# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|390937753|ref|YP_006401491.1| - 1.2e-16 60.1 1.8 3.2e-16 58.8 0.1 2.5 2 1 1 3 3 3 1 CDC6, C terminal AAA_22 PF13401.1 gi|390937753|ref|YP_006401491.1| - 2.1e-11 44.0 0.1 9.1e-11 42.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|390937753|ref|YP_006401491.1| - 4.9e-11 42.9 0.0 7.8e-10 39.0 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|390937753|ref|YP_006401491.1| - 1.4e-09 38.2 0.0 3.6e-09 36.9 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|390937753|ref|YP_006401491.1| - 6.4e-08 32.5 0.2 1.2e-07 31.6 0.1 1.5 1 0 0 1 1 1 1 Archaeal ATPase DUF2075 PF09848.4 gi|390937753|ref|YP_006401491.1| - 2.3e-05 23.5 0.0 3.1e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|390937753|ref|YP_006401491.1| - 2.4e-05 23.3 0.0 3.6e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain DUF815 PF05673.8 gi|390937753|ref|YP_006401491.1| - 0.00018 20.5 0.0 0.0004 19.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|390937753|ref|YP_006401491.1| - 0.0024 17.5 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|390937753|ref|YP_006401491.1| - 0.0057 15.5 0.1 0.015 14.2 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|390937753|ref|YP_006401491.1| - 0.0071 16.2 0.1 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|390937753|ref|YP_006401491.1| - 0.0074 15.9 0.2 0.059 13.0 0.1 2.0 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_32 PF13654.1 gi|390937753|ref|YP_006401491.1| - 0.0095 14.6 0.8 0.75 8.3 0.0 2.4 3 0 0 3 3 3 1 AAA domain Sigma54_activat PF00158.21 gi|390937753|ref|YP_006401491.1| - 0.012 15.0 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain DEAD PF00270.24 gi|390937753|ref|YP_006401491.1| - 0.016 14.6 0.4 2.5 7.5 0.1 2.3 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_24 PF13479.1 gi|390937753|ref|YP_006401491.1| - 0.041 13.4 1.2 0.11 12.0 0.3 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|390937753|ref|YP_006401491.1| - 0.041 13.6 0.0 0.12 12.1 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain PIF1 PF05970.9 gi|390937753|ref|YP_006401491.1| - 0.044 12.7 0.0 0.17 10.8 0.0 1.9 2 0 0 2 2 2 0 PIF1-like helicase AAA_18 PF13238.1 gi|390937753|ref|YP_006401491.1| - 0.06 13.6 0.2 0.14 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|390937753|ref|YP_006401491.1| - 0.066 12.6 0.0 5.1 6.4 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein KAP_NTPase PF07693.9 gi|390937753|ref|YP_006401491.1| - 0.072 12.0 0.0 0.087 11.7 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain FtsK_SpoIIIE PF01580.13 gi|390937753|ref|YP_006401491.1| - 0.093 12.1 0.0 0.17 11.3 0.0 1.5 1 1 0 1 1 1 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|390937753|ref|YP_006401491.1| - 0.12 13.2 3.2 0.37 11.6 2.2 2.2 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|390937753|ref|YP_006401491.1| - 0.13 12.4 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.1 gi|390937753|ref|YP_006401491.1| - 0.18 11.1 0.9 6 6.2 0.2 2.6 2 1 0 2 2 2 0 AAA domain DUF99 PF01949.11 gi|390937754|ref|YP_006401492.1| - 1e-35 122.5 0.0 1.2e-35 122.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF1799 PF08809.6 gi|390937754|ref|YP_006401492.1| - 0.1 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Phage related hypothetical protein (DUF1799) PEPCK PF00821.13 gi|390937755|ref|YP_006401493.1| - 2.5e-182 607.1 0.0 2.9e-182 606.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase Aminotran_3 PF00202.16 gi|390937756|ref|YP_006401494.1| - 7.3e-96 320.9 0.0 8.6e-96 320.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III PyrI PF01948.13 gi|390937756|ref|YP_006401494.1| - 0.052 13.5 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, allosteric domain DUF2899 PF11449.3 gi|390937757|ref|YP_006401495.1| - 0.08 12.1 1.2 0.094 11.8 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2899) Na_Ala_symp PF01235.12 gi|390937758|ref|YP_006401496.1| - 3.7e-99 332.1 24.6 4.7e-99 331.7 17.0 1.1 1 0 0 1 1 1 1 Sodium:alanine symporter family Radical_SAM PF04055.16 gi|390937759|ref|YP_006401497.1| - 1.3e-24 87.1 0.0 1.3e-24 87.1 0.0 2.3 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|390937759|ref|YP_006401497.1| - 3.8e-11 43.0 0.8 1e-10 41.6 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|390937759|ref|YP_006401497.1| - 8.1e-10 38.9 0.1 1.9e-09 37.7 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain zf-CHC2 PF01807.15 gi|390937759|ref|YP_006401497.1| - 0.038 13.5 0.8 1.3 8.6 0.3 2.6 2 0 0 2 2 2 0 CHC2 zinc finger Molybdop_Fe4S4 PF04879.11 gi|390937759|ref|YP_006401497.1| - 1.4 8.7 6.7 22 4.9 0.5 3.8 4 0 0 4 4 4 0 Molybdopterin oxidoreductase Fe4S4 domain AAA_18 PF13238.1 gi|390937760|ref|YP_006401498.1| - 2.1e-21 76.5 0.0 2.6e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|390937760|ref|YP_006401498.1| - 1.5e-11 45.1 0.0 3.6e-11 43.9 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|390937760|ref|YP_006401498.1| - 0.00027 21.1 0.0 0.0029 17.7 0.0 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|390937760|ref|YP_006401498.1| - 0.0011 18.9 0.1 0.0021 18.0 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|390937760|ref|YP_006401498.1| - 0.0013 18.5 0.3 0.011 15.6 0.1 2.3 1 1 1 2 2 2 1 AAA domain CPT PF07931.7 gi|390937760|ref|YP_006401498.1| - 0.0042 16.7 0.0 1.6 8.3 0.0 2.2 2 0 0 2 2 2 2 Chloramphenicol phosphotransferase-like protein AAA_19 PF13245.1 gi|390937760|ref|YP_006401498.1| - 0.0064 16.2 0.6 0.012 15.3 0.4 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|390937760|ref|YP_006401498.1| - 0.0087 15.7 0.0 0.02 14.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) KaiC PF06745.8 gi|390937760|ref|YP_006401498.1| - 0.0095 15.0 0.1 0.39 9.8 0.1 2.1 2 0 0 2 2 2 1 KaiC Viral_helicase1 PF01443.13 gi|390937760|ref|YP_006401498.1| - 0.013 15.0 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|390937760|ref|YP_006401498.1| - 0.021 13.9 0.6 0.034 13.2 0.1 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.1 gi|390937760|ref|YP_006401498.1| - 0.022 14.8 0.1 0.045 13.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|390937760|ref|YP_006401498.1| - 0.024 13.5 0.0 0.029 13.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|390937760|ref|YP_006401498.1| - 0.039 13.9 0.3 0.07 13.1 0.2 1.3 1 0 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.5 gi|390937760|ref|YP_006401498.1| - 0.068 12.3 0.0 0.096 11.8 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AnfG_VnfG PF03139.10 gi|390937760|ref|YP_006401498.1| - 0.086 12.6 0.1 0.17 11.6 0.0 1.5 2 0 0 2 2 1 0 Vanadium/alternative nitrogenase delta subunit IPT PF01745.11 gi|390937760|ref|YP_006401498.1| - 0.14 11.2 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Isopentenyl transferase MMR_HSR1 PF01926.18 gi|390937761|ref|YP_006401499.1| - 9.6e-15 54.5 0.0 3e-10 40.0 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|390937761|ref|YP_006401499.1| - 5.1e-08 32.9 0.2 0.067 13.0 0.0 3.1 2 1 1 3 3 3 2 Dynamin family FeoB_N PF02421.13 gi|390937761|ref|YP_006401499.1| - 1.1e-07 31.2 0.0 0.00019 20.7 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B DUF258 PF03193.11 gi|390937761|ref|YP_006401499.1| - 5.5e-06 25.6 0.0 8.6e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|390937761|ref|YP_006401499.1| - 0.00014 21.3 0.0 0.00065 19.1 0.0 1.8 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|390937761|ref|YP_006401499.1| - 0.0028 18.1 0.0 0.77 10.2 0.0 2.2 2 0 0 2 2 2 1 Miro-like protein AAA_16 PF13191.1 gi|390937761|ref|YP_006401499.1| - 0.0073 16.3 0.2 0.042 13.8 0.0 2.1 3 0 0 3 3 3 1 AAA ATPase domain PduV-EutP PF10662.4 gi|390937761|ref|YP_006401499.1| - 0.037 13.5 0.0 0.071 12.6 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.1 gi|390937761|ref|YP_006401499.1| - 0.047 14.5 0.1 0.13 13.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain ThiS PF02597.15 gi|390937762|ref|YP_006401500.1| - 0.014 15.7 0.1 0.017 15.5 0.1 1.2 1 0 0 1 1 1 0 ThiS family ThiS-like PF14453.1 gi|390937762|ref|YP_006401500.1| - 0.02 14.7 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 ThiS-like ubiquitin MarR_2 PF12802.2 gi|390937762|ref|YP_006401500.1| - 0.078 12.6 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 MarR family ThiF PF00899.16 gi|390937763|ref|YP_006401501.1| - 1.5e-39 134.8 0.0 2e-39 134.5 0.0 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|390937763|ref|YP_006401501.1| - 1.6e-08 34.0 0.0 2.6e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|390937763|ref|YP_006401501.1| - 0.0039 17.3 0.1 0.0096 16.0 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|390937763|ref|YP_006401501.1| - 0.097 11.6 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase ThiS PF02597.15 gi|390937764|ref|YP_006401502.1| - 3.5e-07 30.5 0.0 4.4e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.16 gi|390937764|ref|YP_006401502.1| - 9.9e-05 21.8 0.4 0.22 11.1 0.1 2.1 1 1 1 2 2 2 2 TrkA-C domain SH3_9 PF14604.1 gi|390937764|ref|YP_006401502.1| - 0.028 14.0 0.0 0.95 9.0 0.0 2.5 2 1 0 2 2 2 0 Variant SH3 domain FHA PF00498.21 gi|390937764|ref|YP_006401502.1| - 0.043 13.9 0.0 0.1 12.7 0.0 1.7 2 0 0 2 2 2 0 FHA domain Ub-RnfH PF03658.9 gi|390937764|ref|YP_006401502.1| - 0.12 12.2 0.0 1.3 8.9 0.0 2.0 1 1 0 1 1 1 0 RnfH family Ubiquitin S4 PF01479.20 gi|390937764|ref|YP_006401502.1| - 0.13 11.7 0.2 0.24 10.8 0.0 1.5 2 0 0 2 2 2 0 S4 domain Gluconate_2-dh3 PF13618.1 gi|390937765|ref|YP_006401503.1| - 0.089 12.9 0.0 0.089 12.9 0.0 1.1 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 DUF2148 PF09918.4 gi|390937766|ref|YP_006401504.1| - 9e-31 105.4 0.4 9e-31 105.4 0.3 1.9 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) DALR_1 PF05746.10 gi|390937766|ref|YP_006401504.1| - 0.00013 21.9 0.1 0.00018 21.4 0.1 1.3 1 0 0 1 1 1 1 DALR anticodon binding domain DHQS PF01959.11 gi|390937766|ref|YP_006401504.1| - 0.15 10.7 0.7 0.19 10.4 0.5 1.1 1 0 0 1 1 1 0 3-dehydroquinate synthase (EC 4.6.1.3) BPD_transp_2 PF02653.11 gi|390937767|ref|YP_006401505.1| - 1.5e-35 122.4 36.0 1.9e-35 122.1 25.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|390937768|ref|YP_006401506.1| - 5.4e-39 133.7 36.9 5.4e-39 133.7 25.6 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|390937769|ref|YP_006401507.1| - 1.4e-52 177.5 0.0 5.2e-31 107.7 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|390937769|ref|YP_006401507.1| - 7.3e-11 42.5 0.5 5.5e-05 23.2 0.1 2.3 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|390937769|ref|YP_006401507.1| - 0.0012 17.9 0.3 0.5 9.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|390937769|ref|YP_006401507.1| - 0.0042 17.4 0.2 0.0086 16.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|390937769|ref|YP_006401507.1| - 0.0063 16.7 0.7 0.55 10.4 0.4 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|390937769|ref|YP_006401507.1| - 0.012 15.2 0.6 0.31 10.6 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|390937769|ref|YP_006401507.1| - 0.023 14.2 0.0 0.073 12.6 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|390937769|ref|YP_006401507.1| - 0.047 13.8 2.7 0.42 10.7 0.9 2.7 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|390937769|ref|YP_006401507.1| - 0.064 12.6 0.2 13 5.1 0.0 2.9 3 0 0 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|390937769|ref|YP_006401507.1| - 0.078 12.9 0.2 0.24 11.3 0.0 1.9 2 1 0 2 2 2 0 AAA ATPase domain DUF3647 PF12363.3 gi|390937769|ref|YP_006401507.1| - 0.099 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Phage protein DUF3584 PF12128.3 gi|390937769|ref|YP_006401507.1| - 0.17 9.1 0.1 0.26 8.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.1 gi|390937769|ref|YP_006401507.1| - 0.2 10.0 0.1 0.79 8.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain Bmp PF02608.9 gi|390937770|ref|YP_006401508.1| - 2.6e-80 269.4 0.1 3.3e-80 269.0 0.1 1.1 1 0 0 1 1 1 1 Basic membrane protein ADH_N PF08240.7 gi|390937771|ref|YP_006401509.1| - 4.3e-31 106.9 1.2 9.3e-31 105.8 0.9 1.5 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|390937771|ref|YP_006401509.1| - 6.5e-18 64.5 0.0 1.1e-17 63.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|390937771|ref|YP_006401509.1| - 0.0002 22.2 0.1 0.00049 20.9 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.17 gi|390937771|ref|YP_006401509.1| - 0.00044 20.7 0.0 0.0011 19.4 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|390937771|ref|YP_006401509.1| - 0.083 12.0 0.0 0.16 11.1 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LacAB_rpiB PF02502.13 gi|390937772|ref|YP_006401510.1| - 1.3e-38 131.7 0.0 1.6e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Ribose/Galactose Isomerase B12-binding PF02310.14 gi|390937772|ref|YP_006401510.1| - 0.0086 15.9 0.0 0.027 14.3 0.0 1.8 1 1 0 1 1 1 1 B12 binding domain Gly_rich_SFCGS PF14272.1 gi|390937772|ref|YP_006401510.1| - 0.09 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Glycine-rich SFCGS SIS PF01380.17 gi|390937773|ref|YP_006401511.1| - 8.8e-44 148.2 0.1 2e-27 95.3 0.3 3.1 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|390937773|ref|YP_006401511.1| - 1.4e-23 83.3 0.0 3.6e-23 81.9 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|390937773|ref|YP_006401511.1| - 7.5e-22 77.5 0.9 1.7e-15 56.6 0.1 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|390937773|ref|YP_006401511.1| - 5e-17 61.7 0.0 1e-16 60.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|390937773|ref|YP_006401511.1| - 1.3e-06 28.1 0.3 0.00031 20.4 0.1 2.7 1 1 1 2 2 2 2 SIS domain GATase_4 PF13230.1 gi|390937773|ref|YP_006401511.1| - 0.00039 19.1 0.1 0.00068 18.4 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.4 gi|390937773|ref|YP_006401511.1| - 0.0086 15.7 0.0 0.15 11.7 0.0 2.6 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region DUF4631 PF15450.1 gi|390937773|ref|YP_006401511.1| - 0.046 12.0 0.0 0.073 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4631) AA_kinase PF00696.23 gi|390937774|ref|YP_006401512.1| - 8.2e-19 68.0 0.0 1e-18 67.7 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Arch_ATPase PF01637.13 gi|390937775|ref|YP_006401513.1| - 2.5e-39 135.3 2.5 3.3e-39 134.9 1.4 1.4 2 0 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|390937775|ref|YP_006401513.1| - 4.9e-08 32.9 0.5 6.9e-05 22.7 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|390937775|ref|YP_006401513.1| - 7.3e-06 26.0 0.0 2.2e-05 24.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|390937775|ref|YP_006401513.1| - 6.9e-05 23.0 0.0 0.00031 20.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|390937775|ref|YP_006401513.1| - 0.012 14.2 0.0 0.047 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|390937775|ref|YP_006401513.1| - 0.012 15.7 0.0 0.034 14.3 0.0 1.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_assoc PF14363.1 gi|390937775|ref|YP_006401513.1| - 0.13 12.2 0.1 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Domain associated at C-terminal with AAA adh_short_C2 PF13561.1 gi|390937776|ref|YP_006401514.1| - 1.5e-22 80.5 0.0 1.8e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|390937776|ref|YP_006401514.1| - 1e-15 58.0 0.0 2.2e-15 56.9 0.0 1.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|390937776|ref|YP_006401514.1| - 1.2e-09 38.0 0.0 2.9e-09 36.8 0.0 1.5 2 0 0 2 2 2 1 KR domain DUF1776 PF08643.5 gi|390937776|ref|YP_006401514.1| - 0.041 13.0 0.0 0.054 12.6 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Shikimate_DH PF01488.15 gi|390937776|ref|YP_006401514.1| - 0.13 12.4 0.0 0.72 9.9 0.0 2.1 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase SpoU_methylase PF00588.14 gi|390937777|ref|YP_006401515.1| - 6.9e-32 110.2 0.0 9.8e-32 109.7 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|390937777|ref|YP_006401515.1| - 3.5e-07 29.9 0.0 1.6e-05 24.5 0.0 2.2 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Methyltrn_RNA_3 PF02598.12 gi|390937777|ref|YP_006401515.1| - 0.016 14.5 0.0 0.7 9.1 0.0 2.1 1 1 1 2 2 2 0 Putative RNA methyltransferase MTS PF05175.9 gi|390937778|ref|YP_006401516.1| - 4.8e-17 61.8 0.0 5.5e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|390937778|ref|YP_006401516.1| - 8.8e-14 51.5 0.0 1.1e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|390937778|ref|YP_006401516.1| - 1.2e-11 44.2 0.2 1.8e-11 43.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|390937778|ref|YP_006401516.1| - 2e-09 37.1 0.0 2.6e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|390937778|ref|YP_006401516.1| - 6.3e-07 29.1 0.0 8.1e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|390937778|ref|YP_006401516.1| - 1.9e-06 28.4 0.0 2.5e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|390937778|ref|YP_006401516.1| - 1.6e-05 25.1 0.0 2.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|390937778|ref|YP_006401516.1| - 0.00013 21.1 0.0 0.00021 20.5 0.0 1.3 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.7 gi|390937778|ref|YP_006401516.1| - 0.00049 20.5 0.0 0.00091 19.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|390937778|ref|YP_006401516.1| - 0.0011 19.4 0.0 0.0018 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|390937778|ref|YP_006401516.1| - 0.0039 16.7 0.0 0.006 16.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_16 PF10294.4 gi|390937778|ref|YP_006401516.1| - 0.012 15.0 0.3 0.019 14.4 0.2 1.3 1 0 0 1 1 1 0 Putative methyltransferase Met_10 PF02475.11 gi|390937778|ref|YP_006401516.1| - 0.017 14.7 0.0 0.022 14.3 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein TRM PF02005.11 gi|390937778|ref|YP_006401516.1| - 0.038 12.9 0.0 0.054 12.4 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_23 PF13489.1 gi|390937778|ref|YP_006401516.1| - 0.065 12.9 0.0 0.09 12.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|390937779|ref|YP_006401517.1| - 1.9e-34 118.9 0.0 2.1e-34 118.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.2 gi|390937779|ref|YP_006401517.1| - 0.00035 21.1 0.0 0.00085 19.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|390937779|ref|YP_006401517.1| - 0.0016 18.7 0.0 0.0033 17.