# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DAO PF01266.24 gi|218883316|ref|YP_002427698.1| - 1.5e-05 24.8 0.1 0.039 13.5 0.0 2.1 1 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|218883316|ref|YP_002427698.1| - 0.023 14.0 0.0 0.044 13.0 0.0 1.4 1 0 0 1 1 1 0 Thi4 family FAD_binding_3 PF01494.19 gi|218883316|ref|YP_002427698.1| - 0.031 13.5 0.0 0.35 10.1 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.12 gi|218883316|ref|YP_002427698.1| - 0.18 10.8 0.0 15 4.5 0.4 2.2 2 1 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|218883316|ref|YP_002427698.1| - 0.19 10.9 0.0 0.6 9.3 0.0 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AdoMet_dc PF02675.15 gi|218883317|ref|YP_002427699.1| - 1.2e-32 112.3 0.0 1.4e-32 112.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DUF4222 PF13973.6 gi|218883318|ref|YP_002427700.1| - 0.082 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4222) GNAT_acetyltran PF12746.7 gi|218883318|ref|YP_002427700.1| - 0.12 11.9 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase UPF0051 PF01458.17 gi|218883319|ref|YP_002427701.1| - 1.9e-17 63.7 0.0 2.4e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|218883320|ref|YP_002427702.1| - 3.5e-63 213.2 0.4 4.4e-63 212.9 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|218883321|ref|YP_002427703.1| - 8.3e-20 71.7 0.0 1.1e-19 71.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883321|ref|YP_002427703.1| - 2.7e-11 43.8 0.1 2.3e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218883321|ref|YP_002427703.1| - 8.5e-10 38.4 0.0 1.3e-08 34.5 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|218883321|ref|YP_002427703.1| - 2.4e-05 24.2 0.0 0.0041 16.9 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|218883321|ref|YP_002427703.1| - 6.6e-05 22.6 0.1 0.00015 21.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|218883321|ref|YP_002427703.1| - 0.0022 18.5 0.2 0.0037 17.8 0.2 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|218883321|ref|YP_002427703.1| - 0.0084 16.0 0.1 0.013 15.4 0.1 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|218883321|ref|YP_002427703.1| - 0.017 15.5 0.0 0.075 13.5 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|218883321|ref|YP_002427703.1| - 0.02 13.6 0.1 1.2 7.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|218883321|ref|YP_002427703.1| - 0.039 13.9 0.6 1.1 9.2 0.0 2.5 1 1 2 3 3 3 0 NACHT domain AAA_16 PF13191.6 gi|218883321|ref|YP_002427703.1| - 0.084 13.3 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|218883321|ref|YP_002427703.1| - 0.22 11.1 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|218883321|ref|YP_002427703.1| - 0.24 11.7 0.6 0.44 10.8 0.2 1.8 2 1 0 2 2 2 0 AAA domain AA_kinase PF00696.28 gi|218883322|ref|YP_002427704.1| - 2.1e-28 99.5 0.0 4.2e-28 98.5 0.0 1.5 1 1 0 1 1 1 1 Amino acid kinase family Qn_am_d_aIV PF09100.10 gi|218883322|ref|YP_002427704.1| - 0.061 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain IV CBS PF00571.28 gi|218883322|ref|YP_002427704.1| - 0.16 12.5 0.5 16 6.1 0.0 2.6 2 0 0 2 2 2 0 CBS domain EamA PF00892.20 gi|218883323|ref|YP_002427705.1| - 3.2e-23 82.4 47.5 2e-12 47.4 21.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family Amidohydro_1 PF01979.20 gi|218883324|ref|YP_002427706.1| - 2.3e-45 155.4 0.0 2.7e-45 155.2 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|218883324|ref|YP_002427706.1| - 2.1e-15 57.2 0.0 2.4e-13 50.4 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Trm112p PF03966.16 gi|218883325|ref|YP_002427707.1| - 1.2e-06 29.0 0.5 1.9e-06 28.4 0.5 1.4 1 0 0 1 1 1 1 Trm112p-like protein zf-RING_7 PF02591.15 gi|218883325|ref|YP_002427707.1| - 0.018 15.2 0.6 3.4 7.9 0.0 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|218883325|ref|YP_002427707.1| - 0.041 14.0 0.9 0.066 13.4 0.9 1.6 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2_4 PF13894.6 gi|218883325|ref|YP_002427707.1| - 4.5 8.4 0.0 4.5 8.4 0.0 3.5 5 0 0 5 5 5 0 C2H2-type zinc finger PGM_PMM_I PF02878.16 gi|218883326|ref|YP_002427708.1| - 1.7e-44 150.9 0.0 3e-44 150.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|218883326|ref|YP_002427708.1| - 1.8e-23 83.1 0.0 4.4e-23 81.9 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|218883326|ref|YP_002427708.1| - 6.2e-22 77.9 0.0 1.1e-21 77.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|218883326|ref|YP_002427708.1| - 5.8e-13 48.8 0.1 1.4e-12 47.6 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF3107 PF11305.8 gi|218883327|ref|YP_002427709.1| - 0.0046 17.2 0.1 0.008 16.4 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3107) MMR_HSR1_Xtn PF16897.5 gi|218883329|ref|YP_002427711.1| - 4.7e-21 74.8 0.0 1.5e-19 70.0 0.0 2.3 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain TGS PF02824.21 gi|218883329|ref|YP_002427711.1| - 9.9e-19 67.2 0.0 1.8e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|218883329|ref|YP_002427711.1| - 3.6e-15 56.0 0.0 8.6e-15 54.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|218883329|ref|YP_002427711.1| - 6.2e-10 38.8 0.0 6.5e-09 35.5 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|218883329|ref|YP_002427711.1| - 1.2e-06 28.2 0.0 0.0027 17.3 0.0 3.6 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.13 gi|218883329|ref|YP_002427711.1| - 8.2e-05 22.7 0.4 0.012 15.8 0.4 2.7 1 1 0 1 1 1 1 Protein of unknown function (DUF933) RsgA_GTPase PF03193.16 gi|218883329|ref|YP_002427711.1| - 0.00013 21.9 0.0 0.19 11.6 0.0 2.6 3 0 0 3 3 3 2 RsgA GTPase SRPRB PF09439.10 gi|218883329|ref|YP_002427711.1| - 0.0029 17.1 0.0 0.006 16.0 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Mg_chelatase PF01078.21 gi|218883329|ref|YP_002427711.1| - 0.032 13.6 0.0 0.08 12.3 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Dynamin_N PF00350.23 gi|218883329|ref|YP_002427711.1| - 0.047 13.7 0.0 0.47 10.5 0.0 2.5 3 0 0 3 3 3 0 Dynamin family AAA_22 PF13401.6 gi|218883329|ref|YP_002427711.1| - 0.088 13.1 0.0 0.23 11.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|218883329|ref|YP_002427711.1| - 0.12 12.5 0.0 0.35 11.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain MerR-DNA-bind PF09278.11 gi|218883329|ref|YP_002427711.1| - 0.17 12.4 0.6 32 5.2 0.0 3.1 3 0 0 3 3 3 0 MerR, DNA binding RNase_HII PF01351.18 gi|218883330|ref|YP_002427712.1| - 4.7e-32 111.4 0.0 5.5e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII DUF2153 PF09921.9 gi|218883331|ref|YP_002427713.1| - 1.7e-44 150.6 2.6 2e-44 150.4 2.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) tRNA_NucTran2_2 PF13735.6 gi|218883333|ref|YP_002427715.1| - 0.079 12.9 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 tRNA nucleotidyltransferase domain 2 putative TIP49 PF06068.13 gi|218883334|ref|YP_002427716.1| - 3.5e-141 470.5 0.3 4.9e-141 470.0 0.3 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|218883334|ref|YP_002427716.1| - 1e-25 89.6 3.2 1.2e-25 89.4 1.1 2.3 3 0 0 3 3 1 1 TIP49 AAA-lid domain AAA PF00004.29 gi|218883334|ref|YP_002427716.1| - 3.5e-12 46.9 3.3 4.5e-09 36.8 0.1 3.0 4 0 0 4 4 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|218883334|ref|YP_002427716.1| - 4.3e-09 36.3 0.5 1.3e-06 28.2 0.1 2.9 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|218883334|ref|YP_002427716.1| - 1.3e-06 28.8 0.1 0.0061 16.8 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|218883334|ref|YP_002427716.1| - 1.7e-06 28.5 3.0 1.2e-05 25.8 1.0 2.6 2 1 0 2 2 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|218883334|ref|YP_002427716.1| - 0.00011 22.2 0.1 0.00053 20.0 0.0 2.3 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|218883334|ref|YP_002427716.1| - 0.00015 22.3 0.0 0.00041 20.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|218883334|ref|YP_002427716.1| - 0.0002 20.9 0.1 0.0022 17.6 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|218883334|ref|YP_002427716.1| - 0.00055 19.6 0.4 0.0029 17.2 0.1 2.1 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|218883334|ref|YP_002427716.1| - 0.00081 18.8 0.8 0.0018 17.7 0.1 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI TFIID-31kDa PF02291.15 gi|218883334|ref|YP_002427716.1| - 0.00093 19.3 0.1 0.1 12.7 0.0 2.8 3 0 0 3 3 3 1 Transcription initiation factor IID, 31kD subunit DnaB_C PF03796.15 gi|218883334|ref|YP_002427716.1| - 0.0012 18.2 0.0 0.0055 16.1 0.0 1.9 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_30 PF13604.6 gi|218883334|ref|YP_002427716.1| - 0.0013 18.5 0.2 0.07 12.8 0.1 2.4 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|218883334|ref|YP_002427716.1| - 0.0017 18.1 0.1 0.0038 17.0 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.6 gi|218883334|ref|YP_002427716.1| - 0.0021 18.4 1.7 0.028 14.8 1.7 2.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|218883334|ref|YP_002427716.1| - 0.0056 16.9 0.2 0.026 14.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|218883334|ref|YP_002427716.1| - 0.011 15.0 0.0 0.022 14.0 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.6 gi|218883334|ref|YP_002427716.1| - 0.014 15.5 0.0 0.027 14.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|218883334|ref|YP_002427716.1| - 0.022 14.8 0.0 0.16 11.9 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 gi|218883334|ref|YP_002427716.1| - 0.023 14.4 0.6 0.29 10.8 0.0 2.7 3 0 0 3 3 3 0 Sigma-54 interaction domain PhoH PF02562.16 gi|218883334|ref|YP_002427716.1| - 0.027 13.9 0.1 0.058 12.8 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_11 PF13086.6 gi|218883334|ref|YP_002427716.1| - 0.032 14.0 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|218883334|ref|YP_002427716.1| - 0.036 14.5 0.0 0.072 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|218883334|ref|YP_002427716.1| - 0.039 13.2 0.0 0.085 12.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.6 gi|218883334|ref|YP_002427716.1| - 0.045 14.2 0.5 0.22 11.9 0.2 2.4 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|218883334|ref|YP_002427716.1| - 0.07 13.7 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.17 gi|218883334|ref|YP_002427716.1| - 0.07 12.2 0.2 0.25 10.4 0.1 1.9 1 1 1 2 2 2 0 Parvovirus non-structural protein NS1 AAA_24 PF13479.6 gi|218883334|ref|YP_002427716.1| - 0.082 12.6 0.0 1 9.0 0.1 2.5 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|218883334|ref|YP_002427716.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SBF2 PF12335.8 gi|218883334|ref|YP_002427716.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Myotubularin protein TsaE PF02367.17 gi|218883334|ref|YP_002427716.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE KTI12 PF08433.10 gi|218883334|ref|YP_002427716.1| - 0.14 11.6 0.0 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Pyridoxal_deC PF00282.19 gi|218883335|ref|YP_002427717.1| - 2.6e-23 82.3 0.0 7.2e-23 80.9 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|218883335|ref|YP_002427717.1| - 1.7e-13 50.3 0.0 7.7e-12 44.8 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|218883335|ref|YP_002427717.1| - 2.1e-09 37.0 0.1 1.5e-06 27.7 0.1 2.5 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|218883335|ref|YP_002427717.1| - 7.2e-09 35.3 0.0 2.4e-08 33.6 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|218883335|ref|YP_002427717.1| - 0.002 17.5 0.0 0.0029 17.0 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|218883335|ref|YP_002427717.1| - 0.017 13.9 0.1 0.12 11.0 0.1 1.9 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain RIO1 PF01163.22 gi|218883336|ref|YP_002427718.1| - 1.6e-43 148.5 0.0 2.3e-43 148.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|218883336|ref|YP_002427718.1| - 2.2e-20 72.6 0.4 4.8e-20 71.6 0.4 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|218883336|ref|YP_002427718.1| - 5.2e-07 29.8 0.0 9.2e-06 25.7 0.0 2.8 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|218883336|ref|YP_002427718.1| - 0.00017 20.5 0.0 0.00021 20.2 0.0 1.1 1 0 0 1 1 1 1 Fungal protein kinase WaaY PF06176.11 gi|218883336|ref|YP_002427718.1| - 0.0038 16.9 0.0 0.0063 16.2 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.25 gi|218883336|ref|YP_002427718.1| - 0.0061 16.0 0.0 0.019 14.3 0.0 1.7 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|218883336|ref|YP_002427718.1| - 0.0096 15.3 0.0 0.029 13.7 0.0 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family TrmB PF01978.19 gi|218883336|ref|YP_002427718.1| - 0.046 13.6 0.2 0.2 11.6 0.1 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Fructosamin_kin PF03881.14 gi|218883336|ref|YP_002427718.1| - 0.054 12.7 0.0 0.1 11.8 0.0 1.5 1 0 0 1 1 1 0 Fructosamine kinase DUF460 PF04312.13 gi|218883337|ref|YP_002427719.1| - 8e-48 161.7 1.7 2.4e-47 160.2 1.7 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF460) DUF2229 PF09989.9 gi|218883337|ref|YP_002427719.1| - 0.074 12.7 1.6 0.22 11.1 0.8 2.2 1 1 2 3 3 3 0 CoA enzyme activase uncharacterised domain (DUF2229) TMF_DNA_bd PF12329.8 gi|218883337|ref|YP_002427719.1| - 0.081 12.9 15.6 0.062 13.3 1.7 3.5 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF16 PF01519.16 gi|218883337|ref|YP_002427719.1| - 0.098 13.2 3.6 7 7.2 0.4 3.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 LMBR1 PF04791.16 gi|218883337|ref|YP_002427719.1| - 0.18 10.6 0.1 1 8.2 0.1 1.9 1 1 0 1 1 1 0 LMBR1-like membrane protein TRAF_BIRC3_bd PF16673.5 gi|218883337|ref|YP_002427719.1| - 0.19 11.5 7.5 0.73 9.7 1.4 2.9 1 1 1 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain Vps53_N PF04100.12 gi|218883337|ref|YP_002427719.1| - 0.24 10.3 4.3 0.44 9.5 1.8 2.3 1 1 1 2 2 2 0 Vps53-like, N-terminal Atg14 PF10186.9 gi|218883337|ref|YP_002427719.1| - 0.31 10.1 2.3 0.23 10.5 0.5 1.6 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_13 PF13166.6 gi|218883337|ref|YP_002427719.1| - 0.41 9.2 4.4 0.67 8.5 4.4 1.3 1 0 0 1 1 1 0 AAA domain Ead_Ea22 PF13935.6 gi|218883337|ref|YP_002427719.1| - 0.44 11.2 5.0 0.18 12.5 1.6 1.9 2 0 0 2 2 2 0 Ead/Ea22-like protein MPS2 PF17060.5 gi|218883337|ref|YP_002427719.1| - 1 8.6 10.3 3.8 6.7 9.3 2.1 1 1 0 1 1 1 0 Monopolar spindle protein 2 Cep57_MT_bd PF06657.13 gi|218883337|ref|YP_002427719.1| - 1.4 9.4 7.0 8.7 6.9 7.0 2.3 1 1 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 NYD-SP28 PF14772.6 gi|218883337|ref|YP_002427719.1| - 1.4 9.0 12.4 0.37 10.9 1.2 3.4 3 0 0 3 3 3 0 Sperm tail ABC_tran_CTD PF16326.5 gi|218883337|ref|YP_002427719.1| - 1.7 9.0 10.8 0.14 12.4 2.3 3.1 3 0 0 3 3 3 0 ABC transporter C-terminal domain FlaC_arch PF05377.11 gi|218883337|ref|YP_002427719.1| - 1.7 9.1 7.6 5.5 7.5 1.1 3.8 2 1 0 3 3 3 0 Flagella accessory protein C (FlaC) NPV_P10 PF05531.12 gi|218883337|ref|YP_002427719.1| - 1.8 9.1 4.4 5.2 7.6 0.0 3.7 5 0 0 5 5 3 0 Nucleopolyhedrovirus P10 protein DUF641 PF04859.12 gi|218883337|ref|YP_002427719.1| - 1.8 8.9 12.2 0.45 10.9 0.7 2.9 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) Spc29 PF17082.5 gi|218883337|ref|YP_002427719.1| - 2.4 7.9 13.2 0.14 12.0 6.5 2.4 3 1 0 3 3 2 0 Spindle Pole Component 29 DUF1192 PF06698.11 gi|218883337|ref|YP_002427719.1| - 2.7 8.1 8.0 3.5 7.8 0.3 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF1192) Med9 PF07544.13 gi|218883337|ref|YP_002427719.1| - 2.8 8.1 8.2 4 7.6 5.0 2.7 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Fib_alpha PF08702.10 gi|218883337|ref|YP_002427719.1| - 3 8.0 9.0 0.38 10.9 1.9 2.7 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family Fez1 PF06818.15 gi|218883337|ref|YP_002427719.1| - 4.7 7.6 7.8 1.5 9.2 4.7 1.8 2 1 0 2 2 2 0 Fez1 SPATA24 PF15175.6 gi|218883337|ref|YP_002427719.1| - 6.4 6.6 9.2 0.89 9.4 0.6 2.7 1 1 1 3 3 3 0 Spermatogenesis-associated protein 24 AdoMet_Synthase PF01941.19 gi|218883338|ref|YP_002427720.1| - 5.8e-170 565.3 1.1 6.5e-170 565.2 1.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) FbpA PF05833.11 gi|218883339|ref|YP_002427721.1| - 1.2e-37 129.7 5.7 1.6e-37 129.4 5.7 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|218883339|ref|YP_002427721.1| - 4.3e-23 82.0 0.0 4.2e-22 78.8 0.0 2.5 3 0 0 3 3 3 1 NFACT protein RNA binding domain Occludin_ELL PF07303.13 gi|218883339|ref|YP_002427721.1| - 0.002 18.8 8.4 0.0066 17.2 1.5 2.7 2 0 0 2 2 2 1 Occludin homology domain MPM1 PF17234.2 gi|218883339|ref|YP_002427721.1| - 0.0086 16.3 0.1 0.017 15.4 0.1 1.5 1 0 0 1 1 1 1 Mitochondrial peculiar membrane protein 1 NPV_P10 PF05531.12 gi|218883339|ref|YP_002427721.1| - 0.0088 16.5 0.8 0.14 12.6 0.1 2.4 2 0 0 2 2 2 1 Nucleopolyhedrovirus P10 protein LMBR1 PF04791.16 gi|218883339|ref|YP_002427721.1| - 0.029 13.3 0.6 0.038 12.9 0.6 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein IL31 PF15209.6 gi|218883339|ref|YP_002427721.1| - 0.042 13.6 1.2 0.71 9.7 0.2 2.6 2 0 0 2 2 2 0 Interleukin 31 IES5 PF17335.2 gi|218883339|ref|YP_002427721.1| - 0.046 14.0 0.4 0.046 14.0 0.4 2.3 2 0 0 2 2 2 0 Ino80 complex subunit 5 Spc7 PF08317.11 gi|218883339|ref|YP_002427721.1| - 0.068 12.0 14.8 0.0056 15.6 8.0 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein Baculo_PEP_C PF04513.12 gi|218883339|ref|YP_002427721.1| - 0.089 12.8 1.2 0.47 10.5 0.0 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DHR10 PF18595.1 gi|218883339|ref|YP_002427721.1| - 0.12 12.4 9.5 0.22 11.6 1.3 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Fez1 PF06818.15 gi|218883339|ref|YP_002427721.1| - 0.17 12.3 8.3 0.31 11.5 8.3 1.3 1 0 0 1 1 1 0 Fez1 DASH_Spc34 PF08657.10 gi|218883339|ref|YP_002427721.1| - 0.4 10.4 9.0 0.72 9.6 2.7 2.2 2 0 0 2 2 2 0 DASH complex subunit Spc34 DUF1664 PF07889.12 gi|218883339|ref|YP_002427721.1| - 1.2 9.2 5.8 3.4 7.7 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF745 PF05335.13 gi|218883339|ref|YP_002427721.1| - 1.9 8.1 3.8 2.4 7.9 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF745) Fib_alpha PF08702.10 gi|218883339|ref|YP_002427721.1| - 2.4 8.3 6.3 8.6 6.5 0.9 2.5 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family FmiP_Thoc5 PF09766.9 gi|218883339|ref|YP_002427721.1| - 4.8 6.4 9.7 24 4.1 8.1 1.9 1 1 0 1 1 1 0 Fms-interacting protein/Thoc5 V_ATPase_I PF01496.19 gi|218883339|ref|YP_002427721.1| - 4.9 5.0 9.7 2.5 5.9 3.4 2.0 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family THOC7 PF05615.13 gi|218883339|ref|YP_002427721.1| - 5.8 7.2 11.4 2.1 8.6 4.2 2.3 2 0 0 2 2 2 0 Tho complex subunit 7 Laminin_II PF06009.12 gi|218883339|ref|YP_002427721.1| - 6.5 6.8 8.8 23 5.0 2.9 2.3 1 1 1 2 2 2 0 Laminin Domain II Med9 PF07544.13 gi|218883339|ref|YP_002427721.1| - 7.7 6.7 12.0 13 5.9 1.4 3.1 3 0 0 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF3450 PF11932.8 gi|218883339|ref|YP_002427721.1| - 7.8 5.7 8.8 1.7 7.9 1.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) 7TMR-DISM_7TM PF07695.11 gi|218883340|ref|YP_002427722.1| - 0.02 14.8 7.9 0.024 14.6 7.9 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling Peptidase_U4 PF03419.13 gi|218883340|ref|YP_002427722.1| - 0.076 12.3 3.2 0.09 12.0 3.2 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF4199 PF13858.6 gi|218883340|ref|YP_002427722.1| - 0.086 13.2 7.4 0.1 13.0 7.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) RNA_Me_trans PF04252.13 gi|218883341|ref|YP_002427723.1| - 1.6e-36 125.8 0.0 2e-36 125.5 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase DUF2193 PF09959.9 gi|218883341|ref|YP_002427723.1| - 0.17 10.3 0.0 0.22 9.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2193) Translin PF01997.16 gi|218883342|ref|YP_002427724.1| - 4.2e-13 49.8 0.0 2.4e-11 44.0 0.0 2.4 1 1 0 1 1 1 1 Translin family INT_SG_DDX_CT_C PF15300.6 gi|218883342|ref|YP_002427724.1| - 0.012 15.4 0.1 0.03 14.1 0.1 1.7 1 0 0 1 1 1 0 INTS6/SAGE1/DDX26B/CT45 C-terminus HEPN PF05168.14 gi|218883342|ref|YP_002427724.1| - 0.078 13.1 0.5 0.46 10.6 0.0 2.2 2 1 0 2 2 2 0 HEPN domain TrmB PF01978.19 gi|218883343|ref|YP_002427725.1| - 3.3e-05 23.7 0.1 6.8e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|218883343|ref|YP_002427725.1| - 9.7e-05 22.2 0.0 0.0002 21.2 0.0 1.5 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|218883343|ref|YP_002427725.1| - 0.00012 21.9 0.1 0.0002 21.2 0.1 1.4 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|218883343|ref|YP_002427725.1| - 0.00056 20.0 0.2 0.0012 19.0 0.2 1.5 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC TFIIE_alpha PF02002.17 gi|218883343|ref|YP_002427725.1| - 0.00084 19.2 0.0 0.003 17.4 0.1 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|218883343|ref|YP_002427725.1| - 0.00093 19.5 0.1 0.0018 18.6 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator z-alpha PF02295.17 gi|218883343|ref|YP_002427725.1| - 0.0043 17.1 0.1 0.0068 16.4 0.1 1.3 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain RNA_pol_Rpc34 PF05158.12 gi|218883343|ref|YP_002427725.1| - 0.0046 16.4 1.5 0.21 10.9 0.1 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit HTH_5 PF01022.20 gi|218883343|ref|YP_002427725.1| - 0.0058 16.5 0.5 0.017 15.0 0.4 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_micro PF17007.5 gi|218883343|ref|YP_002427725.1| - 0.031 13.1 0.0 0.035 12.9 0.0 1.1 1 0 0 1 1 1 0 HTH-like HTH_27 PF13463.6 gi|218883343|ref|YP_002427725.1| - 0.046 14.2 0.0 0.076 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Trans_reg_C PF00486.28 gi|218883343|ref|YP_002427725.1| - 0.05 13.7 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal RasGAP PF00616.19 gi|218883343|ref|YP_002427725.1| - 0.05 13.3 0.2 0.077 12.7 0.2 1.2 1 1 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase HTH_36 PF13730.6 gi|218883343|ref|YP_002427725.1| - 0.054 13.5 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|218883343|ref|YP_002427725.1| - 0.074 13.0 0.6 0.15 12.0 0.6 1.4 1 0 0 1 1 1 0 HTH domain PAX PF00292.18 gi|218883343|ref|YP_002427725.1| - 0.092 12.7 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 'Paired box' domain Radical_SAM PF04055.21 gi|218883344|ref|YP_002427726.1| - 6.4e-24 85.2 0.0 1.5e-23 84.0 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|218883344|ref|YP_002427726.1| - 5e-06 26.5 0.0 1.2e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain ATR13 PF16829.5 gi|218883344|ref|YP_002427726.1| - 0.12 12.7 0.1 5.3 7.5 0.0 2.9 2 1 0 3 3 3 0 Avirulence protein ATR13, RxLR effector DUF4423 PF14394.6 gi|218883345|ref|YP_002427727.1| - 0.023 14.4 0.1 0.17 11.6 0.0 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF4423) ALS_ss_C PF10369.9 gi|218883345|ref|YP_002427727.1| - 0.023 14.9 0.3 0.048 13.9 0.3 1.5 1 1 1 2 2 2 0 Small subunit of acetolactate synthase Stork_head PF10264.9 gi|218883345|ref|YP_002427727.1| - 0.13 12.4 0.1 8.3 6.7 0.0 2.2 1 1 1 2 2 2 0 Winged helix Storkhead-box1 domain HAD_2 PF13419.6 gi|218883346|ref|YP_002427728.1| - 1.6e-11 44.6 0.0 3.7e-11 43.4 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|218883346|ref|YP_002427728.1| - 0.0086 16.1 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|218883346|ref|YP_002427728.1| - 0.017 15.5 0.0 0.024 15.0 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase TatD_DNase PF01026.21 gi|218883348|ref|YP_002427730.1| - 8.8e-38 130.1 0.0 1.1e-37 129.8 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.24 gi|218883348|ref|YP_002427730.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel UPF0242 PF06785.11 gi|218883350|ref|YP_002427732.1| - 4.9e-05 23.5 13.1 6.6e-05 23.1 13.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus GerE PF00196.19 gi|218883350|ref|YP_002427732.1| - 8.3e-05 22.1 0.1 0.00033 20.1 0.0 2.0 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family Tmemb_cc2 PF10267.9 gi|218883350|ref|YP_002427732.1| - 0.00018 20.8 5.8 0.00023 20.5 5.8 1.3 1 0 0 1 1 1 1 Predicted transmembrane and coiled-coil 2 protein Spc7 PF08317.11 gi|218883350|ref|YP_002427732.1| - 0.00022 20.2 11.4 0.00029 19.8 11.4 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein Sigma70_r4_2 PF08281.12 gi|218883350|ref|YP_002427732.1| - 0.00027 20.5 0.0 0.00065 19.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|218883350|ref|YP_002427732.1| - 0.00041 20.0 0.1 0.0011 18.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|218883350|ref|YP_002427732.1| - 0.00051 19.5 0.2 0.0036 16.8 0.1 2.5 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding ATG16 PF08614.11 gi|218883350|ref|YP_002427732.1| - 0.00054 20.3 13.3 0.0009 19.5 13.3 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF812 PF05667.11 gi|218883350|ref|YP_002427732.1| - 0.00063 18.8 7.1 0.00072 18.6 7.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) HTH_23 PF13384.6 gi|218883350|ref|YP_002427732.1| - 0.0007 19.3 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Macoilin PF09726.9 gi|218883350|ref|YP_002427732.1| - 0.00082 18.1 3.1 0.00093 17.9 3.1 1.1 1 0 0 1 1 1 1 Macoilin family HTH_40 PF14493.6 gi|218883350|ref|YP_002427732.1| - 0.00088 19.7 4.1 0.0038 17.6 4.1 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain GrpE PF01025.19 gi|218883350|ref|YP_002427732.1| - 0.0011 18.7 9.8 0.0019 17.9 9.8 1.5 1 0 0 1 1 1 1 GrpE AAA_13 PF13166.6 gi|218883350|ref|YP_002427732.1| - 0.0012 17.7 6.0 0.0015 17.3 6.0 1.3 1 0 0 1 1 1 1 AAA domain Bacillus_HBL PF05791.11 gi|218883350|ref|YP_002427732.1| - 0.0012 18.6 5.1 0.0023 17.8 5.1 1.5 1 0 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) ERM PF00769.19 gi|218883350|ref|YP_002427732.1| - 0.0019 18.1 9.1 0.0024 17.7 9.1 1.3 1 0 0 1 1 1 1 Ezrin/radixin/moesin family HTH_29 PF13551.6 gi|218883350|ref|YP_002427732.1| - 0.002 18.1 0.0 0.0038 17.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|218883350|ref|YP_002427732.1| - 0.0037 17.2 0.2 0.03 14.3 0.0 2.4 2 0 0 2 2 2 1 HTH domain TMF_TATA_bd PF12325.8 gi|218883350|ref|YP_002427732.1| - 0.0044 17.2 6.8 0.0044 17.2 6.8 2.3 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding Atg14 PF10186.9 gi|218883350|ref|YP_002427732.1| - 0.0049 16.0 6.1 0.0059 15.7 6.1 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 SOG2 PF10428.9 gi|218883350|ref|YP_002427732.1| - 0.0053 16.0 1.8 0.0058 15.9 1.8 1.1 1 0 0 1 1 1 1 RAM signalling pathway protein APG6_N PF17675.1 gi|218883350|ref|YP_002427732.1| - 0.0058 17.2 10.9 0.0087 16.6 10.9 1.4 1 0 0 1 1 1 1 Apg6 coiled-coil region E2R135 PF11570.8 gi|218883350|ref|YP_002427732.1| - 0.0077 16.5 3.1 0.018 15.3 2.9 1.7 1 1 1 2 2 2 1 Coiled-coil receptor-binding R-domain of colicin E2 ADIP PF11559.8 gi|218883350|ref|YP_002427732.1| - 0.0081 16.2 9.5 0.018 15.1 9.5 1.6 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Fib_alpha PF08702.10 gi|218883350|ref|YP_002427732.1| - 0.0082 16.3 6.2 0.0082 16.3 6.2 1.7 2 0 0 2 2 1 1 Fibrinogen alpha/beta chain family DUF3552 PF12072.8 gi|218883350|ref|YP_002427732.1| - 0.01 15.3 10.5 0.018 14.4 10.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF641 PF04859.12 gi|218883350|ref|YP_002427732.1| - 0.01 16.2 10.3 0.017 15.4 10.1 1.7 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) Exonuc_VII_L PF02601.15 gi|218883350|ref|YP_002427732.1| - 0.011 15.4 4.4 0.014 15.0 4.4 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit HTH_DeoR PF08220.12 gi|218883350|ref|YP_002427732.1| - 0.011 15.4 0.1 0.072 12.8 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain DUF4407 PF14362.6 gi|218883350|ref|YP_002427732.1| - 0.014 14.8 4.9 0.02 14.2 4.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) SIL1 PF16782.5 gi|218883350|ref|YP_002427732.1| - 0.014 14.6 5.1 0.017 14.3 5.1 1.1 1 0 0 1 1 1 0 Nucleotide exchange factor SIL1 TPR_MLP1_2 PF07926.12 gi|218883350|ref|YP_002427732.1| - 0.016 15.3 10.5 0.016 15.3 10.5 1.9 2 0 0 2 2 1 0 TPR/MLP1/MLP2-like protein Sigma70_r4 PF04545.16 gi|218883350|ref|YP_002427732.1| - 0.016 14.7 0.0 0.052 13.1 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 DUF16 PF01519.16 gi|218883350|ref|YP_002427732.1| - 0.017 15.6 15.3 1.2 9.7 15.3 2.8 1 1 0 1 1 1 0 Protein of unknown function DUF16 HTH_5 PF01022.20 gi|218883350|ref|YP_002427732.1| - 0.018 14.9 0.0 0.053 13.4 0.0 1.8 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family DUF4164 PF13747.6 gi|218883350|ref|YP_002427732.1| - 0.018 15.3 11.1 0.034 14.4 8.9 2.4 2 1 0 2 2 1 0 Domain of unknown function (DUF4164) Herpes_UL6 PF01763.16 gi|218883350|ref|YP_002427732.1| - 0.022 13.3 3.7 0.028 12.9 3.7 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like Troponin PF00992.20 gi|218883350|ref|YP_002427732.1| - 0.027 14.8 11.3 0.049 13.9 11.3 1.4 1 0 0 1 1 1 0 Troponin DivIC PF04977.15 gi|218883350|ref|YP_002427732.1| - 0.027 14.2 6.2 0.027 14.2 6.2 2.7 1 1 1 2 2 2 0 Septum formation initiator DUF1664 PF07889.12 gi|218883350|ref|YP_002427732.1| - 0.031 14.3 7.3 0.043 13.9 5.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) FapA PF03961.13 gi|218883350|ref|YP_002427732.1| - 0.033 12.8 8.5 0.044 12.4 8.5 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Cep57_MT_bd PF06657.13 gi|218883350|ref|YP_002427732.1| - 0.035 14.6 7.2 0.041 14.3 5.6 1.9 2 0 0 2 2 1 0 Centrosome microtubule-binding domain of Cep57 HTH_20 PF12840.7 gi|218883350|ref|YP_002427732.1| - 0.037 14.1 0.0 0.13 12.3 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain ZapB PF06005.12 gi|218883350|ref|YP_002427732.1| - 0.038 14.4 21.6 0.7 10.4 12.5 2.7 1 1 1 2 2 2 0 Cell division protein ZapB HTH_28 PF13518.6 gi|218883350|ref|YP_002427732.1| - 0.038 14.1 0.0 0.073 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TEX13 PF15186.6 gi|218883350|ref|YP_002427732.1| - 0.052 13.2 3.7 0.088 12.5 3.7 1.4 1 0 0 1 1 1 0 Testis-expressed sequence 13 protein family DUF2570 PF10828.8 gi|218883350|ref|YP_002427732.1| - 0.053 13.4 4.0 0.09 12.6 4.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) Lipoprotein_20 PF13942.6 gi|218883350|ref|YP_002427732.1| - 0.054 13.4 3.4 0.077 12.9 3.4 1.3 1 0 0 1 1 1 0 YfhG lipoprotein HemX PF04375.14 gi|218883350|ref|YP_002427732.1| - 0.057 12.7 8.0 0.23 10.7 8.2 1.7 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase GAS PF13851.6 gi|218883350|ref|YP_002427732.1| - 0.06 12.7 18.4 0.12 11.7 2.6 2.1 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding HAUS-augmin3 PF14932.6 gi|218883350|ref|YP_002427732.1| - 0.12 12.0 12.8 0.18 11.4 12.3 1.6 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 HTH_Tnp_ISL3 PF13542.6 gi|218883350|ref|YP_002427732.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Fez1 PF06818.15 gi|218883350|ref|YP_002427732.1| - 0.12 12.8 14.9 0.1 13.1 13.5 1.6 1 1 0 1 1 1 0 Fez1 BLOC1S3 PF15753.5 gi|218883350|ref|YP_002427732.1| - 0.14 12.3 4.1 0.24 11.5 4.1 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex 1 subunit 3 TolA_bind_tri PF16331.5 gi|218883350|ref|YP_002427732.1| - 0.14 12.2 9.4 0.097 12.8 4.1 2.4 1 1 1 2 2 2 0 TolA binding protein trimerisation DUF3450 PF11932.8 gi|218883350|ref|YP_002427732.1| - 0.15 11.3 9.4 1.5 8.0 9.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Baculo_PEP_C PF04513.12 gi|218883350|ref|YP_002427732.1| - 0.15 12.1 7.6 0.17 11.9 5.8 2.0 2 1 0 2 2 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Golgin_A5 PF09787.9 gi|218883350|ref|YP_002427732.1| - 0.16 11.4 13.3 0.19 11.2 12.9 1.3 1 1 0 1 1 1 0 Golgin subfamily A member 5 DUF1759 PF03564.15 gi|218883350|ref|YP_002427732.1| - 0.16 11.9 5.3 0.22 11.5 4.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1759) Pinin_SDK_memA PF04696.13 gi|218883350|ref|YP_002427732.1| - 0.16 12.0 9.3 0.33 11.0 9.3 1.5 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region MAD PF05557.13 gi|218883350|ref|YP_002427732.1| - 0.16 10.3 17.1 0.38 9.0 17.1 1.6 1 1 0 1 1 1 0 Mitotic checkpoint protein Tropomyosin PF00261.20 gi|218883350|ref|YP_002427732.1| - 0.17 11.2 17.6 0.018 14.4 13.1 1.6 2 0 0 2 2 1 0 Tropomyosin GP41 PF00517.17 gi|218883350|ref|YP_002427732.1| - 0.19 11.6 4.4 0.18 11.7 2.2 1.8 1 1 1 2 2 2 0 Retroviral envelope protein Tropomyosin_1 PF12718.7 gi|218883350|ref|YP_002427732.1| - 0.21 11.7 20.1 0.041 14.0 15.0 2.2 2 1 0 2 2 2 0 Tropomyosin like Lebercilin PF15619.6 gi|218883350|ref|YP_002427732.1| - 0.22 11.2 17.9 0.64 9.7 17.4 2.0 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease V_ATPase_I PF01496.19 gi|218883350|ref|YP_002427732.1| - 0.23 9.3 6.6 0.33 8.8 6.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family KxDL PF10241.9 gi|218883350|ref|YP_002427732.1| - 0.25 11.7 6.1 0.63 10.4 6.1 1.8 1 0 0 1 1 1 0 Uncharacterized conserved protein DUF4094 PF13334.6 gi|218883350|ref|YP_002427732.1| - 0.3 11.5 3.9 0.89 10.0 1.6 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) DUF1192 PF06698.11 gi|218883350|ref|YP_002427732.1| - 0.32 11.1 8.8 0.49 10.5 1.0 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) DUF948 PF06103.11 gi|218883350|ref|YP_002427732.1| - 0.41 10.9 5.8 1.7 8.9 4.4 2.7 2 1 0 2 2 1 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|218883350|ref|YP_002427732.1| - 0.44 11.0 7.4 4.2 7.9 1.0 2.7 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF244 PF03112.14 gi|218883350|ref|YP_002427732.1| - 0.45 10.3 5.5 1 9.2 5.2 1.8 2 0 0 2 2 1 0 Uncharacterized protein family (ORF7) DUF Nup54 PF13874.6 gi|218883350|ref|YP_002427732.1| - 0.47 10.5 9.8 0.75 9.9 9.6 1.6 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Nup88 PF10168.9 gi|218883350|ref|YP_002427732.1| - 0.49 8.1 11.0 0.67 7.7 11.0 1.1 1 0 0 1 1 1 0 Nuclear pore component Peptidase_S46 PF10459.9 gi|218883350|ref|YP_002427732.1| - 0.62 8.6 4.8 0.89 8.1 4.8 1.1 1 0 0 1 1 1 0 Peptidase S46 CREPT PF16566.5 gi|218883350|ref|YP_002427732.1| - 0.65 10.2 9.1 0.97 9.6 8.2 1.7 1 1 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour COG2 PF06148.11 gi|218883350|ref|YP_002427732.1| - 0.85 9.7 11.8 0.16 12.1 2.1 2.8 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DHR10 PF18595.1 gi|218883350|ref|YP_002427732.1| - 0.91 9.6 18.9 2.7 8.1 17.7 2.1 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain Cauli_AT PF03233.13 gi|218883350|ref|YP_002427732.1| - 0.92 9.4 13.5 0.04 13.9 3.3 2.3 1 1 1 2 2 2 0 Aphid transmission protein OmpH PF03938.14 gi|218883350|ref|YP_002427732.1| - 0.95 9.8 13.7 0.83 10.0 11.3 1.9 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) zf-C4H2 PF10146.9 gi|218883350|ref|YP_002427732.1| - 1.1 9.6 8.6 2.4 8.4 6.5 2.1 2 0 0 2 2 2 0 Zinc finger-containing protein Mod_r PF07200.13 gi|218883350|ref|YP_002427732.1| - 1.2 9.3 14.2 0.66 10.1 11.6 1.8 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein NBP1 PF08537.10 gi|218883350|ref|YP_002427732.1| - 1.2 8.4 9.9 2.2 7.6 9.9 1.4 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 Rx_N PF18052.1 gi|218883350|ref|YP_002427732.1| - 1.5 9.2 6.9 0.76 10.1 3.1 2.3 1 1 1 2 2 2 0 Rx N-terminal domain bZIP_2 PF07716.15 gi|218883350|ref|YP_002427732.1| - 1.5 9.0 18.4 4.2 7.5 3.0 2.8 1 1 1 2 2 2 0 Basic region leucine zipper Spc29 PF17082.5 gi|218883350|ref|YP_002427732.1| - 1.6 8.5 9.0 0.62 9.9 3.7 2.1 1 1 1 2 2 2 0 Spindle Pole Component 29 DUF4446 PF14584.6 gi|218883350|ref|YP_002427732.1| - 1.6 8.7 9.5 3.7 7.5 8.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DUF5320 PF17253.2 gi|218883350|ref|YP_002427732.1| - 1.6 9.8 9.3 3 9.0 2.5 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5320) TMF_DNA_bd PF12329.8 gi|218883350|ref|YP_002427732.1| - 1.6 8.7 21.4 0.044 13.8 14.2 2.2 3 0 0 3 3 1 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.12 gi|218883350|ref|YP_002427732.1| - 1.9 9.1 10.9 0.81 10.4 4.5 2.7 1 1 1 2 2 2 0 SlyX DUF2203 PF09969.9 gi|218883350|ref|YP_002427732.1| - 2.4 8.9 8.2 0.44 11.3 2.0 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) EMP24_GP25L PF01105.24 gi|218883350|ref|YP_002427732.1| - 2.9 7.8 6.3 4.4 7.2 5.8 1.5 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD TMPIT PF07851.13 gi|218883350|ref|YP_002427732.1| - 3.1 7.0 11.8 0.25 10.5 7.3 1.4 2 0 0 2 2 1 0 TMPIT-like protein DUF5595 PF18077.1 gi|218883350|ref|YP_002427732.1| - 3.8 7.6 14.4 6.1 7.0 6.8 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF5595) Uso1_p115_C PF04871.13 gi|218883350|ref|YP_002427732.1| - 4.1 7.8 15.4 8.2 6.8 15.4 1.7 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF2205 PF10224.9 gi|218883350|ref|YP_002427732.1| - 4.1 7.5 12.8 20 5.2 12.3 2.3 1 1 0 1 1 1 0 Short coiled-coil protein Csm1_N PF18504.1 gi|218883350|ref|YP_002427732.1| - 4.5 7.7 16.2 2.3 8.6 4.3 2.9 1 1 2 3 3 2 0 Csm1 N-terminal domain Syntaxin-6_N PF09177.11 gi|218883350|ref|YP_002427732.1| - 4.8 7.8 9.2 9.5 6.9 7.8 2.2 2 1 0 2 2 1 0 Syntaxin 6, N-terminal CLZ PF16526.5 gi|218883350|ref|YP_002427732.1| - 4.9 7.6 14.5 3.7 8.0 9.3 3.1 2 1 1 3 3 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels PP2C_C PF07830.13 gi|218883350|ref|YP_002427732.1| - 5.4 7.5 8.7 10 6.6 6.9 2.2 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Seryl_tRNA_N PF02403.22 gi|218883350|ref|YP_002427732.1| - 6.1 7.1 17.1 11 6.2 14.9 2.4 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4795 PF16043.5 gi|218883350|ref|YP_002427732.1| - 6.2 6.4 14.1 27 4.3 14.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Cep57_CLD_2 PF14197.6 gi|218883350|ref|YP_002427732.1| - 6.2 7.0 18.0 25 5.0 18.3 1.9 2 1 0 2 2 1 0 Centrosome localisation domain of PPC89 Hemagglutinin PF00509.18 gi|218883350|ref|YP_002427732.1| - 6.4 5.1 7.6 8.7 4.6 7.6 1.1 1 0 0 1 1 1 0 Haemagglutinin YabA PF06156.13 gi|218883350|ref|YP_002427732.1| - 7.2 7.3 16.2 17 6.1 11.7 2.7 1 1 1 2 2 2 0 Initiation control protein YabA DUF730 PF05325.11 gi|218883350|ref|YP_002427732.1| - 7.3 6.6 6.5 1 9.4 1.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF730) Swi5 PF07061.11 gi|218883350|ref|YP_002427732.1| - 8.1 6.6 14.7 1.7e+02 2.4 11.2 3.0 1 1 1 2 2 2 0 Swi5 Mistic PF11458.8 gi|218883352|ref|YP_002427734.1| - 0.13 12.3 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Membrane-integrating protein Mistic Sua5_yciO_yrdC PF01300.18 gi|218883353|ref|YP_002427735.1| - 4.3e-56 189.2 0.0 6.5e-56 188.6 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|218883353|ref|YP_002427735.1| - 2.3e-30 105.9 0.0 3.4e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding ATPase PF06745.13 gi|218883354|ref|YP_002427736.1| - 8.3e-58 195.5 0.1 9.5e-58 195.3 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|218883354|ref|YP_002427736.1| - 9.3e-08 31.9 0.0 1.5e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|218883354|ref|YP_002427736.1| - 3.8e-05 23.1 0.0 6.1e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Rad51 RecA PF00154.21 gi|218883354|ref|YP_002427736.1| - 6.4e-05 22.5 0.1 9.3e-05 22.0 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein MEDS PF14417.6 gi|218883354|ref|YP_002427736.1| - 0.00045 20.1 0.0 0.00067 19.5 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain GvpD PF07088.11 gi|218883354|ref|YP_002427736.1| - 0.0007 18.3 0.7 0.0036 16.0 0.7 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|218883354|ref|YP_002427736.1| - 0.0037 16.6 0.0 0.0064 15.8 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|218883354|ref|YP_002427736.1| - 0.0077 16.0 0.1 0.018 14.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|218883354|ref|YP_002427736.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein PAXNEB PF05625.11 gi|218883354|ref|YP_002427736.1| - 0.013 14.6 0.0 0.052 12.7 0.0 1.7 2 0 0 2 2 2 0 PAXNEB protein AAA_14 PF13173.6 gi|218883354|ref|YP_002427736.1| - 0.08 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF643 PF04867.12 gi|218883354|ref|YP_002427736.1| - 0.11 13.1 1.0 0.49 11.0 0.0 2.3 3 0 0 3 3 2 0 Protein of unknown function (DUF643) AAA_5 PF07728.14 gi|218883354|ref|YP_002427736.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|218883354|ref|YP_002427736.1| - 0.15 11.6 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region KTI12 PF08433.10 gi|218883354|ref|YP_002427736.1| - 0.15 11.5 0.0 9.5 5.6 0.0 2.3 2 1 0 2 2 2 0 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|218883354|ref|YP_002427736.1| - 0.17 12.2 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Helicase_RecD PF05127.14 gi|218883355|ref|YP_002427737.1| - 9.8e-55 185.1 0.0 1.7e-54 184.4 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|218883355|ref|YP_002427737.1| - 6e-42 143.6 0.0 7e-29 100.8 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|218883355|ref|YP_002427737.1| - 8.8e-29 99.3 0.0 8.2e-28 96.2 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.7 gi|218883355|ref|YP_002427737.1| - 2.4e-05 24.7 0.0 0.00013 22.3 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain tRNA_bind_2 PF13725.6 gi|218883355|ref|YP_002427737.1| - 8.2e-05 22.4 0.0 0.00017 21.4 0.0 1.4 1 1 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_1 PF00583.25 gi|218883355|ref|YP_002427737.1| - 8.9e-05 22.7 0.0 0.00025 21.2 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AAA PF00004.29 gi|218883356|ref|YP_002427738.1| - 7.5e-98 324.1 0.0 4.8e-50 169.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|218883356|ref|YP_002427738.1| - 3.4e-37 126.0 2.8 8.2e-18 63.9 0.1 2.8 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|218883356|ref|YP_002427738.1| - 1.8e-29 101.8 0.4 6.7e-29 99.9 0.2 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|218883356|ref|YP_002427738.1| - 2.6e-16 59.8 0.0 2.3e-08 34.0 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|218883356|ref|YP_002427738.1| - 1.1e-15 57.2 0.0 4.7e-15 55.1 0.0 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|218883356|ref|YP_002427738.1| - 1.7e-13 51.3 0.0 1.1e-06 29.1 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|218883356|ref|YP_002427738.1| - 3.7e-13 49.9 0.0 3.7e-07 30.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|218883356|ref|YP_002427738.1| - 2.5e-12 46.7 0.1 7e-05 22.2 0.0 2.7 2 1 1 3 3 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|218883356|ref|YP_002427738.1| - 5.7e-12 46.1 1.4 0.00056 20.2 0.1 4.5 2 2 0 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|218883356|ref|YP_002427738.1| - 7.6e-12 45.4 1.6 6.8e-06 26.1 0.1 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|218883356|ref|YP_002427738.1| - 1.2e-11 45.0 0.0 7.2e-05 23.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|218883356|ref|YP_002427738.1| - 2e-10 40.5 0.1 0.00053 19.9 0.0 2.9 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_14 PF13173.6 gi|218883356|ref|YP_002427738.1| - 2.4e-09 37.3 0.0 0.00016 21.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|218883356|ref|YP_002427738.1| - 1.1e-08 35.7 0.0 0.0017 18.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|218883356|ref|YP_002427738.1| - 1.7e-08 34.4 0.0 0.0062 16.3 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|218883356|ref|YP_002427738.1| - 1.8e-08 34.8 0.0 0.0022 18.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|218883356|ref|YP_002427738.1| - 1.5e-07 31.8 0.0 0.0035 17.7 0.0 2.8 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|218883356|ref|YP_002427738.1| - 3.7e-07 29.8 1.0 0.018 14.4 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|218883356|ref|YP_002427738.1| - 2e-06 27.7 0.0 0.019 14.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|218883356|ref|YP_002427738.1| - 3e-06 27.0 8.8 0.51 9.9 0.0 4.9 5 1 1 6 6 4 2 AAA domain TsaE PF02367.17 gi|218883356|ref|YP_002427738.1| - 5.2e-06 26.5 0.1 0.081 12.9 0.0 2.6 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|218883356|ref|YP_002427738.1| - 9.3e-06 25.1 0.0 0.15 11.3 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin ATPase PF06745.13 gi|218883356|ref|YP_002427738.1| - 1.9e-05 24.2 4.1 0.26 10.6 0.0 4.2 3 2 0 5 5 5 2 KaiC ABC_tran PF00005.27 gi|218883356|ref|YP_002427738.1| - 2.2e-05 25.0 0.0 0.26 11.8 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_7 PF12775.7 gi|218883356|ref|YP_002427738.1| - 3e-05 23.6 0.0 0.19 11.2 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|218883356|ref|YP_002427738.1| - 3.8e-05 22.9 0.1 0.045 12.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.26 gi|218883356|ref|YP_002427738.1| - 3.9e-05 23.4 0.0 0.38 10.4 0.0 3.1 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|218883356|ref|YP_002427738.1| - 4e-05 23.5 0.0 0.12 12.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|218883356|ref|YP_002427738.1| - 6.9e-05 22.4 0.6 0.26 10.7 0.1 2.8 2 0 0 2 2 2 2 PhoH-like protein ATPase_2 PF01637.18 gi|218883356|ref|YP_002427738.1| - 7e-05 22.8 0.0 0.035 14.0 0.0 2.9 2 1 1 3 3 2 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|218883356|ref|YP_002427738.1| - 7.4e-05 22.7 0.0 0.0055 16.6 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein DUF815 PF05673.13 gi|218883356|ref|YP_002427738.1| - 0.00014 21.1 0.0 0.38 9.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|218883356|ref|YP_002427738.1| - 0.00021 20.7 0.0 0.077 12.2 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|218883356|ref|YP_002427738.1| - 0.00029 20.8 0.9 0.55 10.1 0.1 3.2 2 1 1 3 3 3 1 NACHT domain AAA_17 PF13207.6 gi|218883356|ref|YP_002427738.1| - 0.0011 19.4 0.0 1.6 9.2 0.0 3.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|218883356|ref|YP_002427738.1| - 0.002 17.9 0.2 2.2 7.9 0.0 2.8 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|218883356|ref|YP_002427738.1| - 0.0022 17.9 0.0 2.4 8.0 0.0 3.0 2 1 1 3 3 3 1 Rad17 P-loop domain AAA_11 PF13086.6 gi|218883356|ref|YP_002427738.1| - 0.0024 17.7 0.0 1.5 8.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|218883356|ref|YP_002427738.1| - 0.0031 17.8 1.4 5.2 7.4 0.0 3.2 2 1 1 3 3 3 0 AAA domain AAA_6 PF12774.7 gi|218883356|ref|YP_002427738.1| - 0.0032 16.5 0.1 0.11 11.4 0.0 2.5 2 1 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region Sigma54_activ_2 PF14532.6 gi|218883356|ref|YP_002427738.1| - 0.0045 17.1 0.0 2.3 8.3 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain T2SSE PF00437.20 gi|218883356|ref|YP_002427738.1| - 0.0057 15.8 0.0 1.4 7.9 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein Cytidylate_kin PF02224.18 gi|218883356|ref|YP_002427738.1| - 0.011 15.4 0.1 3.7 7.2 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase IPT PF01745.16 gi|218883356|ref|YP_002427738.1| - 0.012 15.0 0.5 4 6.7 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase PduV-EutP PF10662.9 gi|218883356|ref|YP_002427738.1| - 0.017 14.8 0.0 4.2 7.1 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|218883356|ref|YP_002427738.1| - 0.019 14.2 0.0 5.1 6.2 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain SKI PF01202.22 gi|218883356|ref|YP_002427738.1| - 0.02 15.0 0.0 5.8 7.0 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase eIF-1a PF01176.19 gi|218883356|ref|YP_002427738.1| - 0.03 14.1 0.2 0.11 12.3 0.1 2.1 1 1 0 1 1 1 0 Translation initiation factor 1A / IF-1 DUF1905 PF08922.11 gi|218883356|ref|YP_002427738.1| - 0.04 14.0 0.3 0.7 10.0 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1905) Molydop_binding PF01568.21 gi|218883356|ref|YP_002427738.1| - 0.047 13.7 0.1 0.22 11.6 0.0 2.1 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain Guanylate_kin PF00625.21 gi|218883356|ref|YP_002427738.1| - 0.047 13.4 0.2 33 4.1 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase NTPase_1 PF03266.15 gi|218883356|ref|YP_002427738.1| - 0.047 13.6 5.8 15 5.4 0.0 4.3 3 1 1 4 4 4 0 NTPase AFG1_ATPase PF03969.16 gi|218883356|ref|YP_002427738.1| - 0.05 12.5 0.0 9.7 5.0 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase TniB PF05621.11 gi|218883356|ref|YP_002427738.1| - 0.06 12.8 0.0 13 5.2 0.0 3.2 4 0 0 4 4 3 0 Bacterial TniB protein KAP_NTPase PF07693.14 gi|218883356|ref|YP_002427738.1| - 0.062 12.5 0.1 2.1 7.5 0.0 2.4 1 1 1 2 2 2 0 KAP family P-loop domain AAA_29 PF13555.6 gi|218883356|ref|YP_002427738.1| - 0.083 12.6 0.0 18 5.2 0.0 2.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain Cytidylate_kin2 PF13189.6 gi|218883356|ref|YP_002427738.1| - 0.095 12.8 0.0 2.5 8.2 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family ResIII PF04851.15 gi|218883356|ref|YP_002427738.1| - 0.1 12.6 0.0 19 5.2 0.0 2.7 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit Hydin_ADK PF17213.3 gi|218883356|ref|YP_002427738.1| - 0.11 12.7 0.2 6.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Viral_helicase1 PF01443.18 gi|218883356|ref|YP_002427738.1| - 0.15 11.8 0.0 3.7 7.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATPase PF06745.13 gi|218883357|ref|YP_002427739.1| - 2.7e-89 298.5 0.1 3.4e-89 298.2 0.1 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|218883357|ref|YP_002427739.1| - 7.1e-08 32.3 0.0 1.2e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|218883357|ref|YP_002427739.1| - 6.6e-05 22.3 0.2 0.0026 17.1 0.0 2.2 2 0 0 2 2 2 1 Rad51 GvpD PF07088.11 gi|218883357|ref|YP_002427739.1| - 0.00018 20.3 0.1 0.00026 19.8 0.1 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.21 gi|218883357|ref|YP_002427739.1| - 0.00075 19.0 0.4 0.12 11.9 0.0 2.7 3 0 0 3 3 3 1 recA bacterial DNA recombination protein AAA_16 PF13191.6 gi|218883357|ref|YP_002427739.1| - 0.0018 18.7 0.0 0.0026 18.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|218883357|ref|YP_002427739.1| - 0.0035 16.4 0.0 0.0061 15.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF2075 PF09848.9 gi|218883357|ref|YP_002427739.1| - 0.0036 16.6 0.8 0.034 13.4 0.2 2.0 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.15 gi|218883357|ref|YP_002427739.1| - 0.01 15.2 0.0 0.015 14.7 0.0 1.4 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA PF00004.29 gi|218883357|ref|YP_002427739.1| - 0.014 15.8 0.3 0.027 14.9 0.3 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|218883357|ref|YP_002427739.1| - 0.031 14.6 1.4 0.11 12.8 1.3 2.1 1 1 0 1 1 1 0 AAA domain MEDS PF14417.6 gi|218883357|ref|YP_002427739.1| - 0.031 14.1 0.0 0.068 13.0 0.0 1.5 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_24 PF13479.6 gi|218883357|ref|YP_002427739.1| - 0.044 13.5 0.5 0.28 10.9 0.3 2.2 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|218883357|ref|YP_002427739.1| - 0.046 14.0 0.0 0.11 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|218883357|ref|YP_002427739.1| - 0.067 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_28 PF13521.6 gi|218883357|ref|YP_002427739.1| - 0.081 13.2 0.4 0.19 12.0 0.2 1.8 1 1 1 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|218883357|ref|YP_002427739.1| - 0.1 12.6 0.0 0.19 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|218883357|ref|YP_002427739.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Flavoprotein PF02441.19 gi|218883359|ref|YP_002427741.1| - 3.3e-22 78.9 0.1 5.1e-22 78.3 0.1 1.3 1 0 0 1 1 1 1 Flavoprotein tRNA_int_endo PF01974.17 gi|218883361|ref|YP_002427743.1| - 1e-24 86.3 0.0 1.2e-24 86.1 0.0 1.0 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain PhoU_div PF01865.16 gi|218883362|ref|YP_002427744.1| - 2.1e-13 50.1 7.7 2.6e-13 49.8 7.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|218883362|ref|YP_002427744.1| - 0.00015 22.2 5.4 0.0067 16.9 0.3 2.3 2 0 0 2 2 2 2 PhoU domain Plk4_PB2 PF18409.1 gi|218883362|ref|YP_002427744.1| - 0.0061 17.2 1.0 0.015 15.9 0.6 1.9 1 1 0 1 1 1 1 Polo-like Kinase 4 Polo Box 2 TRPM_tetra PF16519.5 gi|218883362|ref|YP_002427744.1| - 0.0068 16.5 7.4 0.06 13.5 0.4 2.8 2 0 0 2 2 2 1 Tetramerisation domain of TRPM His_kinase PF06580.13 gi|218883362|ref|YP_002427744.1| - 0.13 12.6 3.4 0.35 11.2 0.1 2.8 3 0 0 3 3 3 0 Histidine kinase DUF948 PF06103.11 gi|218883362|ref|YP_002427744.1| - 0.15 12.3 2.1 2.8 8.3 0.6 3.1 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) AI-2E_transport PF01594.16 gi|218883362|ref|YP_002427744.1| - 0.17 11.0 0.6 0.27 10.4 0.6 1.3 1 0 0 1 1 1 0 AI-2E family transporter BLYB PF05289.11 gi|218883362|ref|YP_002427744.1| - 0.34 11.1 6.9 0.34 11.1 1.2 2.9 2 1 0 2 2 2 0 Borrelia hemolysin accessory protein NPV_P10 PF05531.12 gi|218883362|ref|YP_002427744.1| - 0.83 10.2 5.1 13 6.3 3.0 3.1 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|218883362|ref|YP_002427744.1| - 1 9.4 5.4 0.48 10.5 0.8 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|218883362|ref|YP_002427744.1| - 1.6 8.9 9.5 2 8.6 1.2 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Radical_SAM PF04055.21 gi|218883363|ref|YP_002427745.1| - 3.3e-15 56.9 1.6 3.5e-14 53.5 0.7 3.0 1 1 2 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|218883363|ref|YP_002427745.1| - 1.3e-06 28.5 0.0 2.8e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain PPIP5K2_N PF18086.1 gi|218883364|ref|YP_002427746.1| - 0.048 13.8 0.0 0.078 13.1 0.0 1.3 1 0 0 1 1 1 0 Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain Molydop_binding PF01568.21 gi|218883365|ref|YP_002427747.1| - 0.0031 17.5 0.0 0.004 17.2 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain HGTP_anticodon PF03129.20 gi|218883366|ref|YP_002427748.1| - 7.2e-24 83.8 0.3 1.8e-23 82.5 0.3 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|218883366|ref|YP_002427748.1| - 5.7e-12 46.0 0.0 2.9e-11 43.7 0.0 2.1 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-C2H2 PF00096.26 gi|218883366|ref|YP_002427748.1| - 0.045 14.2 1.2 52 4.6 0.1 3.5 3 0 0 3 3 3 0 Zinc finger, C2H2 type ADK_lid PF05191.14 gi|218883366|ref|YP_002427748.1| - 0.063 13.3 0.0 0.16 12.0 0.0 1.7 1 1 0 1 1 1 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|218883366|ref|YP_002427748.1| - 0.33 11.1 1.1 2.8 8.1 1.1 2.2 1 1 0 1 1 1 0 Zinc ribbon domain HMA PF00403.26 gi|218883366|ref|YP_002427748.1| - 0.68 10.4 2.3 2.6 8.6 0.7 2.3 2 0 0 2 2 2 0 Heavy-metal-associated domain Arginase PF00491.21 gi|218883367|ref|YP_002427749.1| - 7.4e-62 209.4 0.0 9.8e-62 209.0 0.0 1.0 1 0 0 1 1 1 1 Arginase family PLD_C PF12357.8 gi|218883367|ref|YP_002427749.1| - 0.17 11.8 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Phospholipase D C terminal Zn-ribbon_8 PF09723.10 gi|218883368|ref|YP_002427750.1| - 4.6e-05 23.5 1.8 5.7e-05 23.1 1.8 1.2 1 0 0 1 1 1 1 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|218883368|ref|YP_002427750.1| - 0.00014 21.5 7.2 0.00093 18.8 7.2 2.0 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|218883368|ref|YP_002427750.1| - 0.00024 21.0 0.6 0.48 10.4 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|218883368|ref|YP_002427750.1| - 0.00097 19.1 1.9 0.029 14.3 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Rubredoxin PF00301.20 gi|218883368|ref|YP_002427750.1| - 0.0012 18.9 3.2 0.018 15.0 0.5 2.1 2 0 0 2 2 2 1 Rubredoxin TF_Zn_Ribbon PF08271.12 gi|218883368|ref|YP_002427750.1| - 0.0031 17.0 1.3 0.41 10.2 0.1 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_5 PF13719.6 gi|218883368|ref|YP_002427750.1| - 0.0049 16.6 5.6 0.067 13.0 0.5 2.2 1 1 1 2 2 2 2 zinc-ribbon domain zf-RING_7 PF02591.15 gi|218883368|ref|YP_002427750.1| - 0.0088 16.2 0.9 0.012 15.8 0.9 1.2 1 0 0 1 1 1 1 C4-type zinc ribbon domain HypA PF01155.19 gi|218883368|ref|YP_002427750.1| - 0.012 15.6 0.3 0.012 15.6 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|218883368|ref|YP_002427750.1| - 0.014 15.1 0.2 0.015 14.9 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-RING_2 PF13639.6 gi|218883368|ref|YP_002427750.1| - 0.018 15.4 0.3 0.022 15.1 0.3 1.2 1 0 0 1 1 1 0 Ring finger domain DZR PF12773.7 gi|218883368|ref|YP_002427750.1| - 0.022 14.8 0.4 0.031 14.3 0.4 1.3 1 1 0 1 1 1 0 Double zinc ribbon DUF4379 PF14311.6 gi|218883368|ref|YP_002427750.1| - 0.024 15.0 0.4 0.03 14.7 0.4 1.1 1 0 0 1 1 1 0 Probable Zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|218883368|ref|YP_002427750.1| - 0.031 14.2 2.0 1.9 8.4 0.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2 PF00096.26 gi|218883368|ref|YP_002427750.1| - 0.033 14.6 2.5 0.54 10.8 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type OrfB_Zn_ribbon PF07282.11 gi|218883368|ref|YP_002427750.1| - 0.034 14.1 1.7 0.053 13.4 1.7 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Rtf2 PF04641.12 gi|218883368|ref|YP_002427750.1| - 0.04 13.3 0.5 0.043 13.2 0.5 1.0 1 0 0 1 1 1 0 Rtf2 RING-finger zf_UBZ PF18439.1 gi|218883368|ref|YP_002427750.1| - 0.058 13.0 2.2 0.49 10.0 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger TFIIS_C PF01096.18 gi|218883368|ref|YP_002427750.1| - 0.061 13.2 2.9 4.7 7.2 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) VirDNA-topo-I_N PF09266.10 gi|218883368|ref|YP_002427750.1| - 0.1 12.8 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Viral DNA topoisomerase I, N-terminal zf-H2C2_2 PF13465.6 gi|218883368|ref|YP_002427750.1| - 0.1 13.1 3.4 3.3 8.3 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain UPF0547 PF10571.9 gi|218883368|ref|YP_002427750.1| - 0.11 12.7 5.4 0.63 10.2 0.7 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2_4 PF13894.6 gi|218883368|ref|YP_002427750.1| - 0.23 12.4 1.7 4.7 8.3 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin_2 PF18073.1 gi|218883368|ref|YP_002427750.1| - 0.28 11.0 4.1 3.3 7.5 1.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_13 PF09855.9 gi|218883368|ref|YP_002427750.1| - 1.2 9.4 6.0 1.2 9.4 0.5 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-Mss51 PF13824.6 gi|218883368|ref|YP_002427750.1| - 1.5 9.0 4.0 3.8 7.7 0.3 2.1 1 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Mu-like_Com PF10122.9 gi|218883368|ref|YP_002427750.1| - 2.9 7.4 6.1 10 5.7 0.5 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com SUI1 PF01253.22 gi|218883369|ref|YP_002427751.1| - 5.3e-20 71.7 0.3 6.3e-20 71.5 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|218883369|ref|YP_002427751.1| - 0.091 13.1 0.1 0.11 12.8 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) TFIIB PF00382.19 gi|218883370|ref|YP_002427752.1| - 3.5e-38 129.5 0.8 4.9e-19 68.1 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|218883370|ref|YP_002427752.1| - 6.3e-11 41.6 0.3 1.1e-10 40.8 0.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|218883370|ref|YP_002427752.1| - 2.8e-07 30.7 0.0 0.022 14.9 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|218883370|ref|YP_002427752.1| - 0.00015 21.2 2.2 0.0012 18.3 0.1 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 TFIIB_C_1 PF18542.1 gi|218883370|ref|YP_002427752.1| - 0.00047 20.1 1.3 0.13 12.3 0.4 2.4 2 0 0 2 2 2 2 Transcription factor IIB C-terminal module 1 HTH_Tnp_ISL3 PF13542.6 gi|218883370|ref|YP_002427752.1| - 0.0025 17.2 0.2 0.069 12.6 0.0 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_AsnC-type PF13404.6 gi|218883370|ref|YP_002427752.1| - 0.017 15.0 0.0 0.062 13.1 0.0 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.20 gi|218883370|ref|YP_002427752.1| - 0.02 15.3 0.4 10 6.5 0.1 2.5 2 0 0 2 2 2 0 Transcriptional regulator Cyclin_N PF00134.23 gi|218883370|ref|YP_002427752.1| - 0.027 14.2 0.1 1.4 8.7 0.1 2.7 2 1 0 3 3 3 0 Cyclin, N-terminal domain Sigma70_r4_2 PF08281.12 gi|218883370|ref|YP_002427752.1| - 0.041 13.6 1.4 0.15 11.8 0.1 2.7 3 1 0 3 3 3 0 Sigma-70, region 4 RB_B PF01857.20 gi|218883370|ref|YP_002427752.1| - 0.058 13.4 0.1 0.1 12.6 0.1 1.4 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain A2L_zn_ribbon PF08792.10 gi|218883370|ref|YP_002427752.1| - 0.068 12.9 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF188 PF02639.14 gi|218883370|ref|YP_002427752.1| - 0.075 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 CTP_synth_N PF06418.14 gi|218883371|ref|YP_002427753.1| - 9.1e-121 402.2 0.0 1.2e-120 401.8 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|218883371|ref|YP_002427753.1| - 2.1e-40 138.6 0.0 3.1e-40 138.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|218883371|ref|YP_002427753.1| - 2.7e-11 43.7 0.0 5e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|218883371|ref|YP_002427753.1| - 0.0052 16.8 0.0 0.0079 16.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|218883371|ref|YP_002427753.1| - 0.2 10.8 0.1 0.41 9.8 0.0 1.6 2 0 0 2 2 2 0 Anion-transporting ATPase Pribosyltran PF00156.27 gi|218883372|ref|YP_002427754.1| - 5.6e-24 84.5 0.0 7.1e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|218883372|ref|YP_002427754.1| - 0.0022 17.5 0.0 0.0027 17.2 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 gi|218883372|ref|YP_002427754.1| - 0.062 13.3 0.0 0.091 12.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain tRNA_SAD PF07973.14 gi|218883373|ref|YP_002427755.1| - 9.2e-12 44.9 1.1 1e-11 44.7 0.1 1.6 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|218883373|ref|YP_002427755.1| - 1.4e-08 33.7 0.0 2e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) HEPN PF05168.14 gi|218883375|ref|YP_002427757.1| - 0.1 12.7 0.5 0.16 12.1 0.5 1.3 1 0 0 1 1 1 0 HEPN domain PhoU PF01895.19 gi|218883377|ref|YP_002427759.1| - 3.9e-12 46.4 10.4 1.9e-06 28.2 0.8 2.4 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.16 gi|218883377|ref|YP_002427759.1| - 0.00046 19.6 4.0 0.0033 16.8 0.2 2.1 2 0 0 2 2 2 2 Protein of unknown function DUF47 DUF1854 PF08909.11 gi|218883377|ref|YP_002427759.1| - 0.15 11.9 1.8 1.1 9.1 0.4 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1854) ABC_tran PF00005.27 gi|218883378|ref|YP_002427760.1| - 1.5e-32 112.9 0.0 2e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883378|ref|YP_002427760.1| - 6.5e-11 42.6 0.1 3.6e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218883378|ref|YP_002427760.1| - 1.4e-07 31.1 0.1 0.00042 19.8 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|218883378|ref|YP_002427760.1| - 0.00021 21.0 0.0 0.00045 19.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|218883378|ref|YP_002427760.1| - 0.00056 20.2 0.0 0.0015 18.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|218883378|ref|YP_002427760.1| - 0.00061 20.2 0.0 0.0012 19.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|218883378|ref|YP_002427760.1| - 0.00087 19.2 0.0 0.0018 18.2 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|218883378|ref|YP_002427760.1| - 0.00089 19.1 0.2 0.086 12.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Adeno_IVa2 PF02456.15 gi|218883378|ref|YP_002427760.1| - 0.00092 18.1 0.1 0.0043 15.9 0.1 1.8 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_23 PF13476.6 gi|218883378|ref|YP_002427760.1| - 0.0028 18.2 0.4 0.017 15.6 0.1 2.0 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|218883378|ref|YP_002427760.1| - 0.0099 15.8 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|218883378|ref|YP_002427760.1| - 0.01 15.6 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|218883378|ref|YP_002427760.1| - 0.018 14.8 0.0 0.052 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|218883378|ref|YP_002427760.1| - 0.023 14.6 0.1 0.29 11.0 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain TniB PF05621.11 gi|218883378|ref|YP_002427760.1| - 0.024 14.1 0.2 0.67 9.3 0.0 2.6 1 1 1 2 2 2 0 Bacterial TniB protein AAA_18 PF13238.6 gi|218883378|ref|YP_002427760.1| - 0.07 13.7 0.0 0.13 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|218883378|ref|YP_002427760.1| - 0.085 11.9 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|218883378|ref|YP_002427760.1| - 0.097 13.1 0.0 0.19 12.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|218883378|ref|YP_002427760.1| - 0.12 12.3 0.0 0.31 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|218883378|ref|YP_002427760.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|218883378|ref|YP_002427760.1| - 0.14 12.1 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF3987 PF13148.6 gi|218883378|ref|YP_002427760.1| - 0.17 10.8 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) BPD_transp_1 PF00528.22 gi|218883379|ref|YP_002427761.1| - 5.2e-13 49.1 15.9 5.2e-13 49.1 15.9 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2830 PF11125.8 gi|218883379|ref|YP_002427761.1| - 3.1 7.8 5.4 1.9 8.5 0.4 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2830) BPD_transp_1 PF00528.22 gi|218883380|ref|YP_002427762.1| - 2.3e-09 37.3 14.3 3.9e-09 36.5 14.3 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF4282 PF14110.6 gi|218883380|ref|YP_002427762.1| - 0.4 11.5 7.6 6 7.7 0.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) PBP_like_2 PF12849.7 gi|218883382|ref|YP_002427764.1| - 5.4e-52 177.2 0.0 7.2e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|218883382|ref|YP_002427764.1| - 1.4e-09 38.4 0.0 1.9e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|218883382|ref|YP_002427764.1| - 0.00039 19.6 0.0 0.0021 17.2 0.0 2.0 1 1 0 1 1 1 1 PBP superfamily domain DUF4538 PF15061.6 gi|218883382|ref|YP_002427764.1| - 0.45 10.3 0.1 0.45 10.3 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) PhoU PF01895.19 gi|218883383|ref|YP_002427765.1| - 9.6e-06 26.0 0.6 9.6e-06 26.0 0.6 2.4 2 0 0 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|218883383|ref|YP_002427765.1| - 6.4e-05 22.8 0.0 0.00031 20.6 0.0 2.3 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin FeoB_N PF02421.18 gi|218883384|ref|YP_002427766.1| - 4.6e-47 159.4 0.4 8.4e-47 158.6 0.1 1.6 2 0 0 2 2 2 1 Ferrous iron transport protein B Gate PF07670.14 gi|218883384|ref|YP_002427766.1| - 6.8e-22 77.9 18.4 1.6e-18 67.0 7.1 3.9 4 1 1 5 5 4 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|218883384|ref|YP_002427766.1| - 9.2e-19 67.6 0.0 1.9e-18 66.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|218883384|ref|YP_002427766.1| - 1.3e-09 38.5 0.1 2.8e-09 37.4 0.1 1.5 1 0 0 1 1 1 1 FeoB cytosolic helical domain FeoB_C PF07664.12 gi|218883384|ref|YP_002427766.1| - 1e-05 25.1 5.3 1.8e-05 24.3 0.6 3.2 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus RsgA_GTPase PF03193.16 gi|218883384|ref|YP_002427766.1| - 1.1e-05 25.4 0.4 0.17 11.8 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase Ras PF00071.22 gi|218883384|ref|YP_002427766.1| - 0.0019 17.8 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 gi|218883384|ref|YP_002427766.1| - 0.0041 16.6 0.1 0.007 15.8 0.1 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|218883384|ref|YP_002427766.1| - 0.028 14.6 0.0 0.054 13.7 0.0 1.6 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase SRP54 PF00448.22 gi|218883384|ref|YP_002427766.1| - 0.053 13.2 0.1 0.088 12.4 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain GTP_EFTU PF00009.27 gi|218883384|ref|YP_002427766.1| - 0.11 12.1 0.1 1.2 8.6 0.2 2.3 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain FeoA PF04023.14 gi|218883385|ref|YP_002427767.1| - 1.4e-16 60.5 0.1 1.5e-16 60.4 0.1 1.0 1 0 0 1 1 1 1 FeoA domain Zip PF02535.22 gi|218883387|ref|YP_002427769.1| - 1.4e-13 50.8 13.6 1.4e-13 50.8 13.6 2.3 1 1 0 2 2 2 1 ZIP Zinc transporter Lip_prot_lig_C PF10437.9 gi|218883388|ref|YP_002427770.1| - 7e-07 29.2 0.3 8.6e-07 28.9 0.3 1.1 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus BPL_LplA_LipB PF03099.19 gi|218883389|ref|YP_002427771.1| - 7e-12 45.4 0.0 1.1e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Radical_SAM PF04055.21 gi|218883390|ref|YP_002427772.1| - 8.5e-10 39.3 4.3 7.8e-09 36.1 1.9 2.8 2 1 0 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|218883391|ref|YP_002427773.1| - 0.00016 22.1 0.1 0.00037 20.9 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Peptidase_S24 PF00717.23 gi|218883394|ref|YP_002427776.1| - 0.012 15.6 0.0 0.027 14.4 0.0 1.6 1 0 0 1 1 1 0 Peptidase S24-like MpPF26 PF07666.11 gi|218883395|ref|YP_002427777.1| - 0.11 12.7 3.4 11 6.1 0.0 2.3 2 0 0 2 2 2 0 M penetrans paralogue family 26 Tetraspanin PF00335.20 gi|218883395|ref|YP_002427777.1| - 3.1 7.5 6.0 7.8 6.1 0.0 2.3 2 1 0 2 2 2 0 Tetraspanin family Tox-HNH-HHH PF15637.6 gi|218883398|ref|YP_002427780.1| - 0.046 13.9 0.0 0.062 13.5 0.0 1.2 1 0 0 1 1 1 0 HNH/Endo VII superfamily nuclease toxin with a HHH motif Anthrax-tox_M PF09156.10 gi|218883399|ref|YP_002427781.1| - 0.047 13.0 0.1 0.07 12.5 0.1 1.2 1 0 0 1 1 1 0 Anthrax toxin lethal factor, middle domain HTH_23 PF13384.6 gi|218883402|ref|YP_002427784.1| - 0.043 13.6 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain PAS_10 PF13596.6 gi|218883403|ref|YP_002427785.1| - 2e-13 50.8 0.0 2.4e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|218883403|ref|YP_002427785.1| - 0.0056 16.9 0.0 0.0064 16.7 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|218883403|ref|YP_002427785.1| - 0.069 13.4 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 PAS domain LSM PF01423.22 gi|218883408|ref|YP_002427790.1| - 2e-17 62.6 0.0 2.3e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 LSM domain LSM14 PF12701.7 gi|218883408|ref|YP_002427790.1| - 0.0012 18.9 0.1 0.0018 18.3 0.1 1.2 1 0 0 1 1 1 1 Scd6-like Sm domain SM-ATX PF14438.6 gi|218883408|ref|YP_002427790.1| - 0.014 15.5 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain Methyltransf_11 PF08241.12 gi|218883409|ref|YP_002427791.1| - 7.6e-18 65.0 0.0 1.1e-17 64.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|218883409|ref|YP_002427791.1| - 7.1e-16 58.7 0.0 1.6e-15 57.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|218883409|ref|YP_002427791.1| - 3.9e-11 43.0 0.0 4.7e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|218883409|ref|YP_002427791.1| - 7.3e-11 42.7 0.0 1.2e-10 42.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|218883409|ref|YP_002427791.1| - 1.4e-09 37.9 0.0 1.9e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|218883409|ref|YP_002427791.1| - 9.7e-08 31.6 0.0 1.2e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|218883409|ref|YP_002427791.1| - 0.0014 18.2 0.1 0.0034 17.0 0.1 1.6 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|218883409|ref|YP_002427791.1| - 0.029 14.2 0.1 0.11 12.3 0.1 1.7 1 1 0 1 1 1 0 Hypothetical methyltransferase MTS PF05175.14 gi|218883409|ref|YP_002427791.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain NucS PF01939.16 gi|218883410|ref|YP_002427792.1| - 6.7e-11 42.0 0.0 7e-11 41.9 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS Glycos_transf_1 PF00534.20 gi|218883411|ref|YP_002427793.1| - 3.3e-25 88.6 0.0 4.8e-25 88.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|218883411|ref|YP_002427793.1| - 9.3e-16 58.5 0.1 2.2e-15 57.3 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|218883411|ref|YP_002427793.1| - 2.1e-07 31.3 0.0 6.6e-07 29.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Nodulin-like PF06813.13 gi|218883412|ref|YP_002427794.1| - 0.019 14.4 1.4 0.023 14.2 1.4 1.1 1 0 0 1 1 1 0 Nodulin-like DHODB_Fe-S_bind PF10418.9 gi|218883413|ref|YP_002427795.1| - 1.5e-11 43.9 0.7 2.6e-11 43.2 0.7 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.6 gi|218883413|ref|YP_002427795.1| - 0.022 14.8 0.4 0.048 13.7 0.4 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_2 PF07992.14 gi|218883414|ref|YP_002427796.1| - 5.8e-39 134.1 0.0 8.5e-39 133.5 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 gi|218883414|ref|YP_002427796.1| - 1.2e-33 115.3 0.0 1.8e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.27 gi|218883414|ref|YP_002427796.1| - 1.8e-12 47.6 2.5 6.4e-07 29.8 0.0 3.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|218883414|ref|YP_002427796.1| - 2.4e-10 40.2 0.0 3.5e-07 29.8 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|218883414|ref|YP_002427796.1| - 5.5e-08 32.9 0.4 3.7e-07 30.3 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|218883414|ref|YP_002427796.1| - 1.8e-05 24.2 0.4 0.00044 19.6 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|218883414|ref|YP_002427796.1| - 2.3e-05 24.2 2.6 0.017 14.7 0.8 3.8 2 2 2 4 4 4 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|218883414|ref|YP_002427796.1| - 3.1e-05 23.4 0.1 0.13 11.6 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|218883414|ref|YP_002427796.1| - 0.00046 19.6 3.4 0.088 12.1 0.2 3.0 4 0 0 4 4 4 2 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|218883414|ref|YP_002427796.1| - 0.00075 18.7 1.1 0.0027 16.8 0.6 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|218883414|ref|YP_002427796.1| - 0.0013 17.5 0.3 0.0063 15.3 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein PALP PF00291.25 gi|218883414|ref|YP_002427796.1| - 0.003 17.0 0.0 2.3 7.6 0.0 2.3 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme FAD_oxidored PF12831.7 gi|218883414|ref|YP_002427796.1| - 0.0034 16.8 1.4 0.2 11.0 0.2 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|218883414|ref|YP_002427796.1| - 0.01 15.1 0.1 0.01 15.1 0.1 1.7 2 0 0 2 2 2 0 Thi4 family NAD_binding_7 PF13241.6 gi|218883414|ref|YP_002427796.1| - 0.017 15.6 1.1 0.1 13.1 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|218883414|ref|YP_002427796.1| - 0.06 12.7 0.0 4.3 6.6 0.0 2.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDA PF01134.22 gi|218883414|ref|YP_002427796.1| - 0.067 12.3 0.0 1.3 8.0 0.0 2.6 3 0 0 3 3 3 0 Glucose inhibited division protein A Fer4_10 PF13237.6 gi|218883414|ref|YP_002427796.1| - 0.37 10.9 2.5 0.96 9.6 2.6 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain NTPase_I-T PF01931.18 gi|218883415|ref|YP_002427797.1| - 8.1e-37 126.5 0.0 9.1e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 POR PF01558.18 gi|218883416|ref|YP_002427798.1| - 1.2e-07 32.0 0.2 1.2e-07 32.0 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR PF01558.18 gi|218883417|ref|YP_002427799.1| - 2.3e-14 53.9 0.1 2.4e-14 53.8 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase NucS PF01939.16 gi|218883418|ref|YP_002427800.1| - 5.1e-19 68.5 0.0 6.9e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 Endonuclease NucS Fer4 PF00037.27 gi|218883418|ref|YP_002427800.1| - 6.9e-08 32.0 3.7 6.9e-08 32.0 3.7 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|218883418|ref|YP_002427800.1| - 1.1e-07 31.9 8.0 8.7e-06 25.8 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218883418|ref|YP_002427800.1| - 5.7e-07 29.3 9.1 7e-05 22.7 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|218883418|ref|YP_002427800.1| - 3e-05 24.1 6.8 6e-05 23.1 6.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|218883418|ref|YP_002427800.1| - 3.2e-05 23.8 13.4 0.00019 21.3 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|218883418|ref|YP_002427800.1| - 5e-05 23.3 20.2 0.0011 19.0 2.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|218883418|ref|YP_002427800.1| - 5.5e-05 23.4 9.9 0.0032 17.8 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|218883418|ref|YP_002427800.1| - 0.00023 22.0 7.9 0.0031 18.4 1.4 2.4 1 1 2 3 3 3 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|218883418|ref|YP_002427800.1| - 0.00039 21.0 10.9 0.0048 17.5 11.0 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|218883418|ref|YP_002427800.1| - 0.0049 17.7 4.1 0.0049 17.7 4.1 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|218883418|ref|YP_002427800.1| - 0.018 15.6 8.2 0.019 15.5 1.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|218883418|ref|YP_002427800.1| - 0.12 12.9 7.9 0.41 11.2 2.5 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|218883418|ref|YP_002427800.1| - 0.34 11.4 8.9 12 6.5 8.9 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|218883418|ref|YP_002427800.1| - 9.6 7.0 9.9 3.7 8.3 4.1 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF1664 PF07889.12 gi|218883419|ref|YP_002427801.1| - 0.0096 16.0 0.6 0.017 15.1 0.6 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) Phasin PF05597.11 gi|218883419|ref|YP_002427801.1| - 0.017 15.1 0.8 0.033 14.2 0.8 1.5 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) HD_3 PF13023.6 gi|218883419|ref|YP_002427801.1| - 0.093 12.7 0.7 5.5 6.9 0.1 2.2 2 0 0 2 2 2 0 HD domain Octopine_DH PF02317.17 gi|218883419|ref|YP_002427801.1| - 0.1 12.7 0.1 0.84 9.7 0.0 2.0 2 0 0 2 2 2 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain TRAF_BIRC3_bd PF16673.5 gi|218883419|ref|YP_002427801.1| - 0.16 11.8 4.8 0.2 11.5 0.6 2.5 1 1 1 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain COMPASS-Shg1 PF05205.12 gi|218883419|ref|YP_002427801.1| - 0.34 11.6 4.4 0.31 11.8 0.7 2.5 1 1 1 3 3 3 0 COMPASS (Complex proteins associated with Set1p) component shg1 CRR7 PF12095.8 gi|218883419|ref|YP_002427801.1| - 0.78 10.2 3.6 1.9 9.0 0.3 2.4 3 0 0 3 3 3 0 Protein CHLORORESPIRATORY REDUCTION 7 CdvA PF18822.1 gi|218883419|ref|YP_002427801.1| - 0.83 9.5 8.4 5.1 6.9 2.6 2.8 2 1 0 2 2 2 0 CdvA-like coiled-coil domain Lactamase_B_2 PF12706.7 gi|218883420|ref|YP_002427802.1| - 2.1e-05 24.1 0.0 7.5e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|218883420|ref|YP_002427802.1| - 4.1e-05 23.7 0.4 0.00046 20.3 0.4 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|218883420|ref|YP_002427802.1| - 0.0076 16.8 0.0 0.74 10.4 0.0 3.2 2 1 0 2 2 2 1 Rhodanese-like domain RMMBL PF07521.12 gi|218883420|ref|YP_002427802.1| - 0.11 12.5 0.0 0.32 10.9 0.0 1.8 1 0 0 1 1 1 0 Zn-dependent metallo-hydrolase RNA specificity domain Glycos_transf_1 PF00534.20 gi|218883421|ref|YP_002427803.1| - 2.7e-26 92.1 0.0 5.1e-26 91.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|218883421|ref|YP_002427803.1| - 1.3e-14 54.7 0.0 2e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|218883421|ref|YP_002427803.1| - 3.7e-05 23.8 0.0 0.0008 19.4 0.0 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|218883421|ref|YP_002427803.1| - 0.024 15.0 0.0 0.047 14.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF3966 PF13110.6 gi|218883421|ref|YP_002427803.1| - 0.15 12.0 0.1 0.29 11.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3966) CbiQ PF02361.16 gi|218883422|ref|YP_002427804.1| - 6.1e-10 39.1 9.1 6.1e-10 39.1 9.1 1.4 2 0 0 2 2 2 1 Cobalt transport protein TraX PF05857.11 gi|218883422|ref|YP_002427804.1| - 0.14 12.2 6.5 2.3 8.2 0.1 2.2 2 0 0 2 2 2 0 TraX protein ABC_tran PF00005.27 gi|218883423|ref|YP_002427805.1| - 5.3e-40 137.1 0.0 8.5e-19 68.4 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|218883423|ref|YP_002427805.1| - 2.7e-24 86.5 8.7 2.1e-09 37.6 0.1 4.1 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218883423|ref|YP_002427805.1| - 4.7e-15 55.6 0.9 0.00091 18.7 0.0 4.1 3 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|218883423|ref|YP_002427805.1| - 4.3e-09 36.0 0.8 0.00068 19.3 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|218883423|ref|YP_002427805.1| - 1.3e-08 35.0 0.8 0.0013 18.6 0.0 3.4 2 2 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|218883423|ref|YP_002427805.1| - 3.6e-07 30.5 0.3 0.0024 18.2 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.6 gi|218883423|ref|YP_002427805.1| - 5.1e-07 29.5 0.2 0.01 15.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|218883423|ref|YP_002427805.1| - 1.4e-06 29.0 0.0 0.0069 16.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|218883423|ref|YP_002427805.1| - 3.3e-06 27.3 0.1 0.00085 19.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|218883423|ref|YP_002427805.1| - 8.4e-06 26.3 0.7 0.027 14.8 0.0 2.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|218883423|ref|YP_002427805.1| - 2.3e-05 24.2 0.0 0.0071 16.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|218883423|ref|YP_002427805.1| - 5.9e-05 23.1 1.8 0.043 13.7 0.1 2.8 3 0 0 3 3 2 2 NACHT domain IstB_IS21 PF01695.17 gi|218883423|ref|YP_002427805.1| - 8e-05 22.4 0.1 0.46 10.2 0.0 3.6 4 0 0 4 4 4 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|218883423|ref|YP_002427805.1| - 0.00012 22.0 0.1 0.013 15.4 0.0 2.5 2 0 0 2 2 2 1 RsgA GTPase T2SSE PF00437.20 gi|218883423|ref|YP_002427805.1| - 0.00016 20.9 0.2 0.38 9.8 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA PF00004.29 gi|218883423|ref|YP_002427805.1| - 0.0003 21.2 1.4 0.18 12.2 0.0 3.7 4 1 1 5 5 4 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|218883423|ref|YP_002427805.1| - 0.00039 20.0 0.1 0.23 11.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_24 PF13479.6 gi|218883423|ref|YP_002427805.1| - 0.00043 20.1 1.3 0.33 10.7 0.1 2.4 2 0 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.18 gi|218883423|ref|YP_002427805.1| - 0.0017 17.8 0.3 1.1 8.5 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family Mg_chelatase PF01078.21 gi|218883423|ref|YP_002427805.1| - 0.002 17.5 0.6 0.36 10.2 0.0 2.6 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|218883423|ref|YP_002427805.1| - 0.0028 17.6 0.2 1 9.2 0.0 2.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|218883423|ref|YP_002427805.1| - 0.0033 18.0 1.9 0.22 12.1 0.1 3.1 3 1 0 3 3 2 1 AAA domain AAA_14 PF13173.6 gi|218883423|ref|YP_002427805.1| - 0.0038 17.3 0.1 0.39 10.8 0.0 3.3 4 0 0 4 4 3 1 AAA domain RNA_helicase PF00910.22 gi|218883423|ref|YP_002427805.1| - 0.0043 17.4 0.0 0.66 10.4 0.0 2.6 2 0 0 2 2 2 1 RNA helicase AAA_5 PF07728.14 gi|218883423|ref|YP_002427805.1| - 0.0046 17.0 0.9 0.2 11.6 0.0 2.7 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|218883423|ref|YP_002427805.1| - 0.0048 17.2 0.1 0.032 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain Pox_A32 PF04665.12 gi|218883423|ref|YP_002427805.1| - 0.0058 16.1 1.1 0.36 10.3 0.1 2.3 2 0 0 2 2 2 1 Poxvirus A32 protein AAA_19 PF13245.6 gi|218883423|ref|YP_002427805.1| - 0.0076 16.6 0.4 5.9 7.2 0.0 2.6 3 0 0 3 3 2 0 AAA domain cobW PF02492.19 gi|218883423|ref|YP_002427805.1| - 0.009 15.6 2.5 0.58 9.7 0.3 2.6 3 0 0 3 3 2 1 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|218883423|ref|YP_002427805.1| - 0.015 15.2 1.1 2 8.3 0.1 2.6 2 0 0 2 2 2 0 NTPase TsaE PF02367.17 gi|218883423|ref|YP_002427805.1| - 0.019 14.9 0.3 1 9.4 0.1 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 gi|218883423|ref|YP_002427805.1| - 0.023 14.6 0.0 1.3 8.9 0.0 2.5 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_11 PF13086.6 gi|218883423|ref|YP_002427805.1| - 0.024 14.4 0.0 0.69 9.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|218883423|ref|YP_002427805.1| - 0.031 14.0 1.2 2.2 8.0 0.1 2.6 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|218883423|ref|YP_002427805.1| - 0.035 14.0 2.0 3.4 7.6 0.1 2.8 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|218883423|ref|YP_002427805.1| - 0.051 12.8 0.6 0.9 8.7 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain PRK PF00485.18 gi|218883423|ref|YP_002427805.1| - 0.074 12.8 0.0 8.6 6.0 0.1 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Dynamin_N PF00350.23 gi|218883423|ref|YP_002427805.1| - 0.076 13.1 0.0 0.2 11.7 0.0 1.7 2 0 0 2 2 1 0 Dynamin family AAA_10 PF12846.7 gi|218883423|ref|YP_002427805.1| - 0.078 11.9 0.1 0.59 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain ATPase PF06745.13 gi|218883423|ref|YP_002427805.1| - 0.087 12.2 0.5 4.9 6.4 0.1 2.3 2 0 0 2 2 2 0 KaiC Zeta_toxin PF06414.12 gi|218883423|ref|YP_002427805.1| - 0.091 12.0 0.1 3.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin SRP54 PF00448.22 gi|218883423|ref|YP_002427805.1| - 0.11 12.1 1.4 0.32 10.6 0.2 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Cytidylate_kin PF02224.18 gi|218883423|ref|YP_002427805.1| - 0.11 12.2 0.2 0.8 9.4 0.0 2.1 2 0 0 2 2 2 0 Cytidylate kinase AAA_13 PF13166.6 gi|218883423|ref|YP_002427805.1| - 0.13 10.9 0.0 8.8 4.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.10 gi|218883423|ref|YP_002427805.1| - 0.18 11.3 2.5 37 3.7 0.0 3.4 4 0 0 4 4 3 0 Signal recognition particle receptor beta subunit MeaB PF03308.16 gi|218883423|ref|YP_002427805.1| - 0.19 10.7 0.1 0.37 9.7 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|218883423|ref|YP_002427805.1| - 0.21 11.7 2.8 0.25 11.4 0.2 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase PGM_PMM_I PF02878.16 gi|218883424|ref|YP_002427806.1| - 5.4e-12 45.6 0.0 2e-11 43.8 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|218883424|ref|YP_002427806.1| - 6.4e-05 23.5 0.0 0.00015 22.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NTP_transferase PF00483.23 gi|218883425|ref|YP_002427807.1| - 1.2e-37 129.8 0.0 1.9e-37 129.2 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|218883425|ref|YP_002427807.1| - 5.6e-12 46.3 0.0 7.7e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|218883425|ref|YP_002427807.1| - 2.5e-08 33.3 8.3 6.4e-05 22.5 0.6 3.9 1 1 2 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|218883425|ref|YP_002427807.1| - 0.0019 17.9 0.4 0.0049 16.6 0.4 1.8 1 0 0 1 1 1 1 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|218883425|ref|YP_002427807.1| - 0.01 14.0 0.1 0.018 13.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Bactofilin PF04519.13 gi|218883425|ref|YP_002427807.1| - 0.051 13.9 0.6 0.21 11.9 0.2 2.1 1 1 1 2 2 2 0 Polymer-forming cytoskeletal CTP_transf_3 PF02348.19 gi|218883425|ref|YP_002427807.1| - 0.078 12.9 0.1 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 Cytidylyltransferase Fucokinase PF07959.12 gi|218883425|ref|YP_002427807.1| - 0.1 11.5 0.1 0.78 8.6 0.1 1.9 2 0 0 2 2 2 0 L-fucokinase IspD PF01128.19 gi|218883425|ref|YP_002427807.1| - 0.15 11.7 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PLDc_2 PF13091.6 gi|218883426|ref|YP_002427808.1| - 9.6e-23 80.5 0.1 1.2e-22 80.2 0.1 1.1 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.22 gi|218883426|ref|YP_002427808.1| - 5.6e-05 23.2 0.9 0.0003 20.8 0.1 2.5 2 0 0 2 2 2 1 Phospholipase D Active site motif CitMHS PF03600.16 gi|218883427|ref|YP_002427809.1| - 1.6e-22 80.1 39.4 1.6e-22 80.1 39.4 2.0 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.15 gi|218883427|ref|YP_002427809.1| - 6.9e-05 22.4 38.2 0.00014 21.3 38.2 1.5 1 1 0 1 1 1 1 Arsenical pump membrane protein Na_sulph_symp PF00939.19 gi|218883427|ref|YP_002427809.1| - 0.0017 17.5 19.3 0.0017 17.5 19.3 2.5 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region Phage_holin_2_2 PF10746.9 gi|218883427|ref|YP_002427809.1| - 0.11 12.2 2.3 0.14 11.8 0.4 2.3 2 0 0 2 2 2 0 Phage holin T7 family, holin superfamily II OrfB_Zn_ribbon PF07282.11 gi|218883428|ref|YP_002427810.1| - 8.2e-18 64.1 0.0 1.9e-17 62.9 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF3496 PF12001.8 gi|218883428|ref|YP_002427810.1| - 0.69 10.3 3.1 1.7 9.1 3.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3496) Resolvase PF00239.21 gi|218883429|ref|YP_002427811.1| - 5.8e-22 78.4 0.7 9.4e-22 77.7 0.5 1.4 1 1 1 2 2 2 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|218883429|ref|YP_002427811.1| - 1.5e-07 31.4 0.0 3.3e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|218883429|ref|YP_002427811.1| - 0.02 14.7 0.5 0.076 12.8 0.0 2.3 3 0 0 3 3 3 0 MerR family regulatory protein NTPase_I-T PF01931.18 gi|218883430|ref|YP_002427812.1| - 2.2e-46 157.6 0.0 2.5e-46 157.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 OTCace PF00185.24 gi|218883431|ref|YP_002427813.1| - 1.9e-37 128.8 0.0 8.4e-37 126.7 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|218883431|ref|YP_002427813.1| - 5.4e-34 117.4 0.0 8.3e-34 116.7 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OpuAC PF04069.12 gi|218883431|ref|YP_002427813.1| - 0.03 13.9 0.3 0.067 12.8 0.3 1.6 2 1 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system Band_7 PF01145.25 gi|218883432|ref|YP_002427814.1| - 0.013 15.5 0.1 0.013 15.5 0.1 1.0 1 0 0 1 1 1 0 SPFH domain / Band 7 family RPAP1_N PF08621.10 gi|218883432|ref|YP_002427814.1| - 0.046 13.5 2.8 0.51 10.2 0.8 2.2 2 0 0 2 2 2 0 RPAP1-like, N-terminal HHH_5 PF14520.6 gi|218883432|ref|YP_002427814.1| - 0.077 13.6 0.1 0.15 12.7 0.1 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF2605 PF10792.9 gi|218883432|ref|YP_002427814.1| - 0.088 12.7 0.4 0.1 12.6 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2605) RbsD_FucU PF05025.13 gi|218883432|ref|YP_002427814.1| - 0.092 13.2 0.2 0.23 11.9 0.2 1.6 1 1 0 1 1 1 0 RbsD / FucU transport protein family PGM_PMM_I PF02878.16 gi|218883433|ref|YP_002427815.1| - 1.5e-24 86.3 0.0 2.6e-24 85.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|218883433|ref|YP_002427815.1| - 1.1e-17 64.5 0.0 2.3e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|218883433|ref|YP_002427815.1| - 1.2e-12 47.8 0.2 2.9e-12 46.6 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|218883433|ref|YP_002427815.1| - 7.5e-06 26.1 0.0 1.5e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AAA_16 PF13191.6 gi|218883435|ref|YP_002427817.1| - 0.013 15.9 0.0 0.13 12.6 0.0 2.5 2 1 0 2 2 2 0 AAA ATPase domain Fe-S_assembly PF04384.13 gi|218883435|ref|YP_002427817.1| - 0.064 13.9 0.0 0.15 12.7 0.0 1.6 1 0 0 1 1 1 0 Iron-sulphur cluster assembly MMR_HSR1 PF01926.23 gi|218883435|ref|YP_002427817.1| - 0.12 12.5 0.1 0.5 10.5 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase ThiC_Rad_SAM PF01964.18 gi|218883436|ref|YP_002427818.1| - 1.1e-165 551.5 0.0 1.3e-165 551.3 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family PRORP PF16953.5 gi|218883436|ref|YP_002427818.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein-only RNase P LD_cluster3 PF18180.1 gi|218883436|ref|YP_002427818.1| - 0.13 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 SLOG cluster3 family Aminotran_3 PF00202.21 gi|218883438|ref|YP_002427820.1| - 1.5e-110 369.7 0.0 1.8e-110 369.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Radical_SAM_C PF16199.5 gi|218883439|ref|YP_002427821.1| - 1.4e-26 92.3 0.4 3.2e-26 91.2 0.4 1.6 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|218883439|ref|YP_002427821.1| - 1.9e-26 93.4 0.0 5.3e-26 92.0 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|218883439|ref|YP_002427821.1| - 1e-06 29.0 0.6 4.2e-06 27.0 0.6 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|218883439|ref|YP_002427821.1| - 0.0014 18.5 0.0 0.0036 17.2 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF763 PF05559.11 gi|218883440|ref|YP_002427822.1| - 6.9e-109 363.8 0.0 8.1e-109 363.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) DnaB_2 PF07261.11 gi|218883440|ref|YP_002427822.1| - 0.091 12.5 0.1 0.43 10.3 0.0 2.1 2 0 0 2 2 2 0 Replication initiation and membrane attachment Fe-ADH PF00465.19 gi|218883441|ref|YP_002427823.1| - 1.7e-88 296.9 0.1 2.3e-88 296.5 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|218883441|ref|YP_002427823.1| - 1.2e-14 54.6 2.4 1.5e-10 41.3 0.2 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|218883441|ref|YP_002427823.1| - 0.0053 15.9 0.6 0.013 14.7 0.1 1.8 2 0 0 2 2 2 1 3-dehydroquinate synthase DUF4521 PF15021.6 gi|218883441|ref|YP_002427823.1| - 0.18 11.7 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4521) Glyco_trans_2_3 PF13632.6 gi|218883442|ref|YP_002427824.1| - 2.2e-22 79.9 0.1 3.7e-22 79.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|218883442|ref|YP_002427824.1| - 1.2e-10 41.7 0.0 1.6e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|218883442|ref|YP_002427824.1| - 0.0094 15.4 0.0 0.038 13.5 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferase family 21 MMM1 PF10296.9 gi|218883443|ref|YP_002427825.1| - 0.018 14.1 0.0 0.025 13.6 0.0 1.1 1 0 0 1 1 1 0 Maintenance of mitochondrial morphology protein 1 DUF2226 PF09987.9 gi|218883443|ref|YP_002427825.1| - 0.18 11.1 4.1 0.079 12.3 0.8 2.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2226) SH3_3 PF08239.11 gi|218883444|ref|YP_002427826.1| - 0.01 16.1 1.2 0.019 15.2 1.2 1.4 1 0 0 1 1 1 0 Bacterial SH3 domain GHMP_kinases_N PF00288.26 gi|218883445|ref|YP_002427827.1| - 2.9e-17 62.6 0.2 6.2e-17 61.6 0.2 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|218883445|ref|YP_002427827.1| - 8.6e-07 29.2 0.5 4e-06 27.1 0.3 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal CopD PF05425.13 gi|218883445|ref|YP_002427827.1| - 0.078 13.4 0.3 0.16 12.4 0.3 1.6 1 0 0 1 1 1 0 Copper resistance protein D ParA PF10609.9 gi|218883446|ref|YP_002427828.1| - 2.4e-82 276.1 0.1 2.8e-82 275.9 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|218883446|ref|YP_002427828.1| - 3e-13 50.0 0.0 7e-13 48.7 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|218883446|ref|YP_002427828.1| - 2.7e-07 30.1 1.8 6.6e-07 28.8 0.7 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|218883446|ref|YP_002427828.1| - 3.9e-07 30.2 0.8 9.2e-06 25.7 0.1 2.3 1 1 0 2 2 2 1 AAA domain Fer4_NifH PF00142.18 gi|218883446|ref|YP_002427828.1| - 2.5e-05 23.9 0.3 0.0022 17.5 0.1 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|218883446|ref|YP_002427828.1| - 0.0017 17.7 0.3 0.0027 17.0 0.3 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.6 gi|218883446|ref|YP_002427828.1| - 0.0066 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|218883446|ref|YP_002427828.1| - 0.016 14.5 0.0 0.024 13.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_26 PF13500.6 gi|218883446|ref|YP_002427828.1| - 0.039 13.8 1.7 6.2 6.6 0.0 2.8 2 1 1 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|218883446|ref|YP_002427828.1| - 0.044 13.0 0.2 0.068 12.4 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain MeaB PF03308.16 gi|218883446|ref|YP_002427828.1| - 0.066 12.2 0.1 0.12 11.3 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PhoH PF02562.16 gi|218883446|ref|YP_002427828.1| - 0.085 12.3 0.2 0.22 10.9 0.1 1.6 2 0 0 2 2 2 0 PhoH-like protein IstB_IS21 PF01695.17 gi|218883446|ref|YP_002427828.1| - 0.18 11.5 0.1 0.49 10.1 0.1 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein TsaE PF02367.17 gi|218883446|ref|YP_002427828.1| - 0.21 11.6 0.1 0.38 10.8 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|218883446|ref|YP_002427828.1| - 0.22 11.9 0.0 0.44 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain DUF432 PF04254.13 gi|218883448|ref|YP_002427830.1| - 0.0081 16.3 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF432) Snf7 PF03357.21 gi|218883449|ref|YP_002427831.1| - 0.0029 17.2 2.3 0.0043 16.7 2.2 1.4 1 1 0 1 1 1 1 Snf7 RPW8 PF05659.11 gi|218883449|ref|YP_002427831.1| - 0.0069 16.1 3.7 0.26 11.0 1.1 3.0 2 1 0 2 2 2 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 Ubie_methyltran PF01209.18 gi|218883449|ref|YP_002427831.1| - 0.01 15.2 0.1 0.012 15.0 0.1 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family DUF885 PF05960.11 gi|218883449|ref|YP_002427831.1| - 0.074 12.7 0.8 0.089 12.4 0.8 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) LOH1CR12 PF10158.9 gi|218883449|ref|YP_002427831.1| - 0.083 12.9 0.5 0.21 11.6 0.3 1.9 1 1 0 1 1 1 0 Tumour suppressor protein Syntaxin_2 PF14523.6 gi|218883449|ref|YP_002427831.1| - 0.22 11.9 2.8 1.3 9.5 0.9 2.7 1 1 1 2 2 2 0 Syntaxin-like protein STT3 PF02516.14 gi|218883450|ref|YP_002427832.1| - 3e-19 69.3 39.3 1.2e-18 67.3 39.3 2.2 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit UPF0093 PF03653.13 gi|218883450|ref|YP_002427832.1| - 0.17 12.1 2.6 2.4 8.4 0.4 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0093) OTCace PF00185.24 gi|218883451|ref|YP_002427833.1| - 2.7e-57 193.2 0.0 4.3e-57 192.6 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|218883451|ref|YP_002427833.1| - 3.1e-50 170.0 0.2 1.7e-49 167.6 0.1 1.9 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DUF711 PF05167.12 gi|218883452|ref|YP_002427834.1| - 9.7e-27 93.9 0.0 5.2e-25 88.2 0.0 2.3 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) UPF0147 PF03685.13 gi|218883453|ref|YP_002427835.1| - 1.3e-33 114.9 0.4 1.5e-33 114.7 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HEAT_PBS PF03130.16 gi|218883453|ref|YP_002427835.1| - 0.082 13.6 0.2 0.32 11.8 0.2 2.1 2 1 0 2 2 2 0 PBS lyase HEAT-like repeat UPF0253 PF06786.12 gi|218883453|ref|YP_002427835.1| - 0.1 12.9 0.3 7.4 6.9 0.1 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.12 gi|218883454|ref|YP_002427836.1| - 3.1e-12 46.4 0.4 4.3e-12 46.0 0.4 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Thymidylate_kin PF02223.17 gi|218883455|ref|YP_002427837.1| - 1.2e-41 142.5 0.0 1.3e-41 142.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|218883455|ref|YP_002427837.1| - 5.7e-06 26.3 0.1 2.8e-05 24.1 0.1 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_28 PF13521.6 gi|218883455|ref|YP_002427837.1| - 6.3e-05 23.3 0.0 7.4e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|218883455|ref|YP_002427837.1| - 9.8e-05 22.9 0.0 0.00021 21.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|218883455|ref|YP_002427837.1| - 0.00047 20.6 0.0 0.0034 17.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|218883455|ref|YP_002427837.1| - 0.00062 20.0 0.0 0.001 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|218883455|ref|YP_002427837.1| - 0.00081 19.3 0.0 0.0018 18.1 0.0 1.6 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|218883455|ref|YP_002427837.1| - 0.0015 18.7 0.0 0.0023 18.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain PPK2 PF03976.14 gi|218883455|ref|YP_002427837.1| - 0.002 17.7 0.0 0.0049 16.4 0.0 1.7 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) Arf PF00025.21 gi|218883455|ref|YP_002427837.1| - 0.0073 15.8 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 ADP-ribosylation factor family NACHT PF05729.12 gi|218883455|ref|YP_002427837.1| - 0.016 15.1 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|218883455|ref|YP_002427837.1| - 0.017 15.5 0.0 0.032 14.6 0.0 1.5 1 1 1 2 2 2 0 AAA ATPase domain TsaE PF02367.17 gi|218883455|ref|YP_002427837.1| - 0.026 14.5 0.0 0.056 13.5 0.0 1.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRK PF00485.18 gi|218883455|ref|YP_002427837.1| - 0.027 14.2 0.0 0.082 12.6 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family KTI12 PF08433.10 gi|218883455|ref|YP_002427837.1| - 0.073 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 SKI PF01202.22 gi|218883455|ref|YP_002427837.1| - 0.085 13.0 0.0 5.3 7.1 0.0 2.4 2 1 0 2 2 2 0 Shikimate kinase MobB PF03205.14 gi|218883455|ref|YP_002427837.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|218883455|ref|YP_002427837.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 NTPase DUF126 PF01989.16 gi|218883456|ref|YP_002427838.1| - 1.2e-26 92.2 0.1 2.4e-26 91.3 0.1 1.5 1 0 0 1 1 1 1 Aconitase X swivel domain DUF521 PF04412.13 gi|218883457|ref|YP_002427839.1| - 4.8e-122 407.5 0.0 5.4e-122 407.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.16 gi|218883458|ref|YP_002427840.1| - 5.2e-68 229.8 0.0 6.3e-68 229.5 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CLP1_P PF16575.5 gi|218883459|ref|YP_002427841.1| - 1.3e-34 119.6 0.0 1.8e-34 119.2 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|218883459|ref|YP_002427841.1| - 0.0079 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|218883461|ref|YP_002427843.1| - 7.2e-06 25.5 0.1 0.019 14.3 0.0 2.1 1 1 1 2 2 2 2 KaiC AAA_24 PF13479.6 gi|218883461|ref|YP_002427843.1| - 0.00039 20.2 0.0 0.0055 16.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|218883461|ref|YP_002427843.1| - 0.00095 18.8 0.0 0.0099 15.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|218883461|ref|YP_002427843.1| - 0.0019 18.6 0.0 0.0033 17.8 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|218883461|ref|YP_002427843.1| - 0.022 14.5 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|218883461|ref|YP_002427843.1| - 0.029 14.8 0.0 0.046 14.1 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|218883461|ref|YP_002427843.1| - 0.072 12.6 0.2 0.14 11.6 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region Kinesin PF00225.23 gi|218883461|ref|YP_002427843.1| - 0.083 11.8 0.3 0.14 11.1 0.3 1.2 1 1 0 1 1 1 0 Kinesin motor domain Viral_helicase1 PF01443.18 gi|218883461|ref|YP_002427843.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Rad51 PF08423.11 gi|218883461|ref|YP_002427843.1| - 0.13 11.5 0.4 0.77 9.0 0.4 2.3 1 1 0 1 1 1 0 Rad51 CarS-like PF01864.17 gi|218883462|ref|YP_002427844.1| - 2.9e-31 108.8 4.8 1e-30 107.0 4.8 1.7 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|218883462|ref|YP_002427844.1| - 2.9e-07 30.5 0.9 2.9e-07 30.5 0.9 2.1 1 1 1 2 2 2 1 Cytidylyltransferase family UPF0051 PF01458.17 gi|218883463|ref|YP_002427845.1| - 1.9e-44 152.0 0.1 2.3e-44 151.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|218883464|ref|YP_002427846.1| - 6.8e-21 75.2 0.0 9.1e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883464|ref|YP_002427846.1| - 1.9e-09 37.8 1.3 0.00064 19.6 0.4 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218883464|ref|YP_002427846.1| - 5e-08 32.6 0.1 0.0057 16.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|218883464|ref|YP_002427846.1| - 0.00011 21.9 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|218883464|ref|YP_002427846.1| - 0.00015 21.5 0.1 0.00031 20.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|218883464|ref|YP_002427846.1| - 0.00043 19.9 0.1 0.0025 17.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|218883464|ref|YP_002427846.1| - 0.0012 19.4 0.1 0.0018 18.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|218883464|ref|YP_002427846.1| - 0.011 15.6 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Adeno_IVa2 PF02456.15 gi|218883464|ref|YP_002427846.1| - 0.019 13.8 0.0 0.027 13.3 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein ABC_ATPase PF09818.9 gi|218883464|ref|YP_002427846.1| - 0.027 13.3 0.1 0.039 12.8 0.1 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|218883464|ref|YP_002427846.1| - 0.027 14.2 0.1 0.065 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|218883464|ref|YP_002427846.1| - 0.032 14.1 0.1 0.065 13.1 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|218883464|ref|YP_002427846.1| - 0.034 14.4 0.3 0.23 11.7 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|218883464|ref|YP_002427846.1| - 0.039 14.1 0.0 0.06 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|218883464|ref|YP_002427846.1| - 0.06 13.7 0.0 0.09 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain MutS_V PF00488.21 gi|218883464|ref|YP_002427846.1| - 0.066 13.2 0.5 5.5 7.0 0.1 2.1 2 0 0 2 2 2 0 MutS domain V SRP54 PF00448.22 gi|218883464|ref|YP_002427846.1| - 0.13 11.9 0.0 3.7 7.1 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|218883464|ref|YP_002427846.1| - 0.15 11.7 0.0 0.46 10.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|218883464|ref|YP_002427846.1| - 0.2 11.0 0.5 0.6 9.4 0.1 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family DEAD_assoc PF08494.11 gi|218883465|ref|YP_002427847.1| - 1.4e-50 171.8 0.0 2.7e-50 170.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|218883465|ref|YP_002427847.1| - 1.9e-29 102.6 0.0 2.1e-28 99.3 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|218883465|ref|YP_002427847.1| - 1.6e-15 57.4 0.8 4.5e-15 55.9 0.5 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|218883465|ref|YP_002427847.1| - 9.4e-12 45.3 0.0 5.2e-10 39.6 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|218883465|ref|YP_002427847.1| - 0.0066 16.9 3.3 1.3 9.5 0.7 3.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SNF2_N PF00176.23 gi|218883465|ref|YP_002427847.1| - 0.061 12.0 0.0 0.13 10.9 0.0 1.6 1 1 0 1 1 1 0 SNF2 family N-terminal domain Glyco_tranf_2_3 PF13641.6 gi|218883466|ref|YP_002427848.1| - 1.9e-15 57.4 0.0 3.2e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|218883466|ref|YP_002427848.1| - 1.9e-14 54.0 10.3 1.9e-14 54.0 10.3 2.4 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|218883466|ref|YP_002427848.1| - 5.5e-11 42.6 0.0 8.5e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|218883466|ref|YP_002427848.1| - 0.0014 18.1 0.0 0.0036 16.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Lactamase_B_3 PF13483.6 gi|218883467|ref|YP_002427849.1| - 1.5e-38 132.3 0.6 1.9e-38 131.9 0.3 1.3 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|218883467|ref|YP_002427849.1| - 7.2e-15 55.0 1.9 1.2e-10 41.3 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|218883467|ref|YP_002427849.1| - 0.14 12.2 5.2 3.7 7.5 4.4 2.3 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Thioredoxin_3 PF13192.6 gi|218883471|ref|YP_002427853.1| - 1.6e-06 28.1 0.0 2.7e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain FancD2 PF14631.6 gi|218883471|ref|YP_002427853.1| - 0.015 12.8 0.0 0.016 12.6 0.0 1.0 1 0 0 1 1 1 0 Fanconi anaemia protein FancD2 nuclease PYNP_C PF07831.13 gi|218883472|ref|YP_002427854.1| - 5.1e-13 48.5 0.0 1.3e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|218883472|ref|YP_002427854.1| - 5.5e-11 42.5 4.2 2.8e-10 40.2 1.5 2.7 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|218883472|ref|YP_002427854.1| - 6.7e-11 41.9 0.0 1.9e-10 40.4 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain CDC48_N PF02359.18 gi|218883472|ref|YP_002427854.1| - 7e-07 29.3 0.2 1.5e-06 28.3 0.2 1.5 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Molydop_binding PF01568.21 gi|218883472|ref|YP_002427854.1| - 0.00019 21.4 0.5 0.00085 19.3 0.1 2.1 2 1 0 2 2 2 1 Molydopterin dinucleotide binding domain TcpF PF06340.11 gi|218883472|ref|YP_002427854.1| - 0.017 14.0 0.0 0.033 13.1 0.0 1.4 1 0 0 1 1 1 0 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F AstA PF04958.12 gi|218883472|ref|YP_002427854.1| - 0.16 10.5 0.0 0.24 9.9 0.0 1.2 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit FAD_oxidored PF12831.7 gi|218883473|ref|YP_002427855.1| - 1.5e-10 41.0 0.2 2.4e-10 40.4 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|218883473|ref|YP_002427855.1| - 5e-10 39.0 0.1 1e-06 28.1 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|218883473|ref|YP_002427855.1| - 5.2e-10 39.0 2.7 3.3e-06 26.4 0.5 3.0 3 1 1 4 4 4 2 FAD binding domain FAD_binding_3 PF01494.19 gi|218883473|ref|YP_002427855.1| - 2.2e-08 33.7 1.5 1.1e-05 24.9 0.2 3.1 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|218883473|ref|YP_002427855.1| - 4.3e-08 33.1 2.2 0.0004 20.1 0.6 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|218883473|ref|YP_002427855.1| - 8.5e-07 28.5 0.1 2.5e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|218883473|ref|YP_002427855.1| - 4.9e-06 26.7 0.4 0.0046 17.1 0.2 2.9 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|218883473|ref|YP_002427855.1| - 9e-06 24.8 0.5 0.018 13.9 0.0 2.6 2 1 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.14 gi|218883473|ref|YP_002427855.1| - 2.3e-05 23.3 0.1 9.4e-05 21.3 0.0 2.0 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.22 gi|218883473|ref|YP_002427855.1| - 5.3e-05 22.5 0.4 7.9e-05 21.9 0.4 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|218883473|ref|YP_002427855.1| - 7.7e-05 22.0 0.1 0.00017 20.9 0.1 1.6 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|218883473|ref|YP_002427855.1| - 0.00071 20.1 0.8 0.15 12.7 0.2 3.0 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|218883473|ref|YP_002427855.1| - 0.085 12.1 0.1 0.2 10.9 0.1 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|218883473|ref|YP_002427855.1| - 0.12 12.2 0.2 0.12 12.2 0.2 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|218883473|ref|YP_002427855.1| - 0.25 10.9 0.9 0.41 10.2 0.2 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF429 PF04250.13 gi|218883474|ref|YP_002427856.1| - 3.2e-08 33.6 0.0 9.8e-07 28.8 0.0 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DHHA1 PF02272.19 gi|218883475|ref|YP_002427857.1| - 1.1e-07 32.3 0.1 2.5e-07 31.2 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|218883475|ref|YP_002427857.1| - 0.014 15.6 0.0 0.026 14.8 0.0 1.5 1 0 0 1 1 1 0 DHH family T2SSE PF00437.20 gi|218883477|ref|YP_002427859.1| - 4.2e-50 170.3 0.0 6.7e-50 169.