-splicing endonuclease subunit sen54 N-term PhoU_div PF01865.16 gi|320100442|ref|YP_004176034.1| - 6.2e-09 35.5 5.9 9.1e-09 35.0 5.9 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|320100442|ref|YP_004176034.1| - 0.012 16.1 9.0 0.03 14.8 0.8 2.4 2 0 0 2 2 2 0 PhoU domain DUF1759 PF03564.15 gi|320100442|ref|YP_004176034.1| - 1.4 8.8 6.4 12 5.8 0.1 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1759) Flavoprotein PF02441.19 gi|320100444|ref|YP_004176036.1| - 2.3e-23 82.7 0.0 3.4e-23 82.1 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein DUF4947 PF16305.5 gi|320100445|ref|YP_004176037.1| - 0.0085 16.1 0.0 0.0099 15.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4947) DUF2642 PF10842.8 gi|320100445|ref|YP_004176037.1| - 0.025 14.4 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2642) Sua5_yciO_yrdC PF01300.18 gi|320100446|ref|YP_004176038.1| - 7.9e-57 191.6 0.0 1.1e-56 191.1 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|320100446|ref|YP_004176038.1| - 1.2e-28 100.3 0.0 1.7e-28 99.9 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding ATPase PF06745.13 gi|320100447|ref|YP_004176039.1| - 1.9e-54 184.5 0.0 2.1e-54 184.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|320100447|ref|YP_004176039.1| - 2.7e-08 33.6 0.0 4.6e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|320100447|ref|YP_004176039.1| - 7.1e-06 25.5 0.1 1.3e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 Rad51 RecA PF00154.21 gi|320100447|ref|YP_004176039.1| - 9.4e-06 25.3 0.0 1.4e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein MEDS PF14417.6 gi|320100447|ref|YP_004176039.1| - 0.00018 21.4 0.0 0.00032 20.6 0.0 1.4 1 1 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain GvpD PF07088.11 gi|320100447|ref|YP_004176039.1| - 0.00036 19.3 0.9 0.0056 15.4 0.9 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.17 gi|320100447|ref|YP_004176039.1| - 0.002 17.9 0.0 0.0035 17.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|320100447|ref|YP_004176039.1| - 0.0036 16.7 0.0 0.0052 16.1 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|320100447|ref|YP_004176039.1| - 0.0084 15.9 0.0 0.015 15.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|320100447|ref|YP_004176039.1| - 0.019 14.1 0.0 0.12 11.5 0.0 1.9 2 0 0 2 2 2 0 PAXNEB protein AAA_22 PF13401.6 gi|320100447|ref|YP_004176039.1| - 0.03 14.6 0.0 0.046 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|320100447|ref|YP_004176039.1| - 0.059 12.6 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|320100447|ref|YP_004176039.1| - 0.13 12.6 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|320100447|ref|YP_004176039.1| - 0.16 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Helicase_RecD PF05127.14 gi|320100448|ref|YP_004176040.1| - 2.1e-53 180.8 0.0 4.8e-53 179.6 0.0 1.6 2 0 0 2 2 2 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|320100448|ref|YP_004176040.1| - 1e-42 146.1 0.0 2.8e-29 102.2 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|320100448|ref|YP_004176040.1| - 1e-28 99.1 0.0 4.6e-28 97.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|320100448|ref|YP_004176040.1| - 0.00013 21.7 0.0 0.00025 20.8 0.0 1.4 1 0 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_1 PF00583.25 gi|320100448|ref|YP_004176040.1| - 0.00027 21.2 0.0 0.00056 20.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|320100448|ref|YP_004176040.1| - 0.0011 19.4 0.0 0.0057 17.0 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain AAA PF00004.29 gi|320100449|ref|YP_004176041.1| - 1.9e-99 329.3 0.0 3.2e-50 170.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|320100449|ref|YP_004176041.1| - 1.3e-36 124.2 4.3 1.8e-18 66.1 0.2 2.8 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|320100449|ref|YP_004176041.1| - 1.9e-27 95.2 0.1 7.4e-27 93.4 0.1 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|320100449|ref|YP_004176041.1| - 4e-17 61.7 0.3 2.4e-16 59.3 0.1 2.5 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|320100449|ref|YP_004176041.1| - 5.1e-16 58.8 0.0 3.2e-08 33.5 0.0 3.0 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|320100449|ref|YP_004176041.1| - 1e-13 52.0 0.0 9e-07 29.4 0.0 2.8 2 0 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|320100449|ref|YP_004176041.1| - 1.8e-13 51.0 0.0 2.2e-07 31.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|320100449|ref|YP_004176041.1| - 2.1e-12 46.9 0.2 3.5e-05 23.2 0.0 2.8 2 1 1 3 3 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|320100449|ref|YP_004176041.1| - 3.8e-12 46.7 0.6 0.00068 19.9 0.1 4.3 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|320100449|ref|YP_004176041.1| - 1.6e-11 44.4 1.6 2e-05 24.6 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|320100449|ref|YP_004176041.1| - 5.5e-11 42.8 0.0 0.00016 21.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|320100449|ref|YP_004176041.1| - 2.2e-09 37.4 0.0 0.00012 22.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|320100449|ref|YP_004176041.1| - 3.6e-09 36.5 0.0 0.0063 16.5 0.0 3.1 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain IstB_IS21 PF01695.17 gi|320100449|ref|YP_004176041.1| - 9.1e-09 35.3 0.0 0.0064 16.2 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|320100449|ref|YP_004176041.1| - 1.1e-08 35.7 0.0 0.0017 18.9 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|320100449|ref|YP_004176041.1| - 6.5e-08 33.0 0.0 0.0039 17.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|320100449|ref|YP_004176041.1| - 2e-07 31.3 0.0 0.0046 17.3 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.6 gi|320100449|ref|YP_004176041.1| - 2.6e-07 30.4 4.6 0.51 9.9 0.0 4.7 3 1 0 4 4 4 2 AAA domain Mg_chelatase PF01078.21 gi|320100449|ref|YP_004176041.1| - 3.9e-07 29.7 1.1 0.018 14.4 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|320100449|ref|YP_004176041.1| - 1.8e-06 27.8 0.0 0.02 14.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|320100449|ref|YP_004176041.1| - 8.7e-06 25.7 0.1 0.078 13.0 0.0 2.7 2 1 1 3 3 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|320100449|ref|YP_004176041.1| - 1.3e-05 24.7 3.8 0.25 10.6 0.0 4.1 4 1 0 5 5 4 2 KaiC Zeta_toxin PF06414.12 gi|320100449|ref|YP_004176041.1| - 1.8e-05 24.1 0.0 0.22 10.8 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin ABC_tran PF00005.27 gi|320100449|ref|YP_004176041.1| - 2.6e-05 24.8 0.0 0.21 12.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_7 PF12775.7 gi|320100449|ref|YP_004176041.1| - 3.4e-05 23.4 0.0 0.17 11.4 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_3 PF07726.11 gi|320100449|ref|YP_004176041.1| - 3.6e-05 23.6 0.0 0.14 12.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|320100449|ref|YP_004176041.1| - 3.8e-05 23.4 0.1 0.44 10.2 0.0 3.2 2 1 0 2 2 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.17 gi|320100449|ref|YP_004176041.1| - 3.9e-05 22.9 0.1 0.048 12.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|320100449|ref|YP_004176041.1| - 5.9e-05 23.1 0.1 0.019 14.9 0.0 2.8 3 0 0 3 3 2 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|320100449|ref|YP_004176041.1| - 7.9e-05 22.6 0.0 0.0065 16.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein DUF815 PF05673.13 gi|320100449|ref|YP_004176041.1| - 8.7e-05 21.8 0.0 0.34 10.0 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) PhoH PF02562.16 gi|320100449|ref|YP_004176041.1| - 0.00013 21.5 1.3 0.28 10.6 0.1 2.6 2 0 0 2 2 2 2 PhoH-like protein DUF2075 PF09848.9 gi|320100449|ref|YP_004176041.1| - 0.00029 20.2 0.0 0.083 12.1 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|320100449|ref|YP_004176041.1| - 0.00029 20.8 1.1 0.7 9.8 0.1 3.3 3 0 0 3 3 3 1 NACHT domain Rad17 PF03215.15 gi|320100449|ref|YP_004176041.1| - 0.0018 18.2 0.0 1.9 8.4 0.0 3.1 2 1 1 3 3 3 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|320100449|ref|YP_004176041.1| - 0.0019 18.0 0.4 2.3 7.9 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_17 PF13207.6 gi|320100449|ref|YP_004176041.1| - 0.0022 18.4 0.1 2 8.8 0.0 3.0 3 0 0 3 3 2 1 AAA domain T2SSE PF00437.20 gi|320100449|ref|YP_004176041.1| - 0.0028 16.8 0.0 1.2 8.1 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_11 PF13086.6 gi|320100449|ref|YP_004176041.1| - 0.0032 17.3 0.0 1.5 8.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_6 PF12774.7 gi|320100449|ref|YP_004176041.1| - 0.0049 15.9 0.0 0.15 11.0 0.0 2.5 2 1 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region Sigma54_activ_2 PF14532.6 gi|320100449|ref|YP_004176041.1| - 0.0054 16.8 0.0 2.5 8.2 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain IPT PF01745.16 gi|320100449|ref|YP_004176041.1| - 0.0057 16.1 0.4 2.5 7.4 0.1 2.4 2 0 0 2 2 2 1 Isopentenyl transferase Molydop_binding PF01568.21 gi|320100449|ref|YP_004176041.1| - 0.0076 16.3 0.2 0.029 14.4 0.0 2.0 2 0 0 2 2 1 1 Molydopterin dinucleotide binding domain Cytidylate_kin PF02224.18 gi|320100449|ref|YP_004176041.1| - 0.01 15.5 0.1 2.8 7.6 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase AAA_19 PF13245.6 gi|320100449|ref|YP_004176041.1| - 0.013 15.9 3.5 6 7.2 0.1 3.3 2 1 0 3 3 3 0 AAA domain PduV-EutP PF10662.9 gi|320100449|ref|YP_004176041.1| - 0.019 14.7 0.0 4.6 7.0 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|320100449|ref|YP_004176041.1| - 0.021 14.0 0.0 5.2 6.2 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain SKI PF01202.22 gi|320100449|ref|YP_004176041.1| - 0.033 14.3 0.0 4 7.5 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase TniB PF05621.11 gi|320100449|ref|YP_004176041.1| - 0.056 12.9 0.0 12 5.3 0.0 3.3 4 0 0 4 4 3 0 Bacterial TniB protein AFG1_ATPase PF03969.16 gi|320100449|ref|YP_004176041.1| - 0.056 12.3 0.0 11 4.8 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase Guanylate_kin PF00625.21 gi|320100449|ref|YP_004176041.1| - 0.062 13.0 0.2 43 3.7 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase AAA_29 PF13555.6 gi|320100449|ref|YP_004176041.1| - 0.066 13.0 0.0 14 5.6 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain KAP_NTPase PF07693.14 gi|320100449|ref|YP_004176041.1| - 0.068 12.4 0.0 2.2 7.5 0.0 2.4 2 0 0 2 2 2 0 KAP family P-loop domain eIF-1a PF01176.19 gi|320100449|ref|YP_004176041.1| - 0.086 12.7 1.0 0.2 11.5 0.1 2.1 2 0 0 2 2 1 0 Translation initiation factor 1A / IF-1 ResIII PF04851.15 gi|320100449|ref|YP_004176041.1| - 0.11 12.5 0.0 22 5.0 0.0 2.7 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit DUF1905 PF08922.11 gi|320100449|ref|YP_004176041.1| - 0.12 12.5 0.3 1.2 9.2 0.0 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF1905) NTPase_1 PF03266.15 gi|320100449|ref|YP_004176041.1| - 0.12 12.2 4.0 23 4.9 0.0 4.0 3 1 1 4 4 3 0 NTPase Viral_helicase1 PF01443.18 gi|320100449|ref|YP_004176041.1| - 0.18 11.5 0.0 3.9 7.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Hydin_ADK PF17213.3 gi|320100449|ref|YP_004176041.1| - 0.26 11.5 0.3 6.5 7.0 0.1 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain ATPase PF06745.13 gi|320100450|ref|YP_004176042.1| - 3.3e-88 294.9 0.1 3.7e-88 294.8 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|320100450|ref|YP_004176042.1| - 1.5e-07 31.2 0.1 3.1e-07 30.2 0.1 1.5 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|320100450|ref|YP_004176042.1| - 3.5e-05 22.6 0.0 4.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|320100450|ref|YP_004176042.1| - 8.5e-05 21.9 0.2 0.0048 16.2 0.0 2.2 2 0 0 2 2 2 1 Rad51 RecA PF00154.21 gi|320100450|ref|YP_004176042.1| - 0.00029 20.4 0.2 0.051 13.0 0.0 2.4 2 0 0 2 2 2 1 recA bacterial DNA recombination protein DUF2075 PF09848.9 gi|320100450|ref|YP_004176042.1| - 0.00045 19.6 0.9 0.014 14.7 0.2 2.1 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|320100450|ref|YP_004176042.1| - 0.0041 17.5 0.0 0.0064 16.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|320100450|ref|YP_004176042.1| - 0.0079 15.3 0.0 0.014 14.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DnaB_C PF03796.15 gi|320100450|ref|YP_004176042.1| - 0.017 14.5 0.0 0.031 13.6 0.0 1.6 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_19 PF13245.6 gi|320100450|ref|YP_004176042.1| - 0.019 15.3 1.4 0.065 13.6 1.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|320100450|ref|YP_004176042.1| - 0.028 14.1 0.4 0.24 11.1 0.3 2.4 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|320100450|ref|YP_004176042.1| - 0.038 14.4 0.9 0.085 13.3 0.9 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FliM PF02154.15 gi|320100450|ref|YP_004176042.1| - 0.044 13.7 0.6 3.2 7.6 0.1 2.4 1 1 1 2 2 2 0 Flagellar motor switch protein FliM MEDS PF14417.6 gi|320100450|ref|YP_004176042.1| - 0.055 13.3 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain IstB_IS21 PF01695.17 gi|320100450|ref|YP_004176042.1| - 0.1 12.3 0.0 0.2 11.4 0.0 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|320100450|ref|YP_004176042.1| - 0.13 12.6 0.1 0.31 11.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|320100450|ref|YP_004176042.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF4988 PF16378.5 gi|320100451|ref|YP_004176043.1| - 0.11 12.2 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function CENP-F_leu_zip PF10473.9 gi|320100452|ref|YP_004176044.1| - 5e-05 23.3 16.5 7.6e-05 22.8 16.2 1.5 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF812 PF05667.11 gi|320100452|ref|YP_004176044.1| - 5.3e-05 22.3 4.6 6.4e-05 22.0 4.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) ATG16 PF08614.11 gi|320100452|ref|YP_004176044.1| - 9e-05 22.8 14.7 0.00033 21.0 14.7 1.8 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) GerE PF00196.19 gi|320100452|ref|YP_004176044.1| - 9e-05 21.9 0.2 0.00033 20.1 0.0 1.9 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|320100452|ref|YP_004176044.1| - 0.00015 21.3 0.0 0.00065 19.3 0.0 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 DUF3450 PF11932.8 gi|320100452|ref|YP_004176044.1| - 0.00027 20.3 2.7 0.00039 19.8 2.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) DUF16 PF01519.16 gi|320100452|ref|YP_004176044.1| - 0.00028 21.4 2.8 0.00028 21.4 2.8 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF16 HTH_38 PF13936.6 gi|320100452|ref|YP_004176044.1| - 0.00039 20.1 0.1 0.0011 18.6 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|320100452|ref|YP_004176044.1| - 0.0004 20.1 0.0 0.0015 18.3 0.0 1.9 2 0 0 2 2 1 1 Homeodomain-like domain AAA_13 PF13166.6 gi|320100452|ref|YP_004176044.1| - 0.00053 18.8 3.0 0.00073 18.3 3.0 1.4 1 1 0 1 1 1 1 AAA domain Macoilin PF09726.9 gi|320100452|ref|YP_004176044.1| - 0.00061 18.5 4.2 0.00072 18.3 4.2 1.1 1 0 0 1 1 1 1 Macoilin family TPR_MLP1_2 PF07926.12 gi|320100452|ref|YP_004176044.1| - 0.00067 19.7 9.7 0.00067 19.7 9.7 1.9 2 0 0 2 2 1 1 TPR/MLP1/MLP2-like protein DHR10 PF18595.1 gi|320100452|ref|YP_004176044.1| - 0.00068 19.7 10.3 0.00068 19.7 10.3 2.2 2 0 0 2 2 2 1 Designed helical repeat protein 10 domain HTH_40 PF14493.6 gi|320100452|ref|YP_004176044.1| - 0.00073 20.0 3.0 0.0066 16.9 3.0 2.5 1 1 0 1 1 1 1 Helix-turn-helix domain KxDL PF10241.9 gi|320100452|ref|YP_004176044.1| - 0.00073 19.8 3.1 0.0017 18.6 3.1 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein EzrA PF06160.12 gi|320100452|ref|YP_004176044.1| - 0.00076 17.8 4.1 0.00098 17.4 4.1 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA HOOK PF05622.12 gi|320100452|ref|YP_004176044.1| - 0.00077 17.7 7.0 0.00098 17.4 7.0 1.2 1 0 0 1 1 1 1 HOOK protein NPV_P10 PF05531.12 gi|320100452|ref|YP_004176044.1| - 0.001 19.5 0.3 0.39 11.2 0.0 3.0 2 1 1 3 3 2 1 Nucleopolyhedrovirus P10 protein HTH_29 PF13551.6 gi|320100452|ref|YP_004176044.1| - 0.0013 18.7 0.0 0.0039 17.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix FapA PF03961.13 gi|320100452|ref|YP_004176044.1| - 0.0018 17.0 4.8 0.0023 16.6 4.8 1.1 1 0 0 1 1 1 1 Flagellar Assembly Protein A APG6_N PF17675.1 gi|320100452|ref|YP_004176044.1| - 0.002 18.7 10.1 0.0031 18.0 10.1 1.4 1 0 0 1 1 1 1 Apg6 coiled-coil region Filament PF00038.21 gi|320100452|ref|YP_004176044.1| - 0.0022 17.7 10.0 0.0042 16.7 9.4 1.6 1 1 0 1 1 1 1 Intermediate filament protein Atg14 PF10186.9 gi|320100452|ref|YP_004176044.1| - 0.0025 17.0 6.5 0.0037 16.4 6.5 1.3 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 IFT57 PF10498.9 gi|320100452|ref|YP_004176044.1| - 0.0027 16.7 3.2 0.0034 16.4 3.2 1.3 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 FPP PF05911.11 gi|320100452|ref|YP_004176044.1| - 0.0033 15.7 6.6 0.0041 15.4 6.6 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil HTH_24 PF13412.6 gi|320100452|ref|YP_004176044.1| - 0.0034 16.9 0.0 0.0034 16.9 0.0 2.8 3 0 0 3 3 1 1 Winged helix-turn-helix DNA-binding GOLGA2L5 PF15070.6 gi|320100452|ref|YP_004176044.1| - 0.0037 16.0 5.3 0.0043 15.8 5.3 1.2 1 0 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 BLOC1_2 PF10046.9 gi|320100452|ref|YP_004176044.1| - 0.0039 17.5 6.8 0.011 16.0 4.8 2.4 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3037 PF11236.8 gi|320100452|ref|YP_004176044.1| - 0.0043 17.5 1.8 0.0079 16.6 1.0 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF3037) TACC_C PF05010.14 gi|320100452|ref|YP_004176044.1| - 0.0044 16.8 4.0 0.0044 16.8 4.0 1.7 2 0 0 2 2 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF4407 PF14362.6 gi|320100452|ref|YP_004176044.1| - 0.0046 16.4 3.2 0.0059 16.0 3.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) DUF724 PF05266.14 gi|320100452|ref|YP_004176044.1| - 0.0053 16.6 5.1 0.0053 16.6 5.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF724) Tropomyosin_1 PF12718.7 gi|320100452|ref|YP_004176044.1| - 0.0056 16.8 11.6 0.0056 16.8 11.6 2.2 2 1 0 2 2 2 1 Tropomyosin like GAS PF13851.6 gi|320100452|ref|YP_004176044.1| - 0.006 16.0 6.5 0.011 15.1 6.5 1.4 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding HTH_5 PF01022.20 gi|320100452|ref|YP_004176044.1| - 0.0063 16.4 0.1 0.053 13.4 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family UPF0242 PF06785.11 gi|320100452|ref|YP_004176044.1| - 0.0064 16.6 10.3 0.015 15.4 9.8 1.5 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0242) N-terminus Laminin_II PF06009.12 gi|320100452|ref|YP_004176044.1| - 0.0069 16.4 2.7 0.0069 16.4 2.7 1.8 2 0 0 2 2 1 1 Laminin Domain II HTH_11 PF08279.12 gi|320100452|ref|YP_004176044.1| - 0.0081 16.1 0.1 0.031 14.2 0.0 2.0 2 0 0 2 2 1 1 HTH domain DUF641 PF04859.12 gi|320100452|ref|YP_004176044.1| - 0.0084 16.4 8.7 0.015 15.6 5.0 2.4 1 1 1 2 2 2 1 Plant protein of unknown function (DUF641) Spc7 PF08317.11 gi|320100452|ref|YP_004176044.1| - 0.009 14.9 14.1 0.016 14.1 14.1 1.4 1 1 0 1 1 1 1 Spc7 kinetochore protein PKcGMP_CC PF16808.5 gi|320100452|ref|YP_004176044.1| - 0.012 15.5 2.6 0.012 15.5 2.6 3.4 2 1 1 3 3 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4795 PF16043.5 gi|320100452|ref|YP_004176044.1| - 0.013 15.1 7.3 0.028 14.0 7.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Exonuc_VII_L PF02601.15 gi|320100452|ref|YP_004176044.1| - 0.014 15.0 4.8 0.018 14.7 4.8 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit T3SSipB PF16535.5 gi|320100452|ref|YP_004176044.1| - 0.014 15.9 2.5 0.068 13.7 2.5 1.9 1 1 0 1 1 1 0 Type III cell invasion protein SipB DUF3584 PF12128.8 gi|320100452|ref|YP_004176044.1| - 0.015 12.9 7.0 0.018 12.6 7.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Fib_alpha PF08702.10 gi|320100452|ref|YP_004176044.1| - 0.016 15.4 5.0 0.024 14.8 2.9 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family HemX PF04375.14 gi|320100452|ref|YP_004176044.1| - 0.019 14.3 6.1 0.19 11.0 6.6 1.9 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase AIP3 PF03915.13 gi|320100452|ref|YP_004176044.1| - 0.02 14.0 3.4 0.024 13.7 3.4 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 ADIP PF11559.8 gi|320100452|ref|YP_004176044.1| - 0.024 14.8 9.0 0.025 14.7 6.8 1.9 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding V-SNARE_C PF12352.8 gi|320100452|ref|YP_004176044.1| - 0.025 14.9 1.2 3.9 7.8 0.1 3.1 3 0 0 3 3 3 0 Snare region anchored in the vesicle membrane C-terminus HTH_28 PF13518.6 gi|320100452|ref|YP_004176044.1| - 0.026 14.7 0.0 0.073 13.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HisKA PF00512.25 gi|320100452|ref|YP_004176044.1| - 0.028 14.4 1.8 0.88 9.6 0.5 2.5 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain PI3K_P85_iSH2 PF16454.5 gi|320100452|ref|YP_004176044.1| - 0.032 13.8 8.9 0.038 13.6 5.2 2.1 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain HTH_20 PF12840.7 gi|320100452|ref|YP_004176044.1| - 0.032 14.3 0.4 0.14 12.3 0.0 2.3 3 0 0 3 3 1 0 Helix-turn-helix domain Snapin_Pallidin PF14712.6 gi|320100452|ref|YP_004176044.1| - 0.034 14.6 4.8 0.074 13.5 4.8 1.6 1 0 0 1 1 1 0 Snapin/Pallidin Fzo_mitofusin PF04799.13 gi|320100452|ref|YP_004176044.1| - 0.039 13.5 5.8 0.16 11.5 1.4 2.4 1 1 1 2 2 2 0 fzo-like conserved region HTH_DeoR PF08220.12 gi|320100452|ref|YP_004176044.1| - 0.04 13.7 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|320100452|ref|YP_004176044.1| - 0.04 13.4 3.3 0.052 13.1 0.0 2.8 3 0 0 3 3 1 0 Sigma-70, region 4 COG2 PF06148.11 gi|320100452|ref|YP_004176044.1| - 0.042 14.0 10.2 0.2 11.7 4.3 2.9 2 1 1 3 3 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Phlebovirus_NSM PF07246.11 gi|320100452|ref|YP_004176044.1| - 0.042 13.2 3.3 0.053 12.9 3.3 1.1 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M Baculo_PEP_C PF04513.12 gi|320100452|ref|YP_004176044.1| - 0.046 13.7 1.1 0.22 11.5 0.2 2.5 2 1 1 3 3 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1515 PF07439.11 gi|320100452|ref|YP_004176044.1| - 0.054 13.5 3.3 0.086 12.9 2.2 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF1515) Poty_PP PF08440.10 gi|320100452|ref|YP_004176044.1| - 0.057 12.5 1.1 0.088 11.9 1.0 1.3 1 1 0 1 1 1 0 Potyviridae polyprotein ATPase PF06745.13 gi|320100452|ref|YP_004176044.1| - 0.066 12.5 0.4 0.16 11.3 0.6 1.5 2 0 0 2 2 1 0 KaiC V-SNARE PF05008.15 gi|320100452|ref|YP_004176044.1| - 0.066 13.6 10.9 0.079 13.3 8.5 2.2 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DnaB_bind PF10410.9 gi|320100452|ref|YP_004176044.1| - 0.073 13.3 1.5 4.7 7.5 0.0 3.4 4 0 0 4 4 2 0 DnaB-helicase binding domain of primase RPW8 PF05659.11 gi|320100452|ref|YP_004176044.1| - 0.075 12.7 6.5 0.037 13.7 2.5 2.4 1 1 2 3 3 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Myosin_tail_1 PF01576.19 gi|320100452|ref|YP_004176044.1| - 0.076 10.8 18.2 0.14 9.9 18.2 1.4 1 1 0 1 1 1 0 Myosin tail T3SS_needle_E PF08988.10 gi|320100452|ref|YP_004176044.1| - 0.077 13.1 0.7 0.077 13.1 0.7 4.0 2 1 0 3 3 2 0 Type III secretion system, cytoplasmic E component of needle HTH_Tnp_ISL3 PF13542.6 gi|320100452|ref|YP_004176044.1| - 0.083 12.3 0.1 0.2 11.1 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of transposase family ISL3 DUF1664 PF07889.12 gi|320100452|ref|YP_004176044.1| - 0.083 12.9 4.3 0.7 9.9 3.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) HAUS-augmin3 PF14932.6 gi|320100452|ref|YP_004176044.1| - 0.096 12.3 9.2 0.16 11.6 9.2 1.5 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 CASP_C PF08172.12 gi|320100452|ref|YP_004176044.1| - 0.11 11.8 4.2 0.2 11.0 4.2 1.4 1 0 0 1 1 1 0 CASP C terminal ING PF12998.7 gi|320100452|ref|YP_004176044.1| - 0.11 13.0 4.8 0.14 12.8 3.4 1.7 2 0 0 2 2 1 0 Inhibitor of growth proteins N-terminal histone-binding PspA_IM30 PF04012.12 gi|320100452|ref|YP_004176044.1| - 0.12 11.9 11.8 0.94 9.0 8.7 2.2 1 1 1 2 2 2 0 PspA/IM30 family Phage_GP20 PF06810.11 gi|320100452|ref|YP_004176044.1| - 0.13 12.1 6.4 0.34 10.7 2.4 2.2 1 1 1 2 2 2 0 Phage minor structural protein GP20 L31 PF09784.9 gi|320100452|ref|YP_004176044.1| - 0.13 12.7 0.7 0.3 11.5 0.7 1.7 1 1 0 1 1 1 0 Mitochondrial ribosomal protein L31 YkyA PF10368.9 gi|320100452|ref|YP_004176044.1| - 0.14 11.8 12.7 0.041 13.6 9.4 1.6 2 0 0 2 2 1 0 Putative cell-wall binding lipoprotein DUF5082 PF16888.5 gi|320100452|ref|YP_004176044.1| - 0.16 12.2 8.3 2.9 8.2 1.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) DUF745 PF05335.13 gi|320100452|ref|YP_004176044.1| - 0.17 11.6 6.9 0.13 12.0 5.3 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF745) V_ATPase_I PF01496.19 gi|320100452|ref|YP_004176044.1| - 0.17 9.8 4.6 0.2 9.5 4.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HAP1_N PF04849.13 gi|320100452|ref|YP_004176044.1| - 0.17 11.0 12.0 0.25 10.5 12.0 1.1 1 0 0 1 1 1 0 HAP1 N-terminal conserved region HrpB7 PF09486.10 gi|320100452|ref|YP_004176044.1| - 0.17 12.2 9.8 0.57 10.5 5.9 2.2 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) FlaC_arch PF05377.11 gi|320100452|ref|YP_004176044.1| - 0.18 12.2 12.1 0.68 10.4 2.7 3.2 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) TMF_TATA_bd PF12325.8 gi|320100452|ref|YP_004176044.1| - 0.18 12.0 14.6 0.18 12.1 10.4 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Spc29 PF17082.5 gi|320100452|ref|YP_004176044.1| - 0.19 11.6 4.6 1 9.2 3.8 2.1 1 1 0 1 1 1 0 Spindle Pole Component 29 Prefoldin PF02996.17 gi|320100452|ref|YP_004176044.1| - 0.19 11.7 8.7 3.6 7.5 0.4 2.7 1 1 2 3 3 3 0 Prefoldin subunit TMPIT PF07851.13 gi|320100452|ref|YP_004176044.1| - 0.22 10.7 7.2 0.13 11.4 5.2 1.6 1 1 1 2 2 2 0 TMPIT-like protein Wtap PF17098.5 gi|320100452|ref|YP_004176044.1| - 0.22 11.4 11.1 0.082 12.8 3.7 2.4 1 1 1 2 2 2 0 WTAP/Mum2p family DUF4201 PF13870.6 gi|320100452|ref|YP_004176044.1| - 0.22 11.2 11.1 0.47 10.2 10.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) YscO PF07321.12 gi|320100452|ref|YP_004176044.1| - 0.22 11.4 14.3 0.16 12.0 6.1 2.3 1 1 1 2 2 2 0 Type III secretion protein YscO DASH_Duo1 PF08651.10 gi|320100452|ref|YP_004176044.1| - 0.23 11.3 3.7 1.8 8.4 0.2 2.4 1 1 2 3 3 3 0 DASH complex subunit Duo1 USP8_interact PF08941.10 gi|320100452|ref|YP_004176044.1| - 0.24 11.2 2.8 0.86 9.4 2.7 2.0 1 1 0 1 1 1 0 USP8 interacting DUF2730 PF10805.8 gi|320100452|ref|YP_004176044.1| - 0.24 11.5 3.4 0.89 9.7 3.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) Golgin_A5 PF09787.9 gi|320100452|ref|YP_004176044.1| - 0.26 10.7 11.9 0.27 10.7 10.8 1.4 1 1 0 1 1 1 0 Golgin subfamily A member 5 DUF948 PF06103.11 gi|320100452|ref|YP_004176044.1| - 0.28 11.5 2.5 1.8 8.8 2.5 2.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Med4 PF10018.9 gi|320100452|ref|YP_004176044.1| - 0.29 10.8 4.8 0.35 10.5 2.5 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DLP_helical PF18709.1 gi|320100452|ref|YP_004176044.1| - 0.29 10.3 6.9 0.84 8.8 6.5 2.0 1 1 0 1 1 1 0 Dynamin-like helical domain Fez1 PF06818.15 gi|320100452|ref|YP_004176044.1| - 0.31 11.5 13.0 0.24 11.8 11.6 1.5 1 1 0 1 1 1 0 Fez1 Bcr-Abl_Oligo PF09036.10 gi|320100452|ref|YP_004176044.1| - 0.31 11.1 8.0 2.1 8.4 0.8 3.1 2 1 2 4 4 2 0 Bcr-Abl oncoprotein oligomerisation domain Lectin_N PF03954.14 gi|320100452|ref|YP_004176044.1| - 0.32 10.7 3.9 0.45 10.3 0.5 2.2 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain Tropomyosin PF00261.20 gi|320100452|ref|YP_004176044.1| - 0.36 10.2 18.7 0.36 10.2 16.0 1.8 1 1 0 1 1 1 0 Tropomyosin Fmp27_WPPW PF10359.9 gi|320100452|ref|YP_004176044.1| - 0.38 9.5 5.9 0.43 9.4 5.6 1.3 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain FlgN PF05130.12 gi|320100452|ref|YP_004176044.1| - 0.43 11.1 10.3 0.18 12.3 7.6 1.7 2 0 0 2 2 1 0 FlgN protein Uso1_p115_C PF04871.13 gi|320100452|ref|YP_004176044.1| - 0.47 10.8 12.8 0.42 11.0 11.2 1.8 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region FliJ PF02050.16 gi|320100452|ref|YP_004176044.1| - 0.47 10.7 11.3 0.12 12.6 8.1 1.7 2 0 0 2 2 1 0 Flagellar FliJ protein SKA1 PF07160.12 gi|320100452|ref|YP_004176044.1| - 0.59 9.9 7.7 0.88 9.4 5.2 2.3 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 FmiP_Thoc5 PF09766.9 gi|320100452|ref|YP_004176044.1| - 0.63 9.3 8.1 1.3 8.2 5.3 2.0 1 1 1 2 2 2 0 Fms-interacting protein/Thoc5 Spectrin PF00435.21 gi|320100452|ref|YP_004176044.1| - 0.67 10.5 11.8 0.3 11.6 9.0 1.9 2 1 0 2 2 1 0 Spectrin repeat Syntaxin-6_N PF09177.11 gi|320100452|ref|YP_004176044.1| - 0.67 10.5 6.9 0.91 10.1 4.3 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF5320 PF17253.2 gi|320100452|ref|YP_004176044.1| - 0.7 11.0 9.0 7.4 7.7 1.4 3.0 3 0 0 3 3 2 0 Family of unknown function (DUF5320) Cep57_MT_bd PF06657.13 gi|320100452|ref|YP_004176044.1| - 0.77 10.3 8.9 3.7 8.1 7.8 2.3 1 1 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 zf-C4H2 PF10146.9 gi|320100452|ref|YP_004176044.1| - 0.77 10.0 10.8 0.58 10.4 7.6 1.9 1 1 0 2 2 2 0 Zinc finger-containing protein ACCA PF03255.14 gi|320100452|ref|YP_004176044.1| - 0.78 9.6 4.1 0.71 9.7 2.0 2.1 2 0 0 2 2 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Mod_r PF07200.13 gi|320100452|ref|YP_004176044.1| - 0.8 9.8 9.4 2.3 8.3 9.4 1.9 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Sec8_exocyst PF04048.14 gi|320100452|ref|YP_004176044.1| - 0.87 9.5 5.5 11 5.9 0.3 2.4 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain OmpH PF03938.14 gi|320100452|ref|YP_004176044.1| - 0.89 9.9 10.5 1.2 9.5 8.9 1.9 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Prominin PF05478.11 gi|320100452|ref|YP_004176044.1| - 0.91 7.4 4.2 1.2 7.0 3.5 1.4 1 1 1 2 2 2 0 Prominin NBD94 PF16830.5 gi|320100452|ref|YP_004176044.1| - 0.93 9.9 4.7 68 3.9 0.1 3.3 3 0 0 3 3 3 0 Nucleotide-Binding Domain 94 of RH Vps5 PF09325.10 gi|320100452|ref|YP_004176044.1| - 0.97 8.9 9.2 4.8 6.7 1.4 2.2 1 1 0 2 2 2 0 Vps5 C terminal like SlyX PF04102.12 gi|320100452|ref|YP_004176044.1| - 1.1 10.0 9.4 1.1 9.9 2.7 2.6 1 1 1 2 2 2 0 SlyX DivIC PF04977.15 gi|320100452|ref|YP_004176044.1| - 1.3 8.9 11.7 2.2 8.1 6.4 2.6 1 1 1 2 2 2 0 Septum formation initiator Sec34 PF04136.15 gi|320100452|ref|YP_004176044.1| - 1.5 8.7 4.5 5.5 6.9 1.0 2.0 1 1 0 2 2 2 0 Sec34-like family DUF2203 PF09969.9 gi|320100452|ref|YP_004176044.1| - 1.6 9.5 6.6 3.7 8.3 6.6 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Rx_N PF18052.1 gi|320100452|ref|YP_004176044.1| - 1.8 8.9 8.6 36 4.7 2.2 3.2 1 1 1 2 2 2 0 Rx N-terminal domain HMMR_N PF15905.5 gi|320100452|ref|YP_004176044.1| - 2.2 7.7 16.1 1 8.8 11.8 2.1 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal HIP1_clath_bdg PF16515.5 gi|320100452|ref|YP_004176044.1| - 2.5 8.8 16.0 2 9.1 10.5 2.7 2 1 0 2 2 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 TSC22 PF01166.18 gi|320100452|ref|YP_004176044.1| - 2.5 8.5 6.7 2 8.8 1.0 3.2 1 1 1 2 2 2 0 TSC-22/dip/bun family Seryl_tRNA_N PF02403.22 gi|320100452|ref|YP_004176044.1| - 2.6 8.3 10.2 5.2 7.4 9.9 1.8 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Occludin_ELL PF07303.13 gi|320100452|ref|YP_004176044.1| - 2.6 8.8 5.9 2 9.2 3.1 2.1 2 1 0 2 2 1 0 Occludin homology domain YabA PF06156.13 gi|320100452|ref|YP_004176044.1| - 2.7 8.7 10.4 0.97 10.1 6.7 2.2 2 1 0 2 2 1 0 Initiation control protein YabA GrpE PF01025.19 gi|320100452|ref|YP_004176044.1| - 2.7 7.6 10.0 5.9 6.5 9.2 1.8 1 1 1 2 2 2 0 GrpE DUF3552 PF12072.8 gi|320100452|ref|YP_004176044.1| - 2.7 7.3 16.0 3.9 6.8 15.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) CSN5_C PF18323.1 gi|320100452|ref|YP_004176044.1| - 2.7 8.9 5.7 1.1 10.3 2.9 1.7 2 0 0 2 2 1 0 Cop9 signalosome subunit 5 C-terminal domain ZapB PF06005.12 gi|320100452|ref|YP_004176044.1| - 3 8.4 15.6 51 4.4 1.1 2.6 1 1 1 2 2 2 0 Cell division protein ZapB Nup54 PF13874.6 gi|320100452|ref|YP_004176044.1| - 3.1 7.9 9.1 6.2 6.9 1.9 2.1 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 Med9 PF07544.13 gi|320100452|ref|YP_004176044.1| - 3.7 7.7 9.3 9.1 6.5 0.7 2.8 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 CdvA PF18822.1 gi|320100452|ref|YP_004176044.1| - 4.3 7.2 14.0 1.3 8.9 3.0 3.4 1 1 3 4 4 3 0 CdvA-like coiled-coil domain Spc24 PF08286.11 gi|320100452|ref|YP_004176044.1| - 4.6 7.5 11.3 6.3 7.1 3.7 2.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Cnn_1N PF07989.11 gi|320100452|ref|YP_004176044.1| - 4.7 7.4 13.1 20 5.4 11.3 2.6 1 1 2 3 3 2 0 Centrosomin N-terminal motif 1 CENP-Q PF13094.6 gi|320100452|ref|YP_004176044.1| - 5 7.3 20.7 0.95 9.6 16.3 2.0 2 1 0 2 2 1 0 CENP-Q, a CENPA-CAD centromere complex subunit ERM PF00769.19 gi|320100452|ref|YP_004176044.1| - 5.2 6.8 17.9 11 5.7 17.9 1.7 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Csm1_N PF18504.1 gi|320100452|ref|YP_004176044.1| - 5.6 7.4 12.6 20 5.6 5.3 2.8 1 1 0 2 2 2 0 Csm1 N-terminal domain DUF4140 PF13600.6 gi|320100452|ref|YP_004176044.1| - 5.6 7.5 9.2 3.1e+02 1.9 8.7 2.6 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) CREPT PF16566.5 gi|320100452|ref|YP_004176044.1| - 5.9 7.1 9.9 18 5.5 5.3 2.2 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Tho2 PF11262.8 gi|320100452|ref|YP_004176044.1| - 5.9 6.0 6.2 0.93 8.6 2.5 1.5 2 0 0 2 2 1 0 Transcription factor/nuclear export subunit protein 2 CLZ PF16526.5 gi|320100452|ref|YP_004176044.1| - 6.1 7.3 18.4 0.74 10.2 3.6 3.4 2 1 0 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF4446 PF14584.6 gi|320100452|ref|YP_004176044.1| - 8.3 6.4 8.8 9.8 6.1 1.1 2.4 2 1 1 3 3 2 0 Protein of unknown function (DUF4446) XhlA PF10779.9 gi|320100452|ref|YP_004176044.1| - 8.3 6.7 13.6 0.73 10.1 3.0 3.0 2 1 1 3 3 3 0 Haemolysin XhlA Exonuc_VII_S PF02609.16 gi|320100452|ref|YP_004176044.1| - 8.4 6.6 17.1 1.8 8.7 2.5 3.6 3 1 0 3 3 2 0 Exonuclease VII small subunit CENP-H PF05837.12 gi|320100452|ref|YP_004176044.1| - 8.6 6.8 11.8 9.8 6.6 8.7 2.1 1 1 1 2 2 2 0 Centromere protein H (CENP-H) TMF_DNA_bd PF12329.8 gi|320100452|ref|YP_004176044.1| - 9.3 6.3 19.7 0.51 10.4 13.4 2.2 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding TatD_DNase PF01026.21 gi|320100454|ref|YP_004176046.1| - 3.9e-41 141.1 0.0 4.5e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase PALP PF00291.25 gi|320100455|ref|YP_004176047.1| - 0.13 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme HAD_2 PF13419.6 gi|320100456|ref|YP_004176048.1| - 2.5e-11 44.0 0.0 5e-11 43.0 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|320100456|ref|YP_004176048.1| - 0.00041 20.4 0.0 0.00069 19.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|320100456|ref|YP_004176048.1| - 0.057 13.8 0.0 0.074 13.4 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|320100456|ref|YP_004176048.1| - 0.061 13.6 0.0 0.083 13.2 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase ALS_ss_C PF10369.9 gi|320100457|ref|YP_004176049.1| - 0.024 14.8 0.2 0.039 14.2 0.2 1.4 1 1 0 1 1 1 0 Small subunit of acetolactate synthase Stork_head PF10264.9 gi|320100457|ref|YP_004176049.1| - 0.04 14.1 0.0 0.56 10.4 0.0 2.1 1 1 1 2 2 2 0 Winged helix Storkhead-box1 domain DUF4423 PF14394.6 gi|320100457|ref|YP_004176049.1| - 0.044 13.5 0.1 0.38 10.4 0.0 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4423) YtzH PF14165.6 gi|320100457|ref|YP_004176049.1| - 0.089 13.2 0.1 0.11 12.9 0.1 1.3 1 0 0 1 1 1 0 YtzH-like protein RPA_C PF08784.11 gi|320100457|ref|YP_004176049.1| - 0.1 13.2 0.0 0.14 12.8 0.0 1.3 1 1 0 1 1 1 0 Replication protein A C terminal TBPIP PF07106.13 gi|320100457|ref|YP_004176049.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain DUF4574 PF15141.6 gi|320100457|ref|YP_004176049.1| - 0.11 12.4 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 Radical_SAM PF04055.21 gi|320100458|ref|YP_004176050.1| - 1.7e-24 87.1 0.1 5.9e-24 85.3 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|320100458|ref|YP_004176050.1| - 3.1e-08 33.7 0.1 6.9e-08 32.6 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain Acetyltransf_6 PF13480.7 gi|320100458|ref|YP_004176050.1| - 0.086 13.0 0.2 14 5.9 0.0 2.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain MarR_2 PF12802.7 gi|320100459|ref|YP_004176051.1| - 3.3e-08 33.3 0.0 6e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|320100459|ref|YP_004176051.1| - 2.2e-07 30.7 0.1 4.3e-07 29.8 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|320100459|ref|YP_004176051.1| - 2.9e-05 23.8 0.3 6.2e-05 22.8 0.2 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|320100459|ref|YP_004176051.1| - 4.9e-05 23.6 0.1 7.9e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|320100459|ref|YP_004176051.1| - 6.3e-05 23.1 0.1 0.00015 21.9 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|320100459|ref|YP_004176051.1| - 7.5e-05 22.5 0.5 7.5e-05 22.5 0.5 1.5 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|320100459|ref|YP_004176051.1| - 9.9e-05 21.8 0.2 0.00028 20.4 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|320100459|ref|YP_004176051.1| - 0.00019 21.4 0.0 0.00028 20.8 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|320100459|ref|YP_004176051.1| - 0.00049 20.2 0.0 0.00066 19.8 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DprA_WH PF17782.1 gi|320100459|ref|YP_004176051.1| - 0.00053 20.0 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 DprA winged helix domain HTH_36 PF13730.6 gi|320100459|ref|YP_004176051.1| - 0.00062 19.7 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|320100459|ref|YP_004176051.1| - 0.0013 18.6 0.1 0.0026 17.6 0.1 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.12 gi|320100459|ref|YP_004176051.1| - 0.0018 18.2 0.1 0.0027 17.6 0.1 1.3 1 0 0 1 1 1 1 HTH domain RNA_pol_Rpc34 PF05158.12 gi|320100459|ref|YP_004176051.1| - 0.0025 17.3 1.6 0.056 12.8 0.1 2.0 1 1 1 2 2 2 1 RNA polymerase Rpc34 subunit GntR PF00392.21 gi|320100459|ref|YP_004176051.1| - 0.0028 17.2 0.0 0.019 14.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Trans_reg_C PF00486.28 gi|320100459|ref|YP_004176051.1| - 0.0069 16.4 0.0 0.018 15.1 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal HTH_20 PF12840.7 gi|320100459|ref|YP_004176051.1| - 0.0076 16.3 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain z-alpha PF02295.17 gi|320100459|ref|YP_004176051.1| - 0.0084 16.1 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain HTH_micro PF17007.5 gi|320100459|ref|YP_004176051.1| - 0.015 14.1 0.0 0.016 14.1 0.0 1.0 1 0 0 1 1 1 0 HTH-like HTH_CodY PF08222.11 gi|320100459|ref|YP_004176051.1| - 0.026 14.1 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_IclR PF09339.10 gi|320100459|ref|YP_004176051.1| - 0.082 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|320100459|ref|YP_004176051.1| - 0.092 13.3 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Translin PF01997.16 gi|320100460|ref|YP_004176052.1| - 5.4e-11 42.9 0.0 4e-09 36.8 0.0 2.1 1 1 0 1 1 1 1 Translin family ADSL_C PF10397.9 gi|320100460|ref|YP_004176052.1| - 0.088 13.4 0.7 0.94 10.1 0.7 2.4 1 1 0 1 1 1 0 Adenylosuccinate lyase C-terminus HEPN PF05168.14 gi|320100460|ref|YP_004176052.1| - 0.095 12.8 0.4 0.24 11.6 0.0 1.8 2 0 0 2 2 2 0 HEPN domain FlaC_arch PF05377.11 gi|320100461|ref|YP_004176053.1| - 0.0017 18.7 0.4 0.0046 17.3 0.4 1.8 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Fib_alpha PF08702.10 gi|320100461|ref|YP_004176053.1| - 0.0086 16.3 0.2 0.013 15.7 0.2 1.2 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|320100461|ref|YP_004176053.1| - 0.014 15.7 0.3 0.028 14.7 0.3 1.5 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4795 PF16043.5 gi|320100461|ref|YP_004176053.1| - 0.014 15.0 0.4 0.027 14.1 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Laminin_II PF06009.12 gi|320100461|ref|YP_004176053.1| - 0.017 15.1 0.1 0.027 14.5 0.1 1.2 1 0 0 1 1 1 0 Laminin Domain II Phage_GPO PF05929.11 gi|320100461|ref|YP_004176053.1| - 0.027 14.1 0.3 0.04 13.5 0.3 1.2 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Selenoprotein_S PF06936.11 gi|320100461|ref|YP_004176053.1| - 0.052 13.4 0.9 0.073 12.9 0.9 1.3 1 0 0 1 1 1 0 Selenoprotein S (SelS) Lebercilin PF15619.6 gi|320100461|ref|YP_004176053.1| - 0.053 13.2 2.7 0.079 12.6 2.7 1.3 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease SKA2 PF16740.5 gi|320100461|ref|YP_004176053.1| - 0.064 13.0 0.3 0.13 12.1 0.3 1.5 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 Phasin PF05597.11 gi|320100461|ref|YP_004176053.1| - 0.073 13.1 1.1 0.14 12.1 1.1 1.6 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) TRAF_BIRC3_bd PF16673.5 gi|320100461|ref|YP_004176053.1| - 0.11 12.3 2.9 0.26 11.1 2.9 1.7 1 0 0 1 1 1 0 TNF receptor-associated factor BIRC3 binding domain DUF1664 PF07889.12 gi|320100461|ref|YP_004176053.1| - 0.12 12.4 0.1 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) APG6_N PF17675.1 gi|320100461|ref|YP_004176053.1| - 0.25 11.9 6.5 0.55 10.8 6.5 1.5 1 0 0 1 1 1 0 Apg6 coiled-coil region Spc7 PF08317.11 gi|320100461|ref|YP_004176053.1| - 1.1 8.1 5.7 0.23 10.3 2.5 1.4 2 0 0 2 2 2 0 Spc7 kinetochore protein Gag_p17 PF00540.18 gi|320100462|ref|YP_004176054.1| - 0.17 11.8 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 gag gene protein p17 (matrix protein) Lactamase_B_2 PF12706.7 gi|320100463|ref|YP_004176055.1| - 1.8e-08 34.1 0.0 3.3e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|320100463|ref|YP_004176055.1| - 1 9.3 7.1 0.85 9.6 3.1 2.6 2 1 0 2 2 2 0 Metallo-beta-lactamase superfamily Glycos_transf_1 PF00534.20 gi|320100464|ref|YP_004176056.1| - 3.6e-24 85.2 0.0 6e-24 84.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|320100464|ref|YP_004176056.1| - 1.1e-12 48.5 0.0 1.6e-12 48.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|320100464|ref|YP_004176056.1| - 1.1e-10 41.8 0.8 5.6e-09 36.2 0.1 2.9 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|320100464|ref|YP_004176056.1| - 0.0073 16.7 0.0 0.03 14.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 CbiQ PF02361.16 gi|320100465|ref|YP_004176057.1| - 7.4e-08 32.3 4.8 1.1e-07 31.7 4.8 1.2 1 0 0 1 1 1 1 Cobalt transport protein PHO4 PF01384.20 gi|320100465|ref|YP_004176057.1| - 0.12 11.4 3.3 0.34 9.9 3.3 1.8 1 1 0 1 1 1 0 Phosphate transporter family ABC_tran PF00005.27 gi|320100466|ref|YP_004176058.1| - 1.1e-40 139.3 0.0 5.1e-19 69.2 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|320100466|ref|YP_004176058.1| - 9.2e-24 84.8 8.9 3.1e-10 40.4 0.0 4.1 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100466|ref|YP_004176058.1| - 4.5e-10 39.3 0.0 0.017 14.6 0.0 4.0 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|320100466|ref|YP_004176058.1| - 1.6e-09 37.4 0.4 8.9e-05 22.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|320100466|ref|YP_004176058.1| - 4.5e-08 32.9 0.3 0.0023 17.5 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|320100466|ref|YP_004176058.1| - 3.5e-07 30.1 0.1 0.0014 18.4 0.0 2.7 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|320100466|ref|YP_004176058.1| - 3.7e-07 30.7 0.3 0.013 15.9 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|320100466|ref|YP_004176058.1| - 2.5e-06 27.8 0.4 0.012 15.9 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_15 PF13175.6 gi|320100466|ref|YP_004176058.1| - 4.4e-06 26.7 0.0 0.0002 21.2 0.0 2.8 4 0 0 4 4 3 1 AAA ATPase domain AAA_23 PF13476.6 gi|320100466|ref|YP_004176058.1| - 4.7e-06 27.3 0.0 0.0028 18.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|320100466|ref|YP_004176058.1| - 5.2e-06 26.7 0.1 0.0034 17.6 0.0 2.6 2 1 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|320100466|ref|YP_004176058.1| - 6.8e-05 22.1 0.0 0.41 9.7 0.0 2.6 3 0 0 3 3 2 2 Type II/IV secretion system protein NACHT PF05729.12 gi|320100466|ref|YP_004176058.1| - 0.00012 22.1 0.9 0.3 11.0 0.1 2.4 2 0 0 2 2 2 2 NACHT domain AAA_7 PF12775.7 gi|320100466|ref|YP_004176058.1| - 0.00012 21.7 0.1 0.25 10.8 0.0 2.2 2 0 0 2 2 2 2 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|320100466|ref|YP_004176058.1| - 0.00012 21.8 0.0 2.2 8.0 0.0 3.8 4 0 0 4 4 4 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|320100466|ref|YP_004176058.1| - 0.00016 21.5 0.1 0.52 10.0 0.1 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|320100466|ref|YP_004176058.1| - 0.00022 20.7 0.3 0.46 9.8 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|320100466|ref|YP_004176058.1| - 0.00031 20.7 0.1 0.1 12.5 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase NTPase_1 PF03266.15 gi|320100466|ref|YP_004176058.1| - 0.00055 19.9 2.8 0.43 10.5 0.1 3.0 3 0 0 3 3 3 2 NTPase AAA_19 PF13245.6 gi|320100466|ref|YP_004176058.1| - 0.00068 20.0 0.3 1.6 9.1 0.1 2.6 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 gi|320100466|ref|YP_004176058.1| - 0.0009 19.7 0.2 0.84 10.1 0.0 3.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|320100466|ref|YP_004176058.1| - 0.0012 19.1 0.0 0.84 10.1 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_14 PF13173.6 gi|320100466|ref|YP_004176058.1| - 0.0015 18.6 0.0 0.52 10.4 0.0 3.1 3 0 0 3 3 3 1 AAA domain cobW PF02492.19 gi|320100466|ref|YP_004176058.1| - 0.0017 18.0 2.6 0.75 9.4 0.2 2.7 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|320100466|ref|YP_004176058.1| - 0.0017 18.9 0.3 0.56 10.8 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|320100466|ref|YP_004176058.1| - 0.0026 17.8 1.3 0.39 10.7 0.1 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) TsaE PF02367.17 gi|320100466|ref|YP_004176058.1| - 0.0032 17.4 0.1 3.5 7.7 0.0 2.3 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 gi|320100466|ref|YP_004176058.1| - 0.0038 17.2 0.0 0.22 11.4 0.0 2.2 2 0 0 2 2 2 1 Rad17 P-loop domain Pox_A32 PF04665.12 gi|320100466|ref|YP_004176058.1| - 0.0053 16.3 1.0 0.27 10.7 0.2 2.2 2 0 0 2 2 2 1 Poxvirus A32 protein SRP54 PF00448.22 gi|320100466|ref|YP_004176058.1| - 0.0062 16.2 0.8 0.14 11.8 0.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.18 gi|320100466|ref|YP_004176058.1| - 0.016 14.6 0.1 3 7.1 0.0 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family PRK PF00485.18 gi|320100466|ref|YP_004176058.1| - 0.018 14.8 0.0 3.8 7.2 0.0 2.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ATPase_2 PF01637.18 gi|320100466|ref|YP_004176058.1| - 0.026 14.5 0.0 7.2 6.4 0.0 2.3 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea ATP_bind_1 PF03029.17 gi|320100466|ref|YP_004176058.1| - 0.031 14.1 0.5 2.4 7.9 0.0 2.5 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.22 gi|320100466|ref|YP_004176058.1| - 0.036 13.2 0.1 0.85 8.7 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain PhoH PF02562.16 gi|320100466|ref|YP_004176058.1| - 0.04 13.4 0.1 4.4 6.7 0.0 2.4 2 1 0 2 2 2 0 PhoH-like protein Dynamin_N PF00350.23 gi|320100466|ref|YP_004176058.1| - 0.041 13.9 0.1 1.8 8.6 0.1 2.3 2 0 0 2 2 2 0 Dynamin family APS_kinase PF01583.20 gi|320100466|ref|YP_004176058.1| - 0.062 13.2 0.2 6.3 6.7 0.0 2.7 3 0 0 3 3 2 0 Adenylylsulphate kinase Cytidylate_kin PF02224.18 gi|320100466|ref|YP_004176058.1| - 0.07 12.9 0.1 0.38 10.5 0.0 2.0 2 0 0 2 2 2 0 Cytidylate kinase PIF1 PF05970.14 gi|320100466|ref|YP_004176058.1| - 0.077 12.2 0.1 2.9 7.0 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase AAA_28 PF13521.6 gi|320100466|ref|YP_004176058.1| - 0.088 13.0 2.8 0.66 10.2 0.2 2.7 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|320100466|ref|YP_004176058.1| - 0.11 12.3 0.0 4.7 6.9 0.0 2.5 3 0 0 3 3 2 0 AAA domain MobB PF03205.14 gi|320100466|ref|YP_004176058.1| - 0.15 12.0 0.9 14 5.6 0.1 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATPase PF06745.13 gi|320100466|ref|YP_004176058.1| - 0.15 11.4 0.2 13 5.1 0.1 2.2 2 0 0 2 2 2 0 KaiC TIP49 PF06068.13 gi|320100466|ref|YP_004176058.1| - 0.24 10.5 0.6 4.5 6.4 0.1 2.7 3 0 0 3 3 3 0 TIP49 P-loop domain AAA_10 PF12846.7 gi|320100466|ref|YP_004176058.1| - 0.28 10.1 0.1 1.7 7.5 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.23 gi|320100466|ref|YP_004176058.1| - 0.46 10.6 2.4 0.92 9.6 0.2 2.4 3 0 0 3 3 2 0 50S ribosome-binding GTPase AA_permease_2 PF13520.6 gi|320100467|ref|YP_004176059.1| - 2.9e-17 62.7 48.5 5.7e-17 61.7 48.5 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|320100467|ref|YP_004176059.1| - 7.6e-07 28.1 58.2 3.4e-05 22.6 58.2 3.5 1 1 0 1 1 1 1 Amino acid permease DUF357 PF04010.13 gi|320100469|ref|YP_004176061.1| - 1.8e-19 69.6 0.1 2.7e-19 69.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|320100469|ref|YP_004176061.1| - 8.4e-13 48.7 0.0 2.8e-12 47.0 0.0 1.7 2 0 0 2 2 2 1 Cytidylyltransferase-like FMN_red PF03358.15 gi|320100470|ref|YP_004176062.1| - 2.7e-28 98.7 0.0 3.7e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|320100470|ref|YP_004176062.1| - 5e-12 46.0 0.0 7.9e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold NUDIX PF00293.28 gi|320100471|ref|YP_004176063.1| - 2.4e-22 79.4 0.0 3.1e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain ECF-ribofla_trS PF07155.12 gi|320100472|ref|YP_004176064.1| - 3.4e-26 92.3 20.0 6.9e-19 68.5 9.1 2.1 1 1 1 2 2 2 2 ECF-type riboflavin transporter, S component DUF1427 PF07235.11 gi|320100472|ref|YP_004176064.1| - 4.1 7.4 7.3 0.36 10.8 1.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1427) ABC_tran PF00005.27 gi|320100473|ref|YP_004176065.1| - 2.4e-41 141.5 0.0 2.4e-19 70.2 0.0 2.9 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|320100473|ref|YP_004176065.1| - 2e-17 63.9 0.1 9e-06 25.7 0.0 3.8 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|320100473|ref|YP_004176065.1| - 1.5e-09 37.4 1.0 0.0012 18.5 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|320100473|ref|YP_004176065.1| - 1.5e-08 35.2 0.1 0.00069 20.0 0.0 3.0 3 0 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 gi|320100473|ref|YP_004176065.1| - 1.3e-07 32.3 0.9 0.013 16.0 0.1 2.1 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|320100473|ref|YP_004176065.1| - 3e-07 30.3 3.3 0.0042 16.8 0.0 3.1 2 2 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|320100473|ref|YP_004176065.1| - 5.7e-07 29.6 3.1 0.0069 16.3 0.2 3.4 4 0 0 4 4 4 2 NTPase AAA_22 PF13401.6 gi|320100473|ref|YP_004176065.1| - 3.1e-06 27.5 0.8 0.0097 16.2 0.1 2.9 3 0 0 3 3 3 2 AAA domain SMC_N PF02463.19 gi|320100473|ref|YP_004176065.1| - 5e-06 26.1 0.0 0.48 9.8 0.0 3.7 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|320100473|ref|YP_004176065.1| - 2.8e-05 24.1 0.2 0.025 14.5 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase AAA_25 PF13481.6 gi|320100473|ref|YP_004176065.1| - 3.6e-05 23.4 2.4 0.69 9.4 0.1 3.7 4 0 0 4 4 4 2 AAA domain AAA_18 PF13238.6 gi|320100473|ref|YP_004176065.1| - 9.4e-05 23.0 0.8 0.035 14.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain T2SSE PF00437.20 gi|320100473|ref|YP_004176065.1| - 0.00026 20.2 0.5 0.0072 15.4 0.1 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_19 PF13245.6 gi|320100473|ref|YP_004176065.1| - 0.00081 19.8 1.1 0.12 12.8 0.1 2.4 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|320100473|ref|YP_004176065.1| - 0.00082 18.8 0.8 0.097 12.0 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|320100473|ref|YP_004176065.1| - 0.0014 18.6 0.3 0.043 13.7 0.0 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain NACHT PF05729.12 gi|320100473|ref|YP_004176065.1| - 0.0016 18.4 3.2 0.3 11.0 0.1 2.5 2 0 0 2 2 2 1 NACHT domain Zeta_toxin PF06414.12 gi|320100473|ref|YP_004176065.1| - 0.0016 17.7 0.3 1.2 8.3 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin cobW PF02492.19 gi|320100473|ref|YP_004176065.1| - 0.0017 18.0 6.6 0.05 13.2 0.4 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|320100473|ref|YP_004176065.1| - 0.0018 18.1 0.3 0.53 10.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|320100473|ref|YP_004176065.1| - 0.0019 18.2 1.9 1.3 9.1 0.1 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|320100473|ref|YP_004176065.1| - 0.0019 18.4 2.1 0.18 12.0 0.0 2.8 3 0 0 3 3 3 1 AAA domain MMR_HSR1 PF01926.23 gi|320100473|ref|YP_004176065.1| - 0.0019 18.2 0.4 1.8 8.7 0.0 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase MobB PF03205.14 gi|320100473|ref|YP_004176065.1| - 0.002 18.0 1.9 0.55 10.1 0.1 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|320100473|ref|YP_004176065.1| - 0.002 18.4 3.0 0.67 10.2 0.4 3.2 3 0 0 3 3 3 1 AAA domain SbcCD_C PF13558.6 gi|320100473|ref|YP_004176065.1| - 0.0023 18.1 0.2 5.5 7.3 0.0 3.4 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 gi|320100473|ref|YP_004176065.1| - 0.003 17.5 0.3 0.21 11.4 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea PRK PF00485.18 gi|320100473|ref|YP_004176065.1| - 0.0038 17.0 0.3 0.69 9.6 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|320100473|ref|YP_004176065.1| - 0.0061 17.0 2.2 0.96 9.9 0.1 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|320100473|ref|YP_004176065.1| - 0.0061 16.3 0.0 1.7 8.3 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain AAA_27 PF13514.6 gi|320100473|ref|YP_004176065.1| - 0.013 15.1 0.1 5.1 6.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|320100473|ref|YP_004176065.1| - 0.014 15.5 0.7 1.3 9.0 0.1 2.5 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|320100473|ref|YP_004176065.1| - 0.014 14.3 0.9 1.9 7.2 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) RNA_helicase PF00910.22 gi|320100473|ref|YP_004176065.1| - 0.015 15.7 0.1 2.4 8.6 0.0 2.3 2 0 0 2 2 2 0 RNA helicase MeaB PF03308.16 gi|320100473|ref|YP_004176065.1| - 0.017 14.1 0.6 1.8 7.5 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|320100473|ref|YP_004176065.1| - 0.017 15.1 2.5 0.89 9.6 0.1 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|320100473|ref|YP_004176065.1| - 0.021 14.3 0.5 0.35 10.3 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|320100473|ref|YP_004176065.1| - 0.031 13.4 1.1 4.1 6.5 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain DUF4350 PF14258.6 gi|320100473|ref|YP_004176065.1| - 0.032 14.7 1.4 0.1 13.0 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) APS_kinase PF01583.20 gi|320100473|ref|YP_004176065.1| - 0.039 13.9 0.6 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase ATP_bind_1 PF03029.17 gi|320100473|ref|YP_004176065.1| - 0.045 13.5 1.8 0.75 9.5 0.2 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein dNK PF01712.19 gi|320100473|ref|YP_004176065.1| - 0.051 13.4 0.3 10 5.9 0.1 2.2 2 0 0 2 2 2 0 Deoxynucleoside kinase IstB_IS21 PF01695.17 gi|320100473|ref|YP_004176065.1| - 0.054 13.2 0.4 1.3 8.8 0.0 2.8 4 0 0 4 4 3 0 IstB-like ATP binding protein PduV-EutP PF10662.9 gi|320100473|ref|YP_004176065.1| - 0.064 13.0 1.6 2.2 8.0 0.1 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation PhoH PF02562.16 gi|320100473|ref|YP_004176065.1| - 0.12 11.8 0.6 13 5.2 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_13 PF13166.6 gi|320100473|ref|YP_004176065.1| - 0.15 10.7 0.2 2.3 6.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain Herpes_Helicase PF02689.14 gi|320100473|ref|YP_004176065.1| - 0.18 9.7 0.1 0.44 8.4 0.0 1.7 2 0 0 2 2 2 0 Helicase PIF1 PF05970.14 gi|320100473|ref|YP_004176065.1| - 0.3 10.2 0.2 8.9 5.4 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase SRP54 PF00448.22 gi|320100473|ref|YP_004176065.1| - 0.42 10.2 4.0 8.6 5.9 0.5 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF3584 PF12128.8 gi|320100473|ref|YP_004176065.1| - 0.57 7.6 2.2 1.4 6.3 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) DEAD PF00270.29 gi|320100475|ref|YP_004176067.1| - 3.2e-26 92.2 0.0 9.6e-25 87.3 0.0 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|320100475|ref|YP_004176067.1| - 1.2e-16 61.0 0.0 6.1e-16 58.7 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|320100475|ref|YP_004176067.1| - 5.4e-13 49.5 0.8 1.6e-12 48.0 0.8 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|320100475|ref|YP_004176067.1| - 1.4e-05 25.2 0.0 4.6e-05 23.5 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|320100475|ref|YP_004176067.1| - 0.0046 16.7 0.0 0.017 14.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|320100475|ref|YP_004176067.1| - 0.01 16.2 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain UvrD-helicase PF00580.21 gi|320100475|ref|YP_004176067.1| - 0.31 10.5 0.0 0.5 9.8 0.0 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Viral_P18 PF04521.13 gi|320100476|ref|YP_004176068.1| - 0.0025 17.6 0.0 0.0029 17.4 0.0 1.0 1 0 0 1 1 1 1 ssRNA positive strand viral 18kD cysteine rich protein PmbA_TldD PF01523.16 gi|320100477|ref|YP_004176069.1| - 2e-56 191.9 0.1 2.5e-56 191.6 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Ribosomal_L27 PF01016.19 gi|320100477|ref|YP_004176069.1| - 0.07 13.2 0.0 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 Ribosomal L27 protein PmbA_TldD PF01523.16 gi|320100478|ref|YP_004176070.1| - 3e-45 155.3 0.1 3.7e-45 154.9 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase BPL_LplA_LipB PF03099.19 gi|320100479|ref|YP_004176071.1| - 2.9e-09 36.9 0.5 4.6e-09 36.3 0.5 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|320100479|ref|YP_004176071.1| - 5.9e-07 29.3 0.3 1.2e-06 28.2 0.3 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain Aim19 PF10315.9 gi|320100479|ref|YP_004176071.1| - 0.035 14.4 0.7 0.063 13.6 0.7 1.4 1 0 0 1 1 1 0 Altered inheritance of mitochondria protein 19 CxxCxxCC PF03692.15 gi|320100480|ref|YP_004176072.1| - 1.2e-07 32.3 0.2 3.9e-07 30.7 0.2 1.9 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain PqqD PF05402.12 gi|320100480|ref|YP_004176072.1| - 0.087 13.1 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) CTP_transf_like PF01467.26 gi|320100481|ref|YP_004176073.1| - 1.8e-10 41.1 0.0 1e-09 38.7 0.0 2.1 1 1 1 2 2 2 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|320100481|ref|YP_004176073.1| - 2.6e-05 23.6 0.0 0.0041 16.4 0.1 2.1 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase FtsL PF04999.13 gi|320100482|ref|YP_004176074.1| - 0.056 13.4 0.4 0.095 12.7 0.4 1.3 1 0 0 1 1 1 0 Cell division protein FtsL DUF1707 PF08044.11 gi|320100482|ref|YP_004176074.1| - 0.064 13.3 0.1 0.24 11.5 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF1707) HD PF01966.22 gi|320100485|ref|YP_004176077.1| - 7.3e-12 45.6 0.2 1.7e-11 44.4 0.2 1.6 1 0 0 1 1 1 1 HD domain HTH_IclR PF09339.10 gi|320100486|ref|YP_004176078.1| - 1.6e-07 31.0 0.0 2.1e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|320100486|ref|YP_004176078.1| - 9.5e-06 25.6 0.1 1.1e-05 25.4 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|320100486|ref|YP_004176078.1| - 6.5e-05 22.7 0.0 7.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 MarR family FaeA PF04703.12 gi|320100486|ref|YP_004176078.1| - 0.00013 22.3 0.0 0.00015 22.1 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein LexA_DNA_bind PF01726.16 gi|320100486|ref|YP_004176078.1| - 0.00014 21.5 0.1 0.00016 21.4 0.1 1.0 1 0 0 1 1 1 1 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|320100486|ref|YP_004176078.1| - 0.00034 20.5 0.1 0.00045 20.1 0.1 1.3 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|320100486|ref|YP_004176078.1| - 0.00069 19.1 0.0 0.00077 19.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HrcA_DNA-bdg PF03444.15 gi|320100486|ref|YP_004176078.1| - 0.0011 18.5 0.0 0.0013 18.4 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Sigma70_r4_2 PF08281.12 gi|320100486|ref|YP_004176078.1| - 0.0014 18.2 0.1 0.0025 17.4 0.0 1.4 2 0 0 2 2 2 1 Sigma-70, region 4 TrmB PF01978.19 gi|320100486|ref|YP_004176078.1| - 0.0015 18.4 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|320100486|ref|YP_004176078.1| - 0.0015 18.3 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|320100486|ref|YP_004176078.1| - 0.0026 17.4 0.1 0.0033 17.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|320100486|ref|YP_004176078.1| - 0.0031 17.8 0.0 0.0033 17.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator DprA_WH PF17782.1 gi|320100486|ref|YP_004176078.1| - 0.0058 16.7 0.0 0.0066 16.5 0.0 1.1 1 0 0 1 1 1 1 DprA winged helix domain HTH_28 PF13518.6 gi|320100486|ref|YP_004176078.1| - 0.01 16.0 0.1 0.013 15.7 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|320100486|ref|YP_004176078.1| - 0.011 15.8 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_AsnC-type PF13404.6 gi|320100486|ref|YP_004176078.1| - 0.018 14.9 0.2 0.033 14.0 0.0 1.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF2089 PF09862.9 gi|320100486|ref|YP_004176078.1| - 0.029 14.4 0.0 0.035 14.1 0.0 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_Tnp_ISL3 PF13542.6 gi|320100486|ref|YP_004176078.1| - 0.031 13.7 0.0 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|320100486|ref|YP_004176078.1| - 0.04 13.7 0.0 0.073 12.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|320100486|ref|YP_004176078.1| - 0.043 13.8 0.0 0.053 13.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Rio2_N PF09202.11 gi|320100486|ref|YP_004176078.1| - 0.053 13.7 0.0 0.053 13.7 0.0 1.1 1 0 0 1 1 1 0 Rio2, N-terminal AbiEi_4 PF13338.6 gi|320100486|ref|YP_004176078.1| - 0.064 13.4 0.1 0.088 13.0 0.1 1.3 1 1 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_11 PF08279.12 gi|320100486|ref|YP_004176078.1| - 0.065 13.2 0.0 0.071 13.1 0.0 1.1 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.17 gi|320100486|ref|YP_004176078.1| - 0.1 12.5 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit ACT_4 PF13291.6 gi|320100487|ref|YP_004176079.1| - 0.077 13.6 0.0 0.15 12.7 0.0 1.4 1 0 0 1 1 1 0 ACT domain ACT PF01842.25 gi|320100487|ref|YP_004176079.1| - 0.17 11.7 0.4 0.39 10.5 0.4 1.7 1 1 0 1 1 1 0 ACT domain DDE_Tnp_IS240 PF13610.6 gi|320100488|ref|YP_004176080.1| - 0.13 12.5 0.1 0.24 11.7 0.1 1.3 1 0 0 1 1 1 0 DDE domain Njmu-R1 PF15053.6 gi|320100488|ref|YP_004176080.1| - 0.14 11.2 0.1 0.57 9.2 0.0 1.8 1 1 1 2 2 2 0 Mjmu-R1-like protein family DUF2341 PF10102.9 gi|320100491|ref|YP_004176083.1| - 3.7e-14 53.1 0.8 2e-13 50.7 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) DUF1270 PF06900.11 gi|320100492|ref|YP_004176084.1| - 0.022 15.2 1.1 0.048 14.0 1.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1270) Pox_LP_H2 PF03356.15 gi|320100493|ref|YP_004176085.1| - 0.15 11.9 0.1 0.23 11.4 0.1 1.2 1 0 0 1 1 1 0 Viral late protein H2 T2SSF PF00482.23 gi|320100494|ref|YP_004176086.1| - 1.5e-19 70.2 3.7 1.6e-11 44.3 0.1 4.0 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|320100495|ref|YP_004176087.1| - 3.2e-49 167.5 0.0 5.2e-49 166.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|320100495|ref|YP_004176087.1| - 0.00011 22.7 0.0 0.0003 21.3 0.0 1.8 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|320100495|ref|YP_004176087.1| - 0.0022 17.7 0.1 0.0059 16.3 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|320100495|ref|YP_004176087.1| - 0.0024 17.4 0.1 0.0044 16.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region PIF1 PF05970.14 gi|320100495|ref|YP_004176087.1| - 0.011 14.9 0.1 0.018 14.2 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_23 PF13476.6 gi|320100495|ref|YP_004176087.1| - 0.017 15.7 0.4 0.038 14.5 0.4 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|320100495|ref|YP_004176087.1| - 0.021 14.7 0.0 0.061 13.2 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|320100495|ref|YP_004176087.1| - 0.021 15.2 0.0 0.049 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|320100495|ref|YP_004176087.1| - 0.022 14.1 0.3 0.072 12.4 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|320100495|ref|YP_004176087.1| - 0.025 14.8 1.8 0.049 13.9 0.1 2.3 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|320100495|ref|YP_004176087.1| - 0.031 14.0 0.3 0.067 12.9 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|320100495|ref|YP_004176087.1| - 0.04 14.2 2.5 0.42 10.9 2.5 2.3 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|320100495|ref|YP_004176087.1| - 0.064 12.2 0.6 0.19 10.6 0.6 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|320100495|ref|YP_004176087.1| - 0.066 13.3 0.1 0.75 9.9 0.0 2.6 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain DEAD PF00270.29 gi|320100495|ref|YP_004176087.1| - 0.081 12.7 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 DEAD/DEAH box helicase DHHA1 PF02272.19 gi|320100497|ref|YP_004176089.1| - 3.2e-09 37.3 0.1 5.9e-09 36.5 0.1 1.4 1 0 0 1 1 1 1 DHHA1 domain CoA_binding_2 PF13380.6 gi|320100497|ref|YP_004176089.1| - 0.18 12.3 0.0 0.29 11.6 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain DUF429 PF04250.13 gi|320100498|ref|YP_004176090.1| - 2.4e-07 30.8 0.3 1.2e-06 28.5 0.1 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF429) FAD_binding_2 PF00890.24 gi|320100499|ref|YP_004176091.1| - 3.6e-11 42.8 1.3 1.3e-05 24.5 0.2 2.7 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|320100499|ref|YP_004176091.1| - 1.7e-09 37.6 0.2 2.8e-09 36.8 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|320100499|ref|YP_004176091.1| - 2.9e-09 36.4 0.8 3.6e-07 29.6 0.0 2.3 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|320100499|ref|YP_004176091.1| - 1.2e-07 31.3 3.2 9.7e-06 25.1 0.1 2.9 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|320100499|ref|YP_004176091.1| - 2.1e-07 30.9 5.2 0.0043 16.7 0.6 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|320100499|ref|YP_004176091.1| - 1.7e-06 28.1 0.1 0.0031 17.7 0.1 3.0 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|320100499|ref|YP_004176091.1| - 6.8e-06 25.2 0.1 0.0059 15.5 0.0 2.8 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|320100499|ref|YP_004176091.1| - 3.5e-05 23.2 1.0 0.00017 20.9 1.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|320100499|ref|YP_004176091.1| - 6.5e-05 23.4 5.1 0.28 11.8 0.1 3.3 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|320100499|ref|YP_004176091.1| - 0.00013 20.9 0.2 0.0013 17.5 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|320100499|ref|YP_004176091.1| - 0.00039 19.6 0.4 0.00063 18.9 0.4 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|320100499|ref|YP_004176091.1| - 0.0007 18.9 1.1 0.0022 17.3 1.0 1.9 2 1 0 2 2 2 1 Thi4 family PYNP_C PF07831.13 gi|320100500|ref|YP_004176092.1| - 1.9e-13 49.8 0.2 2e-12 46.5 0.0 2.6 3 0 0 3 3 3 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|320100500|ref|YP_004176092.1| - 7.3e-12 45.4 0.9 1.3e-10 41.3 0.9 2.3 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|320100500|ref|YP_004176092.1| - 1e-09 38.1 0.0 3.1e-09 36.5 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain CDC48_N PF02359.18 gi|320100500|ref|YP_004176092.1| - 4.7e-08 33.1 0.5 9.9e-08 32.1 0.5 1.5 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Molydop_binding PF01568.21 gi|320100500|ref|YP_004176092.1| - 0.00018 21.5 0.3 0.14 12.2 0.1 2.5 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain TcpF PF06340.11 gi|320100500|ref|YP_004176092.1| - 0.044 12.7 0.0 0.076 11.9 0.0 1.3 1 0 0 1 1 1 0 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F AstA PF04958.12 gi|320100500|ref|YP_004176092.1| - 0.059 11.9 0.0 0.085 11.4 0.0 1.2 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit DUF711 PF05167.12 gi|320100501|ref|YP_004176093.1| - 2.4e-22 79.4 0.0 7.7e-19 67.9 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised ACR (DUF711) OTCace PF00185.24 gi|320100502|ref|YP_004176094.1| - 1.5e-56 190.8 0.0 2.1e-56 190.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|320100502|ref|YP_004176094.1| - 5.7e-50 169.2 0.2 1.2e-49 168.1 0.1 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain STT3 PF02516.14 gi|320100503|ref|YP_004176095.1| - 9e-18 64.4 27.7 1.5e-16 60.4 27.7 2.4 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit RPW8 PF05659.11 gi|320100504|ref|YP_004176096.1| - 0.039 13.6 2.6 1.2 8.8 0.6 2.8 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Snf7 PF03357.21 gi|320100504|ref|YP_004176096.1| - 0.056 13.0 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 Snf7 DUF2203 PF09969.9 gi|320100504|ref|YP_004176096.1| - 0.22 12.2 1.3 0.4 11.4 0.6 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF432 PF04254.13 gi|320100505|ref|YP_004176097.1| - 0.029 14.5 0.0 0.062 13.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF432) ParA PF10609.9 gi|320100506|ref|YP_004176098.1| - 2e-83 279.7 0.0 2.5e-83 279.3 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|320100506|ref|YP_004176098.1| - 7.7e-14 51.8 0.0 2.1e-13 50.4 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|320100506|ref|YP_004176098.1| - 7e-07 28.7 0.7 7e-07 28.7 0.7 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|320100506|ref|YP_004176098.1| - 7.9e-07 29.2 0.3 1.3e-05 25.2 0.3 2.2 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|320100506|ref|YP_004176098.1| - 0.00019 21.0 0.3 0.0017 17.8 0.3 2.2 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|320100506|ref|YP_004176098.1| - 0.00069 19.0 0.1 0.0012 18.1 0.1 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|320100506|ref|YP_004176098.1| - 0.008 16.0 1.1 1.7 8.4 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|320100506|ref|YP_004176098.1| - 0.0097 15.5 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|320100506|ref|YP_004176098.1| - 0.034 13.4 0.0 0.049 12.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.22 gi|320100506|ref|YP_004176098.1| - 0.056 12.6 0.1 0.084 12.1 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain MeaB PF03308.16 gi|320100506|ref|YP_004176098.1| - 0.07 12.1 0.1 0.12 11.3 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 gi|320100506|ref|YP_004176098.1| - 0.11 12.2 0.2 0.57 9.9 0.1 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein TF_Zn_Ribbon PF08271.12 gi|320100506|ref|YP_004176098.1| - 0.15 11.6 0.1 0.28 10.7 0.1 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding ResIII PF04851.15 gi|320100506|ref|YP_004176098.1| - 0.16 11.9 0.1 1.3 9.0 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit VirC1 PF07015.11 gi|320100506|ref|YP_004176098.1| - 0.17 11.2 0.1 0.29 10.4 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_30 PF13604.6 gi|320100506|ref|YP_004176098.1| - 0.18 11.5 0.1 3.3 7.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 gi|320100506|ref|YP_004176098.1| - 0.21 11.0 0.2 0.55 9.7 0.2 1.6 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ GHMP_kinases_N PF00288.26 gi|320100507|ref|YP_004176099.1| - 1.4e-15 57.3 0.8 1.4e-15 57.3 0.8 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|320100507|ref|YP_004176099.1| - 1.8e-11 44.2 0.5 4.9e-11 42.8 0.5 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|320100507|ref|YP_004176099.1| - 0.093 12.3 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Galactokinase galactose-binding signature Glyco_trans_2_3 PF13632.6 gi|320100510|ref|YP_004176102.1| - 5.1e-21 75.5 0.2 8.2e-21 74.8 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|320100510|ref|YP_004176102.1| - 1.1e-13 51.6 0.0 1.4e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|320100510|ref|YP_004176102.1| - 0.0042 16.6 0.0 0.01 15.3 0.0 1.7 2 1 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|320100510|ref|YP_004176102.1| - 0.093 13.3 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Fe-ADH PF00465.19 gi|320100511|ref|YP_004176103.1| - 2.9e-83 279.7 0.3 3.7e-83 279.3 0.3 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|320100511|ref|YP_004176103.1| - 8.2e-11 42.1 4.3 3.3e-08 33.6 0.4 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|320100511|ref|YP_004176103.1| - 0.55 9.4 4.0 0.094 11.9 0.3 1.6 2 0 0 2 2 2 0 3-dehydroquinate synthase DUF763 PF05559.11 gi|320100512|ref|YP_004176104.1| - 8.3e-105 350.4 0.0 1e-104 350.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH PF00633.23 gi|320100512|ref|YP_004176104.1| - 0.069 13.1 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif Aminotran_3 PF00202.21 gi|320100513|ref|YP_004176105.1| - 3.7e-110 368.4 0.0 4.4e-110 368.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III RPAP1_N PF08621.10 gi|320100514|ref|YP_004176106.1| - 0.0021 17.8 3.8 0.044 13.6 0.2 2.2 1 1 1 2 2 2 2 RPAP1-like, N-terminal PGM_PMM_I PF02878.16 gi|320100515|ref|YP_004176107.1| - 9.4e-27 93.4 0.0 2.5e-26 92.0 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|320100515|ref|YP_004176107.1| - 1e-18 67.8 0.0 2.8e-18 66.4 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|320100515|ref|YP_004176107.1| - 5.1e-12 45.8 0.1 1.6e-11 44.2 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|320100515|ref|YP_004176107.1| - 4.2e-06 26.9 0.0 1.3e-05 25.3 0.0 1.9 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM1_C PF18105.1 gi|320100515|ref|YP_004176107.1| - 0.079 12.5 0.5 0.23 11.0 0.5 1.8 1 0 0 1 1 1 0 PGM1 C-terminal domain DUF350 PF03994.14 gi|320100516|ref|YP_004176108.1| - 0.018 15.2 0.1 0.018 15.2 0.1 3.7 3 1 0 3 3 3 0 Domain of Unknown Function (DUF350) AAA_16 PF13191.6 gi|320100517|ref|YP_004176109.1| - 0.023 15.1 0.3 0.22 11.9 0.0 2.5 2 0 0 2 2 2 0 AAA ATPase domain OTCace PF00185.24 gi|320100518|ref|YP_004176110.1| - 8.1e-38 130.0 0.0 3.8e-37 127.8 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|320100518|ref|YP_004176110.1| - 1.7e-33 115.7 0.0 2.6e-33 115.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NTPase_I-T PF01931.18 gi|320100519|ref|YP_004176111.1| - 8.7e-41 139.4 0.0 1e-40 139.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 CitMHS PF03600.16 gi|320100520|ref|YP_004176112.1| - 4.9e-23 81.8 68.0 4.5e-20 72.0 41.6 2.9 1 1 2 3 3 3 2 Citrate transporter ArsB PF02040.15 gi|320100520|ref|YP_004176112.1| - 0.00016 21.1 31.6 0.0023 17.3 31.6 2.1 1 1 0 1 1 1 1 Arsenical pump membrane protein PLDc_2 PF13091.6 gi|320100521|ref|YP_004176113.1| - 4.3e-23 81.7 0.0 5.8e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.22 gi|320100521|ref|YP_004176113.1| - 0.00026 21.0 0.5 0.0017 18.4 0.0 2.2 2 0 0 2 2 2 1 Phospholipase D Active site motif Pox_L5 PF04872.13 gi|320100521|ref|YP_004176113.1| - 0.067 13.1 0.0 0.3 11.0 0.0 1.9 2 0 0 2 2 2 0 Poxvirus L5 protein family Tail_VII PF17091.5 gi|320100521|ref|YP_004176113.1| - 0.41 10.6 2.0 0.86 9.5 2.0 1.5 1 0 0 1 1 1 0 Inovirus G7P protein NTP_transferase PF00483.23 gi|320100522|ref|YP_004176114.1| - 3.4e-38 131.6 0.0 1.5e-37 129.5 0.0 1.8 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|320100522|ref|YP_004176114.1| - 4.4e-10 40.1 0.0 6.6e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|320100522|ref|YP_004176114.1| - 1.8e-07 30.6 5.0 7.1e-05 22.4 0.3 4.0 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|320100522|ref|YP_004176114.1| - 0.021 14.6 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|320100522|ref|YP_004176114.1| - 0.056 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase DUF4954 PF16314.5 gi|320100522|ref|YP_004176114.1| - 0.21 9.7 0.3 0.33 9.0 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Hexapep_2 PF14602.6 gi|320100522|ref|YP_004176114.1| - 2.1 8.2 5.3 3.2 7.6 0.3 3.0 1 1 2 3 3 3 0 Hexapeptide repeat of succinyl-transferase PGM_PMM_I PF02878.16 gi|320100523|ref|YP_004176115.1| - 4.4e-10 39.4 0.0 1.4e-09 37.7 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|320100523|ref|YP_004176115.1| - 0.00018 22.0 0.0 0.0005 20.6 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PALP PF00291.25 gi|320100524|ref|YP_004176116.1| - 1.5e-42 146.0 0.0 1.8e-42 145.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TFX_C PF14601.6 gi|320100525|ref|YP_004176117.1| - 3.3e-13 49.4 0.0 4.8e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|320100525|ref|YP_004176117.1| - 2.2e-09 36.7 1.2 4e-09 35.9 1.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|320100525|ref|YP_004176117.1| - 3.5e-08 32.9 0.1 7.8e-08 31.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_3 PF01381.22 gi|320100525|ref|YP_004176117.1| - 5.2e-06 26.4 0.2 1.1e-05 25.4 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|320100525|ref|YP_004176117.1| - 3.7e-05 23.4 0.4 3.7e-05 23.4 0.4 1.9 2 1 0 2 2 2 1 Homeodomain-like domain HTH_31 PF13560.6 gi|320100525|ref|YP_004176117.1| - 0.00014 22.1 1.2 0.00026 21.3 1.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|320100525|ref|YP_004176117.1| - 0.00037 20.1 0.7 0.0009 18.9 0.2 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|320100525|ref|YP_004176117.1| - 0.0013 18.4 0.1 0.0043 16.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|320100525|ref|YP_004176117.1| - 0.0014 18.5 0.0 0.0029 17.5 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|320100525|ref|YP_004176117.1| - 0.0036 17.1 0.1 0.0067 16.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|320100525|ref|YP_004176117.1| - 0.008 16.2 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|320100525|ref|YP_004176117.1| - 0.025 14.4 0.4 0.79 9.6 0.1 2.9 3 0 0 3 3 3 0 HTH DNA binding domain HTH_Crp_2 PF13545.6 gi|320100525|ref|YP_004176117.1| - 0.036 14.0 0.1 0.13 12.2 0.1 1.9 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|320100525|ref|YP_004176117.1| - 0.042 14.0 0.2 0.12 12.5 0.2 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Fer4_7 PF12838.7 gi|320100526|ref|YP_004176118.1| - 1.2e-11 45.0 32.0 2.1e-07 31.4 11.6 1.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|320100526|ref|YP_004176118.1| - 1.9e-10 40.1 15.1 2.7e-05 23.8 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|320100526|ref|YP_004176118.1| - 5.6e-09 35.7 14.5 0.00025 21.0 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|320100526|ref|YP_004176118.1| - 8.6e-09 35.4 19.4 8.3e-07 29.1 9.8 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|320100526|ref|YP_004176118.1| - 2.3e-08 34.0 6.2 0.00092 19.3 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|320100526|ref|YP_004176118.1| - 3.2e-08 33.5 9.3 4.9e-08 33.0 9.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|320100526|ref|YP_004176118.1| - 3.3e-08 33.1 13.5 0.00032 20.6 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|320100526|ref|YP_004176118.1| - 9e-08 32.5 4.7 0.0045 17.4 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|320100526|ref|YP_004176118.1| - 3.6e-07 30.2 12.1 0.0022 18.4 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|320100526|ref|YP_004176118.1| - 1.5e-05 25.4 12.0 0.00065 20.2 12.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|320100526|ref|YP_004176118.1| - 1.9e-05 25.5 11.6 0.048 14.6 13.1 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|320100526|ref|YP_004176118.1| - 0.0049 17.4 11.3 0.081 13.5 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|320100526|ref|YP_004176118.1| - 0.015 16.2 15.1 0.2 12.7 2.6 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|320100526|ref|YP_004176118.1| - 0.08 13.7 7.2 2.4 8.9 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|320100526|ref|YP_004176118.1| - 0.4 10.9 10.9 18 5.5 10.9 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|320100526|ref|YP_004176118.1| - 1.2 10.1 12.6 2.2 9.2 1.3 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|320100527|ref|YP_004176119.1| - 5.4e-65 219.4 0.2 6.9e-65 219.0 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|320100527|ref|YP_004176119.1| - 4.9e-15 55.7 0.1 1e-14 54.7 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|320100527|ref|YP_004176119.1| - 9.3e-10 38.5 0.0 2.7e-09 37.0 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|320100527|ref|YP_004176119.1| - 0.00021 21.0 0.3 0.00037 20.1 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Asparaginase_II PF06089.12 gi|320100527|ref|YP_004176119.1| - 0.13 11.2 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 L-asparaginase II TPP_enzyme_C PF02775.21 gi|320100528|ref|YP_004176120.1| - 3.1e-29 101.7 0.5 1.1e-28 99.9 0.1 1.8 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.18 gi|320100529|ref|YP_004176121.1| - 4e-25 88.9 0.0 4.8e-25 88.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF2754 PF10953.8 gi|320100530|ref|YP_004176122.1| - 7.9 6.8 6.4 29 5.0 0.4 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2754) SNF PF00209.18 gi|320100532|ref|YP_004176124.1| - 8.3e-49 166.6 39.7 2.9e-26 92.2 21.1 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family FixQ PF05545.11 gi|320100532|ref|YP_004176124.1| - 0.13 12.2 0.1 0.13 12.2 0.1 4.3 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ SDF PF00375.18 gi|320100533|ref|YP_004176125.1| - 8.8e-100 334.4 33.9 9.9e-100 334.3 33.9 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family DUF3525 PF12039.8 gi|320100533|ref|YP_004176125.1| - 0.16 10.7 0.2 0.23 10.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3525) UPF0113 PF03657.13 gi|320100534|ref|YP_004176126.1| - 3.3e-18 65.7 0.2 4.7e-18 65.2 0.2 1.2 1 0 0 1 1 1 1 UPF0113 PUA domain Methyltr_RsmB-F PF01189.17 gi|320100535|ref|YP_004176127.1| - 1.3e-39 135.9 0.0 1.7e-39 135.6 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|320100535|ref|YP_004176127.1| - 4.8e-11 43.0 0.0 7.4e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF DUF72 PF01904.18 gi|320100536|ref|YP_004176128.1| - 7.8e-42 143.8 0.1 9.5e-42 143.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 PHO4 PF01384.20 gi|320100537|ref|YP_004176129.1| - 1.6e-63 214.8 24.9 1.9e-63 214.5 24.9 1.0 1 0 0 1 1 1 1 Phosphate transporter family POR PF01558.18 gi|320100538|ref|YP_004176130.1| - 6.4e-37 127.3 0.1 7.5e-37 127.1 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|320100539|ref|YP_004176131.1| - 3e-13 49.0 13.6 1.4e-07 31.0 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|320100539|ref|YP_004176131.1| - 2e-09 37.4 9.5 2.5e-09 37.1 9.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|320100539|ref|YP_004176131.1| - 2.6e-08 33.6 12.5 0.00012 22.0 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|320100539|ref|YP_004176131.1| - 1.4e-07 31.5 9.6 2.1e-07 31.0 9.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|320100539|ref|YP_004176131.1| - 1.5e-07 32.3 7.7 0.0004 21.3 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|320100539|ref|YP_004176131.1| - 1.2e-06 29.0 10.0 4.5e-06 27.2 10.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|320100539|ref|YP_004176131.1| - 2.2e-06 27.4 10.4 0.00019 21.3 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|320100539|ref|YP_004176131.1| - 3.1e-06 27.2 21.4 0.00017 21.6 11.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|320100539|ref|YP_004176131.1| - 0.00013 22.5 11.4 0.003 18.1 1.6 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|320100539|ref|YP_004176131.1| - 0.0025 18.2 10.9 3.3 8.2 1.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|320100539|ref|YP_004176131.1| - 0.016 16.0 13.1 1.3 9.8 1.5 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|320100539|ref|YP_004176131.1| - 0.018 15.5 10.6 0.76 10.4 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|320100539|ref|YP_004176131.1| - 0.078 13.5 11.6 0.25 11.9 2.5 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|320100539|ref|YP_004176131.1| - 0.24 11.6 6.7 0.55 10.5 6.7 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|320100539|ref|YP_004176131.1| - 3.3 8.6 12.5 0.35 11.7 2.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|320100540|ref|YP_004176132.1| - 2.4e-76 256.5 0.8 3.3e-76 256.1 0.8 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|320100540|ref|YP_004176132.1| - 1.4e-29 102.3 0.1 2.8e-29 101.4 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|320100540|ref|YP_004176132.1| - 5.8e-05 23.0 0.0 0.00013 21.8 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|320100541|ref|YP_004176133.1| - 1.1e-23 83.8 0.3 1.5e-23 83.3 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HycI PF01750.18 gi|320100542|ref|YP_004176134.1| - 2.2e-14 53.4 0.0 3e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease DUF4905 PF16248.5 gi|320100543|ref|YP_004176135.1| - 0.042 13.7 0.0 2.8 7.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4905) Peptidase_M42 PF05343.14 gi|320100544|ref|YP_004176136.1| - 1.2e-105 352.7 0.2 1.4e-105 352.5 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|320100544|ref|YP_004176136.1| - 4.6e-11 42.8 0.0 7.9e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|320100544|ref|YP_004176136.1| - 5.3e-07 29.5 0.0 0.00012 21.8 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M18 PF02127.15 gi|320100544|ref|YP_004176136.1| - 0.003 16.4 0.0 0.0065 15.3 0.0 1.4 1 1 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) Tudor_2 PF18104.1 gi|320100544|ref|YP_004176136.1| - 0.024 14.3 0.2 0.054 13.2 0.2 1.6 1 0 0 1 1 1 0 Jumonji domain-containing protein 2A Tudor domain Alpha-amylase PF00128.24 gi|320100545|ref|YP_004176137.1| - 1.4e-60 205.7 0.0 2.2e-60 205.0 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 gi|320100545|ref|YP_004176137.1| - 3.2e-07 30.5 0.0 6.4e-06 26.3 0.0 2.7 2 0 0 2 2 2 1 Glycogen recognition site of AMP-activated protein kinase Bac_A_amyl_C PF18612.1 gi|320100545|ref|YP_004176137.1| - 0.0002 21.1 0.2 0.00037 20.2 0.2 1.4 1 0 0 1 1 1 1 Bacterial Alpha amylase C-terminal domain Malt_amylase_C PF16657.5 gi|320100545|ref|YP_004176137.1| - 0.0061 16.6 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain CBM_48 PF02922.18 gi|320100545|ref|YP_004176137.1| - 0.075 13.4 0.0 8.4 6.8 0.0 2.7 2 0 0 2 2 2 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AAA_3 PF07726.11 gi|320100546|ref|YP_004176138.1| - 8.2e-64 213.3 0.1 1.5e-63 212.5 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|320100546|ref|YP_004176138.1| - 7.9e-21 73.7 0.0 1.8e-20 72.5 0.0 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|320100546|ref|YP_004176138.1| - 1.7e-16 60.5 0.0 4.3e-16 59.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|320100546|ref|YP_004176138.1| - 1.1e-06 28.5 0.0 2.5e-06 27.3 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|320100546|ref|YP_004176138.1| - 2e-06 28.3 0.0 5.6e-06 26.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|320100546|ref|YP_004176138.1| - 2.4e-05 23.8 0.2 0.11 11.9 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|320100546|ref|YP_004176138.1| - 0.00012 21.3 0.0 0.00021 20.4 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|320100546|ref|YP_004176138.1| - 0.00038 20.2 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 gi|320100546|ref|YP_004176138.1| - 0.096 12.4 0.1 0.55 9.9 0.0 2.1 3 0 0 3 3 3 0 AAA domain MCM_lid PF17855.1 gi|320100546|ref|YP_004176138.1| - 0.11 12.9 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 MCM AAA-lid domain AAA_2 PF07724.14 gi|320100546|ref|YP_004176138.1| - 0.15 12.2 0.0 0.29 11.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Njmu-R1 PF15053.6 gi|320100546|ref|YP_004176138.1| - 0.18 10.9 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 Mjmu-R1-like protein family DUF4129 PF13559.6 gi|320100547|ref|YP_004176139.1| - 3.9e-08 33.4 0.9 1.7e-07 31.4 0.7 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4129) NICE-3 PF07406.11 gi|320100547|ref|YP_004176139.1| - 0.027 14.4 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 NICE-3 protein Osw5 PF17062.5 gi|320100548|ref|YP_004176140.1| - 0.02 15.0 0.4 0.02 15.0 0.4 3.7 4 0 0 4 4 4 0 Outer spore wall 5 Papilloma_E5A PF05776.12 gi|320100549|ref|YP_004176141.1| - 0.16 12.3 4.3 0.2 12.0 4.3 1.1 1 0 0 1 1 1 0 Papillomavirus E5A protein DUF423 PF04241.15 gi|320100549|ref|YP_004176141.1| - 5.5 7.3 8.5 10 6.4 4.