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|390937779|ref|YP_006401517.1| - 0.0022 17.0 0.0 0.0042 16.1 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.9 gi|390937779|ref|YP_006401517.1| - 0.0044 16.4 0.0 0.0071 15.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|390937779|ref|YP_006401517.1| - 0.0046 16.5 0.0 0.0074 15.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|390937779|ref|YP_006401517.1| - 0.0065 16.9 0.0 0.017 15.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|390937779|ref|YP_006401517.1| - 0.04 13.3 0.0 0.061 12.7 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) DUF655 PF04919.7 gi|390937780|ref|YP_006401518.1| - 6.3e-61 205.2 1.8 7.6e-61 204.9 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|390937780|ref|YP_006401518.1| - 0.00013 21.9 0.2 0.00033 20.6 0.1 1.6 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|390937780|ref|YP_006401518.1| - 0.00053 19.8 0.6 0.0012 18.7 0.1 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|390937781|ref|YP_006401519.1| - 1.1e-16 60.9 1.6 1.4e-16 60.5 1.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Biotin_lipoyl PF00364.17 gi|390937781|ref|YP_006401519.1| - 0.015 14.8 0.1 0.12 12.0 0.0 2.1 2 0 0 2 2 2 0 Biotin-requiring enzyme VIT1 PF01988.14 gi|390937781|ref|YP_006401519.1| - 0.071 12.5 0.1 0.13 11.7 0.0 1.5 1 1 1 2 2 2 0 VIT family Ribosomal_L21e PF01157.13 gi|390937782|ref|YP_006401520.1| - 3.9e-29 100.3 1.5 4.4e-29 100.2 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|390937783|ref|YP_006401521.1| - 4.5e-07 29.8 0.2 4.5e-07 29.8 0.1 2.6 2 1 1 3 3 3 1 THUMP domain OSCP PF00213.13 gi|390937783|ref|YP_006401521.1| - 0.11 12.4 0.7 3 7.6 0.0 2.5 2 0 0 2 2 2 0 ATP synthase delta (OSCP) subunit SRP54 PF00448.17 gi|390937784|ref|YP_006401522.1| - 5.9e-77 257.5 0.2 8.2e-77 257.0 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|390937784|ref|YP_006401522.1| - 5.3e-29 100.5 0.1 1.6e-28 98.9 0.1 1.8 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|390937784|ref|YP_006401522.1| - 2.6e-12 46.6 1.8 1.1e-11 44.7 0.1 2.7 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|390937784|ref|YP_006401522.1| - 1.7e-07 30.8 0.1 4.9e-07 29.3 0.1 1.7 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|390937784|ref|YP_006401522.1| - 2.3e-06 27.5 0.0 5.4e-06 26.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|390937784|ref|YP_006401522.1| - 1.4e-05 24.6 1.7 0.00012 21.5 1.2 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|390937784|ref|YP_006401522.1| - 2.2e-05 24.6 0.3 0.00013 22.1 0.0 2.4 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|390937784|ref|YP_006401522.1| - 2.4e-05 23.5 0.0 5.1e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin MMR_HSR1 PF01926.18 gi|390937784|ref|YP_006401522.1| - 0.00017 21.4 0.1 0.00042 20.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase MobB PF03205.9 gi|390937784|ref|YP_006401522.1| - 0.00022 20.9 0.1 0.00053 19.7 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|390937784|ref|YP_006401522.1| - 0.0012 18.3 0.2 0.018 14.4 0.1 2.6 3 1 0 3 3 2 1 AAA domain AAA_17 PF13207.1 gi|390937784|ref|YP_006401522.1| - 0.002 18.9 0.3 0.002 18.9 0.2 2.7 3 2 0 3 3 2 1 AAA domain AAA_10 PF12846.2 gi|390937784|ref|YP_006401522.1| - 0.005 16.3 0.5 0.021 14.3 0.1 2.1 2 1 0 2 2 2 1 AAA-like domain APS_kinase PF01583.15 gi|390937784|ref|YP_006401522.1| - 0.0059 16.2 0.0 0.02 14.5 0.0 1.9 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.1 gi|390937784|ref|YP_006401522.1| - 0.0076 15.8 0.2 0.024 14.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|390937784|ref|YP_006401522.1| - 0.0095 14.7 0.0 0.022 13.5 0.0 1.6 1 1 0 1 1 1 1 ArgK protein AAA_16 PF13191.1 gi|390937784|ref|YP_006401522.1| - 0.01 15.8 0.0 0.027 14.4 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.22 gi|390937784|ref|YP_006401522.1| - 0.012 15.0 0.7 0.033 13.6 0.4 1.7 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain 6PF2K PF01591.13 gi|390937784|ref|YP_006401522.1| - 0.013 14.5 0.0 0.027 13.5 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_19 PF13245.1 gi|390937784|ref|YP_006401522.1| - 0.019 14.7 0.0 0.056 13.1 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain KaiC PF06745.8 gi|390937784|ref|YP_006401522.1| - 0.04 13.0 0.4 0.14 11.2 0.3 1.9 1 1 0 1 1 1 0 KaiC Clp_N PF02861.15 gi|390937784|ref|YP_006401522.1| - 0.054 13.4 0.3 12 5.8 0.0 2.8 2 0 0 2 2 2 0 Clp amino terminal domain AAA_31 PF13614.1 gi|390937784|ref|YP_006401522.1| - 0.065 13.1 0.1 1.2 8.9 0.0 2.5 1 1 1 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|390937784|ref|YP_006401522.1| - 0.068 12.6 0.3 7.4 6.0 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|390937784|ref|YP_006401522.1| - 0.073 12.6 0.0 0.26 10.7 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|390937784|ref|YP_006401522.1| - 0.075 13.3 3.6 0.084 13.1 0.6 2.5 2 1 0 2 2 1 0 AAA domain ABC_tran PF00005.22 gi|390937784|ref|YP_006401522.1| - 0.077 13.2 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Thymidylate_kin PF02223.12 gi|390937784|ref|YP_006401522.1| - 0.079 12.3 0.1 0.43 9.9 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase MipZ PF09140.6 gi|390937784|ref|YP_006401522.1| - 0.079 12.0 0.1 2.6 7.0 0.1 2.3 1 1 0 1 1 1 0 ATPase MipZ AAA_5 PF07728.9 gi|390937784|ref|YP_006401522.1| - 0.11 12.2 0.1 0.5 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|390937784|ref|YP_006401522.1| - 0.13 12.4 0.9 0.96 9.6 0.6 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Ribosomal_L16 PF00252.13 gi|390937785|ref|YP_006401523.1| - 7.3e-33 113.1 0.1 8.5e-33 112.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Urease_beta PF00699.15 gi|390937785|ref|YP_006401523.1| - 0.06 13.1 0.0 0.1 12.4 0.0 1.5 1 1 0 1 1 1 0 Urease beta subunit Diphthamide_syn PF01866.12 gi|390937786|ref|YP_006401524.1| - 1.4e-54 185.4 0.0 1.7e-54 185.1 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Methyltransf_26 PF13659.1 gi|390937787|ref|YP_006401525.1| - 8e-07 29.0 0.0 1.2e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|390937787|ref|YP_006401525.1| - 7.7e-05 22.3 0.0 9.5e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|390937787|ref|YP_006401525.1| - 0.00011 21.6 0.0 0.00014 21.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|390937787|ref|YP_006401525.1| - 0.00018 20.7 1.3 0.00028 20.1 0.6 1.5 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|390937787|ref|YP_006401525.1| - 0.0073 16.6 0.0 0.012 15.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|390937787|ref|YP_006401525.1| - 0.0091 15.5 0.2 0.018 14.6 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|390937787|ref|YP_006401525.1| - 0.052 12.5 0.1 0.07 12.0 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF43 FAE1_CUT1_RppA PF08392.7 gi|390937787|ref|YP_006401525.1| - 0.062 12.3 0.0 0.091 11.8 0.0 1.2 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein Methyltransf_18 PF12847.2 gi|390937787|ref|YP_006401525.1| - 0.073 13.6 1.1 0.43 11.1 0.8 2.2 1 1 0 1 1 1 0 Methyltransferase domain Prok-RING_1 PF14446.1 gi|390937788|ref|YP_006401526.1| - 0.00028 20.5 0.9 0.00045 19.8 0.6 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 S1 PF00575.18 gi|390937788|ref|YP_006401526.1| - 0.00051 20.0 0.1 0.0019 18.2 0.1 1.9 1 1 0 1 1 1 1 S1 RNA binding domain EXOSC1 PF10447.4 gi|390937788|ref|YP_006401526.1| - 0.00081 19.2 0.1 0.13 12.2 0.1 2.7 1 1 1 2 2 2 1 Exosome component EXOSC1/CSL4 RRN7 PF11781.3 gi|390937788|ref|YP_006401526.1| - 0.0038 16.7 0.2 0.0071 15.8 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 ATPgrasp_TupA PF14305.1 gi|390937788|ref|YP_006401526.1| - 0.0074 15.6 0.1 0.0098 15.2 0.0 1.2 1 0 0 1 1 1 1 TupA-like ATPgrasp Auto_anti-p27 PF06677.7 gi|390937788|ref|YP_006401526.1| - 0.0075 16.0 0.7 0.012 15.3 0.5 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Baculo_ME53 PF06061.6 gi|390937788|ref|YP_006401526.1| - 0.0078 15.2 0.1 0.0078 15.2 0.0 1.2 1 0 0 1 1 1 1 Baculoviridae ME53 DZR PF12773.2 gi|390937788|ref|YP_006401526.1| - 0.011 15.5 0.4 0.017 14.9 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|390937788|ref|YP_006401526.1| - 0.015 14.9 2.3 0.025 14.2 1.6 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.5 gi|390937788|ref|YP_006401526.1| - 0.017 14.6 2.5 0.032 13.6 1.7 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF2318 PF10080.4 gi|390937788|ref|YP_006401526.1| - 0.023 14.4 0.2 0.041 13.6 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) ECR1_N PF14382.1 gi|390937788|ref|YP_006401526.1| - 0.036 13.3 0.0 0.094 12.0 0.0 1.8 1 0 0 1 1 1 0 Exosome complex exonuclease RRP4 N-terminal region OrfB_Zn_ribbon PF07282.6 gi|390937788|ref|YP_006401526.1| - 0.051 13.2 1.3 0.099 12.3 0.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|390937788|ref|YP_006401526.1| - 0.056 12.9 1.2 0.16 11.4 0.9 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.1 gi|390937788|ref|YP_006401526.1| - 0.092 12.4 4.9 2.3 7.9 3.4 2.3 1 1 0 1 1 1 0 Nudix N-terminal HypA PF01155.14 gi|390937788|ref|YP_006401526.1| - 0.23 11.1 1.4 0.36 10.5 1.0 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|390937788|ref|YP_006401526.1| - 1.7 7.9 4.4 1.7 7.9 0.2 2.1 1 1 2 3 3 3 0 zinc-ribbon domain DUF2067 PF09840.4 gi|390937789|ref|YP_006401527.1| - 7.7e-23 80.9 0.1 1e-22 80.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) RNA_pol_L_2 PF13656.1 gi|390937790|ref|YP_006401528.1| - 3.2e-23 80.9 0.0 3.7e-23 80.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|390937790|ref|YP_006401528.1| - 5.6e-06 25.3 0.0 6.8e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.13 gi|390937792|ref|YP_006401530.1| - 9.9e-20 69.8 4.5 9.9e-20 69.8 3.1 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|390937792|ref|YP_006401530.1| - 3.4e-08 33.0 6.8 0.00037 20.1 0.1 2.8 2 1 1 3 3 3 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|390937792|ref|YP_006401530.1| - 9.1e-07 28.5 8.1 0.0014 18.4 1.0 2.5 2 1 0 2 2 2 2 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|390937792|ref|YP_006401530.1| - 1e-06 28.3 4.7 6.5e-05 22.5 0.2 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|390937792|ref|YP_006401530.1| - 3.1e-06 26.9 1.6 0.054 13.4 0.3 2.4 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|390937792|ref|YP_006401530.1| - 1.6e-05 24.3 7.5 0.24 11.0 0.1 4.1 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|390937792|ref|YP_006401530.1| - 1.7e-05 24.1 12.4 1 8.9 0.0 4.2 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|390937792|ref|YP_006401530.1| - 2.5e-05 23.8 8.1 0.22 11.2 0.1 4.1 4 0 0 4 4 4 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|390937792|ref|YP_006401530.1| - 2.7e-05 23.4 7.9 0.2 11.0 2.3 4.1 3 1 0 3 3 3 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|390937792|ref|YP_006401530.1| - 5.4e-05 22.2 14.4 0.15 11.3 0.1 4.1 3 1 1 4 4 4 3 zinc-ribbon domain DZR PF12773.2 gi|390937792|ref|YP_006401530.1| - 0.00021 21.0 7.5 0.12 12.2 0.5 3.2 1 1 0 2 2 2 2 Double zinc ribbon IBR PF01485.16 gi|390937792|ref|YP_006401530.1| - 0.0007 19.4 3.6 0.28 11.0 0.9 3.1 2 1 0 2 2 2 1 IBR domain Zn-ribbon_8 PF09723.5 gi|390937792|ref|YP_006401530.1| - 0.0036 17.2 12.2 3.7 7.5 0.0 4.2 3 1 0 4 4 4 0 Zinc ribbon domain YhfH PF14149.1 gi|390937792|ref|YP_006401530.1| - 0.0062 16.2 4.8 25 4.7 0.1 4.2 4 0 0 4 4 4 0 YhfH-like protein zf-TFIIB PF13453.1 gi|390937792|ref|YP_006401530.1| - 0.0083 15.2 0.8 0.0083 15.2 0.5 2.9 2 1 0 2 2 2 1 Transcription factor zinc-finger zf-C4_Topoisom PF01396.14 gi|390937792|ref|YP_006401530.1| - 0.013 14.9 11.8 0.021 14.3 0.8 3.0 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Rubredoxin PF00301.15 gi|390937792|ref|YP_006401530.1| - 0.021 14.6 10.8 3 7.7 0.0 4.2 4 0 0 4 4 4 0 Rubredoxin RRN7 PF11781.3 gi|390937792|ref|YP_006401530.1| - 0.026 14.0 0.3 0.026 14.0 0.2 3.2 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-DNA_Pol PF08996.5 gi|390937792|ref|YP_006401530.1| - 0.027 13.8 1.1 0.18 11.1 0.0 2.1 2 0 0 2 2 2 0 DNA Polymerase alpha zinc finger FdhE PF04216.7 gi|390937792|ref|YP_006401530.1| - 0.039 13.6 6.6 0.35 10.5 0.5 2.1 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation HypA PF01155.14 gi|390937792|ref|YP_006401530.1| - 0.094 12.4 5.8 0.16 11.6 0.1 2.9 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|390937792|ref|YP_006401530.1| - 0.1 12.9 11.2 7 7.0 1.9 3.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|390937792|ref|YP_006401530.1| - 0.12 12.1 11.2 0.65 9.7 1.8 3.7 3 1 0 3 3 3 0 Nudix N-terminal PolC_DP2 PF03833.8 gi|390937792|ref|YP_006401530.1| - 0.13 9.9 2.5 0.38 8.3 0.1 1.9 1 1 0 2 2 2 0 DNA polymerase II large subunit DP2 DUF2082 PF09855.4 gi|390937792|ref|YP_006401530.1| - 0.14 12.0 11.9 4.4 7.2 0.0 4.0 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ISL3 PF14690.1 gi|390937792|ref|YP_006401530.1| - 0.22 11.6 13.1 4.4 7.4 0.1 4.0 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.7 gi|390937792|ref|YP_006401530.1| - 0.23 11.2 6.2 4.7 7.0 0.3 3.5 3 1 0 3 3 3 0 PhnA Zinc-Ribbon SIR2 PF02146.12 gi|390937792|ref|YP_006401530.1| - 0.35 10.5 2.2 3.3 7.3 0.0 2.6 1 1 2 3 3 3 0 Sir2 family zf-ZPR1 PF03367.8 gi|390937792|ref|YP_006401530.1| - 0.36 9.9 5.2 9.9 5.2 0.0 3.4 4 0 0 4 4 4 0 ZPR1 zinc-finger domain Ogr_Delta PF04606.7 gi|390937792|ref|YP_006401530.1| - 0.44 10.2 10.5 8.6 6.1 1.7 4.0 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger DNA_RNApol_7kD PF03604.8 gi|390937792|ref|YP_006401530.1| - 0.55 9.7 12.2 11 5.5 0.2 3.8 3 1 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit DUF2296 PF10058.4 gi|390937792|ref|YP_006401530.1| - 0.64 9.8 9.9 0.1 12.3 0.4 3.1 2 2 1 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Rdx PF10262.4 gi|390937792|ref|YP_006401530.1| - 0.87 9.6 5.5 3.6 7.6 0.1 3.1 3 0 0 3 3 3 0 Rdx family Terminase_GpA PF05876.7 gi|390937792|ref|YP_006401530.1| - 0.92 7.7 5.0 0.37 9.0 1.3 1.8 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) RNHCP PF12647.2 gi|390937792|ref|YP_006401530.1| - 0.97 9.3 4.3 29 4.5 0.4 3.6 3 1 1 4 4 4 0 RNHCP domain zf-RING_3 PF14369.1 gi|390937792|ref|YP_006401530.1| - 1.2 9.1 6.1 15 5.7 0.0 3.5 4 0 0 4 4 4 0 zinc-finger Baculo_LEF5_C PF11792.3 gi|390937792|ref|YP_006401530.1| - 1.3 8.4 7.6 0.3 10.5 0.2 3.0 3 1 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain TerY-C PF15616.1 gi|390937792|ref|YP_006401530.1| - 1.8 8.5 5.5 8.5 6.3 0.2 2.6 3 1 0 3 3 2 0 TerY-C metal binding domain zf-H2C2_2 PF13465.1 gi|390937792|ref|YP_006401530.1| - 1.8 8.9 14.1 2.5 8.5 0.6 4.0 4 0 0 4 4 4 0 Zinc-finger double domain zf-Mss51 PF13824.1 gi|390937792|ref|YP_006401530.1| - 2.1 8.2 11.7 1.2 9.0 0.1 3.4 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_L44 PF00935.14 gi|390937792|ref|YP_006401530.1| - 2.5 8.1 4.8 19 5.3 0.2 3.0 3 0 0 3 3 3 0 Ribosomal protein L44 Zn_Tnp_IS91 PF14319.1 gi|390937792|ref|YP_006401530.1| - 3.5 7.1 8.4 1.9 8.0 0.3 3.1 2 2 1 3 3 3 0 Transposase zinc-binding domain DUF1272 PF06906.6 gi|390937792|ref|YP_006401530.1| - 3.6 7.4 10.9 1.2 9.0 0.2 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF1272) zf-C2H2_4 PF13894.1 gi|390937792|ref|YP_006401530.1| - 4 7.9 8.1 1.5e+02 3.0 0.3 4.0 4 0 0 4 4 4 0 C2H2-type zinc finger UPF0547 PF10571.4 gi|390937792|ref|YP_006401530.1| - 4.7 7.0 16.8 11 5.8 0.2 4.1 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|390937792|ref|YP_006401530.1| - 6.6 6.2 11.7 30 4.1 0.1 4.0 4 0 0 4 4 4 0 HypF finger C1_1 PF00130.17 gi|390937792|ref|YP_006401530.1| - 6.7 6.5 7.6 3 7.6 0.1 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-NADH-PPase PF09297.6 gi|390937792|ref|YP_006401530.1| - 7.1 6.2 13.9 8.4 5.9 3.0 3.9 3 1 1 4 4 4 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.1 gi|390937792|ref|YP_006401530.1| - 9.7 5.6 16.1 15 4.9 0.1 4.0 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding PCNA_N PF00705.13 gi|390937793|ref|YP_006401531.1| - 1e-14 54.1 0.0 4.3e-14 52.1 0.0 1.9 2 1 1 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|390937793|ref|YP_006401531.1| - 1.1e-06 28.6 0.0 2.3e-06 27.5 0.0 1.6 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|390937793|ref|YP_006401531.1| - 5.1e-05 22.1 0.2 0.00024 19.9 0.1 1.9 1 1 1 2 2 2 1 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|390937793|ref|YP_006401531.1| - 0.017 14.2 0.0 0.039 13.0 0.0 1.6 1 1 0 1 1 1 0 Rad9 DUF3117 PF11314.3 gi|390937793|ref|YP_006401531.1| - 0.089 12.3 1.5 22 4.6 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3117) Antitoxin-MazE PF04014.13 gi|390937793|ref|YP_006401531.1| - 0.3 10.8 1.6 0.99 9.1 0.2 2.3 2 0 0 2 2 2 0 Antidote-toxin recognition MazE DNA_primase_S PF01896.14 gi|390937794|ref|YP_006401532.1| - 1.5e-14 54.0 1.1 1.1e-13 51.2 0.7 2.1 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit DUF515 PF04415.7 gi|390937796|ref|YP_006401534.1| - 0.014 13.6 0.5 0.014 13.6 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF515) MscS_TM PF12794.2 gi|390937796|ref|YP_006401534.1| - 0.14 10.6 9.0 0.29 9.7 6.2 1.4 1 1 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 EI24 PF07264.6 gi|390937796|ref|YP_006401534.1| - 0.22 10.9 9.1 0.75 9.1 3.5 2.0 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) SLAC1 PF03595.12 gi|390937796|ref|YP_006401534.1| - 0.74 8.3 11.4 1.7 7.2 7.9 1.5 1 1 0 1 1 1 0 Voltage-dependent anion channel DUF485 PF04341.7 gi|390937796|ref|YP_006401534.1| - 3.6 7.3 10.0 0.76 9.5 3.7 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF485 DUF4013 PF13197.1 gi|390937796|ref|YP_006401534.1| - 3.6 6.8 13.7 3.7 6.8 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) DUF3290 PF11694.3 gi|390937796|ref|YP_006401534.1| - 5.6 6.6 11.0 1.4 8.6 4.9 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3290) Nop10p PF04135.7 gi|390937797|ref|YP_006401535.1| - 1.1e-23 82.7 0.7 1.2e-23 82.5 0.5 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-CCHC_4 PF14392.1 gi|390937797|ref|YP_006401535.1| - 0.0039 16.8 0.2 0.0064 16.1 0.1 1.4 1 0 0 1 1 1 1 Zinc knuckle DUF1272 PF06906.6 gi|390937797|ref|YP_006401535.1| - 0.023 14.5 1.2 0.03 14.1 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DUF35_N PF12172.3 gi|390937797|ref|YP_006401535.1| - 0.044 13.7 1.5 0.044 13.7 1.1 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RecR PF02132.10 gi|390937797|ref|YP_006401535.1| - 0.051 13.0 1.1 0.072 12.5 0.3 1.5 2 0 0 2 2 2 0 RecR protein A2L_zn_ribbon PF08792.5 gi|390937797|ref|YP_006401535.1| - 0.074 12.5 1.7 6.9 6.2 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|390937797|ref|YP_006401535.1| - 0.16 11.6 1.5 0.21 11.3 1.