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|218883477|ref|YP_002427859.1| - 0.00011 22.8 0.0 0.0003 21.3 0.0 1.8 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|218883477|ref|YP_002427859.1| - 0.0023 17.7 0.1 0.0059 16.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|218883477|ref|YP_002427859.1| - 0.0034 16.9 0.1 0.0065 16.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_28 PF13521.6 gi|218883477|ref|YP_002427859.1| - 0.012 15.8 0.6 0.049 13.9 0.1 2.2 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|218883477|ref|YP_002427859.1| - 0.013 14.7 0.1 0.022 13.9 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_16 PF13191.6 gi|218883477|ref|YP_002427859.1| - 0.019 15.4 0.0 0.035 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|218883477|ref|YP_002427859.1| - 0.03 14.8 0.1 0.03 14.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|218883477|ref|YP_002427859.1| - 0.033 13.9 0.2 0.064 13.0 0.2 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|218883477|ref|YP_002427859.1| - 0.037 13.9 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase FtsK_SpoIIIE PF01580.18 gi|218883477|ref|YP_002427859.1| - 0.042 13.2 0.0 0.096 12.0 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|218883477|ref|YP_002427859.1| - 0.064 12.2 0.6 0.2 10.6 0.6 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.29 gi|218883477|ref|YP_002427859.1| - 0.091 12.5 0.0 0.24 11.2 0.0 1.7 1 0 0 1 1 1 0 DEAD/DEAH box helicase CbiA PF01656.23 gi|218883477|ref|YP_002427859.1| - 0.11 12.6 0.1 0.65 10.1 0.0 2.4 3 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 gi|218883477|ref|YP_002427859.1| - 0.28 11.5 2.5 0.92 9.8 2.6 2.0 1 1 0 1 1 1 0 AAA domain T2SSF PF00482.23 gi|218883478|ref|YP_002427860.1| - 1.6e-15 57.1 7.9 1.4e-10 41.2 0.2 4.5 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F Pilin_N PF07790.11 gi|218883479|ref|YP_002427861.1| - 0.012 16.6 0.4 0.027 15.4 0.4 1.7 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal DUF3793 PF12672.7 gi|218883479|ref|YP_002427861.1| - 0.023 14.7 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3793) Proton_antipo_N PF00662.20 gi|218883479|ref|YP_002427861.1| - 0.12 12.5 2.1 0.36 10.9 2.1 1.8 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2341 PF10102.9 gi|218883481|ref|YP_002427863.1| - 1.4e-19 70.5 0.4 8.8e-19 67.9 0.2 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) CPBP PF02517.16 gi|218883483|ref|YP_002427865.1| - 0.044 14.2 0.3 0.056 13.8 0.3 1.3 1 1 0 1 1 1 0 CPBP intramembrane metalloprotease DUF1676 PF07898.13 gi|218883483|ref|YP_002427865.1| - 0.19 11.8 0.9 6.1 6.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1676) Phage_holin_5_2 PF16079.5 gi|218883485|ref|YP_002427867.1| - 2.7 8.4 10.9 0.29 11.5 2.1 2.3 1 1 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V OrfB_Zn_ribbon PF07282.11 gi|218883486|ref|YP_002427868.1| - 0.1 12.6 2.5 3.1 7.8 0.4 3.0 3 0 0 3 3 3 0 Putative transposase DNA-binding domain DUF3963 PF13124.6 gi|218883486|ref|YP_002427868.1| - 0.12 12.4 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3963) DNA_RNApol_7kD PF03604.13 gi|218883486|ref|YP_002427868.1| - 0.12 12.1 3.0 1.4 8.7 3.4 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|218883486|ref|YP_002427868.1| - 0.14 11.9 4.0 1.1 9.1 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain MIT PF04212.18 gi|218883487|ref|YP_002427869.1| - 0.0059 16.7 5.0 1.7 8.8 0.0 3.4 3 0 0 3 3 3 2 MIT (microtubule interacting and transport) domain TPR_12 PF13424.6 gi|218883487|ref|YP_002427869.1| - 0.0068 16.7 3.4 0.18 12.1 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat DUF1657 PF07870.11 gi|218883487|ref|YP_002427869.1| - 0.071 13.0 0.5 0.071 13.0 0.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) TPR_8 PF13181.6 gi|218883487|ref|YP_002427869.1| - 0.19 12.0 0.3 0.19 12.0 0.3 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|218883487|ref|YP_002427869.1| - 0.78 10.0 10.9 0.78 10.0 0.3 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat Band_7_1 PF13421.6 gi|218883488|ref|YP_002427870.1| - 1.5e-33 116.3 0.0 2.6e-33 115.6 0.0 1.3 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.25 gi|218883488|ref|YP_002427870.1| - 4.5e-15 56.1 0.0 7.4e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family SHOCT PF09851.9 gi|218883488|ref|YP_002427870.1| - 4.9e-08 32.5 5.3 1.1e-07 31.3 5.3 1.6 1 0 0 1 1 1 1 Short C-terminal domain DMAP_binding PF06464.11 gi|218883488|ref|YP_002427870.1| - 0.0024 18.7 2.4 0.0052 17.6 2.4 1.5 1 0 0 1 1 1 1 DMAP1-binding Domain GvpG PF05120.12 gi|218883488|ref|YP_002427870.1| - 0.0042 17.1 0.5 0.013 15.5 0.3 1.9 2 0 0 2 2 2 1 Gas vesicle protein G Takusan PF04822.13 gi|218883489|ref|YP_002427871.1| - 0.0012 18.7 2.5 0.04 13.8 0.2 2.7 2 1 0 2 2 2 1 Takusan DUF1241 PF06840.11 gi|218883489|ref|YP_002427871.1| - 0.066 12.9 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) GIIM PF08388.11 gi|218883489|ref|YP_002427871.1| - 0.076 13.1 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Group II intron, maturase-specific domain UPF0122 PF04297.14 gi|218883489|ref|YP_002427871.1| - 0.1 12.9 0.6 0.91 9.8 0.2 2.2 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like Hormone_recep PF00104.30 gi|218883489|ref|YP_002427871.1| - 0.1 12.1 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Ligand-binding domain of nuclear hormone receptor BIV_Env PF05858.12 gi|218883490|ref|YP_002427872.1| - 0.91 7.6 8.3 1 7.5 8.3 1.0 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) TrmB PF01978.19 gi|218883493|ref|YP_002427875.1| - 0.00011 22.0 0.1 0.00035 20.4 0.1 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|218883493|ref|YP_002427875.1| - 0.00026 20.6 0.1 0.00054 19.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|218883493|ref|YP_002427875.1| - 0.01 15.8 0.2 0.021 14.8 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|218883493|ref|YP_002427875.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|218883493|ref|YP_002427875.1| - 0.016 15.1 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|218883493|ref|YP_002427875.1| - 0.016 15.2 0.0 0.039 13.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_28 PF13518.6 gi|218883493|ref|YP_002427875.1| - 0.027 14.6 0.1 0.057 13.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|218883493|ref|YP_002427875.1| - 0.03 14.2 0.1 0.055 13.4 0.1 1.4 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.16 gi|218883493|ref|YP_002427875.1| - 0.036 14.4 0.7 0.067 13.5 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor HTH_23 PF13384.6 gi|218883493|ref|YP_002427875.1| - 0.048 13.5 0.6 0.12 12.2 0.2 1.9 2 0 0 2 2 2 0 Homeodomain-like domain CAMSAP_CC1 PF17095.5 gi|218883493|ref|YP_002427875.1| - 0.12 12.3 2.2 0.58 10.1 0.2 2.9 3 0 0 3 3 3 0 Spectrin-binding region of Ca2+-Calmodulin KIAA1430 PF13879.6 gi|218883493|ref|YP_002427875.1| - 8.4 7.2 7.3 9 7.1 2.3 2.3 2 0 0 2 2 2 0 KIAA1430 homologue AAA PF00004.29 gi|218883494|ref|YP_002427876.1| - 5.2e-33 114.3 0.0 8.8e-33 113.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.18 gi|218883494|ref|YP_002427876.1| - 8.6e-15 54.6 1.8 2.1e-14 53.4 1.8 1.7 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_lid_3 PF17862.1 gi|218883494|ref|YP_002427876.1| - 7.3e-08 32.1 0.0 1.5e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 AAA+ lid domain Vps4_C PF09336.10 gi|218883494|ref|YP_002427876.1| - 1.8e-06 27.9 0.1 5.3e-06 26.3 0.1 1.9 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain AAA_2 PF07724.14 gi|218883494|ref|YP_002427876.1| - 1.8e-05 24.9 0.0 5.7e-05 23.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|218883494|ref|YP_002427876.1| - 6.5e-05 22.7 0.0 0.00018 21.3 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|218883494|ref|YP_002427876.1| - 6.5e-05 23.2 0.0 0.0044 17.3 0.0 3.1 2 2 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|218883494|ref|YP_002427876.1| - 0.00016 21.5 0.0 0.0004 20.2 0.0 1.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.17 gi|218883494|ref|YP_002427876.1| - 0.00025 20.8 0.0 0.00044 20.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|218883494|ref|YP_002427876.1| - 0.00049 19.4 0.2 0.01 15.1 0.0 2.4 2 1 1 3 3 3 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|218883494|ref|YP_002427876.1| - 0.00069 20.0 0.0 0.45 10.9 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|218883494|ref|YP_002427876.1| - 0.00078 19.5 0.0 0.0035 17.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TPR_1 PF00515.28 gi|218883494|ref|YP_002427876.1| - 0.00089 19.0 2.6 0.0012 18.5 0.8 2.3 2 0 0 2 2 1 1 Tetratricopeptide repeat AAA_18 PF13238.6 gi|218883494|ref|YP_002427876.1| - 0.0011 19.5 0.1 0.0064 17.0 0.0 2.3 3 0 0 3 3 2 1 AAA domain ATPase_2 PF01637.18 gi|218883494|ref|YP_002427876.1| - 0.0014 18.6 0.2 2.1 8.2 0.0 2.8 1 1 1 2 2 2 2 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|218883494|ref|YP_002427876.1| - 0.0022 17.7 0.0 0.0056 16.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_7 PF12775.7 gi|218883494|ref|YP_002427876.1| - 0.0049 16.4 0.0 0.012 15.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region TPR_2 PF07719.17 gi|218883494|ref|YP_002427876.1| - 0.0087 16.1 1.8 0.026 14.6 0.2 2.7 2 1 1 3 3 3 1 Tetratricopeptide repeat RNA_helicase PF00910.22 gi|218883494|ref|YP_002427876.1| - 0.011 16.1 0.0 0.042 14.2 0.0 2.1 2 0 0 2 2 1 0 RNA helicase Rad17 PF03215.15 gi|218883494|ref|YP_002427876.1| - 0.011 15.6 0.0 0.029 14.3 0.0 1.7 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|218883494|ref|YP_002427876.1| - 0.012 15.8 0.0 0.033 14.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain TPR_8 PF13181.6 gi|218883494|ref|YP_002427876.1| - 0.019 15.2 3.5 0.049 13.9 0.7 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_25 PF13481.6 gi|218883494|ref|YP_002427876.1| - 0.019 14.5 0.1 0.11 12.0 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|218883494|ref|YP_002427876.1| - 0.019 15.0 0.0 0.047 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF5113 PF17140.4 gi|218883494|ref|YP_002427876.1| - 0.021 14.6 1.1 0.049 13.5 1.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5113) DUF815 PF05673.13 gi|218883494|ref|YP_002427876.1| - 0.025 13.7 0.0 0.046 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|218883494|ref|YP_002427876.1| - 0.027 14.7 0.0 0.05 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain TPR_6 PF13174.6 gi|218883494|ref|YP_002427876.1| - 0.036 14.7 3.4 2.5 8.9 0.1 3.9 3 1 1 4 4 3 0 Tetratricopeptide repeat ATP-synt_ab PF00006.25 gi|218883494|ref|YP_002427876.1| - 0.067 12.8 0.0 0.18 11.4 0.0 1.7 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TPR_11 PF13414.6 gi|218883494|ref|YP_002427876.1| - 0.097 12.4 0.7 0.27 11.0 0.7 1.8 1 0 0 1 1 1 0 TPR repeat Mg_chelatase PF01078.21 gi|218883494|ref|YP_002427876.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 gi|218883494|ref|YP_002427876.1| - 0.15 11.3 0.0 0.8 8.9 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin Hydin_ADK PF17213.3 gi|218883494|ref|YP_002427876.1| - 0.18 12.0 0.0 0.38 11.0 0.0 1.5 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain TPR_7 PF13176.6 gi|218883494|ref|YP_002427876.1| - 0.19 11.8 0.5 1.3 9.3 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat Cren7 PF11520.8 gi|218883495|ref|YP_002427877.1| - 1.6e-33 114.4 2.7 1.8e-33 114.3 2.7 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DHO_dh PF01180.21 gi|218883496|ref|YP_002427878.1| - 1.1e-33 116.7 0.0 1.3e-28 100.1 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Fer4_21 PF14697.6 gi|218883496|ref|YP_002427878.1| - 6.2e-12 45.5 9.0 1.5e-11 44.3 8.6 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|218883496|ref|YP_002427878.1| - 2.7e-11 43.9 11.4 6.1e-11 42.7 11.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|218883496|ref|YP_002427878.1| - 1.2e-10 40.8 19.4 4.6e-06 26.2 1.8 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|218883496|ref|YP_002427878.1| - 1.4e-08 34.8 9.9 2.8e-08 33.8 9.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|218883496|ref|YP_002427878.1| - 2.1e-08 33.8 12.8 0.00022 21.1 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|218883496|ref|YP_002427878.1| - 2.4e-07 30.8 11.0 4.5e-07 29.9 9.9 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218883496|ref|YP_002427878.1| - 7.8e-07 28.9 18.0 0.00027 20.9 4.2 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|218883496|ref|YP_002427878.1| - 1.9e-06 28.7 6.5 0.0052 17.7 2.1 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain NMO PF03060.15 gi|218883496|ref|YP_002427878.1| - 7.2e-06 25.6 0.6 1.3e-05 24.7 0.6 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_22 PF17179.4 gi|218883496|ref|YP_002427878.1| - 0.00034 21.4 7.0 0.2 12.5 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|218883496|ref|YP_002427878.1| - 0.00095 19.6 13.6 0.021 15.3 13.0 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain His_biosynth PF00977.21 gi|218883496|ref|YP_002427878.1| - 0.0015 18.0 0.0 0.0059 16.1 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein Fer4_17 PF13534.6 gi|218883496|ref|YP_002427878.1| - 0.0026 18.3 12.0 0.12 12.9 12.0 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain FMN_dh PF01070.18 gi|218883496|ref|YP_002427878.1| - 0.0033 16.5 3.3 0.024 13.7 3.2 2.4 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Fer4_4 PF12800.7 gi|218883496|ref|YP_002427878.1| - 0.022 15.2 19.2 0.13 12.8 3.2 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|218883496|ref|YP_002427878.1| - 0.039 14.9 20.9 0.055 14.4 4.6 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|218883496|ref|YP_002427878.1| - 0.043 14.4 10.0 1.4 9.6 1.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Glu_synthase PF01645.17 gi|218883496|ref|YP_002427878.1| - 0.083 12.0 0.1 0.13 11.4 0.1 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase Fer4_15 PF13459.6 gi|218883496|ref|YP_002427878.1| - 0.15 12.8 10.9 0.2 12.4 1.5 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain IMPDH PF00478.25 gi|218883496|ref|YP_002427878.1| - 0.19 10.7 0.2 0.4 9.6 0.2 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PGK PF00162.19 gi|218883497|ref|YP_002427879.1| - 1.7e-94 316.8 0.0 2e-94 316.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|218883498|ref|YP_002427880.1| - 1.3e-15 57.4 0.0 1.9e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|218883498|ref|YP_002427880.1| - 6.6e-06 26.3 0.0 1.8e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|218883498|ref|YP_002427880.1| - 0.00026 21.3 0.1 0.001 19.4 0.1 2.0 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Usp PF00582.26 gi|218883499|ref|YP_002427881.1| - 1.9e-19 70.6 0.4 2.6e-17 63.6 0.4 2.1 1 1 0 1 1 1 1 Universal stress protein family Glycos_transf_1 PF00534.20 gi|218883500|ref|YP_002427882.1| - 6.1e-13 48.7 0.0 1.1e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Phosphorylase PF00343.20 gi|218883500|ref|YP_002427882.1| - 2.3e-11 42.8 0.0 5.9e-10 38.1 0.0 2.3 2 1 0 2 2 2 1 Carbohydrate phosphorylase Glyco_trans_1_4 PF13692.6 gi|218883500|ref|YP_002427882.1| - 2.1e-07 31.4 0.0 4.2e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Pox_ATPase-GT PF10640.9 gi|218883500|ref|YP_002427882.1| - 0.071 12.0 0.1 0.12 11.2 0.1 1.3 1 0 0 1 1 1 0 mRNA capping enzyme N-terminal, ATPase and guanylyltransferase Peptidase_M28 PF04389.17 gi|218883501|ref|YP_002427883.1| - 1.7e-05 24.6 0.2 0.0029 17.3 0.0 2.5 2 1 0 2 2 2 2 Peptidase family M28 DUF4910 PF16254.5 gi|218883501|ref|YP_002427883.1| - 0.001 18.0 0.2 0.054 12.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4910) PsaF PF17550.2 gi|218883501|ref|YP_002427883.1| - 0.12 11.9 0.1 0.21 11.1 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function tRNA_synthFbeta PF17759.1 gi|218883502|ref|YP_002427884.1| - 1.6e-38 132.3 0.0 3.2e-38 131.3 0.0 1.5 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|218883502|ref|YP_002427884.1| - 2.5e-16 59.7 4.8 4.7e-11 42.8 0.2 3.6 4 0 0 4 4 4 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|218883502|ref|YP_002427884.1| - 3.3e-15 56.2 0.1 5.8e-15 55.4 0.1 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.20 gi|218883502|ref|YP_002427884.1| - 3.8e-05 23.3 0.0 0.00012 21.7 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) PhetRS_B1 PF18262.1 gi|218883502|ref|YP_002427884.1| - 0.0004 20.5 0.0 0.0073 16.5 0.0 2.5 1 1 0 1 1 1 1 Phe-tRNA synthetase beta subunit B1 domain DUF1500 PF07389.12 gi|218883502|ref|YP_002427884.1| - 0.032 14.3 0.2 0.12 12.5 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1500) Na_H_Exchanger PF00999.21 gi|218883503|ref|YP_002427885.1| - 6.2e-31 107.5 54.2 7.6e-31 107.3 54.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Ndc1_Nup PF09531.10 gi|218883504|ref|YP_002427886.1| - 0.025 13.3 0.1 0.029 13.1 0.1 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup HTH_3 PF01381.22 gi|218883505|ref|YP_002427887.1| - 8.5e-05 22.5 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix Cro PF09048.10 gi|218883505|ref|YP_002427887.1| - 0.002 18.1 0.0 0.0035 17.3 0.0 1.4 1 0 0 1 1 1 1 Cro Sigma70_r4_2 PF08281.12 gi|218883505|ref|YP_002427887.1| - 0.003 17.2 0.1 0.0078 15.9 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|218883505|ref|YP_002427887.1| - 0.019 14.8 0.0 0.051 13.4 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_31 PF13560.6 gi|218883505|ref|YP_002427887.1| - 0.024 15.0 0.0 0.042 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|218883505|ref|YP_002427887.1| - 0.034 14.1 0.0 0.075 13.0 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|218883505|ref|YP_002427887.1| - 0.12 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family YdaS_antitoxin PF15943.5 gi|218883505|ref|YP_002427887.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT S10_plectin PF03501.15 gi|218883505|ref|YP_002427887.1| - 0.2 11.8 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 Plectin/S10 domain DNA_binding_1 PF01035.20 gi|218883507|ref|YP_002427889.1| - 2.9e-19 69.0 0.0 3.4e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain CoA_transf_3 PF02515.17 gi|218883508|ref|YP_002427890.1| - 1.8e-117 392.6 0.0 2e-117 392.4 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III G_glu_transpept PF01019.21 gi|218883509|ref|YP_002427891.1| - 6.7e-81 272.6 0.0 7.6e-81 272.4 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase TOBE_2 PF08402.10 gi|218883509|ref|YP_002427891.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 TOBE domain Mob_synth_C PF06463.13 gi|218883509|ref|YP_002427891.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Molybdenum Cofactor Synthesis C GHMP_kinases_C PF08544.13 gi|218883510|ref|YP_002427892.1| - 1.6e-06 28.4 0.0 4.1e-06 27.1 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|218883510|ref|YP_002427892.1| - 0.021 15.1 0.4 0.046 14.0 0.0 1.8 2 0 0 2 2 2 0 GHMP kinases N terminal domain Cas_Csy4 PF09618.10 gi|218883510|ref|YP_002427892.1| - 0.15 12.2 0.0 14 5.8 0.0 2.1 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csy4) DUF3384 PF11864.8 gi|218883510|ref|YP_002427892.1| - 0.16 10.8 0.0 0.21 10.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3384) DUF447 PF04289.12 gi|218883511|ref|YP_002427893.1| - 3.3e-13 49.8 0.0 3.7e-13 49.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) DUF1464 PF07318.12 gi|218883512|ref|YP_002427894.1| - 1.2e-85 287.6 1.3 1.4e-85 287.4 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) BcrAD_BadFG PF01869.20 gi|218883512|ref|YP_002427894.1| - 0.043 13.3 0.0 0.094 12.2 0.0 1.4 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family MatE PF01554.18 gi|218883513|ref|YP_002427895.1| - 8.8e-42 142.5 41.1 7e-24 84.3 9.2 2.8 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|218883513|ref|YP_002427895.1| - 1.1e-09 38.6 10.4 1.1e-09 38.6 10.4 5.4 3 1 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain HAD_2 PF13419.6 gi|218883514|ref|YP_002427896.1| - 9.6e-14 51.9 0.0 1.8e-13 51.0 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|218883514|ref|YP_002427896.1| - 2.1e-08 34.7 0.0 5.3e-08 33.4 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|218883514|ref|YP_002427896.1| - 0.00012 22.1 0.0 0.0002 21.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like DUF3895 PF13034.6 gi|218883514|ref|YP_002427896.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3895) MoCF_biosynth PF00994.24 gi|218883515|ref|YP_002427897.1| - 5.4e-26 91.0 0.1 6.4e-26 90.7 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain TMEM154 PF15102.6 gi|218883516|ref|YP_002427898.1| - 0.0076 16.2 4.7 0.013 15.4 4.7 1.4 1 0 0 1 1 1 1 TMEM154 protein family RIFIN PF02009.16 gi|218883516|ref|YP_002427898.1| - 0.016 15.1 0.5 0.02 14.8 0.5 1.1 1 0 0 1 1 1 0 Rifin TPP_enzyme_C PF02775.21 gi|218883516|ref|YP_002427898.1| - 0.11 12.2 0.5 4 7.2 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DUF5305 PF17231.2 gi|218883516|ref|YP_002427898.1| - 0.12 11.7 4.8 0.2 11.0 4.8 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5305) Stevor PF17410.2 gi|218883516|ref|YP_002427898.1| - 0.95 8.9 3.2 1.6 8.2 3.2 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame SAP130_C PF16014.5 gi|218883516|ref|YP_002427898.1| - 1.3 8.0 4.2 1.7 7.7 4.2 1.1 1 0 0 1 1 1 0 Histone deacetylase complex subunit SAP130 C-terminus ATPase PF06745.13 gi|218883517|ref|YP_002427899.1| - 1.7e-21 76.7 0.0 2.2e-21 76.3 0.0 1.0 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|218883517|ref|YP_002427899.1| - 2.9e-07 30.1 0.0 4.2e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|218883517|ref|YP_002427899.1| - 5.2e-06 26.2 0.0 8.3e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|218883517|ref|YP_002427899.1| - 2.8e-05 24.4 0.0 5.1e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain Elong_Iki1 PF10483.9 gi|218883517|ref|YP_002427899.1| - 5e-05 22.9 0.0 7.3e-05 22.4 0.0 1.3 1 1 0 1 1 1 1 Elongator subunit Iki1 CbiA PF01656.23 gi|218883517|ref|YP_002427899.1| - 0.00015 21.8 0.0 0.00021 21.4 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_14 PF13173.6 gi|218883517|ref|YP_002427899.1| - 0.00018 21.5 0.0 0.0007 19.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|218883517|ref|YP_002427899.1| - 0.00022 21.0 0.0 0.00047 19.9 0.0 1.5 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.12 gi|218883517|ref|YP_002427899.1| - 0.0003 20.8 0.7 0.041 13.8 0.7 2.8 1 1 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 gi|218883517|ref|YP_002427899.1| - 0.00033 21.1 0.0 0.00074 19.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|218883517|ref|YP_002427899.1| - 0.00089 18.9 0.0 0.0026 17.4 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|218883517|ref|YP_002427899.1| - 0.0068 15.6 0.0 0.0085 15.3 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain PAXNEB PF05625.11 gi|218883517|ref|YP_002427899.1| - 0.014 14.6 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 0 PAXNEB protein DUF835 PF05763.12 gi|218883517|ref|YP_002427899.1| - 0.015 15.0 1.8 0.19 11.5 0.1 3.1 2 2 2 4 4 4 0 Protein of unknown function (DUF835) PglD_N PF17836.1 gi|218883517|ref|YP_002427899.1| - 0.024 15.3 0.1 0.052 14.2 0.1 1.6 1 0 0 1 1 1 0 PglD N-terminal domain Zeta_toxin PF06414.12 gi|218883517|ref|YP_002427899.1| - 0.025 13.9 0.0 0.049 12.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ATPase_2 PF01637.18 gi|218883517|ref|YP_002427899.1| - 0.039 13.9 0.2 0.17 11.8 0.1 2.0 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|218883517|ref|YP_002427899.1| - 0.045 13.0 0.0 0.063 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 gi|218883517|ref|YP_002427899.1| - 0.046 14.2 0.0 0.076 13.5 0.0 1.3 1 0 0 1 1 1 0 ABC transporter T2SSE PF00437.20 gi|218883517|ref|YP_002427899.1| - 0.068 12.2 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|218883517|ref|YP_002427899.1| - 0.09 12.7 0.2 3.5 7.5 0.0 2.6 2 1 0 2 2 2 0 NTPase Sigma54_activat PF00158.26 gi|218883517|ref|YP_002427899.1| - 0.09 12.5 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_5 PF07728.14 gi|218883517|ref|YP_002427899.1| - 0.093 12.7 0.0 0.23 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) KAP_NTPase PF07693.14 gi|218883517|ref|YP_002427899.1| - 0.095 11.9 0.0 0.25 10.5 0.0 1.5 1 1 0 1 1 1 0 KAP family P-loop domain ArsA_ATPase PF02374.15 gi|218883517|ref|YP_002427899.1| - 0.12 11.6 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_7 PF12775.7 gi|218883517|ref|YP_002427899.1| - 0.12 11.9 0.0 0.3 10.6 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region Pyr_redox_2 PF07992.14 gi|218883518|ref|YP_002427900.1| - 1.9e-33 115.9 4.9 2.5e-33 115.6 4.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|218883518|ref|YP_002427900.1| - 2.5e-20 72.3 0.0 4.8e-20 71.4 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_3 PF13738.6 gi|218883518|ref|YP_002427900.1| - 6.3e-13 48.6 0.2 9.3e-07 28.4 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|218883518|ref|YP_002427900.1| - 2e-10 40.4 4.2 3.6e-07 29.7 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|218883518|ref|YP_002427900.1| - 8.3e-09 35.6 3.9 0.0002 21.5 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|218883518|ref|YP_002427900.1| - 4.7e-08 32.8 4.2 8.1e-08 32.0 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|218883518|ref|YP_002427900.1| - 6.7e-08 32.1 2.1 6.8e-06 25.5 0.1 2.3 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|218883518|ref|YP_002427900.1| - 9.6e-08 32.0 8.1 0.00094 18.9 0.1 3.3 2 1 1 3 3 3 3 FAD dependent oxidoreductase GIDA PF01134.22 gi|218883518|ref|YP_002427900.1| - 1e-07 31.4 6.9 1.7e-05 24.1 0.0 3.5 4 0 0 4 4 4 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|218883518|ref|YP_002427900.1| - 1.2e-07 31.1 11.1 4.2e-07 29.4 1.2 3.3 2 2 1 3 3 3 1 FAD binding domain Pyr_redox PF00070.27 gi|218883518|ref|YP_002427900.1| - 1.4e-06 28.7 11.0 0.00035 21.1 2.2 3.0 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|218883518|ref|YP_002427900.1| - 5.7e-06 25.3 4.4 0.00014 20.7 0.2 2.7 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_7 PF13241.6 gi|218883518|ref|YP_002427900.1| - 1.1e-05 25.8 1.8 0.15 12.5 0.2 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding ApbA PF02558.16 gi|218883518|ref|YP_002427900.1| - 0.00095 18.8 6.1 0.047 13.3 1.3 2.5 2 1 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|218883518|ref|YP_002427900.1| - 0.0036 16.4 0.6 0.0036 16.4 0.6 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Shikimate_DH PF01488.20 gi|218883518|ref|YP_002427900.1| - 0.0037 17.3 1.2 0.39 10.8 0.1 2.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Amino_oxidase PF01593.24 gi|218883518|ref|YP_002427900.1| - 0.007 15.7 0.7 2.9 7.1 0.1 2.7 2 1 1 3 3 3 2 Flavin containing amine oxidoreductase Glu_dehyd_C PF16912.5 gi|218883518|ref|YP_002427900.1| - 0.0088 15.6 0.4 4 6.9 0.0 2.7 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus ThiF PF00899.21 gi|218883518|ref|YP_002427900.1| - 0.029 13.7 2.8 1.4 8.2 0.0 2.4 2 0 0 2 2 2 0 ThiF family ELFV_dehydrog PF00208.21 gi|218883518|ref|YP_002427900.1| - 0.11 12.1 1.4 4.7 6.8 0.1 2.2 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|218883518|ref|YP_002427900.1| - 0.24 10.9 3.8 6.6 6.3 0.1 2.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|218883518|ref|YP_002427900.1| - 0.47 11.1 3.2 3.5 8.3 1.0 3.1 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|218883518|ref|YP_002427900.1| - 2.2 7.5 6.2 0.33 10.2 0.1 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|218883518|ref|YP_002427900.1| - 2.6 8.0 5.9 6 6.8 0.1 3.4 4 0 0 4 4 4 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|218883518|ref|YP_002427900.1| - 5.9 6.7 9.1 5.6 6.8 0.3 2.8 3 0 0 3 3 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4 PF00037.27 gi|218883519|ref|YP_002427901.1| - 2.5e-11 42.9 15.2 2e-07 30.6 3.6 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|218883519|ref|YP_002427901.1| - 3.6e-08 33.9 5.9 7.1e-08 32.9 5.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|218883519|ref|YP_002427901.1| - 1.3e-07 31.6 7.9 2.2e-07 30.9 7.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218883519|ref|YP_002427901.1| - 3.4e-06 26.9 14.8 0.0018 18.2 3.1 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|218883519|ref|YP_002427901.1| - 9.1e-06 25.7 11.5 2e-05 24.6 11.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|218883519|ref|YP_002427901.1| - 1.4e-05 24.8 15.0 0.00026 20.9 4.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|218883519|ref|YP_002427901.1| - 2.3e-05 24.4 20.1 0.00045 20.3 11.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|218883519|ref|YP_002427901.1| - 2.9e-05 24.2 9.9 0.0003 21.1 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|218883519|ref|YP_002427901.1| - 3.5e-05 24.2 1.1 0.0055 17.1 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|218883519|ref|YP_002427901.1| - 0.00016 22.5 10.0 0.01 16.7 0.5 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|218883519|ref|YP_002427901.1| - 0.005 17.5 0.3 0.005 17.5 0.3 2.7 2 2 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|218883519|ref|YP_002427901.1| - 0.044 14.3 10.6 0.094 13.3 2.0 2.4 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|218883519|ref|YP_002427901.1| - 0.05 14.2 0.2 0.05 14.2 0.2 2.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|218883519|ref|YP_002427901.1| - 0.088 13.8 14.4 0.55 11.3 0.7 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain SO_alpha_A3 PF17806.1 gi|218883520|ref|YP_002427902.1| - 4.3e-14 52.6 0.0 5.3e-14 52.3 0.0 1.0 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Fer2_BFD PF04324.15 gi|218883520|ref|YP_002427902.1| - 3.4e-12 46.5 1.0 4.4e-12 46.2 1.0 1.2 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain DAO PF01266.24 gi|218883521|ref|YP_002427903.1| - 6.5e-56 190.4 0.0 7.4e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|218883521|ref|YP_002427903.1| - 4.2e-10 39.4 1.9 2.4e-05 23.8 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|218883521|ref|YP_002427903.1| - 4.5e-08 32.6 0.0 1e-07 31.4 0.0 1.6 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|218883521|ref|YP_002427903.1| - 2.5e-07 29.8 0.3 0.0064 15.2 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.14 gi|218883521|ref|YP_002427903.1| - 1e-06 28.2 2.1 0.0029 16.9 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|218883521|ref|YP_002427903.1| - 2e-05 24.0 0.1 4.3e-05 22.9 0.2 1.5 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.6 gi|218883521|ref|YP_002427903.1| - 2.2e-05 24.5 0.3 0.051 13.6 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|218883521|ref|YP_002427903.1| - 0.0047 17.1 0.2 0.012 15.9 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|218883521|ref|YP_002427903.1| - 0.0076 15.5 1.1 0.017 14.3 0.2 1.9 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|218883521|ref|YP_002427903.1| - 0.012 15.0 0.9 0.028 13.8 0.9 1.7 1 1 0 1 1 1 0 FAD dependent oxidoreductase TetR_C_34 PF17929.1 gi|218883521|ref|YP_002427903.1| - 0.053 13.6 0.0 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Pyr_redox PF00070.27 gi|218883521|ref|YP_002427903.1| - 0.061 13.9 2.0 0.43 11.2 0.2 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|218883521|ref|YP_002427903.1| - 0.062 12.4 0.6 2.3 7.2 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|218883521|ref|YP_002427903.1| - 0.081 13.0 0.2 0.17 11.9 0.2 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|218883521|ref|YP_002427903.1| - 0.12 12.8 0.0 0.27 11.7 0.0 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|218883521|ref|YP_002427903.1| - 0.19 10.5 0.8 0.26 10.1 0.2 1.5 2 0 0 2 2 2 0 Tryptophan halogenase Amino_oxidase PF01593.24 gi|218883521|ref|YP_002427903.1| - 0.19 10.9 0.0 1.8 7.8 0.0 2.0 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase TrkA_N PF02254.18 gi|218883521|ref|YP_002427903.1| - 0.41 10.9 2.6 3.3 8.0 0.4 2.4 2 0 0 2 2 2 0 TrkA-N domain MoaE PF02391.17 gi|218883522|ref|YP_002427904.1| - 4e-23 81.8 0.1 4.9e-23 81.6 0.1 1.1 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|218883523|ref|YP_002427905.1| - 1.3e-12 48.1 0.0 1.6e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|218883523|ref|YP_002427905.1| - 0.0014 18.4 0.0 0.0031 17.3 0.0 1.8 1 1 0 1 1 1 1 Mut7-C ubiquitin ThiS-like PF14453.6 gi|218883523|ref|YP_002427905.1| - 0.0024 17.9 0.0 0.0078 16.2 0.0 1.8 1 1 0 1 1 1 1 ThiS-like ubiquitin TGS PF02824.21 gi|218883523|ref|YP_002427905.1| - 0.0035 17.3 0.1 0.006 16.6 0.1 1.3 1 0 0 1 1 1 1 TGS domain N_formyltrans_C PF18216.1 gi|218883523|ref|YP_002427905.1| - 0.0062 16.2 0.1 0.012 15.3 0.0 1.5 2 0 0 2 2 2 1 N-formyltransferase dimerization C-terminal domain vWF_A PF12450.8 gi|218883523|ref|YP_002427905.1| - 0.13 12.2 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 von Willebrand factor MoaC PF01967.21 gi|218883524|ref|YP_002427906.1| - 3.5e-46 156.7 0.9 3.9e-46 156.5 0.9 1.0 1 0 0 1 1 1 1 MoaC family Radical_SAM PF04055.21 gi|218883525|ref|YP_002427907.1| - 1e-20 74.8 0.8 7.7e-20 71.9 0.6 2.3 1 1 1 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|218883525|ref|YP_002427907.1| - 1e-15 57.8 0.0 1.5e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|218883525|ref|YP_002427907.1| - 7.5e-07 29.3 0.0 1.7e-06 28.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|218883525|ref|YP_002427907.1| - 8.3e-06 26.1 0.0 1.8e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain ABC_tran PF00005.27 gi|218883526|ref|YP_002427908.1| - 5.1e-29 101.5 0.0 7.5e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883526|ref|YP_002427908.1| - 1.8e-13 51.0 2.2 5.8e-06 26.3 0.4 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|218883526|ref|YP_002427908.1| - 8.9e-05 23.1 0.7 0.00017 22.1 0.7 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|218883526|ref|YP_002427908.1| - 0.00038 20.3 0.1 0.0015 18.3 0.1 1.9 2 0 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|218883526|ref|YP_002427908.1| - 0.00055 18.9 0.0 0.0046 15.8 0.1 1.9 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|218883526|ref|YP_002427908.1| - 0.00059 19.5 0.1 0.0014 18.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|218883526|ref|YP_002427908.1| - 0.0032 17.9 0.0 0.026 14.9 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|218883526|ref|YP_002427908.1| - 0.0049 16.5 0.1 0.0077 15.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|218883526|ref|YP_002427908.1| - 0.011 15.2 0.3 0.055 12.9 0.3 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|218883526|ref|YP_002427908.1| - 0.011 16.0 0.3 0.3 11.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|218883526|ref|YP_002427908.1| - 0.034 14.2 0.0 0.15 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|218883526|ref|YP_002427908.1| - 0.042 14.2 0.0 0.082 13.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|218883526|ref|YP_002427908.1| - 0.053 13.4 0.7 0.083 12.8 0.1 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea RecA PF00154.21 gi|218883526|ref|YP_002427908.1| - 0.07 12.6 0.1 0.74 9.2 0.0 2.0 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_33 PF13671.6 gi|218883526|ref|YP_002427908.1| - 0.087 13.0 0.0 0.21 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|218883526|ref|YP_002427908.1| - 0.13 11.3 0.1 0.2 10.6 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein BPD_transp_1 PF00528.22 gi|218883527|ref|YP_002427909.1| - 9e-17 61.4 21.4 9e-17 61.4 21.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|218883528|ref|YP_002427910.1| - 2.7e-29 102.6 0.0 3.4e-29 102.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|218883528|ref|YP_002427910.1| - 0.00011 22.3 0.0 0.00025 21.1 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|218883528|ref|YP_002427910.1| - 0.0037 16.9 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.20 gi|218883528|ref|YP_002427910.1| - 0.054 12.8 0.1 0.3 10.4 0.1 1.9 1 1 0 1 1 1 0 LysR substrate binding domain MoCF_biosynth PF00994.24 gi|218883529|ref|YP_002427911.1| - 4.4e-17 62.1 0.3 6.9e-17 61.5 0.3 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain HU-CCDC81_bac_1 PF18174.1 gi|218883529|ref|YP_002427911.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 1 BATS PF06968.13 gi|218883529|ref|YP_002427911.1| - 0.16 12.1 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain DUF89 PF01937.19 gi|218883530|ref|YP_002427912.1| - 1.2e-33 116.5 0.0 2e-33 115.9 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF89 DUF2314 PF10077.9 gi|218883530|ref|YP_002427912.1| - 0.12 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2314) DUF1959 PF09218.10 gi|218883532|ref|YP_002427914.1| - 0.059 13.5 0.4 0.11 12.6 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1959) ENT PF03735.14 gi|218883532|ref|YP_002427914.1| - 0.14 12.2 1.7 8.6 6.5 0.1 2.7 2 1 0 2 2 2 0 ENT domain SIS PF01380.22 gi|218883533|ref|YP_002427915.1| - 2.9e-20 72.5 0.0 1.2e-19 70.5 0.0 1.8 2 0 0 2 2 2 1 SIS domain SIS_2 PF13580.6 gi|218883533|ref|YP_002427915.1| - 1.4e-13 51.0 1.7 2.9e-09 37.1 0.5 2.2 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|218883533|ref|YP_002427915.1| - 0.0031 17.4 1.3 0.77 9.6 0.0 2.2 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase 2-Hacid_dh_C PF02826.19 gi|218883533|ref|YP_002427915.1| - 0.01 15.2 0.6 2.4 7.5 0.0 2.1 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GAPES2 PF17156.4 gi|218883533|ref|YP_002427915.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Gammaproteobacterial periplasmic sensor domain Radical_SAM PF04055.21 gi|218883534|ref|YP_002427916.1| - 5.5e-07 30.1 0.0 1.6e-06 28.6 0.0 1.7 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|218883534|ref|YP_002427916.1| - 9.1e-05 22.3 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1848) zf-ZPR1 PF03367.13 gi|218883535|ref|YP_002427917.1| - 1.5e-31 109.4 0.0 1.7e-31 109.2 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Rubredoxin_2 PF18073.1 gi|218883535|ref|YP_002427917.1| - 0.012 15.3 2.6 2 8.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain eIF-3_zeta PF05091.12 gi|218883535|ref|YP_002427917.1| - 0.024 13.6 0.2 0.033 13.2 0.2 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) DUF2790 PF10976.8 gi|218883535|ref|YP_002427917.1| - 0.031 14.3 0.1 0.083 12.9 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2790) zf-C4_Topoisom PF01396.19 gi|218883535|ref|YP_002427917.1| - 0.074 12.8 0.7 0.3 10.9 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2H2_3 PF13878.6 gi|218883535|ref|YP_002427917.1| - 0.085 12.7 0.9 5.4 6.9 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Prim_Zn_Ribbon PF08273.12 gi|218883535|ref|YP_002427917.1| - 0.31 11.4 3.0 0.66 10.3 0.6 2.4 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase RNA_POL_M_15KD PF02150.16 gi|218883535|ref|YP_002427917.1| - 0.79 9.6 5.9 2.5 8.1 0.2 3.0 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Peptidase_M29 PF02073.15 gi|218883536|ref|YP_002427918.1| - 1.9e-106 356.3 0.0 2.1e-106 356.1 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF1107 PF06526.12 gi|218883536|ref|YP_002427918.1| - 0.16 11.9 0.6 55 3.8 0.0 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF1107) Ferritin PF00210.24 gi|218883537|ref|YP_002427919.1| - 6.5e-34 116.9 3.4 7.4e-34 116.7 3.4 1.0 1 0 0 1 1 1 1 Ferritin-like domain CARD PF00619.21 gi|218883537|ref|YP_002427919.1| - 0.00027 20.9 0.0 0.0006 19.8 0.0 1.6 1 0 0 1 1 1 1 Caspase recruitment domain Rubrerythrin PF02915.17 gi|218883537|ref|YP_002427919.1| - 0.0022 18.4 1.2 0.0034 17.8 1.2 1.4 1 1 0 1 1 1 1 Rubrerythrin Coat_F PF07875.12 gi|218883537|ref|YP_002427919.1| - 0.03 14.6 3.4 3.3 8.0 0.2 2.6 3 0 0 3 3 3 0 Coat F domain CitG PF01874.16 gi|218883538|ref|YP_002427920.1| - 3.6e-53 181.0 0.0 4.2e-53 180.8 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Oxidored_molyb PF00174.19 gi|218883539|ref|YP_002427921.1| - 7.8e-35 120.0 0.0 1.2e-34 119.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain OTCace PF00185.24 gi|218883541|ref|YP_002427923.1| - 3.6e-42 144.1 0.0 7.1e-42 143.2 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|218883541|ref|YP_002427923.1| - 4.2e-36 124.2 0.0 7.3e-36 123.4 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Methyltransf_31 PF13847.6 gi|218883541|ref|YP_002427923.1| - 0.056 13.2 0.0 0.31 10.8 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Limkain-b1 PF11608.8 gi|218883541|ref|YP_002427923.1| - 0.21 11.7 0.0 0.39 10.8 0.0 1.4 1 0 0 1 1 1 0 Limkain b1 SBP_bac_5 PF00496.22 gi|218883542|ref|YP_002427924.1| - 1.3e-74 251.4 2.2 1.6e-74 251.2 2.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|218883543|ref|YP_002427925.1| - 2.4e-28 99.1 16.2 2.4e-28 99.1 16.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|218883544|ref|YP_002427926.1| - 2.3e-26 92.7 15.0 2.3e-26 92.7 15.0 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|218883544|ref|YP_002427926.1| - 0.00078 19.4 0.2 0.00078 19.4 0.2 3.2 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|218883545|ref|YP_002427927.1| - 1.2e-25 90.6 0.0 1.6e-25 90.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|218883545|ref|YP_002427927.1| - 9.1e-15 54.9 0.0 1.7e-14 54.1 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|218883545|ref|YP_002427927.1| - 9.1e-08 32.3 0.7 0.00027 20.9 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218883545|ref|YP_002427927.1| - 8.5e-06 25.4 0.0 1.4e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|218883545|ref|YP_002427927.1| - 0.00016 21.9 0.0 0.00042 20.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|218883545|ref|YP_002427927.1| - 0.0004 20.9 0.0 0.00058 20.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|218883545|ref|YP_002427927.1| - 0.00067 19.3 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|218883545|ref|YP_002427927.1| - 0.0045 16.9 0.0 0.0076 16.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|218883545|ref|YP_002427927.1| - 0.0063 16.3 0.0 0.062 13.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|218883545|ref|YP_002427927.1| - 0.0084 16.5 0.0 0.022 15.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.22 gi|218883545|ref|YP_002427927.1| - 0.014 15.8 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Herpes_UL74 PF07982.12 gi|218883545|ref|YP_002427927.1| - 0.062 12.3 0.0 0.086 11.8 0.0 1.1 1 0 0 1 1 1 0 Herpes UL74 glycoproteins AAA_13 PF13166.6 gi|218883545|ref|YP_002427927.1| - 0.11 11.1 0.1 0.42 9.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|218883545|ref|YP_002427927.1| - 0.12 12.5 0.4 0.38 10.9 0.2 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase TniB PF05621.11 gi|218883545|ref|YP_002427927.1| - 0.13 11.7 0.1 7.8 5.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein Mg_chelatase PF01078.21 gi|218883545|ref|YP_002427927.1| - 0.13 11.6 0.0 0.8 9.1 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PRK PF00485.18 gi|218883545|ref|YP_002427927.1| - 0.16 11.7 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.27 gi|218883546|ref|YP_002427928.1| - 4.3e-33 114.7 0.0 6.5e-33 114.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883546|ref|YP_002427928.1| - 7.1e-10 39.2 3.4 0.00018 21.4 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|218883546|ref|YP_002427928.1| - 0.00013 22.4 0.1 0.0002 21.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|218883546|ref|YP_002427928.1| - 0.00023 20.7 0.4 0.0098 15.3 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|218883546|ref|YP_002427928.1| - 0.0006 19.5 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|218883546|ref|YP_002427928.1| - 0.001 19.3 1.0 0.0063 16.8 1.0 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|218883546|ref|YP_002427928.1| - 0.0011 18.9 0.3 0.0039 17.1 0.1 1.8 2 0 0 2 2 2 1 NACHT domain AAA_25 PF13481.6 gi|218883546|ref|YP_002427928.1| - 0.0018 17.9 0.7 0.012 15.2 0.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|218883546|ref|YP_002427928.1| - 0.0024 17.9 1.4 0.043 13.8 0.1 2.5 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|218883546|ref|YP_002427928.1| - 0.0032 17.4 0.2 0.0081 16.1 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase Pox_A32 PF04665.12 gi|218883546|ref|YP_002427928.1| - 0.0044 16.5 0.2 0.017 14.6 0.0 1.8 2 0 0 2 2 2 1 Poxvirus A32 protein DEAD PF00270.29 gi|218883546|ref|YP_002427928.1| - 0.0052 16.6 0.0 1.8 8.3 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|218883546|ref|YP_002427928.1| - 0.0053 16.5 0.0 0.028 14.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.12 gi|218883546|ref|YP_002427928.1| - 0.0057 17.2 0.0 0.0096 16.4 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_15 PF13175.6 gi|218883546|ref|YP_002427928.1| - 0.008 15.9 0.1 0.046 13.4 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|218883546|ref|YP_002427928.1| - 0.0081 16.7 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|218883546|ref|YP_002427928.1| - 0.01 15.7 0.2 0.024 14.5 0.0 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SSE PF00437.20 gi|218883546|ref|YP_002427928.1| - 0.01 14.9 0.0 0.018 14.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.19 gi|218883546|ref|YP_002427928.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TniB PF05621.11 gi|218883546|ref|YP_002427928.1| - 0.014 14.8 1.4 0.94 8.9 0.2 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_33 PF13671.6 gi|218883546|ref|YP_002427928.1| - 0.015 15.4 0.0 0.021 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|218883546|ref|YP_002427928.1| - 0.016 14.9 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|218883546|ref|YP_002427928.1| - 0.025 14.0 0.0 0.055 12.8 0.0 1.6 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|218883546|ref|YP_002427928.1| - 0.027 14.4 0.1 0.048 13.6 0.1 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|218883546|ref|YP_002427928.1| - 0.034 14.5 0.2 0.34 11.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|218883546|ref|YP_002427928.1| - 0.042 13.9 0.1 0.1 12.7 0.1 1.6 1 0 0 1 1 1 0 Helicase HerA, central domain AAA PF00004.29 gi|218883546|ref|YP_002427928.1| - 0.048 14.1 0.2 0.47 10.9 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.9 gi|218883546|ref|YP_002427928.1| - 0.054 13.2 0.5 0.16 11.7 0.2 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|218883546|ref|YP_002427928.1| - 0.057 13.6 0.1 0.096 12.9 0.1 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_10 PF12846.7 gi|218883546|ref|YP_002427928.1| - 0.058 12.3 0.1 0.094 11.6 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|218883546|ref|YP_002427928.1| - 0.062 12.7 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_13 PF13166.6 gi|218883546|ref|YP_002427928.1| - 0.066 11.9 0.1 4.9 5.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|218883546|ref|YP_002427928.1| - 0.069 13.1 0.6 0.22 11.4 0.1 1.9 2 0 0 2 2 2 0 NTPase MMR_HSR1 PF01926.23 gi|218883546|ref|YP_002427928.1| - 0.069 13.2 0.2 0.16 12.1 0.1 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 gi|218883546|ref|YP_002427928.1| - 0.077 11.8 0.3 8 5.1 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 gi|218883546|ref|YP_002427928.1| - 0.078 12.7 0.3 1.7 8.3 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DLIC PF05783.11 gi|218883546|ref|YP_002427928.1| - 0.089 11.6 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) CbiA PF01656.23 gi|218883546|ref|YP_002427928.1| - 0.095 12.8 0.0 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Sigma54_activat PF00158.26 gi|218883546|ref|YP_002427928.1| - 0.11 12.1 0.1 0.48 10.1 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|218883546|ref|YP_002427928.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATP-synt_ab PF00006.25 gi|218883546|ref|YP_002427928.1| - 0.18 11.4 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TsaE PF02367.17 gi|218883546|ref|YP_002427928.1| - 0.18 11.8 0.0 0.4 10.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE G-alpha PF00503.20 gi|218883546|ref|YP_002427928.1| - 0.22 10.6 0.0 0.32 10.1 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit tRNA-synt_2d PF01409.20 gi|218883548|ref|YP_002427930.1| - 3.8e-78 262.4 0.0 5e-78 262.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|218883548|ref|YP_002427930.1| - 2.2e-06 27.0 1.1 0.0035 16.5 0.1 2.9 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|218883548|ref|YP_002427930.1| - 2.1e-05 24.1 0.0 0.0024 17.3 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain Fer4_14 PF13394.6 gi|218883549|ref|YP_002427931.1| - 0.0014 18.8 0.0 0.0033 17.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|218883549|ref|YP_002427931.1| - 0.0056 17.0 0.0 0.013 15.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|218883549|ref|YP_002427931.1| - 0.097 13.0 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 Radical SAM superfamily QueT PF06177.11 gi|218883550|ref|YP_002427932.1| - 2.4e-28 99.2 16.9 2.7e-28 99.1 16.9 1.0 1 0 0 1 1 1 1 QueT transporter ECF_trnsprt PF12822.7 gi|218883550|ref|YP_002427932.1| - 0.41 10.7 19.8 0.7 10.0 19.8 1.4 1 1 0 1 1 1 0 ECF transporter, substrate-specific component ABC_tran PF00005.27 gi|218883551|ref|YP_002427933.1| - 3.8e-22 79.3 0.0 5e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883551|ref|YP_002427933.1| - 5.1e-11 42.9 1.8 7.2e-06 26.0 1.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218883551|ref|YP_002427933.1| - 1.3e-09 37.8 0.0 2.4e-08 33.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|218883551|ref|YP_002427933.1| - 1.4e-05 25.7 0.0 1.7e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|218883551|ref|YP_002427933.1| - 9.3e-05 22.1 0.1 0.00019 21.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|218883551|ref|YP_002427933.1| - 0.00041 20.2 0.0 0.0006 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|218883551|ref|YP_002427933.1| - 0.0048 16.5 0.0 0.0074 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|218883551|ref|YP_002427933.1| - 0.0048 16.3 0.0 0.0079 15.6 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DLIC PF05783.11 gi|218883551|ref|YP_002427933.1| - 0.0079 15.1 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) AAA_28 PF13521.6 gi|218883551|ref|YP_002427933.1| - 0.022 15.0 0.0 0.032 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|218883551|ref|YP_002427933.1| - 0.022 14.7 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|218883551|ref|YP_002427933.1| - 0.029 14.3 0.0 0.043 13.7 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|218883551|ref|YP_002427933.1| - 0.035 13.8 0.0 0.056 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|218883551|ref|YP_002427933.1| - 0.048 13.8 0.1 0.081 13.1 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|218883551|ref|YP_002427933.1| - 0.054 13.9 0.0 0.082 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|218883551|ref|YP_002427933.1| - 0.1 13.0 0.0 0.25 11.8 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|218883551|ref|YP_002427933.1| - 0.12 12.4 0.1 0.37 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.18 gi|218883551|ref|YP_002427933.1| - 0.18 11.2 0.1 0.34 10.2 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|218883551|ref|YP_002427933.1| - 0.21 11.9 0.3 0.37 11.1 0.3 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|218883551|ref|YP_002427933.1| - 0.22 10.1 0.0 2.7 6.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF4105 PF13387.6 gi|218883552|ref|YP_002427934.1| - 0.12 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4105) DUF4227 PF14004.6 gi|218883552|ref|YP_002427934.1| - 1.8 8.6 5.9 0.58 10.2 2.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4227) RHD3 PF05879.12 gi|218883552|ref|YP_002427934.1| - 3.4 5.7 5.2 4.5 5.3 5.2 1.1 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) Adenine_deam_C PF13382.6 gi|218883553|ref|YP_002427935.1| - 1e-57 194.2 0.2 2.3e-57 193.0 0.1 1.7 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|218883553|ref|YP_002427935.1| - 2e-26 93.1 0.0 5.4e-25 88.4 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|218883553|ref|YP_002427935.1| - 1.6e-09 37.8 0.3 0.00046 19.8 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|218883554|ref|YP_002427936.1| - 3.8e-65 220.5 0.0 4.6e-65 220.2 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|218883554|ref|YP_002427936.1| - 4.9e-17 62.5 0.4 7.5e-13 48.8 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase family Aminotran_5 PF00266.19 gi|218883556|ref|YP_002427938.1| - 1.3e-142 475.1 0.0 1.5e-142 474.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|218883556|ref|YP_002427938.1| - 2.2e-08 33.8 0.0 3.4e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|218883556|ref|YP_002427938.1| - 3.2e-06 25.9 0.0 2.7e-05 22.9 0.0 2.2 3 0 0 3 3 3 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|218883556|ref|YP_002427938.1| - 0.0032 16.8 0.0 0.0039 16.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|218883556|ref|YP_002427938.1| - 0.0088 15.1 0.0 0.015 14.3 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase OrfB_Zn_ribbon PF07282.11 gi|218883557|ref|YP_002427939.1| - 1.8e-18 66.2 0.0 3.4e-18 65.3 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain BTRD1 PF17660.1 gi|218883557|ref|YP_002427939.1| - 0.064 13.1 0.3 1.6 8.6 0.0 2.7 2 0 0 2 2 2 0 Bacterial tandem repeat domain 1 CBM9_2 PF16011.5 gi|218883557|ref|YP_002427939.1| - 0.13 12.0 0.1 0.22 11.2 0.1 1.3 1 0 0 1 1 1 0 Carbohydrate-binding family 9 PsbU PF06514.11 gi|218883557|ref|YP_002427939.1| - 0.13 12.3 0.2 1.4 9.0 0.0 2.4 2 1 0 2 2 2 0 Photosystem II 12 kDa extrinsic protein (PsbU) Resolvase PF00239.21 gi|218883558|ref|YP_002427940.1| - 6.3e-24 84.7 0.7 1e-23 84.1 0.6 1.4 1 1 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|218883558|ref|YP_002427940.1| - 3.9e-08 33.4 0.0 8.1e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|218883558|ref|YP_002427940.1| - 0.025 14.3 1.3 0.07 12.9 0.0 2.4 4 0 0 4 4 4 0 MerR family regulatory protein MFS_1 PF07690.16 gi|218883560|ref|YP_002427942.1| - 0.00069 18.6 1.2 0.00071 18.6 1.2 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1 PF07690.16 gi|218883561|ref|YP_002427943.1| - 0.0012 17.8 6.3 0.0017 17.4 6.3 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|218883561|ref|YP_002427943.1| - 0.009 14.4 1.0 0.011 14.2 1.0 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector TrmO PF01980.16 gi|218883562|ref|YP_002427944.1| - 2e-30 105.5 0.0 2.9e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 tRNA-methyltransferase O MerR-DNA-bind PF09278.11 gi|218883562|ref|YP_002427944.1| - 0.085 13.4 0.0 1.7 9.2 0.0 2.2 2 0 0 2 2 2 0 MerR, DNA binding CBS PF00571.28 gi|218883563|ref|YP_002427945.1| - 1.5e-32 111.8 3.2 4.7e-17 62.2 0.3 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|218883563|ref|YP_002427945.1| - 0.11 12.8 0.6 5.8 7.3 0.0 2.8 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Glyco_hydro_1 PF00232.18 gi|218883564|ref|YP_002427946.1| - 2.5e-79 266.8 5.4 2.4e-78 263.6 5.4 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|218883564|ref|YP_002427946.1| - 0.00024 20.7 0.1 0.00036 20.0 0.1 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_42 PF02449.15 gi|218883564|ref|YP_002427946.1| - 0.0003 20.2 0.0 0.00064 19.2 0.0 1.5 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_10 PF00331.20 gi|218883564|ref|YP_002427946.1| - 0.034 13.3 0.3 1.3 8.1 0.2 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 10 CMD PF02627.20 gi|218883565|ref|YP_002427947.1| - 3.7e-19 68.5 0.1 4.8e-19 68.2 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family ASD2 PF08687.11 gi|218883565|ref|YP_002427947.1| - 0.037 13.6 0.1 0.051 13.1 0.1 1.1 1 0 0 1 1 1 0 Apx/Shroom domain ASD2 Nore1-SARAH PF16517.5 gi|218883565|ref|YP_002427947.1| - 0.13 12.2 0.3 2.8 7.9 0.0 2.2 2 0 0 2 2 2 0 Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain ABC2_membrane PF01061.24 gi|218883566|ref|YP_002427948.1| - 6e-05 22.6 22.6 6e-05 22.6 22.6 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|218883566|ref|YP_002427948.1| - 4 6.4 30.3 0.042 13.0 17.0 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|218883567|ref|YP_002427949.1| - 0.0018 17.4 15.7 0.0018 17.4 15.7 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein PEP_hydrolase PF09370.10 gi|218883567|ref|YP_002427949.1| - 0.16 11.2 0.1 0.24 10.6 0.1 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like DUF2070 PF09843.9 gi|218883567|ref|YP_002427949.1| - 1.6 6.9 16.4 0.4 8.9 13.1 1.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|218883568|ref|YP_002427950.1| - 1.5e-27 96.8 0.0 2.6e-27 96.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883568|ref|YP_002427950.1| - 2.3e-13 50.6 1.1 4.5e-10 39.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|218883568|ref|YP_002427950.1| - 7.3e-08 33.0 0.1 1.7e-07 31.9 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) MukB PF04310.12 gi|218883568|ref|YP_002427950.1| - 0.011 15.5 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_29 PF13555.6 gi|218883568|ref|YP_002427950.1| - 0.018 14.8 0.0 0.037 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|218883568|ref|YP_002427950.1| - 0.019 14.6 0.1 0.032 13.9 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|218883568|ref|YP_002427950.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.4 2 0 0 2 2 2 0 Rad17 P-loop domain MeaB PF03308.16 gi|218883568|ref|YP_002427950.1| - 0.021 13.8 0.1 0.039 12.9 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_15 PF13175.6 gi|218883568|ref|YP_002427950.1| - 0.029 14.1 0.0 3.4 7.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 gi|218883568|ref|YP_002427950.1| - 0.034 14.5 0.1 0.061 13.7 0.1 1.5 1 0 0 1 1 1 0 AAA ATPase domain PEPCK_ATP PF01293.20 gi|218883568|ref|YP_002427950.1| - 0.07 11.8 0.2 0.2 10.3 0.2 1.7 1 1 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Arf PF00025.21 gi|218883568|ref|YP_002427950.1| - 0.081 12.4 0.2 2.7 7.4 0.1 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family DUF1641 PF07849.11 gi|218883568|ref|YP_002427950.1| - 0.48 10.3 0.0 0.48 10.3 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1641) GalP_UDP_transf PF01087.22 gi|218883569|ref|YP_002427951.1| - 1.2e-18 68.2 0.0 1.3e-17 64.8 0.0 2.2 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|218883569|ref|YP_002427951.1| - 1.5e-13 50.8 0.0 2.3e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF4931 PF16285.5 gi|218883569|ref|YP_002427951.1| - 3.3e-07 29.9 0.0 1.8e-06 27.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4931) DcpS_C PF11969.8 gi|218883569|ref|YP_002427951.1| - 2.7e-06 27.9 0.1 1e-05 25.9 0.0 1.9 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.23 gi|218883569|ref|YP_002427951.1| - 0.0014 19.3 0.0 0.041 14.6 0.0 2.2 2 0 0 2 2 2 1 HIT domain DUF4921 PF16268.5 gi|218883569|ref|YP_002427951.1| - 0.18 10.6 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4921) GHMP_kinases_C PF08544.13 gi|218883570|ref|YP_002427952.1| - 2.7e-13 50.1 0.0 7.1e-13 48.7 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|218883570|ref|YP_002427952.1| - 1e-12 48.1 2.7 2.2e-12 47.0 0.9 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|218883570|ref|YP_002427952.1| - 4.7e-11 42.1 0.1 1.4e-10 40.6 0.0 1.8 2 0 0 2 2 2 1 Galactokinase galactose-binding signature Glyco_hydro_53 PF07745.13 gi|218883570|ref|YP_002427952.1| - 0.16 10.9 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 53 Epimerase PF01370.21 gi|218883571|ref|YP_002427953.1| - 1.3e-51 175.4 0.1 1.7e-51 175.0 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|218883571|ref|YP_002427953.1| - 2.1e-46 158.9 0.0 2.5e-46 158.6 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|218883571|ref|YP_002427953.1| - 1.7e-19 69.9 0.2 2.1e-19 69.6 0.2 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|218883571|ref|YP_002427953.1| - 3.3e-16 59.3 0.1 3.5e-15 55.9 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|218883571|ref|YP_002427953.1| - 2.4e-14 53.1 0.0 3.1e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|218883571|ref|YP_002427953.1| - 8.7e-10 38.2 0.0 6.9e-06 25.4 0.0 2.4 1 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|218883571|ref|YP_002427953.1| - 3e-09 37.0 0.0 4.3e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|218883571|ref|YP_002427953.1| - 0.0063 16.1 0.0 0.063 12.8 0.0 2.0 2 0 0 2 2 2 1 NmrA-like family KR PF08659.10 gi|218883571|ref|YP_002427953.1| - 0.011 15.7 0.1 0.088 12.7 0.0 2.2 2 0 0 2 2 2 0 KR domain DUF229 PF02995.17 gi|218883572|ref|YP_002427954.1| - 0.019 13.6 0.0 0.019 13.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF229) MgtE PF01769.16 gi|218883573|ref|YP_002427955.1| - 1e-17 64.7 30.1 2.8e-10 40.6 10.3 3.5 2 1 2 4 4 4 2 Divalent cation transporter PhoU PF01895.19 gi|218883574|ref|YP_002427956.1| - 1.1e-06 29.0 0.6 0.062 13.8 0.0 2.6 2 0 0 2 2 2 2 PhoU domain TrkA_C PF02080.21 gi|218883574|ref|YP_002427956.1| - 3.1e-05 23.7 0.0 0.26 11.2 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain Kinesin_assoc PF16183.5 gi|218883574|ref|YP_002427956.1| - 0.0022 18.2 0.0 0.0037 17.4 0.0 1.3 1 0 0 1 1 1 1 Kinesin-associated PhoU_div PF01865.16 gi|218883574|ref|YP_002427956.1| - 0.0029 17.0 0.4 0.049 12.9 0.1 2.5 2 1 0 2 2 2 1 Protein of unknown function DUF47 TPR_19 PF14559.6 gi|218883574|ref|YP_002427956.1| - 0.15 12.6 0.0 0.75 10.3 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat Pilin_N PF07790.11 gi|218883575|ref|YP_002427957.1| - 7.1e-05 23.7 7.7 7.1e-05 23.6 5.4 2.0 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Calycin_like PF13944.6 gi|218883575|ref|YP_002427957.1| - 0.022 15.1 3.4 0.034 14.4 3.4 1.4 1 0 0 1 1 1 0 Calycin-like beta-barrel domain ABC_tran PF00005.27 gi|218883579|ref|YP_002427961.1| - 1.6e-17 64.3 0.1 5.4e-17 62.6 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|218883579|ref|YP_002427961.1| - 2.9e-07 30.6 0.4 0.00037 20.4 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|218883579|ref|YP_002427961.1| - 0.00054 20.5 0.0 0.0007 20.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|218883579|ref|YP_002427961.1| - 0.00082 18.2 0.0 0.0012 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|218883579|ref|YP_002427961.1| - 0.0035 17.8 0.0 0.0056 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|218883579|ref|YP_002427961.1| - 0.0064 16.8 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|218883579|ref|YP_002427961.1| - 0.0081 15.9 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|218883579|ref|YP_002427961.1| - 0.0096 15.9 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|218883579|ref|YP_002427961.1| - 0.015 15.2 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|218883579|ref|YP_002427961.1| - 0.021 14.8 0.4 0.18 11.8 0.1 2.2 1 1 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|218883579|ref|YP_002427961.1| - 0.037 14.5 0.0 0.091 13.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|218883579|ref|YP_002427961.1| - 0.037 13.1 0.0 0.053 12.6 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PIF1 PF05970.14 gi|218883579|ref|YP_002427961.1| - 0.052 12.7 0.1 0.092 11.9 0.1 1.3 1 0 0 1 1 1 0 PIF1-like helicase RNA_helicase PF00910.22 gi|218883579|ref|YP_002427961.1| - 0.076 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|218883579|ref|YP_002427961.1| - 0.11 12.2 0.1 0.45 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|218883579|ref|YP_002427961.1| - 0.12 11.2 0.1 0.2 10.4 0.1 1.4 1 1 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_15 PF13175.6 gi|218883579|ref|YP_002427961.1| - 0.13 11.9 0.1 0.24 11.1 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|218883579|ref|YP_002427961.1| - 0.16 11.7 0.1 0.36 10.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain DUF3584 PF12128.8 gi|218883579|ref|YP_002427961.1| - 0.19 9.2 0.1 0.26 8.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.27 gi|218883580|ref|YP_002427962.1| - 4.8e-09 36.8 0.0 5.7e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter T2SSE PF00437.20 gi|218883580|ref|YP_002427962.1| - 0.0022 17.1 0.0 0.0028 16.8 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|218883580|ref|YP_002427962.1| - 0.0027 17.4 0.1 0.0041 16.8 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF87 PF01935.17 gi|218883580|ref|YP_002427962.1| - 0.0028 17.8 0.3 0.0044 17.2 0.3 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|218883580|ref|YP_002427962.1| - 0.004 16.5 0.1 0.0057 16.0 0.1 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|218883580|ref|YP_002427962.1| - 0.015 15.6 0.0 0.027 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|218883580|ref|YP_002427962.1| - 0.033 13.9 0.1 0.051 13.3 0.1 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|218883580|ref|YP_002427962.1| - 0.039 13.5 0.1 0.059 12.9 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|218883580|ref|YP_002427962.1| - 0.048 14.2 0.2 0.08 13.5 0.2 1.4 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|218883580|ref|YP_002427962.1| - 0.048 13.2 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|218883580|ref|YP_002427962.1| - 0.057 13.7 0.0 0.078 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|218883580|ref|YP_002427962.1| - 0.08 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|218883580|ref|YP_002427962.1| - 0.088 13.2 0.4 0.1 13.0 0.4 1.3 1 1 0 1 1 1 0 AAA ATPase domain Sigma54_activat PF00158.26 gi|218883580|ref|YP_002427962.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain CobU PF02283.16 gi|218883580|ref|YP_002427962.1| - 0.17 11.5 0.1 0.27 10.8 0.1 1.3 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ATPase PF06745.13 gi|218883580|ref|YP_002427962.1| - 0.19 11.0 0.1 0.27 10.5 0.1 1.2 1 0 0 1 1 1 0 KaiC Nitroreductase PF00881.24 gi|218883582|ref|YP_002427964.1| - 2.5e-30 105.8 1.7 8e-17 61.8 0.8 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|218883582|ref|YP_002427964.1| - 1.1e-14 54.5 0.0 2.4e-05 24.0 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase PYC_OADA PF02436.18 gi|218883582|ref|YP_002427964.1| - 0.036 13.8 0.0 0.049 13.4 0.0 1.2 1 0 0 1 1 1 0 Conserved carboxylase domain Melibiase_2_C PF17450.2 gi|218883582|ref|YP_002427964.1| - 0.15 12.3 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Alpha galactosidase A C-terminal beta sandwich domain Rhomboid PF01694.22 gi|218883583|ref|YP_002427965.1| - 8.3e-36 123.3 19.5 8.3e-36 123.3 19.5 2.1 3 0 0 3 3 3 1 Rhomboid family HTH_33 PF13592.6 gi|218883583|ref|YP_002427965.1| - 0.13 11.9 0.1 0.29 10.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix DUF2633 PF11119.8 gi|218883583|ref|YP_002427965.1| - 2.7 7.9 11.2 2.1 8.3 2.2 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2633) Alpha-amylase PF00128.24 gi|218883584|ref|YP_002427966.1| - 5.7e-65 220.1 0.0 9.2e-65 219.4 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 gi|218883584|ref|YP_002427966.1| - 0.0014 18.7 0.0 0.0035 17.4 0.0 1.7 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain Glyco_hydro_70 PF02324.16 gi|218883584|ref|YP_002427966.1| - 0.0031 15.8 0.0 0.0048 15.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 70 Alpha-amylase_C PF02806.18 gi|218883584|ref|YP_002427966.1| - 0.0087 16.5 0.0 0.047 14.2 0.0 2.3 1 1 1 2 2 2 1 Alpha amylase, C-terminal all-beta domain Cation_efflux PF01545.21 gi|218883585|ref|YP_002427967.1| - 8.7e-42 143.1 14.3 1.1e-41 142.8 14.3 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|218883585|ref|YP_002427967.1| - 1.4e-17 63.6 1.5 2.2e-17 62.9 1.5 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter SLATT_3 PF18184.1 gi|218883585|ref|YP_002427967.1| - 0.12 12.5 0.3 0.3 11.2 0.3 1.6 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 3 PAP2 PF01569.21 gi|218883585|ref|YP_002427967.1| - 4.9 6.9 14.5 5.4 6.8 3.5 3.5 2 1 2 4 4 4 0 PAP2 superfamily TBP PF00352.21 gi|218883586|ref|YP_002427968.1| - 2.8e-55 184.2 0.1 6.1e-27 93.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|218883586|ref|YP_002427968.1| - 6.6e-07 29.4 0.0 0.05 13.7 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF4865 PF16157.5 gi|218883586|ref|YP_002427968.1| - 0.046 13.7 0.0 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4865) Spore_YhaL PF14147.6 gi|218883586|ref|YP_002427968.1| - 0.12 12.1 0.5 0.79 9.5 0.1 2.4 3 0 0 3 3 3 0 Sporulation protein YhaL DUF2070 PF09843.9 gi|218883587|ref|YP_002427969.1| - 5.9e-88 295.6 0.5 6.8e-88 295.4 0.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) ATP_bind_1 PF03029.17 gi|218883589|ref|YP_002427971.1| - 2.3e-44 152.0 0.0 2.6e-44 151.8 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|218883589|ref|YP_002427971.1| - 0.00016 21.5 0.2 1.6 8.5 0.0 3.5 3 1 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|218883589|ref|YP_002427971.1| - 0.00065 19.5 0.0 0.0012 18.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|218883589|ref|YP_002427971.1| - 0.0011 19.2 0.0 0.0015 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|218883589|ref|YP_002427971.1| - 0.0018 17.9 0.0 0.028 14.0 0.0 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|218883589|ref|YP_002427971.1| - 0.0047 16.9 0.0 0.029 14.3 0.0 2.0 1 1 0 1 1 1 1 NTPase AAA_16 PF13191.6 gi|218883589|ref|YP_002427971.1| - 0.0047 17.3 0.0 0.0058 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|218883589|ref|YP_002427971.1| - 0.018 14.7 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|218883589|ref|YP_002427971.1| - 0.045 13.7 1.7 1.7 8.6 0.1 3.6 3 2 2 5 5 5 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|218883589|ref|YP_002427971.1| - 0.05 13.7 0.0 0.48 10.5 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase Gtr1_RagA PF04670.12 gi|218883589|ref|YP_002427971.1| - 0.053 12.9 0.0 1.6 8.0 0.0 2.0 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region AAA_29 PF13555.6 gi|218883589|ref|YP_002427971.1| - 0.054 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|218883589|ref|YP_002427971.1| - 0.059 12.4 0.1 0.099 11.7 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Ras PF00071.22 gi|218883589|ref|YP_002427971.1| - 0.06 12.9 0.0 5.3 6.6 0.0 2.5 3 0 0 3 3 3 0 Ras family NACHT PF05729.12 gi|218883589|ref|YP_002427971.1| - 0.095 12.6 0.1 0.29 11.0 0.0 1.8 3 0 0 3 3 2 0 NACHT domain CLP1_P PF16575.5 gi|218883589|ref|YP_002427971.1| - 0.12 12.1 0.0 0.79 9.5 0.0 1.9 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|218883589|ref|YP_002427971.1| - 0.15 11.0 0.0 0.63 9.0 0.0 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|218883589|ref|YP_002427971.1| - 0.17 12.3 0.0 0.29 11.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|218883589|ref|YP_002427971.1| - 0.18 12.1 0.0 0.28 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|218883589|ref|YP_002427971.1| - 0.2 12.2 0.0 0.36 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain DNA_ligase_A_M PF01068.21 gi|218883590|ref|YP_002427972.1| - 2.4e-61 206.9 0.1 3.4e-61 206.4 0.1 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|218883590|ref|YP_002427972.1| - 2.5e-40 138.6 0.1 5.6e-40 137.5 0.1 1.6 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|218883590|ref|YP_002427972.1| - 1.2e-26 93.2 0.0 4.6e-26 91.3 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|218883590|ref|YP_002427972.1| - 5.9e-05 23.4 0.3 0.00011 22.5 0.3 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|218883590|ref|YP_002427972.1| - 0.0014 18.6 0.3 0.11 12.5 0.0 2.9 3 0 0 3 3 3 1 DNA ligase OB-like domain GGGtGRT PF14057.6 gi|218883590|ref|YP_002427972.1| - 0.087 11.8 0.0 0.47 9.4 0.0 1.9 2 0 0 2 2 2 0 GGGtGRT protein Lon_C PF05362.13 gi|218883591|ref|YP_002427973.1| - 1.3e-07 31.3 0.4 2.6e-07 30.4 0.4 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain UDG PF03167.19 gi|218883592|ref|YP_002427974.1| - 2.9e-46 157.3 0.0 3.8e-46 156.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily GtrA PF04138.14 gi|218883593|ref|YP_002427975.1| - 3.1e-18 66.1 5.1 4.9e-18 65.5 5.1 1.3 1 0 0 1 1 1 1 GtrA-like protein DUF5622 PF18533.1 gi|218883594|ref|YP_002427976.1| - 2.3e-29 101.3 0.4 2.6e-29 101.2 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) DUF553 PF04473.12 gi|218883596|ref|YP_002427978.1| - 4.8e-21 74.9 0.2 4.8e-21 74.9 0.2 2.6 2 1 0 2 2 2 1 Transglutaminase-like domain Transglut_core PF01841.19 gi|218883596|ref|YP_002427978.1| - 0.12 12.8 0.0 0.34 11.4 0.0 1.7 2 0 0 2 2 2 0 Transglutaminase-like superfamily SBP_bac_5 PF00496.22 gi|218883597|ref|YP_002427979.1| - 4.7e-56 190.4 12.5 1.8e-42 145.7 5.3 2.6 2 1 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle DEAD PF00270.29 gi|218883597|ref|YP_002427979.1| - 0.052 13.3 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 DEAD/DEAH box helicase Flp_N PF03930.14 gi|218883597|ref|YP_002427979.1| - 0.056 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Recombinase Flp protein N-terminus HemX PF04375.14 gi|218883597|ref|YP_002427979.1| - 0.072 12.4 0.1 0.13 11.5 0.1 1.3 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase LysR_substrate PF03466.20 gi|218883597|ref|YP_002427979.1| - 0.075 12.4 0.0 0.9 8.9 0.0 2.4 2 1 1 3 3 3 0 LysR substrate binding domain Imm48 PF15574.6 gi|218883597|ref|YP_002427979.1| - 0.15 11.8 0.0 0.43 10.4 0.0 1.8 1 0 0 1 1 1 0 Immunity protein 48 BPD_transp_1 PF00528.22 gi|218883598|ref|YP_002427980.1| - 1.9e-39 135.3 18.4 1.9e-39 135.3 18.4 2.5 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|218883599|ref|YP_002427981.1| - 7.6e-32 110.5 14.7 7.6e-32 110.5 14.7 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|218883599|ref|YP_002427981.1| - 2.5e-05 24.1 0.8 2.5e-05 24.1 0.8 3.5 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C TraQ PF09679.10 gi|218883599|ref|YP_002427981.1| - 0.12 12.3 3.3 1.1 9.3 0.2 3.0 2 0 0 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) ABC_tran PF00005.27 gi|218883600|ref|YP_002427982.1| - 1.5e-25 90.3 0.0 2.2e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|218883600|ref|YP_002427982.1| - 1.4e-21 76.8 0.3 2.5e-21 75.9 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|218883600|ref|YP_002427982.1| - 6.1e-08 32.8 0.3 2.3e-05 24.4 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218883600|ref|YP_002427982.1| - 2.8e-05 23.7 0.0 5.8e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|218883600|ref|YP_002427982.1| - 3.8e-05 24.0 0.4 0.00035 20.9 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|218883600|ref|YP_002427982.1| - 0.0048 16.6 0.1 1.4 8.6 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|218883600|ref|YP_002427982.1| - 0.024 15.1 0.1 1.7 9.1 0.0 2.7 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|218883600|ref|YP_002427982.1| - 0.03 14.1 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|218883600|ref|YP_002427982.1| - 0.035 14.5 0.1 0.054 13.9 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|218883600|ref|YP_002427982.1| - 0.069 13.5 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.17 gi|218883600|ref|YP_002427982.1| - 0.069 13.2 0.1 0.53 10.3 0.0 2.1 2 1 0 2 2 2 0 Helicase HerA, central domain AAA_7 PF12775.7 gi|218883600|ref|YP_002427982.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|218883601|ref|YP_002427983.1| - 2.5e-35 122.0 0.0 3.3e-35 121.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|218883601|ref|YP_002427983.1| - 3.8e-20 72.2 0.1 6.8e-20 71.4 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|218883601|ref|YP_002427983.1| - 1.7e-09 38.0 1.3 2.9e-06 27.3 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|218883601|ref|YP_002427983.1| - 2.5e-05 24.6 0.2 8.8e-05 22.8 0.2 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|218883601|ref|YP_002427983.1| - 0.00016 21.2 0.1 0.00077 19.0 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 gi|218883601|ref|YP_002427983.1| - 0.0055 16.1 0.0 0.015 14.7 0.0 1.7 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|218883601|ref|YP_002427983.1| - 0.024 14.9 0.0 0.41 10.9 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.25 gi|218883601|ref|YP_002427983.1| - 0.025 14.2 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.6 gi|218883601|ref|YP_002427983.1| - 0.029 14.0 0.1 6.2 6.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|218883601|ref|YP_002427983.1| - 0.053 12.9 0.1 2.4 7.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein ATPase PF06745.13 gi|218883601|ref|YP_002427983.1| - 0.1 11.9 0.4 0.92 8.8 0.1 2.1 2 0 0 2 2 2 0 KaiC AAA PF00004.29 gi|218883601|ref|YP_002427983.1| - 0.11 13.0 0.2 0.26 11.7 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|218883601|ref|YP_002427983.1| - 0.13 12.2 0.1 0.22 11.4 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 gi|218883601|ref|YP_002427983.1| - 0.13 12.3 0.2 1.5 8.8 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|218883601|ref|YP_002427983.1| - 0.14 12.6 1.1 0.28 11.6 1.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|218883601|ref|YP_002427983.1| - 0.19 10.4 0.1 1.3 7.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Acid_PPase PF12689.7 gi|218883603|ref|YP_002427985.1| - 0.022 14.6 0.0 0.023 14.5 0.0 1.0 1 0 0 1 1 1 0 Acid Phosphatase MFS_1 PF07690.16 gi|218883604|ref|YP_002427986.1| - 1.6e-33 116.1 32.6 1.6e-33 116.1 32.6 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|218883604|ref|YP_002427986.1| - 2.5e-10 39.8 23.5 5.3e-06 25.6 6.0 2.7 2 1 0 2 2 2 2 Sugar (and other) transporter DUF4131 PF13567.6 gi|218883604|ref|YP_002427986.1| - 8.8 6.0 12.8 2.1 8.0 0.2 3.6 2 2 0 3 3 3 0 Domain of unknown function (DUF4131) DUF131 PF01998.17 gi|218883605|ref|YP_002427987.1| - 3e-12 46.0 13.0 3e-12 46.0 13.0 2.3 1 1 1 2 2 2 1 Protein of unknown function DUF131 SUR7 PF06687.12 gi|218883605|ref|YP_002427987.1| - 0.058 13.0 3.6 0.079 12.6 3.6 1.3 1 1 0 1 1 1 0 SUR7/PalI family HRG PF16954.5 gi|218883605|ref|YP_002427987.1| - 0.26 11.7 11.8 1.7 9.1 3.5 2.2 2 0 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene EI24 PF07264.11 gi|218883605|ref|YP_002427987.1| - 0.57 10.4 7.4 0.65 10.2 7.4 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) zf-LITAF-like PF10601.9 gi|218883605|ref|YP_002427987.1| - 0.81 10.0 3.0 2.2 8.6 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain TMEM192 PF14802.6 gi|218883605|ref|YP_002427987.1| - 1.2 8.2 3.5 5 6.2 0.3 2.0 2 0 0 2 2 2 0 TMEM192 family DUF4064 PF13273.6 gi|218883605|ref|YP_002427987.1| - 3.5 8.0 15.7 2.5 8.4 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) DUF2371 PF10177.9 gi|218883605|ref|YP_002427987.1| - 6.7 6.9 6.4 1.8 8.8 3.6 1.5 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) DUF1218 PF06749.12 gi|218883605|ref|YP_002427987.1| - 9.1 6.9 11.4 6.6 7.3 1.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1218) DUF131 PF01998.17 gi|218883606|ref|YP_002427988.1| - 0.0011 18.6 1.6 0.0011 18.6 1.6 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF131 DUF4199 PF13858.6 gi|218883606|ref|YP_002427988.1| - 0.0083 16.5 3.8 0.0083 16.5 3.8 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF4199) SPC12 PF06645.13 gi|218883606|ref|YP_002427988.1| - 0.035 14.2 1.0 0.035 14.2 1.0 1.7 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF3273 PF11677.8 gi|218883606|ref|YP_002427988.1| - 0.13 11.5 5.3 0.21 10.8 5.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3273) DUF2207 PF09972.9 gi|218883606|ref|YP_002427988.1| - 0.45 9.2 4.9 0.53 9.0 4.9 1.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4282 PF14110.6 gi|218883606|ref|YP_002427988.1| - 0.6 10.9 10.6 0.071 13.9 3.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4282) Pox_A14 PF05767.12 gi|218883606|ref|YP_002427988.1| - 1.3 9.3 8.2 84 3.4 8.2 2.2 1 1 0 1 1 1 0 Poxvirus virion envelope protein A14 Pyr_redox_2 PF07992.14 gi|218883607|ref|YP_002427989.1| - 1.1e-61 208.7 2.7 1.5e-61 208.2 2.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|218883607|ref|YP_002427989.1| - 3.8e-21 75.4 6.1 4.9e-19 68.7 0.5 3.0 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|218883607|ref|YP_002427989.1| - 1.6e-19 70.2 0.1 1e-18 67.6 0.0 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|218883607|ref|YP_002427989.1| - 7.6e-14 51.7 1.7 6e-13 48.7 1.7 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|218883607|ref|YP_002427989.1| - 2.8e-06 26.3 8.4 0.0011 17.8 0.1 3.6 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|218883607|ref|YP_002427989.1| - 7.6e-06 25.4 7.6 0.14 11.4 0.1 3.1 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.24 gi|218883607|ref|YP_002427989.1| - 1.2e-05 25.1 14.7 0.14 11.7 0.0 3.8 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|218883607|ref|YP_002427989.1| - 2.4e-05 23.9 0.3 4.5e-05 23.0 0.3 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|218883607|ref|YP_002427989.1| - 7.6e-05 22.0 0.3 7.6e-05 22.0 0.3 2.7 3 1 1 4 4 4 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|218883607|ref|YP_002427989.1| - 0.00016 20.9 0.8 0.00016 20.9 0.8 3.0 2 1 2 4 4 4 1 FAD binding domain Thi4 PF01946.17 gi|218883607|ref|YP_002427989.1| - 0.00017 20.9 5.0 0.00028 20.2 0.6 2.9 2 1 1 3 3 3 1 Thi4 family NAD_binding_8 PF13450.6 gi|218883607|ref|YP_002427989.1| - 0.0002 21.6 2.2 0.033 14.4 0.3 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|218883607|ref|YP_002427989.1| - 0.00032 20.6 2.5 0.041 13.8 0.1 2.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|218883607|ref|YP_002427989.1| - 0.0035 16.7 1.4 0.0052 16.1 0.1 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|218883607|ref|YP_002427989.1| - 0.0052 17.2 1.0 0.74 10.3 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|218883607|ref|YP_002427989.1| - 0.051 13.6 6.3 0.069 13.1 0.0 3.4 3 1 1 4 4 4 0 FAD-NAD(P)-binding PhoU_div PF01865.16 gi|218883607|ref|YP_002427989.1| - 0.065 12.5 0.1 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF47 Amino_oxidase PF01593.24 gi|218883607|ref|YP_002427989.1| - 0.078 12.2 0.3 0.21 10.9 0.0 1.7 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Spermine_synth PF01564.17 gi|218883607|ref|YP_002427989.1| - 0.11 11.9 0.1 0.21 11.0 0.1 1.4 1 0 0 1 1 1 0 Spermine/spermidine synthase domain 2-Hacid_dh_C PF02826.19 gi|218883607|ref|YP_002427989.1| - 0.14 11.5 0.0 0.3 10.4 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|218883607|ref|YP_002427989.1| - 0.18 12.1 1.6 0.3 11.4 0.1 2.1 2 0 0 2 2 2 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|218883607|ref|YP_002427989.1| - 0.55 9.8 4.1 6.9 6.2 0.3 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|218883607|ref|YP_002427989.1| - 1.7 7.6 5.7 7.5 5.5 0.6 2.9 2 1 1 3 3 3 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|218883607|ref|YP_002427989.1| - 1.8 7.3 7.2 1.5 7.6 0.1 2.8 2 1 1 3 3 3 0 Tryptophan halogenase GDC-P PF02347.16 gi|218883608|ref|YP_002427990.1| - 1.9e-10 40.2 0.0 1.3e-09 37.5 0.0 1.9 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|218883608|ref|YP_002427990.1| - 7e-08 31.8 0.0 1.3e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|218883608|ref|YP_002427990.1| - 3.9e-05 23.0 0.0 7.4e-05 22.1 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|218883608|ref|YP_002427990.1| - 0.0071 15.7 0.1 0.012 14.9 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|218883608|ref|YP_002427990.1| - 0.023 13.4 0.0 0.097 11.4 0.0 1.8 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain GDC-P PF02347.16 gi|218883609|ref|YP_002427991.1| - 1e-112 377.1 0.0 1.3e-112 376.8 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|218883609|ref|YP_002427991.1| - 0.00012 21.2 0.1 0.00028 19.9 0.1 1.7 1 1 0 1 1 1 1 Aminotransferase class-V GCV_T PF01571.21 gi|218883610|ref|YP_002427992.1| - 1.4e-63 214.7 0.1 1.9e-63 214.2 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|218883610|ref|YP_002427992.1| - 1.5e-21 76.1 0.0 3.2e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SHMT PF00464.19 gi|218883611|ref|YP_002427993.1| - 3.9e-68 229.9 0.1 5.1e-68 229.5 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|218883611|ref|YP_002427993.1| - 5.5e-09 35.7 0.0 9.4e-09 34.9 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|218883611|ref|YP_002427993.1| - 3.2e-08 33.1 0.1 1.3e-07 31.2 0.1 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|218883611|ref|YP_002427993.1| - 9.2e-07 28.1 0.1 1.6e-06 27.3 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|218883611|ref|YP_002427993.1| - 0.00017 20.2 0.3 0.0016 17.1 0.0 2.2 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|218883611|ref|YP_002427993.1| - 0.00033 20.1 0.5 0.00063 19.2 0.5 1.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family XTBD PF11952.8 gi|218883611|ref|YP_002427993.1| - 0.06 13.1 0.8 0.44 10.3 0.1 2.4 2 0 0 2 2 2 0 XRN-Two Binding Domain, XTBD GCV_H PF01597.19 gi|218883612|ref|YP_002427994.1| - 5e-40 136.2 0.1 6.4e-40 135.9 0.1 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|218883612|ref|YP_002427994.1| - 0.0031 17.4 0.0 0.0047 16.8 0.0 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|218883612|ref|YP_002427994.1| - 0.046 13.5 0.1 0.046 13.5 0.1 1.7 2 0 0 2 2 2 0 Biotin-requiring enzyme DeoC PF01791.9 gi|218883613|ref|YP_002427995.1| - 1.1e-12 48.1 1.7 1.4e-12 47.7 1.7 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 gi|218883613|ref|YP_002427995.1| - 0.0011 18.2 0.9 0.0011 18.2 0.9 1.6 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase FMN_dh PF01070.18 gi|218883613|ref|YP_002427995.1| - 0.012 14.6 2.4 0.012 14.6 2.4 1.7 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Spermine_synth PF01564.17 gi|218883614|ref|YP_002427996.1| - 2.2e-47 160.9 0.0 2.9e-47 160.5 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|218883614|ref|YP_002427996.1| - 7.8e-06 25.7 0.0 1.7e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_12 PF08242.12 gi|218883614|ref|YP_002427996.1| - 0.0001 23.0 0.0 0.00027 21.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|218883614|ref|YP_002427996.1| - 0.00039 21.1 0.0 0.00077 20.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|218883614|ref|YP_002427996.1| - 0.014 15.2 0.0 0.028 14.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|218883614|ref|YP_002427996.1| - 0.026 13.8 0.0 0.039 13.2 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain MTS PF05175.14 gi|218883614|ref|YP_002427996.1| - 0.094 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF4350 PF14258.6 gi|218883615|ref|YP_002427997.1| - 0.0018 18.6 0.0 0.0069 16.8 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) DUF4129 PF13559.6 gi|218883616|ref|YP_002427998.1| - 0.086 13.1 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) DUF1156 PF06634.12 gi|218883617|ref|YP_002427999.1| - 2.4e-13 50.0 0.5 7.7e-13 48.3 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1156) Cons_hypoth95 PF03602.15 gi|218883617|ref|YP_002427999.1| - 0.00066 19.4 0.0 0.001 18.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 pKID PF02173.17 gi|218883617|ref|YP_002427999.1| - 0.033 13.6 0.8 0.068 12.6 0.8 1.6 1 0 0 1 1 1 0 pKID domain UPF0020 PF01170.18 gi|218883617|ref|YP_002427999.1| - 0.069 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 UPF0126 PF03458.13 gi|218883618|ref|YP_002428000.1| - 0.053 13.4 0.1 0.083 12.8 0.1 1.5 1 1 0 1 1 1 0 UPF0126 domain Fer2_BFD PF04324.15 gi|218883619|ref|YP_002428001.1| - 0.086 13.2 0.0 0.11 12.8 0.0 1.4 1 1 0 1 1 1 0 BFD-like [2Fe-2S] binding domain DsrC PF04358.13 gi|218883619|ref|YP_002428001.1| - 0.11 13.1 0.0 0.11 13.1 0.0 1.0 1 0 0 1 1 1 0 DsrC like protein Methyltransf_23 PF13489.6 gi|218883622|ref|YP_002428004.1| - 2.6e-05 24.1 0.0 5e-05 23.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|218883622|ref|YP_002428004.1| - 0.0028 17.0 0.1 1.3 8.2 0.0 2.1 2 0 0 2 2 2 2 O-methyltransferase domain Methyltransf_11 PF08241.12 gi|218883622|ref|YP_002428004.1| - 0.013 16.1 0.2 4.2 8.1 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|218883622|ref|YP_002428004.1| - 0.23 12.2 0.4 5.5 7.8 0.1 2.2 1 1 1 2 2 2 0 Methyltransferase domain Glycos_transf_2 PF00535.26 gi|218883623|ref|YP_002428005.1| - 1.6e-06 28.1 0.1 6.4e-06 26.1 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|218883623|ref|YP_002428005.1| - 4.8e-06 26.6 0.3 1.6e-05 25.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|218883623|ref|YP_002428005.1| - 0.0022 18.5 0.0 0.011 16.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|218883623|ref|YP_002428005.1| - 0.024 14.1 0.0 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 Aldolase_II PF00596.21 gi|218883625|ref|YP_002428007.1| - 5.6e-47 160.1 0.1 6.5e-47 159.9 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Glyco_trans_1_4 PF13692.6 gi|218883627|ref|YP_002428009.1| - 1.8e-15 57.5 0.1 6.4e-15 55.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|218883627|ref|YP_002428009.1| - 4.4e-15 55.6 0.0 8.7e-15 54.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 CitMHS PF03600.16 gi|218883629|ref|YP_002428011.1| - 1.3e-30 106.6 34.8 7.7e-30 104.1 30.3 2.1 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|218883629|ref|YP_002428011.1| - 1.7e-05 24.1 28.0 0.0016 17.6 9.2 3.3 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region Dr_adhesin PF12393.8 gi|218883629|ref|YP_002428011.1| - 2.8 8.4 6.2 8.3 6.9 1.8 3.7 2 0 0 2 2 2 0 Dr family adhesin RNA_POL_M_15KD PF02150.16 gi|218883630|ref|YP_002428012.1| - 0.11 12.4 0.3 0.17 11.8 0.3 1.2 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Pkinase PF00069.25 gi|218883631|ref|YP_002428013.1| - 0.00029 20.3 0.0 0.00038 19.9 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain tRNA_NucTransf2 PF09249.11 gi|218883632|ref|YP_002428014.1| - 8.2e-39 132.4 0.0 1.5e-38 131.6 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|218883632|ref|YP_002428014.1| - 1.2e-11 44.7 0.0 2.9e-11 43.5 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|218883632|ref|YP_002428014.1| - 0.0003 21.0 0.0 0.00072 19.8 0.0 1.7 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain LigT_PEase PF02834.16 gi|218883633|ref|YP_002428015.1| - 2.6e-29 101.3 0.0 1.7e-15 57.0 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|218883633|ref|YP_002428015.1| - 9.5e-09 35.3 0.0 1.2e-08 35.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|218883633|ref|YP_002428015.1| - 3.1e-08 33.7 0.0 2.7e-07 30.7 0.0 1.9 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|218883633|ref|YP_002428015.1| - 0.038 13.5 0.0 0.15 11.5 0.0 1.6 1 1 1 2 2 2 0 Uncharacterised conserved protein AAA_17 PF13207.6 gi|218883634|ref|YP_002428016.1| - 7.1e-16 58.9 0.1 1.1e-15 58.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|218883634|ref|YP_002428016.1| - 1e-11 45.5 0.1 1.8e-11 44.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|218883634|ref|YP_002428016.1| - 9e-06 25.9 0.3 7.4e-05 22.9 0.3 2.1 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|218883634|ref|YP_002428016.1| - 0.014 15.0 0.0 0.68 9.5 0.0 2.3 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|218883634|ref|YP_002428016.1| - 0.022 15.2 0.3 0.054 13.9 0.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|218883634|ref|YP_002428016.1| - 0.11 12.9 0.0 0.18 12.3 0.0 1.6 1 1 0 1 1 1 0 ABC transporter DUF3987 PF13148.6 gi|218883634|ref|YP_002428016.1| - 0.12 11.4 0.1 0.18 10.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) RNA_binding PF01877.17 gi|218883635|ref|YP_002428017.1| - 3.3e-17 62.9 0.1 4.1e-17 62.6 0.1 1.1 1 0 0 1 1 1 1 RNA binding PCNA_N PF00705.18 gi|218883636|ref|YP_002428018.1| - 2.8e-14 52.9 0.5 8.2e-14 51.4 0.0 1.9 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|218883636|ref|YP_002428018.1| - 2.5e-06 27.1 1.3 2.7e-06 27.0 0.3 1.6 2 0 0 2 2 2 1 Rad9 PCNA_C PF02747.15 gi|218883636|ref|YP_002428018.1| - 1.5e-05 25.1 3.5 0.00036 20.7 0.3 2.5 3 0 0 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|218883636|ref|YP_002428018.1| - 2.7e-05 23.4 1.2 0.12 11.4 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 DUF1622 PF07784.11 gi|218883636|ref|YP_002428018.1| - 0.088 12.7 0.0 1.1 9.2 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1622) PhoH PF02562.16 gi|218883638|ref|YP_002428020.1| - 1e-44 152.5 0.0 1.3e-44 152.1 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein KH_1 PF00013.29 gi|218883638|ref|YP_002428020.1| - 9.9e-07 28.5 0.2 0.0013 18.6 0.1 2.8 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|218883638|ref|YP_002428020.1| - 5.3e-06 26.2 1.7 0.00038 20.2 0.3 2.6 1 1 1 2 2 2 1 KH domain KH_5 PF13184.6 gi|218883638|ref|YP_002428020.1| - 0.0058 16.7 1.2 3.3 7.9 0.0 2.8 3 0 0 3 3 3 2 NusA-like KH domain DEAD PF00270.29 gi|218883638|ref|YP_002428020.1| - 0.0069 16.2 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|218883638|ref|YP_002428020.1| - 0.039 14.5 0.0 0.12 12.9 0.0 1.7 2 0 0 2 2 2 0 ABC transporter IstB_IS21 PF01695.17 gi|218883638|ref|YP_002428020.1| - 0.13 12.0 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|218883638|ref|YP_002428020.1| - 0.14 12.4 0.1 0.56 10.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain Terminase_GpA PF05876.12 gi|218883638|ref|YP_002428020.1| - 0.27 9.8 0.0 0.38 9.2 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Met_10 PF02475.16 gi|218883639|ref|YP_002428021.1| - 3.2e-55 187.0 0.0 4.3e-55 186.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|218883639|ref|YP_002428021.1| - 4.8e-07 29.5 0.0 7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.16 gi|218883639|ref|YP_002428021.1| - 5.2e-07 29.2 0.0 7.2e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|218883639|ref|YP_002428021.1| - 6.8e-05 22.4 0.0 0.0001 21.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|218883639|ref|YP_002428021.1| - 0.00024 20.9 0.0 0.00053 19.8 0.0 1.5 2 0 0 2 2 2 1 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|218883639|ref|YP_002428021.1| - 0.0025 17.8 0.0 0.0045 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|218883639|ref|YP_002428021.1| - 0.022 14.3 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|218883639|ref|YP_002428021.1| - 0.041 13.5 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|218883639|ref|YP_002428021.1| - 0.048 14.4 0.0 0.1 13.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain HhH-GPD PF00730.25 gi|218883640|ref|YP_002428022.1| - 6.6e-17 61.9 0.0 9.7e-17 61.4 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|218883640|ref|YP_002428022.1| - 0.00079 19.7 6.3 0.0016 18.7 6.3 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|218883640|ref|YP_002428022.1| - 0.012 15.5 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif tRNA-synt_2 PF00152.20 gi|218883641|ref|YP_002428023.1| - 8.6e-89 297.7 0.0 1e-88 297.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|218883641|ref|YP_002428023.1| - 1.4e-10 41.0 0.8 2.4e-10 40.3 0.8 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|218883641|ref|YP_002428023.1| - 0.0043 16.6 0.0 0.043 13.3 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) ZipA_C PF04354.13 gi|218883641|ref|YP_002428023.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 ZipA, C-terminal FtsZ-binding domain Acetyltransf_1 PF00583.25 gi|218883642|ref|YP_002428024.1| - 9.2e-16 58.1 0.3 1.3e-15 57.6 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|218883642|ref|YP_002428024.1| - 8.1e-12 45.4 0.3 1.4e-11 44.6 0.3 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|218883642|ref|YP_002428024.1| - 5.7e-10 39.2 0.2 8.6e-10 38.6 0.2 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|218883642|ref|YP_002428024.1| - 7.4e-09 35.5 0.0 1.3e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|218883642|ref|YP_002428024.1| - 1.1e-05 25.5 0.6 2.6e-05 24.3 0.6 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|218883642|ref|YP_002428024.1| - 3.5e-05 24.0 0.2 5.2e-05 23.4 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|218883642|ref|YP_002428024.1| - 5.6e-05 22.9 0.0 8.5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|218883642|ref|YP_002428024.1| - 0.0039 17.9 0.0 0.0048 17.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|218883642|ref|YP_002428024.1| - 0.045 13.3 0.1 0.077 12.6 0.1 1.4 1 1 0 1 1 1 0 GNAT acetyltransferase DFP PF04127.15 gi|218883643|ref|YP_002428025.1| - 6e-53 179.4 0.0 3.2e-52 177.1 0.0 1.9 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|218883643|ref|YP_002428025.1| - 5.8e-34 117.1 0.1 9.6e-34 116.4 0.1 1.3 1 0 0 1 1 1 1 Flavoprotein OrfB_Zn_ribbon PF07282.11 gi|218883644|ref|YP_002428026.1| - 2.1e-19 69.2 0.1 2.7e-19 68.8 0.1 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|218883644|ref|YP_002428026.1| - 0.00012 21.6 1.1 0.31 10.6 0.1 2.2 1 1 1 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|218883644|ref|YP_002428026.1| - 0.0018 18.3 0.3 0.0027 17.7 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF678 PF05077.12 gi|218883644|ref|YP_002428026.1| - 0.002 18.2 0.4 0.0029 17.7 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF678) DUF2318 PF10080.9 gi|218883644|ref|YP_002428026.1| - 0.007 16.5 0.2 0.0096 16.0 0.2 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) DUF4776 PF16003.5 gi|218883644|ref|YP_002428026.1| - 0.017 14.2 0.6 0.022 13.8 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) zinc_ribbon_2 PF13240.6 gi|218883644|ref|YP_002428026.1| - 0.027 14.2 0.1 7.6 6.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|218883644|ref|YP_002428026.1| - 0.029 13.8 1.0 0.091 12.2 1.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|218883644|ref|YP_002428026.1| - 0.065 13.2 0.3 0.093 12.7 0.3 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2614 PF11023.8 gi|218883644|ref|YP_002428026.1| - 0.08 13.0 0.1 0.099 12.7 0.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain Baculo_ME53 PF06061.11 gi|218883644|ref|YP_002428026.1| - 0.082 12.1 0.1 0.095 11.9 0.1 1.1 1 0 0 1 1 1 0 Baculoviridae ME53 AAA_18 PF13238.6 gi|218883646|ref|YP_002428028.1| - 0.11 13.0 0.0 0.23 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain PPS_PS PF02006.16 gi|218883647|ref|YP_002428029.1| - 3.1e-80 267.9 2.2 3.8e-80 267.6 2.2 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase GHMP_kinases_N PF00288.26 gi|218883648|ref|YP_002428030.1| - 0.038 14.2 1.3 0.074 13.3 1.3 1.5 1 0 0 1 1 1 0 GHMP kinases N terminal domain AcMNPV_Ac109 PF05054.12 gi|218883648|ref|YP_002428030.1| - 0.074 12.1 0.1 0.14 11.2 0.1 1.4 1 1 0 1 1 1 0 Autographa californica nuclear polyhedrosis virus (AcMNPV) protein PhosphMutase PF10143.9 gi|218883649|ref|YP_002428031.1| - 3e-49 167.2 0.0 4.1e-49 166.7 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|218883649|ref|YP_002428031.1| - 3.6e-30 105.1 0.0 4.6e-30 104.8 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|218883649|ref|YP_002428031.1| - 0.0029 17.3 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|218883649|ref|YP_002428031.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 PglZ domain ABC_tran PF00005.27 gi|218883650|ref|YP_002428032.1| - 8.8e-27 94.3 0.0 1.4e-26 93.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883650|ref|YP_002428032.1| - 1.6e-16 61.0 0.3 4.6e-09 36.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218883650|ref|YP_002428032.1| - 5.3e-06 26.0 0.1 0.014 14.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|218883650|ref|YP_002428032.1| - 0.00066 19.5 0.1 0.0075 16.0 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|218883650|ref|YP_002428032.1| - 0.00091 19.8 1.0 0.0022 18.5 1.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|218883650|ref|YP_002428032.1| - 0.0011 18.6 0.1 0.0023 17.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|218883650|ref|YP_002428032.1| - 0.019 15.4 0.1 0.033 14.6 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|218883650|ref|YP_002428032.1| - 0.021 15.1 0.1 0.087 13.1 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|218883650|ref|YP_002428032.1| - 0.028 14.2 0.0 0.072 12.8 0.0 1.6 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|218883650|ref|YP_002428032.1| - 0.038 14.4 0.0 0.051 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|218883650|ref|YP_002428032.1| - 0.039 13.6 0.1 0.078 12.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|218883650|ref|YP_002428032.1| - 0.044 12.5 0.1 0.97 8.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|218883650|ref|YP_002428032.1| - 0.045 13.8 0.1 1.6 8.8 0.0 2.2 1 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|218883650|ref|YP_002428032.1| - 0.069 13.0 0.1 0.1 12.5 0.1 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|218883650|ref|YP_002428032.1| - 0.09 12.7 0.0 0.26 11.2 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.6 gi|218883650|ref|YP_002428032.1| - 0.14 12.5 0.2 0.25 11.7 0.2 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|218883650|ref|YP_002428032.1| - 0.14 12.1 0.1 0.36 10.7 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain ABC2_membrane_3 PF12698.7 gi|218883651|ref|YP_002428033.1| - 4.2e-19 68.8 36.7 5.2e-19 68.6 36.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|218883651|ref|YP_002428033.1| - 3.8e-11 42.8 38.3 1.2e-10 41.2 38.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|218883651|ref|YP_002428033.1| - 6.5e-05 22.5 18.2 6.5e-05 22.5 18.2 3.6 2 1 1 3 3 3 2 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|218883651|ref|YP_002428033.1| - 0.00019 21.4 10.0 0.00019 21.4 10.0 2.8 3 0 0 3 3 3 1 ABC-2 family transporter protein Pantoate_transf PF02548.15 gi|218883652|ref|YP_002428034.1| - 4.7e-108 360.5 0.5 5.3e-108 360.3 0.5 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|218883652|ref|YP_002428034.1| - 7.6e-07 28.8 2.9 0.0099 15.4 0.2 3.0 2 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase Amdase PF17645.1 gi|218883652|ref|YP_002428034.1| - 0.15 11.6 0.7 1.9 8.0 0.1 2.3 1 1 1 2 2 2 0 Arylmalonate decarboxylase ApbA_C PF08546.11 gi|218883653|ref|YP_002428035.1| - 2.3e-24 85.9 0.0 7e-24 84.4 0.0 1.9 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|218883653|ref|YP_002428035.1| - 1.2e-21 77.0 0.0 1.8e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|218883653|ref|YP_002428035.1| - 0.00038 20.1 1.2 0.00072 19.2 1.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase F420_oxidored PF03807.17 gi|218883653|ref|YP_002428035.1| - 0.0019 18.7 0.0 0.0038 17.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|218883653|ref|YP_002428035.1| - 0.0053 16.0 0.0 0.0075 15.5 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|218883653|ref|YP_002428035.1| - 0.025 14.8 0.4 0.064 13.5 0.4 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 gi|218883653|ref|YP_002428035.1| - 0.031 14.2 0.0 0.1 12.5 0.0 1.9 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiP_synth PF10120.9 gi|218883654|ref|YP_002428036.1| - 6.3e-41 139.7 0.0 8.8e-41 139.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_23 PF13384.6 gi|218883654|ref|YP_002428036.1| - 0.0006 19.5 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.6 gi|218883654|ref|YP_002428036.1| - 0.0045 16.9 0.0 0.0084 16.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|218883654|ref|YP_002428036.1| - 0.06 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|218883654|ref|YP_002428036.1| - 0.067 12.8 0.3 0.58 9.8 0.1 2.3 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|218883654|ref|YP_002428036.1| - 0.084 12.9 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix ABC_tran PF00005.27 gi|218883657|ref|YP_002428039.1| - 1.4e-26 93.6 0.0 2.1e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883657|ref|YP_002428039.1| - 2.9e-13 50.3 1.2 8.2e-06 25.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|218883657|ref|YP_002428039.1| - 0.00073 20.1 0.2 0.0011 19.5 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|218883657|ref|YP_002428039.1| - 0.0032 17.2 0.1 0.0067 16.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|218883657|ref|YP_002428039.1| - 0.012 15.3 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|218883657|ref|YP_002428039.1| - 0.013 14.1 0.1 0.81 8.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|218883657|ref|YP_002428039.1| - 0.014 14.9 0.1 1.3 8.5 0.1 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|218883657|ref|YP_002428039.1| - 0.019 14.7 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|218883657|ref|YP_002428039.1| - 0.023 14.3 0.0 0.065 12.9 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|218883657|ref|YP_002428039.1| - 0.048 14.1 0.0 0.085 13.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|218883657|ref|YP_002428039.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|218883657|ref|YP_002428039.1| - 0.2 10.9 0.0 0.47 9.7 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin ABC2_membrane_3 PF12698.7 gi|218883658|ref|YP_002428040.1| - 5e-23 81.8 23.5 6.2e-23 81.5 23.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|218883658|ref|YP_002428040.1| - 2.1e-15 56.8 19.7 2.6e-15 56.5 19.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|218883658|ref|YP_002428040.1| - 0.0019 18.2 12.6 0.0019 18.2 12.6 3.2 3 0 0 3 3 3 1 ABC-2 family transporter protein UPF0180 PF03698.13 gi|218883658|ref|YP_002428040.1| - 0.091 12.9 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) HTH_24 PF13412.6 gi|218883659|ref|YP_002428041.1| - 7.9e-09 35.0 0.3 1.8e-08 33.8 0.0 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|218883659|ref|YP_002428041.1| - 5.4e-08 32.7 2.3 5.7e-06 26.2 0.0 3.1 3 0 0 3 3 3 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|218883659|ref|YP_002428041.1| - 8.5e-08 32.0 0.5 2.2e-07 30.7 0.1 1.9 2 0 0 2 2 1 1 HTH domain MarR_2 PF12802.7 gi|218883659|ref|YP_002428041.1| - 1.3e-07 31.4 0.0 2.5e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|218883659|ref|YP_002428041.1| - 4.9e-07 30.0 0.0 9.5e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|218883659|ref|YP_002428041.1| - 7.2e-07 29.0 0.0 1.6e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|218883659|ref|YP_002428041.1| - 2.1e-06 27.6 0.1 5.7e-06 26.2 0.0 1.7 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|218883659|ref|YP_002428041.1| - 3.1e-06 26.8 0.0 6.4e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 gi|218883659|ref|YP_002428041.1| - 3.3e-06 26.9 0.0 7.4e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|218883659|ref|YP_002428041.1| - 1.3e-05 25.2 0.0 2.