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF423) Mor PF08765.11 gi|320100550|ref|YP_004176142.1| - 0.0047 16.9 0.1 0.092 12.7 0.0 2.2 2 0 0 2 2 2 1 Mor transcription activator family DUF58 PF01882.18 gi|320100551|ref|YP_004176143.1| - 7.4e-18 64.6 0.1 1.4e-17 63.7 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_CoxE PF05762.14 gi|320100551|ref|YP_004176143.1| - 0.01 15.2 0.2 0.016 14.6 0.2 1.4 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein Rubrerythrin PF02915.17 gi|320100552|ref|YP_004176144.1| - 3.2e-10 40.6 0.2 3.7e-10 40.3 0.2 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|320100552|ref|YP_004176144.1| - 0.00042 20.6 0.1 0.00049 20.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|320100552|ref|YP_004176144.1| - 0.0025 17.8 0.0 0.0029 17.6 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.13 gi|320100552|ref|YP_004176144.1| - 0.01 15.6 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 Sigma70_r3 PF04539.16 gi|320100552|ref|YP_004176144.1| - 0.022 14.9 0.6 0.51 10.5 0.6 2.3 1 1 0 1 1 1 0 Sigma-70 region 3 DUF892 PF05974.12 gi|320100552|ref|YP_004176144.1| - 0.03 14.3 0.2 0.035 14.1 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF892) DUF3231 PF11553.8 gi|320100552|ref|YP_004176144.1| - 0.031 13.9 0.0 0.04 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) DUF2202 PF09968.9 gi|320100552|ref|YP_004176144.1| - 0.041 13.7 0.0 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) NepR PF18557.1 gi|320100552|ref|YP_004176144.1| - 0.22 11.2 3.3 10 5.9 0.0 3.0 3 0 0 3 3 3 0 Anti-sigma factor NepR Rubrerythrin PF02915.17 gi|320100553|ref|YP_004176145.1| - 4.8e-07 30.2 4.1 3.3e-06 27.5 4.1 1.9 1 1 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|320100553|ref|YP_004176145.1| - 0.013 15.3 5.1 0.47 10.2 3.6 2.7 1 1 2 3 3 3 0 Ubiquinone biosynthesis protein COQ7 FA_desaturase_2 PF03405.14 gi|320100553|ref|YP_004176145.1| - 0.014 14.2 0.3 1.5 7.6 0.0 2.1 1 1 0 2 2 2 0 Fatty acid desaturase FCH PF00611.23 gi|320100553|ref|YP_004176145.1| - 0.033 14.5 0.6 0.18 12.1 0.6 2.2 1 1 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain Ferritin_2 PF13668.6 gi|320100553|ref|YP_004176145.1| - 0.05 13.8 0.2 0.1 12.8 0.2 1.5 1 1 0 1 1 1 0 Ferritin-like domain Syntaxin-6_N PF09177.11 gi|320100553|ref|YP_004176145.1| - 0.069 13.7 0.6 0.1 13.1 0.6 1.3 1 0 0 1 1 1 0 Syntaxin 6, N-terminal Coat_F PF07875.12 gi|320100553|ref|YP_004176145.1| - 0.081 13.2 0.0 6.7 7.0 0.0 2.3 2 0 0 2 2 2 0 Coat F domain DUF1043 PF06295.12 gi|320100553|ref|YP_004176145.1| - 0.12 12.4 0.2 0.22 11.5 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) Lactamase_B PF00753.27 gi|320100554|ref|YP_004176146.1| - 6.6e-08 32.8 1.1 1.3e-07 31.9 1.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily FMN_red PF03358.15 gi|320100554|ref|YP_004176146.1| - 0.00078 19.2 0.0 0.048 13.4 0.0 2.2 2 0 0 2 2 2 2 NADPH-dependent FMN reductase Peripla_BP_6 PF13458.6 gi|320100554|ref|YP_004176146.1| - 0.004 16.9 0.4 0.12 12.0 0.2 2.0 1 1 1 2 2 2 2 Periplasmic binding protein AhpC-TSA PF00578.21 gi|320100555|ref|YP_004176147.1| - 1.4e-32 112.2 0.0 1.9e-32 111.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|320100555|ref|YP_004176147.1| - 1.6e-16 60.3 0.0 2.2e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|320100555|ref|YP_004176147.1| - 6e-11 42.0 0.0 1.3e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|320100555|ref|YP_004176147.1| - 0.023 14.8 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Sel1 PF08238.12 gi|320100555|ref|YP_004176147.1| - 0.03 15.0 0.1 0.071 13.8 0.1 1.7 1 0 0 1 1 1 0 Sel1 repeat DUF4368 PF14287.6 gi|320100555|ref|YP_004176147.1| - 0.19 12.0 0.0 0.4 11.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4368) zinc_ribbon_9 PF14369.6 gi|320100556|ref|YP_004176148.1| - 0.00037 20.7 0.2 0.039 14.2 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon zf-ribbon_3 PF13248.6 gi|320100556|ref|YP_004176148.1| - 0.00062 19.1 0.9 0.21 11.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Mu-like_Com PF10122.9 gi|320100556|ref|YP_004176148.1| - 0.0012 18.2 1.5 0.6 9.6 0.4 2.3 2 0 0 2 2 2 2 Mu-like prophage protein Com zinc_ribbon_2 PF13240.6 gi|320100556|ref|YP_004176148.1| - 0.002 17.8 1.5 1.1 9.1 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.6 gi|320100556|ref|YP_004176148.1| - 0.0033 17.4 0.5 1.8 8.6 0.0 2.1 1 1 1 2 2 2 2 CpXC protein zinc_ribbon_4 PF13717.6 gi|320100556|ref|YP_004176148.1| - 0.0068 16.3 0.4 3 7.8 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|320100556|ref|YP_004176148.1| - 0.0088 16.0 0.4 3.9 7.5 0.0 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|320100556|ref|YP_004176148.1| - 0.01 15.4 0.8 1.9 8.1 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|320100556|ref|YP_004176148.1| - 0.016 15.3 0.7 3.2 7.9 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-Mss51 PF13824.6 gi|320100556|ref|YP_004176148.1| - 0.02 15.0 0.9 3.9 7.6 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-TFIIB PF13453.6 gi|320100556|ref|YP_004176148.1| - 0.026 13.9 0.3 2 7.8 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.12 gi|320100556|ref|YP_004176148.1| - 0.051 13.1 0.9 5.3 6.6 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|320100556|ref|YP_004176148.1| - 0.054 13.6 1.7 9.2 6.4 0.2 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-FPG_IleRS PF06827.14 gi|320100556|ref|YP_004176148.1| - 0.058 13.3 4.2 1.5 8.7 0.2 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-CCHC_5 PF14787.6 gi|320100556|ref|YP_004176148.1| - 0.058 13.1 2.6 2.3 8.0 0.0 2.2 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger UPF0547 PF10571.9 gi|320100556|ref|YP_004176148.1| - 0.08 13.0 3.5 2.5 8.3 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.19 gi|320100556|ref|YP_004176148.1| - 0.11 12.5 0.4 1.9 8.5 0.0 1.9 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|320100556|ref|YP_004176148.1| - 0.36 11.2 2.1 1.1 9.6 2.1 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|320100556|ref|YP_004176148.1| - 0.69 9.9 2.3 14 5.6 0.2 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain HD PF01966.22 gi|320100557|ref|YP_004176149.1| - 3.3e-07 30.5 0.2 9.6e-07 29.1 0.2 1.8 1 1 0 1 1 1 1 HD domain DUF3194 PF11419.8 gi|320100557|ref|YP_004176149.1| - 0.16 12.3 1.2 1.3 9.5 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3194) Glycos_transf_2 PF00535.26 gi|320100558|ref|YP_004176150.1| - 1.3e-31 109.7 0.0 1.6e-31 109.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|320100558|ref|YP_004176150.1| - 3.5e-15 56.5 0.1 4e-15 56.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|320100558|ref|YP_004176150.1| - 0.0028 17.2 0.0 0.0036 16.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7N PF13733.6 gi|320100558|ref|YP_004176150.1| - 0.012 15.2 0.0 0.025 14.2 0.0 1.5 2 0 0 2 2 2 0 N-terminal region of glycosyl transferase group 7 Glyco_transf_21 PF13506.6 gi|320100558|ref|YP_004176150.1| - 0.025 14.1 0.0 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|320100558|ref|YP_004176150.1| - 0.068 13.7 0.0 0.2 12.2 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase family 2 CHAD PF05235.14 gi|320100558|ref|YP_004176150.1| - 0.2 11.6 0.1 0.3 11.0 0.1 1.2 1 0 0 1 1 1 0 CHAD domain tRNA-synt_1 PF00133.22 gi|320100559|ref|YP_004176151.1| - 1.1e-172 575.4 0.0 1.4e-172 575.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|320100559|ref|YP_004176151.1| - 7.6e-37 126.6 0.0 1.6e-36 125.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|320100559|ref|YP_004176151.1| - 5.4e-18 64.9 0.0 3.1e-06 26.2 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|320100559|ref|YP_004176151.1| - 0.00012 21.7 0.0 0.00045 19.8 0.0 2.0 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|320100559|ref|YP_004176151.1| - 0.086 12.2 0.0 0.43 9.9 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain UPF0547 PF10571.9 gi|320100559|ref|YP_004176151.1| - 0.58 10.3 2.2 27 5.0 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 dCMP_cyt_deam_1 PF00383.23 gi|320100560|ref|YP_004176152.1| - 4.1e-15 55.5 0.1 5.2e-15 55.2 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|320100560|ref|YP_004176152.1| - 4.4e-11 43.1 0.3 6.5e-11 42.6 0.3 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|320100560|ref|YP_004176152.1| - 2.6e-05 23.9 1.0 0.011 15.3 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases AAA_23 PF13476.6 gi|320100561|ref|YP_004176153.1| - 2.1e-19 70.8 13.9 2.1e-19 70.8 13.9 4.5 2 2 0 3 3 2 1 AAA domain SMC_N PF02463.19 gi|320100561|ref|YP_004176153.1| - 1.8e-10 40.6 0.0 4.2e-10 39.5 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|320100561|ref|YP_004176153.1| - 4.5e-09 36.5 11.5 5.2e-07 29.8 0.8 3.4 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|320100561|ref|YP_004176153.1| - 7e-08 32.6 5.8 0.16 11.7 0.0 3.6 1 1 0 2 2 2 2 AAA ATPase domain AAA_27 PF13514.6 gi|320100561|ref|YP_004176153.1| - 9.6e-06 25.3 0.0 9.6e-06 25.3 0.0 4.2 4 1 1 5 5 5 1 AAA domain DUF1664 PF07889.12 gi|320100561|ref|YP_004176153.1| - 1.5e-05 25.0 23.0 0.13 12.3 0.0 5.2 2 2 3 5 5 5 3 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|320100561|ref|YP_004176153.1| - 0.00013 20.8 38.2 0.039 12.6 13.3 4.9 3 1 1 5 5 5 3 AAA domain Rad50_zn_hook PF04423.14 gi|320100561|ref|YP_004176153.1| - 0.00066 19.5 0.9 0.00066 19.5 0.9 4.0 3 0 0 3 3 1 1 Rad50 zinc hook motif PspA_IM30 PF04012.12 gi|320100561|ref|YP_004176153.1| - 0.00082 19.0 5.4 0.00082 19.0 5.4 3.8 2 2 1 3 3 3 1 PspA/IM30 family AAA_29 PF13555.6 gi|320100561|ref|YP_004176153.1| - 0.0009 18.9 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|320100561|ref|YP_004176153.1| - 0.006 16.2 4.3 0.045 13.3 0.0 4.0 3 1 0 3 3 3 1 AAA domain Laminin_II PF06009.12 gi|320100561|ref|YP_004176153.1| - 0.0074 16.3 29.8 0.049 13.6 1.2 4.7 2 2 2 4 4 4 2 Laminin Domain II Gp-FAR-1 PF05823.12 gi|320100561|ref|YP_004176153.1| - 0.0083 16.5 2.8 0.0083 16.5 2.8 3.0 3 0 0 3 3 3 1 Nematode fatty acid retinoid binding protein (Gp-FAR-1) ABC_tran PF00005.27 gi|320100561|ref|YP_004176153.1| - 0.018 15.5 7.5 2.5 8.6 0.1 4.2 3 1 0 3 3 2 0 ABC transporter AAA_22 PF13401.6 gi|320100561|ref|YP_004176153.1| - 0.033 14.4 5.2 0.6 10.4 0.0 3.9 4 0 0 4 4 3 0 AAA domain Spc7 PF08317.11 gi|320100561|ref|YP_004176153.1| - 0.039 12.9 56.5 0.23 10.3 7.7 4.6 3 1 2 5 5 5 0 Spc7 kinetochore protein ResIII PF04851.15 gi|320100561|ref|YP_004176153.1| - 0.042 13.9 0.3 0.22 11.5 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF3450 PF11932.8 gi|320100561|ref|YP_004176153.1| - 0.083 12.2 41.7 0.087 12.1 2.8 4.8 4 2 1 5 5 4 0 Protein of unknown function (DUF3450) FtsK_SpoIIIE PF01580.18 gi|320100561|ref|YP_004176153.1| - 0.16 11.3 0.1 0.16 11.3 0.1 3.2 4 0 0 4 4 3 0 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|320100561|ref|YP_004176153.1| - 0.17 12.2 0.0 0.17 12.2 0.0 4.1 2 1 0 2 2 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|320100561|ref|YP_004176153.1| - 0.18 12.2 0.0 0.77 10.1 0.0 2.1 1 0 0 1 1 1 0 AAA domain DUF948 PF06103.11 gi|320100561|ref|YP_004176153.1| - 0.19 12.0 4.9 12 6.3 0.0 5.1 2 2 0 4 4 4 0 Bacterial protein of unknown function (DUF948) Gp58 PF07902.11 gi|320100561|ref|YP_004176153.1| - 0.2 9.9 5.8 1.5 7.1 0.0 2.6 2 1 0 3 3 3 0 gp58-like protein DUF2075 PF09848.9 gi|320100561|ref|YP_004176153.1| - 0.25 10.6 0.0 0.25 10.6 0.0 2.5 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) FlxA PF14282.6 gi|320100561|ref|YP_004176153.1| - 0.29 11.2 10.0 1.7 8.7 0.0 4.4 3 1 0 4 4 4 0 FlxA-like protein UPF0242 PF06785.11 gi|320100561|ref|YP_004176153.1| - 0.31 11.1 48.0 0.2 11.7 10.2 4.1 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0242) N-terminus DUF4407 PF14362.6 gi|320100561|ref|YP_004176153.1| - 0.47 9.8 34.6 0.094 12.0 8.4 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4407) DUF842 PF05811.13 gi|320100561|ref|YP_004176153.1| - 0.48 10.1 4.2 9.6 5.9 0.1 3.2 4 0 0 4 4 2 0 Eukaryotic protein of unknown function (DUF842) MscS_porin PF12795.7 gi|320100561|ref|YP_004176153.1| - 0.48 9.9 35.4 0.87 9.1 8.2 3.8 3 1 0 3 3 3 0 Mechanosensitive ion channel porin domain APG6_N PF17675.1 gi|320100561|ref|YP_004176153.1| - 0.8 10.2 67.4 0.63 10.6 9.1 4.8 3 1 1 4 4 4 0 Apg6 coiled-coil region ATG16 PF08614.11 gi|320100561|ref|YP_004176153.1| - 1.2 9.4 56.7 0.39 10.9 10.2 4.6 3 1 1 4 4 4 0 Autophagy protein 16 (ATG16) MAD PF05557.13 gi|320100561|ref|YP_004176153.1| - 1.3 7.3 50.5 0.51 8.6 19.8 2.5 1 1 1 2 2 2 0 Mitotic checkpoint protein Fmp27_WPPW PF10359.9 gi|320100561|ref|YP_004176153.1| - 2.2 7.0 32.9 0.93 8.3 0.2 4.2 1 1 2 4 4 4 0 RNA pol II promoter Fmp27 protein domain Effector_1 PF04518.12 gi|320100561|ref|YP_004176153.1| - 3.6 6.6 8.8 2 7.4 0.0 3.2 3 0 0 3 3 3 0 Effector from type III secretion system Cas_DxTHG PF09455.10 gi|320100561|ref|YP_004176153.1| - 3.8 7.0 24.2 7 6.1 10.7 2.6 1 1 1 2 2 2 0 CRISPR-associated (Cas) DxTHG family GAS PF13851.6 gi|320100561|ref|YP_004176153.1| - 4.2 6.7 57.6 0.76 9.1 5.7 5.0 3 2 2 5 5 5 0 Growth-arrest specific micro-tubule binding Sec34 PF04136.15 gi|320100561|ref|YP_004176153.1| - 4.9 7.0 15.6 3.3 7.6 0.0 4.5 3 2 2 5 5 5 0 Sec34-like family DUF3818 PF12825.7 gi|320100561|ref|YP_004176153.1| - 6 5.8 8.1 0.25 10.3 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function in PX-proteins (DUF3818) Prominin PF05478.11 gi|320100561|ref|YP_004176153.1| - 6.6 4.6 15.0 0.75 7.7 1.8 3.0 2 1 1 3 3 3 0 Prominin AAA_11 PF13086.6 gi|320100561|ref|YP_004176153.1| - 7.6 6.2 27.9 0.055 13.3 3.5 3.9 1 1 1 2 2 1 0 AAA domain TMPIT PF07851.13 gi|320100561|ref|YP_004176153.1| - 8.6 5.5 27.2 0.77 8.9 1.4 4.3 3 1 1 4 4 4 0 TMPIT-like protein Fib_alpha PF08702.10 gi|320100561|ref|YP_004176153.1| - 9.5 6.4 24.8 4.9 7.3 1.4 4.9 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family DUF87 PF01935.17 gi|320100562|ref|YP_004176154.1| - 1.4e-12 48.2 0.1 1.1e-09 38.7 0.0 2.3 2 0 0 2 2 2 2 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|320100562|ref|YP_004176154.1| - 7.9e-05 22.1 1.4 0.0054 16.1 0.1 2.8 3 0 0 3 3 3 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|320100562|ref|YP_004176154.1| - 0.00025 20.1 0.0 0.00046 19.2 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|320100562|ref|YP_004176154.1| - 0.0018 17.3 0.2 0.68 8.8 0.1 2.5 2 1 0 2 2 2 2 AAA-like domain NACHT PF05729.12 gi|320100562|ref|YP_004176154.1| - 0.047 13.6 0.5 0.15 11.9 0.1 2.0 2 0 0 2 2 2 0 NACHT domain PduV-EutP PF10662.9 gi|320100562|ref|YP_004176154.1| - 0.048 13.4 0.0 0.093 12.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_7 PF12775.7 gi|320100562|ref|YP_004176154.1| - 0.1 12.1 0.2 0.18 11.3 0.2 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ResIII PF04851.15 gi|320100562|ref|YP_004176154.1| - 0.11 12.5 0.0 0.3 11.1 0.0 1.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|320100562|ref|YP_004176154.1| - 0.14 12.6 0.1 0.34 11.3 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|320100562|ref|YP_004176154.1| - 0.18 12.3 0.0 0.56 10.7 0.0 1.8 2 0 0 2 2 2 0 ABC transporter Metallophos PF00149.28 gi|320100564|ref|YP_004176156.1| - 8.7e-10 39.4 0.0 1.7e-09 38.5 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|320100564|ref|YP_004176156.1| - 0.00039 20.6 0.1 0.005 17.1 0.1 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain MerR-DNA-bind PF09278.11 gi|320100564|ref|YP_004176156.1| - 0.034 14.7 0.2 4.6 7.8 0.1 2.7 1 1 1 2 2 2 0 MerR, DNA binding Acetyltransf_7 PF13508.7 gi|320100564|ref|YP_004176156.1| - 0.094 13.2 0.0 0.26 11.7 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PALP PF00291.25 gi|320100565|ref|YP_004176157.1| - 9.8e-72 241.8 0.0 1.1e-71 241.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PfkB PF00294.24 gi|320100566|ref|YP_004176158.1| - 1.6e-54 185.3 0.2 1.9e-54 185.0 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|320100566|ref|YP_004176158.1| - 3.9e-05 23.1 0.0 6.6e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DeoC PF01791.9 gi|320100567|ref|YP_004176159.1| - 4.9e-35 121.3 0.0 5.8e-35 121.0 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Sm_multidrug_ex PF06695.11 gi|320100568|ref|YP_004176160.1| - 4.4e-26 91.9 2.5 6.2e-26 91.4 2.5 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein DUF1440 PF07274.12 gi|320100568|ref|YP_004176160.1| - 0.34 11.3 2.8 0.16 12.3 0.4 1.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1440) EI24 PF07264.11 gi|320100568|ref|YP_004176160.1| - 0.37 11.0 10.8 0.59 10.3 10.8 1.5 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Bmp PF02608.14 gi|320100569|ref|YP_004176161.1| - 9.1e-35 120.1 0.5 2.1e-34 118.9 0.4 1.5 2 0 0 2 2 2 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_6 PF13458.6 gi|320100569|ref|YP_004176161.1| - 0.0044 16.7 1.4 0.0068 16.1 0.4 1.8 1 1 1 2 2 2 1 Periplasmic binding protein RAI16-like PF10257.9 gi|320100569|ref|YP_004176161.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Retinoic acid induced 16-like protein ABC_tran PF00005.27 gi|320100570|ref|YP_004176162.1| - 1.5e-30 106.5 0.1 1.3e-29 103.4 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|320100570|ref|YP_004176162.1| - 0.00027 20.9 0.0 0.00045 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|320100570|ref|YP_004176162.1| - 0.0021 17.7 0.0 0.0045 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|320100570|ref|YP_004176162.1| - 0.0036 17.7 0.0 0.0057 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|320100570|ref|YP_004176162.1| - 0.0069 16.9 0.0 0.015 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain MukB PF04310.12 gi|320100570|ref|YP_004176162.1| - 0.019 14.8 0.0 0.42 10.4 0.0 2.1 2 0 0 2 2 2 0 MukB N-terminal AAA_15 PF13175.6 gi|320100570|ref|YP_004176162.1| - 0.039 13.7 0.0 0.06 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|320100570|ref|YP_004176162.1| - 0.046 13.6 0.0 0.088 12.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase G-alpha PF00503.20 gi|320100570|ref|YP_004176162.1| - 0.081 12.1 0.0 0.085 12.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.6 gi|320100570|ref|YP_004176162.1| - 0.1 12.3 0.2 3.4 7.3 0.1 2.8 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|320100570|ref|YP_004176162.1| - 0.11 11.4 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain SMC_N PF02463.19 gi|320100570|ref|YP_004176162.1| - 0.13 11.7 0.0 1.3 8.4 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain BPD_transp_2 PF02653.16 gi|320100572|ref|YP_004176164.1| - 2.4e-20 72.8 36.6 2.8e-20 72.6 28.7 2.3 2 1 0 2 2 2 2 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|320100573|ref|YP_004176165.1| - 1.3e-19 70.4 29.5 1.7e-19 70.0 29.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component tRNA-synt_1f PF01921.18 gi|320100574|ref|YP_004176166.1| - 1.8e-90 303.4 0.0 2.3e-90 303.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) TF_Zn_Ribbon PF08271.12 gi|320100574|ref|YP_004176166.1| - 0.03 13.8 3.0 0.082 12.4 3.0 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|320100574|ref|YP_004176166.1| - 0.24 11.4 0.8 0.51 10.3 0.8 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-FPG_IleRS PF06827.14 gi|320100574|ref|YP_004176166.1| - 0.5 10.3 3.3 1.4 8.8 3.3 1.7 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Carb_kinase PF01256.17 gi|320100575|ref|YP_004176167.1| - 4.7e-45 154.0 0.1 2.1e-44 151.8 0.0 1.9 2 0 0 2 2 2 1 Carbohydrate kinase YjeF_N PF03853.15 gi|320100575|ref|YP_004176167.1| - 3.1e-40 137.8 0.5 7e-40 136.7 0.4 1.6 2 0 0 2 2 2 1 YjeF-related protein N-terminus TPP_enzyme_M PF00205.22 gi|320100575|ref|YP_004176167.1| - 0.034 13.9 0.2 0.39 10.5 0.0 2.6 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain Tex_YqgF PF16921.5 gi|320100575|ref|YP_004176167.1| - 0.038 14.5 0.0 0.085 13.3 0.0 1.5 1 0 0 1 1 1 0 Tex protein YqgF-like domain NikR_C PF08753.11 gi|320100576|ref|YP_004176168.1| - 2e-21 75.9 2.4 2.8e-21 75.5 2.4 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_6 PF16762.5 gi|320100576|ref|YP_004176168.1| - 0.011 16.3 0.0 0.027 15.1 0.0 1.6 2 0 0 2 2 2 0 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|320100576|ref|YP_004176168.1| - 0.017 15.0 0.2 0.046 13.7 0.0 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|320100576|ref|YP_004176168.1| - 0.039 13.8 0.0 0.071 13.0 0.0 1.4 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Fe_dep_repr_C PF02742.15 gi|320100577|ref|YP_004176169.1| - 8.9e-19 67.4 3.1 1.1e-18 67.1 1.8 1.7 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|320100577|ref|YP_004176169.1| - 2.4e-16 59.7 0.1 9.1e-16 57.8 0.1 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|320100577|ref|YP_004176169.1| - 6e-07 29.3 0.3 1.7e-06 27.8 0.0 1.8 2 1 1 3 3 3 1 MarR family MarR PF01047.22 gi|320100577|ref|YP_004176169.1| - 1.2e-06 28.3 0.0 2.5e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|320100577|ref|YP_004176169.1| - 0.00017 22.0 0.0 0.00032 21.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|320100577|ref|YP_004176169.1| - 0.0002 21.1 0.0 0.00052 19.8 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|320100577|ref|YP_004176169.1| - 0.00025 20.7 0.0 0.0008 19.1 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain HTH_29 PF13551.6 gi|320100577|ref|YP_004176169.1| - 0.0004 20.3 0.0 0.0025 17.8 0.0 2.3 1 1 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|320100577|ref|YP_004176169.1| - 0.00074 19.1 0.0 0.0019 17.8 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|320100577|ref|YP_004176169.1| - 0.00099 18.9 0.1 0.0022 17.8 0.1 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|320100577|ref|YP_004176169.1| - 0.0013 19.0 0.0 0.0023 18.2 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|320100577|ref|YP_004176169.1| - 0.0014 18.4 0.0 0.0024 17.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|320100577|ref|YP_004176169.1| - 0.0015 18.5 0.0 0.0037 17.2 0.0 1.7 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|320100577|ref|YP_004176169.1| - 0.0016 18.1 0.0 0.0048 16.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|320100577|ref|YP_004176169.1| - 0.0024 17.9 0.0 0.004 17.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|320100577|ref|YP_004176169.1| - 0.013 15.2 0.0 0.024 14.3 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_24 PF13412.6 gi|320100577|ref|YP_004176169.1| - 0.019 14.5 0.0 0.045 13.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LcrG PF07216.12 gi|320100577|ref|YP_004176169.1| - 0.022 14.7 0.1 0.063 13.2 0.1 1.7 2 0 0 2 2 2 0 LcrG protein IF2_N PF04760.15 gi|320100577|ref|YP_004176169.1| - 0.035 13.9 0.0 0.22 11.4 0.0 2.3 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region HTH_45 PF14947.6 gi|320100577|ref|YP_004176169.1| - 0.041 13.9 0.0 0.08 12.9 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix Mrr_N PF14338.6 gi|320100577|ref|YP_004176169.1| - 0.057 13.6 0.1 0.47 10.6 0.0 2.2 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_CodY PF08222.11 gi|320100577|ref|YP_004176169.1| - 0.12 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain Topoisom_bac PF01131.20 gi|320100577|ref|YP_004176169.1| - 0.13 11.2 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_34 PF13601.6 gi|320100577|ref|YP_004176169.1| - 0.16 12.2 0.0 0.29 11.3 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Thioredoxin_3 PF13192.6 gi|320100578|ref|YP_004176170.1| - 1.3e-11 44.3 0.0 2.6e-07 30.6 0.0 2.5 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.24 gi|320100578|ref|YP_004176170.1| - 1.1e-06 28.8 0.7 8.9e-05 22.6 0.4 2.7 2 0 0 2 2 2 1 Glutaredoxin DUF2946 PF11162.8 gi|320100578|ref|YP_004176170.1| - 0.0052 17.4 0.3 0.11 13.2 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2946) Thioredoxin PF00085.20 gi|320100578|ref|YP_004176170.1| - 0.012 15.6 0.0 0.29 11.1 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin Thioredoxin_2 PF13098.6 gi|320100578|ref|YP_004176170.1| - 0.014 15.8 3.5 2.7 8.5 1.7 3.6 2 2 1 3 3 3 0 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|320100578|ref|YP_004176170.1| - 0.016 15.0 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_4 PF13462.6 gi|320100578|ref|YP_004176170.1| - 0.018 15.2 0.1 6.5 6.9 0.0 2.4 2 0 0 2 2 2 0 Thioredoxin TrmB PF01978.19 gi|320100579|ref|YP_004176171.1| - 3.7e-05 23.5 0.1 8.5e-05 22.4 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|320100579|ref|YP_004176171.1| - 4.7e-05 23.2 0.4 0.00092 19.1 0.1 2.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|320100579|ref|YP_004176171.1| - 0.00014 21.4 0.3 0.00033 20.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|320100579|ref|YP_004176171.1| - 0.00042 20.0 0.3 0.0015 18.3 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HemN_C PF06969.16 gi|320100579|ref|YP_004176171.1| - 0.0013 18.7 0.0 0.0066 16.5 0.0 2.2 2 0 0 2 2 2 1 HemN C-terminal domain Fe_dep_repress PF01325.19 gi|320100579|ref|YP_004176171.1| - 0.0037 17.4 0.0 0.0076 16.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.6 gi|320100579|ref|YP_004176171.1| - 0.0043 17.0 0.0 0.0096 15.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_AsnC-type PF13404.6 gi|320100579|ref|YP_004176171.1| - 0.014 15.2 1.1 0.064 13.1 0.9 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Prefoldin_2 PF01920.20 gi|320100579|ref|YP_004176171.1| - 0.016 15.2 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Prefoldin subunit Rx_N PF18052.1 gi|320100579|ref|YP_004176171.1| - 0.021 15.1 0.1 0.043 14.1 0.1 1.5 1 0 0 1 1 1 0 Rx N-terminal domain FaeA PF04703.12 gi|320100579|ref|YP_004176171.1| - 0.071 13.5 0.1 0.23 11.8 0.0 1.9 1 1 0 1 1 1 0 FaeA-like protein HSCB_C PF07743.13 gi|320100579|ref|YP_004176171.1| - 0.076 13.5 0.1 23 5.5 0.0 2.4 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain HTH_5 PF01022.20 gi|320100579|ref|YP_004176171.1| - 0.096 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|320100579|ref|YP_004176171.1| - 0.1 12.4 0.1 0.62 9.9 0.0 2.3 3 0 0 3 3 3 0 LexA DNA binding domain HTH_27 PF13463.6 gi|320100579|ref|YP_004176171.1| - 0.1 13.1 0.1 0.24 11.9 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4140 PF13600.6 gi|320100579|ref|YP_004176171.1| - 0.11 12.9 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) ABC_tran_CTD PF16326.5 gi|320100579|ref|YP_004176171.1| - 0.12 12.7 0.4 0.32 11.3 0.4 1.8 1 1 0 1 1 1 0 ABC transporter C-terminal domain IF2_N PF04760.15 gi|320100579|ref|YP_004176171.1| - 0.12 12.2 0.2 0.49 10.2 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Replic_Relax PF13814.6 gi|320100579|ref|YP_004176171.1| - 0.17 11.9 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 Replication-relaxation DUF2161 PF09929.9 gi|320100579|ref|YP_004176171.1| - 0.18 11.9 0.0 0.18 11.9 0.0 2.1 3 0 0 3 3 3 0 Putative PD-(D/E)XK phosphodiesterase (DUF2161) XdhC_C PF13478.6 gi|320100581|ref|YP_004176173.1| - 1.3e-29 103.2 0.0 1.8e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|320100581|ref|YP_004176173.1| - 1.5e-20 73.2 0.5 2.9e-20 72.2 0.5 1.5 1 0 0 1 1 1 1 XdhC and CoxI family TrkA_N PF02254.18 gi|320100581|ref|YP_004176173.1| - 3.5e-05 24.0 0.0 5.3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|320100581|ref|YP_004176173.1| - 0.011 15.1 0.0 0.13 11.7 0.0 2.0 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|320100581|ref|YP_004176173.1| - 0.016 15.8 0.0 0.029 15.0 0.0 1.5 1 0 0 1 1 1 0 PglD N-terminal domain AlaDh_PNT_C PF01262.21 gi|320100581|ref|YP_004176173.1| - 0.023 14.0 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|320100581|ref|YP_004176173.1| - 0.051 13.8 0.0 0.088 13.1 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain THUMP PF02926.17 gi|320100583|ref|YP_004176175.1| - 0.00042 20.4 0.1 0.00073 19.6 0.1 1.4 1 1 0 1 1 1 1 THUMP domain PhoU_div PF01865.16 gi|320100584|ref|YP_004176176.1| - 9.7e-13 47.9 2.8 2.8e-12 46.4 3.2 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|320100584|ref|YP_004176176.1| - 1.6e-07 31.6 3.3 0.0075 16.7 0.5 2.3 2 0 0 2 2 2 2 PhoU domain TPR_2 PF07719.17 gi|320100584|ref|YP_004176176.1| - 0.23 11.7 3.5 3 8.2 0.2 3.6 2 2 2 4 4 4 0 Tetratricopeptide repeat Aminotran_1_2 PF00155.21 gi|320100585|ref|YP_004176177.1| - 1.5e-41 142.8 0.0 1.8e-41 142.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|320100585|ref|YP_004176177.1| - 4.7e-06 25.7 0.0 9.1e-06 24.7 0.0 1.6 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|320100585|ref|YP_004176177.1| - 0.0053 16.1 0.0 0.0074 15.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|320100585|ref|YP_004176177.1| - 0.049 12.6 0.0 0.072 12.0 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|320100585|ref|YP_004176177.1| - 0.13 11.5 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family VWA_CoxE PF05762.14 gi|320100586|ref|YP_004176178.1| - 1.3e-06 27.9 0.0 2.4e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|320100586|ref|YP_004176178.1| - 1.8e-05 25.3 0.0 7.1e-05 23.4 0.0 2.0 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|320100586|ref|YP_004176178.1| - 2.8e-05 24.4 0.0 4.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|320100586|ref|YP_004176178.1| - 0.0038 17.2 0.0 0.0077 16.2 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|320100587|ref|YP_004176179.1| - 3.5e-26 91.9 0.6 3.8e-25 88.5 0.0 2.8 3 1 1 4 4 4 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|320100587|ref|YP_004176179.1| - 2.8e-06 27.2 0.0 4.4e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|320100587|ref|YP_004176179.1| - 1.9e-05 25.1 0.5 0.00034 21.0 0.0 3.1 3 1 0 4 4 4 1 ATPase family associated with various cellular activities (AAA) AAA_lid_8 PF17868.1 gi|320100587|ref|YP_004176179.1| - 2.6e-05 24.0 0.0 0.0001 22.1 0.0 2.1 1 0 0 1 1 1 1 AAA lid domain AAA_16 PF13191.6 gi|320100587|ref|YP_004176179.1| - 6e-05 23.5 0.5 0.00074 19.9 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|320100587|ref|YP_004176179.1| - 0.00046 19.6 0.0 0.0036 16.7 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|320100587|ref|YP_004176179.1| - 0.0006 20.1 0.3 0.0067 16.7 0.0 2.8 2 2 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|320100587|ref|YP_004176179.1| - 0.013 15.3 0.1 0.21 11.3 0.1 2.4 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|320100587|ref|YP_004176179.1| - 0.023 13.8 0.0 0.22 10.6 0.0 2.3 2 0 0 2 2 2 0 MCM P-loop domain HEAT_2 PF13646.6 gi|320100587|ref|YP_004176179.1| - 0.028 14.8 0.1 0.081 13.3 0.1 1.8 1 0 0 1 1 1 0 HEAT repeats SelB-wing_2 PF09106.11 gi|320100587|ref|YP_004176179.1| - 0.19 12.0 2.9 1.8 8.8 0.1 3.7 4 0 0 4 4 4 0 Elongation factor SelB, winged helix DUF296 PF03479.15 gi|320100588|ref|YP_004176180.1| - 3.7e-16 59.4 1.9 4.3e-16 59.2 1.9 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain DUF123 PF01986.16 gi|320100589|ref|YP_004176181.1| - 5.2e-18 65.3 0.0 6.6e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 tRNA_anti-codon PF01336.25 gi|320100590|ref|YP_004176182.1| - 2e-09 37.3 0.2 2.9e-09 36.8 0.2 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|320100590|ref|YP_004176182.1| - 0.0023 17.8 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|320100590|ref|YP_004176182.1| - 0.16 11.7 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 PqqD PF05402.12 gi|320100591|ref|YP_004176183.1| - 5.7e-12 45.8 0.4 8.1e-12 45.3 0.4 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_5 PF01022.20 gi|320100591|ref|YP_004176183.1| - 0.0058 16.5 0.1 3.6 7.5 0.0 2.6 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family DUF2603 PF10788.9 gi|320100591|ref|YP_004176183.1| - 0.098 12.7 0.1 0.16 12.0 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2603) Ecm29 PF13001.7 gi|320100591|ref|YP_004176183.1| - 0.12 11.0 0.0 0.12 11.0 0.0 1.0 1 0 0 1 1 1 0 Proteasome stabiliser HpcH_HpaI PF03328.14 gi|320100591|ref|YP_004176183.1| - 0.14 11.3 0.0 0.16 11.1 0.0 1.1 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family Thiolase_N PF00108.23 gi|320100592|ref|YP_004176184.1| - 3.4e-17 62.7 0.4 4.4e-16 59.0 0.0 2.5 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|320100592|ref|YP_004176184.1| - 5.3e-12 45.5 0.1 1.2e-11 44.3 0.1 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|320100592|ref|YP_004176184.1| - 0.00015 21.4 3.0 0.00015 21.4 3.0 3.1 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|320100592|ref|YP_004176184.1| - 0.0007 19.6 1.4 0.12 12.4 0.2 2.7 2 0 0 2 2 2 2 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|320100592|ref|YP_004176184.1| - 0.023 14.5 7.8 0.64 9.9 0.1 3.4 4 0 0 4 4 4 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Carboxyl_trans PF01039.22 gi|320100593|ref|YP_004176185.1| - 1.7e-184 614.1 0.1 1.9e-184 614.0 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|320100593|ref|YP_004176185.1| - 6.3e-06 25.8 0.0 1.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) PMC2NT PF08066.12 gi|320100593|ref|YP_004176185.1| - 0.0057 17.3 0.0 0.012 16.3 0.0 1.5 1 0 0 1 1 1 1 PMC2NT (NUC016) domain DUF417 PF04224.12 gi|320100593|ref|YP_004176185.1| - 0.073 12.6 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF417 DUF2780 PF11075.8 gi|320100595|ref|YP_004176187.1| - 0.024 14.8 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function VcgC/VcgE (DUF2780) PDDEXK_3 PF13366.6 gi|320100595|ref|YP_004176187.1| - 0.034 14.5 0.0 0.1 13.0 0.0 1.8 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Biotin_lipoyl PF00364.22 gi|320100596|ref|YP_004176188.1| - 1.8e-14 53.3 7.3 4.5e-14 52.0 7.3 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|320100596|ref|YP_004176188.1| - 3.5e-10 39.5 2.7 3.9e-05 23.4 0.1 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|320100596|ref|YP_004176188.1| - 1.5e-06 27.6 2.6 0.0062 15.8 0.1 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|320100596|ref|YP_004176188.1| - 2.5e-06 28.2 4.4 0.022 15.4 0.1 2.8 2 1 1 3 3 3 2 HlyD family secretion protein DUF2118 PF09891.9 gi|320100596|ref|YP_004176188.1| - 0.0023 17.9 8.5 0.011 15.7 5.5 2.2 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2118) GCV_H PF01597.19 gi|320100596|ref|YP_004176188.1| - 0.0084 16.0 2.1 0.0084 16.0 2.1 2.2 1 1 1 2 2 2 1 Glycine cleavage H-protein PASTA PF03793.19 gi|320100596|ref|YP_004176188.1| - 0.014 15.2 7.9 0.51 10.2 0.4 2.4 1 1 1 2 2 2 0 PASTA domain PTS_EIIA_1 PF00358.20 gi|320100596|ref|YP_004176188.1| - 0.033 14.0 3.2 2.6 7.8 0.1 2.4 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Hjc PF01870.18 gi|320100596|ref|YP_004176188.1| - 0.098 12.7 1.3 0.21 11.6 0.7 1.9 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) NQRA PF05896.11 gi|320100596|ref|YP_004176188.1| - 0.13 11.7 6.5 2.2 7.6 0.5 2.1 1 1 1 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) QRPTase_N PF02749.16 gi|320100596|ref|YP_004176188.1| - 0.26 11.4 1.9 9.6 6.3 0.1 3.0 2 1 1 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_S24 PF00717.23 gi|320100596|ref|YP_004176188.1| - 0.83 9.7 6.3 0.54 10.3 0.9 3.0 2 1 1 3 3 3 0 Peptidase S24-like Wyosine_form PF08608.12 gi|320100597|ref|YP_004176189.1| - 2.9e-19 69.2 0.0 5.3e-19 68.3 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|320100597|ref|YP_004176189.1| - 2.9e-16 60.3 0.0 1.2e-15 58.3 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily HAD PF12710.7 gi|320100597|ref|YP_004176189.1| - 0.075 13.4 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase NAD_binding_2 PF03446.15 gi|320100598|ref|YP_004176190.1| - 3.7e-19 69.4 0.2 7e-19 68.5 0.2 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|320100598|ref|YP_004176190.1| - 2.4e-07 30.9 0.0 4.6e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|320100598|ref|YP_004176190.1| - 0.00014 22.4 0.0 0.00031 21.3 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_11 PF14833.6 gi|320100598|ref|YP_004176190.1| - 0.0032 17.7 0.0 0.0058 16.9 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FAD_binding_3 PF01494.19 gi|320100598|ref|YP_004176190.1| - 0.0059 15.9 0.1 0.0091 15.3 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|320100598|ref|YP_004176190.1| - 0.0059 16.5 0.0 0.0098 15.8 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|320100598|ref|YP_004176190.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|320100598|ref|YP_004176190.1| - 0.066 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|320100598|ref|YP_004176190.1| - 0.16 12.2 0.0 0.29 11.4 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ERCC4 PF02732.15 gi|320100599|ref|YP_004176191.1| - 2.2e-15 57.2 0.0 3.3e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.7 gi|320100599|ref|YP_004176191.1| - 1.6e-11 44.1 0.0 3e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|320100599|ref|YP_004176191.1| - 1.2e-10 41.8 0.1 5.5e-10 39.7 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|320100599|ref|YP_004176191.1| - 1.1e-06 28.2 0.0 1.7e-05 24.5 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.15 gi|320100599|ref|YP_004176191.1| - 0.0082 15.9 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain HHH_3 PF12836.7 gi|320100599|ref|YP_004176191.1| - 0.08 13.2 0.1 0.25 11.6 0.1 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix motif Pex2_Pex12 PF04757.14 gi|320100599|ref|YP_004176191.1| - 0.096 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region Glycos_transf_4 PF00953.21 gi|320100600|ref|YP_004176192.1| - 4.3e-29 101.5 11.5 4.3e-29 101.5 11.5 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 4 HTH_42 PF06224.12 gi|320100601|ref|YP_004176193.1| - 0.0093 15.5 0.1 0.011 15.3 0.1 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain zf-C2HC5 PF06221.13 gi|320100602|ref|YP_004176194.1| - 0.049 13.6 0.2 0.12 12.4 0.1 1.7 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.6 gi|320100602|ref|YP_004176194.1| - 0.21 11.0 2.1 0.41 10.1 0.1 2.4 3 0 0 3 3 3 0 zinc-ribbon domain VIT1 PF01988.19 gi|320100604|ref|YP_004176196.1| - 7.8e-25 88.0 13.1 1e-24 87.6 13.1 1.2 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.17 gi|320100604|ref|YP_004176196.1| - 0.01 16.2 0.0 0.033 14.6 0.0 1.8 1 1 0 1 1 1 0 Rubrerythrin Rrf2 PF02082.20 gi|320100604|ref|YP_004176196.1| - 0.058 13.7 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator CitMHS PF03600.16 gi|320100605|ref|YP_004176197.1| - 2.8e-33 115.4 30.0 2.8e-33 115.4 30.0 2.1 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|320100605|ref|YP_004176197.1| - 1.1e-13 51.1 30.8 5.1e-07 29.1 10.3 2.1 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region DctM PF06808.12 gi|320100605|ref|YP_004176197.1| - 0.00014 20.8 6.2 0.00014 20.8 6.2 2.2 1 1 0 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component TFIIB PF00382.19 gi|320100606|ref|YP_004176198.1| - 1e-05 25.5 3.1 0.00016 21.6 0.2 2.3 2 0 0 2 2 2 1 Transcription factor TFIIB repeat Cyclin_C PF02984.19 gi|320100606|ref|YP_004176198.1| - 0.0016 18.5 0.0 0.46 10.6 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain TRAPP PF04051.16 gi|320100606|ref|YP_004176198.1| - 0.086 12.6 0.0 4.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Transport protein particle (TRAPP) component HTH_29 PF13551.6 gi|320100606|ref|YP_004176198.1| - 0.12 12.4 0.5 1.6 8.8 0.1 2.6 2 1 0 2 2 2 0 Winged helix-turn helix TrmB PF01978.19 gi|320100606|ref|YP_004176198.1| - 0.13 12.2 0.3 13 5.8 0.0 2.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|320100606|ref|YP_004176198.1| - 0.15 11.9 0.2 0.53 10.1 0.2 2.0 1 1 0 1 1 1 0 Homeodomain-like domain Pilin_N PF07790.11 gi|320100607|ref|YP_004176199.1| - 5.3e-05 24.1 6.1 5.3e-05 24.1 6.1 1.8 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal A2M PF00207.22 gi|320100607|ref|YP_004176199.1| - 0.013 15.3 0.1 0.038 13.8 0.0 1.8 2 0 0 2 2 2 0 Alpha-2-macroglobulin family CARDB PF07705.11 gi|320100607|ref|YP_004176199.1| - 0.026 14.8 2.6 0.037 14.3 2.6 1.3 1 0 0 1 1 1 0 CARDB DUF4352 PF11611.8 gi|320100607|ref|YP_004176199.1| - 0.096 13.0 1.7 0.31 11.3 0.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4352) DUF4179 PF13786.6 gi|320100607|ref|YP_004176199.1| - 0.43 11.1 6.8 1 9.9 6.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4179) Arch_flagellin PF01917.16 gi|320100607|ref|YP_004176199.1| - 0.49 10.6 17.2 4.7 7.4 17.2 2.2 1 1 0 1 1 1 0 Archaebacterial flagellin Pap_E4 PF02711.14 gi|320100607|ref|YP_004176199.1| - 7.5 7.6 6.2 20 6.2 0.1 2.2 2 0 0 2 2 2 0 E4 protein OrfB_Zn_ribbon PF07282.11 gi|320100608|ref|YP_004176200.1| - 3.2e-22 78.2 0.6 6.5e-22 77.2 0.6 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF2285 PF10074.9 gi|320100608|ref|YP_004176200.1| - 0.0046 17.6 1.8 0.2 12.3 1.7 2.7 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2285) OrfB_IS605 PF01385.19 gi|320100608|ref|YP_004176200.1| - 0.0085 16.3 0.9 0.013 15.7 0.3 1.7 2 0 0 2 2 1 1 Probable transposase zinc_ribbon_2 PF13240.6 gi|320100608|ref|YP_004176200.1| - 0.013 15.2 3.5 2 8.3 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|320100608|ref|YP_004176200.1| - 0.017 15.1 3.1 2.7 8.1 0.1 3.3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|320100608|ref|YP_004176200.1| - 0.021 14.8 3.7 0.021 14.8 3.7 2.2 2 0 0 2 2 2 0 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|320100608|ref|YP_004176200.1| - 0.035 14.2 1.3 0.035 14.2 1.3 2.1 2 1 0 2 2 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|320100608|ref|YP_004176200.1| - 0.058 12.9 3.2 0.18 11.3 0.6 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L37e PF01907.19 gi|320100608|ref|YP_004176200.1| - 0.16 12.1 0.5 0.39 10.9 0.5 1.6 1 0 0 1 1 1 0 Ribosomal protein L37e NRDD PF13597.6 gi|320100608|ref|YP_004176200.1| - 0.22 10.3 0.6 0.33 9.7 0.6 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|320100608|ref|YP_004176200.1| - 0.92 9.7 5.8 2.6 8.2 0.3 2.7 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|320100608|ref|YP_004176200.1| - 0.92 9.8 4.9 0.78 10.1 1.0 2.4 2 0 0 2 2 2 0 zinc-ribbon zf-NADH-PPase PF09297.11 gi|320100608|ref|YP_004176200.1| - 1 9.1 4.2 1.1 9.0 2.5 2.0 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|320100608|ref|YP_004176200.1| - 1.6 8.2 9.3 1.6 8.2 0.2 2.8 2 1 1 3 3 3 0 zinc-ribbon domain POR PF01558.18 gi|320100609|ref|YP_004176201.1| - 7.6e-33 114.1 0.4 8.8e-33 113.8 0.4 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|320100610|ref|YP_004176202.1| - 1.4e-24 86.6 0.0 2.7e-24 85.7 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|320100610|ref|YP_004176202.1| - 5.6e-17 62.2 0.0 8.1e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|320100610|ref|YP_004176202.1| - 5.5e-10 38.6 12.1 4.3e-05 23.1 3.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|320100610|ref|YP_004176202.1| - 3.5e-06 26.7 2.5 1.5e-05 24.7 0.4 2.4 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.7 gi|320100610|ref|YP_004176202.1| - 9.2e-06 26.2 9.0 0.013 16.1 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|320100610|ref|YP_004176202.1| - 1.7e-05 24.7 17.9 0.00043 20.2 1.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|320100610|ref|YP_004176202.1| - 0.00017 21.6 9.4 0.00043 20.3 9.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|320100610|ref|YP_004176202.1| - 0.00027 21.0 7.6 0.00062 19.8 7.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|320100610|ref|YP_004176202.1| - 0.0008 19.5 9.8 0.0017 18.4 9.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|320100610|ref|YP_004176202.1| - 0.0012 18.9 4.5 0.0012 18.9 4.5 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|320100610|ref|YP_004176202.1| - 0.0034 17.8 12.5 0.14 12.8 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Transketolase_C PF02780.20 gi|320100610|ref|YP_004176202.1| - 0.0065 16.4 0.0 0.023 14.6 0.0 1.9 1 0 0 1 1 1 1 Transketolase, C-terminal domain DXP_synthase_N PF13292.6 gi|320100610|ref|YP_004176202.1| - 0.16 11.1 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_15 PF13459.6 gi|320100610|ref|YP_004176202.1| - 0.24 12.2 10.1 0.33 11.7 0.7 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|320100610|ref|YP_004176202.1| - 0.83 10.6 11.5 0.86 10.6 1.6 2.4 1 1 3 4 4 4 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|320100610|ref|YP_004176202.1| - 2.6 9.2 14.4 5.7 8.1 4.1 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|320100610|ref|YP_004176202.1| - 3 8.5 13.3 1 10.0 2.6 2.5 1 1 2 3 3 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|320100610|ref|YP_004176202.1| - 3.6 8.1 13.3 3.9e+03 -1.6 13.3 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|320100610|ref|YP_004176202.1| - 8.3 7.3 9.0 20 6.1 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|320100610|ref|YP_004176202.1| - 9.4 6.9 11.3 0.85 10.2 1.1 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I ATP-grasp_5 PF13549.6 gi|320100611|ref|YP_004176203.1| - 1.3e-74 250.4 0.1 1.6e-74 250.1 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|320100611|ref|YP_004176203.1| - 0.00034 20.2 0.0 0.00043 19.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|320100611|ref|YP_004176203.1| - 0.064 12.8 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain ATP_bind_3 PF01171.20 gi|320100612|ref|YP_004176204.1| - 1.8e-17 63.7 0.0 4.8e-17 62.3 0.0 1.6 1 1 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|320100612|ref|YP_004176204.1| - 0.00034 20.2 0.1 0.82 9.1 0.1 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|320100612|ref|YP_004176204.1| - 0.0027 16.6 0.0 0.0045 15.8 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase RecR PF02132.15 gi|320100612|ref|YP_004176204.1| - 0.0039 16.7 2.6 0.0039 16.7 2.6 3.0 3 0 0 3 3 3 1 RecR protein C1_2 PF03107.16 gi|320100612|ref|YP_004176204.1| - 0.023 15.0 1.8 0.79 10.1 0.1 3.2 3 0 0 3 3 3 0 C1 domain Asn_synthase PF00733.21 gi|320100612|ref|YP_004176204.1| - 0.037 13.7 0.1 0.051 13.2 0.1 1.1 1 0 0 1 1 1 0 Asparagine synthase ThiI PF02568.14 gi|320100612|ref|YP_004176204.1| - 0.13 11.8 0.1 0.55 9.8 0.1 1.9 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|320100612|ref|YP_004176204.1| - 0.16 11.1 0.1 0.26 10.4 0.1 1.3 1 0 0 1 1 1 0 NAD synthase Vps36-NZF-N PF16988.5 gi|320100612|ref|YP_004176204.1| - 0.76 9.2 2.5 6.6 6.2 0.0 2.7 3 0 0 3 3 3 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain DUF1616 PF07760.11 gi|320100613|ref|YP_004176205.1| - 2e-36 125.9 7.5 2.4e-36 125.6 7.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) 7TMR-DISM_7TM PF07695.11 gi|320100613|ref|YP_004176205.1| - 0.24 11.3 9.0 0.45 10.4 9.0 1.4 1 1 0 1 1 1 0 7TM diverse intracellular signalling DUF4395 PF14340.6 gi|320100613|ref|YP_004176205.1| - 0.76 10.1 9.2 2.9 8.2 9.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) DUF1616 PF07760.11 gi|320100614|ref|YP_004176206.1| - 1e-08 34.9 0.0 1.1e-08 34.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF58 PF01882.18 gi|320100616|ref|YP_004176208.1| - 2.4e-09 37.3 0.0 1.1e-08 35.3 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|320100621|ref|YP_004176213.1| - 2.8e-43 146.9 0.0 4.1e-43 146.4 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|320100621|ref|YP_004176213.1| - 5.1e-20 71.1 0.5 5.1e-20 71.1 0.5 2.0 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|320100621|ref|YP_004176213.1| - 4.2e-12 46.2 0.0 6.7e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|320100621|ref|YP_004176213.1| - 1.9e-08 34.8 0.0 5.8e-08 33.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|320100621|ref|YP_004176213.1| - 1.5e-07 31.3 0.4 0.011 15.4 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_16 PF13191.6 gi|320100621|ref|YP_004176213.1| - 1.1e-05 25.8 0.6 0.00048 20.6 0.1 2.2 1 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|320100621|ref|YP_004176213.1| - 4.6e-05 23.2 0.1 0.0003 20.6 0.1 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|320100621|ref|YP_004176213.1| - 0.00023 20.6 0.3 0.0039 16.6 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|320100621|ref|YP_004176213.1| - 0.00034 20.4 1.3 0.0038 17.0 0.5 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|320100621|ref|YP_004176213.1| - 0.00073 20.1 0.0 0.0018 18.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain MCM PF00493.23 gi|320100621|ref|YP_004176213.1| - 0.0017 17.5 0.0 0.02 14.0 0.0 2.1 1 1 0 1 1 1 1 MCM P-loop domain AAA_22 PF13401.6 gi|320100621|ref|YP_004176213.1| - 0.011 16.0 0.4 0.04 14.2 0.4 2.0 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|320100621|ref|YP_004176213.1| - 0.011 15.0 0.3 0.026 13.8 0.1 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.6 gi|320100621|ref|YP_004176213.1| - 0.011 15.9 0.1 0.026 14.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|320100621|ref|YP_004176213.1| - 0.016 14.5 0.3 0.027 13.7 0.3 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain NACHT PF05729.12 gi|320100621|ref|YP_004176213.1| - 0.021 14.8 0.3 0.16 11.9 0.2 2.3 3 0 0 3 3 3 0 NACHT domain Hydin_ADK PF17213.3 gi|320100621|ref|YP_004176213.1| - 0.022 15.0 0.2 5.8 7.1 0.2 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain RNA_helicase PF00910.22 gi|320100621|ref|YP_004176213.1| - 0.029 14.7 0.0 0.068 13.6 0.0 1.7 1 1 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|320100621|ref|YP_004176213.1| - 0.061 13.3 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|320100621|ref|YP_004176213.1| - 0.084 12.6 0.1 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ATPase PF06745.13 gi|320100621|ref|YP_004176213.1| - 0.11 11.9 0.2 0.23 10.8 0.2 1.5 1 0 0 1 1 1 0 KaiC Sigma54_activ_2 PF14532.6 gi|320100621|ref|YP_004176213.1| - 0.15 12.2 0.0 0.33 11.1 0.0 1.5 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_28 PF13521.6 gi|320100621|ref|YP_004176213.1| - 0.17 12.1 0.0 0.34 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Phage_stabilise PF11134.8 gi|320100621|ref|YP_004176213.1| - 0.18 10.6 0.0 0.3 9.9 0.0 1.3 1 0 0 1 1 1 0 Phage stabilisation protein AAA_11 PF13086.6 gi|320100621|ref|YP_004176213.1| - 0.18 11.6 0.0 0.29 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|320100621|ref|YP_004176213.1| - 0.18 10.9 0.1 0.29 10.2 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase Parvo_NS1 PF01057.17 gi|320100621|ref|YP_004176213.1| - 0.19 10.8 0.0 0.32 10.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Glycos_transf_2 PF00535.26 gi|320100623|ref|YP_004176215.1| - 3e-20 72.7 0.0 3.9e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|320100623|ref|YP_004176215.1| - 3.8e-10 40.1 0.0 5.3e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|320100623|ref|YP_004176215.1| - 3.4e-05 24.3 0.3 7.2e-05 23.2 0.1 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.6 gi|320100623|ref|YP_004176215.1| - 0.0094 16.5 0.0 0.027 15.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 DUF3624 PF12292.8 gi|320100623|ref|YP_004176215.1| - 0.013 15.9 0.9 0.037 14.4 0.9 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) Glycos_transf_2 PF00535.26 gi|320100624|ref|YP_004176216.1| - 1.2e-24 87.0 0.0 1.9e-24 86.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|320100624|ref|YP_004176216.1| - 7.1e-24 85.0 0.0 2.4e-23 83.2 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|320100624|ref|YP_004176216.1| - 2.2e-13 50.6 0.2 3.3e-13 50.0 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|320100624|ref|YP_004176216.1| - 4.4e-09 36.1 0.0 9.2e-09 35.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|320100624|ref|YP_004176216.1| - 0.00031 21.2 0.2 0.00096 19.6 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|320100625|ref|YP_004176217.1| - 1e-07 32.1 0.0 1.3e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|320100625|ref|YP_004176217.1| - 1.6e-06 28.0 0.0 3.3e-06 27.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|320100625|ref|YP_004176217.1| - 0.03 13.8 0.1 0.069 12.6 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.20 gi|320100626|ref|YP_004176218.1| - 3.2e-34 118.0 0.1 9.8e-34 116.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|320100626|ref|YP_004176218.1| - 1.9e-23 83.4 0.1 4.3e-23 82.2 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|320100626|ref|YP_004176218.1| - 1.7e-20 73.7 0.4 4e-20 72.5 0.4 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|320100626|ref|YP_004176218.1| - 1.8e-13 51.3 0.0 3.3e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|320100626|ref|YP_004176218.1| - 3.4e-05 23.9 0.0 7.5e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|320100626|ref|YP_004176218.1| - 5.1e-05 23.1 0.1 6.9e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|320100626|ref|YP_004176218.1| - 0.016 15.6 0.0 0.033 14.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|320100628|ref|YP_004176220.1| - 1.3e-30 106.2 0.0 1.7e-30 105.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|320100628|ref|YP_004176220.1| - 4.2e-22 79.0 0.0 5.9e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|320100628|ref|YP_004176220.1| - 2e-07 31.3 0.2 4.2e-07 30.3 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Polysacc_deac_1 PF01522.21 gi|320100629|ref|YP_004176221.1| - 1.2e-28 99.5 0.0 5.1e-28 97.5 0.0 1.8 2 0 0 2 2 2 1 Polysaccharide deacetylase HTH_39 PF14090.6 gi|320100629|ref|YP_004176221.1| - 0.091 12.5 0.2 0.67 9.7 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4675 PF15720.5 gi|320100629|ref|YP_004176221.1| - 0.17 11.7 0.0 0.23 11.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4675) Glyco_trans_1_4 PF13692.6 gi|320100630|ref|YP_004176222.1| - 7e-09 36.2 0.0 1.4e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|320100630|ref|YP_004176222.1| - 2.4e-08 33.7 0.0 4.1e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 GFO_IDH_MocA PF01408.22 gi|320100631|ref|YP_004176223.1| - 1.9e-29 102.9 0.4 2.7e-29 102.4 0.4 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|320100631|ref|YP_004176223.1| - 0.00032 21.2 0.1 0.00058 20.4 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 gi|320100631|ref|YP_004176223.1| - 0.00066 19.7 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding_2 PF13380.6 gi|320100631|ref|YP_004176223.1| - 0.023 15.2 0.2 0.043 14.3 0.2 1.4 1 0 0 1 1 1 0 CoA binding domain NAD_binding_3 PF03447.16 gi|320100631|ref|YP_004176223.1| - 0.041 14.5 0.2 0.074 13.7 0.2 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|320100631|ref|YP_004176223.1| - 0.047 13.7 0.2 0.097 12.7 0.0 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Biotin_carb_N PF00289.22 gi|320100631|ref|YP_004176223.1| - 0.071 13.7 0.1 0.16 12.6 0.1 1.5 1 1 0 1 1 1 0 Biotin carboxylase, N-terminal domain CoA_binding PF02629.19 gi|320100631|ref|YP_004176223.1| - 0.15 12.8 0.1 0.27 11.9 0.1 1.4 1 0 0 1 1 1 0 CoA binding domain NAD_binding_7 PF13241.6 gi|320100631|ref|YP_004176223.1| - 0.19 12.2 0.5 0.38 11.2 0.1 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding Glyco_tranf_2_3 PF13641.6 gi|320100632|ref|YP_004176224.1| - 2e-11 44.2 0.1 2.9e-11 43.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|320100632|ref|YP_004176224.1| - 3.8e-10 39.8 0.0 6.1e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|320100632|ref|YP_004176224.1| - 1.2e-05 25.4 0.2 4.7e-05 23.4 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|320100632|ref|YP_004176224.1| - 1.3e-05 24.8 0.0 2.9e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|320100632|ref|YP_004176224.1| - 0.0035 16.9 0.0 0.028 13.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|320100632|ref|YP_004176224.1| - 0.0088 15.7 0.0 0.033 13.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family Gal-bind_lectin PF00337.22 gi|320100632|ref|YP_004176224.1| - 0.15 11.6 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 Galactoside-binding lectin Glycos_transf_2 PF00535.26 gi|320100633|ref|YP_004176225.1| - 5.4e-20 71.9 0.0 8.9e-20 71.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|320100633|ref|YP_004176225.1| - 3.8e-11 43.3 0.0 4e-10 40.0 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|320100633|ref|YP_004176225.1| - 1.9e-10 40.7 0.0 8e-10 38.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Toprim_3 PF13362.6 gi|320100633|ref|YP_004176225.1| - 0.02 15.3 0.0 11 6.5 0.0 2.6 1 1 1 2 2 2 0 Toprim domain CAP59_mtransfer PF11735.8 gi|320100633|ref|YP_004176225.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 2 0 0 2 2 2 0 Cryptococcal mannosyltransferase 1 Na_H_antiport_2 PF13726.6 gi|320100633|ref|YP_004176225.1| - 0.62 10.2 4.8 21 5.3 0.0 2.4 2 0 0 2 2 2 0 Na+-H+ antiporter family Glycos_transf_2 PF00535.26 gi|320100635|ref|YP_004176227.1| - 4.2e-20 72.2 0.0 1.3e-19 70.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|320100635|ref|YP_004176227.1| - 2.9e-19 69.9 0.0 3.9e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|320100635|ref|YP_004176227.1| - 9.1e-09 35.5 0.2 1.9e-08 34.4 0.2 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|320100635|ref|YP_004176227.1| - 0.0029 17.1 0.1 0.0074 15.8 0.0 1.7 1 1 1 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|320100635|ref|YP_004176227.1| - 0.02 14.4 0.0 6.1 6.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.14 gi|320100635|ref|YP_004176227.1| - 0.11 12.1 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Polysacc_synt PF01943.17 gi|320100636|ref|YP_004176228.1| - 4.3e-24 85.4 43.5 6.9e-23 81.4 22.8 2.6 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|320100636|ref|YP_004176228.1| - 2.1e-22 79.7 11.7 2.1e-22 79.7 11.7 1.7 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|320100636|ref|YP_004176228.1| - 8.8e-13 48.5 40.1 6e-12 45.8 19.2 4.4 1 1 4 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|320100636|ref|YP_004176228.1| - 1.2e-06 28.3 39.7 2.5e-05 24.0 7.9 4.1 2 2 0 3 3 3 2 MatE Glycos_transf_1 PF00534.20 gi|320100637|ref|YP_004176229.1| - 2.7e-13 49.8 0.0 9.2e-13 48.1 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|320100637|ref|YP_004176229.1| - 8.7e-11 42.4 0.0 3.7e-10 40.4 0.0 2.1 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|320100637|ref|YP_004176229.1| - 5e-06 26.6 4.4 5.2e-06 26.6 2.0 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|320100637|ref|YP_004176229.1| - 0.00011 22.6 0.5 0.00011 22.6 0.5 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|320100637|ref|YP_004176229.1| - 0.069 13.5 0.0 0.24 11.8 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 Thymidylate_kin PF02223.17 gi|320100638|ref|YP_004176230.1| - 1.8e-05 24.5 0.0 0.00055 19.7 0.0 2.0 2 0 0 2 2 2 1 Thymidylate kinase SRP54 PF00448.22 gi|320100638|ref|YP_004176230.1| - 0.0012 18.5 0.2 0.002 17.8 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|320100638|ref|YP_004176230.1| - 0.0034 17.6 0.0 0.024 14.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|320100638|ref|YP_004176230.1| - 0.0036 17.8 0.1 0.051 14.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|320100638|ref|YP_004176230.1| - 0.013 15.4 0.9 0.021 14.7 0.3 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|320100638|ref|YP_004176230.1| - 0.035 14.5 0.2 0.054 13.9 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 gi|320100638|ref|YP_004176230.1| - 0.082 11.9 0.2 0.12 11.4 0.2 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 gi|320100638|ref|YP_004176230.1| - 0.12 12.2 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase NTPase_1 PF03266.15 gi|320100638|ref|YP_004176230.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_28 PF13521.6 gi|320100638|ref|YP_004176230.1| - 0.21 11.8 0.1 0.32 11.2 0.1 1.2 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|320100638|ref|YP_004176230.1| - 0.24 11.5 0.2 0.45 10.6 0.2 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Glyco_transf_4 PF13439.6 gi|320100639|ref|YP_004176231.1| - 2.7e-05 24.3 0.0 5e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|320100639|ref|YP_004176231.1| - 4.3e-05 24.0 0.0 0.00011 22.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|320100639|ref|YP_004176231.1| - 0.00039 20.9 0.0 0.0007 20.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|320100640|ref|YP_004176232.1| - 9e-17 61.1 0.0 1.4e-16 60.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|320100640|ref|YP_004176232.1| - 2e-13 50.9 0.0 4e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|320100640|ref|YP_004176232.1| - 0.00068 20.0 0.0 0.0015 18.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3880 PF12996.7 gi|320100640|ref|YP_004176232.1| - 0.00095 19.2 0.0 0.0017 18.4 0.0 1.4 1 0 0 1 1 1 1 DUF based on E. rectale Gene description (DUF3880) UNC45-central PF11701.8 gi|320100640|ref|YP_004176232.1| - 0.026 14.5 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Myosin-binding striated muscle assembly central AAA_18 PF13238.6 gi|320100641|ref|YP_004176233.1| - 0.00055 20.5 0.6 0.005 17.4 0.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|320100641|ref|YP_004176233.1| - 0.032 14.5 0.2 0.13 12.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|320100641|ref|YP_004176233.1| - 0.039 13.1 0.1 0.056 12.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.20 gi|320100641|ref|YP_004176233.1| - 0.07 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase SRP54 PF00448.22 gi|320100641|ref|YP_004176233.1| - 0.11 12.2 0.0 0.28 10.8 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|320100641|ref|YP_004176233.1| - 0.18 12.4 0.0 0.28 11.7 0.0 1.2 1 0 0 1 1 1 0 ABC transporter Thymidylate_kin PF02223.17 gi|320100641|ref|YP_004176233.1| - 0.24 11.1 0.0 0.39 10.4 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase NTP_transf_5 PF14907.6 gi|320100642|ref|YP_004176234.1| - 1.2e-06 28.4 0.0 2.3e-06 27.4 0.0 1.5 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase Methyltransf_24 PF13578.6 gi|320100643|ref|YP_004176235.1| - 1.4e-14 55.0 0.0 2.4e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CmcI PF04989.12 gi|320100643|ref|YP_004176235.1| - 6.9e-12 45.5 0.0 7.8e-11 42.0 0.0 2.0 1 1 0 1 1 1 1 Cephalosporin hydroxylase Methyltransf_3 PF01596.17 gi|320100643|ref|YP_004176235.1| - 2.7e-06 26.7 0.0 3.8e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase FtsJ PF01728.19 gi|320100643|ref|YP_004176235.1| - 0.012 15.7 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Phage_GP20 PF06810.11 gi|320100645|ref|YP_004176237.1| - 0.094 12.5 1.8 0.14 11.9 1.8 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 AAA_31 PF13614.6 gi|320100646|ref|YP_004176238.1| - 2.8e-28 99.0 0.0 3.9e-28 98.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|320100646|ref|YP_004176238.1| - 1.1e-17 64.3 0.0 1.6e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|320100646|ref|YP_004176238.1| - 2.1e-12 46.9 0.0 4e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|320100646|ref|YP_004176238.1| - 2.1e-07 30.5 0.0 1.2e-05 24.8 0.0 2.4 2 0 0 2 2 2 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|320100646|ref|YP_004176238.1| - 3.2e-07 30.1 0.1 2.2e-06 27.4 0.1 1.9 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|320100646|ref|YP_004176238.1| - 4.6e-06 26.3 3.0 2.1e-05 24.1 3.0 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase VirC1 PF07015.11 gi|320100646|ref|YP_004176238.1| - 0.004 16.5 0.0 0.052 12.8 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein Fer4_NifH PF00142.18 gi|320100646|ref|YP_004176238.1| - 0.0049 16.4 0.0 0.008 15.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 gi|320100646|ref|YP_004176238.1| - 0.0088 15.9 0.2 0.023 14.5 0.0 1.7 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|320100646|ref|YP_004176238.1| - 0.033 13.8 0.0 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|320100646|ref|YP_004176238.1| - 0.069 12.1 0.1 0.096 11.6 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Phage_int_SAM_4 PF13495.6 gi|320100647|ref|YP_004176239.1| - 4.1e-05 24.0 0.0 0.00011 22.5 0.0 1.7 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|320100647|ref|YP_004176239.1| - 9.6e-05 22.6 0.0 0.00051 20.3 0.0 2.1 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|320100647|ref|YP_004176239.1| - 0.012 16.0 0.0 0.024 15.0 0.0 1.7 1 1 1 2 2 2 0 Phage integrase SAM-like domain FANCI_S3 PF14677.6 gi|320100647|ref|YP_004176239.1| - 0.064 13.0 0.0 0.13 12.0 0.0 1.4 2 0 0 2 2 2 0 FANCI solenoid 3 PTPS_related PF10131.9 gi|320100649|ref|YP_004176241.1| - 2.1e-07 29.7 20.9 3e-07 29.2 20.9 1.2 1 0 0 1 1 1 1 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein Exosortase_EpsH PF09721.10 gi|320100650|ref|YP_004176242.1| - 8.7e-06 25.4 15.3 1.2e-05 25.0 15.3 1.2 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Glyco_tranf_2_3 PF13641.6 gi|320100651|ref|YP_004176243.1| - 7.4e-22 78.4 0.0 9.9e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|320100651|ref|YP_004176243.1| - 1.4e-17 64.0 0.1 2e-17 63.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|320100651|ref|YP_004176243.1| - 8.9e-11 42.1 2.1 8.9e-11 42.1 2.1 1.8 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|320100651|ref|YP_004176243.1| - 1.9e-08 34.0 0.2 1.9e-07 30.7 0.0 2.1 1 1 1 2 2 2 1 Glycosyl transferase family 21 Cellulose_synt PF03552.14 gi|320100651|ref|YP_004176243.1| - 0.016 13.7 1.3 0.081 11.4 0.3 2.2 1 1 2 3 3 3 0 Cellulose synthase Rad10 PF03834.14 gi|320100651|ref|YP_004176243.1| - 0.072 13.1 0.1 0.23 11.5 0.0 1.8 2 0 0 2 2 2 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) LapA_dom PF06305.11 gi|320100651|ref|YP_004176243.1| - 2.9 7.8 4.2 2.3 8.1 1.8 2.0 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain HTH_20 PF12840.7 gi|320100652|ref|YP_004176244.1| - 1.1e-12 47.8 1.1 3e-12 46.4 1.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|320100652|ref|YP_004176244.1| - 2.1e-07 30.7 0.0 5.8e-07 29.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|320100652|ref|YP_004176244.1| - 2.5e-05 23.7 0.5 9.1e-05 21.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|320100652|ref|YP_004176244.1| - 0.00014 21.7 0.2 0.0036 17.2 0.1 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|320100652|ref|YP_004176244.1| - 0.0015 18.5 0.2 0.025 14.5 0.0 2.6 3 0 0 3 3 3 1 MarR family HTH_IclR PF09339.10 gi|320100652|ref|YP_004176244.1| - 0.0034 17.1 1.1 0.0066 16.2 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|320100652|ref|YP_004176244.1| - 0.037 14.4 0.0 0.079 13.3 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_34 PF13601.6 gi|320100652|ref|YP_004176244.1| - 0.1 12.8 0.0 0.32 11.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain Phosphodiest PF01663.22 gi|320100654|ref|YP_004176246.1| - 3e-42 145.5 0.2 7.8e-22 78.3 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|320100654|ref|YP_004176246.1| - 7.9e-06 25.5 0.2 0.025 14.0 0.1 2.5 2 0 0 2 2 2 2 Sulfatase Metalloenzyme PF01676.18 gi|320100654|ref|YP_004176246.1| - 0.061 12.7 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Acylphosphatase PF00708.18 gi|320100655|ref|YP_004176247.1| - 3.1e-29 101.2 0.1 3.5e-29 101.1 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase OrfB_Zn_ribbon PF07282.11 gi|320100656|ref|YP_004176248.1| - 2.2e-22 78.8 0.2 4e-22 77.9 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|320100656|ref|YP_004176248.1| - 0.0026 17.2 1.2 0.12 11.9 0.1 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|320100656|ref|YP_004176248.1| - 0.011 15.8 1.0 0.63 10.2 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_IS605 PF01385.19 gi|320100656|ref|YP_004176248.1| - 0.011 15.9 0.9 0.024 14.9 0.9 1.5 1 0 0 1 1 1 0 Probable transposase zinc_ribbon_2 PF13240.6 gi|320100656|ref|YP_004176248.1| - 0.014 15.0 0.7 2.3 8.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|320100656|ref|YP_004176248.1| - 0.016 14.6 2.4 0.048 13.1 2.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|320100656|ref|YP_004176248.1| - 0.017 15.1 1.3 0.028 14.4 1.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|320100656|ref|YP_004176248.1| - 0.033 14.3 2.1 0.059 13.5 2.1 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-NADH-PPase PF09297.11 gi|320100656|ref|YP_004176248.1| - 0.039 13.6 2.3 0.088 12.5 2.3 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|320100656|ref|YP_004176248.1| - 0.044 13.8 2.7 1.5 8.9 0.5 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain C1_1 PF00130.22 gi|320100656|ref|YP_004176248.1| - 0.068 13.1 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_9 PF14369.6 gi|320100656|ref|YP_004176248.1| - 0.077 13.3 3.5 0.096 13.0 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon NRDD PF13597.6 gi|320100656|ref|YP_004176248.1| - 0.12 11.2 0.2 0.18 10.5 0.2 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 gi|320100656|ref|YP_004176248.1| - 0.14 12.2 0.3 0.27 11.3 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA VasL PF12486.8 gi|320100656|ref|YP_004176248.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Type VI secretion system, EvfB, or VasL DUF678 PF05077.12 gi|320100656|ref|YP_004176248.1| - 0.18 12.0 0.4 0.34 11.1 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF678) zf-Mss51 PF13824.6 gi|320100656|ref|YP_004176248.1| - 2.3 8.4 4.0 3.5 7.8 2.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 CN_hydrolase PF00795.22 gi|320100657|ref|YP_004176249.1| - 1.1e-33 116.7 0.0 1.4e-33 116.4 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase PBP_like PF12727.7 gi|320100659|ref|YP_004176251.1| - 1.2e-53 181.1 0.0 2e-53 180.4 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|320100659|ref|YP_004176251.1| - 2.7e-42 144.2 1.0 6e-42 143.1 1.0 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|320100659|ref|YP_004176251.1| - 3.4e-25 88.4 0.0 7.3e-25 87.3 0.0 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|320100659|ref|YP_004176251.1| - 5.7e-10 39.2 0.1 1.9e-09 37.6 0.1 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|320100659|ref|YP_004176251.1| - 0.0021 17.9 0.0 0.011 15.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DEAD PF00270.29 gi|320100660|ref|YP_004176252.1| - 2.3e-23 82.8 0.0 5.3e-23 81.7 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|320100660|ref|YP_004176252.1| - 3.2e-08 33.9 0.0 1.4e-07 31.9 0.0 2.0 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|320100660|ref|YP_004176252.1| - 6.6e-08 33.0 0.1 2.3e-07 31.3 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|320100660|ref|YP_004176252.1| - 2.3e-05 24.5 0.0 3.6e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|320100660|ref|YP_004176252.1| - 6.3e-05 23.0 0.0 0.00031 20.8 0.0 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA_30 PF13604.6 gi|320100660|ref|YP_004176252.1| - 0.0022 17.7 0.0 0.0082 15.9 0.0 2.0 1 0 0 1 1 1 1 AAA domain HemN_C PF06969.16 gi|320100660|ref|YP_004176252.1| - 0.048 13.7 0.1 0.41 10.7 0.0 2.8 4 0 0 4 4 4 0 HemN C-terminal domain RNA_pol_A_CTD PF03118.15 gi|320100660|ref|YP_004176252.1| - 0.15 11.8 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain UPRTase PF14681.6 gi|320100661|ref|YP_004176253.1| - 4e-34 117.9 0.0 4.8e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|320100661|ref|YP_004176253.1| - 1.2e-10 41.1 0.0 3.6e-10 39.6 0.0 1.7 1 1 1 2 2 2 1 Phosphoribosyl transferase domain ParA PF10609.9 gi|320100662|ref|YP_004176254.1| - 1.9e-41 142.1 0.0 2.8e-41 141.6 0.0 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|320100662|ref|YP_004176254.1| - 9.6e-10 38.6 0.0 1.4e-09 38.1 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|320100662|ref|YP_004176254.1| - 1.2e-06 28.5 0.3 0.00015 21.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|320100662|ref|YP_004176254.1| - 0.0025 17.1 0.1 0.012 14.8 0.1 1.9 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_16 PF13191.6 gi|320100662|ref|YP_004176254.1| - 0.014 15.8 0.1 0.025 15.0 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|320100662|ref|YP_004176254.1| - 0.098 12.2 0.1 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|320100662|ref|YP_004176254.1| - 0.16 11.7 0.1 5.9 6.6 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain HypA PF01155.19 gi|320100663|ref|YP_004176255.1| - 8e-18 64.5 0.0 1e-17 64.2 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|320100663|ref|YP_004176255.1| - 0.0015 18.8 0.2 1.7 9.0 0.0 2.2 2 0 0 2 2 2 2 Restriction alleviation protein Lar Mcm10 PF09332.11 gi|320100663|ref|YP_004176255.1| - 0.0029 17.1 0.0 0.0034 16.9 0.0 1.0 1 0 0 1 1 1 1 Mcm10 replication factor Zn_Tnp_IS1595 PF12760.7 gi|320100663|ref|YP_004176255.1| - 0.0039 17.1 0.2 0.084 12.9 0.1 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|320100663|ref|YP_004176255.1| - 0.01 15.7 2.2 2.4 8.1 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.13 gi|320100663|ref|YP_004176255.1| - 0.024 14.3 1.5 5.9 6.7 0.3 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|320100663|ref|YP_004176255.1| - 0.031 14.2 0.6 5.4 7.0 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|320100663|ref|YP_004176255.1| - 0.033 14.9 0.6 0.12 13.0 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2387 PF09526.10 gi|320100663|ref|YP_004176255.1| - 0.043 14.0 0.7 3.2 8.0 0.0 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Ribosomal_L37e PF01907.19 gi|320100663|ref|YP_004176255.1| - 0.047 13.9 0.8 0.46 10.7 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein L37e zinc_ribbon_15 PF17032.5 gi|320100663|ref|YP_004176255.1| - 0.09 13.5 0.0 0.13 13.0 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon family zf-CSL PF05207.13 gi|320100663|ref|YP_004176255.1| - 0.1 12.3 1.6 5.7 6.7 0.1 2.2 1 1 2 3 3 3 0 CSL zinc finger Mut7-C PF01927.16 gi|320100663|ref|YP_004176255.1| - 0.13 12.4 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain UPF0547 PF10571.9 gi|320100663|ref|YP_004176255.1| - 0.14 12.3 4.1 1.5 9.0 0.0 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|320100663|ref|YP_004176255.1| - 0.18 11.2 1.8 1.2 8.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|320100663|ref|YP_004176255.1| - 0.22 11.7 3.5 1.8 8.8 2.9 2.1 1 1 1 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|320100663|ref|YP_004176255.1| - 0.29 11.1 1.2 19 5.2 0.1 2.3 1 1 0 2 2 2 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|320100663|ref|YP_004176255.1| - 0.32 10.9 3.1 0.85 9.6 0.4 2.5 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HMG-CoA_red PF00368.18 gi|320100664|ref|YP_004176256.1| - 1.5e-106 356.5 6.4 1.7e-106 356.3 6.4 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Phasin_2 PF09361.10 gi|320100664|ref|YP_004176256.1| - 0.048 13.9 0.1 0.15 12.4 0.1 1.8 1 1 0 1 1 1 0 Phasin protein Peptidase_A8 PF01252.18 gi|320100664|ref|YP_004176256.1| - 0.098 12.9 0.1 0.21 11.8 0.1 1.5 1 0 0 1 1 1 0 Signal peptidase (SPase) II ABC_tran PF00005.27 gi|320100667|ref|YP_004176259.1| - 6.9e-20 72.0 0.0 9.3e-20 71.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100667|ref|YP_004176259.1| - 1.5e-13 51.3 0.1 1.2e-05 25.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100667|ref|YP_004176259.1| - 0.00011 21.8 0.0 0.14 11.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|320100667|ref|YP_004176259.1| - 0.0037 17.0 0.0 0.0063 16.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|320100667|ref|YP_004176259.1| - 0.0051 16.4 0.0 0.0083 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|320100667|ref|YP_004176259.1| - 0.0068 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|320100667|ref|YP_004176259.1| - 0.011 16.3 0.0 0.015 15.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|320100667|ref|YP_004176259.1| - 0.027 14.2 0.0 0.11 12.2 0.0 2.0 2 1 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|320100667|ref|YP_004176259.1| - 0.038 12.8 0.0 0.067 12.0 0.0 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_24 PF13479.6 gi|320100667|ref|YP_004176259.1| - 0.038 13.7 0.0 0.1 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|320100667|ref|YP_004176259.1| - 0.066 13.5 0.1 0.53 10.6 0.1 2.3 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|320100667|ref|YP_004176259.1| - 0.087 12.7 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|320100667|ref|YP_004176259.1| - 0.11 13.1 0.2 0.26 11.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|320100667|ref|YP_004176259.1| - 0.12 12.8 0.1 0.16 12.3 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|320100667|ref|YP_004176259.1| - 0.18 11.6 0.0 0.45 10.2 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_15 PF13175.6 gi|320100667|ref|YP_004176259.1| - 0.18 11.5 0.0 2.6 7.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Terminase_6 PF03237.15 gi|320100667|ref|YP_004176259.1| - 0.22 11.1 0.0 34 4.0 0.0 2.8 3 0 0 3 3 3 0 Terminase-like family SRP54 PF00448.22 gi|320100667|ref|YP_004176259.1| - 0.24 11.0 0.1 0.42 10.2 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|320100667|ref|YP_004176259.1| - 0.33 9.5 0.0 0.58 8.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain PKD PF00801.20 gi|320100671|ref|YP_004176263.1| - 0.64 9.9 4.8 1.5 8.7 4.8 1.6 1 0 0 1 1 1 0 PKD domain DUF996 PF06195.13 gi|320100672|ref|YP_004176264.1| - 6e-33 114.0 23.8 6e-33 114.0 23.8 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF973 PF06157.11 gi|320100672|ref|YP_004176264.1| - 0.0054 15.8 29.6 0.026 13.6 11.4 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF973) DUF1201 PF06716.11 gi|320100672|ref|YP_004176264.1| - 0.094 12.7 0.5 0.094 12.7 0.5 2.6 4 0 0 4 4 4 0 Protein of unknown function (DUF1201) Cyt_bd_oxida_II PF02322.15 gi|320100672|ref|YP_004176264.1| - 0.28 10.5 19.3 0.42 9.9 19.3 1.3 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II Adeno_E3B PF03376.14 gi|320100672|ref|YP_004176264.1| - 0.47 10.7 0.0 0.47 10.7 0.0 2.9 3 1 0 3 3 3 0 Adenovirus E3B protein DUF805 PF05656.14 gi|320100672|ref|YP_004176264.1| - 0.62 10.5 6.8 0.11 13.0 2.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF805) UPF0182 PF03699.13 gi|320100672|ref|YP_004176264.1| - 2.7 6.0 4.9 3.4 5.7 4.9 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) Colicin_V PF02674.16 gi|320100672|ref|YP_004176264.1| - 3.1 7.7 30.5 0.041 13.8 16.6 2.4 1 1 2 3 3 3 0 Colicin V production protein DUF2975 PF11188.8 gi|320100672|ref|YP_004176264.1| - 6.2 6.7 23.4 1.1 9.2 10.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) TrwB_AAD_bind PF10412.9 gi|320100673|ref|YP_004176265.1| - 1.8e-14 53.5 0.0 1.6e-06 27.3 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 gi|320100673|ref|YP_004176265.1| - 7.2e-14 52.4 0.0 1e-13 51.9 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain TraG-D_C PF12696.7 gi|320100673|ref|YP_004176265.1| - 1.7e-07 31.3 0.0 2.8e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.6 gi|320100673|ref|YP_004176265.1| - 6.8e-07 29.6 0.0 0.0006 20.1 0.0 2.8 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|320100673|ref|YP_004176265.1| - 0.00014 22.3 0.3 0.034 14.5 0.1 2.7 2 1 0 2 2 2 1 AAA ATPase domain DUF853 PF05872.12 gi|320100673|ref|YP_004176265.1| - 0.00031 19.5 0.1 0.00047 18.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) AAA_30 PF13604.6 gi|320100673|ref|YP_004176265.1| - 0.00039 20.2 0.1 0.046 13.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain T4SS-DNA_transf PF02534.14 gi|320100673|ref|YP_004176265.1| - 0.001 18.0 0.0 0.012 14.5 0.0 2.0 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer ABC_tran PF00005.27 gi|320100673|ref|YP_004176265.1| - 0.0035 17.8 0.0 0.007 16.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_10 PF12846.7 gi|320100673|ref|YP_004176265.1| - 0.0079 15.1 0.0 0.016 14.2 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|320100673|ref|YP_004176265.1| - 0.0086 15.4 0.0 0.08 12.3 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zeta_toxin PF06414.12 gi|320100673|ref|YP_004176265.1| - 0.06 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 gi|320100673|ref|YP_004176265.1| - 0.062 13.6 0.1 2.9 8.2 0.0 2.7 3 0 0 3 3 2 0 AAA domain NACHT PF05729.12 gi|320100673|ref|YP_004176265.1| - 0.08 12.9 0.2 0.19 11.7 0.2 1.6 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 gi|320100673|ref|YP_004176265.1| - 0.12 12.3 0.0 0.6 10.0 0.0 2.0 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea cobW PF02492.19 gi|320100673|ref|YP_004176265.1| - 0.15 11.6 0.1 0.3 10.6 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ResIII PF04851.15 gi|320100673|ref|YP_004176265.1| - 0.19 11.7 0.0 0.33 11.0 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit CbtA PF09490.10 gi|320100674|ref|YP_004176266.1| - 0.0054 16.5 5.2 0.006 16.4 5.2 1.0 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) CbiM PF01891.16 gi|320100674|ref|YP_004176266.1| - 0.016 15.1 2.5 0.021 14.7 2.5 1.1 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region AAA_10 PF12846.7 gi|320100675|ref|YP_004176267.1| - 1e-11 44.4 0.0 1.1e-06 27.9 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 gi|320100675|ref|YP_004176267.1| - 4e-08 33.6 0.0 7.2e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|320100675|ref|YP_004176267.1| - 2.1e-05 23.6 0.0 0.031 13.2 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain MeaB PF03308.16 gi|320100675|ref|YP_004176267.1| - 0.00077 18.5 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|320100675|ref|YP_004176267.1| - 0.00088 18.8 0.0 0.0013 18.2 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_22 PF13401.6 gi|320100675|ref|YP_004176267.1| - 0.001 19.3 0.0 0.44 10.8 0.0 2.9 3 0 0 3 3 3 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|320100675|ref|YP_004176267.1| - 0.0039 16.6 0.0 0.0092 15.4 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|320100675|ref|YP_004176267.1| - 0.03 14.7 0.1 0.18 12.2 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|320100675|ref|YP_004176267.1| - 0.043 14.3 0.0 0.087 13.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter FtsX PF02687.21 gi|320100677|ref|YP_004176269.1| - 0.00015 22.2 0.6 0.00015 22.2 0.6 2.7 3 1 0 3 3 3 1 FtsX-like permease family Trimer_CC PF08954.11 gi|320100677|ref|YP_004176269.1| - 0.00046 19.7 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 Trimerisation motif ABC_tran PF00005.27 gi|320100680|ref|YP_004176272.1| - 7.8e-29 100.9 0.0 9.7e-29 100.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_13 PF13166.6 gi|320100680|ref|YP_004176272.1| - 2.8e-06 26.3 0.0 0.025 13.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_21 PF13304.6 gi|320100680|ref|YP_004176272.1| - 1.2e-05 25.3 0.0 0.072 12.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100680|ref|YP_004176272.1| - 0.0013 18.3 0.0 0.52 9.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|320100680|ref|YP_004176272.1| - 0.0018 18.5 0.0 0.0036 17.5 0.0 1.5 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|320100680|ref|YP_004176272.1| - 0.019 14.7 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|320100680|ref|YP_004176272.1| - 0.028 14.3 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|320100680|ref|YP_004176272.1| - 0.072 13.4 0.4 0.54 10.5 0.4 2.1 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|320100680|ref|YP_004176272.1| - 0.077 10.5 0.5 0.1 10.1 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NB-ARC PF00931.22 gi|320100680|ref|YP_004176272.1| - 0.11 11.6 0.1 0.57 9.3 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain T2SSE PF00437.20 gi|320100682|ref|YP_004176274.1| - 1.1e-34 119.8 0.0 1.6e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein cobW PF02492.19 gi|320100682|ref|YP_004176274.1| - 0.00019 21.0 0.0 0.00055 19.6 0.0 1.7 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|320100682|ref|YP_004176274.1| - 0.00032 21.1 0.0 0.00057 20.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|320100682|ref|YP_004176274.1| - 0.00056 20.4 0.0 0.00096 19.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|320100682|ref|YP_004176274.1| - 0.0015 18.8 0.0 0.0046 17.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|320100682|ref|YP_004176274.1| - 0.0046 16.7 0.0 0.0095 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|320100682|ref|YP_004176274.1| - 0.0064 16.1 0.0 0.019 14.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|320100682|ref|YP_004176274.1| - 0.01 15.8 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|320100682|ref|YP_004176274.1| - 0.012 16.0 0.0 0.028 14.8 0.0 1.8 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|320100682|ref|YP_004176274.1| - 0.012 15.9 0.0 0.034 14.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|320100682|ref|YP_004176274.1| - 0.015 14.7 0.0 0.032 13.6 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_29 PF13555.6 gi|320100682|ref|YP_004176274.1| - 0.017 14.9 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|320100682|ref|YP_004176274.1| - 0.019 14.5 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|320100682|ref|YP_004176274.1| - 0.021 14.8 0.0 0.052 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_11 PF13086.6 gi|320100682|ref|YP_004176274.1| - 0.036 13.9 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|320100682|ref|YP_004176274.1| - 0.039 13.7 0.0 0.062 13.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.6 gi|320100682|ref|YP_004176274.1| - 0.043 14.0 0.0 0.073 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|320100682|ref|YP_004176274.1| - 0.043 14.4 0.0 0.084 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|320100682|ref|YP_004176274.1| - 0.06 13.1 0.0 0.093 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|320100682|ref|YP_004176274.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_23 PF13476.6 gi|320100682|ref|YP_004176274.1| - 0.086 13.3 0.0 0.13 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|320100682|ref|YP_004176274.1| - 0.093 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.22 gi|320100682|ref|YP_004176274.1| - 0.11 11.7 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF5388 PF17363.2 gi|320100687|ref|YP_004176279.1| - 0.012 15.8 0.5 0.02 15.1 0.5 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5388) GST_N_4 PF17172.4 gi|320100687|ref|YP_004176279.1| - 0.14 12.9 0.1 0.2 12.4 0.1 1.3 1 0 0 1 1 1 0 Glutathione S-transferase N-terminal domain Orn_Arg_deC_N PF02784.16 gi|320100688|ref|YP_004176280.1| - 2.6e-20 72.9 0.0 4.1e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HTH_Tnp_1_2 PF13022.6 gi|320100688|ref|YP_004176280.1| - 0.026 14.7 0.1 32 4.7 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix of insertion element transposase ThiD2 PF17792.1 gi|320100688|ref|YP_004176280.1| - 0.11 12.9 0.2 0.28 11.6 0.2 1.6 1 0 0 1 1 1 0 ThiD2 family Radical_SAM PF04055.21 gi|320100689|ref|YP_004176281.1| - 5.5e-16 59.4 0.0 1.6e-15 57.