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 gi|390937797|ref|YP_006401535.1| - 0.16 11.1 4.5 0.39 9.9 3.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|390937797|ref|YP_006401535.1| - 0.72 9.4 5.0 5.6 6.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.1 gi|390937797|ref|YP_006401535.1| - 4.7 6.6 8.3 20 4.6 5.7 1.8 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding EIF_2_alpha PF07541.7 gi|390937798|ref|YP_006401536.1| - 6.4e-25 87.0 1.2 1.5e-24 85.8 0.0 2.1 3 0 0 3 3 3 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|390937798|ref|YP_006401536.1| - 1.3e-12 47.5 1.1 2.5e-12 46.7 0.1 1.9 2 0 0 2 2 2 1 S1 RNA binding domain DUF1464 PF07318.7 gi|390937798|ref|YP_006401536.1| - 0.034 12.9 0.8 0.47 9.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1464) Cdc6_C PF09079.6 gi|390937801|ref|YP_006401539.1| - 6.9e-20 70.5 0.2 1.7e-19 69.3 0.2 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|390937801|ref|YP_006401539.1| - 1.6e-13 50.9 0.0 3.4e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|390937801|ref|YP_006401539.1| - 6.9e-10 39.2 0.0 4.5e-09 36.5 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|390937801|ref|YP_006401539.1| - 7.7e-08 32.3 2.3 1.7e-07 31.1 0.2 2.3 2 1 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|390937801|ref|YP_006401539.1| - 3e-05 23.7 0.0 6.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|390937801|ref|YP_006401539.1| - 5.3e-05 24.0 0.9 0.00073 20.3 0.1 2.3 1 1 1 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|390937801|ref|YP_006401539.1| - 0.00014 20.8 0.0 0.00027 19.9 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.24 gi|390937801|ref|YP_006401539.1| - 0.0011 19.1 0.0 0.0026 17.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|390937801|ref|YP_006401539.1| - 0.0014 18.2 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|390937801|ref|YP_006401539.1| - 0.0017 18.6 0.0 0.0051 17.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|390937801|ref|YP_006401539.1| - 0.0037 17.5 0.0 0.01 16.0 0.0 1.7 1 0 0 1 1 1 1 ABC transporter MobB PF03205.9 gi|390937801|ref|YP_006401539.1| - 0.0052 16.4 0.1 0.02 14.6 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|390937801|ref|YP_006401539.1| - 0.007 15.8 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family KaiC PF06745.8 gi|390937801|ref|YP_006401539.1| - 0.013 14.6 0.2 0.058 12.4 0.0 2.0 2 0 0 2 2 2 0 KaiC PduV-EutP PF10662.4 gi|390937801|ref|YP_006401539.1| - 0.015 14.7 0.1 0.044 13.2 0.0 1.8 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation UPF0079 PF02367.12 gi|390937801|ref|YP_006401539.1| - 0.016 14.8 0.0 0.031 13.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|390937801|ref|YP_006401539.1| - 0.019 14.8 0.1 0.054 13.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|390937801|ref|YP_006401539.1| - 0.028 13.8 0.0 0.59 9.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|390937801|ref|YP_006401539.1| - 0.031 14.0 0.0 0.58 9.9 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|390937801|ref|YP_006401539.1| - 0.042 13.4 0.1 1 8.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein Miro PF08477.8 gi|390937801|ref|YP_006401539.1| - 0.053 14.0 0.2 0.18 12.3 0.0 2.2 2 1 0 2 2 1 0 Miro-like protein AAA_5 PF07728.9 gi|390937801|ref|YP_006401539.1| - 0.057 13.1 0.2 0.22 11.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|390937801|ref|YP_006401539.1| - 0.058 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ocnus PF05005.10 gi|390937801|ref|YP_006401539.1| - 0.062 13.1 0.0 0.21 11.4 0.0 1.8 1 1 0 1 1 1 0 Janus/Ocnus family (Ocnus) AAA_30 PF13604.1 gi|390937801|ref|YP_006401539.1| - 0.078 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|390937801|ref|YP_006401539.1| - 0.091 11.3 0.1 0.2 10.2 0.1 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|390937801|ref|YP_006401539.1| - 0.17 11.2 1.6 1.7 8.0 0.0 2.5 3 0 0 3 3 3 0 AAA-like domain MMR_HSR1 PF01926.18 gi|390937801|ref|YP_006401539.1| - 0.31 11.0 1.4 0.55 10.1 0.1 2.2 2 2 0 2 2 2 0 50S ribosome-binding GTPase ASCH PF04266.9 gi|390937802|ref|YP_006401540.1| - 1.5e-14 54.2 0.2 2.5e-14 53.5 0.1 1.4 1 0 0 1 1 1 1 ASCH domain DUF3600 PF12207.3 gi|390937802|ref|YP_006401540.1| - 0.076 12.5 0.1 0.14 11.6 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3600) PCI PF01399.22 gi|390937802|ref|YP_006401540.1| - 0.095 13.0 0.1 0.17 12.1 0.0 1.6 1 1 0 1 1 1 0 PCI domain HTH_5 PF01022.15 gi|390937803|ref|YP_006401541.1| - 2.5e-11 43.0 0.0 3.8e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|390937803|ref|YP_006401541.1| - 1.4e-05 24.8 0.0 2.1e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|390937803|ref|YP_006401541.1| - 0.00081 19.1 0.2 0.0013 18.5 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|390937803|ref|YP_006401541.1| - 0.0047 16.5 0.9 0.081 12.6 0.1 2.2 1 1 1 2 2 2 1 Winged helix DNA-binding domain (DUF1495) TrmB PF01978.14 gi|390937803|ref|YP_006401541.1| - 0.028 14.0 0.1 0.047 13.3 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|390937803|ref|YP_006401541.1| - 0.05 13.2 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family Arg_repressor PF01316.16 gi|390937803|ref|YP_006401541.1| - 0.086 12.4 0.1 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain MarR PF01047.17 gi|390937803|ref|YP_006401541.1| - 0.12 12.1 0.1 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 MarR family Fer4_6 PF12837.2 gi|390937804|ref|YP_006401542.1| - 4.8e-11 42.0 13.0 1.9e-05 24.3 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|390937804|ref|YP_006401542.1| - 1.9e-10 39.8 15.5 7.7e-08 31.6 1.3 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|390937804|ref|YP_006401542.1| - 2e-09 36.8 12.4 2.4e-06 27.0 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|390937804|ref|YP_006401542.1| - 2.2e-08 33.7 10.2 5.6e-08 32.4 7.3 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|390937804|ref|YP_006401542.1| - 9.6e-08 32.1 11.3 1.2e-07 31.9 7.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|390937804|ref|YP_006401542.1| - 1.2e-06 28.8 11.3 2.3e-06 27.8 7.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|390937804|ref|YP_006401542.1| - 2.6e-06 27.2 12.6 0.00039 20.5 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|390937804|ref|YP_006401542.1| - 4e-06 26.5 9.3 8.5e-06 25.5 6.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|390937804|ref|YP_006401542.1| - 0.00024 21.3 6.0 0.029 14.7 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|390937804|ref|YP_006401542.1| - 0.0043 17.4 9.8 0.028 14.8 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|390937804|ref|YP_006401542.1| - 0.0054 16.7 12.7 0.071 13.1 8.9 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|390937804|ref|YP_006401542.1| - 0.0097 16.2 10.2 0.092 13.1 7.1 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|390937804|ref|YP_006401542.1| - 0.011 16.4 11.4 0.59 10.9 1.9 2.2 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|390937804|ref|YP_006401542.1| - 0.02 15.4 17.0 0.2 12.3 3.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|390937804|ref|YP_006401542.1| - 0.022 15.2 8.6 0.11 13.0 6.0 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|390937804|ref|YP_006401542.1| - 0.13 12.1 2.1 0.17 11.7 1.4 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster DUF3079 PF11278.3 gi|390937804|ref|YP_006401542.1| - 0.28 10.7 8.3 0.089 12.3 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3079) ABC_tran PF00005.22 gi|390937806|ref|YP_006401544.1| - 3.6e-30 105.0 0.0 5e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390937806|ref|YP_006401544.1| - 2.2e-14 54.0 1.0 3.2e-06 27.3 0.4 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|390937806|ref|YP_006401544.1| - 2.4e-05 23.5 0.0 0.12 11.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|390937806|ref|YP_006401544.1| - 7.8e-05 22.1 0.0 0.00016 21.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|390937806|ref|YP_006401544.1| - 0.00011 22.1 0.2 0.0099 15.7 0.0 2.7 1 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|390937806|ref|YP_006401544.1| - 0.00014 22.3 0.0 0.00028 21.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|390937806|ref|YP_006401544.1| - 0.00018 22.2 0.1 0.00048 20.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|390937806|ref|YP_006401544.1| - 0.00021 21.3 0.1 0.00045 20.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|390937806|ref|YP_006401544.1| - 0.00032 20.8 0.7 0.039 14.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|390937806|ref|YP_006401544.1| - 0.00086 18.0 0.1 0.1 11.1 0.0 2.3 2 1 0 2 2 2 1 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|390937806|ref|YP_006401544.1| - 0.001 18.2 0.0 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SMC_N PF02463.14 gi|390937806|ref|YP_006401544.1| - 0.0013 17.9 0.5 0.013 14.7 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|390937806|ref|YP_006401544.1| - 0.0017 18.0 0.2 0.0037 16.9 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|390937806|ref|YP_006401544.1| - 0.0037 16.9 0.0 0.006 16.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|390937806|ref|YP_006401544.1| - 0.0057 16.5 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|390937806|ref|YP_006401544.1| - 0.0096 15.5 0.0 0.023 14.3 0.0 1.5 2 0 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|390937806|ref|YP_006401544.1| - 0.01 15.5 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|390937806|ref|YP_006401544.1| - 0.015 15.0 0.1 0.038 13.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|390937806|ref|YP_006401544.1| - 0.016 14.5 0.0 0.042 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|390937806|ref|YP_006401544.1| - 0.021 14.3 0.0 0.04 13.4 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase NB-ARC PF00931.17 gi|390937806|ref|YP_006401544.1| - 0.026 13.4 0.0 0.042 12.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.24 gi|390937806|ref|YP_006401544.1| - 0.027 14.6 0.3 0.14 12.3 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|390937806|ref|YP_006401544.1| - 0.03 13.7 0.4 0.092 12.1 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|390937806|ref|YP_006401544.1| - 0.032 13.6 0.2 0.061 12.7 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.12 gi|390937806|ref|YP_006401544.1| - 0.039 13.5 0.0 0.073 12.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.1 gi|390937806|ref|YP_006401544.1| - 0.047 13.2 0.1 0.078 12.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|390937806|ref|YP_006401544.1| - 0.057 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA12 PF10443.4 gi|390937806|ref|YP_006401544.1| - 0.058 11.8 0.0 0.079 11.4 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein T2SE PF00437.15 gi|390937806|ref|YP_006401544.1| - 0.062 12.1 0.1 0.13 11.1 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|390937806|ref|YP_006401544.1| - 0.075 12.2 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DLIC PF05783.6 gi|390937806|ref|YP_006401544.1| - 0.093 11.3 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) SRP54 PF00448.17 gi|390937806|ref|YP_006401544.1| - 0.12 11.7 0.2 0.21 11.0 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|390937806|ref|YP_006401544.1| - 0.12 12.0 0.1 1.2 8.8 0.0 2.4 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|390937806|ref|YP_006401544.1| - 0.14 11.2 0.0 0.27 10.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin FecCD PF01032.13 gi|390937807|ref|YP_006401545.1| - 3.3e-77 259.3 37.0 4.1e-77 259.0 25.6 1.0 1 0 0 1 1 1 1 FecCD transport family Benyvirus_P25 PF05744.6 gi|390937807|ref|YP_006401545.1| - 0.0049 16.2 0.1 0.007 15.7 0.1 1.2 1 0 0 1 1 1 1 Benyvirus P25/P26 protein Peripla_BP_2 PF01497.13 gi|390937808|ref|YP_006401546.1| - 1e-19 70.6 0.0 1.4e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein InaF-motif PF15018.1 gi|390937808|ref|YP_006401546.1| - 0.029 13.8 0.8 0.07 12.5 0.6 1.6 1 0 0 1 1 1 0 TRP-interacting helix AJAP1_PANP_C PF15298.1 gi|390937808|ref|YP_006401546.1| - 0.21 11.4 0.3 0.36 10.6 0.2 1.3 1 0 0 1 1 1 0 AJAP1/PANP C-terminus FmdE PF02663.9 gi|390937809|ref|YP_006401547.1| - 8.7e-38 129.1 0.0 1.2e-37 128.7 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|390937809|ref|YP_006401547.1| - 6.4e-09 35.3 1.1 1.2e-08 34.5 0.8 1.4 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Hexapep PF00132.19 gi|390937809|ref|YP_006401547.1| - 0.011 15.2 0.2 0.026 14.0 0.2 1.6 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|390937809|ref|YP_006401547.1| - 0.096 12.2 0.7 0.25 10.9 0.5 1.7 1 0 0 1 1 1 0 Hexapeptide repeat of succinyl-transferase zinc_ribbon_5 PF13719.1 gi|390937809|ref|YP_006401547.1| - 0.26 10.8 1.3 0.34 10.5 0.0 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Peptidase_S24 PF00717.18 gi|390937810|ref|YP_006401548.1| - 8.1e-11 41.4 0.5 1.5e-10 40.5 0.3 1.5 1 1 0 1 1 1 1 Peptidase S24-like Zn-ribbon_8 PF09723.5 gi|390937811|ref|YP_006401549.1| - 0.0013 18.5 1.1 0.023 14.6 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|390937811|ref|YP_006401549.1| - 0.002 18.3 0.1 0.0028 17.8 0.0 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar HypA PF01155.14 gi|390937811|ref|YP_006401549.1| - 0.0026 17.4 0.3 0.46 10.1 0.0 2.2 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|390937811|ref|YP_006401549.1| - 0.0027 17.6 0.8 0.0057 16.6 0.6 1.6 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.1 gi|390937811|ref|YP_006401549.1| - 0.0029 16.7 3.2 0.019 14.1 2.2 2.1 1 1 0 1 1 1 1 zinc-ribbon domain TFIIS_C PF01096.13 gi|390937811|ref|YP_006401549.1| - 0.003 17.1 4.6 0.78 9.4 0.1 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.8 gi|390937811|ref|YP_006401549.1| - 0.0036 16.7 1.6 0.4 10.1 0.2 2.3 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|390937811|ref|YP_006401549.1| - 0.013 15.1 4.8 0.38 10.4 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|390937811|ref|YP_006401549.1| - 0.023 14.2 6.3 0.26 10.9 0.1 2.6 3 0 0 3 3 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|390937811|ref|YP_006401549.1| - 0.025 14.8 1.5 1.1 9.5 0.3 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain DUF2082 PF09855.4 gi|390937811|ref|YP_006401549.1| - 0.029 14.2 3.2 0.21 11.4 2.2 2.0 1 1 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Elf1 PF05129.8 gi|390937811|ref|YP_006401549.1| - 0.031 13.9 0.1 0.056 13.1 0.1 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like YokU PF14122.1 gi|390937811|ref|YP_006401549.1| - 0.037 13.7 0.3 0.069 12.8 0.2 1.6 1 1 0 1 1 1 0 YokU-like protein UPF0547 PF10571.4 gi|390937811|ref|YP_006401549.1| - 0.049 13.3 2.4 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 GcpE PF04551.9 gi|390937811|ref|YP_006401549.1| - 0.057 12.2 0.4 0.069 11.9 0.3 1.1 1 0 0 1 1 1 0 GcpE protein zinc_ribbon_2 PF13240.1 gi|390937811|ref|YP_006401549.1| - 0.06 12.8 3.9 0.72 9.4 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ZPR1 PF03367.8 gi|390937811|ref|YP_006401549.1| - 0.067 12.3 1.2 0.51 9.4 0.9 2.1 1 1 0 1 1 1 0 ZPR1 zinc-finger domain Mu-like_Com PF10122.4 gi|390937811|ref|YP_006401549.1| - 0.21 10.6 2.9 3.7 6.6 0.1 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com DUF35_N PF12172.3 gi|390937811|ref|YP_006401549.1| - 0.22 11.4 1.4 1.6 8.7 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ISL3 PF14690.1 gi|390937811|ref|YP_006401549.1| - 0.23 11.4 4.8 0.77 9.8 0.0 2.4 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF4379 PF14311.1 gi|390937811|ref|YP_006401549.1| - 0.24 11.2 2.3 0.63 9.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) RNA_POL_M_15KD PF02150.11 gi|390937811|ref|YP_006401549.1| - 0.28 10.8 2.6 2.9 7.6 0.0 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|390937811|ref|YP_006401549.1| - 0.39 10.0 0.1 0.39 10.0 0.1 2.6 3 0 0 3 3 3 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|390937811|ref|YP_006401549.1| - 0.56 10.0 4.8 5.8 6.8 3.4 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-tcix PF14952.1 gi|390937811|ref|YP_006401549.1| - 0.56 9.5 5.6 2.3 7.6 0.4 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Ribosomal_L37ae PF01780.14 gi|390937811|ref|YP_006401549.1| - 0.91 9.4 3.5 8.1 6.3 0.5 2.1 1 1 0 2 2 2 0 Ribosomal L37ae protein family Presenilin PF01080.12 gi|390937812|ref|YP_006401550.1| - 1.2 7.9 5.7 1.3 7.7 4.0 1.0 1 0 0 1 1 1 0 Presenilin Enolase_C PF00113.17 gi|390937813|ref|YP_006401551.1| - 2.3e-115 384.6 0.0 3.1e-115 384.2 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|390937813|ref|YP_006401551.1| - 1.9e-54 183.1 0.4 3.7e-54 182.2 0.2 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|390937813|ref|YP_006401551.1| - 0.00041 19.3 0.0 0.00069 18.6 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|390937813|ref|YP_006401551.1| - 0.00055 20.4 0.0 0.0012 19.3 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MpPF26 PF07666.6 gi|390937814|ref|YP_006401552.1| - 0.098 12.5 9.1 0.12 12.2 6.3 1.2 1 0 0 1 1 1 0 M penetrans paralogue family 26 DUF2985 PF11204.3 gi|390937814|ref|YP_006401552.1| - 0.24 11.2 0.1 0.24 11.2 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2985) TauE PF01925.14 gi|390937814|ref|YP_006401552.1| - 0.47 9.8 12.5 0.6 9.5 8.6 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE DUF2244 PF10003.4 gi|390937814|ref|YP_006401552.1| - 0.93 8.8 7.7 0.18 11.1 2.2 1.8 1 1 1 2 2 2 0 Integral membrane protein (DUF2244) zf-DHHC PF01529.15 gi|390937814|ref|YP_006401552.1| - 1.9 7.8 4.6 1.9 7.8 3.2 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF2721 PF11026.3 gi|390937814|ref|YP_006401552.1| - 2.7 7.6 6.8 4.6 6.8 4.