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|218883659|ref|YP_002428041.1| - 1.5e-05 24.8 0.0 3.6e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|218883659|ref|YP_002428041.1| - 1.6e-05 24.8 0.0 2.9e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_DeoR PF08220.12 gi|218883659|ref|YP_002428041.1| - 1.8e-05 24.4 0.0 4.4e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|218883659|ref|YP_002428041.1| - 2.2e-05 24.2 0.1 7.7e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|218883659|ref|YP_002428041.1| - 4e-05 23.7 0.0 6.7e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|218883659|ref|YP_002428041.1| - 4.1e-05 23.1 0.0 9.6e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.16 gi|218883659|ref|YP_002428041.1| - 4.6e-05 23.1 0.0 0.00012 21.8 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_10 PF04967.12 gi|218883659|ref|YP_002428041.1| - 4.6e-05 23.1 0.0 0.00011 21.9 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain DUF505 PF04458.12 gi|218883659|ref|YP_002428041.1| - 5.3e-05 21.8 0.1 5.7e-05 21.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_Mga PF08280.11 gi|218883659|ref|YP_002428041.1| - 7.9e-05 22.6 0.2 0.00034 20.6 0.0 2.0 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.19 gi|218883659|ref|YP_002428041.1| - 0.00012 22.2 0.1 0.00029 21.0 0.0 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|218883659|ref|YP_002428041.1| - 0.00021 20.9 0.0 0.00039 20.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|218883659|ref|YP_002428041.1| - 0.0003 20.8 0.0 0.00057 19.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_IclR PF09339.10 gi|218883659|ref|YP_002428041.1| - 0.0005 19.8 0.0 0.00083 19.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_ECF PF07638.11 gi|218883659|ref|YP_002428041.1| - 0.00098 19.1 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 ECF sigma factor RPA_C PF08784.11 gi|218883659|ref|YP_002428041.1| - 0.00099 19.7 0.0 0.0016 19.0 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_7 PF02796.15 gi|218883659|ref|YP_002428041.1| - 0.0011 19.0 0.0 0.002 18.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase GerE PF00196.19 gi|218883659|ref|YP_002428041.1| - 0.0013 18.3 0.0 0.0022 17.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family TnsD PF15978.5 gi|218883659|ref|YP_002428041.1| - 0.0013 17.8 0.0 0.0019 17.2 0.0 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D MerR PF00376.23 gi|218883659|ref|YP_002428041.1| - 0.0013 18.5 0.4 0.011 15.5 0.4 2.2 1 1 0 1 1 1 1 MerR family regulatory protein B-block_TFIIIC PF04182.12 gi|218883659|ref|YP_002428041.1| - 0.0054 16.9 0.0 0.0093 16.1 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DprA_WH PF17782.1 gi|218883659|ref|YP_002428041.1| - 0.0061 16.6 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 DprA winged helix domain HTH_19 PF12844.7 gi|218883659|ref|YP_002428041.1| - 0.0063 16.5 0.7 0.025 14.6 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|218883659|ref|YP_002428041.1| - 0.0064 17.0 0.2 0.019 15.5 0.0 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain MerR_1 PF13411.6 gi|218883659|ref|YP_002428041.1| - 0.0069 16.5 0.0 0.018 15.1 0.0 1.7 1 0 0 1 1 1 1 MerR HTH family regulatory protein RP-C PF03428.13 gi|218883659|ref|YP_002428041.1| - 0.0092 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_40 PF14493.6 gi|218883659|ref|YP_002428041.1| - 0.0097 16.3 0.1 0.028 14.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_CodY PF08222.11 gi|218883659|ref|YP_002428041.1| - 0.011 15.3 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain Sigma70_r4 PF04545.16 gi|218883659|ref|YP_002428041.1| - 0.011 15.2 0.1 0.024 14.2 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|218883659|ref|YP_002428041.1| - 0.012 15.4 0.1 0.021 14.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 gi|218883659|ref|YP_002428041.1| - 0.012 15.9 0.0 0.034 14.5 0.0 1.8 1 0 0 1 1 1 0 FaeA-like protein Ribosomal_S25 PF03297.15 gi|218883659|ref|YP_002428041.1| - 0.013 15.7 0.1 0.15 12.2 0.0 2.3 2 1 0 2 2 2 0 S25 ribosomal protein HemN_C PF06969.16 gi|218883659|ref|YP_002428041.1| - 0.014 15.4 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_Tnp_1 PF01527.20 gi|218883659|ref|YP_002428041.1| - 0.016 15.5 0.0 0.03 14.6 0.0 1.5 1 0 0 1 1 1 0 Transposase Mga PF05043.13 gi|218883659|ref|YP_002428041.1| - 0.019 15.6 0.0 0.05 14.2 0.0 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|218883659|ref|YP_002428041.1| - 0.024 14.1 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FeoC PF09012.10 gi|218883659|ref|YP_002428041.1| - 0.025 14.6 0.0 0.056 13.5 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator SgrR_N PF12793.7 gi|218883659|ref|YP_002428041.1| - 0.029 14.6 0.0 0.11 12.8 0.0 1.9 2 0 0 2 2 1 0 Sugar transport-related sRNA regulator N-term ANAPC2 PF08672.11 gi|218883659|ref|YP_002428041.1| - 0.036 14.6 0.3 0.88 10.1 0.0 2.7 3 0 0 3 3 2 0 Anaphase promoting complex (APC) subunit 2 HTH_22 PF13309.6 gi|218883659|ref|YP_002428041.1| - 0.045 13.8 0.0 0.19 11.8 0.0 2.1 1 1 0 1 1 1 0 HTH domain HxlR PF01638.17 gi|218883659|ref|YP_002428041.1| - 0.054 13.3 0.2 0.16 11.8 0.1 1.9 2 1 0 2 2 1 0 HxlR-like helix-turn-helix RasGAP_C PF03836.15 gi|218883659|ref|YP_002428041.1| - 0.057 13.6 2.6 1.2 9.2 0.0 2.7 2 1 0 2 2 2 0 RasGAP C-terminus AbiEi_4 PF13338.6 gi|218883659|ref|YP_002428041.1| - 0.062 13.5 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_Tnp_Tc3_1 PF11427.8 gi|218883659|ref|YP_002428041.1| - 0.066 13.1 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Tc3 transposase HTH_psq PF05225.16 gi|218883659|ref|YP_002428041.1| - 0.066 13.0 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Penicillinase_R PF03965.16 gi|218883659|ref|YP_002428041.1| - 0.067 13.5 0.0 0.26 11.6 0.0 1.9 2 0 0 2 2 2 0 Penicillinase repressor HTH_26 PF13443.6 gi|218883659|ref|YP_002428041.1| - 0.069 13.6 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain IF2_N PF04760.15 gi|218883659|ref|YP_002428041.1| - 0.077 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Sigma70_r3 PF04539.16 gi|218883659|ref|YP_002428041.1| - 0.082 13.0 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 EAP30 PF04157.16 gi|218883659|ref|YP_002428041.1| - 0.19 11.0 0.0 0.3 10.3 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family EGF_Tenascin PF18720.1 gi|218883660|ref|YP_002428042.1| - 0.1 12.7 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 Tenascin EGF domain Glyco_hydro_57 PF03065.15 gi|218883661|ref|YP_002428043.1| - 3.8e-66 223.5 0.2 5.6e-66 223.0 0.2 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1925 PF09094.11 gi|218883662|ref|YP_002428044.1| - 5.9e-33 113.0 1.0 1e-32 112.2 1.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_57 PF03065.15 gi|218883662|ref|YP_002428044.1| - 1.6e-32 113.0 0.0 3e-32 112.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1926 PF09095.11 gi|218883662|ref|YP_002428044.1| - 6.8e-23 81.7 0.0 1.3e-10 41.4 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF1926) Glycos_transf_1 PF00534.20 gi|218883663|ref|YP_002428045.1| - 1.3e-23 83.4 0.0 2.5e-23 82.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|218883663|ref|YP_002428045.1| - 1.4e-21 77.3 0.0 2.5e-21 76.5 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.6 gi|218883663|ref|YP_002428045.1| - 8e-17 61.9 0.0 1.8e-16 60.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|218883663|ref|YP_002428045.1| - 6.2e-13 49.1 0.0 1.7e-12 47.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|218883663|ref|YP_002428045.1| - 9.5e-09 35.9 0.0 2.8e-08 34.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|218883663|ref|YP_002428045.1| - 0.00034 20.9 0.0 0.00072 19.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|218883663|ref|YP_002428045.1| - 0.12 12.4 0.0 9.2 6.3 0.0 3.1 3 0 0 3 3 3 0 Glycosyl transferase 4-like Glyco_hydro_57 PF03065.15 gi|218883664|ref|YP_002428046.1| - 2.5e-30 105.8 5.4 2.4e-28 99.3 0.0 2.6 2 1 1 3 3 3 2 Glycosyl hydrolase family 57 DHHA1 PF02272.19 gi|218883665|ref|YP_002428047.1| - 0.032 14.7 0.1 0.13 12.6 0.1 2.0 1 1 0 1 1 1 0 DHHA1 domain Thioredoxin_7 PF13899.6 gi|218883666|ref|YP_002428048.1| - 2e-14 53.5 0.0 4.9e-14 52.3 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|218883666|ref|YP_002428048.1| - 0.0059 17.0 0.0 0.055 13.9 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Glutaredoxin PF00462.24 gi|218883666|ref|YP_002428048.1| - 0.0059 16.8 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 Glutaredoxin Pput2613-deam PF14427.6 gi|218883666|ref|YP_002428048.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Pput_2613-like deaminase SfLAP PF11139.8 gi|218883667|ref|YP_002428049.1| - 0.00023 20.6 7.3 0.0036 16.8 7.2 2.0 1 1 0 1 1 1 1 Sap, sulfolipid-1-addressing protein Tmemb_18A PF09771.9 gi|218883667|ref|YP_002428049.1| - 0.054 13.9 3.0 2 8.8 0.3 2.2 2 0 0 2 2 2 0 Transmembrane protein 188 Ribosomal_S5_C PF03719.15 gi|218883668|ref|YP_002428050.1| - 0.045 13.2 0.0 0.049 13.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein S5, C-terminal domain Peptidase_M48 PF01435.18 gi|218883669|ref|YP_002428051.1| - 9.5e-42 143.0 0.0 3.7e-41 141.1 0.0 2.0 1 1 0 1 1 1 1 Peptidase family M48 Borrelia_P13 PF05628.12 gi|218883669|ref|YP_002428051.1| - 0.01 15.8 8.6 0.045 13.7 0.5 3.0 2 1 1 3 3 3 0 Borrelia membrane protein P13 SUR7 PF06687.12 gi|218883669|ref|YP_002428051.1| - 0.16 11.6 0.1 0.16 11.6 0.1 2.6 2 1 0 2 2 2 0 SUR7/PalI family ATG27 PF09451.10 gi|218883669|ref|YP_002428051.1| - 0.82 9.5 2.4 4 7.2 0.3 2.2 2 0 0 2 2 2 0 Autophagy-related protein 27 DUF3938 PF13074.6 gi|218883669|ref|YP_002428051.1| - 1.7 8.9 12.0 0.55 10.5 4.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3938) Peptidase_M56 PF05569.11 gi|218883669|ref|YP_002428051.1| - 4.8 6.3 11.7 0.079 12.1 2.1 2.7 3 1 1 4 4 4 0 BlaR1 peptidase M56 Lon_C PF05362.13 gi|218883670|ref|YP_002428052.1| - 5.9e-12 45.6 0.0 1e-11 44.8 0.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain Metallophos_2 PF12850.7 gi|218883671|ref|YP_002428053.1| - 2e-07 31.4 0.1 3.1e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|218883671|ref|YP_002428053.1| - 9e-07 29.6 1.1 5.7e-06 27.0 0.0 1.9 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase TPP_enzyme_C PF02775.21 gi|218883674|ref|YP_002428056.1| - 1.5e-19 70.3 0.0 2.8e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|218883674|ref|YP_002428056.1| - 4.3e-14 52.8 0.0 8.4e-14 51.9 0.0 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|218883674|ref|YP_002428056.1| - 1.1e-11 44.1 12.2 2.4e-07 30.3 2.9 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|218883674|ref|YP_002428056.1| - 1.5e-09 37.5 12.6 2.9e-05 23.9 2.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|218883674|ref|YP_002428056.1| - 1.4e-07 32.0 7.5 0.00072 20.1 1.0 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|218883674|ref|YP_002428056.1| - 4.9e-07 29.5 17.5 0.00033 20.6 2.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|218883674|ref|YP_002428056.1| - 1e-06 28.8 6.3 2.9e-06 27.3 6.3 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|218883674|ref|YP_002428056.1| - 1.1e-06 28.6 11.3 2.9e-06 27.3 11.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|218883674|ref|YP_002428056.1| - 4e-05 23.6 11.2 0.0062 16.6 11.8 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|218883674|ref|YP_002428056.1| - 0.00045 21.1 7.3 0.0017 19.3 1.0 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|218883674|ref|YP_002428056.1| - 0.0015 18.9 17.9 0.0068 16.8 2.3 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|218883674|ref|YP_002428056.1| - 0.0048 17.3 8.0 0.28 11.7 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Transket_pyr PF02779.24 gi|218883674|ref|YP_002428056.1| - 0.011 15.4 0.1 0.04 13.6 0.1 1.8 2 1 0 2 2 2 0 Transketolase, pyrimidine binding domain TPP_enzyme_N PF02776.18 gi|218883674|ref|YP_002428056.1| - 0.042 13.5 0.7 0.11 12.1 0.1 2.0 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_3 PF12798.7 gi|218883674|ref|YP_002428056.1| - 0.16 13.0 17.3 0.067 14.2 4.5 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|218883674|ref|YP_002428056.1| - 0.31 11.6 11.9 2.8 8.6 3.4 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|218883674|ref|YP_002428056.1| - 0.84 10.5 4.4 6.1 7.8 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|218883674|ref|YP_002428056.1| - 0.87 10.2 12.8 0.95 10.1 2.7 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|218883674|ref|YP_002428056.1| - 4.7 8.0 11.1 10 7.0 1.5 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain POR PF01558.18 gi|218883675|ref|YP_002428057.1| - 7.4e-32 110.8 0.0 8.6e-32 110.6 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF1264 PF06884.11 gi|218883677|ref|YP_002428059.1| - 0.07 12.7 0.0 0.13 11.9 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1264) Q_salvage PF10343.9 gi|218883678|ref|YP_002428060.1| - 0.0094 15.6 0.0 0.12 11.9 0.0 2.1 1 1 0 1 1 1 1 Potential Queuosine, Q, salvage protein family AGOG PF09171.10 gi|218883678|ref|YP_002428060.1| - 0.012 14.9 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 N-glycosylase/DNA lyase Ribosomal_S16 PF00886.19 gi|218883678|ref|YP_002428060.1| - 0.058 13.5 0.0 2.4 8.3 0.0 2.5 2 0 0 2 2 2 0 Ribosomal protein S16 SMC_Nse1 PF07574.13 gi|218883679|ref|YP_002428061.1| - 0.016 15.1 0.0 0.023 14.6 0.0 1.3 1 1 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex ANAPC2 PF08672.11 gi|218883679|ref|YP_002428061.1| - 0.041 14.4 0.0 0.083 13.4 0.0 1.5 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 DUF5442 PF17514.2 gi|218883679|ref|YP_002428061.1| - 0.078 13.2 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5442) Cons_hypoth95 PF03602.15 gi|218883680|ref|YP_002428062.1| - 0.00073 19.2 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|218883680|ref|YP_002428062.1| - 0.0027 18.4 0.0 0.0054 17.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|218883680|ref|YP_002428062.1| - 0.0087 15.4 0.2 1.3 8.3 0.0 2.9 3 0 0 3 3 3 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|218883680|ref|YP_002428062.1| - 0.024 15.3 0.0 0.12 13.0 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|218883680|ref|YP_002428062.1| - 0.032 13.6 0.0 0.06 12.7 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_30 PF05430.11 gi|218883680|ref|YP_002428062.1| - 0.041 13.8 0.0 0.085 12.7 0.0 1.6 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase NikR_C PF08753.11 gi|218883681|ref|YP_002428063.1| - 0.16 12.2 0.9 0.29 11.3 0.0 1.8 2 1 0 2 2 2 0 NikR C terminal nickel binding domain ABC-3 PF00950.17 gi|218883682|ref|YP_002428064.1| - 1.3e-21 77.3 29.8 1.3e-21 77.3 29.8 1.4 1 1 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|218883682|ref|YP_002428064.1| - 0.061 12.3 37.1 0.053 12.5 34.7 2.0 1 1 0 1 1 1 0 FecCD transport family DAG1 PF05454.11 gi|218883682|ref|YP_002428064.1| - 0.37 10.1 0.8 0.56 9.5 0.8 1.2 1 0 0 1 1 1 0 Dystroglycan (Dystrophin-associated glycoprotein 1) ZnuA PF01297.17 gi|218883683|ref|YP_002428065.1| - 8.4e-20 71.3 0.0 9.8e-20 71.0 0.0 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|218883684|ref|YP_002428066.1| - 5.3e-23 82.1 0.0 7.1e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883684|ref|YP_002428066.1| - 1.6e-09 38.0 1.8 0.00057 19.8 0.4 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218883684|ref|YP_002428066.1| - 4.7e-05 22.9 0.0 0.2 11.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|218883684|ref|YP_002428066.1| - 0.001 19.5 0.0 0.0016 18.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|218883684|ref|YP_002428066.1| - 0.0041 17.6 0.4 0.0068 16.9 0.4 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|218883684|ref|YP_002428066.1| - 0.0095 15.2 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|218883684|ref|YP_002428066.1| - 0.022 15.1 0.2 0.071 13.4 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|218883684|ref|YP_002428066.1| - 0.04 13.7 0.1 0.076 12.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|218883684|ref|YP_002428066.1| - 0.067 12.2 0.1 0.097 11.7 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.19 gi|218883684|ref|YP_002428066.1| - 0.11 12.1 0.2 0.19 11.3 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|218883684|ref|YP_002428066.1| - 0.14 12.3 0.0 0.23 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|218883684|ref|YP_002428066.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|218883684|ref|YP_002428066.1| - 0.2 11.3 0.1 0.34 10.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|218883684|ref|YP_002428066.1| - 0.23 11.1 0.2 37 4.0 0.0 2.9 3 1 0 3 3 3 0 IstB-like ATP binding protein Imm3 PF14425.6 gi|218883685|ref|YP_002428067.1| - 0.16 12.0 0.5 0.33 11.0 0.5 1.5 1 0 0 1 1 1 0 Immunity protein Imm3 Ald_Xan_dh_C2 PF02738.18 gi|218883686|ref|YP_002428068.1| - 8.6e-177 588.9 0.0 1.1e-176 588.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|218883686|ref|YP_002428068.1| - 7.7e-24 84.2 0.0 1.5e-23 83.3 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 gi|218883687|ref|YP_002428069.1| - 8.5e-26 89.8 0.1 1.4e-25 89.1 0.1 1.3 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|218883687|ref|YP_002428069.1| - 4.4e-07 29.7 0.2 4.4e-07 29.7 0.2 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|218883687|ref|YP_002428069.1| - 4e-05 23.6 0.7 5.8e-05 23.1 0.2 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|218883687|ref|YP_002428069.1| - 0.0057 16.7 0.3 0.058 13.4 0.3 2.3 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 gi|218883688|ref|YP_002428070.1| - 1.7e-26 92.9 0.0 2.7e-26 92.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|218883688|ref|YP_002428070.1| - 2.6e-13 50.0 0.0 5.6e-13 49.0 0.0 1.5 2 0 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain PALP PF00291.25 gi|218883689|ref|YP_002428071.1| - 4.1e-69 233.2 0.0 4.7e-69 233.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Nre_N PF04894.12 gi|218883690|ref|YP_002428072.1| - 9.6e-104 347.0 0.0 1.2e-103 346.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|218883690|ref|YP_002428072.1| - 1.2e-34 118.5 0.0 1.8e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DUF913 PF06025.12 gi|218883690|ref|YP_002428072.1| - 0.0051 15.8 0.0 0.007 15.4 0.0 1.1 1 0 0 1 1 1 1 Domain of Unknown Function (DUF913) Radical_SAM PF04055.21 gi|218883691|ref|YP_002428073.1| - 3.7e-10 40.4 0.1 3.1e-09 37.4 0.0 1.9 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|218883691|ref|YP_002428073.1| - 0.0019 18.0 6.8 0.097 12.4 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) DUF2192 PF09958.9 gi|218883692|ref|YP_002428074.1| - 1.5e-88 296.2 0.6 1.7e-88 296.0 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) 7TM_GPCR_Srsx PF10320.9 gi|218883692|ref|YP_002428074.1| - 0.21 11.0 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srsx HTH_3 PF01381.22 gi|218883695|ref|YP_002428077.1| - 7.6e-05 22.7 0.7 0.00012 22.0 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|218883695|ref|YP_002428077.1| - 0.00013 21.3 0.0 0.00021 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|218883695|ref|YP_002428077.1| - 0.00034 20.7 0.2 0.00059 19.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.8 gi|218883695|ref|YP_002428077.1| - 0.0059 16.4 0.5 0.2 11.5 0.1 2.3 2 0 0 2 2 2 1 Tc3 transposase Glyco_hydro_77 PF02446.17 gi|218883695|ref|YP_002428077.1| - 0.0074 15.2 0.0 0.0088 14.9 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase HTH_24 PF13412.6 gi|218883695|ref|YP_002428077.1| - 0.0079 15.7 0.1 0.017 14.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|218883695|ref|YP_002428077.1| - 0.0097 15.7 0.3 0.018 14.8 0.3 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.12 gi|218883695|ref|YP_002428077.1| - 0.017 14.9 0.6 0.16 11.8 0.0 2.6 4 0 0 4 4 4 0 HTH DNA binding domain HTH_19 PF12844.7 gi|218883695|ref|YP_002428077.1| - 0.02 14.9 0.0 0.044 13.8 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain NUMOD1 PF07453.13 gi|218883695|ref|YP_002428077.1| - 0.021 15.1 1.5 0.68 10.3 0.0 3.0 3 0 0 3 3 3 0 NUMOD1 domain HTH_11 PF08279.12 gi|218883695|ref|YP_002428077.1| - 0.031 14.2 0.3 0.059 13.3 0.3 1.5 1 0 0 1 1 1 0 HTH domain HTH_29 PF13551.6 gi|218883695|ref|YP_002428077.1| - 0.032 14.3 0.1 0.058 13.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix MerR PF00376.23 gi|218883695|ref|YP_002428077.1| - 0.034 13.9 0.1 0.066 13.0 0.1 1.4 1 0 0 1 1 1 0 MerR family regulatory protein HTH_31 PF13560.6 gi|218883695|ref|YP_002428077.1| - 0.035 14.5 0.1 0.3 11.5 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|218883695|ref|YP_002428077.1| - 0.04 13.8 0.1 0.098 12.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_Tnp_IS630 PF01710.16 gi|218883695|ref|YP_002428077.1| - 0.059 13.4 0.0 0.077 13.0 0.0 1.3 1 1 0 1 1 1 0 Transposase EntA_Immun PF08951.10 gi|218883695|ref|YP_002428077.1| - 0.066 13.6 2.1 0.086 13.2 1.0 1.8 2 0 0 2 2 2 0 Enterocin A Immunity HTH_26 PF13443.6 gi|218883695|ref|YP_002428077.1| - 0.069 13.6 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_Tnp_1 PF01527.20 gi|218883695|ref|YP_002428077.1| - 0.082 13.2 0.0 0.18 12.1 0.0 1.5 1 1 0 1 1 1 0 Transposase Taeniidae_ag PF05596.11 gi|218883695|ref|YP_002428077.1| - 0.12 12.3 0.1 0.7 9.9 0.1 2.0 2 0 0 2 2 2 0 Taeniidae antigen Adeno_knob PF00541.17 gi|218883696|ref|YP_002428078.1| - 0.061 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Adenoviral fibre protein (knob domain) Aminotran_1_2 PF00155.21 gi|218883697|ref|YP_002428079.1| - 5.3e-35 121.2 0.0 5.9e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|218883697|ref|YP_002428079.1| - 1.8e-07 30.3 0.0 3.1e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|218883697|ref|YP_002428079.1| - 0.0019 17.5 0.0 0.0028 17.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|218883697|ref|YP_002428079.1| - 0.006 15.9 0.0 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Radical_SAM PF04055.21 gi|218883698|ref|YP_002428080.1| - 1e-09 39.0 0.0 8.8e-09 36.0 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|218883698|ref|YP_002428080.1| - 0.043 13.8 0.0 0.28 11.2 0.0 2.1 2 0 0 2 2 2 0 B12 binding domain HMG-CoA_red PF00368.18 gi|218883699|ref|YP_002428081.1| - 0.27 10.2 0.0 0.35 9.8 0.0 1.1 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A reductase DUF35_N PF12172.8 gi|218883700|ref|YP_002428082.1| - 1.5e-10 40.7 1.9 2.2e-10 40.2 1.9 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|218883700|ref|YP_002428082.1| - 7.7e-09 35.4 0.0 1.1e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated Methyltransf_13 PF08421.11 gi|218883700|ref|YP_002428082.1| - 0.02 15.1 0.3 9.8 6.5 0.0 2.5 3 0 0 3 3 3 0 Putative zinc binding domain ACP_syn_III_C PF08541.10 gi|218883701|ref|YP_002428083.1| - 1.5e-12 47.5 0.0 1e-11 44.9 0.0 2.2 2 1 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|218883701|ref|YP_002428083.1| - 0.00013 21.5 0.0 0.0003 20.2 0.1 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|218883701|ref|YP_002428083.1| - 0.0013 18.6 0.6 0.0039 17.0 0.2 1.9 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.10 gi|218883701|ref|YP_002428083.1| - 0.0017 18.0 0.0 0.055 13.1 0.0 2.2 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ABC_tran PF00005.27 gi|218883702|ref|YP_002428084.1| - 1.2e-29 103.5 0.0 1.8e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|218883702|ref|YP_002428084.1| - 5.4e-18 65.3 0.1 1e-17 64.4 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|218883702|ref|YP_002428084.1| - 0.00055 19.8 0.4 0.11 12.3 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|218883702|ref|YP_002428084.1| - 0.007 16.6 0.5 0.017 15.4 0.5 1.8 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|218883702|ref|YP_002428084.1| - 0.0086 15.4 0.1 0.7 9.2 0.0 2.2 2 0 0 2 2 2 1 KaiC AAA_16 PF13191.6 gi|218883702|ref|YP_002428084.1| - 0.095 13.1 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain G-alpha PF00503.20 gi|218883702|ref|YP_002428084.1| - 0.13 11.4 0.2 0.72 8.9 0.1 1.7 1 1 1 2 2 2 0 G-protein alpha subunit AAA_29 PF13555.6 gi|218883702|ref|YP_002428084.1| - 0.15 11.8 0.2 0.27 11.0 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|218883703|ref|YP_002428085.1| - 4.8e-31 108.1 0.0 6.3e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|218883703|ref|YP_002428085.1| - 1.4e-18 67.1 0.0 2.3e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|218883703|ref|YP_002428085.1| - 2e-06 27.8 0.5 2e-05 24.6 0.1 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218883703|ref|YP_002428085.1| - 9.3e-06 25.2 0.7 0.00017 21.1 0.2 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|218883703|ref|YP_002428085.1| - 0.00061 19.4 0.0 0.0097 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|218883703|ref|YP_002428085.1| - 0.00069 19.1 0.2 0.043 13.2 0.1 2.2 2 0 0 2 2 2 1 Bacterial TniB protein ATP-synt_ab PF00006.25 gi|218883703|ref|YP_002428085.1| - 0.0082 15.8 0.0 0.011 15.3 0.0 1.4 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|218883703|ref|YP_002428085.1| - 0.0095 15.7 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|218883703|ref|YP_002428085.1| - 0.016 15.5 0.7 0.26 11.5 0.7 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|218883703|ref|YP_002428085.1| - 0.019 15.4 0.1 0.099 13.1 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.15 gi|218883703|ref|YP_002428085.1| - 0.025 13.9 0.1 5.7 6.2 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain RNA_helicase PF00910.22 gi|218883703|ref|YP_002428085.1| - 0.036 14.5 0.1 0.074 13.4 0.1 1.5 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|218883703|ref|YP_002428085.1| - 0.051 13.5 0.0 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|218883703|ref|YP_002428085.1| - 0.056 13.8 0.1 0.13 12.7 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|218883703|ref|YP_002428085.1| - 0.11 11.8 0.0 1.1 8.6 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PRK PF00485.18 gi|218883703|ref|YP_002428085.1| - 0.17 11.6 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|218883703|ref|YP_002428085.1| - 0.2 11.5 0.1 0.39 10.6 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|218883703|ref|YP_002428085.1| - 0.23 11.2 0.4 0.62 9.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Radical_SAM PF04055.21 gi|218883705|ref|YP_002428087.1| - 8.7e-21 75.0 0.0 1.7e-20 74.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily BPD_transp_1 PF00528.22 gi|218883706|ref|YP_002428088.1| - 2.8e-25 89.1 17.1 2.8e-25 89.1 17.1 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|218883707|ref|YP_002428089.1| - 2.5e-29 102.3 16.0 2.5e-29 102.3 16.0 2.6 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component DUF5343 PF17278.2 gi|218883707|ref|YP_002428089.1| - 0.16 12.0 0.0 0.33 11.0 0.0 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF5343) SBP_bac_5 PF00496.22 gi|218883708|ref|YP_002428090.1| - 8.1e-14 51.4 7.7 1.3e-10 40.8 0.1 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4064 PF13273.6 gi|218883708|ref|YP_002428090.1| - 0.011 16.0 1.5 0.044 14.0 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) HTH_psq PF05225.16 gi|218883708|ref|YP_002428090.1| - 0.047 13.4 0.1 0.28 11.0 0.0 2.2 2 0 0 2 2 2 0 helix-turn-helix, Psq domain Pox_A32 PF04665.12 gi|218883708|ref|YP_002428090.1| - 0.091 12.2 0.6 0.16 11.4 0.6 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein Apolipoprotein PF01442.18 gi|218883708|ref|YP_002428090.1| - 0.21 11.5 2.2 0.36 10.7 2.2 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain LPP PF04728.13 gi|218883708|ref|YP_002428090.1| - 0.34 11.3 2.9 1.1 9.7 2.9 1.8 1 0 0 1 1 1 0 Lipoprotein leucine-zipper DUF1664 PF07889.12 gi|218883708|ref|YP_002428090.1| - 0.56 10.3 4.2 5.8 7.0 4.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) Pox_Ag35 PF03286.14 gi|218883708|ref|YP_002428090.1| - 0.84 9.4 4.8 1.2 8.9 3.5 2.0 2 0 0 2 2 2 0 Pox virus Ag35 surface protein Prominin PF05478.11 gi|218883708|ref|YP_002428090.1| - 1.4 6.7 7.5 2.2 6.1 7.5 1.2 1 0 0 1 1 1 0 Prominin NPV_P10 PF05531.12 gi|218883708|ref|YP_002428090.1| - 3.7 8.1 7.0 1 9.9 1.7 2.7 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4618 PF15397.6 gi|218883708|ref|YP_002428090.1| - 8.4 5.7 9.7 1.4 8.3 0.5 3.1 3 1 1 4 4 4 0 Domain of unknown function (DUF4618) CD20 PF04103.15 gi|218883709|ref|YP_002428091.1| - 0.019 15.1 1.4 2.7 8.1 0.0 2.2 2 0 0 2 2 2 0 CD20-like family COX14 PF14880.6 gi|218883709|ref|YP_002428091.1| - 0.3 11.0 4.4 0.36 10.7 0.1 2.4 2 0 0 2 2 2 0 Cytochrome oxidase c assembly LapA_dom PF06305.11 gi|218883709|ref|YP_002428091.1| - 0.38 10.6 2.4 2.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF3318 PF11780.8 gi|218883710|ref|YP_002428092.1| - 0.022 14.7 0.2 0.023 14.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3318) DUF5353 PF17304.2 gi|218883710|ref|YP_002428092.1| - 0.026 14.3 1.4 0.026 14.3 0.2 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5353) PspB PF06667.12 gi|218883710|ref|YP_002428092.1| - 0.44 10.6 2.5 0.6 10.2 2.5 1.3 1 0 0 1 1 1 0 Phage shock protein B Phage_holin_3_6 PF07332.11 gi|218883710|ref|YP_002428092.1| - 9.7 6.3 8.5 28 4.8 8.5 1.6 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Glyco_hydro_35 PF01301.19 gi|218883713|ref|YP_002428095.1| - 1.8e-61 208.5 2.7 6.2e-61 206.7 0.2 2.4 3 0 0 3 3 3 1 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.15 gi|218883713|ref|YP_002428095.1| - 3.5e-08 33.2 3.1 4.8e-07 29.4 1.6 2.6 2 1 0 2 2 2 1 Beta-galactosidase BetaGal_dom2 PF10435.9 gi|218883713|ref|YP_002428095.1| - 3.2e-07 30.4 0.0 7e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Beta-galactosidase, domain 2 BetaGal_dom4_5 PF13364.6 gi|218883713|ref|YP_002428095.1| - 0.00018 22.1 0.0 0.27 11.8 0.0 3.5 3 0 0 3 3 3 2 Beta-galactosidase jelly roll domain Lipoprotein_21 PF14041.6 gi|218883713|ref|YP_002428095.1| - 0.18 11.9 0.0 2.5 8.3 0.0 2.6 3 0 0 3 3 3 0 LppP/LprE lipoprotein BPD_transp_1 PF00528.22 gi|218883714|ref|YP_002428096.1| - 3.1e-09 36.8 33.7 3.5e-08 33.4 30.9 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|218883715|ref|YP_002428097.1| - 9.8e-16 58.0 12.5 1.6e-15 57.3 12.5 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|218883716|ref|YP_002428098.1| - 1.4e-28 100.6 1.0 1.4e-28 100.6 1.0 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|218883716|ref|YP_002428098.1| - 1.2e-23 84.6 7.6 1.2e-23 84.6 7.6 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein T3SS_needle_reg PF09025.10 gi|218883716|ref|YP_002428098.1| - 0.069 13.1 0.2 0.66 10.0 0.1 2.3 3 0 0 3 3 3 0 YopR, type III needle-polymerisation regulator DUF2749 PF10907.8 gi|218883716|ref|YP_002428098.1| - 0.088 13.0 2.5 0.23 11.7 2.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) MDM31_MDM32 PF08118.11 gi|218883716|ref|YP_002428098.1| - 0.36 9.4 1.6 0.51 8.9 1.6 1.1 1 0 0 1 1 1 0 Yeast mitochondrial distribution and morphology (MDM) proteins Mucin PF01456.17 gi|218883716|ref|YP_002428098.1| - 0.48 10.4 31.5 0.77 9.7 30.5 1.8 2 0 0 2 2 2 0 Mucin-like glycoprotein Pilin_N PF07790.11 gi|218883716|ref|YP_002428098.1| - 0.52 11.3 4.5 1.3 10.0 4.5 1.6 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Shisa PF13908.6 gi|218883716|ref|YP_002428098.1| - 0.98 9.6 6.9 1.4 9.1 6.9 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Glyco_hydro_53 PF07745.13 gi|218883717|ref|YP_002428099.1| - 5.1e-119 397.2 0.2 6.9e-119 396.8 0.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 53 Glucodextran_C PF09985.9 gi|218883717|ref|YP_002428099.1| - 4e-51 173.7 0.6 2.9e-50 170.9 0.0 2.1 2 0 0 2 2 2 1 C-terminal binding-module, SLH-like, of glucodextranase Cellulase PF00150.18 gi|218883717|ref|YP_002428099.1| - 8e-11 41.9 0.3 1.3e-10 41.2 0.3 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Big_4 PF07532.11 gi|218883717|ref|YP_002428099.1| - 1.5e-05 24.6 0.4 4.6e-05 23.1 0.4 1.8 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 4) Glyco_hydro_cc PF11790.8 gi|218883717|ref|YP_002428099.1| - 8e-05 22.3 0.3 0.00018 21.2 0.3 1.6 1 0 0 1 1 1 1 Glycosyl hydrolase catalytic core Na_Ca_ex PF01699.24 gi|218883717|ref|YP_002428099.1| - 0.011 15.7 0.1 0.021 14.8 0.1 1.4 1 0 0 1 1 1 0 Sodium/calcium exchanger protein NADHdh PF00146.21 gi|218883718|ref|YP_002428100.1| - 4.3e-49 167.4 20.3 5.7e-49 167.0 20.3 1.0 1 0 0 1 1 1 1 NADH dehydrogenase OAD_gamma PF04277.13 gi|218883718|ref|YP_002428100.1| - 8.2 7.1 9.1 87 3.8 1.6 3.6 3 0 0 3 3 3 0 Oxaloacetate decarboxylase, gamma chain FixQ PF05545.11 gi|218883719|ref|YP_002428101.1| - 2.9 7.9 5.2 42 4.2 0.0 2.3 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Proton_antipo_M PF00361.20 gi|218883720|ref|YP_002428102.1| - 1.7e-52 178.5 25.3 1.7e-52 178.5 25.3 2.0 3 0 0 3 3 3 1 Proton-conducting membrane transporter DUF3493 PF11998.8 gi|218883720|ref|YP_002428102.1| - 0.43 10.8 13.8 1.5 9.1 0.0 5.3 5 0 0 5 5 5 0 Low psii accumulation1 / Rep27 TraA PF05513.11 gi|218883720|ref|YP_002428102.1| - 2.6 8.4 9.3 0.15 12.4 1.4 2.9 3 0 0 3 3 3 0 TraA MNHE PF01899.16 gi|218883721|ref|YP_002428103.1| - 1.6e-41 141.5 0.5 1.8e-41 141.3 0.5 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q2 PF00420.24 gi|218883722|ref|YP_002428104.1| - 1.6e-21 75.9 0.2 2.2e-21 75.5 0.2 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2070 PF09843.9 gi|218883722|ref|YP_002428104.1| - 0.099 10.9 5.8 0.12 10.6 5.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2583 PF10762.9 gi|218883722|ref|YP_002428104.1| - 0.35 11.3 2.7 17 5.9 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2583) MnhB PF04039.13 gi|218883723|ref|YP_002428105.1| - 7.9e-21 74.6 15.4 7.9e-21 74.6 15.4 1.9 2 0 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4337 PF14235.6 gi|218883723|ref|YP_002428105.1| - 1.8 8.7 4.1 4.3 7.4 4.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4040 PF13244.6 gi|218883724|ref|YP_002428106.1| - 1.7e-12 47.3 3.8 1.7e-12 47.3 3.8 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) DUF2070 PF09843.9 gi|218883724|ref|YP_002428106.1| - 0.0018 16.7 6.1 0.0019 16.6 6.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF5438 PF17506.2 gi|218883724|ref|YP_002428106.1| - 0.016 15.5 1.1 0.016 15.5 1.1 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5438) CreD PF06123.12 gi|218883724|ref|YP_002428106.1| - 1 8.1 6.5 1.1 8.0 6.5 1.0 1 0 0 1 1 1 0 Inner membrane protein CreD PhaG_MnhG_YufB PF03334.14 gi|218883725|ref|YP_002428107.1| - 1.6e-15 57.1 11.6 2e-15 56.7 11.6 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit SpoIIIAC PF06686.11 gi|218883725|ref|YP_002428107.1| - 0.64 10.2 0.2 0.64 10.2 0.2 3.2 3 1 0 3 3 3 0 Stage III sporulation protein AC/AD protein family TPPK_C PF12555.8 gi|218883725|ref|YP_002428107.1| - 2.9 8.0 7.7 1.9 8.6 0.8 2.6 2 1 0 2 2 2 0 Thiamine pyrophosphokinase C terminal MrpF_PhaF PF04066.13 gi|218883726|ref|YP_002428108.1| - 3.7e-11 43.3 6.2 3.7e-11 43.3 6.2 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MgtE PF01769.16 gi|218883726|ref|YP_002428108.1| - 0.29 11.5 10.3 0.36 11.2 10.3 1.1 1 0 0 1 1 1 0 Divalent cation transporter Fer4 PF00037.27 gi|218883727|ref|YP_002428109.1| - 3.6e-14 51.9 12.0 1.8e-07 30.7 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|218883727|ref|YP_002428109.1| - 5.6e-11 42.9 7.2 8.9e-11 42.2 7.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|218883727|ref|YP_002428109.1| - 5e-10 39.3 17.9 6.8e-07 29.3 10.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|218883727|ref|YP_002428109.1| - 6.6e-10 39.0 4.7 3.7e-05 23.7 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218883727|ref|YP_002428109.1| - 2e-09 37.1 12.1 2.7e-05 24.0 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|218883727|ref|YP_002428109.1| - 2.7e-09 37.0 27.4 4.1e-06 26.9 9.7 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|218883727|ref|YP_002428109.1| - 1.1e-07 32.6 6.7 0.001 20.0 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|218883727|ref|YP_002428109.1| - 2.5e-07 30.4 10.5 0.0018 18.2 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|218883727|ref|YP_002428109.1| - 1.1e-06 28.9 2.9 0.013 15.9 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|218883727|ref|YP_002428109.1| - 2.2e-06 28.1 4.8 0.0075 16.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|218883727|ref|YP_002428109.1| - 0.0011 19.1 2.4 0.13 12.4 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|218883727|ref|YP_002428109.1| - 0.0022 18.8 14.8 0.068 14.1 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|218883727|ref|YP_002428109.1| - 0.0025 18.6 4.1 0.38 11.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|218883727|ref|YP_002428109.1| - 0.031 14.8 10.9 0.86 10.3 2.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|218883727|ref|YP_002428109.1| - 0.18 12.6 7.5 2.8 8.7 0.1 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|218883727|ref|YP_002428109.1| - 0.74 10.4 8.1 7.5 7.2 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Complex1_49kDa PF00346.19 gi|218883728|ref|YP_002428110.1| - 2.3e-66 223.7 1.0 7.6e-64 215.4 1.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|218883728|ref|YP_002428110.1| - 4.7e-13 48.9 5.2 1.1e-10 41.1 0.5 3.6 4 0 0 4 4 4 2 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|218883729|ref|YP_002428111.1| - 6.7e-18 65.5 0.0 7.8e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|218883730|ref|YP_002428112.1| - 9.4e-29 99.9 0.5 1.3e-28 99.5 0.5 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NepR PF18557.1 gi|218883730|ref|YP_002428112.1| - 0.14 11.8 0.6 5.9 6.6 0.3 2.3 2 0 0 2 2 2 0 Anti-sigma factor NepR Sua5_yciO_yrdC PF01300.18 gi|218883731|ref|YP_002428113.1| - 3.5e-43 147.2 0.0 5e-43 146.7 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|218883731|ref|YP_002428113.1| - 1.2e-30 104.9 10.8 3.2e-15 55.6 1.8 2.4 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|218883731|ref|YP_002428113.1| - 3.2e-22 79.1 0.0 7.1e-22 78.0 0.0 1.6 2 0 0 2 2 2 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|218883731|ref|YP_002428113.1| - 7.3e-18 64.8 0.1 1.8e-17 63.5 0.0 1.7 2 0 0 2 2 2 1 Acylphosphatase FGGY_C PF02782.16 gi|218883731|ref|YP_002428113.1| - 0.0043 16.8 0.0 0.0071 16.1 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain HupF_HypC PF01455.18 gi|218883732|ref|YP_002428114.1| - 2.2e-22 79.0 0.3 2.5e-22 78.8 0.3 1.0 1 0 0 1 1 1 1 HupF/HypC family Hexapep PF00132.24 gi|218883732|ref|YP_002428114.1| - 0.033 13.9 0.6 0.054 13.2 0.1 1.6 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) AIRS_C PF02769.22 gi|218883733|ref|YP_002428115.1| - 1.4e-22 80.5 0.0 2e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|218883733|ref|YP_002428115.1| - 2.6e-14 53.7 0.5 5.9e-14 52.5 0.5 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF4346 PF14251.6 gi|218883734|ref|YP_002428116.1| - 8e-09 35.6 0.1 0.0033 17.4 0.1 2.9 2 0 0 2 2 2 2 Domain of unknown function (DUF4346) CdhD PF03599.16 gi|218883734|ref|YP_002428116.1| - 0.006 15.3 0.3 0.011 14.5 0.3 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit MobB PF03205.14 gi|218883734|ref|YP_002428116.1| - 0.016 15.1 0.1 0.12 12.2 0.0 2.3 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Pterin_bind PF00809.22 gi|218883734|ref|YP_002428116.1| - 0.034 13.8 0.5 0.07 12.8 0.5 1.5 1 0 0 1 1 1 0 Pterin binding enzyme Flavoprotein PF02441.19 gi|218883735|ref|YP_002428117.1| - 1.6e-17 63.7 0.0 2.9e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Flavoprotein Fer4_6 PF12837.7 gi|218883735|ref|YP_002428117.1| - 3.7e-09 36.2 14.1 2.6e-05 24.1 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|218883735|ref|YP_002428117.1| - 8.3e-07 29.9 7.0 0.00079 20.3 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|218883735|ref|YP_002428117.1| - 1.2e-06 28.0 14.4 0.0012 18.6 2.1 3.2 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|218883735|ref|YP_002428117.1| - 2.6e-06 27.4 8.5 4.1e-06 26.8 8.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|218883735|ref|YP_002428117.1| - 3.1e-06 27.7 11.5 0.00085 19.9 14.1 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|218883735|ref|YP_002428117.1| - 3e-05 24.1 11.6 4.9e-05 23.4 11.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|218883735|ref|YP_002428117.1| - 3.2e-05 23.7 12.7 0.0075 16.3 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|218883735|ref|YP_002428117.1| - 5.1e-05 23.3 13.8 0.00039 20.5 14.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|218883735|ref|YP_002428117.1| - 0.0058 17.1 6.3 0.13 12.9 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Ribosomal_L31 PF01197.18 gi|218883735|ref|YP_002428117.1| - 0.14 12.4 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L31 Fer4_3 PF12798.7 gi|218883735|ref|YP_002428117.1| - 0.44 11.6 11.5 0.6 11.2 2.2 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|218883735|ref|YP_002428117.1| - 1.8 9.3 15.7 3.4 8.4 3.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|218883735|ref|YP_002428117.1| - 5.6 7.8 13.4 46 4.8 0.9 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain DHNA PF04038.12 gi|218883736|ref|YP_002428118.1| - 1.3e-34 119.0 0.0 1.5e-34 118.7 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase MAF_flag10 PF01973.18 gi|218883737|ref|YP_002428119.1| - 5e-25 88.2 0.0 7.1e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 GCHY-1 PF02649.14 gi|218883738|ref|YP_002428120.1| - 3.3e-32 112.0 0.0 4.1e-32 111.7 0.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 Desulfoferrodox PF01880.18 gi|218883740|ref|YP_002428122.1| - 1.2e-29 102.7 0.0 1.5e-29 102.5 0.0 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|218883740|ref|YP_002428122.1| - 4e-09 36.7 0.0 5.4e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY Apocytochr_F_N PF16639.5 gi|218883740|ref|YP_002428122.1| - 0.052 13.8 0.1 0.076 13.3 0.1 1.3 1 0 0 1 1 1 0 Apocytochrome F, N-terminal HTH_AsnC-type PF13404.6 gi|218883742|ref|YP_002428124.1| - 1.1e-13 50.7 0.2 1.7e-13 50.2 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|218883742|ref|YP_002428124.1| - 5.1e-10 39.2 0.1 1.3e-09 37.9 0.0 1.7 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|218883742|ref|YP_002428124.1| - 3e-09 36.3 1.4 4.1e-09 35.9 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|218883742|ref|YP_002428124.1| - 7.6e-05 22.6 0.2 0.0011 18.8 0.1 2.5 3 1 0 3 3 3 1 MarR family NapD PF03927.13 gi|218883742|ref|YP_002428124.1| - 0.00019 21.4 0.0 0.00034 20.6 0.0 1.3 1 0 0 1 1 1 1 NapD protein HTH_27 PF13463.6 gi|218883742|ref|YP_002428124.1| - 0.00041 20.8 0.3 0.0015 19.0 0.1 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|218883742|ref|YP_002428124.1| - 0.0028 17.5 0.1 0.0068 16.3 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|218883742|ref|YP_002428124.1| - 0.0028 17.6 0.0 0.0053 16.7 0.0 1.5 1 0 0 1 1 1 1 HTH domain HxlR PF01638.17 gi|218883742|ref|YP_002428124.1| - 0.0072 16.1 0.1 0.011 15.5 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|218883742|ref|YP_002428124.1| - 0.015 15.4 0.2 0.11 12.7 0.0 2.2 2 1 1 3 3 3 0 Winged helix DNA-binding domain AsnC_trans_reg2 PF17805.1 gi|218883742|ref|YP_002428124.1| - 0.02 15.0 0.0 0.15 12.3 0.0 1.9 2 0 0 2 2 2 0 AsnC-like ligand binding domain HTH_50 PF18024.1 gi|218883742|ref|YP_002428124.1| - 0.023 14.3 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|218883742|ref|YP_002428124.1| - 0.032 14.1 0.6 0.14 12.1 0.1 2.0 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB RepL PF05732.11 gi|218883742|ref|YP_002428124.1| - 0.052 13.0 0.1 0.19 11.2 0.0 1.8 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) Fe_dep_repress PF01325.19 gi|218883742|ref|YP_002428124.1| - 0.065 13.5 0.0 20 5.5 0.0 2.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain ACT_4 PF13291.6 gi|218883742|ref|YP_002428124.1| - 0.079 13.6 0.2 2.3 8.9 0.0 2.7 3 0 0 3 3 3 0 ACT domain LexA_DNA_bind PF01726.16 gi|218883742|ref|YP_002428124.1| - 0.12 12.2 0.1 0.28 11.0 0.1 1.6 1 0 0 1 1 1 0 LexA DNA binding domain DUF438 PF04282.13 gi|218883743|ref|YP_002428125.1| - 1.2e-11 44.4 0.1 1.8e-11 43.8 0.1 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF438) Trypsin_2 PF13365.6 gi|218883744|ref|YP_002428126.1| - 3.2e-29 102.8 0.6 4.9e-29 102.2 0.6 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|218883744|ref|YP_002428126.1| - 1.1e-16 61.3 0.0 2.2e-16 60.3 0.0 1.4 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|218883744|ref|YP_002428126.1| - 1e-13 51.4 0.0 2.7e-13 50.0 0.0 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|218883744|ref|YP_002428126.1| - 2.1e-13 49.9 0.3 7e-13 48.2 0.2 2.0 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|218883744|ref|YP_002428126.1| - 1.1e-09 38.6 0.0 2.6e-09 37.3 0.0 1.8 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.6 gi|218883744|ref|YP_002428126.1| - 0.00032 20.6 0.5 0.0012 18.8 0.1 2.1 2 0 0 2 2 2 1 Tricorn protease PDZ domain Peptidase_S46 PF10459.9 gi|218883744|ref|YP_002428126.1| - 0.00041 19.2 0.9 0.49 9.0 0.3 2.1 2 0 0 2 2 2 2 Peptidase S46 PDZ_1 PF12812.7 gi|218883744|ref|YP_002428126.1| - 0.049 13.7 0.0 0.27 11.3 0.0 2.3 2 1 1 3 3 3 0 PDZ-like domain Mem_trans PF03547.18 gi|218883745|ref|YP_002428127.1| - 5.3e-13 48.1 26.1 1.2e-06 27.2 6.5 2.2 1 1 1 2 2 2 2 Membrane transport protein PA14 PF07691.12 gi|218883746|ref|YP_002428128.1| - 1e-15 57.8 0.0 1.4e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 PA14 domain GLEYA PF10528.9 gi|218883746|ref|YP_002428128.1| - 0.0011 19.4 0.0 0.0023 18.3 0.0 1.6 1 0 0 1 1 1 1 GLEYA domain Alpha-amyl_C PF09071.10 gi|218883746|ref|YP_002428128.1| - 0.035 13.9 0.2 0.063 13.1 0.2 1.4 1 0 0 1 1 1 0 Alpha-amylase, C terminal HD PF01966.22 gi|218883747|ref|YP_002428129.1| - 0.019 15.2 0.1 0.038 14.2 0.1 1.5 1 0 0 1 1 1 0 HD domain tRNA-synt_2 PF00152.20 gi|218883748|ref|YP_002428130.1| - 5.8e-35 120.9 0.0 7.8e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) Resolvase PF00239.21 gi|218883749|ref|YP_002428131.1| - 3.7e-24 85.5 0.6 6.1e-24 84.8 0.5 1.4 1 1 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|218883749|ref|YP_002428131.1| - 4e-08 33.3 0.0 8.1e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|218883749|ref|YP_002428131.1| - 0.025 14.3 1.3 0.07 12.9 0.0 2.4 4 0 0 4 4 4 0 MerR family regulatory protein OrfB_Zn_ribbon PF07282.11 gi|218883750|ref|YP_002428132.1| - 1.1e-17 63.7 0.0 2.1e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Pyr_redox_2 PF07992.14 gi|218883752|ref|YP_002428134.1| - 1.8e-47 162.0 2.5 2.5e-47 161.5 2.5 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|218883752|ref|YP_002428134.1| - 1.9e-17 63.6 2.0 1.2e-14 54.6 0.4 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|218883752|ref|YP_002428134.1| - 2e-08 33.9 1.9 1.6e-06 27.6 0.4 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|218883752|ref|YP_002428134.1| - 1.6e-06 27.1 1.1 0.0043 15.8 0.0 3.0 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.7 gi|218883752|ref|YP_002428134.1| - 2.7e-06 27.0 0.4 0.0027 17.1 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_dim PF02852.22 gi|218883752|ref|YP_002428134.1| - 6.2e-06 26.4 0.0 1.6e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_binding_2 PF00890.24 gi|218883752|ref|YP_002428134.1| - 0.00011 21.5 0.5 0.00058 19.1 0.2 2.3 2 0 0 2 2 2 1 FAD binding domain K_oxygenase PF13434.6 gi|218883752|ref|YP_002428134.1| - 0.00018 20.8 0.0 0.0055 15.9 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|218883752|ref|YP_002428134.1| - 0.0003 20.0 2.3 0.03 13.4 0.1 2.9 2 1 1 3 3 3 2 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|218883752|ref|YP_002428134.1| - 0.00057 18.8 0.8 0.016 14.1 0.1 2.4 2 0 0 2 2 2 1 Tryptophan halogenase GIDA PF01134.22 gi|218883752|ref|YP_002428134.1| - 0.0015 17.7 7.6 0.034 13.2 0.1 3.3 2 1 0 3 3 3 1 Glucose inhibited division protein A DAO PF01266.24 gi|218883752|ref|YP_002428134.1| - 0.0071 16.0 12.5 0.26 10.8 0.1 3.9 3 1 0 4 4 4 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|218883752|ref|YP_002428134.1| - 0.009 15.3 0.8 0.039 13.2 0.0 2.4 3 0 0 3 3 3 1 Thi4 family NAD_binding_9 PF13454.6 gi|218883752|ref|YP_002428134.1| - 0.014 15.3 3.2 0.9 9.5 0.0 3.3 4 0 0 4 4 4 0 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|218883752|ref|YP_002428134.1| - 0.11 11.7 0.1 0.24 10.6 0.1 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|218883752|ref|YP_002428134.1| - 0.12 12.7 0.2 1 9.6 0.1 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Mqo PF06039.15 gi|218883752|ref|YP_002428134.1| - 0.19 10.2 0.0 0.29 9.6 0.0 1.2 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) Lactamase_B_2 PF12706.7 gi|218883753|ref|YP_002428135.1| - 2.6e-05 23.8 0.1 4.7e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|218883753|ref|YP_002428135.1| - 0.00021 21.2 0.0 0.00047 20.1 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|218883753|ref|YP_002428135.1| - 0.0048 16.9 2.6 0.1 12.6 1.4 2.3 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily DHH PF01368.20 gi|218883753|ref|YP_002428135.1| - 0.0052 17.0 0.4 0.086 13.1 0.0 2.2 2 0 0 2 2 2 1 DHH family Vps23_core PF09454.10 gi|218883753|ref|YP_002428135.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Vps23 core domain Deltameth_res PF16020.5 gi|218883754|ref|YP_002428136.1| - 5 7.1 5.6 1.7 8.6 0.8 2.0 1 1 1 2 2 2 0 Deltamethrin resistance DUF4231 PF14015.6 gi|218883755|ref|YP_002428137.1| - 5.9 7.4 7.4 0.46 11.0 0.3 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) DUF58 PF01882.18 gi|218883756|ref|YP_002428138.1| - 3.1e-15 56.2 0.0 6.3e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|218883757|ref|YP_002428139.1| - 2.9e-63 211.6 0.1 4.9e-63 210.8 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|218883757|ref|YP_002428139.1| - 1.7e-19 69.4 0.1 4.1e-19 68.2 0.1 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|218883757|ref|YP_002428139.1| - 2.2e-17 63.4 0.0 1.1e-16 61.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|218883757|ref|YP_002428139.1| - 7.4e-08 32.9 0.0 1.9e-07 31.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|218883757|ref|YP_002428139.1| - 1.1e-06 28.4 0.1 1.7e-05 24.6 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|218883757|ref|YP_002428139.1| - 6.8e-06 25.6 0.4 0.092 12.1 0.1 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|218883757|ref|YP_002428139.1| - 1.4e-05 24.3 0.0 7.4e-05 22.0 0.0 2.1 1 1 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|218883757|ref|YP_002428139.1| - 0.00023 20.9 0.1 0.0054 16.5 0.1 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF4548 PF15081.6 gi|218883757|ref|YP_002428139.1| - 0.0031 17.4 0.0 0.028 14.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4548) AAA_16 PF13191.6 gi|218883757|ref|YP_002428139.1| - 0.067 13.6 0.1 1 9.7 0.1 2.3 1 1 0 2 2 2 0 AAA ATPase domain ATPase PF06745.13 gi|218883757|ref|YP_002428139.1| - 0.17 11.2 0.6 0.33 10.3 0.0 1.6 2 0 0 2 2 2 0 KaiC NfeD PF01957.18 gi|218883758|ref|YP_002428140.1| - 2.6e-08 34.1 0.7 1.1e-07 32.1 0.7 2.2 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|218883758|ref|YP_002428140.1| - 0.00092 19.1 0.1 0.0016 18.4 0.1 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|218883758|ref|YP_002428140.1| - 0.0088 15.1 0.6 0.02 13.9 0.2 1.7 2 0 0 2 2 2 1 Serine dehydrogenase proteinase Band_7 PF01145.25 gi|218883759|ref|YP_002428141.1| - 7.9e-37 127.0 0.8 1e-36 126.6 0.8 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|218883759|ref|YP_002428141.1| - 0.00067 19.4 0.1 0.0012 18.5 0.1 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family ProSAAS PF07259.12 gi|218883759|ref|YP_002428141.1| - 0.0085 16.1 0.6 0.015 15.3 0.6 1.3 1 0 0 1 1 1 1 ProSAAS precursor PRKCSH_1 PF13015.6 gi|218883759|ref|YP_002428141.1| - 0.029 14.1 0.1 0.64 9.7 0.0 2.2 1 1 1 2 2 2 0 Glucosidase II beta subunit-like protein EamA PF00892.20 gi|218883760|ref|YP_002428142.1| - 5.5e-17 62.2 33.0 1.6e-09 38.1 10.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family MFS_1 PF07690.16 gi|218883761|ref|YP_002428143.1| - 2e-12 46.7 45.8 2.4e-10 39.9 27.5 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily MS_channel PF00924.18 gi|218883762|ref|YP_002428144.1| - 8e-14 51.7 5.4 1e-13 51.3 5.4 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|218883762|ref|YP_002428144.1| - 0.0034 17.3 1.0 0.0034 17.3 1.0 2.8 3 0 0 3 3 3 1 Conserved TM helix ACDC PF14733.6 gi|218883762|ref|YP_002428144.1| - 0.053 13.8 0.0 0.79 10.1 0.0 2.5 2 0 0 2 2 2 0 AP2-coincident C-terminal Pox_P21 PF05313.12 gi|218883762|ref|YP_002428144.1| - 0.87 9.1 8.5 1.5 8.3 8.5 1.4 1 0 0 1 1 1 0 Poxvirus P21 membrane protein DUF2964 PF11177.8 gi|218883762|ref|YP_002428144.1| - 5.2 7.3 9.3 0.46 10.7 4.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) TrkA_N PF02254.18 gi|218883763|ref|YP_002428145.1| - 0.0082 16.4 0.1 0.013 15.8 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain DUF402 PF04167.13 gi|218883766|ref|YP_002428148.1| - 1.5e-12 47.6 0.8 3.2e-12 46.5 0.8 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|218883766|ref|YP_002428148.1| - 2.2e-06 27.3 0.0 3.4e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family tRNA-synt_2b PF00587.25 gi|218883767|ref|YP_002428149.1| - 2.6e-31 109.0 0.0 4.2e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|218883767|ref|YP_002428149.1| - 5.1e-22 78.1 4.4 9.1e-22 77.3 4.4 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Sec5 PF15469.6 gi|218883767|ref|YP_002428149.1| - 0.074 12.9 0.1 0.31 10.8 0.0 1.9 2 0 0 2 2 2 0 Exocyst complex component Sec5 FeS_assembly_P PF01883.19 gi|218883768|ref|YP_002428150.1| - 3.5e-15 55.9 0.1 4.8e-15 55.5 0.1 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein SBP_bac_5 PF00496.22 gi|218883768|ref|YP_002428150.1| - 0.12 11.3 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle IF-2B PF01008.17 gi|218883770|ref|YP_002428152.1| - 4.8e-88 295.0 0.2 5.7e-88 294.8 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family IF-2B PF01008.17 gi|218883771|ref|YP_002428153.1| - 3.1e-52 177.5 0.0 4e-52 177.2 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family PsbK PF02533.15 gi|218883771|ref|YP_002428153.1| - 0.13 12.5 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 Photosystem II 4 kDa reaction centre component Flavoprotein PF02441.19 gi|218883771|ref|YP_002428153.1| - 0.15 11.8 0.1 0.99 9.1 0.1 2.0 1 1 1 2 2 2 0 Flavoprotein AAA_26 PF13500.6 gi|218883772|ref|YP_002428154.1| - 5.6e-05 23.1 0.0 0.0002 21.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|218883772|ref|YP_002428154.1| - 0.031 14.3 0.1 0.075 13.1 0.1 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SlyX PF04102.12 gi|218883773|ref|YP_002428155.1| - 0.0021 18.6 1.7 0.0036 17.9 1.7 1.4 1 0 0 1 1 1 1 SlyX DUF4201 PF13870.6 gi|218883773|ref|YP_002428155.1| - 0.0028 17.4 4.5 0.004 16.9 4.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) Spc7 PF08317.11 gi|218883773|ref|YP_002428155.1| - 0.003 16.5 2.2 0.0043 16.0 2.2 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein YabA PF06156.13 gi|218883773|ref|YP_002428155.1| - 0.0066 17.1 2.0 0.011 16.4 2.0 1.3 1 0 0 1 1 1 1 Initiation control protein YabA Cast PF10174.9 gi|218883773|ref|YP_002428155.1| - 0.0075 14.6 3.9 0.01 14.1 3.9 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone HAUS-augmin3 PF14932.6 gi|218883773|ref|YP_002428155.1| - 0.012 15.2 2.0 0.017 14.7 2.0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Atg14 PF10186.9 gi|218883773|ref|YP_002428155.1| - 0.014 14.5 2.0 0.021 13.9 2.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 RPW8 PF05659.11 gi|218883773|ref|YP_002428155.1| - 0.027 14.1 0.3 0.048 13.4 0.3 1.3 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DivIC PF04977.15 gi|218883773|ref|YP_002428155.1| - 0.03 14.1 2.4 0.055 13.2 1.2 2.0 1 1 1 2 2 2 0 Septum formation initiator TolA_bind_tri PF16331.5 gi|218883773|ref|YP_002428155.1| - 0.031 14.4 1.7 0.049 13.7 1.7 1.3 1 0 0 1 1 1 0 TolA binding protein trimerisation TMF_DNA_bd PF12329.8 gi|218883773|ref|YP_002428155.1| - 0.039 13.9 6.8 0.056 13.5 6.8 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fez1 PF06818.15 gi|218883773|ref|YP_002428155.1| - 0.08 13.4 1.9 0.12 12.8 1.9 1.1 1 0 0 1 1 1 0 Fez1 DUF1664 PF07889.12 gi|218883773|ref|YP_002428155.1| - 0.14 12.2 0.8 0.24 11.4 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4472 PF14739.6 gi|218883773|ref|YP_002428155.1| - 0.2 12.4 3.7 0.33 11.7 3.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4472) Pox_A_type_inc PF04508.12 gi|218883773|ref|YP_002428155.1| - 0.26 11.2 1.4 1.4 8.8 0.1 2.6 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat ATG16 PF08614.11 gi|218883773|ref|YP_002428155.1| - 0.28 11.4 4.7 0.41 10.8 4.7 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF641 PF04859.12 gi|218883773|ref|YP_002428155.1| - 0.33 11.3 1.4 0.49 10.7 0.9 1.5 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) Phage_GP20 PF06810.11 gi|218883773|ref|YP_002428155.1| - 0.39 10.5 2.8 0.61 9.9 2.8 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 IFT57 PF10498.9 gi|218883773|ref|YP_002428155.1| - 0.44 9.5 4.3 0.63 9.0 4.3 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Uso1_p115_C PF04871.13 gi|218883773|ref|YP_002428155.1| - 0.58 10.5 5.0 0.85 10.0 5.0 1.2 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region CC2-LZ PF16516.5 gi|218883773|ref|YP_002428155.1| - 0.78 10.1 2.8 1.6 9.2 2.8 1.4 1 1 0 1 1 1 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator YdjM PF04307.14 gi|218883774|ref|YP_002428156.1| - 7.6e-18 64.4 12.4 1.8e-16 60.0 12.4 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Pox_LP_H2 PF03356.15 gi|218883774|ref|YP_002428156.1| - 0.72 9.7 3.1 0.23 11.3 0.7 1.4 2 0 0 2 2 2 0 Viral late protein H2 Rib_5-P_isom_A PF06026.14 gi|218883775|ref|YP_002428157.1| - 3.2e-48 163.6 0.0 3.8e-48 163.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Peptidase_M55 PF04951.13 gi|218883776|ref|YP_002428158.1| - 1.2e-87 293.6 0.0 1.5e-87 293.4 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Creatininase PF02633.14 gi|218883776|ref|YP_002428158.1| - 0.097 12.1 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Creatinine amidohydrolase HD_3 PF13023.6 gi|218883777|ref|YP_002428159.1| - 7e-18 65.1 0.0 1.6e-17 64.0 0.0 1.6 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|218883777|ref|YP_002428159.1| - 6.3e-12 45.6 0.1 8.3e-12 45.2 0.1 1.2 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|218883777|ref|YP_002428159.1| - 0.00047 20.4 0.4 0.0015 18.7 0.1 1.9 2 1 0 2 2 2 1 HD domain 2-Hacid_dh PF00389.30 gi|218883777|ref|YP_002428159.1| - 0.1 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PYC_OADA PF02436.18 gi|218883778|ref|YP_002428160.1| - 1.1e-53 182.0 0.0 2e-53 181.1 0.0 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|218883778|ref|YP_002428160.1| - 1e-40 140.0 0.0 1.4e-40 139.5 0.0 1.2 1 0 0 1 1 1 1 HMGL-like ADH_zinc_N PF00107.26 gi|218883778|ref|YP_002428160.1| - 0.15 12.0 0.1 8.3 6.4 0.0 2.9 2 1 1 3 3 3 0 Zinc-binding dehydrogenase Aminotran_1_2 PF00155.21 gi|218883779|ref|YP_002428161.1| - 3.7e-49 167.8 0.0 4.4e-49 167.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DUF1743 PF08489.11 gi|218883780|ref|YP_002428162.1| - 2.6e-38 130.6 0.0 4.6e-38 129.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) RNA_POL_M_15KD PF02150.16 gi|218883780|ref|YP_002428162.1| - 0.0005 19.9 1.3 0.0012 18.7 1.3 1.6 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit tRNA_anti-codon PF01336.25 gi|218883780|ref|YP_002428162.1| - 0.0023 17.9 0.0 0.14 12.1 0.0 2.3 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|218883780|ref|YP_002428162.1| - 0.0032 17.4 2.4 0.0073 16.2 2.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|218883780|ref|YP_002428162.1| - 0.0048 16.9 0.4 0.011 15.7 0.4 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MCM_OB PF17207.3 gi|218883780|ref|YP_002428162.1| - 0.43 10.4 5.4 0.93 9.4 0.0 2.8 2 1 1 3 3 3 0 MCM OB domain zinc_ribbon_2 PF13240.6 gi|218883780|ref|YP_002428162.1| - 0.7 9.7 4.5 9.1 6.2 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|218883780|ref|YP_002428162.1| - 1.1 8.6 3.8 0.92 8.9 1.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|218883780|ref|YP_002428162.1| - 1.1 9.2 8.6 0.063 13.3 2.9 1.9 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DS PF01916.17 gi|218883781|ref|YP_002428163.1| - 4.1e-104 347.9 0.0 4.7e-104 347.7 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Mrr_cat PF04471.12 gi|218883782|ref|YP_002428164.1| - 0.00041 20.4 0.0 0.00085 19.3 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease HTH_Crp_2 PF13545.6 gi|218883784|ref|YP_002428166.1| - 0.025 14.6 0.1 0.075 13.0 0.1 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_CodY PF08222.11 gi|218883784|ref|YP_002428166.1| - 0.03 13.9 0.3 0.17 11.5 0.0 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain HxlR PF01638.17 gi|218883784|ref|YP_002428166.1| - 0.048 13.5 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DIM PF08194.12 gi|218883784|ref|YP_002428166.1| - 0.56 10.5 2.5 1.1 9.5 2.5 1.5 1 0 0 1 1 1 0 DIM protein DHO_dh PF01180.21 gi|218883785|ref|YP_002428167.1| - 8.8e-54 182.7 0.0 1e-53 182.5 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|218883785|ref|YP_002428167.1| - 6.4e-10 38.6 0.3 2.2e-09 36.8 0.0 1.7 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|218883785|ref|YP_002428167.1| - 3.9e-05 23.2 0.8 0.0012 18.3 0.1 2.8 4 0 0 4 4 4 1 Histidine biosynthesis protein NMO PF03060.15 gi|218883785|ref|YP_002428167.1| - 0.0012 18.3 2.5 0.017 14.5 0.5 2.1 1 1 1 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.25 gi|218883785|ref|YP_002428167.1| - 0.021 13.8 0.3 0.055 12.4 0.0 1.9 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain DHDPS PF00701.22 gi|218883785|ref|YP_002428167.1| - 0.022 13.5 0.1 0.47 9.1 0.0 2.2 2 0 0 2 2 2 0 Dihydrodipicolinate synthetase family FMN_dh PF01070.18 gi|218883785|ref|YP_002428167.1| - 0.16 11.0 3.3 0.24 10.4 1.5 2.3 3 1 0 3 3 3 0 FMN-dependent dehydrogenase DHODB_Fe-S_bind PF10418.9 gi|218883786|ref|YP_002428168.1| - 2.6e-09 36.7 2.6 2.6e-09 36.7 2.6 2.0 3 0 0 3 3 3 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|218883786|ref|YP_002428168.1| - 8.4e-06 26.4 0.0 1.2e-05 25.9 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.12 gi|218883786|ref|YP_002428168.1| - 0.019 15.1 0.0 0.04 14.0 0.0 1.6 1 0 0 1 1 1 0 Ferric reductase NAD binding domain Pribosyltran PF00156.27 gi|218883787|ref|YP_002428169.1| - 2.1e-18 66.3 1.1 3e-18 65.8 1.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|218883787|ref|YP_002428169.1| - 0.0074 15.8 0.1 0.011 15.2 0.1 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase NMT PF01233.19 gi|218883787|ref|YP_002428169.1| - 0.022 14.6 0.1 0.076 12.9 0.0 1.8 2 0 0 2 2 2 0 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain SHOCT PF09851.9 gi|218883787|ref|YP_002428169.1| - 0.068 12.9 0.9 0.11 12.3 0.1 1.8 2 0 0 2 2 2 0 Short C-terminal domain OMPdecase PF00215.24 gi|218883788|ref|YP_002428170.1| - 3.2e-26 92.3 0.0 4.1e-26 92.0 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family ThiC_Rad_SAM PF01964.18 gi|218883788|ref|YP_002428170.1| - 0.057 12.2 0.1 0.079 11.7 0.1 1.1 1 0 0 1 1 1 0 Radical SAM ThiC family Pribosyltran PF00156.27 gi|218883789|ref|YP_002428171.1| - 1.1e-23 83.5 0.0 1.6e-23 83.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|218883789|ref|YP_002428171.1| - 0.0072 15.8 0.0 0.009 15.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DAO PF01266.24 gi|218883789|ref|YP_002428171.1| - 0.051 13.2 0.0 2.2 7.8 0.0 2.0 1 1 1 2 2 2 0 FAD dependent oxidoreductase GMP_synt_C PF00958.22 gi|218883790|ref|YP_002428172.1| - 6.8e-34 115.8 0.9 1.1e-32 111.9 0.1 2.4 2 0 0 2 2 2 1 GMP synthase C terminal domain GATase PF00117.28 gi|218883790|ref|YP_002428172.1| - 8.8e-31 107.1 0.0 1.6e-30 106.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I NAD_synthase PF02540.17 gi|218883790|ref|YP_002428172.1| - 1.2e-11 44.2 0.1 2.1e-05 23.7 0.0 2.5 3 0 0 3 3 3 2 NAD synthase Peptidase_C26 PF07722.13 gi|218883790|ref|YP_002428172.1| - 5.6e-11 42.6 0.1 1.7e-10 41.1 0.1 1.9 1 1 0 1 1 1 1 Peptidase C26 ATP_bind_3 PF01171.20 gi|218883790|ref|YP_002428172.1| - 0.00033 20.5 0.0 0.00071 19.4 0.0 1.5 1 1 0 1 1 1 1 PP-loop family GATase_3 PF07685.14 gi|218883790|ref|YP_002428172.1| - 0.0017 18.0 0.0 0.0035 17.0 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain QueC PF06508.13 gi|218883790|ref|YP_002428172.1| - 0.0019 17.8 0.0 0.028 13.9 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC DJ-1_PfpI PF01965.24 gi|218883790|ref|YP_002428172.1| - 0.0039 17.0 0.0 0.012 15.4 0.0 1.8 2 0 0 2 2 2 1 DJ-1/PfpI family PALP PF00291.25 gi|218883791|ref|YP_002428173.1| - 1.7e-15 57.3 0.1 1.2e-07 31.5 0.1 3.0 1 1 1 2 2 2 2 Pyridoxal-phosphate dependent enzyme PadR PF03551.14 gi|218883791|ref|YP_002428173.1| - 0.0021 18.0 0.1 0.0049 16.8 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|218883791|ref|YP_002428173.1| - 0.0039 17.1 0.2 0.011 15.6 0.2 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|218883791|ref|YP_002428173.1| - 0.0051 16.7 0.0 0.016 15.1 0.0 1.9 1 0 0 1 1 1 1 HTH domain NRDD PF13597.6 gi|218883791|ref|YP_002428173.1| - 0.15 10.8 0.2 0.22 10.3 0.2 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DNA_ligase_ZBD PF03119.16 gi|218883791|ref|YP_002428173.1| - 0.22 11.6 1.5 2.3 8.3 0.0 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain SNO PF01174.19 gi|218883792|ref|YP_002428174.1| - 5.7e-49 166.5 0.0 6.3e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|218883792|ref|YP_002428174.1| - 2.6e-10 40.2 0.0 2.8e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|218883792|ref|YP_002428174.1| - 1.6e-07 31.3 0.0 3.1e-07 30.4 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|218883792|ref|YP_002428174.1| - 4.3e-06 26.6 0.0 6.2e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_S51 PF03575.17 gi|218883792|ref|YP_002428174.1| - 2.5e-05 24.0 0.0 3.4e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 ThiJ_like PF17124.5 gi|218883792|ref|YP_002428174.1| - 0.00047 19.9 0.0 0.00063 19.5 0.0 1.2 1 0 0 1 1 1 1 ThiJ/PfpI family-like GATase_5 PF13507.6 gi|218883792|ref|YP_002428174.1| - 0.056 12.5 0.0 0.14 11.2 0.0 1.6 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|218883792|ref|YP_002428174.1| - 0.13 12.0 0.1 1.3 8.7 0.1 2.5 1 1 0 1 1 1 0 Peptidase C26 SOR_SNZ PF01680.17 gi|218883793|ref|YP_002428175.1| - 1.4e-91 305.9 0.1 1.8e-91 305.5 0.1 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|218883793|ref|YP_002428175.1| - 6.1e-06 25.7 2.3 1.7e-05 24.3 0.0 2.3 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|218883793|ref|YP_002428175.1| - 0.00097 18.3 0.3 0.2 10.7 0.0 2.6 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|218883793|ref|YP_002428175.1| - 0.0024 17.1 0.1 0.53 9.4 0.0 2.4 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|218883793|ref|YP_002428175.1| - 0.0033 16.9 0.1 0.63 9.5 0.0 2.9 2 1 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|218883793|ref|YP_002428175.1| - 0.016 14.6 0.8 0.022 14.2 0.1 1.5 2 0 0 2 2 2 0 Nitronate monooxygenase IGPS PF00218.21 gi|218883793|ref|YP_002428175.1| - 0.037 13.2 0.0 0.58 9.3 0.0 2.3 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|218883793|ref|YP_002428175.1| - 0.065 12.8 0.0 1.3 8.5 0.0 2.2 1 1 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Trp_syntA PF00290.20 gi|218883793|ref|YP_002428175.1| - 0.076 11.9 0.0 0.16 10.8 0.0 1.5 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Carb_kinase PF01256.17 gi|218883795|ref|YP_002428177.1| - 2.1e-46 158.4 0.6 5e-44 150.6 0.0 2.1 2 0 0 2 2 2 2 Carbohydrate kinase YjeF_N PF03853.15 gi|218883795|ref|YP_002428177.1| - 2.6e-41 141.4 0.1 4.8e-41 140.5 0.1 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.12 gi|218883795|ref|YP_002428177.1| - 0.0076 15.7 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Tex_YqgF PF16921.5 gi|218883795|ref|YP_002428177.1| - 0.02 15.4 0.2 0.075 13.5 0.0 2.0 2 0 0 2 2 2 0 Tex protein YqgF-like domain TPP_enzyme_M PF00205.22 gi|218883795|ref|YP_002428177.1| - 0.065 13.0 0.0 2.2 8.0 0.0 2.8 2 1 1 3 3 3 0 Thiamine pyrophosphate enzyme, central domain N6_N4_Mtase PF01555.18 gi|218883796|ref|YP_002428178.1| - 4.4e-31 108.4 0.1 1.3e-16 61.0 0.0 2.1 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|218883796|ref|YP_002428178.1| - 2.5e-08 33.8 0.1 7.4e-07 29.0 0.1 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|218883796|ref|YP_002428178.1| - 4.3e-07 30.5 0.0 1.7e-05 25.4 0.0 2.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|218883796|ref|YP_002428178.1| - 9.6e-05 23.0 0.1 0.093 13.4 0.1 3.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|218883796|ref|YP_002428178.1| - 0.0049 16.7 0.0 0.51 10.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.16 gi|218883796|ref|YP_002428178.1| - 0.088 12.1 0.0 0.49 9.6 0.0 2.0 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_23 PF13489.6 gi|218883796|ref|YP_002428178.1| - 0.15 11.9 0.0 0.6 9.9 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|218883796|ref|YP_002428178.1| - 0.18 12.6 0.0 1.6 9.5 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain YorP PF09629.10 gi|218883797|ref|YP_002428179.1| - 0.086 13.1 0.0 0.14 12.3 0.0 1.4 1 1 0 1 1 1 0 YorP protein ABC_tran PF00005.27 gi|218883798|ref|YP_002428180.1| - 1.3e-21 77.6 0.0 2.3e-21 76.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883798|ref|YP_002428180.1| - 4e-10 40.0 0.4 3.5e-06 27.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MeaB PF03308.16 gi|218883798|ref|YP_002428180.1| - 0.051 12.5 0.1 0.083 11.9 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SMC_N PF02463.19 gi|218883798|ref|YP_002428180.1| - 0.07 12.6 0.7 6 6.2 0.4 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|218883798|ref|YP_002428180.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|218883799|ref|YP_002428181.1| - 4.5e-09 36.0 21.5 6.3e-09 35.5 21.5 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|218883799|ref|YP_002428181.1| - 3 7.8 23.6 0.016 15.1 13.4 2.4 2 1 0 2 2 2 0 ABC-2 family transporter protein AFOR_C PF01314.18 gi|218883801|ref|YP_002428183.1| - 5.8e-30 104.5 0.0 1.5e-29 103.2 0.0 1.6 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Metallophos_3 PF14582.6 gi|218883802|ref|YP_002428184.1| - 7.1e-14 51.7 0.1 1.9e-10 40.5 0.0 2.1 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.7 gi|218883802|ref|YP_002428184.1| - 3.7e-12 46.7 0.0 7.1e-12 45.8 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|218883802|ref|YP_002428184.1| - 2.6e-10 41.2 0.2 5.4e-10 40.1 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase ATP_bind_3 PF01171.20 gi|218883803|ref|YP_002428185.1| - 1e-16 61.2 0.0 8.6e-16 58.2 0.0 2.3 2 1 0 2 2 2 1 PP-loop family zn-ribbon_14 PF16503.5 gi|218883803|ref|YP_002428185.1| - 0.00039 19.9 1.6 0.00039 19.9 1.6 2.6 3 0 0 3 3 3 1 Zinc-ribbon PAPS_reduct PF01507.19 gi|218883803|ref|YP_002428185.1| - 0.0023 18.0 0.0 0.0039 17.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|218883803|ref|YP_002428185.1| - 0.0069 15.2 0.0 0.0099 14.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Phosphorylase PF00343.20 gi|218883803|ref|YP_002428185.1| - 0.065 11.5 0.0 0.097 10.9 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate phosphorylase CoA_binding_3 PF13727.6 gi|218883803|ref|YP_002428185.1| - 0.14 12.2 0.0 0.34 10.9 0.0 1.7 1 0 0 1 1 1 0 CoA-binding domain Flavoprotein PF02441.19 gi|218883803|ref|YP_002428185.1| - 0.15 11.8 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Flavoprotein E3_UbLigase_RBR PF18091.1 gi|218883803|ref|YP_002428185.1| - 0.37 10.9 1.9 2.2 8.5 0.1 2.7 3 0 0 3 3 3 0 E3 Ubiquitin Ligase RBR C-terminal domain Ribosomal_S14 PF00253.21 gi|218883803|ref|YP_002428185.1| - 2.7 7.8 7.1 13 5.7 0.1 3.1 3 0 0 3 3 3 0 Ribosomal protein S14p/S29e MacB_PCD PF12704.7 gi|218883804|ref|YP_002428186.1| - 3.4e-20 73.3 2.8 3.4e-20 73.3 2.8 2.0 2 1 1 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|218883804|ref|YP_002428186.1| - 3.9e-14 52.9 5.9 3.9e-14 52.9 5.9 3.1 3 0 0 3 3 3 1 FtsX-like permease family NPCBM_assoc PF10633.9 gi|218883805|ref|YP_002428187.1| - 1e-11 44.9 2.5 0.026 14.7 0.0 5.6 6 0 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase Gemini_mov PF01708.16 gi|218883805|ref|YP_002428187.1| - 0.024 14.4 0.3 0.053 13.3 0.3 1.5 1 0 0 1 1 1 0 Geminivirus putative movement protein Wzt_C PF14524.6 gi|218883805|ref|YP_002428187.1| - 0.085 12.9 0.1 11 6.1 0.0 2.9 2 0 0 2 2 2 0 Wzt C-terminal domain DUF11 PF01345.18 gi|218883805|ref|YP_002428187.1| - 2.9 8.2 17.7 7 7.0 0.1 5.7 6 1 0 6 6 6 0 Domain of unknown function DUF11 ABC_tran PF00005.27 gi|218883806|ref|YP_002428188.1| - 4.5e-35 121.1 0.0 5.6e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883806|ref|YP_002428188.1| - 2.1e-07 31.0 0.1 0.017 14.9 0.2 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|218883806|ref|YP_002428188.1| - 6.9e-05 22.8 0.2 0.00014 21.8 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|218883806|ref|YP_002428188.1| - 9.2e-05 22.1 0.2 0.00018 21.2 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|218883806|ref|YP_002428188.1| - 0.00021 20.8 0.1 0.25 10.8 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|218883806|ref|YP_002428188.1| - 0.00073 20.1 0.0 0.0013 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|218883806|ref|YP_002428188.1| - 0.0022 18.3 0.2 0.0062 16.8 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|218883806|ref|YP_002428188.1| - 0.0036 17.1 0.0 0.12 12.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|218883806|ref|YP_002428188.1| - 0.0039 17.6 0.1 0.0058 17.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|218883806|ref|YP_002428188.1| - 0.02 15.1 0.0 0.051 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|218883806|ref|YP_002428188.1| - 0.024 14.7 0.2 0.13 12.3 0.1 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|218883806|ref|YP_002428188.1| - 0.052 13.5 0.2 3.8 7.4 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|218883806|ref|YP_002428188.1| - 0.06 12.9 0.0 0.099 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|218883806|ref|YP_002428188.1| - 0.085 12.6 1.4 1.1 8.9 0.1 2.2 1 1 1 2 2 2 0 Cytidylate kinase AAA_24 PF13479.6 gi|218883806|ref|YP_002428188.1| - 0.09 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|218883806|ref|YP_002428188.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|218883806|ref|YP_002428188.1| - 0.14 11.7 0.1 0.23 11.0 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zot PF05707.12 gi|218883806|ref|YP_002428188.1| - 0.16 11.6 0.0 2.8 7.5 0.0 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) SbcCD_C PF13558.6 gi|218883806|ref|YP_002428188.1| - 0.2 11.9 0.1 3.1 8.1 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PadR PF03551.14 gi|218883807|ref|YP_002428189.1| - 1.2e-13 50.7 0.3 2.3e-13 49.9 0.3 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|218883807|ref|YP_002428189.1| - 5.6e-05 23.2 0.1 0.00011 22.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|218883807|ref|YP_002428189.1| - 0.0041 17.1 0.2 0.0087 16.0 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|218883807|ref|YP_002428189.1| - 0.0068 16.9 0.4 0.028 14.9 0.0 2.2 3 0 0 3 3 3 1 Winged helix DNA-binding domain YjcQ PF09639.10 gi|218883807|ref|YP_002428189.1| - 0.066 13.4 0.7 0.22 11.8 0.4 2.1 1 1 1 2 2 2 0 YjcQ protein DUF1495 PF07381.11 gi|218883807|ref|YP_002428189.1| - 0.085 12.7 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) ABC_tran PF00005.27 gi|218883808|ref|YP_002428190.1| - 1.7e-34 119.3 0.0 2.8e-34 118.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883808|ref|YP_002428190.1| - 1.2e-11 45.0 1.0 6.9e-07 29.4 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|218883808|ref|YP_002428190.1| - 2.4e-08 34.6 0.0 6.1e-08 33.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|218883808|ref|YP_002428190.1| - 2.6e-05 24.1 0.0 0.18 11.5 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|218883808|ref|YP_002428190.1| - 0.00027 20.5 0.0 0.0013 18.2 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|218883808|ref|YP_002428190.1| - 0.00036 21.1 0.8 0.00078 20.0 0.8 1.7 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|218883808|ref|YP_002428190.1| - 0.00096 18.8 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|218883808|ref|YP_002428190.1| - 0.00097 18.8 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|218883808|ref|YP_002428190.1| - 0.0025 18.3 0.1 0.086 13.3 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|218883808|ref|YP_002428190.1| - 0.017 15.1 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|218883808|ref|YP_002428190.1| - 0.024 14.4 0.3 4 7.1 0.1 3.0 2 1 1 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|218883808|ref|YP_002428190.1| - 0.038 13.7 0.0 0.072 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain T3RM_EcoP15I_C PF18273.1 gi|218883808|ref|YP_002428190.1| - 0.054 13.8 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 Type III R-M EcoP15I C-terminal domain NTPase_1 PF03266.15 gi|218883808|ref|YP_002428190.1| - 0.13 12.2 0.5 3.5 7.5 0.1 2.5 2 1 1 3 3 3 0 NTPase AAA_16 PF13191.6 gi|218883808|ref|YP_002428190.1| - 0.17 12.3 0.0 0.45 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|218883808|ref|YP_002428190.1| - 0.21 10.8 0.0 0.44 9.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ABC2_membrane PF01061.24 gi|218883809|ref|YP_002428191.1| - 9.2e-34 116.7 31.0 9.2e-34 116.7 31.0 2.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|218883809|ref|YP_002428191.1| - 3.3e-15 56.0 32.0 3.3e-15 56.0 32.0 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein AFOR_N PF02730.15 gi|218883810|ref|YP_002428192.1| - 3.6e-32 111.9 0.0 5e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|218883810|ref|YP_002428192.1| - 2.1e-15 56.6 0.0 6.1e-15 55.1 0.0 1.7 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Peptidase_M19 PF01244.21 gi|218883810|ref|YP_002428192.1| - 0.16 11.1 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) tRNA-synt_1d PF00750.19 gi|218883811|ref|YP_002428193.1| - 3.3e-28 98.7 2.1 7.7e-14 51.4 0.6 2.2 1 1 1 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|218883811|ref|YP_002428193.1| - 2.1e-14 53.7 2.3 3.3e-14 53.1 0.3 2.4 2 1 0 2 2 2 1 DALR anticodon binding domain Use1 PF09753.9 gi|218883811|ref|YP_002428193.1| - 0.0099 15.6 0.7 0.032 14.0 0.4 1.7 1 1 1 2 2 2 1 Membrane fusion protein Use1 tRNA-synt_1e PF01406.19 gi|218883811|ref|YP_002428193.1| - 0.011 15.1 1.2 0.042 13.2 0.0 2.3 2 1 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain Arg_tRNA_synt_N PF03485.16 gi|218883811|ref|YP_002428193.1| - 0.033 14.8 0.0 0.081 13.5 0.0 1.7 1 0 0 1 1 1 0 Arginyl tRNA synthetase N terminal domain Cep3 PF16846.5 gi|218883811|ref|YP_002428193.1| - 0.061 11.8 0.0 0.091 11.2 0.0 1.2 1 0 0 1 1 1 0 Centromere DNA-binding protein complex CBF3 subunit B DUF812 PF05667.11 gi|218883811|ref|YP_002428193.1| - 0.066 12.1 0.7 0.1 11.5 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) EamA PF00892.20 gi|218883812|ref|YP_002428194.1| - 4.8e-13 49.5 32.0 2.9e-08 34.0 11.9 2.2 2 0 0 2 2 2 2 EamA-like transporter family Cytomega_gL PF01801.16 gi|218883812|ref|YP_002428194.1| - 0.18 11.2 0.4 2.7 7.4 0.0 2.3 2 0 0 2 2 2 0 Cytomegalovirus glycoprotein L MoeA_N PF03453.17 gi|218883813|ref|YP_002428195.1| - 8.2e-45 152.4 1.3 1.2e-44 151.8 1.3 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|218883813|ref|YP_002428195.1| - 1.8e-20 73.0 0.0 3.3e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|218883813|ref|YP_002428195.1| - 2.1e-17 63.1 0.0 9.1e-17 61.0 0.0 2.2 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) ArsA_ATPase PF02374.15 gi|218883814|ref|YP_002428196.1| - 0.042 13.0 0.0 0.044 13.0 0.0 1.1 1 0 0 1 1 1 0 Anion-transporting ATPase CstA_5TM PF13722.6 gi|218883815|ref|YP_002428197.1| - 0.0085 16.5 0.0 0.01 16.2 0.0 1.0 1 0 0 1 1 1 1 5TM C-terminal transporter carbon starvation CstA HU-CCDC81_euk_2 PF18289.1 gi|218883816|ref|YP_002428198.1| - 0.033 14.3 0.0 0.044 13.9 0.0 1.2 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 Polysacc_synt PF01943.17 gi|218883817|ref|YP_002428199.1| - 2.3e-18 66.6 29.3 2.3e-18 66.6 29.3 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|218883817|ref|YP_002428199.1| - 8.9e-10 38.2 17.8 8.9e-10 38.2 17.8 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein OrfB_Zn_ribbon PF07282.11 gi|218883818|ref|YP_002428200.1| - 0.0084 16.0 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain T2SSF PF00482.23 gi|218883820|ref|YP_002428202.1| - 0.00076 19.4 0.1 0.00076 19.4 0.1 3.3 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Nitroreductase PF00881.24 gi|218883821|ref|YP_002428203.1| - 6.6e-26 91.4 0.0 8e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|218883821|ref|YP_002428203.1| - 0.018 14.6 0.0 1.6 8.2 0.0 2.1 2 0 0 2 2 2 0 Putative TM nitroreductase SpoVAB PF13782.6 gi|218883822|ref|YP_002428204.1| - 0.022 15.0 0.3 0.035 14.4 0.3 1.4 1 1 0 1 1 1 0 Stage V sporulation protein AB TMEM100 PF16311.5 gi|218883823|ref|YP_002428205.1| - 0.067 12.8 0.9 0.68 9.5 0.1 2.0 2 0 0 2 2 2 0 Transmembrane protein 100 Sen15 PF09631.10 gi|218883823|ref|YP_002428205.1| - 0.16 12.3 0.4 2.1 8.7 0.2 2.0 1 1 1 2 2 2 0 Sen15 protein DUF202 PF02656.15 gi|218883823|ref|YP_002428205.1| - 2 8.9 6.2 0.9 10.0 1.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF202) YwcE PF17368.2 gi|218883823|ref|YP_002428205.1| - 2.7 8.7 7.6 2 9.1 1.8 2.0 1 1 1 2 2 2 0 Spore morphogenesis and germination YwcE Fer4_15 PF13459.6 gi|218883825|ref|YP_002428207.1| - 9.6e-15 55.1 1.4 1.2e-14 54.8 1.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|218883825|ref|YP_002428207.1| - 5.4e-13 49.3 1.2 6.7e-13 49.0 1.2 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|218883825|ref|YP_002428207.1| - 0.0003 20.5 3.1 0.12 12.2 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|218883825|ref|YP_002428207.1| - 0.023 14.8 2.4 0.3 11.2 3.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|218883825|ref|YP_002428207.1| - 0.038 14.1 4.8 0.5 10.5 4.8 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218883825|ref|YP_002428207.1| - 0.06 13.5 5.3 0.21 11.7 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|218883825|ref|YP_002428207.1| - 0.1 12.8 0.5 0.1 12.8 0.5 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain DUF1385 PF07136.11 gi|218883826|ref|YP_002428208.1| - 0.046 13.0 0.1 0.049 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1385) DUF2374 PF09574.10 gi|218883826|ref|YP_002428208.1| - 0.24 11.3 0.1 0.24 11.3 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (Duf2374) DUF2070 PF09843.9 gi|218883827|ref|YP_002428209.1| - 5.2 5.2 14.3 6.1 5.0 14.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Pyr_redox_2 PF07992.14 gi|218883828|ref|YP_002428210.1| - 1.3e-13 50.8 0.1 2.7e-05 23.6 0.1 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|218883828|ref|YP_002428210.1| - 4.5e-12 45.4 0.0 2.5e-06 26.5 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|218883828|ref|YP_002428210.1| - 1.1e-09 38.0 0.0 0.00085 18.7 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|218883828|ref|YP_002428210.1| - 2.8e-09 37.0 0.1 8.5e-06 25.6 0.1 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|218883828|ref|YP_002428210.1| - 5e-08 32.4 0.4 0.0037 16.4 0.0 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|218883828|ref|YP_002428210.1| - 8.9e-07 28.3 0.0 6.1e-05 22.3 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|218883828|ref|YP_002428210.1| - 4.4e-06 26.8 0.1 1.9e-05 24.8 0.1 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|218883828|ref|YP_002428210.1| - 1.4e-05 24.4 0.0 0.00022 20.5 0.0 2.3 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|218883828|ref|YP_002428210.1| - 0.00023 20.5 0.0 0.00046 19.5 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|218883828|ref|YP_002428210.1| - 0.00044 19.4 0.0 0.00065 18.8 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|218883828|ref|YP_002428210.1| - 0.00055 20.5 0.1 1.5 9.4 0.0 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|218883828|ref|YP_002428210.1| - 0.0016 18.4 0.0 0.15 12.1 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|218883828|ref|YP_002428210.1| - 0.0045 16.4 0.0 0.032 13.6 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|218883828|ref|YP_002428210.1| - 0.0056 15.6 0.0 0.0082 15.0 0.0 1.2 1 0 0 1 1 1 1 Tryptophan halogenase Amino_oxidase PF01593.24 gi|218883828|ref|YP_002428210.1| - 0.013 14.8 0.1 0.26 10.5 0.0 2.4 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase MCRA PF06100.11 gi|218883828|ref|YP_002428210.1| - 0.23 10.2 0.1 0.42 9.4 0.0 1.5 2 0 0 2 2 2 0 MCRA family Adenylsucc_synt PF00709.21 gi|218883829|ref|YP_002428211.1| - 8.8e-69 232.4 0.5 2e-35 122.5 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Dak1_2 PF13684.6 gi|218883829|ref|YP_002428211.1| - 0.058 12.5 0.0 0.34 10.0 0.0 1.9 2 0 0 2 2 2 0 Dihydroxyacetone kinase family SAICAR_synt PF01259.18 gi|218883830|ref|YP_002428212.1| - 9.2e-53 179.4 0.0 1.1e-52 179.1 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.14 gi|218883831|ref|YP_002428213.1| - 4.2e-21 74.9 0.1 4.5e-21 74.8 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 gi|218883832|ref|YP_002428214.1| - 6e-46 156.6 0.0 9.8e-46 155.9 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|218883832|ref|YP_002428214.1| - 6.3e-09 35.9 0.0 7.7e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|218883832|ref|YP_002428214.1| - 7e-08 32.4 0.0 1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|218883832|ref|YP_002428214.1| - 1.6e-07 31.1 0.0 2.3e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|218883832|ref|YP_002428214.1| - 0.0038 17.0 0.0 0.0053 16.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|218883832|ref|YP_002428214.1| - 0.011 15.6 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family AIRS_C PF02769.22 gi|218883833|ref|YP_002428215.1| - 1.5e-44 151.8 0.2 7.2e-24 84.7 0.0 2.5 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|218883833|ref|YP_002428215.1| - 1.1e-41 141.4 0.0 5e-22 78.4 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|218883833|ref|YP_002428215.1| - 1.4e-11 44.7 0.3 3.1e-11 43.6 0.3 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain Tegument_dsDNA PF12818.7 gi|218883833|ref|YP_002428215.1| - 0.01 15.0 0.0 0.62 9.2 0.0 2.3 2 0 0 2 2 2 0 dsDNA viral tegument protein GATase_6 PF13522.6 gi|218883834|ref|YP_002428216.1| - 1.9e-12 47.5 0.0 3.3e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|218883834|ref|YP_002428216.1| - 1.6e-11 44.2 0.0 2.6e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|218883834|ref|YP_002428216.1| - 8.9e-07 28.6 0.1 1.6e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyltran PF00156.27 gi|218883835|ref|YP_002428217.1| - 9.1e-14 51.3 0.1 1.8e-13 50.3 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|218883835|ref|YP_002428217.1| - 0.00063 19.3 0.0 0.0012 18.3 0.0 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase GARS_A PF01071.19 gi|218883836|ref|YP_002428218.1| - 3.9e-38 131.2 0.0 5.7e-38 130.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|218883836|ref|YP_002428218.1| - 6.4e-21 74.9 0.0 1.2e-20 74.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|218883836|ref|YP_002428218.1| - 1.2e-07 31.9 0.0 3.6e-07 30.4 0.0 1.8 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_ST PF14397.6 gi|218883836|ref|YP_002428218.1| - 0.011 15.0 0.0 0.016 14.4 0.0 1.2 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 gi|218883836|ref|YP_002428218.1| - 0.033 13.6 0.0 0.074 12.4 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.6 gi|218883836|ref|YP_002428218.1| - 0.034 13.7 0.0 0.059 13.0 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|218883836|ref|YP_002428218.1| - 0.047 13.7 0.0 0.15 12.1 0.0 1.8 1 1 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|218883836|ref|YP_002428218.1| - 0.063 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|218883837|ref|YP_002428219.1| - 1.3e-38 132.3 0.0 1.9e-38 131.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|218883837|ref|YP_002428219.1| - 6e-09 35.7 0.0 1e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|218883837|ref|YP_002428219.1| - 6e-08 32.4 0.0 1.7e-07 31.0 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Epimerase PF01370.21 gi|218883837|ref|YP_002428219.1| - 0.00029 20.4 0.0 0.00042 19.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ATPgrasp_ST PF14397.6 gi|218883837|ref|YP_002428219.1| - 0.00035 19.9 0.0 0.0093 15.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.6 gi|218883837|ref|YP_002428219.1| - 0.00054 19.5 0.0 0.00095 18.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|218883837|ref|YP_002428219.1| - 0.001 18.9 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 2-Hacid_dh_C PF02826.19 gi|218883837|ref|YP_002428219.1| - 0.0036 16.7 0.0 0.0072 15.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_4 PF13535.6 gi|218883837|ref|YP_002428219.1| - 0.014 15.0 0.0 0.04 13.5 0.0 1.9 1 1 0 1 1 1 0 ATP-grasp domain Pyr_redox PF00070.27 gi|218883837|ref|YP_002428219.1| - 0.016 15.8 0.2 0.81 10.3 0.1 2.6 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.17 gi|218883837|ref|YP_002428219.1| - 0.022 13.9 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain LAL_C2 PF18603.1 gi|218883837|ref|YP_002428219.1| - 0.036 14.2 1.2 0.51 10.5 0.1 3.0 4 0 0 4 4 4 0 L-amino acid ligase C-terminal domain 2 Pyr_redox_2 PF07992.14 gi|218883837|ref|YP_002428219.1| - 0.054 12.7 0.2 0.19 10.9 0.2 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|218883837|ref|YP_002428219.1| - 0.057 13.3 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AIRC PF00731.20 gi|218883838|ref|YP_002428220.1| - 9.5e-50 168.0 0.2 1.1e-49 167.8 0.2 1.0 1 0 0 1 1 1 1 AIR carboxylase PrpR_N PF06506.11 gi|218883838|ref|YP_002428220.1| - 0.0021 17.7 0.1 0.0027 17.3 0.1 1.2 1 0 0 1 1 1 1 Propionate catabolism activator AIRS_C PF02769.22 gi|218883839|ref|YP_002428221.1| - 4.5e-22 78.9 0.0 6.7e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|218883839|ref|YP_002428221.1| - 4.4e-17 62.5 0.6 5.4e-16 59.0 0.2 2.4 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain DUF1297 PF06973.12 gi|218883840|ref|YP_002428222.1| - 1.6e-80 269.1 0.2 2.2e-80 268.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|218883840|ref|YP_002428222.1| - 1.1e-46 157.8 0.1 2.1e-46 156.9 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1246) Lyase_1 PF00206.20 gi|218883841|ref|YP_002428223.1| - 2.8e-39 135.4 0.0 3.7e-39 134.9 0.0 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|218883841|ref|YP_002428223.1| - 1.9e-14 53.9 0.0 4.2e-14 52.8 0.0 1.6 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|218883841|ref|YP_002428223.1| - 4.5e-06 26.7 0.2 5.6e-05 23.2 0.1 2.4 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal DUF1297 PF06973.12 gi|218883842|ref|YP_002428224.1| - 1.5e-74 249.6 0.0 1.9e-74 249.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|218883842|ref|YP_002428224.1| - 1.4e-44 150.9 0.0 2e-44 150.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) CPSase_L_D2 PF02786.17 gi|218883842|ref|YP_002428224.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|218883842|ref|YP_002428224.1| - 0.18 11.5 0.0 3.5 7.3 0.0 2.2 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Pribosyltran PF00156.27 gi|218883843|ref|YP_002428225.1| - 2.1e-13 50.1 0.1 3.4e-13 49.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|218883843|ref|YP_002428225.1| - 0.00012 21.6 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|218883843|ref|YP_002428225.1| - 0.0072 15.8 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase POR PF01558.18 gi|218883844|ref|YP_002428226.1| - 3.4e-26 92.4 0.0 4.2e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|218883845|ref|YP_002428227.1| - 8.4e-31 106.8 0.8 2.7e-30 105.2 0.2 1.8 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|218883846|ref|YP_002428228.1| - 5.1e-67 226.0 0.1 6.8e-67 225.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|218883846|ref|YP_002428228.1| - 1e-15 57.9 0.1 1.9e-15 57.0 0.1 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|218883846|ref|YP_002428228.1| - 2.8e-10 40.1 0.0 7e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|218883846|ref|YP_002428228.1| - 0.0083 15.8 0.1 0.015 14.9 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.7 gi|218883847|ref|YP_002428229.1| - 5e-12 46.2 32.6 8.3e-08 32.7 11.3 1.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|218883847|ref|YP_002428229.1| - 2.8e-11 42.7 14.6 8.2e-06 25.4 5.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|218883847|ref|YP_002428229.1| - 8.4e-10 38.7 17.6 1.4e-07 31.5 8.2 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218883847|ref|YP_002428229.1| - 1.2e-09 37.8 14.1 4.9e-05 23.2 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|218883847|ref|YP_002428229.1| - 3.4e-09 36.3 14.0 2.2e-05 24.3 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|218883847|ref|YP_002428229.1| - 5.6e-09 36.0 6.6 0.00011 22.2 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|218883847|ref|YP_002428229.1| - 5e-08 33.3 4.6 0.0022 18.4 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|218883847|ref|YP_002428229.1| - 3.5e-07 30.2 11.9 0.0012 19.1 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|218883847|ref|YP_002428229.1| - 1.6e-06 28.1 10.9 2.9e-06 27.3 10.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|218883847|ref|YP_002428229.1| - 4.6e-06 27.5 11.9 0.00046 21.1 2.5 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|218883847|ref|YP_002428229.1| - 8.3e-06 26.3 11.1 0.00016 22.1 12.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|218883847|ref|YP_002428229.1| - 0.00032 20.9 4.0 0.0029 17.8 0.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|218883847|ref|YP_002428229.1| - 0.0032 18.3 14.6 0.22 12.6 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|218883847|ref|YP_002428229.1| - 0.0048 17.4 11.4 0.11 13.0 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|218883847|ref|YP_002428229.1| - 0.0094 16.8 9.8 0.2 12.5 0.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|218883847|ref|YP_002428229.1| - 0.12 13.1 8.2 2.6 8.8 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Lactamase_B_2 PF12706.7 gi|218883849|ref|YP_002428231.1| - 4e-23 82.0 0.0 4.9e-23 81.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|218883849|ref|YP_002428231.1| - 1.3e-11 44.8 0.0 2e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|218883849|ref|YP_002428231.1| - 5.5e-11 42.0 0.0 1e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease Lactamase_B_3 PF13483.6 gi|218883849|ref|YP_002428231.1| - 0.024 14.5 0.2 0.088 12.7 0.2 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain UPF0020 PF01170.18 gi|218883850|ref|YP_002428232.1| - 1.4e-18 67.4 0.0 3e-17 62.9 0.0 2.5 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|218883850|ref|YP_002428232.1| - 6.9e-07 29.2 0.0 0.00033 20.4 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.15 gi|218883850|ref|YP_002428232.1| - 6.3e-06 26.0 0.0 1.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|218883850|ref|YP_002428232.1| - 0.011 15.0 0.0 0.029 13.6 0.0 1.7 1 1 0 1 1 1 0 N-6 DNA Methylase MethyltransfD12 PF02086.15 gi|218883850|ref|YP_002428232.1| - 0.075 12.7 0.0 2.7 7.6 0.0 2.2 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Pribosyltran_N PF13793.6 gi|218883851|ref|YP_002428233.1| - 1.4e-22 79.8 0.0 3.5e-21 75.3 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|218883851|ref|YP_002428233.1| - 4.1e-15 55.7 1.6 3.5e-14 52.6 1.0 2.3 1 1 1 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|218883851|ref|YP_002428233.1| - 2.3e-11 44.1 0.6 4.6e-11 43.1 0.6 1.5 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|218883851|ref|YP_002428233.1| - 0.00046 19.7 0.1 0.00087 18.8 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|218883851|ref|YP_002428233.1| - 0.014 14.9 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Radical_SAM PF04055.21 gi|218883852|ref|YP_002428234.1| - 2.5e-20 73.5 0.0 2.3e-19 70.4 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily zf-ribbon_3 PF13248.6 gi|218883852|ref|YP_002428234.1| - 0.00048 19.4 2.3 0.37 10.3 0.1 2.8 2 0 0 2 2 2 2 zinc-ribbon domain Fer4_12 PF13353.6 gi|218883852|ref|YP_002428234.1| - 0.003 17.8 0.0 0.0057 16.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DNA_ligase_ZBD PF03119.16 gi|218883852|ref|YP_002428234.1| - 0.014 15.4 0.2 0.92 9.6 0.0 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C4_Topoisom PF01396.19 gi|218883852|ref|YP_002428234.1| - 0.018 14.8 5.6 0.69 9.7 0.0 3.5 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.12 gi|218883852|ref|YP_002428234.1| - 0.018 14.5 5.1 0.16 11.6 0.0 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding DZR PF12773.7 gi|218883852|ref|YP_002428234.1| - 0.032 14.3 0.0 0.032 14.3 0.0 2.6 3 0 0 3 3 3 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|218883852|ref|YP_002428234.1| - 0.047 13.6 0.1 0.13 12.2 0.1 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain VP_N-CPKC PF11475.8 gi|218883852|ref|YP_002428234.1| - 0.06 13.2 1.8 0.56 10.2 0.1 2.7 2 0 0 2 2 2 0 Virion protein N terminal domain IBR PF01485.21 gi|218883852|ref|YP_002428234.1| - 0.16 12.2 0.1 0.16 12.2 0.1 2.0 3 0 0 3 3 2 0 IBR domain, a half RING-finger domain zf-ISL3 PF14690.6 gi|218883852|ref|YP_002428234.1| - 0.18 12.5 0.0 0.18 12.5 0.0 3.1 2 1 1 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 gi|218883852|ref|YP_002428234.1| - 0.2 11.7 0.1 0.2 11.7 0.1 3.8 4 0 0 4 4 4 0 Transposase zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|218883852|ref|YP_002428234.1| - 0.22 11.1 2.6 0.45 10.1 0.3 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-ACC PF17848.1 gi|218883852|ref|YP_002428234.1| - 0.22 11.6 2.6 12 6.1 0.1 2.7 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_2 PF13240.6 gi|218883852|ref|YP_002428234.1| - 0.34 10.7 10.2 1.4 8.8 0.1 3.0 3 0 0 3 3 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|218883852|ref|YP_002428234.1| - 1.8 8.8 0.0 1.8 8.8 0.0 3.4 4 0 0 4 4 3 0 Zinc ribbon domain DpnI PF06044.12 gi|218883852|ref|YP_002428234.1| - 4.3 6.9 5.8 5.2 6.7 0.4 2.7 2 2 0 2 2 2 0 Dam-replacing family Mu-like_Com PF10122.9 gi|218883852|ref|YP_002428234.1| - 5.7 6.5 9.4 12 5.5 0.1 3.2 3 0 0 3 3 3 0 Mu-like prophage protein Com ATP_bind_1 PF03029.17 gi|218883853|ref|YP_002428235.1| - 6.8e-62 209.4 0.0 7.7e-62 209.2 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|218883853|ref|YP_002428235.1| - 0.00052 19.6 0.0 0.011 15.3 0.0 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain CLP1_P PF16575.5 gi|218883853|ref|YP_002428235.1| - 0.0013 18.5 0.0 0.045 13.5 0.0 2.2 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_18 PF13238.6 gi|218883853|ref|YP_002428235.1| - 0.0014 19.2 0.0 0.0035 17.9 0.0 1.8 2 1 0 2 2 1 1 AAA domain CbiA PF01656.23 gi|218883853|ref|YP_002428235.1| - 0.0021 18.1 0.0 0.0026 17.8 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.6 gi|218883853|ref|YP_002428235.1| - 0.0024 18.3 0.0 0.0074 16.7 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain FeoB_N PF02421.18 gi|218883853|ref|YP_002428235.1| - 0.0058 16.2 0.4 0.78 9.3 0.1 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B MMR_HSR1 PF01926.23 gi|218883853|ref|YP_002428235.1| - 0.015 15.4 0.0 0.061 13.4 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|218883853|ref|YP_002428235.1| - 0.021 14.4 0.0 0.19 11.3 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ArsA_ATPase PF02374.15 gi|218883853|ref|YP_002428235.1| - 0.024 13.8 0.2 0.11 11.6 0.0 2.0 2 1 0 2 2 2 0 Anion-transporting ATPase AAA_24 PF13479.6 gi|218883853|ref|YP_002428235.1| - 0.025 14.3 0.0 0.036 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|218883853|ref|YP_002428235.1| - 0.028 14.2 0.1 0.87 9.3 0.0 2.9 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation PhoH PF02562.16 gi|218883853|ref|YP_002428235.1| - 0.033 13.6 0.0 0.14 11.6 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein cobW PF02492.19 gi|218883853|ref|YP_002428235.1| - 0.035 13.7 0.1 0.13 11.8 0.1 2.1 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Med22 PF06179.12 gi|218883853|ref|YP_002428235.1| - 0.036 14.3 0.2 0.095 12.9 0.1 1.7 2 0 0 2 2 1 0 Surfeit locus protein 5 subunit 22 of Mediator complex KTI12 PF08433.10 gi|218883853|ref|YP_002428235.1| - 0.039 13.4 0.0 0.1 12.0 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Gtr1_RagA PF04670.12 gi|218883853|ref|YP_002428235.1| - 0.044 13.1 0.1 0.2 11.0 0.1 2.0 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|218883853|ref|YP_002428235.1| - 0.048 13.7 1.8 1.9 8.5 0.0 2.5 3 0 0 3 3 3 0 Dynamin family NACHT PF05729.12 gi|218883853|ref|YP_002428235.1| - 0.052 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain T2SSE PF00437.20 gi|218883853|ref|YP_002428235.1| - 0.064 12.3 0.0 0.19 10.8 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|218883853|ref|YP_002428235.1| - 0.08 13.2 0.1 0.19 12.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|218883853|ref|YP_002428235.1| - 0.098 12.1 0.0 0.31 10.5 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MeaB PF03308.16 gi|218883853|ref|YP_002428235.1| - 0.098 11.6 0.0 0.43 9.5 0.0 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|218883853|ref|YP_002428235.1| - 0.1 12.5 0.1 8 6.3 0.0 2.9 3 0 0 3 3 3 0 RsgA GTPase DUF87 PF01935.17 gi|218883853|ref|YP_002428235.1| - 0.1 12.6 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|218883853|ref|YP_002428235.1| - 0.11 11.8 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin HisG PF01634.18 gi|218883853|ref|YP_002428235.1| - 0.12 12.4 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 ATP phosphoribosyltransferase MobB PF03205.14 gi|218883853|ref|YP_002428235.1| - 0.17 11.8 0.0 0.6 10.0 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B HAD_2 PF13419.6 gi|218883854|ref|YP_002428236.1| - 3.9e-08 33.6 0.3 1.2e-07 32.0 0.3 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|218883854|ref|YP_002428236.1| - 7.8e-07 29.6 0.0 0.0016 18.8 0.0 2.3 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|218883854|ref|YP_002428236.1| - 1.4e-06 28.8 0.0 2.9e-06 27.8 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|218883854|ref|YP_002428236.1| - 1.3e-05 25.1 0.7 0.001 18.9 0.1 2.6 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|218883854|ref|YP_002428236.1| - 0.00019 21.2 3.6 0.002 17.9 3.6 2.0 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Plk4_PB1 PF18190.1 gi|218883854|ref|YP_002428236.1| - 0.015 15.4 0.0 0.028 14.6 0.0 1.5 1 0 0 1 1 1 0 Polo-like Kinase 4 Polo Box 1 Trp_syntA PF00290.20 gi|218883854|ref|YP_002428236.1| - 0.022 13.6 0.0 0.032 13.1 0.0 1.2 1 0 0 1 1 1 0 Tryptophan synthase alpha chain DUF2072 PF09845.9 gi|218883854|ref|YP_002428236.1| - 0.038 14.2 0.0 0.056 13.7 0.0 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein Asparaginase_2 PF01112.18 gi|218883855|ref|YP_002428237.1| - 1.6e-71 240.8 0.0 1.9e-71 240.6 0.0 1.0 1 0 0 1 1 1 1 Asparaginase NolB PF17398.2 gi|218883855|ref|YP_002428237.1| - 0.19 12.1 0.1 0.33 11.3 0.1 1.3 1 0 0 1 1 1 0 Nodulation protein NolB DUF4234 PF14018.6 gi|218883856|ref|YP_002428238.1| - 0.0029 17.7 0.1 0.0029 17.7 0.1 3.7 4 1 0 4 4 4 1 Domain of unknown function (DUF4234) DUF3185 PF11381.8 gi|218883856|ref|YP_002428238.1| - 0.27 11.3 6.6 4.1 7.5 0.8 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) SHR3_chaperone PF08229.11 gi|218883856|ref|YP_002428238.1| - 1.8 7.5 11.4 2.3 7.1 6.7 3.2 2 1 0 2 2 2 0 ER membrane protein SH3 ROK PF00480.20 gi|218883857|ref|YP_002428239.1| - 2.1e-59 201.4 0.0 2.9e-59 201.0 0.0 1.1 1 0 0 1 1 1 1 ROK family Glucokinase PF02685.16 gi|218883857|ref|YP_002428239.1| - 0.00013 21.1 0.0 0.4 9.6 0.0 2.2 2 0 0 2 2 2 2 Glucokinase tRNA-synt_1g PF09334.11 gi|218883858|ref|YP_002428240.1| - 3.9e-94 315.6 4.2 1.6e-51 175.3 0.2 2.1 1 1 1 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|218883858|ref|YP_002428240.1| - 4.6e-29 101.1 3.5 1.2e-13 50.3 0.5 3.9 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|218883858|ref|YP_002428240.1| - 3.1e-09 36.6 0.2 0.00062 19.2 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|218883858|ref|YP_002428240.1| - 9.9e-09 35.3 0.0 2.2e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|218883858|ref|YP_002428240.1| - 8.7e-05 21.6 1.8 0.0011 18.0 0.0 2.7 3 1 0 3 3 3 1 tRNA synthetases class I (K) LIM PF00412.22 gi|218883858|ref|YP_002428240.1| - 0.12 12.6 0.2 0.25 11.6 0.2 1.5 1 0 0 1 1 1 0 LIM domain Radical_SAM PF04055.21 gi|218883859|ref|YP_002428241.1| - 5.2e-16 59.5 0.0 2.3e-15 57.4 0.0 2.2 2 2 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|218883859|ref|YP_002428241.1| - 0.0035 17.4 0.0 0.16 12.0 0.0 2.4 2 0 0 2 2 2 1 B12 binding domain MarR_2 PF12802.7 gi|218883861|ref|YP_002428243.1| - 3.5e-08 33.2 0.3 1e-07 31.7 0.0 1.8 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|218883861|ref|YP_002428243.1| - 7.1e-07 29.0 0.5 1.5e-06 28.0 0.2 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|218883861|ref|YP_002428243.1| - 1.3e-06 28.1 0.2 2.9e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|218883861|ref|YP_002428243.1| - 1.9e-05 24.7 1.3 0.00024 21.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|218883861|ref|YP_002428243.1| - 7.5e-05 22.2 2.4 0.00013 21.