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily HypD PF01924.16 gi|320100690|ref|YP_004176282.1| - 1.6e-127 425.5 0.0 1.9e-127 425.2 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.6 gi|320100690|ref|YP_004176282.1| - 0.06 13.2 0.2 0.13 12.1 0.2 1.5 1 0 0 1 1 1 0 zf-RING of BARD1-type protein NTP_transf_3 PF12804.7 gi|320100691|ref|YP_004176283.1| - 6e-25 88.5 0.0 7.4e-25 88.2 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|320100691|ref|YP_004176283.1| - 0.00011 22.0 0.0 0.00018 21.4 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|320100691|ref|YP_004176283.1| - 0.0018 18.2 0.0 0.0037 17.2 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|320100691|ref|YP_004176283.1| - 0.044 13.4 0.0 0.059 12.9 0.0 1.1 1 0 0 1 1 1 0 Nucleotidyl transferase PhoU_div PF01865.16 gi|320100692|ref|YP_004176284.1| - 4.9e-30 104.5 4.0 5.8e-30 104.2 4.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|320100692|ref|YP_004176284.1| - 9.9e-05 22.7 5.1 0.00074 19.9 1.8 2.3 2 0 0 2 2 2 1 PhoU domain DrrA_P4M PF14860.6 gi|320100692|ref|YP_004176284.1| - 0.014 15.2 0.1 0.029 14.2 0.1 1.8 1 1 0 1 1 1 0 DrrA phosphatidylinositol 4-phosphate binding domain NPV_P10 PF05531.12 gi|320100692|ref|YP_004176284.1| - 0.027 14.9 0.2 8 7.0 0.0 3.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein ZapB PF06005.12 gi|320100692|ref|YP_004176284.1| - 0.03 14.8 1.4 0.86 10.1 0.0 2.6 3 0 0 3 3 3 0 Cell division protein ZapB Amidohydro_1 PF01979.20 gi|320100692|ref|YP_004176284.1| - 0.064 12.6 0.0 0.074 12.3 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase family DUF2999 PF11212.8 gi|320100692|ref|YP_004176284.1| - 0.077 13.3 0.1 14 6.1 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2999) OST-HTH PF12872.7 gi|320100692|ref|YP_004176284.1| - 0.12 12.3 0.1 0.49 10.3 0.0 2.2 2 0 0 2 2 2 0 OST-HTH/LOTUS domain FlaC_arch PF05377.11 gi|320100692|ref|YP_004176284.1| - 0.2 12.1 5.1 36 4.8 0.4 4.3 3 2 2 5 5 5 0 Flagella accessory protein C (FlaC) TrmB PF01978.19 gi|320100693|ref|YP_004176285.1| - 1.7e-05 24.6 1.0 5e-05 23.1 0.6 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|320100693|ref|YP_004176285.1| - 0.056 13.4 0.1 0.076 13.0 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF742 PF05331.11 gi|320100693|ref|YP_004176285.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) PaaX PF07848.12 gi|320100693|ref|YP_004176285.1| - 0.12 12.6 0.1 0.26 11.5 0.1 1.5 1 0 0 1 1 1 0 PaaX-like protein RHH_1 PF01402.21 gi|320100694|ref|YP_004176286.1| - 0.00024 20.9 0.2 0.00061 19.6 0.2 1.8 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family CopG_antitoxin PF12441.8 gi|320100694|ref|YP_004176286.1| - 0.055 14.0 0.0 0.079 13.5 0.0 1.3 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system DUF4065 PF13274.6 gi|320100694|ref|YP_004176286.1| - 0.11 13.4 0.1 0.15 13.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4065) DUF211 PF02680.14 gi|320100695|ref|YP_004176287.1| - 7.6e-32 109.3 6.0 8.2e-32 109.2 6.0 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.26 gi|320100695|ref|YP_004176287.1| - 0.036 14.5 1.5 0.53 10.8 1.4 2.1 1 1 0 1 1 1 0 Heavy-metal-associated domain Fasciclin PF02469.22 gi|320100695|ref|YP_004176287.1| - 0.23 11.7 1.0 0.28 11.4 1.0 1.1 1 0 0 1 1 1 0 Fasciclin domain ABC_tran PF00005.27 gi|320100697|ref|YP_004176289.1| - 7.8e-34 117.1 0.0 1.2e-33 116.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|320100697|ref|YP_004176289.1| - 5.8e-10 39.2 0.2 4e-08 33.3 0.1 2.9 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.6 gi|320100697|ref|YP_004176289.1| - 2.8e-06 27.4 0.5 0.029 14.2 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|320100697|ref|YP_004176289.1| - 0.00025 21.3 1.7 0.0039 17.5 1.7 2.1 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|320100697|ref|YP_004176289.1| - 0.0013 19.1 0.0 0.0023 18.3 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_23 PF13476.6 gi|320100697|ref|YP_004176289.1| - 0.0026 18.3 0.3 0.0052 17.3 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|320100697|ref|YP_004176289.1| - 0.0028 18.1 0.3 0.043 14.2 0.3 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|320100697|ref|YP_004176289.1| - 0.0051 16.6 0.0 0.095 12.4 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|320100697|ref|YP_004176289.1| - 0.0065 16.4 0.2 0.018 14.9 0.1 1.6 1 1 0 2 2 2 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|320100697|ref|YP_004176289.1| - 0.039 13.9 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|320100697|ref|YP_004176289.1| - 0.05 14.0 0.1 0.088 13.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain HSM3_N PF18795.1 gi|320100697|ref|YP_004176289.1| - 0.052 13.0 0.0 0.084 12.3 0.0 1.3 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain Rop PF01815.16 gi|320100697|ref|YP_004176289.1| - 0.17 11.8 0.1 0.31 11.0 0.1 1.3 1 0 0 1 1 1 0 Rop protein BPD_transp_1 PF00528.22 gi|320100698|ref|YP_004176290.1| - 2.4e-19 69.8 48.3 5e-12 45.9 23.7 5.2 2 2 2 5 5 5 2 Binding-protein-dependent transport system inner membrane component Sterol_MT_C PF08498.10 gi|320100698|ref|YP_004176290.1| - 0.017 15.4 0.0 0.056 13.8 0.0 1.9 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal SBP_bac_8 PF13416.6 gi|320100699|ref|YP_004176291.1| - 2.5e-17 63.6 0.7 2.5e-17 63.6 0.7 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|320100699|ref|YP_004176291.1| - 1e-16 61.1 0.2 1.8e-16 60.3 0.2 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|320100699|ref|YP_004176291.1| - 4.3e-09 36.8 3.1 1.9e-08 34.6 3.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SSP160 PF06933.11 gi|320100699|ref|YP_004176291.1| - 0.11 10.7 15.4 0.16 10.1 15.4 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Glucodextran_C PF09985.9 gi|320100700|ref|YP_004176292.1| - 7.1e-74 248.1 0.2 1.8e-73 246.7 0.2 1.7 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase ABC_transp_aux PF09822.9 gi|320100700|ref|YP_004176292.1| - 0.00068 19.2 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF2929 PF11151.8 gi|320100700|ref|YP_004176292.1| - 0.32 11.3 3.2 1.9 8.9 1.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2929) Metallophos PF00149.28 gi|320100701|ref|YP_004176293.1| - 1.5e-12 48.5 0.4 2.7e-12 47.6 0.4 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase RIFIN PF02009.16 gi|320100701|ref|YP_004176293.1| - 4.1e-05 23.6 6.6 5.7e-05 23.2 6.6 1.1 1 0 0 1 1 1 1 Rifin Metallophos_2 PF12850.7 gi|320100701|ref|YP_004176293.1| - 0.044 14.0 0.0 0.35 11.0 0.0 2.2 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain MG2 PF01835.19 gi|320100701|ref|YP_004176293.1| - 0.16 12.5 0.0 0.16 12.5 0.0 3.4 2 1 1 3 3 3 0 MG2 domain DUF5305 PF17231.2 gi|320100701|ref|YP_004176293.1| - 0.75 9.2 16.4 1.5 8.2 16.4 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5305) Stevor PF17410.2 gi|320100701|ref|YP_004176293.1| - 4.4 6.8 7.7 6.9 6.1 7.7 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF908 PF06012.12 gi|320100701|ref|YP_004176293.1| - 8.2 5.7 12.1 12 5.1 12.1 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF908) Hjc PF01870.18 gi|320100702|ref|YP_004176294.1| - 6.2e-28 96.6 0.1 7.8e-28 96.3 0.1 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) RecU PF03838.14 gi|320100702|ref|YP_004176294.1| - 7.8e-05 22.7 0.0 0.0001 22.4 0.0 1.1 1 0 0 1 1 1 1 Recombination protein U AHJR-like PF18743.1 gi|320100702|ref|YP_004176294.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 REase_AHJR-like T2SSE PF00437.20 gi|320100703|ref|YP_004176295.1| - 9.5e-11 41.3 0.0 4.5e-10 39.0 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|320100703|ref|YP_004176295.1| - 6.1e-05 23.1 0.0 0.025 14.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|320100703|ref|YP_004176295.1| - 0.00031 21.3 0.1 0.0018 18.8 0.0 2.3 3 0 0 3 3 2 1 AAA domain AAA PF00004.29 gi|320100703|ref|YP_004176295.1| - 0.0011 19.4 0.1 0.016 15.6 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|320100703|ref|YP_004176295.1| - 0.0025 18.2 0.0 0.005 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|320100703|ref|YP_004176295.1| - 0.0035 17.1 0.0 0.0063 16.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein RuvB_N PF05496.12 gi|320100703|ref|YP_004176295.1| - 0.0038 17.0 0.0 0.0094 15.7 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DnaB_C PF03796.15 gi|320100703|ref|YP_004176295.1| - 0.0038 16.6 0.0 0.0089 15.4 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|320100703|ref|YP_004176295.1| - 0.0043 16.6 0.0 0.01 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|320100703|ref|YP_004176295.1| - 0.0062 16.8 0.0 0.016 15.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.15 gi|320100703|ref|YP_004176295.1| - 0.0071 16.3 0.3 0.18 11.7 0.0 2.8 2 1 0 2 2 2 1 NTPase AAA_5 PF07728.14 gi|320100703|ref|YP_004176295.1| - 0.0094 16.0 0.0 0.021 14.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) TsaE PF02367.17 gi|320100703|ref|YP_004176295.1| - 0.0098 15.9 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|320100703|ref|YP_004176295.1| - 0.013 15.2 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|320100703|ref|YP_004176295.1| - 0.022 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_3 PF07726.11 gi|320100703|ref|YP_004176295.1| - 0.032 14.1 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|320100703|ref|YP_004176295.1| - 0.043 14.0 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|320100703|ref|YP_004176295.1| - 0.047 13.4 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|320100703|ref|YP_004176295.1| - 0.049 12.9 0.0 0.13 11.5 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin ATP_bind_1 PF03029.17 gi|320100703|ref|YP_004176295.1| - 0.055 13.2 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ResIII PF04851.15 gi|320100703|ref|YP_004176295.1| - 0.06 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|320100703|ref|YP_004176295.1| - 0.061 13.0 0.3 0.18 11.5 0.0 1.9 3 0 0 3 3 2 0 AAA domain AAA_19 PF13245.6 gi|320100703|ref|YP_004176295.1| - 0.093 13.1 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|320100703|ref|YP_004176295.1| - 0.093 13.0 0.0 0.29 11.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_17 PF13207.6 gi|320100703|ref|YP_004176295.1| - 0.096 13.1 0.1 0.97 9.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|320100703|ref|YP_004176295.1| - 0.11 12.9 0.0 0.25 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.18 gi|320100703|ref|YP_004176295.1| - 0.14 11.5 0.0 0.3 10.4 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sigma54_activ_2 PF14532.6 gi|320100703|ref|YP_004176295.1| - 0.15 12.1 0.0 0.4 10.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain Metallophos PF00149.28 gi|320100704|ref|YP_004176296.1| - 0.0036 17.8 0.9 0.012 16.1 0.9 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Mucin PF01456.17 gi|320100704|ref|YP_004176296.1| - 0.17 11.9 14.4 0.29 11.1 14.4 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein MGC-24 PF05283.11 gi|320100704|ref|YP_004176296.1| - 0.84 10.1 5.3 1.5 9.3 5.3 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin ParA PF10609.9 gi|320100705|ref|YP_004176297.1| - 0.00013 21.5 0.0 0.00027 20.5 0.0 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase cobW PF02492.19 gi|320100705|ref|YP_004176297.1| - 0.00038 20.1 0.0 0.0037 16.9 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|320100705|ref|YP_004176297.1| - 0.08 11.9 1.8 0.15 11.0 0.3 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 gi|320100705|ref|YP_004176297.1| - 0.088 12.9 1.1 0.16 12.0 0.5 1.8 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|320100705|ref|YP_004176297.1| - 0.1 12.4 0.0 0.29 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|320100705|ref|YP_004176297.1| - 0.13 11.5 0.0 0.24 10.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin PPDK_N PF01326.19 gi|320100706|ref|YP_004176298.1| - 4.1e-121 404.3 0.0 6.1e-121 403.7 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|320100706|ref|YP_004176298.1| - 2.8e-91 305.7 0.0 4.4e-91 305.0 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|320100706|ref|YP_004176298.1| - 4.3e-29 100.1 1.1 9.5e-29 98.9 1.1 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.21 gi|320100706|ref|YP_004176298.1| - 0.016 15.6 0.0 0.061 13.7 0.0 2.1 1 1 0 1 1 1 0 Radical SAM superfamily Epimerase_2 PF02350.19 gi|320100706|ref|YP_004176298.1| - 0.18 10.6 0.0 0.38 9.6 0.0 1.5 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase CPSase_L_D2 PF02786.17 gi|320100707|ref|YP_004176299.1| - 3.3e-38 131.3 0.0 6.3e-38 130.4 0.0 1.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|320100707|ref|YP_004176299.1| - 1.5e-23 83.5 0.0 4.1e-23 82.0 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|320100707|ref|YP_004176299.1| - 8.4e-21 74.1 0.0 1.6e-20 73.2 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|320100707|ref|YP_004176299.1| - 8.6e-10 38.5 0.0 1.7e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|320100707|ref|YP_004176299.1| - 7.8e-09 35.3 0.0 1.5e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|320100707|ref|YP_004176299.1| - 2.8e-05 24.0 0.0 5.7e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_ST PF14397.6 gi|320100707|ref|YP_004176299.1| - 0.00047 19.5 0.0 0.00085 18.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|320100707|ref|YP_004176299.1| - 0.00062 19.4 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|320100707|ref|YP_004176299.1| - 0.0022 18.1 0.0 0.0091 16.1 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|320100707|ref|YP_004176299.1| - 0.14 11.4 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 YheC/D like ATP-grasp NUC130_3NT PF08158.12 gi|320100707|ref|YP_004176299.1| - 0.31 11.4 1.5 21 5.5 0.0 2.6 2 0 0 2 2 2 0 NUC130/3NT domain Prok-JAB PF14464.6 gi|320100708|ref|YP_004176300.1| - 0.0027 17.5 0.0 0.0042 16.8 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Peptidase_M20 PF01546.28 gi|320100709|ref|YP_004176301.1| - 9.1e-39 133.3 0.1 1.2e-38 132.9 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|320100709|ref|YP_004176301.1| - 3.7e-19 68.7 0.0 7e-19 67.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Fer4_13 PF13370.6 gi|320100710|ref|YP_004176302.1| - 2.1e-20 73.0 2.7 2.6e-20 72.7 2.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|320100710|ref|YP_004176302.1| - 1.4e-15 57.8 2.5 1.6e-15 57.6 2.5 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|320100710|ref|YP_004176302.1| - 0.0058 16.4 5.5 0.051 13.4 1.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|320100710|ref|YP_004176302.1| - 0.0092 16.6 2.0 0.028 15.0 2.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|320100710|ref|YP_004176302.1| - 0.016 15.3 6.6 0.019 15.0 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|320100710|ref|YP_004176302.1| - 0.044 14.3 3.5 0.051 14.1 0.2 2.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|320100710|ref|YP_004176302.1| - 0.14 12.3 3.3 0.72 10.0 3.3 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Cation_efflux PF01545.21 gi|320100711|ref|YP_004176303.1| - 4.5e-14 52.6 7.2 6.3e-14 52.2 7.2 1.2 1 0 0 1 1 1 1 Cation efflux family L27 PF02828.16 gi|320100711|ref|YP_004176303.1| - 0.01 15.6 0.9 0.31 10.8 0.0 2.4 2 0 0 2 2 2 0 L27 domain Bax1-I PF01027.20 gi|320100711|ref|YP_004176303.1| - 0.029 14.2 7.7 0.041 13.7 7.7 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 MarC PF01914.17 gi|320100712|ref|YP_004176304.1| - 2.3e-44 151.2 17.1 2.9e-44 150.9 17.1 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Amidohydro_1 PF01979.20 gi|320100713|ref|YP_004176305.1| - 3.7e-26 92.3 0.0 4.5e-26 92.0 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|320100713|ref|YP_004176305.1| - 2.5e-14 53.6 0.1 4.4e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family tRNA-synt_1 PF00133.22 gi|320100714|ref|YP_004176306.1| - 2.2e-53 181.5 0.0 3.1e-52 177.7 0.0 2.5 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|320100714|ref|YP_004176306.1| - 5.5e-21 74.8 1.2 1.1e-09 37.5 0.1 4.0 4 0 0 4 4 4 4 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|320100714|ref|YP_004176306.1| - 5.2e-16 59.0 0.0 1.1e-15 58.0 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|320100714|ref|YP_004176306.1| - 1e-07 31.6 0.1 0.002 17.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|320100714|ref|YP_004176306.1| - 0.0027 16.7 0.0 0.0096 14.9 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) MFS_1 PF07690.16 gi|320100715|ref|YP_004176307.1| - 2.3e-24 86.0 48.9 1.6e-12 47.0 21.6 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily ATG22 PF11700.8 gi|320100715|ref|YP_004176307.1| - 0.013 14.1 11.0 0.017 13.8 0.2 3.4 2 2 1 3 3 3 0 Vacuole effluxer Atg22 like GFO_IDH_MocA PF01408.22 gi|320100716|ref|YP_004176308.1| - 2.7e-16 60.5 0.0 4.6e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|320100716|ref|YP_004176308.1| - 0.062 13.3 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain SBP_bac_1 PF01547.25 gi|320100717|ref|YP_004176309.1| - 7.6e-36 124.6 4.4 2.8e-35 122.8 4.4 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|320100717|ref|YP_004176309.1| - 1.2e-22 81.1 2.9 1.5e-22 80.7 2.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein VF530 PF09905.9 gi|320100717|ref|YP_004176309.1| - 0.092 12.9 0.0 0.3 11.3 0.0 1.9 1 0 0 1 1 1 0 DNA-binding protein VF530 DUF1310 PF07006.11 gi|320100717|ref|YP_004176309.1| - 0.2 11.6 0.0 0.44 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1310) BPD_transp_1 PF00528.22 gi|320100718|ref|YP_004176310.1| - 8e-12 45.3 32.1 5.7e-11 42.5 32.1 2.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|320100719|ref|YP_004176311.1| - 4.4e-23 82.0 17.8 4.4e-23 82.0 17.8 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|320100720|ref|YP_004176312.1| - 1.9e-33 115.9 0.0 2.9e-33 115.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100720|ref|YP_004176312.1| - 1.5e-10 41.4 0.0 5.3e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100720|ref|YP_004176312.1| - 1e-06 28.4 0.0 3.2e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|320100720|ref|YP_004176312.1| - 6.1e-06 26.7 0.1 2.3e-05 24.8 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|320100720|ref|YP_004176312.1| - 0.00039 20.2 0.0 0.00081 19.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|320100720|ref|YP_004176312.1| - 0.00073 20.0 1.0 0.012 16.0 1.0 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|320100720|ref|YP_004176312.1| - 0.0027 17.4 0.0 0.0058 16.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 gi|320100720|ref|YP_004176312.1| - 0.0033 17.3 0.0 0.0073 16.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 gi|320100720|ref|YP_004176312.1| - 0.006 16.9 0.0 0.011 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|320100720|ref|YP_004176312.1| - 0.0078 16.5 0.1 0.011 16.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|320100720|ref|YP_004176312.1| - 0.012 15.8 0.1 0.12 12.6 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.19 gi|320100720|ref|YP_004176312.1| - 0.015 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|320100720|ref|YP_004176312.1| - 0.016 14.8 0.0 0.045 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|320100720|ref|YP_004176312.1| - 0.017 15.6 0.0 0.074 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|320100720|ref|YP_004176312.1| - 0.019 15.4 0.0 0.043 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|320100720|ref|YP_004176312.1| - 0.021 14.7 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 gi|320100720|ref|YP_004176312.1| - 0.023 14.7 0.2 0.14 12.2 0.0 2.3 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|320100720|ref|YP_004176312.1| - 0.027 13.5 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_11 PF13086.6 gi|320100720|ref|YP_004176312.1| - 0.03 14.1 0.0 0.041 13.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|320100720|ref|YP_004176312.1| - 0.032 14.5 0.1 0.069 13.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|320100720|ref|YP_004176312.1| - 0.033 14.3 0.0 0.074 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|320100720|ref|YP_004176312.1| - 0.063 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ATPase_2 PF01637.18 gi|320100720|ref|YP_004176312.1| - 0.064 13.2 0.1 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|320100720|ref|YP_004176312.1| - 0.078 13.0 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|320100720|ref|YP_004176312.1| - 0.092 12.5 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|320100720|ref|YP_004176312.1| - 0.11 12.5 0.1 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 NTPase AAA_24 PF13479.6 gi|320100720|ref|YP_004176312.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|320100720|ref|YP_004176312.1| - 0.11 11.8 0.0 0.5 9.7 0.0 1.8 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain TOBE_2 PF08402.10 gi|320100720|ref|YP_004176312.1| - 0.13 12.5 0.0 0.37 11.0 0.0 1.8 1 0 0 1 1 1 0 TOBE domain AAA_17 PF13207.6 gi|320100720|ref|YP_004176312.1| - 0.16 12.4 0.3 0.45 10.9 0.1 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|320100720|ref|YP_004176312.1| - 0.16 11.9 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain T6SS_TssF PF05947.12 gi|320100720|ref|YP_004176312.1| - 0.17 10.4 0.0 1.1 7.6 0.1 1.8 2 0 0 2 2 2 0 Type VI secretion system, TssF AAA_15 PF13175.6 gi|320100720|ref|YP_004176312.1| - 0.21 11.3 0.0 0.45 10.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|320100721|ref|YP_004176313.1| - 5.6e-29 101.4 0.0 8.4e-29 100.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|320100721|ref|YP_004176313.1| - 7.9e-07 29.3 0.0 2.2e-06 27.9 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|320100721|ref|YP_004176313.1| - 1.2e-06 28.5 0.0 0.00076 19.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 gi|320100721|ref|YP_004176313.1| - 2.9e-06 28.0 0.2 1.4e-05 25.8 0.1 2.3 3 0 0 3 3 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|320100721|ref|YP_004176313.1| - 2.7e-05 24.2 0.0 7.8e-05 22.8 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_23 PF13476.6 gi|320100721|ref|YP_004176313.1| - 0.00068 20.2 0.3 0.0014 19.2 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|320100721|ref|YP_004176313.1| - 0.002 18.6 0.0 0.0029 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|320100721|ref|YP_004176313.1| - 0.004 16.6 0.1 1 8.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|320100721|ref|YP_004176313.1| - 0.0079 16.1 0.0 0.0098 15.8 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|320100721|ref|YP_004176313.1| - 0.011 15.6 0.0 0.028 14.3 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|320100721|ref|YP_004176313.1| - 0.017 15.1 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain TOBE_3 PF12857.7 gi|320100721|ref|YP_004176313.1| - 0.017 15.1 0.0 0.045 13.7 0.0 1.7 1 0 0 1 1 1 0 TOBE-like domain AAA_25 PF13481.6 gi|320100721|ref|YP_004176313.1| - 0.026 14.1 0.1 0.25 10.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|320100721|ref|YP_004176313.1| - 0.027 14.7 0.1 0.048 13.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|320100721|ref|YP_004176313.1| - 0.037 14.5 0.0 0.093 13.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|320100721|ref|YP_004176313.1| - 0.049 13.5 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.6 gi|320100721|ref|YP_004176313.1| - 0.05 13.4 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|320100721|ref|YP_004176313.1| - 0.052 13.8 0.1 0.11 12.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|320100721|ref|YP_004176313.1| - 0.062 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|320100721|ref|YP_004176313.1| - 0.081 12.6 0.0 0.26 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|320100721|ref|YP_004176313.1| - 0.18 10.9 0.0 0.33 10.1 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain DUF2929 PF11151.8 gi|320100722|ref|YP_004176314.1| - 0.092 13.0 3.4 0.085 13.2 0.8 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF2929) DUF3784 PF12650.7 gi|320100722|ref|YP_004176314.1| - 0.17 12.1 0.2 0.17 12.1 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) DUF3270 PF11674.8 gi|320100722|ref|YP_004176314.1| - 0.52 10.5 2.3 0.94 9.7 2.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3270) ABC2_membrane_2 PF12679.7 gi|320100723|ref|YP_004176315.1| - 9.2e-16 58.0 8.5 1.6e-15 57.2 8.5 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|320100723|ref|YP_004176315.1| - 1.7e-05 24.1 8.3 1.7e-05 24.1 8.3 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|320100723|ref|YP_004176315.1| - 2 7.9 15.6 0.19 11.2 10.5 1.8 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|320100724|ref|YP_004176316.1| - 1.8e-22 80.3 0.0 2.9e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100724|ref|YP_004176316.1| - 8.2e-09 35.7 0.1 6.7e-05 22.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MeaB PF03308.16 gi|320100724|ref|YP_004176316.1| - 0.038 13.0 0.2 0.068 12.1 0.2 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Cupin_2 PF07883.11 gi|320100724|ref|YP_004176316.1| - 0.049 13.4 0.1 0.14 11.8 0.1 1.7 1 0 0 1 1 1 0 Cupin domain AAA_23 PF13476.6 gi|320100724|ref|YP_004176316.1| - 0.068 13.7 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|320100724|ref|YP_004176316.1| - 0.083 12.6 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|320100724|ref|YP_004176316.1| - 0.14 11.8 0.1 0.25 11.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Macro PF01661.21 gi|320100725|ref|YP_004176317.1| - 6.4e-28 97.2 0.1 8.6e-28 96.7 0.1 1.2 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.6 gi|320100725|ref|YP_004176317.1| - 8.6e-06 25.3 1.1 0.00051 19.5 1.1 2.6 1 1 0 1 1 1 1 Macro-like domain Amidohydro_3 PF07969.11 gi|320100726|ref|YP_004176318.1| - 8.8e-110 368.4 0.2 1e-109 368.2 0.2 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|320100726|ref|YP_004176318.1| - 4.2e-15 55.9 0.0 1.1e-08 34.8 0.0 3.2 3 0 0 3 3 3 3 Amidohydrolase family ThiS PF02597.20 gi|320100727|ref|YP_004176319.1| - 8.6e-13 48.7 0.0 9.3e-13 48.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|320100727|ref|YP_004176319.1| - 4.4e-05 23.2 0.4 0.00015 21.5 0.4 2.0 1 1 0 1 1 1 1 Mut7-C ubiquitin TGS PF02824.21 gi|320100727|ref|YP_004176319.1| - 0.004 17.2 0.4 0.01 15.9 0.1 1.7 2 0 0 2 2 2 1 TGS domain Fer2_2 PF01799.20 gi|320100728|ref|YP_004176320.1| - 2e-28 98.2 0.1 2e-28 98.2 0.1 1.5 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|320100728|ref|YP_004176320.1| - 1.6e-07 31.2 7.1 6.3e-07 29.3 7.1 2.3 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|320100728|ref|YP_004176320.1| - 1.1e-05 25.4 0.3 2.1e-05 24.5 0.3 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|320100728|ref|YP_004176320.1| - 0.0081 16.2 1.4 0.28 11.2 1.4 2.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 gi|320100729|ref|YP_004176321.1| - 2e-54 183.9 0.0 3.2e-54 183.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|320100729|ref|YP_004176321.1| - 3.2e-21 75.4 0.2 6.7e-21 74.4 0.2 1.5 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.18 gi|320100730|ref|YP_004176322.1| - 3.6e-137 458.1 0.0 5.2e-137 457.6 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|320100730|ref|YP_004176322.1| - 3.5e-18 66.0 0.0 7.9e-18 64.8 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 gi|320100731|ref|YP_004176323.1| - 1.2e-21 76.5 0.0 1.2e-21 76.5 0.0 1.6 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|320100731|ref|YP_004176323.1| - 1.9e-06 27.7 2.4 2.3e-06 27.5 0.1 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|320100731|ref|YP_004176323.1| - 4.8e-06 26.6 0.0 7.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|320100731|ref|YP_004176323.1| - 0.016 15.2 1.9 0.093 12.8 1.9 2.2 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 gi|320100732|ref|YP_004176324.1| - 6.1e-55 185.6 0.0 8.5e-55 185.1 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|320100732|ref|YP_004176324.1| - 9e-27 93.3 0.0 1.5e-26 92.5 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.18 gi|320100733|ref|YP_004176325.1| - 2.7e-176 587.3 1.1 3.3e-176 587.0 1.1 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|320100733|ref|YP_004176325.1| - 1.8e-19 70.1 0.0 3.9e-19 69.0 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amidohydro_1 PF01979.20 gi|320100734|ref|YP_004176326.1| - 1.5e-22 80.4 0.0 2.3e-22 79.8 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|320100734|ref|YP_004176326.1| - 8.2e-12 45.3 1.2 3e-05 23.7 0.3 2.6 1 1 1 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.20 gi|320100734|ref|YP_004176326.1| - 0.0031 17.8 0.9 0.0049 17.2 0.1 1.8 2 0 0 2 2 2 1 Urease alpha-subunit, N-terminal domain OTCace_N PF02729.21 gi|320100735|ref|YP_004176327.1| - 9.5e-40 136.0 0.0 1.4e-39 135.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|320100735|ref|YP_004176327.1| - 6e-25 88.2 0.0 9.4e-25 87.5 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF716 PF04819.12 gi|320100736|ref|YP_004176328.1| - 0.018 14.7 0.6 0.018 14.7 0.6 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF716) ABC2_membrane_2 PF12679.7 gi|320100736|ref|YP_004176328.1| - 4 6.6 13.5 9.2 5.4 13.5 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein YfdX PF10938.8 gi|320100737|ref|YP_004176329.1| - 0.0017 18.3 0.1 0.013 15.5 0.1 2.2 2 0 0 2 2 2 1 YfdX protein TPR_19 PF14559.6 gi|320100737|ref|YP_004176329.1| - 0.15 12.6 0.8 6.6 7.3 0.1 3.3 3 1 0 3 3 3 0 Tetratricopeptide repeat DZR PF12773.7 gi|320100737|ref|YP_004176329.1| - 0.17 11.9 1.0 0.32 11.0 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|320100737|ref|YP_004176329.1| - 0.19 11.5 3.6 0.77 9.6 3.6 1.9 1 1 0 1 1 1 0 zinc-ribbon domain TEA PF01285.18 gi|320100737|ref|YP_004176329.1| - 0.19 11.8 0.1 0.58 10.3 0.0 1.8 2 0 0 2 2 2 0 TEA/ATTS domain zf-ribbon_3 PF13248.6 gi|320100737|ref|YP_004176329.1| - 0.24 10.9 1.9 7.7 6.1 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TPR_2 PF07719.17 gi|320100738|ref|YP_004176330.1| - 0.0094 16.0 7.3 0.074 13.2 0.3 4.7 4 1 0 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|320100738|ref|YP_004176330.1| - 0.013 15.7 0.4 0.013 15.7 0.4 4.0 4 1 0 4 4 4 0 Tetratricopeptide repeat MIT PF04212.18 gi|320100738|ref|YP_004176330.1| - 0.044 13.9 7.6 0.22 11.6 0.1 3.7 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain TPR_8 PF13181.6 gi|320100738|ref|YP_004176330.1| - 0.058 13.6 4.1 1.1 9.6 0.1 4.4 4 1 0 4 4 4 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|320100738|ref|YP_004176330.1| - 0.067 12.9 0.4 0.73 9.6 0.0 3.1 3 1 0 3 3 3 0 TPR repeat Fe-ADH_2 PF13685.6 gi|320100738|ref|YP_004176330.1| - 0.14 11.8 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase TPR_1 PF00515.28 gi|320100738|ref|YP_004176330.1| - 0.21 11.5 0.2 0.21 11.5 0.2 3.4 5 0 0 5 5 5 0 Tetratricopeptide repeat TetR_C_14 PF17754.1 gi|320100738|ref|YP_004176330.1| - 0.22 11.5 2.1 0.91 9.5 0.0 2.6 3 0 0 3 3 3 0 MftR C-terminal domain Band_7_1 PF13421.6 gi|320100739|ref|YP_004176331.1| - 3.2e-34 118.5 0.0 5e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.25 gi|320100739|ref|YP_004176331.1| - 9.9e-13 48.5 1.1 1e-12 48.5 0.1 1.5 2 0 0 2 2 2 1 SPFH domain / Band 7 family SHOCT PF09851.9 gi|320100739|ref|YP_004176331.1| - 7.6e-08 31.8 7.5 7.6e-08 31.8 7.5 1.9 2 0 0 2 2 2 1 Short C-terminal domain GvpG PF05120.12 gi|320100739|ref|YP_004176331.1| - 0.009 16.0 2.5 0.02 14.9 1.6 2.0 2 0 0 2 2 2 1 Gas vesicle protein G DMAP_binding PF06464.11 gi|320100739|ref|YP_004176331.1| - 0.012 16.4 4.6 0.012 16.4 4.6 1.5 1 1 0 1 1 1 0 DMAP1-binding Domain SecD-TM1 PF13721.6 gi|320100739|ref|YP_004176331.1| - 0.14 12.6 0.1 1.5 9.4 0.1 2.2 2 0 0 2 2 2 0 SecD export protein N-terminal TM region Aminotran_3 PF00202.21 gi|320100741|ref|YP_004176333.1| - 5.7e-95 318.3 0.0 7e-95 318.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Transp_cyt_pur PF02133.15 gi|320100742|ref|YP_004176334.1| - 5.4e-31 107.8 32.0 8.4e-31 107.2 32.0 1.3 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin AIRS_C PF02769.22 gi|320100743|ref|YP_004176335.1| - 5.7e-19 68.8 0.9 8.5e-19 68.2 0.9 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|320100743|ref|YP_004176335.1| - 1.1e-10 42.0 0.1 3.2e-10 40.5 0.1 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Phos_pyr_kin PF08543.12 gi|320100744|ref|YP_004176336.1| - 1e-97 326.4 0.3 1.3e-97 326.0 0.3 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|320100744|ref|YP_004176336.1| - 1.5e-55 187.3 2.0 2.5e-55 186.6 0.1 2.2 2 1 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|320100744|ref|YP_004176336.1| - 2.9e-11 43.2 0.1 6.8e-11 42.0 0.1 1.5 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|320100744|ref|YP_004176336.1| - 0.022 14.3 1.3 0.036 13.5 1.3 1.4 1 1 0 1 1 1 0 Carbohydrate kinase BioY PF02632.14 gi|320100745|ref|YP_004176337.1| - 1.2e-28 99.9 21.9 1.2e-28 99.9 21.9 1.9 2 0 0 2 2 2 1 BioY family Flavin_Reduct PF01613.18 gi|320100746|ref|YP_004176338.1| - 2.3e-22 79.7 0.0 2.6e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain AA_permease_2 PF13520.6 gi|320100747|ref|YP_004176339.1| - 2.2e-21 76.2 48.9 3.3e-21 75.6 48.9 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|320100747|ref|YP_004176339.1| - 1.2e-13 50.6 39.0 1.9e-13 49.9 39.0 1.3 1 0 0 1 1 1 1 Amino acid permease Metallophos_3 PF14582.6 gi|320100748|ref|YP_004176340.1| - 1.3e-08 34.5 2.7 9.5e-05 21.8 0.7 3.3 3 1 0 3 3 3 2 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.7 gi|320100748|ref|YP_004176340.1| - 3.1e-07 30.7 0.1 6.4e-05 23.2 0.1 3.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|320100748|ref|YP_004176340.1| - 7.8e-05 23.3 0.0 0.00045 20.8 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Clat_adaptor_s PF01217.20 gi|320100749|ref|YP_004176341.1| - 0.098 12.6 0.0 0.28 11.1 0.0 1.7 2 0 0 2 2 2 0 Clathrin adaptor complex small chain SBP_bac_5 PF00496.22 gi|320100750|ref|YP_004176342.1| - 4.1e-97 325.5 0.7 5e-97 325.2 0.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.12 gi|320100750|ref|YP_004176342.1| - 0.056 13.0 0.1 3.2 7.2 0.1 2.4 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.22 gi|320100751|ref|YP_004176343.1| - 2.1e-41 141.7 12.6 2.1e-41 141.7 12.6 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|320100752|ref|YP_004176344.1| - 3.1e-22 79.2 9.8 3.1e-22 79.2 9.8 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|320100752|ref|YP_004176344.1| - 1.2e-05 25.2 3.5 1.2e-05 25.2 3.5 3.5 4 0 0 4 4 4 2 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|320100753|ref|YP_004176345.1| - 2.9e-30 105.6 0.0 3.8e-30 105.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|320100753|ref|YP_004176345.1| - 8.7e-21 74.2 0.1 1.4e-20 73.5 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|320100753|ref|YP_004176345.1| - 7.7e-06 25.5 0.3 5.6e-05 22.7 0.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|320100753|ref|YP_004176345.1| - 8.3e-06 25.8 1.6 0.00045 20.1 0.1 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|320100753|ref|YP_004176345.1| - 3.1e-05 23.6 0.0 0.00026 20.7 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|320100753|ref|YP_004176345.1| - 0.00071 19.4 0.3 0.19 11.4 0.1 2.1 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|320100753|ref|YP_004176345.1| - 0.0045 16.2 0.0 0.0093 15.2 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain ABC_ATPase PF09818.9 gi|320100753|ref|YP_004176345.1| - 0.018 13.9 0.3 0.63 8.8 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|320100753|ref|YP_004176345.1| - 0.018 15.4 0.1 0.027 14.9 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|320100753|ref|YP_004176345.1| - 0.034 13.2 0.1 0.29 10.2 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.12 gi|320100753|ref|YP_004176345.1| - 0.051 13.5 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|320100753|ref|YP_004176345.1| - 0.077 12.4 0.0 0.68 9.3 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|320100753|ref|YP_004176345.1| - 0.1 12.5 0.0 0.29 11.1 0.0 1.7 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.6 gi|320100753|ref|YP_004176345.1| - 0.1 12.8 0.0 0.31 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF4941 PF16299.5 gi|320100753|ref|YP_004176345.1| - 0.11 11.8 0.1 1.7 7.9 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4941) AAA_15 PF13175.6 gi|320100753|ref|YP_004176345.1| - 0.12 12.0 0.1 2.6 7.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|320100753|ref|YP_004176345.1| - 0.15 11.9 0.1 0.27 11.1 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|320100754|ref|YP_004176346.1| - 2.6e-32 112.2 0.0 3.5e-32 111.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|320100754|ref|YP_004176346.1| - 1.7e-20 73.3 0.1 2.9e-20 72.6 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|320100754|ref|YP_004176346.1| - 1e-05 25.5 0.5 0.0066 16.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|320100754|ref|YP_004176346.1| - 0.0026 18.1 1.2 0.05 13.9 1.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|320100754|ref|YP_004176346.1| - 0.016 14.9 0.1 0.029 14.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|320100754|ref|YP_004176346.1| - 0.053 13.9 0.7 0.11 12.9 0.7 1.4 1 1 0 1 1 1 0 AAA ATPase domain DLIC PF05783.11 gi|320100754|ref|YP_004176346.1| - 0.15 10.9 0.0 0.2 10.4 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ATPase PF06745.13 gi|320100754|ref|YP_004176346.1| - 0.18 11.1 0.7 0.56 9.5 0.1 1.9 2 0 0 2 2 2 0 KaiC IFT81_CH PF18383.1 gi|320100754|ref|YP_004176346.1| - 0.19 12.0 0.0 0.34 11.2 0.0 1.4 1 0 0 1 1 1 0 Intraflagellar transport 81 calponin homology domain Pribosyltran PF00156.27 gi|320100755|ref|YP_004176347.1| - 1.3e-11 44.2 0.0 2.4e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|320100755|ref|YP_004176347.1| - 0.0036 16.8 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|320100755|ref|YP_004176347.1| - 0.069 12.6 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase AbiEi_4 PF13338.6 gi|320100755|ref|YP_004176347.1| - 0.36 11.0 1.9 18 5.6 0.0 3.6 4 0 0 4 4 4 0 Transcriptional regulator, AbiEi antitoxin Fer4_15 PF13459.6 gi|320100757|ref|YP_004176349.1| - 4.2e-13 49.8 1.3 4.9e-13 49.6 1.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|320100757|ref|YP_004176349.1| - 7.7e-12 45.6 1.1 1e-11 45.2 1.1 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|320100757|ref|YP_004176349.1| - 0.74 9.7 6.2 6.3 6.8 0.2 2.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|320100757|ref|YP_004176349.1| - 0.87 9.8 6.1 1.1 9.4 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF202 PF02656.15 gi|320100758|ref|YP_004176350.1| - 0.1 13.0 5.6 0.36 11.3 5.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Oxidored_q2 PF00420.24 gi|320100758|ref|YP_004176350.1| - 0.98 9.1 6.2 2.5 7.8 6.2 1.7 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MHYT PF03707.16 gi|320100759|ref|YP_004176351.1| - 0.0016 18.5 0.5 0.0047 17.1 0.2 1.9 2 0 0 2 2 2 1 Bacterial signalling protein N terminal repeat DUF4013 PF13197.6 gi|320100759|ref|YP_004176351.1| - 0.082 12.8 0.6 0.11 12.4 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) BcsB PF03170.13 gi|320100759|ref|YP_004176351.1| - 0.21 9.9 0.0 0.22 9.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial cellulose synthase subunit Nitroreductase PF00881.24 gi|320100760|ref|YP_004176352.1| - 1.6e-23 83.6 0.0 1.9e-23 83.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|320100760|ref|YP_004176352.1| - 0.18 11.4 0.0 6.1 6.4 0.0 2.1 2 0 0 2 2 2 0 Putative TM nitroreductase DHO_dh PF01180.21 gi|320100761|ref|YP_004176353.1| - 6.2e-52 176.6 0.0 7.1e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|320100761|ref|YP_004176353.1| - 3e-07 29.9 0.1 1.1e-06 27.9 0.1 1.7 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|320100761|ref|YP_004176353.1| - 0.0018 17.8 2.7 0.0026 17.3 0.1 2.3 3 0 0 3 3 3 1 Histidine biosynthesis protein DOCK_N PF16172.5 gi|320100761|ref|YP_004176353.1| - 0.24 10.3 0.0 0.32 9.8 0.0 1.1 1 0 0 1 1 1 0 DOCK N-terminus IMPDH PF00478.25 gi|320100761|ref|YP_004176353.1| - 0.55 9.2 3.0 1.4 7.8 0.2 2.5 2 1 1 3 3 3 0 IMP dehydrogenase / GMP reductase domain DHODB_Fe-S_bind PF10418.9 gi|320100762|ref|YP_004176354.1| - 1.2e-09 37.8 4.2 1.2e-09 37.8 4.2 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|320100762|ref|YP_004176354.1| - 0.0013 19.3 0.0 0.0024 18.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.12 gi|320100762|ref|YP_004176354.1| - 0.11 12.7 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Ferric reductase NAD binding domain Pribosyltran PF00156.27 gi|320100763|ref|YP_004176355.1| - 4.7e-18 65.2 0.4 6.5e-18 64.8 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|320100763|ref|YP_004176355.1| - 0.02 14.3 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase OMPdecase PF00215.24 gi|320100764|ref|YP_004176356.1| - 5.6e-29 101.3 0.0 6.9e-29 101.0 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pribosyltran PF00156.27 gi|320100765|ref|YP_004176357.1| - 1.9e-23 82.7 0.0 3e-23 82.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|320100765|ref|YP_004176357.1| - 0.033 14.2 0.0 0.05 13.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|320100765|ref|YP_004176357.1| - 0.034 13.6 0.2 0.046 13.1 0.2 1.4 1 1 0 1 1 1 0 Uracil phosphoribosyltransferase TAFII28 PF04719.14 gi|320100765|ref|YP_004176357.1| - 0.092 12.9 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 hTAFII28-like protein conserved region GMP_synt_C PF00958.22 gi|320100766|ref|YP_004176358.1| - 6.6e-33 112.6 0.1 2.1e-32 111.0 0.0 1.9 2 0 0 2 2 2 1 GMP synthase C terminal domain GATase PF00117.28 gi|320100766|ref|YP_004176358.1| - 8.4e-28 97.4 0.0 1.3e-27 96.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I NAD_synthase PF02540.17 gi|320100766|ref|YP_004176358.1| - 2.6e-10 39.8 0.0 6.4e-05 22.2 0.0 2.4 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.13 gi|320100766|ref|YP_004176358.1| - 3.7e-10 39.9 0.1 1.2e-09 38.2 0.1 1.9 1 1 0 1 1 1 1 Peptidase C26 ATP_bind_3 PF01171.20 gi|320100766|ref|YP_004176358.1| - 0.0028 17.4 0.0 0.0095 15.7 0.0 1.8 1 1 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|320100766|ref|YP_004176358.1| - 0.023 14.2 0.0 0.15 11.5 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC HTH_Tnp_ISL3 PF13542.6 gi|320100766|ref|YP_004176358.1| - 0.18 11.2 0.2 9.9 5.7 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 PALP PF00291.25 gi|320100767|ref|YP_004176359.1| - 2.7e-13 50.0 0.1 4.9e-06 26.2 0.1 3.1 1 1 1 2 2 2 2 Pyridoxal-phosphate dependent enzyme TrmB PF01978.19 gi|320100767|ref|YP_004176359.1| - 0.0083 16.0 0.1 0.029 14.3 0.1 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|320100767|ref|YP_004176359.1| - 0.023 14.6 0.1 0.057 13.4 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|320100767|ref|YP_004176359.1| - 0.1 12.6 0.1 0.31 11.0 0.0 1.9 2 0 0 2 2 2 0 HTH domain SNO PF01174.19 gi|320100768|ref|YP_004176360.1| - 4.2e-49 167.0 0.0 4.6e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|320100768|ref|YP_004176360.1| - 1.6e-11 44.2 0.0 2.2e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|320100768|ref|YP_004176360.1| - 5.4e-07 29.6 0.0 7.5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_S51 PF03575.17 gi|320100768|ref|YP_004176360.1| - 0.00023 20.9 0.0 0.00029 20.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|320100768|ref|YP_004176360.1| - 0.00028 20.7 0.1 0.0023 17.7 0.1 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SOR_SNZ PF01680.17 gi|320100769|ref|YP_004176361.1| - 8.7e-92 306.6 0.3 1.2e-91 306.1 0.1 1.3 2 0 0 2 2 2 1 SOR/SNZ family ThiG PF05690.14 gi|320100769|ref|YP_004176361.1| - 2.9e-06 26.8 1.9 9.2e-06 25.1 0.1 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|320100769|ref|YP_004176361.1| - 0.002 17.3 0.0 0.49 9.4 0.0 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|320100769|ref|YP_004176361.1| - 0.002 17.6 0.2 2.1 7.7 0.0 2.9 2 1 1 3 3 3 2 Histidine biosynthesis protein NMO PF03060.15 gi|320100769|ref|YP_004176361.1| - 0.0029 17.0 0.2 0.0059 16.0 0.0 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase OMPdecase PF00215.24 gi|320100769|ref|YP_004176361.1| - 0.026 14.1 0.0 1.4 8.5 0.0 2.2 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|320100769|ref|YP_004176361.1| - 0.028 13.6 0.3 1.3 8.2 0.0 2.8 2 1 2 4 4 4 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|320100769|ref|YP_004176361.1| - 0.086 12.0 0.0 1.3 8.2 0.0 2.4 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase TetR_C_27 PF17935.1 gi|320100769|ref|YP_004176361.1| - 0.1 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Trp_syntA PF00290.20 gi|320100769|ref|YP_004176361.1| - 0.11 11.3 0.0 0.23 10.3 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain MS_channel PF00924.18 gi|320100771|ref|YP_004176363.1| - 2.4e-48 164.4 0.9 2.4e-48 164.4 0.9 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|320100771|ref|YP_004176363.1| - 0.051 13.6 3.0 0.6 10.1 2.5 2.8 2 0 0 2 2 2 0 Conserved TM helix DUF432 PF04254.13 gi|320100772|ref|YP_004176364.1| - 9.3e-28 96.9 0.0 1.2e-27 96.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) ThiI PF02568.14 gi|320100773|ref|YP_004176365.1| - 1e-50 172.1 0.0 1e-49 168.8 0.0 2.0 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|320100773|ref|YP_004176365.1| - 2.2e-22 79.7 2.0 4.3e-22 78.8 0.8 1.9 2 0 0 2 2 2 1 THUMP domain Rhodanese PF00581.20 gi|320100773|ref|YP_004176365.1| - 2.8e-08 34.2 0.0 2.8e-07 31.0 0.0 2.6 2 1 0 2 2 2 1 Rhodanese-like domain QueC PF06508.13 gi|320100773|ref|YP_004176365.1| - 5.1e-06 26.1 0.0 0.00049 19.7 0.0 2.4 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|320100773|ref|YP_004176365.1| - 0.009 15.5 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 1 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|320100773|ref|YP_004176365.1| - 0.034 12.9 0.0 0.052 12.3 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase LytR_C PF13399.6 gi|320100773|ref|YP_004176365.1| - 1.9 9.5 4.0 5.1 8.1 0.1 3.2 4 0 0 4 4 4 0 LytR cell envelope-related transcriptional attenuator AAA PF00004.29 gi|320100774|ref|YP_004176366.1| - 1.5e-15 57.8 0.0 2.9e-15 56.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|320100774|ref|YP_004176366.1| - 4.6e-08 33.0 0.0 8.9e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|320100774|ref|YP_004176366.1| - 3.8e-07 30.2 0.1 5.7e-06 26.4 0.0 2.5 2 1 1 3 3 3 1 Rad17 P-loop domain RFC1 PF08519.12 gi|320100774|ref|YP_004176366.1| - 2.1e-06 28.0 0.0 4.2e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_16 PF13191.6 gi|320100774|ref|YP_004176366.1| - 3.5e-06 27.5 0.3 1.7e-05 25.2 0.1 2.4 2 1 0 2 2 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|320100774|ref|YP_004176366.1| - 7e-06 26.1 0.0 2.3e-05 24.4 0.0 2.0 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|320100774|ref|YP_004176366.1| - 5.6e-05 23.2 0.0 0.00011 22.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|320100774|ref|YP_004176366.1| - 8e-05 21.9 0.0 0.00016 21.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DNA_pol3_delta PF06144.13 gi|320100774|ref|YP_004176366.1| - 0.00023 21.0 0.0 0.00043 20.1 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.6 gi|320100774|ref|YP_004176366.1| - 0.00024 21.4 0.4 0.012 15.9 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|320100774|ref|YP_004176366.1| - 0.00041 20.6 0.0 0.0012 19.1 0.0 1.8 1 0 0 1 1 1 1 AAA C-terminal domain IstB_IS21 PF01695.17 gi|320100774|ref|YP_004176366.1| - 0.001 18.8 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|320100774|ref|YP_004176366.1| - 0.0018 18.5 0.0 0.0044 17.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|320100774|ref|YP_004176366.1| - 0.0035 17.1 0.0 0.0056 16.5 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_2 PF07724.14 gi|320100774|ref|YP_004176366.1| - 0.0042 17.2 0.0 0.0085 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_28 PF13521.6 gi|320100774|ref|YP_004176366.1| - 0.006 16.8 0.0 0.017 15.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|320100774|ref|YP_004176366.1| - 0.014 15.2 0.0 0.036 13.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|320100774|ref|YP_004176366.1| - 0.015 14.9 0.3 0.055 13.0 0.2 2.0 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|320100774|ref|YP_004176366.1| - 0.018 15.6 0.0 0.061 13.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|320100774|ref|YP_004176366.1| - 0.023 13.9 0.1 0.066 12.4 0.0 1.8 2 1 0 2 2 2 0 NB-ARC domain AAA_7 PF12775.7 gi|320100774|ref|YP_004176366.1| - 0.038 13.5 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|320100774|ref|YP_004176366.1| - 0.039 13.9 0.1 0.44 10.5 0.0 2.7 3 1 1 4 4 4 0 NACHT domain AAA_17 PF13207.6 gi|320100774|ref|YP_004176366.1| - 0.06 13.8 0.0 0.18 12.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain DNA_pol3_delta2 PF13177.6 gi|320100774|ref|YP_004176366.1| - 0.061 13.1 0.0 0.24 11.2 0.0 1.9 1 1 1 2 2 2 0 DNA polymerase III, delta subunit TsaE PF02367.17 gi|320100774|ref|YP_004176366.1| - 0.067 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|320100774|ref|YP_004176366.1| - 0.071 13.6 0.0 0.33 11.5 0.0 2.0 1 1 1 2 2 2 0 ABC transporter NTPase_1 PF03266.15 gi|320100774|ref|YP_004176366.1| - 0.1 12.5 0.0 4.8 7.1 0.0 2.3 1 1 1 2 2 2 0 NTPase Peptidase_S48 PF03574.15 gi|320100774|ref|YP_004176366.1| - 0.12 12.5 0.3 0.22 11.7 0.3 1.4 1 0 0 1 1 1 0 Peptidase family S48 AAA_23 PF13476.6 gi|320100774|ref|YP_004176366.1| - 0.12 12.8 0.0 0.35 11.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain Mg_chelatase PF01078.21 gi|320100774|ref|YP_004176366.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|320100774|ref|YP_004176366.1| - 0.17 11.0 0.0 0.36 10.0 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain RNA_helicase PF00910.22 gi|320100774|ref|YP_004176366.1| - 0.19 12.1 0.0 0.43 11.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.11 gi|320100774|ref|YP_004176366.1| - 0.2 11.5 0.0 1.2 9.0 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_6 PF12774.7 gi|320100774|ref|YP_004176366.1| - 0.23 10.4 0.0 0.39 9.6 0.0 1.3 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region Rep_fac_C PF08542.11 gi|320100775|ref|YP_004176367.1| - 4.7e-26 91.0 0.2 1.3e-25 89.6 0.0 1.8 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|320100775|ref|YP_004176367.1| - 2.3e-15 57.2 0.0 4.5e-15 56.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|320100775|ref|YP_004176367.1| - 4.7e-15 55.8 0.0 7.4e-11 42.1 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|320100775|ref|YP_004176367.1| - 3.9e-08 33.2 0.0 9.8e-08 31.9 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DNA_pol3_delta PF06144.13 gi|320100775|ref|YP_004176367.1| - 4.6e-08 33.0 0.1 1.9e-06 27.8 0.0 2.4 3 0 0 3 3 2 1 DNA polymerase III, delta subunit Rad17 PF03215.15 gi|320100775|ref|YP_004176367.1| - 7e-07 29.3 0.0 1.4e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|320100775|ref|YP_004176367.1| - 4.2e-06 27.3 0.3 0.0017 18.8 0.0 2.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_5 PF07728.14 gi|320100775|ref|YP_004176367.1| - 6.1e-06 26.3 0.0 3.7e-05 23.7 0.0 2.4 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|320100775|ref|YP_004176367.1| - 6.1e-06 26.3 0.1 7.2e-05 22.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|320100775|ref|YP_004176367.1| - 7.1e-06 26.3 0.1 3e-05 24.3 0.1 2.2 2 0 0 2 2 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|320100775|ref|YP_004176367.1| - 2e-05 24.9 1.2 0.23 11.7 0.0 3.0 2 2 1 3 3 3 2 AAA domain AAA_3 PF07726.11 gi|320100775|ref|YP_004176367.1| - 8.2e-05 22.5 0.0 0.00018 21.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|320100775|ref|YP_004176367.1| - 0.00013 21.5 0.1 0.0062 15.9 0.0 2.3 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|320100775|ref|YP_004176367.1| - 0.00015 21.5 0.0 0.00029 20.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein PhoH PF02562.16 gi|320100775|ref|YP_004176367.1| - 0.00053 19.5 0.2 0.063 12.7 0.0 2.4 1 1 1 2 2 2 1 PhoH-like protein AAA_18 PF13238.6 gi|320100775|ref|YP_004176367.1| - 0.00073 20.1 0.1 0.0025 18.3 0.0 1.9 2 1 0 2 2 1 1 AAA domain ResIII PF04851.15 gi|320100775|ref|YP_004176367.1| - 0.0019 18.2 0.0 0.14 12.2 0.0 2.3 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|320100775|ref|YP_004176367.1| - 0.002 17.7 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|320100775|ref|YP_004176367.1| - 0.0021 17.8 1.0 0.29 10.8 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|320100775|ref|YP_004176367.1| - 0.0029 17.7 0.0 0.0054 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_11 PF13086.6 gi|320100775|ref|YP_004176367.1| - 0.0041 16.9 0.0 0.012 15.4 0.0 1.7 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.13 gi|320100775|ref|YP_004176367.1| - 0.0064 15.7 0.0 0.0097 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NTPase_1 PF03266.15 gi|320100775|ref|YP_004176367.1| - 0.011 15.7 0.0 0.43 10.5 0.0 2.4 1 1 1 2 2 2 0 NTPase Sigma54_activat PF00158.26 gi|320100775|ref|YP_004176367.1| - 0.011 15.4 0.0 0.4 10.4 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain TIP49 PF06068.13 gi|320100775|ref|YP_004176367.1| - 0.012 14.9 0.0 0.036 13.3 0.0 1.8 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_33 PF13671.6 gi|320100775|ref|YP_004176367.1| - 0.015 15.5 0.1 0.03 14.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain DNA_pol3_gamma3 PF12169.8 gi|320100775|ref|YP_004176367.1| - 0.015 15.2 0.2 1.1 9.1 0.0 3.1 3 0 0 3 3 3 0 DNA polymerase III subunits gamma and tau domain III TniB PF05621.11 gi|320100775|ref|YP_004176367.1| - 0.016 14.6 0.1 1.7 8.0 0.0 2.6 1 1 1 2 2 2 0 Bacterial TniB protein RNA_helicase PF00910.22 gi|320100775|ref|YP_004176367.1| - 0.016 15.6 0.0 0.031 14.7 0.0 1.6 1 1 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|320100775|ref|YP_004176367.1| - 0.016 15.1 0.0 0.2 11.6 0.0 2.5 1 1 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|320100775|ref|YP_004176367.1| - 0.017 14.7 0.2 0.048 13.2 0.1 1.9 2 1 0 2 2 1 0 AAA domain AAA_24 PF13479.6 gi|320100775|ref|YP_004176367.1| - 0.023 14.4 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|320100775|ref|YP_004176367.1| - 0.029 13.7 0.1 0.24 10.7 0.0 2.3 3 0 0 3 3 2 0 FtsK/SpoIIIE family ATPase_2 PF01637.18 gi|320100775|ref|YP_004176367.1| - 0.035 14.0 0.0 0.065 13.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea KTI12 PF08433.10 gi|320100775|ref|YP_004176367.1| - 0.085 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_19 PF13245.6 gi|320100775|ref|YP_004176367.1| - 0.095 13.0 0.4 0.63 10.4 0.1 2.2 1 1 1 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|320100775|ref|YP_004176367.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.20 gi|320100775|ref|YP_004176367.1| - 0.12 12.3 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF4373 PF14297.6 gi|320100775|ref|YP_004176367.1| - 0.12 13.2 0.6 1.5 9.6 0.0 2.8 3 0 0 3 3 2 0 Domain of unknown function (DUF4373) Sigma54_activ_2 PF14532.6 gi|320100775|ref|YP_004176367.1| - 0.15 12.2 0.0 0.46 10.6 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain CbiA PF01656.23 gi|320100775|ref|YP_004176367.1| - 0.21 11.7 0.0 0.41 10.7 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Sld5 PF05916.11 gi|320100776|ref|YP_004176368.1| - 4.6e-05 23.8 0.2 7.1e-05 23.2 0.2 1.3 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.23 gi|320100777|ref|YP_004176369.1| - 1.4e-99 331.8 0.0 1.9e-99 331.3 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|320100777|ref|YP_004176369.1| - 3.2e-36 124.0 0.1 8.3e-36 122.6 0.0 1.7 2 0 0 2 2 2 1 MCM OB domain MCM_lid PF17855.1 gi|320100777|ref|YP_004176369.1| - 4.1e-27 94.4 1.1 1.2e-26 92.9 1.1 1.9 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|320100777|ref|YP_004176369.1| - 5.6e-16 59.0 0.4 2.6e-15 56.9 0.0 2.3 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.14 gi|320100777|ref|YP_004176369.1| - 3.6e-09 36.7 0.0 1.2e-08 35.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|320100777|ref|YP_004176369.1| - 5.9e-06 25.8 0.0 0.0011 18.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|320100777|ref|YP_004176369.1| - 0.00019 21.3 0.0 0.00049 20.0 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|320100777|ref|YP_004176369.1| - 0.0075 16.0 0.2 0.084 12.6 0.1 2.5 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|320100777|ref|YP_004176369.1| - 0.046 14.1 0.1 0.19 12.1 0.1 2.0 1 0 0 1 1 1 0 AAA ATPase domain tRNA_anti-like PF12869.7 gi|320100777|ref|YP_004176369.1| - 0.062 12.9 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 tRNA_anti-like RuvB_C PF05491.13 gi|320100778|ref|YP_004176370.1| - 0.091 12.7 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain 4HBT PF03061.22 gi|320100779|ref|YP_004176371.1| - 4.7e-05 23.7 0.0 6.5e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily zf-IS66 PF13005.7 gi|320100780|ref|YP_004176372.1| - 0.0038 17.6 1.0 0.39 11.1 0.1 2.3 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Zn_ribbon_SprT PF17283.2 gi|320100780|ref|YP_004176372.1| - 0.011 15.6 2.2 0.35 10.8 0.2 2.5 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|320100780|ref|YP_004176372.1| - 0.02 15.0 1.1 0.79 9.9 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|320100780|ref|YP_004176372.1| - 0.021 14.7 3.4 3.1 7.8 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|320100780|ref|YP_004176372.1| - 0.022 14.7 1.7 3.5 7.7 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|320100780|ref|YP_004176372.1| - 0.037 13.7 5.0 0.58 9.9 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|320100780|ref|YP_004176372.1| - 0.054 13.0 1.0 5.5 6.6 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|320100780|ref|YP_004176372.1| - 0.092 12.4 1.3 8.9 6.0 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|320100780|ref|YP_004176372.1| - 0.26 11.2 4.9 0.61 10.1 0.2 2.5 2 1 0 2 2 2 0 Nudix N-terminal tRNA_NucTransf2 PF09249.11 gi|320100782|ref|YP_004176374.1| - 5.3e-38 129.7 0.0 9.1e-38 129.0 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|320100782|ref|YP_004176374.1| - 4.7e-11 42.8 0.0 1.3e-10 41.4 0.0 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|320100782|ref|YP_004176374.1| - 0.011 16.0 0.0 0.031 14.5 0.0 1.7 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain LigT_PEase PF02834.16 gi|320100783|ref|YP_004176375.1| - 3.4e-31 107.3 0.0 1e-17 64.1 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|320100783|ref|YP_004176375.1| - 2.6e-10 40.4 0.0 3.1e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|320100783|ref|YP_004176375.1| - 1.6e-08 34.7 0.0 2.6e-07 30.7 0.0 2.0 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|320100783|ref|YP_004176375.1| - 0.017 14.6 0.0 0.53 9.7 0.0 2.0 1 1 1 2 2 2 0 Uncharacterised conserved protein AAA_17 PF13207.6 gi|320100784|ref|YP_004176376.1| - 3.9e-16 59.7 0.1 5.3e-16 59.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|320100784|ref|YP_004176376.1| - 5.8e-13 49.5 0.0 8.7e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|320100784|ref|YP_004176376.1| - 4.1e-06 27.0 0.0 9e-06 25.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|320100784|ref|YP_004176376.1| - 0.022 15.1 0.1 0.037 14.4 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|320100784|ref|YP_004176376.1| - 0.024 13.9 0.2 0.26 10.5 0.1 2.2 1 1 0 2 2 2 0 Zeta toxin ApbA_C PF08546.11 gi|320100784|ref|YP_004176376.1| - 0.06 13.5 0.1 0.65 10.2 0.0 2.3 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal AAA PF00004.29 gi|320100784|ref|YP_004176376.1| - 0.078 13.4 0.1 0.14 12.6 0.1 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|320100784|ref|YP_004176376.1| - 0.09 12.4 0.0 1.1 8.8 0.0 2.3 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Ribosomal_L26 PF16906.5 gi|320100784|ref|YP_004176376.1| - 0.13 12.7 0.1 0.21 12.1 0.1 1.3 1 0 0 1 1 1 0 Ribosomal proteins L26 eukaryotic, L24P archaeal RNA_binding PF01877.17 gi|320100785|ref|YP_004176377.1| - 4.2e-16 59.3 0.0 7.6e-16 58.5 0.0 1.4 1 1 0 1 1 1 1 RNA binding Pox_A22 PF04848.13 gi|320100785|ref|YP_004176377.1| - 0.056 13.5 0.0 0.064 13.4 0.0 1.1 1 0 0 1 1 1 0 Poxvirus A22 protein Lactamase_B_2 PF12706.7 gi|320100786|ref|YP_004176378.1| - 2.9e-22 79.2 0.0 3.7e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|320100786|ref|YP_004176378.1| - 1.5e-13 51.2 0.1 2.2e-13 50.7 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|320100786|ref|YP_004176378.1| - 2.8e-11 42.9 0.0 5.3e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease Lactamase_B_3 PF13483.6 gi|320100786|ref|YP_004176378.1| - 0.0007 19.5 0.0 0.0016 18.4 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain UPF0020 PF01170.18 gi|320100787|ref|YP_004176379.1| - 7.1e-19 68.3 0.0 7.3e-18 65.0 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|320100787|ref|YP_004176379.1| - 6.2e-09 35.9 0.0 1.8e-06 27.9 0.0 2.1 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.15 gi|320100787|ref|YP_004176379.1| - 8.6e-05 22.2 0.0 0.00014 21.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|320100787|ref|YP_004176379.1| - 0.035 13.7 0.0 0.054 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain N6_Mtase PF02384.16 gi|320100787|ref|YP_004176379.1| - 0.17 11.1 0.0 0.82 8.9 0.0 1.9 1 1 0 1 1 1 0 N-6 DNA Methylase Pribosyltran_N PF13793.6 gi|320100788|ref|YP_004176380.1| - 7.7e-21 74.2 0.0 6.4e-19 68.0 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|320100788|ref|YP_004176380.1| - 1.2e-17 63.9 1.7 6.1e-17 61.6 0.8 2.1 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|320100788|ref|YP_004176380.1| - 3e-08 33.9 1.7 6.4e-08 32.8 0.4 2.1 3 0 0 3 3 3 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|320100788|ref|YP_004176380.1| - 0.00029 20.4 0.0 0.00052 19.5 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|320100788|ref|YP_004176380.1| - 0.02 14.4 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Amdase PF17645.1 gi|320100788|ref|YP_004176380.1| - 0.062 12.9 1.6 2.3 7.8 0.2 3.1 3 1 0 3 3 3 0 Arylmalonate decarboxylase Radical_SAM PF04055.21 gi|320100789|ref|YP_004176381.1| - 2.5e-19 70.3 0.0 1.6e-18 67.7 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily DNA_ligase_ZBD PF03119.16 gi|320100789|ref|YP_004176381.1| - 0.0014 18.6 1.0 0.69 10.0 0.0 2.9 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain Fer4_12 PF13353.6 gi|320100789|ref|YP_004176381.1| - 0.0029 17.9 0.1 0.0054 17.0 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.6 gi|320100789|ref|YP_004176381.1| - 0.0059 16.0 2.9 0.16 11.4 0.1 2.7 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|320100789|ref|YP_004176381.1| - 0.013 14.9 5.5 0.093 12.3 0.0 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.19 gi|320100789|ref|YP_004176381.1| - 0.068 13.0 0.0 0.068 13.0 0.0 3.3 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 gi|320100789|ref|YP_004176381.1| - 0.28 11.2 0.0 0.28 11.2 0.0 2.7 3 0 0 3 3 3 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|320100789|ref|YP_004176381.1| - 0.89 9.7 0.1 0.89 9.7 0.1 3.3 4 0 0 4 4 4 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|320100789|ref|YP_004176381.1| - 3.3 7.5 11.2 0.56 10.0 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|320100789|ref|YP_004176381.1| - 3.7 7.6 18.4 0.16 11.9 0.5 3.8 3 1 1 4 4 4 0 Transposase zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|320100789|ref|YP_004176381.1| - 8.3 6.7 6.8 4.8 7.4 2.5 2.8 3 1 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ATP_bind_1 PF03029.17 gi|320100790|ref|YP_004176382.1| - 2.3e-58 197.8 0.0 2.6e-58 197.6 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|320100790|ref|YP_004176382.1| - 0.00027 20.8 0.0 0.0061 16.4 0.0 2.1 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop PduV-EutP PF10662.9 gi|320100790|ref|YP_004176382.1| - 0.00047 19.9 0.0 0.27 11.0 0.0 2.6 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|320100790|ref|YP_004176382.1| - 0.0012 18.4 0.0 0.0097 15.5 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain CbiA PF01656.23 gi|320100790|ref|YP_004176382.1| - 0.0016 18.5 0.0 0.0018 18.3 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.6 gi|320100790|ref|YP_004176382.1| - 0.0025 18.3 0.0 0.006 17.1 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|320100790|ref|YP_004176382.1| - 0.0074 16.7 0.0 0.0096 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain FeoB_N PF02421.18 gi|320100790|ref|YP_004176382.1| - 0.0096 15.5 0.1 0.32 10.5 0.0 2.7 2 1 0 3 3 3 1 Ferrous iron transport protein B SRP54 PF00448.22 gi|320100790|ref|YP_004176382.1| - 0.012 15.3 0.0 0.1 12.2 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Gtr1_RagA PF04670.12 gi|320100790|ref|YP_004176382.1| - 0.013 14.8 0.1 0.058 12.7 0.1 1.9 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region RsgA_GTPase PF03193.16 gi|320100790|ref|YP_004176382.1| - 0.019 14.9 0.1 15 5.4 0.0 3.1 3 0 0 3 3 3 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|320100790|ref|YP_004176382.1| - 0.021 14.9 0.0 0.098 12.7 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|320100790|ref|YP_004176382.1| - 0.051 13.9 0.0 0.36 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|320100790|ref|YP_004176382.1| - 0.057 13.5 0.0 0.088 12.9 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|320100790|ref|YP_004176382.1| - 0.063 13.0 0.0 0.093 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|320100790|ref|YP_004176382.1| - 0.087 11.9 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|320100790|ref|YP_004176382.1| - 0.09 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain PhoH PF02562.16 gi|320100790|ref|YP_004176382.1| - 0.11 11.9 0.0 0.25 10.8 0.0 1.5 2 0 0 2 2 2 0 PhoH-like protein SRPRB PF09439.10 gi|320100790|ref|YP_004176382.1| - 0.16 11.4 0.0 4.7 6.6 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit cobW PF02492.19 gi|320100790|ref|YP_004176382.1| - 0.16 11.5 0.6 1.6 8.3 0.6 2.2 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|320100790|ref|YP_004176382.1| - 0.19 11.0 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Hydrolase PF00702.26 gi|320100791|ref|YP_004176383.1| - 2.8e-09 37.6 0.3 4.2e-06 27.2 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|320100791|ref|YP_004176383.1| - 5.7e-09 36.6 0.1 9.9e-09 35.9 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|320100791|ref|YP_004176383.1| - 3.7e-08 33.7 0.0 1.3e-07 31.9 0.0 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|320100791|ref|YP_004176383.1| - 6.2e-06 26.1 0.4 0.00019 21.3 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|320100791|ref|YP_004176383.1| - 0.00029 20.6 0.0 0.0011 18.7 0.0 1.8 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.6 gi|320100791|ref|YP_004176383.1| - 0.018 15.1 0.0 0.05 13.7 0.0 1.9 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase NT5C PF06941.12 gi|320100791|ref|YP_004176383.1| - 0.032 14.1 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RF3_C PF16658.5 gi|320100791|ref|YP_004176383.1| - 0.19 11.5 0.0 1.9 8.3 0.0 2.0 1 1 1 2 2 2 0 Class II release factor RF3, C-terminal domain Asparaginase_2 PF01112.18 gi|320100792|ref|YP_004176384.1| - 5.8e-74 248.9 0.0 6.5e-74 248.7 0.0 1.0 1 0 0 1 1 1 1 Asparaginase ROK PF00480.20 gi|320100794|ref|YP_004176386.1| - 5.5e-59 200.0 0.0 6.9e-59 199.7 0.0 1.0 1 0 0 1 1 1 1 ROK family Glucokinase PF02685.16 gi|320100794|ref|YP_004176386.1| - 0.0084 15.1 0.0 0.023 13.7 0.0 1.6 2 0 0 2 2 2 1 Glucokinase tRNA-synt_1g PF09334.11 gi|320100795|ref|YP_004176387.1| - 3.7e-96 322.3 0.7 1.8e-50 171.8 0.0 2.2 1 1 1 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|320100795|ref|YP_004176387.1| - 2.8e-29 101.9 0.1 8.6e-16 57.3 0.1 3.8 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|320100795|ref|YP_004176387.1| - 2.8e-07 30.6 0.1 6.5e-07 29.4 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|320100795|ref|YP_004176387.1| - 4.6e-07 29.5 0.7 0.00073 19.0 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|320100795|ref|YP_004176387.1| - 1.7e-05 23.9 0.2 0.0015 17.5 0.0 2.9 2 1 1 3 3 3 1 tRNA synthetases class I (K) Radical_SAM PF04055.21 gi|320100796|ref|YP_004176388.1| - 5.5e-17 62.6 0.2 2.8e-16 60.4 0.1 2.3 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|320100796|ref|YP_004176388.1| - 0.00013 21.9 0.0 0.085 12.9 0.0 2.5 2 0 0 2 2 2 2 B12 binding domain TrmB PF01978.19 gi|320100797|ref|YP_004176389.1| - 2.9e-07 30.3 0.6 6.2e-07 29.2 0.6 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|320100797|ref|YP_004176389.1| - 9.7e-07 28.6 0.2 5.5e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|320100797|ref|YP_004176389.1| - 8.3e-06 25.5 0.6 3.1e-05 23.7 0.0 2.1 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|320100797|ref|YP_004176389.1| - 3.3e-05 23.7 1.9 4.1e-05 23.4 0.2 2.0 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|320100797|ref|YP_004176389.1| - 0.00019 21.4 1.2 0.0034 17.4 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|320100797|ref|YP_004176389.1| - 0.00029 20.3 0.4 0.00071 19.1 0.4 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|320100797|ref|YP_004176389.1| - 0.0027 18.1 0.7 0.0088 16.5 0.1 2.1 3 0 0 3 3 3 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|320100797|ref|YP_004176389.1| - 0.013 15.9 0.2 0.015 15.6 0.2 1.1 1 0 0 1 1 1 0 Penicillinase repressor HTH_47 PF16221.5 gi|320100797|ref|YP_004176389.1| - 0.021 14.4 0.3 0.12 11.9 0.2 2.0 2 0 0 2 2 2 0 winged helix-turn-helix Peptidase_S78 PF04586.17 gi|320100797|ref|YP_004176389.1| - 0.023 14.9 0.1 0.029 14.5 0.1 1.2 1 0 0 1 1 1 0 Caudovirus prohead serine protease HTH_34 PF13601.6 gi|320100797|ref|YP_004176389.1| - 0.025 14.8 0.3 0.042 14.0 0.3 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain PuR_N PF09182.10 gi|320100797|ref|YP_004176389.1| - 0.036 14.0 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HSCB_C PF07743.13 gi|320100797|ref|YP_004176389.1| - 0.041 14.4 1.0 0.059 13.9 1.0 1.3 1 0 0 1 1 1 0 HSCB C-terminal oligomerisation domain HTH_Mga PF08280.11 gi|320100797|ref|YP_004176389.1| - 0.073 13.1 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain PepSY_2 PF13670.6 gi|320100797|ref|YP_004176389.1| - 0.081 12.9 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain DprA_WH PF17782.1 gi|320100797|ref|YP_004176389.1| - 0.39 10.9 0.1 0.39 10.9 0.1 1.9 3 0 0 3 3 3 0 DprA winged helix domain SPC12 PF06645.13 gi|320100798|ref|YP_004176390.1| - 1.9 8.6 10.5 0.27 11.3 3.9 2.3 2 1 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF2299 PF10061.9 gi|320100799|ref|YP_004176391.1| - 3.4e-26 91.6 0.0 3.9e-26 91.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) HTH_ParB PF17762.1 gi|320100799|ref|YP_004176391.1| - 0.11 12.3 0.1 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 HTH domain found in ParB protein SNARE_assoc PF09335.11 gi|320100800|ref|YP_004176392.1| - 9.8e-08 32.5 7.2 9.8e-08 32.5 7.2 2.4 1 1 1 2 2 2 1 SNARE associated Golgi protein FtsX PF02687.21 gi|320100800|ref|YP_004176392.1| - 9.7 6.7 13.7 4.1 7.9 2.8 2.6 3 0 0 3 3 3 0 FtsX-like permease family MS_channel PF00924.18 gi|320100801|ref|YP_004176393.1| - 8.5e-16 58.1 4.2 8.5e-16 58.1 4.2 2.2 3 1 0 3 3 3 1 Mechanosensitive ion channel DUF2749 PF10907.8 gi|320100801|ref|YP_004176393.1| - 2.9 8.1 5.1 16 5.7 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) MFS_1 PF07690.16 gi|320100802|ref|YP_004176394.1| - 0.0019 17.2 45.5 0.0027 16.7 5.9 3.0 2 1 0 3 3 3 3 Major Facilitator Superfamily DSPc PF00782.20 gi|320100803|ref|YP_004176395.1| - 8.4e-11 41.8 0.0 1.6e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|320100803|ref|YP_004176395.1| - 0.0035 16.9 0.0 0.0044 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|320100803|ref|YP_004176395.1| - 0.015 15.0 0.2 0.026 14.2 0.0 1.5 2 0 0 2 2 2 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.6 gi|320100803|ref|YP_004176395.1| - 0.027 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 Tyrosine phosphatase family AIRS PF00586.24 gi|320100804|ref|YP_004176396.1| - 5.4e-15 55.8 0.1 1.4e-14 54.5 0.0 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Polysacc_synt PF01943.17 gi|320100805|ref|YP_004176397.1| - 7.4e-17 61.6 15.4 7.4e-17 61.6 15.4 2.6 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|320100805|ref|YP_004176397.1| - 2.3e-08 33.6 10.9 2.3e-08 33.6 10.9 2.6 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein BatA PF07584.11 gi|320100806|ref|YP_004176398.1| - 0.085 13.2 2.1 0.22 11.9 2.1 1.7 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal FIST_C PF10442.9 gi|320100806|ref|YP_004176398.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 FIST C domain CstA PF02554.14 gi|320100808|ref|YP_004176400.1| - 5.5e-99 331.6 24.3 1.1e-98 330.6 24.3 1.4 1 0 0 1 1 1 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|320100808|ref|YP_004176400.1| - 4.8e-27 94.6 5.9 4.8e-27 94.6 5.9 3.3 3 1 1 4 4 4 1 5TM C-terminal transporter carbon starvation CstA 60KD_IMP PF02096.20 gi|320100808|ref|YP_004176400.1| - 1.3 8.9 11.3 3.6 7.5 1.4 2.7 2 0 0 2 2 2 0 60Kd inner membrane protein ArsA_ATPase PF02374.15 gi|320100810|ref|YP_004176402.1| - 3.5e-36 125.0 0.0 4.6e-36 124.6 0.0 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|320100810|ref|YP_004176402.1| - 9.1e-09 35.5 0.0 1.8e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|320100810|ref|YP_004176402.1| - 6e-08 32.8 0.0 9.1e-08 32.2 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|320100810|ref|YP_004176402.1| - 4.2e-07 29.7 0.3 0.00081 18.9 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_25 PF13481.6 gi|320100810|ref|YP_004176402.1| - 0.011 15.3 0.0 0.062 12.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain Fer4_NifH PF00142.18 gi|320100810|ref|YP_004176402.1| - 0.038 13.5 0.0 0.24 10.8 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.17 gi|320100810|ref|YP_004176402.1| - 0.091 12.5 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein MipZ PF09140.11 gi|320100810|ref|YP_004176402.1| - 0.14 11.5 0.3 0.99 8.6 0.1 2.1 2 1 0 2 2 2 0 ATPase MipZ MoeA_N PF03453.17 gi|320100811|ref|YP_004176403.1| - 1.8e-42 144.8 1.0 3.3e-42 143.9 1.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|320100811|ref|YP_004176403.1| - 1.3e-25 89.7 0.1 2.2e-25 89.0 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|320100811|ref|YP_004176403.1| - 3.7e-16 59.1 0.0 1.6e-15 57.0 0.0 2.2 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) EamA PF00892.20 gi|320100812|ref|YP_004176404.1| - 2.6e-16 60.0 37.5 1.5e-08 34.9 14.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family tRNA-synt_1d PF00750.19 gi|320100813|ref|YP_004176405.1| - 7.8e-29 100.7 0.1 2.2e-13 49.9 0.1 2.1 1 1 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|320100813|ref|YP_004176405.1| - 8.6e-15 55.0 0.3 6.7e-14 52.1 0.1 2.6 2 1 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1e PF01406.19 gi|320100813|ref|YP_004176405.1| - 2.9e-05 23.6 0.1 7.2e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain Arg_tRNA_synt_N PF03485.16 gi|320100813|ref|YP_004176405.1| - 0.048 14.2 0.0 0.11 13.0 0.0 1.6 1 0 0 1 1 1 0 Arginyl tRNA synthetase N terminal domain CorA PF01544.18 gi|320100813|ref|YP_004176405.1| - 0.2 11.0 0.3 1.6 8.0 0.1 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein RXLR PF16810.5 gi|320100813|ref|YP_004176405.1| - 0.21 12.0 0.4 27 5.2 0.0 2.4 2 0 0 2 2 2 0 RXLR phytopathogen effector protein, Avirulence activity AFOR_N PF02730.15 gi|320100814|ref|YP_004176406.1| - 1.6e-30 106.5 0.0 2.2e-30 106.0 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|320100814|ref|YP_004176406.1| - 3.9e-15 55.7 0.0 4.1e-14 52.4 0.0 2.0 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 PadR PF03551.14 gi|320100815|ref|YP_004176407.1| - 2.5e-15 56.2 1.2 1.2e-14 54.0 0.2 2.1 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|320100815|ref|YP_004176407.1| - 5.8e-05 23.2 0.0 0.00019 21.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|320100815|ref|YP_004176407.1| - 0.00095 19.6 0.5 0.0037 17.7 0.1 2.2 3 0 0 3 3 3 1 Winged helix DNA-binding domain CK2S PF15011.6 gi|320100815|ref|YP_004176407.1| - 0.0011 18.8 1.1 0.0043 16.9 0.2 1.9 1 1 1 2 2 2 1 Casein Kinase 2 substrate ABC_tran PF00005.27 gi|320100816|ref|YP_004176408.1| - 3.7e-35 121.4 0.0 4.7e-35 121.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100816|ref|YP_004176408.1| - 6.9e-06 26.1 0.0 0.1 12.4 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|320100816|ref|YP_004176408.1| - 5.7e-05 22.8 0.2 0.00011 21.9 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|320100816|ref|YP_004176408.1| - 0.00013 22.4 0.1 0.00019 21.9 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|320100816|ref|YP_004176408.1| - 0.00028 20.8 0.0 0.00049 20.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|320100816|ref|YP_004176408.1| - 0.00042 19.8 0.0 0.7 9.3 0.1 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|320100816|ref|YP_004176408.1| - 0.0012 19.1 0.1 0.0039 17.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|320100816|ref|YP_004176408.1| - 0.0021 17.8 0.1 0.23 11.1 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|320100816|ref|YP_004176408.1| - 0.0034 17.9 0.0 0.0051 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|320100816|ref|YP_004176408.1| - 0.0067 16.0 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|320100816|ref|YP_004176408.1| - 0.013 15.6 0.2 0.043 13.9 0.1 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase T2SSE PF00437.20 gi|320100816|ref|YP_004176408.1| - 0.024 13.7 0.0 0.038 13.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|320100816|ref|YP_004176408.1| - 0.045 13.7 0.1 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|320100816|ref|YP_004176408.1| - 0.059 13.1 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|320100816|ref|YP_004176408.1| - 0.063 13.0 0.0 0.097 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|320100816|ref|YP_004176408.1| - 0.077 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Cytidylate_kin PF02224.18 gi|320100816|ref|YP_004176408.1| - 0.079 12.7 0.4 0.45 10.2 0.1 2.0 1 1 1 2 2 2 0 Cytidylate kinase AAA_33 PF13671.6 gi|320100816|ref|YP_004176408.1| - 0.079 13.1 0.2 0.095 12.9 0.2 1.5 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|320100816|ref|YP_004176408.1| - 0.079 13.2 0.0 1.5 9.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|320100816|ref|YP_004176408.1| - 0.08 12.3 0.0 0.28 10.5 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|320100816|ref|YP_004176408.1| - 0.12 12.6 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|320100816|ref|YP_004176408.1| - 0.16 11.7 0.1 0.41 10.3 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|320100816|ref|YP_004176408.1| - 0.16 12.5 0.0 0.27 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain CARDB PF07705.11 gi|320100817|ref|YP_004176409.1| - 0.00016 21.9 3.8 1.4 9.2 0.0 5.9 7 1 0 7 7 7 1 CARDB NPCBM_assoc PF10633.9 gi|320100817|ref|YP_004176409.1| - 0.0026 18.0 12.5 5.9 7.2 0.0 6.2 8 0 0 8 8 8 3 NPCBM-associated, NEW3 domain of alpha-galactosidase He_PIG PF05345.12 gi|320100817|ref|YP_004176409.1| - 2 8.7 10.4 2.2 8.5 0.5 5.3 6 0 0 6 6 6 0 Putative Ig domain MacB_PCD PF12704.7 gi|320100818|ref|YP_004176410.1| - 8.6e-19 68.7 3.0 8.6e-19 68.7 3.0 2.2 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|320100818|ref|YP_004176410.1| - 2.6e-14 53.4 4.0 2.6e-14 53.4 4.0 3.4 4 0 0 4 4 4 1 FtsX-like permease family NapD PF03927.13 gi|320100818|ref|YP_004176410.1| - 0.017 15.1 0.0 0.59 10.2 0.0 2.5 2 0 0 2 2 2 0 NapD protein ATP_bind_3 PF01171.20 gi|320100819|ref|YP_004176411.1| - 4.7e-17 62.3 0.0 2.5e-16 60.0 0.0 2.0 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|320100819|ref|YP_004176411.1| - 0.0004 19.3 0.0 0.00053 18.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase zn-ribbon_14 PF16503.5 gi|320100819|ref|YP_004176411.1| - 0.00043 19.7 1.8 0.00043 19.7 1.8 2.5 3 0 0 3 3 3 1 Zinc-ribbon PAPS_reduct PF01507.19 gi|320100819|ref|YP_004176411.1| - 0.00049 20.2 0.0 0.00079 19.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Metallophos_3 PF14582.6 gi|320100820|ref|YP_004176412.1| - 3.2e-17 62.7 0.2 2.4e-12 46.7 0.0 2.2 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|320100820|ref|YP_004176412.1| - 4.3e-16 60.0 0.6 5.5e-16 59.7 0.6 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|320100820|ref|YP_004176412.1| - 8.5e-15 55.3 0.0 2.3e-14 53.9 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain CitMHS PF03600.16 gi|320100821|ref|YP_004176413.1| - 5.2e-34 117.8 27.2 5.2e-34 117.8 27.2 1.9 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|320100821|ref|YP_004176413.1| - 2.1e-06 27.1 24.4 0.0011 18.1 7.3 3.3 1 1 2 3 3 3 2 Sodium:sulfate symporter transmembrane region Aldolase_II PF00596.21 gi|320100822|ref|YP_004176414.1| - 8.2e-52 175.8 0.5 9.3e-52 175.7 0.5 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Peptidase_M32 PF02074.15 gi|320100823|ref|YP_004176415.1| - 4.2e-161 537.0 0.0 4.9e-161 536.8 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Ribosomal_L14e PF01929.17 gi|320100823|ref|YP_004176415.1| - 0.15 12.6 0.1 29 5.2 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L14 LDcluster4 PF18306.1 gi|320100824|ref|YP_004176416.1| - 3.8e-14 52.6 0.0 4.4e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|320100824|ref|YP_004176416.1| - 0.00072 19.7 0.0 0.00088 19.4 0.0 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.15 gi|320100824|ref|YP_004176416.1| - 0.065 13.2 0.0 0.09 12.8 0.0 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase TPALS PF18178.1 gi|320100824|ref|YP_004176416.1| - 0.2 11.1 0.2 0.44 9.9 0.1 1.6 2 0 0 2 2 2 0 TIR- and PNP-associating SLOG family DUF4129 PF13559.6 gi|320100825|ref|YP_004176417.1| - 0.0047 17.2 0.8 0.01 16.1 0.8 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4129) PSY3 PF16836.5 gi|320100825|ref|YP_004176417.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Shu complex component Psy3, DNA-binding description DUF4350 PF14258.6 gi|320100826|ref|YP_004176418.1| - 0.0016 18.8 0.1 0.0049 17.3 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) Synaptobrevin PF00957.21 gi|320100826|ref|YP_004176418.1| - 0.027 14.3 0.4 0.048 13.4 0.4 1.4 1 0 0 1 1 1 0 Synaptobrevin AAA_3 PF07726.11 gi|320100827|ref|YP_004176419.1| - 1.3e-62 209.5 0.1 1.9e-62 208.9 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|320100827|ref|YP_004176419.1| - 3.9e-20 71.5 0.6 6.8e-20 70.7 0.6 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|320100827|ref|YP_004176419.1| - 2.4e-17 63.2 0.0 1.1e-16 61.0 0.0 2.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|320100827|ref|YP_004176419.1| - 4.9e-07 30.2 0.0 1.4e-06 28.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|320100827|ref|YP_004176419.1| - 4.1e-06 26.6 0.0 3.3e-05 23.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|320100827|ref|YP_004176419.1| - 7.2e-06 25.5 0.3 0.052 12.9 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|320100827|ref|YP_004176419.1| - 2.1e-05 23.7 0.0 5.4e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|320100827|ref|YP_004176419.1| - 0.00026 20.8 0.1 0.0038 17.0 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|320100827|ref|YP_004176419.1| - 0.018 15.4 0.2 0.28 11.6 0.1 2.3 1 1 1 2 2 2 0 AAA ATPase domain DUF4548 PF15081.6 gi|320100827|ref|YP_004176419.1| - 0.059 13.2 0.0 11 5.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4548) DUF58 PF01882.18 gi|320100828|ref|YP_004176420.1| - 1.3e-15 57.5 0.0 3e-15 56.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF4350 PF14258.6 gi|320100828|ref|YP_004176420.1| - 0.032 14.7 0.1 0.13 12.7 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4350) DUF2721 PF11026.8 gi|320100830|ref|YP_004176422.1| - 0.16 11.8 6.0 0.19 11.6 6.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Gram_pos_anchor PF00746.21 gi|320100830|ref|YP_004176422.1| - 1.2 9.1 4.4 2.8 8.0 0.3 2.1 2 0 0 2 2 2 0 LPXTG cell wall anchor motif RseC_MucC PF04246.12 gi|320100830|ref|YP_004176422.1| - 2.6 8.0 4.2 2.7 8.0 4.2 1.0 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Lactamase_B_2 PF12706.7 gi|320100831|ref|YP_004176423.1| - 0.00011 21.9 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|320100831|ref|YP_004176423.1| - 0.00055 19.9 0.0 0.00083 19.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|320100831|ref|YP_004176423.1| - 0.0042 17.1 0.7 0.031 14.3 0.6 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Arc_C PF18162.1 gi|320100831|ref|YP_004176423.1| - 0.12 12.2 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Arc C-lobe DHH PF01368.20 gi|320100831|ref|YP_004176423.1| - 0.14 12.4 0.1 1.2 9.4 0.0 2.1 2 0 0 2 2 2 0 DHH family Pyr_redox_2 PF07992.14 gi|320100832|ref|YP_004176424.1| - 1.2e-51 175.7 1.2 1.6e-51 175.3 1.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|320100832|ref|YP_004176424.1| - 1.1e-16 61.2 1.0 1.6e-14 54.2 0.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|320100832|ref|YP_004176424.1| - 5.6e-09 35.7 0.5 3.4e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|320100832|ref|YP_004176424.1| - 5.7e-08 31.9 0.2 0.0017 17.2 0.0 3.2 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_dim PF02852.22 gi|320100832|ref|YP_004176424.1| - 1e-06 28.9 0.0 2.8e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_9 PF13454.6 gi|320100832|ref|YP_004176424.1| - 1.2e-06 28.6 1.8 0.021 14.8 0.2 3.2 3 0 0 3 3 3 2 FAD-NAD(P)-binding DAO PF01266.24 gi|320100832|ref|YP_004176424.1| - 2.5e-06 27.3 8.5 0.02 14.5 0.4 3.5 2 1 0 3 3 3 3 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|320100832|ref|YP_004176424.1| - 6.7e-06 25.7 0.7 0.0026 17.2 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|320100832|ref|YP_004176424.1| - 1.9e-05 23.9 1.7 7.5e-05 22.0 0.1 2.5 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|320100832|ref|YP_004176424.1| - 0.00016 20.9 7.2 0.031 13.3 0.1 4.0 3 1 2 5 5 5 2 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|320100832|ref|YP_004176424.1| - 0.00059 19.2 0.3 0.01 15.2 0.2 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase K_oxygenase PF13434.6 gi|320100832|ref|YP_004176424.1| - 0.0018 17.5 0.0 0.032 13.4 0.0 2.5 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|320100832|ref|YP_004176424.1| - 0.0022 16.9 7.3 0.4 9.5 0.6 3.1 2 1 1 3 3 3 2 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|320100832|ref|YP_004176424.1| - 0.024 14.0 0.1 0.053 12.8 0.1 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|320100832|ref|YP_004176424.1| - 0.8 8.7 3.5 11 5.0 0.6 2.8 2 1 1 3 3 3 0 Lycopene cyclase protein MFS_1 PF07690.16 gi|320100833|ref|YP_004176425.1| - 8.6e-10 38.1 46.9 8.6e-10 38.1 46.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily ABC_tran PF00005.27 gi|320100834|ref|YP_004176426.1| - 2e-28 99.6 0.0 3e-28 99.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100834|ref|YP_004176426.1| - 5.9e-16 59.1 1.1 2e-11 44.