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) Bac_export_3 PF01313.14 gi|390937814|ref|YP_006401552.1| - 3.1 7.5 10.3 4.1 7.1 7.2 1.2 1 0 0 1 1 1 0 Bacterial export proteins, family 3 Herpes_LMP1 PF05297.6 gi|390937814|ref|YP_006401552.1| - 8.5 5.1 6.1 8.7 5.1 4.2 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) AA_kinase PF00696.23 gi|390937815|ref|YP_006401553.1| - 2.6e-26 92.6 0.0 3.1e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF4505 PF14956.1 gi|390937815|ref|YP_006401553.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4505) DUF2029 PF09594.5 gi|390937816|ref|YP_006401554.1| - 1.4e-08 34.5 22.7 1.4e-08 34.5 15.7 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2029) Aldedh PF00171.17 gi|390937817|ref|YP_006401555.1| - 2.3e-120 402.0 0.0 2.6e-120 401.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|390937817|ref|YP_006401555.1| - 5.7e-06 25.2 0.0 1.3e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Rubrerythrin PF02915.12 gi|390937818|ref|YP_006401556.1| - 1e-30 106.8 2.9 1.2e-30 106.5 2.0 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|390937818|ref|YP_006401556.1| - 0.00014 21.6 1.2 0.00026 20.7 0.8 1.4 1 1 0 1 1 1 1 Ferritin-like domain zf-Sec23_Sec24 PF04810.10 gi|390937818|ref|YP_006401556.1| - 0.009 15.5 1.1 0.2 11.2 0.1 2.2 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger DUF3279 PF11682.3 gi|390937818|ref|YP_006401556.1| - 0.01 15.3 0.1 0.015 14.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) Rubredoxin PF00301.15 gi|390937818|ref|YP_006401556.1| - 0.013 15.3 5.0 0.16 11.8 2.2 2.6 2 1 0 2 2 2 0 Rubredoxin Cys_rich_CPCC PF14206.1 gi|390937818|ref|YP_006401556.1| - 0.031 13.8 2.3 0.064 12.8 1.6 1.5 1 0 0 1 1 1 0 Cysteine-rich CPCC TF_Zn_Ribbon PF08271.7 gi|390937818|ref|YP_006401556.1| - 0.042 13.1 3.7 0.31 10.4 2.7 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DUF3039 PF11238.3 gi|390937818|ref|YP_006401556.1| - 0.062 12.7 0.8 0.12 11.8 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) HypA PF01155.14 gi|390937818|ref|YP_006401556.1| - 0.071 12.8 0.3 0.17 11.6 0.2 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|390937818|ref|YP_006401556.1| - 0.086 12.6 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|390937818|ref|YP_006401556.1| - 0.088 12.8 3.0 4.8 7.2 0.1 2.8 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-MIZ PF02891.15 gi|390937818|ref|YP_006401556.1| - 0.17 11.4 2.8 0.53 9.8 0.0 2.3 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger zf-ribbon_3 PF13248.1 gi|390937818|ref|YP_006401556.1| - 0.19 11.0 2.3 9.6 5.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RRN7 PF11781.3 gi|390937818|ref|YP_006401556.1| - 0.19 11.2 3.6 2.4 7.7 0.3 2.4 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 PhnA_Zn_Ribbon PF08274.7 gi|390937818|ref|YP_006401556.1| - 0.25 11.1 2.3 0.47 10.2 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|390937818|ref|YP_006401556.1| - 0.46 10.0 3.4 1.3 8.6 2.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|390937818|ref|YP_006401556.1| - 0.62 10.0 3.4 5.8 6.9 2.4 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2H2_4 PF13894.1 gi|390937818|ref|YP_006401556.1| - 0.66 10.4 4.1 6.2 7.3 0.0 2.8 3 0 0 3 3 2 0 C2H2-type zinc finger UPF0547 PF10571.4 gi|390937818|ref|YP_006401556.1| - 0.71 9.6 4.3 5.5 6.7 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_ligase_ZBD PF03119.11 gi|390937818|ref|YP_006401556.1| - 1.1 9.0 5.9 3.4 7.4 0.6 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TP_methylase PF00590.15 gi|390937819|ref|YP_006401557.1| - 1.4e-19 70.6 0.0 1.7e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases ABC_tran PF00005.22 gi|390937820|ref|YP_006401558.1| - 1.6e-23 83.5 0.1 2e-23 83.1 0.1 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390937820|ref|YP_006401558.1| - 2.9e-18 66.8 1.2 2.3e-09 37.6 0.4 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|390937820|ref|YP_006401558.1| - 4.7e-08 32.4 0.9 0.00019 20.6 0.1 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|390937820|ref|YP_006401558.1| - 3.2e-07 29.7 0.0 0.0056 15.9 0.0 2.5 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|390937820|ref|YP_006401558.1| - 1.4e-05 25.5 0.0 1.8e-05 25.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|390937820|ref|YP_006401558.1| - 4.3e-05 23.5 0.0 6.7e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|390937820|ref|YP_006401558.1| - 0.00013 21.3 0.0 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|390937820|ref|YP_006401558.1| - 0.00015 20.5 0.0 0.00023 19.9 0.0 1.2 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_14 PF13173.1 gi|390937820|ref|YP_006401558.1| - 0.00096 19.0 0.1 0.055 13.3 0.0 2.4 1 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|390937820|ref|YP_006401558.1| - 0.0031 17.7 0.1 0.02 15.1 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|390937820|ref|YP_006401558.1| - 0.0045 17.3 0.1 0.023 15.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|390937820|ref|YP_006401558.1| - 0.0048 17.7 0.1 0.008 16.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|390937820|ref|YP_006401558.1| - 0.0092 15.9 0.1 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|390937820|ref|YP_006401558.1| - 0.0094 16.0 0.1 0.016 15.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|390937820|ref|YP_006401558.1| - 0.0098 15.3 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 MutS domain V DUF2813 PF11398.3 gi|390937820|ref|YP_006401558.1| - 0.01 14.9 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) UPF0079 PF02367.12 gi|390937820|ref|YP_006401558.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|390937820|ref|YP_006401558.1| - 0.012 15.4 0.0 0.026 14.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|390937820|ref|YP_006401558.1| - 0.017 14.8 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_PrkA PF08298.6 gi|390937820|ref|YP_006401558.1| - 0.023 13.4 0.0 0.032 12.9 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain Zeta_toxin PF06414.7 gi|390937820|ref|YP_006401558.1| - 0.026 13.6 0.0 0.048 12.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.1 gi|390937820|ref|YP_006401558.1| - 0.033 13.9 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|390937820|ref|YP_006401558.1| - 0.039 13.3 0.0 0.053 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|390937820|ref|YP_006401558.1| - 0.073 12.5 0.2 0.23 10.9 0.1 1.8 1 1 0 1 1 1 0 DEAD/DEAH box helicase Rad17 PF03215.10 gi|390937820|ref|YP_006401558.1| - 0.087 11.4 0.1 0.13 10.9 0.1 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MobB PF03205.9 gi|390937820|ref|YP_006401558.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF3584 PF12128.3 gi|390937820|ref|YP_006401558.1| - 0.18 9.0 0.1 0.24 8.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FecCD PF01032.13 gi|390937821|ref|YP_006401559.1| - 1.9e-59 201.0 30.8 2.3e-59 200.7 21.4 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|390937822|ref|YP_006401560.1| - 2.8e-19 69.1 0.0 4.1e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Isochorismatase PF00857.15 gi|390937824|ref|YP_006401562.1| - 4.4e-44 150.4 0.0 4.8e-44 150.3 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family AAA_25 PF13481.1 gi|390937824|ref|YP_006401562.1| - 0.025 13.9 0.0 0.044 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ELFV_dehydrog PF00208.16 gi|390937825|ref|YP_006401563.1| - 2.2e-74 250.1 0.1 2.8e-74 249.7 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|390937825|ref|YP_006401563.1| - 2.9e-46 156.2 0.0 5.1e-46 155.5 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|390937825|ref|YP_006401563.1| - 0.00012 21.2 0.1 0.00026 20.2 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.7 gi|390937825|ref|YP_006401563.1| - 0.0027 15.2 0.0 0.0037 14.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase AdoHcyase_NAD PF00670.16 gi|390937825|ref|YP_006401563.1| - 0.0033 17.2 0.5 0.041 13.7 0.1 2.2 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.1 gi|390937825|ref|YP_006401563.1| - 0.0035 17.5 0.1 0.0073 16.5 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding ThiF PF00899.16 gi|390937825|ref|YP_006401563.1| - 0.016 15.0 0.4 0.036 13.8 0.1 1.7 2 0 0 2 2 2 0 ThiF family AlaDh_PNT_C PF01262.16 gi|390937825|ref|YP_006401563.1| - 0.025 14.1 0.6 0.053 13.0 0.1 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|390937825|ref|YP_006401563.1| - 0.085 12.9 0.8 0.8 9.8 0.0 2.6 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase DUF504 PF04457.7 gi|390937826|ref|YP_006401564.1| - 1.9e-11 43.9 4.1 3.1e-11 43.2 2.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF504) DPM3 PF08285.6 gi|390937827|ref|YP_006401565.1| - 0.0091 15.8 2.8 0.01 15.6 1.9 1.1 1 0 0 1 1 1 1 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) PsbI PF02532.9 gi|390937827|ref|YP_006401565.1| - 0.031 13.8 5.5 0.031 13.8 3.8 2.0 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) DUF3139 PF11337.3 gi|390937827|ref|YP_006401565.1| - 0.041 14.1 3.5 2.1 8.7 1.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3139) DUF4131 PF13567.1 gi|390937827|ref|YP_006401565.1| - 0.044 13.1 0.9 0.048 13.0 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3278 PF11683.3 gi|390937827|ref|YP_006401565.1| - 0.3 11.0 3.2 0.31 11.0 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3278) DUF2393 PF09624.5 gi|390937827|ref|YP_006401565.1| - 1.4 8.4 5.6 2.6 7.5 1.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2393) DUF3671 PF12420.3 gi|390937827|ref|YP_006401565.1| - 6.8 6.7 7.4 8.3 6.4 5.1 1.1 1 0 0 1 1 1 0 Protein of unknown function polyprenyl_synt PF00348.12 gi|390937828|ref|YP_006401566.1| - 4.1e-46 156.9 0.0 9.8e-45 152.4 0.0 2.1 1 1 0 1 1 1 1 Polyprenyl synthetase GcpE PF04551.9 gi|390937828|ref|YP_006401566.1| - 0.11 11.2 0.0 0.19 10.4 0.0 1.3 1 0 0 1 1 1 0 GcpE protein OMPdecase PF00215.19 gi|390937829|ref|YP_006401567.1| - 3e-24 85.6 1.5 3.6e-24 85.4 1.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|390937829|ref|YP_006401567.1| - 2.7e-05 23.3 0.5 3.6e-05 22.9 0.4 1.5 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|390937829|ref|YP_006401567.1| - 2.7e-05 23.7 0.2 5.9e-05 22.6 0.1 1.7 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.16 gi|390937829|ref|YP_006401567.1| - 0.00089 18.5 0.5 0.0017 17.6 0.2 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.9 gi|390937829|ref|YP_006401567.1| - 0.0011 17.9 0.2 0.002 17.1 0.1 1.4 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase PEP_mutase PF13714.1 gi|390937829|ref|YP_006401567.1| - 0.0019 17.4 0.3 0.11 11.7 0.0 2.2 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase PcrB PF01884.12 gi|390937829|ref|YP_006401567.1| - 0.0019 17.5 0.6 0.0019 17.5 0.4 2.0 2 0 0 2 2 2 1 PcrB family FMN_dh PF01070.13 gi|390937829|ref|YP_006401567.1| - 0.0063 15.3 0.3 0.0095 14.8 0.2 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase TMP-TENI PF02581.12 gi|390937829|ref|YP_006401567.1| - 0.014 14.5 0.3 0.027 13.6 0.2 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|390937829|ref|YP_006401567.1| - 0.025 13.4 0.9 0.026 13.4 0.7 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain ThiG PF05690.9 gi|390937829|ref|YP_006401567.1| - 0.036 13.1 0.9 0.062 12.3 0.4 1.6 1 1 0 1 1 1 0 Thiazole biosynthesis protein ThiG TIM-br_sig_trns PF09370.5 gi|390937829|ref|YP_006401567.1| - 0.073 12.1 0.5 0.44 9.5 0.1 2.3 2 1 0 2 2 2 0 TIM-barrel signal transduction protein tRNA-synt_1b PF00579.20 gi|390937830|ref|YP_006401568.1| - 3.8e-46 157.5 0.0 7.1e-46 156.6 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|390937830|ref|YP_006401568.1| - 0.033 12.8 0.0 0.33 9.5 0.0 2.4 3 0 0 3 3 3 0 tRNA synthetases class I (K) SIS PF01380.17 gi|390937831|ref|YP_006401569.1| - 4.2e-37 126.6 1.0 8e-25 86.9 0.5 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|390937831|ref|YP_006401569.1| - 8.3e-16 58.1 0.0 1.9e-15 57.0 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|390937831|ref|YP_006401569.1| - 3.8e-11 42.2 0.0 2.2e-08 33.2 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|390937831|ref|YP_006401569.1| - 1.2e-10 41.1 0.0 2.5e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|390937831|ref|YP_006401569.1| - 0.00021 21.0 1.3 0.0004 20.1 0.4 1.8 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.1 gi|390937831|ref|YP_006401569.1| - 0.0007 18.3 0.0 0.00095 17.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II ParA PF10609.4 gi|390937831|ref|YP_006401569.1| - 0.018 14.9 0.3 0.067 13.0 0.1 2.1 2 0 0 2 2 2 0 ParA/MinD ATPase like GGDN PF05165.7 gi|390937832|ref|YP_006401570.1| - 0.0028 16.7 0.0 0.015 14.3 0.0 2.0 2 1 0 2 2 2 1 GGDN family Toxin_64 PF15542.1 gi|390937832|ref|YP_006401570.1| - 0.058 13.9 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 Putative toxin 64 Snf7 PF03357.16 gi|390937835|ref|YP_006401573.1| - 0.00092 18.6 0.7 0.0018 17.6 0.0 1.7 2 0 0 2 2 2 1 Snf7 Sigma70_r4_2 PF08281.7 gi|390937835|ref|YP_006401573.1| - 0.0057 16.0 0.6 0.015 14.7 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Cor1 PF04803.7 gi|390937835|ref|YP_006401573.1| - 0.11 12.2 1.7 13 5.5 0.2 2.6 2 1 0 2 2 2 0 Cor1/Xlr/Xmr conserved region LOH1CR12 PF10158.4 gi|390937835|ref|YP_006401573.1| - 0.15 11.8 1.0 0.35 10.6 0.3 1.9 2 0 0 2 2 2 0 Tumour suppressor protein DUF3876 PF12992.2 gi|390937836|ref|YP_006401574.1| - 0.13 12.2 0.1 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3876) AIRS_C PF02769.17 gi|390937837|ref|YP_006401575.1| - 6.3e-18 65.2 0.2 1.1e-17 64.4 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|390937837|ref|YP_006401575.1| - 3.1e-09 36.9 0.0 8.3e-09 35.5 0.0 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain zf-B_box PF00643.19 gi|390937838|ref|YP_006401576.1| - 1.7e-07 31.0 28.0 0.0017 18.2 4.5 4.0 3 1 1 4 4 4 4 B-box zinc finger zf-HIT PF04438.11 gi|390937838|ref|YP_006401576.1| - 0.00052 19.5 5.9 0.00052 19.5 4.1 4.4 2 1 1 3 3 3 1 HIT zinc finger FYVE PF01363.16 gi|390937838|ref|YP_006401576.1| - 0.021 14.7 30.2 0.57 10.1 2.8 4.0 1 1 2 3 3 3 0 FYVE zinc finger Prok-RING_2 PF14445.1 gi|390937838|ref|YP_006401576.1| - 0.08 12.9 22.8 0.97 9.4 4.0 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 zf-AN1 PF01428.11 gi|390937838|ref|YP_006401576.1| - 0.32 10.9 22.1 0.23 11.3 1.2 3.9 1 1 3 4 4 4 0 AN1-like Zinc finger zf-C3HC4_3 PF13920.1 gi|390937838|ref|YP_006401576.1| - 0.64 9.7 26.5 1.4 8.6 5.3 3.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|390937838|ref|YP_006401576.1| - 0.82 9.5 25.7 1.5e+04 -4.3 17.8 3.7 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_5 PF14634.1 gi|390937838|ref|YP_006401576.1| - 5.1 6.9 26.2 4.5 7.0 7.1 3.2 2 2 0 2 2 2 0 zinc-RING finger domain Desulfoferrod_N PF06397.7 gi|390937838|ref|YP_006401576.1| - 8.5 5.8 27.0 0.29 10.5 0.7 4.8 3 2 2 5 5 5 0 Desulfoferrodoxin, N-terminal domain TatD_DNase PF01026.16 gi|390937839|ref|YP_006401577.1| - 2.7e-18 66.0 0.0 3.2e-18 65.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase ABC_cobalt PF09819.4 gi|390937840|ref|YP_006401578.1| - 3.6e-33 114.2 6.2 3.6e-33 114.2 4.3 1.7 2 0 0 2 2 2 1 ABC-type cobalt transport system, permease component CytB6-F_Fe-S PF08802.5 gi|390937840|ref|YP_006401578.1| - 0.3 11.1 10.3 6.2 6.9 0.5 3.7 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit DUF3060 PF11259.3 gi|390937841|ref|YP_006401579.1| - 0.0062 16.1 0.6 0.015 14.9 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3060) NAD_synthase PF02540.12 gi|390937842|ref|YP_006401580.1| - 1.6e-73 246.6 0.0 1.9e-73 246.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|390937842|ref|YP_006401580.1| - 2.4e-05 23.0 0.0 0.0008 18.0 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Arginosuc_synth PF00764.14 gi|390937842|ref|YP_006401580.1| - 0.065 12.2 0.0 0.091 11.7 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase QueC PF06508.8 gi|390937842|ref|YP_006401580.1| - 0.16 11.2 0.0 0.45 9.7 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|390937842|ref|YP_006401580.1| - 0.17 11.3 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase AMMECR1 PF01871.12 gi|390937843|ref|YP_006401581.1| - 3.3e-52 176.0 0.0 3.9e-52 175.8 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Mut7-C PF01927.11 gi|390937844|ref|YP_006401582.1| - 2.1e-44 151.0 0.0 2.5e-44 150.8 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain CBS PF00571.23 gi|390937845|ref|YP_006401583.1| - 7.1e-30 102.5 1.9 2.1e-09 36.9 0.0 4.1 4 0 0 4 4 4 4 CBS domain DUF1788 PF08747.6 gi|390937845|ref|YP_006401583.1| - 0.0069 16.2 0.2 2 8.3 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1788) CBS PF00571.23 gi|390937846|ref|YP_006401584.1| - 6e-50 166.7 12.2 1.2e-14 53.8 0.9 4.2 4 0 0 4 4 4 4 CBS domain Flavin_Reduct PF01613.13 gi|390937847|ref|YP_006401585.1| - 1.3e-30 106.2 0.0 1.6e-30 106.0 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain HTH_24 PF13412.1 gi|390937848|ref|YP_006401586.1| - 2.3e-15 55.6 2.0 4.5e-15 54.7 1.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|390937848|ref|YP_006401586.1| - 1.1e-14 53.9 0.2 1.7e-14 53.2 0.2 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|390937848|ref|YP_006401586.1| - 2.5e-14 52.5 1.9 3.7e-14 51.9 1.3 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|390937848|ref|YP_006401586.1| - 3e-06 26.7 0.5 0.0005 19.6 0.3 2.3 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.5 gi|390937848|ref|YP_006401586.1| - 2.6e-05 23.7 0.1 5.