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|218883861|ref|YP_002428243.1| - 8.9e-05 22.3 0.7 0.0029 17.4 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|218883861|ref|YP_002428243.1| - 0.00049 20.5 0.4 0.0018 18.7 0.1 2.0 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|218883861|ref|YP_002428243.1| - 0.00077 19.6 0.4 0.0016 18.6 0.2 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|218883861|ref|YP_002428243.1| - 0.0041 17.1 0.2 0.0085 16.1 0.2 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain tRNA-synt_His PF13393.6 gi|218883861|ref|YP_002428243.1| - 0.0077 15.5 0.5 0.0093 15.3 0.5 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase Cdc6_C PF09079.11 gi|218883861|ref|YP_002428243.1| - 0.049 13.6 0.2 0.083 12.9 0.2 1.4 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain Rrf2 PF02082.20 gi|218883861|ref|YP_002428243.1| - 0.066 13.6 1.0 0.28 11.6 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator Stn1_C PF12659.7 gi|218883861|ref|YP_002428243.1| - 0.078 12.9 0.2 0.11 12.5 0.2 1.2 1 0 0 1 1 1 0 Telomere capping C-terminal wHTH HTH_36 PF13730.6 gi|218883861|ref|YP_002428243.1| - 0.085 12.8 1.2 0.45 10.5 0.2 2.5 2 1 1 3 3 3 0 Helix-turn-helix domain DGC PF08859.11 gi|218883863|ref|YP_002428245.1| - 6.2e-30 103.4 0.8 8e-30 103.1 0.8 1.1 1 0 0 1 1 1 1 DGC domain BAAT_C PF08840.11 gi|218883863|ref|YP_002428245.1| - 0.016 15.1 0.0 0.032 14.1 0.0 1.5 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DinI PF06183.13 gi|218883863|ref|YP_002428245.1| - 0.066 13.6 0.0 4.6 7.7 0.0 2.3 2 1 0 2 2 2 0 DinI-like family Nitro_FeMo-Co PF02579.17 gi|218883864|ref|YP_002428246.1| - 6.8e-20 71.2 0.0 1e-19 70.6 0.0 1.3 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor PDH PF02153.17 gi|218883864|ref|YP_002428246.1| - 0.058 12.4 0.0 0.089 11.8 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase DUF5320 PF17253.2 gi|218883865|ref|YP_002428247.1| - 2.7e-05 25.2 0.0 3.3e-05 24.9 0.0 1.2 1 1 0 1 1 1 1 Family of unknown function (DUF5320) DUF134 PF02001.16 gi|218883866|ref|YP_002428248.1| - 0.099 13.2 0.0 0.12 13.0 0.0 1.2 1 1 0 1 1 1 0 Protein of unknown function DUF134 Resolvase PF00239.21 gi|218883867|ref|YP_002428249.1| - 7.2e-24 84.6 0.5 1.3e-23 83.7 0.4 1.5 1 1 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|218883867|ref|YP_002428249.1| - 7.4e-15 54.9 0.4 1.6e-14 53.8 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|218883867|ref|YP_002428249.1| - 1e-06 28.4 0.5 1e-06 28.4 0.5 2.1 3 0 0 3 3 2 1 MerR family regulatory protein HTH_23 PF13384.6 gi|218883867|ref|YP_002428249.1| - 1.5e-05 24.6 0.3 3.4e-05 23.5 0.2 1.8 1 1 0 1 1 1 1 Homeodomain-like domain MerR_1 PF13411.6 gi|218883867|ref|YP_002428249.1| - 8.6e-05 22.6 0.1 0.00019 21.5 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_Tnp_1 PF01527.20 gi|218883867|ref|YP_002428249.1| - 0.00018 21.8 0.3 0.00055 20.2 0.0 2.0 2 0 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|218883867|ref|YP_002428249.1| - 0.00022 21.2 0.2 0.00053 20.0 0.1 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|218883867|ref|YP_002428249.1| - 0.0006 19.9 0.1 0.0016 18.5 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain AbiEi_4 PF13338.6 gi|218883867|ref|YP_002428249.1| - 0.00098 19.2 0.2 0.002 18.2 0.2 1.6 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_3 PF01381.22 gi|218883867|ref|YP_002428249.1| - 0.0012 18.8 0.0 0.0042 17.1 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix Exc PF07825.11 gi|218883867|ref|YP_002428249.1| - 0.0013 18.7 0.3 0.0021 18.0 0.3 1.3 1 0 0 1 1 1 1 Excisionase-like protein Phage_AlpA PF05930.12 gi|218883867|ref|YP_002428249.1| - 0.0046 16.7 0.0 0.0087 15.9 0.0 1.4 1 0 0 1 1 1 1 Prophage CP4-57 regulatory protein (AlpA) HTH_31 PF13560.6 gi|218883867|ref|YP_002428249.1| - 0.011 16.1 0.8 0.17 12.3 0.2 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|218883867|ref|YP_002428249.1| - 0.021 14.2 0.0 0.22 10.9 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MerR_2 PF13591.6 gi|218883867|ref|YP_002428249.1| - 0.025 14.4 0.0 0.072 13.0 0.0 1.8 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_26 PF13443.6 gi|218883867|ref|YP_002428249.1| - 0.035 14.6 0.0 0.091 13.2 0.0 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF1323 PF07037.11 gi|218883867|ref|YP_002428249.1| - 0.055 13.9 0.1 0.094 13.1 0.1 1.5 1 1 0 1 1 1 0 Putative transcription regulator (DUF1323) Helicase_C PF00271.31 gi|218883867|ref|YP_002428249.1| - 0.11 12.8 0.0 1.2 9.5 0.0 2.3 2 1 0 2 2 2 0 Helicase conserved C-terminal domain Phage_CI_repr PF07022.13 gi|218883867|ref|YP_002428249.1| - 0.12 12.4 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain CENP-B_N PF04218.13 gi|218883867|ref|YP_002428249.1| - 0.18 11.5 0.5 1.3 8.7 0.0 2.4 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain Apo-CIII PF05778.12 gi|218883868|ref|YP_002428250.1| - 0.18 11.4 0.2 0.42 10.3 0.2 1.6 1 0 0 1 1 1 0 Apolipoprotein CIII (Apo-CIII) DUF4342 PF14242.6 gi|218883870|ref|YP_002428252.1| - 0.16 12.0 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4342) Sigma70_r1_1 PF03979.14 gi|218883871|ref|YP_002428253.1| - 0.09 12.8 0.2 2.4 8.3 0.1 2.6 2 1 0 2 2 2 0 Sigma-70 factor, region 1.1 CRA PF06589.11 gi|218883871|ref|YP_002428253.1| - 0.12 12.5 1.1 0.37 10.9 0.0 2.0 2 0 0 2 2 2 0 Circumsporozoite-related antigen (CRA) TraC PF07820.12 gi|218883872|ref|YP_002428254.1| - 0.12 12.8 1.0 9.8 6.6 0.1 3.2 3 0 0 3 3 3 0 TraC-like protein FliG_N PF14842.6 gi|218883872|ref|YP_002428254.1| - 0.12 13.0 3.8 1.7 9.2 0.1 4.0 3 1 0 3 3 3 0 FliG N-terminal domain DUF1156 PF06634.12 gi|218883873|ref|YP_002428255.1| - 3.5e-05 23.8 0.0 7.9e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) UPF0020 PF01170.18 gi|218883873|ref|YP_002428255.1| - 0.00026 20.7 0.0 0.32 10.7 0.0 2.6 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|218883873|ref|YP_002428255.1| - 0.0057 16.4 0.0 2.1 7.9 0.0 2.3 2 0 0 2 2 2 2 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.15 gi|218883873|ref|YP_002428255.1| - 0.019 14.6 0.0 1.7 8.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical protein 95 zinc_ribbon_2 PF13240.6 gi|218883873|ref|YP_002428255.1| - 0.1 12.3 0.4 0.33 10.7 0.4 1.8 1 0 0 1 1 1 0 zinc-ribbon domain Glyco_trans_4_4 PF13579.6 gi|218883873|ref|YP_002428255.1| - 0.11 12.9 0.2 0.57 10.6 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain PyrI_C PF02748.15 gi|218883873|ref|YP_002428255.1| - 0.13 12.2 1.2 4.3 7.3 0.1 2.5 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain FCD PF07729.12 gi|218883873|ref|YP_002428255.1| - 0.14 12.6 0.0 0.38 11.2 0.0 1.7 1 0 0 1 1 1 0 FCD domain AAA_13 PF13166.6 gi|218883873|ref|YP_002428255.1| - 0.26 9.9 0.0 0.37 9.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain DNA_ligase_ZBD PF03119.16 gi|218883873|ref|YP_002428255.1| - 1.6 8.8 3.5 26 4.9 0.6 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain EVE PF01878.18 gi|218883874|ref|YP_002428256.1| - 0.037 14.0 0.0 0.037 14.0 0.0 1.0 1 0 0 1 1 1 0 EVE domain PetG PF02529.15 gi|218883877|ref|YP_002428259.1| - 8.2 6.4 7.2 8.7 6.3 1.4 2.4 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 GIY-YIG PF01541.24 gi|218883878|ref|YP_002428260.1| - 0.0031 17.8 0.2 0.006 16.8 0.2 1.7 1 1 0 1 1 1 1 GIY-YIG catalytic domain DUF3487 PF11990.8 gi|218883879|ref|YP_002428261.1| - 2.3 8.1 11.3 0.75 9.7 4.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) DUF2299 PF10061.9 gi|218883880|ref|YP_002428262.1| - 8.4e-28 96.8 0.0 9.8e-28 96.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) SNARE_assoc PF09335.11 gi|218883881|ref|YP_002428263.1| - 4.1e-11 43.4 6.1 4.1e-11 43.4 6.1 2.4 1 1 1 2 2 2 1 SNARE associated Golgi protein DUF2749 PF10907.8 gi|218883881|ref|YP_002428263.1| - 0.13 12.5 1.5 5 7.4 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) DUF983 PF06170.12 gi|218883881|ref|YP_002428263.1| - 0.16 12.4 3.3 0.56 10.7 3.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF983) PRA1 PF03208.19 gi|218883881|ref|YP_002428263.1| - 8.2 6.1 10.1 0.7 9.5 3.2 2.4 1 1 1 2 2 2 0 PRA1 family protein MS_channel PF00924.18 gi|218883882|ref|YP_002428264.1| - 1.5e-16 60.5 4.6 1.5e-16 60.5 4.6 2.8 2 1 1 3 3 3 1 Mechanosensitive ion channel PRA1 PF03208.19 gi|218883882|ref|YP_002428264.1| - 0.91 9.1 5.5 1.7 8.3 5.5 1.4 1 0 0 1 1 1 0 PRA1 family protein MFS_1 PF07690.16 gi|218883883|ref|YP_002428265.1| - 0.0039 16.2 9.2 0.0039 16.2 9.2 3.4 1 1 2 3 3 3 2 Major Facilitator Superfamily OrfB_Zn_ribbon PF07282.11 gi|218883884|ref|YP_002428266.1| - 0.019 14.9 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain AIRS PF00586.24 gi|218883885|ref|YP_002428267.1| - 2e-14 54.0 0.0 4.3e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|218883885|ref|YP_002428267.1| - 1e-06 29.0 0.0 1.7e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DSPc PF00782.20 gi|218883886|ref|YP_002428268.1| - 1.2e-09 38.0 0.0 2.4e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|218883886|ref|YP_002428268.1| - 0.0048 16.5 0.0 0.0069 16.0 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|218883886|ref|YP_002428268.1| - 0.016 14.9 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) Myotub-related PF06602.14 gi|218883886|ref|YP_002428268.1| - 0.11 11.3 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Myotubularin-like phosphatase domain Aldolase PF01081.19 gi|218883886|ref|YP_002428268.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 KDPG and KHG aldolase HycI PF01750.18 gi|218883888|ref|YP_002428270.1| - 5.4e-13 48.9 0.2 7.3e-13 48.5 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease TPP_enzyme_C PF02775.21 gi|218883889|ref|YP_002428271.1| - 2.6e-24 85.8 0.3 3.5e-24 85.3 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|218883890|ref|YP_002428272.1| - 2.3e-74 250.1 0.2 3e-74 249.7 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|218883890|ref|YP_002428272.1| - 8.2e-30 103.1 0.0 1.7e-29 102.1 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|218883890|ref|YP_002428272.1| - 4.6e-06 26.5 0.0 1.1e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain MannoseP_isomer PF01050.18 gi|218883890|ref|YP_002428272.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Fer4 PF00037.27 gi|218883891|ref|YP_002428273.1| - 1.7e-13 49.8 13.5 1.4e-07 31.0 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|218883891|ref|YP_002428273.1| - 6.7e-10 39.0 10.1 8.4e-10 38.6 10.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218883891|ref|YP_002428273.1| - 8.3e-09 35.2 12.9 0.00012 22.0 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|218883891|ref|YP_002428273.1| - 1.8e-08 34.4 6.8 2.3e-08 34.1 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|218883891|ref|YP_002428273.1| - 4.8e-08 33.5 21.6 4.7e-06 27.1 10.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|218883891|ref|YP_002428273.1| - 1.4e-07 32.3 7.7 0.0004 21.3 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|218883891|ref|YP_002428273.1| - 8.2e-07 28.8 11.1 0.00019 21.3 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|218883891|ref|YP_002428273.1| - 1.3e-06 28.4 21.8 7.3e-05 22.8 11.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|218883891|ref|YP_002428273.1| - 6.9e-05 23.3 12.1 0.0014 19.1 2.1 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|218883891|ref|YP_002428273.1| - 0.0036 18.0 13.1 0.29 11.9 1.6 3.0 2 1 1 3 3 3 3 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|218883891|ref|YP_002428273.1| - 0.0044 17.4 12.0 0.014 15.8 1.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|218883891|ref|YP_002428273.1| - 0.007 16.8 10.5 0.3 11.7 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|218883891|ref|YP_002428273.1| - 0.074 13.6 12.0 0.29 11.7 2.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|218883891|ref|YP_002428273.1| - 0.55 10.4 7.0 1.2 9.3 7.0 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|218883891|ref|YP_002428273.1| - 2.5 9.0 12.3 0.41 11.5 2.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|218883892|ref|YP_002428274.1| - 1.1e-33 116.8 0.1 1.3e-33 116.5 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase CPP1-like PF11833.8 gi|218883893|ref|YP_002428275.1| - 0.059 13.0 1.5 0.077 12.7 1.5 1.3 1 1 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2070 PF09843.9 gi|218883893|ref|YP_002428275.1| - 5.4 5.2 13.6 0.62 8.3 9.4 1.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) SNF PF00209.18 gi|218883894|ref|YP_002428276.1| - 3e-51 174.7 37.9 7e-28 97.6 19.2 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family UPF0154 PF03672.13 gi|218883894|ref|YP_002428276.1| - 0.39 10.8 5.1 0.17 11.9 0.4 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) SDF PF00375.18 gi|218883895|ref|YP_002428277.1| - 2.6e-97 326.3 45.2 3e-97 326.1 45.2 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family UPF0113 PF03657.13 gi|218883896|ref|YP_002428278.1| - 1.6e-19 69.9 0.3 2.7e-19 69.2 0.3 1.4 1 0 0 1 1 1 1 UPF0113 PUA domain Methyltr_RsmB-F PF01189.17 gi|218883897|ref|YP_002428279.1| - 1.8e-39 135.5 0.0 2.2e-39 135.2 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|218883897|ref|YP_002428279.1| - 3.1e-12 46.8 0.0 4.8e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF DUF72 PF01904.18 gi|218883898|ref|YP_002428280.1| - 1.1e-41 143.4 0.1 1.2e-41 143.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 PHO4 PF01384.20 gi|218883899|ref|YP_002428281.1| - 1.4e-60 205.1 29.1 1.8e-60 204.8 29.1 1.1 1 0 0 1 1 1 1 Phosphate transporter family Peptidase_M42 PF05343.14 gi|218883900|ref|YP_002428282.1| - 6.1e-106 353.7 0.2 7.1e-106 353.5 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|218883900|ref|YP_002428282.1| - 3.7e-10 39.9 0.1 6.3e-10 39.1 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|218883900|ref|YP_002428282.1| - 1.8e-06 27.8 0.0 0.00018 21.2 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M18 PF02127.15 gi|218883900|ref|YP_002428282.1| - 0.014 14.2 0.0 0.05 12.4 0.0 1.8 1 1 1 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) Tudor_2 PF18104.1 gi|218883900|ref|YP_002428282.1| - 0.015 14.9 0.2 0.033 13.9 0.2 1.6 1 0 0 1 1 1 0 Jumonji domain-containing protein 2A Tudor domain DUF4905 PF16248.5 gi|218883901|ref|YP_002428283.1| - 0.096 12.6 0.0 0.98 9.4 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4905) SPASM PF13186.6 gi|218883902|ref|YP_002428284.1| - 6.5e-13 49.0 0.4 1.7e-12 47.6 0.4 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|218883902|ref|YP_002428284.1| - 1.6e-09 38.3 0.2 6.9e-08 33.1 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|218883902|ref|YP_002428284.1| - 0.00084 19.5 0.0 0.0024 18.0 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain IpaB_EvcA PF03278.13 gi|218883902|ref|YP_002428284.1| - 0.031 14.0 0.1 0.078 12.7 0.1 1.7 1 0 0 1 1 1 0 IpaB/EvcA family ThiS PF02597.20 gi|218883903|ref|YP_002428285.1| - 1.5e-12 48.0 0.1 1.9e-12 47.7 0.1 1.1 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.12 gi|218883903|ref|YP_002428285.1| - 0.085 13.2 0.0 0.31 11.4 0.0 1.8 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I AFOR_C PF01314.18 gi|218883904|ref|YP_002428286.1| - 5e-147 489.9 0.0 6.2e-147 489.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|218883904|ref|YP_002428286.1| - 3.9e-76 255.3 1.3 1.6e-75 253.3 0.1 2.4 3 0 0 3 3 3 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AAA_3 PF07726.11 gi|218883905|ref|YP_002428287.1| - 8.8e-63 210.0 0.2 2.2e-62 208.7 0.1 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|218883905|ref|YP_002428287.1| - 2.5e-20 72.1 0.0 4.2e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|218883905|ref|YP_002428287.1| - 7.9e-17 61.6 0.0 3.4e-16 59.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|218883905|ref|YP_002428287.1| - 2.2e-06 28.1 0.0 6e-06 26.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|218883905|ref|YP_002428287.1| - 4.4e-05 22.7 0.0 0.0001 21.5 0.0 1.5 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|218883905|ref|YP_002428287.1| - 8.5e-05 22.0 1.0 0.32 10.3 0.0 2.7 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|218883905|ref|YP_002428287.1| - 8.5e-05 22.3 0.0 0.00022 21.0 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|218883905|ref|YP_002428287.1| - 0.0023 17.7 0.4 0.042 13.6 0.1 2.5 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Fimbrial_PilY2 PF14481.6 gi|218883905|ref|YP_002428287.1| - 0.026 14.2 0.0 2.5 7.8 0.0 2.6 2 0 0 2 2 2 0 Type 4 fimbrial biogenesis protein PilY2 AAA_2 PF07724.14 gi|218883905|ref|YP_002428287.1| - 0.028 14.5 0.2 1.1 9.3 0.0 2.6 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) Njmu-R1 PF15053.6 gi|218883905|ref|YP_002428287.1| - 0.029 13.5 0.1 0.14 11.2 0.0 1.8 2 0 0 2 2 2 0 Mjmu-R1-like protein family MCM_lid PF17855.1 gi|218883905|ref|YP_002428287.1| - 0.06 13.8 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 MCM AAA-lid domain Filo_VP35 PF02097.15 gi|218883905|ref|YP_002428287.1| - 0.078 12.0 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Filoviridae VP35 SeqA_N PF17206.3 gi|218883905|ref|YP_002428287.1| - 4.1 6.8 7.1 1.2 8.5 0.9 2.5 2 0 0 2 2 2 0 SeqA protein N-terminal domain DUF4129 PF13559.6 gi|218883906|ref|YP_002428288.1| - 1.3e-09 38.2 1.5 2.1e-09 37.5 1.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) HD_4 PF13328.6 gi|218883906|ref|YP_002428288.1| - 0.014 15.2 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 HD domain DUF2540 PF10802.8 gi|218883906|ref|YP_002428288.1| - 0.049 13.7 0.3 0.11 12.5 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) NICE-3 PF07406.11 gi|218883906|ref|YP_002428288.1| - 0.1 12.6 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 NICE-3 protein CtsR_C PF17727.1 gi|218883906|ref|YP_002428288.1| - 0.12 12.5 2.5 0.64 10.2 0.3 2.6 2 0 0 2 2 2 0 CtsR C-terminal dimerization domain DUF58 PF01882.18 gi|218883910|ref|YP_002428292.1| - 3.5e-14 52.8 0.0 5.4e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF58 Linocin_M18 PF04454.12 gi|218883911|ref|YP_002428293.1| - 3.1e-32 111.9 0.0 4.8e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|218883911|ref|YP_002428293.1| - 4.4e-09 36.9 0.2 7.7e-09 36.1 0.2 1.4 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|218883911|ref|YP_002428293.1| - 0.007 16.7 0.2 0.014 15.7 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Phage_capsid PF05065.13 gi|218883911|ref|YP_002428293.1| - 0.01 15.2 0.1 2.7 7.2 0.0 2.5 2 0 0 2 2 2 0 Phage capsid family Ferritin PF00210.24 gi|218883911|ref|YP_002428293.1| - 0.027 14.4 0.1 0.055 13.4 0.1 1.5 1 0 0 1 1 1 0 Ferritin-like domain DUF615 PF04751.14 gi|218883911|ref|YP_002428293.1| - 0.14 12.2 0.1 0.26 11.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF615) Rubrerythrin PF02915.17 gi|218883912|ref|YP_002428294.1| - 2.8e-06 27.8 3.0 5.9e-06 26.7 3.0 1.6 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|218883912|ref|YP_002428294.1| - 0.0069 16.3 2.8 0.032 14.1 2.8 1.9 1 1 0 1 1 1 1 Ferritin-like domain PTS_IIA PF02255.16 gi|218883912|ref|YP_002428294.1| - 0.014 15.4 1.4 0.026 14.5 1.4 1.4 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIA subunit COQ7 PF03232.13 gi|218883912|ref|YP_002428294.1| - 0.017 14.9 1.9 0.03 14.1 2.0 1.6 1 1 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 FCH PF00611.23 gi|218883912|ref|YP_002428294.1| - 0.048 13.9 0.4 0.15 12.3 0.1 2.0 2 1 0 2 2 2 0 Fes/CIP4, and EFC/F-BAR homology domain HSR PF03172.13 gi|218883912|ref|YP_002428294.1| - 0.059 13.5 1.7 0.27 11.4 0.5 2.6 1 1 2 3 3 3 0 HSR domain Lactamase_B PF00753.27 gi|218883913|ref|YP_002428295.1| - 1.8e-07 31.4 0.1 3.1e-07 30.6 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Peripla_BP_6 PF13458.6 gi|218883913|ref|YP_002428295.1| - 0.0077 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Lactamase_B_2 PF12706.7 gi|218883913|ref|YP_002428295.1| - 0.027 14.0 0.0 0.041 13.4 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain RsgI_N PF12791.7 gi|218883913|ref|YP_002428295.1| - 0.098 12.6 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Anti-sigma factor N-terminus AhpC-TSA PF00578.21 gi|218883914|ref|YP_002428296.1| - 1e-31 109.4 0.0 1.4e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|218883914|ref|YP_002428296.1| - 1.5e-16 60.4 0.0 2.2e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|218883914|ref|YP_002428296.1| - 5.1e-11 42.2 0.0 1.2e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Sel1 PF08238.12 gi|218883914|ref|YP_002428296.1| - 0.011 16.3 0.1 0.031 14.9 0.1 1.8 1 0 0 1 1 1 0 Sel1 repeat AhpC-TSA_2 PF13911.6 gi|218883914|ref|YP_002428296.1| - 0.074 13.2 0.0 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF4368 PF14287.6 gi|218883914|ref|YP_002428296.1| - 0.089 13.1 0.0 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4368) zinc_ribbon_9 PF14369.6 gi|218883915|ref|YP_002428297.1| - 0.014 15.7 0.3 0.11 12.7 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon Mu-like_Com PF10122.9 gi|218883915|ref|YP_002428297.1| - 0.034 13.6 1.3 1.1 8.7 0.1 2.4 2 0 0 2 2 2 0 Mu-like prophage protein Com CpXC PF14353.6 gi|218883915|ref|YP_002428297.1| - 0.052 13.6 0.2 12 6.0 0.0 2.1 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_5 PF13719.6 gi|218883915|ref|YP_002428297.1| - 0.084 12.7 0.2 3.2 7.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|218883915|ref|YP_002428297.1| - 0.1 12.0 3.8 1.8 8.1 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|218883915|ref|YP_002428297.1| - 0.21 11.7 4.0 5.3 7.2 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C4_Topoisom PF01396.19 gi|218883915|ref|YP_002428297.1| - 0.29 10.9 2.9 5.7 6.8 0.2 2.9 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-Di19 PF05605.12 gi|218883915|ref|YP_002428297.1| - 0.38 11.1 2.2 12 6.3 2.2 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding HD PF01966.22 gi|218883916|ref|YP_002428298.1| - 3.2e-07 30.6 0.6 1.3e-06 28.6 0.6 2.1 1 1 0 1 1 1 1 HD domain Peptidase_C74 PF12387.8 gi|218883916|ref|YP_002428298.1| - 0.071 12.6 0.1 0.15 11.5 0.1 1.6 1 1 0 1 1 1 0 Pestivirus NS2 peptidase Glycos_transf_2 PF00535.26 gi|218883917|ref|YP_002428299.1| - 5.1e-30 104.5 0.0 7.5e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|218883917|ref|YP_002428299.1| - 1.5e-11 44.7 0.0 2e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|218883917|ref|YP_002428299.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 UPF0542 PF15086.6 gi|218883917|ref|YP_002428299.1| - 0.21 11.6 1.0 0.38 10.7 1.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 tRNA-synt_1 PF00133.22 gi|218883918|ref|YP_002428300.1| - 5e-176 586.5 0.2 6.2e-176 586.2 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|218883918|ref|YP_002428300.1| - 6.5e-39 133.3 0.1 1.4e-38 132.2 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|218883918|ref|YP_002428300.1| - 2.2e-20 72.8 0.2 5.6e-07 28.7 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|218883918|ref|YP_002428300.1| - 3.8e-08 33.1 0.4 1.9e-07 30.8 0.0 2.3 3 0 0 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 Arch_flagellin PF01917.16 gi|218883918|ref|YP_002428300.1| - 0.048 13.8 0.0 0.095 12.9 0.0 1.4 1 0 0 1 1 1 0 Archaebacterial flagellin tRNA-synt_1e PF01406.19 gi|218883918|ref|YP_002428300.1| - 0.11 11.8 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain dCMP_cyt_deam_1 PF00383.23 gi|218883919|ref|YP_002428301.1| - 1.5e-16 60.1 0.2 1.8e-16 59.8 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|218883919|ref|YP_002428301.1| - 1.7e-10 41.2 0.3 2.5e-10 40.7 0.3 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|218883919|ref|YP_002428301.1| - 3.8e-06 26.6 1.7 0.0014 18.3 0.2 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases Methyltransf_23 PF13489.6 gi|218883920|ref|YP_002428302.1| - 5.1e-11 42.7 0.0 6.4e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|218883920|ref|YP_002428302.1| - 8.3e-11 42.4 0.0 1.2e-10 41.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|218883920|ref|YP_002428302.1| - 5.2e-09 36.7 0.0 1e-08 35.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|218883920|ref|YP_002428302.1| - 1.2e-06 29.2 0.0 1.1e-05 26.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|218883920|ref|YP_002428302.1| - 0.00074 19.3 0.0 0.13 12.1 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase domain NNMT_PNMT_TEMT PF01234.17 gi|218883920|ref|YP_002428302.1| - 0.041 13.1 0.0 3.8 6.6 0.0 2.2 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_9 PF08003.11 gi|218883920|ref|YP_002428302.1| - 0.099 11.6 0.2 0.55 9.1 0.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) Pox_MCEL PF03291.16 gi|218883920|ref|YP_002428302.1| - 0.12 11.5 0.0 0.2 10.7 0.0 1.5 1 0 0 1 1 1 0 mRNA capping enzyme AAA_23 PF13476.6 gi|218883921|ref|YP_002428303.1| - 3.7e-27 96.1 13.7 3.7e-27 96.1 13.7 5.4 1 1 2 3 3 1 1 AAA domain SMC_N PF02463.19 gi|218883921|ref|YP_002428303.1| - 2e-12 47.0 5.7 7.6e-06 25.5 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|218883921|ref|YP_002428303.1| - 3.3e-06 26.8 0.1 3.3e-06 26.8 0.1 4.8 4 1 1 5 5 5 1 AAA domain AAA_21 PF13304.6 gi|218883921|ref|YP_002428303.1| - 1.7e-05 24.8 21.8 0.00012 22.0 6.5 3.8 2 2 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|218883921|ref|YP_002428303.1| - 0.00028 20.6 0.0 0.00056 19.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Baculo_PEP_C PF04513.12 gi|218883921|ref|YP_002428303.1| - 0.00069 19.7 18.3 0.092 12.8 0.6 4.4 2 2 2 5 5 5 3 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.12 gi|218883921|ref|YP_002428303.1| - 0.0029 17.6 9.6 0.0029 17.6 9.6 5.1 2 2 2 4 4 4 1 Laminin Domain II Rad50_zn_hook PF04423.14 gi|218883921|ref|YP_002428303.1| - 0.0037 17.1 0.4 0.0037 17.1 0.4 7.0 7 2 1 8 8 5 1 Rad50 zinc hook motif PspA_IM30 PF04012.12 gi|218883921|ref|YP_002428303.1| - 0.0069 16.0 8.2 0.0069 16.0 8.2 4.9 1 1 4 5 5 5 2 PspA/IM30 family AAA_13 PF13166.6 gi|218883921|ref|YP_002428303.1| - 0.0072 15.0 55.9 0.0082 14.8 17.3 4.3 2 1 1 3 3 3 1 AAA domain HSBP1 PF06825.12 gi|218883921|ref|YP_002428303.1| - 0.011 15.6 18.3 5.4 6.9 0.5 6.3 5 1 0 5 5 5 0 Heat shock factor binding protein 1 DUF1664 PF07889.12 gi|218883921|ref|YP_002428303.1| - 0.011 15.7 43.4 0.17 11.9 5.3 4.9 3 1 1 4 4 4 0 Protein of unknown function (DUF1664) AAA_16 PF13191.6 gi|218883921|ref|YP_002428303.1| - 0.016 15.6 0.0 0.016 15.6 0.0 4.3 2 1 1 3 3 2 0 AAA ATPase domain zf-C4H2 PF10146.9 gi|218883921|ref|YP_002428303.1| - 0.018 15.4 10.2 0.018 15.4 10.2 5.5 3 2 2 5 5 5 0 Zinc finger-containing protein AAA_25 PF13481.6 gi|218883921|ref|YP_002428303.1| - 0.021 14.4 2.8 0.079 12.5 0.0 3.2 4 0 0 4 4 4 0 AAA domain EzrA PF06160.12 gi|218883921|ref|YP_002428303.1| - 0.035 12.3 76.3 0.076 11.2 16.5 4.6 2 2 2 4 4 4 0 Septation ring formation regulator, EzrA NACHT PF05729.12 gi|218883921|ref|YP_002428303.1| - 0.037 13.9 0.8 0.094 12.6 0.0 2.2 2 0 0 2 2 1 0 NACHT domain DUF3450 PF11932.8 gi|218883921|ref|YP_002428303.1| - 0.079 12.3 57.3 0.72 9.1 5.9 4.9 2 2 3 5 5 5 0 Protein of unknown function (DUF3450) ABC_tran PF00005.27 gi|218883921|ref|YP_002428303.1| - 0.095 13.2 0.0 0.095 13.2 0.0 5.8 3 2 0 3 3 2 0 ABC transporter AAA_22 PF13401.6 gi|218883921|ref|YP_002428303.1| - 0.15 12.4 0.0 0.15 12.4 0.0 5.0 3 1 3 6 6 6 0 AAA domain Spc7 PF08317.11 gi|218883921|ref|YP_002428303.1| - 0.15 10.9 81.6 0.12 11.2 6.8 4.3 2 2 2 4 4 4 0 Spc7 kinetochore protein AAA_19 PF13245.6 gi|218883921|ref|YP_002428303.1| - 0.19 12.1 1.6 1.6 9.1 0.0 3.2 3 1 0 3 3 3 0 AAA domain AAA_5 PF07728.14 gi|218883921|ref|YP_002428303.1| - 0.45 10.5 0.0 0.45 10.5 0.0 3.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) ResIII PF04851.15 gi|218883921|ref|YP_002428303.1| - 0.53 10.3 0.0 0.53 10.3 0.0 3.8 4 1 0 4 4 3 0 Type III restriction enzyme, res subunit APG6_N PF17675.1 gi|218883921|ref|YP_002428303.1| - 1.3 9.5 93.4 3 8.4 17.8 4.9 2 2 2 4 4 4 0 Apg6 coiled-coil region FtsK_SpoIIIE PF01580.18 gi|218883921|ref|YP_002428303.1| - 3.1 7.1 9.5 0.55 9.5 0.1 3.7 4 0 0 4 4 4 0 FtsK/SpoIIIE family DUF3800 PF12686.7 gi|218883921|ref|YP_002428303.1| - 3.5 8.3 14.4 1.8e+04 -4.6 14.4 4.5 1 1 0 1 1 0 0 Protein of unknown function (DUF3800) Prominin PF05478.11 gi|218883921|ref|YP_002428303.1| - 5.6 4.8 38.5 0.71 7.8 13.2 2.4 1 1 1 2 2 2 0 Prominin Exonuc_VII_L PF02601.15 gi|218883921|ref|YP_002428303.1| - 9.2 5.7 45.9 1.8e+04 -17.4 45.9 3.4 1 1 0 1 1 0 0 Exonuclease VII, large subunit DUF87 PF01935.17 gi|218883922|ref|YP_002428304.1| - 1.9e-14 54.3 2.9 9.9e-12 45.4 0.1 2.4 2 0 0 2 2 2 2 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|218883922|ref|YP_002428304.1| - 3.4e-06 26.6 0.0 0.0015 18.0 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|218883922|ref|YP_002428304.1| - 1.7e-05 23.9 0.0 5.9e-05 22.2 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|218883922|ref|YP_002428304.1| - 0.00068 18.7 0.1 0.2 10.6 0.0 2.5 2 0 0 2 2 2 2 AAA-like domain SepF PF04472.12 gi|218883922|ref|YP_002428304.1| - 0.0047 17.2 0.3 0.018 15.3 0.2 2.0 2 0 0 2 2 2 1 Cell division protein SepF PduV-EutP PF10662.9 gi|218883922|ref|YP_002428304.1| - 0.0074 16.0 0.2 0.091 12.5 0.1 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.6 gi|218883922|ref|YP_002428304.1| - 0.16 12.3 0.5 0.52 10.6 0.5 2.0 1 1 0 1 1 1 0 AAA domain Metallophos PF00149.28 gi|218883924|ref|YP_002428306.1| - 3.2e-15 57.2 0.3 5.3e-15 56.5 0.3 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|218883924|ref|YP_002428306.1| - 3.7e-05 24.0 0.0 0.0003 21.0 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PALP PF00291.25 gi|218883925|ref|YP_002428307.1| - 2.1e-71 240.7 0.0 2.5e-71 240.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PfkB PF00294.24 gi|218883926|ref|YP_002428308.1| - 2.2e-52 178.3 0.0 2.6e-52 178.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|218883926|ref|YP_002428308.1| - 0.00029 20.3 0.0 0.00041 19.8 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DeoC PF01791.9 gi|218883927|ref|YP_002428309.1| - 1.7e-33 116.2 0.0 2e-33 116.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase Sm_multidrug_ex PF06695.11 gi|218883928|ref|YP_002428310.1| - 7.3e-29 100.9 2.2 1.1e-28 100.3 2.2 1.3 1 0 0 1 1 1 1 Putative small multi-drug export protein EI24 PF07264.11 gi|218883928|ref|YP_002428310.1| - 0.027 14.7 9.2 0.07 13.4 9.3 1.7 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Bmp PF02608.14 gi|218883929|ref|YP_002428311.1| - 4.2e-34 117.9 0.2 6.4e-34 117.3 0.2 1.2 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_6 PF13458.6 gi|218883929|ref|YP_002428311.1| - 0.00034 20.4 1.1 0.00054 19.7 0.4 1.6 1 1 0 1 1 1 1 Periplasmic binding protein RAI16-like PF10257.9 gi|218883929|ref|YP_002428311.1| - 0.043 12.7 0.0 0.061 12.2 0.0 1.1 1 0 0 1 1 1 0 Retinoic acid induced 16-like protein Hpr_kinase_N PF02603.16 gi|218883929|ref|YP_002428311.1| - 0.044 13.8 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 HPr Serine kinase N terminus ABC_tran PF00005.27 gi|218883930|ref|YP_002428312.1| - 1.7e-39 135.5 0.1 2.1e-29 102.8 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_29 PF13555.6 gi|218883930|ref|YP_002428312.1| - 0.00055 19.6 0.0 0.0088 15.8 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|218883930|ref|YP_002428312.1| - 0.0081 15.9 0.8 9.2 5.9 0.0 3.6 3 1 1 4 4 4 1 AAA domain AAA_21 PF13304.6 gi|218883930|ref|YP_002428312.1| - 0.0088 15.9 0.6 0.075 12.8 0.6 2.4 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system MeaB PF03308.16 gi|218883930|ref|YP_002428312.1| - 0.015 14.3 1.3 1.5 7.7 0.8 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|218883930|ref|YP_002428312.1| - 0.017 15.5 0.0 0.073 13.5 0.0 2.0 2 2 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|218883930|ref|YP_002428312.1| - 0.063 13.2 0.1 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 gi|218883930|ref|YP_002428312.1| - 0.067 13.7 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|218883930|ref|YP_002428312.1| - 0.07 12.3 0.0 3 6.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) GYF_2 PF14237.6 gi|218883930|ref|YP_002428312.1| - 0.079 12.8 0.0 19 5.1 0.0 2.6 2 0 0 2 2 2 0 GYF domain 2 MukB PF04310.12 gi|218883930|ref|YP_002428312.1| - 0.097 12.5 0.0 0.37 10.6 0.0 1.9 2 0 0 2 2 2 0 MukB N-terminal SMC_N PF02463.19 gi|218883930|ref|YP_002428312.1| - 0.11 11.9 0.6 4.9 6.5 0.0 3.0 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain cobW PF02492.19 gi|218883930|ref|YP_002428312.1| - 1.8 8.1 4.4 5.2 6.6 0.8 2.9 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain BPD_transp_2 PF02653.16 gi|218883931|ref|YP_002428313.1| - 2.3e-21 76.2 28.6 2.3e-21 76.2 28.6 2.5 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component GNVR PF13807.6 gi|218883931|ref|YP_002428313.1| - 3.3 7.7 9.1 6.3 6.8 0.3 3.8 4 0 0 4 4 4 0 G-rich domain on putative tyrosine kinase BPD_transp_2 PF02653.16 gi|218883932|ref|YP_002428314.1| - 1.7e-17 63.5 35.0 2.3e-17 63.0 35.0 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component tRNA-synt_1f PF01921.18 gi|218883933|ref|YP_002428315.1| - 8.2e-92 307.9 0.5 1e-91 307.6 0.5 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) TF_Zn_Ribbon PF08271.12 gi|218883933|ref|YP_002428315.1| - 0.051 13.1 3.1 0.16 11.5 3.1 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding MFS_1 PF07690.16 gi|218883934|ref|YP_002428316.1| - 3e-24 85.6 37.7 6.4e-12 45.1 16.9 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily tRNA-synt_1 PF00133.22 gi|218883935|ref|YP_002428317.1| - 7.4e-51 173.1 0.0 2.2e-50 171.6 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|218883935|ref|YP_002428317.1| - 1.4e-19 70.2 3.6 3.1e-10 39.4 0.1 4.1 4 0 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|218883935|ref|YP_002428317.1| - 1.1e-14 54.7 0.0 2.1e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|218883935|ref|YP_002428317.1| - 6.1e-08 32.4 0.2 0.0045 16.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|218883935|ref|YP_002428317.1| - 0.0027 16.7 0.0 0.0086 15.0 0.0 1.8 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|218883935|ref|YP_002428317.1| - 0.04 13.4 0.1 0.15 11.5 0.0 1.8 2 0 0 2 2 2 0 Leucyl-tRNA synthetase, Domain 2 Amidohydro_1 PF01979.20 gi|218883936|ref|YP_002428318.1| - 6e-28 98.1 0.0 7.1e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|218883936|ref|YP_002428318.1| - 8.3e-13 48.6 0.1 9.1e-06 25.4 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family MarC PF01914.17 gi|218883937|ref|YP_002428319.1| - 1.6e-44 151.8 19.6 1.9e-44 151.5 19.6 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Cation_efflux PF01545.21 gi|218883938|ref|YP_002428320.1| - 3.6e-15 56.2 14.7 4.8e-15 55.8 14.7 1.1 1 0 0 1 1 1 1 Cation efflux family Fer4_13 PF13370.6 gi|218883939|ref|YP_002428321.1| - 5.9e-21 74.8 3.4 6.8e-21 74.6 3.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|218883939|ref|YP_002428321.1| - 2.6e-15 56.9 2.6 3e-15 56.7 2.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|218883939|ref|YP_002428321.1| - 0.006 16.4 5.5 0.051 13.4 1.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|218883939|ref|YP_002428321.1| - 0.0076 16.8 2.4 0.03 14.9 2.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218883939|ref|YP_002428321.1| - 0.017 15.2 6.5 0.022 14.8 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|218883939|ref|YP_002428321.1| - 0.052 14.1 3.7 0.053 14.1 0.2 2.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|218883939|ref|YP_002428321.1| - 0.17 12.0 3.7 1.9 8.7 4.2 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Peptidase_M20 PF01546.28 gi|218883940|ref|YP_002428322.1| - 2e-38 132.2 0.0 2.6e-38 131.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|218883940|ref|YP_002428322.1| - 6.2e-20 71.1 0.0 1e-19 70.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain CPSase_L_D2 PF02786.17 gi|218883941|ref|YP_002428323.1| - 4.9e-36 124.2 0.0 7.4e-36 123.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|218883941|ref|YP_002428323.1| - 2e-24 86.2 0.0 5.1e-24 85.0 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|218883941|ref|YP_002428323.1| - 3.8e-20 72.0 0.0 7.9e-20 71.0 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|218883941|ref|YP_002428323.1| - 1.9e-09 37.4 0.0 6.1e-09 35.7 0.0 1.9 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|218883941|ref|YP_002428323.1| - 4.9e-09 36.0 0.0 9.1e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|218883941|ref|YP_002428323.1| - 8.5e-07 28.7 0.0 1.3e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_ST PF14397.6 gi|218883941|ref|YP_002428323.1| - 0.00013 21.4 0.0 0.00026 20.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp CPDase PF07823.11 gi|218883941|ref|YP_002428323.1| - 0.011 15.4 0.0 0.19 11.4 0.0 2.1 2 0 0 2 2 2 0 Cyclic phosphodiesterase-like protein GARS_A PF01071.19 gi|218883941|ref|YP_002428323.1| - 0.03 14.1 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_YheCD PF14398.6 gi|218883941|ref|YP_002428323.1| - 0.05 12.9 0.0 0.096 11.9 0.0 1.4 1 0 0 1 1 1 0 YheC/D like ATP-grasp PPDK_N PF01326.19 gi|218883942|ref|YP_002428324.1| - 1e-122 409.6 0.0 1.6e-122 408.9 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|218883942|ref|YP_002428324.1| - 1.1e-90 303.8 0.0 2e-90 302.9 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|218883942|ref|YP_002428324.1| - 1.3e-29 101.7 0.8 2.9e-29 100.6 0.8 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.21 gi|218883942|ref|YP_002428324.1| - 0.041 14.2 0.0 0.3 11.4 0.0 2.4 2 1 0 2 2 2 0 Radical SAM superfamily Epimerase_2 PF02350.19 gi|218883942|ref|YP_002428324.1| - 0.058 12.2 0.0 0.13 11.1 0.0 1.5 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase ParA PF10609.9 gi|218883943|ref|YP_002428325.1| - 7.2e-05 22.4 0.2 0.00013 21.5 0.2 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase cobW PF02492.19 gi|218883943|ref|YP_002428325.1| - 0.00026 20.7 0.0 0.0036 16.9 0.0 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|218883943|ref|YP_002428325.1| - 0.0056 16.7 1.0 0.016 15.3 0.4 2.0 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|218883943|ref|YP_002428325.1| - 0.0064 16.3 0.0 0.042 13.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|218883943|ref|YP_002428325.1| - 0.032 13.2 1.5 0.056 12.4 0.3 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|218883943|ref|YP_002428325.1| - 0.066 13.1 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Torsin PF06309.11 gi|218883943|ref|YP_002428325.1| - 0.17 12.0 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 Torsin Metallophos PF00149.28 gi|218883944|ref|YP_002428326.1| - 0.00059 20.4 1.4 0.0018 18.8 1.4 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|218883944|ref|YP_002428326.1| - 0.017 15.3 0.0 0.03 14.5 0.0 1.4 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain T2SSE PF00437.20 gi|218883945|ref|YP_002428327.1| - 1.1e-10 41.1 0.0 2.1e-10 40.2 0.0 1.4 1 1 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|218883945|ref|YP_002428327.1| - 0.00072 20.1 0.0 0.0027 18.3 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|218883945|ref|YP_002428327.1| - 0.0031 17.9 0.0 0.0065 16.9 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|218883945|ref|YP_002428327.1| - 0.0034 17.8 0.0 0.014 15.8 0.0 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|218883945|ref|YP_002428327.1| - 0.0036 17.3 0.0 0.02 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|218883945|ref|YP_002428327.1| - 0.004 16.9 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DnaB_C PF03796.15 gi|218883945|ref|YP_002428327.1| - 0.0048 16.3 0.0 0.013 14.9 0.0 1.7 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_28 PF13521.6 gi|218883945|ref|YP_002428327.1| - 0.0052 17.0 0.0 0.014 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|218883945|ref|YP_002428327.1| - 0.0054 16.5 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.14 gi|218883945|ref|YP_002428327.1| - 0.0075 16.3 0.0 0.018 15.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|218883945|ref|YP_002428327.1| - 0.0087 16.0 2.1 0.18 11.7 0.0 3.2 3 1 0 3 3 3 1 NTPase Zeta_toxin PF06414.12 gi|218883945|ref|YP_002428327.1| - 0.012 15.0 0.1 0.13 11.6 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 gi|218883945|ref|YP_002428327.1| - 0.012 15.2 0.0 0.025 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|218883945|ref|YP_002428327.1| - 0.022 14.7 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|218883945|ref|YP_002428327.1| - 0.024 14.7 0.0 0.063 13.3 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|218883945|ref|YP_002428327.1| - 0.025 14.2 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_3 PF07726.11 gi|218883945|ref|YP_002428327.1| - 0.025 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|218883945|ref|YP_002428327.1| - 0.033 14.3 0.0 0.095 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|218883945|ref|YP_002428327.1| - 0.04 13.7 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|218883945|ref|YP_002428327.1| - 0.059 13.1 0.1 0.18 11.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain KTI12 PF08433.10 gi|218883945|ref|YP_002428327.1| - 0.091 12.2 0.0 0.25 10.8 0.0 1.7 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|218883945|ref|YP_002428327.1| - 0.092 13.0 0.0 0.33 11.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|218883945|ref|YP_002428327.1| - 0.095 12.4 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|218883945|ref|YP_002428327.1| - 0.11 12.9 0.0 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|218883945|ref|YP_002428327.1| - 0.12 12.7 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|218883945|ref|YP_002428327.1| - 0.14 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|218883945|ref|YP_002428327.1| - 0.18 10.7 0.0 0.85 8.5 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Viral_helicase1 PF01443.18 gi|218883945|ref|YP_002428327.1| - 0.19 11.5 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Hjc PF01870.18 gi|218883946|ref|YP_002428328.1| - 1.9e-29 101.5 0.1 2.8e-29 100.9 0.1 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) RecU PF03838.14 gi|218883946|ref|YP_002428328.1| - 4.6e-06 26.7 0.0 5.7e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Recombination protein U RHH_3 PF12651.7 gi|218883946|ref|YP_002428328.1| - 0.022 14.7 0.0 0.053 13.5 0.1 1.6 2 0 0 2 2 2 0 Ribbon-helix-helix domain Metallophos PF00149.28 gi|218883948|ref|YP_002428330.1| - 3.5e-13 50.5 1.1 7.5e-13 49.4 1.1 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase RIFIN PF02009.16 gi|218883948|ref|YP_002428330.1| - 0.00031 20.7 11.6 0.00048 20.1 11.6 1.2 1 0 0 1 1 1 1 Rifin Metallophos_2 PF12850.7 gi|218883948|ref|YP_002428330.1| - 0.0037 17.5 0.0 0.023 14.9 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Stevor PF17410.2 gi|218883948|ref|YP_002428330.1| - 0.13 11.8 9.2 0.21 11.1 9.2 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Glycophorin_A PF01102.18 gi|218883948|ref|YP_002428330.1| - 1 9.6 10.8 2.6 8.3 10.8 1.7 1 0 0 1 1 1 0 Glycophorin A DUF5383 PF17355.2 gi|218883948|ref|YP_002428330.1| - 1.1 9.7 3.0 1.8 8.9 3.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5383) Glucodextran_C PF09985.9 gi|218883949|ref|YP_002428331.1| - 3.3e-77 259.0 1.0 7.3e-77 257.9 1.0 1.6 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase ABC_transp_aux PF09822.9 gi|218883949|ref|YP_002428331.1| - 0.0019 17.7 0.0 0.0035 16.8 0.0 1.4 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF1565 PF07602.11 gi|218883949|ref|YP_002428331.1| - 0.019 14.3 0.0 1.6 8.0 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1565) Adeno_E3_CR2 PF02439.15 gi|218883949|ref|YP_002428331.1| - 1.3 8.8 3.8 3.2 7.6 3.8 1.6 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 SBP_bac_8 PF13416.6 gi|218883950|ref|YP_002428332.1| - 2.6e-13 50.5 0.7 6.6e-13 49.1 0.0 1.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|218883950|ref|YP_002428332.1| - 1.4e-12 47.5 0.1 2.4e-12 46.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|218883950|ref|YP_002428332.1| - 4.6e-07 30.1 1.0 1e-06 29.0 0.0 2.0 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein Sporozoite_P67 PF05642.11 gi|218883950|ref|YP_002428332.1| - 1.6 6.8 5.6 2.2 6.3 5.6 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen Mucin PF01456.17 gi|218883950|ref|YP_002428332.1| - 7 6.6 29.8 14 5.7 29.8 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein BPD_transp_1 PF00528.22 gi|218883951|ref|YP_002428333.1| - 3.4e-17 62.8 55.2 2.2e-11 43.9 24.2 5.6 4 2 2 6 6 6 3 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|218883952|ref|YP_002428334.1| - 1.9e-34 119.1 0.0 3e-34 118.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218883952|ref|YP_002428334.1| - 6.4e-09 36.0 0.2 0.0002 21.3 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|218883952|ref|YP_002428334.1| - 1.5e-08 34.7 0.4 1.3e-06 28.5 0.0 3.3 4 0 0 4 4 3 1 TOBE domain AAA_23 PF13476.6 gi|218883952|ref|YP_002428334.1| - 0.00011 22.8 0.4 0.00025 21.6 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|218883952|ref|YP_002428334.1| - 0.00014 22.2 1.0 0.0024 18.2 1.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|218883952|ref|YP_002428334.1| - 0.0012 18.4 0.5 0.05 13.0 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RNA_helicase PF00910.22 gi|218883952|ref|YP_002428334.1| - 0.0037 17.6 0.0 0.0067 16.8 0.0 1.4 1 0 0 1 1 1 1 RNA helicase Rad17 PF03215.15 gi|218883952|ref|YP_002428334.1| - 0.0041 17.1 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|218883952|ref|YP_002428334.1| - 0.0052 16.5 0.1 0.12 12.1 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|218883952|ref|YP_002428334.1| - 0.0066 16.9 0.2 0.074 13.5 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|218883952|ref|YP_002428334.1| - 0.023 14.6 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|218883952|ref|YP_002428334.1| - 0.062 13.7 0.1 0.11 12.8 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|218883952|ref|YP_002428334.1| - 0.071 13.4 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|218883952|ref|YP_002428334.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Metallophos_2 PF12850.7 gi|218883953|ref|YP_002428335.1| - 3.2e-17 63.2 0.0 4.2e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|218883953|ref|YP_002428335.1| - 0.00023 21.8 0.2 0.06 13.8 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF4135 PF13575.6 gi|218883954|ref|YP_002428336.1| - 0.17 11.1 0.1 0.23 10.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4135) DUF211 PF02680.14 gi|218883955|ref|YP_002428337.1| - 2.7e-32 110.8 9.1 3e-32 110.6 9.1 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 RHH_1 PF01402.21 gi|218883956|ref|YP_002428338.1| - 0.019 14.9 0.5 0.052 13.5 0.1 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family GP40 PF11025.8 gi|218883956|ref|YP_002428338.1| - 0.059 13.1 0.1 1.9 8.3 0.0 2.0 1 1 1 2 2 2 0 Glycoprotein GP40 of Cryptosporidium TrmB PF01978.19 gi|218883957|ref|YP_002428339.1| - 6.7e-05 22.7 1.6 0.00014 21.6 0.9 1.9 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|218883957|ref|YP_002428339.1| - 0.045 13.7 0.1 0.064 13.2 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_9 PF08221.11 gi|218883957|ref|YP_002428339.1| - 0.047 13.8 0.2 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain PaaX PF07848.12 gi|218883957|ref|YP_002428339.1| - 0.06 13.6 0.2 0.14 12.4 0.1 1.7 2 0 0 2 2 2 0 PaaX-like protein Penicillinase_R PF03965.16 gi|218883957|ref|YP_002428339.1| - 0.11 12.9 0.1 0.16 12.4 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor PhoU_div PF01865.16 gi|218883958|ref|YP_002428340.1| - 6.1e-24 84.5 3.5 7.2e-24 84.3 3.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|218883958|ref|YP_002428340.1| - 0.00027 21.3 2.9 0.0046 17.4 0.2 2.4 2 1 0 2 2 2 1 PhoU domain Plasmid_parti PF01672.16 gi|218883958|ref|YP_002428340.1| - 0.0044 17.6 2.2 1.6 9.5 0.0 3.4 1 1 2 3 3 3 2 Putative plasmid partition protein NTP_transf_3 PF12804.7 gi|218883959|ref|YP_002428341.1| - 1.3e-24 87.4 0.0 1.6e-24 87.0 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|218883959|ref|YP_002428341.1| - 2.6e-06 27.3 0.0 3.4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|218883959|ref|YP_002428341.1| - 0.018 15.0 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Glyco_tranf_2_3 PF13641.6 gi|218883959|ref|YP_002428341.1| - 0.032 14.1 0.0 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 NTP_transferase PF00483.23 gi|218883959|ref|YP_002428341.1| - 0.041 13.5 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase HypD PF01924.16 gi|218883960|ref|YP_002428342.1| - 6.1e-128 426.8 0.0 7.5e-128 426.5 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.6 gi|218883960|ref|YP_002428342.1| - 0.063 13.2 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 zf-RING of BARD1-type protein MTHFR_C PF12225.8 gi|218883960|ref|YP_002428342.1| - 0.29 10.8 1.6 0.49 10.1 1.6 1.3 1 0 0 1 1 1 0 Methylene-tetrahydrofolate reductase C terminal Radical_SAM PF04055.21 gi|218883961|ref|YP_002428343.1| - 1.8e-15 57.7 0.0 3.4e-15 56.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily PhdYeFM_antitox PF02604.19 gi|218883961|ref|YP_002428343.1| - 0.064 13.1 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Orn_Arg_deC_N PF02784.16 gi|218883962|ref|YP_002428344.1| - 5.9e-21 75.0 0.0 1.1e-20 74.1 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DUF724 PF05266.14 gi|218883962|ref|YP_002428344.1| - 6.7 6.5 6.6 25 4.6 0.0 3.5 5 0 0 5 5 5 0 Protein of unknown function (DUF724) XH PF03469.14 gi|218883963|ref|YP_002428345.1| - 0.11 12.4 0.1 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 XH domain NikR_C PF08753.11 gi|218883964|ref|YP_002428346.1| - 2.3e-20 72.5 0.7 3.3e-20 72.0 0.7 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|218883964|ref|YP_002428346.1| - 0.093 12.7 0.0 0.3 11.1 0.0 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family RHH_6 PF16762.5 gi|218883964|ref|YP_002428346.1| - 0.11 13.1 0.0 0.18 12.4 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix domain Fe_dep_repr_C PF02742.15 gi|218883965|ref|YP_002428347.1| - 2.8e-18 65.8 2.6 4.1e-18 65.2 1.7 1.7 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|218883965|ref|YP_002428347.1| - 4.4e-15 55.6 0.0 8.8e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|218883965|ref|YP_002428347.1| - 2.7e-06 27.2 0.0 5.5e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|218883965|ref|YP_002428347.1| - 9.8e-06 25.4 0.0 2.2e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|218883965|ref|YP_002428347.1| - 2.7e-05 24.2 0.1 4.2e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|218883965|ref|YP_002428347.1| - 5.8e-05 23.5 0.0 0.00021 21.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|218883965|ref|YP_002428347.1| - 0.00012 21.8 0.0 0.00037 20.2 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain DUF4423 PF14394.6 gi|218883965|ref|YP_002428347.1| - 0.00031 20.5 0.0 0.00053 19.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|218883965|ref|YP_002428347.1| - 0.00037 20.3 0.1 0.0013 18.6 0.1 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|218883965|ref|YP_002428347.1| - 0.00042 20.1 0.0 0.0012 18.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|218883965|ref|YP_002428347.1| - 0.00073 19.3 0.0 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|218883965|ref|YP_002428347.1| - 0.00074 19.5 0.1 0.001 19.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|218883965|ref|YP_002428347.1| - 0.00094 19.5 0.0 0.0034 17.7 0.0 2.0 2 1 1 3 3 3 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|218883965|ref|YP_002428347.1| - 0.003 17.5 0.0 0.006 16.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|218883965|ref|YP_002428347.1| - 0.0046 16.6 0.0 0.0095 15.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|218883965|ref|YP_002428347.1| - 0.0053 16.3 0.0 0.013 15.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|218883965|ref|YP_002428347.1| - 0.0068 16.2 0.1 0.091 12.5 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain PqqD PF05402.12 gi|218883965|ref|YP_002428347.1| - 0.0081 16.4 0.0 2.4 8.5 0.0 2.8 1 1 1 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_36 PF13730.6 gi|218883965|ref|YP_002428347.1| - 0.019 14.9 0.0 0.1 12.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|218883965|ref|YP_002428347.1| - 0.042 13.9 0.0 0.09 12.8 0.0 1.7 2 1 0 2 2 1 0 Winged helix-turn helix HTH_40 PF14493.6 gi|218883965|ref|YP_002428347.1| - 0.043 14.3 0.1 0.2 12.1 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain Mrr_N PF14338.6 gi|218883965|ref|YP_002428347.1| - 0.055 13.6 0.1 0.2 11.8 0.1 1.9 2 0 0 2 2 2 0 Mrr N-terminal domain TFIIE_alpha PF02002.17 gi|218883965|ref|YP_002428347.1| - 0.075 12.9 0.2 0.26 11.2 0.0 1.8 1 1 1 2 2 2 0 TFIIE alpha subunit SecA_PP_bind PF01043.20 gi|218883965|ref|YP_002428347.1| - 0.099 13.3 0.0 0.12 13.0 0.0 1.2 1 0 0 1 1 1 0 SecA preprotein cross-linking domain HTH_34 PF13601.6 gi|218883965|ref|YP_002428347.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Thioredoxin_3 PF13192.6 gi|218883966|ref|YP_002428348.1| - 5.7e-10 39.1 0.0 6.8e-07 29.3 0.1 2.5 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.24 gi|218883966|ref|YP_002428348.1| - 4.9e-06 26.7 0.5 7.8e-05 22.8 0.2 2.4 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_9 PF14595.6 gi|218883966|ref|YP_002428348.1| - 0.0014 18.4 0.0 0.0024 17.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin ABC_transp_aux PF09822.9 gi|218883966|ref|YP_002428348.1| - 0.0052 16.3 0.0 2.6 7.4 0.0 2.2 2 0 0 2 2 2 2 ABC-type uncharacterized transport system Thioredoxin PF00085.20 gi|218883966|ref|YP_002428348.1| - 0.017 15.1 0.1 0.033 14.2 0.1 1.4 1 0 0 1 1 1 0 Thioredoxin DUF2946 PF11162.8 gi|218883966|ref|YP_002428348.1| - 0.066 13.9 0.9 0.67 10.6 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2946) Epimerase PF01370.21 gi|218883966|ref|YP_002428348.1| - 0.087 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Thioredoxin_2 PF13098.6 gi|218883966|ref|YP_002428348.1| - 0.24 11.9 6.0 3.4 8.2 2.2 3.5 2 2 1 3 3 3 0 Thioredoxin-like domain TrmB PF01978.19 gi|218883967|ref|YP_002428349.1| - 1.2e-05 25.1 0.1 0.00023 21.0 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|218883967|ref|YP_002428349.1| - 2.4e-05 23.8 0.6 0.00011 21.7 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|218883967|ref|YP_002428349.1| - 6.5e-05 22.8 0.1 0.00016 21.6 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|218883967|ref|YP_002428349.1| - 0.0032 17.3 0.0 0.0068 16.3 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|218883967|ref|YP_002428349.1| - 0.0041 17.3 0.0 0.011 15.9 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain AbiEi_4 PF13338.6 gi|218883967|ref|YP_002428349.1| - 0.0063 16.6 0.3 0.072 13.3 0.0 2.5 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin BLOC1_2 PF10046.9 gi|218883967|ref|YP_002428349.1| - 0.0086 16.4 0.8 0.025 14.9 0.8 1.8 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Rrf2 PF02082.20 gi|218883967|ref|YP_002428349.1| - 0.0092 16.3 0.3 0.12 12.8 0.0 2.7 3 1 0 3 3 3 1 Transcriptional regulator HTH_IclR PF09339.10 gi|218883967|ref|YP_002428349.1| - 0.012 15.4 0.0 0.03 14.1 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain FtsK_gamma PF09397.10 gi|218883967|ref|YP_002428349.1| - 0.016 15.0 0.1 0.25 11.1 0.1 2.4 2 0 0 2 2 2 0 Ftsk gamma domain HTH_Crp_2 PF13545.6 gi|218883967|ref|YP_002428349.1| - 0.039 13.9 0.1 0.13 12.3 0.1 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|218883967|ref|YP_002428349.1| - 0.061 13.3 0.1 0.2 11.6 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 gi|218883967|ref|YP_002428349.1| - 0.094 12.6 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family CCDC53 PF10152.9 gi|218883967|ref|YP_002428349.1| - 3 8.3 8.8 0.46 10.9 0.4 2.1 1 1 1 2 2 2 0 Subunit CCDC53 of WASH complex Wyosine_form PF08608.12 gi|218883968|ref|YP_002428350.1| - 1.8e-19 69.8 0.0 3.2e-19 69.0 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|218883968|ref|YP_002428350.1| - 3.3e-17 63.4 0.1 1.2e-16 61.5 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily Hydrolase PF00702.26 gi|218883968|ref|YP_002428350.1| - 0.031 14.6 0.0 0.78 10.0 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|218883968|ref|YP_002428350.1| - 0.19 12.1 0.0 0.45 10.9 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Biotin_lipoyl PF00364.22 gi|218883969|ref|YP_002428351.1| - 2.5e-13 49.6 8.5 3e-13 49.4 7.2 1.8 1 1 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|218883969|ref|YP_002428351.1| - 1.1e-09 38.0 2.1 2.3e-05 24.1 0.4 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|218883969|ref|YP_002428351.1| - 2.9e-06 26.6 1.9 0.032 13.4 0.4 2.4 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|218883969|ref|YP_002428351.1| - 3.1e-05 24.6 3.5 0.16 12.6 0.0 2.8 3 1 0 3 3 3 2 HlyD family secretion protein GCV_H PF01597.19 gi|218883969|ref|YP_002428351.1| - 0.0083 16.0 6.7 0.018 14.9 0.9 2.3 1 1 1 2 2 2 2 Glycine cleavage H-protein DUF2118 PF09891.9 gi|218883969|ref|YP_002428351.1| - 0.037 14.0 9.6 0.058 13.4 9.2 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) DZF PF07528.14 gi|218883969|ref|YP_002428351.1| - 0.11 12.1 0.5 0.16 11.5 0.5 1.3 1 0 0 1 1 1 0 DZF domain Hjc PF01870.18 gi|218883969|ref|YP_002428351.1| - 0.25 11.4 4.7 0.22 11.5 0.5 2.4 1 1 1 2 2 2 0 Archaeal holliday junction resolvase (hjc) Carboxyl_trans PF01039.22 gi|218883971|ref|YP_002428353.1| - 2.3e-183 610.3 0.0 2.7e-183 610.2 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|218883971|ref|YP_002428353.1| - 3.7e-05 23.3 0.1 8.2e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) DUF417 PF04224.12 gi|218883971|ref|YP_002428353.1| - 0.023 14.3 0.1 0.041 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF417 PMC2NT PF08066.12 gi|218883971|ref|YP_002428353.1| - 0.16 12.7 0.0 0.35 11.6 0.0 1.5 1 0 0 1 1 1 0 PMC2NT (NUC016) domain Thiolase_N PF00108.23 gi|218883972|ref|YP_002428354.1| - 8.8e-18 64.6 0.1 6e-17 61.9 0.1 2.1 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|218883972|ref|YP_002428354.1| - 3.6e-13 49.2 0.1 7.6e-13 48.2 0.1 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|218883972|ref|YP_002428354.1| - 0.0013 18.4 3.7 0.0013 18.4 3.7 3.3 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|218883972|ref|YP_002428354.1| - 0.0016 18.2 2.0 0.38 10.6 0.0 3.2 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|218883972|ref|YP_002428354.1| - 0.0021 18.1 0.2 0.81 9.7 0.0 2.6 2 0 0 2 2 2 2 Beta-ketoacyl synthase, C-terminal domain Amidohydro_1 PF01979.20 gi|218883972|ref|YP_002428354.1| - 0.016 14.5 0.1 4.3 6.6 0.0 2.1 2 0 0 2 2 2 0 Amidohydrolase family DUF2279 PF10043.9 gi|218883972|ref|YP_002428354.1| - 0.11 13.3 0.1 6.2 7.7 0.0 2.7 2 0 0 2 2 2 0 Predicted periplasmic lipoprotein (DUF2279) DUF2231 PF09990.9 gi|218883972|ref|YP_002428354.1| - 0.25 11.8 1.6 5.8 7.4 0.0 2.8 3 0 0 3 3 3 0 Predicted membrane protein (DUF2231) PqqD PF05402.12 gi|218883973|ref|YP_002428355.1| - 6.9e-11 42.3 0.4 9.8e-11 41.8 0.4 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) HpcH_HpaI PF03328.14 gi|218883973|ref|YP_002428355.1| - 0.089 11.9 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family tRNA_anti-codon PF01336.25 gi|218883974|ref|YP_002428356.1| - 2.1e-09 37.2 0.5 3e-09 36.8 0.5 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|218883974|ref|YP_002428356.1| - 0.00047 20.0 0.1 0.00066 19.5 0.1 1.2 1 0 0 1 1 1 1 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|218883974|ref|YP_002428356.1| - 0.0058 16.4 0.0 0.0066 16.2 0.0 1.1 1 0 0 1 1 1 1 Cell division control protein 24, OB domain 3 DUF123 PF01986.16 gi|218883975|ref|YP_002428357.1| - 2.3e-19 69.7 0.0 3.2e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF296 PF03479.15 gi|218883976|ref|YP_002428358.1| - 4.2e-16 59.2 0.8 4.8e-16 59.1 0.8 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Auxin_BP PF02041.16 gi|218883976|ref|YP_002428358.1| - 0.021 14.5 0.1 0.029 14.0 0.1 1.2 1 0 0 1 1 1 0 Auxin binding protein AAA_5 PF07728.14 gi|218883978|ref|YP_002428360.1| - 1.4e-27 96.4 0.7 1.3e-26 93.2 0.0 2.7 3 1 1 4 4 4 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|218883978|ref|YP_002428360.1| - 1.4e-07 31.4 0.0 2.1e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|218883978|ref|YP_002428360.1| - 1.1e-06 29.1 0.1 2.7e-05 24.6 0.0 2.8 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_lid_8 PF17868.1 gi|218883978|ref|YP_002428360.1| - 1.6e-06 27.9 0.0 5.2e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 AAA lid domain AAA_16 PF13191.6 gi|218883978|ref|YP_002428360.1| - 1.2e-05 25.8 0.2 8.5e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|218883978|ref|YP_002428360.1| - 0.00014 21.3 0.0 0.0012 18.2 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|218883978|ref|YP_002428360.1| - 0.00015 22.0 0.6 0.0037 17.5 0.0 3.2 3 2 0 3 3 3 1 AAA domain RuvB_N PF05496.12 gi|218883978|ref|YP_002428360.1| - 0.00057 19.7 0.1 0.0034 17.2 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|218883978|ref|YP_002428360.1| - 0.0028 17.8 0.0 0.062 13.4 0.0 2.6 2 1 1 3 3 3 1 AAA domain (Cdc48 subfamily) MCM PF00493.23 gi|218883978|ref|YP_002428360.1| - 0.0031 16.7 0.0 0.0056 15.8 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|218883978|ref|YP_002428360.1| - 0.0035 17.1 0.0 0.019 14.7 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|218883978|ref|YP_002428360.1| - 0.011 15.4 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|218883978|ref|YP_002428360.1| - 0.015 14.9 0.0 0.06 12.9 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region HTH_46 PF15977.5 gi|218883978|ref|YP_002428360.1| - 0.22 11.6 0.8 1.6 8.8 0.0 2.9 5 0 0 5 5 4 0 Winged helix-turn-helix DNA binding VWA_CoxE PF05762.14 gi|218883979|ref|YP_002428361.1| - 2.3e-06 27.2 0.0 4.5e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|218883979|ref|YP_002428361.1| - 1.7e-05 25.1 0.0 3.9e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|218883979|ref|YP_002428361.1| - 0.00017 22.2 0.0 0.0014 19.3 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|218883979|ref|YP_002428361.1| - 0.001 19.0 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Nucleoporin_FG2 PF15967.5 gi|218883979|ref|YP_002428361.1| - 0.11 11.0 0.7 0.15 10.5 0.7 1.1 1 0 0 1 1 1 0 Nucleoporin FG repeated region Aminotran_1_2 PF00155.21 gi|218883980|ref|YP_002428362.1| - 6e-44 150.7 0.0 6.8e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|218883980|ref|YP_002428362.1| - 4.5e-10 38.9 0.0 7.1e-10 38.2 0.0 1.3 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|218883980|ref|YP_002428362.1| - 0.00034 20.0 0.0 0.00052 19.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|218883980|ref|YP_002428362.1| - 0.12 11.7 0.0 0.25 10.6 0.0 1.4 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family PhoU_div PF01865.16 gi|218883981|ref|YP_002428363.1| - 2e-12 46.9 6.6 3.3e-12 46.2 6.5 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|218883981|ref|YP_002428363.1| - 7.1e-06 26.4 8.0 0.012 16.1 0.8 2.3 2 0 0 2 2 2 2 PhoU domain THUMP PF02926.17 gi|218883982|ref|YP_002428364.1| - 0.0049 17.0 0.1 0.0085 16.2 0.1 1.3 1 1 0 1 1 1 1 THUMP domain ERF PF04404.12 gi|218883983|ref|YP_002428365.1| - 0.17 11.8 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 ERF superfamily XdhC_C PF13478.6 gi|218883984|ref|YP_002428366.1| - 5.4e-30 104.5 0.0 7.2e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|218883984|ref|YP_002428366.1| - 8.9e-18 64.2 0.1 1.4e-17 63.6 0.1 1.3 1 0 0 1 1 1 1 XdhC and CoxI family TrkA_N PF02254.18 gi|218883984|ref|YP_002428366.1| - 0.0017 18.6 0.0 0.0025 18.1 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|218883984|ref|YP_002428366.1| - 0.015 14.9 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|218883984|ref|YP_002428366.1| - 0.034 13.5 0.1 0.077 12.4 0.1 1.6 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|218883984|ref|YP_002428366.1| - 0.076 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|218883986|ref|YP_002428368.1| - 2.2e-18 66.9 0.0 3.4e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|218883986|ref|YP_002428368.1| - 1.2e-07 31.8 0.0 2.1e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|218883986|ref|YP_002428368.1| - 7.2e-05 23.3 0.0 0.00013 22.5 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 gi|218883986|ref|YP_002428368.1| - 0.00036 20.1 0.0 0.00051 19.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|218883986|ref|YP_002428368.1| - 0.0016 18.4 0.1 0.0051 16.7 0.0 1.8 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_11 PF14833.6 gi|218883986|ref|YP_002428368.1| - 0.0016 18.7 0.0 0.0026 18.0 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_binding_7 PF13241.6 gi|218883986|ref|YP_002428368.1| - 0.0098 16.3 0.0 0.017 15.5 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|218883986|ref|YP_002428368.1| - 0.04 13.2 0.0 0.063 12.5 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|218883986|ref|YP_002428368.1| - 0.13 12.5 0.1 0.34 11.2 0.1 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|218883986|ref|YP_002428368.1| - 0.19 11.3 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family ERCC4 PF02732.15 gi|218883987|ref|YP_002428369.1| - 7e-16 58.8 0.0 1.1e-15 58.2 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.7 gi|218883987|ref|YP_002428369.1| - 9.1e-12 44.9 0.0 1.9e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|218883987|ref|YP_002428369.1| - 1.4e-10 41.6 0.3 6.8e-10 39.4 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|218883987|ref|YP_002428369.1| - 2.6e-07 30.2 0.1 3.8e-06 26.5 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.15 gi|218883987|ref|YP_002428369.1| - 0.0071 16.1 0.1 0.018 14.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain HHH_3 PF12836.7 gi|218883987|ref|YP_002428369.1| - 0.039 14.2 0.1 0.28 11.5 0.0 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix motif Intein_splicing PF14890.6 gi|218883987|ref|YP_002428369.1| - 0.065 13.2 0.0 6.2 6.8 0.0 2.1 1 1 1 2 2 2 0 Intein splicing domain Pex2_Pex12 PF04757.14 gi|218883987|ref|YP_002428369.1| - 0.082 12.5 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region Glycos_transf_4 PF00953.21 gi|218883988|ref|YP_002428370.1| - 1.4e-30 106.4 13.3 1.4e-30 106.4 13.3 2.1 2 1 1 3 3 3 1 Glycosyl transferase family 4 DUF2244 PF10003.9 gi|218883988|ref|YP_002428370.1| - 5.7 6.6 12.3 1.9 8.2 3.4 2.7 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) Y1_Tnp PF01797.16 gi|218883992|ref|YP_002428374.1| - 2.9e-33 114.5 0.0 3.3e-33 114.4 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.19 gi|218883993|ref|YP_002428375.1| - 2e-25 89.3 0.0 3.6e-25 88.5 0.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|218883993|ref|YP_002428375.1| - 6.7e-12 45.2 0.0 1.1e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvX PF03652.15 gi|218883993|ref|YP_002428375.1| - 0.092 13.1 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Holliday junction resolvase E1-E2_ATPase PF00122.20 gi|218883995|ref|YP_002428377.1| - 1.3e-57 194.3 2.1 1.3e-57 194.3 2.1 3.2 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|218883995|ref|YP_002428377.1| - 6.5e-45 153.1 2.8 6.5e-45 153.1 2.8 2.4 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|218883995|ref|YP_002428377.1| - 1.2e-24 87.8 1.0 3.7e-24 86.2 0.4 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|218883995|ref|YP_002428377.1| - 2.7e-22 78.2 0.0 5.5e-22 77.2 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|218883995|ref|YP_002428377.1| - 6.6e-13 48.5 0.0 1.8e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|218883995|ref|YP_002428377.1| - 2.1e-05 24.4 0.3 0.002 17.9 0.2 2.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|218883995|ref|YP_002428377.1| - 6.7e-05 23.4 0.0 0.00021 21.8 0.0 1.9 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase 4HBT PF03061.22 gi|218883996|ref|YP_002428378.1| - 0.00034 20.9 0.0 0.00049 20.4 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily RuvB_C PF05491.13 gi|218883997|ref|YP_002428379.1| - 0.097 12.6 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain MCM PF00493.23 gi|218883998|ref|YP_002428380.1| - 1.5e-100 334.9 0.0 2.2e-100 334.3 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|218883998|ref|YP_002428380.1| - 4.1e-37 126.8 0.0 1.2e-36 125.3 0.0 1.7 2 0 0 2 2 2 1 MCM OB domain MCM_lid PF17855.1 gi|218883998|ref|YP_002428380.1| - 1.1e-27 96.2 4.3 1.7e-27 95.6 2.2 2.4 2 0 0 2 2 2 1 MCM AAA-lid domain MCM_N PF14551.6 gi|218883998|ref|YP_002428380.1| - 1.4e-18 67.4 0.9 3.5e-18 66.1 0.1 2.1 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.14 gi|218883998|ref|YP_002428380.1| - 6.1e-09 36.0 0.0 1.4e-08 34.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|218883998|ref|YP_002428380.1| - 4.3e-06 26.3 0.0 0.00078 18.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|218883998|ref|YP_002428380.1| - 0.00029 20.7 0.0 0.00071 19.4 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|218883998|ref|YP_002428380.1| - 0.0041 16.9 0.1 0.046 13.4 0.1 2.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|218883998|ref|YP_002428380.1| - 0.067 13.6 0.2 0.22 11.9 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain tRNA_anti-like PF12869.7 gi|218883998|ref|YP_002428380.1| - 0.12 12.0 0.1 0.25 10.9 0.1 1.5 1 0 0 1 1 1 0 tRNA_anti-like Sld5 PF05916.11 gi|218883999|ref|YP_002428381.1| - 3.3e-05 24.3 0.3 4.8e-05 23.8 0.3 1.3 1 0 0 1 1 1 1 GINS complex protein FMN_bind_2 PF04299.12 gi|218883999|ref|YP_002428381.1| - 0.045 13.5 0.0 0.066 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative FMN-binding domain Rep_fac_C PF08542.11 gi|218884000|ref|YP_002428382.1| - 2.4e-26 92.0 0.2 1.1e-25 89.9 0.0 2.1 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.29 gi|218884000|ref|YP_002428382.1| - 2.8e-15 56.9 0.0 5.3e-15 56.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|218884000|ref|YP_002428382.1| - 8.4e-15 54.9 0.0 8.5e-11 41.9 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|218884000|ref|YP_002428382.1| - 5e-08 32.8 0.0 1.4e-07 31.4 0.0 1.8 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|218884000|ref|YP_002428382.1| - 7.6e-07 29.2 0.0 1.8e-06 28.0 0.0 1.7 2 0 0 2 2 1 1 Rad17 P-loop domain DNA_pol3_delta PF06144.13 gi|218884000|ref|YP_002428382.1| - 2.6e-06 27.3 0.0 7.8e-06 25.8 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_14 PF13173.6 gi|218884000|ref|YP_002428382.1| - 2.9e-06 27.4 0.1 5.8e-05 23.1 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|218884000|ref|YP_002428382.1| - 3.4e-06 27.3 0.2 1.6e-05 25.2 0.1 2.3 2 0 0 2 2 1 1 AAA C-terminal domain AAA_16 PF13191.6 gi|218884000|ref|YP_002428382.1| - 4.8e-06 27.1 0.3 0.0015 18.9 0.0 2.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_5 PF07728.14 gi|218884000|ref|YP_002428382.1| - 1.2e-05 25.4 0.5 9.2e-05 22.5 0.0 2.7 3 2 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|218884000|ref|YP_002428382.1| - 1.3e-05 25.5 1.7 0.19 12.0 0.0 3.1 2 2 1 3 3 3 2 AAA domain AAA_3 PF07726.11 gi|218884000|ref|YP_002428382.1| - 3.7e-05 23.6 0.0 9.1e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|218884000|ref|YP_002428382.1| - 0.00011 21.7 0.0 0.0046 16.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|218884000|ref|YP_002428382.1| - 0.00012 21.8 0.0 0.00026 20.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein PhoH PF02562.16 gi|218884000|ref|YP_002428382.1| - 0.00023 20.7 0.1 0.04 13.4 0.0 2.5 1 1 1 2 2 2 1 PhoH-like protein AAA_18 PF13238.6 gi|218884000|ref|YP_002428382.1| - 0.00025 21.6 0.0 0.0007 20.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|218884000|ref|YP_002428382.1| - 0.00086 19.4 0.0 0.059 13.4 0.0 2.3 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|218884000|ref|YP_002428382.1| - 0.0016 18.0 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region TniB PF05621.11 gi|218884000|ref|YP_002428382.1| - 0.0019 17.6 0.1 0.31 10.4 0.0 2.9 2 1 1 3 3 3 1 Bacterial TniB protein TIP49 PF06068.13 gi|218884000|ref|YP_002428382.1| - 0.0039 16.4 0.0 0.0061 15.8 0.0 1.6 1 1 0 1 1 1 1 TIP49 P-loop domain NTPase_1 PF03266.15 gi|218884000|ref|YP_002428382.1| - 0.0047 16.9 0.0 0.34 10.8 0.0 2.6 1 1 1 2 2 2 1 NTPase Sigma54_activat PF00158.26 gi|218884000|ref|YP_002428382.1| - 0.0056 16.4 0.1 0.29 10.8 0.0 2.7 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_11 PF13086.6 gi|218884000|ref|YP_002428382.1| - 0.0059 16.4 0.0 0.017 14.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|218884000|ref|YP_002428382.1| - 0.0065 15.7 0.0 0.01 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) CbiA PF01656.23 gi|218884000|ref|YP_002428382.1| - 0.0066 16.5 0.0 0.012 15.7 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DNA_pol3_gamma3 PF12169.8 gi|218884000|ref|YP_002428382.1| - 0.0067 16.3 0.3 0.85 9.5 0.0 3.2 3 1 0 3 3 3 1 DNA polymerase III subunits gamma and tau domain III AAA_2 PF07724.14 gi|218884000|ref|YP_002428382.1| - 0.0075 16.4 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|218884000|ref|YP_002428382.1| - 0.015 15.4 0.0 0.034 14.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|218884000|ref|YP_002428382.1| - 0.017 14.7 0.3 0.047 13.3 0.1 2.0 2 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|218884000|ref|YP_002428382.1| - 0.03 14.3 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|218884000|ref|YP_002428382.1| - 0.031 14.0 0.0 0.076 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|218884000|ref|YP_002428382.1| - 0.035 14.6 0.0 0.067 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|218884000|ref|YP_002428382.1| - 0.04 13.8 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.6 gi|218884000|ref|YP_002428382.1| - 0.041 14.2 0.4 0.25 11.6 0.1 2.2 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|218884000|ref|YP_002428382.1| - 0.043 14.2 0.0 0.084 13.3 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|218884000|ref|YP_002428382.1| - 0.044 13.5 0.5 0.29 10.8 0.1 2.5 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|218884000|ref|YP_002428382.1| - 0.045 13.7 0.0 0.47 10.3 0.0 2.4 1 1 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.18 gi|218884000|ref|YP_002428382.1| - 0.051 12.9 0.3 0.32 10.3 0.0 2.3 3 1 0 3 3 2 0 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|218884000|ref|YP_002428382.1| - 0.063 13.5 0.0 0.21 11.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|218884000|ref|YP_002428382.1| - 0.07 12.2 0.0 0.23 10.5 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein Torsin PF06309.11 gi|218884000|ref|YP_002428382.1| - 0.072 13.2 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Torsin NB-ARC PF00931.22 gi|218884000|ref|YP_002428382.1| - 0.089 12.0 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|218884000|ref|YP_002428382.1| - 0.13 11.5 0.0 0.26 10.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.9 gi|218884000|ref|YP_002428382.1| - 0.13 11.4 0.0 0.6 9.3 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|218884000|ref|YP_002428382.1| - 0.16 11.7 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA PF00004.29 gi|218884001|ref|YP_002428383.1| - 4.7e-15 56.2 0.0 1.2e-14 54.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|218884001|ref|YP_002428383.1| - 1.8e-09 37.8 0.2 2.8e-08 33.9 0.1 2.5 2 1 1 3 3 3 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|218884001|ref|YP_002428383.1| - 1.2e-07 31.6 0.0 2.2e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|218884001|ref|YP_002428383.1| - 4.5e-07 30.4 0.3 2.3e-06 28.1 0.1 2.4 2 1 0 2 2 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|218884001|ref|YP_002428383.1| - 1.6e-06 28.2 0.0 1.6e-05 24.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|218884001|ref|YP_002428383.1| - 4.4e-06 26.0 0.0 7.7e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|218884001|ref|YP_002428383.1| - 1.6e-05 24.9 0.0 3.7e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|218884001|ref|YP_002428383.1| - 3.6e-05 24.0 0.1 0.00016 22.0 0.0 2.2 2 0 0 2 2 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|218884001|ref|YP_002428383.1| - 5.9e-05 23.4 0.2 0.0096 16.2 0.1 3.3 2 1 1 3 3 3 1 AAA domain RFC1 PF08519.12 gi|218884001|ref|YP_002428383.1| - 0.00012 22.2 0.0 0.00024 21.3 0.0 1.5 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_33 PF13671.6 gi|218884001|ref|YP_002428383.1| - 0.00018 21.7 0.0 0.00039 20.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.13 gi|218884001|ref|YP_002428383.1| - 0.00062 19.6 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit IstB_IS21 PF01695.17 gi|218884001|ref|YP_002428383.1| - 0.00081 19.2 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|218884001|ref|YP_002428383.1| - 0.0011 19.2 0.0 0.0026 18.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|218884001|ref|YP_002428383.1| - 0.0014 18.4 0.0 0.0032 17.2 0.0 1.6 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 gi|218884001|ref|YP_002428383.1| - 0.0019 18.8 0.0 0.011 16.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|218884001|ref|YP_002428383.1| - 0.0023 18.0 0.0 0.0049 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_11 PF13086.6 gi|218884001|ref|YP_002428383.1| - 0.0059 16.4 0.0 0.035 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain DNA_pol3_delta2 PF13177.6 gi|218884001|ref|YP_002428383.1| - 0.0063 16.3 0.0 0.18 11.6 0.1 2.4 1 1 1 2 2 2 1 DNA polymerase III, delta subunit NTPase_1 PF03266.15 gi|218884001|ref|YP_002428383.1| - 0.016 15.2 0.1 4.9 7.0 0.0 2.4 1 1 1 2 2 2 0 NTPase NACHT PF05729.12 gi|218884001|ref|YP_002428383.1| - 0.017 15.0 0.7 0.24 11.3 0.0 3.0 3 1 1 4 4 4 0 NACHT domain AAA_6 PF12774.7 gi|218884001|ref|YP_002428383.1| - 0.018 14.0 0.0 0.035 13.1 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_7 PF12775.7 gi|218884001|ref|YP_002428383.1| - 0.019 14.5 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|218884001|ref|YP_002428383.1| - 0.022 14.4 0.0 0.057 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|218884001|ref|YP_002428383.1| - 0.023 15.1 0.1 0.079 13.4 0.0 2.0 2 0 0 2 2 1 0 AAA domain TniB PF05621.11 gi|218884001|ref|YP_002428383.1| - 0.024 14.1 0.0 0.075 12.4 0.0 1.8 2 0 0 2 2 1 0 Bacterial TniB protein ABC_tran PF00005.27 gi|218884001|ref|YP_002428383.1| - 0.028 15.0 0.0 0.14 12.7 0.0 2.0 1 1 1 2 2 2 0 ABC transporter AAA_23 PF13476.6 gi|218884001|ref|YP_002428383.1| - 0.031 14.8 0.0 0.13 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|218884001|ref|YP_002428383.1| - 0.038 14.4 0.0 0.11 12.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase DUF1361 PF07099.11 gi|218884001|ref|YP_002428383.1| - 0.047 13.7 0.0 0.081 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1361) Zeta_toxin PF06414.12 gi|218884001|ref|YP_002428383.1| - 0.049 12.9 0.0 0.091 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TIP49 PF06068.13 gi|218884001|ref|YP_002428383.1| - 0.059 12.6 0.1 0.14 11.4 0.0 1.7 2 1 0 2 2 1 0 TIP49 P-loop domain NB-ARC PF00931.22 gi|218884001|ref|YP_002428383.1| - 0.076 12.2 0.0 0.25 10.5 0.0 1.9 1 1 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|218884001|ref|YP_002428383.1| - 0.076 13.0 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NAPRTase_C PF17956.1 gi|218884001|ref|YP_002428383.1| - 0.088 13.2 0.1 1.3 9.5 0.0 2.3 2 0 0 2 2 2 0 Nicotinate phosphoribosyltransferase C-terminal domain TraC_F_IV PF11130.8 gi|218884001|ref|YP_002428383.1| - 0.097 12.3 0.1 4.9 6.7 0.0 2.3 2 1 0 2 2 2 0 F pilus assembly Type-IV secretion system for plasmid transfer ThiI PF02568.14 gi|218884002|ref|YP_002428384.1| - 1e-51 175.4 0.0 1.9e-51 174.5 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|218884002|ref|YP_002428384.1| - 7e-21 74.8 2.4 7e-21 74.8 2.4 1.6 2 0 0 2 2 2 1 THUMP domain Rhodanese PF00581.20 gi|218884002|ref|YP_002428384.1| - 1.2e-08 35.5 0.0 9.1e-08 32.6 0.0 2.3 1 1 0 1 1 1 1 Rhodanese-like domain QueC PF06508.13 gi|218884002|ref|YP_002428384.1| - 3.6e-06 26.6 0.0 0.00028 20.5 0.0 2.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|218884002|ref|YP_002428384.1| - 0.0014 18.2 0.2 0.0063 16.0 0.0 2.1 2 0 0 2 2 2 1 Diphthamide synthase ATP_bind_3 PF01171.20 gi|218884002|ref|YP_002428384.1| - 0.01 15.6 0.0 0.038 13.7 0.0 1.9 1 1 0 1 1 1 0 PP-loop family tRNA_Me_trans PF03054.16 gi|218884002|ref|YP_002428384.1| - 0.086 11.6 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase DUF432 PF04254.13 gi|218884003|ref|YP_002428385.1| - 7.8e-33 113.3 0.1 1.1e-32 112.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.18 gi|218884004|ref|YP_002428386.1| - 3.6e-47 160.6 1.2 3.6e-47 160.6 1.2 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|218884004|ref|YP_002428386.1| - 0.00021 21.2 6.6 0.00021 21.2 6.6 2.6 2 0 0 2 2 2 1 Conserved TM helix DUF5446 PF17522.2 gi|218884005|ref|YP_002428387.1| - 0.39 10.9 2.8 0.51 10.5 0.9 2.2 2 1 1 3 3 3 0 Family of unknown function (DUF5446) RGI_lyase PF18370.1 gi|218884006|ref|YP_002428388.1| - 0.035 14.4 0.0 0.11 12.9 0.0 1.8 1 0 0 1 1 1 0 Rhamnogalacturonan I lyases beta-sheet domain PIGA PF08288.12 gi|218884006|ref|YP_002428388.1| - 0.078 13.6 2.1 0.14 12.7 0.3 2.1 2 0 0 2 2 2 0 PIGA (GPI anchor biosynthesis) DUF1030 PF06270.11 gi|218884006|ref|YP_002428388.1| - 7.2 6.4 9.4 3.1 7.6 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1030) T2SSE PF00437.20 gi|218884009|ref|YP_002428391.1| - 5.9e-38 130.5 0.0 9.5e-38 129.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein cobW PF02492.19 gi|218884009|ref|YP_002428391.1| - 0.00015 21.4 0.0 0.00031 20.4 0.0 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|218884009|ref|YP_002428391.1| - 0.00094 19.5 0.0 0.0033 17.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|218884009|ref|YP_002428391.1| - 0.002 18.5 0.0 0.0037 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|218884009|ref|YP_002428391.1| - 0.0028 18.2 0.0 0.0049 17.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_30 PF13604.6 gi|218884009|ref|YP_002428391.1| - 0.0065 16.2 0.0 0.016 14.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|218884009|ref|YP_002428391.1| - 0.0083 16.1 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|218884009|ref|YP_002428391.1| - 0.01 16.2 0.0 0.021 15.2 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|218884009|ref|YP_002428391.1| - 0.011 16.1 0.0 0.029 14.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|218884009|ref|YP_002428391.1| - 0.013 15.0 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|218884009|ref|YP_002428391.1| - 0.014 15.0 0.0 0.046 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|218884009|ref|YP_002428391.1| - 0.021 14.2 0.0 0.041 13.2 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_5 PF07728.14 gi|218884009|ref|YP_002428391.1| - 0.023 14.7 0.0 0.076 13.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|218884009|ref|YP_002428391.1| - 0.034 14.0 0.0 0.14 12.1 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_29 PF13555.6 gi|218884009|ref|YP_002428391.1| - 0.037 13.8 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|218884009|ref|YP_002428391.1| - 0.037 14.6 0.0 0.081 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|218884009|ref|YP_002428391.1| - 0.038 13.7 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.6 gi|218884009|ref|YP_002428391.1| - 0.042 14.0 0.0 0.068 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|218884009|ref|YP_002428391.1| - 0.055 13.3 0.0 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|218884009|ref|YP_002428391.1| - 0.063 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|218884009|ref|YP_002428391.1| - 0.065 12.5 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.6 gi|218884009|ref|YP_002428391.1| - 0.089 13.3 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|218884009|ref|YP_002428391.1| - 0.1 11.8 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|218884009|ref|YP_002428391.1| - 0.14 11.8 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.6 gi|218884009|ref|YP_002428391.1| - 0.18 11.8 0.0 0.38 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 gi|218884009|ref|YP_002428391.1| - 0.19 11.2 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein Mg_chelatase PF01078.21 gi|218884009|ref|YP_002428391.1| - 0.19 11.1 0.0 0.32 10.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF2613 PF11021.8 gi|218884010|ref|YP_002428392.1| - 0.031 14.4 0.7 0.084 13.0 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) Pilin_N PF07790.11 gi|218884010|ref|YP_002428392.1| - 0.12 13.3 7.4 0.22 12.4 6.9 1.8 1 1 1 2 2 2 0 Archaeal Type IV pilin, N-terminal MG2 PF01835.19 gi|218884011|ref|YP_002428393.1| - 0.034 14.6 0.4 4.6 7.8 0.3 2.4 2 0 0 2 2 2 0 MG2 domain DUF996 PF06195.13 gi|218884012|ref|YP_002428394.1| - 2.2e-32 112.1 24.1 2.2e-32 112.1 24.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF973 PF06157.11 gi|218884012|ref|YP_002428394.1| - 1.5 7.8 32.6 15 4.5 15.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF973) TMEM210 PF15195.6 gi|218884012|ref|YP_002428394.1| - 6.1 7.3 5.7 1.1 9.7 0.6 2.2 2 0 0 2 2 2 0 TMEM210 family DUF87 PF01935.17 gi|218884015|ref|YP_002428397.1| - 4.7e-14 53.0 0.0 8.2e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|218884015|ref|YP_002428397.1| - 8e-13 48.1 0.0 7.5e-06 25.1 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 gi|218884015|ref|YP_002428397.1| - 2.9e-06 26.4 0.0 0.0031 16.4 0.0 2.3 2 0 0 2 2 2 2 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 gi|218884015|ref|YP_002428397.1| - 7.1e-06 26.0 0.0 1.3e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.6 gi|218884015|ref|YP_002428397.1| - 4.5e-05 23.7 0.0 0.031 14.5 0.0 2.8 2 1 1 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|218884015|ref|YP_002428397.1| - 0.001 18.8 0.0 0.015 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|218884015|ref|YP_002428397.1| - 0.0013 19.2 0.1 0.28 11.5 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain DUF853 PF05872.12 gi|218884015|ref|YP_002428397.1| - 0.0069 15.0 0.0 0.011 14.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 gi|218884015|ref|YP_002428397.1| - 0.007 15.7 0.0 0.036 13.4 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family ABC_tran PF00005.27 gi|218884015|ref|YP_002428397.1| - 0.015 15.8 0.0 0.039 14.5 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_10 PF12846.7 gi|218884015|ref|YP_002428397.1| - 0.022 13.7 0.0 0.035 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.6 gi|218884015|ref|YP_002428397.1| - 0.036 14.4 0.0 0.67 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|218884015|ref|YP_002428397.1| - 0.039 13.7 0.0 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 DEAD/DEAH box helicase T2SSE PF00437.20 gi|218884015|ref|YP_002428397.1| - 0.058 12.5 0.0 0.096 11.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Roc PF08477.13 gi|218884015|ref|YP_002428397.1| - 0.11 12.7 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ATPase_2 PF01637.18 gi|218884015|ref|YP_002428397.1| - 0.14 12.1 0.0 0.76 9.6 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|218884015|ref|YP_002428397.1| - 0.17 11.8 0.0 0.36 10.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Pox_A32 PF04665.12 gi|218884015|ref|YP_002428397.1| - 0.23 10.9 0.0 0.44 10.0 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein DUF1129 PF06570.11 gi|218884016|ref|YP_002428398.1| - 0.12 11.8 0.8 0.16 11.4 0.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) AAA_10 PF12846.7 gi|218884017|ref|YP_002428399.1| - 3.9e-13 49.1 0.0 1.3e-06 27.6 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 gi|218884017|ref|YP_002428399.1| - 1.3e-05 25.4 0.0 2.4e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|218884017|ref|YP_002428399.1| - 0.00016 22.0 0.0 0.11 12.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.9 gi|218884017|ref|YP_002428399.1| - 0.008 15.1 0.0 0.47 9.3 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|218884017|ref|YP_002428399.1| - 0.043 12.4 0.0 0.16 10.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) MeaB PF03308.16 gi|218884017|ref|YP_002428399.1| - 0.049 12.6 0.0 0.1 11.6 0.0 1.5 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|218884017|ref|YP_002428399.1| - 0.096 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF2672 PF10878.8 gi|218884017|ref|YP_002428399.1| - 0.13 12.3 0.4 1.6 8.8 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2672) AAA_7 PF12775.7 gi|218884017|ref|YP_002428399.1| - 0.24 10.9 0.0 0.41 10.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region PrgI PF12666.7 gi|218884018|ref|YP_002428400.1| - 0.02 15.6 0.0 0.025 15.3 0.0 1.2 1 0 0 1 1 1 0 PrgI family protein Integrase_DNA PF02920.15 gi|218884020|ref|YP_002428402.1| - 0.17 11.6 0.0 0.2 11.4 0.0 1.1 1 0 0 1 1 1 0 DNA binding domain of tn916 integrase Raffinose_syn PF05691.12 gi|218884021|ref|YP_002428403.1| - 9.4e-43 146.0 0.1 4.9e-37 127.2 0.1 3.8 1 1 0 1 1 1 1 Raffinose synthase or seed imbibition protein Sip1 Glyco_hydro_31 PF01055.26 gi|218884021|ref|YP_002428403.1| - 0.00043 19.6 0.0 0.00062 19.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 MFS_1 PF07690.16 gi|218884022|ref|YP_002428404.1| - 4.4e-50 170.6 45.3 6.6e-41 140.4 34.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|218884022|ref|YP_002428404.1| - 1.8e-17 63.3 23.1 3.5e-13 49.2 8.8 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter ATG22 PF11700.8 gi|218884022|ref|YP_002428404.1| - 1.7e-06 26.9 20.3 1.8e-06 26.9 4.6 2.6 2 1 0 2 2 2 2 Vacuole effluxer Atg22 like E1-E2_ATPase PF00122.20 gi|218884022|ref|YP_002428404.1| - 0.091 12.3 0.3 0.091 12.3 0.3 3.1 4 0 0 4 4 4 0 E1-E2 ATPase EpuA PF11772.8 gi|218884022|ref|YP_002428404.1| - 0.23 11.2 5.8 1 9.1 5.8 2.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta OATP PF03137.20 gi|218884022|ref|YP_002428404.1| - 1.9 6.7 16.6 0.068 11.4 0.9 3.7 2 2 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family FmdA_AmdA PF03069.15 gi|218884023|ref|YP_002428405.1| - 5.9e-36 124.1 0.8 1.7e-19 69.9 0.7 2.8 1 1 1 2 2 2 2 Acetamidase/Formamidase family Peptidase_S24 PF00717.23 gi|218884023|ref|YP_002428405.1| - 0.1 12.5 0.6 7.1 6.7 0.0 2.6 1 1 1 2 2 2 0 Peptidase S24-like Thi4 PF01946.17 gi|218884024|ref|YP_002428406.1| - 1.5e-75 253.4 0.2 1.8e-75 253.2 0.2 1.0 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|218884024|ref|YP_002428406.1| - 7.1e-13 48.4 3.3 5.2e-06 25.8 0.6 3.1 2 1 1 3 3 3 3 FAD binding domain DAO PF01266.24 gi|218884024|ref|YP_002428406.1| - 6.2e-11 42.5 4.0 9e-07 28.8 1.4 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|218884024|ref|YP_002428406.1| - 2.8e-09 36.8 0.3 4.1e-09 36.3 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|218884024|ref|YP_002428406.1| - 6.5e-08 32.7 1.0 1.8e-07 31.3 1.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|218884024|ref|YP_002428406.1| - 4.1e-07 29.5 0.2 5.3e-07 29.2 0.2 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|218884024|ref|YP_002428406.1| - 8.9e-07 28.5 0.4 1.1e-06 28.2 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|218884024|ref|YP_002428406.1| - 2.5e-05 23.2 1.2 4.4e-05 22.4 1.2 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|218884024|ref|YP_002428406.1| - 0.0005 19.4 0.0 0.00096 18.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|218884024|ref|YP_002428406.1| - 0.00065 20.2 0.5 0.0019 18.7 0.5 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|218884024|ref|YP_002428406.1| - 0.00092 18.6 0.2 0.0017 17.7 0.2 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|218884024|ref|YP_002428406.1| - 0.0023 17.1 0.9 0.0044 16.2 0.9 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|218884024|ref|YP_002428406.1| - 0.0042 17.1 0.0 0.0083 16.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase K_oxygenase PF13434.6 gi|218884024|ref|YP_002428406.1| - 0.016 14.4 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|218884024|ref|YP_002428406.1| - 0.017 14.2 0.0 0.035 13.2 0.0 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein ThiF PF00899.21 gi|218884024|ref|YP_002428406.1| - 0.044 13.1 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 ThiF family Trp_halogenase PF04820.14 gi|218884024|ref|YP_002428406.1| - 0.12 11.2 0.6 0.17 10.7 0.5 1.4 1 1 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|218884024|ref|YP_002428406.1| - 0.14 12.2 0.3 0.34 10.9 0.2 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding Phos_pyr_kin PF08543.12 gi|218884025|ref|YP_002428407.1| - 1.7e-93 312.5 0.3 2.8e-93 311.8 0.3 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|218884025|ref|YP_002428407.1| - 7.3e-54 181.8 3.3 7.3e-54 181.8 3.3 1.9 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|218884025|ref|YP_002428407.1| - 9.2e-09 35.0 0.4 3.2e-08 33.3 0.4 1.8 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Nif11 PF07862.11 gi|218884025|ref|YP_002428407.1| - 0.034 14.5 0.1 0.58 10.5 0.0 2.6 2 0 0 2 2 2 0 Nif11 domain PBP_like PF12727.7 gi|218884026|ref|YP_002428408.1| - 2.2e-53 180.3 0.0 3.6e-53 179.6 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|218884026|ref|YP_002428408.1| - 5.5e-39 133.5 0.2 1.4e-38 132.1 0.2 1.7 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|218884026|ref|YP_002428408.1| - 3.4e-25 88.4 0.0 2.5e-24 85.6 0.0 2.3 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|218884026|ref|YP_002428408.1| - 1.9e-11 44.0 0.0 6.4e-11 42.3 0.0 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|218884026|ref|YP_002428408.1| - 0.17 11.6 0.0 0.61 9.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein DEAD PF00270.29 gi|218884027|ref|YP_002428409.1| - 2.2e-23 82.9 0.0 4.1e-23 82.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|218884027|ref|YP_002428409.1| - 2.6e-07 30.9 0.0 7.3e-07 29.5 0.0 1.8 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|218884027|ref|YP_002428409.1| - 5.8e-07 30.0 0.4 2.1e-06 28.3 0.4 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|218884027|ref|YP_002428409.1| - 0.00099 19.2 0.0 0.0039 17.3 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA_30 PF13604.6 gi|218884027|ref|YP_002428409.1| - 0.055 13.2 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain T2SSF PF00482.23 gi|218884027|ref|YP_002428409.1| - 0.12 12.4 0.0 12 5.9 0.0 2.9 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F RNA_pol_A_CTD PF03118.15 gi|218884027|ref|YP_002428409.1| - 0.17 11.7 0.0 0.45 10.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain DNA_pol_lambd_f PF10391.9 gi|218884027|ref|YP_002428409.1| - 0.18 11.7 0.0 0.62 9.9 0.0 1.9 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda UPRTase PF14681.6 gi|218884028|ref|YP_002428410.1| - 1.9e-33 115.6 0.0 2.3e-33 115.4 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|218884028|ref|YP_002428410.1| - 6.1e-13 48.6 0.0 1.9e-12 47.0 0.0 1.7 1 1 1 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|218884028|ref|YP_002428410.1| - 0.16 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase ParA PF10609.9 gi|218884029|ref|YP_002428411.1| - 1.6e-41 142.4 0.0 2.2e-41 141.9 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|218884029|ref|YP_002428411.1| - 1.6e-10 41.1 0.0 2.5e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|218884029|ref|YP_002428411.1| - 0.0016 18.4 0.0 0.0063 16.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|218884029|ref|YP_002428411.1| - 0.0034 16.6 0.1 0.017 14.4 0.0 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase HypA PF01155.19 gi|218884030|ref|YP_002428412.1| - 1.3e-17 63.8 0.0 1.8e-17 63.4 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|218884030|ref|YP_002428412.1| - 0.00021 21.6 0.0 0.12 12.8 0.0 2.2 2 0 0 2 2 2 2 Restriction alleviation protein Lar TFIIS_C PF01096.18 gi|218884030|ref|YP_002428412.1| - 0.0037 17.1 1.6 1 9.3 0.1 2.3 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.6 gi|218884030|ref|YP_002428412.1| - 0.0059 16.5 0.2 3.4 7.7 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.9 gi|218884030|ref|YP_002428412.1| - 0.01 15.9 3.3 0.47 10.6 0.0 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.13 gi|218884030|ref|YP_002428412.1| - 0.015 15.0 0.1 1.7 8.4 0.0 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2387 PF09526.10 gi|218884030|ref|YP_002428412.1| - 0.016 15.4 0.9 1.1 9.5 0.0 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.12 gi|218884030|ref|YP_002428412.1| - 0.022 14.3 0.6 0.21 11.1 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|218884030|ref|YP_002428412.1| - 0.022 14.4 0.0 4 7.2 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S27 Zn_Tnp_IS1595 PF12760.7 gi|218884030|ref|YP_002428412.1| - 0.024 14.6 1.5 0.3 11.1 0.1 2.2 1 1 0 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|218884030|ref|YP_002428412.1| - 0.024 14.6 2.5 4.5 7.3 0.1 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon CpXC PF14353.6 gi|218884030|ref|YP_002428412.1| - 0.031 14.3 1.3 1 9.4 0.0 2.4 1 1 1 2 2 2 0 CpXC protein zf-ribbon_3 PF13248.6 gi|218884030|ref|YP_002428412.1| - 0.034 13.6 1.1 0.78 9.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-CSL PF05207.13 gi|218884030|ref|YP_002428412.1| - 0.039 13.7 0.3 0.082 12.6 0.3 1.5 1 1 0 1 1 1 0 CSL zinc finger RNA_POL_M_15KD PF02150.16 gi|218884030|ref|YP_002428412.1| - 0.04 13.8 1.3 0.86 9.5 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|218884030|ref|YP_002428412.1| - 0.07 12.9 0.9 1.9 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|218884030|ref|YP_002428412.1| - 0.083 12.6 0.7 0.32 10.7 0.1 2.0 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|218884030|ref|YP_002428412.1| - 0.17 12.0 3.3 3.4 7.9 3.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|218884030|ref|YP_002428412.1| - 0.31 11.0 1.4 0.6 10.1 0.1 2.0 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-H2C2_2 PF13465.6 gi|218884030|ref|YP_002428412.1| - 0.4 11.2 1.8 26 5.5 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2HC_2 PF13913.6 gi|218884030|ref|YP_002428412.1| - 1.6 8.7 5.5 2 8.4 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type HMG-CoA_red PF00368.18 gi|218884031|ref|YP_002428413.1| - 1.2e-105 353.6 5.6 1.4e-105 353.4 5.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CN_hydrolase PF00795.22 gi|218884032|ref|YP_002428414.1| - 7.3e-31 107.4 0.0 8.4e-31 107.3 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DpnD-PcfM PF14207.6 gi|218884032|ref|YP_002428414.1| - 0.016 15.1 0.0 0.035 14.0 0.0 1.6 1 0 0 1 1 1 0 DpnD/PcfM-like protein HATPase_c PF02518.26 gi|218884032|ref|YP_002428414.1| - 0.15 12.6 0.0 0.21 12.1 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATP_bind_3 PF01171.20 gi|218884033|ref|YP_002428415.1| - 3.1e-20 72.7 0.0 5.7e-20 71.8 0.0 1.4 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|218884033|ref|YP_002428415.1| - 7.2e-05 22.9 0.0 0.00012 22.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.15 gi|218884033|ref|YP_002428415.1| - 0.0012 18.4 7.1 0.0017 17.9 1.0 3.1 3 0 0 3 3 3 1 RecR protein CTU2 PF10288.9 gi|218884033|ref|YP_002428415.1| - 0.0018 18.5 0.3 0.0078 16.5 0.0 2.1 2 0 0 2 2 2 1 Cytoplasmic tRNA 2-thiolation protein 2 Vps36-NZF-N PF16988.5 gi|218884033|ref|YP_002428415.1| - 0.046 13.1 1.9 6.5 6.2 0.0 3.0 3 1 0 3 3 3 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain NAD_synthase PF02540.17 gi|218884033|ref|YP_002428415.1| - 0.055 12.6 0.0 0.078 12.1 0.0 1.2 1 0 0 1 1 1 0 NAD synthase C1_2 PF03107.16 gi|218884033|ref|YP_002428415.1| - 0.49 10.8 7.5 0.45 10.9 0.2 3.3 3 0 0 3 3 3 0 C1 domain zn-ribbon_14 PF16503.5 gi|218884033|ref|YP_002428415.1| - 5.6 6.6 16.4 0.04 13.4 3.4 3.0 3 0 0 3 3 3 0 Zinc-ribbon DUF2672 PF10878.8 gi|218884034|ref|YP_002428416.1| - 0.042 13.8 0.2 0.053 13.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2672) Acetyltransf_4 PF13420.7 gi|218884034|ref|YP_002428416.1| - 0.064 13.4 0.1 0.068 13.3 0.1 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ATP-grasp_5 PF13549.6 gi|218884036|ref|YP_002428418.1| - 6.2e-76 254.7 0.1 7.5e-76 254.5 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|218884036|ref|YP_002428418.1| - 0.00063 19.4 0.0 0.00073 19.1 0.0 1.3 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|218884036|ref|YP_002428418.1| - 0.048 13.1 0.1 0.11 12.0 0.1 1.5 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain TPP_enzyme_C PF02775.21 gi|218884037|ref|YP_002428419.1| - 5.4e-28 97.7 0.0 1e-27 96.8 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|218884037|ref|YP_002428419.1| - 1.1e-18 67.9 0.0 1.8e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|218884037|ref|YP_002428419.1| - 2.8e-10 39.6 12.5 2e-06 27.4 4.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|218884037|ref|YP_002428419.1| - 2.5e-06 27.2 0.5 0.00011 21.9 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_2 PF12797.7 gi|218884037|ref|YP_002428419.1| - 7.7e-06 25.7 18.1 0.00051 20.0 3.9 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|218884037|ref|YP_002428419.1| - 7.5e-05 23.2 10.7 0.05 14.2 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218884037|ref|YP_002428419.1| - 7.9e-05 22.6 19.1 0.0074 16.3 2.6 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|218884037|ref|YP_002428419.1| - 9.1e-05 22.5 11.2 0.00019 21.5 11.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|218884037|ref|YP_002428419.1| - 0.0002 21.4 10.5 0.00042 20.4 10.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|218884037|ref|YP_002428419.1| - 0.0003 21.1 12.9 0.11 13.1 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|218884037|ref|YP_002428419.1| - 0.00081 19.5 11.9 0.0024 18.0 11.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain DXP_synthase_N PF13292.6 gi|218884037|ref|YP_002428419.1| - 0.018 14.3 0.0 0.029 13.6 0.0 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_C PF02780.20 gi|218884037|ref|YP_002428419.1| - 0.077 12.9 0.0 0.34 10.8 0.0 2.1 2 0 0 2 2 2 0 Transketolase, C-terminal domain Fer4_3 PF12798.7 gi|218884037|ref|YP_002428419.1| - 0.12 13.4 12.9 0.1 13.6 3.6 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|218884037|ref|YP_002428419.1| - 2.1 9.1 11.2 3.4 8.5 1.7 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|218884037|ref|YP_002428419.1| - 2.3 8.8 13.3 1.3 9.6 2.7 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|218884037|ref|YP_002428419.1| - 7.5 7.6 11.3 3.6 8.6 1.1 2.5 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|218884037|ref|YP_002428419.1| - 7.6 7.1 13.3 15 6.1 3.0 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|218884038|ref|YP_002428420.1| - 1.8e-32 112.8 0.2 2.1e-32 112.6 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Flavodoxin_5 PF12724.7 gi|218884039|ref|YP_002428421.1| - 2.8e-07 30.9 0.0 3.6e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|218884039|ref|YP_002428421.1| - 1.7e-05 24.5 0.0 0.0075 16.0 0.0 2.4 1 1 1 2 2 2 2 Flavodoxin domain Amidohydro_3 PF07969.11 gi|218884041|ref|YP_002428423.1| - 6.2e-112 375.5 0.0 7e-112 375.3 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|218884041|ref|YP_002428423.1| - 1e-17 64.5 0.0 2e-13 50.4 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family Aminotran_3 PF00202.21 gi|218884043|ref|YP_002428425.1| - 2.6e-11 42.8 0.0 2.9e-11 42.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III ThiS PF02597.20 gi|218884045|ref|YP_002428427.1| - 2.1e-09 37.9 0.2 2.3e-09 37.8 0.2 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|218884045|ref|YP_002428427.1| - 0.00014 21.8 0.2 0.00027 20.9 0.2 1.4 1 0 0 1 1 1 1 TGS domain Ub-Mut7C PF14451.6 gi|218884045|ref|YP_002428427.1| - 0.027 14.3 0.1 0.058 13.2 0.1 1.6 1 1 0 1 1 1 0 Mut7-C ubiquitin DUF4404 PF14357.6 gi|218884045|ref|YP_002428427.1| - 0.092 13.4 0.2 0.14 12.8 0.1 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) Fer2_2 PF01799.20 gi|218884046|ref|YP_002428428.1| - 1.2e-26 92.5 0.1 1.2e-26 92.5 0.1 1.5 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|218884046|ref|YP_002428428.1| - 2.8e-08 33.6 0.8 2.8e-08 33.6 0.8 2.1 2 2 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|218884046|ref|YP_002428428.1| - 7.7e-05 22.7 0.4 7.7e-05 22.7 0.4 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.9 gi|218884046|ref|YP_002428428.1| - 0.018 14.8 3.2 0.018 14.8 3.2 1.8 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_4 PF13510.6 gi|218884046|ref|YP_002428428.1| - 0.12 12.4 2.6 1.3 9.2 2.6 2.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Tricorn_PDZ PF14685.6 gi|218884046|ref|YP_002428428.1| - 0.15 12.0 0.4 2.9 7.9 0.0 2.6 2 1 1 3 3 3 0 Tricorn protease PDZ domain FAD_binding_5 PF00941.21 gi|218884047|ref|YP_002428429.1| - 3e-54 183.3 0.0 4.5e-54 182.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|218884047|ref|YP_002428429.1| - 7.3e-23 80.7 0.2 1.2e-22 80.1 0.2 1.3 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.18 gi|218884048|ref|YP_002428430.1| - 2.9e-133 445.3 0.0 3.9e-133 444.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|218884048|ref|YP_002428430.1| - 1.1e-19 70.8 0.0 2.1e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 gi|218884049|ref|YP_002428431.1| - 9.4e-22 76.8 0.0 9.4e-22 76.8 0.0 1.4 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|218884049|ref|YP_002428431.1| - 1.1e-06 28.4 2.0 1.7e-06 27.9 0.1 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|218884049|ref|YP_002428431.1| - 5.8e-06 26.3 0.1 8.9e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|218884049|ref|YP_002428431.1| - 0.0094 16.0 0.7 0.088 12.9 0.8 2.4 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_BFD PF04324.15 gi|218884049|ref|YP_002428431.1| - 0.34 11.3 4.5 5.7 7.4 0.2 3.5 3 1 1 4 4 4 0 BFD-like [2Fe-2S] binding domain FAD_binding_5 PF00941.21 gi|218884050|ref|YP_002428432.1| - 4.1e-54 182.9 0.0 6e-54 182.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|218884050|ref|YP_002428432.1| - 8.6e-28 96.5 0.1 1.5e-27 95.8 0.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.18 gi|218884051|ref|YP_002428433.1| - 1.5e-177 591.4 0.1 1.8e-177 591.1 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|218884051|ref|YP_002428433.1| - 1.1e-19 70.8 0.0 2.8e-19 69.5 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amidohydro_1 PF01979.20 gi|218884052|ref|YP_002428434.1| - 1.2e-22 80.8 0.0 4e-22 79.0 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|218884052|ref|YP_002428434.1| - 9.8e-16 58.3 0.3 1.1e-07 31.7 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family OTCace_N PF02729.21 gi|218884053|ref|YP_002428435.1| - 6.6e-41 139.8 0.0 1.1e-40 139.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|218884053|ref|YP_002428435.1| - 4e-27 95.2 0.0 6.1e-27 94.6 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF4917 PF16263.5 gi|218884053|ref|YP_002428435.1| - 0.015 14.7 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4917) Myc-LZ PF02344.15 gi|218884053|ref|YP_002428435.1| - 0.25 11.4 0.8 0.88 9.7 0.1 2.2 2 0 0 2 2 2 0 Myc leucine zipper domain TFX_C PF14601.6 gi|218884055|ref|YP_002428437.1| - 3.4e-12 46.1 0.0 4.7e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|218884055|ref|YP_002428437.1| - 1.7e-10 40.3 2.1 3e-10 39.4 2.