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|320100834|ref|YP_004176426.1| - 2.2e-09 37.9 0.0 6.5e-09 36.4 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) Rad17 PF03215.15 gi|320100834|ref|YP_004176426.1| - 0.00015 21.7 0.0 0.00022 21.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|320100834|ref|YP_004176426.1| - 0.0014 18.3 0.1 0.0028 17.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MukB PF04310.12 gi|320100834|ref|YP_004176426.1| - 0.0046 16.8 0.0 0.0073 16.1 0.0 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_15 PF13175.6 gi|320100834|ref|YP_004176426.1| - 0.0047 16.7 0.0 2.4 7.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|320100834|ref|YP_004176426.1| - 0.017 15.5 0.0 0.034 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|320100834|ref|YP_004176426.1| - 0.04 14.3 0.1 0.099 13.1 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|320100834|ref|YP_004176426.1| - 0.046 13.4 0.1 0.069 12.8 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|320100834|ref|YP_004176426.1| - 0.055 14.0 0.0 0.075 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|320100834|ref|YP_004176426.1| - 0.099 13.2 0.0 0.2 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|320100834|ref|YP_004176426.1| - 0.11 12.5 0.1 0.26 11.3 0.1 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MeaB PF03308.16 gi|320100834|ref|YP_004176426.1| - 0.11 11.4 0.2 0.19 10.7 0.2 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|320100834|ref|YP_004176426.1| - 0.12 12.1 0.0 0.34 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|320100834|ref|YP_004176426.1| - 0.2 11.1 0.0 19 4.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane PF01061.24 gi|320100836|ref|YP_004176428.1| - 0.00023 20.6 26.0 0.0005 19.6 26.0 1.5 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|320100836|ref|YP_004176428.1| - 1.3 8.1 27.7 0.079 12.1 21.5 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein CMD PF02627.20 gi|320100837|ref|YP_004176429.1| - 8.9e-18 64.1 0.1 1.3e-17 63.6 0.1 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family CBS PF00571.28 gi|320100838|ref|YP_004176430.1| - 7.9e-34 115.9 4.2 4e-18 65.6 0.4 2.1 2 0 0 2 2 2 2 CBS domain TrmO PF01980.16 gi|320100839|ref|YP_004176431.1| - 7.9e-31 106.8 0.0 1.2e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 tRNA-methyltransferase O Epimerase PF01370.21 gi|320100841|ref|YP_004176433.1| - 1.4e-52 178.6 0.1 1.4e-52 178.6 0.1 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|320100841|ref|YP_004176433.1| - 4.5e-51 174.2 0.0 5.7e-51 173.9 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|320100841|ref|YP_004176433.1| - 3e-20 72.5 0.0 1.5e-19 70.2 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|320100841|ref|YP_004176433.1| - 2.6e-19 69.3 0.1 3.1e-19 69.1 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|320100841|ref|YP_004176433.1| - 5.8e-17 61.7 0.0 7.1e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|320100841|ref|YP_004176433.1| - 2.1e-11 43.5 0.1 3.3e-07 29.7 0.0 2.6 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|320100841|ref|YP_004176433.1| - 1.4e-09 38.1 0.0 2e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|320100841|ref|YP_004176433.1| - 0.0067 16.0 0.1 0.027 14.0 0.1 1.8 2 0 0 2 2 2 1 NmrA-like family KR PF08659.10 gi|320100841|ref|YP_004176433.1| - 0.12 12.3 0.3 0.24 11.3 0.2 1.7 1 1 0 1 1 1 0 KR domain PALP PF00291.25 gi|320100842|ref|YP_004176434.1| - 2.7e-41 141.9 0.0 6.2e-41 140.7 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme MgtE PF01769.16 gi|320100843|ref|YP_004176435.1| - 2.5e-24 86.0 25.8 8.7e-13 48.7 3.3 3.0 2 1 1 3 3 3 2 Divalent cation transporter PhoU PF01895.19 gi|320100844|ref|YP_004176436.1| - 6.3e-07 29.8 1.6 0.0041 17.5 0.2 2.4 2 0 0 2 2 2 2 PhoU domain TrkA_C PF02080.21 gi|320100844|ref|YP_004176436.1| - 3.1e-05 23.7 0.0 0.0035 17.1 0.0 2.4 2 0 0 2 2 2 2 TrkA-C domain PhoU_div PF01865.16 gi|320100844|ref|YP_004176436.1| - 0.0083 15.5 1.4 0.048 13.0 0.4 2.5 2 1 1 3 3 3 2 Protein of unknown function DUF47 ABC_tran PF00005.27 gi|320100847|ref|YP_004176439.1| - 8.1e-33 113.8 0.0 6.2e-17 62.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|320100847|ref|YP_004176439.1| - 2.6e-09 37.3 7.4 0.00026 20.9 0.1 3.8 2 2 2 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|320100847|ref|YP_004176439.1| - 8.8e-07 28.6 0.4 0.03 14.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain T2SSE PF00437.20 gi|320100847|ref|YP_004176439.1| - 1.1e-06 27.9 0.0 0.00087 18.4 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_23 PF13476.6 gi|320100847|ref|YP_004176439.1| - 1.4e-06 28.9 0.6 0.0073 16.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|320100847|ref|YP_004176439.1| - 2.2e-06 28.0 0.3 0.036 14.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|320100847|ref|YP_004176439.1| - 3.5e-06 27.5 0.7 0.1 13.0 0.4 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.6 gi|320100847|ref|YP_004176439.1| - 4e-06 25.8 0.1 0.0017 17.1 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|320100847|ref|YP_004176439.1| - 4.4e-06 26.5 0.2 0.094 12.4 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA PF00004.29 gi|320100847|ref|YP_004176439.1| - 1.1e-05 25.8 0.4 0.6 10.5 0.0 3.5 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|320100847|ref|YP_004176439.1| - 2.4e-05 24.0 0.1 0.08 12.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|320100847|ref|YP_004176439.1| - 2.8e-05 24.4 1.5 0.23 11.7 0.3 3.3 4 0 0 4 4 3 2 AAA domain AAA_19 PF13245.6 gi|320100847|ref|YP_004176439.1| - 8.6e-05 22.9 0.3 0.52 10.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|320100847|ref|YP_004176439.1| - 0.00012 22.6 0.0 0.052 14.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|320100847|ref|YP_004176439.1| - 0.00013 21.9 2.1 0.28 11.1 0.1 2.4 2 0 0 2 2 2 2 NACHT domain ATPase_2 PF01637.18 gi|320100847|ref|YP_004176439.1| - 0.00037 20.5 0.1 0.021 14.7 0.0 2.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|320100847|ref|YP_004176439.1| - 0.00039 20.2 3.4 0.083 12.6 0.0 2.7 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.12 gi|320100847|ref|YP_004176439.1| - 0.0012 18.2 0.3 0.21 10.9 0.1 2.3 2 0 0 2 2 2 1 Zeta toxin Mg_chelatase PF01078.21 gi|320100847|ref|YP_004176439.1| - 0.0014 18.0 0.0 0.22 10.8 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DLIC PF05783.11 gi|320100847|ref|YP_004176439.1| - 0.0016 17.3 0.1 0.23 10.3 0.0 2.1 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) PduV-EutP PF10662.9 gi|320100847|ref|YP_004176439.1| - 0.0022 17.7 0.3 0.094 12.5 0.1 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation TsaE PF02367.17 gi|320100847|ref|YP_004176439.1| - 0.0029 17.6 0.8 3.5 7.6 0.1 2.6 3 0 0 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|320100847|ref|YP_004176439.1| - 0.003 17.9 0.4 2 8.8 0.0 3.0 3 0 0 3 3 2 1 RNA helicase FtsK_SpoIIIE PF01580.18 gi|320100847|ref|YP_004176439.1| - 0.0043 16.4 0.8 0.51 9.6 0.2 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family ATPase PF06745.13 gi|320100847|ref|YP_004176439.1| - 0.0051 16.2 0.5 0.39 10.0 0.1 2.5 2 0 0 2 2 2 1 KaiC AAA_33 PF13671.6 gi|320100847|ref|YP_004176439.1| - 0.0057 16.8 1.4 1.3 9.2 0.3 2.7 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|320100847|ref|YP_004176439.1| - 0.0073 15.8 0.9 0.14 11.6 0.1 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region NB-ARC PF00931.22 gi|320100847|ref|YP_004176439.1| - 0.0084 15.3 0.1 1.3 8.1 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain SRP54 PF00448.22 gi|320100847|ref|YP_004176439.1| - 0.01 15.4 1.8 2.3 7.8 0.1 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RuvB_N PF05496.12 gi|320100847|ref|YP_004176439.1| - 0.013 15.2 0.1 6.9 6.4 0.0 2.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain TrwB_AAD_bind PF10412.9 gi|320100847|ref|YP_004176439.1| - 0.026 13.4 0.6 3.8 6.3 0.1 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain SMC_N PF02463.19 gi|320100847|ref|YP_004176439.1| - 0.035 13.5 1.8 1.9 7.9 0.0 3.4 4 0 0 4 4 4 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|320100847|ref|YP_004176439.1| - 0.042 13.8 0.7 10 6.0 0.2 2.4 2 0 0 2 2 2 0 RsgA GTPase dNK PF01712.19 gi|320100847|ref|YP_004176439.1| - 0.044 13.6 0.1 7.5 6.3 0.0 2.2 2 0 0 2 2 2 0 Deoxynucleoside kinase cobW PF02492.19 gi|320100847|ref|YP_004176439.1| - 0.046 13.3 2.0 3.7 7.1 0.1 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATP-synt_ab PF00006.25 gi|320100847|ref|YP_004176439.1| - 0.059 13.0 0.0 9.9 5.8 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.17 gi|320100847|ref|YP_004176439.1| - 0.072 12.8 0.7 0.55 9.9 0.1 2.5 3 0 0 3 3 3 0 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|320100847|ref|YP_004176439.1| - 0.085 12.6 0.1 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain PIF1 PF05970.14 gi|320100847|ref|YP_004176439.1| - 0.087 12.0 0.5 1.3 8.1 0.1 2.2 2 0 0 2 2 2 0 PIF1-like helicase AAA_15 PF13175.6 gi|320100847|ref|YP_004176439.1| - 0.088 12.5 0.4 1.4 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 gi|320100847|ref|YP_004176439.1| - 0.088 12.8 0.5 5.4 7.0 0.2 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.9 gi|320100847|ref|YP_004176439.1| - 0.093 11.5 4.0 7.2 5.3 0.2 3.1 3 0 0 3 3 3 0 Predicted ATPase of the ABC class DEAD PF00270.29 gi|320100847|ref|YP_004176439.1| - 0.099 12.4 0.2 0.87 9.3 0.1 2.4 3 1 0 3 3 2 0 DEAD/DEAH box helicase ATP_bind_1 PF03029.17 gi|320100847|ref|YP_004176439.1| - 0.12 12.2 3.3 4.7 6.9 0.4 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|320100847|ref|YP_004176439.1| - 0.13 12.0 2.0 3.1 7.5 0.1 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF87 PF01935.17 gi|320100847|ref|YP_004176439.1| - 0.17 11.9 0.2 0.17 11.9 0.2 2.2 2 0 0 2 2 2 0 Helicase HerA, central domain DUF3584 PF12128.8 gi|320100847|ref|YP_004176439.1| - 0.24 8.9 4.3 0.13 9.8 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) MobB PF03205.14 gi|320100847|ref|YP_004176439.1| - 0.24 11.3 1.6 14 5.6 0.1 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Pox_A32 PF04665.12 gi|320100847|ref|YP_004176439.1| - 0.29 10.6 1.6 9.6 5.6 0.1 2.4 2 0 0 2 2 2 0 Poxvirus A32 protein NTPase_1 PF03266.15 gi|320100847|ref|YP_004176439.1| - 0.29 11.0 1.0 26 4.7 0.1 2.7 2 0 0 2 2 2 0 NTPase UvrD-helicase PF00580.21 gi|320100847|ref|YP_004176439.1| - 0.35 10.3 0.6 7.1 6.0 0.2 2.2 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain Thymidylate_kin PF02223.17 gi|320100847|ref|YP_004176439.1| - 0.53 9.9 1.4 3.3 7.3 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase AAA_17 PF13207.6 gi|320100847|ref|YP_004176439.1| - 0.77 10.2 4.8 11 6.5 0.1 2.6 3 0 0 3 3 2 0 AAA domain Nitroreductase PF00881.24 gi|320100849|ref|YP_004176441.1| - 5.9e-31 107.8 2.6 2.1e-19 70.2 0.5 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|320100849|ref|YP_004176441.1| - 4.1e-15 55.9 0.0 5.7e-06 26.0 0.0 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase PYC_OADA PF02436.18 gi|320100849|ref|YP_004176441.1| - 0.037 13.8 0.0 0.058 13.1 0.0 1.3 1 0 0 1 1 1 0 Conserved carboxylase domain Rhomboid PF01694.22 gi|320100850|ref|YP_004176442.1| - 4e-37 127.5 19.2 4e-37 127.5 19.2 2.1 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|320100850|ref|YP_004176442.1| - 0.0023 18.4 0.2 0.0023 18.4 0.2 3.2 4 0 0 4 4 4 1 Eukaryotic integral membrane protein (DUF1751) HTH_33 PF13592.6 gi|320100850|ref|YP_004176442.1| - 0.05 13.2 0.1 0.094 12.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Alpha-amylase PF00128.24 gi|320100851|ref|YP_004176443.1| - 9.8e-65 219.3 0.0 1.5e-64 218.8 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.18 gi|320100851|ref|YP_004176443.1| - 6.5e-06 26.5 0.1 0.0002 21.8 0.0 3.0 4 0 0 4 4 4 1 Alpha amylase, C-terminal all-beta domain Glyco_hydro_70 PF02324.16 gi|320100851|ref|YP_004176443.1| - 0.0011 17.3 0.0 0.0016 16.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 70 Malt_amylase_C PF16657.5 gi|320100851|ref|YP_004176443.1| - 0.0017 18.4 0.0 0.0041 17.2 0.0 1.7 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain GTA_holin_3TM PF11351.8 gi|320100851|ref|YP_004176443.1| - 0.076 13.6 0.2 0.14 12.7 0.2 1.4 1 0 0 1 1 1 0 Holin of 3TMs, for gene-transfer release GHL6 PF14871.6 gi|320100851|ref|YP_004176443.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 TMEM154 PF15102.6 gi|320100851|ref|YP_004176443.1| - 0.44 10.4 1.3 0.72 9.8 1.3 1.3 1 0 0 1 1 1 0 TMEM154 protein family Cation_efflux PF01545.21 gi|320100852|ref|YP_004176444.1| - 3.1e-40 138.1 11.7 3.6e-40 137.8 11.7 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|320100852|ref|YP_004176444.1| - 8.7e-17 61.0 1.8 1.5e-16 60.3 1.7 1.5 1 1 0 1 1 1 1 Dimerisation domain of Zinc Transporter YjcB PF15940.5 gi|320100852|ref|YP_004176444.1| - 0.0052 16.9 0.1 0.012 15.8 0.1 1.7 1 0 0 1 1 1 1 Family of unknown function DUF456 PF04306.13 gi|320100852|ref|YP_004176444.1| - 0.011 16.1 2.7 0.011 16.1 2.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF456) FmdE PF02663.14 gi|320100853|ref|YP_004176445.1| - 5.2e-38 130.1 0.0 6.4e-38 129.8 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|320100853|ref|YP_004176445.1| - 5e-07 29.5 0.6 1.1e-06 28.5 0.6 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger OrfB_Zn_ribbon PF07282.11 gi|320100853|ref|YP_004176445.1| - 0.029 14.3 0.1 0.058 13.3 0.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|320100853|ref|YP_004176445.1| - 0.11 12.5 3.4 4.1 7.5 0.8 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Hexapep PF00132.24 gi|320100853|ref|YP_004176445.1| - 0.21 11.4 1.6 0.21 11.4 0.3 1.7 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) Peripla_BP_2 PF01497.18 gi|320100854|ref|YP_004176446.1| - 5.5e-21 75.2 0.0 7.2e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|320100855|ref|YP_004176447.1| - 1.3e-67 228.1 42.1 1.5e-67 227.8 42.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|320100855|ref|YP_004176447.1| - 0.14 11.6 29.7 0.52 9.8 29.7 1.9 1 1 0 1 1 1 0 ABC 3 transport family ABC_tran PF00005.27 gi|320100856|ref|YP_004176448.1| - 4.4e-30 105.0 0.0 5.6e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100856|ref|YP_004176448.1| - 1.7e-13 51.1 0.5 1.1e-05 25.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100856|ref|YP_004176448.1| - 9.3e-08 31.8 0.2 1.9e-05 24.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|320100856|ref|YP_004176448.1| - 1.2e-05 25.3 0.0 0.00081 19.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|320100856|ref|YP_004176448.1| - 5.3e-05 22.9 0.0 9.6e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|320100856|ref|YP_004176448.1| - 0.00012 22.6 0.0 0.00019 22.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|320100856|ref|YP_004176448.1| - 0.00028 21.3 0.1 0.00063 20.2 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF3584 PF12128.8 gi|320100856|ref|YP_004176448.1| - 0.0019 15.8 0.1 0.0026 15.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_22 PF13401.6 gi|320100856|ref|YP_004176448.1| - 0.0031 17.8 0.3 0.024 14.9 0.3 2.1 1 1 0 1 1 1 1 AAA domain RNA12 PF10443.9 gi|320100856|ref|YP_004176448.1| - 0.0054 15.5 0.0 0.008 14.9 0.0 1.2 1 0 0 1 1 1 1 RNA12 protein AFG1_ATPase PF03969.16 gi|320100856|ref|YP_004176448.1| - 0.0078 15.1 0.0 0.022 13.6 0.0 1.6 2 0 0 2 2 2 1 AFG1-like ATPase ATPase_2 PF01637.18 gi|320100856|ref|YP_004176448.1| - 0.013 15.4 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea cobW PF02492.19 gi|320100856|ref|YP_004176448.1| - 0.014 15.0 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|320100856|ref|YP_004176448.1| - 0.015 15.5 0.0 0.03 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|320100856|ref|YP_004176448.1| - 0.016 14.0 0.1 2.7 6.7 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.29 gi|320100856|ref|YP_004176448.1| - 0.019 15.4 0.0 0.41 11.1 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|320100856|ref|YP_004176448.1| - 0.024 13.3 0.0 2.2 6.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|320100856|ref|YP_004176448.1| - 0.03 14.6 0.1 0.53 10.5 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.14 gi|320100856|ref|YP_004176448.1| - 0.032 14.1 0.2 0.22 11.4 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.14 gi|320100856|ref|YP_004176448.1| - 0.064 13.2 0.1 0.62 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF5591 PF17884.1 gi|320100856|ref|YP_004176448.1| - 0.075 12.9 0.1 0.25 11.2 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF5591) DUF87 PF01935.17 gi|320100856|ref|YP_004176448.1| - 0.076 13.1 0.0 0.094 12.8 0.0 1.3 1 1 0 1 1 1 0 Helicase HerA, central domain T2SSE PF00437.20 gi|320100856|ref|YP_004176448.1| - 0.076 12.1 0.1 0.13 11.2 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|320100856|ref|YP_004176448.1| - 0.082 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|320100856|ref|YP_004176448.1| - 0.087 12.9 0.0 0.17 11.9 0.0 1.6 1 1 1 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|320100856|ref|YP_004176448.1| - 0.14 11.9 0.1 0.41 10.4 0.1 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.12 gi|320100856|ref|YP_004176448.1| - 0.19 11.6 0.1 0.45 10.4 0.1 1.6 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|320100856|ref|YP_004176448.1| - 0.19 11.0 0.0 0.33 10.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|320100856|ref|YP_004176448.1| - 0.2 11.4 0.1 0.72 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain TBP PF00352.21 gi|320100857|ref|YP_004176449.1| - 2.1e-55 184.6 0.1 1.2e-26 92.5 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|320100857|ref|YP_004176449.1| - 4.7e-07 29.8 0.0 0.041 14.0 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Spore_YhaL PF14147.6 gi|320100857|ref|YP_004176449.1| - 0.044 13.5 1.3 0.19 11.4 0.1 2.5 3 0 0 3 3 3 0 Sporulation protein YhaL DUF4865 PF16157.5 gi|320100857|ref|YP_004176449.1| - 0.084 12.9 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4865) DUF2070 PF09843.9 gi|320100858|ref|YP_004176450.1| - 5.3e-93 312.2 0.2 6.6e-93 311.9 0.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) ATP_bind_1 PF03029.17 gi|320100860|ref|YP_004176452.1| - 1.7e-38 132.8 0.0 1.9e-38 132.6 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|320100860|ref|YP_004176452.1| - 0.0025 18.1 0.0 0.0047 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|320100860|ref|YP_004176452.1| - 0.0025 18.2 0.0 0.0051 17.2 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|320100860|ref|YP_004176452.1| - 0.006 16.3 0.0 0.0093 15.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|320100860|ref|YP_004176452.1| - 0.011 15.4 0.0 0.05 13.2 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|320100860|ref|YP_004176452.1| - 0.013 15.2 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|320100860|ref|YP_004176452.1| - 0.014 15.3 0.0 0.17 11.7 0.0 2.1 1 1 0 1 1 1 0 NTPase MMR_HSR1 PF01926.23 gi|320100860|ref|YP_004176452.1| - 0.02 15.0 0.0 0.26 11.4 0.0 2.5 1 1 0 2 2 2 0 50S ribosome-binding GTPase MeaB PF03308.16 gi|320100860|ref|YP_004176452.1| - 0.039 12.9 0.0 0.92 8.4 0.0 2.5 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_29 PF13555.6 gi|320100860|ref|YP_004176452.1| - 0.045 13.5 0.0 0.085 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|320100860|ref|YP_004176452.1| - 0.064 13.2 0.2 1.4 8.8 0.1 2.9 3 1 1 4 4 4 0 RsgA GTPase AAA_5 PF07728.14 gi|320100860|ref|YP_004176452.1| - 0.066 13.2 0.0 0.17 11.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|320100860|ref|YP_004176452.1| - 0.074 12.7 0.0 4.7 6.8 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PduV-EutP PF10662.9 gi|320100860|ref|YP_004176452.1| - 0.076 12.8 0.1 2.2 8.0 0.0 2.9 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.29 gi|320100860|ref|YP_004176452.1| - 0.098 13.1 0.0 0.26 11.7 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|320100860|ref|YP_004176452.1| - 0.11 11.5 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|320100860|ref|YP_004176452.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|320100860|ref|YP_004176452.1| - 0.16 12.1 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|320100860|ref|YP_004176452.1| - 0.18 11.6 0.0 0.55 10.0 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PhoH PF02562.16 gi|320100860|ref|YP_004176452.1| - 0.24 10.8 0.0 0.47 9.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DNA_ligase_A_M PF01068.21 gi|320100861|ref|YP_004176453.1| - 8.6e-64 214.9 0.1 1.2e-63 214.4 0.1 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|320100861|ref|YP_004176453.1| - 1.5e-40 139.3 0.5 8e-40 137.0 0.0 2.2 3 0 0 3 3 3 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|320100861|ref|YP_004176453.1| - 4.4e-27 94.6 0.0 8.7e-26 90.4 0.0 2.4 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|320100861|ref|YP_004176453.1| - 3.2e-05 24.3 1.0 5.3e-05 23.6 1.0 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|320100861|ref|YP_004176453.1| - 0.0012 18.8 0.4 0.12 12.4 0.0 3.0 3 0 0 3 3 3 1 DNA ligase OB-like domain HTH_6 PF01418.17 gi|320100861|ref|YP_004176453.1| - 0.14 12.1 0.2 3.6 7.6 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Lon_C PF05362.13 gi|320100862|ref|YP_004176454.1| - 2.5e-05 23.9 0.8 4.1e-05 23.2 0.8 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain UDG PF03167.19 gi|320100863|ref|YP_004176455.1| - 3.2e-47 160.4 0.0 4.2e-47 160.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily GtrA PF04138.14 gi|320100864|ref|YP_004176456.1| - 1.9e-19 70.0 5.6 2.8e-19 69.5 5.6 1.3 1 0 0 1 1 1 1 GtrA-like protein DUF5622 PF18533.1 gi|320100865|ref|YP_004176457.1| - 3.3e-26 91.2 0.6 3.6e-26 91.1 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) DUF553 PF04473.12 gi|320100867|ref|YP_004176459.1| - 5.9e-24 84.4 0.7 1.1e-22 80.3 0.7 2.3 1 1 0 1 1 1 1 Transglutaminase-like domain Peptidase_C93 PF06035.11 gi|320100867|ref|YP_004176459.1| - 0.004 17.0 0.0 0.01 15.6 0.0 1.7 1 1 0 1 1 1 1 Bacterial transglutaminase-like cysteine proteinase BTLCP Transglut_core PF01841.19 gi|320100867|ref|YP_004176459.1| - 0.038 14.5 0.0 0.1 13.1 0.0 1.7 1 0 0 1 1 1 0 Transglutaminase-like superfamily OrfB_IS605 PF01385.19 gi|320100868|ref|YP_004176460.1| - 9.5e-34 116.2 0.0 1.7e-33 115.4 0.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|320100868|ref|YP_004176460.1| - 2.2e-19 69.1 0.0 4.6e-19 68.1 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvX PF03652.15 gi|320100868|ref|YP_004176460.1| - 0.01 16.2 0.0 0.022 15.1 0.0 1.5 1 0 0 1 1 1 0 Holliday junction resolvase MFS_1 PF07690.16 gi|320100869|ref|YP_004176461.1| - 5.3e-26 91.4 45.7 7.4e-26 90.9 45.7 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Beta_propel PF09826.9 gi|320100870|ref|YP_004176462.1| - 2e-103 347.0 0.1 2.4e-103 346.7 0.1 1.0 1 0 0 1 1 1 1 Beta propeller domain LVIVD PF08309.11 gi|320100870|ref|YP_004176462.1| - 0.0068 15.7 0.2 0.9 8.9 0.0 3.7 3 0 0 3 3 3 1 LVIVD repeat CDC24 PF06395.11 gi|320100870|ref|YP_004176462.1| - 0.18 12.0 0.1 0.66 10.3 0.0 1.9 2 0 0 2 2 2 0 CDC24 Calponin TrmB PF01978.19 gi|320100871|ref|YP_004176463.1| - 4.2e-11 42.6 0.4 6.4e-11 42.0 0.4 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|320100871|ref|YP_004176463.1| - 1.6e-10 40.4 0.0 2.7e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|320100871|ref|YP_004176463.1| - 5.9e-10 38.8 0.0 1.1e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|320100871|ref|YP_004176463.1| - 5.5e-06 26.2 0.0 1.2e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|320100871|ref|YP_004176463.1| - 5.6e-06 26.8 0.1 9e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|320100871|ref|YP_004176463.1| - 1.1e-05 25.4 0.0 1.8e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|320100871|ref|YP_004176463.1| - 1.5e-05 24.8 0.0 2.4e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|320100871|ref|YP_004176463.1| - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain MarR PF01047.22 gi|320100871|ref|YP_004176463.1| - 0.0024 17.7 0.0 0.004 17.0 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|320100871|ref|YP_004176463.1| - 0.0057 16.8 0.1 0.01 16.0 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|320100871|ref|YP_004176463.1| - 0.008 16.5 0.0 0.013 15.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_38 PF13936.6 gi|320100871|ref|YP_004176463.1| - 0.011 15.5 0.1 0.057 13.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|320100871|ref|YP_004176463.1| - 0.017 14.8 0.1 0.069 12.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 DUF1478 PF07349.11 gi|320100871|ref|YP_004176463.1| - 0.018 14.9 2.4 0.021 14.7 2.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1478) HTH_12 PF08461.10 gi|320100871|ref|YP_004176463.1| - 0.02 14.8 0.1 0.065 13.2 0.1 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain TBPIP PF07106.13 gi|320100871|ref|YP_004176463.1| - 0.026 14.4 0.1 1.1 9.2 0.1 2.1 1 1 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_23 PF13384.6 gi|320100871|ref|YP_004176463.1| - 0.027 14.3 0.1 0.11 12.3 0.0 2.0 3 0 0 3 3 3 0 Homeodomain-like domain FeoC PF09012.10 gi|320100871|ref|YP_004176463.1| - 0.046 13.8 0.0 0.075 13.1 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Penicillinase_R PF03965.16 gi|320100871|ref|YP_004176463.1| - 0.056 13.8 0.0 0.077 13.4 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor B-block_TFIIIC PF04182.12 gi|320100871|ref|YP_004176463.1| - 0.076 13.2 0.1 0.19 11.9 0.0 1.8 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_AsnC-type PF13404.6 gi|320100871|ref|YP_004176463.1| - 0.079 12.8 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF742 PF05331.11 gi|320100871|ref|YP_004176463.1| - 0.092 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_40 PF14493.6 gi|320100871|ref|YP_004176463.1| - 0.1 13.1 0.0 0.27 11.7 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain Ubiq-assoc PF09145.10 gi|320100871|ref|YP_004176463.1| - 0.11 12.5 1.8 0.23 11.5 1.8 1.5 1 0 0 1 1 1 0 Ubiquitin-associated DUF131 PF01998.17 gi|320100872|ref|YP_004176464.1| - 3.3e-12 45.8 2.4 3.3e-12 45.8 2.4 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 CD20 PF04103.15 gi|320100872|ref|YP_004176464.1| - 0.0009 19.4 4.4 0.00098 19.2 4.4 1.0 1 0 0 1 1 1 1 CD20-like family Trp_oprn_chp PF09534.10 gi|320100872|ref|YP_004176464.1| - 0.98 9.2 4.8 3.5 7.4 0.6 2.1 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) LapA_dom PF06305.11 gi|320100873|ref|YP_004176465.1| - 0.03 14.1 2.3 0.03 14.1 2.3 2.7 2 1 1 3 3 3 0 Lipopolysaccharide assembly protein A domain Peptidase_U4 PF03419.13 gi|320100873|ref|YP_004176465.1| - 0.53 9.5 3.4 0.59 9.4 3.4 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA TssN PF17555.2 gi|320100873|ref|YP_004176465.1| - 4.4 6.6 4.7 0.92 8.8 0.9 1.5 1 1 0 1 1 1 0 Type VI secretion system, TssN Pyr_redox_2 PF07992.14 gi|320100874|ref|YP_004176466.1| - 8.9e-63 212.2 3.0 1.3e-62 211.7 3.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|320100874|ref|YP_004176466.1| - 3.6e-21 75.5 6.5 5.7e-18 65.3 0.0 3.7 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|320100874|ref|YP_004176466.1| - 1.1e-18 67.5 0.1 3.9e-18 65.7 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|320100874|ref|YP_004176466.1| - 1.5e-13 50.7 0.9 1.3e-12 47.6 0.8 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|320100874|ref|YP_004176466.1| - 1.1e-06 28.1 0.3 2.9e-06 26.7 0.3 1.7 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|320100874|ref|YP_004176466.1| - 2.3e-06 27.3 1.1 2.3e-06 27.3 1.1 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|320100874|ref|YP_004176466.1| - 7.4e-06 25.3 8.4 8.6e-05 21.8 1.3 2.7 2 1 1 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|320100874|ref|YP_004176466.1| - 9.1e-06 24.6 7.4 0.0014 17.4 0.0 3.1 2 1 1 3 3 3 2 HI0933-like protein DAO PF01266.24 gi|320100874|ref|YP_004176466.1| - 1.3e-05 25.0 15.4 0.076 12.6 3.3 3.9 3 1 0 4 4 4 3 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|320100874|ref|YP_004176466.1| - 1.5e-05 24.9 2.9 0.0031 17.4 0.0 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|320100874|ref|YP_004176466.1| - 3.7e-05 23.9 2.7 0.014 15.7 0.5 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|320100874|ref|YP_004176466.1| - 5.3e-05 22.5 2.4 5.3e-05 22.5 2.4 3.3 2 1 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|320100874|ref|YP_004176466.1| - 0.00035 19.9 8.3 0.037 13.3 0.7 2.9 2 1 1 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 gi|320100874|ref|YP_004176466.1| - 0.0025 18.2 0.4 0.48 10.9 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|320100874|ref|YP_004176466.1| - 0.0033 16.8 2.6 0.11 11.8 0.0 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|320100874|ref|YP_004176466.1| - 0.0039 16.6 0.5 0.97 8.7 0.1 2.2 2 0 0 2 2 2 2 ThiF family Amino_oxidase PF01593.24 gi|320100874|ref|YP_004176466.1| - 0.023 14.0 0.5 0.23 10.7 0.0 2.5 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase 2-Hacid_dh_C PF02826.19 gi|320100874|ref|YP_004176466.1| - 0.049 13.0 0.1 2.1 7.7 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|320100874|ref|YP_004176466.1| - 0.049 13.2 2.7 4 7.0 0.0 2.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.6 gi|320100874|ref|YP_004176466.1| - 0.13 12.2 7.6 0.14 12.2 0.0 3.6 3 1 1 4 4 4 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|320100874|ref|YP_004176466.1| - 0.31 10.0 6.8 3.2 6.7 0.4 2.9 2 1 1 3 3 3 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|320100874|ref|YP_004176466.1| - 0.31 9.8 7.8 0.14 11.0 0.4 2.8 3 0 0 3 3 3 0 Tryptophan halogenase GDC-P PF02347.16 gi|320100875|ref|YP_004176467.1| - 4.8e-11 42.2 0.0 1.3e-10 40.7 0.0 1.6 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|320100875|ref|YP_004176467.1| - 3.6e-08 32.8 0.0 7.5e-08 31.7 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|320100875|ref|YP_004176467.1| - 1.9e-05 24.1 0.0 3.6e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|320100875|ref|YP_004176467.1| - 0.0063 15.8 0.0 0.01 15.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|320100875|ref|YP_004176467.1| - 0.21 10.3 0.0 0.63 8.7 0.0 1.6 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain GDC-P PF02347.16 gi|320100876|ref|YP_004176468.1| - 1.4e-114 383.3 0.0 1.7e-114 383.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|320100876|ref|YP_004176468.1| - 0.00021 20.4 0.0 0.00055 19.0 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V GCV_T PF01571.21 gi|320100877|ref|YP_004176469.1| - 4.4e-64 216.3 0.0 5.8e-64 215.9 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|320100877|ref|YP_004176469.1| - 7.4e-21 73.9 0.0 1.5e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SHMT PF00464.19 gi|320100878|ref|YP_004176470.1| - 1.6e-66 224.5 0.0 2.1e-66 224.2 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|320100878|ref|YP_004176470.1| - 6.7e-10 38.7 0.0 2.6e-09 36.8 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|320100878|ref|YP_004176470.1| - 3e-09 36.6 0.0 6.8e-09 35.4 0.1 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|320100878|ref|YP_004176470.1| - 3.1e-05 23.1 0.2 4.9e-05 22.5 0.2 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|320100878|ref|YP_004176470.1| - 0.00015 21.2 0.4 0.00029 20.3 0.2 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|320100878|ref|YP_004176470.1| - 0.00053 18.6 0.2 0.002 16.7 0.1 1.9 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme XTBD PF11952.8 gi|320100878|ref|YP_004176470.1| - 0.052 13.3 0.6 0.51 10.1 0.1 2.3 2 0 0 2 2 2 0 XRN-Two Binding Domain, XTBD SelA PF03841.13 gi|320100878|ref|YP_004176470.1| - 0.088 11.8 0.0 0.2 10.6 0.0 1.5 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase GCV_H PF01597.19 gi|320100879|ref|YP_004176471.1| - 7.3e-41 138.9 0.3 8.9e-41 138.6 0.3 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|320100879|ref|YP_004176471.1| - 0.00022 21.1 0.1 0.00033 20.6 0.1 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|320100879|ref|YP_004176471.1| - 0.0069 16.2 1.0 0.01 15.6 0.3 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|320100879|ref|YP_004176471.1| - 0.065 13.1 0.1 15 5.5 0.0 2.3 2 0 0 2 2 2 0 Biotin-lipoyl like NQRA PF05896.11 gi|320100879|ref|YP_004176471.1| - 0.11 12.0 0.1 0.16 11.4 0.1 1.3 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DeoC PF01791.9 gi|320100880|ref|YP_004176472.1| - 6.7e-09 35.7 0.8 9.1e-09 35.3 0.8 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 gi|320100880|ref|YP_004176472.1| - 4.4e-05 22.9 1.3 6.8e-05 22.2 0.4 1.6 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase FMN_dh PF01070.18 gi|320100880|ref|YP_004176472.1| - 0.002 17.2 1.0 0.002 17.2 1.0 1.9 1 1 1 2 2 2 1 FMN-dependent dehydrogenase DUF5448 PF17526.2 gi|320100880|ref|YP_004176472.1| - 0.13 12.4 0.1 0.78 9.9 0.0 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5448) Spermine_synth PF01564.17 gi|320100881|ref|YP_004176473.1| - 4.4e-45 153.4 0.0 5.8e-45 153.0 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|320100881|ref|YP_004176473.1| - 5.9e-07 29.3 0.1 1.8e-06 27.7 0.1 1.9 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|320100881|ref|YP_004176473.1| - 7e-05 23.5 0.0 0.00016 22.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|320100881|ref|YP_004176473.1| - 0.00037 21.1 0.0 0.00075 20.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|320100881|ref|YP_004176473.1| - 0.0021 18.7 0.0 0.0052 17.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|320100881|ref|YP_004176473.1| - 0.087 12.1 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_23 PF13489.6 gi|320100881|ref|YP_004176473.1| - 0.14 12.0 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF2139 PF09910.9 gi|320100882|ref|YP_004176474.1| - 2e-153 510.5 0.0 2.4e-153 510.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) NfeD PF01957.18 gi|320100883|ref|YP_004176475.1| - 1.4e-09 38.2 3.4 1.4e-09 38.2 3.4 3.0 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|320100883|ref|YP_004176475.1| - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|320100883|ref|YP_004176475.1| - 0.054 12.5 0.1 0.11 11.4 0.0 1.5 2 0 0 2 2 2 0 Serine dehydrogenase proteinase HIG_1_N PF04588.13 gi|320100883|ref|YP_004176475.1| - 0.1 12.8 2.2 1.9 8.8 0.7 3.0 2 0 0 2 2 2 0 Hypoxia induced protein conserved region DUF4127 PF13552.6 gi|320100883|ref|YP_004176475.1| - 0.11 11.1 0.0 0.15 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) Band_7 PF01145.25 gi|320100884|ref|YP_004176476.1| - 5e-38 130.9 1.2 6.9e-38 130.4 1.2 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|320100884|ref|YP_004176476.1| - 0.00089 19.0 0.1 0.0014 18.4 0.1 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family ProSAAS PF07259.12 gi|320100884|ref|YP_004176476.1| - 0.0043 17.1 1.5 0.0043 17.1 1.5 1.6 2 0 0 2 2 2 1 ProSAAS precursor GFO_IDH_MocA PF01408.22 gi|320100884|ref|YP_004176476.1| - 0.13 13.1 0.2 0.26 12.1 0.2 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold EamA PF00892.20 gi|320100885|ref|YP_004176477.1| - 2.4e-18 66.6 27.2 7.2e-12 45.6 8.3 2.2 2 0 0 2 2 2 2 EamA-like transporter family DUF1427 PF07235.11 gi|320100885|ref|YP_004176477.1| - 7.7 6.6 8.5 3.2 7.8 2.0 3.4 3 2 1 4 4 4 0 Protein of unknown function (DUF1427) DUF402 PF04167.13 gi|320100886|ref|YP_004176478.1| - 4.7e-15 55.5 0.7 7.6e-15 54.9 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|320100886|ref|YP_004176478.1| - 5.5e-05 22.7 0.0 7.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family UPF0147 PF03685.13 gi|320100887|ref|YP_004176479.1| - 2.6e-34 117.1 0.7 2.9e-34 117.0 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HEAT_PBS PF03130.16 gi|320100887|ref|YP_004176479.1| - 0.092 13.5 0.2 0.3 11.9 0.2 2.0 2 1 0 2 2 2 0 PBS lyase HEAT-like repeat UPF0253 PF06786.12 gi|320100887|ref|YP_004176479.1| - 0.12 12.7 0.3 8.1 6.8 0.1 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.12 gi|320100888|ref|YP_004176480.1| - 1.7e-12 47.3 0.3 2.3e-12 46.8 0.3 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Thymidylate_kin PF02223.17 gi|320100889|ref|YP_004176481.1| - 8e-40 136.5 0.0 9.1e-40 136.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|320100889|ref|YP_004176481.1| - 1.5e-06 28.2 0.0 2e-05 24.5 0.0 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|320100889|ref|YP_004176481.1| - 5.8e-06 26.9 0.0 1.1e-05 26.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|320100889|ref|YP_004176481.1| - 5.2e-05 23.5 0.0 8.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|320100889|ref|YP_004176481.1| - 7.5e-05 23.0 0.0 0.0001 22.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|320100889|ref|YP_004176481.1| - 0.00011 22.7 0.0 0.00087 19.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|320100889|ref|YP_004176481.1| - 0.00078 19.6 0.0 0.001 19.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|320100889|ref|YP_004176481.1| - 0.0017 18.3 0.0 0.004 17.0 0.0 1.7 2 0 0 2 2 1 1 Adenylylsulphate kinase Arf PF00025.21 gi|320100889|ref|YP_004176481.1| - 0.003 17.0 0.0 0.0042 16.5 0.0 1.2 1 0 0 1 1 1 1 ADP-ribosylation factor family PPK2 PF03976.14 gi|320100889|ref|YP_004176481.1| - 0.0035 16.9 0.0 0.0066 16.0 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) LytR_C PF13399.6 gi|320100889|ref|YP_004176481.1| - 0.0083 17.1 0.0 0.014 16.4 0.0 1.4 1 0 0 1 1 1 1 LytR cell envelope-related transcriptional attenuator NTPase_1 PF03266.15 gi|320100889|ref|YP_004176481.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 NTPase NACHT PF05729.12 gi|320100889|ref|YP_004176481.1| - 0.021 14.8 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 gi|320100889|ref|YP_004176481.1| - 0.023 14.6 0.2 0.038 13.9 0.0 1.5 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea DUF244 PF03112.14 gi|320100889|ref|YP_004176481.1| - 0.031 14.1 0.2 0.077 12.8 0.2 1.6 1 1 0 1 1 1 0 Uncharacterized protein family (ORF7) DUF AAA_16 PF13191.6 gi|320100889|ref|YP_004176481.1| - 0.037 14.4 0.0 0.051 14.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.14 gi|320100889|ref|YP_004176481.1| - 0.046 13.6 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SKI PF01202.22 gi|320100889|ref|YP_004176481.1| - 0.051 13.7 0.0 9.4 6.3 0.0 2.2 2 0 0 2 2 2 0 Shikimate kinase PRK PF00485.18 gi|320100889|ref|YP_004176481.1| - 0.057 13.1 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family KAP_NTPase PF07693.14 gi|320100889|ref|YP_004176481.1| - 0.087 12.1 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain CP_ATPgrasp_1 PF04174.13 gi|320100889|ref|YP_004176481.1| - 0.092 11.7 0.2 0.24 10.4 0.0 1.6 2 0 0 2 2 2 0 A circularly permuted ATPgrasp AAA_30 PF13604.6 gi|320100889|ref|YP_004176481.1| - 0.1 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|320100889|ref|YP_004176481.1| - 0.14 11.8 0.0 0.34 10.5 0.0 1.6 2 0 0 2 2 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|320100889|ref|YP_004176481.1| - 0.16 12.4 0.0 0.27 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|320100889|ref|YP_004176481.1| - 0.16 11.3 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin TsaE PF02367.17 gi|320100889|ref|YP_004176481.1| - 0.16 12.0 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF126 PF01989.16 gi|320100890|ref|YP_004176482.1| - 6.3e-27 93.2 0.2 8.5e-27 92.8 0.2 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain DUF521 PF04412.13 gi|320100891|ref|YP_004176483.1| - 5.2e-115 384.4 0.0 5.8e-115 384.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.16 gi|320100892|ref|YP_004176484.1| - 1e-65 222.2 0.0 1.3e-65 221.9 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase O_Spanin_T7 PF17531.2 gi|320100892|ref|YP_004176484.1| - 0.12 12.5 0.1 18 5.5 0.1 2.4 2 0 0 2 2 2 0 outer-membrane spanin sub-unit CLP1_P PF16575.5 gi|320100893|ref|YP_004176485.1| - 1.6e-36 125.9 0.0 2.4e-36 125.3 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|320100893|ref|YP_004176485.1| - 0.034 13.9 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|320100893|ref|YP_004176485.1| - 0.087 12.4 0.2 0.14 11.6 0.2 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Rad51 PF08423.11 gi|320100895|ref|YP_004176487.1| - 7.9e-07 28.6 0.2 0.00012 21.5 0.2 2.7 1 1 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|320100895|ref|YP_004176487.1| - 1.3e-05 24.7 0.0 0.0002 20.8 0.0 2.2 1 1 1 2 2 2 1 KaiC AAA_25 PF13481.6 gi|320100895|ref|YP_004176487.1| - 0.00036 20.2 0.0 0.0027 17.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|320100895|ref|YP_004176487.1| - 0.00053 19.8 0.0 0.0018 18.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|320100895|ref|YP_004176487.1| - 0.00074 19.9 0.0 0.00087 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|320100895|ref|YP_004176487.1| - 0.0076 16.8 0.0 0.011 16.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_30 PF13604.6 gi|320100895|ref|YP_004176487.1| - 0.013 15.2 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|320100895|ref|YP_004176487.1| - 0.028 14.2 0.5 0.055 13.2 0.5 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.18 gi|320100895|ref|YP_004176487.1| - 0.035 13.8 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.6 gi|320100895|ref|YP_004176487.1| - 0.042 14.3 0.5 0.068 13.7 0.5 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|320100895|ref|YP_004176487.1| - 0.044 14.2 0.0 0.096 13.1 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|320100895|ref|YP_004176487.1| - 0.045 13.3 0.1 0.078 12.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|320100895|ref|YP_004176487.1| - 0.045 13.7 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|320100895|ref|YP_004176487.1| - 0.047 13.7 0.0 0.057 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Kinesin PF00225.23 gi|320100895|ref|YP_004176487.1| - 0.083 11.8 0.1 0.12 11.2 0.1 1.3 1 0 0 1 1 1 0 Kinesin motor domain RsgA_GTPase PF03193.16 gi|320100895|ref|YP_004176487.1| - 0.11 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 gi|320100895|ref|YP_004176487.1| - 0.11 12.5 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|320100895|ref|YP_004176487.1| - 0.14 12.3 0.2 0.27 11.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|320100895|ref|YP_004176487.1| - 0.14 12.0 0.0 0.2 11.5 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|320100895|ref|YP_004176487.1| - 0.17 11.5 0.1 0.24 11.0 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain cobW PF02492.19 gi|320100895|ref|YP_004176487.1| - 0.21 11.2 0.0 0.29 10.7 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|320100895|ref|YP_004176487.1| - 0.24 10.4 0.1 0.41 9.7 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein CarS-like PF01864.17 gi|320100896|ref|YP_004176488.1| - 2e-33 115.9 6.8 9e-33 113.7 6.8 1.8 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|320100896|ref|YP_004176488.1| - 4.2e-07 30.0 1.0 4.2e-07 30.0 1.0 2.1 1 1 1 2 2 2 2 Cytidylyltransferase family UPF0051 PF01458.17 gi|320100897|ref|YP_004176489.1| - 8.9e-45 153.0 1.0 1.8e-44 152.0 0.1 1.7 2 0 0 2 2 2 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|320100898|ref|YP_004176490.1| - 1.5e-20 74.2 0.0 2e-20 73.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100898|ref|YP_004176490.1| - 3.1e-11 43.7 0.6 5.9e-06 26.3 0.2 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100898|ref|YP_004176490.1| - 7.3e-08 32.1 0.0 0.0024 17.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|320100898|ref|YP_004176490.1| - 0.0001 22.0 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|320100898|ref|YP_004176490.1| - 0.00024 20.8 0.0 0.00048 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|320100898|ref|YP_004176490.1| - 0.0035 17.9 0.0 0.0051 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|320100898|ref|YP_004176490.1| - 0.011 15.3 0.0 0.078 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|320100898|ref|YP_004176490.1| - 0.017 15.4 0.2 0.51 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|320100898|ref|YP_004176490.1| - 0.02 14.8 0.1 0.036 14.0 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|320100898|ref|YP_004176490.1| - 0.03 14.0 0.0 0.25 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|320100898|ref|YP_004176490.1| - 0.031 14.2 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.6 gi|320100898|ref|YP_004176490.1| - 0.052 13.3 0.0 0.18 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|320100898|ref|YP_004176490.1| - 0.065 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|320100898|ref|YP_004176490.1| - 0.067 13.6 0.1 0.13 12.6 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain ATPase_2 PF01637.18 gi|320100898|ref|YP_004176490.1| - 0.14 12.1 0.0 0.32 10.9 0.0 1.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea cobW PF02492.19 gi|320100898|ref|YP_004176490.1| - 0.22 11.1 0.3 0.56 9.8 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Adeno_IVa2 PF02456.15 gi|320100898|ref|YP_004176490.1| - 0.28 9.9 0.0 0.38 9.5 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein P5CR_dimer PF14748.6 gi|320100900|ref|YP_004176492.1| - 9.9e-31 106.1 0.0 1.7e-30 105.3 0.0 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|320100900|ref|YP_004176492.1| - 1.1e-18 67.6 0.1 1.8e-18 66.9 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|320100900|ref|YP_004176492.1| - 0.0001 22.0 0.2 0.00031 20.4 0.2 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|320100900|ref|YP_004176492.1| - 0.00058 19.9 1.3 0.028 14.4 1.0 2.5 1 1 1 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|320100900|ref|YP_004176492.1| - 0.00059 19.3 0.0 0.00093 18.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|320100900|ref|YP_004176492.1| - 0.0015 18.1 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|320100900|ref|YP_004176492.1| - 0.0063 16.6 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|320100900|ref|YP_004176492.1| - 0.013 15.6 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DapB_N PF01113.20 gi|320100900|ref|YP_004176492.1| - 0.014 15.5 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ADH_zinc_N PF00107.26 gi|320100900|ref|YP_004176492.1| - 0.049 13.6 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|320100900|ref|YP_004176492.1| - 0.065 13.5 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain KR PF08659.10 gi|320100900|ref|YP_004176492.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 KR domain DEAD_assoc PF08494.11 gi|320100901|ref|YP_004176493.1| - 1.1e-51 175.4 0.0 1.9e-51 174.6 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|320100901|ref|YP_004176493.1| - 1.7e-27 96.3 0.0 1e-26 93.8 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|320100901|ref|YP_004176493.1| - 5.9e-16 58.8 0.7 1.8e-15 57.2 0.7 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|320100901|ref|YP_004176493.1| - 5e-10 39.6 0.0 1e-08 35.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|320100901|ref|YP_004176493.1| - 0.02 15.3 3.3 5 7.6 0.5 3.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|320100901|ref|YP_004176493.1| - 0.093 13.1 0.0 0.98 9.8 0.0 2.5 2 0 0 2 2 2 0 AAA ATPase domain SNF2_N PF00176.23 gi|320100901|ref|YP_004176493.1| - 0.2 10.3 0.0 1 8.0 0.0 2.1 1 1 0 1 1 1 0 SNF2 family N-terminal domain Glyco_trans_2_3 PF13632.6 gi|320100902|ref|YP_004176494.1| - 3.1e-19 69.7 0.6 3.1e-19 69.7 0.6 2.0 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|320100902|ref|YP_004176494.1| - 6.5e-17 62.2 0.0 9.4e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|320100902|ref|YP_004176494.1| - 1.3e-13 51.2 0.0 1.8e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|320100902|ref|YP_004176494.1| - 7.1e-06 25.6 0.0 0.0029 17.1 0.0 2.5 2 1 1 3 3 3 2 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|320100902|ref|YP_004176494.1| - 0.0004 20.9 0.0 0.00081 19.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 RNR_inhib PF08591.10 gi|320100902|ref|YP_004176494.1| - 0.13 13.6 0.0 0.23 12.8 0.0 1.3 1 0 0 1 1 1 0 Ribonucleotide reductase inhibitor Lactamase_B_3 PF13483.6 gi|320100903|ref|YP_004176495.1| - 2.8e-40 137.9 0.1 4.4e-40 137.2 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|320100903|ref|YP_004176495.1| - 2.1e-13 50.3 1.6 4.8e-09 36.0 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain PfkB PF00294.24 gi|320100906|ref|YP_004176498.1| - 1.8e-05 24.2 0.0 2.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase IL2 PF00715.17 gi|320100906|ref|YP_004176498.1| - 0.094 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Interleukin 2 Thioredoxin_3 PF13192.6 gi|320100907|ref|YP_004176499.1| - 1.7e-05 24.7 0.0 2.8e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain tRNA-synt_2b PF00587.25 gi|320100908|ref|YP_004176500.1| - 1.9e-30 106.2 0.0 3.1e-30 105.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|320100908|ref|YP_004176500.1| - 5.7e-21 74.8 4.6 1e-20 73.9 4.6 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain FeS_assembly_P PF01883.19 gi|320100909|ref|YP_004176501.1| - 9.4e-17 61.0 0.5 1.3e-16 60.6 0.5 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Viral_DNA_bi PF02236.17 gi|320100910|ref|YP_004176502.1| - 0.019 15.2 0.0 0.03 14.5 0.0 1.4 1 0 0 1 1 1 0 Viral DNA-binding protein, all alpha domain PTH2 PF01981.16 gi|320100910|ref|YP_004176502.1| - 0.041 14.2 0.0 0.044 14.1 0.0 1.1 1 0 0 1 1 1 0 Peptidyl-tRNA hydrolase PTH2 PI3K_rbd PF00794.18 gi|320100910|ref|YP_004176502.1| - 0.15 12.2 0.0 3.4 7.9 0.0 2.0 1 1 1 2 2 2 0 PI3-kinase family, ras-binding domain IF-2B PF01008.17 gi|320100911|ref|YP_004176503.1| - 1.8e-87 293.1 0.6 2.1e-87 292.9 0.6 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Pyrid_oxidase_2 PF13883.6 gi|320100911|ref|YP_004176503.1| - 0.098 12.6 0.0 0.93 9.4 0.0 2.2 2 0 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase IF-2B PF01008.17 gi|320100912|ref|YP_004176504.1| - 8e-53 179.5 0.0 1e-52 179.1 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family ATP-synt_ab PF00006.25 gi|320100912|ref|YP_004176504.1| - 0.085 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_26 PF13500.6 gi|320100913|ref|YP_004176505.1| - 3.5e-07 30.2 0.1 6.2e-05 22.9 0.0 2.5 2 1 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|320100913|ref|YP_004176505.1| - 0.18 11.9 0.0 0.7 10.0 0.0 1.8 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF4201 PF13870.6 gi|320100914|ref|YP_004176506.1| - 0.0046 16.7 0.3 0.0062 16.3 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) EzrA PF06160.12 gi|320100914|ref|YP_004176506.1| - 0.041 12.1 0.9 0.058 11.6 0.9 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Cluap1 PF10234.9 gi|320100914|ref|YP_004176506.1| - 0.043 13.2 0.7 0.063 12.7 0.7 1.1 1 0 0 1 1 1 0 Clusterin-associated protein-1 Tropomyosin PF00261.20 gi|320100914|ref|YP_004176506.1| - 0.044 13.2 0.1 0.061 12.7 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin Spc7 PF08317.11 gi|320100914|ref|YP_004176506.1| - 0.052 12.4 1.2 0.077 11.9 1.2 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Nup54 PF13874.6 gi|320100914|ref|YP_004176506.1| - 0.081 13.0 0.2 0.13 12.4 0.2 1.2 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 GAT PF03127.14 gi|320100914|ref|YP_004176506.1| - 0.14 12.5 3.0 0.22 11.8 3.0 1.3 1 0 0 1 1 1 0 GAT domain YabA PF06156.13 gi|320100914|ref|YP_004176506.1| - 0.14 12.8 0.3 0.22 12.2 0.3 1.2 1 0 0 1 1 1 0 Initiation control protein YabA V-SNARE PF05008.15 gi|320100914|ref|YP_004176506.1| - 0.14 12.5 0.5 0.21 12.0 0.5 1.2 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus HAUS-augmin3 PF14932.6 gi|320100914|ref|YP_004176506.1| - 0.15 11.6 1.3 0.22 11.1 1.3 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 CENP-F_leu_zip PF10473.9 gi|320100914|ref|YP_004176506.1| - 0.21 11.6 1.1 0.31 11.1 1.1 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 SlyX PF04102.12 gi|320100914|ref|YP_004176506.1| - 0.22 12.2 0.2 0.41 11.3 0.2 1.4 1 0 0 1 1 1 0 SlyX TMF_DNA_bd PF12329.8 gi|320100914|ref|YP_004176506.1| - 0.24 11.4 3.6 0.36 10.8 3.6 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding COG6 PF06419.11 gi|320100914|ref|YP_004176506.1| - 0.3 9.3 2.8 0.42 8.8 2.8 1.1 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 Tropomyosin_1 PF12718.7 gi|320100914|ref|YP_004176506.1| - 0.4 10.8 1.5 0.61 10.2 1.5 1.1 1 0 0 1 1 1 0 Tropomyosin like ADIP PF11559.8 gi|320100914|ref|YP_004176506.1| - 0.43 10.7 3.9 0.63 10.1 3.9 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2415 PF10313.9 gi|320100915|ref|YP_004176507.1| - 0.098 12.6 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein domain (DUF2415) YbgT_YccB PF08173.11 gi|320100915|ref|YP_004176507.1| - 0.16 12.2 0.2 0.16 12.2 0.2 1.8 2 0 0 2 2 2 0 Membrane bound YbgT-like protein SSF PF00474.17 gi|320100916|ref|YP_004176508.1| - 2.8e-48 164.8 29.8 4.2e-48 164.2 29.8 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family YdjM PF04307.14 gi|320100918|ref|YP_004176510.1| - 1.4e-18 66.8 10.2 4.4e-17 61.9 10.2 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Rib_5-P_isom_A PF06026.14 gi|320100919|ref|YP_004176511.1| - 8.8e-49 165.4 0.0 1.1e-48 165.2 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Peptidase_M55 PF04951.13 gi|320100920|ref|YP_004176512.1| - 3.9e-88 295.3 0.0 4.4e-88 295.1 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Creatininase PF02633.14 gi|320100920|ref|YP_004176512.1| - 0.097 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Creatinine amidohydrolase HD_3 PF13023.6 gi|320100921|ref|YP_004176513.1| - 6.5e-17 61.9 0.0 1.9e-16 60.5 0.0 1.7 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|320100921|ref|YP_004176513.1| - 8.2e-13 48.5 0.0 1.1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|320100921|ref|YP_004176513.1| - 7e-06 26.3 0.5 2.2e-05 24.7 0.5 1.8 1 1 0 1 1 1 1 HD domain PYC_OADA PF02436.18 gi|320100922|ref|YP_004176514.1| - 1e-52 178.8 0.0 1.9e-52 177.9 0.0 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|320100922|ref|YP_004176514.1| - 5.3e-42 144.2 0.0 7.4e-42 143.7 0.0 1.2 1 0 0 1 1 1 1 HMGL-like ADH_zinc_N PF00107.26 gi|320100922|ref|YP_004176514.1| - 0.06 13.3 0.1 12 5.9 0.0 2.9 2 1 1 3 3 3 0 Zinc-binding dehydrogenase DUF561 PF04481.12 gi|320100922|ref|YP_004176514.1| - 0.064 12.4 0.1 2 7.5 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF561) Aminotran_1_2 PF00155.21 gi|320100923|ref|YP_004176515.1| - 1.5e-48 165.8 0.0 1.8e-48 165.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|320100923|ref|YP_004176515.1| - 0.018 13.9 0.0 0.2 10.4 0.0 2.1 1 1 1 2 2 2 0 Alanine-glyoxylate amino-transferase Cys_Met_Meta_PP PF01053.20 gi|320100923|ref|YP_004176515.1| - 0.042 12.4 0.0 0.062 11.8 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DUF1743 PF08489.11 gi|320100924|ref|YP_004176516.1| - 9.8e-37 125.6 0.0 1.6e-36 124.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.11 gi|320100924|ref|YP_004176516.1| - 0.0029 17.5 2.1 0.0061 16.4 2.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|320100924|ref|YP_004176516.1| - 0.24 11.4 1.4 0.47 10.5 1.4 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|320100924|ref|YP_004176516.1| - 0.31 11.0 4.2 0.66 10.0 4.2 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DS PF01916.17 gi|320100925|ref|YP_004176517.1| - 1.6e-101 339.4 0.0 1.9e-101 339.1 0.0 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase Mrr_cat PF04471.12 gi|320100926|ref|YP_004176518.1| - 3e-05 24.0 0.0 5.1e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease NERD PF08378.11 gi|320100926|ref|YP_004176518.1| - 0.00034 21.0 0.0 0.00057 20.3 0.0 1.4 1 0 0 1 1 1 1 Nuclease-related domain DUF3136 PF11334.8 gi|320100926|ref|YP_004176518.1| - 0.053 13.3 0.1 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3136) PCNA_N PF00705.18 gi|320100927|ref|YP_004176519.1| - 1.4e-11 44.2 0.1 2.1e-10 40.4 0.0 2.2 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|320100927|ref|YP_004176519.1| - 5.9e-11 42.6 0.6 3.8e-08 33.6 0.1 2.9 3 0 0 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|320100927|ref|YP_004176519.1| - 1.2e-06 28.2 0.1 2.3e-05 24.0 0.0 2.5 2 1 1 3 3 3 1 Rad9 Rad1 PF02144.16 gi|320100927|ref|YP_004176519.1| - 0.00015 20.9 0.1 0.22 10.6 0.0 2.1 1 1 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 HTH_46 PF15977.5 gi|320100927|ref|YP_004176519.1| - 0.021 14.8 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding VIGSSK PF14773.6 gi|320100927|ref|YP_004176519.1| - 0.14 12.3 1.2 2.4 8.3 0.0 2.8 3 0 0 3 3 3 0 Helicase-associated putative binding domain, C-terminal PhoH PF02562.16 gi|320100929|ref|YP_004176521.1| - 1.2e-45 155.5 0.0 1.6e-45 155.1 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|320100929|ref|YP_004176521.1| - 5.4e-07 29.4 2.1 2.5e-05 24.0 0.6 2.5 1 1 1 2 2 2 1 KH domain KH_1 PF00013.29 gi|320100929|ref|YP_004176521.1| - 6.2e-07 29.2 0.1 0.00025 20.8 0.1 2.7 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|320100929|ref|YP_004176521.1| - 1.9e-05 24.6 0.2 0.01 15.9 0.0 2.7 2 0 0 2 2 2 2 NusA-like KH domain ABC_tran PF00005.27 gi|320100929|ref|YP_004176521.1| - 0.11 13.1 0.0 0.24 11.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Terminase_GpA PF05876.12 gi|320100929|ref|YP_004176521.1| - 0.12 10.8 0.0 0.17 10.4 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DEAD PF00270.29 gi|320100929|ref|YP_004176521.1| - 0.17 11.6 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase Transglut_core PF01841.19 gi|320100930|ref|YP_004176522.1| - 1.4e-11 44.8 0.0 2.4e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily Stevor PF17410.2 gi|320100930|ref|YP_004176522.1| - 0.17 11.4 0.3 0.4 10.2 0.0 1.7 2 0 0 2 2 2 0 Subtelomeric Variable Open Reading frame Met_10 PF02475.16 gi|320100932|ref|YP_004176524.1| - 4.5e-54 183.2 0.0 6.2e-54 182.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|320100932|ref|YP_004176524.1| - 2.7e-07 30.1 0.0 3.6e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|320100932|ref|YP_004176524.1| - 7e-06 25.7 0.0 1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|320100932|ref|YP_004176524.1| - 7.8e-06 25.5 0.0 1.2e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|320100932|ref|YP_004176524.1| - 0.00082 19.2 0.0 0.0012 18.6 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|320100932|ref|YP_004176524.1| - 0.0076 16.2 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|320100932|ref|YP_004176524.1| - 0.008 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|320100932|ref|YP_004176524.1| - 0.011 16.5 0.0 0.022 15.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|320100932|ref|YP_004176524.1| - 0.042 13.5 0.0 0.063 12.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 HhH-GPD PF00730.25 gi|320100933|ref|YP_004176525.1| - 5e-16 59.1 0.0 7.2e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|320100933|ref|YP_004176525.1| - 1.5e-06 28.3 5.8 2.4e-06 27.7 5.8 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|320100933|ref|YP_004176525.1| - 0.00012 21.8 0.0 0.00027 20.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|320100933|ref|YP_004176525.1| - 0.033 14.8 0.0 0.092 13.4 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|320100933|ref|YP_004176525.1| - 0.057 13.8 0.6 0.62 10.5 0.1 2.6 2 1 0 2 2 2 0 Helix-hairpin-helix domain tRNA-synt_2 PF00152.20 gi|320100934|ref|YP_004176526.1| - 3.2e-87 292.5 0.0 3.8e-87 292.3 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|320100934|ref|YP_004176526.1| - 1.6e-11 44.0 0.2 2.6e-11 43.3 0.2 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|320100934|ref|YP_004176526.1| - 0.032 13.7 0.0 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) Acetyltransf_1 PF00583.25 gi|320100935|ref|YP_004176527.1| - 5e-16 59.0 0.2 8.4e-16 58.3 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|320100935|ref|YP_004176527.1| - 2.4e-11 43.9 0.1 3.7e-11 43.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|320100935|ref|YP_004176527.1| - 1e-08 35.2 0.1 1.6e-08 34.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|320100935|ref|YP_004176527.1| - 3.3e-08 33.4 0.0 7.3e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|320100935|ref|YP_004176527.1| - 3.2e-06 27.3 0.1 2.8e-05 24.2 0.5 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|320100935|ref|YP_004176527.1| - 4.9e-05 23.5 0.3 9e-05 22.6 0.3 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|320100935|ref|YP_004176527.1| - 5.4e-05 22.9 0.0 9.7e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|320100935|ref|YP_004176527.1| - 0.0024 18.5 0.0 0.0036 18.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|320100935|ref|YP_004176527.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase DFP PF04127.15 gi|320100936|ref|YP_004176528.1| - 7.4e-56 188.9 0.0 2.1e-54 184.2 0.0 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|320100936|ref|YP_004176528.1| - 2.6e-31 108.5 0.0 4.7e-31 107.7 0.0 1.4 1 0 0 1 1 1 1 Flavoprotein PPS_PS PF02006.16 gi|320100938|ref|YP_004176530.1| - 2.7e-78 261.5 3.1 3.3e-78 261.3 3.1 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Sfi1_C PF10638.9 gi|320100938|ref|YP_004176530.1| - 0.083 13.7 0.1 0.14 13.0 0.1 1.3 1 0 0 1 1 1 0 Spindle body associated protein C-terminus GHMP_kinases_N PF00288.26 gi|320100939|ref|YP_004176531.1| - 0.017 15.3 2.5 0.033 14.4 2.5 1.5 1 0 0 1 1 1 0 GHMP kinases N terminal domain PhosphMutase PF10143.9 gi|320100940|ref|YP_004176532.1| - 1.9e-50 171.0 0.0 2.6e-50 170.6 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|320100940|ref|YP_004176532.1| - 2.5e-29 102.4 0.0 3.1e-29 102.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|320100940|ref|YP_004176532.1| - 0.0071 16.0 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase ABC_tran PF00005.27 gi|320100941|ref|YP_004176533.1| - 4.4e-24 85.5 0.0 6e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100941|ref|YP_004176533.1| - 3.7e-15 56.5 0.1 4.5e-08 33.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100941|ref|YP_004176533.1| - 0.00023 20.7 0.4 0.017 14.6 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|320100941|ref|YP_004176533.1| - 0.0037 17.8 0.1 0.0076 16.8 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|320100941|ref|YP_004176533.1| - 0.0045 16.7 0.0 0.011 15.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|320100941|ref|YP_004176533.1| - 0.0056 16.4 0.1 0.011 15.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|320100941|ref|YP_004176533.1| - 0.013 15.9 0.0 0.017 15.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|320100941|ref|YP_004176533.1| - 0.031 13.9 0.1 0.055 13.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|320100941|ref|YP_004176533.1| - 0.036 13.8 0.0 0.15 11.8 0.0 1.5 1 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|320100941|ref|YP_004176533.1| - 0.036 14.5 0.0 0.068 13.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|320100941|ref|YP_004176533.1| - 0.11 12.8 0.2 0.19 12.0 0.2 1.7 1 1 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.7 gi|320100942|ref|YP_004176534.1| - 1.5e-18 67.1 31.6 1.8e-18 66.8 31.6 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|320100942|ref|YP_004176534.1| - 4.3e-08 32.8 43.7 9.2e-08 31.7 43.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|320100942|ref|YP_004176534.1| - 8.8e-05 22.0 21.2 8.8e-05 22.0 21.2 3.4 2 1 1 3 3 3 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|320100942|ref|YP_004176534.1| - 0.0042 17.1 12.2 0.0042 17.1 12.2 3.4 2 1 2 4 4 4 1 ABC-2 family transporter protein Pantoate_transf PF02548.15 gi|320100943|ref|YP_004176535.1| - 8.6e-108 359.6 0.5 9.7e-108 359.5 0.5 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|320100943|ref|YP_004176535.1| - 9.5e-06 25.2 4.5 0.00018 21.1 1.7 2.8 2 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase Glyco_transf_21 PF13506.6 gi|320100943|ref|YP_004176535.1| - 0.071 12.6 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 21 ApbA_C PF08546.11 gi|320100944|ref|YP_004176536.1| - 3.5e-26 91.8 0.0 5e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|320100944|ref|YP_004176536.1| - 9.7e-21 74.0 0.0 1.6e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|320100944|ref|YP_004176536.1| - 0.002 18.7 0.0 0.0041 17.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.24 gi|320100944|ref|YP_004176536.1| - 0.0022 17.7 4.7 0.003 17.2 3.6 1.7 1 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|320100944|ref|YP_004176536.1| - 0.013 14.7 0.2 0.018 14.3 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.6 gi|320100944|ref|YP_004176536.1| - 0.037 14.3 1.2 0.094 13.0 1.2 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 gi|320100944|ref|YP_004176536.1| - 0.36 10.8 1.1 1.9 8.5 0.4 2.6 3 1 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiP_synth PF10120.9 gi|320100945|ref|YP_004176537.1| - 1.4e-39 135.4 0.0 2e-39 134.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_23 PF13384.6 gi|320100945|ref|YP_004176537.1| - 0.0052 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain FAM35_C PF15793.5 gi|320100945|ref|YP_004176537.1| - 0.01 15.3 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein family FAM35, C-terminal HTH_37 PF13744.6 gi|320100945|ref|YP_004176537.1| - 0.032 14.2 0.1 0.069 13.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FPL PF09758.9 gi|320100945|ref|YP_004176537.1| - 0.047 13.7 0.0 0.098 12.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein DUF3589 PF12141.8 gi|320100946|ref|YP_004176538.1| - 0.057 12.0 0.1 0.064 11.8 0.1 1.2 1 0 0 1 1 1 0 Beta-mannosyltransferases ABC_tran PF00005.27 gi|320100947|ref|YP_004176539.1| - 5.8e-29 101.4 0.0 8.2e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100947|ref|YP_004176539.1| - 7.4e-13 49.0 0.8 1.6e-05 24.9 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|320100947|ref|YP_004176539.1| - 0.0019 18.7 0.1 0.0029 18.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|320100947|ref|YP_004176539.1| - 0.0046 16.7 0.0 0.0081 15.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|320100947|ref|YP_004176539.1| - 0.0089 14.7 0.0 0.3 9.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|320100947|ref|YP_004176539.1| - 0.022 14.5 0.2 0.032 13.9 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|320100947|ref|YP_004176539.1| - 0.025 15.0 0.0 0.032 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|320100947|ref|YP_004176539.1| - 0.032 13.7 0.0 2 7.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|320100947|ref|YP_004176539.1| - 0.048 14.1 0.0 0.082 13.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|320100947|ref|YP_004176539.1| - 0.066 13.5 0.1 0.2 11.9 0.0 1.8 1 1 1 2 2 2 0 AAA domain SRP54 PF00448.22 gi|320100947|ref|YP_004176539.1| - 0.072 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|320100947|ref|YP_004176539.1| - 0.098 11.9 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|320100947|ref|YP_004176539.1| - 0.11 12.2 0.0 0.92 9.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|320100947|ref|YP_004176539.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain MutS_V PF00488.21 gi|320100947|ref|YP_004176539.1| - 0.16 12.0 0.3 18 5.3 0.1 2.1 2 0 0 2 2 2 0 MutS domain V DUF3584 PF12128.8 gi|320100947|ref|YP_004176539.1| - 0.18 9.3 0.0 0.23 8.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) cobW PF02492.19 gi|320100947|ref|YP_004176539.1| - 0.2 11.2 0.2 0.44 10.1 0.2 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC2_membrane_3 PF12698.7 gi|320100948|ref|YP_004176540.1| - 2.2e-22 79.6 14.6 2.6e-22 79.4 14.6 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|320100948|ref|YP_004176540.1| - 1.7e-13 50.5 25.2 4.1e-13 49.3 25.2 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|320100948|ref|YP_004176540.1| - 0.0011 18.9 9.7 0.0011 18.9 9.7 2.4 3 0 0 3 3 3 1 ABC-2 family transporter protein HTH_45 PF14947.6 gi|320100949|ref|YP_004176541.1| - 2.2e-10 40.3 3.4 5.4e-09 35.9 0.2 2.8 2 1 1 3 3 3 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|320100949|ref|YP_004176541.1| - 1.5e-07 30.8 0.1 3.7e-07 29.6 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|320100949|ref|YP_004176541.1| - 2.1e-06 27.7 0.2 5.5e-06 26.4 0.1 1.8 2 0 0 2 2 2 1 DprA winged helix domain HTH_36 PF13730.6 gi|320100949|ref|YP_004176541.1| - 4.6e-06 26.5 0.1 1e-05 25.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|320100949|ref|YP_004176541.1| - 1.5e-05 24.8 0.2 4.1e-05 23.4 0.2 1.8 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|320100949|ref|YP_004176541.1| - 2.1e-05 24.3 0.2 6e-05 22.8 0.2 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.16 gi|320100949|ref|YP_004176541.1| - 0.00013 22.0 0.1 0.00031 20.7 0.1 1.6 1 0 0 1 1 1 1 HemN C-terminal domain HTH_IclR PF09339.10 gi|320100949|ref|YP_004176541.1| - 0.00013 21.7 0.1 0.00031 20.5 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|320100949|ref|YP_004176541.1| - 0.0002 21.1 0.2 0.00064 19.5 0.2 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|320100949|ref|YP_004176541.1| - 0.00021 21.1 0.1 0.00047 20.0 0.1 1.6 1 0 0 1 1 1 1 MarR family DUF505 PF04458.12 gi|320100949|ref|YP_004176541.1| - 0.00045 18.7 1.3 0.0031 16.0 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF505) HTH_Crp_2 PF13545.6 gi|320100949|ref|YP_004176541.1| - 0.00052 19.9 0.1 0.0011 18.9 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|320100949|ref|YP_004176541.1| - 0.0021 18.4 0.4 0.005 17.1 0.2 1.9 2 0 0 2 2 1 1 Transcriptional regulator HTH_12 PF08461.10 gi|320100949|ref|YP_004176541.1| - 0.0021 17.9 0.7 0.0051 16.7 0.5 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_29 PF13551.6 gi|320100949|ref|YP_004176541.1| - 0.0025 17.8 0.0 0.0049 16.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_DeoR PF08220.12 gi|320100949|ref|YP_004176541.1| - 0.0025 17.5 0.1 0.0051 16.5 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|320100949|ref|YP_004176541.1| - 0.0037 17.4 0.2 0.29 11.3 0.1 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|320100949|ref|YP_004176541.1| - 0.0042 17.1 0.5 0.011 15.8 0.2 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.22 gi|320100949|ref|YP_004176541.1| - 0.0046 16.9 0.2 0.0093 15.9 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|320100949|ref|YP_004176541.1| - 0.0047 17.4 0.3 0.0093 16.4 0.3 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain RPA_C PF08784.11 gi|320100949|ref|YP_004176541.1| - 0.0064 17.1 0.0 0.011 16.4 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_28 PF13518.6 gi|320100949|ref|YP_004176541.1| - 0.0084 16.2 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|320100949|ref|YP_004176541.1| - 0.0093 15.7 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain RP-C PF03428.13 gi|320100949|ref|YP_004176541.1| - 0.01 15.5 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_Mga PF08280.11 gi|320100949|ref|YP_004176541.1| - 0.011 15.7 3.0 0.021 14.9 0.2 2.3 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF4423 PF14394.6 gi|320100949|ref|YP_004176541.1| - 0.012 15.3 0.6 0.052 13.3 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) GntR PF00392.21 gi|320100949|ref|YP_004176541.1| - 0.029 14.0 0.1 0.057 13.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.16 gi|320100949|ref|YP_004176541.1| - 0.032 14.6 0.1 0.08 13.3 0.0 1.6 2 0 0 2 2 1 0 Penicillinase repressor HTH_7 PF02796.15 gi|320100949|ref|YP_004176541.1| - 0.038 14.1 0.0 0.083 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HxlR PF01638.17 gi|320100949|ref|YP_004176541.1| - 0.043 13.7 0.3 0.17 11.8 0.3 2.0 1 1 0 1 1 1 0 HxlR-like helix-turn-helix ANAPC2 PF08672.11 gi|320100949|ref|YP_004176541.1| - 0.056 14.0 1.1 2.9 8.5 0.1 3.0 3 0 0 3 3 3 0 Anaphase promoting complex (APC) subunit 2 DUF2250 PF10007.9 gi|320100949|ref|YP_004176541.1| - 0.084 13.0 0.2 0.16 12.1 0.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.12 gi|320100949|ref|YP_004176541.1| - 0.084 12.7 0.1 0.26 11.1 0.0 1.8 2 0 0 2 2 1 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|320100949|ref|YP_004176541.1| - 0.12 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain TnsD PF15978.5 gi|320100949|ref|YP_004176541.1| - 0.13 11.3 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D EcoR124_C PF12008.8 gi|320100949|ref|YP_004176541.1| - 0.14 11.8 0.1 5.4 6.6 0.0 2.0 2 0 0 2 2 2 0 Type I restriction and modification enzyme - subunit R C terminal ArdA PF07275.11 gi|320100950|ref|YP_004176542.1| - 0.061 13.9 0.1 0.29 11.7 0.0 2.1 1 1 1 2 2 2 0 Antirestriction protein (ArdA) Glyco_hydro_57 PF03065.15 gi|320100951|ref|YP_004176543.1| - 6.7e-65 219.4 0.0 1.3e-64 218.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1925 PF09094.11 gi|320100952|ref|YP_004176544.1| - 5e-34 116.5 0.4 9e-34 115.6 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_57 PF03065.15 gi|320100952|ref|YP_004176544.1| - 7.2e-32 110.9 0.0 1.2e-31 110.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1926 PF09095.11 gi|320100952|ref|YP_004176544.1| - 4.2e-26 92.2 0.0 2.9e-12 46.8 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF1926) Glycos_transf_1 PF00534.20 gi|320100953|ref|YP_004176545.1| - 6.1e-24 84.5 0.0 1.1e-23 83.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|320100953|ref|YP_004176545.1| - 6.4e-22 78.4 0.0 9.3e-22 77.9 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.6 gi|320100953|ref|YP_004176545.1| - 8.5e-21 74.8 0.0 1.6e-20 73.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|320100953|ref|YP_004176545.1| - 1.5e-09 38.1 0.1 5.7e-09 36.2 0.0 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|320100953|ref|YP_004176545.1| - 2.6e-09 37.7 0.0 1.1e-08 35.7 0.0 2.0 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|320100953|ref|YP_004176545.1| - 1.9e-07 31.4 0.0 4.1e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.13 gi|320100953|ref|YP_004176545.1| - 0.15 10.6 0.1 0.57 8.7 0.0 1.9 2 0 0 2 2 2 0 Glycogen synthase Glyco_hydro_57 PF03065.15 gi|320100954|ref|YP_004176546.1| - 5.1e-33 114.6 4.3 7.3e-30 104.3 0.0 2.5 3 0 0 3 3 3 2 Glycosyl hydrolase family 57 NifZ PF04319.13 gi|320100954|ref|YP_004176546.1| - 0.054 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 NifZ domain DHHA1 PF02272.19 gi|320100955|ref|YP_004176547.1| - 0.00067 20.1 0.2 0.003 18.0 0.2 2.0 1 1 0 1 1 1 1 DHHA1 domain Thioredoxin_7 PF13899.6 gi|320100956|ref|YP_004176548.1| - 2.6e-05 24.3 0.0 4.1e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Glutaredoxin PF00462.24 gi|320100956|ref|YP_004176548.1| - 0.0042 17.3 0.0 0.0063 16.7 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin DUF929 PF06053.11 gi|320100956|ref|YP_004176548.1| - 0.012 15.0 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF929) Peptidase_M48 PF01435.18 gi|320100958|ref|YP_004176550.1| - 5e-42 143.9 1.4 1.8e-41 142.1 0.0 2.3 2 1 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|320100958|ref|YP_004176550.1| - 1.8e-05 24.1 0.6 4.4e-05 22.8 0.1 1.8 2 0 0 2 2 2 1 BlaR1 peptidase M56 OATP PF03137.20 gi|320100958|ref|YP_004176550.1| - 0.077 11.3 2.1 0.1 10.9 2.1 1.3 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family Yip1 PF04893.17 gi|320100958|ref|YP_004176550.1| - 0.7 9.6 19.3 3.5 7.3 13.1 2.4 2 0 0 2 2 2 0 Yip1 domain DUF3087 PF11286.8 gi|320100958|ref|YP_004176550.1| - 6.3 6.2 6.7 0.41 10.1 0.8 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3087) Lon_C PF05362.13 gi|320100959|ref|YP_004176551.1| - 3.2e-11 43.2 0.0 5.7e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain SecG PF03840.14 gi|320100959|ref|YP_004176551.1| - 0.053 13.6 1.6 0.26 11.4 0.1 2.7 3 0 0 3 3 3 0 Preprotein translocase SecG subunit Metallophos_2 PF12850.7 gi|320100960|ref|YP_004176552.1| - 2.4e-08 34.4 0.0 9.6e-08 32.4 0.1 1.9 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|320100960|ref|YP_004176552.1| - 4.6e-06 27.3 0.1 1.5e-05 25.6 0.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HAD PF12710.7 gi|320100960|ref|YP_004176552.1| - 0.001 19.5 0.1 0.0015 19.0 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Rhabdo_ncap_2 PF03216.13 gi|320100961|ref|YP_004176553.1| - 0.17 11.3 0.0 0.22 11.0 0.0 1.1 1 0 0 1 1 1 0 Rhabdovirus nucleoprotein TPP_enzyme_C PF02775.21 gi|320100963|ref|YP_004176555.1| - 2e-19 69.9 0.0 4.4e-19 68.8 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|320100963|ref|YP_004176555.1| - 5e-16 59.2 0.1 8.2e-16 58.4 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|320100963|ref|YP_004176555.1| - 1.1e-10 40.8 10.9 7.4e-07 28.7 2.3 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|320100963|ref|YP_004176555.1| - 4.9e-09 35.9 12.7 3.3e-05 23.8 1.7 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|320100963|ref|YP_004176555.1| - 2.2e-07 30.9 11.3 8.9e-06 25.7 11.9 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|320100963|ref|YP_004176555.1| - 5.5e-06 26.2 19.1 0.0013 18.7 3.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|320100963|ref|YP_004176555.1| - 7.8e-06 26.0 8.8 1.9e-05 24.7 8.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|320100963|ref|YP_004176555.1| - 1.4e-05 25.5 10.1 0.0004 20.9 11.2 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|320100963|ref|YP_004176555.1| - 1.6e-05 24.9 10.9 0.0022 18.1 12.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Transket_pyr PF02779.24 gi|320100963|ref|YP_004176555.1| - 5.6e-05 22.9 0.1 0.00013 21.7 0.1 1.6 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Fer4_16 PF13484.6 gi|320100963|ref|YP_004176555.1| - 0.00026 21.9 9.4 0.0017 19.2 0.8 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain TPP_enzyme_N PF02776.18 gi|320100963|ref|YP_004176555.1| - 0.02 14.5 2.3 0.023 14.3 0.3 2.1 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_4 PF12800.7 gi|320100963|ref|YP_004176555.1| - 0.037 14.5 2.2 0.037 14.5 2.2 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|320100963|ref|YP_004176555.1| - 0.057 13.9 7.8 0.64 10.5 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|320100963|ref|YP_004176555.1| - 1.5 9.6 7.8 11 6.8 0.9 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|320100963|ref|YP_004176555.1| - 1.9 9.1 11.9 2.1 9.0 2.0 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|320100963|ref|YP_004176555.1| - 3.3 8.6 7.3 4.7 8.1 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|320100963|ref|YP_004176555.1| - 6.5 7.4 12.5 5.5 7.6 1.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I POR PF01558.18 gi|320100964|ref|YP_004176556.1| - 8.3e-31 107.4 0.0 9.8e-31 107.2 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Ribosomal_S16 PF00886.19 gi|320100967|ref|YP_004176559.1| - 0.022 14.8 0.0 0.51 10.4 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein S16 Q_salvage PF10343.9 gi|320100967|ref|YP_004176559.1| - 0.025 14.2 0.0 0.062 12.9 0.0 1.6 2 0 0 2 2 2 0 Potential Queuosine, Q, salvage protein family Lambda_CIII PF02061.16 gi|320100967|ref|YP_004176559.1| - 0.072 13.2 0.1 3.8 7.6 0.1 2.6 2 0 0 2 2 2 0 Lambda Phage CIII HhH-GPD PF00730.25 gi|320100967|ref|YP_004176559.1| - 0.22 12.0 0.0 0.63 10.5 0.0 1.9 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HPS6 PF15702.5 gi|320100968|ref|YP_004176560.1| - 0.073 11.1 0.2 0.084 10.9 0.2 1.0 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 6 protein SMC_Nse1 PF07574.13 gi|320100968|ref|YP_004176560.1| - 0.13 12.2 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex Cons_hypoth95 PF03602.15 gi|320100969|ref|YP_004176561.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|320100969|ref|YP_004176561.1| - 0.039 14.7 0.0 0.13 12.9 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|320100969|ref|YP_004176561.1| - 0.055 12.8 0.0 4 6.7 0.0 2.7 3 0 0 3 3 3 0 ubiE/COQ5 methyltransferase family Methyltransf_30 PF05430.11 gi|320100969|ref|YP_004176561.1| - 0.092 12.6 0.0 0.29 11.0 0.0 1.9 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase N6_N4_Mtase PF01555.18 gi|320100969|ref|YP_004176561.1| - 0.13 12.0 0.0 3.7 7.2 0.0 2.1 2 0 0 2 2 2 0 DNA methylase RHH_3 PF12651.7 gi|320100970|ref|YP_004176562.1| - 0.00013 21.8 0.0 0.00026 20.9 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|320100970|ref|YP_004176562.1| - 0.00098 19.0 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|320100970|ref|YP_004176562.1| - 0.094 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system ABC-3 PF00950.17 gi|320100971|ref|YP_004176563.1| - 2.9e-17 63.0 24.0 4.4e-17 62.4 24.0 1.2 1 0 0 1 1 1 1 ABC 3 transport family ZnuA PF01297.17 gi|320100972|ref|YP_004176564.1| - 6.3e-22 78.2 0.0 7.7e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|320100973|ref|YP_004176565.1| - 3e-21 76.4 0.0 4e-21 76.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320100973|ref|YP_004176565.1| - 8.4e-10 38.9 0.1 0.00052 19.9 0.2 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100973|ref|YP_004176565.1| - 7.7e-05 22.2 0.0 0.29 10.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|320100973|ref|YP_004176565.1| - 0.0094 16.5 0.5 0.015 15.8 0.5 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|320100973|ref|YP_004176565.1| - 0.062 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|320100973|ref|YP_004176565.1| - 0.16 11.2 0.1 0.25 10.6 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin Ald_Xan_dh_C2 PF02738.18 gi|320100975|ref|YP_004176567.1| - 6.5e-177 589.3 0.2 7.7e-177 589.1 0.2 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|320100975|ref|YP_004176567.1| - 5.3e-26 91.1 0.0 1.1e-25 90.2 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 gi|320100976|ref|YP_004176568.1| - 3e-25 88.0 0.0 4.9e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|320100976|ref|YP_004176568.1| - 2e-07 30.9 0.3 2e-07 30.9 0.3 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|320100976|ref|YP_004176568.1| - 5.4e-05 23.2 0.1 8.4e-05 22.5 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|320100976|ref|YP_004176568.1| - 0.019 15.0 0.4 0.078 13.0 0.4 2.1 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PDEase_I_N PF08499.12 gi|320100976|ref|YP_004176568.1| - 0.076 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase N-terminal SAM_2 PF07647.17 gi|320100976|ref|YP_004176568.1| - 0.12 12.5 0.0 0.34 11.1 0.0 1.7 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) FAD_binding_5 PF00941.21 gi|320100977|ref|YP_004176569.1| - 1.4e-26 93.2 0.0 2.5e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|320100977|ref|YP_004176569.1| - 1.1e-13 51.2 0.0 1.9e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain PALP PF00291.25 gi|320100978|ref|YP_004176570.1| - 6.6e-70 235.8 0.1 7.5e-70 235.7 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme MFS_1 PF07690.16 gi|320100979|ref|YP_004176571.1| - 1.1e-13 50.9 32.0 1.3e-12 47.3 23.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Mpv17_PMP22 PF04117.12 gi|320100979|ref|YP_004176571.1| - 0.087 13.1 3.5 4.6 7.5 0.1 3.5 3 0 0 3 3 3 0 Mpv17 / PMP22 family Nre_N PF04894.12 gi|320100980|ref|YP_004176572.1| - 2.1e-105 352.4 0.0 2.6e-105 352.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|320100980|ref|YP_004176572.1| - 1.1e-32 112.3 0.0 1.7e-32 111.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Radical_SAM PF04055.21 gi|320100981|ref|YP_004176573.1| - 3.5e-15 56.8 0.0 6.1e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|320100981|ref|YP_004176573.1| - 0.0017 18.1 2.9 4.4 6.9 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) DUF2192 PF09958.9 gi|320100982|ref|YP_004176574.1| - 2.1e-88 295.7 0.5 2.4e-88 295.5 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) YfdX PF10938.8 gi|320100982|ref|YP_004176574.1| - 0.057 13.3 0.0 6.6 6.7 0.0 2.3 2 0 0 2 2 2 0 YfdX protein HTH_3 PF01381.22 gi|320100985|ref|YP_004176577.1| - 3.6e-05 23.7 0.1 5.2e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_28 PF13518.6 gi|320100985|ref|YP_004176577.1| - 0.00057 20.0 0.0 0.0012 18.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|320100985|ref|YP_004176577.1| - 0.0013 18.2 0.0 0.0023 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_1 PF01527.20 gi|320100985|ref|YP_004176577.1| - 0.0039 17.5 0.0 0.0069 16.7 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_19 PF12844.7 gi|320100985|ref|YP_004176577.1| - 0.009 16.0 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|320100985|ref|YP_004176577.1| - 0.01 15.4 0.1 0.019 14.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|320100985|ref|YP_004176577.1| - 0.013 15.4 0.2 0.026 14.5 0.2 1.5 1 0 0 1 1 1 0 HTH domain MerR PF00376.23 gi|320100985|ref|YP_004176577.1| - 0.028 14.2 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 MerR family regulatory protein HTH_23 PF13384.6 gi|320100985|ref|YP_004176577.1| - 0.035 13.9 1.2 0.051 13.4 0.2 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_26 PF13443.6 gi|320100985|ref|YP_004176577.1| - 0.035 14.5 0.0 0.056 13.9 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Linker_histone PF00538.19 gi|320100985|ref|YP_004176577.1| - 0.047 14.1 0.0 0.11 12.9 0.0 1.6 2 0 0 2 2 2 0 linker histone H1 and H5 family HTH_29 PF13551.6 gi|320100985|ref|YP_004176577.1| - 0.092 12.8 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_10 PF04967.12 gi|320100985|ref|YP_004176577.1| - 0.11 12.3 0.4 0.88 9.4 0.0 2.4 3 0 0 3 3 3 0 HTH DNA binding domain Aminotran_1_2 PF00155.21 gi|320100987|ref|YP_004176579.1| - 2.4e-34 119.1 0.0 2.9e-34 118.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|320100987|ref|YP_004176579.1| - 1.1e-06 27.8 0.0 1.7e-06 27.1 0.0 1.3 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 gi|320100987|ref|YP_004176579.1| - 0.053 12.8 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|320100987|ref|YP_004176579.1| - 0.091 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Radical_SAM PF04055.21 gi|320100988|ref|YP_004176580.1| - 2.1e-09 38.0 0.0 5.2e-09 36.7 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|320100988|ref|YP_004176580.1| - 0.04 13.9 0.1 0.22 11.5 0.0 2.1 2 0 0 2 2 2 0 B12 binding domain HMG-CoA_red PF00368.18 gi|320100989|ref|YP_004176581.1| - 0.16 11.0 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A reductase Clr5 PF14420.6 gi|320100989|ref|YP_004176581.1| - 0.2 11.9 0.0 0.43 10.9 0.0 1.5 1 0 0 1 1 1 0 Clr5 domain OB_aCoA_assoc PF01796.17 gi|320100990|ref|YP_004176582.1| - 3.3e-11 43.0 0.1 4.3e-11 42.7 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|320100990|ref|YP_004176582.1| - 3.9e-09 36.2 1.8 5.2e-09 35.8 1.8 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2767 PF10965.8 gi|320100990|ref|YP_004176582.1| - 0.024 14.6 0.1 0.075 13.0 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2767) Methyltransf_13 PF08421.11 gi|320100990|ref|YP_004176582.1| - 0.043 14.1 0.7 8.9 6.6 0.1 2.5 3 0 0 3 3 3 0 Putative zinc binding domain HypA PF01155.19 gi|320100990|ref|YP_004176582.1| - 0.068 13.2 0.3 0.13 12.3 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ACP_syn_III_C PF08541.10 gi|320100991|ref|YP_004176583.1| - 4.2e-12 46.1 0.0 3e-11 43.3 0.0 2.3 2 1 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|320100991|ref|YP_004176583.1| - 4.2e-06 26.3 0.0 1.1e-05 24.9 0.1 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|320100991|ref|YP_004176583.1| - 0.0014 18.4 0.4 0.0049 16.7 0.2 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.10 gi|320100991|ref|YP_004176583.1| - 0.013 15.1 0.0 0.069 12.8 0.0 1.9 1 1 1 2 2 2 0 Hydroxymethylglutaryl-coenzyme A synthase C terminal ABC_tran PF00005.27 gi|320100992|ref|YP_004176584.1| - 1.9e-29 102.9 0.0 2.7e-29 102.