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|390937848|ref|YP_006401586.1| - 0.00016 21.3 0.1 0.00077 19.1 0.2 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|390937848|ref|YP_006401586.1| - 0.00019 21.7 0.2 0.00047 20.4 0.1 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|390937848|ref|YP_006401586.1| - 0.00037 19.9 0.4 0.00081 18.8 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|390937848|ref|YP_006401586.1| - 0.00055 19.5 0.1 0.0019 17.8 0.1 1.8 2 0 0 2 2 2 1 MarR family Penicillinase_R PF03965.11 gi|390937848|ref|YP_006401586.1| - 0.00057 19.9 0.0 0.001 19.1 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.14 gi|390937848|ref|YP_006401586.1| - 0.00063 19.3 0.1 0.0013 18.4 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|390937848|ref|YP_006401586.1| - 0.0012 18.4 0.1 0.0035 16.9 0.1 1.7 1 1 1 2 2 2 1 Homeodomain-like domain HTH_20 PF12840.2 gi|390937848|ref|YP_006401586.1| - 0.0013 18.4 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|390937848|ref|YP_006401586.1| - 0.012 15.2 0.0 0.065 12.9 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|390937848|ref|YP_006401586.1| - 0.015 15.3 0.0 0.044 13.7 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|390937848|ref|YP_006401586.1| - 0.016 14.4 0.2 0.031 13.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_Tc3_2 PF01498.13 gi|390937848|ref|YP_006401586.1| - 0.016 15.2 0.4 0.034 14.2 0.3 1.5 1 0 0 1 1 1 0 Transposase DUF2250 PF10007.4 gi|390937848|ref|YP_006401586.1| - 0.018 14.9 0.2 0.032 14.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Sigma70_r4_2 PF08281.7 gi|390937848|ref|YP_006401586.1| - 0.02 14.3 0.1 0.039 13.4 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.1 gi|390937848|ref|YP_006401586.1| - 0.075 13.2 0.1 0.13 12.4 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain RuvB_C PF05491.8 gi|390937848|ref|YP_006401586.1| - 0.082 12.5 0.1 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus EAP30 PF04157.11 gi|390937848|ref|YP_006401586.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family FeoC PF09012.5 gi|390937848|ref|YP_006401586.1| - 0.14 11.9 0.1 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Gln-synt_C PF00120.19 gi|390937849|ref|YP_006401587.1| - 3.1e-64 216.6 0.0 3.9e-64 216.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|390937849|ref|YP_006401587.1| - 7.1e-10 38.3 0.1 2.5e-09 36.5 0.0 1.9 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Thi4 PF01946.12 gi|390937850|ref|YP_006401588.1| - 0.027 13.5 0.0 0.043 12.8 0.0 1.3 1 0 0 1 1 1 0 Thi4 family FAD_binding_3 PF01494.14 gi|390937850|ref|YP_006401588.1| - 0.075 12.0 0.1 0.39 9.7 0.0 1.9 2 0 0 2 2 2 0 FAD binding domain AdoMet_dc PF02675.10 gi|390937851|ref|YP_006401589.1| - 1.1e-30 105.6 0.0 1.2e-30 105.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase UPF0051 PF01458.12 gi|390937854|ref|YP_006401592.1| - 7.8e-17 61.4 0.0 1e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|390937855|ref|YP_006401593.1| - 1.3e-57 194.8 0.4 1.6e-57 194.5 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|390937856|ref|YP_006401594.1| - 3e-20 72.9 0.0 3.9e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390937856|ref|YP_006401594.1| - 5e-14 52.9 0.1 4.1e-12 46.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|390937856|ref|YP_006401594.1| - 8.7e-10 38.1 0.0 2.1e-08 33.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|390937856|ref|YP_006401594.1| - 0.00012 21.5 0.1 0.00023 20.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|390937856|ref|YP_006401594.1| - 0.0005 19.5 0.0 0.2 11.0 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_23 PF13476.1 gi|390937856|ref|YP_006401594.1| - 0.00096 19.5 0.1 0.0015 18.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|390937856|ref|YP_006401594.1| - 0.0033 16.6 0.1 0.0046 16.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|390937856|ref|YP_006401594.1| - 0.0045 16.4 0.0 0.0076 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|390937856|ref|YP_006401594.1| - 0.0054 15.8 0.0 0.37 9.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|390937856|ref|YP_006401594.1| - 0.0061 15.0 0.0 0.9 7.9 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|390937856|ref|YP_006401594.1| - 0.014 15.5 0.1 0.063 13.4 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|390937856|ref|YP_006401594.1| - 0.023 14.3 0.3 0.76 9.4 0.0 2.5 1 1 2 3 3 3 0 NACHT domain UPF0079 PF02367.12 gi|390937856|ref|YP_006401594.1| - 0.084 12.5 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|390937856|ref|YP_006401594.1| - 0.089 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|390937856|ref|YP_006401594.1| - 0.093 12.7 0.2 0.13 12.1 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain MutS_V PF00488.16 gi|390937856|ref|YP_006401594.1| - 0.094 12.0 0.1 0.23 10.8 0.1 1.5 2 0 0 2 2 2 0 MutS domain V AAA_22 PF13401.1 gi|390937856|ref|YP_006401594.1| - 0.11 12.6 0.2 0.37 10.9 0.1 1.8 2 1 0 2 2 2 0 AAA domain AA_kinase PF00696.23 gi|390937857|ref|YP_006401595.1| - 4.5e-31 108.2 0.0 5.1e-31 108.0 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family EamA PF00892.15 gi|390937858|ref|YP_006401596.1| - 3.4e-18 65.8 40.5 6.5e-11 42.3 11.4 2.3 2 1 0 2 2 2 2 EamA-like transporter family Amidohydro_1 PF01979.15 gi|390937859|ref|YP_006401597.1| - 2.6e-39 135.8 0.0 3.1e-39 135.5 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|390937859|ref|YP_006401597.1| - 8.4e-10 38.3 0.0 2.5e-09 36.7 0.0 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|390937859|ref|YP_006401597.1| - 4.4e-09 36.0 0.0 3.6e-08 33.0 0.0 2.2 2 1 0 2 2 2 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|390937859|ref|YP_006401597.1| - 4.1e-07 30.3 0.0 1.2e-06 28.7 0.0 1.8 2 0 0 2 2 2 1 Amidohydrolase Trm112p PF03966.11 gi|390937860|ref|YP_006401598.1| - 8.7e-12 45.2 1.7 1.3e-11 44.6 1.2 1.2 1 0 0 1 1 1 1 Trm112p-like protein NOB1_Zn_bind PF08772.6 gi|390937860|ref|YP_006401598.1| - 0.044 13.6 0.6 0.12 12.2 0.1 1.9 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.2 gi|390937860|ref|YP_006401598.1| - 0.38 10.6 6.4 1.7 8.5 4.4 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-UBR PF02207.15 gi|390937860|ref|YP_006401598.1| - 1.9 8.2 6.7 0.56 9.9 1.1 2.1 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) PGM_PMM_I PF02878.11 gi|390937861|ref|YP_006401599.1| - 7.8e-45 151.7 0.0 1.4e-44 150.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|390937861|ref|YP_006401599.1| - 2.6e-21 75.9 0.0 6.7e-21 74.5 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|390937861|ref|YP_006401599.1| - 1.2e-20 73.6 0.0 2.1e-20 72.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|390937861|ref|YP_006401599.1| - 1.6e-12 47.2 0.1 4e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Phytoreo_S7 PF07236.6 gi|390937861|ref|YP_006401599.1| - 0.052 11.8 0.0 0.079 11.2 0.0 1.1 1 0 0 1 1 1 0 Phytoreovirus S7 protein DUF3107 PF11305.3 gi|390937862|ref|YP_006401600.1| - 0.017 14.9 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3107) Img2 PF05046.9 gi|390937862|ref|YP_006401600.1| - 0.028 14.6 0.0 0.044 14.0 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DUF2229 PF09989.4 gi|390937862|ref|YP_006401600.1| - 0.07 12.5 0.0 0.077 12.4 0.0 1.1 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) Jag_N PF14804.1 gi|390937862|ref|YP_006401600.1| - 0.075 13.0 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Jag N-terminus TGS PF02824.16 gi|390937864|ref|YP_006401602.1| - 5.7e-19 67.7 0.0 1e-18 66.9 0.0 1.4 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|390937864|ref|YP_006401602.1| - 9.1e-16 57.8 0.0 1.9e-15 56.8 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|390937864|ref|YP_006401602.1| - 1.8e-09 37.0 0.0 1.4e-08 34.1 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|390937864|ref|YP_006401602.1| - 2.3e-06 27.1 0.0 1 8.7 0.0 3.5 2 2 1 3 3 3 3 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.8 gi|390937864|ref|YP_006401602.1| - 0.0027 17.4 0.2 0.12 12.2 0.2 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF933) Miro PF08477.8 gi|390937864|ref|YP_006401602.1| - 0.004 17.6 0.0 0.014 15.8 0.0 2.0 2 0 0 2 2 2 1 Miro-like protein SRPRB PF09439.5 gi|390937864|ref|YP_006401602.1| - 0.0058 15.8 0.0 0.012 14.8 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_22 PF13401.1 gi|390937864|ref|YP_006401602.1| - 0.019 15.1 0.0 0.075 13.1 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|390937864|ref|YP_006401602.1| - 0.021 14.6 0.1 4.7 7.1 0.0 2.5 1 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|390937864|ref|YP_006401602.1| - 0.023 13.8 0.0 0.061 12.4 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Dynamin_N PF00350.18 gi|390937864|ref|YP_006401602.1| - 0.054 13.3 0.0 0.69 9.7 0.0 2.6 3 0 0 3 3 3 0 Dynamin family AAA_28 PF13521.1 gi|390937864|ref|YP_006401602.1| - 0.095 12.6 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain YceG PF02618.11 gi|390937864|ref|YP_006401602.1| - 0.13 11.2 0.0 0.62 9.0 0.0 1.9 2 0 0 2 2 2 0 YceG-like family PPV_E1_C PF00519.12 gi|390937864|ref|YP_006401602.1| - 0.18 10.4 0.0 0.32 9.5 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase RNase_HII PF01351.13 gi|390937865|ref|YP_006401603.1| - 1.5e-31 109.5 0.0 1.8e-31 109.3 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII DUF2153 PF09921.4 gi|390937866|ref|YP_006401604.1| - 3.1e-45 152.8 3.2 3.5e-45 152.6 2.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Nrap PF03813.9 gi|390937866|ref|YP_006401604.1| - 0.023 12.2 0.5 0.028 11.9 0.3 1.1 1 0 0 1 1 1 0 Nrap protein Glypican PF01153.14 gi|390937866|ref|YP_006401604.1| - 0.058 11.9 0.3 0.068 11.7 0.2 1.0 1 0 0 1 1 1 0 Glypican VPR PF00522.13 gi|390937866|ref|YP_006401604.1| - 0.11 12.3 1.1 0.73 9.6 0.1 2.4 1 1 1 2 2 2 0 VPR/VPX protein DNase_II PF03265.10 gi|390937866|ref|YP_006401604.1| - 0.12 11.3 0.1 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 Deoxyribonuclease II DapH_N PF08503.5 gi|390937867|ref|YP_006401605.1| - 0.0084 16.2 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate succinyltransferase N-terminal RE_AlwI PF09491.5 gi|390937867|ref|YP_006401605.1| - 0.021 13.3 0.0 0.028 12.9 0.0 1.2 1 0 0 1 1 1 0 AlwI restriction endonuclease tRNA_NucTran2_2 PF13735.1 gi|390937868|ref|YP_006401606.1| - 0.045 13.5 0.1 0.12 12.2 0.0 1.7 2 1 0 2 2 2 0 tRNA nucleotidyltransferase domain 2 putative Tmemb_18A PF09771.4 gi|390937868|ref|YP_006401606.1| - 0.16 11.9 1.4 0.32 10.9 0.4 1.9 1 1 0 1 1 1 0 Transmembrane protein 188 DUF457 PF04307.9 gi|390937869|ref|YP_006401607.1| - 3.7e-10 39.3 8.6 4.8e-10 38.9 6.0 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|390937869|ref|YP_006401607.1| - 0.00066 19.3 0.2 0.00075 19.1 0.1 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF3169 PF11368.3 gi|390937869|ref|YP_006401607.1| - 0.049 12.8 0.2 0.049 12.8 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) TIP49 PF06068.8 gi|390937870|ref|YP_006401608.1| - 1.9e-162 540.5 2.3 2.3e-162 540.2 1.6 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|390937870|ref|YP_006401608.1| - 5.6e-12 45.9 4.2 4e-09 36.7 0.1 3.0 4 0 0 4 4 3 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|390937870|ref|YP_006401608.1| - 8.7e-09 35.6 1.5 0.00057 19.9 0.0 2.8 2 1 0 3 3 3 2 AAA ATPase domain RuvB_N PF05496.7 gi|390937870|ref|YP_006401608.1| - 4.4e-08 32.4 5.2 1.4e-06 27.5 0.0 3.4 3 1 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|390937870|ref|YP_006401608.1| - 9.8e-07 29.1 0.0 2.8e-06 27.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|390937870|ref|YP_006401608.1| - 1.3e-06 28.5 0.1 0.0036 17.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|390937870|ref|YP_006401608.1| - 1.8e-05 25.5 0.4 8.1e-05 23.4 0.0 2.3 3 0 0 3 3 2 1 AAA domain AAA_19 PF13245.1 gi|390937870|ref|YP_006401608.1| - 2.5e-05 23.9 0.0 6.8e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|390937870|ref|YP_006401608.1| - 8.9e-05 21.9 0.2 0.00032 20.1 0.1 1.9 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|390937870|ref|YP_006401608.1| - 9e-05 22.2 0.1 0.00043 20.0 0.0 2.3 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|390937870|ref|YP_006401608.1| - 0.00052 19.4 0.1 0.0011 18.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|390937870|ref|YP_006401608.1| - 0.00066 18.9 0.7 0.0015 17.7 0.1 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|390937870|ref|YP_006401608.1| - 0.0013 17.7 0.0 0.0028 16.6 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.7 gi|390937870|ref|YP_006401608.1| - 0.003 16.6 0.1 0.0065 15.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin DBI_PRT PF02277.12 gi|390937870|ref|YP_006401608.1| - 0.0032 16.6 0.9 0.009 15.1 0.5 1.8 2 0 0 2 2 2 1 Phosphoribosyltransferase AAA_33 PF13671.1 gi|390937870|ref|YP_006401608.1| - 0.0034 17.2 0.0 0.0073 16.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|390937870|ref|YP_006401608.1| - 0.0051 16.4 0.1 0.39 10.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.10 gi|390937870|ref|YP_006401608.1| - 0.0098 14.8 0.1 0.032 13.0 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_28 PF13521.1 gi|390937870|ref|YP_006401608.1| - 0.014 15.3 0.1 0.048 13.6 0.1 2.0 2 0 0 2 2 1 0 AAA domain PhoH PF02562.11 gi|390937870|ref|YP_006401608.1| - 0.019 14.2 0.1 0.042 13.0 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_14 PF13173.1 gi|390937870|ref|YP_006401608.1| - 0.02 14.8 0.0 0.84 9.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|390937870|ref|YP_006401608.1| - 0.02 14.4 0.1 0.041 13.4 0.0 1.5 2 0 0 2 2 1 0 AAA domain Sigma54_activat PF00158.21 gi|390937870|ref|YP_006401608.1| - 0.021 14.2 0.5 0.28 10.6 0.0 2.7 3 0 0 3 3 3 0 Sigma-54 interaction domain TFIID-31kDa PF02291.10 gi|390937870|ref|YP_006401608.1| - 0.023 14.5 0.0 0.27 11.0 0.0 2.3 3 0 0 3 3 2 0 Transcription initiation factor IID, 31kD subunit ResIII PF04851.10 gi|390937870|ref|YP_006401608.1| - 0.024 14.4 0.1 0.088 12.6 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|390937870|ref|YP_006401608.1| - 0.03 14.4 0.0 0.06 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase KTI12 PF08433.5 gi|390937870|ref|YP_006401608.1| - 0.031 13.5 0.0 0.065 12.4 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ABC_tran PF00005.22 gi|390937870|ref|YP_006401608.1| - 0.057 13.7 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter SBF2 PF12335.3 gi|390937870|ref|YP_006401608.1| - 0.057 12.7 0.0 0.092 12.0 0.0 1.2 1 0 0 1 1 1 0 Myotubularin protein Parvo_NS1 PF01057.12 gi|390937870|ref|YP_006401608.1| - 0.058 12.2 0.2 0.21 10.4 0.0 1.9 1 1 1 2 2 2 0 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|390937870|ref|YP_006401608.1| - 0.074 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Pyridoxal_deC PF00282.14 gi|390937871|ref|YP_006401609.1| - 5.4e-24 84.3 0.0 2e-23 82.4 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|390937871|ref|YP_006401609.1| - 4.1e-14 52.1 0.0 6.7e-12 44.8 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|390937871|ref|YP_006401609.1| - 2.3e-09 36.8 0.0 6e-09 35.4 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|390937871|ref|YP_006401609.1| - 3.1e-08 32.9 0.1 1.9e-05 23.7 0.0 2.5 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|390937871|ref|YP_006401609.1| - 0.075 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|390937871|ref|YP_006401609.1| - 0.16 10.4 0.1 0.54 8.7 0.0 1.8 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain RIO1 PF01163.17 gi|390937872|ref|YP_006401610.1| - 1.2e-43 148.6 0.0 1.8e-43 148.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|390937872|ref|YP_006401610.1| - 2.5e-20 72.3 0.3 5.6e-20 71.2 0.2 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|390937872|ref|YP_006401610.1| - 1.3e-07 31.5 0.0 3e-06 27.1 0.0 2.8 1 1 0 1 1 1 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|390937872|ref|YP_006401610.1| - 0.00029 19.9 0.0 0.00064 18.8 0.0 1.6 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|390937872|ref|YP_006401610.1| - 0.00058 19.0 0.0 0.001 18.3 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|390937872|ref|YP_006401610.1| - 0.0013 17.9 0.0 0.0031 16.7 0.0 1.6 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) TrmB PF01978.14 gi|390937872|ref|YP_006401610.1| - 0.029 14.0 0.6 0.12 12.0 0.1 2.4 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Fructosamin_kin PF03881.9 gi|390937872|ref|YP_006401610.1| - 0.074 12.0 0.0 0.2 10.6 0.0 1.7 2 0 0 2 2 2 0 Fructosamine kinase DUF460 PF04312.8 gi|390937873|ref|YP_006401611.1| - 1.6e-44 150.7 2.1 2.9e-44 149.9 0.9 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF460) AAA_13 PF13166.1 gi|390937873|ref|YP_006401611.1| - 0.012 14.0 7.9 0.019 13.4 5.5 1.2 1 0 0 1 1 1 0 AAA domain MSC PF09402.5 gi|390937873|ref|YP_006401611.1| - 0.038 12.7 1.6 2 7.0 0.1 2.3 2 0 0 2 2 2 0 Man1-Src1p-C-terminal domain TMF_DNA_bd PF12329.3 gi|390937873|ref|YP_006401611.1| - 0.053 13.3 13.6 0.47 10.2 0.8 3.5 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF641 PF04859.7 gi|390937873|ref|YP_006401611.1| - 0.087 12.5 0.2 0.087 12.5 0.1 2.8 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) ApoC-I PF04691.7 gi|390937873|ref|YP_006401611.1| - 0.13 11.9 0.7 0.33 10.6 0.1 2.0 2 0 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) Fib_alpha PF08702.5 gi|390937873|ref|YP_006401611.1| - 0.7 9.9 7.0 0.64 10.1 2.5 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Tropomyosin_1 PF12718.2 gi|390937873|ref|YP_006401611.1| - 0.97 9.2 8.9 5.1 6.9 6.2 2.2 1 1 0 1 1 1 0 Tropomyosin like Ead_Ea22 PF13935.1 gi|390937873|ref|YP_006401611.1| - 1.7 8.9 6.4 0.46 10.8 1.8 1.9 2 0 0 2 2 2 0 Ead/Ea22-like protein Med9 PF07544.8 gi|390937873|ref|YP_006401611.1| - 2.8 7.7 8.1 2.4 7.9 3.2 2.6 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Atg14 PF10186.4 gi|390937873|ref|YP_006401611.1| - 2.8 6.7 6.2 9.4 5.0 4.3 1.8 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|390937873|ref|YP_006401611.1| - 3.6 7.1 12.2 0.045 13.3 2.9 1.8 2 0 0 2 2 2 0 IncA protein DUF1192 PF06698.6 gi|390937873|ref|YP_006401611.1| - 9.9 6.0 7.7 3.5 7.5 0.1 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF1192) AdoMet_Synthase PF01941.14 gi|390937874|ref|YP_006401612.1| - 8.8e-167 554.5 1.8 1e-166 554.3 1.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) FbpA PF05833.6 gi|390937875|ref|YP_006401613.1| - 2.7e-39 134.9 6.3 3.7e-39 134.5 4.4 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|390937875|ref|YP_006401613.1| - 3.3e-24 84.5 0.0 7.4e-24 83.