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|218884055|ref|YP_002428437.1| - 4e-10 39.1 0.3 7.1e-10 38.3 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|218884055|ref|YP_002428437.1| - 3.1e-07 30.0 0.5 6.9e-07 28.9 0.5 1.7 1 1 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.22 gi|218884055|ref|YP_002428437.1| - 1.2e-06 28.5 0.3 2.5e-06 27.4 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|218884055|ref|YP_002428437.1| - 4.3e-06 26.3 0.7 8.3e-06 25.4 0.1 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|218884055|ref|YP_002428437.1| - 9.2e-06 25.3 0.1 2e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|218884055|ref|YP_002428437.1| - 9.4e-06 25.6 0.3 3.7e-05 23.6 0.3 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|218884055|ref|YP_002428437.1| - 4.5e-05 23.5 0.1 0.00011 22.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|218884055|ref|YP_002428437.1| - 0.0004 20.7 0.2 0.00071 19.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|218884055|ref|YP_002428437.1| - 0.0011 18.5 0.1 0.0027 17.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_7 PF02796.15 gi|218884055|ref|YP_002428437.1| - 0.0016 18.5 0.9 0.0038 17.3 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|218884055|ref|YP_002428437.1| - 0.0022 17.8 0.1 0.0089 15.9 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_10 PF04967.12 gi|218884055|ref|YP_002428437.1| - 0.0023 17.7 2.4 0.14 12.0 0.2 3.3 3 1 0 3 3 3 1 HTH DNA binding domain HTH_37 PF13744.6 gi|218884055|ref|YP_002428437.1| - 0.0029 17.5 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|218884055|ref|YP_002428437.1| - 0.0038 17.1 0.1 0.0093 15.9 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|218884055|ref|YP_002428437.1| - 0.0042 17.0 0.0 0.017 15.1 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_25 PF13413.6 gi|218884055|ref|YP_002428437.1| - 0.0045 16.8 0.2 0.012 15.4 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|218884055|ref|YP_002428437.1| - 0.0061 16.7 0.1 0.012 15.8 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|218884055|ref|YP_002428437.1| - 0.0067 16.4 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_8 PF02954.19 gi|218884055|ref|YP_002428437.1| - 0.019 14.7 0.8 0.069 12.9 0.1 2.3 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family TnsD PF15978.5 gi|218884055|ref|YP_002428437.1| - 0.021 13.9 0.1 0.025 13.6 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D MarR PF01047.22 gi|218884055|ref|YP_002428437.1| - 0.031 14.2 0.0 0.059 13.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|218884055|ref|YP_002428437.1| - 0.062 13.1 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain UPF0122 PF04297.14 gi|218884055|ref|YP_002428437.1| - 0.078 13.2 0.2 0.12 12.6 0.2 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_ECF PF07638.11 gi|218884055|ref|YP_002428437.1| - 0.099 12.5 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 ECF sigma factor PALP PF00291.25 gi|218884056|ref|YP_002428438.1| - 5.2e-41 141.0 0.0 6.3e-41 140.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme FtsA PF14450.6 gi|218884056|ref|YP_002428438.1| - 0.039 14.4 0.0 0.075 13.5 0.0 1.6 1 1 0 1 1 1 0 Cell division protein FtsA AA_permease_2 PF13520.6 gi|218884057|ref|YP_002428439.1| - 4.1e-14 52.3 66.8 1.1e-13 50.8 66.8 1.7 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|218884057|ref|YP_002428439.1| - 2.1e-08 33.2 59.3 3.1e-07 29.4 59.3 3.0 1 1 0 1 1 1 1 Amino acid permease DUF357 PF04010.13 gi|218884059|ref|YP_002428441.1| - 3.9e-17 62.1 0.4 6.4e-17 61.4 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|218884059|ref|YP_002428441.1| - 1.2e-13 51.5 0.0 2.1e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase-like Methyltransf_29 PF03141.16 gi|218884059|ref|YP_002428441.1| - 0.14 10.7 0.0 0.2 10.2 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase FMN_red PF03358.15 gi|218884060|ref|YP_002428442.1| - 1.5e-27 96.3 0.0 2.1e-27 95.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|218884060|ref|YP_002428442.1| - 2e-12 47.2 0.0 3.3e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold NUDIX PF00293.28 gi|218884061|ref|YP_002428443.1| - 4.3e-23 81.8 0.0 5.7e-23 81.4 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|218884061|ref|YP_002428443.1| - 0.00034 20.6 0.0 0.00051 20.0 0.0 1.3 1 1 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|218884061|ref|YP_002428443.1| - 0.066 12.7 0.0 0.24 10.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4916) Baculo_LEF-10 PF07206.11 gi|218884061|ref|YP_002428443.1| - 0.083 13.1 0.1 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 Baculovirus late expression factor 10 (LEF-10) ECF-ribofla_trS PF07155.12 gi|218884062|ref|YP_002428444.1| - 4.4e-27 95.2 24.1 1.4e-20 74.0 11.3 2.1 1 1 1 2 2 2 2 ECF-type riboflavin transporter, S component PspC PF04024.12 gi|218884062|ref|YP_002428444.1| - 2.1 8.2 0.0 2.1 8.2 0.0 3.9 4 1 0 4 4 4 0 PspC domain ABC_tran PF00005.27 gi|218884063|ref|YP_002428445.1| - 3.8e-41 140.8 0.0 2.2e-19 70.4 0.0 2.8 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|218884063|ref|YP_002428445.1| - 2.9e-22 79.8 9.1 1.3e-07 31.8 0.0 4.1 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218884063|ref|YP_002428445.1| - 4.8e-12 45.8 2.4 0.035 13.6 0.0 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|218884063|ref|YP_002428445.1| - 9.1e-10 38.1 3.5 0.00049 19.8 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|218884063|ref|YP_002428445.1| - 5.6e-09 36.2 0.0 0.046 13.4 0.1 3.5 3 1 1 4 4 3 3 AAA ATPase domain AAA_16 PF13191.6 gi|218884063|ref|YP_002428445.1| - 8.4e-09 36.0 0.5 0.00025 21.5 0.0 2.9 3 1 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 gi|218884063|ref|YP_002428445.1| - 2.5e-08 34.7 5.7 0.0011 19.6 0.4 2.2 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|218884063|ref|YP_002428445.1| - 1.3e-06 28.3 6.8 0.002 17.9 1.4 3.4 3 1 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|218884063|ref|YP_002428445.1| - 3.6e-06 27.3 6.2 0.0016 18.8 0.5 3.4 3 1 0 3 3 3 2 AAA domain NTPase_1 PF03266.15 gi|218884063|ref|YP_002428445.1| - 1.3e-05 25.1 8.0 0.046 13.6 0.8 3.8 4 0 0 4 4 4 2 NTPase RsgA_GTPase PF03193.16 gi|218884063|ref|YP_002428445.1| - 2.1e-05 24.5 0.7 0.095 12.6 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase AAA_18 PF13238.6 gi|218884063|ref|YP_002428445.1| - 2.4e-05 24.9 2.7 0.0021 18.6 0.1 2.8 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|218884063|ref|YP_002428445.1| - 2.6e-05 23.4 0.7 0.0061 15.6 0.2 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.6 gi|218884063|ref|YP_002428445.1| - 2.9e-05 24.3 1.7 0.037 14.2 0.9 3.2 3 0 0 3 3 3 1 AAA domain AAA PF00004.29 gi|218884063|ref|YP_002428445.1| - 9.8e-05 22.8 5.1 0.036 14.5 1.4 3.6 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|218884063|ref|YP_002428445.1| - 0.00022 20.3 1.8 0.069 12.1 0.0 2.3 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB Mg_chelatase PF01078.21 gi|218884063|ref|YP_002428445.1| - 0.00027 20.4 3.7 0.0042 16.5 0.2 2.6 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|218884063|ref|YP_002428445.1| - 0.00029 20.8 6.2 0.032 14.1 0.7 2.9 3 1 0 3 3 2 2 NACHT domain IstB_IS21 PF01695.17 gi|218884063|ref|YP_002428445.1| - 0.00032 20.5 3.5 0.034 13.9 0.1 3.5 4 0 0 4 4 4 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|218884063|ref|YP_002428445.1| - 0.00066 20.0 4.1 0.17 12.1 2.1 3.0 3 0 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|218884063|ref|YP_002428445.1| - 0.00079 19.8 0.3 0.35 11.3 0.2 2.4 2 0 0 2 2 2 1 RNA helicase ATPase_2 PF01637.18 gi|218884063|ref|YP_002428445.1| - 0.00092 19.2 1.4 0.084 12.8 0.0 2.8 3 0 0 3 3 2 1 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|218884063|ref|YP_002428445.1| - 0.00098 19.1 1.9 0.14 12.1 0.1 2.4 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|218884063|ref|YP_002428445.1| - 0.0011 19.0 0.6 0.32 11.0 0.1 3.0 3 0 0 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|218884063|ref|YP_002428445.1| - 0.0015 18.3 1.7 0.047 13.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain PRK PF00485.18 gi|218884063|ref|YP_002428445.1| - 0.0016 18.2 2.7 0.1 12.3 0.4 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.12 gi|218884063|ref|YP_002428445.1| - 0.0018 17.6 2.9 2.2 7.5 0.1 3.4 4 0 0 4 4 4 1 Zeta toxin AAA_5 PF07728.14 gi|218884063|ref|YP_002428445.1| - 0.0019 18.2 5.1 0.23 11.5 0.6 3.4 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|218884063|ref|YP_002428445.1| - 0.0026 17.4 4.0 0.23 11.0 0.1 3.2 3 0 0 3 3 3 1 AAA domain TsaE PF02367.17 gi|218884063|ref|YP_002428445.1| - 0.0079 16.2 3.4 0.39 10.7 0.2 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|218884063|ref|YP_002428445.1| - 0.009 15.2 4.0 0.77 8.9 0.3 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_27 PF13514.6 gi|218884063|ref|YP_002428445.1| - 0.01 15.5 0.4 3.5 7.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|218884063|ref|YP_002428445.1| - 0.016 15.1 6.0 0.043 13.7 0.2 2.6 3 0 0 3 3 2 0 Adenylylsulphate kinase ABC_ATPase PF09818.9 gi|218884063|ref|YP_002428445.1| - 0.027 13.3 3.0 2.5 6.8 0.3 2.6 3 0 0 3 3 3 0 Predicted ATPase of the ABC class SbcCD_C PF13558.6 gi|218884063|ref|YP_002428445.1| - 0.036 14.3 0.1 2.5 8.4 0.0 3.0 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit cobW PF02492.19 gi|218884063|ref|YP_002428445.1| - 0.038 13.6 9.4 0.22 11.1 1.4 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|218884063|ref|YP_002428445.1| - 0.045 13.7 3.3 0.34 10.8 0.2 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PhdYeFM_antitox PF02604.19 gi|218884063|ref|YP_002428445.1| - 0.047 13.5 1.8 2.9 7.8 0.2 2.4 2 0 0 2 2 2 0 Antitoxin Phd_YefM, type II toxin-antitoxin system AAA_19 PF13245.6 gi|218884063|ref|YP_002428445.1| - 0.05 13.9 3.3 0.19 12.1 0.3 2.4 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|218884063|ref|YP_002428445.1| - 0.061 12.8 2.1 0.43 10.0 0.2 2.2 2 0 0 2 2 2 0 PhoH-like protein MMR_HSR1 PF01926.23 gi|218884063|ref|YP_002428445.1| - 0.065 13.3 5.8 2.7 8.1 0.5 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase KAP_NTPase PF07693.14 gi|218884063|ref|YP_002428445.1| - 0.1 11.8 1.4 3 7.0 0.0 2.4 3 0 0 3 3 2 0 KAP family P-loop domain MukB PF04310.12 gi|218884063|ref|YP_002428445.1| - 0.11 12.3 0.5 0.64 9.8 0.1 2.1 2 0 0 2 2 2 0 MukB N-terminal TIP49 PF06068.13 gi|218884063|ref|YP_002428445.1| - 0.13 11.5 0.2 0.34 10.0 0.2 1.7 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_13 PF13166.6 gi|218884063|ref|YP_002428445.1| - 0.13 10.9 2.6 2.8 6.5 0.2 2.4 3 0 0 3 3 2 0 AAA domain AAA_7 PF12775.7 gi|218884063|ref|YP_002428445.1| - 0.14 11.7 1.5 1.1 8.7 0.1 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region PIF1 PF05970.14 gi|218884063|ref|YP_002428445.1| - 0.21 10.7 1.6 1.3 8.1 0.1 2.2 2 0 0 2 2 2 0 PIF1-like helicase Sigma54_activat PF00158.26 gi|218884063|ref|YP_002428445.1| - 0.25 11.0 0.7 2.1 8.0 0.1 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain Cytidylate_kin PF02224.18 gi|218884063|ref|YP_002428445.1| - 0.3 10.8 2.5 0.91 9.2 0.3 2.3 2 0 0 2 2 2 0 Cytidylate kinase dNK PF01712.19 gi|218884063|ref|YP_002428445.1| - 0.32 10.8 3.6 1.9 8.3 0.5 2.2 2 0 0 2 2 2 0 Deoxynucleoside kinase PduV-EutP PF10662.9 gi|218884063|ref|YP_002428445.1| - 0.34 10.6 3.2 0.57 9.9 0.2 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.7 gi|218884063|ref|YP_002428445.1| - 0.66 8.8 2.5 24 3.7 0.1 2.9 3 0 0 3 3 3 0 AAA-like domain Thymidylate_kin PF02223.17 gi|218884063|ref|YP_002428445.1| - 0.69 9.6 1.8 24 4.5 0.1 2.5 2 0 0 2 2 2 0 Thymidylate kinase ATP_bind_1 PF03029.17 gi|218884063|ref|YP_002428445.1| - 1.1 9.0 5.0 2.3 7.9 1.1 2.4 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein ATPase PF06745.13 gi|218884063|ref|YP_002428445.1| - 1.7 8.0 3.2 1.3 8.3 0.2 2.1 2 0 0 2 2 2 0 KaiC AAA_17 PF13207.6 gi|218884063|ref|YP_002428445.1| - 9 6.7 6.4 12 6.4 0.6 2.6 3 0 0 3 3 2 0 AAA domain SPC12 PF06645.13 gi|218884064|ref|YP_002428446.1| - 2.9 8.0 7.5 16 5.7 2.4 2.9 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DEAD PF00270.29 gi|218884065|ref|YP_002428447.1| - 2.8e-26 92.4 0.0 2.2e-25 89.4 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|218884065|ref|YP_002428447.1| - 7.9e-18 64.8 0.0 4.6e-16 59.2 0.0 2.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|218884065|ref|YP_002428447.1| - 7.4e-13 49.1 0.4 1.9e-12 47.8 0.4 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) PmbA_TldD PF01523.16 gi|218884066|ref|YP_002428448.1| - 1.2e-54 186.0 0.1 1.5e-54 185.7 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|218884067|ref|YP_002428449.1| - 4.3e-47 161.3 0.1 5.4e-47 161.0 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase MEIOC PF15189.6 gi|218884067|ref|YP_002428449.1| - 0.038 13.6 0.1 0.064 12.9 0.1 1.3 1 0 0 1 1 1 0 Meiosis-specific coiled-coil domain-containing protein MEIOC BPL_LplA_LipB PF03099.19 gi|218884068|ref|YP_002428450.1| - 1.3e-12 47.7 0.3 2.1e-12 47.1 0.3 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|218884068|ref|YP_002428450.1| - 5.4e-07 29.4 0.1 1.3e-06 28.2 0.1 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain CxxCxxCC PF03692.15 gi|218884069|ref|YP_002428451.1| - 1.5e-07 32.0 0.0 4e-07 30.6 0.0 1.7 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain CTP_transf_like PF01467.26 gi|218884070|ref|YP_002428452.1| - 5e-10 39.7 0.0 3.6e-09 37.0 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|218884070|ref|YP_002428452.1| - 5.6e-05 22.5 0.0 0.0027 17.0 0.1 2.0 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase Na_sulph_symp PF00939.19 gi|218884071|ref|YP_002428453.1| - 9.8e-35 120.5 13.0 1.1e-34 120.3 13.0 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|218884071|ref|YP_002428453.1| - 3.7e-12 46.1 19.2 3.7e-12 46.1 19.2 2.0 1 1 1 2 2 2 2 Citrate transporter DUF373 PF04123.13 gi|218884071|ref|YP_002428453.1| - 0.16 11.4 11.0 0.43 10.0 10.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Na_sulph_symp PF00939.19 gi|218884072|ref|YP_002428454.1| - 2.3e-20 73.1 19.8 2.8e-20 72.8 19.8 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|218884072|ref|YP_002428454.1| - 2.6e-18 66.3 24.0 2.6e-18 66.3 24.0 1.6 1 1 0 1 1 1 1 Citrate transporter OrfB_Zn_ribbon PF07282.11 gi|218884074|ref|YP_002428456.1| - 0.013 15.5 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_IclR PF09339.10 gi|218884075|ref|YP_002428457.1| - 1.2e-07 31.4 0.0 1.5e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|218884075|ref|YP_002428457.1| - 2.1e-05 24.5 0.0 2.5e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|218884075|ref|YP_002428457.1| - 8.8e-05 22.3 0.0 0.00011 21.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|218884075|ref|YP_002428457.1| - 0.00011 22.0 0.0 0.00015 21.5 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|218884075|ref|YP_002428457.1| - 0.00014 21.3 0.0 0.0002 20.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|218884075|ref|YP_002428457.1| - 0.00022 21.5 0.0 0.00027 21.2 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_11 PF08279.12 gi|218884075|ref|YP_002428457.1| - 0.00025 20.9 0.0 0.00031 20.6 0.0 1.1 1 0 0 1 1 1 1 HTH domain DUF2250 PF10007.9 gi|218884075|ref|YP_002428457.1| - 0.00038 20.5 0.1 0.0004 20.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|218884075|ref|YP_002428457.1| - 0.00051 20.3 0.0 0.00063 20.0 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 gi|218884075|ref|YP_002428457.1| - 0.00063 19.3 0.1 0.00071 19.2 0.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Sigma70_r4_2 PF08281.12 gi|218884075|ref|YP_002428457.1| - 0.0007 19.2 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|218884075|ref|YP_002428457.1| - 0.0014 18.5 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|218884075|ref|YP_002428457.1| - 0.0014 18.5 0.1 0.0019 18.1 0.1 1.2 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_Crp_2 PF13545.6 gi|218884075|ref|YP_002428457.1| - 0.002 18.1 0.0 0.0022 18.0 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|218884075|ref|YP_002428457.1| - 0.0083 15.9 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|218884075|ref|YP_002428457.1| - 0.0094 16.1 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|218884075|ref|YP_002428457.1| - 0.0096 15.7 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|218884075|ref|YP_002428457.1| - 0.018 14.8 0.1 0.021 14.6 0.1 1.1 1 0 0 1 1 1 0 LexA DNA binding domain GntR PF00392.21 gi|218884075|ref|YP_002428457.1| - 0.02 14.5 0.1 0.026 14.2 0.1 1.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2336 PF10098.9 gi|218884075|ref|YP_002428457.1| - 0.021 14.3 0.0 0.025 14.1 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2336) HTH_Tnp_ISL3 PF13542.6 gi|218884075|ref|YP_002428457.1| - 0.025 14.0 0.0 0.046 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF2089 PF09862.9 gi|218884075|ref|YP_002428457.1| - 0.026 14.5 0.0 0.04 14.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_AsnC-type PF13404.6 gi|218884075|ref|YP_002428457.1| - 0.034 14.0 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain AbiEi_4 PF13338.6 gi|218884075|ref|YP_002428457.1| - 0.043 14.0 0.0 0.062 13.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HD PF01966.22 gi|218884076|ref|YP_002428458.1| - 1.2e-09 38.5 0.5 2.7e-09 37.3 0.5 1.6 1 0 0 1 1 1 1 HD domain DUF4916 PF16262.5 gi|218884079|ref|YP_002428461.1| - 0.0091 15.5 0.2 0.015 14.8 0.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) ACT PF01842.25 gi|218884080|ref|YP_002428462.1| - 0.035 13.9 0.1 0.094 12.5 0.1 1.7 1 1 0 1 1 1 0 ACT domain TRAPP PF04051.16 gi|218884080|ref|YP_002428462.1| - 0.12 12.1 0.1 1.1 9.0 0.1 2.2 1 1 0 1 1 1 0 Transport protein particle (TRAPP) component DUF2561 PF10812.8 gi|218884082|ref|YP_002428464.1| - 0.033 14.2 0.1 0.033 14.2 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2561) OppC_N PF12911.7 gi|218884082|ref|YP_002428464.1| - 0.19 11.7 4.0 8.5 6.4 0.4 2.4 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C SNN_transmemb PF09049.10 gi|218884082|ref|YP_002428464.1| - 0.37 10.8 4.0 15 5.7 1.4 2.7 2 0 0 2 2 2 0 Stannin transmembrane Phage_holin_3_6 PF07332.11 gi|218884082|ref|YP_002428464.1| - 1.1 9.3 7.5 4.6 7.3 0.7 2.5 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III CRISPR_Cas6 PF10040.9 gi|218884083|ref|YP_002428465.1| - 1.2e-09 38.6 0.1 2.3e-09 37.8 0.1 1.5 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 HD PF01966.22 gi|218884084|ref|YP_002428466.1| - 0.00012 22.3 0.1 0.00023 21.4 0.1 1.5 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|218884084|ref|YP_002428466.1| - 0.00028 21.1 0.0 0.0022 18.2 0.0 2.1 1 1 0 1 1 1 1 HD domain Pdase_M17_N2 PF18295.1 gi|218884084|ref|YP_002428466.1| - 0.0052 17.0 0.1 1.5 9.1 0.0 2.3 1 1 1 2 2 2 2 M17 aminopeptidase N-terminal domain 2 Helicase_C PF00271.31 gi|218884085|ref|YP_002428467.1| - 6.2e-11 42.6 0.0 1.2e-10 41.7 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|218884085|ref|YP_002428467.1| - 3.3e-09 36.7 0.0 1.6e-08 34.6 0.0 2.0 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|218884085|ref|YP_002428467.1| - 3e-08 33.9 0.0 6.3e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|218884085|ref|YP_002428467.1| - 0.0076 15.8 0.0 0.033 13.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain DUF2299 PF10061.9 gi|218884085|ref|YP_002428467.1| - 0.049 13.4 0.0 0.77 9.5 0.0 2.5 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2299) AAA_22 PF13401.6 gi|218884085|ref|YP_002428467.1| - 0.083 13.2 0.0 0.69 10.2 0.0 2.4 1 1 0 1 1 1 0 AAA domain Phage_tail_U PF06141.11 gi|218884086|ref|YP_002428468.1| - 0.11 12.9 1.2 9 6.7 0.1 3.1 3 0 0 3 3 3 0 Phage minor tail protein U Cas_Cas5d PF09704.10 gi|218884087|ref|YP_002428469.1| - 0.0016 18.3 0.1 0.0047 16.8 0.1 1.7 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.16 gi|218884088|ref|YP_002428470.1| - 1.2e-65 221.3 0.0 1.8e-65 220.7 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 LepB_N PF18640.1 gi|218884089|ref|YP_002428471.1| - 0.032 13.9 0.0 0.037 13.6 0.0 1.1 1 0 0 1 1 1 0 LepB N-terminal domain MitMem_reg PF13012.6 gi|218884089|ref|YP_002428471.1| - 0.083 13.3 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Maintenance of mitochondrial structure and function TrmB PF01978.19 gi|218884090|ref|YP_002428472.1| - 7.4e-05 22.5 0.1 0.00016 21.4 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|218884090|ref|YP_002428472.1| - 0.00022 21.2 0.0 0.00054 20.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|218884090|ref|YP_002428472.1| - 0.0039 16.9 0.0 0.007 16.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.17 gi|218884090|ref|YP_002428472.1| - 0.0074 16.1 0.1 0.016 15.0 0.1 1.7 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|218884090|ref|YP_002428472.1| - 0.046 13.6 0.0 0.18 11.7 0.0 2.0 2 0 0 2 2 2 0 MarR family FUR PF01475.19 gi|218884090|ref|YP_002428472.1| - 0.05 13.7 0.0 0.25 11.5 0.0 2.0 2 0 0 2 2 2 0 Ferric uptake regulator family MarR PF01047.22 gi|218884090|ref|YP_002428472.1| - 0.055 13.4 0.2 0.49 10.4 0.1 2.5 2 1 0 2 2 2 0 MarR family Cas_Cas4 PF01930.17 gi|218884091|ref|YP_002428473.1| - 1.3e-11 44.9 0.0 1.5e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|218884091|ref|YP_002428473.1| - 0.033 14.1 0.0 0.062 13.2 0.0 1.5 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.9 gi|218884092|ref|YP_002428474.1| - 5.9e-13 48.8 0.0 6.9e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|218884093|ref|YP_002428475.1| - 4.9e-60 203.1 0.0 6.8e-60 202.6 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Rop-like PF05082.13 gi|218884093|ref|YP_002428475.1| - 0.012 15.4 1.4 0.029 14.2 1.4 1.6 1 0 0 1 1 1 0 Rop-like Tropomyosin PF00261.20 gi|218884093|ref|YP_002428475.1| - 0.14 11.5 4.2 0.28 10.5 2.3 2.0 2 0 0 2 2 2 0 Tropomyosin Csa1 PF06023.12 gi|218884094|ref|YP_002428476.1| - 1.1e-68 231.8 0.0 1.3e-68 231.5 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 Cas_Cas4 PF01930.17 gi|218884094|ref|YP_002428476.1| - 1.2e-05 25.5 0.0 0.012 15.8 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF83 MarR_2 PF12802.7 gi|218884095|ref|YP_002428477.1| - 1.6e-07 31.1 0.1 3.2e-07 30.1 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|218884095|ref|YP_002428477.1| - 3.2e-07 30.1 1.2 6.4e-07 29.2 1.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|218884095|ref|YP_002428477.1| - 8.4e-07 28.5 0.1 1.6e-06 27.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|218884095|ref|YP_002428477.1| - 8.3e-06 25.7 0.2 1.7e-05 24.7 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|218884095|ref|YP_002428477.1| - 3.1e-05 24.0 0.1 7.6e-05 22.7 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|218884095|ref|YP_002428477.1| - 4.9e-05 23.0 0.0 0.00015 21.5 0.0 1.9 2 0 0 2 2 1 1 Homeodomain-like domain HTH_DeoR PF08220.12 gi|218884095|ref|YP_002428477.1| - 8.5e-05 22.2 0.1 0.00021 21.0 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|218884095|ref|YP_002428477.1| - 8.9e-05 22.6 0.2 0.00016 21.8 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HrcA_DNA-bdg PF03444.15 gi|218884095|ref|YP_002428477.1| - 0.00016 21.3 0.2 0.00047 19.8 0.2 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GntR PF00392.21 gi|218884095|ref|YP_002428477.1| - 0.00018 21.1 0.4 0.00051 19.6 0.4 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|218884095|ref|YP_002428477.1| - 0.00021 21.1 0.1 0.0004 20.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|218884095|ref|YP_002428477.1| - 0.00028 20.8 0.1 0.00045 20.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|218884095|ref|YP_002428477.1| - 0.00033 20.6 0.1 0.00089 19.2 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|218884095|ref|YP_002428477.1| - 0.00033 20.5 0.3 0.00061 19.6 0.1 1.6 2 0 0 2 2 1 1 TFIIE alpha subunit PaaX PF07848.12 gi|218884095|ref|YP_002428477.1| - 0.00049 20.3 0.2 0.0019 18.4 0.1 2.0 2 0 0 2 2 2 1 PaaX-like protein DUF3489 PF11994.8 gi|218884095|ref|YP_002428477.1| - 0.00084 19.3 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) GerE PF00196.19 gi|218884095|ref|YP_002428477.1| - 0.00088 18.8 0.3 0.0015 18.0 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_29 PF13551.6 gi|218884095|ref|YP_002428477.1| - 0.00092 19.2 0.0 0.0023 17.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|218884095|ref|YP_002428477.1| - 0.0011 18.5 0.1 0.0026 17.3 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Penicillinase_R PF03965.16 gi|218884095|ref|YP_002428477.1| - 0.0019 18.5 0.5 0.003 17.9 0.5 1.3 1 0 0 1 1 1 1 Penicillinase repressor Rrf2 PF02082.20 gi|218884095|ref|YP_002428477.1| - 0.0026 18.1 0.2 0.0057 17.0 0.2 1.5 1 0 0 1 1 1 1 Transcriptional regulator RPA_C PF08784.11 gi|218884095|ref|YP_002428477.1| - 0.0046 17.6 0.0 0.0086 16.7 0.0 1.4 1 0 0 1 1 1 1 Replication protein A C terminal HTH_28 PF13518.6 gi|218884095|ref|YP_002428477.1| - 0.0052 16.9 0.0 0.01 15.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|218884095|ref|YP_002428477.1| - 0.0057 16.9 0.0 0.01 16.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IF2_N PF04760.15 gi|218884095|ref|YP_002428477.1| - 0.0063 16.3 1.1 0.061 13.2 0.1 2.2 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region HTH_IclR PF09339.10 gi|218884095|ref|YP_002428477.1| - 0.0064 16.3 0.1 0.013 15.3 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|218884095|ref|YP_002428477.1| - 0.0069 15.8 0.0 0.017 14.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 SMC_ScpB PF04079.16 gi|218884095|ref|YP_002428477.1| - 0.007 16.0 0.1 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_Tnp_Tc3_2 PF01498.18 gi|218884095|ref|YP_002428477.1| - 0.0082 16.4 0.1 0.013 15.7 0.1 1.3 1 0 0 1 1 1 1 Transposase DUF977 PF06163.11 gi|218884095|ref|YP_002428477.1| - 0.009 16.0 0.1 0.015 15.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_AsnC-type PF13404.6 gi|218884095|ref|YP_002428477.1| - 0.01 15.6 0.0 0.051 13.4 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|218884095|ref|YP_002428477.1| - 0.012 15.3 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_8 PF02954.19 gi|218884095|ref|YP_002428477.1| - 0.019 14.8 0.1 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_Mga PF08280.11 gi|218884095|ref|YP_002428477.1| - 0.02 14.9 0.1 0.036 14.1 0.1 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_35 PF13693.6 gi|218884095|ref|YP_002428477.1| - 0.027 14.5 0.1 0.054 13.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 gi|218884095|ref|YP_002428477.1| - 0.037 13.7 0.1 0.057 13.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_17 PF12728.7 gi|218884095|ref|YP_002428477.1| - 0.047 13.9 0.3 0.2 11.8 0.3 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|218884095|ref|YP_002428477.1| - 0.059 13.1 0.0 0.28 11.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|218884095|ref|YP_002428477.1| - 0.06 13.5 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_36 PF13730.6 gi|218884095|ref|YP_002428477.1| - 0.06 13.3 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_13 PF11972.8 gi|218884095|ref|YP_002428477.1| - 0.063 13.3 0.2 0.13 12.3 0.2 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Mga PF05043.13 gi|218884095|ref|YP_002428477.1| - 0.1 13.2 0.1 0.28 11.8 0.0 1.7 2 0 0 2 2 1 0 Mga helix-turn-helix domain Sulfolobus_pRN PF05584.11 gi|218884095|ref|YP_002428477.1| - 0.11 12.6 0.2 0.22 11.6 0.2 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein RRF_GI PF12614.8 gi|218884095|ref|YP_002428477.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Ribosome recycling factor DUF3692 PF12469.8 gi|218884098|ref|YP_002428480.1| - 5.5e-29 100.6 0.0 1.7e-28 99.0 0.0 1.9 1 0 0 1 1 1 1 CRISPR-associated protein Colicin PF01024.19 gi|218884098|ref|YP_002428480.1| - 0.036 13.9 0.0 0.13 12.1 0.0 1.9 2 0 0 2 2 2 0 Colicin pore forming domain mCpol PF18182.1 gi|218884098|ref|YP_002428480.1| - 0.084 13.2 0.1 0.41 11.0 0.0 2.3 2 0 0 2 2 2 0 minimal CRISPR polymerase domain Dynamin_M PF01031.20 gi|218884098|ref|YP_002428480.1| - 0.13 11.5 0.0 0.3 10.3 0.0 1.5 1 0 0 1 1 1 0 Dynamin central region Mak16 PF04874.14 gi|218884098|ref|YP_002428480.1| - 0.26 11.9 1.8 35 5.1 0.0 3.3 3 0 0 3 3 3 0 Mak16 protein C-terminal region RAMPs PF03787.15 gi|218884099|ref|YP_002428481.1| - 2e-10 41.1 0.2 1.1e-09 38.6 0.2 1.9 1 1 0 1 1 1 1 RAMP superfamily Pal1 PF08316.11 gi|218884099|ref|YP_002428481.1| - 0.21 12.3 0.1 1.2 9.9 0.0 2.0 2 0 0 2 2 2 0 Pal1 cell morphology protein RAMPs PF03787.15 gi|218884100|ref|YP_002428482.1| - 3.4e-05 24.0 0.4 8.8e-05 22.6 0.2 1.7 2 0 0 2 2 2 1 RAMP superfamily Cas_Cmr5 PF09701.10 gi|218884101|ref|YP_002428483.1| - 0.0041 17.4 0.2 0.035 14.4 0.2 2.2 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) DUF3368 PF11848.8 gi|218884101|ref|YP_002428483.1| - 0.099 12.4 0.9 0.28 11.0 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF3368) RAMPs PF03787.15 gi|218884102|ref|YP_002428484.1| - 1.2e-21 77.8 0.0 2.8e-21 76.5 0.0 1.7 1 1 0 1 1 1 1 RAMP superfamily Cas_DxTHG PF09455.10 gi|218884103|ref|YP_002428485.1| - 3.1e-11 43.5 0.0 1.4e-10 41.3 0.0 1.9 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Cas_APE2256 PF09651.10 gi|218884105|ref|YP_002428487.1| - 2.2e-29 102.1 0.0 3e-29 101.6 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) BHD_2 PF10404.9 gi|218884106|ref|YP_002428488.1| - 0.027 15.4 0.3 0.03 15.3 0.3 1.1 1 0 0 1 1 1 0 Rad4 beta-hairpin domain 2 DUF1652 PF07865.11 gi|218884109|ref|YP_002428491.1| - 0.0034 17.2 0.1 0.0048 16.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1652) Chordopox_A20R PF05941.13 gi|218884109|ref|YP_002428491.1| - 0.057 12.4 0.2 0.061 12.3 0.2 1.0 1 0 0 1 1 1 0 Chordopoxvirus A20R protein TRAM PF01938.20 gi|218884110|ref|YP_002428492.1| - 8.5e-06 25.7 0.5 1.2e-05 25.2 0.5 1.2 1 0 0 1 1 1 1 TRAM domain CSD2 PF17876.1 gi|218884110|ref|YP_002428492.1| - 0.00051 20.2 0.3 0.0084 16.3 0.1 2.0 1 1 1 2 2 2 1 Cold shock domain DUF4948 PF16306.5 gi|218884110|ref|YP_002428492.1| - 0.025 14.4 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4948) Adenosine_kin PF04008.14 gi|218884112|ref|YP_002428494.1| - 4.6e-75 250.6 0.1 5.3e-75 250.4 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase PNP_UDP_1 PF01048.20 gi|218884114|ref|YP_002428496.1| - 9.1e-43 146.2 0.9 1.1e-42 145.9 0.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily tRNA-synt_1e PF01406.19 gi|218884115|ref|YP_002428497.1| - 3.4e-121 404.2 0.0 4.3e-121 403.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|218884115|ref|YP_002428497.1| - 2.1e-11 43.2 2.0 1.3e-08 34.0 0.9 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|218884115|ref|YP_002428497.1| - 2.3e-08 34.4 0.0 5.6e-08 33.2 0.0 1.7 1 0 0 1 1 1 1 DALR domain tRNA-synt_1 PF00133.22 gi|218884115|ref|YP_002428497.1| - 9.4e-07 27.5 0.3 3.4e-05 22.3 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|218884115|ref|YP_002428497.1| - 0.058 12.3 0.4 0.17 10.7 0.2 1.9 2 1 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain UPF0102 PF02021.17 gi|218884116|ref|YP_002428498.1| - 0.00053 20.2 0.2 0.0012 19.0 0.2 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 MlaD PF02470.20 gi|218884116|ref|YP_002428498.1| - 0.0025 18.1 0.2 0.0029 17.8 0.2 1.5 1 1 0 1 1 1 1 MlaD protein Radical_SAM PF04055.21 gi|218884117|ref|YP_002428499.1| - 1.3e-07 32.1 4.0 9.9e-06 26.0 1.4 3.5 1 1 2 3 3 3 1 Radical SAM superfamily DUF1848 PF08902.11 gi|218884117|ref|YP_002428499.1| - 0.031 14.0 0.6 3 7.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) Clathrin PF00637.20 gi|218884118|ref|YP_002428500.1| - 0.042 13.7 0.1 0.14 12.1 0.1 2.0 1 1 0 1 1 1 0 Region in Clathrin and VPS LisH_TPL PF17814.1 gi|218884118|ref|YP_002428500.1| - 0.077 12.7 1.2 0.14 11.9 0.1 2.1 2 0 0 2 2 2 0 LisH-like dimerisation domain TPR_20 PF14561.6 gi|218884118|ref|YP_002428500.1| - 0.082 13.3 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF5117 PF17148.4 gi|218884118|ref|YP_002428500.1| - 0.089 12.6 0.6 0.64 9.9 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5117) Amidase02_C PF12123.8 gi|218884118|ref|YP_002428500.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 N-acetylmuramoyl-l-alanine amidase HAD PF12710.7 gi|218884119|ref|YP_002428501.1| - 5e-14 53.1 0.0 6.1e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|218884119|ref|YP_002428501.1| - 3e-11 44.0 0.0 5e-09 36.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|218884119|ref|YP_002428501.1| - 1.7e-09 38.0 0.0 1.4e-08 35.0 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|218884119|ref|YP_002428501.1| - 2.2e-06 27.6 0.0 7.1e-05 22.7 0.0 2.5 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Parvo_NS1 PF01057.17 gi|218884119|ref|YP_002428501.1| - 0.045 12.8 0.1 0.062 12.4 0.1 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Hydrolase_6 PF13344.6 gi|218884119|ref|YP_002428501.1| - 0.08 13.1 0.1 0.89 9.7 0.1 2.3 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Zn-ribbon_8 PF09723.10 gi|218884120|ref|YP_002428502.1| - 0.00088 19.3 0.8 0.0016 18.5 0.8 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|218884120|ref|YP_002428502.1| - 0.014 15.4 0.7 0.018 15.0 0.7 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_5 PF01022.20 gi|218884120|ref|YP_002428502.1| - 0.015 15.2 0.1 0.032 14.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TFIIE_beta PF02186.15 gi|218884120|ref|YP_002428502.1| - 0.068 13.5 0.1 0.095 13.0 0.1 1.2 1 0 0 1 1 1 0 TFIIE beta subunit core domain zf-C2HC5 PF06221.13 gi|218884120|ref|YP_002428502.1| - 0.083 12.9 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type OrfB_Zn_ribbon PF07282.11 gi|218884120|ref|YP_002428502.1| - 0.11 12.5 1.6 0.18 11.7 1.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF4777 PF16007.5 gi|218884120|ref|YP_002428502.1| - 0.13 12.5 0.1 0.26 11.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) UPF0547 PF10571.9 gi|218884120|ref|YP_002428502.1| - 0.2 11.8 6.2 0.26 11.4 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1451 PF07295.11 gi|218884120|ref|YP_002428502.1| - 0.23 11.5 0.5 0.43 10.6 0.5 1.4 1 1 0 1 1 1 0 Zinc-ribbon containing domain zinc_ribbon_4 PF13717.6 gi|218884120|ref|YP_002428502.1| - 0.3 11.0 4.9 3.8 7.5 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|218884120|ref|YP_002428502.1| - 0.57 10.0 4.5 3.6 7.4 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain PhnA_Zn_Ribbon PF08274.12 gi|218884120|ref|YP_002428502.1| - 1.1 9.2 3.8 0.97 9.4 0.4 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF167 PF02594.16 gi|218884121|ref|YP_002428503.1| - 2.2e-15 56.5 0.0 3e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 KH_7 PF17214.3 gi|218884121|ref|YP_002428503.1| - 0.036 14.0 0.4 0.19 11.7 0.1 2.1 2 0 0 2 2 2 0 KH domain TRM PF02005.16 gi|218884122|ref|YP_002428504.1| - 1.4e-72 244.9 0.0 1.7e-72 244.7 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|218884122|ref|YP_002428504.1| - 0.0013 18.5 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Ubiquitin_3 PF14836.6 gi|218884122|ref|YP_002428504.1| - 0.041 13.9 0.0 0.085 12.8 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin-like domain Cons_hypoth95 PF03602.15 gi|218884122|ref|YP_002428504.1| - 0.18 11.4 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 NTPase_1 PF03266.15 gi|218884123|ref|YP_002428505.1| - 3e-49 167.2 0.2 3.8e-49 166.8 0.2 1.1 1 0 0 1 1 1 1 NTPase MeaB PF03308.16 gi|218884123|ref|YP_002428505.1| - 8.3e-05 21.7 0.1 0.00025 20.1 0.1 1.8 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|218884123|ref|YP_002428505.1| - 0.00022 21.7 0.0 0.00029 21.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|218884123|ref|YP_002428505.1| - 0.00039 20.3 0.0 0.00074 19.4 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 gi|218884123|ref|YP_002428505.1| - 0.00039 20.8 0.0 0.00064 20.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|218884123|ref|YP_002428505.1| - 0.00062 19.8 0.1 0.0014 18.6 0.0 1.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase NACHT PF05729.12 gi|218884123|ref|YP_002428505.1| - 0.0017 18.3 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 gi|218884123|ref|YP_002428505.1| - 0.0023 18.2 0.1 0.0071 16.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|218884123|ref|YP_002428505.1| - 0.0061 16.9 0.0 0.01 16.2 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_5 PF07728.14 gi|218884123|ref|YP_002428505.1| - 0.0086 16.1 0.3 0.47 10.5 0.0 2.6 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) KTI12 PF08433.10 gi|218884123|ref|YP_002428505.1| - 0.013 14.9 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF2478 PF10649.9 gi|218884123|ref|YP_002428505.1| - 0.018 14.6 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2478) AAA_24 PF13479.6 gi|218884123|ref|YP_002428505.1| - 0.024 14.3 0.1 0.036 13.8 0.0 1.6 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|218884123|ref|YP_002428505.1| - 0.033 14.6 0.0 0.057 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain KAP_NTPase PF07693.14 gi|218884123|ref|YP_002428505.1| - 0.034 13.4 0.0 0.034 13.4 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_33 PF13671.6 gi|218884123|ref|YP_002428505.1| - 0.052 13.7 0.0 0.082 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|218884123|ref|YP_002428505.1| - 0.083 12.6 0.0 0.21 11.3 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|218884123|ref|YP_002428505.1| - 0.086 12.7 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|218884123|ref|YP_002428505.1| - 0.099 12.7 0.0 0.35 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain DpaA_N PF16924.5 gi|218884123|ref|YP_002428505.1| - 0.13 12.4 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain TrwB_AAD_bind PF10412.9 gi|218884123|ref|YP_002428505.1| - 0.14 11.0 0.0 0.26 10.2 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Roc PF08477.13 gi|218884123|ref|YP_002428505.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_30 PF13604.6 gi|218884123|ref|YP_002428505.1| - 0.17 11.6 0.0 0.42 10.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|218884123|ref|YP_002428505.1| - 0.21 11.1 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region HTH_3 PF01381.22 gi|218884124|ref|YP_002428506.1| - 1.6e-10 40.9 0.3 4.3e-10 39.5 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|218884124|ref|YP_002428506.1| - 5.7e-06 26.6 0.0 1.4e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|218884124|ref|YP_002428506.1| - 0.0016 18.4 0.1 0.12 12.4 0.0 3.5 4 0 0 4 4 4 1 Crp-like helix-turn-helix domain UPF0180 PF03698.13 gi|218884124|ref|YP_002428506.1| - 0.0045 17.1 0.0 0.042 14.0 0.0 2.5 2 1 1 3 3 3 1 Uncharacterised protein family (UPF0180) HTH_19 PF12844.7 gi|218884124|ref|YP_002428506.1| - 0.0049 16.9 0.0 0.018 15.1 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|218884124|ref|YP_002428506.1| - 0.0063 16.4 0.0 0.036 14.0 0.0 2.4 3 0 0 3 3 3 1 HTH domain MerR PF00376.23 gi|218884124|ref|YP_002428506.1| - 0.0078 16.0 0.4 0.026 14.3 0.1 2.0 2 0 0 2 2 2 1 MerR family regulatory protein CarbopepD_reg_2 PF13715.6 gi|218884124|ref|YP_002428506.1| - 0.03 14.3 0.1 1.7 8.7 0.1 3.0 2 1 0 2 2 2 0 CarboxypepD_reg-like domain HTH_17 PF12728.7 gi|218884124|ref|YP_002428506.1| - 0.041 14.1 0.1 0.13 12.5 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|218884124|ref|YP_002428506.1| - 0.055 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|218884124|ref|YP_002428506.1| - 0.074 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF3933 PF13069.6 gi|218884124|ref|YP_002428506.1| - 0.085 12.7 0.4 0.33 10.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3933) HTH_26 PF13443.6 gi|218884124|ref|YP_002428506.1| - 0.13 12.7 0.0 0.31 11.5 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MetallophosN PF16371.5 gi|218884124|ref|YP_002428506.1| - 0.14 12.4 0.0 0.3 11.4 0.0 1.6 1 0 0 1 1 1 0 N terminal of Calcineurin-like phosphoesterase Fibrillarin PF01269.17 gi|218884125|ref|YP_002428507.1| - 8.6e-103 342.3 0.0 9.8e-103 342.1 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|218884125|ref|YP_002428507.1| - 0.0014 18.4 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|218884125|ref|YP_002428507.1| - 0.0055 16.4 0.0 0.011 15.4 0.0 1.5 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Nop PF01798.18 gi|218884126|ref|YP_002428508.1| - 3.5e-71 239.3 0.0 7e-71 238.4 0.0 1.5 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin FAST_1 PF06743.15 gi|218884126|ref|YP_002428508.1| - 0.045 13.7 0.0 5.5 7.0 0.0 2.5 2 0 0 2 2 2 0 FAST kinase-like protein, subdomain 1 Ribosomal_S30 PF04758.14 gi|218884127|ref|YP_002428509.1| - 7e-14 51.8 0.6 8.5e-14 51.5 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S30 Epimerase PF01370.21 gi|218884128|ref|YP_002428510.1| - 6.9e-31 107.5 0.0 8.3e-31 107.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|218884128|ref|YP_002428510.1| - 3.5e-23 82.5 0.1 1.4e-22 80.6 0.1 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|218884128|ref|YP_002428510.1| - 3.1e-15 56.0 0.0 4.7e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|218884128|ref|YP_002428510.1| - 1.3e-09 37.7 0.1 1.6e-08 34.0 0.1 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|218884128|ref|YP_002428510.1| - 2.8e-09 36.4 0.0 3.8e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|218884128|ref|YP_002428510.1| - 5.7e-09 36.1 0.0 1.2e-08 35.0 0.0 1.6 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|218884128|ref|YP_002428510.1| - 8.2e-07 28.5 0.0 2.6e-05 23.5 0.0 2.4 1 1 0 2 2 2 1 Male sterility protein NmrA PF05368.13 gi|218884128|ref|YP_002428510.1| - 0.00046 19.8 0.0 0.0011 18.5 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|218884128|ref|YP_002428510.1| - 0.035 14.0 0.0 0.11 12.5 0.0 1.7 1 1 0 1 1 1 0 KR domain DapB_N PF01113.20 gi|218884128|ref|YP_002428510.1| - 0.044 13.9 0.0 0.078 13.1 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Aminotran_1_2 PF00155.21 gi|218884129|ref|YP_002428511.1| - 3.9e-66 223.7 0.0 4.7e-66 223.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|218884129|ref|YP_002428511.1| - 8.7e-08 31.1 0.0 1.2e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|218884129|ref|YP_002428511.1| - 0.00077 18.5 0.0 0.0013 17.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|218884129|ref|YP_002428511.1| - 0.005 15.6 0.0 0.17 10.6 0.0 2.7 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Radical_SAM PF04055.21 gi|218884129|ref|YP_002428511.1| - 0.064 13.6 0.5 1.8 8.9 0.5 2.5 1 1 0 1 1 1 0 Radical SAM superfamily Beta_elim_lyase PF01212.21 gi|218884129|ref|YP_002428511.1| - 0.11 11.8 0.0 0.24 10.6 0.0 1.5 1 0 0 1 1 1 0 Beta-eliminating lyase Asparaginase PF00710.20 gi|218884130|ref|YP_002428512.1| - 1.7e-56 190.8 0.0 3.6e-56 189.7 0.0 1.5 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|218884130|ref|YP_002428512.1| - 5.5e-34 116.8 0.0 6.5e-33 113.3 0.0 2.2 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|218884130|ref|YP_002428512.1| - 2.3e-17 62.0 0.5 4.8e-17 61.0 0.5 1.6 1 0 0 1 1 1 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|218884130|ref|YP_002428512.1| - 0.079 12.5 0.0 1.6 8.2 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding protein domain GatB_N PF02934.15 gi|218884131|ref|YP_002428513.1| - 1.1e-72 244.7 0.0 1.5e-72 244.3 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|218884131|ref|YP_002428513.1| - 6.4e-22 78.0 1.9 6.4e-22 78.0 1.9 2.0 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|218884131|ref|YP_002428513.1| - 2.5e-18 66.1 0.1 8.5e-18 64.4 0.0 2.0 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|218884131|ref|YP_002428513.1| - 0.00028 21.0 1.4 0.00028 21.0 1.4 1.9 2 0 0 2 2 2 1 Yqey-like protein HTH_24 PF13412.6 gi|218884131|ref|YP_002428513.1| - 0.088 12.4 0.0 5.4 6.7 0.0 2.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding ATP-cone PF03477.16 gi|218884131|ref|YP_002428513.1| - 0.37 11.4 4.7 0.97 10.1 0.1 3.4 2 1 1 3 3 3 0 ATP cone domain Tudor_FRX1 PF18336.1 gi|218884132|ref|YP_002428514.1| - 0.039 13.9 1.3 0.2 11.6 0.0 2.6 2 1 1 3 3 3 0 Fragile X mental retardation Tudor domain HTH_IclR PF09339.10 gi|218884133|ref|YP_002428515.1| - 0.011 15.6 0.1 0.058 13.2 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|218884133|ref|YP_002428515.1| - 0.12 11.9 0.2 0.28 10.8 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding eIF-5a PF01287.20 gi|218884134|ref|YP_002428516.1| - 1.1e-05 25.4 0.6 1.7e-05 24.8 0.6 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP PF01132.20 gi|218884134|ref|YP_002428516.1| - 1.6e-05 24.8 0.7 2.8e-05 24.1 0.7 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain EFP_N PF08207.12 gi|218884134|ref|YP_002428516.1| - 3.6e-05 23.7 0.2 0.00025 21.0 0.0 2.1 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain CN_hydrolase PF00795.22 gi|218884136|ref|YP_002428518.1| - 8.2e-07 28.6 0.0 1.1e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Topoisom_bac PF01131.20 gi|218884137|ref|YP_002428519.1| - 1e-79 268.5 0.3 1.7e-79 267.7 0.3 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|218884137|ref|YP_002428519.1| - 1.3e-24 86.4 0.1 7.2e-24 84.0 0.1 2.4 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|218884137|ref|YP_002428519.1| - 6.2e-15 55.4 0.0 2.3e-14 53.6 0.0 2.0 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|218884137|ref|YP_002428519.1| - 2.6e-09 37.4 0.0 0.051 13.9 0.0 4.8 4 0 0 4 4 4 2 Helicase conserved C-terminal domain zf_Rg PF17915.1 gi|218884137|ref|YP_002428519.1| - 6.7e-09 35.0 0.3 2.2e-08 33.4 0.3 1.9 1 0 0 1 1 1 1 Reverse gyrase zinc finger ResIII PF04851.15 gi|218884137|ref|YP_002428519.1| - 2.3e-07 31.0 0.0 7.1e-07 29.4 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit zf-dskA_traR PF01258.17 gi|218884137|ref|YP_002428519.1| - 0.029 14.3 0.8 0.094 12.7 0.8 1.9 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger DUF1890 PF09001.11 gi|218884137|ref|YP_002428519.1| - 0.15 12.5 0.1 0.86 10.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1890) Flu_NS2 PF00601.19 gi|218884137|ref|YP_002428519.1| - 0.2 12.0 2.4 0.56 10.5 0.1 2.9 2 0 0 2 2 2 0 Influenza non-structural protein (NS2) Zn-ribbon_8 PF09723.10 gi|218884137|ref|YP_002428519.1| - 0.75 10.0 5.6 7.8 6.7 0.6 2.5 2 0 0 2 2 2 0 Zinc ribbon domain SSF PF00474.17 gi|218884138|ref|YP_002428520.1| - 1.3e-19 70.4 35.4 1.3e-19 70.4 35.4 2.2 2 1 1 3 3 3 1 Sodium:solute symporter family MarR_2 PF12802.7 gi|218884140|ref|YP_002428522.1| - 2.6e-07 30.4 0.2 5.1e-07 29.5 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|218884140|ref|YP_002428522.1| - 2.4e-05 23.8 0.6 0.00052 19.5 0.5 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|218884140|ref|YP_002428522.1| - 6.8e-05 22.7 0.2 0.00017 21.4 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|218884140|ref|YP_002428522.1| - 0.00033 21.1 0.1 0.00082 19.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|218884140|ref|YP_002428522.1| - 0.0011 18.7 0.2 0.0031 17.3 0.2 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|218884140|ref|YP_002428522.1| - 0.002 18.1 1.2 0.0031 17.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|218884140|ref|YP_002428522.1| - 0.002 18.1 0.3 0.0059 16.6 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_CodY PF08222.11 gi|218884140|ref|YP_002428522.1| - 0.0021 17.6 0.3 0.0049 16.4 0.3 1.6 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_5 PF01022.20 gi|218884140|ref|YP_002428522.1| - 0.004 17.0 1.4 0.046 13.6 0.5 2.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|218884140|ref|YP_002428522.1| - 0.0074 16.2 0.3 0.016 15.2 0.3 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TBPIP PF07106.13 gi|218884140|ref|YP_002428522.1| - 0.0092 15.9 0.1 0.03 14.3 0.1 1.9 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain DprA_WH PF17782.1 gi|218884140|ref|YP_002428522.1| - 0.01 15.9 0.1 0.025 14.7 0.1 1.6 1 0 0 1 1 1 0 DprA winged helix domain Fe_dep_repress PF01325.19 gi|218884140|ref|YP_002428522.1| - 0.017 15.3 0.3 0.11 12.7 0.1 2.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.9 gi|218884140|ref|YP_002428522.1| - 0.02 15.0 0.3 0.042 14.0 0.3 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Cdc6_C PF09079.11 gi|218884140|ref|YP_002428522.1| - 0.022 14.7 0.1 0.062 13.3 0.1 1.7 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_IclR PF09339.10 gi|218884140|ref|YP_002428522.1| - 0.027 14.3 0.1 0.059 13.2 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Mnd1 PF03962.15 gi|218884140|ref|YP_002428522.1| - 0.03 14.6 0.1 0.34 11.2 0.0 2.7 2 1 1 3 3 3 0 Mnd1 HTH domain B-block_TFIIIC PF04182.12 gi|218884140|ref|YP_002428522.1| - 0.051 13.7 0.4 0.11 12.7 0.4 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_46 PF15977.5 gi|218884140|ref|YP_002428522.1| - 0.059 13.4 1.1 0.18 11.8 1.1 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding PAX PF00292.18 gi|218884140|ref|YP_002428522.1| - 0.061 13.2 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 'Paired box' domain Lipoprotein_9 PF03180.14 gi|218884140|ref|YP_002428522.1| - 0.091 11.9 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 NLPA lipoprotein LysR_substrate PF03466.20 gi|218884140|ref|YP_002428522.1| - 0.26 10.6 0.0 0.4 10.0 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain UPRTase PF14681.6 gi|218884141|ref|YP_002428523.1| - 2.3e-40 138.3 0.2 2.6e-40 138.1 0.2 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|218884141|ref|YP_002428523.1| - 4.3e-06 26.3 0.3 1.3e-05 24.7 0.3 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|218884141|ref|YP_002428523.1| - 0.0005 19.6 0.0 0.00064 19.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase NTP_transferase PF00483.23 gi|218884142|ref|YP_002428524.1| - 1.9e-27 96.4 0.0 2.3e-27 96.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|218884142|ref|YP_002428524.1| - 4.9e-11 43.2 0.0 5.6e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain MatE PF01554.18 gi|218884143|ref|YP_002428525.1| - 4.4e-44 150.0 35.3 2.3e-28 98.9 8.2 2.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|218884143|ref|YP_002428525.1| - 1.7e-09 37.9 22.2 1.9e-08 34.5 8.9 4.7 1 1 3 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Glyco_tran_28_C PF04101.16 gi|218884144|ref|YP_002428526.1| - 5.9e-06 26.4 0.0 9.1e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_4 PF13439.6 gi|218884144|ref|YP_002428526.1| - 0.0011 18.9 0.3 0.09 12.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|218884144|ref|YP_002428526.1| - 0.028 14.9 0.0 0.22 12.0 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_transf_28 PF03033.20 gi|218884144|ref|YP_002428526.1| - 0.062 13.3 0.0 0.13 12.3 0.0 1.5 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Alg14 PF08660.11 gi|218884144|ref|YP_002428526.1| - 0.063 13.2 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 Oligosaccharide biosynthesis protein Alg14 like YjeF_N PF03853.15 gi|218884144|ref|YP_002428526.1| - 0.23 11.3 0.0 0.69 9.8 0.0 1.7 2 0 0 2 2 2 0 YjeF-related protein N-terminus Cation_efflux PF01545.21 gi|218884145|ref|YP_002428527.1| - 2.6e-17 63.2 23.6 3.1e-17 63.0 23.6 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|218884145|ref|YP_002428527.1| - 8.7e-10 38.6 0.4 1.5e-09 37.8 0.4 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF4233 PF14017.6 gi|218884145|ref|YP_002428527.1| - 9.7 6.6 9.5 1.1 9.6 0.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4233) IL34 PF15036.6 gi|218884146|ref|YP_002428528.1| - 0.009 16.1 0.0 0.022 14.8 0.0 1.6 1 1 1 2 2 2 1 Interleukin 34 PfkB PF00294.24 gi|218884148|ref|YP_002428530.1| - 6.3e-39 134.1 0.0 8.6e-39 133.6 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PNP_UDP_1 PF01048.20 gi|218884149|ref|YP_002428531.1| - 1.1e-36 126.3 0.3 1.3e-36 126.0 0.3 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Metallophos_2 PF12850.7 gi|218884150|ref|YP_002428532.1| - 1.9e-30 106.3 0.1 2.3e-30 106.0 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|218884150|ref|YP_002428532.1| - 2.2e-09 38.1 2.6 5.3e-08 33.6 2.6 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|218884150|ref|YP_002428532.1| - 3e-05 23.5 0.1 0.0099 15.2 0.0 2.2 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily ArsA_HSP20 PF17886.1 gi|218884151|ref|YP_002428533.1| - 1.6e-12 46.8 0.1 3.7e-12 45.6 0.1 1.6 1 1 1 2 2 2 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|218884151|ref|YP_002428533.1| - 1.5e-09 37.9 1.3 8e-08 32.4 1.3 2.4 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.16 gi|218884151|ref|YP_002428533.1| - 6e-05 24.0 0.4 0.00013 22.9 0.4 1.5 2 0 0 2 2 2 1 CS domain GvpH PF05455.11 gi|218884151|ref|YP_002428533.1| - 0.0001 22.4 0.0 0.00014 22.0 0.0 1.3 1 0 0 1 1 1 1 GvpH DPCD PF14913.6 gi|218884151|ref|YP_002428533.1| - 0.048 13.0 0.1 0.081 12.3 0.1 1.4 1 0 0 1 1 1 0 DPCD protein family PIH1_CS PF18201.1 gi|218884151|ref|YP_002428533.1| - 0.081 13.3 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 PIH1 CS-like domain Myosin_N PF02736.19 gi|218884151|ref|YP_002428533.1| - 0.11 12.3 2.1 0.72 9.7 0.5 2.5 1 1 1 2 2 2 0 Myosin N-terminal SH3-like domain UPF0047 PF01894.17 gi|218884152|ref|YP_002428534.1| - 6e-33 113.4 0.1 7.7e-33 113.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 QRPTase_C PF01729.19 gi|218884153|ref|YP_002428535.1| - 6.5e-27 94.4 0.0 2.8e-25 89.0 0.0 2.1 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|218884153|ref|YP_002428535.1| - 4.5e-06 26.6 0.0 8.3e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_C PF17956.1 gi|218884153|ref|YP_002428535.1| - 5.7e-05 23.5 0.0 0.00012 22.5 0.0 1.5 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain NAPRTase_N PF17767.1 gi|218884153|ref|YP_002428535.1| - 0.00026 21.4 0.0 0.33 11.3 0.0 2.3 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DUF910 PF06014.11 gi|218884154|ref|YP_002428536.1| - 0.0032 17.5 0.2 0.008 16.2 0.2 1.7 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF910) Metallophos_2 PF12850.7 gi|218884156|ref|YP_002428538.1| - 0.037 14.2 0.0 0.074 13.2 0.0 1.7 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|218884156|ref|YP_002428538.1| - 0.22 10.8 0.0 16 4.7 0.0 2.2 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Succ_CoA_lig PF13607.6 gi|218884157|ref|YP_002428539.1| - 1.1e-53 180.7 0.1 2.3e-53 179.7 0.1 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|218884157|ref|YP_002428539.1| - 3.5e-25 88.8 0.2 1.6e-24 86.6 0.1 2.2 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|218884157|ref|YP_002428539.1| - 8.3e-19 68.1 0.3 3.1e-18 66.2 0.2 2.1 2 0 0 2 2 2 1 CoA binding domain UPF0175 PF03683.13 gi|218884157|ref|YP_002428539.1| - 0.0029 17.3 0.0 0.016 14.9 0.0 2.2 3 0 0 3 3 3 1 Uncharacterised protein family (UPF0175) F420_oxidored PF03807.17 gi|218884157|ref|YP_002428539.1| - 0.22 12.1 1.1 2.8 8.6 0.4 2.8 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent tRNA_bind PF01588.20 gi|218884158|ref|YP_002428540.1| - 3.7e-26 91.1 0.0 4.2e-26 90.9 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain TYW3 PF02676.14 gi|218884159|ref|YP_002428541.1| - 4.8e-27 94.7 0.0 9.8e-27 93.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase TYW3 Sigma70_r1_1 PF03979.14 gi|218884159|ref|YP_002428541.1| - 0.028 14.5 0.0 0.053 13.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 SpoU_sub_bind PF08032.12 gi|218884159|ref|YP_002428541.1| - 0.15 12.4 0.1 0.32 11.3 0.1 1.6 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding SDF PF00375.18 gi|218884160|ref|YP_002428542.1| - 3.8e-59 200.7 28.2 4.2e-59 200.5 28.2 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Dynamitin PF04912.14 gi|218884162|ref|YP_002428544.1| - 0.066 12.5 0.0 0.095 12.0 0.0 1.2 1 0 0 1 1 1 0 Dynamitin Resolvase PF00239.21 gi|218884163|ref|YP_002428545.1| - 0.00031 20.9 0.0 0.00033 20.8 0.0 1.0 1 0 0 1 1 1 1 Resolvase, N terminal domain tRNA_deacylase PF04414.12 gi|218884164|ref|YP_002428546.1| - 7.5e-62 208.5 0.0 9.6e-62 208.1 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase NTPase_I-T PF01931.18 gi|218884166|ref|YP_002428548.1| - 0.00061 19.6 0.0 0.00066 19.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 2-Hacid_dh_C PF02826.19 gi|218884168|ref|YP_002428550.1| - 8.3e-72 240.3 0.0 2e-71 239.0 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|218884168|ref|YP_002428550.1| - 1e-36 125.5 0.1 1.2e-36 125.4 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|218884168|ref|YP_002428550.1| - 1.3e-06 28.6 0.3 7e-05 23.0 0.0 2.4 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Nitro_FeMo-Co PF02579.17 gi|218884168|ref|YP_002428550.1| - 0.001 19.3 0.2 5.4 7.4 0.0 3.3 3 0 0 3 3 3 2 Dinitrogenase iron-molybdenum cofactor Shikimate_DH PF01488.20 gi|218884168|ref|YP_002428550.1| - 0.0076 16.3 0.4 0.029 14.4 0.1 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|218884168|ref|YP_002428550.1| - 0.0096 15.5 0.1 0.051 13.1 0.0 2.2 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|218884168|ref|YP_002428550.1| - 0.014 15.9 0.0 0.096 13.3 0.0 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|218884168|ref|YP_002428550.1| - 0.034 14.0 0.1 0.19 11.6 0.0 2.1 2 2 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|218884168|ref|YP_002428550.1| - 0.073 13.9 0.0 0.37 11.6 0.0 2.3 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|218884168|ref|YP_002428550.1| - 0.56 10.5 3.2 16 5.8 0.8 3.1 3 2 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain DUF5603 PF18231.1 gi|218884169|ref|YP_002428551.1| - 4e-23 81.7 0.0 7e-23 81.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5603) ParBc PF02195.18 gi|218884169|ref|YP_002428551.1| - 1.2e-12 48.0 0.0 1.9e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|218884169|ref|YP_002428551.1| - 9.5e-05 21.4 0.0 0.056 12.3 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1015) Imm9 PF15587.6 gi|218884169|ref|YP_002428551.1| - 0.12 12.0 0.2 0.24 11.0 0.2 1.4 1 0 0 1 1 1 0 Immunity protein 9 DndB PF14072.6 gi|218884169|ref|YP_002428551.1| - 0.14 11.4 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 DNA-sulfur modification-associated eRF1_2 PF03464.15 gi|218884171|ref|YP_002428553.1| - 1.2e-40 138.9 0.0 2e-40 138.2 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|218884171|ref|YP_002428553.1| - 5e-20 72.1 0.4 1.6e-18 67.2 0.1 2.9 2 1 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|218884171|ref|YP_002428553.1| - 4.1e-19 69.2 0.0 2.2e-18 66.8 0.0 2.1 2 1 1 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|218884171|ref|YP_002428553.1| - 3.4e-12 46.8 0.1 1.2e-11 45.0 0.0 1.9 3 0 0 3 3 3 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|218884171|ref|YP_002428553.1| - 0.0068 16.4 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 DUF86 PF01934.17 gi|218884171|ref|YP_002428553.1| - 0.03 14.2 0.0 0.24 11.3 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function DUF86 SpoU_sub_bind PF08032.12 gi|218884171|ref|YP_002428553.1| - 0.2 11.9 2.0 0.33 11.2 0.1 2.4 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding LPG_synthase_TM PF03706.13 gi|218884172|ref|YP_002428554.1| - 4.5e-19 69.1 20.1 6.5e-19 68.6 20.1 1.3 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Ribosomal_L40e PF01020.17 gi|218884173|ref|YP_002428555.1| - 4.3e-09 36.1 2.8 4.9e-09 35.9 2.8 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|218884173|ref|YP_002428555.1| - 0.00015 21.3 2.8 0.00022 20.8 2.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|218884173|ref|YP_002428555.1| - 0.0033 17.4 1.6 0.0041 17.1 1.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon CpXC PF14353.6 gi|218884173|ref|YP_002428555.1| - 0.0036 17.3 0.4 0.024 14.7 0.0 1.9 1 1 1 2 2 2 1 CpXC protein zf-RanBP PF00641.18 gi|218884173|ref|YP_002428555.1| - 0.029 13.7 2.6 0.1 11.9 2.5 1.9 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.6 gi|218884173|ref|YP_002428555.1| - 0.036 13.5 1.7 0.05 13.0 1.7 1.2 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|218884173|ref|YP_002428555.1| - 0.052 13.6 0.3 0.061 13.3 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|218884173|ref|YP_002428555.1| - 0.057 13.1 1.8 0.13 12.0 1.8 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain DUF35_N PF12172.8 gi|218884173|ref|YP_002428555.1| - 0.06 13.2 4.8 0.082 12.8 4.8 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-CCHC_2 PF13696.6 gi|218884173|ref|YP_002428555.1| - 1.1 9.1 8.7 6.4 6.7 1.8 2.2 2 0 0 2 2 2 0 Zinc knuckle DUF2204 PF09970.9 gi|218884174|ref|YP_002428556.1| - 9.2e-67 224.2 4.0 1e-66 224.0 4.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) PrpR_N PF06506.11 gi|218884174|ref|YP_002428556.1| - 0.065 12.8 0.6 1.9 8.1 0.1 2.2 2 0 0 2 2 2 0 Propionate catabolism activator Endonuclease_5 PF04493.14 gi|218884175|ref|YP_002428557.1| - 1.4e-52 178.3 0.0 1.6e-52 178.0 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V BPD_transp_1 PF00528.22 gi|218884176|ref|YP_002428558.1| - 4.5e-23 81.9 20.7 4.5e-23 81.9 20.7 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|218884176|ref|YP_002428558.1| - 0.00014 21.8 0.0 0.00014 21.8 0.0 2.8 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|218884177|ref|YP_002428559.1| - 1.5e-41 142.2 8.1 1.5e-41 142.2 8.1 2.0 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|218884178|ref|YP_002428560.1| - 4.9e-75 252.8 2.8 8e-75 252.1 2.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ACT_7 PF13840.6 gi|218884179|ref|YP_002428561.1| - 7.9e-10 38.4 0.6 2e-09 37.1 0.4 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|218884179|ref|YP_002428561.1| - 9.7e-05 22.1 1.2 0.00087 19.0 0.1 2.7 3 0 0 3 3 3 1 ACT domain HTH_33 PF13592.6 gi|218884179|ref|YP_002428561.1| - 0.012 15.3 0.0 0.036 13.7 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix CTP_transf_like PF01467.26 gi|218884180|ref|YP_002428562.1| - 1.2e-11 44.9 0.0 1e-10 42.0 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|218884180|ref|YP_002428562.1| - 0.0041 16.4 0.0 0.012 14.8 0.1 1.6 2 0 0 2 2 2 1 HIGH Nucleotidyl Transferase MoCF_biosynth PF00994.24 gi|218884181|ref|YP_002428563.1| - 6e-33 113.5 0.0 8.6e-33 113.0 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain PhnA_Zn_Ribbon PF08274.12 gi|218884182|ref|YP_002428564.1| - 0.0019 18.1 0.3 1 9.4 0.0 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.7 gi|218884182|ref|YP_002428564.1| - 0.0029 17.5 3.5 0.19 11.7 3.0 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain YacG PF03884.14 gi|218884182|ref|YP_002428564.1| - 0.0032 17.2 1.2 0.21 11.4 0.2 2.2 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG zf-ribbon_3 PF13248.6 gi|218884182|ref|YP_002428564.1| - 0.0034 16.7 3.5 0.13 11.7 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|218884182|ref|YP_002428564.1| - 0.0041 17.0 0.4 0.011 15.6 0.4 1.7 1 1 0 1 1 1 1 SprT-like zinc ribbon domain zf-C2H2_9 PF16293.5 gi|218884182|ref|YP_002428564.1| - 0.0058 16.4 0.4 0.34 10.8 0.0 2.1 2 0 0 2 2 2 1 C2H2 type zinc-finger (1 copy) DUF4428 PF14471.6 gi|218884182|ref|YP_002428564.1| - 0.0063 16.4 0.0 0.0087 16.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) DUF3268 PF11672.8 gi|218884182|ref|YP_002428564.1| - 0.0085 16.4 0.1 0.0089 16.4 0.1 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain zinc_ribbon_9 PF14369.6 gi|218884182|ref|YP_002428564.1| - 0.017 15.3 2.2 1.2 9.5 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|218884182|ref|YP_002428564.1| - 0.02 15.0 0.9 6.1 7.0 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-Di19 PF05605.12 gi|218884182|ref|YP_002428564.1| - 0.023 15.0 0.9 0.9 9.9 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn_Tnp_IS1 PF03811.13 gi|218884182|ref|YP_002428564.1| - 0.03 14.0 2.8 0.45 10.3 0.5 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-TFIIB PF13453.6 gi|218884182|ref|YP_002428564.1| - 0.03 13.6 0.8 0.066 12.6 0.8 1.5 1 1 0 1 1 1 0 Transcription factor zinc-finger UPF0547 PF10571.9 gi|218884182|ref|YP_002428564.1| - 0.046 13.8 1.6 1.5 8.9 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2197 PF09963.9 gi|218884182|ref|YP_002428564.1| - 0.067 13.5 1.3 0.088 13.1 0.3 1.7 2 1 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2197) zf-C2H2_4 PF13894.6 gi|218884182|ref|YP_002428564.1| - 0.075 13.9 3.5 1.6 9.8 0.4 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.12 gi|218884182|ref|YP_002428564.1| - 0.08 12.5 5.8 1.5 8.4 0.6 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|218884182|ref|YP_002428564.1| - 0.092 13.4 0.9 18 6.1 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.6 gi|218884182|ref|YP_002428564.1| - 0.11 12.9 4.2 0.67 10.4 4.2 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar ADD_ATRX PF17981.1 gi|218884182|ref|YP_002428564.1| - 0.13 12.2 0.6 0.18 11.7 0.6 1.3 1 0 0 1 1 1 0 Cysteine Rich ADD domain zf-ACC PF17848.1 gi|218884182|ref|YP_002428564.1| - 0.15 12.2 3.2 7.5 6.7 0.5 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain CpXC PF14353.6 gi|218884182|ref|YP_002428564.1| - 0.17 12.0 0.1 6.9 6.8 0.0 2.0 2 0 0 2 2 2 0 CpXC protein Cys_rich_CPXG PF14255.6 gi|218884182|ref|YP_002428564.1| - 0.32 10.9 2.8 1.3 9.0 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_10 PF10058.9 gi|218884182|ref|YP_002428564.1| - 0.35 10.6 2.8 2.2 8.1 0.3 2.0 1 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-C2HC_2 PF13913.6 gi|218884182|ref|YP_002428564.1| - 0.4 10.7 4.3 1.2 9.1 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-H2C2_2 PF13465.6 gi|218884182|ref|YP_002428564.1| - 0.47 11.0 2.8 15 6.2 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DNA_ligase_ZBD PF03119.16 gi|218884182|ref|YP_002428564.1| - 0.89 9.6 5.9 1 9.4 0.6 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Peptidase_M19 PF01244.21 gi|218884183|ref|YP_002428565.1| - 2.4e-71 240.5 0.0 2.8e-71 240.3 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 gi|218884183|ref|YP_002428565.1| - 0.12 12.1 0.0 0.3 10.8 0.0 1.6 1 1 0 1 1 1 0 Amidohydrolase Mod_r PF07200.13 gi|218884184|ref|YP_002428566.1| - 0.0011 19.1 1.3 0.002 18.2 0.7 1.7 2 0 0 2 2 2 1 Modifier of rudimentary (Mod(r)) protein DivIC PF04977.15 gi|218884184|ref|YP_002428566.1| - 0.0019 17.9 0.4 0.004 16.9 0.4 1.6 1 0 0 1 1 1 1 Septum formation initiator Sigma70_r4_2 PF08281.12 gi|218884184|ref|YP_002428566.1| - 0.0034 17.0 0.0 0.0096 15.6 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Prefoldin_2 PF01920.20 gi|218884184|ref|YP_002428566.1| - 0.011 15.7 2.0 0.024 14.6 2.0 1.7 1 1 0 1 1 1 0 Prefoldin subunit ZapB PF06005.12 gi|218884184|ref|YP_002428566.1| - 0.011 16.2 3.5 0.011 16.2 3.5 1.7 2 0 0 2 2 2 0 Cell division protein ZapB Snapin_Pallidin PF14712.6 gi|218884184|ref|YP_002428566.1| - 0.015 15.7 0.7 0.03 14.7 0.5 1.7 1 1 0 1 1 1 0 Snapin/Pallidin FlaC_arch PF05377.11 gi|218884184|ref|YP_002428566.1| - 0.02 15.2 3.3 0.11 13.0 0.5 2.9 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Wtap PF17098.5 gi|218884184|ref|YP_002428566.1| - 0.021 14.8 3.2 0.04 13.8 3.2 1.5 1 0 0 1 1 1 0 WTAP/Mum2p family Spc7 PF08317.11 gi|218884184|ref|YP_002428566.1| - 0.025 13.5 1.0 0.032 13.1 1.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Med9 PF07544.13 gi|218884184|ref|YP_002428566.1| - 0.028 14.5 1.6 0.3 11.2 0.6 2.6 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Atg14 PF10186.9 gi|218884184|ref|YP_002428566.1| - 0.044 12.9 0.3 0.054 12.6 0.3 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 UPF0449 PF15136.6 gi|218884184|ref|YP_002428566.1| - 0.11 13.0 1.1 1.7 9.1 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 DUF555 PF04475.12 gi|218884184|ref|YP_002428566.1| - 0.13 12.6 0.0 0.21 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF555) KxDL PF10241.9 gi|218884184|ref|YP_002428566.1| - 0.17 12.2 1.9 0.38 11.0 1.9 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein TMF_DNA_bd PF12329.8 gi|218884184|ref|YP_002428566.1| - 1.2 9.1 8.2 0.35 10.9 2.6 2.7 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding MFS_1 PF07690.16 gi|218884187|ref|YP_002428569.1| - 4.2e-34 118.0 48.8 9.2e-34 116.9 48.5 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|218884187|ref|YP_002428569.1| - 1e-11 44.4 38.0 6.4e-11 41.8 13.6 2.7 3 0 0 3 3 3 2 Sugar (and other) transporter OATP PF03137.20 gi|218884187|ref|YP_002428569.1| - 0.013 13.8 20.8 0.01 14.2 4.1 3.3 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Hydrolase_4 PF12146.8 gi|218884188|ref|YP_002428570.1| - 2.6e-20 72.7 0.1 6.5e-18 64.9 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|218884188|ref|YP_002428570.1| - 8.7e-18 64.9 0.2 7.2e-17 61.9 0.3 1.9 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|218884188|ref|YP_002428570.1| - 1.7e-15 57.4 0.0 4.8e-15 55.9 0.0 1.6 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|218884188|ref|YP_002428570.1| - 4.2e-14 53.7 0.0 6.3e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|218884188|ref|YP_002428570.1| - 2e-13 50.3 0.0 1.9e-07 30.8 0.0 2.0 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.18 gi|218884188|ref|YP_002428570.1| - 5.5e-10 39.2 0.0 1.4e-07 31.3 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family BAAT_C PF08840.11 gi|218884188|ref|YP_002428570.1| - 4.9e-06 26.6 0.0 8.3e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.13 gi|218884188|ref|YP_002428570.1| - 6e-05 22.8 0.0 0.00047 19.9 0.0 2.1 1 1 1 2 2 2 1 Serine hydrolase (FSH1) DUF829 PF05705.14 gi|218884188|ref|YP_002428570.1| - 0.00016 21.6 0.0 0.00023 21.2 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF829) Esterase PF00756.20 gi|218884188|ref|YP_002428570.1| - 0.00022 21.0 0.0 0.00032 20.4 0.0 1.3 1 0 0 1 1 1 1 Putative esterase AXE1 PF05448.12 gi|218884188|ref|YP_002428570.1| - 0.0017 17.1 0.5 0.68 8.6 0.0 2.2 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) DUF1749 PF08538.10 gi|218884188|ref|YP_002428570.1| - 0.0019 17.3 0.4 0.0032 16.6 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1749) DUF676 PF05057.14 gi|218884188|ref|YP_002428570.1| - 0.0025 17.3 0.0 0.004 16.7 0.0 1.2 1 0 0 1 1 1 1 Putative serine esterase (DUF676) Lipase PF00151.19 gi|218884188|ref|YP_002428570.1| - 0.0042 16.4 0.0 0.0063 15.9 0.0 1.1 1 0 0 1 1 1 1 Lipase DUF915 PF06028.11 gi|218884188|ref|YP_002428570.1| - 0.02 14.3 0.1 0.096 12.0 0.0 2.0 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) DUF2048 PF09752.9 gi|218884188|ref|YP_002428570.1| - 0.026 13.6 0.0 2.3 7.3 0.0 2.1 2 0 0 2 2 2 0 Abhydrolase domain containing 18 Abhydrolase_3 PF07859.13 gi|218884188|ref|YP_002428570.1| - 0.037 13.9 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold LIP PF03583.14 gi|218884188|ref|YP_002428570.1| - 0.076 12.3 0.2 0.76 9.1 0.2 2.0 2 0 0 2 2 2 0 Secretory lipase Palm_thioest PF02089.15 gi|218884188|ref|YP_002428570.1| - 0.21 11.4 0.0 0.32 10.8 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase GDPD PF03009.17 gi|218884189|ref|YP_002428571.1| - 2.7e-27 96.2 0.0 2e-25 90.0 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|218884189|ref|YP_002428571.1| - 0.0096 15.5 0.1 0.028 14.0 0.0 1.8 1 1 1 2 2 2 1 Phosphatidylinositol-specific phospholipase C, X domain ThiP_synth PF10120.9 gi|218884189|ref|YP_002428571.1| - 0.075 12.6 0.1 2.8 7.5 0.0 2.3 2 0 0 2 2 2 0 Thiamine-phosphate synthase SQAPI PF16845.5 gi|218884189|ref|YP_002428571.1| - 0.087 13.2 0.1 0.18 12.2 0.1 1.5 1 0 0 1 1 1 0 Aspartic acid proteinase inhibitor DUF1667 PF07892.11 gi|218884190|ref|YP_002428572.1| - 1.8e-29 101.6 2.5 2.4e-29 101.2 2.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1667) DUF5498 PF17602.2 gi|218884190|ref|YP_002428572.1| - 0.071 13.6 0.0 0.088 13.3 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5498) Pyr_redox_2 PF07992.14 gi|218884191|ref|YP_002428573.1| - 2.4e-32 112.4 2.8 3e-32 112.0 2.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|218884191|ref|YP_002428573.1| - 1.5e-11 44.3 5.1 1.8e-11 44.0 0.5 2.7 3 2 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|218884191|ref|YP_002428573.1| - 2.4e-11 44.0 5.0 6.3e-05 23.5 0.2 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|218884191|ref|YP_002428573.1| - 1.8e-10 40.6 4.4 0.00021 20.7 0.1 3.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|218884191|ref|YP_002428573.1| - 3.5e-08 32.9 10.9 3.2e-05 23.2 1.6 3.5 2 1 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|218884191|ref|YP_002428573.1| - 7.8e-08 31.4 6.3 2.3e-05 23.3 0.4 3.7 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|218884191|ref|YP_002428573.1| - 1.3e-06 28.5 1.1 0.0034 17.6 0.2 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|218884191|ref|YP_002428573.1| - 1.7e-05 24.6 15.9 0.013 15.1 1.8 4.1 2 2 2 4 4 4 4 FAD dependent oxidoreductase GIDA PF01134.22 gi|218884191|ref|YP_002428573.1| - 3.3e-05 23.2 0.8 3.3e-05 23.2 0.8 2.4 2 1 1 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|218884191|ref|YP_002428573.1| - 0.00058 19.2 5.4 0.0045 16.3 0.3 2.6 3 0 0 3 3 3 2 Thi4 family FAD_binding_3 PF01494.19 gi|218884191|ref|YP_002428573.1| - 0.00067 19.0 4.7 0.077 12.2 0.2 3.1 3 0 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 gi|218884191|ref|YP_002428573.1| - 0.0041 17.5 0.8 0.09 13.2 0.1 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|218884191|ref|YP_002428573.1| - 0.0042 16.2 5.8 0.048 12.7 0.9 2.8 3 0 0 3 3 3 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|218884191|ref|YP_002428573.1| - 0.028 13.7 4.4 0.15 11.3 0.3 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|218884192|ref|YP_002428574.1| - 2.1e-68 231.5 0.5 3e-68 231.0 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|218884192|ref|YP_002428574.1| - 2.6e-11 43.7 1.4 5.6e-11 42.6 1.4 1.6 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|218884192|ref|YP_002428574.1| - 5e-08 32.5 0.1 0.0068 15.7 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|218884192|ref|YP_002428574.1| - 2.9e-06 27.4 0.0 5.9e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|218884192|ref|YP_002428574.1| - 1.7e-05 25.3 1.0 0.034 14.7 0.3 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|218884192|ref|YP_002428574.1| - 0.00047 19.4 0.1 0.0016 17.6 0.1 1.7 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|218884192|ref|YP_002428574.1| - 0.00062 19.1 2.1 0.24 10.6 0.5 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|218884192|ref|YP_002428574.1| - 0.00077 18.6 4.4 0.015 14.4 0.2 2.9 3 0 0 3 3 3 1 Lycopene cyclase protein Thi4 PF01946.17 gi|218884192|ref|YP_002428574.1| - 0.0011 18.3 0.5 0.0011 18.3 0.5 2.1 2 0 0 2 2 2 1 Thi4 family TrkA_N PF02254.18 gi|218884192|ref|YP_002428574.1| - 0.0012 19.1 0.1 0.0037 17.5 0.1 1.9 1 0 0 1 1 1 1 TrkA-N domain FAD_binding_3 PF01494.19 gi|218884192|ref|YP_002428574.1| - 0.0044 16.3 0.4 0.0076 15.5 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain K_oxygenase PF13434.6 gi|218884192|ref|YP_002428574.1| - 0.031 13.4 0.0 0.045 12.9 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|218884192|ref|YP_002428574.1| - 0.033 14.2 0.6 0.57 10.2 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|218884192|ref|YP_002428574.1| - 0.043 13.7 0.2 0.077 12.9 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|218884192|ref|YP_002428574.1| - 0.05 12.3 1.9 4.3 5.9 0.4 2.2 2 0 0 2 2 2 0 HI0933-like protein UDPG_MGDP_dh_N PF03721.14 gi|218884192|ref|YP_002428574.1| - 0.056 13.0 0.1 0.1 12.2 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|218884192|ref|YP_002428574.1| - 0.094 12.0 0.1 0.52 9.6 0.0 2.2 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|218884192|ref|YP_002428574.1| - 0.12 11.6 0.0 1.2 8.4 0.0 2.0 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|218884192|ref|YP_002428574.1| - 0.18 12.1 1.7 0.78 10.0 0.4 2.5 3 0 0 3 3 2 0 Saccharopine dehydrogenase NADP binding domain Wax2_C PF12076.8 gi|218884192|ref|YP_002428574.1| - 0.2 11.4 0.1 0.36 10.5 0.1 1.3 1 0 0 1 1 1 0 WAX2 C-terminal domain Trp_halogenase PF04820.14 gi|218884192|ref|YP_002428574.1| - 0.76 8.6 4.6 0.93 8.3 0.7 2.0 2 0 0 2 2 2 0 Tryptophan halogenase FGGY_N PF00370.21 gi|218884193|ref|YP_002428575.1| - 8.7e-68 228.5 0.0 1.1e-67 228.1 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|218884193|ref|YP_002428575.1| - 1.8e-58 197.6 0.1 2.6e-58 197.0 0.1 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Hydrolase_4 PF12146.8 gi|218884194|ref|YP_002428576.1| - 2.3e-72 243.1 0.0 2.7e-72 242.9 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|218884194|ref|YP_002428576.1| - 3.5e-21 76.0 0.1 4.2e-16 59.4 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|218884194|ref|YP_002428576.1| - 1.3e-15 58.6 0.0 1.8e-15 58.1 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|218884194|ref|YP_002428576.1| - 5.6e-10 39.1 0.0 5.1e-07 29.4 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.16 gi|218884194|ref|YP_002428576.1| - 1.1e-06 28.7 0.0 0.0042 16.9 0.0 2.4 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase DLH PF01738.18 gi|218884194|ref|YP_002428576.1| - 3.9e-05 23.3 0.0 0.0043 16.6 0.0 2.2 2 0 0 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|218884194|ref|YP_002428576.1| - 7.3e-05 22.5 0.0 0.00013 21.7 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Peptidase_S15 PF02129.18 gi|218884194|ref|YP_002428576.1| - 0.00095 18.8 0.0 0.24 11.0 0.0 2.4 3 0 0 3 3 3 1 X-Pro dipeptidyl-peptidase (S15 family) DUF1749 PF08538.10 gi|218884194|ref|YP_002428576.1| - 0.0031 16.6 0.1 0.027 13.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1749) BAAT_C PF08840.11 gi|218884194|ref|YP_002428576.1| - 0.0039 17.1 0.0 0.012 15.5 0.0 1.7 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal LCAT PF02450.15 gi|218884194|ref|YP_002428576.1| - 0.0051 16.0 0.0 0.0078 15.4 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase LIDHydrolase PF10230.9 gi|218884194|ref|YP_002428576.1| - 0.009 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Lipid-droplet associated hydrolase Esterase PF00756.20 gi|218884194|ref|YP_002428576.1| - 0.01 15.5 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Abhydrolase_3 PF07859.13 gi|218884194|ref|YP_002428576.1| - 0.017 15.0 0.0 0.032 14.1 0.0 1.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold PhoPQ_related PF10142.9 gi|218884194|ref|YP_002428576.1| - 0.02 13.6 0.0 0.025 13.2 0.0 1.1 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein Palm_thioest PF02089.15 gi|218884194|ref|YP_002428576.1| - 0.022 14.6 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 Palmitoyl protein thioesterase Abhydrolase_5 PF12695.7 gi|218884194|ref|YP_002428576.1| - 0.023 14.5 0.0 0.99 9.2 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family Ser_hydrolase PF06821.13 gi|218884194|ref|YP_002428576.1| - 0.03 14.2 0.0 0.096 12.5 0.0 1.8 2 0 0 2 2 2 0 Serine hydrolase PGAP1 PF07819.13 gi|218884194|ref|YP_002428576.1| - 0.035 13.8 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein Caps_synth_CapC PF14102.6 gi|218884194|ref|YP_002428576.1| - 0.036 14.5 0.3 0.057 13.9 0.3 1.2 1 0 0 1 1 1 0 Capsule biosynthesis CapC AXE1 PF05448.12 gi|218884194|ref|YP_002428576.1| - 0.05 12.3 0.0 0.095 11.4 0.0 1.4 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) DUF900 PF05990.12 gi|218884194|ref|YP_002428576.1| - 0.051 13.1 0.0 0.45 10.0 0.0 1.9 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF900) DUF915 PF06028.11 gi|218884194|ref|YP_002428576.1| - 0.086 12.2 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) DUF3089 PF11288.8 gi|218884194|ref|YP_002428576.1| - 0.21 11.1 0.0 0.31 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) Peptidase_S24 PF00717.23 gi|218884196|ref|YP_002428578.1| - 3e-07 30.3 0.6 5.5e-07 29.4 0.6 1.4 1 0 0 1 1 1 1 Peptidase S24-like VCBS PF13517.6 gi|218884197|ref|YP_002428579.1| - 0.0027 18.2 2.5 0.3 11.7 0.6 2.5 2 0 0 2 2 2 2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella RWD PF05773.22 gi|218884198|ref|YP_002428580.1| - 0.071 13.4 0.0 0.56 10.5 0.0 2.0 1 1 1 2 2 2 0 RWD domain CARDB PF07705.11 gi|218884198|ref|YP_002428580.1| - 0.076 13.3 0.2 0.13 12.5 0.2 1.4 1 0 0 1 1 1 0 CARDB HCV_NS4a PF01006.20 gi|218884198|ref|YP_002428580.1| - 0.45 10.3 3.4 0.52 10.1 1.1 2.2 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a HTH_45 PF14947.6 gi|218884199|ref|YP_002428581.1| - 7.8e-17 61.0 2.8 1.8e-16 59.9 2.8 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix ColG_sub PF18496.1 gi|218884199|ref|YP_002428581.1| - 0.12 12.6 0.1 0.22 11.7 0.1 1.4 1 0 0 1 1 1 0 Collagenase G catalytic helper subdomain CSS-motif PF12792.7 gi|218884200|ref|YP_002428582.1| - 0.14 11.7 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 CSS motif domain associated with EAL Phage_holin_3_6 PF07332.11 gi|218884201|ref|YP_002428583.1| - 0.00065 19.7 0.2 0.00078 19.5 0.2 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III LMBR1 PF04791.16 gi|218884201|ref|YP_002428583.1| - 0.038 12.9 0.7 0.041 12.8 0.7 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein FixS PF03597.15 gi|218884201|ref|YP_002428583.1| - 6.2 6.6 9.6 5.2 6.9 1.1 2.1 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Ribosomal_S27e PF01667.17 gi|218884202|ref|YP_002428584.1| - 4.3e-17 61.6 0.8 5.2e-17 61.3 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|218884202|ref|YP_002428584.1| - 0.0028 17.1 0.6 0.0041 16.6 0.6 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|218884202|ref|YP_002428584.1| - 0.0073 16.3 0.4 0.01 15.9 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|218884202|ref|YP_002428584.1| - 0.011 15.7 0.2 0.013 15.5 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|218884202|ref|YP_002428584.1| - 0.012 15.7 0.6 0.018 15.1 0.6 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zf-C2H2_3 PF13878.6 gi|218884202|ref|YP_002428584.1| - 0.048 13.5 0.1 4.3 7.2 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Aminotran_1_2 PF00155.21 gi|218884202|ref|YP_002428584.1| - 0.066 12.4 0.0 0.068 12.3 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class I and II A2L_zn_ribbon PF08792.10 gi|218884202|ref|YP_002428584.1| - 0.076 12.8 0.7 9.7 6.0 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|218884202|ref|YP_002428584.1| - 0.13 12.0 3.1 2.1 8.2 3.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|218884202|ref|YP_002428584.1| - 0.15 11.8 1.3 0.27 11.0 1.3 1.5 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein ADK_lid PF05191.14 gi|218884202|ref|YP_002428584.1| - 0.17 11.9 2.2 0.76 9.8 2.2 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid DNA_RNApol_7kD PF03604.13 gi|218884202|ref|YP_002428584.1| - 0.4 10.4 6.1 6.1 6.6 5.8 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-BED PF02892.15 gi|218884202|ref|YP_002428584.1| - 0.75 9.9 3.6 13 5.9 0.5 2.2 1 1 1 2 2 2 0 BED zinc finger Ribosomal_L44 PF00935.19 gi|218884203|ref|YP_002428585.1| - 6.1e-24 84.3 10.9 6.6e-24 84.2 10.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L44 zinc_ribbon_4 PF13717.6 gi|218884203|ref|YP_002428585.1| - 0.011 15.6 0.3 0.018 15.0 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain PHD_4 PF16866.5 gi|218884203|ref|YP_002428585.1| - 0.021 14.9 0.0 0.026 14.6 0.0 1.2 1 0 0 1 1 1 0 PHD-finger Ribosomal_S8e PF01201.22 gi|218884203|ref|YP_002428585.1| - 0.23 11.7 4.5 0.26 11.5 4.5 1.0 1 0 0 1 1 1 0 Ribosomal protein S8e ThiS PF02597.20 gi|218884204|ref|YP_002428586.1| - 9.1e-12 45.5 0.0 1e-11 45.3 0.0 1.0 1 0 0 1 1 1 1 ThiS family Pre-PUA PF17832.1 gi|218884204|ref|YP_002428586.1| - 0.17 12.6 0.0 0.2 12.3 0.0 1.1 1 0 0 1 1 1 0 Pre-PUA-like domain Acetyltransf_CG PF14542.6 gi|218884205|ref|YP_002428587.1| - 1e-20 73.6 0.0 1.7e-20 72.9 0.0 1.4 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 gi|218884205|ref|YP_002428587.1| - 1.6e-05 25.1 0.1 2.8e-05 24.3 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|218884205|ref|YP_002428587.1| - 0.00069 19.7 0.1 0.0022 18.0 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|218884205|ref|YP_002428587.1| - 0.0018 18.7 0.0 0.002 18.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|218884205|ref|YP_002428587.1| - 0.0022 17.5 0.1 0.0022 17.5 0.1 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_10 PF13673.7 gi|218884205|ref|YP_002428587.1| - 0.033 14.1 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain STI1 PF17830.1 gi|218884207|ref|YP_002428589.1| - 0.029 14.3 0.0 0.036 14.0 0.0 1.2 1 0 0 1 1 1 0 STI1 domain DNA_primase_lrg PF04104.14 gi|218884209|ref|YP_002428591.1| - 9.7e-33 113.7 0.0 1.8e-32 112.8 0.0 1.4 2 0 0 2 2 2 1 Eukaryotic and archaeal DNA primase, large subunit HTH_24 PF13412.6 gi|218884212|ref|YP_002428594.1| - 4.1e-12 45.5 0.1 8.9e-12 44.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|218884212|ref|YP_002428594.1| - 3e-10 40.0 0.0 5.1e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|218884212|ref|YP_002428594.1| - 2.1e-09 37.1 0.0 4.6e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|218884212|ref|YP_002428594.1| - 4e-08 32.9 0.0 9.5e-08 31.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|218884212|ref|YP_002428594.1| - 2.1e-06 27.6 0.0 5.4e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|218884212|ref|YP_002428594.1| - 1.3e-05 25.6 0.0 3.5e-05 24.2 0.1 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|218884212|ref|YP_002428594.1| - 0.00013 21.7 0.0 0.0003 20.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|218884212|ref|YP_002428594.1| - 0.00045 20.0 0.1 0.0009 19.0 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|218884212|ref|YP_002428594.1| - 0.00047 20.0 0.0 0.0008 19.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|218884212|ref|YP_002428594.1| - 0.0012 18.8 0.1 0.0025 17.7 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RNA_pol_Rpc34 PF05158.12 gi|218884212|ref|YP_002428594.1| - 0.0013 18.2 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_34 PF13601.6 gi|218884212|ref|YP_002428594.1| - 0.0021 18.2 0.1 0.0041 17.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.16 gi|218884212|ref|YP_002428594.1| - 0.0039 16.7 0.1 0.011 15.3 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|218884212|ref|YP_002428594.1| - 0.0054 16.8 0.1 0.012 15.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|218884212|ref|YP_002428594.1| - 0.0062 16.3 0.1 0.014 15.1 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|218884212|ref|YP_002428594.1| - 0.0062 16.5 0.1 0.016 15.2 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_1 PF00126.27 gi|218884212|ref|YP_002428594.1| - 0.013 15.4 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|218884212|ref|YP_002428594.1| - 0.013 15.6 0.0 0.097 12.9 0.0 2.3 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.12 gi|218884212|ref|YP_002428594.1| - 0.022 15.0 0.0 0.056 13.7 0.0 1.7 1 0 0 1 1 1 0 PaaX-like protein B-block_TFIIIC PF04182.12 gi|218884212|ref|YP_002428594.1| - 0.022 14.9 0.0 0.046 13.9 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Rrf2 PF02082.20 gi|218884212|ref|YP_002428594.1| - 0.037 14.4 0.0 0.072 13.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF4423 PF14394.6 gi|218884212|ref|YP_002428594.1| - 0.054 13.2 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RPA_C PF08784.11 gi|218884212|ref|YP_002428594.1| - 0.11 13.1 0.0 0.24 12.1 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal DUF4364 PF14277.6 gi|218884212|ref|YP_002428594.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_29 PF13551.6 gi|218884212|ref|YP_002428594.1| - 0.14 12.2 0.1 0.23 11.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Tmpp129 PF10272.9 gi|218884212|ref|YP_002428594.1| - 0.27 10.5 0.1 0.39 10.0 0.1 1.2 1 0 0 1 1 1 0 Putative transmembrane protein precursor DUF3377 PF11857.8 gi|218884212|ref|YP_002428594.1| - 3.9 7.5 6.7 5 7.1 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3377) CxxCxxCC PF03692.15 gi|218884215|ref|YP_002428597.1| - 1.5e-10 41.6 0.1 2.2e-10 41.1 0.1 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Aldo_ket_red PF00248.21 gi|218884216|ref|YP_002428598.1| - 6.1e-53 179.9 0.1 1.1e-50 172.5 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family HTH_24 PF13412.6 gi|218884217|ref|YP_002428599.1| - 6.1e-05 22.5 0.3 0.00018 21.0 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|218884217|ref|YP_002428599.1| - 0.00018 21.2 0.1 0.00033 20.4 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|218884217|ref|YP_002428599.1| - 0.0099 15.8 0.1 0.018 15.0 0.1 1.4 1 0 0 1 1 1 1 HTH domain FeoC PF09012.10 gi|218884217|ref|YP_002428599.1| - 0.18 11.9 0.0 1.2 9.3 0.0 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator ADK PF00406.22 gi|218884219|ref|YP_002428601.1| - 1.3e-49 168.2 0.0 1.6e-49 167.9 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|218884219|ref|YP_002428601.1| - 1.2e-23 84.1 0.0 2e-23 83.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|218884219|ref|YP_002428601.1| - 1.6e-11 43.9 3.9 2.9e-11 43.1 3.9 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|218884219|ref|YP_002428601.1| - 1.1e-08 35.6 0.0 2e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|218884219|ref|YP_002428601.1| - 9.5e-06 26.0 0.2 0.066 13.5 0.1 3.0 3 0 0 3 3 3 2 Hydin Adenylate kinase-like domain AAA_33 PF13671.6 gi|218884219|ref|YP_002428601.1| - 0.0037 17.4 0.0 0.0079 16.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|218884219|ref|YP_002428601.1| - 0.012 15.3 0.1 0.26 10.9 0.0 2.5 3 0 0 3 3 3 0 Thymidylate kinase AAA_28 PF13521.6 gi|218884219|ref|YP_002428601.1| - 0.013 15.8 0.0 0.024 14.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|218884219|ref|YP_002428601.1| - 0.057 13.3 0.0 0.12 12.3 0.0 1.5 1 1 0 1 1 1 0 NACHT domain Inos-1-P_synth PF01658.17 gi|218884220|ref|YP_002428602.1| - 1.3e-18 67.2 0.0 2.5e-18 66.3 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|218884220|ref|YP_002428602.1| - 0.00093 18.7 0.0 0.0013 18.2 0.0 1.2 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase PadR PF03551.14 gi|218884221|ref|YP_002428603.1| - 1.2e-05 25.1 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PaaX PF07848.12 gi|218884221|ref|YP_002428603.1| - 0.00022 21.4 0.1 0.00035 20.7 0.1 1.3 1 0 0 1 1 1 1 PaaX-like protein HTH_12 PF08461.10 gi|218884221|ref|YP_002428603.1| - 0.0019 18.1 0.1 0.0029 17.5 0.1 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Penicillinase_R PF03965.16 gi|218884221|ref|YP_002428603.1| - 0.0032 17.8 0.0 0.0045 17.3 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor CobS_N PF12556.8 gi|218884221|ref|YP_002428603.1| - 0.025 14.3 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 Cobaltochelatase CobS subunit N terminal RTP PF02334.16 gi|218884221|ref|YP_002428603.1| - 0.067 13.8 0.0 0.093 13.4 0.0 1.4 1 1 0 1 1 1 0 Replication terminator protein DUF4364 PF14277.6 gi|218884221|ref|YP_002428603.1| - 0.08 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|218884221|ref|YP_002428603.1| - 0.098 12.6 0.6 0.3 11.0 0.1 2.1 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB S10_plectin PF03501.15 gi|218884221|ref|YP_002428603.1| - 0.12 12.5 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Plectin/S10 domain tRNA-synt_2 PF00152.20 gi|218884222|ref|YP_002428604.1| - 4.3e-86 288.8 0.2 6.7e-86 288.2 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|218884222|ref|YP_002428604.1| - 0.028 13.9 0.2 0.11 12.0 0.1 1.9 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) DUF4340 PF14238.6 gi|218884222|ref|YP_002428604.1| - 0.11 12.6 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4340) TetR_N PF00440.23 gi|218884222|ref|YP_002428604.1| - 0.14 11.9 0.0 0.34 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sdh_cyt PF01127.22 gi|218884224|ref|YP_002428606.1| - 0.22 11.6 0.1 0.82 9.7 0.0 2.0 2 1 0 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Inositol_P PF00459.25 gi|218884225|ref|YP_002428607.1| - 1.1e-08 35.0 0.0 2e-08 34.1 0.0 1.4 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|218884225|ref|YP_002428607.1| - 2.1e-07 30.6 0.0 3.3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Peptidase_M24 PF00557.24 gi|218884226|ref|YP_002428608.1| - 1.4e-57 194.7 0.0 1.8e-57 194.4 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|218884226|ref|YP_002428608.1| - 4.1e-11 43.7 0.0 6.4e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF1194 PF06707.11 gi|218884226|ref|YP_002428608.1| - 0.011 14.9 0.1 0.017 14.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1194) C1_2 PF03107.16 gi|218884227|ref|YP_002428609.1| - 0.054 13.8 0.1 0.07 13.5 0.1 1.2 1 0 0 1 1 1 0 C1 domain DUF2089 PF09862.9 gi|218884227|ref|YP_002428609.1| - 0.12 12.4 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) GTP_cyclohydro2 PF00925.20 gi|218884228|ref|YP_002428610.1| - 0.055 13.1 0.1 0.079 12.6 0.1 1.2 1 0 0 1 1 1 0 GTP cyclohydrolase II Aminotran_5 PF00266.19 gi|218884229|ref|YP_002428611.1| - 3.8e-37 128.1 0.0 4.3e-37 127.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|218884229|ref|YP_002428611.1| - 2.7e-06 26.8 0.0 3.8e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.16 gi|218884229|ref|YP_002428611.1| - 0.00073 18.5 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein ApoLp-III PF07464.11 gi|218884230|ref|YP_002428612.1| - 0.00013 22.1 3.1 0.0013 18.9 0.5 3.0 1 1 1 2 2 2 1 Apolipophorin-III precursor (apoLp-III) Atg14 PF10186.9 gi|218884230|ref|YP_002428612.1| - 0.00052 19.2 1.1 0.00052 19.2 1.1 1.8 1 1 1 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 RHH_1 PF01402.21 gi|218884230|ref|YP_002428612.1| - 0.00083 19.2 14.0 0.00088 19.1 0.4 4.4 3 1 0 3 3 3 1 Ribbon-helix-helix protein, copG family Baculo_PEP_C PF04513.12 gi|218884230|ref|YP_002428612.1| - 0.0012 18.8 0.5 0.64 10.0 0.0 3.4 3 1 1 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus SWI-SNF_Ssr4 PF08549.10 gi|218884230|ref|YP_002428612.1| - 0.0021 16.8 2.8 0.003 16.3 2.8 1.2 1 0 0 1 1 1 1 Fungal domain of unknown function (DUF1750) Phasin_2 PF09361.10 gi|218884230|ref|YP_002428612.1| - 0.0035 17.6 3.5 1.2 9.4 0.0 3.4 2 1 0 2 2 2 1 Phasin protein RHH_8 PF17723.1 gi|218884230|ref|YP_002428612.1| - 0.0079 16.4 1.1 0.089 13.0 0.1 2.4 2 0 0 2 2 2 1 Ribbon-Helix-Helix transcriptional regulator family DUF2937 PF11157.8 gi|218884230|ref|YP_002428612.1| - 0.016 14.9 0.1 0.09 12.5 0.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2937) CorA PF01544.18 gi|218884230|ref|YP_002428612.1| - 0.02 14.3 6.5 0.025 13.9 2.1 2.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF892 PF05974.12 gi|218884230|ref|YP_002428612.1| - 0.021 14.8 1.6 0.34 10.9 0.1 3.1 2 1 2 4 4 4 0 Domain of unknown function (DUF892) AAA_32 PF13654.6 gi|218884230|ref|YP_002428612.1| - 0.038 12.8 3.9 0.022 13.6 0.9 1.9 1 1 1 2 2 2 0 AAA domain Apolipoprotein PF01442.18 gi|218884230|ref|YP_002428612.1| - 0.04 13.8 16.8 0.94 9.3 16.8 2.7 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain HAMP PF00672.25 gi|218884230|ref|YP_002428612.1| - 0.05 14.0 1.9 0.68 10.4 0.1 3.2 3 1 0 3 3 3 0 HAMP domain Senescence PF06911.12 gi|218884230|ref|YP_002428612.1| - 0.068 13.5 1.8 2.4 8.4 0.7 2.8 1 1 1 2 2 2 0 Senescence-associated protein FANCI_S2 PF14676.6 gi|218884230|ref|YP_002428612.1| - 0.083 13.2 0.1 0.21 11.9 0.0 1.7 2 0 0 2 2 2 0 FANCI solenoid 2 Tape_meas_lam_C PF09718.10 gi|218884230|ref|YP_002428612.1| - 0.11 12.6 0.1 6.6 6.9 0.1 2.9 2 1 1 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Activator-TraM PF11657.8 gi|218884230|ref|YP_002428612.1| - 0.21 11.4 10.2 0.74 9.7 0.4 3.2 1 1 2 3 3 3 0 Transcriptional activator TraM Acyl-CoA_dh_C PF12806.7 gi|218884230|ref|YP_002428612.1| - 0.33 11.1 2.5 16 5.6 0.0 3.4 1 1 3 4 4 4 0 Acetyl-CoA dehydrogenase C-terminal like DUF677 PF05055.12 gi|218884230|ref|YP_002428612.1| - 0.49 9.2 9.5 0.075 11.9 2.0 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF677) Flu_NS2 PF00601.19 gi|218884230|ref|YP_002428612.1| - 0.56 10.5 3.5 26 5.2 0.0 3.2 3 0 0 3 3 3 0 Influenza non-structural protein (NS2) COG2 PF06148.11 gi|218884230|ref|YP_002428612.1| - 0.71 10.0 8.2 1.4 9.0 0.6 3.8 2 1 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF883 PF05957.13 gi|218884230|ref|YP_002428612.1| - 1.1 9.9 15.2 2.4 8.8 1.2 3.7 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF883) PhoU PF01895.19 gi|218884230|ref|YP_002428612.1| - 1.3 9.5 10.4 0.48 10.9 0.8 3.9 2 1 2 4 4 4 0 PhoU domain GreA_GreB_N PF03449.15 gi|218884230|ref|YP_002428612.1| - 1.5 9.1 13.1 0.46 10.7 4.1 3.7 2 2 1 3 3 3 0 Transcription elongation factor, N-terminal DUF2203 PF09969.9 gi|218884230|ref|YP_002428612.1| - 2.5 8.9 9.0 0.95 10.2 1.1 2.9 1 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) ISG65-75 PF11727.8 gi|218884230|ref|YP_002428612.1| - 2.6 7.2 8.9 2.1 7.5 1.2 2.8 1 1 1 3 3 3 0 Invariant surface glycoprotein HK97-gp10_like PF04883.12 gi|218884230|ref|YP_002428612.1| - 3.2 8.8 8.0 9.8 7.2 2.2 3.8 1 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component YtxH PF12732.7 gi|218884230|ref|YP_002428612.1| - 4.1 8.0 12.8 1.8e+04 -4.5 12.8 4.1 1 1 0 1 1 0 0 YtxH-like protein HSCB_C PF07743.13 gi|218884230|ref|YP_002428612.1| - 7.1 7.2 14.8 1.2 9.6 0.7 4.0 1 1 2 3 3 3 0 HSCB C-terminal oligomerisation domain Fucose_iso_C PF02952.17 gi|218884232|ref|YP_002428614.1| - 0.013 15.2 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 L-fucose isomerase, C-terminal domain TFIIB PF00382.19 gi|218884233|ref|YP_002428615.1| - 6.8e-18 64.5 0.0 9.8e-11 41.6 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Glyco_hydro_20b PF02838.15 gi|218884233|ref|YP_002428615.1| - 0.019 15.8 0.7 1.2 9.9 0.7 2.2 1 1 0 1 1 1 0 Glycosyl hydrolase family 20, domain 2 DUF1945 PF09178.10 gi|218884233|ref|YP_002428615.1| - 0.072 13.3 0.0 1.3 9.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1945) Antimicrobial19 PF08225.11 gi|218884233|ref|YP_002428615.1| - 6.4 6.5 5.5 1.2 8.8 0.1 2.5 3 0 0 3 3 3 0 Pseudin antimicrobial peptide Gar1 PF04410.14 gi|218884234|ref|YP_002428616.1| - 6.8e-08 32.4 0.0 7.3e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.16 gi|218884234|ref|YP_002428616.1| - 0.0025 17.9 0.8 0.0033 17.5 0.7 1.4 1 1 0 1 1 1 1 PRC-barrel domain CSD2 PF17876.1 gi|218884234|ref|YP_002428616.1| - 0.074 13.2 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Cold shock domain SRP19 PF01922.17 gi|218884236|ref|YP_002428618.1| - 3.2e-21 76.1 0.1 5e-21 75.5 0.1 1.3 1 0 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.22 gi|218884237|ref|YP_002428619.1| - 8.7e-28 97.2 0.1 1.1e-27 96.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e Prenyltransf PF01255.19 gi|218884238|ref|YP_002428620.1| - 1.4e-74 250.4 0.0 1.6e-74 250.2 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF3584 PF12128.8 gi|218884239|ref|YP_002428621.1| - 1.4e-07 29.5 38.5 1.8e-07 29.2 38.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF948 PF06103.11 gi|218884239|ref|YP_002428621.1| - 3.3e-06 27.3 15.0 4.9e-05 23.5 2.7 4.1 2 2 2 4 4 4 1 Bacterial protein of unknown function (DUF948) EzrA PF06160.12 gi|218884239|ref|YP_002428621.1| - 1.6e-05 23.3 42.2 0.00067 18.0 16.4 2.2 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA HOOK PF05622.12 gi|218884239|ref|YP_002428621.1| - 0.00012 20.4 46.5 0.00016 20.0 46.5 1.1 1 0 0 1 1 1 1 HOOK protein BRE1 PF08647.11 gi|218884239|ref|YP_002428621.1| - 0.00017 21.6 10.7 0.00017 21.6 10.7 4.6 2 2 3 5 5 4 1 BRE1 E3 ubiquitin ligase Baculo_PEP_C PF04513.12 gi|218884239|ref|YP_002428621.1| - 0.00024 21.2 17.8 0.0016 18.5 7.0 3.0 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Fez1 PF06818.15 gi|218884239|ref|YP_002428621.1| - 0.00029 21.3 11.3 0.00029 21.3 11.3 3.0 1 1 1 2 2 1 1 Fez1 Atg14 PF10186.9 gi|218884239|ref|YP_002428621.1| - 0.00032 19.9 10.1 0.00032 19.9 10.1 3.8 1 1 3 4 4 3 2 Vacuolar sorting 38 and autophagy-related subunit 14 CENP-F_leu_zip PF10473.9 gi|218884239|ref|YP_002428621.1| - 0.00038 20.5 59.4 0.021 14.9 13.0 4.3 1 1 3 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.6 gi|218884239|ref|YP_002428621.1| - 0.00059 19.2 54.2 0.1 11.9 10.2 3.4 1 1 2 3 3 3 3 Growth-arrest specific micro-tubule binding LPP PF04728.13 gi|218884239|ref|YP_002428621.1| - 0.00096 19.5 15.1 0.17 12.3 0.6 5.2 3 1 2 5 5 5 1 Lipoprotein leucine-zipper DUF4763 PF15960.5 gi|218884239|ref|YP_002428621.1| - 0.0014 18.0 2.7 0.0014 18.0 2.7 3.4 1 1 1 3 3 3 1 Domain of unknown function (DUF4763) Occludin_ELL PF07303.13 gi|218884239|ref|YP_002428621.1| - 0.002 18.8 4.1 0.002 18.8 4.1 3.9 1 1 3 4 4 4 1 Occludin homology domain Med4 PF10018.9 gi|218884239|ref|YP_002428621.1| - 0.0032 17.2 3.7 0.0032 17.2 3.7 3.8 2 2 1 3 3 2 1 Vitamin-D-receptor interacting Mediator subunit 4 WXG100 PF06013.12 gi|218884239|ref|YP_002428621.1| - 0.0056 16.9 5.4 0.11 12.7 0.4 3.8 2 2 0 2 2 2 1 Proteins of 100 residues with WXG TPR_MLP1_2 PF07926.12 gi|218884239|ref|YP_002428621.1| - 0.0064 16.5 43.6 0.081 13.0 2.8 4.2 1 1 3 4 4 4 1 TPR/MLP1/MLP2-like protein Spc7 PF08317.11 gi|218884239|ref|YP_002428621.1| - 0.0068 15.3 51.6 0.017 14.0 17.0 3.4 1 1 3 4 4 4 2 Spc7 kinetochore protein Spectrin PF00435.21 gi|218884239|ref|YP_002428621.1| - 0.01 16.3 28.5 0.16 12.5 2.7 3.8 2 1 1 3 3 3 0 Spectrin repeat Seryl_tRNA_N PF02403.22 gi|218884239|ref|YP_002428621.1| - 0.011 16.0 49.6 0.3 11.3 11.2 5.0 2 2 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Laminin_II PF06009.12 gi|218884239|ref|YP_002428621.1| - 0.014 15.4 9.0 0.014 15.4 9.0 3.5 1 1 3 4 4 2 0 Laminin Domain II Cep57_CLD_2 PF14197.6 gi|218884239|ref|YP_002428621.1| - 0.016 15.2 1.2 0.016 15.2 1.2 6.1 2 1 3 6 6 6 0 Centrosome localisation domain of PPC89 ALIX_LYPXL_bnd PF13949.6 gi|218884239|ref|YP_002428621.1| - 0.018 14.3 39.9 0.85 8.9 8.7 3.1 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV Filament PF00038.21 gi|218884239|ref|YP_002428621.1| - 0.021 14.4 46.7 0.03 13.9 18.2 2.8 1 1 2 3 3 2 0 Intermediate filament protein NPV_P10 PF05531.12 gi|218884239|ref|YP_002428621.1| - 0.021 15.3 20.6 1.9 9.0 6.3 4.4 1 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Alanine_zipper PF11839.8 gi|218884239|ref|YP_002428621.1| - 0.025 14.9 1.4 6.9 7.1 0.0 3.6 3 0 0 3 3 3 0 Alanine-zipper, major outer membrane lipoprotein IFT57 PF10498.9 gi|218884239|ref|YP_002428621.1| - 0.029 13.3 41.1 0.0091 15.0 20.3 2.3 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 APG6_N PF17675.1 gi|218884239|ref|YP_002428621.1| - 0.03 14.9 50.6 0.77 10.3 18.7 3.8 1 1 2 3 3 3 0 Apg6 coiled-coil region MbeD_MobD PF04899.12 gi|218884239|ref|YP_002428621.1| - 0.03 14.4 8.5 0.55 10.4 0.2 4.0 3 1 1 4 4 4 0 MbeD/MobD like TMF_TATA_bd PF12325.8 gi|218884239|ref|YP_002428621.1| - 0.039 14.2 1.9 0.039 14.2 1.9 4.6 1 1 4 5 5 5 0 TATA element modulatory factor 1 TATA binding Sec34 PF04136.15 gi|218884239|ref|YP_002428621.1| - 0.047 13.6 26.2 0.21 11.5 4.8 4.2 1 1 3 4 4 4 0 Sec34-like family COG6 PF06419.11 gi|218884239|ref|YP_002428621.1| - 0.074 11.3 34.6 0.013 13.8 6.6 3.1 1 1 1 3 3 3 0 Conserved oligomeric complex COG6 DUF4407 PF14362.6 gi|218884239|ref|YP_002428621.1| - 0.083 12.2 25.8 1.1 8.6 6.3 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF5082 PF16888.5 gi|218884239|ref|YP_002428621.1| - 0.086 13.1 44.9 0.24 11.7 2.2 5.5 1 1 4 6 6 6 0 Domain of unknown function (DUF5082) Snapin_Pallidin PF14712.6 gi|218884239|ref|YP_002428621.1| - 0.089 13.2 37.9 0.11 12.9 8.2 4.0 1 1 2 4 4 4 0 Snapin/Pallidin HAP1_N PF04849.13 gi|218884239|ref|YP_002428621.1| - 0.089 12.0 46.3 0.74 9.0 13.8 2.6 1 1 1 2 2 2 0 HAP1 N-terminal conserved region DUF4201 PF13870.6 gi|218884239|ref|YP_002428621.1| - 0.11 12.3 56.8 1.1 9.0 11.9 3.4 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) AAA_13 PF13166.6 gi|218884239|ref|YP_002428621.1| - 0.15 10.6 40.2 0.8 8.3 24.3 2.2 1 1 1 2 2 2 0 AAA domain DUF1664 PF07889.12 gi|218884239|ref|YP_002428621.1| - 0.17 11.9 30.1 0.037 14.1 6.2 4.3 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) kleA_kleC PF17383.2 gi|218884239|ref|YP_002428621.1| - 0.3 11.4 0.2 0.3 11.4 0.2 5.3 2 2 2 5 5 5 0 Uncharacterized KorC regulated protein A Laminin_I PF06008.14 gi|218884239|ref|YP_002428621.1| - 0.32 10.6 41.0 0.044 13.5 6.5 3.4 1 1 3 4 4 4 0 Laminin Domain I ATG16 PF08614.11 gi|218884239|ref|YP_002428621.1| - 0.39 10.9 46.8 0.11 12.7 15.2 3.5 1 1 1 2 2 1 0 Autophagy protein 16 (ATG16) FPP PF05911.11 gi|218884239|ref|YP_002428621.1| - 0.44 8.7 45.4 0.17 10.0 16.1 3.5 1 1 2 3 3 3 0 Filament-like plant protein, long coiled-coil UPF0242 PF06785.11 gi|218884239|ref|YP_002428621.1| - 0.48 10.5 49.3 2.9 8.0 21.5 3.2 1 1 1 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus FlaC_arch PF05377.11 gi|218884239|ref|YP_002428621.1| - 0.59 10.6 34.8 0.72 10.3 2.6 5.8 3 3 4 7 7 6 0 Flagella accessory protein C (FlaC) T3SSipB PF16535.5 gi|218884239|ref|YP_002428621.1| - 0.68 10.4 14.5 0.15 12.6 3.1 3.1 1 1 2 3 3 3 0 Type III cell invasion protein SipB TMPIT PF07851.13 gi|218884239|ref|YP_002428621.1| - 0.7 9.1 34.7 0.048 12.9 6.7 3.0 1 1 2 3 3 3 0 TMPIT-like protein DUF745 PF05335.13 gi|218884239|ref|YP_002428621.1| - 0.87 9.3 28.8 3 7.5 1.3 3.2 1 1 1 3 3 3 0 Protein of unknown function (DUF745) PI_PP_I PF18363.1 gi|218884239|ref|YP_002428621.1| - 0.93 9.7 14.2 0.99 9.6 2.3 4.0 1 1 3 4 4 4 0 Phosphoinositide phosphatase insertion domain FUSC PF04632.12 gi|218884239|ref|YP_002428621.1| - 1 7.8 4.0 5.1 5.5 0.0 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family Golgin_A5 PF09787.9 gi|218884239|ref|YP_002428621.1| - 1.1 8.7 49.6 3.9 6.8 21.9 3.2 1 1 0 2 2 2 0 Golgin subfamily A member 5 ADIP PF11559.8 gi|218884239|ref|YP_002428621.1| - 1.1 9.3 45.3 1.6 8.8 7.8 3.8 1 1 3 4 4 3 0 Afadin- and alpha -actinin-Binding SHE3 PF17078.5 gi|218884239|ref|YP_002428621.1| - 1.6 8.4 41.5 5.2 6.7 10.1 2.7 1 1 2 3 3 3 0 SWI5-dependent HO expression protein 3 Med9 PF07544.13 gi|218884239|ref|YP_002428621.1| - 1.8 8.7 42.5 4.2 7.5 2.6 5.0 2 2 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 MtrG PF04210.13 gi|218884239|ref|YP_002428621.1| - 1.9 8.4 5.5 1.5 8.7 0.2 3.5 3 1 1 4 4 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G KASH_CCD PF14662.6 gi|218884239|ref|YP_002428621.1| - 2 8.2 56.7 0.068 13.0 13.9 3.6 1 1 2 3 3 2 0 Coiled-coil region of CCDC155 or KASH FapA PF03961.13 gi|218884239|ref|YP_002428621.1| - 2 6.9 48.3 0.049 12.2 13.3 2.8 1 1 2 3 3 3 0 Flagellar Assembly Protein A Taxilin PF09728.9 gi|218884239|ref|YP_002428621.1| - 2.2 7.4 50.3 3.2 6.9 50.3 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein HemX PF04375.14 gi|218884239|ref|YP_002428621.1| - 2.4 7.4 26.8 0.18 11.1 4.9 3.2 1 1 1 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase CENP-H PF05837.12 gi|218884239|ref|YP_002428621.1| - 2.6 8.5 49.3 0.14 12.6 8.8 4.2 1 1 2 3 3 2 0 Centromere protein H (CENP-H) DUF4298 PF14131.6 gi|218884239|ref|YP_002428621.1| - 2.9 7.9 23.0 3.6 7.6 0.5 5.1 2 2 3 5 5 5 0 Domain of unknown function (DUF4298) Abi_C PF14355.6 gi|218884239|ref|YP_002428621.1| - 3.1 8.0 12.5 0.53 10.4 0.5 4.2 3 2 2 6 6 4 0 Abortive infection C-terminus Allexi_40kDa PF05549.11 gi|218884239|ref|YP_002428621.1| - 3.3 7.2 23.0 0.082 12.4 3.4 3.1 1 1 3 4 4 4 0 Allexivirus 40kDa protein AIP3 PF03915.13 gi|218884239|ref|YP_002428621.1| - 3.5 6.6 35.8 1 8.4 12.3 2.3 1 1 1 2 2 2 0 Actin interacting protein 3 Syntaxin_2 PF14523.6 gi|218884239|ref|YP_002428621.1| - 3.5 8.0 35.9 2.5 8.5 8.5 4.1 2 2 1 3 3 3 0 Syntaxin-like protein DASH_Dam1 PF08653.10 gi|218884239|ref|YP_002428621.1| - 3.6 7.5 5.7 16 5.4 0.4 4.0 2 2 1 4 4 4 0 DASH complex subunit Dam1 ERM PF00769.19 gi|218884239|ref|YP_002428621.1| - 4 7.2 49.1 0.96 9.2 17.0 2.3 1 1 0 2 2 2 0 Ezrin/radixin/moesin family FlgN PF05130.12 gi|218884239|ref|YP_002428621.1| - 5.8 7.4 41.4 0.46 11.0 10.6 3.4 1 1 1 3 3 3 0 FlgN protein Mod_r PF07200.13 gi|218884239|ref|YP_002428621.1| - 6 7.0 45.1 0.16 12.1 10.3 3.8 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein YabA PF06156.13 gi|218884239|ref|YP_002428621.1| - 6.1 7.5 46.1 0.63 10.7 0.5 5.1 1 1 2 4 4 3 0 Initiation control protein YabA COG2 PF06148.11 gi|218884239|ref|YP_002428621.1| - 6.2 6.9 41.6 2 8.5 6.6 4.9 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 BST2 PF16716.5 gi|218884239|ref|YP_002428621.1| - 6.9 7.3 38.2 17 6.1 9.2 5.2 1 1 4 5 5 5 0 Bone marrow stromal antigen 2 MCPsignal PF00015.21 gi|218884239|ref|YP_002428621.1| - 7.3 6.4 18.6 1 9.1 0.9 3.2 1 1 0 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Prefoldin PF02996.17 gi|218884239|ref|YP_002428621.1| - 7.7 6.5 40.3 0.84 9.6 2.1 5.9 2 2 2 5 5 5 0 Prefoldin subunit DUF2408 PF10303.9 gi|218884239|ref|YP_002428621.1| - 8.4 7.0 32.4 2.4 8.7 13.2 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) DUF812 PF05667.11 gi|218884239|ref|YP_002428621.1| - 8.5 5.1 54.9 6.9 5.4 22.5 3.2 1 1 1 2 2 1 0 Protein of unknown function (DUF812) DUF3450 PF11932.8 gi|218884239|ref|YP_002428621.1| - 9 5.5 37.1 0.56 9.5 5.7 3.8 1 1 4 5 5 5 0 Protein of unknown function (DUF3450) DUF4140 PF13600.6 gi|218884239|ref|YP_002428621.1| - 9.9 6.7 32.3 1.4 9.4 1.0 5.1 1 1 3 4 4 4 0 N-terminal domain of unknown function (DUF4140) ATP-grasp_5 PF13549.6 gi|218884240|ref|YP_002428622.1| - 4.1e-80 268.4 0.2 4.6e-80 268.2 0.2 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|218884240|ref|YP_002428622.1| - 4.1e-06 26.5 0.2 7.2e-06 25.7 0.2 1.6 1 1 0 1 1 1 1 ATP-grasp domain EBV-NA1 PF02905.14 gi|218884240|ref|YP_002428622.1| - 0.12 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Epstein Barr virus nuclear antigen-1, DNA-binding domain Succ_CoA_lig PF13607.6 gi|218884241|ref|YP_002428623.1| - 3.3e-52 175.9 1.3 5.2e-51 172.1 0.3 2.8 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|218884241|ref|YP_002428623.1| - 1.1e-28 100.1 0.1 9.8e-28 97.0 0.0 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|218884241|ref|YP_002428623.1| - 2.1e-14 53.9 0.0 5.9e-14 52.5 0.0 1.8 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|218884241|ref|YP_002428623.1| - 0.026 15.3 0.0 1.9 9.3 0.0 2.