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|320100992|ref|YP_004176584.1| - 5e-18 65.4 0.1 9.2e-18 64.5 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|320100992|ref|YP_004176584.1| - 0.0029 17.5 0.3 0.1 12.4 0.0 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ATPase PF06745.13 gi|320100992|ref|YP_004176584.1| - 0.013 14.9 0.3 1 8.6 0.1 2.2 2 0 0 2 2 2 0 KaiC AAA_22 PF13401.6 gi|320100992|ref|YP_004176584.1| - 0.02 15.2 0.3 0.045 14.0 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|320100992|ref|YP_004176584.1| - 0.15 12.4 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|320100993|ref|YP_004176585.1| - 1e-29 103.8 0.0 1.4e-29 103.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|320100993|ref|YP_004176585.1| - 1.6e-18 67.0 0.0 2.6e-18 66.3 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|320100993|ref|YP_004176585.1| - 6.5e-07 29.5 0.0 9.4e-06 25.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320100993|ref|YP_004176585.1| - 6.1e-05 22.5 0.9 0.00092 18.7 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|320100993|ref|YP_004176585.1| - 0.00021 20.7 0.5 0.0062 16.0 0.3 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_25 PF13481.6 gi|320100993|ref|YP_004176585.1| - 0.0019 17.8 0.0 0.032 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|320100993|ref|YP_004176585.1| - 0.0091 16.3 0.7 0.24 11.7 0.7 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|320100993|ref|YP_004176585.1| - 0.0099 15.6 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|320100993|ref|YP_004176585.1| - 0.019 14.6 0.1 0.026 14.2 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 gi|320100993|ref|YP_004176585.1| - 0.022 15.2 0.1 0.16 12.4 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|320100993|ref|YP_004176585.1| - 0.041 14.3 0.0 0.081 13.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|320100993|ref|YP_004176585.1| - 0.065 13.1 0.1 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase DnaB_C PF03796.15 gi|320100993|ref|YP_004176585.1| - 0.072 12.4 0.1 8 5.7 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|320100993|ref|YP_004176585.1| - 0.11 12.9 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|320100993|ref|YP_004176585.1| - 0.16 11.3 0.0 0.8 9.0 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PRK PF00485.18 gi|320100993|ref|YP_004176585.1| - 0.17 11.6 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|320100993|ref|YP_004176585.1| - 0.21 11.5 0.1 0.35 10.8 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|320100993|ref|YP_004176585.1| - 0.25 11.0 0.6 0.6 9.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain Radical_SAM PF04055.21 gi|320100994|ref|YP_004176586.1| - 1.3e-19 71.2 0.0 2.5e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily BPD_transp_1 PF00528.22 gi|320100995|ref|YP_004176587.1| - 6.6e-25 87.9 15.6 6.6e-25 87.9 15.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Baculo_PEP_C PF04513.12 gi|320100995|ref|YP_004176587.1| - 0.065 13.3 0.1 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus BPD_transp_1 PF00528.22 gi|320100996|ref|YP_004176588.1| - 1.1e-29 103.5 16.4 1.1e-29 103.5 16.4 2.6 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|320100997|ref|YP_004176589.1| - 1.1e-13 50.9 7.0 2.8e-10 39.7 0.1 2.6 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Apolipoprotein PF01442.18 gi|320100997|ref|YP_004176589.1| - 0.012 15.4 1.8 0.024 14.5 1.8 1.4 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain CorA PF01544.18 gi|320100997|ref|YP_004176589.1| - 0.021 14.1 1.1 0.037 13.4 1.1 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein HTH_psq PF05225.16 gi|320100997|ref|YP_004176589.1| - 0.037 13.8 0.1 0.16 11.7 0.1 2.1 1 0 0 1 1 1 0 helix-turn-helix, Psq domain DUF4064 PF13273.6 gi|320100997|ref|YP_004176589.1| - 0.05 13.9 0.8 0.12 12.6 0.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) DUF1664 PF07889.12 gi|320100997|ref|YP_004176589.1| - 0.27 11.3 6.2 0.79 9.8 1.3 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) WXG100 PF06013.12 gi|320100997|ref|YP_004176589.1| - 0.61 10.3 3.9 1.8 8.9 0.2 2.5 1 1 1 2 2 2 0 Proteins of 100 residues with WXG Prominin PF05478.11 gi|320100997|ref|YP_004176589.1| - 0.65 7.9 4.9 0.94 7.3 4.9 1.2 1 0 0 1 1 1 0 Prominin Baculo_PEP_C PF04513.12 gi|320100997|ref|YP_004176589.1| - 0.87 9.6 14.8 2.5 8.2 14.8 1.8 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4618 PF15397.6 gi|320100997|ref|YP_004176589.1| - 1.6 8.1 8.6 0.47 9.8 0.5 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4618) NPV_P10 PF05531.12 gi|320100997|ref|YP_004176589.1| - 1.6 9.2 10.0 0.1 13.0 0.4 3.3 2 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.10 gi|320100997|ref|YP_004176589.1| - 3.9 7.7 5.2 2.6 8.2 2.2 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Adeno_E3 PF06040.11 gi|320100998|ref|YP_004176590.1| - 0.047 13.9 0.2 0.064 13.4 0.2 1.2 1 0 0 1 1 1 0 Adenovirus E3 protein XK-related PF09815.9 gi|320100998|ref|YP_004176590.1| - 0.42 9.6 6.5 0.19 10.7 3.3 1.7 2 0 0 2 2 2 0 XK-related protein PspB PF06667.12 gi|320100999|ref|YP_004176591.1| - 0.084 12.9 0.4 0.14 12.2 0.4 1.4 1 0 0 1 1 1 0 Phage shock protein B NADHdh PF00146.21 gi|320101000|ref|YP_004176592.1| - 1.9e-48 165.3 20.3 2.5e-48 164.9 20.3 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|320101002|ref|YP_004176594.1| - 2e-49 168.4 23.3 2e-49 168.4 23.3 2.1 3 0 0 3 3 3 1 Proton-conducting membrane transporter DUF3493 PF11998.8 gi|320101002|ref|YP_004176594.1| - 0.66 10.2 11.9 5.8 7.2 0.0 5.3 5 0 0 5 5 5 0 Low psii accumulation1 / Rep27 MNHE PF01899.16 gi|320101003|ref|YP_004176595.1| - 4.4e-40 136.8 1.1 5e-40 136.6 1.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DUF2929 PF11151.8 gi|320101003|ref|YP_004176595.1| - 0.19 12.0 2.7 0.47 10.8 2.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2929) Oxidored_q2 PF00420.24 gi|320101004|ref|YP_004176596.1| - 4.4e-22 77.7 0.4 6.4e-22 77.2 0.4 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2070 PF09843.9 gi|320101004|ref|YP_004176596.1| - 0.11 10.8 4.9 0.14 10.4 4.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Curto_V3 PF07436.11 gi|320101004|ref|YP_004176596.1| - 0.23 11.9 1.4 0.44 11.0 1.4 1.5 1 0 0 1 1 1 0 Curtovirus V3 protein MnhB PF04039.13 gi|320101005|ref|YP_004176597.1| - 6.8e-21 74.9 14.3 6.8e-21 74.9 14.3 2.0 2 0 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter FixQ PF05545.11 gi|320101005|ref|YP_004176597.1| - 0.085 12.8 0.6 0.085 12.8 0.6 3.2 3 1 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ Cytochrom_B561 PF03188.16 gi|320101005|ref|YP_004176597.1| - 0.21 11.7 4.9 0.056 13.6 1.0 2.0 2 1 0 2 2 2 0 Eukaryotic cytochrome b561 DUF4040 PF13244.6 gi|320101006|ref|YP_004176598.1| - 7.9e-12 45.2 2.6 7.9e-12 45.2 2.6 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4040) DUF2070 PF09843.9 gi|320101006|ref|YP_004176598.1| - 0.0024 16.2 6.6 0.0024 16.2 6.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Trep_Strep PF09605.10 gi|320101006|ref|YP_004176598.1| - 0.0048 16.9 0.1 0.0048 16.9 0.1 1.7 2 0 0 2 2 2 1 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF5438 PF17506.2 gi|320101006|ref|YP_004176598.1| - 0.016 15.5 0.9 0.024 14.9 0.7 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5438) CreD PF06123.12 gi|320101006|ref|YP_004176598.1| - 0.063 12.1 5.4 0.065 12.0 5.4 1.0 1 0 0 1 1 1 0 Inner membrane protein CreD PhaG_MnhG_YufB PF03334.14 gi|320101007|ref|YP_004176599.1| - 2.5e-16 59.7 10.6 3.6e-16 59.2 10.6 1.3 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF1656 PF07869.12 gi|320101007|ref|YP_004176599.1| - 0.78 9.8 8.8 3 7.9 1.3 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1656) MrpF_PhaF PF04066.13 gi|320101008|ref|YP_004176600.1| - 5.7e-12 45.8 7.9 5.7e-12 45.8 7.9 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) RDD PF06271.12 gi|320101008|ref|YP_004176600.1| - 0.017 15.3 4.8 0.018 15.2 4.8 1.0 1 0 0 1 1 1 0 RDD family Pox_P21 PF05313.12 gi|320101008|ref|YP_004176600.1| - 2.3 7.7 8.7 2.5 7.6 8.7 1.0 1 0 0 1 1 1 0 Poxvirus P21 membrane protein MgtE PF01769.16 gi|320101008|ref|YP_004176600.1| - 2.4 8.6 10.2 2.9 8.3 10.2 1.1 1 0 0 1 1 1 0 Divalent cation transporter Pex24p PF06398.11 gi|320101008|ref|YP_004176600.1| - 8.8 5.2 5.8 0.64 8.9 1.2 1.4 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin Fer4 PF00037.27 gi|320101009|ref|YP_004176601.1| - 6.1e-15 54.3 10.9 1.2e-07 31.2 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|320101009|ref|YP_004176601.1| - 1.6e-11 44.6 4.8 2.2e-11 44.1 4.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|320101009|ref|YP_004176601.1| - 1.8e-10 40.8 4.2 1.8e-05 24.8 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|320101009|ref|YP_004176601.1| - 4e-10 39.6 17.9 3.7e-07 30.2 10.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|320101009|ref|YP_004176601.1| - 7.7e-10 38.4 11.7 5.3e-05 23.1 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|320101009|ref|YP_004176601.1| - 1.1e-09 38.4 26.7 1.9e-06 27.9 9.1 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|320101009|ref|YP_004176601.1| - 9.6e-08 32.9 6.1 0.0014 19.5 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|320101009|ref|YP_004176601.1| - 1.2e-07 31.4 10.2 0.0019 18.2 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|320101009|ref|YP_004176601.1| - 9.4e-07 29.2 2.8 0.01 16.3 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|320101009|ref|YP_004176601.1| - 1.4e-06 28.7 3.9 0.0052 17.3 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|320101009|ref|YP_004176601.1| - 0.0021 18.9 14.7 0.066 14.2 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|320101009|ref|YP_004176601.1| - 0.0022 18.2 2.4 0.16 12.1 0.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|320101009|ref|YP_004176601.1| - 0.0022 18.8 4.3 0.81 10.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|320101009|ref|YP_004176601.1| - 0.0079 16.6 11.8 0.29 11.7 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|320101009|ref|YP_004176601.1| - 0.022 15.5 6.7 2.2 9.1 0.0 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|320101009|ref|YP_004176601.1| - 0.22 12.1 8.4 3.8 8.1 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|320101009|ref|YP_004176601.1| - 0.26 11.4 0.2 0.26 11.4 0.2 2.0 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Complex1_49kDa PF00346.19 gi|320101010|ref|YP_004176602.1| - 6.4e-63 212.4 0.5 1.9e-60 204.3 0.5 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|320101010|ref|YP_004176602.1| - 6.1e-12 45.2 3.9 1.1e-09 37.8 0.4 3.4 4 0 0 4 4 4 2 Nickel-dependent hydrogenase DUF2369 PF10179.9 gi|320101010|ref|YP_004176602.1| - 0.14 12.5 0.3 28 5.2 0.0 3.1 3 0 0 3 3 3 0 Uncharacterised conserved protein (DUF2369) Complex1_30kDa PF00329.19 gi|320101011|ref|YP_004176603.1| - 1.3e-20 74.2 0.0 1.5e-20 74.0 0.0 1.0 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|320101012|ref|YP_004176604.1| - 5.6e-29 100.6 0.4 6.9e-29 100.3 0.4 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Sua5_yciO_yrdC PF01300.18 gi|320101013|ref|YP_004176605.1| - 3.8e-44 150.3 0.0 5.8e-44 149.7 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|320101013|ref|YP_004176605.1| - 4e-31 106.5 10.3 3.2e-15 55.6 1.3 2.4 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|320101013|ref|YP_004176605.1| - 1.1e-23 83.9 0.0 2.6e-23 82.6 0.0 1.6 2 0 0 2 2 2 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|320101013|ref|YP_004176605.1| - 2.2e-19 69.6 0.1 5.4e-19 68.4 0.0 1.7 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|320101013|ref|YP_004176605.1| - 0.0008 19.2 0.0 0.32 10.7 0.0 2.5 3 0 0 3 3 3 2 Glycoprotease family zf-MYST PF17772.1 gi|320101013|ref|YP_004176605.1| - 1.1 8.9 4.9 0.13 11.8 0.4 1.8 2 0 0 2 2 2 0 MYST family zinc finger domain HupF_HypC PF01455.18 gi|320101014|ref|YP_004176606.1| - 6.1e-22 77.5 0.4 6.9e-22 77.4 0.4 1.0 1 0 0 1 1 1 1 HupF/HypC family UPF0113_N PF17833.1 gi|320101014|ref|YP_004176606.1| - 0.11 13.0 0.0 0.12 12.9 0.0 1.1 1 0 0 1 1 1 0 UPF0113 Pre-PUA domain AIRS_C PF02769.22 gi|320101015|ref|YP_004176607.1| - 5.2e-23 81.9 0.2 8.3e-23 81.2 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|320101015|ref|YP_004176607.1| - 2.4e-14 53.8 0.9 7.4e-14 52.2 0.9 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF4346 PF14251.6 gi|320101016|ref|YP_004176608.1| - 8.1e-12 45.2 0.1 5.6e-05 23.2 0.1 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF4346) CdhD PF03599.16 gi|320101016|ref|YP_004176608.1| - 0.0002 20.2 0.0 0.00034 19.4 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Pterin_bind PF00809.22 gi|320101016|ref|YP_004176608.1| - 0.011 15.5 0.1 0.065 12.9 0.1 2.1 2 1 0 2 2 2 0 Pterin binding enzyme RETICULATA-like PF11891.8 gi|320101016|ref|YP_004176608.1| - 0.076 12.8 0.0 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 Protein RETICULATA-related Flavoprotein PF02441.19 gi|320101017|ref|YP_004176609.1| - 1.1e-18 67.5 0.1 1.8e-18 66.8 0.1 1.3 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.27 gi|320101017|ref|YP_004176609.1| - 2.2e-10 39.9 11.6 1.1e-06 28.2 2.2 3.1 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|320101017|ref|YP_004176609.1| - 2.9e-07 30.2 12.1 0.00081 19.4 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|320101017|ref|YP_004176609.1| - 1e-06 29.2 9.7 1.9e-06 28.4 9.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|320101017|ref|YP_004176609.1| - 4.9e-06 27.4 5.1 0.0036 18.2 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|320101017|ref|YP_004176609.1| - 6.1e-06 26.3 22.7 0.00065 19.8 12.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|320101017|ref|YP_004176609.1| - 2.1e-05 24.6 6.0 3.1e-05 24.0 6.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|320101017|ref|YP_004176609.1| - 0.00025 21.2 9.9 0.00038 20.5 9.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|320101017|ref|YP_004176609.1| - 0.029 14.4 14.1 0.088 13.0 3.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|320101017|ref|YP_004176609.1| - 0.056 14.2 11.7 1.2 9.9 1.5 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|320101017|ref|YP_004176609.1| - 0.54 10.8 12.4 78 3.9 12.6 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|320101017|ref|YP_004176609.1| - 0.6 10.6 12.5 0.18 12.3 2.7 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|320101017|ref|YP_004176609.1| - 3.5 8.8 12.6 3.5 8.8 3.5 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain DHNA PF04038.12 gi|320101018|ref|YP_004176610.1| - 2.4e-34 118.1 0.0 2.7e-34 117.9 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase RNA_pol_A_bac PF01000.26 gi|320101018|ref|YP_004176610.1| - 0.16 12.4 0.0 0.19 12.1 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain MAF_flag10 PF01973.18 gi|320101019|ref|YP_004176611.1| - 2.1e-25 89.4 0.0 2.8e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|320101019|ref|YP_004176611.1| - 0.012 15.6 0.0 0.038 14.0 0.0 1.7 2 0 0 2 2 2 0 Thiamin pyrophosphokinase, catalytic domain GCHY-1 PF02649.14 gi|320101020|ref|YP_004176612.1| - 1.3e-29 103.6 0.0 1.6e-29 103.2 0.0 1.1 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF5055 PF16478.5 gi|320101021|ref|YP_004176613.1| - 0.17 12.1 0.0 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5055) Desulfoferrodox PF01880.18 gi|320101022|ref|YP_004176614.1| - 7e-30 103.5 0.0 8.4e-30 103.2 0.0 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|320101022|ref|YP_004176614.1| - 5.1e-10 39.6 0.0 6.5e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY RS4NT PF08071.12 gi|320101022|ref|YP_004176614.1| - 0.16 12.1 0.3 0.36 11.0 0.3 1.6 1 0 0 1 1 1 0 RS4NT (NUC023) domain HTH_AsnC-type PF13404.6 gi|320101024|ref|YP_004176616.1| - 5.1e-13 48.6 0.1 1.4e-12 47.3 0.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|320101024|ref|YP_004176616.1| - 2.2e-10 40.3 0.0 4e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|320101024|ref|YP_004176616.1| - 9.1e-10 37.9 1.7 1e-09 37.8 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|320101024|ref|YP_004176616.1| - 0.00074 19.4 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|320101024|ref|YP_004176616.1| - 0.0029 18.1 0.1 0.0065 16.9 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|320101024|ref|YP_004176616.1| - 0.0083 16.0 0.1 0.03 14.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HxlR PF01638.17 gi|320101024|ref|YP_004176616.1| - 0.0097 15.7 0.1 0.018 14.9 0.1 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix NapD PF03927.13 gi|320101024|ref|YP_004176616.1| - 0.012 15.7 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 NapD protein MarR PF01047.22 gi|320101024|ref|YP_004176616.1| - 0.025 14.5 0.0 0.11 12.5 0.1 2.0 3 0 0 3 3 3 0 MarR family TrmB PF01978.19 gi|320101024|ref|YP_004176616.1| - 0.051 13.5 0.8 0.21 11.5 0.1 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_50 PF18024.1 gi|320101024|ref|YP_004176616.1| - 0.052 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|320101024|ref|YP_004176616.1| - 0.06 13.5 0.6 0.1 12.8 0.1 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_47 PF16221.5 gi|320101024|ref|YP_004176616.1| - 0.11 12.1 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 winged helix-turn-helix Mem_trans PF03547.18 gi|320101025|ref|YP_004176617.1| - 7.7e-09 34.4 15.7 3.5e-05 22.4 1.8 2.1 1 1 1 2 2 2 2 Membrane transport protein TraP PF07296.11 gi|320101025|ref|YP_004176617.1| - 0.1 11.8 0.4 0.25 10.5 0.4 1.6 1 0 0 1 1 1 0 TraP protein BPD_transp_1 PF00528.22 gi|320101026|ref|YP_004176618.1| - 5.5e-21 75.1 20.9 5.5e-21 75.1 20.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|320101026|ref|YP_004176618.1| - 1.3e-06 28.2 0.2 1.3e-06 28.2 0.2 2.6 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|320101027|ref|YP_004176619.1| - 4.2e-40 137.5 8.4 4.2e-40 137.5 8.4 2.0 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|320101028|ref|YP_004176620.1| - 4.4e-71 239.8 0.3 6.4e-71 239.3 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ACT_7 PF13840.6 gi|320101029|ref|YP_004176621.1| - 3.2e-10 39.6 2.6 5e-08 32.6 0.4 2.4 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|320101029|ref|YP_004176621.1| - 0.00062 19.5 5.2 0.0016 18.2 0.2 3.0 3 1 0 3 3 3 1 ACT domain GATase_4 PF13230.6 gi|320101030|ref|YP_004176622.1| - 1.2e-33 116.2 0.0 1.3e-33 116.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|320101030|ref|YP_004176622.1| - 1.1e-11 45.0 0.0 2e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|320101030|ref|YP_004176622.1| - 0.0068 16.3 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Nckap1 PF09735.9 gi|320101030|ref|YP_004176622.1| - 0.15 10.0 0.0 0.19 9.6 0.0 1.0 1 0 0 1 1 1 0 Membrane-associated apoptosis protein tRNA-synt_2 PF00152.20 gi|320101031|ref|YP_004176623.1| - 7.5e-41 140.2 0.0 9.5e-41 139.9 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) HD PF01966.22 gi|320101032|ref|YP_004176624.1| - 0.055 13.7 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 HD domain PA14 PF07691.12 gi|320101033|ref|YP_004176625.1| - 1.6e-17 63.7 0.0 2.1e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 PA14 domain GLEYA PF10528.9 gi|320101033|ref|YP_004176625.1| - 0.13 12.8 0.1 1.2 9.7 0.1 2.2 1 1 0 1 1 1 0 GLEYA domain TrmB PF01978.19 gi|320101034|ref|YP_004176626.1| - 0.0037 17.1 0.1 0.0094 15.8 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|320101034|ref|YP_004176626.1| - 0.0048 16.5 0.1 0.013 15.1 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family SKA2 PF16740.5 gi|320101034|ref|YP_004176626.1| - 0.053 13.3 0.4 0.21 11.4 0.0 2.0 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 2 PadR PF03551.14 gi|320101034|ref|YP_004176626.1| - 0.085 12.8 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family NPV_P10 PF05531.12 gi|320101034|ref|YP_004176626.1| - 0.19 12.2 1.8 2.2 8.8 0.5 2.7 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein AI-2E_transport PF01594.16 gi|320101034|ref|YP_004176626.1| - 0.21 10.7 0.3 9.5 5.3 0.0 2.1 1 1 1 2 2 2 0 AI-2E family transporter DUF1664 PF07889.12 gi|320101034|ref|YP_004176626.1| - 0.9 9.6 4.3 12 5.9 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) AAA PF00004.29 gi|320101035|ref|YP_004176627.1| - 7e-33 113.9 0.0 1.1e-32 113.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.18 gi|320101035|ref|YP_004176627.1| - 6.1e-15 55.0 1.5 1.4e-14 53.9 1.5 1.6 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_lid_3 PF17862.1 gi|320101035|ref|YP_004176627.1| - 1.9e-08 34.0 0.0 3.7e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 AAA+ lid domain Vps4_C PF09336.10 gi|320101035|ref|YP_004176627.1| - 6.6e-06 26.0 0.0 1.9e-05 24.6 0.0 1.9 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain AAA_2 PF07724.14 gi|320101035|ref|YP_004176627.1| - 7.5e-06 26.2 0.0 1.5e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|320101035|ref|YP_004176627.1| - 4e-05 23.4 0.0 0.00013 21.8 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|320101035|ref|YP_004176627.1| - 0.00014 22.3 0.1 0.18 12.2 0.0 2.5 1 1 1 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|320101035|ref|YP_004176627.1| - 0.00015 22.1 0.0 0.0099 16.2 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|320101035|ref|YP_004176627.1| - 0.00022 21.8 0.0 0.0016 18.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|320101035|ref|YP_004176627.1| - 0.0003 20.6 0.0 0.00053 19.8 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase TIP49 PF06068.13 gi|320101035|ref|YP_004176627.1| - 0.00035 19.9 0.2 0.012 14.9 0.0 2.4 2 1 1 3 3 3 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|320101035|ref|YP_004176627.1| - 0.00039 20.2 0.0 0.00067 19.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein TPR_1 PF00515.28 gi|320101035|ref|YP_004176627.1| - 0.00042 20.0 1.4 0.0016 18.2 1.4 2.1 1 0 0 1 1 1 1 Tetratricopeptide repeat AAA_5 PF07728.14 gi|320101035|ref|YP_004176627.1| - 0.00063 19.8 0.0 0.0031 17.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|320101035|ref|YP_004176627.1| - 0.0011 19.0 0.4 1.1 9.1 0.1 2.7 1 1 1 2 2 2 2 ATPase domain predominantly from Archaea TPR_2 PF07719.17 gi|320101035|ref|YP_004176627.1| - 0.0017 18.3 2.6 0.0034 17.4 0.7 2.6 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|320101035|ref|YP_004176627.1| - 0.0036 17.4 2.9 0.0089 16.2 1.1 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat RNA_helicase PF00910.22 gi|320101035|ref|YP_004176627.1| - 0.0096 16.3 0.0 0.034 14.6 0.0 2.0 2 0 0 2 2 1 1 RNA helicase AAA_14 PF13173.6 gi|320101035|ref|YP_004176627.1| - 0.011 15.8 0.0 0.027 14.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|320101035|ref|YP_004176627.1| - 0.015 14.9 0.1 0.14 11.8 0.0 2.2 1 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|320101035|ref|YP_004176627.1| - 0.016 14.9 0.0 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|320101035|ref|YP_004176627.1| - 0.018 14.9 0.0 0.053 13.4 0.0 1.8 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|320101035|ref|YP_004176627.1| - 0.026 14.8 0.0 0.05 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|320101035|ref|YP_004176627.1| - 0.028 13.9 0.0 0.098 12.2 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|320101035|ref|YP_004176627.1| - 0.037 14.2 0.0 0.072 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|320101035|ref|YP_004176627.1| - 0.056 13.1 0.0 0.093 12.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF5113 PF17140.4 gi|320101035|ref|YP_004176627.1| - 0.075 12.8 0.4 0.16 11.8 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5113) DUF815 PF05673.13 gi|320101035|ref|YP_004176627.1| - 0.075 12.2 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|320101035|ref|YP_004176627.1| - 0.088 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TPR_6 PF13174.6 gi|320101035|ref|YP_004176627.1| - 0.12 13.1 4.9 4.5 8.1 0.6 4.1 3 1 0 3 3 3 0 Tetratricopeptide repeat Zeta_toxin PF06414.12 gi|320101035|ref|YP_004176627.1| - 0.12 11.6 0.0 0.64 9.3 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin TPR_11 PF13414.6 gi|320101035|ref|YP_004176627.1| - 0.13 12.0 1.3 0.32 10.7 1.3 1.7 1 0 0 1 1 1 0 TPR repeat TPR_14 PF13428.6 gi|320101035|ref|YP_004176627.1| - 0.15 13.0 0.0 1.4 9.9 0.1 2.6 1 1 0 1 1 1 0 Tetratricopeptide repeat NACHT PF05729.12 gi|320101035|ref|YP_004176627.1| - 0.18 11.7 0.0 3.1 7.7 0.0 2.2 1 1 1 2 2 2 0 NACHT domain TPR_16 PF13432.6 gi|320101035|ref|YP_004176627.1| - 0.19 12.4 0.4 0.89 10.3 0.3 2.2 1 1 1 2 2 2 0 Tetratricopeptide repeat Hydin_ADK PF17213.3 gi|320101035|ref|YP_004176627.1| - 0.21 11.9 0.0 0.38 11.0 0.0 1.4 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain Cren7 PF11520.8 gi|320101036|ref|YP_004176628.1| - 1.4e-33 114.6 2.6 1.5e-33 114.5 2.6 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DUF4585 PF15232.6 gi|320101036|ref|YP_004176628.1| - 0.036 14.1 0.1 0.065 13.3 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4585) DHO_dh PF01180.21 gi|320101037|ref|YP_004176629.1| - 6.3e-33 114.2 0.0 4e-28 98.5 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Fer4 PF00037.27 gi|320101037|ref|YP_004176629.1| - 3.4e-12 45.6 18.1 2e-07 30.5 1.0 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|320101037|ref|YP_004176629.1| - 7.9e-12 45.1 8.0 2.2e-11 43.7 7.9 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|320101037|ref|YP_004176629.1| - 2.4e-11 44.0 10.2 5.2e-11 43.0 10.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|320101037|ref|YP_004176629.1| - 1.7e-09 37.7 8.9 3e-09 36.9 8.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|320101037|ref|YP_004176629.1| - 2.4e-09 36.7 12.2 0.00022 21.1 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|320101037|ref|YP_004176629.1| - 1.9e-08 34.0 17.1 0.00012 22.0 1.3 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|320101037|ref|YP_004176629.1| - 7.5e-07 29.2 11.6 2.4e-06 27.6 10.7 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|320101037|ref|YP_004176629.1| - 5.2e-06 27.3 7.6 0.0035 18.3 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain NMO PF03060.15 gi|320101037|ref|YP_004176629.1| - 1.5e-05 24.6 0.4 2.3e-05 24.0 0.4 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_22 PF17179.4 gi|320101037|ref|YP_004176629.1| - 0.00026 21.8 6.4 0.17 12.7 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|320101037|ref|YP_004176629.1| - 0.00028 21.3 12.1 0.0015 19.0 11.5 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain His_biosynth PF00977.21 gi|320101037|ref|YP_004176629.1| - 0.0014 18.1 0.0 0.011 15.2 0.0 2.3 3 0 0 3 3 3 1 Histidine biosynthesis protein Fer4_13 PF13370.6 gi|320101037|ref|YP_004176629.1| - 0.0033 17.9 9.0 0.36 11.4 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I FMN_dh PF01070.18 gi|320101037|ref|YP_004176629.1| - 0.0092 15.0 4.3 0.038 13.0 3.4 2.4 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Fer4_4 PF12800.7 gi|320101037|ref|YP_004176629.1| - 0.012 16.1 18.8 0.067 13.7 2.9 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|320101037|ref|YP_004176629.1| - 0.015 15.8 12.6 2.3 8.8 12.7 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|320101037|ref|YP_004176629.1| - 0.022 15.5 13.2 0.71 10.6 1.7 3.0 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|320101037|ref|YP_004176629.1| - 0.04 14.9 20.9 0.055 14.4 4.6 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain IMPDH PF00478.25 gi|320101037|ref|YP_004176629.1| - 0.047 12.7 0.1 0.13 11.2 0.0 1.7 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|320101037|ref|YP_004176629.1| - 0.17 11.0 0.1 0.27 10.3 0.1 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase PGK PF00162.19 gi|320101038|ref|YP_004176630.1| - 4e-94 315.6 0.0 4.6e-94 315.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|320101039|ref|YP_004176631.1| - 1.8e-12 47.1 0.0 2.6e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|320101039|ref|YP_004176631.1| - 6.3e-06 26.5 0.0 1.6e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|320101039|ref|YP_004176631.1| - 0.0002 21.5 0.0 0.0004 20.5 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Usp PF00582.26 gi|320101040|ref|YP_004176632.1| - 7e-19 68.7 0.1 4.4e-17 62.9 0.1 2.0 1 1 0 1 1 1 1 Universal stress protein family Phosphorylase PF00343.20 gi|320101041|ref|YP_004176633.1| - 1.6e-10 39.9 0.0 2.5e-09 36.0 0.0 2.2 2 0 0 2 2 2 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|320101041|ref|YP_004176633.1| - 7e-10 38.7 0.0 1.3e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|320101041|ref|YP_004176633.1| - 6.6e-05 23.3 0.0 0.00012 22.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Peptidase_M28 PF04389.17 gi|320101042|ref|YP_004176634.1| - 2.3e-06 27.5 0.2 0.00025 20.8 0.0 2.4 2 0 0 2 2 2 2 Peptidase family M28 DUF4910 PF16254.5 gi|320101042|ref|YP_004176634.1| - 0.01 14.7 0.1 0.24 10.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4910) tRNA_synthFbeta PF17759.1 gi|320101043|ref|YP_004176635.1| - 8.6e-40 136.5 0.0 1.4e-39 135.8 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|320101043|ref|YP_004176635.1| - 1e-18 67.4 0.1 1.4e-13 50.9 0.1 3.6 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|320101043|ref|YP_004176635.1| - 5.8e-13 48.9 0.0 9.9e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|320101043|ref|YP_004176635.1| - 7.8e-05 22.8 0.0 0.015 15.5 0.0 3.3 2 1 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|320101043|ref|YP_004176635.1| - 0.00038 20.0 0.0 0.0014 18.2 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) Na_H_Exchanger PF00999.21 gi|320101044|ref|YP_004176636.1| - 3.2e-30 105.2 46.3 4.2e-30 104.8 46.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MSA-2c PF12238.8 gi|320101045|ref|YP_004176637.1| - 0.78 9.7 4.7 1.3 8.9 4.7 1.4 1 0 0 1 1 1 0 Merozoite surface antigen 2c CAP_N PF01213.19 gi|320101045|ref|YP_004176637.1| - 3.6 7.0 15.5 5.7 6.3 15.5 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal HTH_3 PF01381.22 gi|320101046|ref|YP_004176638.1| - 0.0027 17.7 0.0 0.0053 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|320101046|ref|YP_004176638.1| - 0.007 16.0 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.7 gi|320101046|ref|YP_004176638.1| - 0.027 14.5 0.0 0.67 10.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|320101046|ref|YP_004176638.1| - 0.071 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|320101046|ref|YP_004176638.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT PNP_UDP_1 PF01048.20 gi|320101048|ref|YP_004176640.1| - 8.1e-42 143.1 0.5 1e-41 142.8 0.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily tRNA-synt_1e PF01406.19 gi|320101049|ref|YP_004176641.1| - 9.4e-122 406.1 0.0 1.2e-121 405.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|320101049|ref|YP_004176641.1| - 2.2e-11 43.1 1.9 1.5e-08 33.9 0.9 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|320101049|ref|YP_004176641.1| - 4.3e-09 36.7 0.8 1.1e-08 35.4 0.1 2.0 2 0 0 2 2 2 1 DALR domain tRNA-synt_1 PF00133.22 gi|320101049|ref|YP_004176641.1| - 8.9e-06 24.2 0.3 0.00034 19.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|320101049|ref|YP_004176641.1| - 0.00077 18.5 0.3 0.0028 16.6 0.0 2.0 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), catalytic domain UPF0102 PF02021.17 gi|320101050|ref|YP_004176642.1| - 0.00013 22.1 0.7 0.00034 20.8 0.7 1.7 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 MarR_2 PF12802.7 gi|320101050|ref|YP_004176642.1| - 0.0016 18.3 0.5 0.023 14.6 0.0 2.8 4 1 0 4 4 4 1 MarR family MlaD PF02470.20 gi|320101050|ref|YP_004176642.1| - 0.014 15.7 2.7 0.018 15.3 2.7 1.5 1 1 0 1 1 1 0 MlaD protein DUF3394 PF11874.8 gi|320101050|ref|YP_004176642.1| - 0.065 12.9 0.3 0.3 10.7 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3394) NERD PF08378.11 gi|320101050|ref|YP_004176642.1| - 0.13 12.7 0.0 0.27 11.7 0.0 1.6 1 0 0 1 1 1 0 Nuclease-related domain HTH_20 PF12840.7 gi|320101050|ref|YP_004176642.1| - 0.27 11.3 1.3 0.8 9.8 0.0 2.6 4 1 0 4 4 4 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|320101051|ref|YP_004176643.1| - 5.1e-08 33.5 0.1 5.6e-07 30.1 0.0 2.6 2 2 1 3 3 3 1 Radical SAM superfamily FAD_binding_4 PF01565.23 gi|320101051|ref|YP_004176643.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain RelB_N PF18506.1 gi|320101052|ref|YP_004176644.1| - 0.011 15.5 0.0 0.29 11.0 0.0 2.4 2 1 0 2 2 2 0 RelB Antitoxin alpha helical domain HAD PF12710.7 gi|320101053|ref|YP_004176645.1| - 5.1e-16 59.6 0.0 6.7e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|320101053|ref|YP_004176645.1| - 1.3e-13 51.7 0.0 5.3e-12 46.5 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|320101053|ref|YP_004176645.1| - 1e-08 35.5 0.0 9e-08 32.4 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|320101053|ref|YP_004176645.1| - 1e-05 25.4 0.0 7.9e-05 22.5 0.0 2.1 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|320101053|ref|YP_004176645.1| - 0.0036 16.7 0.0 0.01 15.3 0.0 1.6 2 0 0 2 2 2 1 Putative Phosphatase Hydrolase_6 PF13344.6 gi|320101053|ref|YP_004176645.1| - 0.12 12.5 0.4 0.82 9.8 0.4 2.3 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Zn-ribbon_8 PF09723.10 gi|320101054|ref|YP_004176646.1| - 0.00092 19.3 0.9 0.0017 18.4 0.9 1.4 1 0 0 1 1 1 1 Zinc ribbon domain FYDLN_acid PF09538.10 gi|320101054|ref|YP_004176646.1| - 0.015 16.0 1.0 0.022 15.5 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) HypA PF01155.19 gi|320101054|ref|YP_004176646.1| - 0.02 14.9 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2HC5 PF06221.13 gi|320101054|ref|YP_004176646.1| - 0.095 12.7 0.1 0.15 12.1 0.1 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type TFIIE_beta PF02186.15 gi|320101054|ref|YP_004176646.1| - 0.1 12.9 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 TFIIE beta subunit core domain OrfB_Zn_ribbon PF07282.11 gi|320101054|ref|YP_004176646.1| - 0.15 12.0 0.5 0.22 11.5 0.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain UPF0547 PF10571.9 gi|320101054|ref|YP_004176646.1| - 0.17 12.0 6.2 0.23 11.6 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|320101054|ref|YP_004176646.1| - 0.49 10.2 4.5 3.2 7.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_4 PF13717.6 gi|320101054|ref|YP_004176646.1| - 0.54 10.2 5.9 3.4 7.7 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HalOD2 PF18547.1 gi|320101054|ref|YP_004176646.1| - 1.5 8.7 3.7 6.7 6.7 1.2 2.1 2 0 0 2 2 2 0 Halobacterial output domain 2 PhnA_Zn_Ribbon PF08274.12 gi|320101054|ref|YP_004176646.1| - 5.9 6.9 5.8 1.7 8.7 0.7 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF167 PF02594.16 gi|320101055|ref|YP_004176647.1| - 3.8e-18 65.4 0.0 6.4e-18 64.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 TRM PF02005.16 gi|320101056|ref|YP_004176648.1| - 6.2e-78 262.6 0.0 7.5e-78 262.3 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|320101056|ref|YP_004176648.1| - 1.2e-06 28.3 0.0 1.9e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|320101056|ref|YP_004176648.1| - 1.6e-05 24.8 0.0 2.3e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|320101056|ref|YP_004176648.1| - 0.044 13.3 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|320101056|ref|YP_004176648.1| - 0.044 13.2 0.0 0.072 12.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|320101056|ref|YP_004176648.1| - 0.066 12.9 0.0 0.25 11.1 0.0 1.8 2 0 0 2 2 2 0 Lysine methyltransferase NTPase_1 PF03266.15 gi|320101057|ref|YP_004176649.1| - 1e-48 165.5 0.1 1.2e-48 165.2 0.1 1.0 1 0 0 1 1 1 1 NTPase MeaB PF03308.16 gi|320101057|ref|YP_004176649.1| - 8.1e-06 25.0 0.2 1.5e-05 24.1 0.2 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF2478 PF10649.9 gi|320101057|ref|YP_004176649.1| - 1.3e-05 24.9 0.0 1.8e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_18 PF13238.6 gi|320101057|ref|YP_004176649.1| - 0.00014 22.4 0.0 0.00039 21.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|320101057|ref|YP_004176649.1| - 0.00028 20.8 0.0 0.00039 20.3 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|320101057|ref|YP_004176649.1| - 0.00042 20.6 0.0 0.0015 18.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|320101057|ref|YP_004176649.1| - 0.00044 20.3 0.0 0.00076 19.6 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|320101057|ref|YP_004176649.1| - 0.00071 19.8 0.0 0.002 18.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|320101057|ref|YP_004176649.1| - 0.0029 17.4 0.0 0.0067 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|320101057|ref|YP_004176649.1| - 0.0034 17.1 0.0 0.023 14.4 0.0 2.0 1 1 1 2 2 2 1 AAA domain NACHT PF05729.12 gi|320101057|ref|YP_004176649.1| - 0.0048 16.8 0.0 0.0098 15.8 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 gi|320101057|ref|YP_004176649.1| - 0.0062 16.9 0.3 0.011 16.1 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|320101057|ref|YP_004176649.1| - 0.0066 15.9 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA PF00004.29 gi|320101057|ref|YP_004176649.1| - 0.011 16.2 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|320101057|ref|YP_004176649.1| - 0.013 16.0 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_28 PF13521.6 gi|320101057|ref|YP_004176649.1| - 0.024 14.9 0.0 0.054 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|320101057|ref|YP_004176649.1| - 0.028 14.4 0.1 1.5 8.8 0.0 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|320101057|ref|YP_004176649.1| - 0.036 13.7 0.0 0.07 12.7 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.6 gi|320101057|ref|YP_004176649.1| - 0.038 14.4 0.2 0.15 12.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|320101057|ref|YP_004176649.1| - 0.038 13.7 0.1 0.077 12.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain GTP_EFTU PF00009.27 gi|320101057|ref|YP_004176649.1| - 0.046 13.3 0.0 0.076 12.5 0.0 1.2 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain TrwB_AAD_bind PF10412.9 gi|320101057|ref|YP_004176649.1| - 0.049 12.5 0.1 0.095 11.6 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.12 gi|320101057|ref|YP_004176649.1| - 0.075 12.3 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|320101057|ref|YP_004176649.1| - 0.076 13.4 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|320101057|ref|YP_004176649.1| - 0.083 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF1611_N PF17396.2 gi|320101057|ref|YP_004176649.1| - 0.084 13.1 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain DUF2075 PF09848.9 gi|320101057|ref|YP_004176649.1| - 0.12 11.6 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PRK PF00485.18 gi|320101057|ref|YP_004176649.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.20 gi|320101057|ref|YP_004176649.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Viral_helicase1 PF01443.18 gi|320101057|ref|YP_004176649.1| - 0.15 11.7 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|320101057|ref|YP_004176649.1| - 0.16 12.3 0.1 1.8 8.9 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|320101057|ref|YP_004176649.1| - 0.19 12.2 0.0 0.34 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|320101057|ref|YP_004176649.1| - 0.2 11.9 0.0 0.35 11.1 0.0 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase HTH_3 PF01381.22 gi|320101058|ref|YP_004176650.1| - 2.3e-12 46.7 0.2 1.9e-11 43.8 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|320101058|ref|YP_004176650.1| - 2.8e-07 30.4 2.4 2.9e-07 30.4 0.4 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|320101058|ref|YP_004176650.1| - 5.1e-06 26.7 0.1 1.8e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|320101058|ref|YP_004176650.1| - 0.0001 22.2 1.0 0.00068 19.6 0.0 2.9 4 0 0 4 4 4 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|320101058|ref|YP_004176650.1| - 0.00029 20.7 0.1 0.0041 17.0 0.0 2.8 3 0 0 3 3 3 1 HTH domain HTH_23 PF13384.6 gi|320101058|ref|YP_004176650.1| - 0.0011 18.8 0.1 0.0046 16.7 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain MerR PF00376.23 gi|320101058|ref|YP_004176650.1| - 0.0012 18.5 0.0 0.0029 17.3 0.0 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_17 PF12728.7 gi|320101058|ref|YP_004176650.1| - 0.0046 17.1 0.1 0.014 15.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_22 PF13309.6 gi|320101058|ref|YP_004176650.1| - 0.017 15.1 0.0 0.059 13.5 0.0 1.9 1 0 0 1 1 1 0 HTH domain UPF0180 PF03698.13 gi|320101058|ref|YP_004176650.1| - 0.02 15.0 0.0 0.095 12.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) MerR_1 PF13411.6 gi|320101058|ref|YP_004176650.1| - 0.062 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein PCP_red PF08369.10 gi|320101058|ref|YP_004176650.1| - 0.083 13.1 1.2 1.5 9.1 0.1 3.0 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit HTH_7 PF02796.15 gi|320101058|ref|YP_004176650.1| - 0.11 12.6 0.0 0.34 11.0 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|320101058|ref|YP_004176650.1| - 0.12 12.4 0.0 0.32 11.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix Crp PF00325.20 gi|320101058|ref|YP_004176650.1| - 0.13 11.9 1.6 2.2 8.0 0.1 3.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family Fibrillarin PF01269.17 gi|320101059|ref|YP_004176651.1| - 1.1e-102 342.0 0.0 1.3e-102 341.8 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|320101059|ref|YP_004176651.1| - 0.006 16.4 0.0 0.011 15.5 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|320101059|ref|YP_004176651.1| - 0.089 12.5 0.0 0.18 11.4 0.0 1.4 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Nop PF01798.18 gi|320101060|ref|YP_004176652.1| - 1.8e-69 233.7 0.0 2.4e-69 233.3 0.0 1.1 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin Ribosomal_S30 PF04758.14 gi|320101061|ref|YP_004176653.1| - 1.1e-13 51.1 1.7 1.3e-13 50.9 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S30 Epimerase PF01370.21 gi|320101062|ref|YP_004176654.1| - 7.4e-30 104.2 0.0 8.6e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|320101062|ref|YP_004176654.1| - 1.9e-22 80.2 0.0 6.5e-22 78.4 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|320101062|ref|YP_004176654.1| - 1.3e-14 54.0 0.0 2e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|320101062|ref|YP_004176654.1| - 3.1e-09 36.3 0.0 4.1e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|320101062|ref|YP_004176654.1| - 4.6e-09 35.8 0.1 9.4e-08 31.5 0.1 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|320101062|ref|YP_004176654.1| - 7e-08 32.6 0.0 1.1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|320101062|ref|YP_004176654.1| - 1.1e-06 28.0 0.0 8e-06 25.2 0.0 2.2 1 1 1 2 2 2 1 Male sterility protein NmrA PF05368.13 gi|320101062|ref|YP_004176654.1| - 0.00025 20.7 0.0 0.00042 19.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Peripla_BP_3 PF13377.6 gi|320101062|ref|YP_004176654.1| - 0.12 12.6 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein-like domain DXP_reductoisom PF02670.16 gi|320101062|ref|YP_004176654.1| - 0.15 12.8 0.0 0.39 11.4 0.0 1.8 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Aminotran_1_2 PF00155.21 gi|320101063|ref|YP_004176655.1| - 2.9e-66 224.1 0.0 3.5e-66 223.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|320101063|ref|YP_004176655.1| - 2.4e-07 29.6 0.0 3.5e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|320101063|ref|YP_004176655.1| - 0.002 17.2 0.0 0.0034 16.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|320101063|ref|YP_004176655.1| - 0.029 13.1 0.0 0.41 9.3 0.0 2.4 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Beta_elim_lyase PF01212.21 gi|320101063|ref|YP_004176655.1| - 0.048 12.9 0.0 0.085 12.1 0.0 1.5 1 0 0 1 1 1 0 Beta-eliminating lyase Asparaginase PF00710.20 gi|320101064|ref|YP_004176656.1| - 1.4e-55 187.8 0.0 2.6e-55 186.9 0.0 1.4 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|320101064|ref|YP_004176656.1| - 5.7e-34 116.7 0.0 3.3e-33 114.3 0.0 2.1 2 1 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|320101064|ref|YP_004176656.1| - 1.2e-18 66.1 0.1 2.7e-18 65.0 0.1 1.6 1 0 0 1 1 1 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|320101064|ref|YP_004176656.1| - 0.0058 16.2 0.0 0.14 11.7 0.0 2.1 2 0 0 2 2 2 1 Periplasmic binding protein domain GatB_N PF02934.15 gi|320101065|ref|YP_004176657.1| - 1.9e-70 237.4 0.0 2.6e-70 236.9 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|320101065|ref|YP_004176657.1| - 1.3e-24 86.7 0.3 2.7e-24 85.7 0.3 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|320101065|ref|YP_004176657.1| - 4.3e-19 68.6 0.0 1.2e-18 67.1 0.0 1.9 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|320101065|ref|YP_004176657.1| - 0.00013 22.1 0.4 0.00026 21.1 0.4 1.5 1 0 0 1 1 1 1 Yqey-like protein TIR_2 PF13676.6 gi|320101066|ref|YP_004176658.1| - 0.017 15.7 0.1 0.17 12.5 0.0 1.9 1 1 1 2 2 2 0 TIR domain HGTP_anticodon PF03129.20 gi|320101066|ref|YP_004176658.1| - 0.046 13.9 0.1 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 Anticodon binding domain HTH_8 PF02954.19 gi|320101067|ref|YP_004176659.1| - 1.1e-05 25.1 0.4 1.9e-05 24.4 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_IclR PF09339.10 gi|320101067|ref|YP_004176659.1| - 4.4e-05 23.2 0.3 0.00014 21.6 0.3 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|320101067|ref|YP_004176659.1| - 0.00012 22.1 0.0 0.00029 20.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|320101067|ref|YP_004176659.1| - 0.00014 21.7 0.6 0.014 15.3 0.1 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|320101067|ref|YP_004176659.1| - 0.00025 20.7 0.0 0.00072 19.3 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|320101067|ref|YP_004176659.1| - 0.00071 19.4 0.4 0.0018 18.1 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|320101067|ref|YP_004176659.1| - 0.0011 18.5 0.3 0.0011 18.5 0.3 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_psq PF05225.16 gi|320101067|ref|YP_004176659.1| - 0.0077 16.0 0.0 0.027 14.2 0.0 1.9 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_3 PF01381.22 gi|320101067|ref|YP_004176659.1| - 0.01 15.9 0.1 0.027 14.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_29 PF13551.6 gi|320101067|ref|YP_004176659.1| - 0.013 15.5 0.1 0.027 14.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_20 PF12840.7 gi|320101067|ref|YP_004176659.1| - 0.015 15.4 0.7 0.039 14.0 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|320101067|ref|YP_004176659.1| - 0.025 14.5 0.1 0.057 13.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.19 gi|320101067|ref|YP_004176659.1| - 0.03 14.2 0.1 0.085 12.8 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DEC-1_C PF04626.13 gi|320101067|ref|YP_004176659.1| - 0.051 14.0 0.6 0.084 13.3 0.6 1.3 1 0 0 1 1 1 0 Dec-1 protein, C terminal region Sigma70_r4 PF04545.16 gi|320101067|ref|YP_004176659.1| - 0.085 12.4 0.1 0.18 11.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|320101067|ref|YP_004176659.1| - 0.14 12.0 0.3 0.67 9.9 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family EFP PF01132.20 gi|320101068|ref|YP_004176660.1| - 7.4e-06 25.9 1.3 1.2e-05 25.2 1.3 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain EFP_N PF08207.12 gi|320101068|ref|YP_004176660.1| - 4e-05 23.6 0.2 0.0011 19.0 0.0 2.3 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain CN_hydrolase PF00795.22 gi|320101070|ref|YP_004176662.1| - 2e-05 24.1 0.0 2.5e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Topoisom_bac PF01131.20 gi|320101071|ref|YP_004176663.1| - 1.5e-80 271.3 0.0 2.3e-80 270.6 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|320101071|ref|YP_004176663.1| - 2.8e-24 85.3 0.1 1.3e-23 83.1 0.0 2.2 2 0 0 2 2 2 1 Toprim domain Helicase_C PF00271.31 gi|320101071|ref|YP_004176663.1| - 7.5e-11 42.4 0.0 0.0027 18.0 0.0 3.6 3 0 0 3 3 3 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|320101071|ref|YP_004176663.1| - 1.1e-10 41.5 0.0 4.5e-10 39.6 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase zf_Rg PF17915.1 gi|320101071|ref|YP_004176663.1| - 7e-10 38.2 0.5 2.6e-09 36.3 0.5 2.0 1 0 0 1 1 1 1 Reverse gyrase zinc finger ResIII PF04851.15 gi|320101071|ref|YP_004176663.1| - 4.2e-05 23.6 0.0 9.7e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C_2 PF13307.6 gi|320101071|ref|YP_004176663.1| - 0.016 15.4 0.0 0.046 13.9 0.0 1.9 1 1 0 1 1 1 0 Helicase C-terminal domain Ofd1_CTDD PF10637.9 gi|320101071|ref|YP_004176663.1| - 0.19 11.0 0.0 0.33 10.3 0.0 1.3 1 0 0 1 1 1 0 Oxoglutarate and iron-dependent oxygenase degradation C-term HTH_IclR PF09339.10 gi|320101071|ref|YP_004176663.1| - 1 9.2 5.2 29 4.5 0.0 4.1 4 0 0 4 4 4 0 IclR helix-turn-helix domain zf-dskA_traR PF01258.17 gi|320101071|ref|YP_004176663.1| - 2.8 8.0 5.8 0.48 10.4 1.5 2.0 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.6 gi|320101071|ref|YP_004176663.1| - 3.8 7.1 5.2 8.3 6.0 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain SSF PF00474.17 gi|320101072|ref|YP_004176664.1| - 1.1e-13 50.9 36.5 1.1e-13 50.9 36.5 2.2 1 1 1 2 2 2 1 Sodium:solute symporter family MARVEL PF01284.23 gi|320101073|ref|YP_004176665.1| - 0.036 14.1 1.0 0.04 14.0 1.0 1.1 1 0 0 1 1 1 0 Membrane-associating domain MarR_2 PF12802.7 gi|320101074|ref|YP_004176666.1| - 6.3e-06 26.0 0.5 2.4e-05 24.1 0.3 2.0 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|320101074|ref|YP_004176666.1| - 0.0001 22.7 0.1 0.00033 21.1 0.1 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|320101074|ref|YP_004176666.1| - 0.00026 20.9 0.2 0.00064 19.6 0.2 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|320101074|ref|YP_004176666.1| - 0.0011 18.8 0.2 0.0034 17.3 0.2 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|320101074|ref|YP_004176666.1| - 0.0016 18.5 0.2 0.0051 16.9 0.3 1.7 2 0 0 2 2 1 1 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|320101074|ref|YP_004176666.1| - 0.002 18.0 0.5 0.0056 16.6 0.2 2.0 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain TBPIP PF07106.13 gi|320101074|ref|YP_004176666.1| - 0.0029 17.5 0.0 0.006 16.5 0.0 1.5 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_46 PF15977.5 gi|320101074|ref|YP_004176666.1| - 0.0048 16.9 1.0 0.017 15.1 0.3 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA binding HTH_24 PF13412.6 gi|320101074|ref|YP_004176666.1| - 0.0057 16.2 0.6 0.021 14.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|320101074|ref|YP_004176666.1| - 0.011 15.7 0.3 0.095 12.7 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|320101074|ref|YP_004176666.1| - 0.013 15.4 0.7 0.042 13.7 0.7 2.0 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|320101074|ref|YP_004176666.1| - 0.013 15.7 0.1 0.027 14.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|320101074|ref|YP_004176666.1| - 0.016 15.5 0.1 0.063 13.6 0.1 1.9 2 0 0 2 2 1 0 Transcriptional regulator Cdc6_C PF09079.11 gi|320101074|ref|YP_004176666.1| - 0.018 15.0 0.1 0.053 13.5 0.1 1.7 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_20 PF12840.7 gi|320101074|ref|YP_004176666.1| - 0.041 14.0 0.9 0.092 12.8 0.6 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|320101074|ref|YP_004176666.1| - 0.044 13.6 0.2 0.12 12.2 0.2 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|320101074|ref|YP_004176666.1| - 0.045 14.0 0.3 0.22 11.7 0.1 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain RHH_3 PF12651.7 gi|320101074|ref|YP_004176666.1| - 0.071 13.1 0.1 1.6 8.8 0.0 2.6 2 0 0 2 2 2 0 Ribbon-helix-helix domain B-block_TFIIIC PF04182.12 gi|320101074|ref|YP_004176666.1| - 0.078 13.1 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC UPRTase PF14681.6 gi|320101075|ref|YP_004176667.1| - 2.4e-41 141.5 0.1 2.8e-41 141.3 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|320101075|ref|YP_004176667.1| - 5.6e-07 29.2 0.8 9.7e-07 28.4 0.8 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|320101075|ref|YP_004176667.1| - 0.00046 19.7 0.1 0.0007 19.2 0.1 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase NTP_transferase PF00483.23 gi|320101076|ref|YP_004176668.1| - 1.7e-26 93.3 0.0 2.2e-26 93.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|320101076|ref|YP_004176668.1| - 1e-09 38.9 0.0 1.3e-09 38.7 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_trans_4_4 PF13579.6 gi|320101077|ref|YP_004176669.1| - 1.1e-06 29.2 2.9 9.5e-05 22.9 0.1 2.2 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|320101077|ref|YP_004176669.1| - 5.4e-06 26.5 0.6 0.0067 16.5 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_tran_28_C PF04101.16 gi|320101077|ref|YP_004176669.1| - 1.1e-05 25.5 0.0 1.7e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.20 gi|320101077|ref|YP_004176669.1| - 0.0093 16.0 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain YjeF_N PF03853.15 gi|320101077|ref|YP_004176669.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 YjeF-related protein N-terminus Cation_efflux PF01545.21 gi|320101078|ref|YP_004176670.1| - 2.9e-18 66.3 23.9 3.5e-18 66.1 23.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|320101078|ref|YP_004176670.1| - 8.4e-09 35.4 0.8 1.6e-08 34.6 0.1 1.8 2 0 0 2 2 2 1 Dimerisation domain of Zinc Transporter DUF502 PF04367.13 gi|320101078|ref|YP_004176670.1| - 0.015 15.2 0.3 0.048 13.5 0.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF502) Phage_holin_5_2 PF16079.5 gi|320101078|ref|YP_004176670.1| - 1.9 8.9 6.4 12 6.3 5.0 2.8 1 1 2 3 3 3 0 Phage holin family Hol44, in holin superfamily V VirC1 PF07015.11 gi|320101080|ref|YP_004176672.1| - 0.15 11.4 0.1 0.32 10.3 0.0 1.5 1 1 0 1 1 1 0 VirC1 protein PfkB PF00294.24 gi|320101081|ref|YP_004176673.1| - 2.7e-46 158.3 0.1 3.6e-46 157.8 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Amidohydro_1 PF01979.20 gi|320101081|ref|YP_004176673.1| - 0.069 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Amidohydrolase family AvrB_AvrC PF05394.11 gi|320101081|ref|YP_004176673.1| - 0.071 12.3 0.0 0.097 11.9 0.0 1.1 1 0 0 1 1 1 0 Avirulence protein Phos_pyr_kin PF08543.12 gi|320101081|ref|YP_004176673.1| - 0.094 12.1 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase PNP_UDP_1 PF01048.20 gi|320101082|ref|YP_004176674.1| - 2.8e-38 131.5 0.3 3.4e-38 131.2 0.3 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily YLP PF02757.17 gi|320101082|ref|YP_004176674.1| - 0.1 12.6 0.1 0.28 11.2 0.1 1.8 1 0 0 1 1 1 0 YLP motif Metallophos_2 PF12850.7 gi|320101083|ref|YP_004176675.1| - 1.3e-30 106.8 0.0 1.5e-30 106.6 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|320101083|ref|YP_004176675.1| - 1.7e-08 35.2 0.3 1.1e-05 26.0 0.3 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|320101083|ref|YP_004176675.1| - 0.0011 18.4 0.0 0.046 13.0 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily ArsA_HSP20 PF17886.1 gi|320101084|ref|YP_004176676.1| - 1.3e-11 43.8 0.1 3.2e-11 42.6 0.1 1.7 1 1 1 2 2 2 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|320101084|ref|YP_004176676.1| - 2.6e-10 40.4 2.2 1.1e-08 35.2 2.2 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|320101084|ref|YP_004176676.1| - 9.9e-05 22.5 0.1 0.00016 21.8 0.1 1.3 1 0 0 1 1 1 1 GvpH CS PF04969.16 gi|320101084|ref|YP_004176676.1| - 0.00013 22.9 0.5 0.00023 22.1 0.5 1.4 1 0 0 1 1 1 1 CS domain DPCD PF14913.6 gi|320101084|ref|YP_004176676.1| - 0.0012 18.3 0.1 0.0019 17.6 0.1 1.3 1 0 0 1 1 1 1 DPCD protein family DUF3696 PF12476.8 gi|320101084|ref|YP_004176676.1| - 0.046 14.1 1.5 0.37 11.2 0.7 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3696) T4BSS_DotI_IcmL PF11393.8 gi|320101084|ref|YP_004176676.1| - 0.14 11.7 0.0 0.64 9.5 0.0 1.8 2 0 0 2 2 2 0 Type-IV b secretion system, inner-membrane complex component UPF0047 PF01894.17 gi|320101085|ref|YP_004176677.1| - 5.4e-34 116.8 0.1 6.4e-34 116.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 QRPTase_C PF01729.19 gi|320101086|ref|YP_004176678.1| - 5.5e-27 94.6 0.0 1.4e-26 93.3 0.0 1.6 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|320101086|ref|YP_004176678.1| - 3.5e-06 27.0 0.0 1.3e-05 25.2 0.0 1.9 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_C PF17956.1 gi|320101086|ref|YP_004176678.1| - 1.1e-05 25.8 0.0 2.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain NAPRTase_N PF17767.1 gi|320101086|ref|YP_004176678.1| - 1.6e-05 25.3 0.0 0.074 13.4 0.0 2.3 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DUF2608 PF11019.8 gi|320101087|ref|YP_004176679.1| - 0.1 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2608) NTP_transf_2 PF01909.23 gi|320101088|ref|YP_004176680.1| - 0.0077 16.5 0.0 0.019 15.3 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Metallophos_2 PF12850.7 gi|320101089|ref|YP_004176681.1| - 0.0012 19.1 0.0 0.0015 18.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|320101089|ref|YP_004176681.1| - 0.0089 15.4 0.1 3.3 6.9 0.0 2.2 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Succ_CoA_lig PF13607.6 gi|320101090|ref|YP_004176682.1| - 2.1e-53 179.9 0.1 4.4e-53 178.8 0.1 1.6 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|320101090|ref|YP_004176682.1| - 2.3e-25 89.3 0.3 1.3e-24 86.9 0.1 2.2 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|320101090|ref|YP_004176682.1| - 1.9e-19 70.1 0.3 8.5e-19 68.0 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain MCH PF02289.16 gi|320101090|ref|YP_004176682.1| - 0.037 13.3 0.1 0.079 12.2 0.1 1.4 1 0 0 1 1 1 0 Cyclohydrolase (MCH) F420_oxidored PF03807.17 gi|320101090|ref|YP_004176682.1| - 0.14 12.7 0.9 4.2 8.0 0.3 2.9 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent tRNA_bind PF01588.20 gi|320101091|ref|YP_004176683.1| - 1.8e-26 92.1 0.0 2.1e-26 91.9 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain TYW3 PF02676.14 gi|320101092|ref|YP_004176684.1| - 5.7e-30 104.3 0.0 1.2e-29 103.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase TYW3 tRNA_deacylase PF04414.12 gi|320101093|ref|YP_004176685.1| - 2e-64 216.9 0.1 2.5e-64 216.6 0.1 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF3344 PF11824.8 gi|320101094|ref|YP_004176686.1| - 0.012 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3344) Nuc_deoxyrib_tr PF05014.15 gi|320101095|ref|YP_004176687.1| - 0.039 14.0 0.0 0.039 14.0 0.0 1.1 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Glycos_transf_1 PF00534.20 gi|320101096|ref|YP_004176688.1| - 1.1e-14 54.3 0.0 1.8e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|320101096|ref|YP_004176688.1| - 4.1e-10 40.2 0.0 6.7e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|320101097|ref|YP_004176689.1| - 2.2e-24 85.9 0.0 3.8e-24 85.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|320101097|ref|YP_004176689.1| - 6.5e-12 45.8 0.9 9.1e-12 45.3 0.2 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|320101097|ref|YP_004176689.1| - 6.9e-11 42.7 0.0 1.3e-10 41.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|320101097|ref|YP_004176689.1| - 0.0099 16.3 1.2 0.019 15.4 0.3 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain ALG11_N PF15924.5 gi|320101097|ref|YP_004176689.1| - 0.011 15.8 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 ALG11 mannosyltransferase N-terminus Glyco_trans_1_2 PF13524.6 gi|320101097|ref|YP_004176689.1| - 0.015 15.7 0.0 0.033 14.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF5603 PF18231.1 gi|320101098|ref|YP_004176690.1| - 5e-24 84.6 0.0 8e-24 84.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5603) ParBc PF02195.18 gi|320101098|ref|YP_004176690.1| - 6.1e-13 48.9 0.0 1e-12 48.1 0.0 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|320101098|ref|YP_004176690.1| - 9.4e-06 24.7 0.0 0.098 11.5 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1015) 2-Hacid_dh_C PF02826.19 gi|320101099|ref|YP_004176691.1| - 8.3e-73 243.5 0.0 1.3e-72 242.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|320101099|ref|YP_004176691.1| - 8.9e-36 122.5 0.0 1.1e-35 122.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|320101099|ref|YP_004176691.1| - 2e-06 28.0 0.0 6e-05 23.3 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Nitro_FeMo-Co PF02579.17 gi|320101099|ref|YP_004176691.1| - 0.00019 21.7 0.2 0.82 10.0 0.0 3.1 3 0 0 3 3 3 2 Dinitrogenase iron-molybdenum cofactor IlvN PF07991.12 gi|320101099|ref|YP_004176691.1| - 0.0018 17.9 0.0 0.013 15.1 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|320101099|ref|YP_004176691.1| - 0.0059 16.7 0.0 0.015 15.3 0.0 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TrkA_N PF02254.18 gi|320101099|ref|YP_004176691.1| - 0.0069 16.6 0.6 0.54 10.5 0.0 3.4 4 0 0 4 4 4 1 TrkA-N domain Shikimate_DH PF01488.20 gi|320101099|ref|YP_004176691.1| - 0.0075 16.3 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|320101099|ref|YP_004176691.1| - 0.014 15.9 0.0 0.076 13.6 0.0 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|320101099|ref|YP_004176691.1| - 0.022 15.6 0.0 0.1 13.4 0.0 2.2 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|320101099|ref|YP_004176691.1| - 0.029 14.6 0.0 0.38 11.0 0.0 2.7 2 2 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Aminotran_5 PF00266.19 gi|320101100|ref|YP_004176692.1| - 3.1e-37 128.4 0.0 3.5e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|320101100|ref|YP_004176692.1| - 2.8e-05 23.5 0.0 4.5e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.16 gi|320101100|ref|YP_004176692.1| - 0.00086 18.3 0.0 0.0013 17.7 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Peptidase_M24 PF00557.24 gi|320101103|ref|YP_004176695.1| - 2.7e-59 200.4 0.1 3.6e-59 200.0 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|320101103|ref|YP_004176695.1| - 3.2e-16 60.2 0.0 5.8e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Inositol_P PF00459.25 gi|320101104|ref|YP_004176696.1| - 6.9e-16 58.6 0.0 8.8e-16 58.2 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|320101104|ref|YP_004176696.1| - 2.5e-08 33.7 0.0 3.9e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain tRNA-synt_2 PF00152.20 gi|320101107|ref|YP_004176699.1| - 2.7e-85 286.2 0.1 3.7e-85 285.8 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|320101107|ref|YP_004176699.1| - 0.023 14.2 0.2 0.066 12.7 0.1 1.7 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) PaRep2b PF07775.11 gi|320101107|ref|YP_004176699.1| - 0.061 11.8 0.0 0.16 10.4 0.1 1.6 2 0 0 2 2 2 0 PaRep2b protein PadR PF03551.14 gi|320101108|ref|YP_004176700.1| - 3.2e-06 27.0 0.0 4.8e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PaaX PF07848.12 gi|320101108|ref|YP_004176700.1| - 8.5e-05 22.7 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein Penicillinase_R PF03965.16 gi|320101108|ref|YP_004176700.1| - 0.0002 21.7 0.2 0.00031 21.1 0.0 1.4 2 0 0 2 2 2 1 Penicillinase repressor RTP PF02334.16 gi|320101108|ref|YP_004176700.1| - 0.029 15.0 0.0 0.047 14.3 0.0 1.4 1 1 0 1 1 1 0 Replication terminator protein CobS_N PF12556.8 gi|320101108|ref|YP_004176700.1| - 0.034 13.9 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Cobaltochelatase CobS subunit N terminal Inos-1-P_synth PF01658.17 gi|320101109|ref|YP_004176701.1| - 1e-18 67.6 0.0 1.9e-18 66.7 0.0 1.5 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|320101109|ref|YP_004176701.1| - 0.0062 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Med26 PF08711.11 gi|320101109|ref|YP_004176701.1| - 0.09 12.8 0.1 1.4 9.0 0.1 2.4 1 1 0 1 1 1 0 TFIIS helical bundle-like domain ADK PF00406.22 gi|320101112|ref|YP_004176704.1| - 3.8e-51 173.1 0.0 4.6e-51 172.9 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|320101112|ref|YP_004176704.1| - 5.7e-24 85.1 0.0 8.8e-24 84.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|320101112|ref|YP_004176704.1| - 2.5e-11 43.4 4.7 4e-11 42.7 4.7 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|320101112|ref|YP_004176704.1| - 1.1e-08 35.6 0.0 1.9e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|320101112|ref|YP_004176704.1| - 0.0015 18.9 0.6 2 8.6 0.0 2.7 2 1 1 3 3 3 2 Hydin Adenylate kinase-like domain AAA_28 PF13521.6 gi|320101112|ref|YP_004176704.1| - 0.037 14.3 0.0 0.099 12.9 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|320101112|ref|YP_004176704.1| - 0.071 13.3 0.0 0.15 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|320101112|ref|YP_004176704.1| - 0.093 12.4 0.0 16 5.1 0.0 2.6 3 0 0 3 3 3 0 Thymidylate kinase HTH_24 PF13412.6 gi|320101113|ref|YP_004176705.1| - 3.2e-06 26.6 0.3 6.2e-06 25.7 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|320101113|ref|YP_004176705.1| - 4.5e-05 23.2 0.6 7.6e-05 22.5 0.6 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain KOW PF00467.29 gi|320101113|ref|YP_004176705.1| - 0.001 19.0 4.6 0.042 13.8 2.3 2.4 2 0 0 2 2 2 1 KOW motif HTH_10 PF04967.12 gi|320101113|ref|YP_004176705.1| - 0.0066 16.2 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GntR PF00392.21 gi|320101113|ref|YP_004176705.1| - 0.01 15.5 0.1 0.019 14.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|320101113|ref|YP_004176705.1| - 0.013 15.4 0.2 0.034 14.0 0.1 1.7 1 1 0 1 1 1 0 MarR family TrmB PF01978.19 gi|320101113|ref|YP_004176705.1| - 0.02 14.8 0.1 0.057 13.3 0.1 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|320101113|ref|YP_004176705.1| - 0.038 13.9 0.1 0.063 13.2 0.1 1.3 1 0 0 1 1 1 0 MarR family DUF2089 PF09862.9 gi|320101113|ref|YP_004176705.1| - 0.046 13.8 0.0 0.079 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_11 PF08279.12 gi|320101113|ref|YP_004176705.1| - 0.064 13.2 0.2 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 HTH domain HTH_50 PF18024.1 gi|320101113|ref|YP_004176705.1| - 0.098 12.3 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Mga PF08280.11 gi|320101113|ref|YP_004176705.1| - 0.17 12.0 0.0 0.25 11.4 0.0 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain LexA_DNA_bind PF01726.16 gi|320101113|ref|YP_004176705.1| - 0.18 11.6 0.1 0.35 10.7 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Aldo_ket_red PF00248.21 gi|320101114|ref|YP_004176706.1| - 7.4e-52 176.4 0.1 5.9e-50 170.1 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family CxxCxxCC PF03692.15 gi|320101115|ref|YP_004176707.1| - 4.9e-10 40.0 0.1 7.9e-10 39.3 0.1 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain EndIII_4Fe-2S PF10576.9 gi|320101116|ref|YP_004176708.1| - 0.019 15.3 0.5 0.025 14.9 0.5 1.2 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III HTH_24 PF13412.6 gi|320101118|ref|YP_004176710.1| - 8.3e-10 38.1 0.1 1.6e-09 37.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|320101118|ref|YP_004176710.1| - 2.2e-09 37.3 0.0 3.5e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|320101118|ref|YP_004176710.1| - 6e-09 35.7 0.0 1.6e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|320101118|ref|YP_004176710.1| - 2.4e-08 33.6 0.0 4.4e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|320101118|ref|YP_004176710.1| - 2.4e-05 24.7 0.1 5.3e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|320101118|ref|YP_004176710.1| - 2.6e-05 24.1 0.0 5.1e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 MarR family RNA_pol_Rpc34 PF05158.12 gi|320101118|ref|YP_004176710.1| - 0.00014 21.3 0.0 0.00023 20.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_Crp_2 PF13545.6 gi|320101118|ref|YP_004176710.1| - 0.00029 20.8 0.1 0.00062 19.7 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|320101118|ref|YP_004176710.1| - 0.00075 19.3 0.0 0.0035 17.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|320101118|ref|YP_004176710.1| - 0.0011 19.1 0.0 0.0022 18.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|320101118|ref|YP_004176710.1| - 0.0011 19.1 0.0 0.028 14.6 0.0 2.5 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|320101118|ref|YP_004176710.1| - 0.0015 18.4 0.4 0.0059 16.5 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|320101118|ref|YP_004176710.1| - 0.003 17.5 0.1 0.014 15.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|320101118|ref|YP_004176710.1| - 0.0074 16.2 0.0 0.018 15.0 0.0 1.7 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|320101118|ref|YP_004176710.1| - 0.0077 15.7 0.1 0.014 14.9 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 B-block_TFIIIC PF04182.12 gi|320101118|ref|YP_004176710.1| - 0.019 15.1 0.0 0.036 14.2 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_AsnC-type PF13404.6 gi|320101118|ref|YP_004176710.1| - 0.032 14.1 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|320101118|ref|YP_004176710.1| - 0.042 13.9 0.1 0.072 13.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix MucBP_2 PF17965.1 gi|320101118|ref|YP_004176710.1| - 0.11 13.1 2.1 2.5 8.7 0.0 2.7 3 0 0 3 3 2 0 Mucin binding domain HemN_C PF06969.16 gi|320101118|ref|YP_004176710.1| - 0.12 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain HTH_1 PF00126.27 gi|320101118|ref|YP_004176710.1| - 0.14 12.2 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 gi|320101118|ref|YP_004176710.1| - 0.14 12.5 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.6 gi|320101118|ref|YP_004176710.1| - 0.16 12.1 0.1 0.37 11.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DNA_primase_lrg PF04104.14 gi|320101120|ref|YP_004176712.1| - 2.2e-29 102.7 0.0 5.8e-29 101.3 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Acetyltransf_CG PF14542.6 gi|320101123|ref|YP_004176715.1| - 6.5e-22 77.5 0.0 9.7e-22 76.9 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 gi|320101123|ref|YP_004176715.1| - 1.2e-05 25.6 0.0 1.8e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|320101123|ref|YP_004176715.1| - 0.00047 20.5 0.0 0.00069 20.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|320101123|ref|YP_004176715.1| - 0.0067 16.5 0.0 0.029 14.4 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|320101123|ref|YP_004176715.1| - 0.014 14.8 0.0 0.023 14.1 0.0 1.3 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_10 PF13673.7 gi|320101123|ref|YP_004176715.1| - 0.032 14.2 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ThiS PF02597.20 gi|320101124|ref|YP_004176716.1| - 3.7e-11 43.5 0.0 4.4e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 ThiS family Ribosomal_L44 PF00935.19 gi|320101125|ref|YP_004176717.1| - 6.8e-28 97.0 13.1 9.3e-28 96.5 13.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zinc_ribbon_2 PF13240.6 gi|320101125|ref|YP_004176717.1| - 0.0054 16.4 2.5 1.1 9.0 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Ribosomal_L9_C PF03948.14 gi|320101125|ref|YP_004176717.1| - 0.02 15.3 0.3 0.034 14.6 0.3 1.4 1 0 0 1 1 1 0 Ribosomal protein L9, C-terminal domain zinc_ribbon_4 PF13717.6 gi|320101125|ref|YP_004176717.1| - 0.021 14.7 4.6 0.11 12.4 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|320101125|ref|YP_004176717.1| - 0.032 14.1 6.5 0.52 10.2 1.5 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS CpXC PF14353.6 gi|320101125|ref|YP_004176717.1| - 0.069 13.2 2.9 0.73 9.9 0.2 2.1 1 1 0 2 2 2 0 CpXC protein Ribosomal_L33 PF00471.20 gi|320101125|ref|YP_004176717.1| - 0.07 13.6 0.4 0.07 13.6 0.4 3.2 2 1 0 2 2 1 0 Ribosomal protein L33 zf-ACC PF17848.1 gi|320101125|ref|YP_004176717.1| - 0.13 12.4 2.3 1.8 8.7 0.2 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF1660 PF07874.11 gi|320101125|ref|YP_004176717.1| - 0.2 12.2 3.2 0.46 11.0 0.1 2.1 1 1 1 2 2 2 0 Prophage protein (DUF1660) zinc_ribbon_15 PF17032.5 gi|320101125|ref|YP_004176717.1| - 0.22 12.3 3.6 1.3 9.9 3.6 1.9 1 1 0 1 1 1 0 zinc-ribbon family zf-Mss51 PF13824.6 gi|320101125|ref|YP_004176717.1| - 0.22 11.7 4.0 1.8 8.7 4.3 2.0 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.11 gi|320101125|ref|YP_004176717.1| - 0.26 11.2 0.2 0.26 11.2 0.2 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain CxC5 PF18718.1 gi|320101125|ref|YP_004176717.1| - 0.6 10.2 6.3 2.8 8.0 1.3 2.1 1 1 1 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases Ribosomal_S8e PF01201.22 gi|320101125|ref|YP_004176717.1| - 0.75 10.0 5.4 0.93 9.7 5.4 1.1 1 0 0 1 1 1 0 Ribosomal protein S8e RecR PF02132.15 gi|320101125|ref|YP_004176717.1| - 0.75 9.4 3.6 0.61 9.7 0.3 2.1 2 0 0 2 2 2 0 RecR protein Ribosomal_S27e PF01667.17 gi|320101126|ref|YP_004176718.1| - 1.8e-17 62.8 1.2 2.1e-17 62.5 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|320101126|ref|YP_004176718.1| - 0.001 18.5 0.4 0.0015 18.0 0.4 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|320101126|ref|YP_004176718.1| - 0.0021 17.8 0.6 0.46 10.3 0.1 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain HypA PF01155.19 gi|320101126|ref|YP_004176718.1| - 0.0086 16.1 0.2 0.01 15.9 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|320101126|ref|YP_004176718.1| - 0.009 16.1 0.6 0.014 15.5 0.6 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|320101126|ref|YP_004176718.1| - 0.015 15.3 0.4 0.021 14.8 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2_3 PF13878.6 gi|320101126|ref|YP_004176718.1| - 0.032 14.1 0.1 8.6 6.3 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_2 PF13240.6 gi|320101126|ref|YP_004176718.1| - 0.057 13.2 3.0 1.3 8.9 3.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|320101126|ref|YP_004176718.1| - 0.087 12.7 1.7 2.4 8.1 0.1 2.1 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Aminotran_1_2 PF00155.21 gi|320101126|ref|YP_004176718.1| - 0.089 11.9 0.0 0.091 11.9 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class I and II DNA_RNApol_7kD PF03604.13 gi|320101126|ref|YP_004176718.1| - 0.095 12.4 3.4 0.51 10.1 3.3 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit ADK_lid PF05191.14 gi|320101126|ref|YP_004176718.1| - 0.096 12.7 2.3 0.56 10.2 2.3 1.9 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-RRN7 PF11781.8 gi|320101126|ref|YP_004176718.1| - 0.19 11.5 2.7 1.5 8.6 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-BED PF02892.15 gi|320101126|ref|YP_004176718.1| - 1 9.5 4.1 14 5.8 0.1 2.2 1 1 1 2 2 2 0 BED zinc finger zf-trcl PF13451.6 gi|320101126|ref|YP_004176718.1| - 1 9.3 4.5 4.2 7.3 0.3 2.2 1 1 1 2 2 2 0 Probable zinc-ribbon domain Phage_holin_3_6 PF07332.11 gi|320101127|ref|YP_004176719.1| - 0.00015 21.7 0.7 0.0002 21.4 0.7 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III LMBR1 PF04791.16 gi|320101127|ref|YP_004176719.1| - 0.00077 18.5 0.0 0.00092 18.2 0.0 1.0 1 0 0 1 1 1 1 LMBR1-like membrane protein DUF4131 PF13567.6 gi|320101127|ref|YP_004176719.1| - 0.065 12.9 0.1 0.079 12.6 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2254 PF10011.9 gi|320101127|ref|YP_004176719.1| - 0.074 11.9 0.0 0.088 11.6 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) T2SSM PF04612.12 gi|320101127|ref|YP_004176719.1| - 0.087 12.9 1.2 11 6.0 0.0 2.0 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M DPM2 PF07297.12 gi|320101127|ref|YP_004176719.1| - 0.26 11.6 9.1 9 6.7 9.1 2.0 1 1 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) N6_N4_Mtase PF01555.18 gi|320101128|ref|YP_004176720.1| - 5.3e-27 95.0 0.0 3e-14 53.3 0.0 2.1 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|320101128|ref|YP_004176720.1| - 9.4e-09 35.2 0.1 1.1e-07 31.8 0.1 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 baeRF_family3 PF18845.1 gi|320101128|ref|YP_004176720.1| - 0.00096 19.5 0.0 0.0021 18.4 0.0 1.5 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 3 Methyltransf_11 PF08241.12 gi|320101128|ref|YP_004176720.1| - 0.00098 19.7 0.0 1.4 9.6 0.0 2.8 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_15 PF09445.10 gi|320101128|ref|YP_004176720.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|320101128|ref|YP_004176720.1| - 0.019 14.6 0.0 0.076 12.6 0.0 2.0 1 1 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|320101128|ref|YP_004176720.1| - 0.028 15.1 0.0 8.1 7.2 0.1 3.1 2 1 0 2 2 2 0 Methyltransferase domain Met_10 PF02475.16 gi|320101128|ref|YP_004176720.1| - 0.061 13.1 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein PrmA PF06325.13 gi|320101128|ref|YP_004176720.1| - 0.063 12.7 0.0 0.096 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Hemerythrin PF01814.23 gi|320101129|ref|YP_004176721.1| - 0.00039 21.0 0.3 0.00039 21.0 0.3 1.7 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain Thiamine_BP PF01910.17 gi|320101130|ref|YP_004176722.1| - 5.3e-23 80.7 0.4 6.3e-23 80.5 0.4 1.1 1 0 0 1 1 1 1 Thiamine-binding protein tRNA-synt_2b PF00587.25 gi|320101130|ref|YP_004176722.1| - 0.15 12.0 0.0 0.22 11.4 0.0 1.3 1 1 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) DivIC PF04977.15 gi|320101131|ref|YP_004176723.1| - 1.1e-06 28.3 1.9 2.2e-06 27.3 1.9 1.5 1 0 0 1 1 1 1 Septum formation initiator ZapB PF06005.12 gi|320101131|ref|YP_004176723.1| - 1.6e-06 28.4 6.7 2.4e-06 27.9 6.0 1.7 2 0 0 2 2 1 1 Cell division protein ZapB ADIP PF11559.8 gi|320101131|ref|YP_004176723.1| - 2e-05 24.7 2.7 2.9e-05 24.2 2.7 1.2 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding bZIP_1 PF00170.21 gi|320101131|ref|YP_004176723.1| - 4.9e-05 23.3 2.0 0.00012 22.1 2.0 1.6 1 0 0 1 1 1 1 bZIP transcription factor CENP-F_leu_zip PF10473.9 gi|320101131|ref|YP_004176723.1| - 7.2e-05 22.8 3.3 9.3e-05 22.5 2.7 1.4 2 0 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Leu_zip PF15294.6 gi|320101131|ref|YP_004176723.1| - 7.4e-05 22.4 2.6 0.0001 21.9 2.6 1.2 1 0 0 1 1 1 1 Leucine zipper HAP1_N PF04849.13 gi|320101131|ref|YP_004176723.1| - 9.7e-05 21.7 0.3 9.7e-05 21.7 0.3 1.3 1 0 0 1 1 1 1 HAP1 N-terminal conserved region FlaC_arch PF05377.11 gi|320101131|ref|YP_004176723.1| - 0.00048 20.5 8.1 0.0026 18.1 1.6 2.5 1 1 1 2 2 2 2 Flagella accessory protein C (FlaC) KASH_CCD PF14662.6 gi|320101131|ref|YP_004176723.1| - 0.00048 20.0 1.5 0.00064 19.6 1.5 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Atg14 PF10186.9 gi|320101131|ref|YP_004176723.1| - 0.00062 18.9 0.8 0.00073 18.7 0.8 1.1 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 DHR10 PF18595.1 gi|320101131|ref|YP_004176723.1| - 0.00077 19.5 3.2 0.0011 19.0 3.2 1.3 1 0 0 1 1 1 1 Designed helical repeat protein 10 domain BLOC1_2 PF10046.9 gi|320101131|ref|YP_004176723.1| - 0.00093 19.5 4.1 0.0023 18.2 4.0 1.7 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 PspA_IM30 PF04012.12 gi|320101131|ref|YP_004176723.1| - 0.0011 18.6 3.6 0.0019 17.8 3.6 1.3 1 0 0 1 1 1 1 PspA/IM30 family Cep57_MT_bd PF06657.13 gi|320101131|ref|YP_004176723.1| - 0.0013 19.2 3.9 0.061 13.8 2.8 2.7 2 1 0 2 2 2 1 Centrosome microtubule-binding domain of Cep57 APG6_N PF17675.1 gi|320101131|ref|YP_004176723.1| - 0.0015 19.1 2.3 0.0019 18.7 2.3 1.3 1 0 0 1 1 1 1 Apg6 coiled-coil region Spc7 PF08317.11 gi|320101131|ref|YP_004176723.1| - 0.0016 17.4 2.5 0.0019 17.1 2.5 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein YkyA PF10368.9 gi|320101131|ref|YP_004176723.1| - 0.0019 17.9 0.6 0.0027 17.4 0.6 1.2 1 0 0 1 1 1 1 Putative cell-wall binding lipoprotein Filament PF00038.21 gi|320101131|ref|YP_004176723.1| - 0.0021 17.7 2.3 0.0032 17.1 2.3 1.2 1 0 0 1 1 1 1 Intermediate filament protein bZIP_2 PF07716.15 gi|320101131|ref|YP_004176723.1| - 0.0023 18.0 5.0 0.0023 18.0 5.0 1.8 2 0 0 2 2 1 1 Basic region leucine zipper AAA_13 PF13166.6 gi|320101131|ref|YP_004176723.1| - 0.0023 16.6 0.6 0.0026 16.5 0.6 1.1 1 0 0 1 1 1 1 AAA domain Wtap PF17098.5 gi|320101131|ref|YP_004176723.1| - 0.0035 17.3 4.9 0.006 16.5 4.9 1.3 1 0 0 1 1 1 1 WTAP/Mum2p family Sipho_Gp157 PF05565.11 gi|320101131|ref|YP_004176723.1| - 0.0038 17.2 1.1 0.0051 16.8 0.6 1.5 2 0 0 2 2 1 1 Siphovirus Gp157 TPR_MLP1_2 PF07926.12 gi|320101131|ref|YP_004176723.1| - 0.0044 17.1 2.3 0.0079 16.2 2.3 1.4 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein HALZ PF02183.18 gi|320101131|ref|YP_004176723.1| - 0.0045 17.2 2.8 0.0077 16.4 2.1 1.8 1 1 0 1 1 1 1 Homeobox associated leucine zipper DUF4140 PF13600.6 gi|320101131|ref|YP_004176723.1| - 0.0045 17.4 0.5 0.0076 16.7 0.5 1.5 1 0 0 1 1 1 1 N-terminal domain of unknown function (DUF4140) GCN5L1 PF06320.13 gi|320101131|ref|YP_004176723.1| - 0.0047 17.1 0.8 0.011 15.9 0.8 1.5 2 0 0 2 2 1 1 GCN5-like protein 1 (GCN5L1) Phage_GP20 PF06810.11 gi|320101131|ref|YP_004176723.1| - 0.0054 16.6 0.4 0.0072 16.1 0.4 1.2 1 0 0 1 1 1 1 Phage minor structural protein GP20 Syntaxin-6_N PF09177.11 gi|320101131|ref|YP_004176723.1| - 0.0055 17.2 1.5 0.0089 16.6 1.5 1.5 1 1 0 1 1 1 1 Syntaxin 6, N-terminal EzrA PF06160.12 gi|320101131|ref|YP_004176723.1| - 0.0077 14.5 1.4 0.009 14.2 1.4 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA DUF4618 PF15397.6 gi|320101131|ref|YP_004176723.1| - 0.0077 15.7 0.9 0.011 15.2 0.9 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) DUF812 PF05667.11 gi|320101131|ref|YP_004176723.1| - 0.011 14.7 0.5 0.011 14.6 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) THOC7 PF05615.13 gi|320101131|ref|YP_004176723.1| - 0.011 16.1 0.4 0.015 15.6 0.4 1.2 1 0 0 1 1 1 0 Tho complex subunit 7 CENP-Q PF13094.6 gi|320101131|ref|YP_004176723.1| - 0.012 15.8 1.2 0.023 14.9 1.2 1.5 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF1664 PF07889.12 gi|320101131|ref|YP_004176723.1| - 0.014 15.4 0.3 0.02 14.9 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Shugoshin_N PF07558.11 gi|320101131|ref|YP_004176723.1| - 0.014 15.2 3.4 0.81 9.6 0.6 3.0 2 1 1 3 3 2 0 Shugoshin N-terminal coiled-coil region TMF_DNA_bd PF12329.8 gi|320101131|ref|YP_004176723.1| - 0.015 15.3 8.5 0.025 14.6 7.5 1.9 2 0 0 2 2 1 0 TATA element modulatory factor 1 DNA binding HTH_23 PF13384.6 gi|320101131|ref|YP_004176723.1| - 0.017 14.9 0.0 0.047 13.5 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain DUF773 PF05600.12 gi|320101131|ref|YP_004176723.1| - 0.017 13.8 1.5 0.023 13.5 1.5 1.2 1 0 0 1 1 1 0 CDK5 regulatory subunit-associated protein 3 TcpS PF17456.2 gi|320101131|ref|YP_004176723.1| - 0.018 15.1 0.9 0.028 14.5 0.9 1.3 1 0 0 1 1 1 0 Toxin-coregulated pilus protein S Mod_r PF07200.13 gi|320101131|ref|YP_004176723.1| - 0.019 15.1 2.1 0.028 14.5 2.1 1.3 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Tropomyosin_1 PF12718.7 gi|320101131|ref|YP_004176723.1| - 0.023 14.8 5.6 0.033 14.3 5.6 1.2 1 0 0 1 1 1 0 Tropomyosin like Snapin_Pallidin PF14712.6 gi|320101131|ref|YP_004176723.1| - 0.024 15.1 3.2 0.073 13.5 3.2 1.8 1 1 0 1 1 1 0 Snapin/Pallidin LPP PF04728.13 gi|320101131|ref|YP_004176723.1| - 0.024 15.0 1.0 0.39 11.1 0.5 2.4 1 1 1 2 2 2 0 Lipoprotein leucine-zipper ATG16 PF08614.11 gi|320101131|ref|YP_004176723.1| - 0.029 14.6 4.2 0.044 14.0 4.2 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Herpes_BLRF2 PF05812.12 gi|320101131|ref|YP_004176723.1| - 0.031 14.4 1.6 0.054 13.6 1.6 1.4 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein GAS PF13851.6 gi|320101131|ref|YP_004176723.1| - 0.033 13.5 5.1 0.049 13.0 5.1 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Sigma70_r4_2 PF08281.12 gi|320101131|ref|YP_004176723.1| - 0.035 13.8 0.7 0.095 12.4 0.0 2.1 2 0 0 2 2 1 0 Sigma-70, region 4 TSC22 PF01166.18 gi|320101131|ref|YP_004176723.1| - 0.038 14.3 10.2 0.91 9.9 0.4 3.6 3 1 1 4 4 2 0 TSC-22/dip/bun family DUF2730 PF10805.8 gi|320101131|ref|YP_004176723.1| - 0.046 13.8 0.3 0.08 13.0 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) GrpE PF01025.19 gi|320101131|ref|YP_004176723.1| - 0.049 13.3 2.6 0.073 12.7 2.6 1.3 1 0 0 1 1 1 0 GrpE DUF724 PF05266.14 gi|320101131|ref|YP_004176723.1| - 0.057 13.3 0.9 0.073 12.9 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TMPIT PF07851.13 gi|320101131|ref|YP_004176723.1| - 0.063 12.5 1.2 0.087 12.1 1.2 1.2 1 0 0 1 1 1 0 TMPIT-like protein DUF3450 PF11932.8 gi|320101131|ref|YP_004176723.1| - 0.069 12.4 2.4 0.096 12.0 2.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Prefoldin_2 PF01920.20 gi|320101131|ref|YP_004176723.1| - 0.07 13.1 7.7 0.3 11.1 7.5 2.0 1 1 1 2 2 2 0 Prefoldin subunit Spc24 PF08286.11 gi|320101131|ref|YP_004176723.1| - 0.077 13.2 3.3 0.15 12.3 3.3 1.6 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 M PF02370.16 gi|320101131|ref|YP_004176723.1| - 0.081 13.5 2.1 0.081 13.5 2.1 2.7 2 0 0 2 2 2 0 M protein repeat NPV_P10 PF05531.12 gi|320101131|ref|YP_004176723.1| - 0.085 13.3 0.9 0.26 11.8 1.0 1.8 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF16 PF01519.16 gi|320101131|ref|YP_004176723.1| - 0.087 13.3 3.5 0.16 12.5 3.6 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF5082 PF16888.5 gi|320101131|ref|YP_004176723.1| - 0.093 13.0 3.5 0.16 12.2 2.7 1.9 2 0 0 2 2 1 0 Domain of unknown function (DUF5082) Fmp27_WPPW PF10359.9 gi|320101131|ref|YP_004176723.1| - 0.11 11.3 1.4 0.13 11.1 1.4 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain YabA PF06156.13 gi|320101131|ref|YP_004176723.1| - 0.12 13.0 3.2 0.36 11.5 3.2 1.8 1 1 0 1 1 1 0 Initiation control protein YabA Fib_alpha PF08702.10 gi|320101131|ref|YP_004176723.1| - 0.12 12.5 1.6 0.32 11.2 0.7 1.5 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Prefoldin PF02996.17 gi|320101131|ref|YP_004176723.1| - 0.13 12.2 3.9 0.19 11.6 1.2 2.1 1 1 1 2 2 2 0 Prefoldin subunit Swi5 PF07061.11 gi|320101131|ref|YP_004176723.1| - 0.13 12.3 4.0 0.31 11.2 4.0 1.6 1 0 0 1 1 1 0 Swi5 Seryl_tRNA_N PF02403.22 gi|320101131|ref|YP_004176723.1| - 0.15 12.3 4.7 0.38 11.0 4.7 1.7 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain CASP_C PF08172.12 gi|320101131|ref|YP_004176723.1| - 0.27 10.6 4.3 0.3 10.4 2.4 1.9 2 1 0 2 2 2 0 CASP C terminal WD40_alt PF14077.6 gi|320101131|ref|YP_004176723.1| - 0.31 10.9 4.5 0.94 9.4 1.3 2.6 1 1 1 2 2 2 0 Alternative WD40 repeat motif IFP_35_N PF07334.13 gi|320101131|ref|YP_004176723.1| - 0.35 11.0 4.2 0.34 11.0 2.8 1.7 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus Cnn_1N PF07989.11 gi|320101131|ref|YP_004176723.1| - 0.36 11.0 6.7 0.59 10.3 6.7 1.3 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 ORF6C PF10552.9 gi|320101131|ref|YP_004176723.1| - 0.39 10.8 2.9 0.6 10.2 2.9 1.3 1 0 0 1 1 1 0 ORF6C domain SlyX PF04102.12 gi|320101131|ref|YP_004176723.1| - 0.41 11.3 4.2 1.1 10.0 4.2 1.7 1 0 0 1 1 1 0 SlyX Csm1_N PF18504.1 gi|320101131|ref|YP_004176723.1| - 0.51 10.7 6.9 1.8 9.0 6.6 2.0 1 1 1 2 2 2 0 Csm1 N-terminal domain Med9 PF07544.13 gi|320101131|ref|YP_004176723.1| - 0.57 10.3 5.3 2.6 8.2 4.7 2.2 2 1 0 2 2 1 0 RNA polymerase II transcription mediator complex subunit 9 ABC_tran_CTD PF16326.5 gi|320101131|ref|YP_004176723.1| - 0.66 10.3 6.2 2.1 8.7 6.2 2.0 1 1 0 1 1 1 0 ABC transporter C-terminal domain XhlA PF10779.9 gi|320101131|ref|YP_004176723.1| - 1.4 9.2 5.0 2.5 8.4 5.0 1.4 1 0 0 1 1 1 0 Haemolysin XhlA DUF5320 PF17253.2 gi|320101131|ref|YP_004176723.1| - 7 7.8 5.1 58 4.8 4.6 2.1 1 1 0 1 1 1 0 Family of unknown function (DUF5320) Peptidase_M19 PF01244.21 gi|320101132|ref|YP_004176724.1| - 1.3e-71 241.3 0.0 1.6e-71 241.1 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 gi|320101132|ref|YP_004176724.1| - 0.00035 20.5 0.0 0.0029 17.4 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase Aminotran_5 PF00266.19 gi|320101133|ref|YP_004176725.1| - 3.9e-144 480.2 0.0 4.5e-144 480.