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) NPV_P10 PF05531.7 gi|390937875|ref|YP_006401613.1| - 0.0098 16.1 0.7 0.12 12.6 0.0 2.3 2 0 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.8 gi|390937875|ref|YP_006401613.1| - 0.026 15.2 1.0 0.026 15.2 0.7 3.1 3 0 0 3 3 3 0 Occludin homology domain Herpes_UL14 PF03580.9 gi|390937875|ref|YP_006401613.1| - 0.038 13.7 0.3 0.038 13.7 0.2 1.9 2 0 0 2 2 2 0 Herpesvirus UL14-like protein Baculo_PEP_C PF04513.7 gi|390937875|ref|YP_006401613.1| - 0.086 12.6 1.1 0.39 10.5 0.0 2.0 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4349 PF14257.1 gi|390937875|ref|YP_006401613.1| - 0.22 10.7 1.4 1.7 7.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) DUF1664 PF07889.7 gi|390937875|ref|YP_006401613.1| - 0.77 9.5 6.3 0.45 10.3 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|390937875|ref|YP_006401613.1| - 0.97 8.0 14.3 0.074 11.7 4.8 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein Nup54 PF13874.1 gi|390937875|ref|YP_006401613.1| - 2.8 7.6 7.6 0.94 9.1 0.5 2.4 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 DUF972 PF06156.8 gi|390937875|ref|YP_006401613.1| - 2.9 8.2 5.7 19 5.6 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF972) DUF4140 PF13600.1 gi|390937875|ref|YP_006401613.1| - 3.7 8.0 5.2 3.7 8.0 0.2 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Laminin_II PF06009.7 gi|390937875|ref|YP_006401613.1| - 5.7 6.6 8.1 23 4.7 2.4 2.3 1 1 1 2 2 2 0 Laminin Domain II Tropomyosin_1 PF12718.2 gi|390937875|ref|YP_006401613.1| - 6.6 6.5 13.0 0.47 10.2 2.3 2.2 2 0 0 2 2 2 0 Tropomyosin like 7TMR-DISM_7TM PF07695.6 gi|390937876|ref|YP_006401614.1| - 0.01 15.5 6.5 0.013 15.2 4.5 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling EutH PF04346.7 gi|390937876|ref|YP_006401614.1| - 0.048 12.6 0.7 0.051 12.5 0.5 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein, EutH DUF4063 PF13272.1 gi|390937876|ref|YP_006401614.1| - 0.1 12.4 0.9 0.14 11.9 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4063) DUF2763 PF10961.3 gi|390937876|ref|YP_006401614.1| - 0.14 12.5 0.5 0.3 11.5 0.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2763) DUF4199 PF13858.1 gi|390937876|ref|YP_006401614.1| - 0.99 9.3 6.9 1.2 9.0 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) RNA_Me_trans PF04252.8 gi|390937877|ref|YP_006401615.1| - 7.3e-36 123.4 0.0 8.8e-36 123.1 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Translin PF01997.11 gi|390937878|ref|YP_006401616.1| - 2.3e-37 128.5 0.1 3.1e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 Translin family HEPN PF05168.9 gi|390937878|ref|YP_006401616.1| - 0.051 13.4 0.8 0.37 10.6 0.0 2.2 2 1 0 2 2 2 0 HEPN domain PPR PF01535.15 gi|390937878|ref|YP_006401616.1| - 0.06 13.3 0.1 0.48 10.5 0.0 2.7 3 0 0 3 3 3 0 PPR repeat Stanniocalcin PF03298.8 gi|390937878|ref|YP_006401616.1| - 0.084 11.8 0.0 0.15 11.0 0.0 1.4 2 0 0 2 2 2 0 Stanniocalcin family MarR_2 PF12802.2 gi|390937879|ref|YP_006401617.1| - 7.3e-06 25.5 0.0 1.5e-05 24.5 0.0 1.5 2 0 0 2 2 2 1 MarR family RNA_pol_Rpc34 PF05158.7 gi|390937879|ref|YP_006401617.1| - 2.5e-05 23.6 2.4 0.00074 18.7 0.1 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit TrmB PF01978.14 gi|390937879|ref|YP_006401617.1| - 4.3e-05 23.1 0.5 7.7e-05 22.3 0.3 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|390937879|ref|YP_006401617.1| - 5.5e-05 22.7 0.1 9.3e-05 22.0 0.1 1.4 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|390937879|ref|YP_006401617.1| - 8.2e-05 22.3 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Rrf2 PF02082.15 gi|390937879|ref|YP_006401617.1| - 0.00089 19.3 0.1 0.0018 18.3 0.1 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|390937879|ref|YP_006401617.1| - 0.0016 18.6 0.0 0.0028 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|390937879|ref|YP_006401617.1| - 0.0032 16.9 0.1 0.0074 15.7 0.1 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|390937879|ref|YP_006401617.1| - 0.0059 16.2 0.3 0.013 15.1 0.2 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family z-alpha PF02295.12 gi|390937879|ref|YP_006401617.1| - 0.035 13.8 0.1 0.057 13.1 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_11 PF08279.7 gi|390937879|ref|YP_006401617.1| - 0.055 13.1 0.4 0.1 12.2 0.3 1.5 1 0 0 1 1 1 0 HTH domain RasGAP PF00616.14 gi|390937879|ref|YP_006401617.1| - 0.065 12.8 0.0 0.066 12.8 0.0 1.2 1 0 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase Trans_reg_C PF00486.23 gi|390937879|ref|YP_006401617.1| - 0.065 13.1 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal DUF1495 PF07381.6 gi|390937879|ref|YP_006401617.1| - 0.079 12.6 0.1 0.17 11.5 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|390937879|ref|YP_006401617.1| - 0.11 12.3 0.0 0.27 11.0 0.0 1.6 1 1 1 2 2 2 0 Winged helix-turn-helix Radical_SAM PF04055.16 gi|390937880|ref|YP_006401618.1| - 2e-25 89.8 0.1 5.1e-25 88.5 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|390937880|ref|YP_006401618.1| - 3.2e-07 30.2 0.0 8.3e-07 28.9 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain DUF3847 PF12958.2 gi|390937880|ref|YP_006401618.1| - 0.072 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3847) TrmB PF01978.14 gi|390937881|ref|YP_006401619.1| - 0.038 13.7 0.2 0.096 12.4 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.6 gi|390937881|ref|YP_006401619.1| - 0.056 13.8 0.0 0.064 13.6 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal HAD_2 PF13419.1 gi|390937882|ref|YP_006401620.1| - 3.4e-08 33.9 0.0 5.3e-08 33.2 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|390937882|ref|YP_006401620.1| - 5.4e-05 22.8 0.0 8.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like EF-hand_1 PF00036.27 gi|390937882|ref|YP_006401620.1| - 0.13 11.6 0.1 0.37 10.2 0.1 1.9 1 0 0 1 1 1 0 EF hand TatD_DNase PF01026.16 gi|390937884|ref|YP_006401622.1| - 2.3e-38 131.8 0.0 2.8e-38 131.5 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.19 gi|390937884|ref|YP_006401622.1| - 0.00081 18.7 0.0 0.0012 18.1 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel MecA_N PF05223.6 gi|390937885|ref|YP_006401623.1| - 0.13 12.3 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 NTF2-like N-terminal transpeptidase domain GerE PF00196.14 gi|390937886|ref|YP_006401624.1| - 5.6e-05 22.3 0.2 0.00027 20.1 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Macoilin PF09726.4 gi|390937886|ref|YP_006401624.1| - 8.9e-05 20.9 4.2 9.9e-05 20.8 2.9 1.1 1 0 0 1 1 1 1 Transmembrane protein Sigma70_r4_2 PF08281.7 gi|390937886|ref|YP_006401624.1| - 0.0002 20.7 0.0 0.00053 19.3 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.1 gi|390937886|ref|YP_006401624.1| - 0.0002 21.5 1.4 0.00035 20.7 0.2 1.9 1 1 1 2 2 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|390937886|ref|YP_006401624.1| - 0.0002 20.8 0.0 0.00054 19.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain IncA PF04156.9 gi|390937886|ref|YP_006401624.1| - 0.00024 20.7 8.1 0.00035 20.2 5.6 1.4 1 0 0 1 1 1 1 IncA protein ATG16 PF08614.6 gi|390937886|ref|YP_006401624.1| - 0.00037 20.3 8.3 0.00064 19.6 5.8 1.4 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) HTH_23 PF13384.1 gi|390937886|ref|YP_006401624.1| - 0.00054 19.5 0.0 0.0011 18.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain ADIP PF11559.3 gi|390937886|ref|YP_006401624.1| - 0.00072 19.4 9.3 0.0018 18.1 6.4 1.7 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding DUF2353 PF09789.4 gi|390937886|ref|YP_006401624.1| - 0.0012 18.1 8.0 0.0017 17.7 5.6 1.2 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) HTH_11 PF08279.7 gi|390937886|ref|YP_006401624.1| - 0.0017 17.9 0.2 0.016 14.8 0.0 2.5 2 0 0 2 2 2 1 HTH domain MAD PF05557.8 gi|390937886|ref|YP_006401624.1| - 0.0019 16.4 9.9 0.0022 16.1 6.8 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein KorB PF08535.5 gi|390937886|ref|YP_006401624.1| - 0.0026 17.8 1.5 0.063 13.4 0.0 2.5 1 1 0 2 2 2 1 KorB domain HTH_24 PF13412.1 gi|390937886|ref|YP_006401624.1| - 0.0031 16.8 1.4 0.012 14.9 0.1 2.7 3 0 0 3 3 1 1 Winged helix-turn-helix DNA-binding ApoLp-III PF07464.6 gi|390937886|ref|YP_006401624.1| - 0.0042 17.1 8.4 0.0042 17.1 5.8 1.5 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) HTH_29 PF13551.1 gi|390937886|ref|YP_006401624.1| - 0.0064 16.6 0.1 0.012 15.7 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn helix DUF812 PF05667.6 gi|390937886|ref|YP_006401624.1| - 0.0091 14.5 6.7 0.011 14.2 4.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) TMF_DNA_bd PF12329.3 gi|390937886|ref|YP_006401624.1| - 0.0092 15.7 15.3 0.0092 15.7 10.6 2.2 3 0 0 3 3 1 1 TATA element modulatory factor 1 DNA binding Atg14 PF10186.4 gi|390937886|ref|YP_006401624.1| - 0.0092 14.9 8.5 0.012 14.5 5.9 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Lipoprotein_20 PF13942.1 gi|390937886|ref|YP_006401624.1| - 0.0093 15.5 4.3 0.016 14.7 3.0 1.4 1 0 0 1 1 1 1 YfhG lipoprotein Bap31 PF05529.7 gi|390937886|ref|YP_006401624.1| - 0.0094 15.4 4.7 0.015 14.7 3.2 1.4 1 0 0 1 1 1 1 B-cell receptor-associated protein 31-like DUF3552 PF12072.3 gi|390937886|ref|YP_006401624.1| - 0.0097 15.1 12.1 0.0097 15.1 8.4 1.4 2 0 0 2 2 1 1 Domain of unknown function (DUF3552) Spc7 PF08317.6 gi|390937886|ref|YP_006401624.1| - 0.0099 14.5 10.9 0.014 14.1 7.5 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF641 PF04859.7 gi|390937886|ref|YP_006401624.1| - 0.01 15.5 3.9 0.018 14.8 2.7 1.5 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) HTH_DeoR PF08220.7 gi|390937886|ref|YP_006401624.1| - 0.012 15.1 0.1 0.06 12.8 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|390937886|ref|YP_006401624.1| - 0.015 15.0 0.1 0.07 12.9 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain Tropomyosin PF00261.15 gi|390937886|ref|YP_006401624.1| - 0.016 14.3 13.1 0.033 13.2 9.1 1.5 1 0 0 1 1 1 0 Tropomyosin DUF4407 PF14362.1 gi|390937886|ref|YP_006401624.1| - 0.017 14.1 3.3 0.025 13.5 2.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HTH_28 PF13518.1 gi|390937886|ref|YP_006401624.1| - 0.018 15.0 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|390937886|ref|YP_006401624.1| - 0.02 14.5 0.0 0.057 13.1 0.0 1.8 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family Herpes_U30 PF04523.8 gi|390937886|ref|YP_006401624.1| - 0.023 12.2 1.3 0.028 11.8 0.9 1.1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 Filament PF00038.16 gi|390937886|ref|YP_006401624.1| - 0.025 14.0 11.9 0.034 13.6 8.0 1.3 1 1 0 1 1 1 0 Intermediate filament protein Sigma70_r4 PF04545.11 gi|390937886|ref|YP_006401624.1| - 0.027 13.7 0.9 0.057 12.7 0.0 2.0 2 0 0 2 2 1 0 Sigma-70, region 4 Bacillus_HBL PF05791.6 gi|390937886|ref|YP_006401624.1| - 0.037 13.4 8.7 0.064 12.6 6.0 1.5 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) AAA_13 PF13166.1 gi|390937886|ref|YP_006401624.1| - 0.037 12.5 8.4 0.047 12.1 5.8 1.1 1 0 0 1 1 1 0 AAA domain TMF_TATA_bd PF12325.3 gi|390937886|ref|YP_006401624.1| - 0.041 13.6 13.8 0.17 11.6 9.3 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding TrmB PF01978.14 gi|390937886|ref|YP_006401624.1| - 0.043 13.5 1.0 0.89 9.3 0.0 2.7 3 0 0 3 3 2 0 Sugar-specific transcriptional regulator TrmB CENP-Q PF13094.1 gi|390937886|ref|YP_006401624.1| - 0.044 13.8 12.8 0.1 12.5 8.9 1.6 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF4164 PF13747.1 gi|390937886|ref|YP_006401624.1| - 0.049 13.7 12.8 0.07 13.2 7.4 2.2 2 1 0 2 2 1 0 Domain of unknown function (DUF4164) NPV_P10 PF05531.7 gi|390937886|ref|YP_006401624.1| - 0.053 13.7 6.4 2.4 8.4 0.4 2.8 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Peptidase_C6 PF00851.13 gi|390937886|ref|YP_006401624.1| - 0.054 12.1 2.2 0.062 11.9 1.5 1.1 1 0 0 1 1 1 0 Helper component proteinase GrpE PF01025.14 gi|390937886|ref|YP_006401624.1| - 0.065 12.7 12.5 0.1 12.1 8.4 1.6 1 1 0 1 1 1 0 GrpE DUF342 PF03961.8 gi|390937886|ref|YP_006401624.1| - 0.081 11.3 8.3 0.11 10.8 5.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Baculo_PEP_C PF04513.7 gi|390937886|ref|YP_006401624.1| - 0.084 12.6 7.2 0.17 11.6 4.1 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fmp27_WPPW PF10359.4 gi|390937886|ref|YP_006401624.1| - 0.092 11.1 5.9 0.14 10.5 4.1 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DivIC PF04977.10 gi|390937886|ref|YP_006401624.1| - 0.095 12.2 16.4 0.093 12.2 3.9 2.6 1 1 1 2 2 2 0 Septum formation initiator DUF1759 PF03564.10 gi|390937886|ref|YP_006401624.1| - 0.11 12.3 5.7 0.15 11.8 3.5 1.6 1 1 1 2 2 1 0 Protein of unknown function (DUF1759) Peptidase_S46 PF10459.4 gi|390937886|ref|YP_006401624.1| - 0.12 10.7 4.3 0.19 10.0 3.0 1.2 1 0 0 1 1 1 0 Peptidase S46 Fib_alpha PF08702.5 gi|390937886|ref|YP_006401624.1| - 0.13 12.3 8.8 0.18 11.9 0.6 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF2570 PF10828.3 gi|390937886|ref|YP_006401624.1| - 0.13 11.8 4.3 0.23 11.1 3.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) DUF4446 PF14584.1 gi|390937886|ref|YP_006401624.1| - 0.14 12.0 4.3 0.31 10.8 3.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) OmpH PF03938.9 gi|390937886|ref|YP_006401624.1| - 0.14 12.1 6.2 0.19 11.6 4.3 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) APG6 PF04111.7 gi|390937886|ref|YP_006401624.1| - 0.14 11.1 10.4 0.17 10.8 7.2 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 L31 PF09784.4 gi|390937886|ref|YP_006401624.1| - 0.15 12.1 2.0 0.31 11.1 1.4 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L31 Cep57_MT_bd PF06657.8 gi|390937886|ref|YP_006401624.1| - 0.15 12.0 8.1 0.11 12.3 3.7 2.1 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Tropomyosin_1 PF12718.2 gi|390937886|ref|YP_006401624.1| - 0.16 11.8 18.0 0.028 14.2 9.3 1.9 2 0 0 2 2 2 0 Tropomyosin like bZIP_2 PF07716.10 gi|390937886|ref|YP_006401624.1| - 0.16 11.7 16.1 1.6 8.6 3.4 2.9 1 1 1 2 2 2 0 Basic region leucine zipper Reo_sigmaC PF04582.7 gi|390937886|ref|YP_006401624.1| - 0.16 11.0 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein TPR_MLP1_2 PF07926.7 gi|390937886|ref|YP_006401624.1| - 0.17 11.6 14.7 0.22 11.2 9.6 1.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Nup54 PF13874.1 gi|390937886|ref|YP_006401624.1| - 0.22 11.2 7.6 0.22 11.2 3.4 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Nsp1_C PF05064.8 gi|390937886|ref|YP_006401624.1| - 0.25 10.9 7.0 0.43 10.2 4.8 1.3 1 0 0 1 1 1 0 Nsp1-like C-terminal region Cauli_AT PF03233.8 gi|390937886|ref|YP_006401624.1| - 0.29 10.8 11.8 1.5 8.4 7.1 2.3 1 1 1 2 2 2 0 Aphid transmission protein Lebercilin PF15619.1 gi|390937886|ref|YP_006401624.1| - 0.29 10.5 17.3 1.9 7.8 6.2 2.2 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease PspA_IM30 PF04012.7 gi|390937886|ref|YP_006401624.1| - 0.3 10.4 11.1 0.072 12.4 5.6 1.4 2 0 0 2 2 1 0 PspA/IM30 family DUF948 PF06103.6 gi|390937886|ref|YP_006401624.1| - 0.43 10.4 8.1 1.6 8.6 3.6 2.9 1 1 3 4 4 3 0 Bacterial protein of unknown function (DUF948) Phage_GP20 PF06810.6 gi|390937886|ref|YP_006401624.1| - 0.45 9.9 12.7 2 7.8 8.8 2.0 1 1 0 1 1 1 0 Phage minor structural protein GP20 DUF1664 PF07889.7 gi|390937886|ref|YP_006401624.1| - 0.47 10.2 6.2 0.97 9.2 3.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) ORF6C PF10552.4 gi|390937886|ref|YP_006401624.1| - 0.6 9.8 6.5 1.7 8.3 4.5 1.8 1 0 0 1 1 1 0 ORF6C domain Occludin_ELL PF07303.8 gi|390937886|ref|YP_006401624.1| - 0.6 10.8 7.8 28 5.5 5.0 2.5 2 1 0 2 2 2 0 Occludin homology domain V_ATPase_I PF01496.14 gi|390937886|ref|YP_006401624.1| - 0.61 7.8 7.1 0.77 7.5 4.9 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMPIT PF07851.8 gi|390937886|ref|YP_006401624.1| - 0.67 8.9 4.3 1 8.3 3.0 1.3 1 0 0 1 1 1 0 TMPIT-like protein GAS PF13851.1 gi|390937886|ref|YP_006401624.1| - 0.69 9.0 17.7 1.7 7.8 11.6 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding COG2 PF06148.6 gi|390937886|ref|YP_006401624.1| - 0.79 9.5 10.6 16 5.3 7.4 2.7 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Rootletin PF15035.1 gi|390937886|ref|YP_006401624.1| - 0.84 9.5 14.4 1.5 8.8 10.0 1.4 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion HSP70 PF00012.15 gi|390937886|ref|YP_006401624.1| - 0.96 7.2 6.1 1.1 7.0 4.2 1.2 1 0 0 1 1 1 0 Hsp70 protein Tmemb_cc2 PF10267.4 gi|390937886|ref|YP_006401624.1| - 1.1 7.8 15.9 2 6.9 10.9 1.6 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Phasin PF05597.6 gi|390937886|ref|YP_006401624.1| - 1.2 8.9 8.9 2.2 8.0 6.1 1.6 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) TBPIP PF07106.8 gi|390937886|ref|YP_006401624.1| - 1.2 8.6 16.3 2.8 7.4 11.3 1.8 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FlaC_arch PF05377.6 gi|390937886|ref|YP_006401624.1| - 1.7 8.5 10.3 23 4.9 5.3 3.3 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Mnd1 PF03962.10 gi|390937886|ref|YP_006401624.1| - 1.9 8.0 12.8 3.2 7.3 8.6 1.7 1 1 0 1 1 1 0 Mnd1 family DUF16 PF01519.11 gi|390937886|ref|YP_006401624.1| - 2 8.7 11.2 12 6.1 7.0 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF16 CENP-F_leu_zip PF10473.4 gi|390937886|ref|YP_006401624.1| - 2 8.2 19.7 0.81 9.5 11.3 1.9 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF904 PF06005.7 gi|390937886|ref|YP_006401624.1| - 2 8.7 22.3 3.8 7.8 4.7 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF904) DUF771 PF05595.6 gi|390937886|ref|YP_006401624.1| - 2.2 8.2 6.7 41 4.1 3.2 2.8 2 2 0 2 2 2 0 Domain of unknown function (DUF771) LCD1 PF09798.4 gi|390937886|ref|YP_006401624.1| - 2.5 5.9 11.2 3.3 5.5 7.7 1.1 1 0 0 1 1 1 0 DNA damage checkpoint protein UPF0242 PF06785.6 gi|390937886|ref|YP_006401624.1| - 2.7 6.5 9.4 3.4 6.2 6.5 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) FliT PF05400.8 gi|390937886|ref|YP_006401624.1| - 3.1 8.2 11.2 1.2 9.5 2.3 2.4 1 1 1 2 2 2 0 Flagellar protein FliT Myb_CC_LHEQLE PF14379.1 gi|390937886|ref|YP_006401624.1| - 3.6 7.2 13.0 11 5.6 0.3 3.0 2 1 1 3 3 3 0 MYB-CC type transfactor, LHEQLE motif DUF4140 PF13600.1 gi|390937886|ref|YP_006401624.1| - 4.2 7.8 9.2 32 5.0 6.4 2.3 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Cep57_CLD_2 PF14197.1 gi|390937886|ref|YP_006401624.1| - 4.5 7.2 21.8 18 5.3 14.7 2.2 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 Seryl_tRNA_N PF02403.17 gi|390937886|ref|YP_006401624.1| - 4.8 7.2 16.2 5.5 7.0 9.9 2.0 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Kinetocho_Slk19 PF12709.2 gi|390937886|ref|YP_006401624.1| - 5.1 7.2 13.7 1.2 9.2 2.4 2.8 1 1 1 2 2 2 0 Central kinetochore-associated DUF1192 PF06698.6 gi|390937886|ref|YP_006401624.1| - 5.5 6.8 10.1 0.25 11.1 0.7 3.0 2 1 0 3 3 2 0 Protein of unknown function (DUF1192) Tbf5 PF06331.7 gi|390937886|ref|YP_006401624.1| - 7.7 6.3 8.5 4.3 7.1 0.4 2.9 2 1 1 3 3 2 0 Transcription factor TFIIH complex subunit Tfb5 DUF334 PF03904.8 gi|390937886|ref|YP_006401624.1| - 8.1 5.6 10.3 5.9 6.1 5.8 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF334) Sua5_yciO_yrdC PF01300.13 gi|390937888|ref|YP_006401626.1| - 9.4e-57 191.1 0.0 1.4e-56 190.5 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|390937888|ref|YP_006401626.1| - 1.4e-30 105.9 0.0 2e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding EDR1 PF14381.1 gi|390937888|ref|YP_006401626.