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Ferrochelatase PF00762.19 gi|218884241|ref|YP_002428623.1| - 0.031 13.4 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 Ferrochelatase F420_oxidored PF03807.17 gi|218884241|ref|YP_002428623.1| - 0.063 13.9 0.1 5.3 7.7 0.0 3.3 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Chromate_transp PF02417.15 gi|218884242|ref|YP_002428624.1| - 3.3e-42 144.3 16.7 3.9e-42 144.1 16.7 1.0 1 0 0 1 1 1 1 Chromate transporter NTPase_P4 PF11602.8 gi|218884242|ref|YP_002428624.1| - 0.098 11.8 0.2 0.13 11.4 0.2 1.1 1 0 0 1 1 1 0 ATPase P4 of dsRNA bacteriophage phi-12 CdvA PF18822.1 gi|218884243|ref|YP_002428625.1| - 2.1e-37 127.7 9.8 2.8e-37 127.3 9.8 1.2 1 0 0 1 1 1 1 CdvA-like coiled-coil domain BLOC1_2 PF10046.9 gi|218884243|ref|YP_002428625.1| - 0.00041 20.6 10.0 0.0071 16.6 4.2 2.8 4 0 0 4 4 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Golgin_A5 PF09787.9 gi|218884243|ref|YP_002428625.1| - 0.00066 19.2 3.8 0.00076 19.0 3.8 1.1 1 0 0 1 1 1 1 Golgin subfamily A member 5 PIN_8 PF18476.1 gi|218884243|ref|YP_002428625.1| - 0.0041 17.0 3.2 0.0055 16.6 3.2 1.1 1 0 0 1 1 1 1 PIN like domain Fmp27_WPPW PF10359.9 gi|218884243|ref|YP_002428625.1| - 0.0047 15.8 5.5 0.0057 15.6 3.9 1.7 1 1 1 2 2 2 1 RNA pol II promoter Fmp27 protein domain PRC PF05239.16 gi|218884243|ref|YP_002428625.1| - 0.0055 16.7 0.7 0.019 15.0 0.2 1.9 2 0 0 2 2 2 1 PRC-barrel domain T2SSF PF00482.23 gi|218884243|ref|YP_002428625.1| - 0.0064 16.4 0.1 0.012 15.5 0.1 1.4 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F DapH_N PF08503.10 gi|218884243|ref|YP_002428625.1| - 0.013 15.7 2.1 3.4 8.0 0.6 3.0 1 1 2 3 3 3 0 Tetrahydrodipicolinate succinyltransferase N-terminal Syntaxin-6_N PF09177.11 gi|218884243|ref|YP_002428625.1| - 0.014 15.9 4.1 0.043 14.4 4.0 1.9 1 1 0 1 1 1 0 Syntaxin 6, N-terminal ISG65-75 PF11727.8 gi|218884243|ref|YP_002428625.1| - 0.014 14.6 4.5 0.039 13.2 2.2 2.0 2 0 0 2 2 2 0 Invariant surface glycoprotein Pex19 PF04614.12 gi|218884243|ref|YP_002428625.1| - 0.026 14.3 0.2 0.032 14.0 0.2 1.2 1 0 0 1 1 1 0 Pex19 protein family Exonuc_VII_L PF02601.15 gi|218884243|ref|YP_002428625.1| - 0.027 14.0 1.1 0.036 13.6 1.1 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit UvrC_HhH_N PF08459.11 gi|218884243|ref|YP_002428625.1| - 0.038 13.9 3.1 2.1 8.2 1.4 2.3 1 1 1 2 2 2 0 UvrC Helix-hairpin-helix N-terminal Baculo_PEP_C PF04513.12 gi|218884243|ref|YP_002428625.1| - 0.038 14.0 0.1 0.12 12.4 0.0 1.8 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2721 PF11026.8 gi|218884243|ref|YP_002428625.1| - 0.054 13.4 0.1 0.094 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) FliT PF05400.13 gi|218884243|ref|YP_002428625.1| - 0.14 12.9 3.5 0.28 12.0 1.1 2.1 2 0 0 2 2 2 0 Flagellar protein FliT DNA_primase_lrg PF04104.14 gi|218884243|ref|YP_002428625.1| - 0.17 11.2 1.3 0.23 10.8 1.3 1.3 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit MerR-DNA-bind PF09278.11 gi|218884243|ref|YP_002428625.1| - 0.21 12.2 3.4 11 6.6 0.1 3.1 4 0 0 4 4 3 0 MerR, DNA binding Fib_alpha PF08702.10 gi|218884243|ref|YP_002428625.1| - 0.39 10.9 6.4 0.42 10.8 3.4 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.12 gi|218884243|ref|YP_002428625.1| - 0.41 11.1 3.4 4.1 7.9 0.4 3.0 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Uso1_p115_C PF04871.13 gi|218884243|ref|YP_002428625.1| - 0.76 10.2 8.3 0.24 11.8 5.1 1.7 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF883 PF05957.13 gi|218884243|ref|YP_002428625.1| - 0.95 10.1 4.4 0.41 11.3 1.8 1.7 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF883) PDE4_UCR PF18100.1 gi|218884243|ref|YP_002428625.1| - 1.4 9.5 4.3 1.1 9.9 1.2 2.0 2 1 0 2 2 2 0 Phosphodiesterase 4 upstream conserved regions (UCR) TMPIT PF07851.13 gi|218884243|ref|YP_002428625.1| - 4.8 6.3 5.8 7.8 5.6 5.7 1.4 1 1 0 1 1 1 0 TMPIT-like protein PmbA_TldD PF01523.16 gi|218884244|ref|YP_002428626.1| - 6.6e-46 157.4 0.0 2.5e-45 155.5 0.0 1.7 2 0 0 2 2 2 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|218884245|ref|YP_002428627.1| - 3.1e-45 155.2 0.0 4.9e-45 154.5 0.0 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF3096 PF11295.8 gi|218884246|ref|YP_002428628.1| - 9.9e-06 25.1 8.9 9.9e-06 25.1 8.9 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3096) DUF308 PF03729.13 gi|218884246|ref|YP_002428628.1| - 0.018 15.4 8.8 0.05 13.9 8.5 1.7 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) Neurensin PF14927.6 gi|218884246|ref|YP_002428628.1| - 0.097 12.4 0.3 0.095 12.4 0.3 1.2 1 0 0 1 1 1 0 Neurensin DUF872 PF05915.12 gi|218884246|ref|YP_002428628.1| - 0.15 12.2 1.0 0.16 12.2 1.0 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) SLATT_6 PF18169.1 gi|218884246|ref|YP_002428628.1| - 0.21 11.2 1.9 0.23 11.0 1.9 1.1 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 DUF2892 PF11127.8 gi|218884246|ref|YP_002428628.1| - 0.37 10.9 3.2 0.54 10.3 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) PhoU PF01895.19 gi|218884247|ref|YP_002428629.1| - 2e-24 85.8 14.5 2.5e-19 69.5 7.6 2.3 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|218884247|ref|YP_002428629.1| - 3.5e-10 39.6 0.0 7.6e-10 38.5 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin RRM_3 PF08777.11 gi|218884247|ref|YP_002428629.1| - 0.17 12.0 0.1 1.5 8.9 0.0 2.2 2 0 0 2 2 2 0 RNA binding motif ParBc PF02195.18 gi|218884248|ref|YP_002428630.1| - 7.3e-07 29.4 0.0 0.0031 17.8 0.0 2.4 2 0 0 2 2 2 2 ParB-like nuclease domain ParBc_2 PF08857.11 gi|218884248|ref|YP_002428630.1| - 2e-06 28.0 0.3 0.026 14.6 0.1 2.6 2 1 0 2 2 2 2 Putative ParB-like nuclease DUF2897 PF11446.8 gi|218884249|ref|YP_002428631.1| - 4.3 7.3 8.6 4.7 7.2 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2897) DUF134 PF02001.16 gi|218884250|ref|YP_002428632.1| - 1.2e-12 48.2 0.0 1.5e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 HTH_23 PF13384.6 gi|218884250|ref|YP_002428632.1| - 2.1e-05 24.1 0.2 5.4e-05 22.9 0.2 1.6 1 1 1 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|218884250|ref|YP_002428632.1| - 5.4e-05 22.8 0.1 7.5e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|218884250|ref|YP_002428632.1| - 0.00012 22.0 0.2 0.00014 21.8 0.2 1.1 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 gi|218884250|ref|YP_002428632.1| - 0.00085 18.8 0.1 0.0011 18.5 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 DUF1492 PF07374.11 gi|218884250|ref|YP_002428632.1| - 0.0095 16.1 0.0 0.012 15.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1492) HTH_29 PF13551.6 gi|218884250|ref|YP_002428632.1| - 0.013 15.5 0.1 0.018 15.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_10 PF04967.12 gi|218884250|ref|YP_002428632.1| - 0.015 15.0 0.1 0.036 13.9 0.1 1.7 1 1 0 1 1 1 0 HTH DNA binding domain HTH_1 PF00126.27 gi|218884250|ref|YP_002428632.1| - 0.035 14.0 0.1 0.043 13.8 0.1 1.1 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.6 gi|218884250|ref|YP_002428632.1| - 0.077 13.4 0.3 0.11 12.8 0.3 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|218884250|ref|YP_002428632.1| - 0.11 11.9 0.1 0.17 11.3 0.1 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF5320 PF17253.2 gi|218884252|ref|YP_002428634.1| - 0.0016 19.5 0.0 0.0016 19.5 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5320) DUF357 PF04010.13 gi|218884252|ref|YP_002428634.1| - 0.051 13.7 0.1 0.052 13.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF357) DS PF01916.17 gi|218884255|ref|YP_002428637.1| - 3.6e-90 302.1 0.0 4e-90 302.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase FRB_dom PF08771.11 gi|218884255|ref|YP_002428637.1| - 0.085 13.3 0.1 0.21 12.0 0.1 1.6 1 0 0 1 1 1 0 FKBP12-rapamycin binding domain NADHdh PF00146.21 gi|218884256|ref|YP_002428638.1| - 1.5e-64 218.2 18.2 1.9e-64 217.9 18.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF996 PF06195.13 gi|218884257|ref|YP_002428639.1| - 0.066 13.5 6.2 0.093 13.0 6.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF996) MDM31_MDM32 PF08118.11 gi|218884257|ref|YP_002428639.1| - 0.14 10.8 0.5 0.16 10.6 0.5 1.1 1 0 0 1 1 1 0 Yeast mitochondrial distribution and morphology (MDM) proteins IMPDH PF00478.25 gi|218884257|ref|YP_002428639.1| - 0.17 10.9 0.0 0.21 10.6 0.0 1.0 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain MNHE PF01899.16 gi|218884258|ref|YP_002428640.1| - 1.1e-35 122.6 3.3 1.2e-35 122.4 3.3 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q2 PF00420.24 gi|218884259|ref|YP_002428641.1| - 1.5e-17 63.2 1.7 1.9e-17 62.8 1.7 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MnhB PF04039.13 gi|218884260|ref|YP_002428642.1| - 1.7e-16 60.6 13.9 1.7e-16 60.6 13.9 2.4 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|218884260|ref|YP_002428642.1| - 0.0012 18.4 0.6 0.0012 18.4 0.6 2.3 2 1 0 2 2 2 1 Predicted membrane protein (DUF2106) DUF4040 PF13244.6 gi|218884261|ref|YP_002428643.1| - 8.6e-14 51.4 4.5 8.6e-14 51.4 4.5 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Proton_antipo_M PF00361.20 gi|218884261|ref|YP_002428643.1| - 0.0013 18.1 2.1 0.0013 18.0 2.1 1.0 1 0 0 1 1 1 1 Proton-conducting membrane transporter EamA PF00892.20 gi|218884261|ref|YP_002428643.1| - 0.13 12.4 9.3 0.21 11.7 9.3 1.4 1 1 0 1 1 1 0 EamA-like transporter family DUF2070 PF09843.9 gi|218884261|ref|YP_002428643.1| - 3.9 5.6 8.6 4.2 5.5 8.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) PhaG_MnhG_YufB PF03334.14 gi|218884262|ref|YP_002428644.1| - 2.5e-17 62.9 8.2 3.2e-17 62.5 8.2 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|218884263|ref|YP_002428645.1| - 1.5e-09 38.1 10.3 1.5e-09 38.1 10.3 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MASE5 PF17178.4 gi|218884263|ref|YP_002428645.1| - 0.92 9.3 9.8 2.2 8.1 9.8 1.7 1 1 0 1 1 1 0 Membrane-associated sensor Fer4 PF00037.27 gi|218884264|ref|YP_002428646.1| - 2e-17 62.2 6.7 3.9e-09 36.0 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|218884264|ref|YP_002428646.1| - 5.8e-12 46.0 9.3 1.4e-11 44.8 9.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|218884264|ref|YP_002428646.1| - 1.6e-11 44.1 7.4 2.4e-11 43.6 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|218884264|ref|YP_002428646.1| - 5.1e-10 39.4 7.9 7.4e-10 38.8 7.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|218884264|ref|YP_002428646.1| - 1.9e-09 37.5 6.0 6.3e-05 23.0 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218884264|ref|YP_002428646.1| - 9e-09 35.0 10.2 0.00018 21.4 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|218884264|ref|YP_002428646.1| - 2e-08 35.1 9.2 0.002 19.0 3.5 2.3 1 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|218884264|ref|YP_002428646.1| - 1.5e-07 31.1 9.4 7.7e-05 22.6 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|218884264|ref|YP_002428646.1| - 5.3e-06 27.0 18.4 0.0012 19.7 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|218884264|ref|YP_002428646.1| - 1.8e-05 25.2 10.9 0.00041 20.8 11.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|218884264|ref|YP_002428646.1| - 2e-05 24.9 12.2 0.00037 20.9 12.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|218884264|ref|YP_002428646.1| - 6.2e-05 23.7 5.3 0.038 14.7 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|218884264|ref|YP_002428646.1| - 0.00026 21.3 8.8 0.053 14.0 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|218884264|ref|YP_002428646.1| - 0.00031 21.5 3.0 0.078 13.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|218884264|ref|YP_002428646.1| - 0.0011 19.5 6.9 0.14 12.7 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|218884264|ref|YP_002428646.1| - 0.0019 18.4 3.5 0.38 11.0 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain DUF3079 PF11278.8 gi|218884264|ref|YP_002428646.1| - 1.9 8.4 6.5 1.7 8.5 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3079) Complex1_49kDa PF00346.19 gi|218884265|ref|YP_002428647.1| - 2.2e-67 227.0 0.0 2.4e-52 177.7 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|218884265|ref|YP_002428647.1| - 3.3e-05 23.0 0.0 0.00012 21.1 0.0 1.8 2 0 0 2 2 2 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|218884266|ref|YP_002428648.1| - 3.6e-26 92.2 0.0 5.6e-26 91.6 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|218884266|ref|YP_002428648.1| - 3e-09 36.8 0.0 5.1e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF35_N PF12172.8 gi|218884266|ref|YP_002428648.1| - 0.053 13.4 0.4 0.18 11.7 0.1 1.9 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Proton_antipo_M PF00361.20 gi|218884267|ref|YP_002428649.1| - 1.4e-29 103.2 25.0 1.4e-29 103.2 25.0 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|218884267|ref|YP_002428649.1| - 9.3e-08 31.7 8.5 9.3e-08 31.7 8.5 2.0 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Peptidase_M20 PF01546.28 gi|218884268|ref|YP_002428650.1| - 2.2e-37 128.8 0.0 2.7e-37 128.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|218884268|ref|YP_002428650.1| - 3.3e-16 59.1 0.0 1.9e-15 56.7 0.0 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|218884268|ref|YP_002428650.1| - 2e-06 27.7 0.0 2.8e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M32 PF02074.15 gi|218884269|ref|YP_002428651.1| - 3.5e-162 540.6 0.0 4e-162 540.4 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase LAGLIDADG_1 PF00961.19 gi|218884269|ref|YP_002428651.1| - 0.18 12.7 0.4 0.74 10.8 0.0 2.1 3 0 0 3 3 3 0 LAGLIDADG endonuclease HTH_17 PF12728.7 gi|218884271|ref|YP_002428653.1| - 5.4e-14 52.1 0.6 1e-13 51.2 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Resolvase PF00239.21 gi|218884271|ref|YP_002428653.1| - 0.00015 21.9 0.1 0.0002 21.5 0.1 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain CbiG_mid PF11761.8 gi|218884271|ref|YP_002428653.1| - 0.017 15.2 0.2 0.026 14.6 0.2 1.2 1 0 0 1 1 1 0 Cobalamin biosynthesis central region YdaS_antitoxin PF15943.5 gi|218884271|ref|YP_002428653.1| - 0.024 14.5 0.1 0.079 12.8 0.0 2.1 1 1 1 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MerR PF00376.23 gi|218884271|ref|YP_002428653.1| - 0.026 14.3 0.6 0.22 11.4 0.0 2.2 2 0 0 2 2 2 0 MerR family regulatory protein HTH_11 PF08279.12 gi|218884271|ref|YP_002428653.1| - 0.07 13.1 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 HTH domain Bac_chlorC PF02043.17 gi|218884271|ref|YP_002428653.1| - 0.14 12.2 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacteriochlorophyll C binding protein MerR_2 PF13591.6 gi|218884271|ref|YP_002428653.1| - 0.16 11.9 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|218884271|ref|YP_002428653.1| - 0.16 11.8 2.9 0.3 10.9 0.1 2.5 2 1 1 3 3 3 0 Homeodomain-like domain SNase PF00565.17 gi|218884272|ref|YP_002428654.1| - 6e-07 29.9 0.0 1.7e-06 28.5 0.0 1.8 1 0 0 1 1 1 1 Staphylococcal nuclease homologue SKG6 PF08693.10 gi|218884272|ref|YP_002428654.1| - 0.041 13.3 0.1 0.18 11.2 0.1 2.2 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Ribosomal_S25 PF03297.15 gi|218884273|ref|YP_002428655.1| - 4.4e-11 42.9 0.1 5.2e-11 42.7 0.1 1.1 1 0 0 1 1 1 1 S25 ribosomal protein EAP30 PF04157.16 gi|218884273|ref|YP_002428655.1| - 0.011 15.0 0.0 0.012 14.9 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family Fe_dep_repress PF01325.19 gi|218884273|ref|YP_002428655.1| - 0.061 13.5 0.1 0.089 13.0 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|218884273|ref|YP_002428655.1| - 0.098 12.2 0.6 0.23 11.1 0.4 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Ribosomal_S21 PF01165.20 gi|218884273|ref|YP_002428655.1| - 0.14 11.9 1.0 0.33 10.7 0.1 2.2 2 1 0 2 2 2 0 Ribosomal protein S21 DUF998 PF06197.13 gi|218884274|ref|YP_002428656.1| - 2.9e-10 40.1 14.2 3.3e-10 39.8 14.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF4149 PF13664.6 gi|218884274|ref|YP_002428656.1| - 0.36 11.2 9.8 1.5 9.2 0.2 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4149) DUF2107 PF09880.9 gi|218884274|ref|YP_002428656.1| - 0.55 10.4 7.0 0.11 12.6 2.2 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2107) YpmT PF17431.2 gi|218884274|ref|YP_002428656.1| - 0.77 9.8 9.5 14 5.8 5.5 2.7 1 1 1 2 2 2 0 Uncharacterized YmpT-like HKR_ArcB_TM PF18415.1 gi|218884274|ref|YP_002428656.1| - 1.7 9.5 8.5 2.1 9.2 6.6 2.1 1 1 0 1 1 1 0 Histidine kinase receptor ArcB trans-membrane domain DUF1772 PF08592.11 gi|218884274|ref|YP_002428656.1| - 8.4 6.7 10.0 4.1 7.7 3.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) ABC2_membrane PF01061.24 gi|218884275|ref|YP_002428657.1| - 7.2e-18 64.8 22.2 7.2e-18 64.8 22.2 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|218884275|ref|YP_002428657.1| - 3.5e-07 29.8 15.5 6.2e-07 29.0 15.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|218884276|ref|YP_002428658.1| - 0.001 18.3 33.2 0.0013 18.0 33.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|218884276|ref|YP_002428658.1| - 0.002 18.1 14.0 0.002 18.1 14.0 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|218884276|ref|YP_002428658.1| - 0.075 12.3 15.1 0.018 14.4 11.6 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|218884277|ref|YP_002428659.1| - 4.3e-28 98.5 0.0 2e-27 96.4 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|218884277|ref|YP_002428659.1| - 1.2e-07 31.9 0.0 0.014 15.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|218884277|ref|YP_002428659.1| - 1.3e-07 32.2 0.4 3.6e-07 30.8 0.4 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) KdpD PF02702.17 gi|218884277|ref|YP_002428659.1| - 5.1e-05 22.8 0.6 0.00073 19.1 0.2 2.6 2 1 1 3 3 3 1 Osmosensitive K+ channel His kinase sensor domain AAA PF00004.29 gi|218884277|ref|YP_002428659.1| - 0.0011 19.4 0.8 0.049 14.0 0.3 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|218884277|ref|YP_002428659.1| - 0.0026 18.3 0.6 0.0047 17.5 0.1 1.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|218884277|ref|YP_002428659.1| - 0.0027 16.9 0.1 0.022 13.9 0.1 2.0 1 1 0 1 1 1 1 NB-ARC domain SMC_N PF02463.19 gi|218884277|ref|YP_002428659.1| - 0.0041 16.6 1.1 2.9 7.2 0.0 2.6 2 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|218884277|ref|YP_002428659.1| - 0.017 14.8 0.1 0.061 12.9 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|218884277|ref|YP_002428659.1| - 0.031 14.0 0.1 0.067 12.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|218884277|ref|YP_002428659.1| - 0.045 13.5 0.1 0.1 12.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|218884277|ref|YP_002428659.1| - 0.093 12.7 0.1 0.56 10.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) MrpF_PhaF PF04066.13 gi|218884278|ref|YP_002428660.1| - 4.5e-11 43.0 4.9 4.5e-11 43.0 4.9 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.14 gi|218884279|ref|YP_002428661.1| - 1.7e-19 69.8 11.2 2.2e-19 69.5 11.2 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit FAM163 PF15069.6 gi|218884279|ref|YP_002428661.1| - 0.024 15.1 0.0 0.03 14.8 0.0 1.2 1 0 0 1 1 1 0 FAM163 family ExoD PF06055.12 gi|218884279|ref|YP_002428661.1| - 0.12 11.7 6.9 0.087 12.2 5.9 1.4 1 1 0 1 1 1 0 Exopolysaccharide synthesis, ExoD Virul_fac_BrkB PF03631.15 gi|218884279|ref|YP_002428661.1| - 0.18 11.4 9.5 0.23 11.1 9.5 1.1 1 0 0 1 1 1 0 Virulence factor BrkB DUF2583 PF10762.9 gi|218884279|ref|YP_002428661.1| - 2.4 8.6 4.0 1.2 9.6 1.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) DUF4040 PF13244.6 gi|218884280|ref|YP_002428662.1| - 4.4e-10 39.5 6.7 4.4e-10 39.5 6.7 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4040) DUF2070 PF09843.9 gi|218884280|ref|YP_002428662.1| - 0.38 9.0 11.6 0.38 9.0 11.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4305 PF14146.6 gi|218884280|ref|YP_002428662.1| - 1.6 9.0 10.9 5.2 7.3 0.6 3.6 3 1 1 4 4 4 0 Domain of unknown function (DUF4305) DUF3671 PF12420.8 gi|218884280|ref|YP_002428662.1| - 3 8.0 8.2 3.7 7.6 8.2 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF2107 PF09880.9 gi|218884280|ref|YP_002428662.1| - 9.7 6.4 11.4 0.25 11.5 1.9 2.0 1 1 0 2 2 2 0 Predicted membrane protein (DUF2107) MnhB PF04039.13 gi|218884281|ref|YP_002428663.1| - 1.4e-17 64.1 10.9 1.4e-17 64.1 10.9 2.3 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|218884281|ref|YP_002428663.1| - 0.032 13.8 0.2 0.11 12.1 0.2 1.9 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) Oxidored_q2 PF00420.24 gi|218884282|ref|YP_002428664.1| - 5.5e-19 67.7 4.3 6.6e-19 67.5 4.3 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MNHE PF01899.16 gi|218884283|ref|YP_002428665.1| - 1.1e-34 119.3 0.4 1.2e-34 119.1 0.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|218884284|ref|YP_002428666.1| - 4.8e-46 157.3 22.8 1.1e-45 156.1 22.8 1.7 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|218884284|ref|YP_002428666.1| - 0.00053 20.0 1.6 0.00053 20.0 1.6 3.5 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PAPS_reduct PF01507.19 gi|218884285|ref|YP_002428667.1| - 4.5e-32 111.5 0.0 6.3e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|218884285|ref|YP_002428667.1| - 0.002 17.3 0.1 0.0029 16.8 0.1 1.2 1 0 0 1 1 1 1 NAD synthase AFOR_C PF01314.18 gi|218884286|ref|YP_002428668.1| - 1.4e-111 373.2 0.0 1.7e-111 372.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|218884286|ref|YP_002428668.1| - 8.8e-75 250.9 0.1 1.4e-74 250.2 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain CTP-dep_RFKase PF01982.16 gi|218884287|ref|YP_002428669.1| - 1.2e-29 102.9 0.3 1.4e-29 102.7 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 MazE_antitoxin PF04014.18 gi|218884287|ref|YP_002428669.1| - 0.011 15.7 0.2 0.035 14.1 0.0 2.0 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin SporV_AA PF12164.8 gi|218884287|ref|YP_002428669.1| - 0.044 14.1 0.8 0.16 12.4 0.2 2.0 1 1 1 2 2 2 0 Stage V sporulation protein AA SAM_adeno_trans PF01887.16 gi|218884289|ref|YP_002428671.1| - 1.6e-83 279.8 0.0 2e-83 279.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Glyco_hydro_57 PF03065.15 gi|218884290|ref|YP_002428672.1| - 2.3e-79 266.9 0.2 3.4e-79 266.4 0.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glucodextran_C PF09985.9 gi|218884290|ref|YP_002428672.1| - 3.2e-74 249.2 0.5 6.9e-73 244.9 0.1 2.5 2 0 0 2 2 2 1 C-terminal binding-module, SLH-like, of glucodextranase RIFIN PF02009.16 gi|218884290|ref|YP_002428672.1| - 0.017 15.1 1.0 0.028 14.3 1.0 1.2 1 0 0 1 1 1 0 Rifin DUF4366 PF14283.6 gi|218884290|ref|YP_002428672.1| - 0.027 14.5 0.6 0.044 13.8 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) TMEM154 PF15102.6 gi|218884290|ref|YP_002428672.1| - 0.17 11.8 11.2 0.3 11.0 11.2 1.4 1 0 0 1 1 1 0 TMEM154 protein family MGC-24 PF05283.11 gi|218884290|ref|YP_002428672.1| - 0.28 11.6 17.9 0.031 14.7 13.6 1.6 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Presenilin PF01080.17 gi|218884290|ref|YP_002428672.1| - 0.45 9.2 7.3 0.74 8.5 7.3 1.2 1 0 0 1 1 1 0 Presenilin FSA_C PF10479.9 gi|218884290|ref|YP_002428672.1| - 2 6.4 12.0 3 5.9 12.0 1.1 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus Mucin PF01456.17 gi|218884290|ref|YP_002428672.1| - 3.4 7.6 48.6 6.6 6.7 48.6 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein MFS_1 PF07690.16 gi|218884291|ref|YP_002428673.1| - 3.7e-26 91.9 44.8 1.2e-16 60.6 15.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|218884291|ref|YP_002428673.1| - 3e-10 39.5 23.4 2e-06 27.0 11.4 2.2 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|218884291|ref|YP_002428673.1| - 1.6e-06 26.9 16.7 4.4e-05 22.1 16.4 2.0 1 1 0 1 1 1 1 Transmembrane secretion effector GPI2 PF06432.11 gi|218884291|ref|YP_002428673.1| - 0.00048 19.7 0.0 0.025 14.1 0.0 2.4 1 1 0 1 1 1 1 Phosphatidylinositol N-acetylglucosaminyltransferase MscL PF01741.18 gi|218884291|ref|YP_002428673.1| - 0.78 10.0 7.0 4.8 7.5 0.4 3.0 3 1 0 3 3 3 0 Large-conductance mechanosensitive channel, MscL PDDEXK_1 PF12705.7 gi|218884292|ref|YP_002428674.1| - 2.3e-07 31.0 1.9 0.00011 22.2 0.5 2.8 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.6 gi|218884292|ref|YP_002428674.1| - 5.2e-05 23.6 0.1 0.00011 22.6 0.1 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Tox-REase-9 PF15650.6 gi|218884292|ref|YP_002428674.1| - 0.0048 17.2 0.0 0.0094 16.2 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease fold toxin 9 DUF3799 PF12684.7 gi|218884292|ref|YP_002428674.1| - 0.024 14.4 0.1 1.8 8.3 0.0 2.2 1 1 1 2 2 2 0 PDDEXK-like domain of unknown function (DUF3799) CYTH PF01928.21 gi|218884293|ref|YP_002428675.1| - 3.7e-22 79.1 0.2 4.6e-22 78.8 0.2 1.1 1 0 0 1 1 1 1 CYTH domain Hist_deacetyl PF00850.19 gi|218884294|ref|YP_002428676.1| - 4.4e-48 164.3 0.0 5.9e-48 163.9 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain DHH PF01368.20 gi|218884295|ref|YP_002428677.1| - 0.00077 19.7 0.0 0.0013 19.0 0.0 1.3 1 0 0 1 1 1 1 DHH family CDP-OH_P_transf PF01066.21 gi|218884296|ref|YP_002428678.1| - 4.8e-12 46.5 4.2 4.8e-12 46.5 4.2 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase AP_endonuc_2 PF01261.24 gi|218884297|ref|YP_002428679.1| - 7.9e-18 64.7 0.0 9.8e-18 64.4 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF2120 PF09893.9 gi|218884297|ref|YP_002428679.1| - 0.0059 16.7 0.0 0.018 15.1 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2120) UvdE PF03851.14 gi|218884297|ref|YP_002428679.1| - 0.047 12.9 0.0 0.085 12.1 0.0 1.3 1 0 0 1 1 1 0 UV-endonuclease UvdE NUDIX PF00293.28 gi|218884298|ref|YP_002428680.1| - 4.8e-17 62.2 0.0 6.5e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain ATP-synt_D PF01813.17 gi|218884300|ref|YP_002428682.1| - 3.2e-35 121.8 12.3 3.6e-35 121.6 12.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF61 PF01886.16 gi|218884301|ref|YP_002428683.1| - 2.3e-34 118.2 0.2 2.5e-34 118.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 V-ATPase_G_2 PF16999.5 gi|218884302|ref|YP_002428684.1| - 8.5e-05 22.9 11.3 0.00013 22.3 11.3 1.4 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|218884302|ref|YP_002428684.1| - 0.0002 21.4 7.1 0.064 13.3 0.8 2.1 2 0 0 2 2 2 2 DivIVA protein HrpE PF06188.12 gi|218884302|ref|YP_002428684.1| - 0.0078 16.1 2.0 0.012 15.5 1.9 1.3 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.18 gi|218884302|ref|YP_002428684.1| - 0.073 13.2 13.0 2 8.5 13.0 2.1 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|218884302|ref|YP_002428684.1| - 0.099 12.0 13.4 0.18 11.2 2.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) RNase_J_C PF17770.1 gi|218884302|ref|YP_002428684.1| - 0.21 12.6 0.3 0.21 12.6 0.3 2.2 2 1 0 2 2 2 0 Ribonuclease J C-terminal domain vATP-synt_E PF01991.18 gi|218884302|ref|YP_002428684.1| - 0.45 9.9 10.9 0.14 11.5 7.4 1.8 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit ERp29 PF07749.12 gi|218884302|ref|YP_002428684.1| - 0.55 11.2 6.6 3.5 8.6 0.4 2.0 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain FmdE PF02663.14 gi|218884302|ref|YP_002428684.1| - 0.83 9.7 3.0 1.1 9.3 3.0 1.1 1 0 0 1 1 1 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DUF883 PF05957.13 gi|218884302|ref|YP_002428684.1| - 0.95 10.1 5.2 1.4 9.5 0.7 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) V_ATPase_I PF01496.19 gi|218884303|ref|YP_002428685.1| - 6.4e-23 80.6 10.4 7.3e-12 44.1 0.0 3.6 3 1 0 4 4 4 2 V-type ATPase 116kDa subunit family Xrn1_D3 PF18194.1 gi|218884303|ref|YP_002428685.1| - 0.0059 16.7 0.1 0.29 11.3 0.0 2.4 2 0 0 2 2 2 1 Exoribonuclease 1 Domain-3 MscL PF01741.18 gi|218884303|ref|YP_002428685.1| - 0.017 15.4 1.5 0.044 14.1 1.5 1.7 1 0 0 1 1 1 0 Large-conductance mechanosensitive channel, MscL SCO1-SenC PF02630.14 gi|218884303|ref|YP_002428685.1| - 0.033 14.1 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 SCO1/SenC NPV_P10 PF05531.12 gi|218884303|ref|YP_002428685.1| - 0.063 13.8 0.0 0.22 12.0 0.0 1.9 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF4988 PF16378.5 gi|218884303|ref|YP_002428685.1| - 0.088 12.5 0.3 0.91 9.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function Prefoldin PF02996.17 gi|218884303|ref|YP_002428685.1| - 0.69 9.8 4.6 2.9 7.8 0.1 3.0 3 0 0 3 3 3 0 Prefoldin subunit Spc7 PF08317.11 gi|218884303|ref|YP_002428685.1| - 1.4 7.7 4.6 0.31 9.9 1.1 1.5 2 0 0 2 2 2 0 Spc7 kinetochore protein ATP-synt_C PF00137.21 gi|218884304|ref|YP_002428686.1| - 3.4e-13 49.7 14.8 9.9e-08 32.2 1.1 2.2 2 0 0 2 2 2 2 ATP synthase subunit C vATP-synt_E PF01991.18 gi|218884305|ref|YP_002428687.1| - 3.8e-11 42.8 16.8 1.4e-10 40.9 16.8 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|218884305|ref|YP_002428687.1| - 0.0019 18.6 23.6 0.15 12.4 2.5 2.5 1 1 1 2 2 2 2 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|218884305|ref|YP_002428687.1| - 0.0057 16.7 14.9 0.074 13.1 3.9 2.7 1 1 2 3 3 3 2 DivIVA protein DUF3552 PF12072.8 gi|218884305|ref|YP_002428687.1| - 0.02 14.3 18.7 0.37 10.2 12.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) HrpE PF06188.12 gi|218884305|ref|YP_002428687.1| - 0.038 13.9 5.7 1.3 8.9 3.5 2.1 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E GARP PF16731.5 gi|218884305|ref|YP_002428687.1| - 0.054 13.2 7.5 0.083 12.6 7.5 1.3 1 0 0 1 1 1 0 Glutamic acid/alanine-rich protein of Trypanosoma ATP-synt_B PF00430.18 gi|218884305|ref|YP_002428687.1| - 0.089 12.9 18.7 0.72 9.9 12.6 2.2 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DUF2007 PF09413.10 gi|218884305|ref|YP_002428687.1| - 0.24 11.6 4.0 0.5 10.6 0.0 2.7 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein DUF2335 PF10097.9 gi|218884305|ref|YP_002428687.1| - 0.65 10.0 11.8 4.7 7.3 5.8 2.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2335) DctP PF03480.13 gi|218884305|ref|YP_002428687.1| - 2.9 7.2 5.1 5.1 6.3 5.1 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 RNase_J_C PF17770.1 gi|218884305|ref|YP_002428687.1| - 7.4 7.7 8.0 22 6.2 1.5 3.3 1 1 2 3 3 3 0 Ribonuclease J C-terminal domain AAA_11 PF13086.6 gi|218884305|ref|YP_002428687.1| - 9.7 5.9 7.7 12 5.6 7.1 1.4 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|218884308|ref|YP_002428690.1| - 1.5e-83 279.7 0.0 2.1e-83 279.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|218884308|ref|YP_002428690.1| - 6.6e-42 142.2 0.1 1.2e-41 141.4 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|218884308|ref|YP_002428690.1| - 1.3e-16 60.8 3.3 3.4e-16 59.5 3.3 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain DUF2085 PF09858.9 gi|218884308|ref|YP_002428690.1| - 0.15 12.6 0.0 0.35 11.4 0.0 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2085) AAA_22 PF13401.6 gi|218884308|ref|YP_002428690.1| - 0.16 12.2 0.0 0.34 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|218884309|ref|YP_002428691.1| - 1.2e-64 217.9 0.0 1.7e-64 217.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|218884309|ref|YP_002428691.1| - 0.0012 19.3 0.9 0.0024 18.4 0.9 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|218884309|ref|YP_002428691.1| - 0.044 13.9 2.2 0.045 13.9 0.4 1.9 2 0 0 2 2 2 0 HAS barrel domain Diphthami_syn_2 PF01902.17 gi|218884310|ref|YP_002428692.1| - 1.3e-50 172.0 0.0 1.5e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|218884310|ref|YP_002428692.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF3945 PF13101.6 gi|218884311|ref|YP_002428693.1| - 0.039 13.7 0.1 0.076 12.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) tRNA-synt_2b PF00587.25 gi|218884312|ref|YP_002428694.1| - 1.3e-28 100.2 0.0 2.4e-28 99.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|218884312|ref|YP_002428694.1| - 3.1e-21 75.3 0.1 5.5e-21 74.5 0.1 1.4 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|218884312|ref|YP_002428694.1| - 9.6e-07 28.9 0.0 3e-06 27.3 0.0 1.8 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal Phage_integrase PF00589.22 gi|218884315|ref|YP_002428697.1| - 5.8e-35 120.6 0.1 8.7e-35 120.0 0.1 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|218884315|ref|YP_002428697.1| - 3.3e-09 37.1 0.0 4.4e-07 30.3 0.0 2.4 1 1 1 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|218884315|ref|YP_002428697.1| - 5.8e-06 26.5 0.2 0.00024 21.3 0.0 2.8 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain zinc_ribbon_2 PF13240.6 gi|218884315|ref|YP_002428697.1| - 6.3e-05 22.6 0.6 0.00012 21.7 0.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|218884315|ref|YP_002428697.1| - 0.00017 22.3 0.2 0.00035 21.2 0.2 1.5 1 0 0 1 1 1 1 zinc-ribbon family DZR PF12773.7 gi|218884315|ref|YP_002428697.1| - 0.00055 19.9 0.4 0.00092 19.2 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|218884315|ref|YP_002428697.1| - 0.0031 17.6 0.4 0.0049 16.9 0.4 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|218884315|ref|YP_002428697.1| - 0.014 14.7 0.3 0.024 14.0 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Phage_int_SAM_3 PF14659.6 gi|218884315|ref|YP_002428697.1| - 0.023 15.0 0.0 0.065 13.5 0.0 1.8 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Hypoth_Ymh PF09509.10 gi|218884315|ref|YP_002428697.1| - 0.088 12.7 0.0 0.24 11.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (Hypoth_ymh) HypA PF01155.19 gi|218884315|ref|YP_002428697.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DHHA1 PF02272.19 gi|218884316|ref|YP_002428698.1| - 2.7e-12 47.3 0.1 7.3e-12 45.9 0.0 1.8 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|218884316|ref|YP_002428698.1| - 0.0012 19.1 0.0 0.0022 18.2 0.0 1.4 1 0 0 1 1 1 1 DHH family DUF2258 PF10015.9 gi|218884317|ref|YP_002428699.1| - 9e-30 102.6 1.6 9e-30 102.6 1.6 2.0 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2258) EcoR124_C PF12008.8 gi|218884317|ref|YP_002428699.1| - 0.0031 17.2 0.3 0.032 13.9 0.0 2.0 2 0 0 2 2 2 1 Type I restriction and modification enzyme - subunit R C terminal DUF4795 PF16043.5 gi|218884317|ref|YP_002428699.1| - 0.02 14.5 0.5 0.02 14.5 0.5 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) 60KD_IMP PF02096.20 gi|218884317|ref|YP_002428699.1| - 0.21 11.5 0.1 0.31 10.9 0.1 1.2 1 0 0 1 1 1 0 60Kd inner membrane protein NPHI_C PF08469.10 gi|218884320|ref|YP_002428702.1| - 0.055 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Nucleoside triphosphatase I C-terminal bact-PGI_C PF10432.9 gi|218884321|ref|YP_002428703.1| - 1.1e-36 126.2 0.0 1.6e-36 125.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|218884321|ref|YP_002428703.1| - 1.4e-06 28.2 0.0 6.3e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 SIS domain PAP2 PF01569.21 gi|218884322|ref|YP_002428704.1| - 1.6e-16 60.3 4.8 1.6e-16 60.3 4.8 3.1 3 2 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|218884322|ref|YP_002428704.1| - 3.9e-06 26.7 6.7 3.9e-06 26.7 6.7 2.5 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|218884322|ref|YP_002428704.1| - 0.0032 18.0 0.9 0.0032 18.0 0.9 2.5 2 1 0 2 2 2 1 PAP2 superfamily C-terminal DUF1652 PF07865.11 gi|218884322|ref|YP_002428704.1| - 0.051 13.4 0.0 11 6.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1652) UbiA PF01040.18 gi|218884323|ref|YP_002428705.1| - 3.1e-34 118.4 11.6 4.2e-34 118.0 11.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family PAP2 PF01569.21 gi|218884323|ref|YP_002428705.1| - 0.00039 20.2 1.0 0.00039 20.2 1.0 1.9 2 0 0 2 2 2 1 PAP2 superfamily HAD_2 PF13419.6 gi|218884324|ref|YP_002428706.1| - 9.8e-37 126.8 0.0 1.1e-36 126.5 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|218884324|ref|YP_002428706.1| - 3.2e-16 60.3 0.0 1.3e-14 55.0 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|218884324|ref|YP_002428706.1| - 3.1e-11 44.0 0.0 3.9e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|218884324|ref|YP_002428706.1| - 1e-09 38.3 0.0 1.6e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_PPase PF12689.7 gi|218884324|ref|YP_002428706.1| - 0.0046 16.8 0.0 0.12 12.2 0.0 2.1 2 0 0 2 2 2 1 Acid Phosphatase Put_Phosphatase PF06888.12 gi|218884324|ref|YP_002428706.1| - 0.035 13.5 0.0 0.35 10.2 0.0 2.1 2 1 0 2 2 2 0 Putative Phosphatase Hydrolase_3 PF08282.12 gi|218884324|ref|YP_002428706.1| - 0.078 12.7 0.0 2.1 8.0 0.0 2.6 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase DUF3146 PF11344.8 gi|218884324|ref|YP_002428706.1| - 0.083 12.6 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3146) Hydrolase_3 PF08282.12 gi|218884325|ref|YP_002428707.1| - 5.8e-21 75.4 0.0 1.7e-12 47.7 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|218884325|ref|YP_002428707.1| - 7.3e-05 22.4 0.0 0.00035 20.2 0.0 1.8 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|218884325|ref|YP_002428707.1| - 0.013 15.8 0.0 5.1 7.3 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|218884325|ref|YP_002428707.1| - 0.13 12.3 0.0 0.36 11.0 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|218884325|ref|YP_002428707.1| - 0.35 11.2 4.5 7.1 7.0 0.0 3.2 1 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.14 gi|218884326|ref|YP_002428708.1| - 7.2e-34 117.4 0.0 8.6e-34 117.1 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|218884326|ref|YP_002428708.1| - 2.3e-10 40.9 1.3 6.3e-06 26.7 0.1 3.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|218884326|ref|YP_002428708.1| - 2.4e-10 40.2 2.1 3.6e-07 29.7 0.2 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|218884326|ref|YP_002428708.1| - 9.1e-09 35.4 1.2 2.7e-07 30.7 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|218884326|ref|YP_002428708.1| - 2.4e-07 30.5 0.4 0.015 14.6 0.6 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|218884326|ref|YP_002428708.1| - 2e-06 27.2 0.1 0.027 13.5 0.0 3.2 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|218884326|ref|YP_002428708.1| - 4.2e-06 26.6 2.5 0.032 13.8 0.2 3.2 3 0 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|218884326|ref|YP_002428708.1| - 9.2e-06 24.6 0.8 0.0049 15.6 0.1 2.6 3 0 0 3 3 3 2 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|218884326|ref|YP_002428708.1| - 0.00038 19.8 0.2 0.21 10.8 0.0 2.6 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|218884326|ref|YP_002428708.1| - 0.00098 18.3 2.3 0.14 11.2 0.2 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|218884326|ref|YP_002428708.1| - 0.0013 18.8 0.3 0.24 11.4 0.1 3.2 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.6 gi|218884326|ref|YP_002428708.1| - 0.0024 17.8 0.5 0.12 12.3 0.1 3.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|218884326|ref|YP_002428708.1| - 0.0053 15.9 0.6 0.17 11.0 0.1 2.9 3 1 1 4 4 4 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|218884326|ref|YP_002428708.1| - 0.0059 17.0 0.1 0.13 12.7 0.0 2.4 2 1 0 2 2 2 1 Putative NAD(P)-binding Thi4 PF01946.17 gi|218884326|ref|YP_002428708.1| - 0.0089 15.3 0.6 0.063 12.5 0.0 2.2 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|218884326|ref|YP_002428708.1| - 0.014 14.6 0.2 0.034 13.4 0.0 1.6 2 0 0 2 2 2 0 FAD binding domain DUF498 PF04430.14 gi|218884326|ref|YP_002428708.1| - 0.044 13.9 0.0 17 5.6 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) Mur_ligase PF01225.25 gi|218884326|ref|YP_002428708.1| - 0.19 12.0 0.5 1.6 9.1 0.1 2.5 3 0 0 3 3 3 0 Mur ligase family, catalytic domain Fer4_11 PF13247.6 gi|218884327|ref|YP_002428709.1| - 1.1e-20 73.6 10.4 1.1e-20 73.6 10.4 1.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|218884327|ref|YP_002428709.1| - 6.1e-14 51.9 55.7 1.8e-06 28.0 10.7 3.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|218884327|ref|YP_002428709.1| - 1.1e-12 47.2 38.9 4.2e-06 26.3 3.7 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|218884327|ref|YP_002428709.1| - 7.6e-12 44.8 38.9 2e-05 24.5 2.8 4.9 4 2 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|218884327|ref|YP_002428709.1| - 1.3e-11 44.9 52.2 3.2e-06 27.6 13.1 3.9 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|218884327|ref|YP_002428709.1| - 1.5e-09 37.8 29.7 3.9e-06 26.9 12.0 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|218884327|ref|YP_002428709.1| - 1.3e-08 35.2 37.2 0.004 18.0 3.6 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|218884327|ref|YP_002428709.1| - 1.8e-08 34.0 34.4 9.4e-05 22.3 2.0 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|218884327|ref|YP_002428709.1| - 3.8e-07 30.1 36.2 0.0008 19.7 2.3 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|218884327|ref|YP_002428709.1| - 7.1e-07 30.1 28.0 0.012 16.5 1.8 4.8 3 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|218884327|ref|YP_002428709.1| - 1.6e-05 25.3 23.5 0.012 16.2 1.3 4.4 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|218884327|ref|YP_002428709.1| - 2e-05 24.6 30.7 0.0014 18.7 11.8 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|218884327|ref|YP_002428709.1| - 2.2e-05 24.8 26.8 0.024 15.1 9.4 4.1 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|218884327|ref|YP_002428709.1| - 0.055 14.0 0.5 0.055 14.0 0.5 4.3 4 2 1 5 5 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|218884327|ref|YP_002428709.1| - 0.53 10.5 24.4 0.1 12.8 2.6 3.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|218884327|ref|YP_002428709.1| - 0.82 10.5 23.6 0.44 11.3 6.2 3.4 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|218884327|ref|YP_002428709.1| - 2.2 9.2 21.9 0.66 10.9 0.9 4.0 3 1 1 4 4 4 0 4Fe-4S dicluster domain Proton_antipo_M PF00361.20 gi|218884328|ref|YP_002428710.1| - 4.2e-33 114.8 22.9 4.2e-33 114.8 22.9 2.5 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|218884329|ref|YP_002428711.1| - 3.6e-33 115.0 29.3 6.9e-33 114.1 29.3 1.5 1 0 0 1 1 1 1 Proton-conducting membrane transporter NADHdh PF00146.21 gi|218884331|ref|YP_002428713.1| - 4.1e-32 111.7 23.3 5.3e-32 111.3 23.3 1.0 1 0 0 1 1 1 1 NADH dehydrogenase ATP-synt_Z PF16594.5 gi|218884331|ref|YP_002428713.1| - 0.2 11.1 5.7 0.045 13.2 1.6 2.1 2 0 0 2 2 2 0 Putative AtpZ or ATP-synthase-associated Complex1_49kDa PF00346.19 gi|218884332|ref|YP_002428714.1| - 2.9e-64 216.8 0.1 9.7e-48 162.6 0.1 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|218884332|ref|YP_002428714.1| - 4.5e-19 69.3 0.0 1.3e-18 67.8 0.0 1.8 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|218884332|ref|YP_002428714.1| - 5.7e-17 61.8 3.7 2.2e-13 50.0 0.1 3.4 2 2 1 3 3 3 2 Nickel-dependent hydrogenase Fer4 PF00037.27 gi|218884333|ref|YP_002428715.1| - 1.4e-14 53.2 24.1 2.8e-09 36.4 4.4 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|218884333|ref|YP_002428715.1| - 5.3e-13 49.3 25.6 1.2e-11 45.0 8.3 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|218884333|ref|YP_002428715.1| - 3.5e-11 43.1 6.8 3.5e-11 43.1 6.8 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|218884333|ref|YP_002428715.1| - 9.3e-11 41.7 6.4 9.3e-11 41.7 6.4 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218884333|ref|YP_002428715.1| - 2.6e-10 39.9 24.3 5.7e-08 32.5 3.8 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|218884333|ref|YP_002428715.1| - 1.2e-09 38.1 9.1 1.2e-09 38.1 9.1 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|218884333|ref|YP_002428715.1| - 2.5e-09 37.9 14.2 0.00023 22.0 5.8 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|218884333|ref|YP_002428715.1| - 2.1e-06 27.5 2.9 2.1e-06 27.5 2.9 4.1 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|218884333|ref|YP_002428715.1| - 1.4e-05 25.5 15.5 0.0034 17.8 2.9 2.8 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|218884333|ref|YP_002428715.1| - 4.1e-05 23.8 1.5 4.1e-05 23.8 1.5 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|218884333|ref|YP_002428715.1| - 0.00044 20.7 15.9 0.0074 16.8 2.1 3.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|218884333|ref|YP_002428715.1| - 0.00077 20.2 18.1 0.0015 19.3 7.9 2.9 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|218884333|ref|YP_002428715.1| - 0.0041 17.9 12.5 0.022 15.6 0.2 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|218884333|ref|YP_002428715.1| - 0.0051 17.5 11.1 0.0069 17.1 0.2 3.0 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|218884333|ref|YP_002428715.1| - 0.019 15.2 13.2 0.19 11.9 1.7 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|218884333|ref|YP_002428715.1| - 0.021 15.4 3.7 0.021 15.4 3.7 3.4 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I HypA PF01155.19 gi|218884333|ref|YP_002428715.1| - 5.5 7.1 8.3 0.21 11.6 2.1 1.8 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Oxidored_q6 PF01058.22 gi|218884334|ref|YP_002428716.1| - 2.6e-21 75.8 0.0 3.2e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit GATase_4 PF13230.6 gi|218884336|ref|YP_002428718.1| - 3.5e-07 29.4 0.0 5e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|218884336|ref|YP_002428718.1| - 1.3e-05 25.4 0.0 1.9e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain NAD_kinase PF01513.21 gi|218884337|ref|YP_002428719.1| - 2.1e-48 165.0 0.0 2.4e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|218884337|ref|YP_002428719.1| - 0.0043 16.7 0.3 0.01 15.5 0.1 1.8 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain Metallophos PF00149.28 gi|218884338|ref|YP_002428720.1| - 5e-22 79.4 0.0 6.1e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase EntA_Immun PF08951.10 gi|218884339|ref|YP_002428721.1| - 0.012 15.9 0.1 0.028 14.8 0.1 1.6 1 1 0 1 1 1 0 Enterocin A Immunity RsbRD_N PF14361.6 gi|218884339|ref|YP_002428721.1| - 0.13 12.9 0.0 0.18 12.5 0.0 1.2 1 0 0 1 1 1 0 RsbT co-antagonist protein rsbRD N-terminal domain 3HCDH PF00725.22 gi|218884339|ref|YP_002428721.1| - 0.14 12.8 0.0 0.45 11.2 0.0 1.8 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Nexin_C PF08628.12 gi|218884339|ref|YP_002428721.1| - 0.16 12.6 0.0 0.2 12.2 0.0 1.1 1 0 0 1 1 1 0 Sorting nexin C terminal zf-ribbon_3 PF13248.6 gi|218884340|ref|YP_002428722.1| - 0.14 11.6 2.3 8.4 6.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Thioredoxin PF00085.20 gi|218884341|ref|YP_002428723.1| - 0.027 14.4 0.0 0.032 14.2 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Adenine_glyco PF03352.13 gi|218884343|ref|YP_002428725.1| - 0.079 12.7 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyladenine glycosylase GatD_N PF18195.1 gi|218884343|ref|YP_002428725.1| - 0.17 11.3 0.1 0.3 10.4 0.1 1.4 1 0 0 1 1 1 0 GatD N-terminal domain Cpn60_TCP1 PF00118.24 gi|218884344|ref|YP_002428726.1| - 3.8e-180 599.7 14.2 4.3e-180 599.5 14.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family FliH PF02108.16 gi|218884344|ref|YP_002428726.1| - 0.078 13.0 0.2 0.25 11.4 0.2 2.0 1 0 0 1 1 1 0 Flagellar assembly protein FliH RNA_pol_Rpb6 PF01192.22 gi|218884345|ref|YP_002428727.1| - 1.5e-11 44.0 0.0 2.4e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb6 Peptidase_M50 PF02163.22 gi|218884346|ref|YP_002428728.1| - 6.5e-09 35.4 16.5 7.6e-06 25.4 13.9 3.2 2 1 0 2 2 2 1 Peptidase family M50 Topoisom_bac PF01131.20 gi|218884347|ref|YP_002428729.1| - 2.2e-111 372.8 0.0 2.8e-111 372.5 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|218884347|ref|YP_002428729.1| - 2.3e-14 53.5 0.0 1.1e-13 51.3 0.0 2.2 2 0 0 2 2 2 1 Toprim domain Pyrophosphatase PF00719.19 gi|218884349|ref|YP_002428731.1| - 2.3e-59 199.8 0.1 2.6e-59 199.6 0.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF5622 PF18533.1 gi|218884349|ref|YP_002428731.1| - 0.51 10.5 2.8 1.4 9.1 0.2 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF5622) DUF1351 PF07083.11 gi|218884350|ref|YP_002428732.1| - 0.0022 17.8 3.8 0.0029 17.4 3.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1351) Prefoldin PF02996.17 gi|218884350|ref|YP_002428732.1| - 0.0067 16.3 4.5 0.34 10.8 0.1 2.4 2 1 0 2 2 2 2 Prefoldin subunit FliJ PF02050.16 gi|218884350|ref|YP_002428732.1| - 0.0071 16.6 1.8 0.014 15.6 0.7 1.8 2 0 0 2 2 2 1 Flagellar FliJ protein SOAR PF16533.5 gi|218884350|ref|YP_002428732.1| - 0.014 15.4 1.2 0.031 14.3 1.2 1.7 1 1 0 1 1 1 0 STIM1 Orai1-activating region CREPT PF16566.5 gi|218884350|ref|YP_002428732.1| - 0.022 14.9 2.0 0.043 14.0 1.1 1.8 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour THOC7 PF05615.13 gi|218884350|ref|YP_002428732.1| - 0.024 14.9 1.2 0.11 12.8 0.5 2.0 2 0 0 2 2 2 0 Tho complex subunit 7 Sec5 PF15469.6 gi|218884350|ref|YP_002428732.1| - 0.063 13.1 3.6 0.047 13.5 1.2 1.8 1 1 1 2 2 2 0 Exocyst complex component Sec5 Syntaxin_2 PF14523.6 gi|218884350|ref|YP_002428732.1| - 0.073 13.4 2.7 4 7.9 0.0 2.2 2 0 0 2 2 2 0 Syntaxin-like protein DUF5343 PF17278.2 gi|218884350|ref|YP_002428732.1| - 0.098 12.7 1.1 0.19 11.8 0.2 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5343) DUF1993 PF09351.10 gi|218884350|ref|YP_002428732.1| - 0.2 11.8 1.4 0.74 9.9 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1993) Spc7 PF08317.11 gi|218884350|ref|YP_002428732.1| - 0.38 9.6 5.5 1.5 7.7 5.5 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein ABC_tran_CTD PF16326.5 gi|218884350|ref|YP_002428732.1| - 1.9 8.8 7.9 5.3 7.4 0.6 2.2 2 0 0 2 2 2 0 ABC transporter C-terminal domain CoA_binding PF02629.19 gi|218884351|ref|YP_002428733.1| - 6.9e-30 103.6 1.0 1.7e-29 102.4 0.4 1.9 2 0 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.6 gi|218884351|ref|YP_002428733.1| - 1e-15 57.7 0.0 2.1e-14 53.5 0.0 2.1 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain Ligase_CoA PF00549.19 gi|218884351|ref|YP_002428733.1| - 1.1e-14 54.5 0.0 1.9e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.6 gi|218884351|ref|YP_002428733.1| - 2.8e-06 27.8 0.0 3.6e-05 24.2 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|218884352|ref|YP_002428734.1| - 1.7e-60 204.1 0.3 3.8e-60 202.9 0.1 1.6 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|218884352|ref|YP_002428734.1| - 1.7e-20 73.4 0.3 2.8e-20 72.7 0.3 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|218884352|ref|YP_002428734.1| - 4.2e-10 39.4 0.1 2.2e-09 37.1 0.1 2.0 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|218884352|ref|YP_002428734.1| - 2.7e-06 27.3 0.2 5.6e-06 26.3 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Succ_CoA_lig PF13607.6 gi|218884352|ref|YP_002428734.1| - 0.003 17.4 0.0 0.0053 16.6 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain ATP-grasp PF02222.22 gi|218884352|ref|YP_002428734.1| - 0.028 14.0 0.1 0.053 13.1 0.1 1.4 1 0 0 1 1 1 0 ATP-grasp domain THB PF18362.1 gi|218884352|ref|YP_002428734.1| - 0.28 10.8 1.0 43 3.8 0.1 3.2 3 0 0 3 3 3 0 Tri-helix bundle domain Resolvase PF00239.21 gi|218884353|ref|YP_002428735.1| - 3.9e-25 88.7 1.0 6.1e-25 88.0 1.0 1.4 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|218884353|ref|YP_002428735.1| - 7.3e-15 54.9 0.4 1.6e-14 53.8 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|218884353|ref|YP_002428735.1| - 1e-06 28.4 0.5 1e-06 28.4 0.5 2.5 4 0 0 4 4 3 1 MerR family regulatory protein HTH_23 PF13384.6 gi|218884353|ref|YP_002428735.1| - 2.5e-05 23.9 0.3 6.5e-05 22.6 0.2 1.8 1 1 0 1 1 1 1 Homeodomain-like domain MerR_1 PF13411.6 gi|218884353|ref|YP_002428735.1| - 8.2e-05 22.6 0.1 0.00019 21.5 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_Tnp_1 PF01527.20 gi|218884353|ref|YP_002428735.1| - 0.0002 21.6 0.7 0.00058 20.1 0.0 2.1 2 0 0 2 2 2 1 Transposase AbiEi_4 PF13338.6 gi|218884353|ref|YP_002428735.1| - 0.00081 19.5 0.2 0.0019 18.3 0.2 1.8 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_28 PF13518.6 gi|218884353|ref|YP_002428735.1| - 0.00097 19.2 0.1 0.0029 17.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Exc PF07825.11 gi|218884353|ref|YP_002428735.1| - 0.0012 18.8 0.2 0.0022 17.9 0.2 1.5 1 0 0 1 1 1 1 Excisionase-like protein HTH_29 PF13551.6 gi|218884353|ref|YP_002428735.1| - 0.0015 18.5 0.3 0.0046 17.0 0.1 1.8 1 1 1 2 2 2 1 Winged helix-turn helix HTH_3 PF01381.22 gi|218884353|ref|YP_002428735.1| - 0.0016 18.4 0.1 0.0045 17.0 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|218884353|ref|YP_002428735.1| - 0.002 18.5 0.8 0.18 12.2 0.1 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain Phage_AlpA PF05930.12 gi|218884353|ref|YP_002428735.1| - 0.0047 16.7 0.0 0.0086 15.9 0.0 1.4 1 0 0 1 1 1 1 Prophage CP4-57 regulatory protein (AlpA) Helicase_C PF00271.31 gi|218884353|ref|YP_002428735.1| - 0.0073 16.6 0.0 0.13 12.6 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain HTH_Tnp_ISL3 PF13542.6 gi|218884353|ref|YP_002428735.1| - 0.019 14.4 0.0 0.22 11.0 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MerR_2 PF13591.6 gi|218884353|ref|YP_002428735.1| - 0.027 14.3 0.0 0.071 13.0 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein DUF1323 PF07037.11 gi|218884353|ref|YP_002428735.1| - 0.06 13.7 0.0 0.097 13.1 0.0 1.5 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_26 PF13443.6 gi|218884353|ref|YP_002428735.1| - 0.064 13.7 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.7 gi|218884353|ref|YP_002428735.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 MarR family Phage_CI_repr PF07022.13 gi|218884353|ref|YP_002428735.1| - 0.13 12.4 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|218884354|ref|YP_002428736.1| - 2.9e-18 65.5 0.0 5.6e-18 64.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain LepA_C PF06421.12 gi|218884354|ref|YP_002428736.1| - 0.46 10.6 4.7 0.33 11.1 2.1 2.1 2 0 0 2 2 2 0 GTP-binding protein LepA C-terminus Flavin_Reduct PF01613.18 gi|218884355|ref|YP_002428737.1| - 2.7e-29 102.2 0.0 3.2e-29 102.0 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Pribosyltran PF00156.27 gi|218884356|ref|YP_002428738.1| - 1.3e-16 60.5 0.0 2e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|218884356|ref|YP_002428738.1| - 0.18 11.2 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PNP_UDP_1 PF01048.20 gi|218884357|ref|YP_002428739.1| - 1.9e-49 168.1 0.0 2.1e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Phageshock_PspG PF09583.10 gi|218884359|ref|YP_002428741.1| - 7.1 7.0 12.6 0.94 9.8 5.5 2.2 2 0 0 2 2 2 0 Phage shock protein G (Phageshock_PspG) RimK PF08443.11 gi|218884360|ref|YP_002428742.1| - 1.2e-21 77.2 0.0 1.6e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|218884360|ref|YP_002428742.1| - 8.5e-08 31.8 0.0 1.3e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|218884360|ref|YP_002428742.1| - 9.2e-07 29.1 0.0 2.3e-06 27.8 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Ins134_P3_kin PF05770.11 gi|218884360|ref|YP_002428742.1| - 3.8e-06 26.6 0.1 0.0025 17.4 0.0 2.2 1 1 0 2 2 2 2 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain ATPgrasp_ST PF14397.6 gi|218884360|ref|YP_002428742.1| - 0.00013 21.4 0.0 0.1 11.8 0.0 2.3 2 1 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|218884360|ref|YP_002428742.1| - 0.002 17.4 0.0 0.89 8.8 0.0 2.3 2 0 0 2 2 2 2 YheC/D like ATP-grasp baeRF_family10 PF18854.1 gi|218884361|ref|YP_002428743.1| - 0.17 12.1 0.2 0.71 10.1 0.1 2.0 2 1 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 DUF3144 PF11342.8 gi|218884361|ref|YP_002428743.1| - 0.17 12.2 0.7 0.44 10.9 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3144) Radical_SAM PF04055.21 gi|218884362|ref|YP_002428744.1| - 3.9e-14 53.4 0.0 5.8e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|218884362|ref|YP_002428744.1| - 4.7e-05 23.7 0.0 0.00013 22.2 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|218884362|ref|YP_002428744.1| - 0.0053 16.9 0.0 0.015 15.4 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain tRNA-synt_1 PF00133.22 gi|218884364|ref|YP_002428746.1| - 2.8e-111 372.7 0.0 8.6e-110 367.8 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|218884364|ref|YP_002428746.1| - 6.5e-31 107.4 1.4 1.4e-30 106.3 1.4 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|218884364|ref|YP_002428746.1| - 1.6e-26 93.0 2.8 7.2e-14 51.3 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|218884364|ref|YP_002428746.1| - 4.6e-07 29.5 0.0 9.9e-05 21.9 0.0 2.4 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 Mut7-C PF01927.16 gi|218884364|ref|YP_002428746.1| - 0.016 15.3 1.4 14 5.8 0.3 3.8 2 2 0 2 2 2 0 Mut7-C RNAse domain DZR PF12773.7 gi|218884364|ref|YP_002428746.1| - 0.13 12.3 1.9 9.1 6.4 0.2 3.1 3 0 0 3 3 3 0 Double zinc ribbon zf-TFIIB PF13453.6 gi|218884364|ref|YP_002428746.1| - 0.14 11.5 2.5 9.6 5.6 0.0 3.6 3 0 0 3 3 3 0 Transcription factor zinc-finger zf-ACC PF17848.1 gi|218884364|ref|YP_002428746.1| - 2.6 8.2 10.2 18 5.5 0.2 4.3 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain PHP_C PF13263.6 gi|218884365|ref|YP_002428747.1| - 6.1e-16 57.9 0.1 9.5e-16 57.3 0.1 1.3 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|218884365|ref|YP_002428747.1| - 1.1e-06 29.0 0.0 1.2e-06 29.0 0.0 1.3 1 1 0 1 1 1 1 PHP domain Metallophos PF00149.28 gi|218884366|ref|YP_002428748.1| - 3e-14 54.0 0.0 3.7e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|218884366|ref|YP_002428748.1| - 3.4e-07 30.6 0.0 1.3e-06 28.8 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HD PF01966.22 gi|218884368|ref|YP_002428750.1| - 8.1e-12 45.4 0.7 1.8e-11 44.3 0.2 1.7 2 0 0 2 2 2 1 HD domain AGOG PF09171.10 gi|218884369|ref|YP_002428751.1| - 3.6e-40 137.8 0.0 5.2e-40 137.3 0.0 1.1 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Flp_C PF05202.12 gi|218884369|ref|YP_002428751.1| - 0.1 12.1 0.1 0.15 11.6 0.1 1.2 1 0 0 1 1 1 0 Recombinase Flp protein DUF3536 PF12055.8 gi|218884369|ref|YP_002428751.1| - 0.14 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3536) Nitro_FeMo-Co PF02579.17 gi|218884370|ref|YP_002428752.1| - 2.4e-05 24.6 0.0 3.2e-05 24.2 0.0 1.3 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor T2SSE_N PF05157.15 gi|218884371|ref|YP_002428753.1| - 0.047 13.9 0.0 0.06 13.6 0.0 1.0 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein E, N-terminal domain DUF2283 PF10049.9 gi|218884372|ref|YP_002428754.1| - 5.9e-12 45.6 0.8 7.1e-12 45.4 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Reductase_C PF14759.6 gi|218884372|ref|YP_002428754.1| - 0.22 12.1 0.0 0.29 11.7 0.0 1.2 1 0 0 1 1 1 0 Reductase C-terminal Methyltr_RsmB-F PF01189.17 gi|218884374|ref|YP_002428756.1| - 1.4e-38 132.6 0.0 1.9e-38 132.2 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|218884374|ref|YP_002428756.1| - 1e-06 28.6 0.0 2e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 gi|218884374|ref|YP_002428756.1| - 0.00078 19.3 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain YedD PF13987.6 gi|218884374|ref|YP_002428756.1| - 0.0021 17.8 0.0 0.0065 16.3 0.0 1.8 1 0 0 1 1 1 1 YedD-like protein FtsJ PF01728.19 gi|218884374|ref|YP_002428756.1| - 0.022 14.9 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_11 PF08241.12 gi|218884374|ref|YP_002428756.1| - 0.061 14.0 0.0 12 6.6 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_5 PF01795.19 gi|218884374|ref|YP_002428756.1| - 0.061 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family Methyltransf_25 PF13649.6 gi|218884374|ref|YP_002428756.1| - 0.09 13.5 0.0 0.48 11.2 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Met_10 PF02475.16 gi|218884374|ref|YP_002428756.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|218884374|ref|YP_002428756.1| - 0.19 11.4 0.0 0.41 10.3 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PIN_6 PF17146.4 gi|218884375|ref|YP_002428757.1| - 1.1e-16 61.0 0.1 1.5e-16 60.6 0.1 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease zf-ribbon_3 PF13248.6 gi|218884375|ref|YP_002428757.1| - 5.3e-06 25.7 4.4 1e-05 24.7 4.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|218884375|ref|YP_002428757.1| - 0.00065 19.8 2.5 0.029 14.5 0.2 2.4 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|218884375|ref|YP_002428757.1| - 0.0046 16.9 3.9 0.011 15.7 0.2 2.4 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|218884375|ref|YP_002428757.1| - 0.006 16.6 0.3 0.0099 15.9 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|218884375|ref|YP_002428757.1| - 0.065 13.0 2.7 0.46 10.3 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2HC5 PF06221.13 gi|218884375|ref|YP_002428757.1| - 0.074 13.0 0.2 0.13 12.3 0.2 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Zn-ribbon_8 PF09723.10 gi|218884375|ref|YP_002428757.1| - 0.12 12.5 3.0 2.1 8.5 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain RecR PF02132.15 gi|218884375|ref|YP_002428757.1| - 0.13 11.9 0.4 0.26 10.9 0.4 1.5 1 0 0 1 1 1 0 RecR protein zinc_ribbon_2 PF13240.6 gi|218884375|ref|YP_002428757.1| - 0.15 11.8 4.2 6.6 6.6 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|218884375|ref|YP_002428757.1| - 0.22 11.5 0.6 0.49 10.4 0.6 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|218884375|ref|YP_002428757.1| - 0.25 11.3 3.0 7.9 6.5 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-FPG_IleRS PF06827.14 gi|218884375|ref|YP_002428757.1| - 2.8 7.9 5.7 15 5.6 0.3 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS NAD_kinase PF01513.21 gi|218884376|ref|YP_002428758.1| - 1.9e-21 76.6 0.3 5.3e-21 75.1 0.3 1.6 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|218884376|ref|YP_002428758.1| - 0.0043 16.7 0.0 0.0085 15.7 0.0 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Met_10 PF02475.16 gi|218884377|ref|YP_002428759.1| - 5.7e-40 137.2 0.0 7.8e-40 136.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|218884377|ref|YP_002428759.1| - 1.3e-08 34.6 0.9 1.3e-08 34.6 0.9 1.8 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|218884377|ref|YP_002428759.1| - 5.2e-06 26.1 0.0 7.6e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltr_RsmB-F PF01189.17 gi|218884377|ref|YP_002428759.1| - 0.0082 15.8 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F DNA_methylase PF00145.17 gi|218884377|ref|YP_002428759.1| - 0.07 12.5 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Cons_hypoth95 PF03602.15 gi|218884377|ref|YP_002428759.1| - 0.16 11.6 0.0 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 TRM PF02005.16 gi|218884377|ref|YP_002428759.1| - 0.17 11.0 0.0 0.32 10.1 0.0 1.4 2 0 0 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase PCMT PF01135.19 gi|218884378|ref|YP_002428760.1| - 1.4e-68 230.8 0.0 1.6e-68 230.6 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|218884378|ref|YP_002428760.1| - 9.4e-11 41.7 0.0 1.2e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|218884378|ref|YP_002428760.1| - 6.5e-08 33.2 0.0 9.2e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|218884378|ref|YP_002428760.1| - 5.2e-06 27.0 0.0 7.4e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|218884378|ref|YP_002428760.1| - 7e-06 27.0 0.0 1e-05 26.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|218884378|ref|YP_002428760.1| - 1.4e-05 24.9 0.0 2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.20 gi|218884378|ref|YP_002428760.1| - 0.00015 20.9 0.0 0.00098 18.3 0.0 1.9 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|218884378|ref|YP_002428760.1| - 0.0014 18.6 0.0 0.0027 17.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|218884378|ref|YP_002428760.1| - 0.0022 17.2 0.0 0.0032 16.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Ubie_methyltran PF01209.18 gi|218884378|ref|YP_002428760.1| - 0.005 16.2 0.0 0.0058 16.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|218884378|ref|YP_002428760.1| - 0.0082 16.0 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|218884378|ref|YP_002428760.1| - 0.024 14.6 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain POTRA PF07244.15 gi|218884378|ref|YP_002428760.1| - 0.061 13.9 0.0 1 10.0 0.0 2.3 2 0 0 2 2 2 0 Surface antigen variable number repeat F420_oxidored PF03807.17 gi|218884378|ref|YP_002428760.1| - 0.096 13.3 0.1 0.24 12.0 0.1 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CMAS PF02353.20 gi|218884378|ref|YP_002428760.1| - 0.11 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.17 gi|218884378|ref|YP_002428760.1| - 0.22 10.6 0.0 0.31 10.1 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin XPG_I PF00867.18 gi|218884379|ref|YP_002428761.1| - 1.9e-26 92.2 0.0 3.4e-26 91.4 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|218884379|ref|YP_002428761.1| - 2.6e-20 72.8 0.0 4.6e-20 72.0 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|218884379|ref|YP_002428761.1| - 0.0022 18.6 2.6 0.0032 18.0 0.1 2.4 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold DUF4878 PF12870.7 gi|218884379|ref|YP_002428761.1| - 0.14 12.5 0.2 0.39 11.0 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) HTH_20 PF12840.7 gi|218884380|ref|YP_002428762.1| - 0.00023 21.1 0.0 0.00027 20.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 gi|218884380|ref|YP_002428762.1| - 0.028 14.4 0.1 0.038 14.0 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DNAJ_related PF12339.8 gi|218884380|ref|YP_002428762.1| - 0.049 13.8 0.0 0.06 13.6 0.0 1.2 1 0 0 1 1 1 0 DNA-J related protein DUF2492 PF10678.9 gi|218884380|ref|YP_002428762.1| - 0.076 13.3 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2492) FUR PF01475.19 gi|218884380|ref|YP_002428762.1| - 0.13 12.4 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family AAA PF00004.29 gi|218884381|ref|YP_002428763.1| - 3.8e-99 328.3 0.0 1.1e-49 168.2 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|218884381|ref|YP_002428763.1| - 8.3e-31 105.5 0.0 5.6e-15 54.9 0.0 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|218884381|ref|YP_002428763.1| - 1e-21 76.9 0.2 2.9e-21 75.4 0.2 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|218884381|ref|YP_002428763.1| - 1.3e-16 60.7 0.1 3.2e-07 30.2 0.0 4.0 5 0 0 5 5 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|218884381|ref|YP_002428763.1| - 1.5e-15 58.0 0.1 1.1e-06 29.1 0.0 3.8 2 2 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|218884381|ref|YP_002428763.1| - 7.1e-14 52.3 0.0 8.2e-08 32.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|218884381|ref|YP_002428763.1| - 2.1e-13 50.5 0.8 4.1e-06 26.8 0.1 3.7 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|218884381|ref|YP_002428763.1| - 3.3e-11 43.0 0.7 0.00016 21.1 0.0 2.7 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|218884381|ref|YP_002428763.1| - 8.8e-11 42.1 0.0 5e-05 23.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|218884381|ref|YP_002428763.1| - 1e-10 42.0 1.0 0.00034 20.9 0.1 4.0 2 2 0 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|218884381|ref|YP_002428763.1| - 4e-10 39.8 0.0 0.00068 19.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|218884381|ref|YP_002428763.1| - 1.1e-08 35.7 0.0 0.0042 17.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|218884381|ref|YP_002428763.1| - 2e-08 34.6 0.0 0.0031 17.9 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|218884381|ref|YP_002428763.1| - 5.7e-08 33.2 0.0 0.0027 17.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|218884381|ref|YP_002428763.1| - 1.2e-07 31.6 0.1 0.0075 16.0 0.0 2.6 3 0 0 3 3 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|218884381|ref|YP_002428763.1| - 1.7e-07 30.8 0.2 0.016 14.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|218884381|ref|YP_002428763.1| - 3e-07 30.6 2.3 0.27 11.1 0.0 4.0 2 2 2 4 4 4 2 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|218884381|ref|YP_002428763.1| - 5.3e-07 29.1 0.0 0.03 13.5 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|218884381|ref|YP_002428763.1| - 9.8e-07 28.7 0.1 0.01 15.6 0.0 2.6 2 1 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|218884381|ref|YP_002428763.1| - 1.1e-06 28.7 0.0 0.069 13.2 0.0 3.1 3 0 0 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|218884381|ref|YP_002428763.1| - 4e-06 27.4 0.0 0.092 13.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter ATPase PF06745.13 gi|218884381|ref|YP_002428763.1| - 4.2e-06 26.3 0.5 0.26 10.6 0.0 3.4 2 1 1 3 3 3 2 KaiC AAA_3 PF07726.11 gi|218884381|ref|YP_002428763.1| - 6.5e-06 26.0 0.0 0.066 13.1 0.0 3.1 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|218884381|ref|YP_002428763.1| - 7.7e-06 25.7 0.0 0.1 12.3 0.0 3.2 2 1 0 2 2 2 2 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|218884381|ref|YP_002428763.1| - 9.6e-06 25.0 0.0 0.12 11.6 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin Parvo_NS1 PF01057.17 gi|218884381|ref|YP_002428763.1| - 1.6e-05 24.2 0.1 0.021 13.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_7 PF12775.7 gi|218884381|ref|YP_002428763.1| - 1.7e-05 24.4 0.0 0.032 13.7 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region NACHT PF05729.12 gi|218884381|ref|YP_002428763.1| - 1.8e-05 24.7 0.2 0.25 11.2 0.0 3.2 4 0 0 4 4 3 2 NACHT domain Rad17 PF03215.15 gi|218884381|ref|YP_002428763.1| - 3.3e-05 23.9 0.0 0.21 11.5 0.0 3.2 2 1 1 3 3 3 1 Rad17 P-loop domain Bac_DnaA PF00308.18 gi|218884381|ref|YP_002428763.1| - 3.7e-05 23.7 0.0 0.018 14.9 0.0 2.6 2 1 0 2 2 2 1 Bacterial dnaA protein CDC48_2 PF02933.17 gi|218884381|ref|YP_002428763.1| - 0.00021 21.0 0.0 0.0005 19.8 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_25 PF13481.6 gi|218884381|ref|YP_002428763.1| - 0.00022 20.8 7.3 0.42 10.2 0.1 4.1 2 2 1 4 4 4 2 AAA domain AAA_17 PF13207.6 gi|218884381|ref|YP_002428763.1| - 0.00025 21.5 0.0 1.3 9.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|218884381|ref|YP_002428763.1| - 0.00033 20.2 0.3 0.67 9.4 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein DUF2075 PF09848.9 gi|218884381|ref|YP_002428763.1| - 0.00062 19.1 0.0 0.047 12.9 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|218884381|ref|YP_002428763.1| - 0.0011 18.2 0.0 1.1 8.3 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_19 PF13245.6 gi|218884381|ref|YP_002428763.1| - 0.0027 18.1 0.9 3.9 7.8 0.1 3.3 2 1 1 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|218884381|ref|YP_002428763.1| - 0.003 17.4 0.0 0.5 10.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|218884381|ref|YP_002428763.1| - 0.0036 17.4 0.0 4 7.5 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Viral_helicase1 PF01443.18 gi|218884381|ref|YP_002428763.1| - 0.0041 16.9 0.0 1.5 8.5 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Vps4_C PF09336.10 gi|218884381|ref|YP_002428763.1| - 0.0041 17.1 0.0 0.11 12.5 0.0 2.5 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain NTPase_1 PF03266.15 gi|218884381|ref|YP_002428763.1| - 0.0056 16.6 0.2 3.2 7.6 0.1 3.4 2 1 0 2 2 2 0 NTPase AAA_30 PF13604.6 gi|218884381|ref|YP_002428763.1| - 0.0089 15.8 0.1 1.7 8.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|218884381|ref|YP_002428763.1| - 0.009 15.8 0.0 2.5 7.8 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SKI PF01202.22 gi|218884381|ref|YP_002428763.1| - 0.0091 16.1 0.0 4.6 7.3 0.0 2.4 2 0 0 2 2 2 0 Shikimate kinase UFD1 PF03152.14 gi|218884381|ref|YP_002428763.1| - 0.0097 15.4 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 AFG1_ATPase PF03969.16 gi|218884381|ref|YP_002428763.1| - 0.012 14.5 0.4 1.2 7.9 0.1 2.4 2 1 0 2 2 2 0 AFG1-like ATPase T2SSE PF00437.20 gi|218884381|ref|YP_002428763.1| - 0.019 14.1 0.0 0.19 10.8 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein Guanylate_kin PF00625.21 gi|218884381|ref|YP_002428763.1| - 0.023 14.4 0.1 22 4.7 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase Cytidylate_kin PF02224.18 gi|218884381|ref|YP_002428763.1| - 0.037 13.8 0.1 4.4 7.0 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase SRPRB PF09439.10 gi|218884381|ref|YP_002428763.1| - 0.038 13.4 0.0 7.6 5.9 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit IPT PF01745.16 gi|218884381|ref|YP_002428763.1| - 0.072 12.5 0.0 7.6 5.9 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase KAP_NTPase PF07693.14 gi|218884381|ref|YP_002428763.1| - 0.073 12.3 0.1 34 3.5 0.1 3.0 2 1 1 3 3 3 0 KAP family P-loop domain Cytidylate_kin2 PF13189.6 gi|218884381|ref|YP_002428763.1| - 0.075 13.2 0.0 7.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family ATP-synt_ab PF00006.25 gi|218884381|ref|YP_002428763.1| - 0.085 12.5 0.0 10 5.7 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain DAP3 PF10236.9 gi|218884381|ref|YP_002428763.1| - 0.095 11.8 0.0 11 5.1 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 ResIII PF04851.15 gi|218884381|ref|YP_002428763.1| - 0.11 12.4 0.0 4.2 7.3 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit PSI_PsaE PF02427.17 gi|218884381|ref|YP_002428763.1| - 0.15 11.7 0.1 0.64 9.7 0.2 1.9 2 0 0 2 2 1 0 Photosystem I reaction centre subunit IV / PsaE AAA_6 PF12774.7 gi|218884381|ref|YP_002428763.1| - 0.2 10.6 0.1 0.95 8.4 0.0 1.9 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region HTH_45 PF14947.6 gi|218884382|ref|YP_002428764.1| - 3.2e-05 23.8 0.2 3.8e-05 23.6 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix ABC_tran PF00005.27 gi|218884383|ref|YP_002428765.1| - 2.2e-34 118.9 0.0 3.4e-34 118.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218884383|ref|YP_002428765.1| - 1.8e-06 28.0 0.1 0.028 14.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|218884383|ref|YP_002428765.1| - 0.00029 20.9 0.0 0.00061 19.9 0.0 1.6 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|218884383|ref|YP_002428765.1| - 0.00061 19.3 0.2 0.0097 15.4 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|218884383|ref|YP_002428765.1| - 0.013 15.5 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain TOBE PF03459.17 gi|218884383|ref|YP_002428765.1| - 0.014 15.6 0.1 0.032 14.5 0.1 1.6 1 0 0 1 1 1 0 TOBE domain RNA_helicase PF00910.22 gi|218884383|ref|YP_002428765.1| - 0.035 14.5 0.0 0.16 12.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_22 PF13401.6 gi|218884383|ref|YP_002428765.1| - 0.038 14.3 0.1 0.083 13.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain sCache_3_2 PF17203.4 gi|218884383|ref|YP_002428765.1| - 0.063 13.4 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Single cache domain 3 AAA_29 PF13555.6 gi|218884383|ref|YP_002428765.1| - 0.073 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|218884383|ref|YP_002428765.1| - 0.1 13.0 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|218884383|ref|YP_002428765.1| - 0.11 13.0 0.1 0.22 12.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain KH_5 PF13184.6 gi|218884385|ref|YP_002428767.1| - 1e-05 25.5 0.1 1.7e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 NusA-like KH domain SKI PF01202.22 gi|218884385|ref|YP_002428767.1| - 0.055 13.6 0.1 0.079 13.1 0.1 1.2 1 0 0 1 1 1 0 Shikimate kinase RII_binding_1 PF10522.9 gi|218884385|ref|YP_002428767.1| - 3.1 8.2 4.7 2 8.9 0.2 2.8 3 0 0 3 3 3 0 RII binding domain TruD PF01142.18 gi|218884386|ref|YP_002428768.1| - 2.9e-44 151.6 0.3 5.1e-36 124.4 0.3 3.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.16 gi|218884387|ref|YP_002428769.1| - 6.4e-42 142.5 0.0 7.1e-42 142.4 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 NAD_binding_10 PF13460.6 gi|218884387|ref|YP_002428769.1| - 0.017 15.0 0.0 0.021 14.7 0.0 1.1 1 0 0 1 1 1 0 NAD(P)H-binding DUF1102 PF06510.11 gi|218884387|ref|YP_002428769.1| - 0.15 12.2 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1102) DUF1610 PF07754.11 gi|218884388|ref|YP_002428770.1| - 2.3e-09 37.0 10.4 5.5e-07 29.4 2.8 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.7 gi|218884388|ref|YP_002428770.1| - 6.8e-05 22.8 11.0 0.0019 18.2 12.1 2.3 1 1 1 2 2 2 2 Double zinc ribbon zf-CHY PF05495.12 gi|218884388|ref|YP_002428770.1| - 0.0002 21.8 7.2 0.00035 21.0 7.2 1.5 1 1 0 1 1 1 1 CHY zinc finger HypA PF01155.19 gi|218884388|ref|YP_002428770.1| - 0.0016 18.5 7.8 0.011 15.7 0.1 2.0 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|218884388|ref|YP_002428770.1| - 0.0037 16.9 15.9 0.018 14.7 2.8 3.6 2 2 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein DUF1272 PF06906.11 gi|218884388|ref|YP_002428770.1| - 0.0048 16.9 10.6 0.077 13.1 2.1 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF1272) zf-RING_7 PF02591.15 gi|218884388|ref|YP_002428770.1| - 0.0063 16.7 13.8 0.87 9.8 0.1 3.4 3 1 0 3 3 3 2 C4-type zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|218884388|ref|YP_002428770.1| - 0.0068 16.3 8.2 0.036 14.0 0.2 2.3 1 1 1 2 2 2 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|218884388|ref|YP_002428770.1| - 0.0074 15.7 15.7 0.095 12.1 4.1 3.3 3 1 0 3 3 3 2 zinc-ribbon domain tRNA-synt_1f PF01921.18 gi|218884388|ref|YP_002428770.1| - 0.008 15.1 0.3 0.008 15.1 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) zinc_ribbon_4 PF13717.6 gi|218884388|ref|YP_002428770.1| - 0.0086 16.0 9.2 4.6 7.2 0.0 4.0 4 0 0 4 4 4 0 zinc-ribbon domain DUF2321 PF10083.9 gi|218884388|ref|YP_002428770.1| - 0.02 14.5 4.8 0.03 13.9 4.8 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) DUF1258 PF06869.12 gi|218884388|ref|YP_002428770.1| - 0.028 13.9 2.9 0.031 13.8 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) DUF2752 PF10825.8 gi|218884388|ref|YP_002428770.1| - 0.045 13.8 1.6 7.6 6.7 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) PolC_DP2 PF03833.13 gi|218884388|ref|YP_002428770.1| - 0.045 11.6 2.8 0.045 11.6 2.8 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF35_N PF12172.8 gi|218884388|ref|YP_002428770.1| - 0.058 13.3 2.6 0.058 13.3 2.6 3.0 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Acetone_carb_G PF08882.11 gi|218884388|ref|YP_002428770.1| - 0.061 13.5 5.7 1.1 9.4 0.7 2.4 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Mu-like_Com PF10122.9 gi|218884388|ref|YP_002428770.1| - 0.085 12.3 0.3 0.085 12.3 0.3 2.9 1 1 1 2 2 2 0 Mu-like prophage protein Com PSCyt3 PF07627.11 gi|218884388|ref|YP_002428770.1| - 0.13 12.5 0.1 0.13 12.5 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1588) Nop10p PF04135.12 gi|218884388|ref|YP_002428770.1| - 0.16 12.0 8.4 0.59 10.2 2.8 2.2 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-Mss51 PF13824.6 gi|218884388|ref|YP_002428770.1| - 0.16 12.1 9.7 81 3.4 9.7 2.3 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-LITAF-like PF10601.9 gi|218884388|ref|YP_002428770.1| - 0.18 12.1 13.8 0.59 10.4 1.7 3.7 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|218884388|ref|YP_002428770.1| - 0.25 11.6 10.1 0.38 11.0 5.1 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-RING_5 PF14634.6 gi|218884388|ref|YP_002428770.1| - 0.25 11.3 9.7 1.2 9.2 0.5 2.3 2 0 0 2 2 2 0 zinc-RING finger domain TF_Zn_Ribbon PF08271.12 gi|218884388|ref|YP_002428770.1| - 0.27 10.8 0.5 0.27 10.8 0.5 3.7 1 1 2 3 3 3 0 TFIIB zinc-binding DpnI PF06044.12 gi|218884388|ref|YP_002428770.1| - 0.31 10.7 5.3 0.28 10.8 4.9 1.3 1 1 0 1 1 1 0 Dam-replacing family C1_2 PF03107.16 gi|218884388|ref|YP_002428770.1| - 0.44 10.9 10.7 1.5 9.2 2.4 2.1 1 1 1 2 2 2 0 C1 domain TackOD1 PF18551.1 gi|218884388|ref|YP_002428770.1| - 0.58 9.8 8.9 3.3 7.3 0.3 2.1 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zf_UBZ PF18439.1 gi|218884388|ref|YP_002428770.1| - 0.73 9.5 14.9 7.3 6.3 0.3 4.0 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger Rpr2 PF04032.16 gi|218884388|ref|YP_002428770.1| - 0.92 9.8 10.9 47 4.4 10.9 3.2 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain ADK_lid PF05191.14 gi|218884388|ref|YP_002428770.1| - 1 9.4 11.1 13 5.8 3.0 3.7 2 1 0 2 2 2 0 Adenylate kinase, active site lid Sgf11 PF08209.11 gi|218884388|ref|YP_002428770.1| - 1.2 8.8 0.1 1.2 8.8 0.1 3.8 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) Nudix_N_2 PF14803.6 gi|218884388|ref|YP_002428770.1| - 1.3 9.0 13.4 49 4.0 0.0 3.8 2 1 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|218884388|ref|YP_002428770.1| - 1.4 8.7 21.3 12 5.7 8.8 3.7 2 1 1 3 3 3 0 zinc-ribbon domain zf-MYND PF01753.18 gi|218884388|ref|YP_002428770.1| - 1.5 9.0 10.4 51 4.1 10.4 2.5 1 1 0 1 1 1 0 MYND finger zf_Rg PF17915.1 gi|218884388|ref|YP_002428770.1| - 1.5 8.2 15.0 0.54 9.7 1.7 3.2 2 1 1 3 3 3 0 Reverse gyrase zinc finger Zn-ribbon_8 PF09723.10 gi|218884388|ref|YP_002428770.1| - 1.6 8.9 17.0 47 4.2 0.1 3.7 2 1 0 2 2 2 0 Zinc ribbon domain zf-AN1 PF01428.16 gi|218884388|ref|YP_002428770.1| - 1.8 8.8 13.4 68 3.7 3.5 3.0 1 1 2 3 3 3 0 AN1-like Zinc finger Auto_anti-p27 PF06677.12 gi|218884388|ref|YP_002428770.1| - 2.5 8.3 13.3 1.1 9.5 1.8 3.0 1 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2072 PF09845.9 gi|218884388|ref|YP_002428770.1| - 2.7 8.3 9.8 7.4 6.8 5.6 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein zf-HIT PF04438.16 gi|218884388|ref|YP_002428770.1| - 3.7 7.5 17.0 0.71 9.8 6.6 2.9 2 2 0 2 2 2 0 HIT zinc finger RNHCP PF12647.7 gi|218884388|ref|YP_002428770.1| - 4.2 7.4 10.6 3.5 7.7 0.6 2.7 1 1 2 3 3 3 0 RNHCP domain zf-B_box PF00643.24 gi|218884388|ref|YP_002428770.1| - 5.2 7.3 14.0 2.9 8.1 7.2 2.6 1 1 0 2 2 2 0 B-box zinc finger Dynactin_p62 PF05502.13 gi|218884388|ref|YP_002428770.1| - 9.2 4.9 10.1 2.5 6.8 7.5 1.5 1 1 1 2 2 2 0 Dynactin p62 family zf_C2H2_10 PF18414.1 gi|218884388|ref|YP_002428770.1| - 9.6 5.8 10.4 8.6 6.0 0.3 3.0 3 0 0 3 3 3 0 C2H2 type zinc-finger EF1_GNE PF00736.19 gi|218884389|ref|YP_002428771.1| - 2.1e-19 69.5 0.0 2.4e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain TrkA_N PF02254.18 gi|218884390|ref|YP_002428772.1| - 1.6e-15 57.3 1.9 2.5e-15 56.8 1.9 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|218884390|ref|YP_002428772.1| - 3.2e-05 24.3 0.0 5.6e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_C PF02080.21 gi|218884390|ref|YP_002428772.1| - 0.0097 15.7 0.2 0.0097 15.7 0.2 1.9 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|218884390|ref|YP_002428772.1| - 0.015 15.8 0.3 0.12 13.0 0.1 2.5 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|218884390|ref|YP_002428772.1| - 0.019 15.2 0.2 0.076 13.3 0.2 1.8 1 1 1 2 2 2 0 Saccharopine dehydrogenase NADP binding domain MS_channel PF00924.18 gi|218884392|ref|YP_002428774.1| - 0.00012 21.7 1.4 0.00012 21.7 1.4 2.3 1 1 2 3 3 3 1 Mechanosensitive ion channel UPF0004 PF00919.20 gi|218884393|ref|YP_002428775.1| - 1.2e-22 79.7 0.1 2.4e-22 78.8 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|218884393|ref|YP_002428775.1| - 8.8e-21 75.0 0.2 5.1e-20 72.5 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.20 gi|218884393|ref|YP_002428775.1| - 0.006 16.6 0.0 0.024 14.6 0.0 2.0 2 0 0 2 2 2 1 TRAM domain Polysacc_deac_2 PF04748.13 gi|218884393|ref|YP_002428775.1| - 0.031 13.5 0.0 0.084 12.1 0.0 1.7 2 0 0 2 2 2 0 Divergent polysaccharide deacetylase eIF-5_eIF-2B PF01873.17 gi|218884394|ref|YP_002428776.1| - 1.5e-33 115.2 0.0 1.7e-33 114.9 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Elf1 PF05129.13 gi|218884394|ref|YP_002428776.1| - 0.013 15.6 0.4 0.019 15.0 0.4 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.6 gi|218884394|ref|YP_002428776.1| - 0.027 13.9 0.4 2.6 7.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|218884394|ref|YP_002428776.1| - 0.029 14.4 0.3 0.037 14.0 0.3 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|218884394|ref|YP_002428776.1| - 0.039 13.9 1.2 0.069 13.1 1.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|218884394|ref|YP_002428776.1| - 0.041 13.9 0.3 0.069 13.1 0.3 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|218884394|ref|YP_002428776.1| - 0.068 13.3 1.1 0.2 11.8 1.1 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DUF678 PF05077.12 gi|218884394|ref|YP_002428776.1| - 0.091 12.9 1.7 8 6.7 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF678) Rubredoxin_2 PF18073.1 gi|218884394|ref|YP_002428776.1| - 0.19 11.5 1.9 10 6.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Lar_restr_allev PF14354.6 gi|218884394|ref|YP_002428776.1| - 0.24 11.8 0.8 9.1 6.7 0.0 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF35_N PF12172.8 gi|218884394|ref|YP_002428776.1| - 0.29 11.0 3.9 6 6.8 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNA_POL_M_15KD PF02150.16 gi|218884394|ref|YP_002428776.1| - 0.56 10.1 2.2 12 5.9 1.6 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|218884394|ref|YP_002428776.1| - 1.5 8.8 5.1 12 5.9 0.6 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF424 PF04242.13 gi|218884395|ref|YP_002428777.1| - 3.4e-21 75.3 0.1 4.2e-21 75.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.13 gi|218884396|ref|YP_002428778.1| - 2.3e-40 138.6 0.8 2.7e-40 138.4 0.8 1.1 1 0 0 1 1 1 1 NMD3 family FBA_3 PF08268.12 gi|218884396|ref|YP_002428778.1| - 0.04 13.9 0.0 0.079 12.9 0.0 1.5 1 0 0 1 1 1 0 F-box associated domain DUF5397 PF17375.2 gi|218884396|ref|YP_002428778.1| - 0.1 12.3 0.8 1.5 8.6 0.1 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5397) DZR PF12773.7 gi|218884396|ref|YP_002428778.1| - 0.12 12.5 7.5 1.3 9.1 4.8 2.9 2 1 0 2 2 2 0 Double zinc ribbon DUF35_N PF12172.8 gi|218884396|ref|YP_002428778.1| - 0.72 9.8 5.9 1.1 9.2 0.0 3.0 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) MazE_antitoxin PF04014.18 gi|218884396|ref|YP_002428778.1| - 0.76 9.8 0.0 0.76 9.8 0.0 2.9 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin Prok-RING_1 PF14446.6 gi|218884396|ref|YP_002428778.1| - 1.1 9.2 9.1 2.1 8.3 0.5 2.6 2 1 1 3 3 3 0 Prokaryotic RING finger family 1 GFA PF04828.14 gi|218884396|ref|YP_002428778.1| - 2 8.8 5.1 26 5.3 0.3 3.3 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf_C2H2_13 PF18508.1 gi|218884396|ref|YP_002428778.1| - 2.6 7.7 7.1 18 5.0 0.3 3.2 3 0 0 3 3 3 0 Zinc finger domain Zn-ribbon_8 PF09723.10 gi|218884396|ref|YP_002428778.1| - 5.9 7.1 7.8 20 5.4 4.7 2.9 2 1 0 2 2 2 0 Zinc ribbon domain C1_1 PF00130.22 gi|218884396|ref|YP_002428778.1| - 6.9 6.6 7.4 0.56 10.1 1.1 2.3 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) eIF-1a PF01176.19 gi|218884397|ref|YP_002428779.1| - 4.5e-17 61.6 0.4 6e-17 61.2 0.4 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.22 gi|218884398|ref|YP_002428780.1| - 6.8e-59 198.6 0.0 9.5e-59 198.2 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|218884398|ref|YP_002428780.1| - 2.2e-06 27.8 0.1 0.0035 17.3 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|218884398|ref|YP_002428780.1| - 2.1e-05 24.0 0.0 0.0021 17.4 0.0 2.3 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|218884398|ref|YP_002428780.1| - 0.00051 19.5 0.1 0.001 18.5 0.1 1.6 1 1 0 1 1 1 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|218884398|ref|YP_002428780.1| - 0.034 12.9 0.1 0.049 12.4 0.1 1.2 1 0 0 1 1 1 0 Fungal protein kinase Helicase_IV_N PF12462.8 gi|218884398|ref|YP_002428780.1| - 0.052 13.5 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal KH_1 PF00013.29 gi|218884399|ref|YP_002428781.1| - 1.9e-07 30.8 0.1 0.0032 17.2 0.0 2.3 2 0 0 2 2 2 2 KH domain EamA PF00892.20 gi|218884400|ref|YP_002428782.1| - 1.7e-18 67.1 20.4 1.9e-18 66.9 20.4 1.0 1 0 0 1 1 1 1 EamA-like transporter family Multi_Drug_Res PF00893.19 gi|218884400|ref|YP_002428782.1| - 0.028 15.1 4.1 0.028 15.1 4.1 2.2 1 1 0 2 2 2 0 Small Multidrug Resistance protein TssN PF17555.2 gi|218884400|ref|YP_002428782.1| - 8.7 5.6 12.8 10 5.4 12.8 1.2 1 0 0 1 1 1 0 Type VI secretion system, TssN TrkH PF02386.16 gi|218884401|ref|YP_002428783.1| - 9.7e-49 166.1 26.7 5.9e-25 87.7 12.3 2.1 1 1 1 2 2 2 2 Cation transport protein YesK PF14150.6 gi|218884401|ref|YP_002428783.1| - 0.0057 16.8 1.9 0.0057 16.8 1.9 4.5 4 1 1 5 5 5 1 YesK-like protein PHBC_N PF12551.8 gi|218884401|ref|YP_002428783.1| - 0.1 12.4 0.1 4.7 7.1 0.0 2.5 2 0 0 2 2 2 0 Poly-beta-hydroxybutyrate polymerase N terminal DctM PF06808.12 gi|218884402|ref|YP_002428784.1| - 4.6e-76 256.3 59.1 5.5e-76 256.0 59.1 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component DctQ PF04290.12 gi|218884403|ref|YP_002428785.1| - 1.1e-18 67.4 7.2 1.1e-18 67.4 7.2 1.9 1 1 1 2 2 2 2 Tripartite ATP-independent periplasmic transporters, DctQ component DctP PF03480.13 gi|218884404|ref|YP_002428786.1| - 7.6e-53 179.7 0.0 1e-52 179.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 adh_short_C2 PF13561.6 gi|218884405|ref|YP_002428787.1| - 1.5e-67 227.5 0.0 1.9e-67 227.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|218884405|ref|YP_002428787.1| - 8.1e-64 214.7 0.0 9.7e-64 214.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|218884405|ref|YP_002428787.1| - 1.6e-13 51.0 0.0 2.1e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|218884405|ref|YP_002428787.1| - 0.0046 16.1 0.1 0.0068 15.6 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Shikimate_DH PF01488.20 gi|218884405|ref|YP_002428787.1| - 0.012 15.6 0.3 0.027 14.5 0.2 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.21 gi|218884405|ref|YP_002428787.1| - 0.014 15.5 0.4 0.024 14.7 0.4 1.4 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|218884405|ref|YP_002428787.1| - 0.032 13.6 0.2 0.11 11.8 0.0 2.0 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3Beta_HSD PF01073.19 gi|218884405|ref|YP_002428787.1| - 0.059 12.4 0.1 0.075 12.0 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Sacchrp_dh_NADP PF03435.18 gi|218884405|ref|YP_002428787.1| - 0.14 12.4 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|218884406|ref|YP_002428788.1| - 4.1e-44 150.9 0.0 5.1e-44 150.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|218884406|ref|YP_002428788.1| - 8.8e-36 124.0 0.2 1e-34 120.4 0.2 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|218884406|ref|YP_002428788.1| - 1.1e-23 83.8 0.0 1.2e-23 83.6 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|218884406|ref|YP_002428788.1| - 1.8e-23 83.0 0.1 4.5e-23 81.7 0.1 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|218884406|ref|YP_002428788.1| - 2.4e-16 59.8 2.1 5.5e-15 55.3 2.1 2.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|218884406|ref|YP_002428788.1| - 4.5e-12 46.2 0.0 7.7e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|218884406|ref|YP_002428788.1| - 2.9e-11 43.0 2.1 1.9e-07 30.5 0.0 2.8 2 1 1 3 3 3 2 Male sterility protein adh_short PF00106.25 gi|218884406|ref|YP_002428788.1| - 3.2e-05 23.5 0.0 4.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|218884406|ref|YP_002428788.1| - 0.00034 20.6 1.3 0.0055 16.6 1.3 2.3 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|218884406|ref|YP_002428788.1| - 0.021 14.4 0.5 0.083 12.4 0.1 2.2 2 1 0 2 2 2 0 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|218884406|ref|YP_002428788.1| - 0.052 13.8 0.1 0.093 13.0 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|218884406|ref|YP_002428788.1| - 0.081 13.5 0.0 0.19 12.3 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent HTH_10 PF04967.12 gi|218884407|ref|YP_002428789.1| - 7.6e-12 44.8 0.2 1.7e-11 43.7 0.2 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|218884407|ref|YP_002428789.1| - 0.004 16.6 0.2 0.0065 16.0 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|218884407|ref|YP_002428789.1| - 0.15 12.0 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 MarR family 2-Hacid_dh_C PF02826.19 gi|218884408|ref|YP_002428790.1| - 4.9e-58 195.4 0.0 7.3e-58 194.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|218884408|ref|YP_002428790.1| - 1.7e-25 89.2 0.0 2.7e-25 88.6 0.0 1.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|218884408|ref|YP_002428790.1| - 4.7e-08 33.4 0.0 1.2e-07 32.1 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.15 gi|218884408|ref|YP_002428790.1| - 5.4e-05 23.6 0.1 0.00045 20.6 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|218884408|ref|YP_002428790.1| - 0.00023 21.7 0.1 0.00081 19.9 0.0 2.0 3 0 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|218884408|ref|YP_002428790.1| - 0.0004 20.6 0.0 0.0035 17.6 0.0 2.4 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|218884408|ref|YP_002428790.1| - 0.0015 19.3 0.0 0.0036 18.1 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.6 gi|218884408|ref|YP_002428790.1| - 0.0019 18.6 0.1 0.013 15.9 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|218884408|ref|YP_002428790.1| - 0.014 15.7 0.0 0.049 13.9 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain PNP_UDP_1 PF01048.20 gi|218884408|ref|YP_002428790.1| - 0.063 12.5 0.0 0.15 11.3 0.0 1.6 1 0 0 1 1 1 0 Phosphorylase superfamily IlvN PF07991.12 gi|218884408|ref|YP_002428790.1| - 0.064 12.8 0.0 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|218884408|ref|YP_002428790.1| - 0.086 12.9 0.1 0.3 11.1 0.0 2.0 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DHDPS PF00701.22 gi|218884409|ref|YP_002428791.1| - 6e-53 179.4 0.0 6.6e-53 179.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HSDR_N_2 PF13588.6 gi|218884409|ref|YP_002428791.1| - 0.013 15.4 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) FGGY_N PF00370.21 gi|218884410|ref|YP_002428792.1| - 3.6e-30 105.3 0.0 5e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|218884410|ref|YP_002428792.1| - 9.7e-09 35.2 0.0 1.5e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain tRNA-synt_2c PF01411.19 gi|218884411|ref|YP_002428793.1| - 2.8e-93 313.3 0.0 2.2e-50 171.7 0.0 2.2 1 1 1 2 2 2 2 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|218884411|ref|YP_002428793.1| - 9e-11 41.7 0.1 2.8e-10 40.1 0.1 2.0 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|218884411|ref|YP_002428793.1| - 0.00017 20.9 0.1 0.0003 20.1 0.1 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit CoA_binding_3 PF13727.6 gi|218884411|ref|YP_002428793.1| - 0.2 11.7 0.4 0.66 10.0 0.0 2.0 2 0 0 2 2 2 0 CoA-binding domain Ribosomal_60s PF00428.19 gi|218884412|ref|YP_002428794.1| - 2e-16 60.4 14.0 2.3e-16 60.2 14.0 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|218884412|ref|YP_002428794.1| - 0.0086 16.1 5.6 0.22 11.6 0.1 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain PhetRS_B1 PF18262.1 gi|218884412|ref|YP_002428794.1| - 0.025 14.8 0.0 0.045 14.0 0.0 1.4 1 0 0 1 1 1 0 Phe-tRNA synthetase beta subunit B1 domain GGN PF15685.5 gi|218884412|ref|YP_002428794.1| - 0.027 13.5 0.2 0.027 13.5 0.2 1.0 1 0 0 1 1 1 0 Gametogenetin EF-hand_14 PF17959.1 gi|218884412|ref|YP_002428794.1| - 0.057 13.8 0.1 0.094 13.1 0.0 1.4 2 0 0 2 2 2 0 EF-hand domain Type2_restr_D3 PF16902.5 gi|218884412|ref|YP_002428794.1| - 0.12 12.3 0.1 0.18 11.8 0.1 1.3 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain Hemocyanin_C PF03723.14 gi|218884412|ref|YP_002428794.1| - 0.24 10.7 0.0 0.27 10.5 0.0 1.1 1 0 0 1 1 1 0 Hemocyanin, ig-like domain Ribosomal_L10 PF00466.20 gi|218884413|ref|YP_002428795.1| - 8.8e-23 80.3 0.1 8.8e-23 80.3 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|218884413|ref|YP_002428795.1| - 6.8e-16 58.0 0.1 2.3e-15 56.3 0.0 1.9 2 0 0 2 2 2 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|218884413|ref|YP_002428795.1| - 0.0062 17.1 5.0 0.013 16.1 5.0 1.7 1 0 0 1 1 1 1 60s Acidic ribosomal protein Ribosomal_L1 PF00687.21 gi|218884414|ref|YP_002428796.1| - 8.6e-36 123.6 0.0 9.9e-36 123.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.14 gi|218884415|ref|YP_002428797.1| - 9.5e-24 83.0 0.7 1.7e-23 82.2 0.7 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|218884415|ref|YP_002428797.1| - 1.3e-19 70.5 0.8 1.9e-19 70.0 0.8 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.13 gi|218884416|ref|YP_002428798.1| - 3.5e-16 58.9 0.1 4.9e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|218884416|ref|YP_002428798.1| - 6.2e-07 29.2 0.1 9.4e-06 25.4 0.1 2.3 2 0 0 2 2 2 1 KOW motif NusG PF02357.19 gi|218884416|ref|YP_002428798.1| - 0.06 13.9 0.0 0.095 13.2 0.0 1.3 1 0 0 1 1 1 0 Transcription termination factor nusG SecE PF00584.20 gi|218884417|ref|YP_002428799.1| - 7e-05 22.7 0.2 8.1e-05 22.5 0.2 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex SRP54 PF00448.22 gi|218884418|ref|YP_002428800.1| - 6.8e-69 231.4 0.0 9e-69 231.0 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|218884418|ref|YP_002428800.1| - 1.9e-06 28.0 2.8 1.9e-06 28.0 2.8 1.9 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain cobW PF02492.19 gi|218884418|ref|YP_002428800.1| - 4.6e-05 23.1 0.2 0.00037 20.1 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|218884418|ref|YP_002428800.1| - 0.0003 20.8 0.2 0.0018 18.3 0.0 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|218884418|ref|YP_002428800.1| - 0.00048 19.9 0.0 0.00083 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.6 gi|218884418|ref|YP_002428800.1| - 0.0012 18.8 0.2 0.0044 17.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|218884418|ref|YP_002428800.1| - 0.0026 16.8 0.2 0.045 12.7 0.0 2.2 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|218884418|ref|YP_002428800.1| - 0.0042 17.4 0.8 0.6 10.4 0.2 3.1 1 1 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|218884418|ref|YP_002428800.1| - 0.0051 16.5 0.7 0.22 11.2 0.0 2.9 3 0 0 3 3 3 1 Thymidylate kinase AAA_24 PF13479.6 gi|218884418|ref|YP_002428800.1| - 0.0087 15.8 0.1 0.021 14.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|218884418|ref|YP_002428800.1| - 0.018 14.3 0.1 0.041 13.2 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin MMR_HSR1 PF01926.23 gi|218884418|ref|YP_002428800.1| - 0.022 14.8 0.7 0.13 12.3 0.7 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|218884418|ref|YP_002428800.1| - 0.022 14.9 0.0 0.043 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|218884418|ref|YP_002428800.1| - 0.026 13.7 1.3 0.037 13.2 0.1 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_19 PF13245.6 gi|218884418|ref|YP_002428800.1| - 0.029 14.7 0.0 0.05 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|218884418|ref|YP_002428800.1| - 0.033 14.1 1.0 0.31 10.9 0.2 2.4 1 1 1 2 2 2 0 NTPase ATP_bind_1 PF03029.17 gi|218884418|ref|YP_002428800.1| - 0.035 13.9 0.2 0.18 11.5 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|218884418|ref|YP_002428800.1| - 0.07 13.6 0.0 0.19 12.2 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TPP_enzyme_M PF00205.22 gi|218884418|ref|YP_002428800.1| - 0.081 12.7 0.0 0.66 9.7 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Arf PF00025.21 gi|218884418|ref|YP_002428800.1| - 0.1 12.1 1.1 0.34 10.3 0.1 2.2 3 0 0 3 3 3 0 ADP-ribosylation factor family DAP3 PF10236.9 gi|218884418|ref|YP_002428800.1| - 0.12 11.5 0.0 0.27 10.4 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_17 PF13207.6 gi|218884418|ref|YP_002428800.1| - 0.13 12.7 0.2 0.36 11.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|218884418|ref|YP_002428800.1| - 0.15 12.4 0.8 0.53 10.6 0.2 2.2 2 1 0 2 2 2 0 AAA ATPase domain DUF3510 PF12022.8 gi|218884418|ref|YP_002428800.1| - 0.22 11.9 0.3 0.48 10.8 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3510) Prefoldin PF02996.17 gi|218884419|ref|YP_002428801.1| - 7.2e-13 48.5 0.1 9.3e-13 48.1 0.1 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|218884419|ref|YP_002428801.1| - 1.1e-06 28.6 0.5 0.0063 16.4 0.2 2.1 2 0 0 2 2 2 2 Prefoldin subunit BLI1 PF17324.2 gi|218884419|ref|YP_002428801.1| - 0.0077 16.9 0.1 0.023 15.4 0.0 1.8 2 0 0 2 2 2 1 BLOC-1 interactor 1 Holin_BhlA PF10960.8 gi|218884419|ref|YP_002428801.1| - 0.022 14.7 0.1 0.043 13.8 0.1 1.5 1 0 0 1 1 1 0 BhlA holin family Spc7 PF08317.11 gi|218884419|ref|YP_002428801.1| - 0.061 12.2 0.6 0.52 9.1 0.0 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein Gon7 PF08738.10 gi|218884419|ref|YP_002428801.1| - 0.09 12.9 0.2 0.15 12.1 0.2 1.4 1 0 0 1 1 1 0 Gon7 family Ribosomal_L18A PF01775.17 gi|218884420|ref|YP_002428802.1| - 2.3e-12 47.1 0.7 3.5e-12 46.5 0.7 1.3 1 1 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Imm2 PF14426.6 gi|218884420|ref|YP_002428802.1| - 0.083 13.0 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 Immunity protein Imm2 eIF-6 PF01912.18 gi|218884421|ref|YP_002428803.1| - 2.3e-56 190.3 0.6 2.8e-56 190.1 0.6 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|218884422|ref|YP_002428804.1| - 3e-12 46.6 0.7 3.7e-12 46.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|218884423|ref|YP_002428805.1| - 1.6e-16 59.7 7.3 1.8e-16 59.5 7.3 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein DUF4224 PF13986.6 gi|218884423|ref|YP_002428805.1| - 0.068 13.1 0.3 0.083 12.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) dsDNA_bind PF01984.20 gi|218884424|ref|YP_002428806.1| - 1.5e-23 83.1 11.1 3.5e-23 82.0 11.1 1.5 1 1 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|218884424|ref|YP_002428806.1| - 0.0017 17.7 5.4 0.0022 17.3 5.4 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 ClpB_D2-small PF10431.9 gi|218884424|ref|YP_002428806.1| - 0.013 15.5 3.9 1.2 9.3 1.2 2.2 2 0 0 2 2 2 0 C-terminal, D2-small domain, of ClpB protein DUF4706 PF15797.5 gi|218884424|ref|YP_002428806.1| - 0.032 14.7 0.7 0.04 14.4 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4706) Herpes_UL14 PF03580.14 gi|218884424|ref|YP_002428806.1| - 0.12 12.6 6.5 0.067 13.4 4.5 1.6 1 1 1 2 2 2 0 Herpesvirus UL14-like protein DUF2857 PF11198.8 gi|218884424|ref|YP_002428806.1| - 0.27 11.0 4.9 5.4 6.8 1.8 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2857) Ribosomal_S19e PF01090.19 gi|218884425|ref|YP_002428807.1| - 9.1e-51 171.2 0.0 1e-50 171.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|218884425|ref|YP_002428807.1| - 3.8e-05 23.5 0.9 0.00063 19.6 0.9 2.3 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain RuvB_C PF05491.13 gi|218884425|ref|YP_002428807.1| - 0.0016 18.3 0.1 0.0086 15.9 0.1 2.0 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_20 PF12840.7 gi|218884425|ref|YP_002428807.1| - 0.026 14.6 0.3 0.27 11.3 0.1 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|218884425|ref|YP_002428807.1| - 0.037 13.8 0.0 2 8.3 0.0 2.7 3 0 0 3 3 3 0 IclR helix-turn-helix domain MarR PF01047.22 gi|218884425|ref|YP_002428807.1| - 0.14 12.1 0.3 2.3 8.2 0.2 2.5 3 0 0 3 3 3 0 MarR family CRS1_YhbY PF01985.21 gi|218884426|ref|YP_002428808.1| - 2.9e-12 46.6 0.5 3.5e-12 46.3 0.5 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.16 gi|218884427|ref|YP_002428809.1| - 3e-15 56.3 0.0 3.7e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain EMG1 PF03587.14 gi|218884428|ref|YP_002428810.1| - 8.4e-50 169.1 0.0 9.5e-50 169.0 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase NRDD PF13597.6 gi|218884429|ref|YP_002428811.1| - 4.5e-144 481.3 0.0 1.3e-80 271.8 0.0 2.1 2 0 0 2 2 2 2 Anaerobic ribonucleoside-triphosphate reductase Intein_splicing PF14890.6 gi|218884429|ref|YP_002428811.1| - 2e-13 50.4 0.1 3.5e-13 49.7 0.1 1.4 1 0 0 1 1 1 1 Intein splicing domain HypA PF01155.19 gi|218884429|ref|YP_002428811.1| - 0.014 15.4 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|218884429|ref|YP_002428811.1| - 0.026 14.2 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 GARS_C PF02843.16 gi|218884429|ref|YP_002428811.1| - 0.069 13.5 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, C domain zinc_ribbon_2 PF13240.6 gi|218884429|ref|YP_002428811.1| - 0.85 9.4 7.1 9 6.2 7.2 2.3 1 1 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.8 gi|218884429|ref|YP_002428811.1| - 1.7 8.6 3.9 5.1 7.1 3.9 1.9 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|218884429|ref|YP_002428811.1| - 2.9 7.4 7.8 57 3.3 8.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Radical_SAM PF04055.21 gi|218884430|ref|YP_002428812.1| - 3.8e-18 66.4 0.0 5.5e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|218884430|ref|YP_002428812.1| - 2.8e-09 37.4 0.0 4.8e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|218884430|ref|YP_002428812.1| - 1.1e-06 28.7 0.0 2.4e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4489 PF14879.6 gi|218884430|ref|YP_002428812.1| - 0.031 14.4 0.1 3.1 7.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4489) Thy1 PF02511.15 gi|218884431|ref|YP_002428813.1| - 2.8e-56 190.3 0.0 3.7e-56 189.9 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Fe_dep_repress PF01325.19 gi|218884432|ref|YP_002428814.1| - 2.7e-06 27.5 0.1 5.4e-05 23.3 0.0 2.6 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|218884432|ref|YP_002428814.1| - 2e-05 24.4 0.1 4e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|218884432|ref|YP_002428814.1| - 0.00017 21.3 0.0 0.0006 19.6 0.0 2.0 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_46 PF15977.5 gi|218884432|ref|YP_002428814.1| - 0.00026 20.9 0.0 0.00052 20.