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|320101133|ref|YP_004176725.1| - 1.8e-08 34.1 0.0 2.6e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|320101133|ref|YP_004176725.1| - 2.6e-07 29.5 0.0 3e-06 26.0 0.0 2.2 3 0 0 3 3 3 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|320101133|ref|YP_004176725.1| - 2.9e-05 23.5 0.0 3.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|320101133|ref|YP_004176725.1| - 0.0098 14.9 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase FAM195 PF14799.6 gi|320101133|ref|YP_004176725.1| - 0.16 12.4 0.3 0.3 11.5 0.3 1.4 1 0 0 1 1 1 0 FAM195 family Amidohydro_1 PF01979.20 gi|320101135|ref|YP_004176727.1| - 1.9e-63 214.9 0.0 2.3e-63 214.6 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|320101135|ref|YP_004176727.1| - 9.9e-17 61.5 0.8 1.3e-12 48.0 0.1 2.1 2 0 0 2 2 2 2 Amidohydrolase family Adenine_deam_C PF13382.6 gi|320101136|ref|YP_004176728.1| - 8.4e-60 201.0 0.2 3.6e-59 198.9 0.1 2.0 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|320101136|ref|YP_004176728.1| - 5.9e-27 94.9 0.0 8.9e-26 91.0 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|320101136|ref|YP_004176728.1| - 1.3e-09 38.0 1.4 0.00094 18.8 0.3 2.4 2 0 0 2 2 2 2 Amidohydrolase family CRISPR_Cse2 PF09485.10 gi|320101136|ref|YP_004176728.1| - 0.18 12.3 0.0 0.72 10.4 0.0 1.9 2 0 0 2 2 2 0 CRISPR-associated protein Cse2 (CRISPR_cse2) ABC_tran PF00005.27 gi|320101138|ref|YP_004176730.1| - 3.3e-23 82.7 0.0 4.5e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320101138|ref|YP_004176730.1| - 2.1e-12 47.5 0.7 3.9e-05 23.6 0.6 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320101138|ref|YP_004176730.1| - 7.1e-09 35.4 0.0 0.0025 17.3 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|320101138|ref|YP_004176730.1| - 3.1e-05 23.6 0.1 6e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|320101138|ref|YP_004176730.1| - 5.6e-05 23.7 0.0 6e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|320101138|ref|YP_004176730.1| - 0.0021 17.5 0.0 0.0035 16.8 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 gi|320101138|ref|YP_004176730.1| - 0.0026 17.4 0.1 0.0039 16.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|320101138|ref|YP_004176730.1| - 0.0029 17.4 0.0 0.0038 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|320101138|ref|YP_004176730.1| - 0.015 15.2 0.2 0.024 14.6 0.2 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|320101138|ref|YP_004176730.1| - 0.03 14.7 0.0 0.045 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|320101138|ref|YP_004176730.1| - 0.034 13.8 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|320101138|ref|YP_004176730.1| - 0.039 14.1 0.5 0.059 13.5 0.5 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|320101138|ref|YP_004176730.1| - 0.048 13.4 0.1 0.077 12.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|320101138|ref|YP_004176730.1| - 0.057 12.3 0.0 0.078 11.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Zeta_toxin PF06414.12 gi|320101138|ref|YP_004176730.1| - 0.057 12.7 0.0 0.094 12.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin FtsK_SpoIIIE PF01580.18 gi|320101138|ref|YP_004176730.1| - 0.059 12.7 0.5 0.093 12.1 0.2 1.4 2 0 0 2 2 1 0 FtsK/SpoIIIE family NACHT PF05729.12 gi|320101138|ref|YP_004176730.1| - 0.066 13.1 0.3 0.17 11.8 0.3 1.6 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 gi|320101138|ref|YP_004176730.1| - 0.079 12.9 0.1 0.28 11.1 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|320101138|ref|YP_004176730.1| - 0.09 13.0 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|320101138|ref|YP_004176730.1| - 0.15 12.3 0.1 0.27 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|320101138|ref|YP_004176730.1| - 0.16 10.7 0.5 0.27 10.0 0.5 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 gi|320101138|ref|YP_004176730.1| - 0.16 11.5 0.1 0.27 10.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|320101138|ref|YP_004176730.1| - 0.27 10.3 0.0 0.39 9.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit QueT PF06177.11 gi|320101139|ref|YP_004176731.1| - 5e-29 101.5 16.6 5.7e-29 101.3 16.6 1.0 1 0 0 1 1 1 1 QueT transporter m04gp34like PF12216.8 gi|320101139|ref|YP_004176731.1| - 0.22 11.1 0.5 0.37 10.3 0.5 1.4 1 0 0 1 1 1 0 Immune evasion protein DUF1465 PF07323.12 gi|320101141|ref|YP_004176733.1| - 0.003 17.4 0.2 0.0056 16.5 0.1 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1465) Trimer_CC PF08954.11 gi|320101141|ref|YP_004176733.1| - 0.11 12.0 2.6 0.35 10.5 2.6 2.0 1 1 0 1 1 1 0 Trimerisation motif CorA PF01544.18 gi|320101141|ref|YP_004176733.1| - 0.13 11.6 1.4 0.21 10.8 1.3 1.5 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein ZapB PF06005.12 gi|320101141|ref|YP_004176733.1| - 0.13 12.7 0.9 0.17 12.3 0.3 1.5 2 0 0 2 2 2 0 Cell division protein ZapB HTH_24 PF13412.6 gi|320101141|ref|YP_004176733.1| - 0.17 11.5 4.9 3.6 7.2 0.0 3.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HSCB_C PF07743.13 gi|320101142|ref|YP_004176734.1| - 0.0014 19.1 2.9 0.0027 18.2 0.3 2.6 1 1 2 3 3 3 1 HSCB C-terminal oligomerisation domain DUF2312 PF10073.9 gi|320101142|ref|YP_004176734.1| - 0.0017 17.9 6.4 0.24 11.0 0.1 2.3 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2312) GreA_GreB_N PF03449.15 gi|320101142|ref|YP_004176734.1| - 0.035 14.3 2.9 0.092 12.9 2.9 1.7 1 0 0 1 1 1 0 Transcription elongation factor, N-terminal DUF3502 PF12010.8 gi|320101142|ref|YP_004176734.1| - 0.045 14.4 0.9 1.7 9.3 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF3502) DUF4112 PF13430.6 gi|320101142|ref|YP_004176734.1| - 0.14 12.4 0.0 4.2 7.7 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4112) PP2C_C PF07830.13 gi|320101142|ref|YP_004176734.1| - 0.29 11.6 2.4 1.6 9.3 1.3 2.3 1 1 1 3 3 3 0 Protein serine/threonine phosphatase 2C, C-terminal domain SIS PF01380.22 gi|320101143|ref|YP_004176735.1| - 8.8e-18 64.4 0.0 1.6e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|320101143|ref|YP_004176735.1| - 8e-14 51.8 2.6 3.1e-09 37.0 0.7 2.2 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|320101143|ref|YP_004176735.1| - 0.0036 17.2 1.5 1.3 8.8 0.1 2.2 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase 2-Hacid_dh_C PF02826.19 gi|320101143|ref|YP_004176735.1| - 0.0062 15.9 0.8 0.33 10.3 0.2 2.2 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|320101143|ref|YP_004176735.1| - 0.067 12.5 0.2 0.3 10.4 0.2 1.9 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Isochorismatase PF00857.20 gi|320101143|ref|YP_004176735.1| - 0.15 12.2 0.0 26 4.9 0.0 2.6 2 1 0 2 2 2 0 Isochorismatase family Radical_SAM PF04055.21 gi|320101144|ref|YP_004176736.1| - 8.8e-13 49.0 0.0 3e-12 47.3 0.0 1.7 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|320101144|ref|YP_004176736.1| - 1.3e-07 31.7 1.0 0.023 14.4 0.0 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) GGDEF_2 PF17853.1 gi|320101144|ref|YP_004176736.1| - 0.014 15.7 0.0 0.32 11.2 0.0 2.6 2 1 0 2 2 2 0 GGDEF-like domain zf-ZPR1 PF03367.13 gi|320101145|ref|YP_004176737.1| - 2.8e-28 98.8 0.0 3.3e-28 98.6 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Rubredoxin_2 PF18073.1 gi|320101145|ref|YP_004176737.1| - 0.021 14.5 2.7 1.9 8.3 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain RNA_POL_M_15KD PF02150.16 gi|320101145|ref|YP_004176737.1| - 0.12 12.2 0.8 1.3 8.9 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Prim_Zn_Ribbon PF08273.12 gi|320101145|ref|YP_004176737.1| - 0.13 12.5 0.2 0.13 12.5 0.2 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Peptidase_M29 PF02073.15 gi|320101146|ref|YP_004176738.1| - 3.6e-105 352.1 0.0 4.1e-105 351.9 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Ferritin PF00210.24 gi|320101147|ref|YP_004176739.1| - 6e-36 123.5 1.2 7.2e-36 123.2 1.2 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|320101147|ref|YP_004176739.1| - 2.4e-07 31.2 0.4 3.2e-07 30.8 0.4 1.2 1 0 0 1 1 1 1 Rubrerythrin CARD PF00619.21 gi|320101147|ref|YP_004176739.1| - 0.0052 16.8 0.0 0.018 15.1 0.0 1.8 1 1 0 1 1 1 1 Caspase recruitment domain Coat_F PF07875.12 gi|320101147|ref|YP_004176739.1| - 0.083 13.1 0.1 3.6 7.9 0.0 2.4 2 0 0 2 2 2 0 Coat F domain CitG PF01874.16 gi|320101148|ref|YP_004176740.1| - 3.8e-58 197.4 0.0 4.7e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Oxidored_molyb PF00174.19 gi|320101149|ref|YP_004176741.1| - 1.1e-36 126.0 0.0 1.5e-36 125.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain OTCace PF00185.24 gi|320101151|ref|YP_004176743.1| - 7.6e-41 139.8 0.0 1.3e-40 139.0 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|320101151|ref|YP_004176743.1| - 5.7e-36 123.8 0.0 1e-35 122.9 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Methyltransf_31 PF13847.6 gi|320101151|ref|YP_004176743.1| - 0.071 12.9 0.0 0.42 10.4 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Limkain-b1 PF11608.8 gi|320101151|ref|YP_004176743.1| - 0.17 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Limkain b1 SBP_bac_5 PF00496.22 gi|320101152|ref|YP_004176744.1| - 3.5e-75 253.3 1.2 4.1e-75 253.1 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|320101153|ref|YP_004176745.1| - 9.5e-31 107.0 15.5 9.5e-31 107.0 15.5 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|320101154|ref|YP_004176746.1| - 5.4e-27 94.7 10.0 5.4e-27 94.7 10.0 1.7 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|320101154|ref|YP_004176746.1| - 0.00032 20.6 0.1 0.00032 20.6 0.1 2.5 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|320101155|ref|YP_004176747.1| - 1.1e-24 87.5 0.0 1.5e-24 87.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|320101155|ref|YP_004176747.1| - 1.2e-15 57.7 0.0 2e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|320101155|ref|YP_004176747.1| - 3.9e-09 36.7 0.2 0.00028 20.8 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|320101155|ref|YP_004176747.1| - 1.8e-05 25.0 0.0 6.4e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|320101155|ref|YP_004176747.1| - 0.001 18.6 0.1 0.011 15.1 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|320101155|ref|YP_004176747.1| - 0.0057 16.4 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AIG1 PF04548.16 gi|320101155|ref|YP_004176747.1| - 0.013 14.9 0.1 0.026 13.8 0.1 1.4 1 0 0 1 1 1 0 AIG1 family AAA_16 PF13191.6 gi|320101155|ref|YP_004176747.1| - 0.022 15.1 0.3 0.085 13.2 0.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|320101155|ref|YP_004176747.1| - 0.025 14.5 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|320101155|ref|YP_004176747.1| - 0.049 13.2 0.0 3.5 7.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|320101155|ref|YP_004176747.1| - 0.051 14.0 0.0 0.085 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|320101155|ref|YP_004176747.1| - 0.077 13.5 0.0 0.12 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|320101155|ref|YP_004176747.1| - 0.11 12.9 0.0 0.35 11.3 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|320101155|ref|YP_004176747.1| - 0.16 10.6 0.0 0.26 9.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain Herpes_UL74 PF07982.12 gi|320101155|ref|YP_004176747.1| - 0.22 10.5 0.0 0.3 10.0 0.0 1.1 1 0 0 1 1 1 0 Herpes UL74 glycoproteins ABC_tran PF00005.27 gi|320101156|ref|YP_004176748.1| - 1.5e-34 119.4 0.0 2e-34 119.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320101156|ref|YP_004176748.1| - 6.8e-09 36.0 3.9 0.00019 21.4 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|320101156|ref|YP_004176748.1| - 0.0008 19.8 0.1 0.00099 19.5 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|320101156|ref|YP_004176748.1| - 0.00097 19.4 0.6 0.0036 17.6 0.6 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|320101156|ref|YP_004176748.1| - 0.0011 18.7 0.1 0.0019 17.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|320101156|ref|YP_004176748.1| - 0.0011 18.5 0.3 0.58 9.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|320101156|ref|YP_004176748.1| - 0.0012 18.8 1.6 0.71 9.9 0.1 3.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|320101156|ref|YP_004176748.1| - 0.0018 17.9 1.2 0.97 9.0 0.1 2.2 2 0 0 2 2 2 2 AAA domain DUF87 PF01935.17 gi|320101156|ref|YP_004176748.1| - 0.0056 16.8 0.1 0.012 15.7 0.1 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain Pox_A32 PF04665.12 gi|320101156|ref|YP_004176748.1| - 0.0059 16.1 0.1 0.011 15.2 0.1 1.4 1 0 0 1 1 1 1 Poxvirus A32 protein Mg_chelatase PF01078.21 gi|320101156|ref|YP_004176748.1| - 0.0065 15.9 0.0 0.026 13.9 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|320101156|ref|YP_004176748.1| - 0.0078 16.1 0.1 0.015 15.2 0.1 1.5 1 0 0 1 1 1 1 NACHT domain MobB PF03205.14 gi|320101156|ref|YP_004176748.1| - 0.018 15.0 0.1 0.032 14.1 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TniB PF05621.11 gi|320101156|ref|YP_004176748.1| - 0.023 14.1 0.6 2.3 7.6 0.1 2.3 2 0 0 2 2 2 0 Bacterial TniB protein RsgA_GTPase PF03193.16 gi|320101156|ref|YP_004176748.1| - 0.031 14.2 0.2 0.068 13.1 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase oligo_HPY PF08352.12 gi|320101156|ref|YP_004176748.1| - 0.033 14.7 0.0 0.058 13.9 0.0 1.4 1 0 0 1 1 1 0 Oligopeptide/dipeptide transporter, C-terminal region T2SSE PF00437.20 gi|320101156|ref|YP_004176748.1| - 0.033 13.2 0.1 0.067 12.2 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|320101156|ref|YP_004176748.1| - 0.049 13.3 0.2 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|320101156|ref|YP_004176748.1| - 0.051 13.3 0.1 0.072 12.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|320101156|ref|YP_004176748.1| - 0.059 13.9 0.1 0.11 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|320101156|ref|YP_004176748.1| - 0.06 13.0 0.1 0.18 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain DUF3987 PF13148.6 gi|320101156|ref|YP_004176748.1| - 0.065 12.2 0.0 0.099 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA PF00004.29 gi|320101156|ref|YP_004176748.1| - 0.068 13.6 0.5 0.9 10.0 0.5 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PIF1 PF05970.14 gi|320101156|ref|YP_004176748.1| - 0.095 11.9 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 PIF1-like helicase ATP-synt_ab PF00006.25 gi|320101156|ref|YP_004176748.1| - 0.17 11.5 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_19 PF13245.6 gi|320101156|ref|YP_004176748.1| - 0.19 12.1 0.3 0.34 11.3 0.3 1.7 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|320101156|ref|YP_004176748.1| - 0.2 11.4 0.3 1.7 8.3 0.3 2.0 1 1 0 1 1 1 0 DEAD/DEAH box helicase PduV-EutP PF10662.9 gi|320101156|ref|YP_004176748.1| - 0.22 11.2 0.3 0.68 9.7 0.1 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|320101156|ref|YP_004176748.1| - 0.25 11.3 1.0 0.41 10.5 0.2 1.7 2 0 0 2 2 2 0 NTPase AAA_13 PF13166.6 gi|320101156|ref|YP_004176748.1| - 0.25 9.9 0.1 4.5 5.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|320101156|ref|YP_004176748.1| - 0.27 10.4 0.1 0.41 9.7 0.1 1.2 1 0 0 1 1 1 0 G-protein alpha subunit tRNA-synt_2d PF01409.20 gi|320101157|ref|YP_004176749.1| - 4.8e-78 262.0 0.0 6.9e-78 261.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|320101157|ref|YP_004176749.1| - 3.3e-06 26.4 1.4 0.0033 16.6 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|320101157|ref|YP_004176749.1| - 1.9e-05 24.2 0.0 0.004 16.6 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain HTH_Crp_2 PF13545.6 gi|320101157|ref|YP_004176749.1| - 0.031 14.2 0.3 0.69 9.9 0.0 2.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Fer4_12 PF13353.6 gi|320101158|ref|YP_004176750.1| - 0.00081 19.7 0.0 0.0016 18.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|320101158|ref|YP_004176750.1| - 0.0013 18.8 0.0 0.0024 18.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|320101158|ref|YP_004176750.1| - 0.0059 17.0 0.0 0.0084 16.5 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily DUF89 PF01937.19 gi|320101159|ref|YP_004176751.1| - 5.5e-36 124.2 0.0 1.1e-35 123.3 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF89 MoCF_biosynth PF00994.24 gi|320101160|ref|YP_004176752.1| - 1e-15 57.7 0.2 1.7e-15 56.9 0.2 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain Peptidase_S24 PF00717.23 gi|320101160|ref|YP_004176752.1| - 0.089 12.8 0.1 0.57 10.2 0.0 2.3 2 0 0 2 2 2 0 Peptidase S24-like HU-CCDC81_bac_1 PF18174.1 gi|320101160|ref|YP_004176752.1| - 0.16 11.9 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 1 SBP_bac_11 PF13531.6 gi|320101161|ref|YP_004176753.1| - 1.3e-29 103.6 0.0 1.6e-29 103.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|320101161|ref|YP_004176753.1| - 0.0033 17.1 0.0 0.0044 16.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Intein_splicing PF14890.6 gi|320101161|ref|YP_004176753.1| - 0.044 13.7 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 Intein splicing domain SBP_bac_6 PF13343.6 gi|320101161|ref|YP_004176753.1| - 0.11 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|320101162|ref|YP_004176754.1| - 4.5e-13 49.3 18.7 4.5e-13 49.3 18.7 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component AtpR PF12966.7 gi|320101162|ref|YP_004176754.1| - 0.4 11.1 0.1 0.4 11.1 0.1 4.0 3 1 1 4 4 4 0 N-ATPase, AtpR subunit ABC_tran PF00005.27 gi|320101163|ref|YP_004176755.1| - 4.1e-27 95.4 0.0 5.8e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320101163|ref|YP_004176755.1| - 2.5e-14 53.8 0.9 3.8e-07 30.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 gi|320101163|ref|YP_004176755.1| - 0.00034 20.8 0.0 0.0015 18.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|320101163|ref|YP_004176755.1| - 0.00065 20.1 0.0 0.00093 19.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|320101163|ref|YP_004176755.1| - 0.0007 18.5 0.0 0.037 12.8 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|320101163|ref|YP_004176755.1| - 0.00088 18.9 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|320101163|ref|YP_004176755.1| - 0.0032 18.0 0.0 0.0051 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|320101163|ref|YP_004176755.1| - 0.0033 17.1 0.0 0.007 16.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|320101163|ref|YP_004176755.1| - 0.0036 17.2 0.0 0.01 15.8 0.0 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|320101163|ref|YP_004176755.1| - 0.0038 16.5 0.0 0.0054 16.0 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_15 PF13175.6 gi|320101163|ref|YP_004176755.1| - 0.0072 16.1 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|320101163|ref|YP_004176755.1| - 0.0087 15.5 0.0 0.036 13.5 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_14 PF13173.6 gi|320101163|ref|YP_004176755.1| - 0.017 15.2 0.0 0.031 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|320101163|ref|YP_004176755.1| - 0.04 14.3 0.0 0.32 11.4 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|320101163|ref|YP_004176755.1| - 0.045 12.8 0.0 0.067 12.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|320101163|ref|YP_004176755.1| - 0.09 13.0 0.0 0.5 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|320101163|ref|YP_004176755.1| - 0.16 10.8 0.0 0.23 10.3 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_30 PF13604.6 gi|320101163|ref|YP_004176755.1| - 0.23 11.2 0.0 0.4 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|320101164|ref|YP_004176756.1| - 9.3e-19 68.4 0.0 1.6e-18 67.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|320101164|ref|YP_004176756.1| - 2.2e-15 56.7 0.0 3.2e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|320101164|ref|YP_004176756.1| - 2.9e-05 24.2 0.1 9.4e-05 22.5 0.1 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|320101164|ref|YP_004176756.1| - 0.00049 20.4 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain MoaC PF01967.21 gi|320101165|ref|YP_004176757.1| - 1.1e-46 158.3 2.1 1.2e-46 158.2 2.1 1.0 1 0 0 1 1 1 1 MoaC family Ribosomal_S9 PF00380.19 gi|320101165|ref|YP_004176757.1| - 0.024 15.2 0.1 0.043 14.3 0.1 1.6 1 1 1 2 2 2 0 Ribosomal protein S9/S16 ThiS PF02597.20 gi|320101166|ref|YP_004176758.1| - 3.7e-09 37.1 0.0 3.9e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|320101166|ref|YP_004176758.1| - 0.00036 20.3 0.0 0.00043 20.1 0.0 1.2 1 0 0 1 1 1 1 Mut7-C ubiquitin TGS PF02824.21 gi|320101166|ref|YP_004176758.1| - 0.00052 20.0 0.2 0.0012 18.9 0.2 1.5 1 0 0 1 1 1 1 TGS domain N_formyltrans_C PF18216.1 gi|320101166|ref|YP_004176758.1| - 0.064 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 N-formyltransferase dimerization C-terminal domain MoaE PF02391.17 gi|320101167|ref|YP_004176759.1| - 1.4e-21 76.9 0.0 1.7e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 MoaE protein DAO PF01266.24 gi|320101168|ref|YP_004176760.1| - 1.3e-51 176.3 0.2 1.4e-51 176.1 0.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|320101168|ref|YP_004176760.1| - 9e-07 28.4 3.3 0.0029 16.9 0.1 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|320101168|ref|YP_004176760.1| - 4.1e-06 26.3 0.7 0.055 12.7 0.1 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|320101168|ref|YP_004176760.1| - 0.00017 21.6 1.2 0.013 15.5 0.1 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|320101168|ref|YP_004176760.1| - 0.00063 18.9 0.3 0.002 17.3 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|320101168|ref|YP_004176760.1| - 0.00071 19.8 0.9 0.0014 18.8 0.2 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|320101168|ref|YP_004176760.1| - 0.0012 17.6 0.3 1.1 7.9 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|320101168|ref|YP_004176760.1| - 0.0036 16.6 0.3 0.028 13.7 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|320101168|ref|YP_004176760.1| - 0.0053 17.3 0.9 0.54 10.9 0.3 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|320101168|ref|YP_004176760.1| - 0.028 13.7 0.0 4.9 6.3 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase TetR_C_34 PF17929.1 gi|320101168|ref|YP_004176760.1| - 0.058 13.5 0.0 0.16 12.1 0.0 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Trp_halogenase PF04820.14 gi|320101168|ref|YP_004176760.1| - 0.21 10.4 0.2 0.32 9.8 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase SO_alpha_A3 PF17806.1 gi|320101169|ref|YP_004176761.1| - 1.5e-12 47.7 0.0 1.7e-12 47.5 0.0 1.0 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Fer2_BFD PF04324.15 gi|320101169|ref|YP_004176761.1| - 1.7e-10 41.1 1.1 2.3e-10 40.7 1.1 1.2 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Fer4 PF00037.27 gi|320101170|ref|YP_004176762.1| - 2.7e-10 39.6 18.1 6.3e-08 32.1 4.1 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|320101170|ref|YP_004176762.1| - 1.1e-08 35.5 6.6 2.3e-08 34.5 6.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|320101170|ref|YP_004176762.1| - 9.5e-08 32.1 8.7 1.6e-07 31.4 8.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|320101170|ref|YP_004176762.1| - 1.2e-06 28.3 15.1 0.00015 21.6 3.1 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|320101170|ref|YP_004176762.1| - 2e-06 27.8 11.7 3.7e-06 26.9 11.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|320101170|ref|YP_004176762.1| - 2e-06 27.5 14.4 4.8e-05 23.2 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|320101170|ref|YP_004176762.1| - 4.9e-06 26.6 10.2 4.5e-05 23.6 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|320101170|ref|YP_004176762.1| - 8.4e-06 25.8 21.1 0.0005 20.1 11.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|320101170|ref|YP_004176762.1| - 0.00011 22.5 5.0 0.0017 18.8 0.1 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|320101170|ref|YP_004176762.1| - 0.00052 20.7 0.2 0.00052 20.7 0.2 2.7 2 2 1 3 3 3 1 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|320101170|ref|YP_004176762.1| - 0.00064 20.6 11.5 0.068 14.1 1.3 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|320101170|ref|YP_004176762.1| - 0.0065 17.0 0.4 0.0065 17.0 0.4 2.6 2 1 1 3 3 3 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|320101170|ref|YP_004176762.1| - 0.019 15.9 15.3 0.9 10.6 5.7 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|320101170|ref|YP_004176762.1| - 0.058 14.0 11.8 0.087 13.4 2.8 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain RPEL PF02755.15 gi|320101170|ref|YP_004176762.1| - 0.084 12.6 0.3 0.14 11.9 0.3 1.4 1 0 0 1 1 1 0 RPEL repeat Fer4_22 PF17179.4 gi|320101170|ref|YP_004176762.1| - 0.12 13.3 1.4 0.12 13.3 1.4 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Pyr_redox_2 PF07992.14 gi|320101171|ref|YP_004176763.1| - 1.3e-31 109.9 4.8 2e-31 109.3 4.8 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|320101171|ref|YP_004176763.1| - 6.3e-22 77.4 0.0 1.4e-21 76.3 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_3 PF13738.6 gi|320101171|ref|YP_004176763.1| - 9.1e-14 51.4 0.1 7.8e-08 31.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|320101171|ref|YP_004176763.1| - 5.4e-11 42.3 4.2 2e-07 30.6 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|320101171|ref|YP_004176763.1| - 2.5e-09 37.2 4.0 8.7e-05 22.7 0.3 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|320101171|ref|YP_004176763.1| - 2.9e-09 36.5 7.5 5e-07 29.1 1.2 2.7 2 1 1 3 3 3 2 FAD binding domain Thi4 PF01946.17 gi|320101171|ref|YP_004176763.1| - 7.8e-09 35.1 1.0 2.7e-06 26.8 0.1 2.3 2 0 0 2 2 2 2 Thi4 family GIDA PF01134.22 gi|320101171|ref|YP_004176763.1| - 2.1e-08 33.6 6.2 2.9e-05 23.3 0.1 3.5 4 0 0 4 4 4 3 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|320101171|ref|YP_004176763.1| - 6.5e-08 33.0 9.7 2.7e-05 24.7 1.9 2.8 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|320101171|ref|YP_004176763.1| - 9.1e-08 31.9 5.3 1e-07 31.7 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|320101171|ref|YP_004176763.1| - 1.8e-07 31.1 7.9 0.0025 17.4 0.1 3.3 2 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|320101171|ref|YP_004176763.1| - 4.6e-06 25.6 2.8 0.00031 19.6 0.2 2.4 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_7 PF13241.6 gi|320101171|ref|YP_004176763.1| - 9.6e-06 26.0 1.7 0.098 13.1 0.2 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding ApbA PF02558.16 gi|320101171|ref|YP_004176763.1| - 1.9e-05 24.3 2.6 0.0044 16.7 0.1 2.4 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|320101171|ref|YP_004176763.1| - 0.00066 18.8 4.1 0.0051 15.9 0.7 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|320101171|ref|YP_004176763.1| - 0.00081 18.8 1.6 0.18 11.0 0.1 2.7 2 1 0 3 3 3 2 Flavin containing amine oxidoreductase Shikimate_DH PF01488.20 gi|320101171|ref|YP_004176763.1| - 0.014 15.5 1.3 0.77 9.8 0.1 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.21 gi|320101171|ref|YP_004176763.1| - 0.049 13.4 1.0 7.8 6.1 0.1 2.2 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ThiF PF00899.21 gi|320101171|ref|YP_004176763.1| - 0.065 12.6 2.1 3.1 7.1 0.1 2.4 2 0 0 2 2 2 0 ThiF family F420_oxidored PF03807.17 gi|320101171|ref|YP_004176763.1| - 0.072 13.7 1.0 1.3 9.7 0.1 2.9 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|320101171|ref|YP_004176763.1| - 0.31 10.6 2.6 9 5.8 0.1 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|320101171|ref|YP_004176763.1| - 0.65 9.9 7.7 1.1 9.1 0.2 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|320101171|ref|YP_004176763.1| - 0.84 9.9 3.2 27 5.1 0.5 2.7 2 1 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|320101171|ref|YP_004176763.1| - 2.2 8.3 5.7 5.7 6.9 0.1 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding ATPase PF06745.13 gi|320101172|ref|YP_004176764.1| - 5e-22 78.4 0.0 6.4e-22 78.0 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|320101172|ref|YP_004176764.1| - 3.9e-09 36.4 0.0 6.6e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|320101172|ref|YP_004176764.1| - 9.6e-08 31.7 0.0 1.5e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain CbiA PF01656.23 gi|320101172|ref|YP_004176764.1| - 2.5e-06 27.6 0.0 3.6e-06 27.1 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 gi|320101172|ref|YP_004176764.1| - 0.0001 22.3 0.1 0.18 11.7 0.0 3.0 2 1 1 3 3 3 1 NACHT domain Elong_Iki1 PF10483.9 gi|320101172|ref|YP_004176764.1| - 0.00017 21.2 0.0 0.00026 20.6 0.0 1.4 1 1 0 1 1 1 1 Elongator subunit Iki1 AAA_16 PF13191.6 gi|320101172|ref|YP_004176764.1| - 0.00018 22.0 0.0 0.00035 21.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain Fer4_NifH PF00142.18 gi|320101172|ref|YP_004176764.1| - 0.00061 19.3 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|320101172|ref|YP_004176764.1| - 0.0011 18.6 0.0 0.005 16.5 0.0 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|320101172|ref|YP_004176764.1| - 0.0012 18.2 0.0 0.0021 17.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.17 gi|320101172|ref|YP_004176764.1| - 0.0012 18.6 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein ParA PF10609.9 gi|320101172|ref|YP_004176764.1| - 0.0013 18.2 0.1 0.0021 17.6 0.1 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|320101172|ref|YP_004176764.1| - 0.0046 16.2 0.0 0.0071 15.6 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|320101172|ref|YP_004176764.1| - 0.0084 16.0 0.1 0.051 13.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.10 gi|320101172|ref|YP_004176764.1| - 0.0092 15.5 0.0 0.025 14.0 0.0 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_5 PF07728.14 gi|320101172|ref|YP_004176764.1| - 0.011 15.8 0.0 0.026 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|320101172|ref|YP_004176764.1| - 0.014 15.4 0.0 0.038 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|320101172|ref|YP_004176764.1| - 0.015 15.2 0.0 0.053 13.4 0.0 1.8 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea PAXNEB PF05625.11 gi|320101172|ref|YP_004176764.1| - 0.022 13.9 0.0 0.047 12.8 0.0 1.5 2 0 0 2 2 2 0 PAXNEB protein MipZ PF09140.11 gi|320101172|ref|YP_004176764.1| - 0.032 13.5 0.0 0.048 13.0 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ MeaB PF03308.16 gi|320101172|ref|YP_004176764.1| - 0.042 12.8 0.0 0.28 10.1 0.0 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF815 PF05673.13 gi|320101172|ref|YP_004176764.1| - 0.042 13.0 0.0 0.066 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) APS_kinase PF01583.20 gi|320101172|ref|YP_004176764.1| - 0.063 13.2 0.0 0.18 11.7 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase NTPase_1 PF03266.15 gi|320101172|ref|YP_004176764.1| - 0.076 12.9 0.4 0.32 10.9 0.4 2.3 1 1 0 1 1 1 0 NTPase ABC_tran PF00005.27 gi|320101172|ref|YP_004176764.1| - 0.092 13.3 0.0 0.14 12.7 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|320101172|ref|YP_004176764.1| - 0.093 12.4 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF4192 PF13830.6 gi|320101172|ref|YP_004176764.1| - 0.097 12.7 0.1 0.32 11.0 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4192) NB-ARC PF00931.22 gi|320101172|ref|YP_004176764.1| - 0.099 11.8 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ELP6 PF09807.9 gi|320101172|ref|YP_004176764.1| - 0.12 11.8 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Elongation complex protein 6 CLP1_P PF16575.5 gi|320101172|ref|YP_004176764.1| - 0.12 12.1 0.0 0.34 10.7 0.0 1.7 2 0 0 2 2 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_22 PF13401.6 gi|320101172|ref|YP_004176764.1| - 0.14 12.5 0.0 0.28 11.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF835 PF05763.12 gi|320101172|ref|YP_004176764.1| - 0.14 11.9 0.2 2 8.1 0.0 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF835) AAA_18 PF13238.6 gi|320101172|ref|YP_004176764.1| - 0.15 12.6 0.0 0.32 11.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|320101172|ref|YP_004176764.1| - 0.17 11.7 0.1 0.4 10.5 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|320101172|ref|YP_004176764.1| - 0.19 11.5 0.0 2.5 7.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|320101172|ref|YP_004176764.1| - 0.2 11.4 0.1 0.72 9.6 0.1 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CoA_transf_3 PF02515.17 gi|320101174|ref|YP_004176766.1| - 2.5e-120 402.0 0.0 2.9e-120 401.8 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III G_glu_transpept PF01019.21 gi|320101175|ref|YP_004176767.1| - 2.4e-78 264.2 0.0 6e-78 262.9 0.0 1.6 1 1 0 1 1 1 1 Gamma-glutamyltranspeptidase TOBE_2 PF08402.10 gi|320101175|ref|YP_004176767.1| - 0.025 14.7 0.3 0.13 12.4 0.1 2.2 2 0 0 2 2 2 0 TOBE domain GHMP_kinases_C PF08544.13 gi|320101176|ref|YP_004176768.1| - 1e-05 25.8 0.0 2.4e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|320101176|ref|YP_004176768.1| - 0.0026 17.9 1.1 0.0038 17.4 0.1 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain DUF447 PF04289.12 gi|320101177|ref|YP_004176769.1| - 7.1e-21 74.8 0.0 8.2e-21 74.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Pyridox_ox_2 PF12900.7 gi|320101177|ref|YP_004176769.1| - 0.00043 20.3 0.0 0.00086 19.3 0.0 1.6 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF2054 PF10218.9 gi|320101177|ref|YP_004176769.1| - 0.048 13.7 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2054) DUF1464 PF07318.12 gi|320101178|ref|YP_004176770.1| - 9.9e-85 284.6 1.0 1.1e-84 284.4 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) MatE PF01554.18 gi|320101179|ref|YP_004176771.1| - 1.4e-40 138.6 31.0 1.3e-23 83.4 9.4 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|320101179|ref|YP_004176771.1| - 2.2e-11 44.0 43.0 3e-10 40.3 15.3 4.3 2 1 0 3 3 3 3 Polysaccharide biosynthesis C-terminal domain TOM6p PF15184.6 gi|320101179|ref|YP_004176771.1| - 0.061 13.1 0.1 0.2 11.4 0.1 1.9 1 0 0 1 1 1 0 Mitochondrial import receptor subunit TOM6 homolog Cas_Cas1 PF01867.16 gi|320101181|ref|YP_004176773.1| - 7.4e-60 202.5 0.0 9.1e-60 202.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Csa1 PF06023.12 gi|320101182|ref|YP_004176774.1| - 1.9e-68 231.0 0.0 2.6e-68 230.5 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 Dna2 PF08696.11 gi|320101182|ref|YP_004176774.1| - 0.1 12.4 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 DNA replication factor Dna2 CRISPR_Cas2 PF09827.9 gi|320101183|ref|YP_004176775.1| - 3.6e-19 68.7 0.0 4.1e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas4 PF01930.17 gi|320101184|ref|YP_004176776.1| - 2.4e-15 57.0 0.0 2.9e-15 56.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|320101184|ref|YP_004176776.1| - 6.1e-10 39.4 0.7 3.8e-07 30.3 0.0 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily DUF1707 PF08044.11 gi|320101184|ref|YP_004176776.1| - 0.041 13.9 0.2 0.085 12.9 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) DevR PF01905.16 gi|320101186|ref|YP_004176778.1| - 4.3e-68 229.3 0.7 5.4e-68 229.0 0.7 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Csx9 PF09658.10 gi|320101188|ref|YP_004176780.1| - 0.0017 17.7 0.0 0.0024 17.1 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csx9) Helicase_C PF00271.31 gi|320101189|ref|YP_004176781.1| - 2e-09 37.8 0.1 5.9e-09 36.2 0.1 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|320101189|ref|YP_004176781.1| - 2.2e-06 27.6 0.1 1.8e-05 24.6 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|320101189|ref|YP_004176781.1| - 5.3e-05 23.3 0.0 0.00013 22.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HD_6 PF18019.1 gi|320101190|ref|YP_004176782.1| - 0.0011 19.1 0.0 0.0017 18.5 0.0 1.3 1 1 0 1 1 1 1 HD domain HD PF01966.22 gi|320101190|ref|YP_004176782.1| - 0.0024 18.1 0.2 0.022 15.0 0.0 2.2 2 0 0 2 2 2 1 HD domain TrmB PF01978.19 gi|320101191|ref|YP_004176783.1| - 4.5e-06 26.5 0.3 1.2e-05 25.1 0.3 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|320101191|ref|YP_004176783.1| - 1e-05 25.9 0.2 4.1e-05 24.0 0.0 2.1 2 1 1 3 3 3 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|320101191|ref|YP_004176783.1| - 1.3e-05 24.6 0.2 3e-05 23.5 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|320101191|ref|YP_004176783.1| - 2.4e-05 24.0 1.9 4.8e-05 23.1 0.0 2.5 3 1 0 3 3 3 1 IclR helix-turn-helix domain MarR PF01047.22 gi|320101191|ref|YP_004176783.1| - 0.00019 21.3 0.0 0.00041 20.2 0.0 1.6 1 0 0 1 1 1 1 MarR family Cas_Cas02710 PF09670.10 gi|320101191|ref|YP_004176783.1| - 0.00028 19.8 0.0 0.00038 19.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) MarR_2 PF12802.7 gi|320101191|ref|YP_004176783.1| - 0.00084 19.2 0.1 0.0015 18.4 0.1 1.4 1 0 0 1 1 1 1 MarR family SMC_ScpB PF04079.16 gi|320101191|ref|YP_004176783.1| - 0.0017 18.0 0.1 0.0099 15.5 0.0 2.1 2 1 0 2 2 2 1 Segregation and condensation complex subunit ScpB PaaX PF07848.12 gi|320101191|ref|YP_004176783.1| - 0.0017 18.6 0.2 0.0082 16.3 0.1 2.1 2 0 0 2 2 2 1 PaaX-like protein HTH_20 PF12840.7 gi|320101191|ref|YP_004176783.1| - 0.002 18.1 0.1 0.0065 16.5 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Cas_DxTHG PF09455.10 gi|320101191|ref|YP_004176783.1| - 0.0037 16.9 0.1 0.0046 16.6 0.1 1.3 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family DUF1495 PF07381.11 gi|320101191|ref|YP_004176783.1| - 0.0056 16.5 0.0 0.078 12.8 0.0 2.5 3 0 0 3 3 3 1 Winged helix DNA-binding domain (DUF1495) RuvB_C PF05491.13 gi|320101191|ref|YP_004176783.1| - 0.0091 15.8 0.0 0.025 14.4 0.0 1.7 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain PadR PF03551.14 gi|320101191|ref|YP_004176783.1| - 0.0098 15.8 0.1 0.048 13.6 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|320101191|ref|YP_004176783.1| - 0.012 15.9 0.0 0.023 15.1 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor Cas_NE0113 PF09623.10 gi|320101191|ref|YP_004176783.1| - 0.029 14.1 0.1 0.24 11.0 0.0 2.1 1 1 1 2 2 2 0 CRISPR-associated protein NE0113 (Cas_NE0113) DUF1887 PF09002.11 gi|320101191|ref|YP_004176783.1| - 0.033 12.9 0.0 0.039 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) Rrf2 PF02082.20 gi|320101191|ref|YP_004176783.1| - 0.05 14.0 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DUF4364 PF14277.6 gi|320101191|ref|YP_004176783.1| - 0.08 12.7 0.0 0.87 9.3 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4364) Replic_Relax PF13814.6 gi|320101191|ref|YP_004176783.1| - 0.12 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation CRISPR_Cas6 PF10040.9 gi|320101192|ref|YP_004176784.1| - 1.2e-08 35.4 0.0 2.8e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Cas6_N PF17952.1 gi|320101192|ref|YP_004176784.1| - 0.00023 21.4 0.1 0.00037 20.8 0.1 1.3 1 0 0 1 1 1 1 Cas6 N-terminal domain CRISPR_Cas6 PF10040.9 gi|320101193|ref|YP_004176785.1| - 2.3e-08 34.5 0.1 5.5e-08 33.4 0.1 1.5 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Proton_antipo_M PF00361.20 gi|320101194|ref|YP_004176786.1| - 5e-29 101.4 23.0 5e-29 101.4 23.0 2.1 2 1 1 3 3 3 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|320101194|ref|YP_004176786.1| - 1.1e-05 24.9 7.6 1.1e-05 24.9 7.6 2.6 3 1 0 3 3 3 1 NADH dehydrogenase I, subunit N related protein Complex1_30kDa PF00329.19 gi|320101195|ref|YP_004176787.1| - 2.4e-26 92.8 0.0 4.7e-26 91.8 0.0 1.5 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|320101195|ref|YP_004176787.1| - 4.7e-09 36.2 0.0 8.4e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF35_N PF12172.8 gi|320101195|ref|YP_004176787.1| - 0.021 14.7 0.4 0.15 11.9 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DDE_Tnp_IS66 PF03050.14 gi|320101195|ref|YP_004176787.1| - 0.031 13.7 0.1 0.073 12.5 0.1 1.5 1 1 0 1 1 1 0 Transposase IS66 family Complex1_49kDa PF00346.19 gi|320101196|ref|YP_004176788.1| - 4.4e-68 229.3 0.0 2.3e-52 177.8 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|320101196|ref|YP_004176788.1| - 0.0032 16.4 0.0 0.0059 15.6 0.0 1.4 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Fer4 PF00037.27 gi|320101197|ref|YP_004176789.1| - 8e-17 60.3 7.6 9.9e-10 37.8 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|320101197|ref|YP_004176789.1| - 9.4e-14 51.7 21.8 5.1e-11 43.0 10.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|320101197|ref|YP_004176789.1| - 1.1e-13 51.0 16.7 1.1e-09 38.3 10.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|320101197|ref|YP_004176789.1| - 4.8e-10 40.2 3.8 0.0004 21.3 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|320101197|ref|YP_004176789.1| - 5.5e-10 39.3 7.6 7.9e-10 38.8 7.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|320101197|ref|YP_004176789.1| - 8e-10 38.7 21.9 2.7e-07 30.6 10.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|320101197|ref|YP_004176789.1| - 2.5e-09 36.8 9.9 2.7e-05 24.0 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|320101197|ref|YP_004176789.1| - 1.8e-08 34.0 10.4 6.9e-05 22.7 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|320101197|ref|YP_004176789.1| - 8.5e-06 26.4 17.5 0.0011 19.7 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|320101197|ref|YP_004176789.1| - 1e-05 26.1 5.0 0.021 15.5 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|320101197|ref|YP_004176789.1| - 1.9e-05 25.0 12.9 0.0008 19.8 13.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|320101197|ref|YP_004176789.1| - 1.9e-05 25.1 11.5 0.00038 20.9 11.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|320101197|ref|YP_004176789.1| - 0.00014 22.1 9.5 0.024 15.1 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|320101197|ref|YP_004176789.1| - 0.00023 21.6 6.9 0.072 13.6 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|320101197|ref|YP_004176789.1| - 0.00045 21.0 3.3 0.095 13.6 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|320101197|ref|YP_004176789.1| - 0.00076 19.7 4.3 0.17 12.1 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain MrpF_PhaF PF04066.13 gi|320101198|ref|YP_004176790.1| - 5.5e-08 33.1 8.8 5.5e-08 33.1 8.8 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MASE5 PF17178.4 gi|320101198|ref|YP_004176790.1| - 0.2 11.4 9.4 0.37 10.6 9.4 1.4 1 1 0 1 1 1 0 Membrane-associated sensor PhaG_MnhG_YufB PF03334.14 gi|320101199|ref|YP_004176791.1| - 1.2e-16 60.6 7.5 1.6e-16 60.3 7.5 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.6 gi|320101200|ref|YP_004176792.1| - 7e-12 45.3 4.2 7e-12 45.3 4.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Pex24p PF06398.11 gi|320101200|ref|YP_004176792.1| - 0.48 9.4 1.0 0.47 9.4 1.0 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin MnhB PF04039.13 gi|320101201|ref|YP_004176793.1| - 9.5e-17 61.5 12.2 9.5e-17 61.5 12.2 2.2 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|320101201|ref|YP_004176793.1| - 0.001 18.6 0.2 0.001 18.6 0.2 1.9 3 0 0 3 3 3 1 Predicted membrane protein (DUF2106) Oxidored_q2 PF00420.24 gi|320101202|ref|YP_004176794.1| - 6.7e-19 67.5 2.2 8.3e-19 67.2 2.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MNHE PF01899.16 gi|320101203|ref|YP_004176795.1| - 9.7e-35 119.5 0.9 1.1e-34 119.2 0.9 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit NADHdh PF00146.21 gi|320101205|ref|YP_004176797.1| - 3.3e-59 200.6 18.6 4.1e-59 200.3 18.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DS PF01916.17 gi|320101206|ref|YP_004176798.1| - 5.1e-89 298.3 0.0 5.8e-89 298.2 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Na_sulph_symp PF00939.19 gi|320101207|ref|YP_004176799.1| - 1.1e-71 242.3 38.4 1.4e-71 242.0 38.4 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|320101207|ref|YP_004176799.1| - 1.2e-32 113.3 43.8 1.2e-32 113.3 43.8 2.2 1 1 2 3 3 3 1 Citrate transporter BatA PF07584.11 gi|320101207|ref|YP_004176799.1| - 0.061 13.7 6.6 0.096 13.1 3.7 2.9 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal GTA_holin_3TM PF11351.8 gi|320101207|ref|YP_004176799.1| - 4.4 7.9 6.0 0.84 10.2 0.1 2.6 2 0 0 2 2 2 0 Holin of 3TMs, for gene-transfer release PhoU PF01895.19 gi|320101208|ref|YP_004176800.1| - 1e-25 90.0 15.1 1.2e-18 67.4 8.2 2.3 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|320101208|ref|YP_004176800.1| - 3e-09 36.6 0.0 5.9e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin KORA PF16509.5 gi|320101208|ref|YP_004176800.1| - 0.024 14.9 0.0 0.067 13.5 0.0 1.7 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor DUF3096 PF11295.8 gi|320101209|ref|YP_004176801.1| - 1.1e-06 28.2 13.1 5.6e-06 25.9 12.6 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF3096) DUF308 PF03729.13 gi|320101209|ref|YP_004176801.1| - 0.014 15.7 7.0 0.039 14.3 7.0 1.7 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) IBV_3A PF03617.13 gi|320101209|ref|YP_004176801.1| - 0.075 13.0 1.2 0.11 12.5 1.2 1.2 1 0 0 1 1 1 0 IBV 3A protein SLATT_6 PF18169.1 gi|320101209|ref|YP_004176801.1| - 0.08 12.5 1.1 0.086 12.4 1.1 1.2 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 LisH PF08513.11 gi|320101209|ref|YP_004176801.1| - 0.096 12.7 0.3 0.19 11.7 0.3 1.5 1 0 0 1 1 1 0 LisH Cytochrom_B558a PF05038.13 gi|320101209|ref|YP_004176801.1| - 0.16 11.5 0.1 0.19 11.3 0.1 1.1 1 0 0 1 1 1 0 Cytochrome Cytochrome b558 alpha-subunit DUF2892 PF11127.8 gi|320101209|ref|YP_004176801.1| - 0.53 10.4 4.3 0.77 9.8 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) PmbA_TldD PF01523.16 gi|320101210|ref|YP_004176802.1| - 7.8e-43 147.3 0.0 1e-42 146.9 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|320101211|ref|YP_004176803.1| - 2.8e-47 161.9 0.0 8.1e-47 160.4 0.0 1.6 2 0 0 2 2 2 1 Putative modulator of DNA gyrase Endonuclease_5 PF04493.14 gi|320101212|ref|YP_004176804.1| - 5.4e-50 169.8 0.0 6.4e-50 169.6 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V UvrC_HhH_N PF08459.11 gi|320101212|ref|YP_004176804.1| - 0.093 12.6 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal DUF2204 PF09970.9 gi|320101213|ref|YP_004176805.1| - 6.2e-59 198.7 0.1 7e-59 198.5 0.1 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) Ribosomal_L40e PF01020.17 gi|320101214|ref|YP_004176806.1| - 5.2e-08 32.7 3.4 5.8e-08 32.5 3.4 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|320101214|ref|YP_004176806.1| - 0.00059 19.5 3.1 0.00081 19.0 3.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|320101214|ref|YP_004176806.1| - 0.0017 18.3 0.8 0.002 18.1 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon CpXC PF14353.6 gi|320101214|ref|YP_004176806.1| - 0.0018 18.3 0.7 0.022 14.8 0.0 2.0 1 1 1 2 2 2 1 CpXC protein zf-RanBP PF00641.18 gi|320101214|ref|YP_004176806.1| - 0.0034 16.6 3.5 0.014 14.7 3.3 2.0 1 1 1 2 2 2 2 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.6 gi|320101214|ref|YP_004176806.1| - 0.01 15.2 3.0 0.014 14.8 3.0 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Rpr2 PF04032.16 gi|320101214|ref|YP_004176806.1| - 0.023 15.0 1.1 0.028 14.7 1.1 1.1 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Rubredoxin_2 PF18073.1 gi|320101214|ref|YP_004176806.1| - 0.042 13.6 1.3 0.094 12.5 1.3 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain HypA PF01155.19 gi|320101214|ref|YP_004176806.1| - 0.071 13.1 0.4 0.085 12.9 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-CCHC_2 PF13696.6 gi|320101214|ref|YP_004176806.1| - 0.56 10.1 9.3 2.8 7.8 2.2 2.2 2 0 0 2 2 2 0 Zinc knuckle DUF2688 PF10892.8 gi|320101214|ref|YP_004176806.1| - 6.5 6.3 10.5 8.6 5.9 2.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2688) LPG_synthase_TM PF03706.13 gi|320101215|ref|YP_004176807.1| - 1.5e-17 64.1 30.5 1.9e-17 63.7 30.1 1.4 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region eRF1_2 PF03464.15 gi|320101216|ref|YP_004176808.1| - 1.1e-41 142.2 0.0 1.8e-41 141.6 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|320101216|ref|YP_004176808.1| - 3e-20 72.8 0.2 1e-18 67.9 0.0 2.9 2 1 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|320101216|ref|YP_004176808.1| - 6.5e-19 68.5 0.0 1.2e-17 64.5 0.0 2.5 2 1 1 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|320101216|ref|YP_004176808.1| - 3.9e-12 46.6 0.1 1.3e-11 45.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|320101216|ref|YP_004176808.1| - 0.00023 21.2 0.0 0.00037 20.5 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 DUF86 PF01934.17 gi|320101216|ref|YP_004176808.1| - 0.037 13.9 0.0 0.18 11.7 0.0 2.1 3 0 0 3 3 3 0 Protein of unknown function DUF86 DUF496 PF04363.12 gi|320101216|ref|YP_004176808.1| - 0.094 12.8 0.3 0.31 11.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF496) DUF5321 PF17254.2 gi|320101216|ref|YP_004176808.1| - 0.11 12.0 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5321) SpoU_sub_bind PF08032.12 gi|320101216|ref|YP_004176808.1| - 0.39 11.0 3.4 0.46 10.8 0.0 2.8 4 0 0 4 4 4 0 RNA 2'-O ribose methyltransferase substrate binding GerD PF17898.1 gi|320101217|ref|YP_004176809.1| - 0.068 13.1 0.0 0.071 13.1 0.0 1.1 1 0 0 1 1 1 0 Spore germination GerD central core domain GATase_4 PF13230.6 gi|320101218|ref|YP_004176810.1| - 2.1e-08 33.4 0.0 2.9e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|320101218|ref|YP_004176810.1| - 0.00013 22.2 0.0 0.0002 21.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain NAD_kinase PF01513.21 gi|320101219|ref|YP_004176811.1| - 2.6e-53 181.1 0.2 3e-53 180.9 0.2 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|320101219|ref|YP_004176811.1| - 0.00081 19.0 0.4 0.002 17.8 0.1 1.9 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PFK PF00365.20 gi|320101219|ref|YP_004176811.1| - 0.014 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Phosphofructokinase DeoRC PF00455.22 gi|320101219|ref|YP_004176811.1| - 0.034 14.1 0.0 0.14 12.1 0.0 2.0 2 0 0 2 2 2 0 DeoR C terminal sensor domain Metallophos PF00149.28 gi|320101220|ref|YP_004176812.1| - 4.8e-21 76.2 0.0 6.6e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF4834 PF16118.5 gi|320101221|ref|YP_004176813.1| - 0.084 13.9 0.7 0.14 13.2 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) DZR PF12773.7 gi|320101222|ref|YP_004176814.1| - 0.032 14.3 0.4 0.054 13.5 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|320101222|ref|YP_004176814.1| - 0.17 11.6 2.0 1.8 8.3 0.3 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|320101222|ref|YP_004176814.1| - 0.41 10.4 3.3 0.85 9.4 3.3 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|320101222|ref|YP_004176814.1| - 0.41 10.1 4.4 2 7.9 4.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|320101222|ref|YP_004176814.1| - 0.7 9.8 2.5 1.1 9.2 2.5 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2339 PF10101.9 gi|320101224|ref|YP_004176816.1| - 0.007 15.0 0.0 0.0071 15.0 0.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2339) SKG6 PF08693.10 gi|320101224|ref|YP_004176816.1| - 0.035 13.5 5.0 0.035 13.5 5.0 2.0 2 0 0 2 2 2 0 Transmembrane alpha-helix domain DUF2771 PF10969.8 gi|320101224|ref|YP_004176816.1| - 0.82 9.7 4.9 1.4 8.9 4.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2771) Cpn60_TCP1 PF00118.24 gi|320101225|ref|YP_004176817.1| - 3.6e-181 603.1 14.8 4.1e-181 602.9 14.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family RNA_pol_Rpb6 PF01192.22 gi|320101226|ref|YP_004176818.1| - 2e-11 43.6 0.0 2.8e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Peptidase_M50 PF02163.22 gi|320101227|ref|YP_004176819.1| - 6.3e-11 42.0 10.1 1.7e-07 30.8 10.1 2.7 1 1 0 1 1 1 1 Peptidase family M50 PRA1 PF03208.19 gi|320101227|ref|YP_004176819.1| - 0.64 9.6 7.8 0.097 12.3 1.3 2.6 2 1 1 3 3 3 0 PRA1 family protein Topoisom_bac PF01131.20 gi|320101228|ref|YP_004176820.1| - 2e-109 366.4 0.0 2.4e-109 366.1 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|320101228|ref|YP_004176820.1| - 1.6e-14 53.9 0.0 4.3e-14 52.6 0.0 1.8 1 0 0 1 1 1 1 Toprim domain Peptidase_S24 PF00717.23 gi|320101229|ref|YP_004176821.1| - 6e-10 38.9 0.5 9.7e-10 38.3 0.5 1.4 1 0 0 1 1 1 1 Peptidase S24-like E1-E2_ATPase PF00122.20 gi|320101229|ref|YP_004176821.1| - 0.51 9.8 2.3 0.76 9.3 0.1 2.0 1 1 1 2 2 2 0 E1-E2 ATPase TFIIS_C PF01096.18 gi|320101230|ref|YP_004176822.1| - 0.00061 19.6 2.4 0.14 12.0 0.3 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.6 gi|320101230|ref|YP_004176822.1| - 0.0019 18.1 4.7 0.2 11.6 0.2 2.6 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|320101230|ref|YP_004176822.1| - 0.0029 17.7 0.8 0.93 9.7 0.1 2.3 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.19 gi|320101230|ref|YP_004176822.1| - 0.0029 17.6 0.2 1.5 8.8 0.1 2.2 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 gi|320101230|ref|YP_004176822.1| - 0.0037 17.6 0.5 0.0075 16.6 0.5 1.5 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.13 gi|320101230|ref|YP_004176822.1| - 0.0047 16.6 4.3 0.062 13.0 0.5 2.3 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|320101230|ref|YP_004176822.1| - 0.011 15.1 1.9 0.27 10.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|320101230|ref|YP_004176822.1| - 0.019 14.8 4.7 1.1 9.2 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|320101230|ref|YP_004176822.1| - 0.024 14.1 0.9 0.37 10.3 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding GcpE PF04551.14 gi|320101230|ref|YP_004176822.1| - 0.025 13.7 0.6 0.029 13.5 0.6 1.1 1 0 0 1 1 1 0 GcpE protein Zn_Tnp_IS1595 PF12760.7 gi|320101230|ref|YP_004176822.1| - 0.038 14.0 3.3 0.12 12.3 3.0 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Elf1 PF05129.13 gi|320101230|ref|YP_004176822.1| - 0.046 13.8 0.1 0.1 12.7 0.1 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1 PF03811.13 gi|320101230|ref|YP_004176822.1| - 0.048 13.4 0.7 0.048 13.4 0.7 2.2 2 0 0 2 2 2 0 InsA N-terminal domain PhnA_Zn_Ribbon PF08274.12 gi|320101230|ref|YP_004176822.1| - 0.056 13.4 0.4 3 7.9 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF4379 PF14311.6 gi|320101230|ref|YP_004176822.1| - 0.08 13.3 1.6 0.57 10.6 0.1 2.2 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|320101230|ref|YP_004176822.1| - 0.08 12.7 0.7 16 5.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|320101230|ref|YP_004176822.1| - 0.083 13.0 3.6 1.4 9.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 gi|320101230|ref|YP_004176822.1| - 0.086 12.5 4.5 3 7.6 0.0 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|320101230|ref|YP_004176822.1| - 0.12 12.2 2.5 2.3 8.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|320101230|ref|YP_004176822.1| - 0.12 11.8 0.1 0.12 11.8 0.1 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com CpXC PF14353.6 gi|320101230|ref|YP_004176822.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 CpXC protein Zn_ribbon_recom PF13408.6 gi|320101230|ref|YP_004176822.1| - 0.17 12.4 2.3 3.8 8.1 0.7 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain OrfB_Zn_ribbon PF07282.11 gi|320101230|ref|YP_004176822.1| - 0.18 11.7 0.7 9.2 6.3 0.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-Dof PF02701.15 gi|320101230|ref|YP_004176822.1| - 0.52 10.5 3.3 3.2 8.0 0.2 2.2 2 0 0 2 2 2 0 Dof domain, zinc finger zf-tcix PF14952.6 gi|320101230|ref|YP_004176822.1| - 1.1 8.9 4.7 11 5.8 0.4 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ACC PF17848.1 gi|320101230|ref|YP_004176822.1| - 1.1 9.3 3.8 2.5 8.3 0.5 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-FPG_IleRS PF06827.14 gi|320101230|ref|YP_004176822.1| - 3.3 7.7 9.2 1.1 9.2 0.3 3.2 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Rubredoxin_2 PF18073.1 gi|320101230|ref|YP_004176822.1| - 5.2 6.9 7.7 16 5.3 0.8 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Enolase_C PF00113.22 gi|320101232|ref|YP_004176824.1| - 1.1e-114 382.7 0.0 1.4e-114 382.4 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|320101232|ref|YP_004176824.1| - 3.8e-51 172.7 0.1 7.7e-51 171.7 0.1 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|320101232|ref|YP_004176824.1| - 7.2e-10 38.8 0.0 1.1e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|320101232|ref|YP_004176824.1| - 8.5e-05 21.8 0.0 0.00015 21.0 0.0 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus DUF1198 PF06711.11 gi|320101233|ref|YP_004176825.1| - 0.17 11.9 1.9 0.18 11.8 1.4 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1198) DUF443 PF04276.12 gi|320101233|ref|YP_004176825.1| - 0.18 11.6 5.6 0.21 11.4 5.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF443) CrgA PF06781.12 gi|320101233|ref|YP_004176825.1| - 0.66 10.1 5.3 3.2 7.9 1.4 2.1 2 0 0 2 2 2 0 Cell division protein CrgA LRR19-TM PF15176.6 gi|320101233|ref|YP_004176825.1| - 3.1 7.8 5.0 0.42 10.6 1.0 1.6 1 1 1 2 2 2 0 Leucine-rich repeat family 19 TM domain TMEM43 PF07787.12 gi|320101233|ref|YP_004176825.1| - 3.8 6.8 6.4 4.1 6.7 6.4 1.1 1 0 0 1 1 1 0 Transmembrane protein 43 AA_kinase PF00696.28 gi|320101234|ref|YP_004176826.1| - 5.9e-27 94.8 0.0 7.4e-27 94.5 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family GT87 PF09594.10 gi|320101235|ref|YP_004176827.1| - 3.1e-10 40.2 26.3 3.1e-10 40.2 26.3 2.8 2 1 1 3 3 3 1 Glycosyltransferase family 87 Sensor_TM1 PF13755.6 gi|320101235|ref|YP_004176827.1| - 0.024 14.4 1.5 0.75 9.6 0.4 3.0 2 0 0 2 2 2 0 Sensor N-terminal transmembrane domain Aldedh PF00171.22 gi|320101236|ref|YP_004176828.1| - 9.8e-121 403.5 0.0 1.1e-120 403.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|320101236|ref|YP_004176828.1| - 0.00023 20.3 0.0 0.0028 16.7 0.0 2.0 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) TRAM PF01938.20 gi|320101237|ref|YP_004176829.1| - 0.0016 18.4 0.3 0.0027 17.7 0.3 1.4 1 0 0 1 1 1 1 TRAM domain Chlam_vir PF05475.11 gi|320101238|ref|YP_004176830.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.4 1 1 0 1 1 1 0 Pgp3 C-terminal domain Adenosine_kin PF04008.14 gi|320101239|ref|YP_004176831.1| - 9.2e-74 246.4 0.1 1.1e-73 246.2 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DNA_binding_1 PF01035.20 gi|320101240|ref|YP_004176832.1| - 9.8e-22 76.9 0.0 1.2e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain MoCF_biosynth PF00994.24 gi|320101241|ref|YP_004176833.1| - 6.9e-27 93.9 0.0 8.2e-27 93.6 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain M60-like_N PF17291.2 gi|320101241|ref|YP_004176833.1| - 0.16 11.8 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of M60-like peptidases HAD_2 PF13419.6 gi|320101242|ref|YP_004176834.1| - 1.1e-13 51.6 0.0 3e-13 50.3 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|320101242|ref|YP_004176834.1| - 1.2e-06 28.9 0.0 5.1e-06 26.9 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|320101242|ref|YP_004176834.1| - 2.7e-05 24.1 0.0 5.3e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Pyrophosphatase PF00719.19 gi|320101244|ref|YP_004176836.1| - 1.9e-57 193.6 0.0 2.1e-57 193.4 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF1351 PF07083.11 gi|320101245|ref|YP_004176837.1| - 0.00073 19.4 2.2 0.001 18.9 2.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1351) Prefoldin PF02996.17 gi|320101245|ref|YP_004176837.1| - 0.0019 18.1 2.5 0.59 10.1 0.1 2.4 2 0 0 2 2 2 2 Prefoldin subunit Sec5 PF15469.6 gi|320101245|ref|YP_004176837.1| - 0.013 15.4 0.9 0.013 15.4 0.9 1.9 1 1 1 2 2 2 0 Exocyst complex component Sec5 Rho_Binding PF08912.11 gi|320101245|ref|YP_004176837.1| - 0.014 16.2 0.9 0.072 13.9 0.4 2.0 2 0 0 2 2 2 0 Rho Binding HU-CCDC81_bac_2 PF18175.1 gi|320101245|ref|YP_004176837.1| - 0.018 14.9 0.3 0.086 12.7 0.1 2.1 2 0 0 2 2 2 0 CCDC81-like prokaryotic HU domain 2 CREPT PF16566.5 gi|320101245|ref|YP_004176837.1| - 0.021 15.0 2.0 0.025 14.8 0.8 1.7 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour SOAR PF16533.5 gi|320101245|ref|YP_004176837.1| - 0.024 14.6 1.2 0.074 13.0 1.1 1.9 1 1 0 1 1 1 0 STIM1 Orai1-activating region FliJ PF02050.16 gi|320101245|ref|YP_004176837.1| - 0.033 14.4 0.9 0.039 14.2 0.1 1.5 2 0 0 2 2 2 0 Flagellar FliJ protein Syntaxin_2 PF14523.6 gi|320101245|ref|YP_004176837.1| - 0.047 14.1 2.5 8 6.9 0.9 2.2 2 0 0 2 2 2 0 Syntaxin-like protein BLOC1_2 PF10046.9 gi|320101245|ref|YP_004176837.1| - 0.22 11.8 4.7 4.9 7.5 1.0 2.5 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4094 PF13334.6 gi|320101245|ref|YP_004176837.1| - 0.32 11.5 2.8 1.3 9.5 0.2 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4094) NPV_P10 PF05531.12 gi|320101245|ref|YP_004176837.1| - 2 9.0 6.8 1.1e+02 3.3 7.0 2.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein CoA_binding PF02629.19 gi|320101246|ref|YP_004176838.1| - 1.2e-26 93.3 0.8 2.5e-26 92.2 0.3 1.8 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|320101246|ref|YP_004176838.1| - 5.3e-14 52.3 0.0 8.3e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|320101246|ref|YP_004176838.1| - 1.7e-13 50.6 0.0 1.3e-12 47.6 0.0 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|320101246|ref|YP_004176838.1| - 1.5e-07 31.9 0.1 3.1e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|320101247|ref|YP_004176839.1| - 6.6e-59 198.9 0.1 4.1e-58 196.3 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|320101247|ref|YP_004176839.1| - 2.6e-20 72.8 0.5 4.3e-20 72.1 0.5 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|320101247|ref|YP_004176839.1| - 4.2e-11 42.7 0.1 2.5e-10 40.2 0.1 2.2 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|320101247|ref|YP_004176839.1| - 7.9e-05 22.5 0.1 0.00015 21.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Succ_CoA_lig PF13607.6 gi|320101247|ref|YP_004176839.1| - 0.00087 19.1 0.9 0.0026 17.6 0.1 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain NAD_binding_10 PF13460.6 gi|320101247|ref|YP_004176839.1| - 0.0065 16.4 1.2 0.011 15.6 0.3 1.8 2 0 0 2 2 2 1 NAD(P)H-binding ATP-grasp PF02222.22 gi|320101247|ref|YP_004176839.1| - 0.045 13.3 0.0 0.079 12.5 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain PNP_UDP_1 PF01048.20 gi|320101249|ref|YP_004176841.1| - 2e-48 164.7 0.0 2.3e-48 164.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pribosyltran PF00156.27 gi|320101250|ref|YP_004176842.1| - 6.7e-16 58.2 0.0 9.9e-16 57.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Flavin_Reduct PF01613.18 gi|320101251|ref|YP_004176843.1| - 1.9e-28 99.4 0.0 2.2e-28 99.2 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Arabinose_trans PF04602.12 gi|320101252|ref|YP_004176844.1| - 0.015 14.2 2.1 0.017 14.0 2.1 1.1 1 0 0 1 1 1 0 Mycobacterial cell wall arabinan synthesis protein LtrA PF06772.11 gi|320101252|ref|YP_004176844.1| - 0.019 14.2 4.8 0.023 13.9 4.8 1.1 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) DUF2568 PF10823.8 gi|320101252|ref|YP_004176844.1| - 0.023 15.0 0.6 0.023 15.0 0.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2568) DUF202 PF02656.15 gi|320101252|ref|YP_004176844.1| - 6.1 7.4 10.3 2.8 8.4 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) RimK PF08443.11 gi|320101253|ref|YP_004176845.1| - 1.4e-21 77.0 0.0 1.8e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|320101253|ref|YP_004176845.1| - 5.5e-10 38.9 0.0 8e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|320101253|ref|YP_004176845.1| - 6.5e-07 29.5 0.0 2e-06 27.9 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Ins134_P3_kin PF05770.11 gi|320101253|ref|YP_004176845.1| - 1.8e-06 27.6 0.0 0.021 14.3 0.0 2.2 1 1 1 2 2 2 2 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain ATPgrasp_ST PF14397.6 gi|320101253|ref|YP_004176845.1| - 5e-06 26.0 0.0 0.063 12.5 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp R2K_3 PF14243.6 gi|320101253|ref|YP_004176845.1| - 0.00047 20.2 0.3 0.00086 19.4 0.3 1.3 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 ATPgrasp_YheCD PF14398.6 gi|320101253|ref|YP_004176845.1| - 0.002 17.4 0.0 0.67 9.2 0.0 2.2 2 0 0 2 2 2 2 YheC/D like ATP-grasp Dala_Dala_lig_C PF07478.13 gi|320101253|ref|YP_004176845.1| - 0.087 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus DUF2999 PF11212.8 gi|320101253|ref|YP_004176845.1| - 0.18 12.1 0.0 17 5.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2999) DUF4795 PF16043.5 gi|320101254|ref|YP_004176846.1| - 0.13 11.8 0.1 0.13 11.8 0.1 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Radical_SAM PF04055.21 gi|320101255|ref|YP_004176847.1| - 7.4e-14 52.5 0.0 1.5e-13 51.4 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|320101255|ref|YP_004176847.1| - 7.1e-05 23.1 0.0 0.00013 22.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|320101255|ref|YP_004176847.1| - 0.011 15.8 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain tRNA-synt_1 PF00133.22 gi|320101257|ref|YP_004176849.1| - 1.4e-110 370.3 0.0 3.7e-109 365.7 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|320101257|ref|YP_004176849.1| - 1.9e-29 102.6 0.3 3.5e-29 101.7 0.3 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|320101257|ref|YP_004176849.1| - 2e-28 99.3 1.0 2.7e-14 52.7 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|320101257|ref|YP_004176849.1| - 2e-05 24.2 0.0 0.0023 17.5 0.0 2.3 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 Mut7-C PF01927.16 gi|320101257|ref|YP_004176849.1| - 0.00079 19.6 0.5 3.7 7.6 0.3 4.1 2 2 0 2 2 2 2 Mut7-C RNAse domain zf-TFIIB PF13453.6 gi|320101257|ref|YP_004176849.1| - 0.028 13.7 2.1 5.8 6.3 0.0 3.5 3 0 0 3 3 3 0 Transcription factor zinc-finger tRNA-synt_1f PF01921.18 gi|320101257|ref|YP_004176849.1| - 0.03 13.2 0.0 1.5 7.6 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (K) DZR PF12773.7 gi|320101257|ref|YP_004176849.1| - 0.085 12.9 0.7 9.5 6.3 0.1 3.0 3 0 0 3 3 3 0 Double zinc ribbon tRNA-synt_1e PF01406.19 gi|320101257|ref|YP_004176849.1| - 0.11 11.8 0.0 4.8 6.4 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain zf-ACC PF17848.1 gi|320101257|ref|YP_004176849.1| - 4 7.6 6.8 1e+02 3.1 0.1 4.3 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain PHP_C PF13263.6 gi|320101258|ref|YP_004176850.1| - 6.6e-17 61.0 0.1 1.3e-16 60.1 0.1 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|320101258|ref|YP_004176850.1| - 4.2e-06 27.2 0.0 5.2e-06 26.9 0.0 1.4 1 1 0 1 1 1 1 PHP domain Fer4 PF00037.27 gi|320101259|ref|YP_004176851.1| - 5.8e-13 48.1 12.6 5.7e-07 29.1 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|320101259|ref|YP_004176851.1| - 5.9e-10 38.8 11.8 2.4e-05 24.2 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|320101259|ref|YP_004176851.1| - 1.5e-09 37.3 11.8 8.4e-05 22.4 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|320101259|ref|YP_004176851.1| - 7.6e-09 35.5 21.7 7.7e-07 29.1 11.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|320101259|ref|YP_004176851.1| - 1.9e-08 34.8 11.9 3.6e-08 33.9 12.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|320101259|ref|YP_004176851.1| - 6.3e-08 32.7 8.6 1e-07 32.0 8.6 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|320101259|ref|YP_004176851.1| - 1.1e-06 28.6 11.8 0.0057 17.1 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|320101259|ref|YP_004176851.1| - 7e-06 26.4 9.0 0.011 16.2 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|320101259|ref|YP_004176851.1| - 4.5e-05 24.3 9.7 0.027 15.4 0.5 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|320101259|ref|YP_004176851.1| - 5.8e-05 23.7 7.7 0.0017 19.1 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|320101259|ref|YP_004176851.1| - 6.8e-05 22.9 13.1 0.024 14.8 2.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|320101259|ref|YP_004176851.1| - 0.00014 22.4 8.4 0.0061 17.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|320101259|ref|YP_004176851.1| - 0.00035 21.0 13.9 0.029 14.9 2.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|320101259|ref|YP_004176851.1| - 0.00058 20.6 19.1 0.055 14.4 5.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|320101259|ref|YP_004176851.1| - 0.018 15.3 8.5 0.27 11.4 8.7 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|320101259|ref|YP_004176851.1| - 0.043 13.6 2.4 0.043 13.6 2.4 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ETF_QO PF05187.13 gi|320101259|ref|YP_004176851.1| - 0.093 12.9 4.9 0.17 12.0 4.9 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Dynactin_p62 PF05502.13 gi|320101259|ref|YP_004176851.1| - 6.8 5.4 7.6 7.5 5.2 7.6 1.0 1 0 0 1 1 1 0 Dynactin p62 family DZR PF12773.7 gi|320101260|ref|YP_004176852.1| - 0.003 17.6 5.3 0.19 11.8 2.9 2.2 1 1 1 2 2 2 2 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|320101260|ref|YP_004176852.1| - 0.003 17.6 3.1 0.037 14.1 0.1 2.2 1 1 1 2 2 2 1 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|320101260|ref|YP_004176852.1| - 0.005 16.7 11.2 17 5.4 9.4 3.3 2 1 0 2 2 2 0 SprT-like zinc ribbon domain DUF1272 PF06906.11 gi|320101260|ref|YP_004176852.1| - 0.015 15.4 5.3 1.2 9.3 5.3 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Prok-RING_1 PF14446.6 gi|320101260|ref|YP_004176852.1| - 0.016 15.1 2.3 0.89 9.5 0.6 2.3 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.6 gi|320101260|ref|YP_004176852.1| - 0.026 13.9 5.2 2.2 7.7 1.4 2.5 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-C3HC4_3 PF13920.6 gi|320101260|ref|YP_004176852.1| - 0.028 14.3 5.7 0.32 10.9 5.7 2.2 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C6H2 PF15801.5 gi|320101260|ref|YP_004176852.1| - 0.028 14.7 3.2 0.028 14.7 3.2 2.6 1 1 1 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding TF_Zn_Ribbon PF08271.12 gi|320101260|ref|YP_004176852.1| - 0.056 13.0 8.5 0.58 9.7 1.6 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-FPG_IleRS PF06827.14 gi|320101260|ref|YP_004176852.1| - 0.13 12.1 8.9 0.93 9.4 0.4 3.5 4 0 0 4 4 4 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.6 gi|320101260|ref|YP_004176852.1| - 0.13 11.7 9.3 2.3 7.8 0.3 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-piccolo PF05715.13 gi|320101260|ref|YP_004176852.1| - 0.22 11.7 3.7 0.56 10.4 1.0 2.1 2 0 0 2 2 2 0 Piccolo Zn-finger PyrI_C PF02748.15 gi|320101260|ref|YP_004176852.1| - 0.32 10.9 5.1 0.68 9.9 3.1 2.1 2 1 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DnaJ_CXXCXGXG PF00684.19 gi|320101260|ref|YP_004176852.1| - 0.33 11.3 5.1 1.4 9.3 3.5 2.2 1 1 0 1 1 1 0 DnaJ central domain DpnI PF06044.12 gi|320101260|ref|YP_004176852.1| - 0.49 10.0 4.2 0.17 11.5 2.1 1.3 1 1 0 1 1 1 0 Dam-replacing family Zn_Tnp_IS1595 PF12760.7 gi|320101260|ref|YP_004176852.1| - 0.52 10.3 9.4 0.68 10.0 5.3 2.6 1 1 2 3 3 3 0 Transposase zinc-ribbon domain Rubredoxin PF00301.20 gi|320101260|ref|YP_004176852.1| - 0.56 10.3 6.5 16 5.6 0.1 3.1 2 1 0 2 2 2 0 Rubredoxin Anti-TRAP PF15777.5 gi|320101260|ref|YP_004176852.1| - 0.59 10.1 4.0 4.3 7.4 0.1 2.2 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein C1_2 PF03107.16 gi|320101260|ref|YP_004176852.1| - 0.63 10.4 11.5 0.26 11.6 2.1 2.4 1 1 1 2 2 2 0 C1 domain C1_1 PF00130.22 gi|320101260|ref|YP_004176852.1| - 0.73 9.8 6.1 13 5.7 6.1 2.2 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF4428 PF14471.6 gi|320101260|ref|YP_004176852.1| - 1.4 8.9 6.2 0.24 11.3 1.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-C3H2C3 PF17122.5 gi|320101260|ref|YP_004176852.1| - 3.5 7.8 9.3 1.8 8.7 1.3 3.0 2 2 0 2 2 2 0 Zinc-finger PhnA_Zn_Ribbon PF08274.12 gi|320101260|ref|YP_004176852.1| - 3.7 7.6 6.9 18 5.4 2.2 2.6 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zf-Di19 PF05605.12 gi|320101260|ref|YP_004176852.1| - 4.9 7.5 9.6 2.2 8.6 0.6 3.0 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding A2L_zn_ribbon PF08792.10 gi|320101260|ref|YP_004176852.1| - 5.9 6.7 10.4 2 8.2 0.9 2.6 3 0 0 3 3 2 0 A2L zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|320101260|ref|YP_004176852.1| - 9.4 6.1 10.6 14 5.5 1.4 2.4 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Metallophos PF00149.28 gi|320101261|ref|YP_004176853.1| - 4.6e-14 53.4 0.0 6.1e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|320101261|ref|YP_004176853.1| - 1.6e-09 38.1 0.2 3.5e-08 33.8 0.0 2.0 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain HD PF01966.22 gi|320101263|ref|YP_004176855.1| - 5.2e-12 46.1 0.3 1.2e-11 44.9 0.1 1.7 2 0 0 2 2 2 1 HD domain RMI1_C PF16099.5 gi|320101263|ref|YP_004176855.1| - 0.14 11.9 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Recq-mediated genome instability protein 1, C-terminal OB-fold HTH_54 PF18607.1 gi|320101263|ref|YP_004176855.1| - 0.17 12.0 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 ParA helix turn helix domain AGOG PF09171.10 gi|320101264|ref|YP_004176856.1| - 2.5e-38 131.8 0.0 3.3e-38 131.4 0.0 1.1 1 0 0 1 1 1 1 N-glycosylase/DNA lyase EF-hand_6 PF13405.6 gi|320101264|ref|YP_004176856.1| - 0.1 12.6 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 EF-hand domain Nitro_FeMo-Co PF02579.17 gi|320101265|ref|YP_004176857.1| - 1.5e-07 31.7 0.0 2.5e-07 31.0 0.0 1.3 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor SH3_4 PF06347.13 gi|320101265|ref|YP_004176857.1| - 0.051 13.4 0.1 11 6.0 0.1 2.3 2 0 0 2 2 2 0 Bacterial SH3 domain DUF2283 PF10049.9 gi|320101267|ref|YP_004176859.1| - 3.4e-12 46.4 0.8 4.2e-12 46.1 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) SMODS PF18144.1 gi|320101268|ref|YP_004176860.1| - 0.08 13.1 0.1 0.1 12.8 0.1 1.1 1 0 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Methyltr_RsmB-F PF01189.17 gi|320101269|ref|YP_004176861.1| - 2.2e-39 135.2 0.0 2.9e-39 134.8 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|320101269|ref|YP_004176861.1| - 3.5e-08 33.3 0.0 6.8e-08 32.4 0.0 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 gi|320101269|ref|YP_004176861.1| - 0.0016 18.2 0.0 0.0034 17.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|320101269|ref|YP_004176861.1| - 0.0036 17.9 0.0 0.14 12.8 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|320101269|ref|YP_004176861.1| - 0.0054 17.4 0.0 1.3 9.8 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.19 gi|320101269|ref|YP_004176861.1| - 0.012 15.8 0.0 0.027 14.6 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Cons_hypoth95 PF03602.15 gi|320101269|ref|YP_004176861.1| - 0.069 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|320101269|ref|YP_004176861.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein PIN_6 PF17146.4 gi|320101270|ref|YP_004176862.1| - 2.7e-13 50.2 0.1 3.6e-13 49.8 0.1 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease zf-ribbon_3 PF13248.6 gi|320101270|ref|YP_004176862.1| - 7.6e-06 25.2 3.2 1.2e-05 24.5 3.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|320101270|ref|YP_004176862.1| - 0.0019 18.2 0.4 0.0032 17.4 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|320101270|ref|YP_004176862.1| - 0.0077 16.4 2.8 0.16 12.2 0.2 2.4 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.19 gi|320101270|ref|YP_004176862.1| - 0.086 12.6 1.6 1 9.2 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Rad50_zn_hook PF04423.14 gi|320101270|ref|YP_004176862.1| - 0.092 12.6 0.2 0.092 12.6 0.2 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C2HC5 PF06221.13 gi|320101270|ref|YP_004176862.1| - 0.092 12.7 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zinc_ribbon_2 PF13240.6 gi|320101270|ref|YP_004176862.1| - 0.098 12.4 7.5 0.58 9.9 7.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|320101270|ref|YP_004176862.1| - 0.14 12.1 3.3 2.7 8.0 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|320101270|ref|YP_004176862.1| - 0.25 11.5 4.5 2.1 8.5 0.7 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DUF2256 PF10013.9 gi|320101270|ref|YP_004176862.1| - 0.42 10.8 0.1 0.42 10.8 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) DNA_ligase_ZBD PF03119.16 gi|320101270|ref|YP_004176862.1| - 0.5 10.4 0.1 0.5 10.4 0.1 2.7 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.9 gi|320101270|ref|YP_004176862.1| - 0.54 10.4 5.1 9.4 6.4 0.7 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 gi|320101270|ref|YP_004176862.1| - 0.63 9.8 5.1 2 8.1 0.8 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain NAD_kinase PF01513.21 gi|320101271|ref|YP_004176863.1| - 2.1e-11 43.6 0.1 4.1e-11 42.6 0.1 1.5 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|320101271|ref|YP_004176863.1| - 0.0014 18.3 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Met_10 PF02475.16 gi|320101272|ref|YP_004176864.1| - 2.7e-40 138.2 0.0 3.9e-40 137.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|320101272|ref|YP_004176864.1| - 1.7e-06 27.8 0.0 3.9e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|320101272|ref|YP_004176864.1| - 0.00021 20.8 0.0 0.00031 20.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltrans_SAM PF10672.9 gi|320101272|ref|YP_004176864.1| - 0.0075 15.5 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase DNA_methylase PF00145.17 gi|320101272|ref|YP_004176864.1| - 0.024 14.0 0.0 0.034 13.5 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase MethyltransfD12 PF02086.15 gi|320101272|ref|YP_004176864.1| - 0.16 11.6 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase DUF371 PF04027.13 gi|320101273|ref|YP_004176865.1| - 6e-46 155.7 0.0 7e-46 155.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PCMT PF01135.19 gi|320101274|ref|YP_004176866.1| - 5.3e-66 222.4 0.0 6.4e-66 222.1 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|320101274|ref|YP_004176866.1| - 7.4e-08 32.3 0.0 9.3e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|320101274|ref|YP_004176866.1| - 9.4e-06 26.3 0.0 1.3e-05 25.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|320101274|ref|YP_004176866.1| - 3.6e-05 24.7 0.0 5.3e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|320101274|ref|YP_004176866.1| - 0.00016 21.5 0.0 0.00023 20.9 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_11 PF08241.12 gi|320101274|ref|YP_004176866.1| - 0.00093 19.8 0.0 0.0015 19.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|320101274|ref|YP_004176866.1| - 0.0024 17.0 0.0 0.0037 16.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|320101274|ref|YP_004176866.1| - 0.0066 16.5 0.0 0.0096 15.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|320101274|ref|YP_004176866.1| - 0.085 12.0 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin CMAS PF02353.20 gi|320101274|ref|YP_004176866.1| - 0.093 12.0 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.17 gi|320101274|ref|YP_004176866.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_23 PF13489.6 gi|320101274|ref|YP_004176866.1| - 0.16 11.8 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain XPG_I PF00867.18 gi|320101275|ref|YP_004176867.1| - 8.6e-28 96.5 0.0 1.4e-27 95.9 0.0 1.3 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|320101275|ref|YP_004176867.1| - 3.7e-22 78.7 0.0 6.9e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|320101275|ref|YP_004176867.1| - 0.00055 20.5 0.2 0.0018 18.8 0.0 2.0 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|320101275|ref|YP_004176867.1| - 0.045 14.4 0.1 0.26 11.9 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain HTH_20 PF12840.7 gi|320101276|ref|YP_004176868.1| - 0.001 19.1 0.0 0.0013 18.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 gi|320101276|ref|YP_004176868.1| - 0.039 13.9 0.1 0.053 13.5 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DNAJ_related PF12339.8 gi|320101276|ref|YP_004176868.1| - 0.075 13.3 0.0 0.093 13.0 0.0 1.1 1 0 0 1 1 1 0 DNA-J related protein AAA PF00004.29 gi|320101277|ref|YP_004176869.1| - 4.9e-99 327.9 0.0 2.3e-49 167.2 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|320101277|ref|YP_004176869.1| - 1.2e-34 117.8 0.0 7.2e-17 60.9 0.0 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|320101277|ref|YP_004176869.1| - 1.8e-19 69.7 0.1 6.3e-19 67.9 0.1 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|320101277|ref|YP_004176869.1| - 1.4e-15 57.4 0.0 3.5e-07 30.1 0.0 3.2 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|320101277|ref|YP_004176869.1| - 8.3e-15 55.6 0.2 3.5e-06 27.5 0.0 4.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|320101277|ref|YP_004176869.1| - 5.6e-14 52.6 0.0 7.4e-08 32.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|320101277|ref|YP_004176869.1| - 9.7e-13 48.3 0.9 5.8e-06 26.3 0.1 3.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|320101277|ref|YP_004176869.1| - 7.2e-11 41.9 0.0 0.00028 20.2 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|320101277|ref|YP_004176869.1| - 9.6e-11 42.1 0.9 0.00028 21.1 0.1 3.9 2 2 1 3 3 2 2 AAA domain AAA_33 PF13671.6 gi|320101277|ref|YP_004176869.1| - 2.2e-10 40.9 0.0 9.1e-05 22.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|320101277|ref|YP_004176869.1| - 5.3e-10 39.4 0.0 0.00053 20.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|320101277|ref|YP_004176869.1| - 2.8e-08 34.1 0.0 0.0041 17.5 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.6 gi|320101277|ref|YP_004176869.1| - 2.8e-08 34.4 0.0 0.0046 17.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|320101277|ref|YP_004176869.1| - 9.9e-08 32.4 0.1 0.0051 17.1 0.0 2.7 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.17 gi|320101277|ref|YP_004176869.1| - 1e-07 31.9 0.0 0.0083 15.9 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|320101277|ref|YP_004176869.1| - 2e-07 30.6 0.4 0.017 14.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI CDC48_2 PF02933.17 gi|320101277|ref|YP_004176869.1| - 2.7e-07 30.3 0.4 5.3e-07 29.3 0.4 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_24 PF13479.6 gi|320101277|ref|YP_004176869.1| - 3.1e-07 30.3 0.0 0.0038 17.0 0.0 2.7 2 1 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|320101277|ref|YP_004176869.1| - 3.7e-07 29.6 0.0 0.034 13.3 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|320101277|ref|YP_004176869.1| - 8e-07 29.2 2.4 0.19 11.6 0.3 3.8 2 2 1 3 3 3 2 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|320101277|ref|YP_004176869.1| - 3e-06 27.2 0.0 0.078 13.0 0.0 2.6 3 0 0 3 3 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|320101277|ref|YP_004176869.1| - 5.1e-06 26.4 0.0 0.072 12.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|320101277|ref|YP_004176869.1| - 5.5e-06 26.9 0.0 0.17 12.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter Zeta_toxin PF06414.12 gi|320101277|ref|YP_004176869.1| - 6e-06 25.7 0.1 0.068 12.4 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin Sigma54_activat PF00158.26 gi|320101277|ref|YP_004176869.1| - 7.2e-06 25.8 0.1 0.093 12.4 0.0 3.1 2 1 0 2 2 2 2 Sigma-54 interaction domain ATPase PF06745.13 gi|320101277|ref|YP_004176869.1| - 1.2e-05 24.7 0.4 0.27 10.5 0.0 3.4 2 1 1 3 3 3 2 KaiC AAA_7 PF12775.7 gi|320101277|ref|YP_004176869.1| - 1.5e-05 24.6 0.0 0.041 13.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|320101277|ref|YP_004176869.1| - 2e-05 23.8 0.2 0.024 13.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Rad17 PF03215.15 gi|320101277|ref|YP_004176869.1| - 2.5e-05 24.3 0.0 0.12 12.3 0.0 3.1 2 1 1 3 3 3 1 Rad17 P-loop domain Bac_DnaA PF00308.18 gi|320101277|ref|YP_004176869.1| - 3.4e-05 23.8 0.0 0.022 14.6 0.0 2.7 2 1 0 2 2 2 1 Bacterial dnaA protein NACHT PF05729.12 gi|320101277|ref|YP_004176869.1| - 3.5e-05 23.8 0.3 0.35 10.8 0.1 3.0 3 0 0 3 3 3 2 NACHT domain PhoH PF02562.16 gi|320101277|ref|YP_004176869.1| - 0.00035 20.1 0.4 0.76 9.2 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein AAA_17 PF13207.6 gi|320101277|ref|YP_004176869.1| - 0.00043 20.7 0.0 1.7 9.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|320101277|ref|YP_004176869.1| - 0.00057 19.2 0.0 0.048 12.9 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|320101277|ref|YP_004176869.1| - 0.00063 19.4 6.4 0.44 10.1 0.1 3.7 2 2 1 3 3 3 2 AAA domain AAA_11 PF13086.6 gi|320101277|ref|YP_004176869.1| - 0.00082 19.2 0.0 0.63 9.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|320101277|ref|YP_004176869.1| - 0.00091 18.5 0.0 1.1 8.4 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Viral_helicase1 PF01443.18 gi|320101277|ref|YP_004176869.1| - 0.0021 17.8 0.0 0.71 9.6 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase UFD1 PF03152.14 gi|320101277|ref|YP_004176869.1| - 0.0023 17.4 0.0 0.0041 16.6 0.0 1.4 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 PduV-EutP PF10662.9 gi|320101277|ref|YP_004176869.1| - 0.0033 17.2 0.0 2.8 7.7 0.0 2.9 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation Sigma54_activ_2 PF14532.6 gi|320101277|ref|YP_004176869.1| - 0.0038 17.3 0.0 4.3 7.4 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain SKI PF01202.22 gi|320101277|ref|YP_004176869.1| - 0.0069 16.5 0.0 3.7 7.7 0.0 2.4 2 0 0 2 2 2 0 Shikimate kinase AFG1_ATPase PF03969.16 gi|320101277|ref|YP_004176869.1| - 0.011 14.7 0.4 1.5 7.7 0.1 2.4 2 1 0 2 2 2 0 AFG1-like ATPase NTPase_1 PF03266.15 gi|320101277|ref|YP_004176869.1| - 0.012 15.6 1.0 12 5.8 0.0 3.6 2 1 1 3 3 3 0 NTPase AAA_30 PF13604.6 gi|320101277|ref|YP_004176869.1| - 0.021 14.6 1.2 1.7 8.4 0.0 2.9 3 0 0 3 3 2 0 AAA domain AAA_19 PF13245.6 gi|320101277|ref|YP_004176869.1| - 0.023 15.1 4.0 5 7.4 0.1 3.3 2 2 1 3 3 3 0 AAA domain Cytidylate_kin PF02224.18 gi|320101277|ref|YP_004176869.1| - 0.025 14.3 0.1 3.2 7.4 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase T2SSE PF00437.20 gi|320101277|ref|YP_004176869.1| - 0.026 13.6 0.0 0.29 10.2 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein DAP3 PF10236.9 gi|320101277|ref|YP_004176869.1| - 0.047 12.9 0.0 4 6.5 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Guanylate_kin PF00625.21 gi|320101277|ref|YP_004176869.1| - 0.047 13.4 0.1 29 4.3 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase Vps4_C PF09336.10 gi|320101277|ref|YP_004176869.1| - 0.061 13.3 0.0 3.7 7.6 0.0 2.7 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain ATP-synt_ab PF00006.25 gi|320101277|ref|YP_004176869.1| - 0.067 12.8 0.0 9.6 5.8 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain IPT PF01745.16 gi|320101277|ref|YP_004176869.1| - 0.077 12.4 0.1 9.3 5.6 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase KAP_NTPase PF07693.14 gi|320101277|ref|YP_004176869.1| - 0.078 12.2 0.1 29 3.8 0.1 3.0 2 1 1 3 3 3 0 KAP family P-loop domain SRPRB PF09439.10 gi|320101277|ref|YP_004176869.1| - 0.083 12.3 0.0 15 5.0 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Cytidylate_kin2 PF13189.6 gi|320101277|ref|YP_004176869.1| - 0.1 12.7 0.0 8.6 6.4 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family ResIII PF04851.15 gi|320101277|ref|YP_004176869.1| - 0.13 12.3 0.0 7.9 6.5 0.0 2.5 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|320101277|ref|YP_004176869.1| - 0.22 11.3 0.0 27 4.