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 KaiC PF06745.8 gi|390937889|ref|YP_006401627.1| - 4.7e-57 192.7 0.1 5.3e-57 192.5 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|390937889|ref|YP_006401627.1| - 1.6e-10 40.7 0.0 2.4e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|390937889|ref|YP_006401627.1| - 8.3e-06 25.0 0.0 1.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|390937889|ref|YP_006401627.1| - 0.00025 19.5 0.9 0.0023 16.3 0.6 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein Rad51 PF08423.6 gi|390937889|ref|YP_006401627.1| - 0.0039 16.1 0.0 0.0077 15.1 0.0 1.5 1 0 0 1 1 1 1 Rad51 IstB_IS21 PF01695.12 gi|390937889|ref|YP_006401627.1| - 0.005 16.2 0.0 0.009 15.4 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|390937889|ref|YP_006401627.1| - 0.0075 16.0 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain DnaB_C PF03796.10 gi|390937889|ref|YP_006401627.1| - 0.018 13.9 0.0 0.027 13.3 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain PAXNEB PF05625.6 gi|390937889|ref|YP_006401627.1| - 0.018 13.8 0.1 0.037 12.8 0.1 1.4 2 0 0 2 2 2 0 PAXNEB protein MEDS PF14417.1 gi|390937889|ref|YP_006401627.1| - 0.029 13.4 0.0 0.038 13.0 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_5 PF07728.9 gi|390937889|ref|YP_006401627.1| - 0.066 12.9 0.0 0.11 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF2348 PF09807.4 gi|390937889|ref|YP_006401627.1| - 0.075 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2348) AAA_14 PF13173.1 gi|390937889|ref|YP_006401627.1| - 0.075 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|390937889|ref|YP_006401627.1| - 0.13 12.3 0.1 0.22 11.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|390937889|ref|YP_006401627.1| - 0.14 11.3 0.0 8.4 5.5 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ATP-synt_ab PF00006.20 gi|390937889|ref|YP_006401627.1| - 0.15 11.5 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF643 PF04867.7 gi|390937889|ref|YP_006401627.1| - 0.25 11.7 2.3 0.31 11.4 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF643) Helicase_RecD PF05127.9 gi|390937890|ref|YP_006401628.1| - 4.7e-54 182.6 0.0 7.6e-54 182.0 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|390937890|ref|YP_006401628.1| - 1.6e-48 164.6 0.0 1.5e-47 161.4 0.0 2.1 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|390937890|ref|YP_006401628.1| - 5.6e-27 93.2 0.0 3.6e-26 90.6 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.1 gi|390937890|ref|YP_006401628.1| - 9.2e-08 32.1 0.0 3.8e-07 30.1 0.0 2.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|390937890|ref|YP_006401628.1| - 2.1e-07 30.8 0.1 6.8e-07 29.2 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family tRNA_bind_2 PF13725.1 gi|390937890|ref|YP_006401628.1| - 2e-05 24.6 0.0 0.0015 18.5 0.0 3.0 3 0 0 3 3 3 1 Possible tRNA binding domain Acetyltransf_10 PF13673.1 gi|390937890|ref|YP_006401628.1| - 0.063 13.4 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA PF00004.24 gi|390937891|ref|YP_006401629.1| - 6.7e-98 324.0 0.0 3.6e-50 169.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|390937891|ref|YP_006401629.1| - 2.9e-26 91.2 0.3 1.3e-25 89.0 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|390937891|ref|YP_006401629.1| - 9.3e-17 60.4 0.1 4.7e-16 58.1 0.0 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|390937891|ref|YP_006401629.1| - 6.7e-16 58.0 0.0 2.4e-08 33.3 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|390937891|ref|YP_006401629.1| - 9.3e-15 55.0 0.0 1.8e-06 28.1 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|390937891|ref|YP_006401629.1| - 7.9e-14 51.9 0.4 2e-06 27.9 0.0 4.3 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|390937891|ref|YP_006401629.1| - 2.2e-13 50.4 0.0 3e-07 30.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|390937891|ref|YP_006401629.1| - 1.5e-12 47.3 0.7 3.7e-06 26.6 0.0 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|390937891|ref|YP_006401629.1| - 1.8e-12 46.7 0.1 5e-05 22.1 0.0 2.7 2 1 1 3 3 3 2 TIP49 C-terminus AAA_17 PF13207.1 gi|390937891|ref|YP_006401629.1| - 1.9e-12 48.0 0.1 3.1e-06 28.0 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|390937891|ref|YP_006401629.1| - 2.3e-12 47.0 0.0 2.6e-05 24.1 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|390937891|ref|YP_006401629.1| - 2e-10 40.6 0.0 3.3e-05 23.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|390937891|ref|YP_006401629.1| - 3.5e-10 39.3 0.0 7.6e-05 21.8 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|390937891|ref|YP_006401629.1| - 1.6e-09 37.4 0.0 0.0016 17.9 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|390937891|ref|YP_006401629.1| - 5.9e-09 36.0 0.0 0.0013 18.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|390937891|ref|YP_006401629.1| - 1.5e-08 35.0 0.7 0.0014 18.9 0.0 3.1 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.17 gi|390937891|ref|YP_006401629.1| - 1.2e-07 31.8 0.0 0.0029 17.7 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_19 PF13245.1 gi|390937891|ref|YP_006401629.1| - 2.2e-07 30.4 4.1 0.014 15.1 0.1 3.4 3 0 0 3 3 3 2 Part of AAA domain AAA_25 PF13481.1 gi|390937891|ref|YP_006401629.1| - 2.5e-07 30.3 11.0 0.079 12.3 0.4 5.2 2 2 2 4 4 4 2 AAA domain Mg_chelatase PF01078.16 gi|390937891|ref|YP_006401629.1| - 3.1e-07 29.7 1.1 0.014 14.5 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|390937891|ref|YP_006401629.1| - 1.8e-06 27.8 0.3 0.0013 18.4 0.0 3.2 3 1 1 4 4 2 1 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|390937891|ref|YP_006401629.1| - 1.1e-05 25.4 0.0 0.18 11.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain KaiC PF06745.8 gi|390937891|ref|YP_006401629.1| - 1.9e-05 23.8 4.5 0.27 10.3 0.0 4.3 3 2 0 5 5 5 2 KaiC ABC_tran PF00005.22 gi|390937891|ref|YP_006401629.1| - 2e-05 24.8 0.0 0.21 11.8 0.0 2.5 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.11 gi|390937891|ref|YP_006401629.1| - 2.8e-05 23.4 0.9 0.14 11.3 0.1 2.8 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.6 gi|390937891|ref|YP_006401629.1| - 2.8e-05 23.7 0.0 0.088 12.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Vps4_C PF09336.5 gi|390937891|ref|YP_006401629.1| - 2.9e-05 23.8 0.1 0.36 10.7 0.0 3.0 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain Parvo_NS1 PF01057.12 gi|390937891|ref|YP_006401629.1| - 3.1e-05 22.9 0.1 0.037 12.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.21 gi|390937891|ref|YP_006401629.1| - 3.3e-05 23.4 0.0 0.34 10.3 0.0 3.1 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|390937891|ref|YP_006401629.1| - 3.9e-05 23.3 3.0 0.044 13.3 0.1 2.6 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|390937891|ref|YP_006401629.1| - 4e-05 23.3 2.0 0.27 10.8 0.0 3.8 4 0 0 4 4 4 1 NACHT domain DUF2075 PF09848.4 gi|390937891|ref|YP_006401629.1| - 0.00011 21.3 0.0 0.05 12.5 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|390937891|ref|YP_006401629.1| - 0.00013 21.6 0.0 0.0097 15.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein DUF815 PF05673.8 gi|390937891|ref|YP_006401629.1| - 0.00013 20.9 0.0 0.32 9.8 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) UPF0079 PF02367.12 gi|390937891|ref|YP_006401629.1| - 0.0002 20.9 0.0 0.32 10.6 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 SKI PF01202.17 gi|390937891|ref|YP_006401629.1| - 0.00062 19.6 0.0 0.88 9.4 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase T2SE PF00437.15 gi|390937891|ref|YP_006401629.1| - 0.00084 18.3 0.0 0.28 10.0 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|390937891|ref|YP_006401629.1| - 0.0015 18.2 3.7 8.2 6.0 0.0 4.6 3 1 1 4 4 4 0 NTPase AAA_11 PF13086.1 gi|390937891|ref|YP_006401629.1| - 0.0017 17.9 0.0 1.2 8.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|390937891|ref|YP_006401629.1| - 0.0047 15.8 0.1 1.9 7.2 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain KAP_NTPase PF07693.9 gi|390937891|ref|YP_006401629.1| - 0.0049 15.9 0.0 1 8.2 0.0 2.9 2 1 1 3 3 3 1 KAP family P-loop domain AAA_10 PF12846.2 gi|390937891|ref|YP_006401629.1| - 0.0064 15.9 0.9 1.3 8.4 0.1 3.2 3 1 0 3 3 3 1 AAA-like domain ResIII PF04851.10 gi|390937891|ref|YP_006401629.1| - 0.0068 16.2 0.0 4.2 7.1 0.0 2.5 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit IPT PF01745.11 gi|390937891|ref|YP_006401629.1| - 0.01 15.0 0.5 3.3 6.7 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase KTI12 PF08433.5 gi|390937891|ref|YP_006401629.1| - 0.011 15.0 0.0 3.4 6.8 0.0 2.8 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Cytidylate_kin2 PF13189.1 gi|390937891|ref|YP_006401629.1| - 0.012 15.5 0.0 0.35 10.7 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_30 PF13604.1 gi|390937891|ref|YP_006401629.1| - 0.016 14.7 0.0 5.8 6.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain Molydop_binding PF01568.16 gi|390937891|ref|YP_006401629.1| - 0.017 14.9 0.1 0.095 12.5 0.0 2.1 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain PduV-EutP PF10662.4 gi|390937891|ref|YP_006401629.1| - 0.027 13.9 0.0 5.1 6.5 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP-synt_ab PF00006.20 gi|390937891|ref|YP_006401629.1| - 0.029 13.8 0.0 6.7 6.1 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AFG1_ATPase PF03969.11 gi|390937891|ref|YP_006401629.1| - 0.053 12.3 0.0 9.7 4.8 0.0 2.7 3 0 0 3 3 3 0 AFG1-like ATPase PEX-2N PF09263.5 gi|390937891|ref|YP_006401629.1| - 0.057 13.7 0.0 5.3 7.4 0.0 2.6 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal Guanylate_kin PF00625.16 gi|390937891|ref|YP_006401629.1| - 0.071 12.5 0.2 23 4.3 0.0 3.6 2 2 2 4 4 4 0 Guanylate kinase AAA_29 PF13555.1 gi|390937891|ref|YP_006401629.1| - 0.11 12.0 0.0 14 5.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.13 gi|390937891|ref|YP_006401629.1| - 0.13 11.8 0.0 3.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.10 gi|390937891|ref|YP_006401629.1| - 0.18 10.4 0.0 6.1 5.3 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein PIF1 PF05970.9 gi|390937891|ref|YP_006401629.1| - 0.26 10.1 0.0 5.5 5.8 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase AAA_23 PF13476.1 gi|390937891|ref|YP_006401629.1| - 0.28 11.4 0.2 19 5.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain PPV_E1_C PF00519.12 gi|390937891|ref|YP_006401629.1| - 0.29 9.7 0.0 8.5 4.8 0.0 2.6 3 0 0 3 3 3 0 Papillomavirus helicase AAA_21 PF13304.1 gi|390937891|ref|YP_006401629.1| - 0.45 10.4 2.1 6.8 6.5 0.1 2.9 2 1 1 3 3 3 0 AAA domain KaiC PF06745.8 gi|390937892|ref|YP_006401630.1| - 6.6e-88 293.6 0.1 7.4e-88 293.4 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|390937892|ref|YP_006401630.1| - 7.1e-12 45.1 0.0 1e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|390937892|ref|YP_006401630.1| - 4.9e-05 21.8 0.1 6.7e-05 21.3 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein DUF2075 PF09848.4 gi|390937892|ref|YP_006401630.1| - 0.00097 18.1 0.6 0.0061 15.5 0.2 1.9 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|390937892|ref|YP_006401630.1| - 0.0012 18.5 0.3 0.0036 17.0 0.2 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|390937892|ref|YP_006401630.1| - 0.0016 18.7 0.0 0.0053 17.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|390937892|ref|YP_006401630.1| - 0.002 17.2 0.2 0.2 10.6 0.0 2.7 3 0 0 3 3 3 1 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|390937892|ref|YP_006401630.1| - 0.0046 15.8 0.0 0.0085 14.9 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_14 PF13173.1 gi|390937892|ref|YP_006401630.1| - 0.0078 16.1 0.0 0.014 15.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|390937892|ref|YP_006401630.1| - 0.0087 16.1 0.1 0.025 14.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|390937892|ref|YP_006401630.1| - 0.01 14.7 0.0 0.018 13.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|390937892|ref|YP_006401630.1| - 0.012 15.7 0.3 0.024 14.8 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad51 PF08423.6 gi|390937892|ref|YP_006401630.1| - 0.027 13.3 0.1 0.19 10.6 0.0 2.0 2 0 0 2 2 2 0 Rad51 AAA_28 PF13521.1 gi|390937892|ref|YP_006401630.1| - 0.032 14.2 0.7 0.089 12.7 0.2 2.0 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|390937892|ref|YP_006401630.1| - 0.034 14.1 0.2 0.099 12.6 0.1 1.7 2 0 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|390937892|ref|YP_006401630.1| - 0.039 13.3 0.0 0.076 12.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|390937892|ref|YP_006401630.1| - 0.043 13.4 0.1 3.9 6.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|390937892|ref|YP_006401630.1| - 0.044 13.4 0.4 0.095 12.4 0.3 1.5 1 1 0 1 1 1 0 NTPase Parvo_NS1 PF01057.12 gi|390937892|ref|YP_006401630.1| - 0.047 12.5 0.0 0.088 11.6 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PAXNEB PF05625.6 gi|390937892|ref|YP_006401630.1| - 0.057 12.2 0.3 0.36 9.6 0.0 1.9 2 0 0 2 2 2 0 PAXNEB protein Zeta_toxin PF06414.7 gi|390937892|ref|YP_006401630.1| - 0.065 12.3 0.5 0.25 10.4 0.1 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_17 PF13207.1 gi|390937892|ref|YP_006401630.1| - 0.067 14.0 0.3 0.14 13.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|390937892|ref|YP_006401630.1| - 0.072 12.7 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Flavoprotein PF02441.14 gi|390937894|ref|YP_006401632.1| - 2.5e-23 82.1 0.0 4.2e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein LRV_FeS PF05484.6 gi|390937895|ref|YP_006401633.1| - 0.25 10.9 2.9 1.1 8.8 2.0 2.0 1 1 0 1 1 1 0 LRV protein FeS4 cluster PhoU_div PF01865.11 gi|390937896|ref|YP_006401634.1| - 1.6e-13 50.3 7.2 2e-13 50.0 5.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|390937896|ref|YP_006401634.1| - 4.5e-06 27.0 4.2 5.1e-05 23.6 0.4 2.2 2 0 0 2 2 2 1 PhoU domain GAT PF03127.9 gi|390937896|ref|YP_006401634.1| - 0.0018 18.1 4.2 0.46 10.4 0.1 2.4 2 1 0 2 2 2 2 GAT domain His_kinase PF06580.8 gi|390937896|ref|YP_006401634.1| - 0.015 15.2 1.1 0.18 11.7 0.1 2.7 2 1 0 2 2 2 0 Histidine kinase DUF4559 PF15112.1 gi|390937896|ref|YP_006401634.1| - 0.033 13.3 4.1 0.16 11.0 1.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) UPF0118 PF01594.11 gi|390937896|ref|YP_006401634.1| - 0.051 12.5 0.3 0.076 11.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF20 Syntaxin_2 PF14523.1 gi|390937896|ref|YP_006401634.1| - 0.11 12.5 1.3 3.9 7.5 0.8 2.8 2 1 1 3 3 3 0 Syntaxin-like protein P4Ha_N PF08336.6 gi|390937896|ref|YP_006401634.1| - 0.48 10.2 4.3 0.31 10.8 0.2 2.6 3 1 0 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region NPV_P10 PF05531.7 gi|390937896|ref|YP_006401634.1| - 0.86 9.8 6.6 30 4.9 4.0 3.