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA binding HTH_23 PF13384.6 gi|218884432|ref|YP_002428814.1| - 0.00032 20.4 0.0 0.0011 18.7 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|218884432|ref|YP_002428814.1| - 0.00042 20.1 0.0 0.00094 19.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_7 PF02796.15 gi|218884432|ref|YP_002428814.1| - 0.00043 20.3 0.1 0.00099 19.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 gi|218884432|ref|YP_002428814.1| - 0.00044 20.3 0.1 0.0013 18.8 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|218884432|ref|YP_002428814.1| - 0.00067 19.6 0.0 0.0022 17.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DUF4423 PF14394.6 gi|218884432|ref|YP_002428814.1| - 0.0035 17.1 0.0 0.0057 16.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_11 PF08279.12 gi|218884432|ref|YP_002428814.1| - 0.0071 16.3 0.0 0.022 14.7 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|218884432|ref|YP_002428814.1| - 0.0084 15.9 0.3 0.025 14.5 0.1 1.9 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|218884432|ref|YP_002428814.1| - 0.012 15.6 0.1 0.038 14.0 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.23 gi|218884432|ref|YP_002428814.1| - 0.015 15.1 0.1 0.058 13.2 0.1 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Hormone_3 PF00159.18 gi|218884432|ref|YP_002428814.1| - 0.015 15.3 0.0 0.037 14.1 0.0 1.6 1 0 0 1 1 1 0 Pancreatic hormone peptide DprA_WH PF17782.1 gi|218884432|ref|YP_002428814.1| - 0.02 15.0 0.0 0.047 13.8 0.0 1.6 1 0 0 1 1 1 0 DprA winged helix domain HTH_29 PF13551.6 gi|218884432|ref|YP_002428814.1| - 0.025 14.6 0.0 0.06 13.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Mrr_N PF14338.6 gi|218884432|ref|YP_002428814.1| - 0.028 14.5 0.0 0.075 13.2 0.0 1.8 2 0 0 2 2 1 0 Mrr N-terminal domain Terminase_5 PF06056.12 gi|218884432|ref|YP_002428814.1| - 0.034 14.0 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_6 PF01418.17 gi|218884432|ref|YP_002428814.1| - 0.035 14.1 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family PadR PF03551.14 gi|218884432|ref|YP_002428814.1| - 0.036 14.0 0.1 0.088 12.8 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|218884432|ref|YP_002428814.1| - 0.043 13.4 0.0 0.092 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|218884432|ref|YP_002428814.1| - 0.044 14.1 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DUF3791 PF12668.7 gi|218884432|ref|YP_002428814.1| - 0.099 12.7 1.4 0.36 10.9 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3791) HTH_22 PF13309.6 gi|218884432|ref|YP_002428814.1| - 0.12 12.5 0.1 0.33 11.1 0.1 1.8 1 0 0 1 1 1 0 HTH domain Arabinose_Isome PF02610.15 gi|218884432|ref|YP_002428814.1| - 0.16 11.2 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 L-arabinose isomerase SM-ATX PF14438.6 gi|218884435|ref|YP_002428817.1| - 0.0016 18.6 0.0 0.0016 18.6 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|218884435|ref|YP_002428817.1| - 0.0063 16.6 0.1 0.0084 16.2 0.1 1.2 1 0 0 1 1 1 1 RimP C-terminal SH3 domain DUF2642 PF10842.8 gi|218884435|ref|YP_002428817.1| - 0.013 15.3 0.0 0.016 15.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2642) LSM PF01423.22 gi|218884435|ref|YP_002428817.1| - 0.025 14.2 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 LSM domain Hfq PF17209.3 gi|218884435|ref|YP_002428817.1| - 0.09 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Hfq protein MMR_HSR1 PF01926.23 gi|218884436|ref|YP_002428818.1| - 0.0076 16.3 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|218884436|ref|YP_002428818.1| - 0.15 11.8 0.1 2.8 7.8 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain PriX PF18689.1 gi|218884437|ref|YP_002428819.1| - 4.2e-41 139.3 0.5 4.2e-41 139.3 0.5 1.6 2 0 0 2 2 2 1 Primase X TraB PF01963.17 gi|218884437|ref|YP_002428819.1| - 0.051 13.5 0.0 0.073 13.0 0.0 1.1 1 0 0 1 1 1 0 TraB family DUF4272 PF14094.6 gi|218884440|ref|YP_002428822.1| - 0.011 15.0 0.0 0.011 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4272) DUF4287 PF14117.6 gi|218884440|ref|YP_002428822.1| - 0.031 14.4 0.0 0.062 13.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) Phage_integr_3 PF16795.5 gi|218884441|ref|YP_002428823.1| - 3.2e-20 72.6 3.7 2.2e-17 63.4 0.1 3.1 2 1 0 2 2 2 2 Archaeal phage integrase HTH_31 PF13560.6 gi|218884441|ref|YP_002428823.1| - 0.0087 16.4 0.1 9.8 6.6 0.0 3.0 3 0 0 3 3 3 2 Helix-turn-helix domain Peptidase_S46 PF10459.9 gi|218884441|ref|YP_002428823.1| - 0.044 12.4 0.0 0.057 12.1 0.0 1.1 1 0 0 1 1 1 0 Peptidase S46 HTH_3 PF01381.22 gi|218884441|ref|YP_002428823.1| - 0.099 12.7 0.0 7.9 6.6 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix DUF2244 PF10003.9 gi|218884442|ref|YP_002428824.1| - 0.27 10.9 2.3 0.37 10.5 2.3 1.2 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) PDGLE PF13190.6 gi|218884442|ref|YP_002428824.1| - 0.29 11.0 2.0 11 6.0 0.3 2.3 2 1 0 2 2 2 0 PDGLE domain DUF2207 PF09972.9 gi|218884442|ref|YP_002428824.1| - 6.1 5.5 5.3 7.9 5.1 5.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SfsA PF03749.13 gi|218884443|ref|YP_002428825.1| - 2.5e-26 92.2 0.0 3.3e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|218884443|ref|YP_002428825.1| - 8.1e-14 51.5 0.2 1.3e-13 50.9 0.2 1.3 1 0 0 1 1 1 1 SfsA N-terminal OB domain NERD PF08378.11 gi|218884443|ref|YP_002428825.1| - 0.078 13.4 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 Nuclease-related domain ADH_N PF08240.12 gi|218884444|ref|YP_002428826.1| - 7.4e-35 119.1 0.9 1.3e-34 118.3 0.9 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|218884444|ref|YP_002428826.1| - 3.2e-06 27.2 0.0 9.2e-06 25.7 0.0 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|218884444|ref|YP_002428826.1| - 0.0019 19.3 0.1 0.0034 18.5 0.1 1.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|218884444|ref|YP_002428826.1| - 0.027 13.8 0.1 0.094 12.1 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GT87 PF09594.10 gi|218884445|ref|YP_002428827.1| - 0.0029 17.4 23.4 0.0029 17.4 23.4 2.4 2 1 0 2 2 2 1 Glycosyltransferase family 87 Glycos_transf_1 PF00534.20 gi|218884446|ref|YP_002428828.1| - 1.2e-23 83.5 0.0 2.1e-23 82.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|218884446|ref|YP_002428828.1| - 3.3e-13 50.2 0.0 6.5e-13 49.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|218884446|ref|YP_002428828.1| - 1.7e-07 31.4 0.1 4.8e-07 29.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 ALG11_N PF15924.5 gi|218884446|ref|YP_002428828.1| - 8e-05 22.8 0.7 0.00015 21.9 0.2 1.6 2 0 0 2 2 2 1 ALG11 mannosyltransferase N-terminus Glyco_trans_1_2 PF13524.6 gi|218884446|ref|YP_002428828.1| - 0.00055 20.3 0.0 0.0013 19.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 dUTPase PF00692.19 gi|218884447|ref|YP_002428829.1| - 4.5e-16 58.7 0.0 7.6e-16 58.0 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|218884447|ref|YP_002428829.1| - 0.0012 17.7 0.0 0.0028 16.5 0.0 1.6 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) NTP_transferase PF00483.23 gi|218884448|ref|YP_002428830.1| - 1e-36 126.8 0.0 1.2e-36 126.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|218884448|ref|YP_002428830.1| - 3.3e-12 47.0 0.0 5.4e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|218884448|ref|YP_002428830.1| - 0.012 15.4 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PAC2 PF09754.9 gi|218884448|ref|YP_002428830.1| - 0.096 12.7 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 PAC2 family Peptidase_M54 PF07998.11 gi|218884449|ref|YP_002428831.1| - 7.3e-32 110.9 0.1 8.2e-32 110.8 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|218884449|ref|YP_002428831.1| - 9.3e-05 22.3 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_4 PF13583.6 gi|218884449|ref|YP_002428831.1| - 0.0099 15.5 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|218884449|ref|YP_002428831.1| - 0.01 16.4 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M43 PF05572.13 gi|218884449|ref|YP_002428831.1| - 0.012 15.6 0.1 0.02 14.8 0.1 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Metallopep PF12044.8 gi|218884449|ref|YP_002428831.1| - 0.027 13.1 0.3 0.038 12.6 0.3 1.1 1 0 0 1 1 1 0 Putative peptidase family DUF4953 PF16313.5 gi|218884449|ref|YP_002428831.1| - 0.031 13.5 0.1 0.061 12.5 0.0 1.4 2 0 0 2 2 2 0 Met-zincin Reprolysin_5 PF13688.6 gi|218884449|ref|YP_002428831.1| - 0.075 13.2 0.0 0.093 12.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M66 PF10462.9 gi|218884449|ref|YP_002428831.1| - 0.083 11.8 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Archease PF01951.16 gi|218884450|ref|YP_002428832.1| - 1.3e-35 122.6 0.0 1.5e-35 122.4 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Mac PF12464.8 gi|218884450|ref|YP_002428832.1| - 0.12 12.7 0.1 0.24 11.7 0.1 1.5 1 0 0 1 1 1 0 Maltose acetyltransferase RuBisCO_large PF00016.20 gi|218884451|ref|YP_002428833.1| - 4.2e-97 324.9 0.0 5.1e-97 324.7 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|218884451|ref|YP_002428833.1| - 8.5e-47 158.3 0.0 1.7e-46 157.3 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF697 PF05128.12 gi|218884451|ref|YP_002428833.1| - 0.089 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF697) LigA PF07746.11 gi|218884451|ref|YP_002428833.1| - 0.18 12.0 0.0 0.6 10.3 0.0 1.8 2 0 0 2 2 2 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit SbcCD_C PF13558.6 gi|218884452|ref|YP_002428834.1| - 0.022 15.0 0.0 0.031 14.5 0.0 1.2 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Peptidase_C15 PF01470.17 gi|218884453|ref|YP_002428835.1| - 4.2e-08 33.6 0.1 4.7e-08 33.5 0.1 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Peptidase_S8 PF00082.22 gi|218884455|ref|YP_002428837.1| - 2e-51 175.1 10.5 2.6e-51 174.7 10.5 1.1 1 0 0 1 1 1 1 Subtilase family Glyco_hydro_80 PF13647.6 gi|218884455|ref|YP_002428837.1| - 0.0019 17.7 1.8 0.0022 17.5 0.2 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase family 80 of chitosanase A CspB_prodomain PF18425.1 gi|218884455|ref|YP_002428837.1| - 0.013 15.5 0.1 0.026 14.5 0.1 1.4 1 0 0 1 1 1 0 Csp protease B prodomain CcmD PF04995.14 gi|218884456|ref|YP_002428838.1| - 0.086 12.9 1.2 0.086 12.9 1.2 1.8 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) MTS PF05175.14 gi|218884457|ref|YP_002428839.1| - 1.3e-33 115.9 0.0 1.5e-33 115.8 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|218884457|ref|YP_002428839.1| - 6.5e-13 48.7 0.0 8.1e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|218884457|ref|YP_002428839.1| - 5.3e-11 42.5 0.0 7e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|218884457|ref|YP_002428839.1| - 3.7e-08 34.0 0.0 5.6e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|218884457|ref|YP_002428839.1| - 6.1e-08 32.7 0.0 1.2e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|218884457|ref|YP_002428839.1| - 9.1e-08 32.1 0.0 1e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|218884457|ref|YP_002428839.1| - 3.9e-06 27.5 0.0 5.4e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|218884457|ref|YP_002428839.1| - 9.8e-06 25.4 0.0 1.4e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_11 PF08241.12 gi|218884457|ref|YP_002428839.1| - 6.1e-05 23.6 0.0 8.7e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|218884457|ref|YP_002428839.1| - 0.00031 20.4 0.0 0.00045 19.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|218884457|ref|YP_002428839.1| - 0.0005 19.9 0.0 0.00059 19.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|218884457|ref|YP_002428839.1| - 0.0076 15.9 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|218884457|ref|YP_002428839.1| - 0.0093 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 TRM PF02005.16 gi|218884457|ref|YP_002428839.1| - 0.0097 15.1 0.0 0.012 14.8 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_2 PF00891.18 gi|218884457|ref|YP_002428839.1| - 0.072 12.4 0.0 0.097 12.0 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain GidB PF02527.15 gi|218884457|ref|YP_002428839.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G TFIID-18kDa PF02269.16 gi|218884457|ref|YP_002428839.1| - 0.19 11.7 0.0 5.1 7.2 0.0 2.2 1 1 1 2 2 2 0 Transcription initiation factor IID, 18kD subunit TruB_N PF01509.18 gi|218884458|ref|YP_002428840.1| - 4.3e-22 79.1 0.9 6.4e-15 55.8 0.1 3.6 2 1 1 3 3 3 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|218884458|ref|YP_002428840.1| - 1.4e-21 76.4 0.3 2.9e-21 75.4 0.3 1.6 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|218884458|ref|YP_002428840.1| - 3.7e-18 65.2 0.8 6.4e-18 64.5 0.8 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|218884458|ref|YP_002428840.1| - 8.6e-17 61.0 0.2 1.7e-16 60.0 0.2 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|218884458|ref|YP_002428840.1| - 0.062 13.6 0.1 0.72 10.2 0.0 2.4 2 0 0 2 2 2 0 UPF0113 PUA domain Ribosomal_L14e PF01929.17 gi|218884459|ref|YP_002428841.1| - 0.00034 21.1 0.0 0.00048 20.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.29 gi|218884459|ref|YP_002428841.1| - 0.00046 20.0 0.2 0.00046 20.0 0.2 1.6 2 0 0 2 2 2 1 KOW motif Cytidylate_kin2 PF13189.6 gi|218884460|ref|YP_002428842.1| - 2.2e-17 63.8 0.1 3.6e-15 56.6 0.1 2.1 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|218884460|ref|YP_002428842.1| - 4.7e-17 62.7 0.0 7.5e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|218884460|ref|YP_002428842.1| - 7.1e-12 46.0 0.0 1.2e-11 45.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|218884460|ref|YP_002428842.1| - 1.4e-08 34.7 0.4 5.5e-05 23.0 0.1 2.1 1 1 0 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|218884460|ref|YP_002428842.1| - 2.2e-07 31.1 0.0 6.5e-07 29.6 0.0 1.8 2 0 0 2 2 2 1 Adenylate kinase AAA PF00004.29 gi|218884460|ref|YP_002428842.1| - 3.4e-05 24.3 0.0 8.6e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|218884460|ref|YP_002428842.1| - 4.3e-05 23.8 0.0 0.0001 22.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|218884460|ref|YP_002428842.1| - 0.0011 19.2 0.0 0.0023 18.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain SKI PF01202.22 gi|218884460|ref|YP_002428842.1| - 0.0014 18.8 0.1 0.0092 16.1 0.1 2.0 1 1 0 1 1 1 1 Shikimate kinase PRK PF00485.18 gi|218884460|ref|YP_002428842.1| - 0.0087 15.8 0.4 0.32 10.7 0.1 2.2 1 1 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RuvB_N PF05496.12 gi|218884460|ref|YP_002428842.1| - 0.011 15.5 0.0 0.14 11.9 0.0 2.2 1 1 1 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|218884460|ref|YP_002428842.1| - 0.015 15.5 0.0 0.029 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|218884460|ref|YP_002428842.1| - 0.032 14.1 0.0 0.069 13.1 0.0 1.6 1 1 0 1 1 1 0 NTPase AAA_24 PF13479.6 gi|218884460|ref|YP_002428842.1| - 0.046 13.4 0.1 0.08 12.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|218884460|ref|YP_002428842.1| - 0.053 12.9 0.0 0.094 12.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|218884460|ref|YP_002428842.1| - 0.056 13.8 0.0 0.11 12.9 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|218884460|ref|YP_002428842.1| - 0.059 13.4 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Hydin_ADK PF17213.3 gi|218884460|ref|YP_002428842.1| - 0.065 13.5 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain KTI12 PF08433.10 gi|218884460|ref|YP_002428842.1| - 0.075 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ANTAR PF03861.14 gi|218884460|ref|YP_002428842.1| - 0.11 12.4 0.0 8.4 6.3 0.0 2.9 3 0 0 3 3 3 0 ANTAR domain SRP54 PF00448.22 gi|218884460|ref|YP_002428842.1| - 0.12 11.9 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|218884460|ref|YP_002428842.1| - 0.17 11.9 0.1 0.65 10.0 0.0 2.0 2 1 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Ribosomal_L34e PF01199.18 gi|218884461|ref|YP_002428843.1| - 3e-28 98.0 0.5 3.3e-28 97.8 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e zf-C4_ClpX PF06689.13 gi|218884461|ref|YP_002428843.1| - 0.007 16.2 0.1 0.99 9.3 0.0 2.3 2 0 0 2 2 2 2 ClpX C4-type zinc finger DZR PF12773.7 gi|218884461|ref|YP_002428843.1| - 0.038 14.0 0.1 0.057 13.5 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF4428 PF14471.6 gi|218884461|ref|YP_002428843.1| - 0.074 13.0 0.8 3.2 7.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Zn_ribbon_SprT PF17283.2 gi|218884461|ref|YP_002428843.1| - 0.088 12.7 1.3 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain 7tm_6 PF02949.20 gi|218884462|ref|YP_002428844.1| - 3.1e-06 26.5 0.6 3.6e-06 26.3 0.6 1.1 1 0 0 1 1 1 1 7tm Odorant receptor DUF3270 PF11674.8 gi|218884462|ref|YP_002428844.1| - 0.036 14.2 0.7 0.24 11.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3270) MARVEL PF01284.23 gi|218884462|ref|YP_002428844.1| - 0.038 14.0 0.4 0.038 14.0 0.4 1.7 2 1 0 2 2 2 0 Membrane-associating domain DUF3087 PF11286.8 gi|218884462|ref|YP_002428844.1| - 0.05 13.1 2.2 2.1 7.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) MrpF_PhaF PF04066.13 gi|218884462|ref|YP_002428844.1| - 2.5 8.6 9.1 2.9 8.4 0.8 3.1 2 2 1 3 3 3 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) SecY PF00344.20 gi|218884463|ref|YP_002428845.1| - 2e-60 204.7 19.2 2.9e-60 204.1 19.2 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|218884463|ref|YP_002428845.1| - 8.7e-10 38.3 0.9 8.7e-10 38.3 0.9 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|218884464|ref|YP_002428846.1| - 4.3e-19 69.4 0.4 7.9e-19 68.6 0.4 1.4 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|218884464|ref|YP_002428846.1| - 0.0014 18.1 0.1 0.0027 17.2 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L30 PF00327.20 gi|218884465|ref|YP_002428847.1| - 5.5e-11 42.2 0.0 1e-10 41.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 gi|218884466|ref|YP_002428848.1| - 3.4e-24 84.6 3.1 2.1e-23 82.1 1.2 2.4 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|218884466|ref|YP_002428848.1| - 2e-23 81.6 0.3 4e-23 80.7 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|218884467|ref|YP_002428849.1| - 6.4e-30 104.3 2.5 3.4e-23 82.4 1.0 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|218884467|ref|YP_002428849.1| - 1.6e-06 28.4 0.1 6.6e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L18_c PF14204.6 gi|218884467|ref|YP_002428849.1| - 1.3e-05 26.0 0.0 2.3e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region MgsA_C PF12002.8 gi|218884467|ref|YP_002428849.1| - 0.073 13.0 0.2 7.3 6.5 0.0 2.2 1 1 1 2 2 2 0 MgsA AAA+ ATPase C terminal Ribosomal_L19e PF01280.20 gi|218884468|ref|YP_002428850.1| - 2.4e-52 176.8 7.1 2.7e-52 176.7 7.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF4019 PF13211.6 gi|218884468|ref|YP_002428850.1| - 0.043 14.2 0.1 0.077 13.4 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4019) Ribosomal_L32e PF01655.18 gi|218884469|ref|YP_002428851.1| - 6.5e-32 110.2 0.0 7.5e-32 110.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|218884470|ref|YP_002428852.1| - 2.2e-25 89.1 9.5 1.1e-16 61.3 1.4 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 gi|218884471|ref|YP_002428853.1| - 6.2e-25 87.6 0.0 8.6e-25 87.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|218884472|ref|YP_002428854.1| - 2.9e-12 46.1 1.6 3.4e-12 45.9 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|218884472|ref|YP_002428854.1| - 0.0095 15.8 2.2 0.014 15.3 2.2 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.7 gi|218884472|ref|YP_002428854.1| - 0.017 15.1 1.9 0.023 14.7 1.9 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|218884472|ref|YP_002428854.1| - 0.024 14.7 0.3 0.028 14.5 0.3 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-P11 PF03854.14 gi|218884472|ref|YP_002428854.1| - 0.05 13.3 0.2 0.069 12.8 0.2 1.2 1 0 0 1 1 1 0 P-11 zinc finger Prim_Zn_Ribbon PF08273.12 gi|218884472|ref|YP_002428854.1| - 0.11 12.8 3.4 0.76 10.1 0.3 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF1451 PF07295.11 gi|218884472|ref|YP_002428854.1| - 0.11 12.5 0.1 0.14 12.2 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-CCHC_2 PF13696.6 gi|218884472|ref|YP_002428854.1| - 0.62 10.0 4.8 2.4 8.1 0.3 2.2 2 0 0 2 2 2 0 Zinc knuckle Ribosomal_L5_C PF00673.21 gi|218884473|ref|YP_002428855.1| - 4.8e-22 77.9 0.0 1.2e-21 76.7 0.0 1.7 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|218884473|ref|YP_002428855.1| - 1.4e-19 70.1 0.2 3.7e-19 68.8 0.2 1.8 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|218884474|ref|YP_002428856.1| - 1.5e-23 82.5 0.2 2.5e-23 81.8 0.2 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|218884474|ref|YP_002428856.1| - 2e-15 56.6 1.9 3.2e-15 55.9 1.9 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|218884474|ref|YP_002428856.1| - 1.9e-11 43.5 0.3 5.9e-11 41.9 0.0 2.0 2 0 0 2 2 2 1 S4 domain 40S_S4_C PF16121.5 gi|218884474|ref|YP_002428856.1| - 0.0003 20.4 0.0 0.00053 19.6 0.0 1.4 1 0 0 1 1 1 1 40S ribosomal protein S4 C-terminus KOW PF00467.29 gi|218884474|ref|YP_002428856.1| - 0.018 15.0 1.4 0.037 14.0 1.4 1.6 1 0 0 1 1 1 0 KOW motif S4_2 PF13275.6 gi|218884474|ref|YP_002428856.1| - 0.03 14.1 0.4 0.085 12.7 0.1 1.9 2 0 0 2 2 2 0 S4 domain 3HCDH PF00725.22 gi|218884474|ref|YP_002428856.1| - 0.07 13.8 0.0 0.11 13.1 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Ribosomal_L26 PF16906.5 gi|218884475|ref|YP_002428857.1| - 2.8e-30 104.6 0.4 3.5e-30 104.3 0.4 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|218884475|ref|YP_002428857.1| - 3.4e-11 42.7 3.0 3.4e-11 42.7 3.0 1.6 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.19 gi|218884476|ref|YP_002428858.1| - 4.2e-37 126.9 0.0 5.3e-37 126.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|218884477|ref|YP_002428859.1| - 4.5e-27 93.9 3.0 5.7e-27 93.6 3.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|218884477|ref|YP_002428859.1| - 0.024 15.0 1.2 0.036 14.5 0.1 1.9 2 0 0 2 2 2 0 Ribosomal_S17 N-terminal zf-C3H1 PF10650.9 gi|218884477|ref|YP_002428859.1| - 0.084 12.6 0.9 0.16 11.7 0.9 1.4 1 0 0 1 1 1 0 Putative zinc-finger domain UPF0086 PF01868.16 gi|218884478|ref|YP_002428860.1| - 1e-19 70.2 0.0 1.2e-19 70.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|218884479|ref|YP_002428861.1| - 5.7e-20 71.0 6.1 7.3e-20 70.7 6.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.20 gi|218884480|ref|YP_002428862.1| - 3.5e-23 81.9 0.9 5.7e-23 81.2 0.9 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|218884480|ref|YP_002428862.1| - 2.5e-13 49.6 0.0 4.8e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|218884480|ref|YP_002428862.1| - 0.002 17.9 0.5 0.0072 16.1 0.2 2.1 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|218884480|ref|YP_002428862.1| - 0.0057 16.5 0.0 0.013 15.3 0.0 1.7 1 0 0 1 1 1 1 KH domain Ribosomal_L22 PF00237.19 gi|218884481|ref|YP_002428863.1| - 9.1e-30 103.0 0.2 1.1e-29 102.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|218884482|ref|YP_002428864.1| - 7.4e-35 118.7 0.3 9.7e-35 118.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 gi|218884482|ref|YP_002428864.1| - 0.0015 19.0 0.8 0.0027 18.2 0.8 1.3 1 0 0 1 1 1 1 bZIP Maf transcription factor DUF913 PF06025.12 gi|218884482|ref|YP_002428864.1| - 0.0062 15.6 0.0 0.0062 15.6 0.0 1.1 1 0 0 1 1 1 1 Domain of Unknown Function (DUF913) VWA_CoxE PF05762.14 gi|218884483|ref|YP_002428865.1| - 1.7e-10 40.7 0.1 2.9e-10 39.9 0.1 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|218884483|ref|YP_002428865.1| - 0.00049 20.7 0.0 0.0021 18.7 0.0 2.0 1 1 0 1 1 1 1 von Willebrand factor type A domain PALP PF00291.25 gi|218884483|ref|YP_002428865.1| - 0.023 14.1 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme LpxI_N PF17930.1 gi|218884483|ref|YP_002428865.1| - 0.043 13.7 0.1 15 5.5 0.0 2.6 2 0 0 2 2 2 0 LpxI N-terminal domain AAA_5 PF07728.14 gi|218884484|ref|YP_002428866.1| - 1.3e-15 57.6 0.0 2e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|218884484|ref|YP_002428866.1| - 0.00025 20.9 0.0 0.0037 17.1 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|218884484|ref|YP_002428866.1| - 0.007 16.8 0.1 0.036 14.5 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|218884484|ref|YP_002428866.1| - 0.011 15.5 0.0 4.6 6.9 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|218884484|ref|YP_002428866.1| - 0.024 14.4 0.0 0.19 11.4 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|218884484|ref|YP_002428866.1| - 0.073 13.4 0.0 1.2 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|218884484|ref|YP_002428866.1| - 0.081 12.4 0.0 0.37 10.3 0.0 2.0 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|218884484|ref|YP_002428866.1| - 0.16 12.5 0.0 0.31 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|218884484|ref|YP_002428866.1| - 0.17 11.3 0.0 4 6.8 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Ribosomal_L2_C PF03947.18 gi|218884485|ref|YP_002428867.1| - 2.1e-42 144.3 3.1 3.5e-42 143.6 3.1 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|218884485|ref|YP_002428867.1| - 3.5e-12 46.1 0.0 9.5e-12 44.7 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain ProQ_C PF17516.2 gi|218884485|ref|YP_002428867.1| - 0.045 13.2 1.1 24 4.4 0.0 3.3 2 1 1 3 3 3 0 ProQ C-terminal domain Ribosomal_L23 PF00276.20 gi|218884486|ref|YP_002428868.1| - 2.1e-20 72.8 2.1 1.6e-19 70.0 2.1 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 ASL_C PF08328.11 gi|218884486|ref|YP_002428868.1| - 0.045 13.9 0.1 0.05 13.7 0.1 1.1 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal FliJ PF02050.16 gi|218884486|ref|YP_002428868.1| - 0.16 12.2 0.0 0.2 11.9 0.0 1.0 1 0 0 1 1 1 0 Flagellar FliJ protein Ribosomal_L4 PF00573.22 gi|218884487|ref|YP_002428869.1| - 1.9e-36 125.6 0.0 2.3e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|218884488|ref|YP_002428870.1| - 1e-65 222.1 1.2 7.3e-45 153.5 0.0 2.9 2 1 0 2 2 2 2 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|218884489|ref|YP_002428871.1| - 2.1e-36 125.9 0.0 3.5e-35 121.9 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methyltransferase YpjP PF14005.6 gi|218884489|ref|YP_002428871.1| - 0.028 14.5 0.4 0.26 11.3 0.3 2.0 2 0 0 2 2 2 0 YpjP-like protein PAPS_reduct PF01507.19 gi|218884490|ref|YP_002428872.1| - 3e-43 147.9 0.0 5.6e-43 147.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|218884490|ref|YP_002428872.1| - 0.11 11.9 0.3 0.59 9.6 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|218884490|ref|YP_002428872.1| - 0.17 11.4 0.1 3 7.3 0.0 2.6 3 0 0 3 3 3 0 Diphthamide synthase DEAD PF00270.29 gi|218884491|ref|YP_002428873.1| - 2.1e-29 102.5 0.0 5.7e-27 94.6 0.0 2.6 3 0 0 3 3 3 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|218884491|ref|YP_002428873.1| - 1.7e-21 76.6 0.0 1.4e-19 70.5 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|218884491|ref|YP_002428873.1| - 1.1e-08 35.1 0.0 2.7e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated ResIII PF04851.15 gi|218884491|ref|YP_002428873.1| - 1.2e-05 25.4 0.0 2.9e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|218884491|ref|YP_002428873.1| - 0.00029 21.2 0.0 0.0015 18.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain UvrD-helicase PF00580.21 gi|218884491|ref|YP_002428873.1| - 0.071 12.6 0.0 0.3 10.5 0.0 1.9 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain HypA PF01155.19 gi|218884491|ref|YP_002428873.1| - 0.075 13.1 0.1 0.21 11.6 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Dppa2_A PF14049.6 gi|218884492|ref|YP_002428874.1| - 4 7.7 9.5 7.3 6.8 9.5 1.5 1 0 0 1 1 1 0 Dppa2/4 conserved region in higher vertebrates RRP14 PF15459.6 gi|218884492|ref|YP_002428874.1| - 5 7.8 10.8 1.1 9.9 7.3 1.8 2 0 0 2 2 2 0 60S ribosome biogenesis protein Rrp14 TPR_5 PF12688.7 gi|218884493|ref|YP_002428875.1| - 0.079 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Tetratrico peptide repeat TarH PF02203.15 gi|218884493|ref|YP_002428875.1| - 0.15 12.0 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Tar ligand binding domain homologue PCNA_N PF00705.18 gi|218884495|ref|YP_002428877.1| - 1.8e-10 40.6 0.0 4.5e-10 39.3 0.0 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|218884495|ref|YP_002428877.1| - 1.2e-09 38.4 0.2 8.2e-07 29.2 0.1 3.6 2 2 1 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.12 gi|218884495|ref|YP_002428877.1| - 0.00075 18.7 0.0 0.0014 17.8 0.0 1.5 2 1 0 2 2 2 1 Hus1-like protein Rad1 PF02144.16 gi|218884495|ref|YP_002428877.1| - 0.0097 15.0 0.1 0.37 9.8 0.0 2.0 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Pox_TAP PF03355.14 gi|218884495|ref|YP_002428877.1| - 0.078 12.5 0.1 3 7.4 0.0 2.1 2 0 0 2 2 2 0 Viral Trans-Activator Protein Rad9 PF04139.13 gi|218884495|ref|YP_002428877.1| - 0.11 11.9 0.0 0.5 9.8 0.0 1.9 2 0 0 2 2 2 0 Rad9 POR PF01558.18 gi|218884496|ref|YP_002428878.1| - 3.7e-39 134.6 0.5 4.4e-39 134.4 0.5 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|218884497|ref|YP_002428879.1| - 1.1e-17 63.0 16.3 7e-10 38.3 6.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|218884497|ref|YP_002428879.1| - 1.5e-11 44.3 11.2 1.8e-11 44.0 11.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218884497|ref|YP_002428879.1| - 3.5e-11 42.7 17.0 7.7e-06 25.8 5.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|218884497|ref|YP_002428879.1| - 6.8e-10 39.4 12.7 1.5e-09 38.3 12.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|218884497|ref|YP_002428879.1| - 1.5e-09 37.8 12.3 7.1e-05 22.8 2.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|218884497|ref|YP_002428879.1| - 2.3e-09 38.0 9.9 2.3e-05 25.2 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|218884497|ref|YP_002428879.1| - 1.2e-08 35.0 8.4 1.6e-08 34.5 8.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|218884497|ref|YP_002428879.1| - 4e-08 32.9 13.6 0.00011 22.1 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|218884497|ref|YP_002428879.1| - 5.4e-08 32.7 16.4 0.0007 19.9 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|218884497|ref|YP_002428879.1| - 1.9e-06 28.2 6.3 0.0076 16.7 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|218884497|ref|YP_002428879.1| - 3.4e-05 24.3 6.6 0.065 13.8 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|218884497|ref|YP_002428879.1| - 0.0023 18.7 19.3 0.11 13.5 7.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|218884497|ref|YP_002428879.1| - 0.0024 18.7 7.1 0.096 13.5 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|218884497|ref|YP_002428879.1| - 0.0065 17.0 11.8 0.45 11.1 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|218884497|ref|YP_002428879.1| - 0.0076 17.0 16.8 0.055 14.2 5.0 3.5 2 2 0 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|218884497|ref|YP_002428879.1| - 2.7 8.2 11.9 8.7 6.6 11.9 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|218884498|ref|YP_002428880.1| - 3.9e-67 226.4 0.5 5e-67 226.0 0.5 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|218884498|ref|YP_002428880.1| - 2.8e-23 82.1 0.0 8.3e-23 80.6 0.0 1.8 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|218884498|ref|YP_002428880.1| - 0.0076 16.1 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|218884498|ref|YP_002428880.1| - 0.034 13.8 0.1 0.056 13.1 0.1 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PCIF1_WW PF12237.8 gi|218884498|ref|YP_002428880.1| - 0.095 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphorylated CTD interacting factor 1 WW domain Type_ISP_C PF18135.1 gi|218884498|ref|YP_002428880.1| - 0.13 11.2 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Type ISP C-terminal specificity domain TPP_enzyme_C PF02775.21 gi|218884499|ref|YP_002428881.1| - 1.1e-23 83.8 0.2 1.5e-23 83.3 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|218884499|ref|YP_002428881.1| - 0.019 14.2 0.3 0.033 13.4 0.3 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Sec61_beta PF03911.16 gi|218884500|ref|YP_002428882.1| - 1.1e-13 51.0 0.6 1.5e-13 50.5 0.6 1.2 1 0 0 1 1 1 1 Sec61beta family MazG PF03819.17 gi|218884501|ref|YP_002428883.1| - 4.4e-12 46.0 0.6 6.2e-12 45.5 0.6 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|218884501|ref|YP_002428883.1| - 0.00058 20.1 0.1 0.00079 19.6 0.1 1.1 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|218884501|ref|YP_002428883.1| - 0.00059 20.2 0.3 0.00069 20.0 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase PcrB PF01884.17 gi|218884502|ref|YP_002428884.1| - 1.6e-50 171.7 0.0 2.1e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|218884502|ref|YP_002428884.1| - 2.1e-05 24.1 0.0 3.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|218884502|ref|YP_002428884.1| - 0.0042 16.4 0.1 0.006 15.8 0.1 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|218884502|ref|YP_002428884.1| - 0.036 13.1 0.1 0.077 12.0 0.0 1.5 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.19 gi|218884502|ref|YP_002428884.1| - 0.052 12.9 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Elf1 PF05129.13 gi|218884503|ref|YP_002428885.1| - 5.9e-20 71.1 0.3 7.5e-20 70.8 0.3 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.12 gi|218884503|ref|YP_002428885.1| - 6.1e-06 25.7 0.4 1.5e-05 24.4 0.4 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_L32p PF01783.23 gi|218884503|ref|YP_002428885.1| - 0.0043 17.3 1.3 0.037 14.3 0.2 2.1 2 0 0 2 2 2 1 Ribosomal L32p protein family zf-ribbon_3 PF13248.6 gi|218884503|ref|YP_002428885.1| - 0.0062 15.9 1.8 0.15 11.5 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|218884503|ref|YP_002428885.1| - 0.0071 16.7 0.1 0.011 16.1 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-Mss51 PF13824.6 gi|218884503|ref|YP_002428885.1| - 0.022 14.8 1.9 0.32 11.1 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ISL3 PF14690.6 gi|218884503|ref|YP_002428885.1| - 0.041 14.6 0.1 0.61 10.8 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_7 PF02591.15 gi|218884503|ref|YP_002428885.1| - 0.046 13.9 0.4 1 9.6 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain CxC7 PF18866.1 gi|218884503|ref|YP_002428885.1| - 0.05 13.8 1.7 7.3 6.8 0.1 2.3 1 1 1 2 2 2 0 CxC7 like cysteine cluster associated with KDZ transposases TFIIS_C PF01096.18 gi|218884503|ref|YP_002428885.1| - 0.051 13.4 0.6 0.079 12.8 0.6 1.3 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) Ogr_Delta PF04606.12 gi|218884503|ref|YP_002428885.1| - 0.089 12.8 2.0 0.16 12.0 2.0 1.4 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger GATA PF00320.27 gi|218884503|ref|YP_002428885.1| - 0.096 12.3 0.2 0.18 11.4 0.2 1.5 1 1 0 1 1 1 0 GATA zinc finger MvaI_BcnI PF15515.6 gi|218884503|ref|YP_002428885.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 MvaI/BcnI restriction endonuclease family DUF1610 PF07754.11 gi|218884503|ref|YP_002428885.1| - 0.13 12.3 1.3 0.13 12.3 1.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|218884503|ref|YP_002428885.1| - 0.15 11.8 2.9 1 9.1 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain FdhE PF04216.12 gi|218884503|ref|YP_002428885.1| - 0.18 11.6 0.3 0.23 11.3 0.3 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Zn_Tnp_IS1595 PF12760.7 gi|218884503|ref|YP_002428885.1| - 0.23 11.5 2.4 0.77 9.8 2.4 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin PF00301.20 gi|218884503|ref|YP_002428885.1| - 0.58 10.2 2.4 3.1 7.9 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.10 gi|218884503|ref|YP_002428885.1| - 1.7 8.9 4.2 3.5 7.8 0.3 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|218884503|ref|YP_002428885.1| - 2.4 7.9 7.2 1.3 8.7 0.4 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain SWIM PF04434.17 gi|218884504|ref|YP_002428886.1| - 0.0013 18.4 0.0 0.0024 17.5 0.0 1.4 1 0 0 1 1 1 1 SWIM zinc finger Kelch_2 PF07646.15 gi|218884505|ref|YP_002428887.1| - 3.3 7.8 4.7 17 5.5 0.2 3.5 4 0 0 4 4 4 0 Kelch motif Peptidase_C92 PF05708.12 gi|218884508|ref|YP_002428890.1| - 1.2e-14 54.8 0.0 1.6e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family NLPC_P60 PF00877.19 gi|218884508|ref|YP_002428890.1| - 6.2e-06 26.2 0.2 3.3e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 NlpC/P60 family LRAT PF04970.13 gi|218884508|ref|YP_002428890.1| - 0.00011 22.5 0.0 0.00016 21.9 0.0 1.2 1 0 0 1 1 1 1 Lecithin retinol acyltransferase ABC_tran PF00005.27 gi|218884509|ref|YP_002428891.1| - 6.7e-29 101.1 0.0 1.1e-28 100.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218884509|ref|YP_002428891.1| - 5.2e-09 36.3 1.0 0.0011 18.9 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|218884509|ref|YP_002428891.1| - 0.0002 21.8 0.0 0.00025 21.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|218884509|ref|YP_002428891.1| - 0.00065 19.6 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|218884509|ref|YP_002428891.1| - 0.002 18.6 0.0 0.0031 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|218884509|ref|YP_002428891.1| - 0.0025 18.1 0.1 0.014 15.7 0.2 2.6 2 1 1 3 3 3 1 AAA domain Rad17 PF03215.15 gi|218884509|ref|YP_002428891.1| - 0.0035 17.3 0.1 0.019 14.9 0.0 1.9 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|218884509|ref|YP_002428891.1| - 0.004 16.9 0.0 0.0072 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|218884509|ref|YP_002428891.1| - 0.0057 16.1 0.1 0.16 11.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_28 PF13521.6 gi|218884509|ref|YP_002428891.1| - 0.032 14.5 0.0 0.051 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|218884509|ref|YP_002428891.1| - 0.04 13.8 0.0 0.086 12.8 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|218884509|ref|YP_002428891.1| - 0.042 14.3 0.0 0.2 12.1 0.0 2.2 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|218884509|ref|YP_002428891.1| - 0.044 13.7 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_ATPase PF09818.9 gi|218884509|ref|YP_002428891.1| - 0.054 12.3 0.1 0.89 8.3 0.0 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 gi|218884509|ref|YP_002428891.1| - 0.058 12.6 0.0 0.097 11.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|218884509|ref|YP_002428891.1| - 0.093 13.3 0.1 0.23 12.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|218884509|ref|YP_002428891.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Cytidylate_kin PF02224.18 gi|218884509|ref|YP_002428891.1| - 0.12 12.1 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Cytidylate kinase SbcCD_C PF13558.6 gi|218884509|ref|YP_002428891.1| - 0.15 12.3 0.1 0.36 11.1 0.1 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|218884509|ref|YP_002428891.1| - 0.18 11.5 0.0 0.39 10.4 0.0 1.5 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_14 PF13173.6 gi|218884509|ref|YP_002428891.1| - 0.19 11.8 0.0 0.65 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|218884510|ref|YP_002428892.1| - 5.4e-16 58.9 48.3 1.1e-09 38.3 12.8 3.2 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component AAA_assoc_C PF09821.9 gi|218884511|ref|YP_002428893.1| - 1e-24 87.4 0.0 1.1e-24 87.2 0.0 1.0 1 0 0 1 1 1 1 C-terminal AAA-associated domain CARD PF00619.21 gi|218884511|ref|YP_002428893.1| - 0.01 15.8 0.3 0.015 15.3 0.3 1.3 1 0 0 1 1 1 0 Caspase recruitment domain DUF505 PF04458.12 gi|218884511|ref|YP_002428893.1| - 0.012 14.1 0.1 0.013 13.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) E1-E2_ATPase PF00122.20 gi|218884512|ref|YP_002428894.1| - 5.6e-46 156.3 1.9 5.6e-46 156.3 1.9 2.7 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|218884512|ref|YP_002428894.1| - 4.9e-25 89.0 0.4 8.3e-25 88.3 0.4 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|218884512|ref|YP_002428894.1| - 4e-13 48.8 0.4 1.2e-12 47.3 0.0 2.1 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|218884512|ref|YP_002428894.1| - 4.8e-06 26.5 0.4 5.7e-05 23.0 0.2 2.3 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.21 gi|218884512|ref|YP_002428894.1| - 0.0025 17.5 8.7 0.0025 17.5 8.7 2.2 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus PASTA PF03793.19 gi|218884512|ref|YP_002428894.1| - 0.11 12.4 0.3 1 9.3 0.0 2.6 2 0 0 2 2 2 0 PASTA domain Lon_2 PF13337.6 gi|218884513|ref|YP_002428895.1| - 7e-149 496.2 0.0 7.9e-149 496.1 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease N6_Mtase PF02384.16 gi|218884514|ref|YP_002428896.1| - 1.4e-07 31.1 0.0 0.00022 20.6 0.0 2.4 2 0 0 2 2 2 2 N-6 DNA Methylase TaqI_C PF12950.7 gi|218884514|ref|YP_002428896.1| - 0.00099 19.2 0.0 0.0085 16.2 0.0 2.5 1 1 0 1 1 1 1 TaqI-like C-terminal specificity domain UPF0020 PF01170.18 gi|218884514|ref|YP_002428896.1| - 0.028 14.1 0.0 0.64 9.7 0.0 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Eco57I PF07669.11 gi|218884514|ref|YP_002428896.1| - 0.053 14.0 0.0 0.19 12.3 0.0 1.9 1 0 0 1 1 1 0 Eco57I restriction-modification methylase zf-TFIIB PF13453.6 gi|218884515|ref|YP_002428897.1| - 0.00013 21.2 0.8 0.031 13.6 0.0 2.2 2 0 0 2 2 2 2 Transcription factor zinc-finger UPF0547 PF10571.9 gi|218884515|ref|YP_002428897.1| - 0.0012 18.9 3.5 0.018 15.1 0.3 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|218884515|ref|YP_002428897.1| - 0.0014 18.5 1.0 1.1 9.3 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Mu-like_Com PF10122.9 gi|218884515|ref|YP_002428897.1| - 0.0018 17.7 0.1 0.24 10.9 0.0 2.2 2 0 0 2 2 2 1 Mu-like prophage protein Com CpXC PF14353.6 gi|218884515|ref|YP_002428897.1| - 0.0023 18.0 0.0 1.3 9.1 0.0 2.0 2 0 0 2 2 2 2 CpXC protein zf-Sec23_Sec24 PF04810.15 gi|218884515|ref|YP_002428897.1| - 0.0024 17.9 0.4 0.047 13.7 0.1 2.1 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger Zn-ribbon_8 PF09723.10 gi|218884515|ref|YP_002428897.1| - 0.029 14.5 0.2 2.9 8.1 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain TRAF6_Z2 PF18048.1 gi|218884515|ref|YP_002428897.1| - 0.031 14.4 0.7 3 8.0 0.0 2.2 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 zinc_ribbon_5 PF13719.6 gi|218884515|ref|YP_002428897.1| - 0.056 13.2 0.8 9.6 6.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|218884515|ref|YP_002428897.1| - 0.074 13.9 1.9 7.5 7.7 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2225 PF09986.9 gi|218884515|ref|YP_002428897.1| - 0.08 12.7 0.0 0.59 9.8 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-ribbon_3 PF13248.6 gi|218884515|ref|YP_002428897.1| - 0.088 12.3 3.8 0.61 9.6 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|218884515|ref|YP_002428897.1| - 0.1 12.5 0.3 1.8 8.5 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-RING_7 PF02591.15 gi|218884515|ref|YP_002428897.1| - 0.15 12.3 2.8 0.18 12.0 0.2 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|218884515|ref|YP_002428897.1| - 0.23 11.4 3.0 1.6 8.7 3.0 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|218884515|ref|YP_002428897.1| - 0.24 11.1 0.2 0.24 11.1 0.2 2.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|218884515|ref|YP_002428897.1| - 0.3 10.9 3.5 0.76 9.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|218884515|ref|YP_002428897.1| - 0.85 9.6 7.2 30 4.7 7.7 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain P5CR_dimer PF14748.6 gi|218884517|ref|YP_002428899.1| - 1.4e-16 60.6 0.0 2.1e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation DUF973 PF06157.11 gi|218884518|ref|YP_002428900.1| - 2.4e-10 40.0 22.3 3.1e-10 39.6 22.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF973) Pho86 PF11124.8 gi|218884518|ref|YP_002428900.1| - 0.17 11.3 1.4 0.25 10.8 1.4 1.2 1 0 0 1 1 1 0 Inorganic phosphate transporter Pho86 UPF0239 PF06783.11 gi|218884518|ref|YP_002428900.1| - 0.49 10.6 2.4 0.67 10.2 0.7 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0239) Claudin_2 PF13903.6 gi|218884518|ref|YP_002428900.1| - 3.1 7.5 18.9 0.47 10.2 8.5 2.2 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction UPF0051 PF01458.17 gi|218884519|ref|YP_002428901.1| - 1.7e-29 103.1 0.0 2.4e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) N6_N4_Mtase PF01555.18 gi|218884519|ref|YP_002428901.1| - 1.9e-10 40.9 0.0 2.4e-09 37.3 0.0 2.1 2 0 0 2 2 2 1 DNA methylase UPF0020 PF01170.18 gi|218884519|ref|YP_002428901.1| - 2.3e-09 37.2 0.0 8.6e-06 25.6 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Pam16 PF03656.13 gi|218884519|ref|YP_002428901.1| - 0.12 12.4 0.1 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 Pam16 Ribosomal_S25 PF03297.15 gi|218884520|ref|YP_002428902.1| - 2.2e-09 37.4 0.9 2.9e-09 37.0 0.9 1.3 1 1 0 1 1 1 1 S25 ribosomal protein HTH_36 PF13730.6 gi|218884520|ref|YP_002428902.1| - 0.00011 22.0 0.0 0.00019 21.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|218884520|ref|YP_002428902.1| - 0.0003 20.6 0.1 0.00044 20.1 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|218884520|ref|YP_002428902.1| - 0.00051 19.9 0.6 0.005 16.8 0.2 2.0 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|218884520|ref|YP_002428902.1| - 0.00078 19.7 0.1 0.001 19.4 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 gi|218884520|ref|YP_002428902.1| - 0.00082 18.9 0.0 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|218884520|ref|YP_002428902.1| - 0.00092 19.2 0.0 0.0012 18.9 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|218884520|ref|YP_002428902.1| - 0.0013 18.6 0.2 0.0018 18.1 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|218884520|ref|YP_002428902.1| - 0.0025 17.8 0.0 0.0034 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|218884520|ref|YP_002428902.1| - 0.0043 17.2 0.2 0.0059 16.8 0.2 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|218884520|ref|YP_002428902.1| - 0.0047 16.7 0.0 0.0089 15.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain EAP30 PF04157.16 gi|218884520|ref|YP_002428902.1| - 0.0051 16.1 0.0 0.0061 15.9 0.0 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family GntR PF00392.21 gi|218884520|ref|YP_002428902.1| - 0.026 14.2 0.8 0.057 13.1 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.16 gi|218884520|ref|YP_002428902.1| - 0.035 13.9 0.5 0.076 12.8 0.3 1.7 1 1 1 2 2 2 0 LexA DNA binding domain DUF4423 PF14394.6 gi|218884520|ref|YP_002428902.1| - 0.057 13.1 0.0 0.064 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) MarR PF01047.22 gi|218884520|ref|YP_002428902.1| - 0.062 13.2 0.0 0.093 12.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|218884520|ref|YP_002428902.1| - 0.085 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|218884520|ref|YP_002428902.1| - 0.13 12.4 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|218884520|ref|YP_002428902.1| - 0.13 12.0 0.2 0.76 9.6 0.3 2.1 1 1 0 1 1 1 0 MerR family regulatory protein RtcB PF01139.17 gi|218884521|ref|YP_002428903.1| - 1.2e-164 548.4 0.0 1.4e-164 548.2 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB tRNA-synt_His PF13393.6 gi|218884522|ref|YP_002428904.1| - 6e-50 170.3 0.1 7.4e-50 170.0 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|218884522|ref|YP_002428904.1| - 9.6e-13 48.5 0.0 1.3e-12 48.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|218884522|ref|YP_002428904.1| - 2.7e-06 27.4 0.0 6.7e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.20 gi|218884522|ref|YP_002428904.1| - 0.00099 18.7 0.0 0.0026 17.3 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|218884522|ref|YP_002428904.1| - 0.41 9.7 2.8 1.1 8.3 1.0 2.3 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) tRNA_int_endo PF01974.17 gi|218884523|ref|YP_002428905.1| - 1.8e-09 37.5 0.1 3.7e-09 36.5 0.1 1.5 1 1 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|218884523|ref|YP_002428905.1| - 4.2e-05 23.1 0.0 8.9e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|218884523|ref|YP_002428905.1| - 0.054 13.8 0.0 0.13 12.6 0.0 1.6 2 0 0 2 2 2 0 Sen15 protein Cytochrome-c551 PF10643.9 gi|218884523|ref|YP_002428905.1| - 0.093 12.3 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 IF-2B PF01008.17 gi|218884524|ref|YP_002428906.1| - 1.5e-81 273.7 0.1 1.8e-81 273.4 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Hydrolase PF00702.26 gi|218884524|ref|YP_002428906.1| - 0.029 14.6 0.1 0.07 13.4 0.1 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase ProRS-C_2 PF09181.10 gi|218884524|ref|YP_002428906.1| - 0.073 13.2 0.7 21 5.3 0.1 3.1 3 0 0 3 3 3 0 Prolyl-tRNA synthetase, C-terminal Arc_PepC_II PF06847.11 gi|218884525|ref|YP_002428907.1| - 6.5e-23 81.1 0.3 1.6e-22 79.8 0.3 1.7 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|218884525|ref|YP_002428907.1| - 1e-08 35.5 3.5 1e-08 35.5 3.5 1.7 2 0 0 2 2 2 1 Type IV leader peptidase family Rad51 PF08423.11 gi|218884526|ref|YP_002428908.1| - 8.7e-95 316.8 0.0 1.1e-94 316.5 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|218884526|ref|YP_002428908.1| - 5e-18 65.5 0.0 6.8e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|218884526|ref|YP_002428908.1| - 1.8e-10 40.6 0.0 3.4e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|218884526|ref|YP_002428908.1| - 2.6e-10 40.2 0.1 7.3e-09 35.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain HHH_5 PF14520.6 gi|218884526|ref|YP_002428908.1| - 0.00024 21.6 0.4 0.00067 20.2 0.1 2.0 2 0 0 2 2 1 1 Helix-hairpin-helix domain HTH_31 PF13560.6 gi|218884526|ref|YP_002428908.1| - 0.0011 19.3 0.1 0.25 11.7 0.0 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain IMS_HHH PF11798.8 gi|218884526|ref|YP_002428908.1| - 0.0015 18.7 0.0 0.0045 17.2 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif Sigma70_r3 PF04539.16 gi|218884526|ref|YP_002428908.1| - 0.0094 16.0 0.4 0.44 10.7 0.1 2.7 3 0 0 3 3 3 1 Sigma-70 region 3 PAXNEB PF05625.11 gi|218884526|ref|YP_002428908.1| - 0.024 13.8 0.3 3.1 6.9 0.2 2.2 2 0 0 2 2 2 0 PAXNEB protein HTH_3 PF01381.22 gi|218884526|ref|YP_002428908.1| - 0.03 14.4 0.1 6.1 7.0 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix LPD22 PF18834.1 gi|218884526|ref|YP_002428908.1| - 0.032 14.5 0.1 3.3 8.0 0.0 2.4 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 ABC_tran PF00005.27 gi|218884526|ref|YP_002428908.1| - 0.049 14.1 0.0 0.13 12.8 0.0 1.7 2 0 0 2 2 2 0 ABC transporter AAA_22 PF13401.6 gi|218884526|ref|YP_002428908.1| - 0.07 13.4 0.0 0.13 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|218884526|ref|YP_002428908.1| - 0.095 13.2 0.0 0.35 11.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain Cdd1 PF11731.8 gi|218884526|ref|YP_002428908.1| - 0.13 12.5 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus tRNA-Thr_ED PF08915.11 gi|218884527|ref|YP_002428909.1| - 1.1e-46 158.3 0.0 2e-46 157.5 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|218884527|ref|YP_002428909.1| - 1.2e-25 89.4 0.6 2.6e-25 88.4 0.6 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|218884527|ref|YP_002428909.1| - 1.1e-15 58.1 0.1 3e-15 56.7 0.1 1.7 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) NOB1_Zn_bind PF08772.11 gi|218884528|ref|YP_002428910.1| - 0.00019 21.6 0.9 0.00033 20.8 0.9 1.5 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|218884528|ref|YP_002428910.1| - 0.0034 17.4 0.1 0.004 17.2 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-LITAF-like PF10601.9 gi|218884528|ref|YP_002428910.1| - 0.0036 17.5 3.2 0.014 15.6 3.2 1.8 1 1 0 1 1 1 1 LITAF-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|218884528|ref|YP_002428910.1| - 0.0071 16.4 0.8 0.011 15.9 0.8 1.4 1 1 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|218884528|ref|YP_002428910.1| - 0.0099 15.4 0.5 0.33 10.5 0.0 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zf-RING_7 PF02591.15 gi|218884528|ref|YP_002428910.1| - 0.012 15.8 1.0 0.12 12.6 0.1 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF3797 PF12677.7 gi|218884528|ref|YP_002428910.1| - 0.017 15.0 0.7 0.017 15.0 0.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Ogr_Delta PF04606.12 gi|218884528|ref|YP_002428910.1| - 0.018 15.0 0.3 0.023 14.7 0.3 1.2 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.6 gi|218884528|ref|YP_002428910.1| - 0.019 14.4 2.2 0.43 10.1 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|218884528|ref|YP_002428910.1| - 0.035 14.5 1.5 0.048 14.0 1.5 1.3 1 0 0 1 1 1 0 Probable Zinc-ribbon domain Sgf11 PF08209.11 gi|218884528|ref|YP_002428910.1| - 0.035 13.7 2.7 0.067 12.8 0.4 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) UPF0547 PF10571.9 gi|218884528|ref|YP_002428910.1| - 0.037 14.1 1.4 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.11 gi|218884528|ref|YP_002428910.1| - 0.044 13.8 0.9 0.044 13.8 0.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF35_N PF12172.8 gi|218884528|ref|YP_002428910.1| - 0.097 12.6 2.1 1.2 9.1 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L33 PF00471.20 gi|218884528|ref|YP_002428910.1| - 0.27 11.7 4.7 2.3 8.8 4.7 2.0 1 1 0 1 1 1 0 Ribosomal protein L33 Terminase_GpA PF05876.12 gi|218884528|ref|YP_002428910.1| - 0.3 9.6 1.7 0.33 9.4 1.7 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zinc_ribbon_2 PF13240.6 gi|218884528|ref|YP_002428910.1| - 0.32 10.8 7.6 0.49 10.2 1.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|218884528|ref|YP_002428910.1| - 0.38 10.6 4.4 7.5 6.5 1.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L37e PF01907.19 gi|218884528|ref|YP_002428910.1| - 2.4 8.4 6.9 0.54 10.4 0.9 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e TP6A_N PF04406.14 gi|218884529|ref|YP_002428911.1| - 1.5e-21 76.1 0.1 2.7e-21 75.3 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|218884529|ref|YP_002428911.1| - 0.009 15.9 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.11 gi|218884530|ref|YP_002428912.1| - 2e-61 206.5 0.0 3.5e-61 205.7 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|218884530|ref|YP_002428912.1| - 3.6e-13 50.0 0.0 4.9e-12 46.3 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|218884530|ref|YP_002428912.1| - 3.2e-11 43.2 0.0 5.9e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|218884530|ref|YP_002428912.1| - 1.2e-07 30.9 0.1 1.4e-05 24.1 0.0 2.2 2 0 0 2 2 2 2 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.22 gi|218884530|ref|YP_002428912.1| - 0.0014 19.1 0.0 0.0038 17.6 0.0 1.7 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HIT PF01230.23 gi|218884531|ref|YP_002428913.1| - 3.9e-13 50.0 0.0 5.3e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|218884531|ref|YP_002428913.1| - 1.3e-07 32.0 0.0 2e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|218884531|ref|YP_002428913.1| - 4.4e-07 29.8 0.1 6.3e-07 29.3 0.1 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Myosin_head PF00063.21 gi|218884532|ref|YP_002428914.1| - 0.018 13.3 0.0 0.019 13.2 0.0 1.0 1 0 0 1 1 1 0 Myosin head (motor domain) DUF1864 PF08933.11 gi|218884532|ref|YP_002428914.1| - 0.05 12.3 0.0 0.051 12.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1864) DpnD-PcfM PF14207.6 gi|218884532|ref|YP_002428914.1| - 0.2 11.6 1.5 0.3 11.0 0.2 1.9 2 0 0 2 2 2 0 DpnD/PcfM-like protein Ribosomal_L24e PF01246.20 gi|218884533|ref|YP_002428915.1| - 0.0023 18.1 0.3 0.0045 17.2 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L24e FYVE PF01363.21 gi|218884533|ref|YP_002428915.1| - 0.0075 16.4 0.1 0.0083 16.2 0.1 1.2 1 0 0 1 1 1 1 FYVE zinc finger zf-FCS PF06467.14 gi|218884533|ref|YP_002428915.1| - 0.041 13.8 0.1 0.053 13.5 0.1 1.2 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Ribosomal_S14 PF00253.21 gi|218884533|ref|YP_002428915.1| - 0.084 12.6 0.5 0.17 11.7 0.5 1.5 1 0 0 1 1 1 0 Ribosomal protein S14p/S29e Vps39_2 PF10367.9 gi|218884533|ref|YP_002428915.1| - 0.14 12.6 1.2 2.7 8.5 0.1 2.0 1 1 1 2 2 2 0 Vacuolar sorting protein 39 domain 2 DUF2208 PF09973.9 gi|218884534|ref|YP_002428916.1| - 2.4e-66 223.7 9.7 2.7e-66 223.5 9.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Phage_holin_3_6 PF07332.11 gi|218884534|ref|YP_002428916.1| - 0.13 12.4 7.2 2.5 8.2 1.8 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3488 PF11992.8 gi|218884534|ref|YP_002428916.1| - 0.61 9.0 9.1 0.59 9.0 7.6 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3488) DUF3784 PF12650.7 gi|218884534|ref|YP_002428916.1| - 0.93 9.7 16.9 4.7 7.5 4.9 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF3784) DUF72 PF01904.18 gi|218884536|ref|YP_002428918.1| - 1.3e-30 107.2 0.0 1.7e-30 106.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|218884536|ref|YP_002428918.1| - 0.0038 16.7 0.0 0.0089 15.5 0.0 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel ComA PF02679.15 gi|218884536|ref|YP_002428918.1| - 0.097 12.1 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) ACT_4 PF13291.6 gi|218884537|ref|YP_002428919.1| - 5.3e-07 30.1 0.1 1.1e-06 29.2 0.1 1.5 1 0 0 1 1 1 1 ACT domain MazE_antitoxin PF04014.18 gi|218884537|ref|YP_002428919.1| - 9.6e-06 25.4 0.1 2.1e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin ACT PF01842.25 gi|218884537|ref|YP_002428919.1| - 2.7e-05 23.9 0.1 7.1e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|218884537|ref|YP_002428919.1| - 0.00062 19.7 0.0 0.00095 19.1 0.0 1.4 1 0 0 1 1 1 1 ACT domain MraZ PF02381.18 gi|218884537|ref|YP_002428919.1| - 0.016 15.2 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like Pribosyltran PF00156.27 gi|218884538|ref|YP_002428920.1| - 4.9e-08 32.6 0.1 1e-07 31.6 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|218884538|ref|YP_002428920.1| - 0.02 15.0 0.0 0.051 13.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix ERCC3_RAD25_C PF16203.5 gi|218884540|ref|YP_002428922.1| - 3.7e-25 88.6 0.0 8e-25 87.5 0.0 1.5 1 1 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|218884540|ref|YP_002428922.1| - 5.9e-22 78.5 0.2 2e-21 76.8 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|218884540|ref|YP_002428922.1| - 1.3e-19 70.5 0.0 4.7e-19 68.8 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|218884540|ref|YP_002428922.1| - 6.1e-06 26.1 0.2 2.1e-05 24.4 0.0 2.0 2 1 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|218884540|ref|YP_002428922.1| - 0.00019 20.3 0.3 0.098 11.4 0.0 2.4 1 1 1 2 2 2 2 SNF2 family N-terminal domain AAA_12 PF13087.6 gi|218884540|ref|YP_002428922.1| - 0.003 17.2 0.2 0.0064 16.1 0.2 1.5 1 0 0 1 1 1 1 AAA domain PriCT_1 PF08708.11 gi|218884540|ref|YP_002428922.1| - 0.043 13.6 0.0 7.1 6.5 0.1 2.8 2 0 0 2 2 2 0 Primase C terminal 1 (PriCT-1) AAA_22 PF13401.6 gi|218884540|ref|YP_002428922.1| - 0.32 11.3 3.1 6.8 7.0 0.5 3.5 3 1 0 3 3 3 0 AAA domain Alba PF01918.21 gi|218884542|ref|YP_002428924.1| - 7.4e-21 73.7 0.7 1e-20 73.3 0.7 1.2 1 0 0 1 1 1 1 Alba Topoisom_bac PF01131.20 gi|218884544|ref|YP_002428926.1| - 4.1e-64 217.1 0.0 9.5e-64 215.9 0.0 1.6 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|218884544|ref|YP_002428926.1| - 3.2e-21 75.5 0.0 9.9e-21 73.9 0.0 1.9 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|218884544|ref|YP_002428926.1| - 2.3e-14 53.5 0.1 5.6e-14 52.3 0.1 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|218884544|ref|YP_002428926.1| - 4.7e-08 33.4 0.6 5.9e-06 26.6 0.0 3.1 3 0 0 3 3 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|218884544|ref|YP_002428926.1| - 2.4e-06 27.6 0.0 7.5e-06 26.0 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|218884544|ref|YP_002428926.1| - 0.00032 20.5 0.1 0.0012 18.6 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|218884544|ref|YP_002428926.1| - 0.00061 20.1 0.2 0.0027 18.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain Toprim_4 PF13662.6 gi|218884544|ref|YP_002428926.1| - 0.00083 19.8 0.0 0.0026 18.2 0.0 1.9 1 0 0 1 1 1 1 Toprim domain AAA_30 PF13604.6 gi|218884544|ref|YP_002428926.1| - 0.0029 17.3 0.1 0.009 15.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|218884544|ref|YP_002428926.1| - 0.007 16.7 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|218884544|ref|YP_002428926.1| - 0.013 15.9 0.0 0.032 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Zn-ribbon_8 PF09723.10 gi|218884544|ref|YP_002428926.1| - 0.019 15.0 5.3 0.043 13.9 2.4 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Bac_DnaA PF00308.18 gi|218884544|ref|YP_002428926.1| - 0.021 14.6 0.0 0.062 13.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_25 PF13481.6 gi|218884544|ref|YP_002428926.1| - 0.024 14.2 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|218884544|ref|YP_002428926.1| - 0.026 14.6 4.0 1.1 9.4 0.7 2.3 2 0 0 2 2 2 0 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|218884544|ref|YP_002428926.1| - 0.042 13.9 3.2 3.9 7.6 0.0 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain AAA_10 PF12846.7 gi|218884544|ref|YP_002428926.1| - 0.056 12.4 0.0 0.089 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain zinc-ribbons_6 PF07191.12 gi|218884544|ref|YP_002428926.1| - 0.099 12.6 1.7 0.64 10.0 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbons DUF5608 PF18356.1 gi|218884544|ref|YP_002428926.1| - 0.12 12.3 1.9 0.35 10.9 0.1 2.7 2 0 0 2 2 1 0 Domain of unknown function (DUF5608) NOB1_Zn_bind PF08772.11 gi|218884544|ref|YP_002428926.1| - 0.16 12.2 6.4 7.8 6.7 0.4 3.5 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|218884544|ref|YP_002428926.1| - 0.37 10.8 3.3 0.87 9.6 0.1 2.7 3 0 0 3 3 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_Rg PF17915.1 gi|218884544|ref|YP_002428926.1| - 0.71 9.3 4.6 0.28 10.6 1.3 2.0 2 0 0 2 2 2 0 Reverse gyrase zinc finger Auto_anti-p27 PF06677.12 gi|218884544|ref|YP_002428926.1| - 1 9.6 2.8 1.9 8.7 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Alba PF01918.21 gi|218884545|ref|YP_002428927.1| - 2.5e-08 33.6 0.0 3.6e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Alba Ribo_biogen_C PF04034.13 gi|218884546|ref|YP_002428928.1| - 2.3e-37 127.5 0.0 3e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|218884546|ref|YP_002428928.1| - 0.11 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Possible Fer4-like domain in RNase L inhibitor, RLI AsnC_trans_reg PF01037.21 gi|218884547|ref|YP_002428929.1| - 5.7e-15 55.0 0.8 6.3e-15 54.9 0.8 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain SnoaL PF07366.12 gi|218884547|ref|YP_002428929.1| - 0.027 14.3 0.0 0.033 14.0 0.0 1.1 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase tRNA-synt_1b PF00579.25 gi|218884548|ref|YP_002428930.1| - 1.1e-48 166.1 0.0 1.4e-47 162.5 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF2309 PF10070.9 gi|218884548|ref|YP_002428930.1| - 0.058 11.7 0.0 0.083 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2309) Lactamase_B_2 PF12706.7 gi|218884549|ref|YP_002428931.1| - 1.1e-22 80.6 0.1 1.9e-22 79.8 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|218884549|ref|YP_002428931.1| - 4.4e-22 78.7 0.0 5.7e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|218884549|ref|YP_002428931.1| - 1e-10 41.9 1.1 1.9e-10 41.1 1.1 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.24 gi|218884550|ref|YP_002428932.1| - 5.7e-39 134.0 0.0 6.6e-39 133.8 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF1512 PF07431.12 gi|218884551|ref|YP_002428933.1| - 4.3e-149 496.3 6.9 4.9e-149 496.2 6.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) KH_2 PF07650.17 gi|218884551|ref|YP_002428933.1| - 0.12 12.3 0.9 0.35 10.7 0.0 2.3 3 0 0 3 3 3 0 KH domain HTH_psq PF05225.16 gi|218884551|ref|YP_002428933.1| - 0.16 11.7 0.0 0.33 10.7 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Nudix_N_2 PF14803.6 gi|218884552|ref|YP_002428934.1| - 0.0045 16.9 0.4 1.2 9.1 0.0 2.2 2 0 0 2 2 2 1 Nudix N-terminal DZR PF12773.7 gi|218884552|ref|YP_002428934.1| - 0.0092 16.0 0.1 0.013 15.5 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon Ost4 PF10215.9 gi|218884552|ref|YP_002428934.1| - 0.01 15.7 0.1 0.014 15.2 0.1 1.2 1 0 0 1 1 1 0 Oligosaccaryltransferase Zn-ribbon_8 PF09723.10 gi|218884552|ref|YP_002428934.1| - 0.011 15.9 1.1 0.022 14.8 1.1 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|218884552|ref|YP_002428934.1| - 0.012 15.0 2.3 1.6 8.3 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|218884552|ref|YP_002428934.1| - 0.012 15.6 0.1 0.017 15.2 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|218884552|ref|YP_002428934.1| - 0.031 14.2 0.4 4.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|218884552|ref|YP_002428934.1| - 0.052 13.1 3.9 0.65 9.6 3.9 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|218884552|ref|YP_002428934.1| - 0.064 13.2 1.1 0.22 11.5 1.1 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF4044 PF13253.6 gi|218884552|ref|YP_002428934.1| - 0.068 12.7 4.1 0.19 11.3 4.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4044) Lar_restr_allev PF14354.6 gi|218884552|ref|YP_002428934.1| - 0.074 13.4 0.1 12 6.4 0.1 2.1 2 0 0 2 2 2 0 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.16 gi|218884552|ref|YP_002428934.1| - 0.087 12.7 3.1 0.38 10.7 0.2 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF4519 PF15012.6 gi|218884552|ref|YP_002428934.1| - 0.087 13.0 1.3 0.14 12.4 1.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) zf-tcix PF14952.6 gi|218884552|ref|YP_002428934.1| - 0.13 11.9 2.5 2.7 7.7 0.7 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Mu-like_Com PF10122.9 gi|218884552|ref|YP_002428934.1| - 0.22 11.0 2.1 0.58 9.7 2.1 1.7 1 1 0 1 1 1 0 Mu-like prophage protein Com DNA_RNApol_7kD PF03604.13 gi|218884552|ref|YP_002428934.1| - 0.23 11.2 3.1 1 9.1 0.2 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-TFIIB PF13453.6 gi|218884552|ref|YP_002428934.1| - 0.47 9.8 3.2 1.2 8.6 3.2 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-NADH-PPase PF09297.11 gi|218884552|ref|YP_002428934.1| - 0.53 10.0 2.8 17 5.2 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|218884552|ref|YP_002428934.1| - 0.56 10.2 4.9 6.5 6.8 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|218884552|ref|YP_002428934.1| - 0.64 9.8 6.8 5.4 6.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|218884552|ref|YP_002428934.1| - 3.9 7.6 8.3 2.1 8.5 0.8 2.5 3 0 0 3 3 2 0 Acetyl-coA carboxylase zinc finger domain Rubredoxin_2 PF18073.1 gi|218884552|ref|YP_002428934.1| - 4.8 7.0 8.9 6.1 6.7 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF1805 PF08827.11 gi|218884553|ref|YP_002428935.1| - 2.5e-19 69.4 0.6 3.6e-19 68.9 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) PK PF00224.21 gi|218884554|ref|YP_002428936.1| - 2.4e-81 273.4 0.1 3.2e-81 272.9 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|218884554|ref|YP_002428936.1| - 1.6e-07 31.6 0.0 1.6e-07 31.6 0.0 2.8 4 0 0 4 4 4 1 Pyruvate kinase, alpha/beta domain Resolvase PF00239.21 gi|218884556|ref|YP_002428938.1| - 9.2e-25 87.5 0.5 1.3e-24 86.9 0.5 1.3 1 1 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|218884556|ref|YP_002428938.1| - 8.6e-09 35.5 0.0 1.8e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|218884556|ref|YP_002428938.1| - 0.00079 19.1 0.8 0.0033 17.1 0.1 2.4 3 0 0 3 3 3 1 MerR family regulatory protein HTH_23 PF13384.6 gi|218884556|ref|YP_002428938.1| - 0.011 15.5 0.0 0.026 14.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|218884556|ref|YP_002428938.1| - 0.029 14.5 0.0 0.07 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|218884556|ref|YP_002428938.1| - 0.099 12.7 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix MerR_1 PF13411.6 gi|218884556|ref|YP_002428938.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein TIM PF00121.18 gi|218884557|ref|YP_002428939.1| - 7.8e-15 54.9 0.0 5.4e-14 52.2 0.0 1.9 1 1 0 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|218884557|ref|YP_002428939.1| - 5.5e-07 29.1 1.5 9.5e-07 28.4 1.5 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|218884557|ref|YP_002428939.1| - 0.00065 19.0 0.0 0.00094 18.4 0.0 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DHO_dh PF01180.21 gi|218884557|ref|YP_002428939.1| - 0.0016 17.7 0.4 0.0021 17.4 0.4 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase B12-binding PF02310.19 gi|218884557|ref|YP_002428939.1| - 0.022 14.8 0.4 0.56 10.3 0.1 2.3 2 0 0 2 2 2 0 B12 binding domain FMN_dh PF01070.18 gi|218884557|ref|YP_002428939.1| - 0.082 11.9 0.8 0.15 11.0 0.4 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase FBPase_3 PF01950.16 gi|218884558|ref|YP_002428940.1| - 4.1e-185 615.1 0.0 4.7e-185 614.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase ABC_tran PF00005.27 gi|218884559|ref|YP_002428941.1| - 1.9e-38 132.1 0.0 1.1e-19 71.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|218884559|ref|YP_002428941.1| - 8.6e-14 52.0 9.0 0.0074 16.1 0.6 4.2 2 2 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|218884559|ref|YP_002428941.1| - 6.6e-12 45.3 2.5 0.00026 20.5 0.2 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|218884559|ref|YP_002428941.1| - 2.2e-10 40.2 4.2 5.3e-10 39.0 4.2 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|218884559|ref|YP_002428941.1| - 2.5e-08 33.4 10.3 3.4e-08 33.0 5.2 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_22 PF13401.6 gi|218884559|ref|YP_002428941.1| - 1e-06 29.1 0.0 0.026 14.8 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|218884559|ref|YP_002428941.1| - 6.8e-06 26.6 0.0 0.17 12.2 0.0 3.0 2 1 1 3 3 3 2 AAA ATPase domain Fer4_6 PF12837.7 gi|218884559|ref|YP_002428941.1| - 8.2e-06 25.7 12.2 0.00024 21.0 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|218884559|ref|YP_002428941.1| - 2.8e-05 24.1 9.5 0.00028 20.9 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|218884559|ref|YP_002428941.1| - 4.3e-05 23.5 0.0 0.21 11.5 0.0 3.2 3 0 0 3 3 3 2 RsgA GTPase Rad17 PF03215.15 gi|218884559|ref|YP_002428941.1| - 5.1e-05 23.3 0.0 0.064 13.2 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain Fer4_21 PF14697.6 gi|218884559|ref|YP_002428941.1| - 7.5e-05 22.8 7.1 0.00015 21.9 7.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_15 PF13175.6 gi|218884559|ref|YP_002428941.1| - 0.00012 21.9 0.1 0.14 11.8 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain Fer4_7 PF12838.7 gi|218884559|ref|YP_002428941.1| - 0.00014 22.4 6.1 0.00052 20.5 6.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_18 PF13238.6 gi|218884559|ref|YP_002428941.1| - 0.00023 21.7 0.1 1.3 9.6 0.0 3.2 2 1 1 3 3 3 2 AAA domain AAA_23 PF13476.6 gi|218884559|ref|YP_002428941.1| - 0.00023 21.7 1.3 0.14 12.6 0.1 2.5 2 0 0 2 2 2 1 AAA domain Fer4_2 PF12797.7 gi|218884559|ref|YP_002428941.1| - 0.00025 21.0 1.2 0.00025 21.0 1.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain AAA PF00004.29 gi|218884559|ref|YP_002428941.1| - 0.00031 21.2 0.1 0.43 11.0 0.0 2.9 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|218884559|ref|YP_002428941.1| - 0.00037 20.3 0.3 0.022 14.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|218884559|ref|YP_002428941.1| - 0.00044 19.9 0.5 0.84 9.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_9 PF13187.6 gi|218884559|ref|YP_002428941.1| - 0.00044 20.3 7.1 0.00088 19.4 7.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain SbcCD_C PF13558.6 gi|218884559|ref|YP_002428941.1| - 0.00083 19.5 0.1 1.1 9.5 0.0 3.1 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.6 gi|218884559|ref|YP_002428941.1| - 0.0012 18.8 0.5 0.062 13.3 0.0 3.4 3 1 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|218884559|ref|YP_002428941.1| - 0.0017 18.1 0.5 0.32 10.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|218884559|ref|YP_002428941.1| - 0.005 17.2 0.0 2.4 8.6 0.0 2.6 2 0 0 2 2 2 1 RNA helicase MMR_HSR1 PF01926.23 gi|218884559|ref|YP_002428941.1| - 0.0063 16.6 2.8 3 8.0 0.4 2.8 3 0 0 3 3 2 2 50S ribosome-binding GTPase SRP54 PF00448.22 gi|218884559|ref|YP_002428941.1| - 0.0064 16.1 0.4 0.82 9.3 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|218884559|ref|YP_002428941.1| - 0.0066 16.6 0.0 0.67 10.1 0.0 3.0 3 1 0 3 3 2 1 AAA domain Fer4_16 PF13484.6 gi|218884559|ref|YP_002428941.1| - 0.019 15.9 8.9 0.033 15.1 2.8 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain ATP_bind_1 PF03029.17 gi|218884559|ref|YP_002428941.1| - 0.023 14.5 0.7 4.2 7.1 0.0 3.6 4 0 0 4 4 4 0 Conserved hypothetical ATP binding protein KAP_NTPase PF07693.14 gi|218884559|ref|YP_002428941.1| - 0.034 13.4 0.0 0.49 9.6 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain DUF359 PF04019.12 gi|218884559|ref|YP_002428941.1| - 0.036 13.7 0.4 0.24 11.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF359) Thymidylate_kin PF02223.17 gi|218884559|ref|YP_002428941.1| - 0.036 13.7 0.0 9.5 5.8 0.0 3.0 3 0 0 3 3 3 0 Thymidylate kinase AAA_13 PF13166.6 gi|218884559|ref|YP_002428941.1| - 0.047 12.3 0.0 0.89 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|218884559|ref|YP_002428941.1| - 0.069 13.4 0.6 15 5.8 0.2 3.2 2 2 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|218884559|ref|YP_002428941.1| - 0.077 12.2 0.0 2 7.5 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|218884559|ref|YP_002428941.1| - 0.11 12.4 0.7 1.4 8.9 0.0 2.5 2 0 0 2 2 2 0 NACHT domain MeaB PF03308.16 gi|218884559|ref|YP_002428941.1| - 0.13 11.2 0.5 12 4.7 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|218884559|ref|YP_002428941.1| - 0.24 11.3 0.9 3.1 7.7 0.1 2.5 2 0 0 2 2 2 0 NTPase MobB PF03205.14 gi|218884559|ref|YP_002428941.1| - 0.25 11.2 0.5 2.7 7.9 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Fer4_17 PF13534.6 gi|218884559|ref|YP_002428941.1| - 0.28 11.8 7.0 0.13 12.8 1.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF87 PF01935.17 gi|218884559|ref|YP_002428941.1| - 0.34 11.0 3.4 21 5.1 1.0 3.0 2 1 0 2 2 2 0 Helicase HerA, central domain Fer4_4 PF12800.7 gi|218884559|ref|YP_002428941.1| - 0.95 10.1 13.9 0.091 13.3 3.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|218884559|ref|YP_002428941.1| - 0.98 10.5 14.8 0.17 12.9 4.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|218884559|ref|YP_002428941.1| - 1.3 9.5 6.8 0.15 12.6 1.3 2.0 1 1 1 2 2 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|218884559|ref|YP_002428941.1| - 5.9 7.5 7.3 0.33 11.5 1.4 2.1 2 0 0 2 2 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|218884559|ref|YP_002428941.1| - 7.8 7.3 7.2 3 8.6 2.6 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain zinc_ribbon_2 PF13240.6 gi|218884560|ref|YP_002428942.1| - 1.7e-05 24.4 0.5 0.052 13.3 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|218884560|ref|YP_002428942.1| - 1.8e-05 24.3 0.3 4.9e-05 22.9 0.3 1.8 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|218884560|ref|YP_002428942.1| - 5.3e-05 23.0 0.7 9.1e-05 22.2 0.7 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|218884560|ref|YP_002428942.1| - 0.00011 22.2 0.3 0.00017 21.5 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-TFIIB PF13453.6 gi|218884560|ref|YP_002428942.1| - 0.00023 20.4 2.1 0.00043 19.6 2.1 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger DUF2387 PF09526.10 gi|218884560|ref|YP_002428942.1| - 0.0027 17.8 0.6 0.0046 17.1 0.6 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.11 gi|218884560|ref|YP_002428942.1| - 0.0081 16.1 0.6 0.017 15.0 0.6 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|218884560|ref|YP_002428942.1| - 0.0085 16.5 1.2 0.014 15.7 1.2 1.6 1 1 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|218884560|ref|YP_002428942.1| - 0.0089 16.0 0.3 0.015 15.2 0.3 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain eIF-5_eIF-2B PF01873.17 gi|218884560|ref|YP_002428942.1| - 0.01 15.7 1.5 0.015 15.1 0.5 1.7 2 0 0 2 2 2 0 Domain found in IF2B/IF5 DNA_ligase_ZBD PF03119.16 gi|218884560|ref|YP_002428942.1| - 0.014 15.4 0.5 0.014 15.4 0.5 2.3 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|218884560|ref|YP_002428942.1| - 0.017 14.5 2.0 0.83 9.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.21 gi|218884560|ref|YP_002428942.1| - 0.027 14.7 0.8 0.045 14.0 0.6 1.5 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain zf-C4_Topoisom PF01396.19 gi|218884560|ref|YP_002428942.1| - 0.033 14.0 3.6 0.61 9.9 0.3 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|218884560|ref|YP_002428942.1| - 0.041 13.8 1.5 0.48 10.4 1.8 2.2 1 1 1 2 2 2 0 Nudix N-terminal CDC24_OB3 PF17244.2 gi|218884560|ref|YP_002428942.1| - 0.051 13.3 0.0 0.051 13.3 0.0 1.1 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 zf-FPG_IleRS PF06827.14 gi|218884560|ref|YP_002428942.1| - 0.052 13.4 1.2 0.21 11.5 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc-ribbons_6 PF07191.12 gi|218884560|ref|YP_002428942.1| - 0.053 13.5 0.8 0.25 11.4 0.6 1.8 1 1 0 1 1 1 0 zinc-ribbons Zn_ribbon_recom PF13408.6 gi|218884560|ref|YP_002428942.1| - 0.07 13.7 3.7 5.7 7.5 0.0 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf_UBZ PF18439.1 gi|218884560|ref|YP_002428942.1| - 0.081 12.5 1.0 3.6 7.3 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger PriA_CRR PF18319.1 gi|218884560|ref|YP_002428942.1| - 0.087 12.8 0.5 1.4 8.9 0.5 2.1 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain C1_1 PF00130.22 gi|218884560|ref|YP_002428942.1| - 0.11 12.5 0.2 0.16 11.9 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 gi|218884560|ref|YP_002428942.1| - 0.2 11.8 4.2 2.8 8.1 0.3 2.3 1 1 2 3 3 3 0 Zinc ribbon domain Auto_anti-p27 PF06677.12 gi|218884560|ref|YP_002428942.1| - 0.28 11.4 3.3 1 9.6 3.4 1.8 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0547 PF10571.9 gi|218884560|ref|YP_002428942.1| - 0.29 11.2 2.1 19 5.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_L37e PF01907.19 gi|218884560|ref|YP_002428942.1| - 0.34 11.1 2.2 0.92 9.7 2.2 1.7 1 1 0 1 1 1 0 Ribosomal protein L37e HypA PF01155.19 gi|218884560|ref|YP_002428942.1| - 0.42 10.7 3.2 4 7.5 0.5 2.6 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|218884560|ref|YP_002428942.1| - 3.6 7.4 5.4 5.7 6.8 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zn-ribbon_14 PF16503.5 gi|218884560|ref|YP_002428942.1| - 9.1 5.9 8.6 7.3 6.2 1.0 3.0 3 0 0 3 3 3 0 Zinc-ribbon Ribosomal_S17e PF00833.18 gi|218884561|ref|YP_002428943.1| - 1.1e-18 67.3 0.3 1.2e-18 67.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4231 PF14015.6 gi|218884564|ref|YP_002428946.1| - 0.066 13.7 4.3 2.3 8.7 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) RTX PF02382.15 gi|218884564|ref|YP_002428946.1| - 0.12 12.0 0.4 0.18 11.5 0.4 1.1 1 0 0 1 1 1 0 N-terminal domain in RTX protein DUF2964 PF11177.8 gi|218884564|ref|YP_002428946.1| - 1.7 8.9 0.0 1.7 8.9 0.0 3.9 3 2 0 3 3 3 0 Protein of unknown function (DUF2964) DUF4423 PF14394.6 gi|218884565|ref|YP_002428947.1| - 0.033 13.9 0.0 0.085 12.6 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) SelB-wing_2 PF09106.11 gi|218884565|ref|YP_002428947.1| - 0.11 12.7 0.1 0.26 11.5 0.1 1.6 1 0 0 1 1 1 0 Elongation factor SelB, winged helix AdoHcyase PF05221.17 gi|218884566|ref|YP_002428948.1| - 5.3e-70 235.9 0.0 2.9e-40 138.3 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|218884566|ref|YP_002428948.1| - 3.6e-54 183.2 0.0 5.7e-54 182.6 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|218884566|ref|YP_002428948.1| - 1.5e-08 34.2 0.2 3e-08 33.2 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|218884566|ref|YP_002428948.1| - 1.5e-06 27.9 0.0 2.8e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|218884566|ref|YP_002428948.1| - 0.068 13.4 0.2 0.5 10.6 0.1 2.4 2 0 0 2 2 2 0 TrkA-N domain zf-RNPHF PF08080.12 gi|218884566|ref|YP_002428948.1| - 0.094 12.7 0.2 0.18 11.8 0.2 1.4 1 0 0 1 1 1 0 RNPHF zinc finger TGT_C2 PF14810.6 gi|218884567|ref|YP_002428949.1| - 8e-17 61.1 0.0 1.7e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|218884567|ref|YP_002428949.1| - 9.5e-14 51.1 0.1 1.4e-13 50.6 0.1 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|218884567|ref|YP_002428949.1| - 0.00019 21.6 0.1 0.00037 20.7 0.1 1.5 1 0 0 1 1 1 1 UPF0113 PUA domain PAC2 PF09754.9 gi|218884568|ref|YP_002428950.1| - 7e-30 104.6 0.0 8.5e-30 104.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family APG6_N PF17675.1 gi|218884568|ref|YP_002428950.1| - 0.56 10.7 5.7 7.3 7.1 5.7 2.0 1 1 0 1 1 1 0 Apg6 coiled-coil region TGT PF01702.18 gi|218884569|ref|YP_002428951.1| - 8.5e-64 215.9 0.0 1.1e-63 215.5 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|218884569|ref|YP_002428951.1| - 4.1e-08 33.2 0.0 8.4e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C1 PF14809.6 gi|218884569|ref|YP_002428951.1| - 0.017 15.4 0.1 0.075 13.4 0.1 2.0 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Lsm_C PF14894.6 gi|218884570|ref|YP_002428952.1| - 4.6e-28 96.8 0.8 3e-27 94.2 0.5 2.1 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.22 gi|218884570|ref|YP_002428952.1| - 1.1e-07 31.4 0.1 1.8e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|218884570|ref|YP_002428952.1| - 0.00028 20.9 0.0 0.0005 20.2 0.0 1.4 1 0 0 1 1 1 1 Ataxin 2 SM domain Gemin6 PF06372.12 gi|218884570|ref|YP_002428952.1| - 0.00071 19.2 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Gemin6 protein LSM14 PF12701.7 gi|218884570|ref|YP_002428952.1| - 0.11 12.6 0.1 0.26 11.4 0.1 1.6 1 1 0 1 1 1 0 Scd6-like Sm domain RNA_pol_RpbG PF16992.5 gi|218884571|ref|YP_002428953.1| - 7.5e-12 45.4 0.1 7.9e-12 45.3 0.1 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G Cpn60_TCP1 PF00118.24 gi|218884572|ref|YP_002428954.1| - 7.2e-178 592.2 12.8 8.2e-178 592.0 12.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Pyr_redox_2 PF07992.14 gi|218884573|ref|YP_002428955.1| - 6.4e-46 156.9 0.2 7.4e-46 156.7 0.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|218884573|ref|YP_002428955.1| - 3.8e-23 82.2 1.0 1.9e-18 66.8 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|218884573|ref|YP_002428955.1| - 6.8e-14 52.2 3.0 2.8e-10 40.6 0.2 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|218884573|ref|YP_002428955.1| - 1.6e-12 47.3 1.7 1.1e-06 28.0 1.2 3.6 3 1 1 4 4 4 3 FAD binding domain FAD_oxidored PF12831.7 gi|218884573|ref|YP_002428955.1| - 1.2e-09 38.0 0.9 4.9e-07 29.5 0.0 3.0 2 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|218884573|ref|YP_002428955.1| - 8.9e-09 34.5 1.1 0.00055 18.8 0.2 3.2 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|218884573|ref|YP_002428955.1| - 9.3e-09 34.8 11.3 5.9e-06 25.6 0.6 3.8 4 1 0 4 4 4 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|218884573|ref|YP_002428955.1| - 3.8e-07 29.6 0.8 0.00013 21.3 0.3 2.5 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.19 gi|218884573|ref|YP_002428955.1| - 6.1e-07 29.0 2.2 3.8e-05 23.1 0.5 2.5 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.24 gi|218884573|ref|YP_002428955.1| - 0.00014 21.6 6.6 0.011 15.4 2.5 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|218884573|ref|YP_002428955.1| - 0.00029 21.0 2.7 0.011 15.9 0.3 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|218884573|ref|YP_002428955.1| - 0.001 19.5 0.3 0.53 10.8 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|218884573|ref|YP_002428955.1| - 0.0014 17.6 2.9 0.46 9.3 0.8 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|218884573|ref|YP_002428955.1| - 0.0025 16.9 0.8 0.03 13.4 0.2 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|218884573|ref|YP_002428955.1| - 0.0075 15.6 0.1 0.31 10.3 0.0 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain PALP PF00291.25 gi|218884573|ref|YP_002428955.1| - 0.039 13.4 0.5 0.66 9.3 0.1 2.2 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme K_oxygenase PF13434.6 gi|218884573|ref|YP_002428955.1| - 0.063 12.4 0.4 37 3.3 0.0 3.0 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|218884573|ref|YP_002428955.1| - 0.091 12.7 0.7 8.3 6.4 0.0 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding Aldo_ket_red PF00248.21 gi|218884574|ref|YP_002428956.1| - 2.7e-72 243.4 0.0 3.1e-72 243.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Antimicrobial20 PF08256.11 gi|218884574|ref|YP_002428956.1| - 3.5 8.4 4.5 18 6.3 2.4 2.6 2 0 0 2 2 2 0 Aurein-like antibiotic peptide DUF2122 PF09895.9 gi|218884575|ref|YP_002428957.1| - 2.9e-29 101.6 0.0 3.7e-29 101.2 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) INCENP_N PF12178.8 gi|218884575|ref|YP_002428957.1| - 0.17 11.9 0.1 2.3 8.3 0.0 2.2 2 0 0 2 2 2 0 Chromosome passenger complex (CPC) protein INCENP N terminal DNA_methylase PF00145.17 gi|218884576|ref|YP_002428958.1| - 2.7e-45 155.2 0.0 2.3e-31 109.4 0.0 2.1 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|218884576|ref|YP_002428958.1| - 0.014 15.0 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TFIIE_alpha PF02002.17 gi|218884577|ref|YP_002428959.1| - 4.9e-10 39.2 0.4 2.5e-09 36.9 0.1 1.9 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|218884577|ref|YP_002428959.1| - 0.0016 17.9 0.5 0.0029 17.1 0.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.19 gi|218884577|ref|YP_002428959.1| - 0.0081 16.2 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|218884577|ref|YP_002428959.1| - 0.045 14.1 0.1 0.071 13.5 0.1 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar SieB PF14163.6 gi|218884577|ref|YP_002428959.1| - 0.051 13.1 0.2 0.1 12.1 0.0 1.5 2 0 0 2 2 2 0 Super-infection exclusion protein B Phage_endo_I PF05367.11 gi|218884577|ref|YP_002428959.1| - 0.078 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Phage endonuclease I NDUFB10 PF10249.9 gi|218884577|ref|YP_002428959.1| - 0.087 13.3 0.3 0.12 12.8 0.3 1.2 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase subunit 10 ADK_lid PF05191.14 gi|218884577|ref|YP_002428959.1| - 0.09 12.8 0.3 0.25 11.4 0.3 1.8 1 0 0 1 1 1 0 Adenylate kinase, active site lid zinc_ribbon_4 PF13717.6 gi|218884577|ref|YP_002428959.1| - 0.1 12.6 0.2 0.21 11.6 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain AAA PF00004.29 gi|218884579|ref|YP_002428961.1| - 3.2e-43 147.3 0.3 4.5e-42 143.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|218884579|ref|YP_002428961.1| - 3.8e-16 58.6 0.0 9.4e-16 57.4 0.0 1.6 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|218884579|ref|YP_002428961.1| - 1.1e-10 41.3 0.2 3e-10 39.9 0.2 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|218884579|ref|YP_002428961.1| - 6.2e-07 29.7 0.4 2.6e-06 27.7 0.0 2.2 3 0 0 3 3 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|218884579|ref|YP_002428961.1| - 3.6e-06 27.5 0.2 0.00068 20.1 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|218884579|ref|YP_002428961.1| - 7.1e-06 25.8 0.0 2e-05 24.4 0.0 1.8 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|218884579|ref|YP_002428961.1| - 7.2e-06 26.0 0.1 2.6e-05 24.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Prot_ATP_OB_N PF17758.1 gi|218884579|ref|YP_002428961.1| - 3.7e-05 23.3 0.2 0.00014 21.5 0.2 2.0 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain DUF815 PF05673.13 gi|218884579|ref|YP_002428961.1| - 0.00031 20.0 0.1 0.00076 18.7 0.0 1.7 2 0 0 2 2 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|218884579|ref|YP_002428961.1| - 0.00066 20.0 0.1 0.0085 16.4 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|218884579|ref|YP_002428961.1| - 0.0011 19.5 0.1 0.016 15.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|218884579|ref|YP_002428961.1| - 0.0011 18.3 0.0 0.0024 17.3 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|218884579|ref|YP_002428961.1| - 0.0016 18.4 0.5 0.026 14.5 0.1 2.8 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|218884579|ref|YP_002428961.1| - 0.003 16.9 0.4 0.024 13.9 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin TIP49 PF06068.13 gi|218884579|ref|YP_002428961.1| - 0.0035 16.6 0.0 0.0065 15.7 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_24 PF13479.6 gi|218884579|ref|YP_002428961.1| - 0.0044 16.8 0.1 0.038 13.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|218884579|ref|YP_002428961.1| - 0.0047 17.2 0.1 0.012 15.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|218884579|ref|YP_002428961.1| - 0.0049 16.9 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|218884579|ref|YP_002428961.1| - 0.0064 16.2 0.1 0.022 14.5 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|218884579|ref|YP_002428961.1| - 0.0067 16.6 0.1 0.02 15.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|218884579|ref|YP_002428961.1| - 0.0082 16.1 0.1 0.039 13.9 0.0 2.0 2 0 0 2 2 2 1 NACHT domain RNA_helicase PF00910.22 gi|218884579|ref|YP_002428961.1| - 0.0089 16.4 0.0 0.029 14.8 0.0 1.9 2 0 0 2 2 1 1 RNA helicase AAA_25 PF13481.6 gi|218884579|ref|YP_002428961.1| - 0.018 14.6 0.1 0.11 12.0 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_17 PF13207.6 gi|218884579|ref|YP_002428961.1| - 0.022 15.2 0.4 0.053 14.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain Vps4_C PF09336.10 gi|218884579|ref|YP_002428961.1| - 0.031 14.3 0.1 0.16 12.0 0.1 2.2 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain ABC_tran PF00005.27 gi|218884579|ref|YP_002428961.1| - 0.033 14.7 0.1 0.1 13.1 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_7 PF12775.7 gi|218884579|ref|YP_002428961.1| - 0.061 12.8 0.0 0.13 11.8 0.0 1.5 1 1 0 1 1 1 0 P-loop containing dynein motor region ATPase PF06745.13 gi|218884579|ref|YP_002428961.1| - 0.063 12.6 0.7 0.23 10.8 0.1 2.2 2 1 0 2 2 2 0 KaiC TFIID-18kDa PF02269.16 gi|218884579|ref|YP_002428961.1| - 0.066 13.2 0.3 0.19 11.8 0.3 1.7 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit Sigma54_activat PF00158.26 gi|218884579|ref|YP_002428961.1| - 0.099 12.3 0.2 0.27 10.9 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|218884579|ref|YP_002428961.1| - 0.11 11.7 0.0 0.23 10.6 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|218884579|ref|YP_002428961.1| - 0.13 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE HTH_3 PF01381.22 gi|218884580|ref|YP_002428962.1| - 5.9e-11 42.3 1.2 1e-10 41.5 1.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|218884580|ref|YP_002428962.1| - 2.1e-09 37.6 0.9 3.4e-09 36.9 0.9 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|218884580|ref|YP_002428962.1| - 4.1e-09 36.3 0.4 8.1e-09 35.4 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|218884580|ref|YP_002428962.1| - 0.00013 21.8 0.4 0.00029 20.6 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4428 PF14471.6 gi|218884580|ref|YP_002428962.1| - 0.0052 16.7 1.0 0.012 15.5 1.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) HTH_37 PF13744.6 gi|218884580|ref|YP_002428962.1| - 0.063 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DZR PF12773.7 gi|218884580|ref|YP_002428962.1| - 0.14 12.2 3.2 0.31 11.1 3.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon MqsA_antitoxin PF15731.5 gi|218884580|ref|YP_002428962.1| - 0.26 11.4 4.9 2.5 8.2 3.5 2.6 1 1 1 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HypA PF01155.19 gi|218884580|ref|YP_002428962.1| - 1.1 9.3 5.2 0.97 9.5 3.1 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2703 PF10865.8 gi|218884580|ref|YP_002428962.1| - 1.1 9.4 6.9 1.1 9.4 3.7 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF2703) zf-DNL PF05180.12 gi|218884580|ref|YP_002428962.1| - 2.3 8.2 7.1 2.1 8.4 5.4 1.7 2 0 0 2 2 2 0 DNL zinc finger MMR_HSR1 PF01926.23 gi|218884581|ref|YP_002428963.1| - 6.5e-20 71.3 0.0 1.3e-19 70.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|218884581|ref|YP_002428963.1| - 2.4e-14 53.7 4.3 5e-14 52.7 4.3 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|218884581|ref|YP_002428963.1| - 1.5e-12 47.4 0.0 2.5e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP-bdg_N PF13167.6 gi|218884581|ref|YP_002428963.1| - 1.2e-10 41.9 0.1 5.8e-10 39.7 0.1 2.1 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal GTP_EFTU PF00009.27 gi|218884581|ref|YP_002428963.1| - 1.6e-06 27.8 0.7 3.1e-05 23.6 0.2 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|218884581|ref|YP_002428963.1| - 4.1e-06 26.3 0.0 9e-06 25.3 0.0 1.6 1 1 0 1 1 1 1 ADP-ribosylation factor family PduV-EutP PF10662.9 gi|218884581|ref|YP_002428963.1| - 4.1e-05 23.3 0.7 0.0003 20.6 0.7 2.2 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|218884581|ref|YP_002428963.1| - 9e-05 22.4 0.2 0.00019 21.4 0.2 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain cobW PF02492.19 gi|218884581|ref|YP_002428963.1| - 0.00092 18.8 2.9 0.08 12.5 0.1 2.6 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|218884581|ref|YP_002428963.1| - 0.0039 17.1 0.1 2.5 8.0 0.2 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 gi|218884581|ref|YP_002428963.1| - 0.0065 17.0 0.4 0.02 15.4 0.2 1.9 1 1 1 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|218884581|ref|YP_002428963.1| - 0.038 14.5 0.1 0.077 13.5 0.1 1.4 1 0 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.17 gi|218884581|ref|YP_002428963.1| - 0.12 12.1 1.0 0.9 9.3 0.1 2.2 1 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|218884581|ref|YP_002428963.1| - 0.14 12.2 0.1 1.3 9.1 0.0 2.1 2 0 0 2 2 2 0 Dynamin family Trm56 PF01994.16 gi|218884582|ref|YP_002428964.1| - 1.4e-49 166.9 0.0 1.8e-49 166.6 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 gi|218884582|ref|YP_002428964.1| - 0.1 11.9 0.1 0.17 11.2 0.0 1.5 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP Imm25 PF15564.6 gi|218884583|ref|YP_002428965.1| - 0.0066 16.4 0.2 0.019 14.9 0.0 1.8 2 0 0 2 2 2 1 Immunity protein 25 DUF2730 PF10805.8 gi|218884584|ref|YP_002428966.1| - 2.3e-08 34.1 1.1 0.014 15.4 0.0 3.2 1 1 2 3 3 3 2 Protein of unknown function (DUF2730) NPV_P10 PF05531.12 gi|218884584|ref|YP_002428966.1| - 4.8e-08 33.4 23.6 0.0011 19.3 3.4 3.6 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|218884584|ref|YP_002428966.1| - 5.4e-08 32.9 13.5 0.00048 20.1 4.7 3.3 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) Snapin_Pallidin PF14712.6 gi|218884584|ref|YP_002428966.1| - 1.2e-05 25.7 3.7 0.0058 17.0 1.0 2.8 1 1 3 4 4 4 2 Snapin/Pallidin XhlA PF10779.9 gi|218884584|ref|YP_002428966.1| - 1.4e-05 25.1 3.4 0.12 12.6 0.2 3.9 3 1 0 3 3 3 1 Haemolysin XhlA Baculo_PEP_C PF04513.12 gi|218884584|ref|YP_002428966.1| - 1.6e-05 25.0 40.7 0.00023 21.2 10.2 3.4 1 1 2 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4795 PF16043.5 gi|218884584|ref|YP_002428966.1| - 1.7e-05 24.6 2.0 0.0014 18.3 0.1 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4795) DUF948 PF06103.11 gi|218884584|ref|YP_002428966.1| - 3.8e-05 23.9 21.8 0.0061 16.8 5.9 3.6 1 1 1 3 3 3 2 Bacterial protein of unknown function (DUF948) EzrA PF06160.12 gi|218884584|ref|YP_002428966.1| - 7.8e-05 21.0 1.3 0.00017 19.9 1.3 1.5 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA CLZ PF16526.5 gi|218884584|ref|YP_002428966.1| - 0.00014 22.2 0.0 0.62 10.5 0.0 3.8 1 1 3 4 4 4 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FlaC_arch PF05377.11 gi|218884584|ref|YP_002428966.1| - 0.00019 21.7 15.7 2.2 8.8 0.3 4.4 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) Sec34 PF04136.15 gi|218884584|ref|YP_002428966.1| - 0.00035 20.5 9.8 0.35 10.7 2.2 3.2 1 1 2 3 3 3 1 Sec34-like family Laminin_II PF06009.12 gi|218884584|ref|YP_002428966.1| - 0.00067 19.7 22.2 0.26 11.3 1.6 3.2 1 1 2 3 3 3 2 Laminin Domain II Tweety PF04906.13 gi|218884584|ref|YP_002428966.1| - 0.00085 18.1 11.5 0.044 12.5 4.0 2.1 1 1 1 2 2 2 2 Tweety COG2 PF06148.11 gi|218884584|ref|YP_002428966.1| - 0.00099 19.2 8.6 1.6 8.9 0.1 3.3 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 T3SSipB PF16535.5 gi|218884584|ref|YP_002428966.1| - 0.0011 19.4 6.7 1.5 9.3 0.7 3.2 1 1 2 3 3 3 1 Type III cell invasion protein SipB Prominin PF05478.11 gi|218884584|ref|YP_002428966.1| - 0.0012 16.9 9.9 0.0018 16.3 9.9 1.2 1 0 0 1 1 1 1 Prominin DUF16 PF01519.16 gi|218884584|ref|YP_002428966.1| - 0.0013 19.1 4.0 0.59 10.7 0.3 3.2 1 1 2 3 3 3 1 Protein of unknown function DUF16 HSBP1 PF06825.12 gi|218884584|ref|YP_002428966.1| - 0.0021 17.9 0.3 0.73 9.7 0.0 3.7 3 1 0 3 3 3 1 Heat shock factor binding protein 1 Phasin PF05597.11 gi|218884584|ref|YP_002428966.1| - 0.0024 17.9 7.2 0.045 13.8 0.2 2.4 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Spc7 PF08317.11 gi|218884584|ref|YP_002428966.1| - 0.0026 16.7 0.9 0.016 14.1 1.1 1.6 1 1 1 2 2 2 2 Spc7 kinetochore protein LXG PF04740.12 gi|218884584|ref|YP_002428966.1| - 0.0032 17.2 2.7 0.0032 17.2 2.7 2.2 1 1 1 2 2 2 1 LXG domain of WXG superfamily DUF713 PF05218.14 gi|218884584|ref|YP_002428966.1| - 0.0035 17.1 0.3 0.17 11.6 0.2 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF713) BLOC1_2 PF10046.9 gi|218884584|ref|YP_002428966.1| - 0.0036 17.6 6.6 0.079 13.3 0.6 3.2 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.9 gi|218884584|ref|YP_002428966.1| - 0.0038 16.2 5.6 0.03 13.3 1.8 2.0 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 RmuC PF02646.16 gi|218884584|ref|YP_002428966.1| - 0.0047 16.1 6.7 0.71 9.0 0.5 3.0 1 1 2 3 3 3 2 RmuC family WEMBL PF05701.11 gi|218884584|ref|YP_002428966.1| - 0.0048 15.7 3.4 0.0067 15.2 3.4 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light MCPsignal PF00015.21 gi|218884584|ref|YP_002428966.1| - 0.0048 16.7 30.2 0.076 12.8 9.0 3.2 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF3829 PF12889.7 gi|218884584|ref|YP_002428966.1| - 0.0056 16.2 9.0 0.11 11.9 0.7 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3829) DUF5082 PF16888.5 gi|218884584|ref|YP_002428966.1| - 0.0069 16.7 13.8 0.047 14.0 2.4 3.0 1 1 1 2 2 2 1 Domain of unknown function (DUF5082) CENP-F_leu_zip PF10473.9 gi|218884584|ref|YP_002428966.1| - 0.009 16.0 0.1 0.015 15.3 0.1 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Seryl_tRNA_N PF02403.22 gi|218884584|ref|YP_002428966.1| - 0.0091 16.2 3.4 0.25 11.6 0.9 2.6 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain TBCC_N PF16752.5 gi|218884584|ref|YP_002428966.1| - 0.0096 16.4 3.4 1.6 9.2 2.6 2.7 1 1 1 2 2 2 1 Tubulin-specific chaperone C N-terminal domain AAA_13 PF13166.6 gi|218884584|ref|YP_002428966.1| - 0.01 14.6 8.3 0.014 14.1 8.3 1.1 1 0 0 1 1 1 0 AAA domain TMPIT PF07851.13 gi|218884584|ref|YP_002428966.1| - 0.01 15.1 2.8 0.023 13.9 2.0 1.8 1 1 1 2 2 2 0 TMPIT-like protein Tropomyosin PF00261.20 gi|218884584|ref|YP_002428966.1| - 0.012 15.0 0.3 0.5 9.7 0.2 2.1 1 1 1 2 2 2 0 Tropomyosin WXG100 PF06013.12 gi|218884584|ref|YP_002428966.1| - 0.016 15.5 4.2 2.7 8.3 0.3 3.7 1 1 2 3 3 3 0 Proteins of 100 residues with WXG Syntaxin_2 PF14523.6 gi|218884584|ref|YP_002428966.1| - 0.016 15.6 19.2 0.32 11.4 9.4 3.4 1 1 2 3 3 3 0 Syntaxin-like protein Nup54 PF13874.6 gi|218884584|ref|YP_002428966.1| - 0.019 15.1 0.4 0.072 13.2 0.2 2.0 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF3584 PF12128.8 gi|218884584|ref|YP_002428966.1| - 0.023 12.3 0.4 0.03 11.9 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Mod_r PF07200.13 gi|218884584|ref|YP_002428966.1| - 0.028 14.5 0.3 0.049 13.7 0.3 1.5 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein T7SS_ESX_EspC PF10824.8 gi|218884584|ref|YP_002428966.1| - 0.038 14.5 15.0 0.31 11.6 0.5 3.6 1 1 2 3 3 3 0 Excreted virulence factor EspC, type VII ESX diderm COG6 PF06419.11 gi|218884584|ref|YP_002428966.1| - 0.048 11.9 13.0 1 7.5 0.5 3.2 1 1 3 4 4 4 0 Conserved oligomeric complex COG6 ALIX_LYPXL_bnd PF13949.6 gi|218884584|ref|YP_002428966.1| - 0.049 12.9 5.1 0.076 12.3 5.1 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Alanine_zipper PF11839.8 gi|218884584|ref|YP_002428966.1| - 0.052 13.9 11.6 0.69 10.3 2.1 3.7 1 1 3 4 4 2 0 Alanine-zipper, major outer membrane lipoprotein SesA PF17107.5 gi|218884584|ref|YP_002428966.1| - 0.058 13.6 7.7 5.3 7.2 4.2 2.7 1 1 2 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases HsbA PF12296.8 gi|218884584|ref|YP_002428966.1| - 0.064 13.7 37.2 0.41 11.1 8.0 3.8 1 1 2 3 3 3 0 Hydrophobic surface binding protein A Syntaxin PF00804.25 gi|218884584|ref|YP_002428966.1| - 0.068 12.8 6.9 0.85 9.3 2.7 2.2 1 1 1 2 2 2 0 Syntaxin DUF724 PF05266.14 gi|218884584|ref|YP_002428966.1| - 0.071 12.9 1.1 0.3 10.9 0.9 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Fib_alpha PF08702.10 gi|218884584|ref|YP_002428966.1| - 0.095 12.9 14.6 0.21 11.7 8.4 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family APG17 PF04108.12 gi|218884584|ref|YP_002428966.1| - 0.1 11.7 6.0 2.3 7.3 3.7 2.2 1 1 1 2 2 2 0 Autophagy protein Apg17 Rx_N PF18052.1 gi|218884584|ref|YP_002428966.1| - 0.11 12.8 0.0 3.2 8.1 0.0 2.4 2 1 1 3 3 2 0 Rx N-terminal domain TPR_MLP1_2 PF07926.12 gi|218884584|ref|YP_002428966.1| - 0.13 12.3 1.2 0.54 10.3 0.2 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein TRPM_tetra PF16519.5 gi|218884584|ref|YP_002428966.1| - 0.15 12.2 3.0 69 3.7 0.0 3.9 3 1 1 4 4 4 0 Tetramerisation domain of TRPM Sec3_C PF09763.9 gi|218884584|ref|YP_002428966.1| - 0.15 10.4 4.8 0.68 8.2 2.8 2.4 1 1 2 3 3 3 0 Exocyst complex component Sec3 HOOK PF05622.12 gi|218884584|ref|YP_002428966.1| - 0.16 10.1 0.4 0.22 9.7 0.4 1.1 1 0 0 1 1 1 0 HOOK protein Bacillus_HBL PF05791.11 gi|218884584|ref|YP_002428966.1| - 0.17 11.7 11.9 0.083 12.7 6.9 2.2 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) TssO PF17561.2 gi|218884584|ref|YP_002428966.1| - 0.2 11.8 4.8 14 5.8 0.1 3.2 1 1 2 3 3 3 0 Type VI secretion system, TssO Fzo_mitofusin PF04799.13 gi|218884584|ref|YP_002428966.1| - 0.2 11.2 1.7 0.52 9.8 0.3 2.2 1 1 1 2 2 2 0 fzo-like conserved region Uds1 PF15456.6 gi|218884584|ref|YP_002428966.1| - 0.21 11.8 0.6 0.36 11.0 0.6 1.3 1 0 0 1 1 1 0 Up-regulated During Septation AIP3 PF03915.13 gi|218884584|ref|YP_002428966.1| - 0.22 10.5 9.6 0.36 9.9 9.6 1.2 1 0 0 1 1 1 0 Actin interacting protein 3 FPP PF05911.11 gi|218884584|ref|YP_002428966.1| - 0.24 9.6 12.7 0.32 9.1 12.7 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil RPW8 PF05659.11 gi|218884584|ref|YP_002428966.1| - 0.28 10.9 0.8 1.4 8.6 0.2 2.2 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 AATF-Che1 PF13339.6 gi|218884584|ref|YP_002428966.1| - 0.29 11.8 6.8 90 3.7 6.8 2.5 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Filament PF00038.21 gi|218884584|ref|YP_002428966.1| - 0.33 10.5 1.3 1.8 8.1 0.8 1.9 1 1 1 2 2 2 0 Intermediate filament protein DUF2408 PF10303.9 gi|218884584|ref|YP_002428966.1| - 0.35 11.4 3.2 2.2 8.8 3.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) ApoO PF09769.9 gi|218884584|ref|YP_002428966.1| - 0.38 10.7 10.8 1.3 9.0 0.8 4.2 2 1 2 4 4 3 0 Apolipoprotein O MscS_porin PF12795.7 gi|218884584|ref|YP_002428966.1| - 0.38 10.3 6.1 1.5 8.3 5.0 2.0 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain She9_MDM33 PF05546.11 gi|218884584|ref|YP_002428966.1| - 0.4 10.4 2.0 1.8 8.3 0.5 2.2 1 1 1 2 2 2 0 She9 / Mdm33 family LOH1CR12 PF10158.9 gi|218884584|ref|YP_002428966.1| - 0.41 10.7 4.8 0.57 10.2 1.7 2.3 1 1 1 2 2 2 0 Tumour suppressor protein COG5 PF10392.9 gi|218884584|ref|YP_002428966.1| - 0.45 10.7 13.7 0.85 9.8 5.3 2.5 1 1 1 2 2 2 0 Golgi transport complex subunit 5 SKA1 PF07160.12 gi|218884584|ref|YP_002428966.1| - 0.46 10.3 5.7 4.2 7.1 4.5 2.6 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 Arfaptin PF06456.13 gi|218884584|ref|YP_002428966.1| - 0.59 9.7 2.8 1.2 8.7 1.3 1.9 1 1 1 2 2 2 0 Arfaptin-like domain Uso1_p115_C PF04871.13 gi|218884584|ref|YP_002428966.1| - 0.63 10.4 1.8 1.4 9.3 0.8 1.8 1 1 2 3 3 3 0 Uso1 / p115 like vesicle tethering protein, C terminal region YlbD_coat PF14071.6 gi|218884584|ref|YP_002428966.1| - 1.1 9.5 11.0 1.8 8.8 1.9 3.2 1 1 2 3 3 3 0 Putative coat protein Cauli_DNA-bind PF03310.13 gi|218884584|ref|YP_002428966.1| - 1.1 9.3 8.6 4.5 7.4 2.2 2.5 2 0 0 2 2 2 0 Caulimovirus DNA-binding protein Allexi_40kDa PF05549.11 gi|218884584|ref|YP_002428966.1| - 1.6 8.2 17.5 2.8 7.4 3.0 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein ISG65-75 PF11727.8 gi|218884584|ref|YP_002428966.1| - 1.9 7.7 6.7 3 7.0 2.9 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein LPP PF04728.13 gi|218884584|ref|YP_002428966.1| - 2.2 8.7 33.9 4.4 7.8 3.5 5.3 1 1 4 5 5 5 0 Lipoprotein leucine-zipper T4SS PF07996.11 gi|218884584|ref|YP_002428966.1| - 2.3 8.6 12.7 6.4 7.1 6.0 2.3 1 1 1 2 2 2 0 Type IV secretion system proteins TBK1_CCD1 PF18394.1 gi|218884584|ref|YP_002428966.1| - 2.4 7.7 8.5 6.1 6.3 4.0 2.3 1 1 1 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 Lectin_N PF03954.14 gi|218884584|ref|YP_002428966.1| - 3.2 7.5 13.0 1.1 9.1 2.5 2.5 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain Laminin_I PF06008.14 gi|218884584|ref|YP_002428966.1| - 3.2 7.4 10.2 1.1 8.9 5.3 1.9 1 1 0 1 1 1 0 Laminin Domain I DUF745 PF05335.13 gi|218884584|ref|YP_002428966.1| - 5.3 6.7 11.9 1.7 8.4 6.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF745) PIN_8 PF18476.1 gi|218884584|ref|YP_002428966.1| - 7.1 6.4 5.5 34 4.2 5.5 1.9 1 1 0 1 1 1 0 PIN like domain End3 PF12761.7 gi|218884584|ref|YP_002428966.1| - 7.2 6.7 6.0 17 5.5 0.7 2.9 1 1 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Rogdi_lz PF10259.9 gi|218884584|ref|YP_002428966.1| - 7.4 5.9 12.2 8 5.8 2.7 2.2 1 1 1 2 2 2 0 Rogdi leucine zipper containing protein DUF3502 PF12010.8 gi|218884584|ref|YP_002428966.1| - 9.1 6.9 6.3 1.1e+02 3.5 6.3 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3502) DUF2959 PF11172.8 gi|218884584|ref|YP_002428966.1| - 10 6.2 9.4 75 3.4 4.1 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) Peptidase_S8 PF00082.22 gi|218884585|ref|YP_002428967.1| - 1.9e-38 132.5 0.1 3.1e-38 131.7 0.1 1.3 1 0 0 1 1 1 1 Subtilase family RHH_3 PF12651.7 gi|218884587|ref|YP_002428969.1| - 0.36 10.8 2.5 0.6 10.1 0.1 2.5 2 1 0 2 2 2 0 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|218884588|ref|YP_002428970.1| - 0.00017 21.4 0.1 0.00017 21.4 0.1 2.0 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family CopG_antitoxin PF12441.8 gi|218884588|ref|YP_002428970.1| - 0.0092 16.5 0.0 0.019 15.5 0.0 1.5 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system RHH_5 PF07878.11 gi|218884588|ref|YP_002428970.1| - 0.081 12.8 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 PP-binding PF00550.25 gi|218884588|ref|YP_002428970.1| - 0.12 12.8 0.2 0.23 11.8 0.2 1.5 1 0 0 1 1 1 0 Phosphopantetheine attachment site Proteasome PF00227.26 gi|218884589|ref|YP_002428971.1| - 3.4e-54 183.2 0.0 3.8e-54 183.1 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit PIN PF01850.21 gi|218884592|ref|YP_002428974.1| - 8.4e-07 29.5 1.8 1.5e-06 28.7 1.8 1.4 1 1 0 1 1 1 1 PIN domain YpjP PF14005.6 gi|218884593|ref|YP_002428975.1| - 0.0042 17.1 0.1 0.0049 16.9 0.1 1.1 1 0 0 1 1 1 1 YpjP-like protein LEM PF03020.15 gi|218884593|ref|YP_002428975.1| - 0.024 14.2 0.8 0.05 13.2 0.0 1.8 2 0 0 2 2 2 0 LEM domain tRNA_NucTran2_2 PF13735.6 gi|218884593|ref|YP_002428975.1| - 0.071 13.1 0.2 0.093 12.7 0.2 1.1 1 0 0 1 1 1 0 tRNA nucleotidyltransferase domain 2 putative MMR_HSR1 PF01926.23 gi|218884595|ref|YP_002428977.1| - 6.2e-21 74.6 0.2 1.5e-20 73.4 0.0 1.