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_6 PF12774.7 gi|320101277|ref|YP_004176869.1| - 0.3 10.0 0.1 1.3 7.9 0.0 1.9 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region DUF5320 PF17253.2 gi|320101278|ref|YP_004176870.1| - 6.7e-05 23.9 0.1 0.00012 23.1 0.0 1.4 1 1 0 1 1 1 1 Family of unknown function (DUF5320) Helo_like_N PF17111.5 gi|320101278|ref|YP_004176870.1| - 0.05 13.0 0.0 0.057 12.8 0.0 1.0 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins Prefoldin_2 PF01920.20 gi|320101278|ref|YP_004176870.1| - 0.12 12.3 0.1 0.15 12.0 0.1 1.0 1 0 0 1 1 1 0 Prefoldin subunit DUF134 PF02001.16 gi|320101279|ref|YP_004176871.1| - 1.5e-21 76.7 0.0 1.8e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 gi|320101279|ref|YP_004176871.1| - 2.2e-05 23.9 0.0 3.2e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|320101279|ref|YP_004176871.1| - 0.00074 19.1 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|320101279|ref|YP_004176871.1| - 0.0043 16.8 3.9 0.011 15.5 0.0 2.6 2 1 1 3 3 3 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|320101279|ref|YP_004176871.1| - 0.017 15.0 0.1 0.021 14.7 0.1 1.1 1 0 0 1 1 1 0 ECF sigma factor HTH_1 PF00126.27 gi|320101279|ref|YP_004176871.1| - 0.02 14.8 0.0 0.026 14.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.6 gi|320101279|ref|YP_004176871.1| - 0.023 15.0 1.3 0.028 14.8 1.3 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|320101279|ref|YP_004176871.1| - 0.082 13.1 0.0 0.082 13.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|320101279|ref|YP_004176871.1| - 0.18 11.8 2.4 0.2 11.7 0.5 2.0 2 1 0 2 2 2 0 Winged helix-turn helix HTH_45 PF14947.6 gi|320101280|ref|YP_004176872.1| - 5e-05 23.2 0.1 6.7e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix PadR PF03551.14 gi|320101280|ref|YP_004176872.1| - 0.0029 17.5 0.3 0.0076 16.2 0.3 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|320101280|ref|YP_004176872.1| - 0.0097 14.3 0.0 0.0097 14.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_12 PF08461.10 gi|320101280|ref|YP_004176872.1| - 0.024 14.6 0.1 0.042 13.8 0.1 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|320101280|ref|YP_004176872.1| - 0.035 14.2 0.4 0.17 12.0 0.4 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.27 gi|320101281|ref|YP_004176873.1| - 5.3e-34 117.7 0.0 8.3e-34 117.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|320101281|ref|YP_004176873.1| - 6.2e-10 39.2 1.2 2e-09 37.6 1.2 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|320101281|ref|YP_004176873.1| - 2.1e-06 27.7 0.1 0.047 13.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|320101281|ref|YP_004176873.1| - 4.1e-06 26.9 1.5 1.3e-05 25.2 1.3 2.1 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|320101281|ref|YP_004176873.1| - 0.012 15.1 0.0 0.32 10.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|320101281|ref|YP_004176873.1| - 0.024 15.0 0.0 0.053 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|320101281|ref|YP_004176873.1| - 0.027 14.8 0.1 0.062 13.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|320101281|ref|YP_004176873.1| - 0.036 14.0 0.0 0.065 13.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|320101281|ref|YP_004176873.1| - 0.054 13.9 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|320101281|ref|YP_004176873.1| - 0.1 12.9 0.0 0.27 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|320101281|ref|YP_004176873.1| - 0.13 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|320101281|ref|YP_004176873.1| - 0.14 12.6 0.0 0.26 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain KH_5 PF13184.6 gi|320101282|ref|YP_004176874.1| - 0.0086 16.1 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 NusA-like KH domain Pox_VLTF3 PF04947.14 gi|320101282|ref|YP_004176874.1| - 0.094 12.4 0.1 0.19 11.4 0.1 1.5 1 1 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like EFP PF01132.20 gi|320101282|ref|YP_004176874.1| - 0.17 11.9 0.1 23 5.1 0.0 2.6 2 1 1 3 3 3 0 Elongation factor P (EF-P) OB domain TruD PF01142.18 gi|320101283|ref|YP_004176875.1| - 7.3e-47 160.1 0.0 8.6e-39 133.5 0.0 3.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) DUF1514 PF07438.11 gi|320101283|ref|YP_004176875.1| - 0.24 11.3 1.7 0.62 10.0 1.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1514) PTH2 PF01981.16 gi|320101284|ref|YP_004176876.1| - 1.3e-39 135.1 0.0 1.5e-39 134.9 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 NAD_binding_10 PF13460.6 gi|320101284|ref|YP_004176876.1| - 0.013 15.4 0.0 0.016 15.1 0.0 1.1 1 0 0 1 1 1 0 NAD(P)H-binding Acylphosphatase PF00708.18 gi|320101284|ref|YP_004176876.1| - 0.13 12.7 0.0 0.28 11.6 0.0 1.6 1 1 0 1 1 1 0 Acylphosphatase DUF1610 PF07754.11 gi|320101285|ref|YP_004176877.1| - 5e-08 32.8 15.1 6.2e-07 29.3 2.8 2.7 3 0 0 3 3 2 2 Domain of unknown function (DUF1610) DZR PF12773.7 gi|320101285|ref|YP_004176877.1| - 0.00014 21.8 11.7 0.0021 18.1 12.0 2.3 1 1 1 2 2 2 2 Double zinc ribbon zf-CHY PF05495.12 gi|320101285|ref|YP_004176877.1| - 0.0011 19.4 7.8 0.0019 18.7 7.8 1.5 1 1 0 1 1 1 1 CHY zinc finger zf-RING_7 PF02591.15 gi|320101285|ref|YP_004176877.1| - 0.0017 18.5 13.6 0.95 9.7 0.1 3.8 3 1 0 3 3 3 2 C4-type zinc ribbon domain HypA PF01155.19 gi|320101285|ref|YP_004176877.1| - 0.0046 17.0 7.6 0.023 14.7 0.2 2.1 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|320101285|ref|YP_004176877.1| - 0.0053 16.7 8.2 0.018 14.9 0.2 2.2 1 1 1 2 2 2 1 Putative transposase DNA-binding domain DUF2321 PF10083.9 gi|320101285|ref|YP_004176877.1| - 0.0063 16.1 1.8 0.0063 16.1 1.8 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2321) DUF1272 PF06906.11 gi|320101285|ref|YP_004176877.1| - 0.0069 16.5 11.2 0.11 12.6 2.0 2.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1272) His_Me_b4a2 PF18275.1 gi|320101285|ref|YP_004176877.1| - 0.011 15.8 0.3 0.019 15.0 0.3 1.4 1 0 0 1 1 1 0 His-Me finger endonuclease beta4-alpha2 domain tRNA-synt_1f PF01921.18 gi|320101285|ref|YP_004176877.1| - 0.024 13.6 1.8 0.029 13.3 1.8 1.3 1 1 0 1 1 1 0 tRNA synthetases class I (K) zf-ribbon_3 PF13248.6 gi|320101285|ref|YP_004176877.1| - 0.045 13.2 17.9 0.12 11.8 3.9 3.4 3 1 0 3 3 3 0 zinc-ribbon domain DUF2752 PF10825.8 gi|320101285|ref|YP_004176877.1| - 0.05 13.7 1.6 8.3 6.6 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) PolC_DP2 PF03833.13 gi|320101285|ref|YP_004176877.1| - 0.058 11.3 2.6 0.058 11.3 2.6 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Acetone_carb_G PF08882.11 gi|320101285|ref|YP_004176877.1| - 0.059 13.5 5.7 0.91 9.7 0.8 2.3 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit DUF35_N PF12172.8 gi|320101285|ref|YP_004176877.1| - 0.073 13.0 2.9 0.073 13.0 2.9 3.2 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PSCyt3 PF07627.11 gi|320101285|ref|YP_004176877.1| - 0.076 13.3 0.1 0.076 13.3 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1588) zf-Mss51 PF13824.6 gi|320101285|ref|YP_004176877.1| - 0.093 12.8 9.0 1.6 8.9 1.1 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF1258 PF06869.12 gi|320101285|ref|YP_004176877.1| - 0.094 12.2 4.3 0.1 12.0 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zinc_ribbon_4 PF13717.6 gi|320101285|ref|YP_004176877.1| - 0.11 12.5 10.9 5 7.1 0.0 4.2 5 0 0 5 5 4 0 zinc-ribbon domain DpnI PF06044.12 gi|320101285|ref|YP_004176877.1| - 0.17 11.5 4.2 0.19 11.3 4.2 1.2 1 0 0 1 1 1 0 Dam-replacing family zf_C2H2_10 PF18414.1 gi|320101285|ref|YP_004176877.1| - 0.18 11.4 3.3 9.3 5.9 0.3 2.5 2 0 0 2 2 2 0 C2H2 type zinc-finger Zn-ribbon_8 PF09723.10 gi|320101285|ref|YP_004176877.1| - 0.27 11.4 17.5 5.1 7.3 0.2 3.7 2 1 0 2 2 2 0 Zinc ribbon domain Nop10p PF04135.12 gi|320101285|ref|YP_004176877.1| - 0.31 11.1 9.9 1.1 9.3 2.2 2.9 1 1 2 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family ADK_lid PF05191.14 gi|320101285|ref|YP_004176877.1| - 0.35 10.9 10.2 10 6.2 2.9 3.5 2 1 0 2 2 2 0 Adenylate kinase, active site lid NOB1_Zn_bind PF08772.11 gi|320101285|ref|YP_004176877.1| - 0.35 11.1 9.7 0.21 11.8 2.2 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.6 gi|320101285|ref|YP_004176877.1| - 0.36 10.8 12.6 4.8 7.2 1.3 3.9 3 1 1 4 4 4 0 Nudix N-terminal zf-LITAF-like PF10601.9 gi|320101285|ref|YP_004176877.1| - 0.68 10.2 14.7 37 4.7 7.5 3.7 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain C1_2 PF03107.16 gi|320101285|ref|YP_004176877.1| - 0.81 10.1 11.6 0.85 10.0 2.5 2.1 1 1 1 2 2 2 0 C1 domain zinc_ribbon_2 PF13240.6 gi|320101285|ref|YP_004176877.1| - 0.88 9.4 19.7 3.6 7.4 7.2 3.5 2 1 1 3 3 3 0 zinc-ribbon domain zf-HIT PF04438.16 gi|320101285|ref|YP_004176877.1| - 0.91 9.5 15.7 0.2 11.6 5.3 2.7 2 1 0 2 2 2 0 HIT zinc finger Mu-like_Com PF10122.9 gi|320101285|ref|YP_004176877.1| - 1.2 8.7 9.4 1.2 8.6 3.5 2.8 1 1 1 2 2 2 0 Mu-like prophage protein Com Auto_anti-p27 PF06677.12 gi|320101285|ref|YP_004176877.1| - 1.2 9.3 12.8 0.32 11.2 1.3 3.1 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Sgf11 PF08209.11 gi|320101285|ref|YP_004176877.1| - 1.3 8.7 0.1 1.3 8.7 0.1 3.8 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) TackOD1 PF18551.1 gi|320101285|ref|YP_004176877.1| - 1.9 8.1 9.5 6.3 6.4 3.2 2.1 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zf-MYND PF01753.18 gi|320101285|ref|YP_004176877.1| - 2.1 8.5 10.5 5.6 7.1 0.5 2.5 1 1 2 3 3 3 0 MYND finger zf_UBZ PF18439.1 gi|320101285|ref|YP_004176877.1| - 2.3 7.9 13.6 7.1 6.3 0.2 3.8 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-tcix PF14952.6 gi|320101285|ref|YP_004176877.1| - 2.6 7.8 11.6 1.8 8.2 4.0 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_10 PF10058.9 gi|320101285|ref|YP_004176877.1| - 3 7.6 16.5 6.9 6.5 3.9 3.5 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-B_box PF00643.24 gi|320101285|ref|YP_004176877.1| - 3.9 7.7 13.6 2.1 8.6 6.6 2.6 1 1 0 2 2 2 0 B-box zinc finger DUF2072 PF09845.9 gi|320101285|ref|YP_004176877.1| - 4.1 7.7 9.4 1.5 9.1 2.8 2.1 1 1 1 2 2 2 0 Zn-ribbon containing protein Rpr2 PF04032.16 gi|320101285|ref|YP_004176877.1| - 4.2 7.7 10.9 2.8e+02 1.9 10.9 3.1 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Dynactin_p62 PF05502.13 gi|320101285|ref|YP_004176877.1| - 4.4 6.0 8.1 3.2 6.4 7.2 1.3 1 1 0 1 1 1 0 Dynactin p62 family TF_Zn_Ribbon PF08271.12 gi|320101285|ref|YP_004176877.1| - 5.3 6.7 19.3 1.8 8.2 4.1 3.5 1 1 2 3 3 3 0 TFIIB zinc-binding zf-AN1 PF01428.16 gi|320101285|ref|YP_004176877.1| - 5.3 7.3 13.4 6.1 7.1 2.9 2.9 2 1 1 3 3 3 0 AN1-like Zinc finger zf_Rg PF17915.1 gi|320101285|ref|YP_004176877.1| - 6.1 6.3 15.9 0.61 9.5 1.7 3.1 2 1 1 3 3 3 0 Reverse gyrase zinc finger EF1_GNE PF00736.19 gi|320101286|ref|YP_004176878.1| - 1.7e-19 69.7 0.1 1.9e-19 69.6 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain TrkA_N PF02254.18 gi|320101287|ref|YP_004176879.1| - 4e-16 59.3 0.7 7.4e-16 58.5 0.4 1.6 1 1 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|320101287|ref|YP_004176879.1| - 6.4e-05 23.3 0.4 0.00026 21.4 0.1 1.9 1 1 1 2 2 2 1 Putative NAD(P)-binding TrkA_C PF02080.21 gi|320101287|ref|YP_004176879.1| - 0.0016 18.2 3.2 0.0018 18.1 0.5 2.3 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|320101287|ref|YP_004176879.1| - 0.044 14.4 0.1 0.5 11.0 0.0 2.6 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent DUF1624 PF07786.12 gi|320101288|ref|YP_004176880.1| - 0.0075 15.8 5.8 0.011 15.3 5.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Sarcolipin PF05366.11 gi|320101288|ref|YP_004176880.1| - 1.7 8.4 5.3 4.8 7.0 5.3 1.7 1 0 0 1 1 1 0 Sarcolipin Radical_SAM PF04055.21 gi|320101289|ref|YP_004176881.1| - 5e-23 82.3 0.2 4.4e-22 79.2 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|320101289|ref|YP_004176881.1| - 7.8e-22 77.2 0.0 1.7e-21 76.1 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|320101289|ref|YP_004176881.1| - 6.7e-06 26.0 0.0 1.8e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 TRAM domain Rep_fac-A_3 PF08661.11 gi|320101289|ref|YP_004176881.1| - 0.048 14.0 0.1 2.5 8.5 0.0 2.9 3 0 0 3 3 3 0 Replication factor A protein 3 eIF-5_eIF-2B PF01873.17 gi|320101290|ref|YP_004176882.1| - 1.5e-32 111.9 0.0 1.8e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Elf1 PF05129.13 gi|320101290|ref|YP_004176882.1| - 0.014 15.4 0.3 0.021 14.8 0.3 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like HypA PF01155.19 gi|320101290|ref|YP_004176882.1| - 0.022 14.8 0.4 0.034 14.2 0.4 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|320101290|ref|YP_004176882.1| - 0.027 13.9 0.4 2.6 7.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|320101290|ref|YP_004176882.1| - 0.041 13.9 0.3 0.069 13.1 0.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|320101290|ref|YP_004176882.1| - 0.049 13.6 1.5 0.087 12.8 1.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|320101290|ref|YP_004176882.1| - 0.065 13.4 1.1 0.2 11.8 1.1 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF678 PF05077.12 gi|320101290|ref|YP_004176882.1| - 0.087 13.0 1.7 7.7 6.7 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF678) Rubredoxin_2 PF18073.1 gi|320101290|ref|YP_004176882.1| - 0.19 11.5 1.9 10 6.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Lar_restr_allev PF14354.6 gi|320101290|ref|YP_004176882.1| - 0.21 12.0 0.7 8.3 6.9 0.0 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF35_N PF12172.8 gi|320101290|ref|YP_004176882.1| - 0.29 11.1 3.9 6 6.8 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNA_POL_M_15KD PF02150.16 gi|320101290|ref|YP_004176882.1| - 0.63 10.0 2.3 12 5.8 1.7 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|320101290|ref|YP_004176882.1| - 1.7 8.7 5.2 12 5.9 0.6 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF424 PF04242.13 gi|320101291|ref|YP_004176883.1| - 2.6e-21 75.7 0.0 3e-21 75.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.13 gi|320101292|ref|YP_004176884.1| - 2e-42 145.4 0.1 2.5e-42 145.1 0.1 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|320101292|ref|YP_004176884.1| - 0.029 14.4 3.3 0.47 10.5 1.9 2.6 2 1 0 2 2 2 0 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|320101292|ref|YP_004176884.1| - 0.037 13.7 6.6 0.045 13.4 0.1 2.7 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain CxC4 PF18717.1 gi|320101292|ref|YP_004176884.1| - 0.064 13.1 3.2 5.2 6.9 0.1 2.5 2 0 0 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases zinc_ribbon_2 PF13240.6 gi|320101292|ref|YP_004176884.1| - 0.29 10.9 4.7 9.6 6.1 0.0 2.8 3 0 0 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.8 gi|320101292|ref|YP_004176884.1| - 0.62 10.0 0.1 0.62 10.0 0.1 2.6 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|320101292|ref|YP_004176884.1| - 1.9 8.0 6.0 3.5 7.2 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain eIF-1a PF01176.19 gi|320101293|ref|YP_004176885.1| - 3.4e-17 62.0 0.2 4.4e-17 61.7 0.2 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.22 gi|320101294|ref|YP_004176886.1| - 1.7e-60 203.9 0.0 2.1e-60 203.5 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|320101294|ref|YP_004176886.1| - 9.8e-09 35.5 0.2 2.6e-05 24.3 0.0 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|320101294|ref|YP_004176886.1| - 0.00029 20.3 0.0 0.0044 16.4 0.0 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|320101294|ref|YP_004176886.1| - 0.0028 16.5 0.0 0.0042 15.9 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase Pkinase PF00069.25 gi|320101294|ref|YP_004176886.1| - 0.018 14.4 0.0 0.039 13.3 0.0 1.5 2 0 0 2 2 2 0 Protein kinase domain DUF3993 PF13158.6 gi|320101294|ref|YP_004176886.1| - 0.13 12.5 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3993) KH_1 PF00013.29 gi|320101295|ref|YP_004176887.1| - 1.8e-09 37.3 0.2 0.0011 18.8 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|320101295|ref|YP_004176887.1| - 0.0094 15.8 0.9 0.27 11.1 0.1 2.4 2 0 0 2 2 2 1 KH domain EamA PF00892.20 gi|320101296|ref|YP_004176888.1| - 2e-21 76.6 16.1 2.4e-21 76.4 16.1 1.0 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.16 gi|320101296|ref|YP_004176888.1| - 0.02 14.3 5.5 0.043 13.2 5.2 1.4 1 1 0 1 1 1 0 Triose-phosphate Transporter family AMP-binding PF00501.28 gi|320101296|ref|YP_004176888.1| - 0.052 12.1 0.7 0.073 11.7 0.7 1.2 1 0 0 1 1 1 0 AMP-binding enzyme CRT-like PF08627.10 gi|320101296|ref|YP_004176888.1| - 0.078 11.9 7.2 0.1 11.5 7.2 1.3 1 1 0 1 1 1 0 CRT-like, chloroquine-resistance transporter-like TMEM234 PF10639.9 gi|320101296|ref|YP_004176888.1| - 0.19 11.8 4.6 0.43 10.6 4.6 1.7 1 1 0 1 1 1 0 Putative transmembrane family 234 Peptidase_U4 PF03419.13 gi|320101296|ref|YP_004176888.1| - 2 7.6 11.4 2.7 7.2 11.4 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Pox_A14 PF05767.12 gi|320101296|ref|YP_004176888.1| - 6.3 7.0 10.0 1 9.6 0.5 2.4 2 1 0 2 2 2 0 Poxvirus virion envelope protein A14 TrkH PF02386.16 gi|320101297|ref|YP_004176889.1| - 1.2e-45 156.0 22.5 1.6e-25 89.6 8.8 2.1 1 1 1 2 2 2 2 Cation transport protein tRNA-synt_2c PF01411.19 gi|320101298|ref|YP_004176890.1| - 2.8e-92 310.0 0.0 3.4e-91 306.4 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|320101298|ref|YP_004176890.1| - 2.3e-12 46.8 0.1 5.1e-12 45.7 0.1 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|320101298|ref|YP_004176890.1| - 8.7e-05 21.9 0.0 0.00015 21.2 0.0 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit DHHA1 PF02272.19 gi|320101298|ref|YP_004176890.1| - 0.00015 22.2 0.5 0.00033 21.1 0.5 1.7 1 0 0 1 1 1 1 DHHA1 domain Laminin_I PF06008.14 gi|320101298|ref|YP_004176890.1| - 0.0072 16.1 0.1 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 Laminin Domain I Ribosomal_60s PF00428.19 gi|320101299|ref|YP_004176891.1| - 1.1e-16 61.2 17.0 1.3e-16 61.0 17.0 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|320101299|ref|YP_004176891.1| - 0.0079 16.2 7.0 0.5 10.4 0.1 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain Ribonuc_L-PSP PF01042.21 gi|320101299|ref|YP_004176891.1| - 0.022 14.8 0.6 0.028 14.4 0.6 1.2 1 0 0 1 1 1 0 Endoribonuclease L-PSP EF-hand_14 PF17959.1 gi|320101299|ref|YP_004176891.1| - 0.069 13.5 0.1 0.23 11.8 0.0 1.7 2 0 0 2 2 2 0 EF-hand domain Adenine_glyco PF03352.13 gi|320101299|ref|YP_004176891.1| - 0.19 11.5 0.4 0.24 11.2 0.4 1.1 1 0 0 1 1 1 0 Methyladenine glycosylase Ribosomal_L10 PF00466.20 gi|320101300|ref|YP_004176892.1| - 3.9e-20 71.9 2.5 6.4e-20 71.2 0.0 2.4 3 0 0 3 3 3 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|320101300|ref|YP_004176892.1| - 2.8e-16 59.3 0.1 1e-15 57.5 0.1 2.0 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Cytochrom_C552 PF02335.15 gi|320101300|ref|YP_004176892.1| - 0.5 9.2 1.7 0.7 8.7 1.7 1.1 1 0 0 1 1 1 0 Cytochrome c552 Ribosomal_L1 PF00687.21 gi|320101301|ref|YP_004176893.1| - 3.5e-37 128.1 0.0 4.2e-37 127.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.14 gi|320101302|ref|YP_004176894.1| - 2.4e-23 81.8 1.1 4.3e-23 80.9 1.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|320101302|ref|YP_004176894.1| - 1.3e-19 70.5 1.8 2.1e-19 69.8 1.8 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.13 gi|320101303|ref|YP_004176895.1| - 4.7e-17 61.6 0.6 6.9e-17 61.1 0.6 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|320101303|ref|YP_004176895.1| - 1.9e-08 33.9 0.3 2e-07 30.7 0.2 2.3 2 0 0 2 2 2 1 KOW motif NusG PF02357.19 gi|320101303|ref|YP_004176895.1| - 0.071 13.6 0.1 0.11 13.0 0.1 1.3 1 0 0 1 1 1 0 Transcription termination factor nusG SRP54 PF00448.22 gi|320101305|ref|YP_004176897.1| - 1.4e-68 230.4 0.0 2.7e-68 229.5 0.0 1.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|320101305|ref|YP_004176897.1| - 1.4e-06 28.5 1.9 1.4e-06 28.5 1.9 1.7 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|320101305|ref|YP_004176897.1| - 0.00016 21.7 0.0 0.00068 19.7 0.0 2.1 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|320101305|ref|YP_004176897.1| - 0.00041 20.1 0.1 0.00073 19.3 0.1 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|320101305|ref|YP_004176897.1| - 0.0026 16.8 1.6 0.061 12.3 1.6 2.3 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_31 PF13614.6 gi|320101305|ref|YP_004176897.1| - 0.0039 17.1 0.1 0.014 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|320101305|ref|YP_004176897.1| - 0.009 15.7 0.0 0.017 14.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|320101305|ref|YP_004176897.1| - 0.015 15.3 2.4 0.6 10.0 1.4 2.5 2 1 0 2 2 1 0 NTPase MMR_HSR1 PF01926.23 gi|320101305|ref|YP_004176897.1| - 0.019 15.0 1.1 0.096 12.8 0.4 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.19 gi|320101305|ref|YP_004176897.1| - 0.028 14.0 0.4 0.083 12.5 0.4 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|320101305|ref|YP_004176897.1| - 0.038 13.3 0.2 0.08 12.2 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin Arf PF00025.21 gi|320101305|ref|YP_004176897.1| - 0.045 13.2 0.2 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosylation factor family ArsA_ATPase PF02374.15 gi|320101305|ref|YP_004176897.1| - 0.046 12.9 0.7 0.14 11.3 0.1 2.0 2 1 0 2 2 2 0 Anion-transporting ATPase AAA_19 PF13245.6 gi|320101305|ref|YP_004176897.1| - 0.08 13.3 0.0 0.18 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|320101305|ref|YP_004176897.1| - 0.1 12.3 0.4 1.2 8.8 0.0 2.5 3 0 0 3 3 3 0 Thymidylate kinase AAA_28 PF13521.6 gi|320101305|ref|YP_004176897.1| - 0.15 12.3 0.3 0.3 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|320101305|ref|YP_004176897.1| - 0.16 11.7 1.1 1.1 9.0 0.1 2.4 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|320101305|ref|YP_004176897.1| - 0.19 12.2 0.9 0.49 10.8 0.1 2.1 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|320101305|ref|YP_004176897.1| - 0.22 11.8 0.3 26 5.1 0.1 3.0 3 0 0 3 3 3 0 AAA domain AAA_17 PF13207.6 gi|320101305|ref|YP_004176897.1| - 0.45 10.9 1.9 1 9.8 0.1 2.3 3 0 0 3 3 3 0 AAA domain Prefoldin PF02996.17 gi|320101306|ref|YP_004176898.1| - 9.6e-17 61.0 0.1 1.6e-16 60.3 0.0 1.4 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|320101306|ref|YP_004176898.1| - 8.2e-07 28.9 0.6 0.046 13.7 0.0 2.1 2 0 0 2 2 2 2 Prefoldin subunit EAP30 PF04157.16 gi|320101306|ref|YP_004176898.1| - 0.011 15.1 0.1 0.017 14.4 0.1 1.3 1 1 0 1 1 1 0 EAP30/Vps36 family TolA_bind_tri PF16331.5 gi|320101306|ref|YP_004176898.1| - 0.012 15.7 1.5 0.72 10.0 0.2 2.2 2 0 0 2 2 2 0 TolA binding protein trimerisation STAT_alpha PF01017.20 gi|320101306|ref|YP_004176898.1| - 0.016 15.1 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 STAT protein, all-alpha domain ZapB PF06005.12 gi|320101306|ref|YP_004176898.1| - 0.018 15.5 1.4 3.2 8.3 0.1 2.2 2 0 0 2 2 2 0 Cell division protein ZapB Gon7 PF08738.10 gi|320101306|ref|YP_004176898.1| - 0.04 14.0 0.7 0.073 13.2 0.2 1.6 2 0 0 2 2 2 0 Gon7 family Holin_BhlA PF10960.8 gi|320101306|ref|YP_004176898.1| - 0.041 13.8 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 BhlA holin family ADPrib_exo_Tox PF03496.14 gi|320101306|ref|YP_004176898.1| - 0.052 12.9 0.0 0.078 12.3 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme SpecificRecomb PF10136.9 gi|320101306|ref|YP_004176898.1| - 0.081 11.2 0.0 0.088 11.1 0.0 1.1 1 0 0 1 1 1 0 Site-specific recombinase FAM92 PF06730.11 gi|320101306|ref|YP_004176898.1| - 0.083 12.3 0.1 1.8 7.9 0.0 2.0 2 0 0 2 2 2 0 FAM92 protein phiKZ_IP PF12699.7 gi|320101306|ref|YP_004176898.1| - 0.09 11.9 0.2 5.3 6.1 0.0 2.0 2 0 0 2 2 2 0 phiKZ-like phage internal head proteins ADIP PF11559.8 gi|320101306|ref|YP_004176898.1| - 0.095 12.8 2.7 2.1 8.4 0.1 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding JIP_LZII PF16471.5 gi|320101306|ref|YP_004176898.1| - 0.22 11.7 3.8 5.6 7.2 0.2 2.2 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II Ribosomal_L18A PF01775.17 gi|320101307|ref|YP_004176899.1| - 4.5e-13 49.4 0.3 7e-13 48.7 0.3 1.3 1 1 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|320101308|ref|YP_004176900.1| - 5.6e-58 195.6 1.2 6.5e-58 195.4 1.2 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|320101309|ref|YP_004176901.1| - 1.5e-10 41.1 0.4 1.9e-10 40.8 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|320101310|ref|YP_004176902.1| - 1.3e-16 59.9 7.5 1.6e-16 59.7 7.5 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein DUF4224 PF13986.6 gi|320101310|ref|YP_004176902.1| - 0.062 13.2 0.3 0.072 13.0 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) dsDNA_bind PF01984.20 gi|320101311|ref|YP_004176903.1| - 5.7e-22 78.1 9.8 1.3e-21 76.9 9.8 1.5 1 1 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|320101311|ref|YP_004176903.1| - 0.00049 19.5 4.5 0.0006 19.2 4.5 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 LPD16 PF18830.1 gi|320101311|ref|YP_004176903.1| - 0.011 15.7 0.1 0.015 15.2 0.1 1.3 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 16 Ribosomal_S19e PF01090.19 gi|320101312|ref|YP_004176904.1| - 7.5e-51 171.4 0.0 8.6e-51 171.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|320101312|ref|YP_004176904.1| - 3e-05 23.9 1.5 0.00032 20.6 1.5 2.2 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain RuvB_C PF05491.13 gi|320101312|ref|YP_004176904.1| - 0.0019 18.0 0.1 0.011 15.6 0.1 2.1 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_IclR PF09339.10 gi|320101312|ref|YP_004176904.1| - 0.058 13.2 0.0 2 8.3 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain CRS1_YhbY PF01985.21 gi|320101313|ref|YP_004176905.1| - 1.6e-10 41.0 0.1 1.9e-10 40.8 0.1 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Cation_ATPase_N PF00690.26 gi|320101313|ref|YP_004176905.1| - 0.12 12.1 0.0 0.42 10.3 0.0 1.8 2 0 0 2 2 2 0 Cation transporter/ATPase, N-terminus Rpr2 PF04032.16 gi|320101314|ref|YP_004176906.1| - 3.4e-15 56.1 0.0 4.2e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Zn_ribbon_SprT PF17283.2 gi|320101314|ref|YP_004176906.1| - 0.07 13.1 4.5 4.4 7.3 0.2 2.5 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|320101314|ref|YP_004176906.1| - 0.087 12.9 0.1 0.13 12.4 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon EMG1 PF03587.14 gi|320101315|ref|YP_004176907.1| - 2.6e-51 174.0 0.0 3e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase NRDD PF13597.6 gi|320101316|ref|YP_004176908.1| - 1.3e-146 489.7 0.0 1.5e-146 489.5 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase TackOD1 PF18551.1 gi|320101316|ref|YP_004176908.1| - 0.0022 17.7 0.0 0.0037 17.0 0.0 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 HypA PF01155.19 gi|320101316|ref|YP_004176908.1| - 0.0034 17.4 0.1 0.0071 16.4 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L32p PF01783.23 gi|320101316|ref|YP_004176908.1| - 0.024 14.9 0.3 0.064 13.5 0.3 1.6 1 0 0 1 1 1 0 Ribosomal L32p protein family zf-ribbon_3 PF13248.6 gi|320101316|ref|YP_004176908.1| - 0.044 13.2 1.5 0.08 12.4 1.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|320101316|ref|YP_004176908.1| - 0.097 12.7 0.2 0.2 11.7 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.11 gi|320101316|ref|YP_004176908.1| - 0.1 12.7 0.6 0.23 11.6 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) GFP PF01353.22 gi|320101316|ref|YP_004176908.1| - 0.22 11.0 0.0 0.36 10.3 0.0 1.3 1 0 0 1 1 1 0 Green fluorescent protein Zn-ribbon_8 PF09723.10 gi|320101316|ref|YP_004176908.1| - 0.49 10.6 3.3 11 6.2 4.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|320101316|ref|YP_004176908.1| - 3.2 7.7 5.6 8.4 6.4 5.1 2.0 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF996 PF06195.13 gi|320101318|ref|YP_004176910.1| - 6.8e-11 42.6 0.4 6.8e-11 42.6 0.4 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF996) Radical_SAM PF04055.21 gi|320101319|ref|YP_004176911.1| - 3.6e-20 73.0 0.0 7.7e-20 71.9 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|320101319|ref|YP_004176911.1| - 1e-10 42.1 0.0 1.5e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|320101319|ref|YP_004176911.1| - 3.6e-07 30.3 0.0 5.9e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Thy1 PF02511.15 gi|320101320|ref|YP_004176912.1| - 7.4e-57 192.2 0.0 8.9e-57 191.9 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein DEAD PF00270.29 gi|320101321|ref|YP_004176913.1| - 9.2e-20 71.1 0.0 3.7e-19 69.2 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|320101321|ref|YP_004176913.1| - 4.8e-18 65.5 0.1 1.9e-17 63.6 0.1 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|320101321|ref|YP_004176913.1| - 1e-05 25.6 0.0 2.5e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|320101321|ref|YP_004176913.1| - 0.0085 15.8 0.0 0.026 14.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain FERM_N PF09379.10 gi|320101321|ref|YP_004176913.1| - 0.011 15.7 0.0 0.12 12.3 0.0 2.5 2 0 0 2 2 2 0 FERM N-terminal domain AAA_19 PF13245.6 gi|320101321|ref|YP_004176913.1| - 0.018 15.4 0.0 0.05 13.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain Flavi_DEAD PF07652.14 gi|320101321|ref|YP_004176913.1| - 0.039 13.9 0.0 7.1 6.6 0.0 2.5 2 0 0 2 2 2 0 Flavivirus DEAD domain DUF2244 PF10003.9 gi|320101322|ref|YP_004176914.1| - 0.071 12.8 3.6 0.12 12.1 3.6 1.4 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Kinocilin PF15033.6 gi|320101322|ref|YP_004176914.1| - 1.2 8.8 5.7 0.84 9.3 4.0 1.6 1 1 1 2 2 2 0 Kinocilin protein Resolvase PF00239.21 gi|320101323|ref|YP_004176915.1| - 4.1e-26 91.8 0.6 5.9e-26 91.3 0.6 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|320101323|ref|YP_004176915.1| - 2.8e-14 53.0 0.2 7.1e-14 51.7 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|320101323|ref|YP_004176915.1| - 5.4e-07 29.3 0.8 1.2e-06 28.2 0.4 1.8 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 gi|320101323|ref|YP_004176915.1| - 8.1e-06 25.8 0.1 2.1e-05 24.5 0.1 1.7 1 1 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|320101323|ref|YP_004176915.1| - 8e-05 22.3 0.1 0.00025 20.8 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|320101323|ref|YP_004176915.1| - 0.00033 20.7 0.1 0.0024 18.0 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|320101323|ref|YP_004176915.1| - 0.00088 19.3 0.0 0.002 18.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_1 PF01527.20 gi|320101323|ref|YP_004176915.1| - 0.0024 18.1 0.0 0.0054 17.0 0.0 1.6 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.6 gi|320101323|ref|YP_004176915.1| - 0.065 12.7 0.0 0.25 10.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_8 PF02954.19 gi|320101323|ref|YP_004176915.1| - 0.088 12.6 0.1 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family OrfB_Zn_ribbon PF07282.11 gi|320101324|ref|YP_004176916.1| - 3.7e-18 65.2 0.0 9e-18 64.0 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|320101324|ref|YP_004176916.1| - 0.042 14.0 1.2 0.089 13.0 1.2 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf_Rg PF17915.1 gi|320101324|ref|YP_004176916.1| - 0.092 12.2 1.4 0.2 11.1 1.4 1.5 1 0 0 1 1 1 0 Reverse gyrase zinc finger SpoU_sub_bind PF08032.12 gi|320101324|ref|YP_004176916.1| - 0.16 12.2 0.2 4.7 7.6 0.0 2.9 2 1 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding zinc_ribbon_9 PF14369.6 gi|320101324|ref|YP_004176916.1| - 0.58 10.5 2.6 0.91 9.8 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon ADH_N PF08240.12 gi|320101325|ref|YP_004176917.1| - 1.9e-35 121.1 2.5 3.4e-35 120.2 2.5 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|320101325|ref|YP_004176917.1| - 7.8e-07 30.2 0.2 1.7e-06 29.2 0.1 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|320101325|ref|YP_004176917.1| - 1.9e-06 27.8 0.0 1.5e-05 25.0 0.0 2.3 1 1 1 2 2 2 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|320101325|ref|YP_004176917.1| - 0.16 11.3 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BKACE PF05853.12 gi|320101325|ref|YP_004176917.1| - 0.2 10.9 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 beta-keto acid cleavage enzyme NADH_4Fe-4S PF10589.9 gi|320101325|ref|YP_004176917.1| - 0.53 10.4 3.8 0.47 10.6 1.1 2.1 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region dUTPase PF00692.19 gi|320101327|ref|YP_004176919.1| - 4.8e-16 58.6 0.0 7.4e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|320101327|ref|YP_004176919.1| - 0.0066 15.3 0.0 0.018 13.8 0.0 1.7 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) NTP_transferase PF00483.23 gi|320101328|ref|YP_004176920.1| - 4.3e-36 124.8 0.0 4.8e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|320101328|ref|YP_004176920.1| - 9.8e-13 48.8 0.0 2e-12 47.7 0.0 1.5 2 0 0 2 2 2 1 MobA-like NTP transferase domain IspD PF01128.19 gi|320101328|ref|YP_004176920.1| - 0.0025 17.6 0.0 0.0031 17.3 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Peptidase_M54 PF07998.11 gi|320101329|ref|YP_004176921.1| - 5.3e-30 104.9 0.0 5.6e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|320101329|ref|YP_004176921.1| - 3.5e-05 23.7 0.1 3.6e-05 23.7 0.1 1.4 1 1 0 1 1 1 1 Matrixin Metallopep PF12044.8 gi|320101329|ref|YP_004176921.1| - 0.15 10.6 0.2 0.22 10.1 0.2 1.2 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M43 PF05572.13 gi|320101329|ref|YP_004176921.1| - 0.15 11.9 0.1 0.23 11.4 0.1 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.6 gi|320101329|ref|YP_004176921.1| - 0.18 12.3 0.0 0.26 11.8 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|320101329|ref|YP_004176921.1| - 0.21 10.8 0.0 0.33 10.1 0.0 1.2 1 0 0 1 1 1 0 Met-zincin Reprolysin_4 PF13583.6 gi|320101329|ref|YP_004176921.1| - 0.26 10.9 0.0 0.37 10.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Archease PF01951.16 gi|320101330|ref|YP_004176922.1| - 1.2e-35 122.8 0.0 1.3e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RuBisCO_large PF00016.20 gi|320101331|ref|YP_004176923.1| - 4e-95 318.5 0.0 4.7e-95 318.2 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|320101331|ref|YP_004176923.1| - 9e-46 154.9 0.0 1.6e-45 154.2 0.0 1.4 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF697 PF05128.12 gi|320101331|ref|YP_004176923.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF697) Vps23_core PF09454.10 gi|320101331|ref|YP_004176923.1| - 0.15 12.0 0.0 0.58 10.1 0.0 2.0 2 0 0 2 2 2 0 Vps23 core domain LigA PF07746.11 gi|320101331|ref|YP_004176923.1| - 0.19 11.9 0.0 0.69 10.1 0.0 1.9 2 0 0 2 2 2 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Peptidase_S8 PF00082.22 gi|320101332|ref|YP_004176924.1| - 3e-52 177.8 8.0 3.8e-52 177.4 8.0 1.1 1 0 0 1 1 1 1 Subtilase family CspB_prodomain PF18425.1 gi|320101332|ref|YP_004176924.1| - 0.025 14.6 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 Csp protease B prodomain dTDP_sugar_isom PF00908.17 gi|320101333|ref|YP_004176925.1| - 1.1e-68 230.2 0.0 1.3e-68 230.0 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase RmlD_sub_bind PF04321.17 gi|320101334|ref|YP_004176926.1| - 1e-74 251.2 0.0 1.2e-74 251.1 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|320101334|ref|YP_004176926.1| - 1.9e-22 79.9 0.0 1.5e-21 76.9 0.0 1.9 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|320101334|ref|YP_004176926.1| - 4.1e-14 52.7 0.2 1.2e-13 51.2 0.2 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|320101334|ref|YP_004176926.1| - 6.6e-10 38.6 1.2 7.1e-09 35.2 0.4 2.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|320101334|ref|YP_004176926.1| - 1.2e-08 34.4 1.1 2e-06 27.2 0.0 2.9 1 1 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.19 gi|320101334|ref|YP_004176926.1| - 3.2e-06 26.4 0.0 5e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.13 gi|320101334|ref|YP_004176926.1| - 0.011 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family NAD_binding_10 PF13460.6 gi|320101334|ref|YP_004176926.1| - 0.011 15.6 0.0 0.018 14.9 0.0 1.5 1 1 0 1 1 1 0 NAD(P)H-binding DFP PF04127.15 gi|320101334|ref|YP_004176926.1| - 0.098 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein baeRF_family2 PF18844.1 gi|320101334|ref|YP_004176926.1| - 0.1 12.7 0.3 0.23 11.5 0.3 1.6 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 2 KR PF08659.10 gi|320101334|ref|YP_004176926.1| - 0.22 11.4 3.0 0.7 9.8 0.5 2.6 2 2 0 2 2 2 0 KR domain GDP_Man_Dehyd PF16363.5 gi|320101335|ref|YP_004176927.1| - 6.3e-73 246.1 0.0 1.5e-72 244.8 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|320101335|ref|YP_004176927.1| - 1.2e-64 218.1 0.0 1.4e-64 217.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|320101335|ref|YP_004176927.1| - 5.1e-18 65.2 0.0 5.6e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|320101335|ref|YP_004176927.1| - 3e-14 52.7 0.0 3.8e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|320101335|ref|YP_004176927.1| - 1e-12 47.8 0.0 2e-11 43.6 0.0 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|320101335|ref|YP_004176927.1| - 4.2e-11 42.5 0.0 2.1e-10 40.2 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|320101335|ref|YP_004176927.1| - 0.00011 22.4 0.0 0.00017 21.9 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|320101335|ref|YP_004176927.1| - 0.00093 18.8 0.0 0.007 15.9 0.0 1.9 2 0 0 2 2 2 1 NmrA-like family KR PF08659.10 gi|320101335|ref|YP_004176927.1| - 0.017 15.0 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 KR domain Semialdhyde_dh PF01118.24 gi|320101335|ref|YP_004176927.1| - 0.027 14.9 0.0 0.045 14.2 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.25 gi|320101335|ref|YP_004176927.1| - 0.04 13.4 0.0 6.1 6.2 0.0 2.2 2 0 0 2 2 2 0 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|320101335|ref|YP_004176927.1| - 0.042 13.7 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding NTP_transferase PF00483.23 gi|320101336|ref|YP_004176928.1| - 9.8e-44 149.8 0.0 1.2e-43 149.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|320101336|ref|YP_004176928.1| - 5.1e-10 39.9 0.0 6.6e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|320101336|ref|YP_004176928.1| - 0.0098 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Bactofilin PF04519.13 gi|320101336|ref|YP_004176928.1| - 0.019 15.3 0.3 0.035 14.4 0.3 1.5 1 0 0 1 1 1 0 Polymer-forming cytoskeletal Lyase_8_N PF08124.11 gi|320101336|ref|YP_004176928.1| - 0.048 12.6 0.0 0.072 12.0 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide lyase family 8, N terminal alpha-helical domain CTP_transf_3 PF02348.19 gi|320101336|ref|YP_004176928.1| - 0.11 12.4 0.1 0.32 10.9 0.0 1.7 2 0 0 2 2 2 0 Cytidylyltransferase PhoD PF09423.10 gi|320101336|ref|YP_004176928.1| - 0.24 10.4 0.0 0.34 9.9 0.0 1.1 1 0 0 1 1 1 0 PhoD-like phosphatase Glycos_transf_2 PF00535.26 gi|320101337|ref|YP_004176929.1| - 5.1e-19 68.7 0.0 9.5e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|320101337|ref|YP_004176929.1| - 8e-16 58.6 0.0 1.4e-14 54.5 0.0 2.1 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|320101337|ref|YP_004176929.1| - 9.6e-05 22.4 0.1 0.00016 21.6 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|320101337|ref|YP_004176929.1| - 0.0086 15.6 0.0 0.03 13.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 MTS PF05175.14 gi|320101338|ref|YP_004176930.1| - 3.6e-32 111.2 0.0 4e-32 111.1 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|320101338|ref|YP_004176930.1| - 5.9e-12 45.6 0.0 7e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|320101338|ref|YP_004176930.1| - 1.8e-09 37.5 0.0 3.4e-09 36.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|320101338|ref|YP_004176930.1| - 3e-08 33.7 0.0 5.4e-08 32.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|320101338|ref|YP_004176930.1| - 4.2e-08 33.2 0.0 4.8e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|320101338|ref|YP_004176930.1| - 1.4e-07 32.2 0.0 2.2e-07 31.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|320101338|ref|YP_004176930.1| - 1e-05 25.4 0.1 1.5e-05 24.8 0.1 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_12 PF08242.12 gi|320101338|ref|YP_004176930.1| - 2e-05 25.2 0.0 2.7e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|320101338|ref|YP_004176930.1| - 0.00042 20.9 0.0 0.0006 20.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|320101338|ref|YP_004176930.1| - 0.001 18.9 0.1 0.0013 18.6 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|320101338|ref|YP_004176930.1| - 0.0016 18.3 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|320101338|ref|YP_004176930.1| - 0.0029 17.2 0.0 0.0037 16.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|320101338|ref|YP_004176930.1| - 0.0056 16.4 0.0 0.01 15.6 0.0 1.3 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|320101338|ref|YP_004176930.1| - 0.0086 15.7 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 GidB PF02527.15 gi|320101338|ref|YP_004176930.1| - 0.031 13.6 0.1 0.063 12.6 0.1 1.5 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_2 PF00891.18 gi|320101338|ref|YP_004176930.1| - 0.036 13.4 0.0 0.056 12.7 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain Adeno_hexon PF01065.19 gi|320101338|ref|YP_004176930.1| - 0.12 11.2 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 Hexon, adenovirus major coat protein, N-terminal domain TRM PF02005.16 gi|320101338|ref|YP_004176930.1| - 0.15 11.2 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase KOW PF00467.29 gi|320101339|ref|YP_004176931.1| - 0.00011 22.0 1.4 0.00026 20.8 1.4 1.7 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.17 gi|320101339|ref|YP_004176931.1| - 0.0014 19.1 0.0 0.002 18.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 AAA_17 PF13207.6 gi|320101340|ref|YP_004176932.1| - 1e-16 61.6 0.0 1.3e-16 61.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|320101340|ref|YP_004176932.1| - 1.5e-16 61.0 0.1 4.4e-14 53.0 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|320101340|ref|YP_004176932.1| - 8.4e-13 49.0 0.0 1.4e-12 48.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|320101340|ref|YP_004176932.1| - 2.9e-08 33.7 0.4 2.4e-05 24.2 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|320101340|ref|YP_004176932.1| - 1.1e-06 28.8 0.0 1.9e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.6 gi|320101340|ref|YP_004176932.1| - 9.4e-06 26.0 0.0 4.4e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|320101340|ref|YP_004176932.1| - 3.1e-05 24.4 0.0 4.9e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|320101340|ref|YP_004176932.1| - 0.00039 20.6 0.1 0.00088 19.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|320101340|ref|YP_004176932.1| - 0.00051 19.8 0.1 0.12 12.1 0.0 2.3 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|320101340|ref|YP_004176932.1| - 0.017 15.1 0.0 0.032 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|320101340|ref|YP_004176932.1| - 0.022 15.1 0.0 0.042 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain SKI PF01202.22 gi|320101340|ref|YP_004176932.1| - 0.031 14.4 0.0 0.73 9.9 0.0 2.1 2 0 0 2 2 2 0 Shikimate kinase NTPase_1 PF03266.15 gi|320101340|ref|YP_004176932.1| - 0.04 13.8 0.0 0.089 12.7 0.0 1.6 1 1 0 1 1 1 0 NTPase AAA_24 PF13479.6 gi|320101340|ref|YP_004176932.1| - 0.044 13.5 0.1 0.077 12.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|320101340|ref|YP_004176932.1| - 0.052 12.9 0.0 0.094 12.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|320101340|ref|YP_004176932.1| - 0.057 13.8 0.0 0.071 13.5 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.10 gi|320101340|ref|YP_004176932.1| - 0.064 12.7 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Hydin_ADK PF17213.3 gi|320101340|ref|YP_004176932.1| - 0.072 13.4 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain Thymidylate_kin PF02223.17 gi|320101340|ref|YP_004176932.1| - 0.082 12.6 0.0 0.56 9.9 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase dNK PF01712.19 gi|320101340|ref|YP_004176932.1| - 0.091 12.6 0.0 0.36 10.7 0.0 1.9 2 1 0 2 2 2 0 Deoxynucleoside kinase TsaE PF02367.17 gi|320101340|ref|YP_004176932.1| - 0.1 12.6 0.1 0.86 9.6 0.0 2.2 2 1 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE EFG_II PF14492.6 gi|320101340|ref|YP_004176932.1| - 0.15 12.2 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 Elongation Factor G, domain II Ribosomal_L34e PF01199.18 gi|320101341|ref|YP_004176933.1| - 1e-27 96.3 0.7 1.1e-27 96.2 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e zf-C4_ClpX PF06689.13 gi|320101341|ref|YP_004176933.1| - 0.0058 16.5 0.0 1.1 9.2 0.0 2.2 2 0 0 2 2 2 2 ClpX C4-type zinc finger DUF4428 PF14471.6 gi|320101341|ref|YP_004176933.1| - 0.025 14.5 1.3 3.5 7.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) DUF3270 PF11674.8 gi|320101342|ref|YP_004176934.1| - 0.00055 20.1 1.9 0.00085 19.5 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3270) S_4TM PF18159.1 gi|320101342|ref|YP_004176934.1| - 0.061 12.6 0.2 0.061 12.6 0.2 1.7 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain DUF3087 PF11286.8 gi|320101342|ref|YP_004176934.1| - 0.19 11.2 2.9 0.99 8.9 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3087) SecY PF00344.20 gi|320101343|ref|YP_004176935.1| - 2.6e-59 201.0 17.3 3.6e-59 200.5 17.3 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|320101343|ref|YP_004176935.1| - 6.2e-11 41.9 0.3 6.2e-11 41.9 0.3 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|320101344|ref|YP_004176936.1| - 2.3e-18 67.1 0.3 4.2e-18 66.3 0.3 1.4 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|320101344|ref|YP_004176936.1| - 0.00016 21.1 0.1 0.00025 20.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L30 PF00327.20 gi|320101345|ref|YP_004176937.1| - 8.6e-12 44.8 0.0 1.6e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.15 gi|320101346|ref|YP_004176938.1| - 2.1e-23 81.6 0.3 4.7e-23 80.4 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|320101346|ref|YP_004176938.1| - 4.8e-22 77.7 1.3 4.8e-22 77.7 1.3 2.1 3 0 0 3 3 3 1 Ribosomal protein S5, N-terminal domain Ribosomal_L5e PF17144.4 gi|320101347|ref|YP_004176939.1| - 6.9e-30 104.2 1.2 3.8e-22 79.0 0.5 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|320101347|ref|YP_004176939.1| - 2.7e-06 27.7 0.0 1.2e-05 25.7 0.0 1.8 2 0 0 2 2 2 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L18_c PF14204.6 gi|320101347|ref|YP_004176939.1| - 5.2e-05 24.1 0.0 0.0001 23.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.20 gi|320101348|ref|YP_004176940.1| - 1e-52 178.1 5.8 1.1e-52 177.9 5.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e S4 PF01479.25 gi|320101348|ref|YP_004176940.1| - 0.009 15.7 0.7 0.099 12.4 0.0 2.8 2 1 1 3 3 3 1 S4 domain GcpE PF04551.14 gi|320101348|ref|YP_004176940.1| - 0.14 11.2 0.0 0.18 10.9 0.0 1.1 1 0 0 1 1 1 0 GcpE protein Ribosomal_L32e PF01655.18 gi|320101349|ref|YP_004176941.1| - 1.4e-31 109.1 0.0 1.7e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 DUF5499 PF17603.2 gi|320101349|ref|YP_004176941.1| - 0.071 13.7 0.1 0.28 11.8 0.1 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5499) Ribosomal_L6 PF00347.23 gi|320101350|ref|YP_004176942.1| - 3e-27 95.1 11.6 1e-17 64.6 2.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Oxygenase-NA PF09859.9 gi|320101350|ref|YP_004176942.1| - 0.013 15.1 0.1 0.019 14.5 0.1 1.3 1 0 0 1 1 1 0 Oxygenase, catalysing oxidative methylation of damaged DNA DUF1521 PF07481.11 gi|320101350|ref|YP_004176942.1| - 0.044 13.8 0.9 0.23 11.5 0.4 2.3 2 1 0 2 2 2 0 Domain of Unknown Function (DUF1521) Ribosomal_S8 PF00410.19 gi|320101351|ref|YP_004176943.1| - 2.4e-26 92.2 0.0 3e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|320101352|ref|YP_004176944.1| - 1.2e-12 47.4 1.6 1.4e-12 47.1 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|320101352|ref|YP_004176944.1| - 0.0072 16.2 2.1 0.012 15.5 2.1 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Prim_Zn_Ribbon PF08273.12 gi|320101352|ref|YP_004176944.1| - 0.008 16.4 4.1 0.051 13.9 0.8 2.1 1 1 1 2 2 2 1 Zinc-binding domain of primase-helicase Zn_Tnp_IS91 PF14319.6 gi|320101352|ref|YP_004176944.1| - 0.015 15.3 0.4 0.016 15.2 0.4 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn_Tnp_IS1595 PF12760.7 gi|320101352|ref|YP_004176944.1| - 0.016 15.2 2.4 0.02 14.9 2.4 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|320101352|ref|YP_004176944.1| - 0.016 15.3 0.8 0.018 15.1 0.8 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family DZR PF12773.7 gi|320101352|ref|YP_004176944.1| - 0.025 14.6 0.2 0.03 14.3 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-P11 PF03854.14 gi|320101352|ref|YP_004176944.1| - 0.048 13.3 0.2 0.064 12.9 0.2 1.2 1 0 0 1 1 1 0 P-11 zinc finger DUF1451 PF07295.11 gi|320101352|ref|YP_004176944.1| - 0.049 13.7 0.2 0.051 13.6 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF2039 PF10217.9 gi|320101352|ref|YP_004176944.1| - 0.12 12.7 2.4 0.17 12.3 2.5 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) zf-CCHC_2 PF13696.6 gi|320101352|ref|YP_004176944.1| - 5 7.0 8.3 2.4 8.1 0.3 2.5 3 0 0 3 3 3 0 Zinc knuckle Ribosomal_L5_C PF00673.21 gi|320101353|ref|YP_004176945.1| - 6.5e-24 83.9 0.0 1.3e-23 82.9 0.0 1.5 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|320101353|ref|YP_004176945.1| - 4.8e-19 68.4 0.1 9.4e-19 67.5 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|320101354|ref|YP_004176946.1| - 3.1e-22 78.3 0.0 4.9e-22 77.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|320101354|ref|YP_004176946.1| - 1.4e-16 60.3 0.7 2.4e-16 59.6 0.7 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|320101354|ref|YP_004176946.1| - 8.2e-15 54.3 1.3 1.6e-14 53.4 0.1 2.1 2 0 0 2 2 2 1 S4 domain 40S_S4_C PF16121.5 gi|320101354|ref|YP_004176946.1| - 0.00044 19.8 0.0 0.00082 19.0 0.0 1.5 1 0 0 1 1 1 1 40S ribosomal protein S4 C-terminus KOW PF00467.29 gi|320101354|ref|YP_004176946.1| - 0.025 14.5 2.8 0.025 14.5 2.8 2.1 2 0 0 2 2 2 0 KOW motif Ribosomal_L26 PF16906.5 gi|320101355|ref|YP_004176947.1| - 1.1e-29 102.7 0.3 1.4e-29 102.4 0.3 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|320101355|ref|YP_004176947.1| - 1.1e-10 41.0 2.0 2.5e-10 39.9 2.0 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.19 gi|320101356|ref|YP_004176948.1| - 3.5e-37 127.2 0.0 4.5e-37 126.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|320101357|ref|YP_004176949.1| - 1.8e-27 95.3 4.0 2.3e-27 94.9 4.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|320101357|ref|YP_004176949.1| - 0.038 14.4 0.8 0.057 13.8 0.1 1.7 2 0 0 2 2 2 0 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|320101358|ref|YP_004176950.1| - 1.1e-17 63.7 0.0 1.3e-17 63.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|320101359|ref|YP_004176951.1| - 2e-20 72.5 6.8 2.5e-20 72.2 6.8 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.20 gi|320101360|ref|YP_004176952.1| - 1.1e-22 80.3 0.8 1.8e-22 79.6 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|320101360|ref|YP_004176952.1| - 2.2e-13 49.8 0.0 4.3e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|320101360|ref|YP_004176952.1| - 0.0018 18.1 0.4 0.0044 16.8 0.1 1.9 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|320101360|ref|YP_004176952.1| - 0.0038 17.1 0.1 0.013 15.3 0.0 2.0 2 0 0 2 2 2 1 KH domain Ribosomal_L22 PF00237.19 gi|320101361|ref|YP_004176953.1| - 9.2e-28 96.5 0.1 1.1e-27 96.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|320101362|ref|YP_004176954.1| - 2.4e-34 117.0 0.3 3.2e-34 116.7 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 gi|320101362|ref|YP_004176954.1| - 0.013 16.1 0.6 0.022 15.3 0.6 1.4 1 0 0 1 1 1 0 bZIP Maf transcription factor DUF913 PF06025.12 gi|320101362|ref|YP_004176954.1| - 0.041 12.9 0.0 0.041 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) VWA_CoxE PF05762.14 gi|320101363|ref|YP_004176955.1| - 2.5e-12 46.7 0.3 4.8e-12 45.7 0.3 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|320101363|ref|YP_004176955.1| - 2.2e-05 25.0 0.1 0.0001 22.9 0.1 2.0 1 1 0 1 1 1 1 von Willebrand factor type A domain CoA_binding_2 PF13380.6 gi|320101363|ref|YP_004176955.1| - 0.017 15.6 0.1 0.043 14.3 0.1 1.7 1 0 0 1 1 1 0 CoA binding domain PALP PF00291.25 gi|320101363|ref|YP_004176955.1| - 0.17 11.3 0.0 0.3 10.5 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme AAA_5 PF07728.14 gi|320101364|ref|YP_004176956.1| - 4.6e-15 55.8 0.0 7.4e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|320101364|ref|YP_004176956.1| - 4.7e-05 23.3 0.0 0.00035 20.4 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|320101364|ref|YP_004176956.1| - 0.0041 16.9 0.0 0.056 13.2 0.0 2.1 1 1 1 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|320101364|ref|YP_004176956.1| - 0.0059 16.3 0.0 2.9 7.6 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA PF00004.29 gi|320101364|ref|YP_004176956.1| - 0.012 16.0 0.1 0.062 13.7 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) vWA-TerF-like PF10138.9 gi|320101364|ref|YP_004176956.1| - 0.043 13.9 0.0 0.07 13.2 0.0 1.3 1 0 0 1 1 1 0 vWA found in TerF C terminus AAA_19 PF13245.6 gi|320101364|ref|YP_004176956.1| - 0.051 13.9 0.0 1.2 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|320101364|ref|YP_004176956.1| - 0.069 12.5 0.0 4.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|320101364|ref|YP_004176956.1| - 0.082 12.6 0.0 1 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|320101364|ref|YP_004176956.1| - 0.083 13.4 0.0 0.37 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|320101364|ref|YP_004176956.1| - 0.1 12.1 0.0 0.36 10.3 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region Ribosomal_L2_C PF03947.18 gi|320101365|ref|YP_004176957.1| - 3e-43 147.0 2.7 5e-43 146.3 2.7 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|320101365|ref|YP_004176957.1| - 4.5e-11 42.6 0.0 1.2e-10 41.2 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|320101366|ref|YP_004176958.1| - 7.2e-19 67.9 3.9 4.7e-18 65.3 3.9 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 ASL_C PF08328.11 gi|320101366|ref|YP_004176958.1| - 0.027 14.6 0.1 0.031 14.4 0.1 1.1 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal FliJ PF02050.16 gi|320101366|ref|YP_004176958.1| - 0.14 12.4 0.0 0.15 12.3 0.0 1.0 1 0 0 1 1 1 0 Flagellar FliJ protein Ribosomal_L4 PF00573.22 gi|320101367|ref|YP_004176959.1| - 3.2e-35 121.6 0.0 3.8e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Cm_res_leader PF08077.11 gi|320101367|ref|YP_004176959.1| - 0.062 13.4 0.2 0.75 10.1 0.1 2.9 2 0 0 2 2 2 0 Chloramphenicol resistance gene leader peptide Ribosomal_L3 PF00297.22 gi|320101368|ref|YP_004176960.1| - 2.4e-64 217.6 3.7 5.7e-44 150.6 0.0 3.0 2 1 0 2 2 2 2 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|320101369|ref|YP_004176961.1| - 2.3e-34 119.2 0.0 5.1e-34 118.1 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methyltransferase Peptidase_M60_C PF18630.1 gi|320101369|ref|YP_004176961.1| - 0.0072 16.4 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase M60 C-terminal domain PAPS_reduct PF01507.19 gi|320101370|ref|YP_004176962.1| - 2.4e-45 154.7 0.0 1.3e-44 152.3 0.0 1.9 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|320101370|ref|YP_004176962.1| - 0.15 11.6 0.9 0.68 9.4 0.0 2.1 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DEAD PF00270.29 gi|320101371|ref|YP_004176963.1| - 4.7e-28 98.1 0.0 4e-26 91.9 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|320101371|ref|YP_004176963.1| - 5.7e-21 74.9 0.0 1.6e-19 70.3 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|320101371|ref|YP_004176963.1| - 9.3e-09 35.4 0.0 2.5e-08 33.9 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated ResIII PF04851.15 gi|320101371|ref|YP_004176963.1| - 1.3e-05 25.3 0.0 4e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|320101371|ref|YP_004176963.1| - 0.0013 19.1 0.0 0.0039 17.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain HypA PF01155.19 gi|320101371|ref|YP_004176963.1| - 0.016 15.2 0.0 0.05 13.6 0.0 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA T2SSE PF00437.20 gi|320101371|ref|YP_004176963.1| - 0.056 12.5 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein zinc_ribbon_10 PF10058.9 gi|320101371|ref|YP_004176963.1| - 0.11 12.2 0.3 0.33 10.7 0.3 1.7 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein AAA_22 PF13401.6 gi|320101371|ref|YP_004176963.1| - 0.15 12.4 0.1 20 5.5 0.0 3.3 3 0 0 3 3 3 0 AAA domain Hus1 PF04005.12 gi|320101375|ref|YP_004176967.1| - 5.1e-07 29.1 0.0 1e-05 24.8 0.0 2.0 1 1 1 2 2 2 1 Hus1-like protein PCNA_N PF00705.18 gi|320101375|ref|YP_004176967.1| - 1.1e-06 28.4 0.0 2.7e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|320101375|ref|YP_004176967.1| - 3.5e-06 27.2 0.0 0.0022 18.1 0.0 2.9 3 0 0 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain POR PF01558.18 gi|320101376|ref|YP_004176968.1| - 1e-38 133.2 0.6 1.2e-38 132.9 0.6 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|320101377|ref|YP_004176969.1| - 4.1e-17 61.2 17.4 8.1e-10 38.1 6.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|320101377|ref|YP_004176969.1| - 2.1e-11 44.2 25.4 3.2e-09 37.3 13.8 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|320101377|ref|YP_004176969.1| - 3.3e-11 42.7 17.3 1.2e-05 25.1 5.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|320101377|ref|YP_004176969.1| - 4.7e-10 39.4 10.2 6e-10 39.1 10.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|320101377|ref|YP_004176969.1| - 5.8e-10 39.1 22.1 1.2e-06 28.5 12.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|320101377|ref|YP_004176969.1| - 2.3e-09 38.1 9.3 2.3e-05 25.2 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|320101377|ref|YP_004176969.1| - 5.5e-08 32.5 14.6 0.0002 21.2 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|320101377|ref|YP_004176969.1| - 9.1e-08 32.0 16.5 0.00099 19.4 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|320101377|ref|YP_004176969.1| - 1.1e-07 31.9 11.2 1.6e-07 31.4 11.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|320101377|ref|YP_004176969.1| - 1.1e-06 28.9 6.3 0.011 16.2 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|320101377|ref|YP_004176969.1| - 8.5e-06 26.2 6.8 0.018 15.6 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|320101377|ref|YP_004176969.1| - 0.002 18.9 19.5 0.11 13.5 7.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|320101377|ref|YP_004176969.1| - 0.11 13.2 17.0 0.25 12.1 3.6 3.4 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|320101377|ref|YP_004176969.1| - 0.12 13.0 13.0 0.55 10.8 2.4 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|320101377|ref|YP_004176969.1| - 0.56 11.1 13.3 0.33 11.8 2.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|320101377|ref|YP_004176969.1| - 2 8.6 11.7 17 5.6 11.7 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|320101378|ref|YP_004176970.1| - 7.2e-68 228.8 1.2 9e-68 228.5 1.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|320101378|ref|YP_004176970.1| - 1.3e-24 86.4 0.0 2.8e-24 85.4 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|320101378|ref|YP_004176970.1| - 0.017 15.0 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|320101379|ref|YP_004176971.1| - 1.5e-25 89.8 0.3 2.1e-25 89.3 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|320101379|ref|YP_004176971.1| - 0.0014 17.9 0.1 0.002 17.4 0.1 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Sec61_beta PF03911.16 gi|320101380|ref|YP_004176972.1| - 9.4e-14 51.2 0.9 1.1e-13 51.0 0.9 1.1 1 0 0 1 1 1 1 Sec61beta family MazG PF03819.17 gi|320101381|ref|YP_004176973.1| - 1.1e-11 44.8 0.3 1.6e-11 44.2 0.3 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|320101381|ref|YP_004176973.1| - 0.0012 19.3 0.5 0.0013 19.1 0.5 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.7 gi|320101381|ref|YP_004176973.1| - 0.0024 18.1 0.0 0.0037 17.5 0.0 1.2 1 0 0 1 1 1 1 MazG-like family PG_binding_1 PF01471.18 gi|320101381|ref|YP_004176973.1| - 0.053 13.7 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain PcrB PF01884.17 gi|320101382|ref|YP_004176974.1| - 2.9e-47 161.0 0.0 3.6e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|320101382|ref|YP_004176974.1| - 1.7e-05 24.4 0.0 2.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein G3P_antiterm PF04309.12 gi|320101382|ref|YP_004176974.1| - 0.055 12.9 0.1 0.1 12.0 0.1 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|320101382|ref|YP_004176974.1| - 0.11 11.5 0.1 0.23 10.4 0.1 1.6 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Elf1 PF05129.13 gi|320101383|ref|YP_004176975.1| - 3.5e-20 71.8 0.2 4.7e-20 71.4 0.2 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.12 gi|320101383|ref|YP_004176975.1| - 0.0014 18.1 2.2 0.011 15.2 2.2 2.2 1 1 0 1 1 1 1 TFIIB zinc-binding Ribosomal_L32p PF01783.23 gi|320101383|ref|YP_004176975.1| - 0.0014 18.9 3.0 0.0045 17.2 0.2 2.1 1 1 1 2 2 2 1 Ribosomal L32p protein family zf-ribbon_3 PF13248.6 gi|320101383|ref|YP_004176975.1| - 0.01 15.2 2.0 0.24 10.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|320101383|ref|YP_004176975.1| - 0.022 15.2 0.1 0.041 14.3 0.1 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar FdhE PF04216.12 gi|320101383|ref|YP_004176975.1| - 0.025 14.5 0.2 0.037 13.9 0.2 1.3 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Zn_Tnp_IS1595 PF12760.7 gi|320101383|ref|YP_004176975.1| - 0.042 13.8 1.2 0.13 12.3 1.3 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1610 PF07754.11 gi|320101383|ref|YP_004176975.1| - 0.12 12.3 1.1 0.12 12.3 1.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-C2H2_3 PF13878.6 gi|320101383|ref|YP_004176975.1| - 0.13 12.1 0.9 1.9 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_4 PF13717.6 gi|320101383|ref|YP_004176975.1| - 0.15 12.0 1.2 13 5.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|320101383|ref|YP_004176975.1| - 0.15 12.3 1.1 0.58 10.5 1.1 1.7 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain zf-RING_7 PF02591.15 gi|320101383|ref|YP_004176975.1| - 0.19 12.0 2.9 1.3 9.2 0.4 2.4 1 1 1 2 2 2 0 C4-type zinc ribbon domain Rubredoxin PF00301.20 gi|320101383|ref|YP_004176975.1| - 0.29 11.2 2.4 0.97 9.5 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin zinc_ribbon_2 PF13240.6 gi|320101383|ref|YP_004176975.1| - 0.42 10.4 3.5 2.2 8.1 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|320101383|ref|YP_004176975.1| - 0.43 10.7 2.9 1.5 9.0 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.7 gi|320101383|ref|YP_004176975.1| - 1.4 9.4 5.7 9.3 6.7 0.0 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 SWIM PF04434.17 gi|320101384|ref|YP_004176976.1| - 0.0025 17.5 0.0 0.0046 16.6 0.0 1.5 1 0 0 1 1 1 1 SWIM zinc finger IF-2B PF01008.17 gi|320101385|ref|YP_004176977.1| - 1.5e-79 267.2 0.0 1.7e-79 267.0 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family tRNA_int_endo PF01974.17 gi|320101386|ref|YP_004176978.1| - 9e-10 38.5 0.1 1.4e-09 37.8 0.1 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|320101386|ref|YP_004176978.1| - 4.6e-05 23.0 0.0 0.00011 21.8 0.0 1.7 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|320101386|ref|YP_004176978.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Sen15 protein tRNA-synt_His PF13393.6 gi|320101387|ref|YP_004176979.1| - 1.7e-47 162.2 0.1 2.1e-47 161.9 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|320101387|ref|YP_004176979.1| - 8.9e-12 45.3 0.0 2.2e-11 44.0 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|320101387|ref|YP_004176979.1| - 1.3e-06 28.5 0.0 2.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.20 gi|320101387|ref|YP_004176979.1| - 0.0036 16.8 0.0 0.012 15.1 0.0 1.9 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|320101387|ref|YP_004176979.1| - 0.049 12.7 2.3 0.57 9.2 1.3 2.6 3 1 0 3 3 3 0 tRNA synthetases class II (D, K and N) Soyouz_module PF14313.6 gi|320101387|ref|YP_004176979.1| - 0.2 11.5 0.0 0.42 10.4 0.0 1.5 1 0 0 1 1 1 0 N-terminal region of Paramyxovirinae phosphoprotein (P) RtcB PF01139.17 gi|320101388|ref|YP_004176980.1| - 4.8e-165 549.7 0.0 5.4e-165 549.5 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Topo-VIb_trans PF09239.11 gi|320101389|ref|YP_004176981.1| - 1.2e-61 207.2 0.0 2e-61 206.4 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c_3 PF13589.6 gi|320101389|ref|YP_004176981.1| - 3.7e-12 46.2 0.0 6.4e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|320101389|ref|YP_004176981.1| - 7.6e-12 45.7 0.0 1.8e-11 44.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|320101389|ref|YP_004176981.1| - 0.00022 20.1 0.2 0.00091 18.1 0.0 1.8 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.22 gi|320101389|ref|YP_004176981.1| - 0.014 15.8 0.0 0.045 14.2 0.0 1.8 1 0 0 1 1 1 0 Ribosomal protein S13/S18 DUF3585 PF12130.8 gi|320101389|ref|YP_004176981.1| - 0.037 14.2 0.2 0.066 13.4 0.2 1.3 1 0 0 1 1 1 0 Bivalent Mical/EHBP Rab binding domain Sec23_helical PF04815.15 gi|320101389|ref|YP_004176981.1| - 0.11 12.3 0.0 0.36 10.7 0.0 1.8 2 0 0 2 2 2 0 Sec23/Sec24 helical domain TP6A_N PF04406.14 gi|320101390|ref|YP_004176982.1| - 2.8e-22 78.5 0.2 4.9e-22 77.7 0.2 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|320101390|ref|YP_004176982.1| - 0.0049 16.8 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) Vac_Fusion PF02346.16 gi|320101390|ref|YP_004176982.1| - 0.084 12.5 0.1 0.25 11.0 0.1 1.7 1 0 0 1 1 1 0 Chordopoxvirus multifunctional envelope protein A27 5-FTHF_cyc-lig PF01812.20 gi|320101391|ref|YP_004176983.1| - 1.1e-29 103.6 0.0 1.3e-29 103.3 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family ASCH PF04266.14 gi|320101393|ref|YP_004176985.1| - 4.9e-14 52.8 0.0 7.5e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 ASCH domain Ogr_Delta PF04606.12 gi|320101394|ref|YP_004176986.1| - 0.0014 18.6 0.2 0.0016 18.3 0.2 1.1 1 0 0 1 1 1 1 Ogr/Delta-like zinc finger NOB1_Zn_bind PF08772.11 gi|320101394|ref|YP_004176986.1| - 0.0047 17.1 1.1 0.0072 16.5 1.1 1.4 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-LITAF-like PF10601.9 gi|320101394|ref|YP_004176986.1| - 0.0078 16.5 2.4 0.017 15.4 2.4 1.5 1 1 0 1 1 1 1 LITAF-like zinc ribbon domain Ribosomal_L37e PF01907.19 gi|320101394|ref|YP_004176986.1| - 0.018 15.2 2.8 0.05 13.8 0.2 2.1 2 0 0 2 2 2 0 Ribosomal protein L37e Zn-ribbon_8 PF09723.10 gi|320101394|ref|YP_004176986.1| - 0.019 15.1 0.7 0.04 14.0 0.7 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|320101394|ref|YP_004176986.1| - 0.021 14.5 1.6 3.8 7.2 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|320101394|ref|YP_004176986.1| - 0.023 14.3 1.8 0.28 10.9 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|320101394|ref|YP_004176986.1| - 0.028 14.4 0.1 0.035 14.1 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|320101394|ref|YP_004176986.1| - 0.029 13.8 1.5 0.28 10.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain RL PF17797.1 gi|320101394|ref|YP_004176986.1| - 0.06 13.3 0.0 0.064 13.2 0.0 1.1 1 0 0 1 1 1 0 RL domain zinc_ribbon_2 PF13240.6 gi|320101394|ref|YP_004176986.1| - 0.87 9.4 6.6 1.5 8.6 1.7 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|320101394|ref|YP_004176986.1| - 1 9.3 5.6 4.9 7.1 0.8 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) tRNA-Thr_ED PF08915.11 gi|320101395|ref|YP_004176987.1| - 1.7e-47 160.9 0.0 7e-47 158.9 0.0 1.9 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|320101395|ref|YP_004176987.1| - 2.3e-25 88.5 0.2 6.1e-25 87.2 0.2 1.8 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|320101395|ref|YP_004176987.1| - 2e-14 53.9 0.3 5e-14 52.7 0.2 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Rad51 PF08423.11 gi|320101396|ref|YP_004176988.1| - 2.7e-96 321.7 0.0 3.4e-96 321.4 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|320101396|ref|YP_004176988.1| - 7.3e-18 65.0 0.0 9.6e-18 64.6 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|320101396|ref|YP_004176988.1| - 5.1e-11 42.4 0.0 8e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|320101396|ref|YP_004176988.1| - 1.1e-09 38.2 0.0 4e-09 36.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain HHH_5 PF14520.6 gi|320101396|ref|YP_004176988.1| - 0.00044 20.8 0.1 0.0015 19.1 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain Sigma70_r3 PF04539.16 gi|320101396|ref|YP_004176988.1| - 0.002 18.2 0.2 0.087 12.9 0.1 2.5 2 0 0 2 2 2 1 Sigma-70 region 3 HTH_31 PF13560.6 gi|320101396|ref|YP_004176988.1| - 0.0026 18.0 0.3 0.26 11.7 0.0 3.2 3 1 0 3 3 3 1 Helix-turn-helix domain AAA_24 PF13479.6 gi|320101396|ref|YP_004176988.1| - 0.014 15.2 0.0 0.035 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain IMS_HHH PF11798.8 gi|320101396|ref|YP_004176988.1| - 0.029 14.7 0.0 0.12 12.8 0.0 2.1 2 0 0 2 2 1 0 IMS family HHH motif Cdd1 PF11731.8 gi|320101396|ref|YP_004176988.1| - 0.054 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus AAA_18 PF13238.6 gi|320101396|ref|YP_004176988.1| - 0.056 14.0 0.0 0.15 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain HTH_3 PF01381.22 gi|320101396|ref|YP_004176988.1| - 0.058 13.5 0.1 28 4.9 0.0 3.7 3 1 0 3 3 3 0 Helix-turn-helix AAA_22 PF13401.6 gi|320101396|ref|YP_004176988.1| - 0.093 13.0 0.0 0.2 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|320101396|ref|YP_004176988.1| - 0.11 13.0 0.0 0.38 11.3 0.0 1.8 1 1 1 2 2 2 0 ABC transporter IF2_N PF04760.15 gi|320101396|ref|YP_004176988.1| - 0.12 12.2 0.0 0.83 9.5 0.0 2.3 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region LPD22 PF18834.1 gi|320101396|ref|YP_004176988.1| - 0.16 12.2 0.1 16 5.8 0.1 2.4 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 ABC_tran PF00005.27 gi|320101397|ref|YP_004176989.1| - 7.8e-24 84.7 0.0 1.1e-23 84.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320101397|ref|YP_004176989.1| - 2.9e-15 56.9 0.0 6.3e-10 39.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320101397|ref|YP_004176989.1| - 1.7e-09 37.5 0.1 0.0004 19.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|320101397|ref|YP_004176989.1| - 0.00014 21.6 0.0 0.00027 20.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|320101397|ref|YP_004176989.1| - 0.00056 19.7 0.0 0.015 15.1 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_15 PF13175.6 gi|320101397|ref|YP_004176989.1| - 0.00066 19.5 0.0 0.36 10.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|320101397|ref|YP_004176989.1| - 0.0016 18.8 0.1 0.0042 17.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|320101397|ref|YP_004176989.1| - 0.0076 16.2 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|320101397|ref|YP_004176989.1| - 0.011 15.5 0.2 0.091 12.5 0.0 2.1 2 1 1 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|320101397|ref|YP_004176989.1| - 0.014 15.9 0.0 0.022 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|320101397|ref|YP_004176989.1| - 0.02 15.2 0.1 0.036 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|320101397|ref|YP_004176989.1| - 0.02 15.1 0.1 0.045 13.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|320101397|ref|YP_004176989.1| - 0.023 14.6 0.0 0.045 13.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|320101397|ref|YP_004176989.1| - 0.033 14.1 0.0 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase T2SSE PF00437.20 gi|320101397|ref|YP_004176989.1| - 0.038 13.1 0.0 0.056 12.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PhoH PF02562.16 gi|320101397|ref|YP_004176989.1| - 0.044 13.2 0.1 0.26 10.7 0.0 2.0 1 1 2 3 3 3 0 PhoH-like protein AAA_27 PF13514.6 gi|320101397|ref|YP_004176989.1| - 0.047 13.3 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|320101397|ref|YP_004176989.1| - 0.056 12.6 0.4 0.14 11.4 0.0 1.7 2 1 1 3 3 3 0 NB-ARC domain AAA_25 PF13481.6 gi|320101397|ref|YP_004176989.1| - 0.064 12.8 0.0 0.46 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|320101397|ref|YP_004176989.1| - 0.085 11.6 0.1 0.19 10.5 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein cobW PF02492.19 gi|320101397|ref|YP_004176989.1| - 0.094 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DLIC PF05783.11 gi|320101397|ref|YP_004176989.1| - 0.13 11.1 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_14 PF13173.6 gi|320101397|ref|YP_004176989.1| - 0.14 12.1 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|320101397|ref|YP_004176989.1| - 0.23 11.5 0.3 0.62 10.2 0.2 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC2_membrane_3 PF12698.7 gi|320101398|ref|YP_004176990.1| - 0.00063 19.0 10.6 0.00089 18.5 10.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF543 PF04418.12 gi|320101398|ref|YP_004176990.1| - 0.026 14.5 1.6 0.94 9.5 1.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF543) UreF PF01730.16 gi|320101398|ref|YP_004176990.1| - 0.31 11.6 3.7 0.2 12.2 1.5 1.8 1 1 1 2 2 2 0 UreF UPF0182 PF03699.13 gi|320101398|ref|YP_004176990.1| - 1.5 6.9 3.7 1.8 6.6 3.7 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) Arc_PepC_II PF06847.11 gi|320101399|ref|YP_004176991.1| - 1.1e-20 73.9 0.1 1.1e-20 73.9 0.1 1.6 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|320101399|ref|YP_004176991.1| - 5e-07 30.1 5.6 5e-07 30.1 5.6 1.8 2 1 0 2 2 2 1 Type IV leader peptidase family HIT PF01230.23 gi|320101400|ref|YP_004176992.1| - 2.8e-13 50.4 0.1 3.9e-13 49.9 0.1 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|320101400|ref|YP_004176992.1| - 1.6e-07 31.8 0.0 2.4e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|320101400|ref|YP_004176992.1| - 3.6e-06 26.8 0.1 5.8e-06 26.2 0.1 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Ribosomal_L24e PF01246.20 gi|320101403|ref|YP_004176995.1| - 0.0011 19.1 0.1 0.0017 18.5 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L24e FYVE PF01363.21 gi|320101403|ref|YP_004176995.1| - 0.0027 17.8 0.1 0.0028 17.7 0.1 1.2 1 0 0 1 1 1 1 FYVE zinc finger zf-C2H2_6 PF13912.6 gi|320101403|ref|YP_004176995.1| - 0.039 14.0 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger DUF2208 PF09973.9 gi|320101404|ref|YP_004176996.1| - 6.2e-63 212.5 9.3 7e-63 212.3 9.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF3784 PF12650.7 gi|320101404|ref|YP_004176996.1| - 0.82 9.9 9.7 11 6.3 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3784) Pex24p PF06398.11 gi|320101404|ref|YP_004176996.1| - 1.3 7.9 5.9 2.4 7.0 5.8 1.4 1 1 0 1 1 1 0 Integral peroxisomal membrane peroxin DUF72 PF01904.18 gi|320101406|ref|YP_004176998.1| - 7.2e-31 108.0 0.0 9.4e-31 107.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|320101406|ref|YP_004176998.1| - 0.21 11.0 0.0 0.9 8.9 0.0 2.1 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel ACT_4 PF13291.6 gi|320101407|ref|YP_004176999.1| - 1.7e-05 25.3 0.1 3.9e-05 24.2 0.0 1.6 2 0 0 2 2 2 1 ACT domain MazE_antitoxin PF04014.18 gi|320101407|ref|YP_004176999.1| - 2.4e-05 24.1 0.4 5e-05 23.1 0.1 1.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin ACT PF01842.25 gi|320101407|ref|YP_004176999.1| - 7.2e-05 22.5 0.0 0.00015 21.4 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|320101407|ref|YP_004176999.1| - 0.0012 18.7 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 ACT domain MraZ PF02381.18 gi|320101407|ref|YP_004176999.1| - 0.04 13.9 0.0 0.07 13.1 0.0 1.4 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like Pribosyltran PF00156.27 gi|320101408|ref|YP_004177000.1| - 6.1e-09 35.6 0.1 1.2e-08 34.6 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|320101408|ref|YP_004177000.1| - 0.017 15.1 0.1 0.051 13.6 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix ERCC3_RAD25_C PF16203.5 gi|320101410|ref|YP_004177002.1| - 9.7e-27 93.7 0.0 1.9e-26 92.8 0.0 1.4 1 1 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|320101410|ref|YP_004177002.1| - 2.9e-20 73.0 0.0 7.4e-20 71.6 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|320101410|ref|YP_004177002.1| - 1e-19 70.9 0.1 3.1e-19 69.3 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|320101410|ref|YP_004177002.1| - 9.3e-07 28.8 0.0 3.6e-06 26.9 0.0 2.0 1 1 0 1 1 1 1 DEAD/DEAH box helicase IstB_IS21 PF01695.17 gi|320101410|ref|YP_004177002.1| - 0.047 13.4 0.0 0.3 10.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|320101410|ref|YP_004177002.1| - 0.082 13.2 0.1 0.71 10.2 0.1 2.6 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|320101410|ref|YP_004177002.1| - 0.24 11.2 0.7 15 5.3 0.0 2.8 2 1 1 3 3 3 0 AAA domain Alba PF01918.21 gi|320101412|ref|YP_004177004.1| - 8.7e-21 73.5 1.2 1.2e-20 73.1 1.2 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|320101412|ref|YP_004177004.1| - 0.033 14.1 0.3 0.047 13.6 0.2 1.5 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Topoisom_bac PF01131.20 gi|320101413|ref|YP_004177005.1| - 2.8e-67 227.6 0.0 7.4e-67 226.1 0.0 1.7 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|320101413|ref|YP_004177005.1| - 2.8e-22 78.9 0.0 8.2e-22 77.4 0.0 1.9 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|320101413|ref|YP_004177005.1| - 2.9e-12 46.7 0.0 8.8e-12 45.1 0.0 1.8 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|320101413|ref|YP_004177005.1| - 5.3e-06 26.5 0.0 1.2e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|320101413|ref|YP_004177005.1| - 0.00042 20.6 0.0 0.039 14.3 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain AAA_30 PF13604.6 gi|320101413|ref|YP_004177005.1| - 0.00068 19.4 0.0 0.0034 17.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain Toprim_4 PF13662.6 gi|320101413|ref|YP_004177005.1| - 0.00081 19.8 0.2 0.0044 17.4 0.0 2.4 2 0 0 2 2 2 1 Toprim domain AAA_25 PF13481.6 gi|320101413|ref|YP_004177005.1| - 0.0013 18.4 0.1 0.032 13.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|320101413|ref|YP_004177005.1| - 0.0016 18.2 0.2 0.0041 16.9 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein DZR PF12773.7 gi|320101413|ref|YP_004177005.1| - 0.0064 16.5 5.0 0.52 10.4 0.7 2.3 2 0 0 2 2 2 2 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|320101413|ref|YP_004177005.1| - 0.018 15.0 0.7 8.9 6.4 0.0 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf_Rg PF17915.1 gi|320101413|ref|YP_004177005.1| - 0.02 14.3 2.0 0.025 14.0 0.3 1.9 2 0 0 2 2 2 0 Reverse gyrase zinc finger AAA_22 PF13401.6 gi|320101413|ref|YP_004177005.1| - 0.034 14.4 0.1 0.12 12.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|320101413|ref|YP_004177005.1| - 0.037 14.4 0.0 0.087 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain HypA PF01155.19 gi|320101413|ref|YP_004177005.1| - 0.043 13.8 3.8 0.95 9.5 0.6 2.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|320101413|ref|YP_004177005.1| - 0.1 12.6 2.0 0.66 10.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbons Flavi_DEAD PF07652.14 gi|320101413|ref|YP_004177005.1| - 0.19 11.7 0.0 0.38 10.7 0.0 1.4 1 0 0 1 1 1 0 Flavivirus DEAD domain AAA_19 PF13245.6 gi|320101413|ref|YP_004177005.1| - 0.2 12.0 0.1 0.45 10.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain Zn_Tnp_IS1595 PF12760.7 gi|320101413|ref|YP_004177005.1| - 1.5 8.8 7.1 4.1 7.5 0.6 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|320101413|ref|YP_004177005.1| - 3.1 8.0 9.7 0.67 10.1 1.8 2.7 2 1 0 2 2 2 0 Zinc ribbon domain RecR PF02132.15 gi|320101413|ref|YP_004177005.1| - 4.9 6.8 6.3 0.68 9.5 0.6 2.3 2 0 0 2 2 2 0 RecR protein Alba PF01918.21 gi|320101414|ref|YP_004177006.1| - 6.4e-08 32.3 0.3 8.3e-08 31.9 0.1 1.4 2 0 0 2 2 2 1 Alba Ribo_biogen_C PF04034.13 gi|320101415|ref|YP_004177007.1| - 2.5e-37 127.4 0.0 3e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal AsnC_trans_reg PF01037.21 gi|320101416|ref|YP_004177008.1| - 2.7e-15 56.1 0.8 3e-15 55.9 0.8 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|320101416|ref|YP_004177008.1| - 0.061 13.3 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 GYD domain HMA PF00403.26 gi|320101416|ref|YP_004177008.1| - 0.063 13.7 0.6 0.1 13.1 0.6 1.3 1 0 0 1 1 1 0 Heavy-metal-associated domain tRNA-synt_1b PF00579.25 gi|320101417|ref|YP_004177009.1| - 5.5e-49 167.1 0.0 1.1e-47 162.8 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF2309 PF10070.9 gi|320101417|ref|YP_004177009.1| - 0.16 10.2 0.0 0.26 9.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2309) Lactamase_B_2 PF12706.7 gi|320101418|ref|YP_004177010.1| - 9.4e-25 87.3 0.2 1.3e-24 86.8 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|320101418|ref|YP_004177010.1| - 1.1e-24 87.2 0.1 1.4e-24 86.8 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|320101418|ref|YP_004177010.1| - 1.3e-11 44.9 3.5 1.9e-11 44.3 3.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.24 gi|320101419|ref|YP_004177011.1| - 3.2e-40 138.1 0.0 3.9e-40 137.8 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF1512 PF07431.12 gi|320101420|ref|YP_004177012.1| - 7.2e-148 492.3 7.3 8.1e-148 492.2 7.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) TF_Zn_Ribbon PF08271.12 gi|320101421|ref|YP_004177013.1| - 0.00064 19.2 0.8 0.58 9.7 0.1 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|320101421|ref|YP_004177013.1| - 0.0014 18.7 0.2 0.0025 17.9 0.2 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|320101421|ref|YP_004177013.1| - 0.0056 16.7 0.1 0.0071 16.3 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|320101421|ref|YP_004177013.1| - 0.0077 16.1 1.5 0.12 12.4 0.0 2.4 3 0 0 3 3 3 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|320101421|ref|YP_004177013.1| - 0.0078 16.1 0.6 2.2 8.3 0.0 2.3 2 0 0 2 2 2 1 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|320101421|ref|YP_004177013.1| - 0.02 14.9 0.8 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF2089 PF09862.9 gi|320101421|ref|YP_004177013.1| - 0.024 14.7 0.0 0.59 10.2 0.0 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2089) zf-IS66 PF13005.7 gi|320101421|ref|YP_004177013.1| - 0.071 13.5 2.2 1.9 8.9 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Lar_restr_allev PF14354.6 gi|320101421|ref|YP_004177013.1| - 0.08 13.3 0.1 4.8 7.6 0.1 2.1 2 0 0 2 2 2 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.13 gi|320101421|ref|YP_004177013.1| - 0.099 12.3 3.0 0.44 10.3 0.3 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit YhfH PF14149.6 gi|320101421|ref|YP_004177013.1| - 0.13 12.2 2.8 5.6 7.0 0.0 2.2 2 0 0 2 2 2 0 YhfH-like protein DUF1451 PF07295.11 gi|320101421|ref|YP_004177013.1| - 0.14 12.2 0.9 4.5 7.3 0.1 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain TFIIS_C PF01096.18 gi|320101421|ref|YP_004177013.1| - 0.15 11.9 2.7 6.7 6.7 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2HE PF16278.5 gi|320101421|ref|YP_004177013.1| - 0.16 12.4 0.1 0.3 11.6 0.0 1.6 2 0 0 2 2 2 0 C2HE / C2H2 / C2HC zinc-binding finger zf-NADH-PPase PF09297.11 gi|320101421|ref|YP_004177013.1| - 0.17 11.6 4.0 1.3 8.7 1.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|320101421|ref|YP_004177013.1| - 0.38 10.5 7.2 2.5 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|320101421|ref|YP_004177013.1| - 0.44 10.0 6.4 4.7 6.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|320101421|ref|YP_004177013.1| - 0.48 10.6 5.0 7.9 6.7 1.3 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-tcix PF14952.6 gi|320101421|ref|YP_004177013.1| - 0.48 10.1 5.5 10 5.8 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_4 PF13717.6 gi|320101421|ref|YP_004177013.1| - 0.58 10.1 4.4 5.3 7.1 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain DUF1610 PF07754.11 gi|320101421|ref|YP_004177013.1| - 0.69 9.9 6.3 6.6 6.8 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RNA_POL_M_15KD PF02150.16 gi|320101421|ref|YP_004177013.1| - 3.6 7.5 6.0 1.8 8.5 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF1805 PF08827.11 gi|320101422|ref|YP_004177014.1| - 9e-17 61.2 1.6 9e-17 61.2 1.6 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1805) PK PF00224.21 gi|320101423|ref|YP_004177015.1| - 6.7e-83 278.4 0.0 8.1e-83 278.2 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|320101423|ref|YP_004177015.1| - 2.8e-09 37.2 0.1 4.4e-08 33.4 0.0 2.8 4 0 0 4 4 4 1 Pyruvate kinase, alpha/beta domain HTH_Tnp_1 PF01527.20 gi|320101423|ref|YP_004177015.1| - 2.8 8.3 4.1 4.6 7.6 0.2 2.6 2 0 0 2 2 2 0 Transposase TIM PF00121.18 gi|320101424|ref|YP_004177016.1| - 1.9e-15 56.9 0.0 1.7e-14 53.8 0.0 1.9 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|320101424|ref|YP_004177016.1| - 1.2e-06 28.0 0.9 1.6e-06 27.6 0.9 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|320101424|ref|YP_004177016.1| - 0.00029 20.1 0.1 0.00043 19.5 0.1 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|320101424|ref|YP_004177016.1| - 0.011 14.8 0.7 0.03 13.4 0.2 1.8 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DHO_dh PF01180.21 gi|320101424|ref|YP_004177016.1| - 0.016 14.4 0.2 0.02 14.1 0.2 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|320101424|ref|YP_004177016.1| - 0.021 14.3 0.2 0.14 11.5 0.1 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein B12-binding PF02310.19 gi|320101424|ref|YP_004177016.1| - 0.069 13.2 0.2 0.74 9.9 0.1 2.2 2 0 0 2 2 2 0 B12 binding domain CutC PF03932.14 gi|320101424|ref|YP_004177016.1| - 0.081 12.4 0.2 0.12 11.8 0.2 1.3 1 0 0 1 1 1 0 CutC family FBPase_3 PF01950.16 gi|320101425|ref|YP_004177017.1| - 4.1e-185 615.1 0.0 4.8e-185 614.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase ABC_tran PF00005.27 gi|320101426|ref|YP_004177018.1| - 1.2e-39 136.0 0.0 7.5e-21 75.1 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|320101426|ref|YP_004177018.1| - 2.4e-14 53.9 7.4 0.0038 17.1 0.0 4.2 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320101426|ref|YP_004177018.1| - 2.4e-12 46.8 2.1 0.00013 21.5 0.2 3.8 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|320101426|ref|YP_004177018.1| - 1.3e-11 44.1 4.5 2.7e-11 43.1 4.5 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|320101426|ref|YP_004177018.1| - 2.2e-08 33.6 9.7 2.9e-08 33.2 4.5 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|320101426|ref|YP_004177018.1| - 4.3e-07 29.7 13.4 1.3e-05 25.0 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_16 PF13191.6 gi|320101426|ref|YP_004177018.1| - 8.4e-07 29.5 0.0 0.046 14.1 0.0 3.0 2 2 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|320101426|ref|YP_004177018.1| - 9.4e-07 29.2 0.4 0.036 14.3 0.0 3.1 3 1 0 3 3 3 2 AAA domain Fer4_10 PF13237.6 gi|320101426|ref|YP_004177018.1| - 2.5e-06 27.5 19.5 6.8e-05 22.9 1.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|320101426|ref|YP_004177018.1| - 2.8e-05 24.2 7.4 5.4e-05 23.2 7.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_33 PF13671.6 gi|320101426|ref|YP_004177018.1| - 3.6e-05 24.0 0.2 0.33 11.1 0.0 4.1 3 1 0 3 3 3 1 AAA domain Fer4_7 PF12838.7 gi|320101426|ref|YP_004177018.1| - 3.7e-05 24.2 5.2 7.9e-05 23.2 5.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|320101426|ref|YP_004177018.1| - 6.1e-05 23.0 0.0 0.86 9.5 0.0 3.3 3 0 0 3 3 3 2 RsgA GTPase AAA_18 PF13238.6 gi|320101426|ref|YP_004177018.1| - 0.00012 22.6 0.0 0.29 11.7 0.0 2.9 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|320101426|ref|YP_004177018.1| - 0.00013 22.0 0.0 0.21 11.5 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain Fer4_2 PF12797.7 gi|320101426|ref|YP_004177018.1| - 0.00013 21.8 1.8 0.00013 21.8 1.