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|218884595|ref|YP_002428977.1| - 1.6e-18 66.2 0.1 3.1e-18 65.3 0.1 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|218884595|ref|YP_002428977.1| - 1.4e-09 37.7 0.8 1.7e-09 37.4 0.1 1.6 2 0 0 2 2 2 1 Ferrous iron transport protein B NOG1_N PF17835.1 gi|218884595|ref|YP_002428977.1| - 2.4e-07 30.9 0.1 4.6e-07 29.9 0.1 1.5 1 1 0 1 1 1 1 NOG1 N-terminal helical domain GTP_EFTU PF00009.27 gi|218884595|ref|YP_002428977.1| - 0.00081 19.0 0.2 0.088 12.3 0.1 2.7 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|218884595|ref|YP_002428977.1| - 0.0013 18.7 3.2 0.64 9.9 0.1 3.0 3 1 0 3 3 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|218884595|ref|YP_002428977.1| - 0.0042 17.2 1.0 0.42 10.6 0.1 2.4 2 0 0 2 2 2 1 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|218884595|ref|YP_002428977.1| - 0.0064 16.5 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|218884595|ref|YP_002428977.1| - 0.013 15.2 0.0 0.082 12.5 0.0 2.1 1 1 0 1 1 1 0 Ras family MeaB PF03308.16 gi|218884595|ref|YP_002428977.1| - 0.029 13.3 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AIG1 PF04548.16 gi|218884595|ref|YP_002428977.1| - 0.037 13.3 0.1 0.061 12.6 0.1 1.4 1 0 0 1 1 1 0 AIG1 family Roc PF08477.13 gi|218884595|ref|YP_002428977.1| - 0.043 14.0 0.1 6.4 7.0 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NTPase_1 PF03266.15 gi|218884595|ref|YP_002428977.1| - 0.044 13.7 0.1 0.12 12.3 0.1 1.7 1 0 0 1 1 1 0 NTPase AAA_28 PF13521.6 gi|218884595|ref|YP_002428977.1| - 0.048 13.9 0.0 0.3 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|218884595|ref|YP_002428977.1| - 0.072 13.1 0.2 0.34 10.9 0.0 2.2 2 1 1 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|218884595|ref|YP_002428977.1| - 0.096 13.2 0.0 0.26 11.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|218884595|ref|YP_002428977.1| - 0.15 12.4 0.1 0.6 10.5 0.1 1.9 1 1 1 2 2 2 0 AAA ATPase domain cobW PF02492.19 gi|218884595|ref|YP_002428977.1| - 0.16 11.6 0.1 15 5.1 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RTC PF01137.21 gi|218884596|ref|YP_002428978.1| - 1.3e-80 269.7 0.0 1.5e-80 269.5 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|218884596|ref|YP_002428978.1| - 1.1e-20 74.0 0.0 1.8e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_like PF01467.26 gi|218884597|ref|YP_002428979.1| - 2e-12 47.5 0.0 2.7e-12 47.1 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|218884597|ref|YP_002428979.1| - 0.094 11.9 0.0 0.94 8.6 0.0 1.9 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Beta-Casp PF10996.8 gi|218884598|ref|YP_002428980.1| - 8.7e-24 83.9 0.0 1.8e-23 82.9 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|218884598|ref|YP_002428980.1| - 4.8e-19 68.1 2.5 1.4e-18 66.6 2.5 1.9 1 0 0 1 1 1 1 KH domain Lactamase_B_6 PF16661.5 gi|218884598|ref|YP_002428980.1| - 5.9e-17 61.7 0.0 1.1e-15 57.6 0.0 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|218884598|ref|YP_002428980.1| - 1.2e-16 60.3 0.1 4.6e-15 55.3 0.0 2.6 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|218884598|ref|YP_002428980.1| - 7.5e-10 38.7 0.1 2.4e-09 37.0 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|218884598|ref|YP_002428980.1| - 3.4e-09 37.0 2.3 1.1e-07 32.1 2.4 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|218884598|ref|YP_002428980.1| - 0.0038 17.1 0.1 0.026 14.4 0.0 2.4 3 0 0 3 3 3 1 Beta-lactamase superfamily domain DUF4365 PF14280.6 gi|218884598|ref|YP_002428980.1| - 0.068 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4365) Proteasome PF00227.26 gi|218884599|ref|YP_002428981.1| - 2.8e-52 177.0 0.7 3.2e-52 176.8 0.7 1.0 1 0 0 1 1 1 1 Proteasome subunit Fe-ADH_2 PF13685.6 gi|218884600|ref|YP_002428982.1| - 1.8e-77 260.4 0.1 2.2e-77 260.2 0.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|218884600|ref|YP_002428982.1| - 1.8e-23 82.9 0.5 2.6e-22 79.2 0.5 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|218884600|ref|YP_002428982.1| - 2.1e-07 30.4 0.0 0.00093 18.4 0.0 2.9 2 1 0 2 2 2 2 3-dehydroquinate synthase UPF0146 PF03686.13 gi|218884600|ref|YP_002428982.1| - 0.035 14.0 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) FKBP_C PF00254.28 gi|218884601|ref|YP_002428983.1| - 6.2e-07 29.7 0.0 2.4e-06 27.7 0.0 1.9 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|218884601|ref|YP_002428983.1| - 8.8e-06 25.7 1.1 4.9e-05 23.3 0.5 2.3 2 0 0 2 2 2 1 FKBP26_C-terminal DUF3553 PF12073.8 gi|218884601|ref|YP_002428983.1| - 0.029 14.1 0.1 0.075 12.8 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) MS_channel PF00924.18 gi|218884601|ref|YP_002428983.1| - 0.071 12.7 0.4 0.18 11.3 0.4 1.6 1 0 0 1 1 1 0 Mechanosensitive ion channel AphA_like PF14557.6 gi|218884601|ref|YP_002428983.1| - 0.088 12.5 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator PUA PF01472.20 gi|218884602|ref|YP_002428984.1| - 4.4e-19 68.2 0.8 5.8e-19 67.8 0.8 1.2 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|218884602|ref|YP_002428984.1| - 2.6e-11 43.6 0.1 5.4e-11 42.6 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|218884602|ref|YP_002428984.1| - 0.028 14.7 0.1 0.046 14.0 0.1 1.4 1 0 0 1 1 1 0 UPF0113 PUA domain Toprim_4 PF13662.6 gi|218884603|ref|YP_002428985.1| - 1.5e-09 38.2 0.3 1.1e-08 35.4 0.1 2.4 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|218884603|ref|YP_002428985.1| - 3.4e-05 24.2 0.0 0.00013 22.3 0.0 2.0 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|218884603|ref|YP_002428985.1| - 6.6e-05 23.1 0.2 0.00024 21.3 0.0 2.1 2 0 0 2 2 2 1 Toprim domain Ribosomal_L37e PF01907.19 gi|218884604|ref|YP_002428986.1| - 4.3e-25 87.6 12.0 4.8e-25 87.5 12.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DUF35_N PF12172.8 gi|218884604|ref|YP_002428986.1| - 4.2 7.3 9.7 43 4.1 9.7 2.1 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) LSM PF01423.22 gi|218884605|ref|YP_002428987.1| - 7.2e-23 80.1 0.3 7.9e-23 79.9 0.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|218884605|ref|YP_002428987.1| - 0.012 15.8 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain DNA_pol_B PF00136.21 gi|218884606|ref|YP_002428988.1| - 3.8e-72 243.5 0.0 5.5e-72 242.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|218884606|ref|YP_002428988.1| - 1.2e-41 143.0 0.1 5.2e-22 78.4 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|218884606|ref|YP_002428988.1| - 1.1e-08 35.2 0.0 2.7e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|218884606|ref|YP_002428988.1| - 3.8e-06 26.7 0.0 7.1e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|218884606|ref|YP_002428988.1| - 0.064 12.1 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral eRF1_1 PF03463.15 gi|218884607|ref|YP_002428989.1| - 4.6e-23 81.6 0.0 7.7e-23 80.9 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|218884607|ref|YP_002428989.1| - 2.2e-18 66.8 0.1 5.5e-18 65.5 0.1 1.7 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|218884607|ref|YP_002428989.1| - 2.8e-12 47.1 0.0 7.9e-12 45.6 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 2 baeRF_family10 PF18854.1 gi|218884607|ref|YP_002428989.1| - 0.00091 19.5 0.1 0.0036 17.5 0.0 2.2 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 NTP_transf_2 PF01909.23 gi|218884608|ref|YP_002428990.1| - 1.2e-05 25.5 0.0 2.5e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|218884608|ref|YP_002428990.1| - 6.4e-05 23.0 0.0 0.00012 22.1 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase ACP_syn_III_C PF08541.10 gi|218884608|ref|YP_002428990.1| - 0.042 14.0 0.0 0.084 13.1 0.0 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Peptidase_M50 PF02163.22 gi|218884609|ref|YP_002428991.1| - 2.2e-15 56.6 8.9 1.4e-14 54.0 8.9 2.1 1 1 0 1 1 1 1 Peptidase family M50 PDZ PF00595.24 gi|218884609|ref|YP_002428991.1| - 2.4e-08 34.2 0.0 4.6e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|218884609|ref|YP_002428991.1| - 2.2e-07 30.6 0.0 4.8e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|218884609|ref|YP_002428991.1| - 1.7e-06 28.2 0.0 3.3e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Ribosomal_S12 PF17487.2 gi|218884609|ref|YP_002428991.1| - 1.5 9.6 10.0 38 5.1 0.0 2.9 2 1 0 2 2 2 0 Ribosomal protein S12 PspC PF04024.12 gi|218884611|ref|YP_002428993.1| - 0.053 13.3 0.4 0.066 13.0 0.4 1.1 1 0 0 1 1 1 0 PspC domain PALP PF00291.25 gi|218884612|ref|YP_002428994.1| - 2.4e-62 211.0 0.0 2.8e-62 210.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Rubredoxin_2 PF18073.1 gi|218884612|ref|YP_002428994.1| - 0.0068 16.1 7.9 0.015 15.0 7.9 1.6 1 0 0 1 1 1 1 Rubredoxin metal binding domain HypA PF01155.19 gi|218884612|ref|YP_002428994.1| - 0.063 13.3 0.2 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|218884612|ref|YP_002428994.1| - 0.072 13.2 0.6 0.13 12.4 0.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|218884612|ref|YP_002428994.1| - 0.077 12.5 0.3 0.16 11.5 0.3 1.5 1 0 0 1 1 1 0 Mu-like prophage protein Com Zn_ribbon_SprT PF17283.2 gi|218884612|ref|YP_002428994.1| - 0.11 12.4 1.5 0.74 9.8 0.2 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|218884612|ref|YP_002428994.1| - 0.21 11.4 3.0 0.38 10.5 3.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|218884612|ref|YP_002428994.1| - 0.53 10.2 3.2 2.6 8.0 2.8 2.2 2 1 0 2 2 2 0 Putative transposase DNA-binding domain Rubredoxin PF00301.20 gi|218884612|ref|YP_002428994.1| - 1.5 8.9 5.1 8 6.6 0.6 2.6 2 0 0 2 2 2 0 Rubredoxin Ribosomal_S26e PF01283.19 gi|218884613|ref|YP_002428995.1| - 2.5e-23 82.5 2.6 3.1e-23 82.2 2.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|218884613|ref|YP_002428995.1| - 0.012 15.8 1.9 0.19 11.9 0.6 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain DZR PF12773.7 gi|218884613|ref|YP_002428995.1| - 0.025 14.6 1.0 0.26 11.3 0.1 2.1 2 0 0 2 2 2 0 Double zinc ribbon zf_UBZ PF18439.1 gi|218884613|ref|YP_002428995.1| - 0.046 13.3 0.1 0.093 12.3 0.1 1.5 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger PIN PF01850.21 gi|218884614|ref|YP_002428996.1| - 7.7e-08 32.9 3.1 6.4e-07 29.9 3.1 1.9 1 1 0 1 1 1 1 PIN domain RHH_1 PF01402.21 gi|218884615|ref|YP_002428997.1| - 3.8e-08 33.0 1.0 6.1e-08 32.3 0.2 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Fur_reg_FbpA PF13076.6 gi|218884615|ref|YP_002428997.1| - 0.0024 17.5 0.1 0.0071 16.0 0.0 1.9 2 0 0 2 2 2 1 Fur-regulated basic protein A GP24_25 PF17388.2 gi|218884615|ref|YP_002428997.1| - 0.064 13.2 0.3 0.071 13.1 0.3 1.2 1 0 0 1 1 1 0 Tail assembly gene products 24 & 25 ParD_antitoxin PF03693.14 gi|218884615|ref|YP_002428997.1| - 0.15 12.5 0.4 0.37 11.2 0.4 1.7 1 1 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Methyltransf_31 PF13847.6 gi|218884617|ref|YP_002428999.1| - 5.1e-07 29.6 0.0 6.1e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|218884617|ref|YP_002428999.1| - 3.6e-06 27.6 0.0 5.2e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|218884617|ref|YP_002428999.1| - 4.5e-06 26.3 0.1 2e-05 24.2 0.1 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 CMAS PF02353.20 gi|218884617|ref|YP_002428999.1| - 2e-05 24.0 0.0 2.2e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|218884617|ref|YP_002428999.1| - 3e-05 23.5 0.0 4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PrmA PF06325.13 gi|218884617|ref|YP_002428999.1| - 0.00012 21.6 0.0 0.00015 21.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|218884617|ref|YP_002428999.1| - 0.00018 21.4 0.0 0.0004 20.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.12 gi|218884617|ref|YP_002428999.1| - 0.00019 21.1 0.1 0.00021 21.0 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.12 gi|218884617|ref|YP_002428999.1| - 0.0021 18.7 0.0 0.0028 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|218884617|ref|YP_002428999.1| - 0.0044 16.8 0.0 0.0051 16.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TrmK PF04816.12 gi|218884617|ref|YP_002428999.1| - 0.036 13.6 0.1 0.19 11.2 0.0 2.0 1 1 2 3 3 3 0 tRNA (adenine(22)-N(1))-methyltransferase MTS PF05175.14 gi|218884617|ref|YP_002428999.1| - 0.037 13.6 0.0 0.049 13.2 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|218884617|ref|YP_002428999.1| - 0.039 13.2 0.0 0.051 12.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_23 PF13489.6 gi|218884617|ref|YP_002428999.1| - 0.042 13.7 0.0 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|218884617|ref|YP_002428999.1| - 0.073 13.8 0.0 0.14 12.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|218884617|ref|YP_002428999.1| - 0.13 11.8 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase GCD14 PF08704.10 gi|218884619|ref|YP_002429001.1| - 8.6e-33 114.0 0.0 1.9e-29 103.1 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|218884619|ref|YP_002429001.1| - 3.5e-07 30.1 0.0 4.7e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|218884619|ref|YP_002429001.1| - 4.1e-06 26.7 0.0 7.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|218884619|ref|YP_002429001.1| - 2.9e-05 24.7 0.0 4.9e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|218884619|ref|YP_002429001.1| - 0.00029 20.2 0.0 0.00042 19.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|218884619|ref|YP_002429001.1| - 0.0013 19.3 0.0 0.0049 17.5 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain GCD14_N PF14801.6 gi|218884619|ref|YP_002429001.1| - 0.0037 17.1 0.0 0.0074 16.1 0.0 1.5 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_24 PF13578.6 gi|218884619|ref|YP_002429001.1| - 0.0038 18.2 0.0 0.0074 17.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|218884619|ref|YP_002429001.1| - 0.013 16.2 0.0 0.028 15.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|218884619|ref|YP_002429001.1| - 0.016 14.9 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Fibrillarin PF01269.17 gi|218884619|ref|YP_002429001.1| - 0.021 13.9 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin rRNA_methylase PF06962.12 gi|218884619|ref|YP_002429001.1| - 0.029 14.3 0.0 0.066 13.2 0.0 1.5 1 0 0 1 1 1 0 Putative rRNA methylase Methyltransf_4 PF02390.17 gi|218884619|ref|YP_002429001.1| - 0.04 13.4 0.0 0.064 12.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase EVE PF01878.18 gi|218884620|ref|YP_002429002.1| - 0.047 13.7 0.0 0.068 13.2 0.0 1.3 1 0 0 1 1 1 0 EVE domain RHH_1 PF01402.21 gi|218884621|ref|YP_002429003.1| - 3.9e-10 39.3 0.3 5.6e-10 38.8 0.3 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|218884621|ref|YP_002429003.1| - 2e-05 24.8 0.0 2.1e-05 24.7 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|218884621|ref|YP_002429003.1| - 3.6e-05 24.1 0.0 3.8e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|218884621|ref|YP_002429003.1| - 0.001 18.9 0.1 0.0012 18.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB PMT_2 PF13231.6 gi|218884623|ref|YP_002429005.1| - 3.3e-11 43.6 13.8 3.3e-11 43.6 13.8 2.9 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|218884623|ref|YP_002429005.1| - 0.0001 22.0 17.9 0.0001 22.0 17.9 3.5 2 2 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase EpsG PF14897.6 gi|218884623|ref|YP_002429005.1| - 0.0029 16.9 14.6 0.0029 16.9 14.6 3.3 4 1 0 4 4 4 2 EpsG family DNA_pol_B PF00136.21 gi|218884625|ref|YP_002429007.1| - 2.3e-45 155.2 0.0 5.5e-45 153.9 0.0 1.6 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|218884625|ref|YP_002429007.1| - 1.8e-28 99.7 0.2 4.2e-28 98.5 0.2 1.6 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|218884625|ref|YP_002429007.1| - 2.8e-05 24.2 0.1 0.00017 21.6 0.0 2.4 3 0 0 3 3 3 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|218884625|ref|YP_002429007.1| - 0.016 14.9 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB NAC PF01849.18 gi|218884626|ref|YP_002429008.1| - 8.3e-13 48.1 2.4 1.9e-12 46.9 0.3 2.2 2 0 0 2 2 2 1 NAC domain Clp_N PF02861.20 gi|218884626|ref|YP_002429008.1| - 0.016 15.3 0.0 0.92 9.7 0.0 2.3 2 0 0 2 2 2 0 Clp amino terminal domain, pathogenicity island component RTC4 PF14474.6 gi|218884626|ref|YP_002429008.1| - 0.027 14.6 0.0 0.038 14.1 0.0 1.3 1 0 0 1 1 1 0 RTC4-like domain Beta-Casp PF10996.8 gi|218884627|ref|YP_002429009.1| - 1.1e-19 70.7 0.0 2.4e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_6 PF16661.5 gi|218884627|ref|YP_002429009.1| - 9.7e-13 48.0 0.0 1.8e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|218884627|ref|YP_002429009.1| - 1e-12 47.8 0.0 2.4e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|218884627|ref|YP_002429009.1| - 8.7e-10 38.9 0.4 1.9e-09 37.8 0.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|218884627|ref|YP_002429009.1| - 7.8e-05 22.3 0.1 0.00022 20.8 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|218884627|ref|YP_002429009.1| - 0.012 15.5 0.0 0.043 13.7 0.0 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain GTP_EFTU PF00009.27 gi|218884628|ref|YP_002429010.1| - 3.7e-61 206.1 0.2 6.7e-61 205.2 0.2 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|218884628|ref|YP_002429010.1| - 1.4e-30 105.6 0.0 1.3e-29 102.5 0.0 2.5 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|218884628|ref|YP_002429010.1| - 3.5e-21 75.0 0.0 1.1e-20 73.5 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|218884628|ref|YP_002429010.1| - 6.9e-21 74.1 0.1 1.8e-20 72.8 0.1 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|218884628|ref|YP_002429010.1| - 1.5e-13 50.9 0.0 3.8e-13 49.6 0.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|218884628|ref|YP_002429010.1| - 1.6e-05 24.9 0.1 4.2e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase HIGH_NTase1_ass PF16581.5 gi|218884628|ref|YP_002429010.1| - 0.014 15.4 0.0 0.036 14.0 0.0 1.7 1 0 0 1 1 1 0 Cytidyltransferase-related C-terminal region SRPRB PF09439.10 gi|218884628|ref|YP_002429010.1| - 0.034 13.6 0.0 0.076 12.4 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit HisK_N PF09385.10 gi|218884628|ref|YP_002429010.1| - 0.047 13.7 0.1 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase N terminal RF3_C PF16658.5 gi|218884628|ref|YP_002429010.1| - 0.052 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain Septin PF00735.18 gi|218884628|ref|YP_002429010.1| - 0.063 12.5 0.1 0.1 11.8 0.1 1.3 1 0 0 1 1 1 0 Septin Ras PF00071.22 gi|218884628|ref|YP_002429010.1| - 0.092 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Ras family RsgA_GTPase PF03193.16 gi|218884628|ref|YP_002429010.1| - 0.14 12.0 1.0 0.43 10.5 0.2 2.0 1 1 0 2 2 2 0 RsgA GTPase Prefoldin_2 PF01920.20 gi|218884630|ref|YP_002429012.1| - 1.8e-18 66.4 13.2 2e-18 66.3 13.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.17 gi|218884630|ref|YP_002429012.1| - 0.0017 18.3 6.0 0.23 11.4 0.1 2.2 1 1 1 2 2 2 2 Prefoldin subunit FlaC_arch PF05377.11 gi|218884630|ref|YP_002429012.1| - 0.006 16.9 11.1 0.2 12.1 2.1 2.3 2 0 0 2 2 2 2 Flagella accessory protein C (FlaC) DUF3584 PF12128.8 gi|218884630|ref|YP_002429012.1| - 0.0069 14.0 3.7 0.008 13.8 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) CdvA PF18822.1 gi|218884630|ref|YP_002429012.1| - 0.027 14.3 8.1 0.052 13.4 0.2 2.2 2 0 0 2 2 2 0 CdvA-like coiled-coil domain DUF4164 PF13747.6 gi|218884630|ref|YP_002429012.1| - 0.033 14.5 4.0 0.35 11.2 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF3287 PF11690.8 gi|218884630|ref|YP_002429012.1| - 0.063 13.0 4.3 0.093 12.5 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3287) PP-binding_2 PF14573.6 gi|218884630|ref|YP_002429012.1| - 0.075 13.3 1.2 0.12 12.6 1.2 1.4 1 1 0 1 1 1 0 Acyl-carrier Nsp1_C PF05064.13 gi|218884630|ref|YP_002429012.1| - 0.16 11.8 9.2 0.1 12.4 2.1 2.2 1 1 1 2 2 2 0 Nsp1-like C-terminal region RtcB PF01139.17 gi|218884630|ref|YP_002429012.1| - 0.2 10.8 1.8 0.24 10.6 1.8 1.1 1 0 0 1 1 1 0 tRNA-splicing ligase RtcB Spc7 PF08317.11 gi|218884630|ref|YP_002429012.1| - 0.23 10.3 8.0 0.3 9.9 8.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Glu-tRNAGln PF02686.15 gi|218884630|ref|YP_002429012.1| - 0.33 11.3 3.0 0.43 10.9 2.1 1.7 1 1 1 2 2 2 0 Glu-tRNAGln amidotransferase C subunit FbpA PF05833.11 gi|218884630|ref|YP_002429012.1| - 0.43 9.3 8.7 0.14 10.9 0.2 2.0 1 1 1 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) DASH_Dad3 PF08656.10 gi|218884630|ref|YP_002429012.1| - 0.43 10.7 4.4 0.65 10.1 1.7 2.3 1 1 1 2 2 2 0 DASH complex subunit Dad3 TPR_MLP1_2 PF07926.12 gi|218884630|ref|YP_002429012.1| - 0.45 10.6 8.1 5.2 7.1 8.1 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein GreA_GreB_N PF03449.15 gi|218884630|ref|YP_002429012.1| - 0.57 10.4 7.4 4.9 7.4 0.4 2.8 2 1 0 2 2 2 0 Transcription elongation factor, N-terminal DUF3450 PF11932.8 gi|218884630|ref|YP_002429012.1| - 0.6 9.4 8.3 3.2 7.0 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4140 PF13600.6 gi|218884630|ref|YP_002429012.1| - 1 9.9 5.7 10 6.6 0.6 2.2 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) zf-C4H2 PF10146.9 gi|218884630|ref|YP_002429012.1| - 1.1 9.5 8.3 0.73 10.1 2.4 2.0 1 1 1 2 2 2 0 Zinc finger-containing protein APG6_N PF17675.1 gi|218884630|ref|YP_002429012.1| - 1.7 9.1 10.7 1.4 9.4 1.6 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region bZIP_1 PF00170.21 gi|218884630|ref|YP_002429012.1| - 2.3 8.4 11.7 0.74 10.0 5.9 2.3 2 1 0 2 2 2 0 bZIP transcription factor Pcc1 PF09341.10 gi|218884631|ref|YP_002429013.1| - 0.00019 21.5 0.0 0.00022 21.3 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.18 gi|218884632|ref|YP_002429014.1| - 0.074 13.2 0.0 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 Brix domain Ribosomal_L37ae PF01780.19 gi|218884633|ref|YP_002429015.1| - 9.5e-34 115.4 2.9 1e-33 115.2 2.9 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|218884633|ref|YP_002429015.1| - 4.8e-08 32.9 2.3 6.9e-08 32.4 2.3 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|218884633|ref|YP_002429015.1| - 1.5e-06 28.0 0.5 1.9e-06 27.7 0.5 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|218884633|ref|YP_002429015.1| - 0.00029 21.2 0.9 0.00044 20.6 0.9 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|218884633|ref|YP_002429015.1| - 0.0022 17.5 0.0 0.003 17.0 0.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding DUF4428 PF14471.6 gi|218884633|ref|YP_002429015.1| - 0.011 15.6 0.4 0.018 14.9 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Elf1 PF05129.13 gi|218884633|ref|YP_002429015.1| - 0.028 14.4 0.6 0.06 13.4 0.6 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like CpXC PF14353.6 gi|218884633|ref|YP_002429015.1| - 0.039 14.0 1.2 0.46 10.5 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zf-ISL3 PF14690.6 gi|218884633|ref|YP_002429015.1| - 0.055 14.1 2.4 0.72 10.6 0.4 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf_Rg PF17915.1 gi|218884633|ref|YP_002429015.1| - 0.055 12.9 0.3 0.087 12.2 0.3 1.3 1 0 0 1 1 1 0 Reverse gyrase zinc finger zinc_ribbon_13 PF09855.9 gi|218884633|ref|YP_002429015.1| - 0.081 13.1 0.2 2.9 8.1 0.0 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Rep_fac-A_C PF08646.10 gi|218884633|ref|YP_002429015.1| - 0.092 12.5 0.2 0.11 12.2 0.2 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain DUF2318 PF10080.9 gi|218884633|ref|YP_002429015.1| - 0.1 12.7 0.1 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-Sec23_Sec24 PF04810.15 gi|218884633|ref|YP_002429015.1| - 0.16 12.0 1.8 1.5 9.0 0.0 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-ribbon_3 PF13248.6 gi|218884633|ref|YP_002429015.1| - 0.22 11.0 7.0 27 4.3 7.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|218884633|ref|YP_002429015.1| - 1.3 9.4 7.8 3.1 8.1 7.8 1.6 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase TFIIS_C PF01096.18 gi|218884633|ref|YP_002429015.1| - 1.9 8.4 7.3 8.5 6.3 1.4 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-H2C2_2 PF13465.6 gi|218884633|ref|YP_002429015.1| - 4.8 7.8 8.1 1 9.9 1.9 2.2 1 1 1 2 2 2 0 Zinc-finger double domain zinc_ribbon_2 PF13240.6 gi|218884633|ref|YP_002429015.1| - 5.8 6.8 10.6 9 6.2 2.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RNase_PH PF01138.21 gi|218884634|ref|YP_002429016.1| - 8.3e-27 94.3 0.0 1.6e-26 93.3 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|218884634|ref|YP_002429016.1| - 2.2e-11 43.6 0.2 4.3e-11 42.7 0.2 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|218884635|ref|YP_002429017.1| - 1.8e-35 122.3 0.0 2.3e-35 122.0 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|218884635|ref|YP_002429017.1| - 6.1e-14 51.8 0.2 1.4e-13 50.6 0.3 1.6 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|218884636|ref|YP_002429018.1| - 1.2e-08 35.1 0.0 2.1e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|218884636|ref|YP_002429018.1| - 4.5e-05 23.2 0.0 0.0001 22.1 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|218884636|ref|YP_002429018.1| - 0.00039 20.2 0.4 0.0011 18.8 0.1 2.0 2 1 0 2 2 2 1 KH domain SBDS PF01172.18 gi|218884637|ref|YP_002429019.1| - 2.8e-23 81.8 0.1 4.7e-23 81.1 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|218884637|ref|YP_002429019.1| - 4.9e-20 71.7 1.4 7.2e-20 71.1 1.4 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|218884637|ref|YP_002429019.1| - 0.0067 16.4 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus Proteasome PF00227.26 gi|218884638|ref|YP_002429020.1| - 4.5e-54 182.8 0.3 6.2e-54 182.4 0.3 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|218884638|ref|YP_002429020.1| - 9.6e-15 53.9 2.6 1.1e-14 53.8 0.4 2.3 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|218884639|ref|YP_002429021.1| - 2.8e-12 46.8 0.0 4.9e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.16 gi|218884640|ref|YP_002429022.1| - 2.8e-07 30.2 0.0 3.7e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 DUF3862 PF12978.7 gi|218884640|ref|YP_002429022.1| - 0.16 11.8 0.0 0.21 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3862) RNA_binding PF01877.17 gi|218884641|ref|YP_002429023.1| - 5.8e-31 107.2 0.0 7.8e-31 106.8 0.0 1.2 1 0 0 1 1 1 1 RNA binding DUF2760 PF10816.8 gi|218884641|ref|YP_002429023.1| - 0.0039 17.0 0.0 0.0076 16.1 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF2760) Ribosomal_L15e PF00827.17 gi|218884642|ref|YP_002429024.1| - 7.9e-82 273.6 5.3 1e-81 273.3 5.3 1.2 1 0 0 1 1 1 1 Ribosomal L15 MMR_HSR1_C PF08438.10 gi|218884643|ref|YP_002429025.1| - 2.4e-33 115.0 0.0 6.1e-33 113.7 0.0 1.7 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|218884643|ref|YP_002429025.1| - 6.8e-21 74.5 0.0 1.7e-20 73.2 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|218884643|ref|YP_002429025.1| - 1.6e-12 47.3 0.0 3.7e-12 46.1 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|218884643|ref|YP_002429025.1| - 7.7e-07 28.8 0.5 1.3e-05 24.8 0.1 2.8 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|218884643|ref|YP_002429025.1| - 0.0064 16.7 0.0 0.5 10.6 0.0 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF933) phiKZ_IP PF12699.7 gi|218884643|ref|YP_002429025.1| - 0.0074 15.5 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 phiKZ-like phage internal head proteins AAA_21 PF13304.6 gi|218884643|ref|YP_002429025.1| - 0.01 15.7 1.0 0.089 12.6 0.2 2.1 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|218884643|ref|YP_002429025.1| - 0.023 15.2 0.1 0.076 13.5 0.0 1.8 2 0 0 2 2 2 0 ABC transporter MMR_HSR1_Xtn PF16897.5 gi|218884643|ref|YP_002429025.1| - 0.043 13.8 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 gi|218884643|ref|YP_002429025.1| - 0.058 12.9 0.3 5 6.6 0.1 2.9 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain AAA_23 PF13476.6 gi|218884643|ref|YP_002429025.1| - 0.062 13.8 1.4 0.14 12.6 0.3 2.0 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|218884643|ref|YP_002429025.1| - 0.067 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2095 PF09868.9 gi|218884644|ref|YP_002429026.1| - 5e-18 65.3 0.2 1.3e-16 60.8 0.2 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) HeH PF12949.7 gi|218884644|ref|YP_002429026.1| - 0.016 14.9 0.1 0.54 10.0 0.0 2.3 2 0 0 2 2 2 0 HeH/LEM domain ORF6C PF10552.9 gi|218884644|ref|YP_002429026.1| - 0.024 14.7 0.0 0.043 13.9 0.0 1.3 1 0 0 1 1 1 0 ORF6C domain NTP_transferase PF00483.23 gi|218884645|ref|YP_002429027.1| - 5.7e-30 104.7 0.0 8.7e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|218884645|ref|YP_002429027.1| - 1.3e-15 56.4 3.1 3.7e-06 26.5 0.0 5.5 3 2 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|218884645|ref|YP_002429027.1| - 8.4e-13 49.0 0.0 1.2e-12 48.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|218884645|ref|YP_002429027.1| - 5.4e-06 26.3 0.0 7.9e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|218884645|ref|YP_002429027.1| - 0.0028 17.4 3.5 0.15 11.9 0.1 3.8 3 1 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|218884645|ref|YP_002429027.1| - 0.0044 15.2 0.2 0.0067 14.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|218884645|ref|YP_002429027.1| - 0.1 11.5 0.3 10 4.9 0.2 2.1 1 1 1 2 2 2 0 L-fucokinase CTP_transf_3 PF02348.19 gi|218884645|ref|YP_002429027.1| - 0.21 11.5 0.0 0.45 10.4 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase Ribosomal_S3Ae PF01015.18 gi|218884646|ref|YP_002429028.1| - 5.3e-71 238.4 1.9 6.3e-71 238.1 1.9 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Post_transc_reg PF13797.6 gi|218884646|ref|YP_002429028.1| - 0.21 11.5 4.5 0.59 10.0 0.1 2.7 3 0 0 3 3 3 0 Post-transcriptional regulator ScsC_N PF18312.1 gi|218884646|ref|YP_002429028.1| - 0.26 11.1 1.0 0.49 10.3 0.2 1.9 2 0 0 2 2 2 0 Copper resistance protein ScsC N-terminal domain IZUMO PF15005.6 gi|218884648|ref|YP_002429030.1| - 0.25 11.9 0.5 0.82 10.2 0.4 1.8 2 0 0 2 2 2 0 Izumo sperm-egg fusion, Ig domain-associated Ribosomal_S13_N PF08069.12 gi|218884649|ref|YP_002429031.1| - 1.6e-24 85.7 0.1 3.7e-24 84.5 0.1 1.7 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|218884649|ref|YP_002429031.1| - 2.9e-17 62.6 0.5 4.3e-17 62.1 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Ham1p_like PF01725.16 gi|218884650|ref|YP_002429032.1| - 1.7e-40 138.9 0.0 2e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RIO1 PF01163.22 gi|218884651|ref|YP_002429033.1| - 5.9e-16 58.6 0.0 9.1e-16 58.0 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|218884651|ref|YP_002429033.1| - 5.8e-11 42.8 0.5 0.00012 22.1 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|218884651|ref|YP_002429033.1| - 3.4e-10 39.8 0.1 4.4e-10 39.4 0.1 1.1 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|218884651|ref|YP_002429033.1| - 3.7e-09 36.3 0.0 4.6e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 gi|218884651|ref|YP_002429033.1| - 1.8e-07 30.7 0.0 2.4e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Choline_kinase PF01633.20 gi|218884651|ref|YP_002429033.1| - 0.00049 19.8 0.1 0.18 11.3 0.1 2.2 1 1 1 2 2 2 2 Choline/ethanolamine kinase EcKinase PF02958.20 gi|218884651|ref|YP_002429033.1| - 0.1 11.9 0.1 0.15 11.4 0.1 1.4 1 1 0 1 1 1 0 Ecdysteroid kinase Peptidase_M22 PF00814.25 gi|218884652|ref|YP_002429034.1| - 3.3e-71 240.2 0.0 3.9e-71 239.9 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|218884652|ref|YP_002429034.1| - 0.12 12.0 0.0 0.66 9.6 0.0 2.0 1 1 0 1 1 1 0 Carbamoyltransferase N-terminus YycC PF14174.6 gi|218884652|ref|YP_002429034.1| - 0.15 11.9 0.0 0.46 10.3 0.0 1.8 2 0 0 2 2 2 0 YycC-like protein Ribosomal_S24e PF01282.19 gi|218884653|ref|YP_002429035.1| - 1.5e-21 76.1 0.0 2e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.12 gi|218884654|ref|YP_002429036.1| - 2.2e-13 50.0 0.0 4.1e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.13 gi|218884655|ref|YP_002429037.1| - 5.1e-14 52.1 0.1 6e-14 51.9 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger UPF0547 PF10571.9 gi|218884655|ref|YP_002429037.1| - 0.0013 18.7 2.7 0.002 18.1 2.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|218884655|ref|YP_002429037.1| - 0.0023 17.9 1.6 0.0031 17.5 1.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|218884655|ref|YP_002429037.1| - 0.0027 17.4 1.4 0.0038 16.9 1.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-C4H2 PF10146.9 gi|218884655|ref|YP_002429037.1| - 0.0032 17.8 0.9 0.0037 17.6 0.9 1.1 1 0 0 1 1 1 1 Zinc finger-containing protein zf-P11 PF03854.14 gi|218884655|ref|YP_002429037.1| - 0.0087 15.7 0.2 0.014 15.1 0.2 1.3 1 0 0 1 1 1 1 P-11 zinc finger zinc_ribbon_15 PF17032.5 gi|218884655|ref|YP_002429037.1| - 0.012 16.4 1.1 0.016 16.0 1.1 1.2 1 0 0 1 1 1 0 zinc-ribbon family TackOD1 PF18551.1 gi|218884655|ref|YP_002429037.1| - 0.013 15.2 0.5 0.015 15.0 0.5 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DUF35_N PF12172.8 gi|218884655|ref|YP_002429037.1| - 0.014 15.3 2.9 0.019 14.8 2.9 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|218884655|ref|YP_002429037.1| - 0.014 15.4 0.2 0.016 15.2 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|218884655|ref|YP_002429037.1| - 0.035 13.8 0.3 0.035 13.8 0.3 2.0 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 NRDD PF13597.6 gi|218884655|ref|YP_002429037.1| - 0.14 10.9 0.3 0.17 10.7 0.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF2072 PF09845.9 gi|218884655|ref|YP_002429037.1| - 0.21 11.9 1.5 0.77 10.0 0.8 1.9 1 1 1 2 2 2 0 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|218884655|ref|YP_002429037.1| - 0.6 10.3 4.7 7.1 6.8 4.7 2.1 1 1 0 1 1 1 0 Zinc ribbon domain SHS2_Rpb7-N PF03876.17 gi|218884656|ref|YP_002429038.1| - 5.6e-16 58.7 0.1 1.6e-15 57.2 0.0 1.8 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|218884656|ref|YP_002429038.1| - 7.4e-08 32.6 2.6 8.2e-08 32.5 0.2 2.2 2 1 1 3 3 3 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|218884656|ref|YP_002429038.1| - 0.012 15.9 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|218884657|ref|YP_002429039.1| - 7.6e-25 87.5 0.4 8.7e-25 87.3 0.4 1.0 1 0 0 1 1 1 1 PIN like domain DUF5615 PF18480.1 gi|218884657|ref|YP_002429039.1| - 0.00013 21.6 0.0 0.00022 20.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) Fcf1 PF04900.12 gi|218884657|ref|YP_002429039.1| - 0.00024 21.4 0.0 0.00031 21.1 0.0 1.3 1 0 0 1 1 1 1 Fcf1 PIN PF01850.21 gi|218884657|ref|YP_002429039.1| - 0.00067 20.2 0.3 0.0023 18.4 0.3 1.7 1 1 0 1 1 1 1 PIN domain RNase_Zc3h12a PF11977.8 gi|218884657|ref|YP_002429039.1| - 0.094 12.5 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain AAA_18 PF13238.6 gi|218884657|ref|YP_002429039.1| - 0.094 13.3 0.2 0.11 13.0 0.2 1.3 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|218884658|ref|YP_002429040.1| - 1.9e-31 109.1 0.1 1.4e-30 106.3 0.1 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|218884658|ref|YP_002429040.1| - 1.3e-27 95.9 2.1 1.5e-27 95.6 0.6 1.9 2 0 0 2 2 2 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|218884658|ref|YP_002429040.1| - 1.4e-06 28.5 1.4 4.4e-06 27.0 1.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 PduV-EutP PF10662.9 gi|218884658|ref|YP_002429040.1| - 3.2e-05 23.7 0.6 0.089 12.5 0.1 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|218884658|ref|YP_002429040.1| - 0.00035 20.6 0.0 0.00075 19.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|218884658|ref|YP_002429040.1| - 0.00037 20.4 0.5 0.0038 17.1 0.1 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|218884658|ref|YP_002429040.1| - 0.014 15.4 0.1 0.03 14.3 0.1 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|218884658|ref|YP_002429040.1| - 0.018 14.6 0.5 2.7 7.5 0.0 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B MeaB PF03308.16 gi|218884658|ref|YP_002429040.1| - 0.094 11.7 1.1 0.59 9.1 0.1 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ribosomal_S6e PF01092.19 gi|218884659|ref|YP_002429041.1| - 4.1e-33 114.0 0.0 8.8e-33 112.9 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein S6e EIF_2_alpha PF07541.12 gi|218884659|ref|YP_002429041.1| - 0.041 14.0 0.2 0.068 13.3 0.2 1.4 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 2 alpha subunit GTP_EFTU_D4 PF14578.6 gi|218884660|ref|YP_002429042.1| - 2e-37 127.0 2.5 4.8e-37 125.7 2.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|218884660|ref|YP_002429042.1| - 3.5e-34 118.0 0.0 7.1e-34 117.0 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|218884660|ref|YP_002429042.1| - 9.6e-21 73.9 0.1 2.2e-20 72.7 0.1 1.6 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|218884660|ref|YP_002429042.1| - 1.8e-10 41.1 0.2 1.8e-09 37.8 0.0 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|218884660|ref|YP_002429042.1| - 3.4e-07 30.4 0.0 1.1e-06 28.7 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|218884660|ref|YP_002429042.1| - 0.00043 20.2 0.0 0.0025 17.6 0.0 2.3 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|218884660|ref|YP_002429042.1| - 0.0015 18.8 0.0 0.019 15.2 0.0 2.7 3 1 0 3 3 3 1 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|218884660|ref|YP_002429042.1| - 0.0027 17.6 0.2 3.3 7.6 0.0 3.2 2 1 1 4 4 4 2 RsgA GTPase Arf PF00025.21 gi|218884660|ref|YP_002429042.1| - 0.0073 15.8 0.0 4.5 6.7 0.0 3.1 3 0 0 3 3 3 1 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|218884660|ref|YP_002429042.1| - 0.011 15.8 0.0 0.1 12.6 0.0 2.5 3 0 0 3 3 3 0 Dynamin family AAA_22 PF13401.6 gi|218884660|ref|YP_002429042.1| - 0.016 15.5 0.0 0.046 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain Ras PF00071.22 gi|218884660|ref|YP_002429042.1| - 0.05 13.2 0.0 0.33 10.5 0.0 2.3 1 1 0 1 1 1 0 Ras family Ribosomal_L24e PF01246.20 gi|218884661|ref|YP_002429043.1| - 1.4e-21 76.4 1.5 1.6e-21 76.3 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|218884661|ref|YP_002429043.1| - 8.3e-05 22.4 1.5 8.3e-05 22.4 1.5 1.4 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif SOBP PF15279.6 gi|218884661|ref|YP_002429043.1| - 0.0082 16.8 0.5 0.01 16.5 0.5 1.1 1 0 0 1 1 1 1 Sine oculis-binding protein YHS PF04945.13 gi|218884661|ref|YP_002429043.1| - 0.02 15.0 0.1 0.03 14.4 0.1 1.3 1 0 0 1 1 1 0 YHS domain DUF2116 PF09889.9 gi|218884661|ref|YP_002429043.1| - 0.085 12.8 1.2 0.79 9.7 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NosL PF05573.12 gi|218884661|ref|YP_002429043.1| - 0.091 13.1 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 NosL Ribosomal_S28e PF01200.18 gi|218884662|ref|YP_002429044.1| - 5.3e-30 103.2 4.0 6.9e-30 102.8 4.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|218884664|ref|YP_002429046.1| - 6.4e-32 109.2 0.6 7.9e-32 108.9 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|218884664|ref|YP_002429046.1| - 5.6e-05 22.9 0.1 0.0001 22.1 0.1 1.5 1 1 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|218884664|ref|YP_002429046.1| - 0.0054 16.8 0.0 0.0065 16.5 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 DUF1269 PF06897.12 gi|218884664|ref|YP_002429046.1| - 0.14 12.4 0.7 14 6.0 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1269) tRNA-synt_1c PF00749.21 gi|218884665|ref|YP_002429047.1| - 1.7e-74 250.5 0.0 2.6e-74 250.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|218884665|ref|YP_002429047.1| - 4.8e-20 72.1 0.0 1.1e-19 70.9 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF2118 PF09891.9 gi|218884666|ref|YP_002429048.1| - 3.3e-15 56.3 0.0 3.8e-15 56.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) FMN_dh PF01070.18 gi|218884667|ref|YP_002429049.1| - 2.5e-15 56.4 0.4 9.7e-14 51.1 0.4 2.6 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Memo PF01875.17 gi|218884668|ref|YP_002429050.1| - 6.4e-79 264.9 0.0 7.3e-79 264.7 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein MccV PF17508.2 gi|218884668|ref|YP_002429050.1| - 0.17 12.5 0.0 0.33 11.5 0.0 1.4 1 0 0 1 1 1 0 Microcin V bacteriocin Ribosomal_S2 PF00318.20 gi|218884669|ref|YP_002429051.1| - 1.3e-25 89.9 0.0 1e-15 57.6 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 RNA_pol_N PF01194.17 gi|218884670|ref|YP_002429052.1| - 1.7e-29 101.9 0.2 1.9e-29 101.7 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|218884670|ref|YP_002429052.1| - 0.015 15.6 0.1 0.022 15.0 0.1 1.3 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) FYRN PF05964.14 gi|218884670|ref|YP_002429052.1| - 0.021 14.7 1.4 0.031 14.1 1.4 1.3 1 0 0 1 1 1 0 F/Y-rich N-terminus Ribosomal_S9 PF00380.19 gi|218884671|ref|YP_002429053.1| - 6.9e-34 117.0 0.0 7.9e-34 116.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|218884672|ref|YP_002429054.1| - 8.9e-12 45.4 0.5 1.6e-09 38.1 0.5 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|218884673|ref|YP_002429055.1| - 1.1e-07 31.4 0.3 4.1e-07 29.6 0.3 1.7 1 1 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|218884673|ref|YP_002429055.1| - 2.9e-07 31.2 0.0 3.4e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Carla_C4 PF01623.17 gi|218884673|ref|YP_002429055.1| - 0.089 12.8 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Carlavirus putative nucleic acid binding protein RNA_pol_A_bac PF01000.26 gi|218884674|ref|YP_002429056.1| - 5.8e-30 103.9 0.0 1.1e-29 103.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|218884674|ref|YP_002429056.1| - 1.4e-13 50.1 0.0 1.8e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.27 gi|218884674|ref|YP_002429056.1| - 8.3e-07 28.6 13.0 0.00038 20.2 1.6 3.2 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|218884674|ref|YP_002429056.1| - 1.2e-06 29.0 11.4 0.00013 22.5 12.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|218884674|ref|YP_002429056.1| - 1.2e-06 28.3 13.3 0.00016 21.6 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|218884674|ref|YP_002429056.1| - 2.7e-06 27.4 11.2 5.5e-06 26.5 11.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|218884674|ref|YP_002429056.1| - 3e-06 27.3 10.7 6.5e-06 26.2 10.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|218884674|ref|YP_002429056.1| - 4.3e-06 27.6 5.8 0.022 15.7 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|218884674|ref|YP_002429056.1| - 7.4e-05 22.8 10.6 0.00014 21.9 10.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|218884674|ref|YP_002429056.1| - 0.00079 19.4 11.7 0.0023 17.9 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|218884674|ref|YP_002429056.1| - 0.0011 19.7 15.0 0.16 12.9 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|218884674|ref|YP_002429056.1| - 0.0035 17.7 12.0 0.28 11.8 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Linocin_M18 PF04454.12 gi|218884674|ref|YP_002429056.1| - 0.1 11.9 0.0 4.2 6.6 0.0 2.1 2 0 0 2 2 2 0 Encapsulating protein for peroxidase Fer4_17 PF13534.6 gi|218884674|ref|YP_002429056.1| - 0.18 12.4 12.6 1.1e+02 3.5 12.9 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|218884674|ref|YP_002429056.1| - 0.24 11.6 8.8 1.8 8.8 1.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|218884674|ref|YP_002429056.1| - 0.25 11.8 13.1 24 5.5 3.8 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Ribosomal_S11 PF00411.19 gi|218884675|ref|YP_002429057.1| - 4.6e-48 162.2 3.7 5.8e-48 161.9 3.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|218884676|ref|YP_002429058.1| - 5e-15 55.0 2.1 7.1e-15 54.4 0.4 2.0 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|218884676|ref|YP_002429058.1| - 0.0017 19.2 0.6 0.0027 18.6 0.5 1.6 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain TyrRSs_C PF16714.5 gi|218884676|ref|YP_002429058.1| - 0.0099 15.7 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 Tyrosyl-tRNA synthetase C-terminal domain Ribosomal_S13 PF00416.22 gi|218884677|ref|YP_002429059.1| - 5.9e-39 133.4 0.0 7.5e-39 133.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 Ribosomal_S10 PF00338.22 gi|218884678|ref|YP_002429060.1| - 5e-25 87.6 0.3 5.9e-25 87.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|218884678|ref|YP_002429060.1| - 0.009 16.8 0.1 0.021 15.7 0.0 1.5 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain RIG-I_C PF18119.1 gi|218884678|ref|YP_002429060.1| - 0.12 12.3 0.1 0.16 12.0 0.1 1.1 1 0 0 1 1 1 0 RIG-I receptor C-terminal domain GTP_EFTU PF00009.27 gi|218884679|ref|YP_002429061.1| - 2.6e-54 183.7 0.0 4.2e-54 183.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|218884679|ref|YP_002429061.1| - 3.1e-37 127.3 0.1 1.3e-36 125.3 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|218884679|ref|YP_002429061.1| - 1.3e-13 51.1 2.6 2.9e-13 50.0 2.6 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|218884679|ref|YP_002429061.1| - 5.7e-05 23.2 0.0 0.00045 20.3 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|218884679|ref|YP_002429061.1| - 0.00061 19.6 1.7 0.00061 19.6 1.7 2.4 3 0 0 3 3 3 1 Elongation factor Tu domain 4 Dynamin_N PF00350.23 gi|218884679|ref|YP_002429061.1| - 0.079 13.0 0.0 11 6.0 0.0 2.4 1 1 1 2 2 2 0 Dynamin family YajC PF02699.15 gi|218884679|ref|YP_002429061.1| - 0.095 12.6 0.3 0.23 11.4 0.3 1.6 1 0 0 1 1 1 0 Preprotein translocase subunit SRPRB PF09439.10 gi|218884679|ref|YP_002429061.1| - 0.1 12.0 0.1 0.37 10.2 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 gi|218884679|ref|YP_002429061.1| - 0.1 12.4 0.1 5.7 6.7 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Ribosomal_S7 PF00177.21 gi|218884680|ref|YP_002429062.1| - 1.2e-40 138.6 0.2 1.4e-40 138.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.25 gi|218884681|ref|YP_002429063.1| - 4e-45 152.1 0.2 5e-45 151.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|218884682|ref|YP_002429064.1| - 3.1e-14 52.6 1.9 3.2e-08 33.3 0.1 2.3 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|218884682|ref|YP_002429064.1| - 1.8e-13 50.3 0.9 1.4e-11 44.3 0.1 2.3 2 0 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.6 gi|218884682|ref|YP_002429064.1| - 8.3e-09 35.2 0.1 0.0032 17.3 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|218884682|ref|YP_002429064.1| - 0.00023 20.9 0.7 0.11 12.4 0.1 2.6 2 0 0 2 2 2 2 KH domain Ribosomal_L7Ae PF01248.26 gi|218884683|ref|YP_002429065.1| - 8.7e-18 63.8 0.0 1e-17 63.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PucR PF07905.11 gi|218884683|ref|YP_002429065.1| - 0.15 12.3 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family RNA_pol_Rpb1_5 PF04998.17 gi|218884684|ref|YP_002429066.1| - 2.6e-56 191.0 1.0 3.3e-56 190.7 1.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.18 gi|218884684|ref|YP_002429066.1| - 0.17 11.9 1.1 0.58 10.2 0.1 2.5 3 0 0 3 3 3 0 NAC domain KGG PF10685.9 gi|218884684|ref|YP_002429066.1| - 0.64 10.4 3.9 4.3 7.7 1.6 2.5 2 0 0 2 2 2 0 Stress-induced bacterial acidophilic repeat motif RNA_pol_Rpb1_1 PF04997.12 gi|218884685|ref|YP_002429067.1| - 1.1e-97 327.1 0.0 1.5e-97 326.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|218884685|ref|YP_002429067.1| - 4.4e-75 251.5 0.0 7.4e-75 250.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|218884685|ref|YP_002429067.1| - 1.2e-37 129.2 0.0 2.8e-37 128.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|218884685|ref|YP_002429067.1| - 6.5e-26 91.3 0.0 1.1e-25 90.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.17 gi|218884685|ref|YP_002429067.1| - 6.7e-26 90.4 0.0 1.4e-25 89.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 Zn-ribbon_8 PF09723.10 gi|218884685|ref|YP_002429067.1| - 0.11 12.7 1.8 5.8 7.1 0.1 3.1 3 0 0 3 3 3 0 Zinc ribbon domain DZR PF12773.7 gi|218884685|ref|YP_002429067.1| - 0.12 12.4 1.4 12 6.0 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|218884685|ref|YP_002429067.1| - 0.7 9.4 8.4 1.5 8.3 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|218884685|ref|YP_002429067.1| - 4.1 7.7 5.9 44 4.4 0.0 3.5 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-ISL3 PF14690.6 gi|218884685|ref|YP_002429067.1| - 5.7 7.7 8.1 4.5 8.0 0.2 3.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-FPG_IleRS PF06827.14 gi|218884685|ref|YP_002429067.1| - 7.1 6.6 6.9 15 5.5 0.3 3.2 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS RNA_pol_Rpb2_6 PF00562.28 gi|218884686|ref|YP_002429068.1| - 4e-131 437.7 0.0 5.3e-131 437.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|218884686|ref|YP_002429068.1| - 2.2e-46 157.9 0.3 3.2e-46 157.4 0.3 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 gi|218884686|ref|YP_002429068.1| - 2.7e-28 98.2 0.1 5.5e-28 97.2 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|218884686|ref|YP_002429068.1| - 1.7e-26 92.1 0.0 4.7e-26 90.7 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|218884686|ref|YP_002429068.1| - 9.6e-24 84.1 1.8 5.6e-23 81.6 0.6 2.6 2 1 0 2 2 2 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_4 PF04566.13 gi|218884686|ref|YP_002429068.1| - 2.2e-22 79.1 0.9 6.4e-22 77.6 0.9 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|218884686|ref|YP_002429068.1| - 1.7e-09 38.1 0.0 4.6e-09 36.7 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DUF2067 PF09840.9 gi|218884686|ref|YP_002429068.1| - 0.022 14.3 0.9 3.3 7.2 0.5 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) RNA_pol_Rpb5_C PF01191.19 gi|218884687|ref|YP_002429069.1| - 1.5e-33 114.5 0.0 1.7e-33 114.3 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Cdc6_C PF09079.11 gi|218884688|ref|YP_002429070.1| - 5.3e-17 61.6 1.9 3.8e-16 58.8 0.2 2.9 2 1 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|218884688|ref|YP_002429070.1| - 5.7e-11 42.8 0.0 1.9e-10 41.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|218884688|ref|YP_002429070.1| - 1.3e-09 38.6 0.0 3.5e-09 37.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|218884688|ref|YP_002429070.1| - 3.3e-09 37.4 0.0 3.7e-08 33.9 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain TniB PF05621.11 gi|218884688|ref|YP_002429070.1| - 4.3e-09 36.1 0.0 9.2e-09 35.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|218884688|ref|YP_002429070.1| - 1.1e-07 32.0 0.3 2.5e-07 30.9 0.3 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|218884688|ref|YP_002429070.1| - 6.5e-05 22.3 0.0 8.6e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|218884688|ref|YP_002429070.1| - 0.00015 21.0 0.0 0.00024 20.4 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF815 PF05673.13 gi|218884688|ref|YP_002429070.1| - 0.00021 20.5 0.0 0.00048 19.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|218884688|ref|YP_002429070.1| - 0.0011 18.5 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region NACHT PF05729.12 gi|218884688|ref|YP_002429070.1| - 0.0037 17.2 0.0 0.0065 16.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.26 gi|218884688|ref|YP_002429070.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_32 PF13654.6 gi|218884688|ref|YP_002429070.1| - 0.011 14.6 0.8 0.15 10.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|218884688|ref|YP_002429070.1| - 0.038 13.7 0.0 0.096 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|218884688|ref|YP_002429070.1| - 0.038 14.3 0.3 0.13 12.6 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|218884688|ref|YP_002429070.1| - 0.038 14.3 0.1 0.11 12.8 0.1 1.8 1 0 0 1 1 1 0 AAA C-terminal domain Bac_DnaA PF00308.18 gi|218884688|ref|YP_002429070.1| - 0.039 13.8 0.2 0.51 10.1 0.2 2.1 1 1 0 1 1 1 0 Bacterial dnaA protein FtsK_SpoIIIE PF01580.18 gi|218884688|ref|YP_002429070.1| - 0.043 13.2 0.0 0.078 12.3 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family PIF1 PF05970.14 gi|218884688|ref|YP_002429070.1| - 0.047 12.9 0.0 0.2 10.8 0.0 1.9 2 0 0 2 2 2 0 PIF1-like helicase DEAD PF00270.29 gi|218884688|ref|YP_002429070.1| - 0.048 13.4 1.0 6.5 6.5 0.2 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase TsaE PF02367.17 gi|218884688|ref|YP_002429070.1| - 0.052 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|218884688|ref|YP_002429070.1| - 0.057 13.4 0.1 0.14 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|218884688|ref|YP_002429070.1| - 0.16 12.3 0.0 0.34 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|218884688|ref|YP_002429070.1| - 0.28 11.2 1.8 1.5 8.8 0.6 2.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF99 PF01949.16 gi|218884689|ref|YP_002429071.1| - 9.7e-44 149.0 0.0 1.1e-43 148.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 PEPCK_GTP PF00821.18 gi|218884690|ref|YP_002429072.1| - 4.3e-102 341.6 0.0 5.9e-102 341.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|218884690|ref|YP_002429072.1| - 1.6e-62 211.0 0.0 2.1e-62 210.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain Aminotran_3 PF00202.21 gi|218884691|ref|YP_002429073.1| - 1.3e-104 350.1 0.0 1.5e-104 349.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|218884691|ref|YP_002429073.1| - 0.048 12.8 0.0 0.11 11.6 0.0 1.7 1 1 0 1 1 1 0 Aminotransferase class I and II PyrI PF01948.18 gi|218884691|ref|YP_002429073.1| - 0.062 13.6 0.0 0.16 12.2 0.0 1.7 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, allosteric domain Tic110 PF16940.5 gi|218884691|ref|YP_002429073.1| - 0.11 11.0 0.1 0.17 10.4 0.1 1.2 1 0 0 1 1 1 0 Chloroplast envelope transporter Na_Ala_symp PF01235.17 gi|218884693|ref|YP_002429075.1| - 1.4e-107 360.4 24.9 1.9e-107 360.0 24.9 1.1 1 0 0 1 1 1 1 Sodium:alanine symporter family Keratin_assoc PF09775.9 gi|218884693|ref|YP_002429075.1| - 0.083 12.5 0.5 0.25 11.0 0.5 1.8 1 0 0 1 1 1 0 Keratinocyte-associated protein 2 Radical_SAM PF04055.21 gi|218884694|ref|YP_002429076.1| - 3.1e-25 89.5 0.0 3.1e-25 89.5 0.0 2.2 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|218884694|ref|YP_002429076.1| - 1.4e-09 38.1 1.1 2.6e-09 37.2 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|218884694|ref|YP_002429076.1| - 2e-08 34.6 0.0 5.2e-08 33.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain ROS_MUCR PF05443.11 gi|218884694|ref|YP_002429076.1| - 0.043 13.9 0.0 0.085 12.9 0.0 1.4 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein zf-CHC2 PF01807.20 gi|218884694|ref|YP_002429076.1| - 0.12 12.2 0.7 2.1 8.2 0.4 2.5 2 0 0 2 2 2 0 CHC2 zinc finger AAA_18 PF13238.6 gi|218884695|ref|YP_002429077.1| - 1.1e-23 84.2 0.0 1.4e-23 83.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|218884695|ref|YP_002429077.1| - 0.00031 21.2 0.0 0.002 18.6 0.0 2.1 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|218884695|ref|YP_002429077.1| - 0.0021 18.2 0.3 0.0076 16.4 0.1 2.0 1 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|218884695|ref|YP_002429077.1| - 0.0027 18.0 0.1 0.0044 17.3 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|218884695|ref|YP_002429077.1| - 0.0034 17.8 0.1 0.015 15.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain CPT PF07931.12 gi|218884695|ref|YP_002429077.1| - 0.0049 16.7 0.0 1.7 8.4 0.0 2.2 2 0 0 2 2 2 2 Chloramphenicol phosphotransferase-like protein AAA_5 PF07728.14 gi|218884695|ref|YP_002429077.1| - 0.0069 16.4 0.0 0.0099 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|218884695|ref|YP_002429077.1| - 0.014 15.8 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Viral_helicase1 PF01443.18 gi|218884695|ref|YP_002429077.1| - 0.015 15.1 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ATPase PF06745.13 gi|218884695|ref|YP_002429077.1| - 0.017 14.4 0.1 0.47 9.8 0.1 2.1 2 0 0 2 2 2 0 KaiC AAA_22 PF13401.6 gi|218884695|ref|YP_002429077.1| - 0.032 14.5 0.0 0.057 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|218884695|ref|YP_002429077.1| - 0.036 13.8 0.0 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|218884695|ref|YP_002429077.1| - 0.048 12.9 0.0 0.056 12.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CoaE PF01121.20 gi|218884695|ref|YP_002429077.1| - 0.16 11.6 0.1 19 4.9 0.0 2.6 1 1 2 3 3 3 0 Dephospho-CoA kinase Cytidylate_kin PF02224.18 gi|218884695|ref|YP_002429077.1| - 0.17 11.6 0.1 0.35 10.6 0.0 1.7 2 0 0 2 2 2 0 Cytidylate kinase KTI12 PF08433.10 gi|218884695|ref|YP_002429077.1| - 0.17 11.3 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 IPT PF01745.16 gi|218884695|ref|YP_002429077.1| - 0.17 11.2 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase Zeta_toxin PF06414.12 gi|218884695|ref|YP_002429077.1| - 0.19 11.0 0.3 0.38 10.0 0.1 1.5 2 0 0 2 2 2 0 Zeta toxin MMR_HSR1 PF01926.23 gi|218884696|ref|YP_002429078.1| - 4.9e-15 55.6 0.0 8.2e-11 42.0 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|218884696|ref|YP_002429078.1| - 5.5e-13 49.2 0.0 9e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|218884696|ref|YP_002429078.1| - 1.6e-07 31.0 0.0 0.00022 20.8 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|218884696|ref|YP_002429078.1| - 3e-06 27.4 0.2 0.056 13.5 0.0 3.1 2 1 1 3 3 3 3 Dynamin family GTP_EFTU PF00009.27 gi|218884696|ref|YP_002429078.1| - 0.00041 19.9 0.1 0.0016 18.0 0.0 1.8 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|218884696|ref|YP_002429078.1| - 0.0092 16.4 0.1 0.021 15.2 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain PduV-EutP PF10662.9 gi|218884696|ref|YP_002429078.1| - 0.15 11.8 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ThiS PF02597.20 gi|218884697|ref|YP_002429079.1| - 0.027 15.1 0.1 0.031 14.9 0.1 1.1 1 0 0 1 1 1 0 ThiS family ThiS-like PF14453.6 gi|218884697|ref|YP_002429079.1| - 0.055 13.5 0.0 0.06 13.4 0.0 1.1 1 0 0 1 1 1 0 ThiS-like ubiquitin MarR_2 PF12802.7 gi|218884697|ref|YP_002429079.1| - 0.067 13.1 0.0 0.098 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family ThiF PF00899.21 gi|218884698|ref|YP_002429080.1| - 5.6e-52 176.5 0.0 7.5e-52 176.1 0.0 1.1 1 0 0 1 1 1 1 ThiF family PglD_N PF17836.1 gi|218884698|ref|YP_002429080.1| - 0.032 14.9 0.1 0.073 13.7 0.1 1.7 1 0 0 1 1 1 0 PglD N-terminal domain Sacchrp_dh_NADP PF03435.18 gi|218884698|ref|YP_002429080.1| - 0.049 13.9 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ThiS PF02597.20 gi|218884699|ref|YP_002429081.1| - 5.3e-07 30.2 0.0 7e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.21 gi|218884699|ref|YP_002429081.1| - 0.00052 19.8 1.4 0.26 11.1 0.1 2.5 3 0 0 3 3 3 2 TrkA-C domain Ub-RnfH PF03658.14 gi|218884699|ref|YP_002429081.1| - 0.086 13.2 0.0 0.72 10.3 0.0 2.0 1 1 0 1 1 1 0 RnfH family Ubiquitin FHA PF00498.26 gi|218884699|ref|YP_002429081.1| - 0.091 13.1 0.0 0.2 12.1 0.0 1.6 2 0 0 2 2 2 0 FHA domain DUF2148 PF09918.9 gi|218884701|ref|YP_002429083.1| - 6.4e-30 103.0 0.5 6.4e-30 103.0 0.5 1.6 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) DALR_1 PF05746.15 gi|218884701|ref|YP_002429083.1| - 0.00025 21.2 0.1 0.00037 20.7 0.1 1.3 1 0 0 1 1 1 1 DALR anticodon binding domain AKNA PF12443.8 gi|218884701|ref|YP_002429083.1| - 0.21 12.3 0.0 0.31 11.7 0.0 1.2 1 0 0 1 1 1 0 AT-hook-containing transcription factor BPD_transp_2 PF02653.16 gi|218884703|ref|YP_002429085.1| - 6.2e-36 123.9 34.5 7.9e-36 123.6 34.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|218884704|ref|YP_002429086.1| - 3.6e-33 114.9 34.6 3.6e-33 114.9 34.6 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF3169 PF11368.8 gi|218884704|ref|YP_002429086.1| - 0.082 12.4 0.3 0.082 12.4 0.3 3.2 3 1 1 4 4 4 0 Protein of unknown function (DUF3169) ABC_tran PF00005.27 gi|218884705|ref|YP_002429087.1| - 1.3e-52 178.0 0.0 1.2e-30 106.8 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|218884705|ref|YP_002429087.1| - 9e-09 35.6 0.6 0.0042 16.9 0.2 2.8 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|218884705|ref|YP_002429087.1| - 0.0017 18.9 0.1 0.0043 17.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|218884705|ref|YP_002429087.1| - 0.011 15.1 0.2 0.97 8.7 0.0 2.9 3 0 0 3 3 3 0 Zeta toxin AAA_16 PF13191.6 gi|218884705|ref|YP_002429087.1| - 0.011 16.1 0.1 0.11 12.8 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|218884705|ref|YP_002429087.1| - 0.015 15.7 1.5 1.2 9.5 1.4 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|218884705|ref|YP_002429087.1| - 0.045 13.5 0.1 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|218884705|ref|YP_002429087.1| - 0.11 12.2 0.0 0.41 10.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|218884705|ref|YP_002429087.1| - 0.17 11.4 0.1 0.35 10.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|218884705|ref|YP_002429087.1| - 0.17 12.1 1.4 4.8 7.5 1.4 2.6 1 1 0 1 1 1 0 AAA domain Bmp PF02608.14 gi|218884706|ref|YP_002429088.1| - 4.4e-42 144.1 0.0 6e-42 143.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like ADH_N PF08240.12 gi|218884707|ref|YP_002429089.1| - 1.4e-31 108.5 1.5 2.5e-31 107.8 1.5 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|218884707|ref|YP_002429089.1| - 3.4e-16 59.4 0.0 5.9e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|218884707|ref|YP_002429089.1| - 2.8e-13 49.8 0.0 7.7e-13 48.4 0.0 1.7 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|218884707|ref|YP_002429089.1| - 4.1e-05 24.6 0.1 0.0001 23.4 0.1 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.22 gi|218884707|ref|YP_002429089.1| - 0.0077 17.1 0.0 0.021 15.6 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold LacAB_rpiB PF02502.18 gi|218884708|ref|YP_002429090.1| - 2.7e-37 127.9 0.0 2.9e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Ribose/Galactose Isomerase Gly_rich_SFCGS PF14272.6 gi|218884708|ref|YP_002429090.1| - 0.021 14.8 0.0 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 Glycine-rich SFCGS BD_b_sandwich PF18820.1 gi|218884708|ref|YP_002429090.1| - 0.051 13.6 0.1 0.071 13.1 0.1 1.3 1 0 0 1 1 1 0 Bdellovibrio Beta-sandwich SIS PF01380.22 gi|218884709|ref|YP_002429091.1| - 1.7e-44 150.8 0.1 4.8e-28 97.6 0.3 2.7 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.6 gi|218884709|ref|YP_002429091.1| - 1.5e-21 77.0 0.0 2.8e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|218884709|ref|YP_002429091.1| - 7.9e-15 54.9 0.0 2.3e-14 53.4 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|218884709|ref|YP_002429091.1| - 0.00025 21.1 0.1 0.0028 17.7 0.1 2.3 2 0 0 2 2 2 1 SIS domain bact-PGI_C PF10432.9 gi|218884709|ref|YP_002429091.1| - 0.02 15.0 0.0 0.11 12.6 0.0 2.2 1 1 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal SIS domain GATase_4 PF13230.6 gi|218884709|ref|YP_002429091.1| - 0.14 11.0 0.0 0.25 10.2 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II ACP PF06857.11 gi|218884709|ref|YP_002429091.1| - 0.16 12.2 0.0 0.33 11.2 0.0 1.5 1 0 0 1 1 1 0 Malonate decarboxylase delta subunit (MdcD) AA_kinase PF00696.28 gi|218884710|ref|YP_002429092.1| - 4.5e-20 72.3 0.0 7.9e-20 71.5 0.0 1.4 1 1 0 1 1 1 1 Amino acid kinase family ATPase_2 PF01637.18 gi|218884711|ref|YP_002429093.1| - 4.4e-19 69.3 0.8 7.5e-19 68.6 0.8 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|218884711|ref|YP_002429093.1| - 3.1e-08 33.7 0.1 2.3e-05 24.4 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|218884711|ref|YP_002429093.1| - 2e-05 25.0 0.0 8.6e-05 23.0 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|218884711|ref|YP_002429093.1| - 0.0049 17.1 0.0 0.02 15.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|218884711|ref|YP_002429093.1| - 0.02 15.3 0.0 0.055 13.9 0.0 1.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_35 PF14516.6 gi|218884711|ref|YP_002429093.1| - 0.067 12.0 0.0 0.56 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain Rio2_N PF09202.11 gi|218884711|ref|YP_002429093.1| - 0.11 12.7 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 Rio2, N-terminal adh_short_C2 PF13561.6 gi|218884712|ref|YP_002429094.1| - 1.3e-41 142.7 0.0 2.1e-41 142.0 0.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|218884712|ref|YP_002429094.1| - 6.6e-34 117.1 0.0 8.8e-34 116.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|218884712|ref|YP_002429094.1| - 1.2e-07 31.8 0.0 2.4e-07 30.9 0.0 1.4 2 0 0 2 2 2 1 KR domain DUF1776 PF08643.10 gi|218884712|ref|YP_002429094.1| - 0.036 13.4 0.0 0.047 13.1 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Glyco_transf_5 PF08323.11 gi|218884712|ref|YP_002429094.1| - 0.18 11.5 0.0 0.58 9.8 0.0 1.7 2 0 0 2 2 2 0 Starch synthase catalytic domain adh_short PF00106.25 gi|218884713|ref|YP_002429095.1| - 0.00038 20.0 0.0 0.00038 20.0 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|218884713|ref|YP_002429095.1| - 0.018 14.6 0.0 0.018 14.6 0.0 1.0 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase SpoU_methylase PF00588.19 gi|218884714|ref|YP_002429096.1| - 2.7e-32 111.9 0.0 3.8e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|218884714|ref|YP_002429096.1| - 5.1e-08 33.0 0.0 2.3e-06 27.6 0.0 2.2 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Methyltrn_RNA_3 PF02598.17 gi|218884714|ref|YP_002429096.1| - 0.12 11.8 0.1 0.6 9.6 0.1 1.9 1 1 1 2 2 2 0 Putative RNA methyltransferase MTS PF05175.14 gi|218884715|ref|YP_002429097.1| - 8.9e-16 57.9 0.0 3.9e-15 55.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|218884715|ref|YP_002429097.1| - 3.9e-11 42.9 0.2 6.2e-11 42.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|218884715|ref|YP_002429097.1| - 3.6e-08 33.2 0.0 5.4e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|218884715|ref|YP_002429097.1| - 9.6e-07 29.4 0.0 2.7e-06 28.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|218884715|ref|YP_002429097.1| - 1.3e-06 28.2 0.0 1.9e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|218884715|ref|YP_002429097.1| - 3.9e-06 27.4 0.1 5.1e-05 23.8 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|218884715|ref|YP_002429097.1| - 5.8e-06 26.3 0.1 1.2e-05 25.3 0.1 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|218884715|ref|YP_002429097.1| - 0.00019 22.1 0.3 0.00053 20.7 0.3 1.8 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|218884715|ref|YP_002429097.1| - 0.00076 18.8 0.0 0.0013 18.1 0.0 1.3 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_23 PF13489.6 gi|218884715|ref|YP_002429097.1| - 0.0021 17.9 0.0 0.016 15.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|218884715|ref|YP_002429097.1| - 0.003 16.9 0.0 0.0088 15.4 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_16 PF10294.9 gi|218884715|ref|YP_002429097.1| - 0.014 15.1 0.2 0.021 14.6 0.2 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_24 PF13578.6 gi|218884715|ref|YP_002429097.1| - 0.035 15.1 0.0 0.13 13.3 0.0 1.9 2 1 0 2 2 2 0 Methyltransferase domain UPF0020 PF01170.18 gi|218884715|ref|YP_002429097.1| - 0.14 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 RrnaAD PF00398.20 gi|218884716|ref|YP_002429098.1| - 3.4e-34 118.1 0.0 3.7e-34 118.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|218884716|ref|YP_002429098.1| - 0.00013 22.6 0.0 0.00031 21.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|218884716|ref|YP_002429098.1| - 0.0059 16.2 0.0 0.0099 15.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|218884716|ref|YP_002429098.1| - 0.0064 17.1 0.0 0.015 16.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|218884716|ref|YP_002429098.1| - 0.015 14.8 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase NodS PF05401.11 gi|218884716|ref|YP_002429098.1| - 0.018 14.7 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PCMT PF01135.19 gi|218884716|ref|YP_002429098.1| - 0.063 13.0 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 gi|218884716|ref|YP_002429098.1| - 0.1 11.6 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF655 PF04919.12 gi|218884717|ref|YP_002429099.1| - 4.4e-62 209.2 1.4 5.3e-62 209.0 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|218884717|ref|YP_002429099.1| - 0.00023 21.3 0.2 0.00039 20.6 0.2 1.4 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|218884717|ref|YP_002429099.1| - 0.0014 18.8 0.1 0.0035 17.6 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|218884718|ref|YP_002429100.1| - 9.7e-14 51.8 1.6 2.6e-13 50.4 1.6 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb4 Rap1_C PF11626.8 gi|218884718|ref|YP_002429100.1| - 0.021 14.9 0.0 0.36 10.9 0.0 2.1 2 0 0 2 2 2 0 TRF2-interacting telomeric protein/Rap1 - C terminal domain DUF4111 PF13427.6 gi|218884718|ref|YP_002429100.1| - 0.05 13.8 0.0 0.068 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4111) HTH_37 PF13744.6 gi|218884718|ref|YP_002429100.1| - 0.073 13.0 0.0 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain TFIIE_beta PF02186.15 gi|218884718|ref|YP_002429100.1| - 0.1 12.9 0.5 0.28 11.5 0.1 1.9 2 0 0 2 2 2 0 TFIIE beta subunit core domain Ribosomal_L21e PF01157.18 gi|218884719|ref|YP_002429101.1| - 1.6e-36 124.2 1.6 1.8e-36 124.0 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|218884720|ref|YP_002429102.1| - 5.9e-07 29.7 0.3 5.9e-07 29.7 0.3 2.4 2 1 1 3 3 3 1 THUMP domain SRP54 PF00448.22 gi|218884721|ref|YP_002429103.1| - 3e-76 255.4 0.1 4.1e-76 255.0 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|218884721|ref|YP_002429103.1| - 3.9e-26 91.6 0.0 1.1e-25 90.1 0.0 1.8 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|218884721|ref|YP_002429103.1| - 3e-13 49.8 2.6 6.2e-13 48.8 0.0 2.8 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|218884721|ref|YP_002429103.1| - 2.6e-06 27.5 0.2 1.7e-05 24.9 0.0 2.3 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.6 gi|218884721|ref|YP_002429103.1| - 2.3e-05 24.6 0.0 4.9e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|218884721|ref|YP_002429103.1| - 3e-05 23.7 2.5 0.0018 17.9 2.5 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|218884721|ref|YP_002429103.1| - 7.3e-05 22.8 0.1 0.0002 21.4 0.1 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|218884721|ref|YP_002429103.1| - 0.00016 22.0 0.0 0.001 19.3 0.0 2.3 3 0 0 3 3 2 1 AAA domain AAA_30 PF13604.6 gi|218884721|ref|YP_002429103.1| - 0.00027 20.7 0.0 0.00067 19.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|218884721|ref|YP_002429103.1| - 0.00028 20.2 0.0 0.00062 19.1 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.6 gi|218884721|ref|YP_002429103.1| - 0.00093 19.6 0.4 0.00093 19.6 0.4 2.2 2 1 0 2 2 1 1 AAA domain ParA PF10609.9 gi|218884721|ref|YP_002429103.1| - 0.0035 16.8 0.0 0.0053 16.2 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|218884721|ref|YP_002429103.1| - 0.006 16.5 0.1 0.022 14.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|218884721|ref|YP_002429103.1| - 0.0082 16.0 0.0 0.024 14.5 0.0 1.8 1 0 0 1 1 1 1 Adenylylsulphate kinase MobB PF03205.14 gi|218884721|ref|YP_002429103.1| - 0.011 15.7 0.1 0.023 14.6 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|218884721|ref|YP_002429103.1| - 0.015 14.3 0.0 0.028 13.4 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PFOR_II PF17147.4 gi|218884721|ref|YP_002429103.1| - 0.015 15.6 0.0 0.32 11.3 0.0 2.5 2 0 0 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II GTP_EFTU PF00009.27 gi|218884721|ref|YP_002429103.1| - 0.022 14.3 0.7 0.095 12.2 0.7 1.9 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain 6PF2K PF01591.18 gi|218884721|ref|YP_002429103.1| - 0.03 13.7 0.0 0.055 12.8 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_18 PF13238.6 gi|218884721|ref|YP_002429103.1| - 0.038 14.5 0.2 0.11 13.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain MipZ PF09140.11 gi|218884721|ref|YP_002429103.1| - 0.049 12.9 0.1 2.2 7.5 0.1 2.4 1 1 0 1 1 1 0 ATPase MipZ AAA_24 PF13479.6 gi|218884721|ref|YP_002429103.1| - 0.05 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|218884721|ref|YP_002429103.1| - 0.055 13.0 0.4 0.25 10.9 0.5 2.1 2 1 0 2 2 2 0 AAA domain Clp_N PF02861.20 gi|218884721|ref|YP_002429103.1| - 0.08 13.1 0.4 13 6.0 0.0 2.7 2 0 0 2 2 2 0 Clp amino terminal domain, pathogenicity island component PduV-EutP PF10662.9 gi|218884721|ref|YP_002429103.1| - 0.09 12.5 0.3 8 6.2 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 gi|218884721|ref|YP_002429103.1| - 0.093 12.5 0.1 0.36 10.6 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|218884721|ref|YP_002429103.1| - 0.1 13.1 0.6 0.82 10.1 0.6 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|218884721|ref|YP_002429103.1| - 0.1 13.0 0.0 0.36 11.2 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|218884721|ref|YP_002429103.1| - 0.11 13.0 0.0 0.27 11.7 0.0 1.7 1 0 0 1 1 1 0 ABC transporter ResIII PF04851.15 gi|218884721|ref|YP_002429103.1| - 0.12 12.3 1.4 0.62 10.0 1.4 2.1 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.15 gi|218884721|ref|YP_002429103.1| - 0.13 12.1 1.2 1.3 8.9 0.0 2.4 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|218884721|ref|YP_002429103.1| - 0.14 12.1 0.1 0.68 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|218884721|ref|YP_002429103.1| - 0.15 12.3 0.1 0.59 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain RHH_3 PF12651.7 gi|218884721|ref|YP_002429103.1| - 0.15 12.0 2.3 21 5.1 0.0 3.4 3 0 0 3 3 3 0 Ribbon-helix-helix domain Ribosomal_L16 PF00252.18 gi|218884722|ref|YP_002429104.1| - 1e-35 122.6 0.1 1.2e-35 122.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Diphthamide_syn PF01866.17 gi|218884723|ref|YP_002429105.1| - 3.9e-57 194.0 0.0 4.8e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein EHD_N PF16880.5 gi|218884723|ref|YP_002429105.1| - 0.98 9.4 3.7 3.3 7.7 0.1 3.1 3 0 0 3 3 3 0 N-terminal EH-domain containing protein PrmA PF06325.13 gi|218884724|ref|YP_002429106.1| - 0.00018 21.0 1.0 0.00028 20.4 0.6 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|218884724|ref|YP_002429106.1| - 0.00021 21.9 0.0 0.002 18.8 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|218884724|ref|YP_002429106.1| - 0.00079 19.0 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|218884724|ref|YP_002429106.1| - 0.013 15.2 0.0 0.033 13.9 0.0 1.8 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|218884724|ref|YP_002429106.1| - 0.081 13.6 0.1 0.18 12.5 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain DUF43 PF01861.16 gi|218884724|ref|YP_002429106.1| - 0.084 12.1 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Methyltransf_31 PF13847.6 gi|218884724|ref|YP_002429106.1| - 0.1 12.4 0.8 0.19 11.5 0.6 1.7 1 1 1 2 2 2 0 Methyltransferase domain ECR1_N PF14382.6 gi|218884725|ref|YP_002429107.1| - 8.8e-05 22.2 0.0 0.00028 20.6 0.0 1.9 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region RNA_POL_M_15KD PF02150.16 gi|218884725|ref|YP_002429107.1| - 0.00031 20.6 2.4 0.00052 19.8 2.4 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Prok-RING_1 PF14446.6 gi|218884725|ref|YP_002429107.1| - 0.0062 16.4 0.5 0.0094 15.9 0.5 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DUF2318 PF10080.9 gi|218884725|ref|YP_002429107.1| - 0.019 15.1 0.2 0.033 14.3 0.2 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) A2L_zn_ribbon PF08792.10 gi|218884725|ref|YP_002429107.1| - 0.027 14.2 3.2 0.05 13.3 3.2 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|218884725|ref|YP_002429107.1| - 0.041 13.8 1.0 0.074 13.0 1.0 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain GerPE PF10970.8 gi|218884725|ref|YP_002429107.1| - 0.062 13.5 0.1 0.091 12.9 0.1 1.3 1 0 0 1 1 1 0 Spore germination protein GerPE DZR PF12773.7 gi|218884725|ref|YP_002429107.1| - 0.11 12.6 0.4 0.17 11.9 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|218884725|ref|YP_002429107.1| - 0.12 12.6 0.6 0.18 12.0 0.6 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) EXOSC1 PF10447.9 gi|218884725|ref|YP_002429107.1| - 0.14 12.8 0.4 12 6.5 0.0 2.8 1 1 2 3 3 3 0 Exosome component EXOSC1/CSL4 HypA PF01155.19 gi|218884725|ref|YP_002429107.1| - 0.22 11.6 0.9 0.33 11.0 0.9 1.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|218884725|ref|YP_002429107.1| - 0.26 10.7 2.9 6.4 6.3 3.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF2067 PF09840.9 gi|218884726|ref|YP_002429108.1| - 1.7e-53 180.9 0.3 2.1e-53 180.6 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) BpuJI_N PF11564.8 gi|218884726|ref|YP_002429108.1| - 0.0093 15.2 0.1 0.012 14.9 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease BpuJI - N terminal RNA_pol_L_2 PF13656.6 gi|218884727|ref|YP_002429109.1| - 2.1e-19 69.0 0.0 2.5e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|218884727|ref|YP_002429109.1| - 0.043 13.2 0.0 0.063 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.18 gi|218884729|ref|YP_002429111.1| - 4.9e-20 71.1 4.7 6e-20 70.8 4.7 1.1 1 0 0 1 1 1 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|218884729|ref|YP_002429111.1| - 0.0003 20.7 1.5 0.00044 20.2 1.5 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|218884729|ref|YP_002429111.1| - 0.00047 20.0 2.6 0.28 11.1 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|218884729|ref|YP_002429111.1| - 0.0051 16.7 2.3 0.03 14.2 2.3 1.9 1 1 1 2 2 2 2 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|218884729|ref|YP_002429111.1| - 0.0085 15.8 3.6 1.2 9.0 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|218884729|ref|YP_002429111.1| - 0.015 15.4 2.6 1.6 8.9 0.1 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Baculo_LEF5_C PF11792.8 gi|218884729|ref|YP_002429111.1| - 0.016 14.8 0.7 0.081 12.6 0.0 2.0 1 1 1 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_10 PF10058.9 gi|218884729|ref|YP_002429111.1| - 0.024 14.4 1.1 0.037 13.8 1.1 1.4 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ribbon_3 PF13248.6 gi|218884729|ref|YP_002429111.1| - 0.026 13.9 5.7 0.069 12.6 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|218884729|ref|YP_002429111.1| - 0.046 13.4 0.6 6.5 6.5 0.0 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit FdhE PF04216.12 gi|218884729|ref|YP_002429111.1| - 0.054 13.4 0.8 0.062 13.2 0.8 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-H2C2_2 PF13465.6 gi|218884729|ref|YP_002429111.1| - 0.074 13.5 5.5 1.9 9.1 0.5 2.4 2 1 0 2 2 2 0 Zinc-finger double domain RNA_POL_M_15KD PF02150.16 gi|218884729|ref|YP_002429111.1| - 0.11 12.4 0.8 4 7.4 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-tcix PF14952.6 gi|218884729|ref|YP_002429111.1| - 0.2 11.3 2.2 10 5.8 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-Mss51 PF13824.6 gi|218884729|ref|YP_002429111.1| - 0.21 11.7 4.1 3.2 7.9 0.4 2.1 1 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ACC PF17848.1 gi|218884729|ref|YP_002429111.1| - 0.29 11.2 4.4 5.3 7.2 0.3 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf_C2H2_10 PF18414.1 gi|218884729|ref|YP_002429111.1| - 0.35 10.4 3.7 3.6 7.2 0.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger TF_Zn_Ribbon PF08271.12 gi|218884729|ref|YP_002429111.1| - 0.45 10.1 4.7 5.5 6.6 4.1 2.5 2 1 1 3 3 3 0 TFIIB zinc-binding zn-ribbon_14 PF16503.5 gi|218884729|ref|YP_002429111.1| - 1.4 8.5 4.6 2 8.0 1.1 2.1 2 0 0 2 2 2 0 Zinc-ribbon Zn-ribbon_8 PF09723.10 gi|218884729|ref|YP_002429111.1| - 1.9 8.7 7.1 6.9 6.9 0.6 2.4 1 1 0 2 2 2 0 Zinc ribbon domain PCNA_N PF00705.18 gi|218884730|ref|YP_002429112.1| - 6.7e-16 58.2 0.0 2.8e-15 56.1 0.0 1.9 2 1 1 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|218884730|ref|YP_002429112.1| - 4.1e-07 30.2 0.0 8.2e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|218884730|ref|YP_002429112.1| - 9.9e-05 21.5 0.1 0.00037 19.7 0.1 1.8 1 1 1 2 2 2 1 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|218884730|ref|YP_002429112.1| - 0.018 14.5 0.0 0.03 13.8 0.0 1.4 1 1 0 1 1 1 0 Rad9 DNA_primase_S PF01896.19 gi|218884731|ref|YP_002429113.1| - 7.2e-15 55.5 1.2 3.3e-13 50.1 0.1 2.2 2 0 0 2 2 2 2 DNA primase small subunit DUF515 PF04415.12 gi|218884733|ref|YP_002429115.1| - 0.18 10.2 2.5 0.097 11.0 0.6 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF515) DUF3290 PF11694.8 gi|218884733|ref|YP_002429115.1| - 0.89 9.5 11.5 0.35 10.8 8.4 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3290) Baculo_11_kDa PF06143.11 gi|218884733|ref|YP_002429115.1| - 1.3 8.6 4.2 1 9.0 0.6 2.2 2 1 0 2 2 2 0 Baculovirus 11 kDa family Nop10p PF04135.12 gi|218884734|ref|YP_002429116.1| - 6e-23 80.6 0.5 7.4e-23 80.3 0.5 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.8 gi|218884734|ref|YP_002429116.1| - 0.0004 20.2 1.8 0.0004 20.2 1.8 1.6 2 0 0 2 2 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L32p PF01783.23 gi|218884734|ref|YP_002429116.1| - 0.004 17.4 0.9 0.0069 16.6 0.9 1.4 1 0 0 1 1 1 1 Ribosomal L32p protein family DUF1272 PF06906.11 gi|218884734|ref|YP_002429116.1| - 0.0043 17.1 1.6 0.0058 16.7 1.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) DUF1258 PF06869.12 gi|218884734|ref|YP_002429116.1| - 0.006 16.1 0.0 0.006 16.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1258) Zn_ribbon_SprT PF17283.2 gi|218884734|ref|YP_002429116.1| - 0.01 15.7 3.7 0.016 15.1 3.7 1.3 1 0 0 1 1 1 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|218884734|ref|YP_002429116.1| - 0.025 14.6 0.3 0.034 14.2 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon RecR PF02132.15 gi|218884734|ref|YP_002429116.1| - 0.029 14.0 0.6 0.051 13.2 0.6 1.4 1 0 0 1 1 1 0 RecR protein A2L_zn_ribbon PF08792.10 gi|218884734|ref|YP_002429116.1| - 0.057 13.2 1.9 5.9 6.7 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|218884734|ref|YP_002429116.1| - 0.069 12.6 6.6 0.69 9.4 6.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|218884734|ref|YP_002429116.1| - 0.11 12.5 0.4 0.15 12.1 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRDD PF13597.6 gi|218884734|ref|YP_002429116.1| - 0.31 9.8 0.2 0.34 9.6 0.2 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase TF_Zn_Ribbon PF08271.12 gi|218884734|ref|YP_002429116.1| - 0.49 10.0 4.8 3.1 7.4 0.3 2.4 2 1 1 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|218884734|ref|YP_002429116.1| - 0.79 9.5 9.1 42 4.0 9.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|218884734|ref|YP_002429116.1| - 2 8.4 8.8 2.8 7.9 1.8 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-tcix PF14952.6 gi|218884734|ref|YP_002429116.1| - 2.4 7.8 9.2 19 4.9 7.7 2.1 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding EIF_2_alpha PF07541.12 gi|218884735|ref|YP_002429117.1| - 1.4e-22 80.0 0.4 5.7e-22 78.0 0.0 2.0 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|218884735|ref|YP_002429117.1| - 1.4e-12 47.7 0.2 3.4e-12 46.5 0.2 1.7 1 0 0 1 1 1 1 S1 RNA binding domain DUF1075 PF06388.11 gi|218884735|ref|YP_002429117.1| - 0.058 13.5 1.2 0.091 12.8 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1075) DUF4364 PF14277.6 gi|218884735|ref|YP_002429117.1| - 0.076 12.8 2.8 1.8 8.3 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) S1_2 PF13509.6 gi|218884735|ref|YP_002429117.1| - 0.11 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 S1 domain Cdc6_C PF09079.11 gi|218884738|ref|YP_002429120.1| - 4.4e-18 65.0 0.4 1.1e-17 63.7 0.2 1.8 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|218884738|ref|YP_002429120.1| - 6.7e-13 49.1 0.0 1.4e-12 48.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|218884738|ref|YP_002429120.1| - 9e-09 35.9 0.3 1.8e-07 31.7 0.1 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|218884738|ref|YP_002429120.1| - 3e-07 30.4 0.0 6.3e-07 29.3 0.0 1.5 2 0 0 2 2 1 1 AAA domain TniB PF05621.11 gi|218884738|ref|YP_002429120.1| - 1.9e-05 24.2 0.0 3.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|218884738|ref|YP_002429120.1| - 2.1e-05 24.5 0.0 3.8e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.22 gi|218884738|ref|YP_002429120.1| - 5.2e-05 22.6 0.0 0.00011 21.4 0.0 1.6 1 0 0 1 1 1 1 NB-ARC domain ATPase_2 PF01637.18 gi|218884738|ref|YP_002429120.1| - 0.00011 22.1 1.3 0.00046 20.2 0.2 2.4 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|218884738|ref|YP_002429120.1| - 0.0011 18.9 0.0 0.0026 17.7 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|218884738|ref|YP_002429120.1| - 0.0017 18.8 0.0 0.0041 17.5 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|218884738|ref|YP_002429120.1| - 0.0041 17.6 0.0 0.012 16.2 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_7 PF12775.7 gi|218884738|ref|YP_002429120.1| - 0.0049 16.4 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|218884738|ref|YP_002429120.1| - 0.0068 16.5 0.0 0.021 14.9 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase TIP49_C PF17856.1 gi|218884738|ref|YP_002429120.1| - 0.0077 16.3 0.3 4.3 7.5 0.0 2.6 2 0 0 2 2 2 1 TIP49 AAA-lid domain Bac_DnaA PF00308.18 gi|218884738|ref|YP_002429120.1| - 0.016 15.1 0.1 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein ATPase PF06745.13 gi|218884738|ref|YP_002429120.1| - 0.016 14.6 0.3 0.082 12.2 0.0 2.0 2 0 0 2 2 2 0 KaiC Roc PF08477.13 gi|218884738|ref|YP_002429120.1| - 0.016 15.4 0.0 0.072 13.3 0.0 2.0 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|218884738|ref|YP_002429120.1| - 0.023 14.7 0.1 0.068 13.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|218884738|ref|YP_002429120.1| - 0.023 14.7 0.0 0.59 10.1 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit PduV-EutP PF10662.9 gi|218884738|ref|YP_002429120.1| - 0.036 13.8 0.1 0.12 12.1 0.1 1.8 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.6 gi|218884738|ref|YP_002429120.1| - 0.044 13.5 0.0 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|218884738|ref|YP_002429120.1| - 0.084 12.9 0.2 0.31 11.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|218884738|ref|YP_002429120.1| - 0.088 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|218884738|ref|YP_002429120.1| - 0.088 13.4 0.0 0.2 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain Ocnus PF05005.15 gi|218884738|ref|YP_002429120.1| - 0.091 12.9 0.0 0.28 11.3 0.0 1.8 1 0 0 1 1 1 0 Janus/Ocnus family (Ocnus) FtsK_SpoIIIE PF01580.18 gi|218884738|ref|YP_002429120.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.6 gi|218884738|ref|YP_002429120.1| - 0.21 12.1 2.0 0.94 9.9 2.0 2.3 1 1 0 1 1 1 0 AAA domain ASCH PF04266.14 gi|218884741|ref|YP_002429123.1| - 0.00011 22.7 0.0 0.00013 22.5 0.0 1.1 1 0 0 1 1 1 1 ASCH domain HTH_1 PF00126.27 gi|218884742|ref|YP_002429124.1| - 0.045 13.7 0.0 0.07 13.1 0.0 1.4 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family ABC_tran PF00005.27 gi|218884744|ref|YP_002429126.1| - 3.7e-31 108.5 0.0 5.1e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218884744|ref|YP_002429126.1| - 2e-11 44.3 4.2 2.4e-05 24.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|218884744|ref|YP_002429126.1| - 2.1e-05 24.4 0.0 3.4e-05 23.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|218884744|ref|YP_002429126.1| - 3e-05 24.5 0.1 4.8e-05 23.8 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|218884744|ref|YP_002429126.1| - 0.00015 22.3 0.0 0.00027 21.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|218884744|ref|YP_002429126.1| - 0.00023 20.8 0.0 0.00049 19.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|218884744|ref|YP_002429126.1| - 0.00079 19.7 2.2 0.015 15.6 2.2 2.1 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|218884744|ref|YP_002429126.1| - 0.0012 18.2 0.0 0.0021 17.5 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SMC_N PF02463.19 gi|218884744|ref|YP_002429126.1| - 0.0014 18.1 0.3 0.01 15.3 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|218884744|ref|YP_002429126.1| - 0.0019 17.9 0.2 0.0077 16.0 0.0 2.0 3 0 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|218884744|ref|YP_002429126.1| - 0.0023 18.0 0.1 0.031 14.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|218884744|ref|YP_002429126.1| - 0.0054 15.6 0.5 1.1 8.0 0.1 2.4 2 1 0 2 2 2 2 Predicted ATPase of the ABC class NACHT PF05729.12 gi|218884744|ref|YP_002429126.1| - 0.011 15.7 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|218884744|ref|YP_002429126.1| - 0.012 15.7 0.1 0.027 14.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|218884744|ref|YP_002429126.1| - 0.022 15.1 0.1 0.038 14.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|218884744|ref|YP_002429126.1| - 0.026 13.3 0.1 0.038 12.8 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_24 PF13479.6 gi|218884744|ref|YP_002429126.1| - 0.03 14.1 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|218884744|ref|YP_002429126.1| - 0.032 14.0 0.0 0.092 12.5 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family cobW PF02492.19 gi|218884744|ref|YP_002429126.1| - 0.032 13.8 0.8 0.069 12.7 0.2 1.8 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|218884744|ref|YP_002429126.1| - 0.036 14.5 0.6 0.21 12.0 0.6 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|218884744|ref|YP_002429126.1| - 0.042 13.0 0.0 0.085 12.0 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain ATP_bind_1 PF03029.17 gi|218884744|ref|YP_002429126.1| - 0.054 13.3 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ATPase_2 PF01637.18 gi|218884744|ref|YP_002429126.1| - 0.059 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|218884744|ref|YP_002429126.1| - 0.073 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|218884744|ref|YP_002429126.1| - 0.095 12.5 0.1 0.16 11.8 0.1 1.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase RsgA_GTPase PF03193.16 gi|218884744|ref|YP_002429126.1| - 0.096 12.6 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 gi|218884744|ref|YP_002429126.1| - 0.1 12.6 0.1 1.4 8.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA12 PF10443.9 gi|218884744|ref|YP_002429126.1| - 0.11 11.1 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein SRP54 PF00448.22 gi|218884744|ref|YP_002429126.1| - 0.14 11.8 0.1 0.25 11.0 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|218884744|ref|YP_002429126.1| - 0.16 11.2 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|218884744|ref|YP_002429126.1| - 0.22 11.8 0.1 0.92 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|218884744|ref|YP_002429126.1| - 0.24 8.9 0.0 0.31 8.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FecCD PF01032.18 gi|218884745|ref|YP_002429127.1| - 2.6e-77 259.9 37.5 3.2e-77 259.6 37.5 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|218884746|ref|YP_002429128.1| - 7.3e-19 68.3 0.0 9.5e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FmdE PF02663.14 gi|218884747|ref|YP_002429129.1| - 4e-37 127.2 0.0 5.2e-37 126.8 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|218884747|ref|YP_002429129.1| - 7.1e-09 35.5 1.3 1.3e-08 34.6 1.3 1.4 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|218884747|ref|YP_002429129.1| - 0.14 12.4 0.2 0.32 11.2 0.2 1.5 1 0 0 1 1 1 0 LIM domain Peptidase_S24 PF00717.23 gi|218884748|ref|YP_002429130.1| - 2.7e-11 43.3 0.4 4.6e-11 42.5 0.4 1.4 1 0 0 1 1 1 1 Peptidase S24-like zinc_ribbon_5 PF13719.6 gi|218884749|ref|YP_002429131.1| - 0.002 17.8 4.2 0.022 14.5 0.4 2.2 2 0 0 2 2 2 1 zinc-ribbon domain TFIIS_C PF01096.18 gi|218884749|ref|YP_002429131.1| - 0.0069 16.2 3.9 0.87 9.5 0.8 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) HypA PF01155.19 gi|218884749|ref|YP_002429131.1| - 0.0079 16.2 0.2 2.7 8.1 0.1 2.2 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA YokU PF14122.6 gi|218884749|ref|YP_002429131.1| - 0.039 13.9 0.3 0.059 13.4 0.3 1.3 1 0 0 1 1 1 0 YokU-like protein, putative antitoxin Elf1 PF05129.13 gi|218884749|ref|YP_002429131.1| - 0.046 13.8 0.3 0.089 12.9 0.3 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_13 PF09855.9 gi|218884749|ref|YP_002429131.1| - 0.06 13.5 3.1 0.34 11.1 2.0 2.4 2 1 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn-ribbon_8 PF09723.10 gi|218884749|ref|YP_002429131.1| - 0.094 12.8 1.3 1.7 8.9 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|218884749|ref|YP_002429131.1| - 0.13 11.7 2.9 3.6 7.1 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|218884749|ref|YP_002429131.1| - 0.15 12.2 5.1 0.66 10.1 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|218884749|ref|YP_002429131.1| - 0.35 10.8 8.0 0.48 10.4 0.4 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zf-Dof PF02701.15 gi|218884749|ref|YP_002429131.1| - 1 9.5 4.6 3.1 8.0 0.2 2.2 2 0 0 2 2 2 0 Dof domain, zinc finger Enolase_C PF00113.22 gi|218884751|ref|YP_002429133.1| - 5.9e-115 383.6 0.0 7.7e-115 383.2 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|218884751|ref|YP_002429133.1| - 3e-53 179.5 0.2 5.8e-53 178.6 0.2 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|218884751|ref|YP_002429133.1| - 1.1e-07 31.7 0.0 1.7e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|218884751|ref|YP_002429133.1| - 0.0003 20.0 0.0 0.00051 19.3 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus DHHC PF01529.20 gi|218884752|ref|YP_002429134.1| - 0.79 9.8 3.6 0.85 9.7 3.6 1.2 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF2721 PF11026.8 gi|218884752|ref|YP_002429134.1| - 1.5 8.7 8.2 2.8 7.8 6.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) TMEM43 PF07787.12 gi|218884752|ref|YP_002429134.1| - 2.8 7.3 8.2 3.1 7.1 8.2 1.1 1 0 0 1 1 1 0 Transmembrane protein 43 AA_kinase PF00696.28 gi|218884753|ref|YP_002429135.1| - 1.2e-27 97.1 0.0 1.4e-27 96.8 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family DUF4276 PF14103.6 gi|218884753|ref|YP_002429135.1| - 0.029 14.6 0.0 0.044 14.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4276) DUF4505 PF14956.6 gi|218884753|ref|YP_002429135.1| - 0.096 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4505) GT87 PF09594.10 gi|218884754|ref|YP_002429136.1| - 2.5e-07 30.7 22.6 2.5e-07 30.7 22.6 2.7 2 1 0 2 2 2 1 Glycosyltransferase family 87 Aldedh PF00171.22 gi|218884755|ref|YP_002429137.1| - 3.1e-119 398.5 0.0 3.5e-119 398.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|218884755|ref|YP_002429137.1| - 0.0006 19.0 0.0 0.0023 17.0 0.0 1.7 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) TP_methylase PF00590.20 gi|218884756|ref|YP_002429138.1| - 5.4e-22 78.8 0.0 6.4e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TBPIP PF07106.13 gi|218884756|ref|YP_002429138.1| - 0.11 12.4 0.0 25 4.9 0.0 2.6 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain OTCace PF00185.24 gi|218884756|ref|YP_002429138.1| - 0.13 12.3 0.0 20 5.2 0.0 2.3 2 0 0 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABC_tran PF00005.27 gi|218884757|ref|YP_002429139.1| - 7.1e-24 84.9 0.1 9.1e-24 84.5 0.1 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|218884757|ref|YP_002429139.1| - 1.2e-15 58.1 0.3 6.9e-08 32.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|218884757|ref|YP_002429139.1| - 1.4e-09 38.2 0.0 2.9e-05 24.0 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|218884757|ref|YP_002429139.1| - 6e-07 29.1 0.0 0.015 14.8 0.0 2.8 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|218884757|ref|YP_002429139.1| - 1.8e-05 25.2 0.0 2.6e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|218884757|ref|YP_002429139.1| - 5.5e-05 23.8 0.0 7.3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|218884757|ref|YP_002429139.1| - 0.00046 19.9 0.3 0.0012 18.5 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|218884757|ref|YP_002429139.1| - 0.00051 18.9 0.0 0.0011 17.9 0.0 1.5 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA PF00004.29 gi|218884757|ref|YP_002429139.1| - 0.0027 18.1 0.1 0.018 15.5 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|218884757|ref|YP_002429139.1| - 0.0048 16.9 0.1 0.19 11.8 0.0 2.4 1 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|218884757|ref|YP_002429139.1| - 0.0056 17.2 0.0 0.017 15.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF2813 PF11398.8 gi|218884757|ref|YP_002429139.1| - 0.012 14.9 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) DEAD PF00270.29 gi|218884757|ref|YP_002429139.1| - 0.014 15.1 0.1 0.035 13.9 0.1 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_27 PF13514.6 gi|218884757|ref|YP_002429139.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|218884757|ref|YP_002429139.1| - 0.021 15.1 0.1 0.029 14.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|218884757|ref|YP_002429139.1| - 0.023 14.9 0.0 0.081 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|218884757|ref|YP_002429139.1| - 0.029 14.3 0.1 0.08 12.9 0.1 1.8 2 1 0 2 2 2 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|218884757|ref|YP_002429139.1| - 0.034 14.4 0.0 0.057 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|218884757|ref|YP_002429139.1| - 0.035 14.1 0.1 0.065 13.2 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_PrkA PF08298.11 gi|218884757|ref|YP_002429139.1| - 0.089 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain ATPase_2 PF01637.18 gi|218884757|ref|YP_002429139.1| - 0.11 12.4 0.0 0.16 11.8 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|218884757|ref|YP_002429139.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|218884757|ref|YP_002429139.1| - 0.21 9.1 0.1 0.27 8.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_30 PF13604.6 gi|218884757|ref|YP_002429139.1| - 0.23 11.1 0.0 0.32 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|218884758|ref|YP_002429140.1| - 1.4e-59 201.6 32.2 1.8e-59 201.3 32.2 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|218884759|ref|YP_002429141.1| - 5.8e-18 65.3 0.0 8.1e-18 64.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein N_methyl PF07963.12 gi|218884760|ref|YP_002429142.1| - 0.1 12.2 0.3 0.22 11.2 0.3 1.6 1 0 0 1 1 1 0 Prokaryotic N-terminal methylation motif Isochorismatase PF00857.20 gi|218884761|ref|YP_002429143.1| - 5.2e-43 147.2 0.0 5.7e-43 147.1 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family ELFV_dehydrog PF00208.21 gi|218884762|ref|YP_002429144.1| - 9.8e-75 251.4 0.2 1.3e-74 251.0 0.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|218884762|ref|YP_002429144.1| - 5.7e-50 168.6 0.0 1.1e-49 167.7 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|218884762|ref|YP_002429144.1| - 0.00013 21.4 0.1 0.00029 20.3 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|218884762|ref|YP_002429144.1| - 0.0027 17.8 0.8 0.033 14.3 0.2 2.2 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Bac_GDH PF05088.12 gi|218884762|ref|YP_002429144.1| - 0.0098 13.4 0.0 0.014 13.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase DUF3158 PF11358.8 gi|218884762|ref|YP_002429144.1| - 0.02 14.7 0.0 0.06 13.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3158) NAD_binding_7 PF13241.6 gi|218884762|ref|YP_002429144.1| - 0.047 14.1 0.1 0.098 13.1 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiF PF00899.21 gi|218884762|ref|YP_002429144.1| - 0.094 12.1 0.1 0.2 11.0 0.1 1.5 1 0 0 1 1 1 0 ThiF family MJ1316 PF04457.12 gi|218884763|ref|YP_002429145.1| - 7e-06 26.7 0.2 8.4e-06 26.4 0.2 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Phage_holin_3_6 PF07332.11 gi|218884764|ref|YP_002429146.1| - 0.021 14.8 0.3 0.023 14.7 0.3 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DPM3 PF08285.11 gi|218884764|ref|YP_002429146.1| - 0.066 13.4 3.4 0.075 13.2 3.4 1.0 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF3043 PF11241.8 gi|218884764|ref|YP_002429146.1| - 0.53 10.3 2.0 0.58 10.2 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) OrfB_Zn_ribbon PF07282.11 gi|218884765|ref|YP_002429147.1| - 0.011 15.6 0.1 0.028 14.3 0.0 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain polyprenyl_synt PF00348.17 gi|218884766|ref|YP_002429148.1| - 4.3e-54 183.3 0.0 5.8e-54 182.8 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase CNOT11 PF10155.9 gi|218884766|ref|YP_002429148.1| - 0.0016 18.6 0.2 0.0033 17.6 0.2 1.5 1 0 0 1 1 1 1 CCR4-NOT transcription complex subunit 11 PIN_6 PF17146.4 gi|218884766|ref|YP_002429148.1| - 0.0058 17.1 0.1 0.014 15.8 0.1 1.6 1 0 0 1 1 1 1 PIN domain of ribonuclease GcpE PF04551.14 gi|218884766|ref|YP_002429148.1| - 0.074 12.1 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 GcpE protein OMPdecase PF00215.24 gi|218884767|ref|YP_002429149.1| - 5e-23 81.9 1.3 6.3e-23 81.5 1.3 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family QRPTase_C PF01729.19 gi|218884767|ref|YP_002429149.1| - 6.9e-05 22.7 0.2 0.00016 21.5 0.2 1.7 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain Ribul_P_3_epim PF00834.19 gi|218884767|ref|YP_002429149.1| - 0.00066 19.1 0.5 0.00085 18.8 0.5 1.5 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.21 gi|218884767|ref|YP_002429149.1| - 0.00078 19.0 0.4 0.0015 18.1 0.3 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.14 gi|218884767|ref|YP_002429149.1| - 0.0013 18.0 0.1 0.0022 17.2 0.1 1.4 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase PEP_mutase PF13714.6 gi|218884767|ref|YP_002429149.1| - 0.0031 17.0 0.5 0.077 12.4 0.1 2.1 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase FMN_dh PF01070.18 gi|218884767|ref|YP_002429149.1| - 0.0088 15.1 0.2 0.011 14.8 0.2 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|218884767|ref|YP_002429149.1| - 0.011 14.8 1.9 0.011 14.7 1.9 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|218884767|ref|YP_002429149.1| - 0.018 14.3 0.2 0.037 13.4 0.2 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase ThiG PF05690.14 gi|218884767|ref|YP_002429149.1| - 0.027 13.8 1.1 0.049 12.9 0.4 1.6 1 1 0 1 1 1 0 Thiazole biosynthesis protein ThiG 4HFCP_synth PF04476.13 gi|218884767|ref|YP_002429149.1| - 0.037 13.8 0.1 0.2 11.3 0.0 1.8 1 1 1 2 2 2 0 4-HFC-P synthase Ala_racemase_N PF01168.20 gi|218884767|ref|YP_002429149.1| - 0.04 13.6 0.0 1.4 8.5 0.0 2.2 1 1 0 2 2 2 0 Alanine racemase, N-terminal domain PEP_hydrolase PF09370.10 gi|218884767|ref|YP_002429149.1| - 0.055 12.7 0.4 0.22 10.7 0.1 2.0 2 1 0 2 2 2 0 Phosphoenolpyruvate hydrolase-like tRNA-synt_1b PF00579.25 gi|218884768|ref|YP_002429150.1| - 1.8e-44 152.3 0.0 3.5e-44 151.3 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|218884768|ref|YP_002429150.1| - 0.034 13.1 0.0 0.61 8.9 0.0 2.7 4 0 0 4 4 4 0 tRNA synthetases class I (K) SIS PF01380.22 gi|218884769|ref|YP_002429151.1| - 6.4e-38 129.6 0.9 1.5e-24 86.3 0.8 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|218884769|ref|YP_002429151.1| - 9.6e-14 51.7 0.0 1.8e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|218884769|ref|YP_002429151.1| - 1.2e-09 38.1 0.0 2.8e-09 36.9 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|218884769|ref|YP_002429151.1| - 0.0001 22.3 0.9 0.00019 21.5 0.5 1.6 1 1 0 1 1 1 1 SIS domain GATase_4 PF13230.6 gi|218884769|ref|YP_002429151.1| - 0.027 13.4 0.0 0.04 12.8 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II GCH_III PF05165.12 gi|218884770|ref|YP_002429152.1| - 0.00071 18.9 0.0 0.022 14.0 0.0 2.5 2 1 0 2 2 2 2 GTP cyclohydrolase III Snf7 PF03357.21 gi|218884772|ref|YP_002429154.1| - 0.003 17.2 0.4 0.003 17.2 0.4 1.8 1 1 1 2 2 2 1 Snf7 Sigma70_r4_2 PF08281.12 gi|218884772|ref|YP_002429154.1| - 0.0084 15.8 0.5 0.025 14.3 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 DUF5388 PF17363.2 gi|218884772|ref|YP_002429154.1| - 0.036 14.3 0.1 0.081 13.1 0.1 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5388) HisK_N PF09385.10 gi|218884772|ref|YP_002429154.1| - 0.036 14.0 0.8 0.077 13.0 0.8 1.5 1 0 0 1 1 1 0 Histidine kinase N terminal DUF4125 PF13526.6 gi|218884772|ref|YP_002429154.1| - 0.081 12.5 1.6 0.069 12.8 0.5 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4125) LOH1CR12 PF10158.9 gi|218884772|ref|YP_002429154.1| - 0.14 12.2 1.5 0.28 11.2 0.5 2.0 2 0 0 2 2 2 0 Tumour suppressor protein DUF5402 PF17393.2 gi|218884773|ref|YP_002429155.1| - 0.069 13.1 1.1 4.6 7.2 0.1 2.2 1 1 0 2 2 2 0 Family of unknown function (DUF5402) AIRS_C PF02769.22 gi|218884774|ref|YP_002429156.1| - 2.7e-17 63.3 0.3 4.2e-17 62.7 0.3 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|218884774|ref|YP_002429156.1| - 7.7e-12 45.7 0.1 1.8e-11 44.5 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TatD_DNase PF01026.21 gi|218884775|ref|YP_002429157.1| - 4e-18 65.7 0.0 4.9e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase Amdase PF17645.1 gi|218884775|ref|YP_002429157.1| - 0.016 14.9 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 Arylmalonate decarboxylase ABC_cobalt PF09819.9 gi|218884776|ref|YP_002429158.1| - 9.5e-34 116.1 8.1 9.5e-34 116.1 8.1 1.9 2 0 0 2 2 2 1 ABC-type cobalt transport system, permease component DUF3060 PF11259.8 gi|218884777|ref|YP_002429159.1| - 0.058 13.1 0.5 0.21 11.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3060) NAD_synthase PF02540.17 gi|218884778|ref|YP_002429160.1| - 1.8e-73 246.6 0.0 2.2e-73 246.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|218884778|ref|YP_002429160.1| - 0.00014 20.8 0.0 0.0026 16.6 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Arginosuc_synth PF00764.19 gi|218884778|ref|YP_002429160.1| - 0.1 11.8 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase QueC PF06508.13 gi|218884778|ref|YP_002429160.1| - 0.19 11.2 0.0 0.54 9.7 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC AMMECR1 PF01871.17 gi|218884780|ref|YP_002429162.1| - 1.6e-47 161.2 0.0 1.9e-47 161.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Mut7-C PF01927.16 gi|218884781|ref|YP_002429163.1| - 2.8e-43 147.5 0.0 3.3e-43 147.3 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|218884781|ref|YP_002429163.1| - 3.1e-05 23.6 0.0 5.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) CBS PF00571.28 gi|218884782|ref|YP_002429164.1| - 4.5e-24 84.7 2.1 3e-06 27.6 0.0 4.2 4 0 0 4 4 4 4 CBS domain Zds_C PF08632.10 gi|218884782|ref|YP_002429164.1| - 0.096 12.4 0.1 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 Activator of mitotic machinery Cdc14 phosphatase activation C-term Acetyltransf_1 PF00583.25 gi|218884782|ref|YP_002429164.1| - 0.16 12.2 0.0 0.91 9.8 0.0 2.2 2 1 1 3 3 3 0 Acetyltransferase (GNAT) family CBS PF00571.28 gi|218884783|ref|YP_002429165.1| - 1e-46 157.2 10.6 6.3e-15 55.4 1.1 4.2 4 0 0 4 4 4 4 CBS domain Resolvase PF00239.21 gi|218884784|ref|YP_002429166.1| - 9.6e-25 87.4 0.7 1.4e-24 86.9 0.7 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|218884784|ref|YP_002429166.1| - 6.6e-08 32.6 0.0 1.2e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|218884784|ref|YP_002429166.1| - 0.0019 18.0 1.4 0.0026 17.5 0.0 2.0 3 0 0 3 3 3 1 MerR family regulatory protein HTH_23 PF13384.6 gi|218884784|ref|YP_002429166.1| - 0.012 15.4 0.0 0.028 14.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MerR_1 PF13411.6 gi|218884784|ref|YP_002429166.1| - 0.042 13.9 0.0 0.08 13.0 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_28 PF13518.6 gi|218884784|ref|YP_002429166.1| - 0.045 13.9 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Helicase_C PF00271.31 gi|218884784|ref|YP_002429166.1| - 0.07 13.5 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Helicase conserved C-terminal domain HTH_29 PF13551.6 gi|218884784|ref|YP_002429166.1| - 0.095 12.7 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix OrfB_Zn_ribbon PF07282.11 gi|218884785|ref|YP_002429167.1| - 7.8e-20 70.6 0.0 1.5e-19 69.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain BTRD1 PF17660.1 gi|218884785|ref|YP_002429167.1| - 0.13 12.1 0.6 9.2 6.2 0.0 3.2 3 0 0 3 3 3 0 Bacterial tandem repeat domain 1 LepA_C PF06421.12 gi|218884785|ref|YP_002429167.1| - 0.78 9.9 4.8 1.5 9.0 3.9 1.9 1 1 0 1 1 1 0 GTP-binding protein LepA C-terminus # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_kamchatkensis_1221n_uid59133/NC_011766.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_kamchatkensis_1221n_uid59133/NC_011766.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_kamchatkensis_1221n_uid59133/NC_011766.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_kamchatkensis_1221n_uid59133/NC_011766.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 10:52:48 2019 # [ok]