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA PF00004.29 gi|320101426|ref|YP_004177018.1| - 0.00037 20.9 0.1 0.86 10.0 0.0 3.2 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Fer4_9 PF13187.6 gi|320101426|ref|YP_004177018.1| - 0.00042 20.4 7.2 0.00083 19.5 7.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_15 PF13175.6 gi|320101426|ref|YP_004177018.1| - 0.00074 19.3 0.2 1.9 8.1 0.0 3.1 3 0 0 3 3 3 1 AAA ATPase domain AAA_30 PF13604.6 gi|320101426|ref|YP_004177018.1| - 0.00087 19.1 0.2 0.38 10.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|320101426|ref|YP_004177018.1| - 0.001 19.2 0.1 1.6 9.0 0.0 3.3 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|320101426|ref|YP_004177018.1| - 0.0012 19.4 1.6 0.3 11.6 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|320101426|ref|YP_004177018.1| - 0.0013 18.5 0.4 1.4 8.7 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|320101426|ref|YP_004177018.1| - 0.0016 18.4 0.1 0.24 11.4 0.0 3.6 4 0 0 4 4 4 1 AAA domain AAA_24 PF13479.6 gi|320101426|ref|YP_004177018.1| - 0.0038 17.0 0.2 0.17 11.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|320101426|ref|YP_004177018.1| - 0.011 16.1 0.0 5.8 7.3 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Thymidylate_kin PF02223.17 gi|320101426|ref|YP_004177018.1| - 0.013 15.2 0.0 6.5 6.4 0.0 3.1 3 0 0 3 3 3 0 Thymidylate kinase SRP54 PF00448.22 gi|320101426|ref|YP_004177018.1| - 0.013 15.1 0.2 5.8 6.5 0.1 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.23 gi|320101426|ref|YP_004177018.1| - 0.015 15.4 2.1 1.9 8.6 0.3 2.9 3 0 0 3 3 3 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|320101426|ref|YP_004177018.1| - 0.016 14.4 0.0 1.4 8.1 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain KAP_NTPase PF07693.14 gi|320101426|ref|YP_004177018.1| - 0.022 14.0 0.0 1.6 7.9 0.0 2.3 2 0 0 2 2 2 0 KAP family P-loop domain DUF359 PF04019.12 gi|320101426|ref|YP_004177018.1| - 0.022 14.4 0.7 0.26 10.9 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF359) AAA_28 PF13521.6 gi|320101426|ref|YP_004177018.1| - 0.023 14.9 0.3 5.3 7.3 0.1 3.1 2 2 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|320101426|ref|YP_004177018.1| - 0.026 13.2 0.0 0.46 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain Fer4_16 PF13484.6 gi|320101426|ref|YP_004177018.1| - 0.031 15.2 7.6 0.076 14.0 2.4 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain ATP_bind_1 PF03029.17 gi|320101426|ref|YP_004177018.1| - 0.042 13.6 0.3 7.1 6.3 0.0 3.5 4 0 0 4 4 4 0 Conserved hypothetical ATP binding protein Fer4_4 PF12800.7 gi|320101426|ref|YP_004177018.1| - 0.052 14.1 1.7 0.052 14.1 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF87 PF01935.17 gi|320101426|ref|YP_004177018.1| - 0.057 13.5 1.1 13 5.8 0.0 2.6 2 0 0 2 2 2 0 Helicase HerA, central domain TsaE PF02367.17 gi|320101426|ref|YP_004177018.1| - 0.066 13.2 0.0 17 5.4 0.0 2.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|320101426|ref|YP_004177018.1| - 0.085 12.8 0.5 1.6 8.7 0.0 2.5 2 0 0 2 2 2 0 NACHT domain MeaB PF03308.16 gi|320101426|ref|YP_004177018.1| - 0.09 11.7 0.3 3.1 6.7 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_17 PF13534.6 gi|320101426|ref|YP_004177018.1| - 0.15 12.7 6.7 0.078 13.5 1.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain dNK PF01712.19 gi|320101426|ref|YP_004177018.1| - 0.16 11.8 0.1 8.5 6.2 0.0 2.3 2 0 0 2 2 2 0 Deoxynucleoside kinase cobW PF02492.19 gi|320101426|ref|YP_004177018.1| - 0.21 11.2 0.4 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Fer4_8 PF13183.6 gi|320101426|ref|YP_004177018.1| - 0.78 10.2 7.6 0.097 13.1 1.7 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|320101426|ref|YP_004177018.1| - 0.82 10.4 6.1 0.13 13.0 1.4 2.2 2 0 0 2 2 1 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|320101426|ref|YP_004177018.1| - 2 9.6 15.2 0.33 12.0 4.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain RNA_POL_M_15KD PF02150.16 gi|320101427|ref|YP_004177019.1| - 6.9e-06 25.8 0.4 1.4e-05 24.8 0.4 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|320101427|ref|YP_004177019.1| - 1.4e-05 24.6 1.1 5e-05 22.9 1.1 1.8 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.6 gi|320101427|ref|YP_004177019.1| - 0.00059 19.1 2.1 0.0011 18.2 2.1 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|320101427|ref|YP_004177019.1| - 0.00076 19.1 3.5 0.12 12.2 0.7 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|320101427|ref|YP_004177019.1| - 0.00089 19.1 1.5 0.083 12.8 0.1 2.4 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS DZR PF12773.7 gi|320101427|ref|YP_004177019.1| - 0.00093 19.2 0.5 0.0016 18.4 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|320101427|ref|YP_004177019.1| - 0.0042 17.0 3.0 0.036 14.0 3.3 2.2 1 1 1 2 2 2 1 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|320101427|ref|YP_004177019.1| - 0.0043 16.9 1.0 0.0086 16.0 0.6 1.7 1 1 1 2 2 2 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|320101427|ref|YP_004177019.1| - 0.0051 17.2 1.4 0.0083 16.5 1.4 1.6 1 1 0 1 1 1 1 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.16 gi|320101427|ref|YP_004177019.1| - 0.011 15.7 2.6 0.011 15.7 2.6 1.9 2 0 0 2 2 1 0 NAD-dependent DNA ligase C4 zinc finger domain Sigma70_r4 PF04545.16 gi|320101427|ref|YP_004177019.1| - 0.026 14.0 2.1 0.04 13.4 2.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Zn_Tnp_IS1595 PF12760.7 gi|320101427|ref|YP_004177019.1| - 0.026 14.5 0.4 0.047 13.7 0.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RuvA_N PF01330.21 gi|320101427|ref|YP_004177019.1| - 0.033 14.3 0.1 0.7 10.0 0.1 2.2 1 1 0 1 1 1 0 RuvA N terminal domain eIF-5_eIF-2B PF01873.17 gi|320101427|ref|YP_004177019.1| - 0.036 13.9 0.8 0.091 12.6 0.2 1.8 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zf-IS66 PF13005.7 gi|320101427|ref|YP_004177019.1| - 0.04 14.3 3.0 0.77 10.2 2.9 2.5 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 DUF2387 PF09526.10 gi|320101427|ref|YP_004177019.1| - 0.05 13.8 0.5 0.096 12.8 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF3945 PF13101.6 gi|320101427|ref|YP_004177019.1| - 0.072 12.8 0.2 0.1 12.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) PriA_CRR PF18319.1 gi|320101427|ref|YP_004177019.1| - 0.096 12.7 0.6 1.2 9.2 0.6 2.1 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain zf-C4_Topoisom PF01396.19 gi|320101427|ref|YP_004177019.1| - 0.13 12.1 3.4 0.57 10.0 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|320101427|ref|YP_004177019.1| - 0.13 11.7 3.9 1.2 8.7 0.8 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zn-ribbon_14 PF16503.5 gi|320101427|ref|YP_004177019.1| - 0.41 10.2 5.8 1.5 8.4 0.2 3.0 3 0 0 3 3 3 0 Zinc-ribbon Mu-like_Com PF10122.9 gi|320101427|ref|YP_004177019.1| - 0.43 10.1 6.2 1.2 8.7 0.1 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com UPF0547 PF10571.9 gi|320101427|ref|YP_004177019.1| - 0.66 10.1 4.0 14 5.9 0.9 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.19 gi|320101427|ref|YP_004177019.1| - 0.69 10.0 3.5 4.9 7.2 0.2 2.7 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|320101427|ref|YP_004177019.1| - 0.8 9.9 3.4 1.2 9.4 3.4 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|320101427|ref|YP_004177019.1| - 1.3 9.2 4.6 8.1 6.7 0.4 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|320101427|ref|YP_004177019.1| - 2 8.8 4.5 15 6.0 1.1 2.5 1 1 1 2 2 2 0 zinc-ribbon DUF2688 PF10892.8 gi|320101427|ref|YP_004177019.1| - 2.4 7.7 5.8 17 4.9 0.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2688) Ribosomal_S17e PF00833.18 gi|320101429|ref|YP_004177021.1| - 5.5e-19 68.3 1.2 6.1e-19 68.1 1.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 Sld5 PF05916.11 gi|320101429|ref|YP_004177021.1| - 0.085 13.3 0.1 0.09 13.2 0.1 1.2 1 0 0 1 1 1 0 GINS complex protein MarR_2 PF12802.7 gi|320101430|ref|YP_004177022.1| - 0.0054 16.6 0.1 0.33 10.9 0.1 2.3 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|320101430|ref|YP_004177022.1| - 0.046 13.6 0.0 0.43 10.5 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Peptidase_C92 PF05708.12 gi|320101431|ref|YP_004177023.1| - 8.6e-29 100.8 0.0 1.5e-28 100.0 0.0 1.4 1 1 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family NLPC_P60 PF00877.19 gi|320101431|ref|YP_004177023.1| - 0.021 14.9 0.1 1.8 8.6 0.3 2.2 2 0 0 2 2 2 0 NlpC/P60 family RNA_pol_RpbG PF16992.5 gi|320101432|ref|YP_004177024.1| - 2.3e-16 59.9 0.0 2.7e-16 59.7 0.0 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G Lsm_C PF14894.6 gi|320101433|ref|YP_004177025.1| - 1.7e-27 94.9 0.7 8.9e-27 92.7 0.4 2.1 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.22 gi|320101433|ref|YP_004177025.1| - 7.2e-08 32.0 0.1 1.2e-07 31.3 0.1 1.4 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|320101433|ref|YP_004177025.1| - 6.6e-05 23.0 0.0 0.00012 22.2 0.0 1.4 1 0 0 1 1 1 1 Ataxin 2 SM domain TGT PF01702.18 gi|320101434|ref|YP_004177026.1| - 8.3e-62 209.4 0.0 1.1e-61 209.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|320101434|ref|YP_004177026.1| - 4.3e-07 29.9 0.1 9.7e-07 28.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PAC2 PF09754.9 gi|320101435|ref|YP_004177027.1| - 2.6e-33 115.9 0.0 3.2e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 PAC2 family TGT_C2 PF14810.6 gi|320101436|ref|YP_004177028.1| - 4.3e-17 62.0 0.0 8e-17 61.1 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|320101436|ref|YP_004177028.1| - 8e-16 57.8 0.2 1.4e-15 57.0 0.2 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|320101436|ref|YP_004177028.1| - 0.0042 17.3 0.0 0.0068 16.6 0.0 1.4 1 0 0 1 1 1 1 UPF0113 PUA domain AdoHcyase PF05221.17 gi|320101437|ref|YP_004177029.1| - 9.9e-72 241.6 0.0 7.2e-42 143.6 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|320101437|ref|YP_004177029.1| - 3.3e-53 180.1 0.0 4.9e-53 179.5 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|320101437|ref|YP_004177029.1| - 4.6e-09 35.9 0.3 9.1e-09 34.9 0.3 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|320101437|ref|YP_004177029.1| - 6.7e-07 29.0 0.1 1.3e-06 28.1 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|320101437|ref|YP_004177029.1| - 0.0044 17.3 0.4 0.015 15.5 0.2 2.1 2 0 0 2 2 2 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|320101437|ref|YP_004177029.1| - 0.068 12.5 3.3 0.26 10.6 3.3 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain zf-RNPHF PF08080.12 gi|320101437|ref|YP_004177029.1| - 0.091 12.7 0.2 0.18 11.8 0.2 1.4 1 0 0 1 1 1 0 RNPHF zinc finger Cpn60_TCP1 PF00118.24 gi|320101438|ref|YP_004177030.1| - 9.4e-180 598.4 13.8 1.1e-179 598.2 13.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TFIIE_alpha PF02002.17 gi|320101440|ref|YP_004177032.1| - 1.2e-08 34.7 0.0 2.7e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 TFIIE alpha subunit HypA PF01155.19 gi|320101440|ref|YP_004177032.1| - 0.00051 20.1 0.0 0.00075 19.5 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|320101440|ref|YP_004177032.1| - 0.012 15.2 2.0 0.016 14.7 0.7 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|320101440|ref|YP_004177032.1| - 0.014 15.3 0.2 0.031 14.2 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-CSL PF05207.13 gi|320101440|ref|YP_004177032.1| - 0.053 13.2 0.1 0.094 12.5 0.1 1.4 1 0 0 1 1 1 0 CSL zinc finger DNA_methylase PF00145.17 gi|320101441|ref|YP_004177033.1| - 8.3e-49 166.7 0.0 1.9e-33 116.2 0.0 2.0 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|320101441|ref|YP_004177033.1| - 0.0013 18.3 0.0 0.002 17.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF2122 PF09895.9 gi|320101442|ref|YP_004177034.1| - 1.2e-26 93.1 0.0 1.6e-26 92.7 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) YppF PF14178.6 gi|320101442|ref|YP_004177034.1| - 0.032 14.1 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 YppF-like protein AAA PF00004.29 gi|320101443|ref|YP_004177035.1| - 1.1e-43 148.8 0.0 2.8e-43 147.5 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|320101443|ref|YP_004177035.1| - 3e-16 58.9 0.0 7e-16 57.8 0.0 1.6 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|320101443|ref|YP_004177035.1| - 8.6e-12 44.8 0.6 2.6e-11 43.3 0.6 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|320101443|ref|YP_004177035.1| - 3.9e-07 30.3 0.0 1.1e-06 28.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|320101443|ref|YP_004177035.1| - 2.6e-06 27.9 0.3 0.00034 21.0 0.0 2.6 1 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|320101443|ref|YP_004177035.1| - 4.2e-06 26.6 0.0 1.1e-05 25.3 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|320101443|ref|YP_004177035.1| - 5.6e-06 26.4 0.1 1.9e-05 24.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Prot_ATP_OB_N PF17758.1 gi|320101443|ref|YP_004177035.1| - 0.00021 20.9 2.5 0.00029 20.4 1.0 2.0 2 0 0 2 2 1 1 Proteasomal ATPase OB N-terminal domain AAA_22 PF13401.6 gi|320101443|ref|YP_004177035.1| - 0.00073 19.8 0.2 0.021 15.1 0.0 2.5 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.13 gi|320101443|ref|YP_004177035.1| - 0.0012 18.0 0.0 0.0027 16.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|320101443|ref|YP_004177035.1| - 0.0018 18.3 0.0 0.0038 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|320101443|ref|YP_004177035.1| - 0.0025 17.1 0.2 0.044 13.1 0.0 2.8 3 0 0 3 3 3 1 Zeta toxin AAA_24 PF13479.6 gi|320101443|ref|YP_004177035.1| - 0.0038 17.0 0.0 0.09 12.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|320101443|ref|YP_004177035.1| - 0.0046 16.2 0.0 0.0076 15.5 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|320101443|ref|YP_004177035.1| - 0.0061 16.0 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|320101443|ref|YP_004177035.1| - 0.0068 16.7 0.2 0.021 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|320101443|ref|YP_004177035.1| - 0.007 16.3 0.3 0.045 13.7 0.0 2.3 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|320101443|ref|YP_004177035.1| - 0.01 16.4 0.2 0.049 14.2 0.0 2.3 3 0 0 3 3 2 1 AAA domain IstB_IS21 PF01695.17 gi|320101443|ref|YP_004177035.1| - 0.012 15.4 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|320101443|ref|YP_004177035.1| - 0.013 15.8 0.0 0.03 14.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|320101443|ref|YP_004177035.1| - 0.014 15.5 0.0 0.043 14.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain ATPase PF06745.13 gi|320101443|ref|YP_004177035.1| - 0.029 13.7 0.1 0.12 11.7 0.1 2.0 1 1 0 1 1 1 0 KaiC AAA_17 PF13207.6 gi|320101443|ref|YP_004177035.1| - 0.04 14.3 0.0 0.11 12.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|320101443|ref|YP_004177035.1| - 0.05 13.5 0.1 0.27 11.1 0.0 2.1 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.27 gi|320101443|ref|YP_004177035.1| - 0.057 13.9 0.0 0.15 12.6 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|320101443|ref|YP_004177035.1| - 0.06 13.0 1.1 6.1 6.5 0.1 2.5 2 1 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|320101443|ref|YP_004177035.1| - 0.071 12.8 0.1 0.29 10.8 0.0 2.0 3 0 0 3 3 2 0 Sigma-54 interaction domain Fusion_gly PF00523.18 gi|320101443|ref|YP_004177035.1| - 0.072 11.3 0.1 0.11 10.8 0.1 1.1 1 0 0 1 1 1 0 Fusion glycoprotein F0 AAA_7 PF12775.7 gi|320101443|ref|YP_004177035.1| - 0.14 11.7 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|320101443|ref|YP_004177035.1| - 0.14 11.7 0.8 0.34 10.4 0.0 2.0 3 0 0 3 3 2 0 AAA domain NB-ARC PF00931.22 gi|320101443|ref|YP_004177035.1| - 0.17 11.0 0.0 0.34 10.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|320101443|ref|YP_004177035.1| - 0.19 11.8 0.0 0.37 10.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE bZIP_1 PF00170.21 gi|320101443|ref|YP_004177035.1| - 0.33 11.1 4.3 0.094 12.8 0.7 2.0 2 0 0 2 2 1 0 bZIP transcription factor Pyr_redox_2 PF07992.14 gi|320101444|ref|YP_004177036.1| - 1.9e-45 155.3 0.8 2.3e-45 155.1 0.8 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|320101444|ref|YP_004177036.1| - 4.6e-23 81.9 0.5 1.9e-18 66.8 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|320101444|ref|YP_004177036.1| - 1.8e-15 57.2 2.7 6.6e-12 45.8 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|320101444|ref|YP_004177036.1| - 1.4e-11 44.1 5.4 1.5e-06 27.6 1.9 3.4 2 1 1 3 3 3 3 FAD binding domain FAD_oxidored PF12831.7 gi|320101444|ref|YP_004177036.1| - 2e-09 37.3 4.9 1.3e-07 31.3 0.0 3.2 3 1 1 4 4 4 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|320101444|ref|YP_004177036.1| - 1.4e-08 34.3 5.1 1.6e-05 24.2 0.9 3.5 4 0 0 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|320101444|ref|YP_004177036.1| - 5.5e-08 31.9 0.5 0.00098 17.9 0.2 3.2 3 0 0 3 3 3 3 HI0933-like protein Thi4 PF01946.17 gi|320101444|ref|YP_004177036.1| - 1.2e-07 31.2 0.5 9.9e-05 21.7 0.2 2.6 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.19 gi|320101444|ref|YP_004177036.1| - 6.3e-06 25.7 6.9 3.4e-05 23.3 0.8 2.5 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|320101444|ref|YP_004177036.1| - 1.8e-05 24.9 1.8 0.0048 17.1 0.2 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|320101444|ref|YP_004177036.1| - 0.00033 21.1 0.4 0.29 11.6 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding DAO PF01266.24 gi|320101444|ref|YP_004177036.1| - 0.00043 20.0 9.4 0.024 14.2 3.3 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|320101444|ref|YP_004177036.1| - 0.0012 17.8 3.6 0.24 10.2 0.9 2.3 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|320101444|ref|YP_004177036.1| - 0.0017 18.3 1.9 0.73 9.8 0.0 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|320101444|ref|YP_004177036.1| - 0.0044 16.1 0.8 0.05 12.7 0.3 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein PALP PF00291.25 gi|320101444|ref|YP_004177036.1| - 0.0046 16.4 1.3 0.32 10.4 0.4 2.2 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme AlaDh_PNT_C PF01262.21 gi|320101444|ref|YP_004177036.1| - 0.0083 15.4 1.1 1.3 8.2 0.4 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|320101444|ref|YP_004177036.1| - 0.015 14.4 0.5 11 5.1 0.0 3.0 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) XdhC_C PF13478.6 gi|320101444|ref|YP_004177036.1| - 0.075 13.5 0.0 19 5.8 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain VanW PF04294.13 gi|320101444|ref|YP_004177036.1| - 0.092 12.4 0.1 0.4 10.4 0.0 1.9 2 0 0 2 2 2 0 VanW like protein Aldo_ket_red PF00248.21 gi|320101445|ref|YP_004177037.1| - 6.8e-74 248.7 0.0 7.6e-74 248.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family HU-CCDC81_bac_2 PF18175.1 gi|320101445|ref|YP_004177037.1| - 0.17 11.8 0.4 1.8 8.5 0.0 2.6 3 0 0 3 3 3 0 CCDC81-like prokaryotic HU domain 2 HTH_3 PF01381.22 gi|320101446|ref|YP_004177038.1| - 1.6e-11 44.1 1.3 2.5e-11 43.5 1.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|320101446|ref|YP_004177038.1| - 9.5e-09 35.5 0.4 1.5e-08 34.8 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|320101446|ref|YP_004177038.1| - 2.6e-08 33.8 0.3 4.5e-08 33.0 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|320101446|ref|YP_004177038.1| - 0.0001 22.1 1.6 0.00011 22.0 0.5 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|320101446|ref|YP_004177038.1| - 0.02 14.8 0.1 0.031 14.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4428 PF14471.6 gi|320101446|ref|YP_004177038.1| - 0.067 13.1 0.2 0.14 12.1 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) HTH_1 PF00126.27 gi|320101446|ref|YP_004177038.1| - 0.096 12.6 0.1 19 5.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family BMFP PF04380.13 gi|320101446|ref|YP_004177038.1| - 0.25 11.9 3.6 0.66 10.5 3.6 1.7 1 1 0 1 1 1 0 Membrane fusogenic activity DUF2703 PF10865.8 gi|320101446|ref|YP_004177038.1| - 0.32 11.2 6.6 0.31 11.3 4.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF2703) Sgf11 PF08209.11 gi|320101446|ref|YP_004177038.1| - 0.62 9.7 3.4 2 8.1 1.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) MqsA_antitoxin PF15731.5 gi|320101446|ref|YP_004177038.1| - 0.69 10.0 4.7 0.67 10.1 0.7 2.3 1 1 1 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-DNL PF05180.12 gi|320101446|ref|YP_004177038.1| - 1.5 8.8 6.8 1.5 8.9 5.3 1.7 2 0 0 2 2 2 0 DNL zinc finger MMR_HSR1 PF01926.23 gi|320101447|ref|YP_004177039.1| - 6.4e-18 64.9 0.0 1.2e-17 64.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|320101447|ref|YP_004177039.1| - 7.2e-15 55.4 5.3 1.3e-14 54.6 5.3 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|320101447|ref|YP_004177039.1| - 2.9e-12 47.1 0.0 7.1e-12 45.9 0.0 1.7 2 0 0 2 2 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.18 gi|320101447|ref|YP_004177039.1| - 2.6e-09 36.8 0.0 4.8e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|320101447|ref|YP_004177039.1| - 0.00097 18.7 0.1 0.0047 16.5 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|320101447|ref|YP_004177039.1| - 0.0013 18.8 0.0 0.0028 17.7 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Arf PF00025.21 gi|320101447|ref|YP_004177039.1| - 0.0025 17.3 0.0 0.0061 16.0 0.0 1.7 1 1 0 1 1 1 1 ADP-ribosylation factor family AAA_28 PF13521.6 gi|320101447|ref|YP_004177039.1| - 0.0048 17.1 0.0 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|320101447|ref|YP_004177039.1| - 0.0053 17.3 0.0 0.0099 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|320101447|ref|YP_004177039.1| - 0.085 12.9 0.0 0.22 11.5 0.0 1.6 2 0 0 2 2 2 0 Dynamin family cobW PF02492.19 gi|320101447|ref|YP_004177039.1| - 0.12 12.0 1.7 11 5.6 0.2 2.7 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|320101447|ref|YP_004177039.1| - 0.12 12.9 0.1 0.24 11.9 0.1 1.4 1 0 0 1 1 1 0 ABC transporter SUIM_assoc PF16619.5 gi|320101447|ref|YP_004177039.1| - 0.49 10.5 0.0 0.49 10.5 0.0 2.0 2 0 0 2 2 2 0 Unstructured region C-term to UIM in Ataxin3 Trm56 PF01994.16 gi|320101448|ref|YP_004177040.1| - 1e-49 167.4 0.0 1.3e-49 167.0 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 NPV_P10 PF05531.12 gi|320101450|ref|YP_004177042.1| - 2.4e-08 34.3 16.5 0.0028 18.1 2.2 3.9 1 1 3 4 4 4 3 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|320101450|ref|YP_004177042.1| - 3.2e-07 30.4 6.3 6.2e-05 23.0 1.4 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|320101450|ref|YP_004177042.1| - 1.6e-06 28.2 20.6 4.8e-05 23.4 10.4 2.7 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF5082 PF16888.5 gi|320101450|ref|YP_004177042.1| - 6e-05 23.3 0.4 7.1 6.9 0.1 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) Prominin PF05478.11 gi|320101450|ref|YP_004177042.1| - 0.0004 18.5 3.1 0.00053 18.1 3.1 1.1 1 0 0 1 1 1 1 Prominin LPP PF04728.13 gi|320101450|ref|YP_004177042.1| - 0.0005 20.4 19.3 1 9.8 0.1 4.9 2 1 2 4 4 4 2 Lipoprotein leucine-zipper FlaC_arch PF05377.11 gi|320101450|ref|YP_004177042.1| - 0.00057 20.2 8.9 1.1 9.7 0.9 4.2 1 1 3 4 4 4 1 Flagella accessory protein C (FlaC) IFT57 PF10498.9 gi|320101450|ref|YP_004177042.1| - 0.00065 18.8 0.3 0.14 11.1 0.0 2.0 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 FPP PF05911.11 gi|320101450|ref|YP_004177042.1| - 0.00065 18.0 0.3 0.0009 17.6 0.3 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil DUF948 PF06103.11 gi|320101450|ref|YP_004177042.1| - 0.00069 19.8 19.9 0.032 14.5 3.3 4.0 2 1 2 4 4 3 1 Bacterial protein of unknown function (DUF948) MCPsignal PF00015.21 gi|320101450|ref|YP_004177042.1| - 0.0011 18.9 15.9 0.2 11.4 2.7 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain CENP-F_leu_zip PF10473.9 gi|320101450|ref|YP_004177042.1| - 0.0021 18.1 0.0 0.0049 16.9 0.0 1.4 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 COG2 PF06148.11 gi|320101450|ref|YP_004177042.1| - 0.0021 18.1 5.7 1.8 8.7 1.3 3.2 1 1 3 4 4 4 1 COG (conserved oligomeric Golgi) complex component, COG2 Serine_rich PF08824.10 gi|320101450|ref|YP_004177042.1| - 0.0024 17.9 3.7 0.0038 17.3 3.7 1.2 1 0 0 1 1 1 1 Serine rich protein interaction domain AAA_13 PF13166.6 gi|320101450|ref|YP_004177042.1| - 0.0026 16.5 0.8 0.0037 16.0 0.8 1.1 1 0 0 1 1 1 1 AAA domain DUF4795 PF16043.5 gi|320101450|ref|YP_004177042.1| - 0.0055 16.3 0.0 0.0096 15.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) Spc7 PF08317.11 gi|320101450|ref|YP_004177042.1| - 0.0061 15.5 0.0 0.0093 14.9 0.0 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein RmuC PF02646.16 gi|320101450|ref|YP_004177042.1| - 0.0062 15.7 2.9 1.6 7.8 0.1 3.0 1 1 2 3 3 3 1 RmuC family Sec34 PF04136.15 gi|320101450|ref|YP_004177042.1| - 0.0069 16.3 1.5 1.9 8.3 0.3 2.6 1 1 1 2 2 2 1 Sec34-like family BLOC1_2 PF10046.9 gi|320101450|ref|YP_004177042.1| - 0.0086 16.4 1.6 0.19 12.0 1.0 2.6 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|320101450|ref|YP_004177042.1| - 0.013 15.5 15.8 0.32 11.0 9.6 2.4 1 1 1 2 2 2 0 Laminin Domain II MscS_porin PF12795.7 gi|320101450|ref|YP_004177042.1| - 0.013 15.0 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Seryl_tRNA_N PF02403.22 gi|320101450|ref|YP_004177042.1| - 0.014 15.6 0.2 0.41 10.9 0.2 2.4 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Cast PF10174.9 gi|320101450|ref|YP_004177042.1| - 0.02 13.2 1.1 0.026 12.8 1.1 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Alanine_zipper PF11839.8 gi|320101450|ref|YP_004177042.1| - 0.022 15.1 4.6 0.59 10.5 0.0 3.7 4 1 0 4 4 3 0 Alanine-zipper, major outer membrane lipoprotein Allexi_40kDa PF05549.11 gi|320101450|ref|YP_004177042.1| - 0.033 13.7 6.0 0.046 13.2 2.9 2.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF2730 PF10805.8 gi|320101450|ref|YP_004177042.1| - 0.035 14.2 0.4 0.99 9.5 0.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) SesA PF17107.5 gi|320101450|ref|YP_004177042.1| - 0.046 13.9 1.6 6.3 7.0 0.5 2.2 1 1 1 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases DUF148 PF02520.17 gi|320101450|ref|YP_004177042.1| - 0.049 13.8 3.4 0.22 11.6 3.5 2.0 1 1 0 1 1 1 0 Domain of unknown function DUF148 AIP3 PF03915.13 gi|320101450|ref|YP_004177042.1| - 0.049 12.7 3.5 0.071 12.2 3.5 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 T7SS_ESX_EspC PF10824.8 gi|320101450|ref|YP_004177042.1| - 0.051 14.0 14.2 2.7 8.5 2.6 3.9 2 1 2 4 4 3 0 Excreted virulence factor EspC, type VII ESX diderm Apolipoprotein PF01442.18 gi|320101450|ref|YP_004177042.1| - 0.056 13.3 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF16 PF01519.16 gi|320101450|ref|YP_004177042.1| - 0.064 13.8 0.7 3.6 8.1 0.4 2.5 1 1 1 2 2 2 0 Protein of unknown function DUF16 RCDG1 PF15725.5 gi|320101450|ref|YP_004177042.1| - 0.065 13.7 0.8 0.28 11.6 0.0 2.3 2 0 0 2 2 2 0 Renal cancer differentiation gene 1 protein CLZ PF16526.5 gi|320101450|ref|YP_004177042.1| - 0.066 13.6 0.0 3.6 8.0 0.0 3.0 2 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels COG6 PF06419.11 gi|320101450|ref|YP_004177042.1| - 0.068 11.4 3.4 5.9 5.0 0.2 2.7 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 XhlA PF10779.9 gi|320101450|ref|YP_004177042.1| - 0.072 13.3 0.2 27 5.1 0.1 3.6 1 1 2 4 4 2 0 Haemolysin XhlA WEMBL PF05701.11 gi|320101450|ref|YP_004177042.1| - 0.075 11.7 1.9 0.11 11.2 1.9 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Phage_GP20 PF06810.11 gi|320101450|ref|YP_004177042.1| - 0.09 12.6 0.6 8.1 6.2 0.0 2.6 1 1 2 3 3 3 0 Phage minor structural protein GP20 Joubert PF15392.6 gi|320101450|ref|YP_004177042.1| - 0.09 12.5 1.2 0.13 11.9 1.2 1.1 1 0 0 1 1 1 0 Joubert syndrome-associated COG5 PF10392.9 gi|320101450|ref|YP_004177042.1| - 0.11 12.7 4.3 7.8 6.7 0.9 2.8 1 1 2 3 3 3 0 Golgi transport complex subunit 5 EzrA PF06160.12 gi|320101450|ref|YP_004177042.1| - 0.11 10.6 0.0 1.6 6.8 0.0 1.7 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA WXG100 PF06013.12 gi|320101450|ref|YP_004177042.1| - 0.12 12.6 0.4 7.7 6.8 0.2 3.0 1 1 2 3 3 3 0 Proteins of 100 residues with WXG ALIX_LYPXL_bnd PF13949.6 gi|320101450|ref|YP_004177042.1| - 0.13 11.6 0.2 0.2 10.9 0.2 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Phasin PF05597.11 gi|320101450|ref|YP_004177042.1| - 0.14 12.2 3.5 0.22 11.5 0.8 2.2 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DegS PF05384.11 gi|320101450|ref|YP_004177042.1| - 0.15 11.5 0.3 1.9 7.9 0.1 2.6 1 1 1 3 3 3 0 Sensor protein DegS LXG PF04740.12 gi|320101450|ref|YP_004177042.1| - 0.19 11.4 4.0 0.67 9.6 3.7 1.8 1 1 1 2 2 2 0 LXG domain of WXG superfamily Med11 PF10280.9 gi|320101450|ref|YP_004177042.1| - 0.19 12.2 3.9 0.44 11.0 3.9 1.6 1 1 0 1 1 1 0 Mediator complex protein Laminin_I PF06008.14 gi|320101450|ref|YP_004177042.1| - 0.22 11.2 1.5 0.42 10.3 0.4 1.6 1 1 0 1 1 1 0 Laminin Domain I DUF724 PF05266.14 gi|320101450|ref|YP_004177042.1| - 0.23 11.3 0.1 0.36 10.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) UPF0184 PF03670.13 gi|320101450|ref|YP_004177042.1| - 0.27 11.6 1.5 18 5.8 0.1 2.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) DUF745 PF05335.13 gi|320101450|ref|YP_004177042.1| - 0.28 10.9 2.8 1.3 8.8 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF745) Nop14 PF04147.12 gi|320101450|ref|YP_004177042.1| - 0.29 9.3 0.5 0.39 8.9 0.5 1.0 1 0 0 1 1 1 0 Nop14-like family SF-assemblin PF06705.11 gi|320101450|ref|YP_004177042.1| - 0.3 10.4 3.2 5.1 6.4 2.0 2.2 1 1 1 2 2 2 0 SF-assemblin/beta giardin Syntaxin PF00804.25 gi|320101450|ref|YP_004177042.1| - 0.31 10.7 0.9 1.6 8.4 0.5 1.9 1 1 1 2 2 2 0 Syntaxin Tropomyosin PF00261.20 gi|320101450|ref|YP_004177042.1| - 0.32 10.3 0.0 16 4.8 0.1 2.0 1 1 1 2 2 2 0 Tropomyosin Herpes_UL49_5 PF05702.11 gi|320101450|ref|YP_004177042.1| - 0.37 10.9 2.7 1.3 9.1 2.7 1.9 1 0 0 1 1 1 0 Herpesvirus UL49.5 envelope/tegument protein Fib_alpha PF08702.10 gi|320101450|ref|YP_004177042.1| - 0.4 10.8 3.2 1 9.5 1.5 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Flagellin_C PF00700.21 gi|320101450|ref|YP_004177042.1| - 0.73 10.2 11.4 0.47 10.9 0.9 3.2 2 1 1 3 3 3 0 Bacterial flagellin C-terminal helical region Syntaxin_2 PF14523.6 gi|320101450|ref|YP_004177042.1| - 1.1 9.7 6.4 2.2 8.7 2.0 2.4 1 1 1 2 2 2 0 Syntaxin-like protein Bacillus_HBL PF05791.11 gi|320101450|ref|YP_004177042.1| - 1.2 8.9 4.9 2.6 7.8 1.9 2.2 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) BORCS6 PF10157.9 gi|320101450|ref|YP_004177042.1| - 1.3 9.2 19.2 1.1 9.5 2.2 3.1 1 1 0 2 2 2 0 BLOC-1-related complex sub-unit 6 Baculo_p24 PF05073.12 gi|320101450|ref|YP_004177042.1| - 1.3 8.7 4.5 1.6 8.5 3.2 1.7 1 1 1 2 2 1 0 Baculovirus P24 capsid protein Sec5 PF15469.6 gi|320101450|ref|YP_004177042.1| - 2.5 7.9 4.6 14 5.4 0.1 2.3 1 1 1 2 2 2 0 Exocyst complex component Sec5 DASH_Duo1 PF08651.10 gi|320101450|ref|YP_004177042.1| - 3.7 7.4 6.0 21 5.0 0.3 3.2 1 1 2 3 3 3 0 DASH complex subunit Duo1 DUF4854 PF16146.5 gi|320101450|ref|YP_004177042.1| - 5.5 7.4 6.7 7.9 6.9 1.9 3.1 1 1 2 4 4 4 0 Domain of unknown function (DUF4854) Fer4_24 PF18109.1 gi|320101450|ref|YP_004177042.1| - 5.5 7.4 17.3 10 6.5 0.5 5.4 6 1 0 6 6 4 0 Ferredoxin I 4Fe-4S cluster domain Peptidase_S8 PF00082.22 gi|320101451|ref|YP_004177043.1| - 7.9e-35 120.6 0.0 2e-34 119.3 0.0 1.6 1 1 0 1 1 1 1 Subtilase family RHH_3 PF12651.7 gi|320101452|ref|YP_004177044.1| - 0.092 12.7 0.1 0.43 10.6 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|320101453|ref|YP_004177045.1| - 5.7e-05 22.9 0.8 0.00026 20.8 0.1 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family CopG_antitoxin PF12441.8 gi|320101453|ref|YP_004177045.1| - 0.0067 16.9 0.0 0.015 15.8 0.0 1.6 2 0 0 2 2 2 1 CopG antitoxin of type II toxin-antitoxin system RHH_3 PF12651.7 gi|320101453|ref|YP_004177045.1| - 0.017 15.1 0.3 0.031 14.2 0.3 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix domain Proteasome PF00227.26 gi|320101454|ref|YP_004177046.1| - 8e-52 175.5 0.0 9.9e-52 175.2 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit SKICH PF17751.1 gi|320101455|ref|YP_004177047.1| - 0.12 12.9 0.1 0.51 10.9 0.0 2.0 2 0 0 2 2 2 0 SKICH domain MMR_HSR1 PF01926.23 gi|320101456|ref|YP_004177048.1| - 1.8e-21 76.3 0.0 2.8e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|320101456|ref|YP_004177048.1| - 1.4e-17 63.2 0.0 2.7e-17 62.3 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|320101456|ref|YP_004177048.1| - 6.9e-13 48.4 0.0 9.7e-13 47.9 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|320101456|ref|YP_004177048.1| - 2.2e-05 24.1 0.1 0.0018 17.9 0.1 2.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|320101456|ref|YP_004177048.1| - 5.5e-05 23.3 0.2 0.04 14.0 0.0 2.2 1 1 1 2 2 2 2 Dynamin family RsgA_GTPase PF03193.16 gi|320101456|ref|YP_004177048.1| - 0.0011 18.9 1.0 1.5 8.7 0.0 2.8 2 1 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|320101456|ref|YP_004177048.1| - 0.0044 17.0 0.0 0.0073 16.3 0.0 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|320101456|ref|YP_004177048.1| - 0.0046 16.4 0.0 0.0065 15.9 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit cobW PF02492.19 gi|320101456|ref|YP_004177048.1| - 0.012 15.2 0.1 0.61 9.6 0.1 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Ras PF00071.22 gi|320101456|ref|YP_004177048.1| - 0.012 15.2 0.0 0.042 13.5 0.0 1.8 1 1 0 1 1 1 0 Ras family Gtr1_RagA PF04670.12 gi|320101456|ref|YP_004177048.1| - 0.059 12.7 0.0 0.08 12.3 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_18 PF13238.6 gi|320101456|ref|YP_004177048.1| - 0.059 13.9 0.0 0.13 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|320101456|ref|YP_004177048.1| - 0.071 13.0 0.4 0.33 10.8 0.0 2.1 2 0 0 2 2 2 0 NTPase Arf PF00025.21 gi|320101456|ref|YP_004177048.1| - 0.086 12.3 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_14 PF13173.6 gi|320101456|ref|YP_004177048.1| - 0.089 12.8 0.0 0.26 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain KN17_SH3 PF18131.1 gi|320101456|ref|YP_004177048.1| - 0.099 12.8 0.1 0.24 11.6 0.1 1.6 1 0 0 1 1 1 0 KN17 SH3-like C-terminal domain MeaB PF03308.16 gi|320101456|ref|YP_004177048.1| - 0.1 11.5 0.0 0.21 10.6 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|320101456|ref|YP_004177048.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|320101456|ref|YP_004177048.1| - 0.23 11.7 0.0 4.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase RTC PF01137.21 gi|320101457|ref|YP_004177049.1| - 2.6e-80 268.8 0.0 3.1e-80 268.5 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|320101457|ref|YP_004177049.1| - 2.1e-21 76.4 0.0 3.2e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_like PF01467.26 gi|320101458|ref|YP_004177050.1| - 1e-13 51.7 0.0 5.7e-13 49.3 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|320101458|ref|YP_004177050.1| - 0.014 14.7 0.0 0.88 8.7 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Beta-Casp PF10996.8 gi|320101459|ref|YP_004177051.1| - 1.1e-23 83.6 0.0 2.9e-23 82.2 0.0 1.8 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|320101459|ref|YP_004177051.1| - 3.8e-19 68.4 4.0 1e-18 67.0 2.3 2.3 2 0 0 2 2 2 1 KH domain Lactamase_B_6 PF16661.5 gi|320101459|ref|YP_004177051.1| - 4.6e-17 62.1 0.0 4.3e-15 55.7 0.0 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|320101459|ref|YP_004177051.1| - 2.2e-15 56.3 0.0 7.4e-15 54.6 0.0 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|320101459|ref|YP_004177051.1| - 1.9e-10 41.1 3.3 5.4e-09 36.4 3.3 2.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|320101459|ref|YP_004177051.1| - 5.5e-10 39.1 0.2 2e-09 37.2 0.2 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|320101459|ref|YP_004177051.1| - 0.04 13.8 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Proteasome PF00227.26 gi|320101460|ref|YP_004177052.1| - 4.3e-50 169.8 1.0 5.4e-50 169.5 1.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Fe-ADH_2 PF13685.6 gi|320101461|ref|YP_004177053.1| - 3.7e-72 243.0 0.2 4.5e-72 242.7 0.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|320101461|ref|YP_004177053.1| - 4.9e-21 75.0 1.3 8.4e-20 70.9 1.3 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|320101461|ref|YP_004177053.1| - 3.9e-06 26.2 0.2 0.0031 16.7 0.0 2.9 2 1 0 2 2 2 2 3-dehydroquinate synthase FKBP_C PF00254.28 gi|320101462|ref|YP_004177054.1| - 4.6e-08 33.3 0.1 2.6e-07 30.9 0.1 2.1 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|320101462|ref|YP_004177054.1| - 9.2e-05 22.5 0.0 0.00042 20.4 0.0 2.0 2 0 0 2 2 2 1 FKBP26_C-terminal GreA_GreB PF01272.19 gi|320101462|ref|YP_004177054.1| - 0.12 12.3 1.1 15 5.6 0.0 3.5 4 0 0 4 4 4 0 Transcription elongation factor, GreA/GreB, C-term PUA PF01472.20 gi|320101463|ref|YP_004177055.1| - 1e-18 67.1 1.6 1.4e-18 66.7 1.6 1.2 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|320101463|ref|YP_004177055.1| - 3.9e-08 33.5 0.0 5.5e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|320101463|ref|YP_004177055.1| - 0.00091 19.4 0.4 0.0038 17.5 0.1 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain PUA_3 PF17785.1 gi|320101463|ref|YP_004177055.1| - 0.12 12.2 0.7 0.27 11.1 0.2 2.0 2 1 0 2 2 2 0 PUA-like domain Toprim_4 PF13662.6 gi|320101464|ref|YP_004177056.1| - 9.4e-08 32.4 0.2 3.4e-07 30.6 0.1 2.0 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|320101464|ref|YP_004177056.1| - 4.2e-06 27.1 0.0 1.1e-05 25.8 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|320101464|ref|YP_004177056.1| - 0.00088 19.5 0.1 0.0027 17.9 0.0 1.9 2 0 0 2 2 2 1 Toprim domain Rota_NSP4 PF01452.16 gi|320101464|ref|YP_004177056.1| - 0.027 14.1 0.3 0.059 13.0 0.3 1.5 1 0 0 1 1 1 0 Rotavirus non structural protein NOG1_N PF17835.1 gi|320101464|ref|YP_004177056.1| - 0.11 12.5 2.1 0.14 12.2 0.2 2.0 2 0 0 2 2 2 0 NOG1 N-terminal helical domain Ribosomal_L37e PF01907.19 gi|320101465|ref|YP_004177057.1| - 1.9e-24 85.6 11.9 2.1e-24 85.4 11.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DUF35_N PF12172.8 gi|320101465|ref|YP_004177057.1| - 4.2 7.3 9.7 43 4.1 9.7 2.1 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) LSM PF01423.22 gi|320101466|ref|YP_004177058.1| - 1.6e-22 79.0 0.5 1.7e-22 78.9 0.5 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|320101466|ref|YP_004177058.1| - 0.012 15.8 0.1 0.015 15.5 0.1 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain DUF150_C PF17384.2 gi|320101466|ref|YP_004177058.1| - 0.07 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 RimP C-terminal SH3 domain DNA_pol_B PF00136.21 gi|320101467|ref|YP_004177059.1| - 2.8e-70 237.3 0.0 4.2e-70 236.7 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|320101467|ref|YP_004177059.1| - 2.1e-36 125.7 0.0 6.3e-35 120.9 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|320101467|ref|YP_004177059.1| - 5.1e-07 29.8 0.0 1.2e-06 28.6 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|320101467|ref|YP_004177059.1| - 0.0016 18.2 0.0 0.0032 17.2 0.0 1.5 1 1 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|320101467|ref|YP_004177059.1| - 0.078 11.8 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral DUF1664 PF07889.12 gi|320101467|ref|YP_004177059.1| - 2.5 8.1 4.3 1.3 9.1 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) eRF1_1 PF03463.15 gi|320101468|ref|YP_004177060.1| - 4e-26 91.5 0.0 7.6e-26 90.6 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|320101468|ref|YP_004177060.1| - 8.5e-20 71.3 0.3 2e-19 70.1 0.1 1.8 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|320101468|ref|YP_004177060.1| - 2.5e-09 37.6 0.1 5.9e-09 36.3 0.1 1.7 1 0 0 1 1 1 1 eRF1 domain 2 baeRF_family10 PF18854.1 gi|320101468|ref|YP_004177060.1| - 0.0045 17.2 3.0 0.0054 17.0 1.0 2.4 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 DUF2226 PF09987.9 gi|320101468|ref|YP_004177060.1| - 0.012 15.0 0.4 0.037 13.4 0.0 1.9 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2226) UvrA_inter PF17760.1 gi|320101468|ref|YP_004177060.1| - 0.11 12.5 0.6 3.5 7.8 0.0 2.7 3 0 0 3 3 3 0 UvrA interaction domain PRMT5 PF05185.16 gi|320101468|ref|YP_004177060.1| - 0.12 12.3 0.1 0.33 10.8 0.1 1.7 2 0 0 2 2 2 0 PRMT5 arginine-N-methyltransferase NTP_transf_2 PF01909.23 gi|320101469|ref|YP_004177061.1| - 1.4e-05 25.3 0.0 2.3e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|320101469|ref|YP_004177061.1| - 0.00011 22.3 0.0 0.00019 21.4 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Peptidase_M50 PF02163.22 gi|320101470|ref|YP_004177062.1| - 3.8e-12 46.0 7.3 3.4e-11 42.9 7.3 2.1 1 1 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 gi|320101470|ref|YP_004177062.1| - 7.4e-09 35.3 0.3 1.5e-08 34.4 0.3 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|320101470|ref|YP_004177062.1| - 6.5e-07 29.6 0.0 1.1e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|320101470|ref|YP_004177062.1| - 1.2e-06 28.7 0.0 2.3e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PALP PF00291.25 gi|320101471|ref|YP_004177063.1| - 3.5e-67 226.9 0.1 4e-67 226.7 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-C4_Topoisom PF01396.19 gi|320101471|ref|YP_004177063.1| - 0.019 14.8 2.4 0.71 9.7 0.2 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Mu-like_Com PF10122.9 gi|320101471|ref|YP_004177063.1| - 0.073 12.5 2.2 0.24 10.9 0.0 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.11 gi|320101471|ref|YP_004177063.1| - 0.073 13.0 0.6 0.18 11.7 0.6 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-Mss51 PF13824.6 gi|320101471|ref|YP_004177063.1| - 0.29 11.3 0.5 0.62 10.2 0.5 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 gi|320101471|ref|YP_004177063.1| - 0.36 10.3 6.4 3.2 7.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|320101471|ref|YP_004177063.1| - 0.36 10.6 7.7 1.7 8.5 0.7 2.2 1 1 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.20 gi|320101471|ref|YP_004177063.1| - 0.59 10.2 5.0 5.8 7.0 0.3 2.5 2 0 0 2 2 2 0 Rubredoxin zf-MIZ PF02891.20 gi|320101471|ref|YP_004177063.1| - 0.78 9.5 3.9 9.9 6.0 0.2 2.3 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger Cys_rich_CPXG PF14255.6 gi|320101471|ref|YP_004177063.1| - 0.9 9.5 2.6 6.8 6.7 2.6 2.0 1 1 0 1 1 1 0 Cysteine-rich CPXCG HalOD2 PF18547.1 gi|320101471|ref|YP_004177063.1| - 1.3 8.9 4.1 9.4 6.2 2.4 2.6 2 1 1 3 3 3 0 Halobacterial output domain 2 zf-RanBP PF00641.18 gi|320101471|ref|YP_004177063.1| - 2.1 7.7 4.6 13 5.2 0.4 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Rubredoxin_2 PF18073.1 gi|320101471|ref|YP_004177063.1| - 2.4 8.0 11.8 21 4.9 11.7 2.3 1 1 0 1 1 1 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|320101471|ref|YP_004177063.1| - 2.7 8.1 4.9 7.6 6.7 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_S26e PF01283.19 gi|320101472|ref|YP_004177064.1| - 5.6e-24 84.6 3.2 6.4e-24 84.5 3.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|320101472|ref|YP_004177064.1| - 0.0038 17.4 1.1 0.12 12.6 0.6 2.5 2 0 0 2 2 2 1 C4-type zinc ribbon domain Sgf11 PF08209.11 gi|320101472|ref|YP_004177064.1| - 0.011 15.3 0.3 0.011 15.3 0.3 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DZR PF12773.7 gi|320101472|ref|YP_004177064.1| - 0.022 14.8 1.1 0.16 12.0 0.1 2.1 2 0 0 2 2 2 0 Double zinc ribbon zf-C2HC_2 PF13913.6 gi|320101472|ref|YP_004177064.1| - 0.03 14.2 0.2 0.11 12.5 0.0 2.0 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Yippee-Mis18 PF03226.14 gi|320101472|ref|YP_004177064.1| - 0.075 13.3 1.0 0.36 11.1 1.3 1.8 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF35_N PF12172.8 gi|320101472|ref|YP_004177064.1| - 0.16 11.9 0.3 0.16 11.9 0.3 2.0 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Lar_restr_allev PF14354.6 gi|320101472|ref|YP_004177064.1| - 0.28 11.6 3.6 1.1 9.6 0.3 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Methyltransf_31 PF13847.6 gi|320101474|ref|YP_004177066.1| - 9.5e-10 38.5 0.0 1.4e-09 38.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|320101474|ref|YP_004177066.1| - 4.6e-09 36.9 0.0 6.5e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|320101474|ref|YP_004177066.1| - 1.4e-07 31.1 0.0 1.5e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.12 gi|320101474|ref|YP_004177066.1| - 1.2e-05 25.9 0.0 2.3e-05 24.9 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain PrmA PF06325.13 gi|320101474|ref|YP_004177066.1| - 2e-05 24.2 0.0 2.2e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|320101474|ref|YP_004177066.1| - 2.3e-05 24.3 0.0 3.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|320101474|ref|YP_004177066.1| - 7.8e-05 22.3 0.0 0.00037 20.1 0.0 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 MetW PF07021.12 gi|320101474|ref|YP_004177066.1| - 0.00054 19.6 0.0 0.00065 19.4 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|320101474|ref|YP_004177066.1| - 0.00086 18.9 0.0 0.0012 18.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|320101474|ref|YP_004177066.1| - 0.001 18.6 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.6 gi|320101474|ref|YP_004177066.1| - 0.0028 17.5 0.0 0.0031 17.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|320101474|ref|YP_004177066.1| - 0.0031 17.3 0.1 0.0038 17.0 0.1 1.2 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|320101474|ref|YP_004177066.1| - 0.0031 18.2 0.0 0.0059 17.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|320101474|ref|YP_004177066.1| - 0.011 15.0 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain UPF0020 PF01170.18 gi|320101474|ref|YP_004177066.1| - 0.019 14.6 0.3 0.36 10.5 0.3 2.1 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_20 PF12147.8 gi|320101474|ref|YP_004177066.1| - 0.022 13.9 0.1 0.027 13.6 0.1 1.1 1 0 0 1 1 1 0 Putative methyltransferase N6_Mtase PF02384.16 gi|320101474|ref|YP_004177066.1| - 0.054 12.8 0.0 0.071 12.4 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase N6_N4_Mtase PF01555.18 gi|320101474|ref|YP_004177066.1| - 0.061 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 DNA methylase TrmK PF04816.12 gi|320101474|ref|YP_004177066.1| - 0.087 12.3 0.0 0.27 10.7 0.0 1.7 1 1 1 2 2 2 0 tRNA (adenine(22)-N(1))-methyltransferase Methyltransf_15 PF09445.10 gi|320101474|ref|YP_004177066.1| - 0.11 12.1 0.0 0.12 11.9 0.0 1.3 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TehB PF03848.14 gi|320101474|ref|YP_004177066.1| - 0.12 11.7 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB MethyltransfD12 PF02086.15 gi|320101476|ref|YP_004177068.1| - 0.0038 16.9 0.1 0.034 13.8 0.0 2.1 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase UPF0020 PF01170.18 gi|320101476|ref|YP_004177068.1| - 0.0052 16.5 0.0 0.3 10.8 0.0 2.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Beta_elim_lyase PF01212.21 gi|320101476|ref|YP_004177068.1| - 0.25 10.6 0.2 0.76 9.0 0.1 1.8 2 0 0 2 2 2 0 Beta-eliminating lyase ZapA PF05164.13 gi|320101476|ref|YP_004177068.1| - 3.1 8.3 4.4 0.81 10.2 0.1 2.3 3 0 0 3 3 3 0 Cell division protein ZapA ResIII PF04851.15 gi|320101477|ref|YP_004177069.1| - 0.0044 17.1 0.0 2.3 8.2 0.0 3.4 3 0 0 3 3 3 2 Type III restriction enzyme, res subunit MIF4G_like PF09088.11 gi|320101477|ref|YP_004177069.1| - 0.052 13.3 0.0 0.18 11.5 0.0 1.9 1 0 0 1 1 1 0 MIF4G like rve_3 PF13683.6 gi|320101477|ref|YP_004177069.1| - 0.1 12.4 0.0 0.27 11.1 0.0 1.8 1 0 0 1 1 1 0 Integrase core domain Peptidase_M55 PF04951.13 gi|320101479|ref|YP_004177071.1| - 1.6e-81 273.6 0.0 1.8e-81 273.4 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase AA_permease_2 PF13520.6 gi|320101480|ref|YP_004177072.1| - 1.7e-40 139.2 49.8 2e-40 138.9 49.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|320101480|ref|YP_004177072.1| - 1.4e-30 106.3 46.7 2.1e-30 105.7 46.7 1.2 1 0 0 1 1 1 1 Amino acid permease Peptidase_M19 PF01244.21 gi|320101481|ref|YP_004177073.1| - 1.6e-82 277.2 0.0 1.8e-82 277.1 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 gi|320101481|ref|YP_004177073.1| - 0.021 14.6 0.0 0.07 12.9 0.0 2.0 1 1 0 1 1 1 0 Amidohydrolase BPD_transp_1 PF00528.22 gi|320101482|ref|YP_004177074.1| - 7.1e-26 91.1 11.8 9.5e-26 90.7 11.8 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component GCD14 PF08704.10 gi|320101483|ref|YP_004177075.1| - 4.4e-34 118.3 0.0 4.8e-31 108.3 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|320101483|ref|YP_004177075.1| - 2.7e-09 37.0 0.0 4.2e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|320101483|ref|YP_004177075.1| - 3.1e-07 31.0 0.0 8.8e-07 29.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|320101483|ref|YP_004177075.1| - 2.8e-06 27.3 0.0 4.1e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|320101483|ref|YP_004177075.1| - 9.4e-06 26.2 0.0 3.6e-05 24.3 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|320101483|ref|YP_004177075.1| - 0.00012 22.7 0.0 0.00029 21.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|320101483|ref|YP_004177075.1| - 0.00019 20.8 0.0 0.00038 19.9 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family GCD14_N PF14801.6 gi|320101483|ref|YP_004177075.1| - 0.00033 20.5 0.4 0.00074 19.3 0.4 1.7 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term UPF0020 PF01170.18 gi|320101483|ref|YP_004177075.1| - 0.0022 17.7 0.1 0.035 13.8 0.1 2.3 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_24 PF13578.6 gi|320101483|ref|YP_004177075.1| - 0.0037 18.2 0.0 0.012 16.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain rRNA_methylase PF06962.12 gi|320101483|ref|YP_004177075.1| - 0.011 15.7 0.0 0.25 11.3 0.0 2.6 2 1 1 3 3 3 0 Putative rRNA methylase PrmA PF06325.13 gi|320101483|ref|YP_004177075.1| - 0.028 13.8 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|320101483|ref|YP_004177075.1| - 0.053 13.0 0.0 0.25 10.8 0.0 1.9 1 1 0 1 1 1 0 Putative methyltransferase Methyltransf_23 PF13489.6 gi|320101483|ref|YP_004177075.1| - 0.065 13.1 0.0 0.28 11.0 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|320101483|ref|YP_004177075.1| - 0.17 11.8 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF3850 PF12961.7 gi|320101484|ref|YP_004177076.1| - 0.13 12.3 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3850) RHH_1 PF01402.21 gi|320101485|ref|YP_004177077.1| - 6.8e-10 38.5 0.3 8.4e-10 38.2 0.3 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|320101485|ref|YP_004177077.1| - 2e-05 24.8 0.0 2.1e-05 24.7 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|320101485|ref|YP_004177077.1| - 3.9e-05 24.0 0.0 4.1e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|320101485|ref|YP_004177077.1| - 0.0015 18.4 0.1 0.002 18.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB PMT_2 PF13231.6 gi|320101486|ref|YP_004177078.1| - 5.4e-11 43.0 14.0 5.4e-11 43.0 14.0 2.9 3 2 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|320101486|ref|YP_004177078.1| - 0.00063 19.4 26.2 0.0044 16.6 18.6 3.9 2 1 1 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_tran_WecB PF03808.13 gi|320101487|ref|YP_004177079.1| - 0.15 12.0 0.0 0.31 11.0 0.0 1.5 2 0 0 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family DUF4199 PF13858.6 gi|320101488|ref|YP_004177080.1| - 1.6 9.1 0.0 1.6 9.1 0.0 3.5 3 1 0 4 4 4 0 Protein of unknown function (DUF4199) DNA_pol_B PF00136.21 gi|320101489|ref|YP_004177081.1| - 1.1e-43 149.6 0.0 3.2e-43 148.1 0.0 1.7 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|320101489|ref|YP_004177081.1| - 1.8e-31 109.5 0.1 6.5e-31 107.7 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|320101489|ref|YP_004177081.1| - 1.7e-05 24.9 0.0 9.5e-05 22.4 0.0 2.2 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|320101489|ref|YP_004177081.1| - 0.012 15.4 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|320101489|ref|YP_004177081.1| - 0.025 13.4 0.0 0.071 12.0 0.0 1.6 2 0 0 2 2 2 0 DNA polymerase type B, organellar and viral ACT_6 PF13740.6 gi|320101489|ref|YP_004177081.1| - 0.096 12.7 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 ACT domain NAC PF01849.18 gi|320101490|ref|YP_004177082.1| - 1.3e-12 47.5 0.2 1.3e-12 47.5 0.2 1.8 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.6 gi|320101490|ref|YP_004177082.1| - 0.03 14.1 0.0 0.3 11.0 0.0 2.1 2 0 0 2 2 2 0 UBA-like domain HTH_33 PF13592.6 gi|320101490|ref|YP_004177082.1| - 0.09 12.4 0.0 3.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix Beta-Casp PF10996.8 gi|320101491|ref|YP_004177083.1| - 6.9e-19 68.2 0.0 1.2e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_6 PF16661.5 gi|320101491|ref|YP_004177083.1| - 2.3e-12 46.8 0.0 3.8e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|320101491|ref|YP_004177083.1| - 2.7e-11 43.2 0.0 7.1e-11 41.9 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|320101491|ref|YP_004177083.1| - 1.5e-09 38.2 0.5 2.8e-09 37.3 0.5 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|320101491|ref|YP_004177083.1| - 1.6e-06 27.8 0.0 2.6e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|320101491|ref|YP_004177083.1| - 0.011 15.7 0.0 0.033 14.1 0.0 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain GTP_EFTU PF00009.27 gi|320101492|ref|YP_004177084.1| - 1.1e-60 204.5 0.2 2.1e-60 203.6 0.1 1.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|320101492|ref|YP_004177084.1| - 1.4e-30 105.6 0.2 7.6e-30 103.2 0.0 2.4 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|320101492|ref|YP_004177084.1| - 3.3e-21 75.1 0.0 9.5e-21 73.6 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|320101492|ref|YP_004177084.1| - 1.4e-20 73.1 0.0 3.2e-20 72.0 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|320101492|ref|YP_004177084.1| - 2.7e-13 50.1 0.0 7.3e-13 48.7 0.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|320101492|ref|YP_004177084.1| - 5.5e-05 23.2 0.0 0.00013 22.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase HIGH_NTase1_ass PF16581.5 gi|320101492|ref|YP_004177084.1| - 0.03 14.3 0.1 0.078 13.0 0.1 1.6 1 0 0 1 1 1 0 Cytidyltransferase-related C-terminal region SRPRB PF09439.10 gi|320101492|ref|YP_004177084.1| - 0.036 13.5 0.0 0.076 12.4 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RF3_C PF16658.5 gi|320101492|ref|YP_004177084.1| - 0.062 13.1 0.1 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 Class II release factor RF3, C-terminal domain Ras PF00071.22 gi|320101492|ref|YP_004177084.1| - 0.07 12.7 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Ras family Septin PF00735.18 gi|320101492|ref|YP_004177084.1| - 0.11 11.7 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Septin RsgA_GTPase PF03193.16 gi|320101492|ref|YP_004177084.1| - 0.12 12.3 1.1 0.35 10.8 0.3 2.1 1 1 1 2 2 2 0 RsgA GTPase DUF3194 PF11419.8 gi|320101493|ref|YP_004177085.1| - 0.0032 17.8 0.1 0.0034 17.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.20 gi|320101494|ref|YP_004177086.1| - 1.5e-16 60.2 8.5 1.7e-16 60.1 8.5 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.17 gi|320101494|ref|YP_004177086.1| - 0.0028 17.6 7.3 0.14 12.0 0.4 2.1 1 1 1 2 2 2 2 Prefoldin subunit U79_P34 PF03064.16 gi|320101494|ref|YP_004177086.1| - 0.0053 16.2 0.0 0.0069 15.8 0.0 1.2 1 0 0 1 1 1 1 HSV U79 / HCMV P34 HOASN PF14515.6 gi|320101494|ref|YP_004177086.1| - 0.048 14.0 0.0 0.06 13.7 0.0 1.2 1 0 0 1 1 1 0 Haem-oxygenase-associated N-terminal helices DUF29 PF01724.16 gi|320101494|ref|YP_004177086.1| - 0.12 12.6 2.2 0.15 12.3 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF29 Vir_act_alpha_C PF10400.9 gi|320101494|ref|YP_004177086.1| - 1.1 10.0 5.5 2.6 8.8 0.7 2.1 1 1 1 2 2 2 0 Virulence activator alpha C-term bZIP_1 PF00170.21 gi|320101494|ref|YP_004177086.1| - 1.7 8.8 8.9 0.46 10.6 2.8 2.2 2 0 0 2 2 2 0 bZIP transcription factor APG6_N PF17675.1 gi|320101494|ref|YP_004177086.1| - 2 9.0 8.2 4.6 7.8 7.6 1.7 1 1 1 2 2 2 0 Apg6 coiled-coil region Pcc1 PF09341.10 gi|320101495|ref|YP_004177087.1| - 0.0025 17.9 0.0 0.003 17.7 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.18 gi|320101496|ref|YP_004177088.1| - 0.0018 18.4 0.0 0.0024 18.0 0.0 1.2 1 0 0 1 1 1 1 Brix domain Ribosomal_L37ae PF01780.19 gi|320101497|ref|YP_004177089.1| - 5.1e-33 113.0 2.2 5.5e-33 112.9 2.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|320101497|ref|YP_004177089.1| - 2.4e-06 27.4 1.8 3.4e-06 26.9 1.8 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|320101497|ref|YP_004177089.1| - 8.6e-05 22.4 0.4 0.00012 22.0 0.4 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.6 gi|320101497|ref|YP_004177089.1| - 0.0056 17.0 1.0 0.091 13.2 0.3 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Lar_restr_allev PF14354.6 gi|320101497|ref|YP_004177089.1| - 0.0082 16.5 0.4 0.014 15.7 0.4 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|320101497|ref|YP_004177089.1| - 0.0086 15.6 0.2 0.013 14.9 0.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|320101497|ref|YP_004177089.1| - 0.017 15.8 2.4 1 10.1 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.6 gi|320101497|ref|YP_004177089.1| - 0.034 14.2 1.2 0.47 10.5 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_13 PF09855.9 gi|320101497|ref|YP_004177089.1| - 0.058 13.6 0.1 1.9 8.7 0.0 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf_CopZ PF18423.1 gi|320101497|ref|YP_004177089.1| - 0.15 12.0 0.8 0.41 10.6 0.1 1.9 2 0 0 2 2 2 0 Zinc binding domain zf-ribbon_3 PF13248.6 gi|320101497|ref|YP_004177089.1| - 0.35 10.3 4.9 4.5 6.8 1.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|320101497|ref|YP_004177089.1| - 0.47 10.8 3.8 1.6 9.2 1.1 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|320101497|ref|YP_004177089.1| - 1.2 9.0 7.5 8.4 6.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|320101497|ref|YP_004177089.1| - 3.1 8.2 9.1 16 5.9 9.1 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase RNase_PH PF01138.21 gi|320101498|ref|YP_004177090.1| - 4.2e-25 88.8 0.0 1.8e-24 86.7 0.0 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|320101498|ref|YP_004177090.1| - 5.7e-14 51.9 0.1 1.1e-13 51.0 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|320101499|ref|YP_004177091.1| - 5.4e-37 127.2 0.0 7e-37 126.9 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|320101499|ref|YP_004177091.1| - 3.2e-16 59.1 0.2 5.9e-16 58.2 0.2 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|320101500|ref|YP_004177092.1| - 3.7e-08 33.6 0.0 7e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|320101500|ref|YP_004177092.1| - 0.00041 20.1 0.0 0.00081 19.2 0.0 1.6 1 1 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|320101500|ref|YP_004177092.1| - 0.00053 19.8 0.1 0.0016 18.3 0.1 1.8 1 1 1 2 2 2 1 KH domain SBDS PF01172.18 gi|320101501|ref|YP_004177093.1| - 1e-20 73.5 0.0 1.7e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|320101501|ref|YP_004177093.1| - 6.1e-19 68.1 0.3 8.4e-19 67.7 0.3 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|320101501|ref|YP_004177093.1| - 0.13 12.3 0.0 0.35 10.9 0.0 1.6 1 0 0 1 1 1 0 Elongation factor G C-terminus Proteasome PF00227.26 gi|320101502|ref|YP_004177094.1| - 1.7e-54 184.2 0.1 2.1e-54 183.9 0.1 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|320101502|ref|YP_004177094.1| - 1.1e-14 53.8 0.4 1.1e-14 53.8 0.4 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|320101503|ref|YP_004177095.1| - 7.2e-10 39.0 0.0 1.3e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.16 gi|320101504|ref|YP_004177096.1| - 9.1e-05 22.0 0.0 0.00015 21.3 0.0 1.4 1 1 0 1 1 1 1 RNase P subunit p30 HeH PF12949.7 gi|320101504|ref|YP_004177096.1| - 0.022 14.4 0.3 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 HeH/LEM domain RNA_binding PF01877.17 gi|320101505|ref|YP_004177097.1| - 4.7e-31 107.5 0.0 5.8e-31 107.2 0.0 1.1 1 0 0 1 1 1 1 RNA binding Rtt106_N PF18215.1 gi|320101505|ref|YP_004177097.1| - 0.046 13.5 0.1 0.086 12.6 0.1 1.5 1 0 0 1 1 1 0 Histone chaperone Rtt106 N-terminal domain Ribosomal_L15e PF00827.17 gi|320101506|ref|YP_004177098.1| - 3.4e-81 271.6 0.9 3.4e-81 271.6 0.9 1.6 1 1 1 2 2 2 1 Ribosomal L15 Rpn9_C PF18261.1 gi|320101506|ref|YP_004177098.1| - 0.018 14.6 0.1 0.04 13.5 0.1 1.5 1 0 0 1 1 1 0 Rpn9 C-terminal helix MMR_HSR1_C PF08438.10 gi|320101507|ref|YP_004177099.1| - 3.7e-35 120.9 0.0 1.2e-34 119.3 0.0 1.8 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|320101507|ref|YP_004177099.1| - 6.4e-22 77.8 0.0 1.8e-21 76.4 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|320101507|ref|YP_004177099.1| - 1e-12 47.9 0.0 2.5e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|320101507|ref|YP_004177099.1| - 1.4e-08 34.4 0.3 3.4e-06 26.7 0.1 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|320101507|ref|YP_004177099.1| - 0.0058 16.2 0.1 4.3 6.8 0.0 3.0 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|320101507|ref|YP_004177099.1| - 0.14 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Peripla_BP_6 PF13458.6 gi|320101507|ref|YP_004177099.1| - 0.22 11.2 0.0 0.87 9.2 0.0 1.8 1 1 0 1 1 1 0 Periplasmic binding protein DUF2095 PF09868.9 gi|320101508|ref|YP_004177100.1| - 8.4e-19 67.8 0.1 1.5e-17 63.8 0.1 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) ORF6C PF10552.9 gi|320101508|ref|YP_004177100.1| - 0.077 13.1 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 ORF6C domain AP_endonuc_2 PF01261.24 gi|320101508|ref|YP_004177100.1| - 0.12 11.8 0.0 0.15 11.4 0.0 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel NTP_transferase PF00483.23 gi|320101509|ref|YP_004177101.1| - 1.1e-29 103.8 0.0 1.5e-29 103.3 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|320101509|ref|YP_004177101.1| - 3.4e-15 55.1 14.9 4.3e-07 29.4 0.2 5.4 3 2 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|320101509|ref|YP_004177101.1| - 1.2e-13 51.7 0.0 1.7e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|320101509|ref|YP_004177101.1| - 0.00015 21.6 0.0 0.00023 21.0 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|320101509|ref|YP_004177101.1| - 0.016 14.9 10.2 0.92 9.3 0.1 4.3 3 2 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|320101509|ref|YP_004177101.1| - 0.058 11.5 0.2 0.098 10.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Ribosomal_S3Ae PF01015.18 gi|320101510|ref|YP_004177102.1| - 2.4e-68 229.7 1.7 2.9e-68 229.5 1.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Abhydro_lipase PF04083.16 gi|320101510|ref|YP_004177102.1| - 0.042 13.4 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region S-l_SbsC_C PF18316.1 gi|320101510|ref|YP_004177102.1| - 0.11 13.0 0.0 0.26 11.8 0.0 1.7 1 0 0 1 1 1 0 S-layer protein SbsC C-terminal domain Post_transc_reg PF13797.6 gi|320101510|ref|YP_004177102.1| - 0.87 9.5 3.7 7.5 6.5 0.0 2.7 3 0 0 3 3 3 0 Post-transcriptional regulator Arg_tRNA_synt_N PF03485.16 gi|320101512|ref|YP_004177104.1| - 0.019 15.6 0.0 0.035 14.7 0.0 1.4 1 0 0 1 1 1 0 Arginyl tRNA synthetase N terminal domain DUF3334 PF11813.8 gi|320101512|ref|YP_004177104.1| - 0.082 12.6 0.3 0.65 9.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3334) Ribosomal_S13_N PF08069.12 gi|320101513|ref|YP_004177105.1| - 7.8e-24 83.5 0.0 1.8e-23 82.4 0.0 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|320101513|ref|YP_004177105.1| - 1.7e-17 63.4 0.2 2.5e-17 62.8 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Ham1p_like PF01725.16 gi|320101514|ref|YP_004177106.1| - 7.7e-41 140.1 0.0 8.7e-41 139.9 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RIO1 PF01163.22 gi|320101515|ref|YP_004177107.1| - 1.2e-12 47.9 0.0 1.6e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|320101515|ref|YP_004177107.1| - 1.7e-11 44.5 0.1 8.4e-05 22.6 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|320101515|ref|YP_004177107.1| - 2.6e-09 36.8 0.0 3e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|320101515|ref|YP_004177107.1| - 8e-07 28.6 0.0 1.8e-06 27.5 0.0 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 gi|320101515|ref|YP_004177107.1| - 8.3e-06 25.3 0.0 1e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase DUF3990 PF13151.6 gi|320101515|ref|YP_004177107.1| - 0.17 11.6 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3990) YukC PF10140.9 gi|320101515|ref|YP_004177107.1| - 0.2 10.5 0.0 0.29 9.9 0.0 1.1 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukC Peptidase_M22 PF00814.25 gi|320101516|ref|YP_004177108.1| - 1.2e-70 238.4 0.0 1.4e-70 238.1 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.19 gi|320101517|ref|YP_004177109.1| - 5.3e-16 58.5 4.0 5.9e-16 58.4 4.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37ae PF01780.19 gi|320101517|ref|YP_004177109.1| - 0.0055 16.8 1.6 0.0059 16.7 1.6 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family RNA_POL_M_15KD PF02150.16 gi|320101517|ref|YP_004177109.1| - 0.0087 15.9 1.2 0.019 14.9 1.2 1.6 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|320101517|ref|YP_004177109.1| - 0.01 15.8 3.2 0.013 15.5 3.2 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-piccolo PF05715.13 gi|320101517|ref|YP_004177109.1| - 0.012 15.7 0.4 0.014 15.6 0.4 1.1 1 0 0 1 1 1 0 Piccolo Zn-finger OrfB_Zn_ribbon PF07282.11 gi|320101517|ref|YP_004177109.1| - 0.016 15.1 0.8 0.017 15.0 0.8 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|320101517|ref|YP_004177109.1| - 0.023 14.4 3.0 0.42 10.4 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF1451 PF07295.11 gi|320101517|ref|YP_004177109.1| - 0.054 13.5 1.2 0.056 13.5 1.2 1.0 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-ribbon_3 PF13248.6 gi|320101517|ref|YP_004177109.1| - 0.068 12.6 3.9 0.073 12.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.10 gi|320101517|ref|YP_004177109.1| - 0.075 13.2 1.8 0.1 12.7 1.8 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DpnI PF06044.12 gi|320101517|ref|YP_004177109.1| - 0.082 12.5 0.8 0.079 12.6 0.8 1.1 1 0 0 1 1 1 0 Dam-replacing family Nudix_N_2 PF14803.6 gi|320101517|ref|YP_004177109.1| - 0.11 12.4 5.5 0.7 9.9 5.5 2.0 1 1 0 1 1 1 0 Nudix N-terminal zf_C2H2_10 PF18414.1 gi|320101517|ref|YP_004177109.1| - 0.21 11.1 3.6 4.4 6.9 0.5 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger Ribosomal_S24e PF01282.19 gi|320101518|ref|YP_004177110.1| - 1.1e-20 73.4 0.1 1.4e-20 73.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.12 gi|320101519|ref|YP_004177111.1| - 7.3e-14 51.5 0.0 1.4e-13 50.6 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.13 gi|320101520|ref|YP_004177112.1| - 7.6e-15 54.8 0.2 9e-15 54.5 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zinc_ribbon_2 PF13240.6 gi|320101520|ref|YP_004177112.1| - 0.00052 19.6 1.3 0.00075 19.1 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|320101520|ref|YP_004177112.1| - 0.0015 18.5 2.1 0.002 18.1 2.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|320101520|ref|YP_004177112.1| - 0.002 18.0 2.2 0.0029 17.5 2.2 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_15 PF17032.5 gi|320101520|ref|YP_004177112.1| - 0.0077 17.0 1.5 0.01 16.6 1.5 1.2 1 0 0 1 1 1 1 zinc-ribbon family HypA PF01155.19 gi|320101520|ref|YP_004177112.1| - 0.0079 16.2 0.4 0.01 15.9 0.4 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C4H2 PF10146.9 gi|320101520|ref|YP_004177112.1| - 0.0084 16.4 1.9 0.0098 16.2 1.9 1.1 1 0 0 1 1 1 1 Zinc finger-containing protein TackOD1 PF18551.1 gi|320101520|ref|YP_004177112.1| - 0.012 15.3 1.2 0.015 15.0 1.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 UPF0547 PF10571.9 gi|320101520|ref|YP_004177112.1| - 0.013 15.5 4.6 0.02 15.0 4.6 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-RRN7 PF11781.8 gi|320101520|ref|YP_004177112.1| - 0.029 14.0 1.5 0.053 13.2 0.1 1.9 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|320101520|ref|YP_004177112.1| - 0.09 12.3 0.9 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding NRDD PF13597.6 gi|320101520|ref|YP_004177112.1| - 0.11 11.3 0.2 0.098 11.4 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|320101520|ref|YP_004177112.1| - 0.28 11.3 4.4 3.5 7.8 3.8 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|320101520|ref|YP_004177112.1| - 0.3 10.6 3.4 0.55 9.7 3.4 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|320101520|ref|YP_004177112.1| - 1.3 9.3 4.4 0.67 10.3 0.4 2.0 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Zn_Tnp_IS1595 PF12760.7 gi|320101520|ref|YP_004177112.1| - 2.6 8.1 6.1 19 5.4 5.1 2.3 2 1 1 3 3 3 0 Transposase zinc-ribbon domain SHS2_Rpb7-N PF03876.17 gi|320101521|ref|YP_004177113.1| - 1.6e-14 54.0 0.1 6.8e-14 52.0 0.0 1.9 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|320101521|ref|YP_004177113.1| - 2.2e-09 37.5 1.4 2.2e-09 37.5 1.4 1.9 2 1 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|320101521|ref|YP_004177113.1| - 0.0015 18.8 0.0 0.0023 18.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|320101522|ref|YP_004177114.1| - 5.3e-25 88.0 0.2 6.1e-25 87.8 0.2 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|320101522|ref|YP_004177114.1| - 6.4e-05 23.3 0.0 8.8e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN PF01850.21 gi|320101522|ref|YP_004177114.1| - 0.0018 18.8 0.1 0.004 17.7 0.1 1.5 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|320101522|ref|YP_004177114.1| - 0.0033 17.2 0.0 0.0053 16.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) LEM PF03020.15 gi|320101522|ref|YP_004177114.1| - 0.025 14.1 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 LEM domain PIN_4 PF13638.6 gi|320101522|ref|YP_004177114.1| - 0.045 14.0 0.0 0.21 11.9 0.0 2.0 1 1 0 1 1 1 0 PIN domain GTP_EFTU PF00009.27 gi|320101523|ref|YP_004177115.1| - 1.4e-32 112.9 0.7 8e-32 110.3 0.7 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|320101523|ref|YP_004177115.1| - 6.4e-28 96.8 0.4 6.4e-28 96.8 0.4 1.9 2 0 0 2 2 2 1 Initiation factor eIF2 gamma, C terminal PduV-EutP PF10662.9 gi|320101523|ref|YP_004177115.1| - 4.2e-05 23.3 0.9 0.095 12.4 0.1 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|320101523|ref|YP_004177115.1| - 7.6e-05 22.7 0.6 0.0013 18.7 0.1 2.4 2 0 0 2 2 2 1 RsgA GTPase GTP_EFTU_D2 PF03144.25 gi|320101523|ref|YP_004177115.1| - 8.7e-05 22.8 1.9 0.00021 21.6 1.2 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|320101523|ref|YP_004177115.1| - 0.00013 22.0 0.0 0.00027 21.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|320101523|ref|YP_004177115.1| - 0.016 15.2 0.1 0.031 14.3 0.1 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|320101523|ref|YP_004177115.1| - 0.017 14.7 1.5 3.8 7.0 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B MeaB PF03308.16 gi|320101523|ref|YP_004177115.1| - 0.03 13.3 1.0 0.19 10.7 0.1 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|320101523|ref|YP_004177115.1| - 0.15 11.7 0.2 6.9 6.2 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Ribosomal_S6e PF01092.19 gi|320101524|ref|YP_004177116.1| - 1.4e-32 112.3 0.1 3.8e-32 110.9 0.0 1.8 2 1 0 2 2 2 1 Ribosomal protein S6e GTP_EFTU_D4 PF14578.6 gi|320101525|ref|YP_004177117.1| - 2.5e-37 126.6 3.0 6.4e-37 125.3 3.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|320101525|ref|YP_004177117.1| - 1.5e-31 109.4 0.0 2.3e-30 105.6 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|320101525|ref|YP_004177117.1| - 1.7e-20 73.1 0.1 4.4e-20 71.8 0.1 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|320101525|ref|YP_004177117.1| - 4e-12 46.3 1.8 5.2e-11 42.8 0.0 2.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|320101525|ref|YP_004177117.1| - 6.8e-07 29.4 0.1 2.5e-06 27.6 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|320101525|ref|YP_004177117.1| - 0.0061 16.8 0.0 0.03 14.6 0.0 2.2 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|320101525|ref|YP_004177117.1| - 0.0091 16.1 0.0 0.12 12.4 0.0 2.6 3 0 0 3 3 3 1 Dynamin family Arf PF00025.21 gi|320101525|ref|YP_004177117.1| - 0.013 15.0 0.0 5.4 6.4 0.0 3.0 3 0 0 3 3 3 0 ADP-ribosylation factor family Ras PF00071.22 gi|320101525|ref|YP_004177117.1| - 0.015 14.9 0.0 0.13 11.8 0.0 2.3 2 0 0 2 2 2 0 Ras family ATP_bind_1 PF03029.17 gi|320101525|ref|YP_004177117.1| - 0.02 14.7 0.0 0.079 12.7 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|320101525|ref|YP_004177117.1| - 0.066 13.5 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|320101525|ref|YP_004177117.1| - 0.069 13.1 0.4 4.6 7.1 0.0 3.0 3 1 1 4 4 4 0 RsgA GTPase Ribosomal_L24e PF01246.20 gi|320101526|ref|YP_004177118.1| - 2e-23 82.4 1.2 2.2e-23 82.3 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|320101526|ref|YP_004177118.1| - 3.3e-06 26.9 1.0 3.3e-06 26.9 1.0 1.4 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|320101526|ref|YP_004177118.1| - 0.0011 19.0 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 YHS domain DUF2116 PF09889.9 gi|320101526|ref|YP_004177118.1| - 0.0092 15.9 2.4 0.47 10.5 0.2 2.1 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) VATC PF18716.1 gi|320101526|ref|YP_004177118.1| - 0.015 15.1 4.2 0.25 11.3 4.2 2.0 1 1 0 1 1 1 0 Vms1-associating treble clef domain NosL PF05573.12 gi|320101526|ref|YP_004177118.1| - 0.016 15.6 0.1 0.016 15.5 0.1 1.1 1 0 0 1 1 1 0 NosL zf-FLZ PF04570.14 gi|320101526|ref|YP_004177118.1| - 0.027 13.9 0.3 0.045 13.2 0.3 1.4 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 SOBP PF15279.6 gi|320101526|ref|YP_004177118.1| - 0.031 14.9 0.3 0.037 14.6 0.3 1.1 1 0 0 1 1 1 0 Sine oculis-binding protein Baculo_RING PF05883.11 gi|320101526|ref|YP_004177118.1| - 0.055 13.5 0.1 0.065 13.2 0.1 1.1 1 0 0 1 1 1 0 Baculovirus U-box/Ring-like domain Ribosomal_S28e PF01200.18 gi|320101527|ref|YP_004177119.1| - 2.6e-30 104.2 5.1 3.7e-30 103.7 5.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|320101528|ref|YP_004177120.1| - 6.4e-32 109.2 1.5 8.3e-32 108.8 1.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|320101528|ref|YP_004177120.1| - 4.4e-05 23.3 0.2 8.3e-05 22.4 0.2 1.6 1 1 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|320101528|ref|YP_004177120.1| - 0.0044 17.1 0.0 0.005 16.9 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 tRNA-synt_1c PF00749.21 gi|320101529|ref|YP_004177121.1| - 1.5e-75 254.0 0.0 2.4e-75 253.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|320101529|ref|YP_004177121.1| - 1.1e-19 70.9 0.0 2.4e-19 69.8 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain API5 PF05918.11 gi|320101529|ref|YP_004177121.1| - 0.13 11.1 0.2 0.19 10.5 0.2 1.1 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) KMP11 PF03037.16 gi|320101529|ref|YP_004177121.1| - 0.26 12.1 0.6 4.3 8.2 0.1 2.9 3 0 0 3 3 3 0 Kinetoplastid membrane protein 11 DUF2118 PF09891.9 gi|320101530|ref|YP_004177122.1| - 7.1e-15 55.3 0.2 8.1e-15 55.1 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) DTW PF03942.15 gi|320101530|ref|YP_004177122.1| - 0.093 12.4 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 DTW domain FMN_dh PF01070.18 gi|320101531|ref|YP_004177123.1| - 7.5e-17 61.4 0.0 1.7e-15 56.9 0.0 2.3 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|320101531|ref|YP_004177123.1| - 0.057 12.5 0.0 0.094 11.8 0.0 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase Memo PF01875.17 gi|320101532|ref|YP_004177124.1| - 4.6e-76 255.5 0.0 5.3e-76 255.3 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|320101532|ref|YP_004177124.1| - 1.2e-05 24.6 0.1 2.1e-05 23.7 0.1 1.4 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase ABC_transp_aux PF09822.9 gi|320101532|ref|YP_004177124.1| - 0.027 13.9 0.0 0.037 13.5 0.0 1.1 1 0 0 1 1 1 0 ABC-type uncharacterized transport system Ribosomal_S2 PF00318.20 gi|320101533|ref|YP_004177125.1| - 1.3e-24 86.7 0.0 3.3e-15 55.9 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.6 gi|320101533|ref|YP_004177125.1| - 0.053 13.1 0.3 0.16 11.5 0.3 1.6 2 0 0 2 2 2 0 Periplasmic binding protein domain BRCT_3 PF18428.1 gi|320101533|ref|YP_004177125.1| - 0.17 12.0 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain RNA_pol_N PF01194.17 gi|320101534|ref|YP_004177126.1| - 3.8e-30 104.0 0.2 4.2e-30 103.8 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|320101534|ref|YP_004177126.1| - 0.00074 19.7 0.0 0.00099 19.3 0.0 1.2 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) FYRN PF05964.14 gi|320101534|ref|YP_004177126.1| - 0.026 14.4 1.4 0.04 13.8 1.4 1.4 1 0 0 1 1 1 0 F/Y-rich N-terminus Ribosomal_S9 PF00380.19 gi|320101535|ref|YP_004177127.1| - 1.6e-34 119.0 0.0 1.9e-34 118.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|320101536|ref|YP_004177128.1| - 1.4e-10 41.5 1.5 3.1e-08 33.9 1.5 2.4 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|320101537|ref|YP_004177129.1| - 2.5e-09 36.8 0.1 2.8e-09 36.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|320101537|ref|YP_004177129.1| - 3e-07 31.2 0.0 4.8e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|320101538|ref|YP_004177130.1| - 4.9e-29 101.0 0.0 1e-28 99.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|320101538|ref|YP_004177130.1| - 2.4e-14 52.5 0.0 3.2e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.6 gi|320101538|ref|YP_004177130.1| - 3.1e-06 27.2 8.0 7.5e-06 26.0 8.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|320101538|ref|YP_004177130.1| - 6.8e-06 26.6 13.0 0.00018 22.0 11.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|320101538|ref|YP_004177130.1| - 2.2e-05 24.1 12.2 0.0018 18.0 2.4 3.2 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|320101538|ref|YP_004177130.1| - 6.2e-05 22.9 13.1 0.00092 19.2 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|320101538|ref|YP_004177130.1| - 0.00013 22.0 10.9 0.00013 22.0 10.9 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|320101538|ref|YP_004177130.1| - 0.00015 22.2 3.6 0.11 13.0 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|320101538|ref|YP_004177130.1| - 0.0015 18.7 10.7 0.0058 16.7 10.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|320101538|ref|YP_004177130.1| - 0.0052 17.7 11.5 0.57 11.2 1.9 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|320101538|ref|YP_004177130.1| - 0.034 14.6 12.8 0.6 10.6 2.5 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|320101538|ref|YP_004177130.1| - 0.15 13.1 16.7 0.4 11.7 4.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|320101538|ref|YP_004177130.1| - 0.18 12.4 12.1 0.84 10.3 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|320101538|ref|YP_004177130.1| - 0.18 12.0 13.3 0.48 10.6 3.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|320101538|ref|YP_004177130.1| - 0.83 9.9 7.3 5.2 7.3 0.7 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain RLI PF04068.15 gi|320101538|ref|YP_004177130.1| - 1.3 8.9 6.4 0.42 10.5 0.9 2.4 2 0 0 2 2 2 0 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_13 PF13370.6 gi|320101538|ref|YP_004177130.1| - 5.1 7.7 11.9 2 9.0 1.4 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Ribosomal_S11 PF00411.19 gi|320101539|ref|YP_004177131.1| - 2.2e-48 163.3 2.0 2.7e-48 162.9 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|320101540|ref|YP_004177132.1| - 2.1e-14 52.9 0.3 5.2e-14 51.7 0.3 1.6 1 0 0 1 1 1 1 S4 domain TyrRSs_C PF16714.5 gi|320101540|ref|YP_004177132.1| - 0.081 12.7 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain YlaH PF14036.6 gi|320101540|ref|YP_004177132.1| - 0.14 12.5 0.0 0.85 10.0 0.0 2.0 2 0 0 2 2 2 0 YlaH-like protein Ribosomal_S13 PF00416.22 gi|320101541|ref|YP_004177133.1| - 9.9e-40 135.9 0.0 1.2e-39 135.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 Ribosomal_S10 PF00338.22 gi|320101542|ref|YP_004177134.1| - 2e-24 85.6 0.2 2.3e-24 85.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|320101542|ref|YP_004177134.1| - 0.028 15.2 0.1 0.069 14.0 0.0 1.6 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|320101543|ref|YP_004177135.1| - 1.6e-54 184.4 0.0 2.6e-54 183.7 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|320101543|ref|YP_004177135.1| - 7.2e-37 126.1 0.4 3.2e-36 124.0 0.1 2.3 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|320101543|ref|YP_004177135.1| - 2.4e-15 56.7 2.9 5.2e-15 55.6 2.9 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|320101543|ref|YP_004177135.1| - 5.1e-05 23.3 0.0 0.00045 20.3 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|320101543|ref|YP_004177135.1| - 0.0043 16.9 2.7 0.0043 16.9 2.7 2.5 3 0 0 3 3 3 1 Elongation factor Tu domain 4 Dynamin_N PF00350.23 gi|320101543|ref|YP_004177135.1| - 0.054 13.5 0.0 9.5 6.2 0.0 2.5 1 1 1 2 2 2 0 Dynamin family PduV-EutP PF10662.9 gi|320101543|ref|YP_004177135.1| - 0.093 12.5 0.1 5.6 6.7 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|320101543|ref|YP_004177135.1| - 0.11 12.0 0.1 0.41 10.1 0.0 1.9 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit Ribosomal_S7 PF00177.21 gi|320101544|ref|YP_004177136.1| - 3e-43 147.0 0.3 3.8e-43 146.7 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.25 gi|320101545|ref|YP_004177137.1| - 2.8e-45 152.6 0.2 3.5e-45 152.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|320101546|ref|YP_004177138.1| - 1.8e-14 53.3 1.8 1.9e-08 34.0 0.2 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|320101546|ref|YP_004177138.1| - 2.3e-13 50.0 1.1 1.1e-11 44.6 0.2 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|320101546|ref|YP_004177138.1| - 1e-08 34.9 0.1 0.0012 18.7 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|320101546|ref|YP_004177138.1| - 0.00084 19.1 0.3 0.28 11.1 0.0 2.8 3 0 0 3 3 3 2 KH domain Ribosomal_L7Ae PF01248.26 gi|320101547|ref|YP_004177139.1| - 5.4e-19 67.7 0.0 6.6e-19 67.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF2274 PF10038.9 gi|320101547|ref|YP_004177139.1| - 0.14 12.6 0.0 0.23 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2274) RNA_pol_Rpb1_5 PF04998.17 gi|320101548|ref|YP_004177140.1| - 4.3e-55 187.0 0.3 5.5e-55 186.7 0.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 IF2_N PF04760.15 gi|320101548|ref|YP_004177140.1| - 0.087 12.7 0.2 1.9 8.4 0.1 3.0 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region DUF348 PF03990.14 gi|320101548|ref|YP_004177140.1| - 0.89 9.4 3.8 43 4.0 0.0 3.5 3 0 0 3 3 3 0 G5-linked-Ubiquitin-like domain RNA_pol_Rpb1_1 PF04997.12 gi|320101549|ref|YP_004177141.1| - 1.2e-98 330.4 0.0 1.5e-98 330.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|320101549|ref|YP_004177141.1| - 1.3e-73 246.7 0.0 2.1e-73 246.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|320101549|ref|YP_004177141.1| - 4.1e-38 130.8 0.0 7.9e-38 129.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|320101549|ref|YP_004177141.1| - 1.2e-26 92.8 0.0 2.4e-26 91.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|320101549|ref|YP_004177141.1| - 6.7e-26 91.3 0.0 1.2e-25 90.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.6 gi|320101549|ref|YP_004177141.1| - 0.33 10.4 6.4 1.8 8.1 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|320101549|ref|YP_004177141.1| - 0.47 10.6 2.4 13 6.0 0.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|320101549|ref|YP_004177141.1| - 1.4 8.8 5.8 16 5.4 0.2 3.4 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS RNA_pol_Rpb2_6 PF00562.28 gi|320101550|ref|YP_004177142.1| - 9.4e-134 446.3 0.2 1.8e-133 445.4 0.0 1.5 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|320101550|ref|YP_004177142.1| - 3.4e-46 157.3 0.1 4.7e-46 156.9 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 gi|320101550|ref|YP_004177142.1| - 1e-27 96.3 0.1 1.9e-27 95.5 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|320101550|ref|YP_004177142.1| - 1.8e-26 92.1 0.0 4.8e-26 90.7 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|320101550|ref|YP_004177142.1| - 2.3e-25 89.3 0.1 1.5e-24 86.7 0.1 2.2 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_4 PF04566.13 gi|320101550|ref|YP_004177142.1| - 6.9e-22 77.5 1.3 2.1e-21 76.0 1.3 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|320101550|ref|YP_004177142.1| - 4.7e-08 33.5 0.1 1.5e-07 31.9 0.1 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb5_C PF01191.19 gi|320101551|ref|YP_004177143.1| - 1.9e-33 114.1 0.0 2.2e-33 113.9 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain GreA_GreB PF01272.19 gi|320101551|ref|YP_004177143.1| - 0.11 12.4 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Transcription elongation factor, GreA/GreB, C-term ABC_tran PF00005.27 gi|320101552|ref|YP_004177144.1| - 2e-28 99.6 0.0 3.1e-28 99.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|320101552|ref|YP_004177144.1| - 4.5e-08 33.3 0.6 0.0025 17.7 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|320101552|ref|YP_004177144.1| - 0.0006 19.3 0.1 0.097 12.1 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|320101552|ref|YP_004177144.1| - 0.00083 19.8 0.0 0.001 19.5 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|320101552|ref|YP_004177144.1| - 0.0011 19.4 0.1 0.0063 16.9 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|320101552|ref|YP_004177144.1| - 0.0016 18.4 0.0 0.0027 17.6 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|320101552|ref|YP_004177144.1| - 0.0021 18.0 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|320101552|ref|YP_004177144.1| - 0.0028 18.2 0.2 0.0046 17.5 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|320101552|ref|YP_004177144.1| - 0.0075 16.0 0.2 0.015 15.0 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|320101552|ref|YP_004177144.1| - 0.011 14.9 0.1 0.024 13.8 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|320101552|ref|YP_004177144.1| - 0.017 15.4 0.1 0.029 14.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|320101552|ref|YP_004177144.1| - 0.032 13.9 0.1 0.039 13.7 0.1 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|320101552|ref|YP_004177144.1| - 0.046 14.0 0.1 0.097 12.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|320101552|ref|YP_004177144.1| - 0.049 13.5 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|320101552|ref|YP_004177144.1| - 0.056 13.4 0.0 0.091 12.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.9 gi|320101552|ref|YP_004177144.1| - 0.084 11.7 0.3 1.3 7.7 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.6 gi|320101552|ref|YP_004177144.1| - 0.095 13.2 0.1 0.18 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|320101552|ref|YP_004177144.1| - 0.13 12.7 0.1 0.24 11.8 0.1 1.5 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|320101552|ref|YP_004177144.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Cytidylate_kin PF02224.18 gi|320101552|ref|YP_004177144.1| - 0.14 11.9 0.7 0.26 11.0 0.4 1.6 2 0 0 2 2 2 0 Cytidylate kinase BPD_transp_1 PF00528.22 gi|320101553|ref|YP_004177145.1| - 6e-23 81.5 47.7 8.8e-14 51.7 18.1 3.1 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Glyco_tran_WbsX PF14307.6 gi|320101553|ref|YP_004177145.1| - 0.3 10.5 0.0 0.46 9.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase WbsX AAA_assoc_C PF09821.9 gi|320101554|ref|YP_004177146.1| - 6.8e-16 58.9 0.0 8.4e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 C-terminal AAA-associated domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_mucosus_DSM_2162_uid62227/NC_014961.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_mucosus_DSM_2162_uid62227/NC_014961.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_mucosus_DSM_2162_uid62227/NC_014961.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_mucosus_DSM_2162_uid62227/NC_014961.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 10:59:24 2019 # [ok]