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Radical_SAM PF04055.16 gi|390937897|ref|YP_006401635.1| - 2.8e-16 60.1 0.5 3e-15 56.7 0.0 2.8 1 1 3 4 4 4 1 Radical SAM superfamily B12-binding PF02310.14 gi|390937897|ref|YP_006401635.1| - 2.4e-08 33.8 0.0 6.6e-08 32.4 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain ApoB100_C PF12491.3 gi|390937898|ref|YP_006401636.1| - 0.55 9.9 3.5 11 5.7 0.1 3.3 2 2 1 3 3 3 0 Apolipoprotein B100 C terminal Molydop_binding PF01568.16 gi|390937899|ref|YP_006401637.1| - 0.00058 19.6 0.0 0.00078 19.2 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain tRNA-synt_2b PF00587.20 gi|390937900|ref|YP_006401638.1| - 7.6e-50 168.8 0.0 1.5e-49 167.9 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|390937900|ref|YP_006401638.1| - 1.5e-23 82.5 0.5 3.7e-23 81.2 0.4 1.7 1 0 0 1 1 1 1 Anticodon binding domain zf-C2H2 PF00096.21 gi|390937900|ref|YP_006401638.1| - 0.08 13.3 1.0 41 4.8 0.0 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|390937900|ref|YP_006401638.1| - 0.19 11.6 0.2 5.7 6.9 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Arginase PF00491.16 gi|390937901|ref|YP_006401639.1| - 2.4e-61 207.5 0.0 3.1e-61 207.1 0.0 1.0 1 0 0 1 1 1 1 Arginase family PLD_C PF12357.3 gi|390937901|ref|YP_006401639.1| - 0.085 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Phospholipase D C terminal zinc_ribbon_5 PF13719.1 gi|390937902|ref|YP_006401640.1| - 0.00023 20.6 3.3 0.19 11.3 0.2 2.2 1 1 1 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|390937902|ref|YP_006401640.1| - 0.00025 20.4 7.2 0.0017 17.7 5.0 2.0 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|390937902|ref|YP_006401640.1| - 0.00075 19.4 2.2 0.0011 18.8 1.5 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|390937902|ref|YP_006401640.1| - 0.00083 19.0 3.6 0.13 11.9 0.2 2.2 1 1 1 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|390937902|ref|YP_006401640.1| - 0.0021 17.8 2.9 0.046 13.5 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|390937902|ref|YP_006401640.1| - 0.0036 17.1 7.0 0.11 12.4 4.9 2.1 1 1 1 2 2 2 1 Rubredoxin zf-RING_2 PF13639.1 gi|390937902|ref|YP_006401640.1| - 0.0064 16.2 0.2 0.0082 15.9 0.1 1.2 1 0 0 1 1 1 1 Ring finger domain UPF0547 PF10571.4 gi|390937902|ref|YP_006401640.1| - 0.0065 16.1 4.4 0.52 10.0 0.4 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|390937902|ref|YP_006401640.1| - 0.0091 15.1 5.0 0.12 11.6 3.5 2.0 1 1 1 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|390937902|ref|YP_006401640.1| - 0.0095 15.2 2.5 0.44 9.9 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|390937902|ref|YP_006401640.1| - 0.019 14.6 1.6 0.036 13.7 1.1 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF4379 PF14311.1 gi|390937902|ref|YP_006401640.1| - 0.03 14.1 0.8 0.036 13.8 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) Rtf2 PF04641.7 gi|390937902|ref|YP_006401640.1| - 0.033 13.3 0.7 0.036 13.2 0.5 1.0 1 0 0 1 1 1 0 Rtf2 RING-finger HypA PF01155.14 gi|390937902|ref|YP_006401640.1| - 0.041 13.5 0.2 0.043 13.5 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-H2C2_5 PF13909.1 gi|390937902|ref|YP_006401640.1| - 0.044 14.0 1.4 3.7 7.9 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc-finger domain DZR PF12773.2 gi|390937902|ref|YP_006401640.1| - 0.046 13.5 1.4 0.43 10.4 1.0 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-CHY PF05495.7 gi|390937902|ref|YP_006401640.1| - 0.048 13.8 0.3 0.058 13.5 0.2 1.1 1 0 0 1 1 1 0 CHY zinc finger DUF164 PF02591.10 gi|390937902|ref|YP_006401640.1| - 0.048 13.5 0.7 0.059 13.2 0.5 1.2 1 0 0 1 1 1 0 Putative zinc ribbon domain zf-H2C2_2 PF13465.1 gi|390937902|ref|YP_006401640.1| - 0.05 13.9 3.8 4.6 7.7 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.21 gi|390937902|ref|YP_006401640.1| - 0.053 13.8 2.5 0.71 10.3 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF3342 PF11822.3 gi|390937902|ref|YP_006401640.1| - 0.059 12.5 0.1 0.059 12.5 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3342) TFIIS_C PF01096.13 gi|390937902|ref|YP_006401640.1| - 0.059 13.0 2.9 4.2 7.0 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Mu-like_Com PF10122.4 gi|390937902|ref|YP_006401640.1| - 0.068 12.2 1.7 5 6.2 0.1 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com Ribosomal_S27e PF01667.12 gi|390937902|ref|YP_006401640.1| - 0.069 12.7 0.5 0.85 9.2 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 DUF329 PF03884.9 gi|390937902|ref|YP_006401640.1| - 0.072 12.6 1.6 0.4 10.2 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zinc_ribbon_2 PF13240.1 gi|390937902|ref|YP_006401640.1| - 0.11 11.9 2.9 2.6 7.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|390937902|ref|YP_006401640.1| - 0.12 11.9 4.4 1.9 8.1 0.4 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-C4_Topoisom PF01396.14 gi|390937902|ref|YP_006401640.1| - 0.13 11.7 2.1 0.16 11.5 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-CSL PF05207.8 gi|390937902|ref|YP_006401640.1| - 0.14 11.6 2.8 0.2 11.1 1.9 1.3 1 1 0 1 1 1 0 CSL zinc finger zf-Nse PF11789.3 gi|390937902|ref|YP_006401640.1| - 0.14 11.6 0.8 0.18 11.3 0.6 1.2 1 0 0 1 1 1 0 Zinc-finger of the MIZ type in Nse subunit zf-C2H2_4 PF13894.1 gi|390937902|ref|YP_006401640.1| - 0.16 12.3 1.1 1.4 9.4 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Cys_rich_CPCC PF14206.1 gi|390937902|ref|YP_006401640.1| - 0.19 11.2 1.1 11 5.7 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPCC DUF3133 PF11331.3 gi|390937902|ref|YP_006401640.1| - 0.49 9.9 2.2 4.8 6.8 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3133) Zn_Tnp_IS1 PF03811.8 gi|390937902|ref|YP_006401640.1| - 0.53 9.8 3.2 0.91 9.0 0.3 2.0 2 0 0 2 2 2 0 InsA N-terminal domain DUF2225 PF09986.4 gi|390937902|ref|YP_006401640.1| - 0.55 9.6 2.6 3.1 7.2 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-AN1 PF01428.11 gi|390937902|ref|YP_006401640.1| - 0.57 10.0 3.1 10 6.0 0.2 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger RNA_POL_M_15KD PF02150.11 gi|390937902|ref|YP_006401640.1| - 1.1 8.9 5.7 5.1 6.8 0.3 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ISL3 PF14690.1 gi|390937902|ref|YP_006401640.1| - 2.8 8.0 5.4 4.7 7.3 0.3 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2082 PF09855.4 gi|390937902|ref|YP_006401640.1| - 3.3 7.6 5.5 2 8.3 0.4 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) SUI1 PF01253.17 gi|390937903|ref|YP_006401641.1| - 5e-23 80.7 0.4 5.9e-23 80.4 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 TFIIB PF00382.14 gi|390937904|ref|YP_006401642.1| - 3.7e-41 138.7 1.1 4.8e-22 77.5 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|390937904|ref|YP_006401642.1| - 8.2e-14 50.6 0.2 1.4e-13 49.9 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|390937904|ref|YP_006401642.1| - 2.9e-06 27.2 0.0 0.096 12.6 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4 PF04545.11 gi|390937904|ref|YP_006401642.1| - 0.0011 18.2 0.1 0.0011 18.2 0.1 3.1 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|390937904|ref|YP_006401642.1| - 0.0031 16.6 0.1 0.16 11.1 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Cyclin_N PF00134.18 gi|390937904|ref|YP_006401642.1| - 0.017 14.6 0.0 1.3 8.5 0.1 2.7 2 1 1 3 3 3 0 Cyclin, N-terminal domain Rrf2 PF02082.15 gi|390937904|ref|YP_006401642.1| - 0.024 14.7 0.4 11 6.2 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|390937904|ref|YP_006401642.1| - 0.025 14.0 0.0 0.088 12.3 0.0 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF188 PF02639.9 gi|390937904|ref|YP_006401642.1| - 0.029 13.8 0.0 0.063 12.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 Sigma70_r4_2 PF08281.7 gi|390937904|ref|YP_006401642.1| - 0.035 13.5 1.4 0.12 11.8 0.1 2.7 3 1 0 3 3 3 0 Sigma-70, region 4 MRP-L28 PF09812.4 gi|390937904|ref|YP_006401642.1| - 0.091 12.5 0.2 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L28 ABC_tran PF00005.22 gi|390937906|ref|YP_006401644.1| - 1.1e-27 96.9 0.0 1.4e-27 96.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390937906|ref|YP_006401644.1| - 2e-11 44.3 0.2 1.1e-05 25.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|390937906|ref|YP_006401644.1| - 1.8e-06 27.3 0.2 3.7e-05 23.0 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|390937906|ref|YP_006401644.1| - 3.3e-06 27.5 0.5 6.7e-06 26.5 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|390937906|ref|YP_006401644.1| - 1.4e-05 25.9 0.5 3.7e-05 24.5 0.4 1.6 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|390937906|ref|YP_006401644.1| - 9.3e-05 22.2 0.1 0.0023 17.8 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|390937906|ref|YP_006401644.1| - 0.00015 21.5 0.8 0.00048 19.9 0.6 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|390937906|ref|YP_006401644.1| - 0.00024 20.7 0.0 0.00059 19.5 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|390937906|ref|YP_006401644.1| - 0.00034 20.6 0.1 0.0012 18.8 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|390937906|ref|YP_006401644.1| - 0.00065 19.1 0.0 0.0013 18.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|390937906|ref|YP_006401644.1| - 0.0016 16.9 0.1 0.19 10.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|390937906|ref|YP_006401644.1| - 0.0019 17.2 0.3 0.072 12.1 0.2 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|390937906|ref|YP_006401644.1| - 0.0021 17.9 0.0 0.006 16.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|390937906|ref|YP_006401644.1| - 0.0046 16.6 0.2 0.01 15.5 0.1 1.6 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.1 gi|390937906|ref|YP_006401644.1| - 0.008 16.3 0.4 0.028 14.5 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|390937906|ref|YP_006401644.1| - 0.015 15.1 0.1 0.056 13.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|390937906|ref|YP_006401644.1| - 0.016 14.8 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|390937906|ref|YP_006401644.1| - 0.017 15.4 0.2 0.17 12.1 0.2 2.3 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|390937906|ref|YP_006401644.1| - 0.025 13.5 0.0 0.039 12.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.9 gi|390937906|ref|YP_006401644.1| - 0.07 12.8 0.3 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|390937906|ref|YP_006401644.1| - 0.07 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zot PF05707.7 gi|390937906|ref|YP_006401644.1| - 0.082 12.3 0.1 9.8 5.5 0.0 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DUF258 PF03193.11 gi|390937906|ref|YP_006401644.1| - 0.091 11.9 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|390937906|ref|YP_006401644.1| - 0.097 11.5 0.0 0.22 10.3 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain SRP54 PF00448.17 gi|390937906|ref|YP_006401644.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain G-alpha PF00503.15 gi|390937906|ref|YP_006401644.1| - 0.12 11.0 0.0 0.13 10.8 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit AAA_10 PF12846.2 gi|390937906|ref|YP_006401644.1| - 0.16 11.3 0.2 3 7.2 0.1 2.0 1 1 0 2 2 2 0 AAA-like domain DUF1212 PF06738.7 gi|390937907|ref|YP_006401645.1| - 4.2 6.7 9.7 0.095 12.1 1.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1212) PBP_like_2 PF12849.2 gi|390937909|ref|YP_006401647.1| - 1.1e-12 47.9 0.0 1.4e-12 47.6 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|390937909|ref|YP_006401647.1| - 2.4e-06 27.3 0.0 4.8e-05 23.1 0.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|390937909|ref|YP_006401647.1| - 0.00013 21.0 0.0 0.00023 20.1 0.0 1.5 1 1 0 1 1 1 1 PBP superfamily domain DUF4479 PF14794.1 gi|390937909|ref|YP_006401647.1| - 0.094 12.2 0.0 0.26 10.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) LysR_substrate PF03466.15 gi|390937909|ref|YP_006401647.1| - 0.12 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain DUF3139 PF11337.3 gi|390937909|ref|YP_006401647.1| - 0.19 12.0 1.8 1.9 8.8 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) CTP_synth_N PF06418.9 gi|390937910|ref|YP_006401648.1| - 4.6e-125 416.2 0.0 6.3e-125 415.7 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|390937910|ref|YP_006401648.1| - 6.6e-39 133.3 0.0 1e-38 132.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|390937910|ref|YP_006401648.1| - 1.1e-13 51.1 0.0 1.8e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|390937910|ref|YP_006401648.1| - 6.2e-06 25.7 0.0 1.1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|390937910|ref|YP_006401648.1| - 0.01 15.4 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain ArsA_ATPase PF02374.10 gi|390937910|ref|YP_006401648.1| - 0.15 11.1 0.3 0.41 9.6 0.1 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase Pribosyltran PF00156.22 gi|390937911|ref|YP_006401649.1| - 1.1e-20 73.6 0.1 1.4e-20 73.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|390937911|ref|YP_006401649.1| - 0.0088 15.2 0.0 0.01 15.0 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|390937911|ref|YP_006401649.1| - 0.11 11.8 0.0 0.23 10.7 0.0 1.5 2 0 0 2 2 2 0 Phosphoribosyl transferase tRNA_SAD PF07973.9 gi|390937912|ref|YP_006401650.1| - 1.4e-12 47.2 0.1 3.3e-12 46.0 0.0 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|390937912|ref|YP_006401650.1| - 7.5e-08 31.1 0.0 1.1e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) PhoU PF01895.14 gi|390937913|ref|YP_006401651.1| - 5.1e-10 39.6 10.1 5.4e-05 23.5 1.8 2.2 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|390937913|ref|YP_006401651.1| - 6.4e-05 22.2 3.5 0.00082 18.5 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function DUF47 ABC_tran PF00005.22 gi|390937914|ref|YP_006401652.1| - 1.5e-32 112.7 0.0 2e-32 112.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390937914|ref|YP_006401652.1| - 1.5e-16 61.2 0.0 6.7e-10 39.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|390937914|ref|YP_006401652.1| - 1.4e-07 30.9 0.1 0.00042 19.6 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|390937914|ref|YP_006401652.1| - 8e-06 25.1 2.8 0.00041 19.5 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|390937914|ref|YP_006401652.1| - 0.00027 21.0 0.1 0.0012 19.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|390937914|ref|YP_006401652.1| - 0.00037 19.9 0.0 0.00095 18.6 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|390937914|ref|YP_006401652.1| - 0.00043 19.5 0.1 0.00073 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|390937914|ref|YP_006401652.1| - 0.0011 18.9 0.0 0.0021 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|390937914|ref|YP_006401652.1| - 0.0027 17.9 0.0 0.025 14.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|390937914|ref|YP_006401652.1| - 0.0033 17.1 0.0 0.0056 16.4 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|390937914|ref|YP_006401652.1| - 0.0051 17.1 0.8 0.026 14.8 0.2 1.9 2 0 0 2 2 2 1 AAA domain Adeno_IVa2 PF02456.10 gi|390937914|ref|YP_006401652.1| - 0.0051 15.5 0.0 0.02 13.5 0.0 1.8 2 0 0 2 2 2 1 Adenovirus IVa2 protein T2SE PF00437.15 gi|390937914|ref|YP_006401652.1| - 0.014 14.3 0.1 0.025 13.4 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|390937914|ref|YP_006401652.1| - 0.015 16.0 0.2 0.029 15.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|390937914|ref|YP_006401652.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|390937914|ref|YP_006401652.1| - 0.028 14.0 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|390937914|ref|YP_006401652.1| - 0.028 13.8 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|390937914|ref|YP_006401652.1| - 0.031 13.7 0.0 0.067 12.6 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_24 PF13479.1 gi|390937914|ref|YP_006401652.1| - 0.05 13.1 0.0 0.11 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|390937914|ref|YP_006401652.1| - 0.058 11.8 0.0 0.1 11.0 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein MutS_V PF00488.16 gi|390937914|ref|YP_006401652.1| - 0.061 12.7 0.0 0.093 12.1 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_33 PF13671.1 gi|390937914|ref|YP_006401652.1| - 0.069 13.0 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|390937914|ref|YP_006401652.1| - 0.077 12.6 0.1 0.23 11.1 0.0 2.0 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|390937914|ref|YP_006401652.1| - 0.078 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|390937914|ref|YP_006401652.1| - 0.079 12.4 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|390937914|ref|YP_006401652.1| - 0.082 12.3 0.1 0.48 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|390937914|ref|YP_006401652.1| - 0.086 12.7 0.0 0.87 9.5 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|390937914|ref|YP_006401652.1| - 0.099 12.5 0.0 0.27 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|390937914|ref|YP_006401652.1| - 0.1 12.3 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) oligo_HPY PF08352.7 gi|390937914|ref|YP_006401652.1| - 0.1 12.9 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Oligopeptide/dipeptide transporter, C-terminal region AAA_13 PF13166.1 gi|390937914|ref|YP_006401652.1| - 0.14 10.5 0.0 0.19 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|390937915|ref|YP_006401653.1| - 5.6e-13 48.8 15.7 5.6e-13 48.8 10.9 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|390937916|ref|YP_006401654.1| - 1e-11 44.6 13.5 1e-11 44.6 9.4 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|390937917|ref|YP_006401655.1| - 5.8e-52 176.8 0.0 7.7e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|390937917|ref|YP_006401655.1| - 1.8e-09 37.7 0.0 2.6e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|390937917|ref|YP_006401655.1| - 1.4e-05 24.1 0.0 5.1e-05 22.3 0.0 1.8 1 1 0 1 1 1 1 PBP superfamily domain PhoU PF01895.14 gi|390937918|ref|YP_006401656.1| - 0.00011 22.5 2.2 0.00011 22.5 1.5 2.3 2 0 0 2 2 2 1 PhoU domain Antitoxin-MazE PF04014.13 gi|390937918|ref|YP_006401656.1| - 0.00021 20.9 0.0 0.00069 19.2 0.0 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE CG-1 PF03859.11 gi|390937918|ref|YP_006401656.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 CG-1 domain FeoB_N PF02421.13 gi|390937919|ref|YP_006401657.1| - 5.6e-47 158.9 0.5 9.6e-47 158.1 0.1 1.6 2 0 0 2 2 2 1 Ferrous iron transport protein B Gate PF07670.9 gi|390937919|ref|YP_006401657.1| - 4.6e-25 87.6 18.3 4.6e-19 68.3 5.1 3.8 3 1 1 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|390937919|ref|YP_006401657.1| - 1e-16 60.9 0.1 4.1e-16 58.9 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|390937919|ref|YP_006401657.1| - 6e-06 25.5 0.8 6e-06 25.5 0.6 3.7 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus Miro PF08477.8 gi|390937919|ref|YP_006401657.1| - 0.0019 18.7 0.0 0.004 17.6 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|390937919|ref|YP_006401657.1| - 0.0033 16.6 0.1 0.0053 15.9 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|390937919|ref|YP_006401657.1| - 0.0039 16.5 0.0 0.0073 15.7 0.0 1.4 1 0 0 1 1 1 1 Ras family GTP_EFTU PF00009.22 gi|390937919|ref|YP_006401657.1| - 0.016 14.6 0.4 0.19 11.1 0.3 2.2 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|390937919|ref|YP_006401657.1| - 0.06 12.5 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUP PF00674.13 gi|390937919|ref|YP_006401657.1| - 0.37 10.7 1.7 0.74 9.7 0.0 2.4 2 1 0 2 2 2 0 DUP family FeoA PF04023.9 gi|390937920|ref|YP_006401658.1| - 3.1e-15 55.8 0.2 3.4e-15 55.7 0.1 1.0 1 0 0 1 1 1 1 FeoA domain Zip PF02535.17 gi|390937922|ref|YP_006401660.1| - 1.8e-13 50.1 13.1 1.8e-13 50.1 9.0 2.4 1 1 1 2 2 2 2 ZIP Zinc transporter Lip_prot_lig_C PF10437.4 gi|390937923|ref|YP_006401661.1| - 1.1e-06 28.2 0.2 1.3e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus LRR_4 PF12799.2 gi|390937923|ref|YP_006401661.1| - 0.047 13.3 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Leucine Rich repeats (2 copies) BPL_LplA_LipB PF03099.14 gi|390937924|ref|YP_006401662.1| - 1e-21 77.2 0.0 1.5e-21 76.7 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Radical_SAM PF04055.16 gi|390937925|ref|YP_006401663.1| - 5.6e-09 36.3 1.5 5.6e-09 36.3 1.0 2.3 2 1 0 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|390937926|ref|YP_006401664.1| - 2.8e-08 34.1 0.0 5.2e-08 33.2 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Lactamase_B PF00753.22 gi|390937927|ref|YP_006401665.1| - 3.9e-14 52.7 0.3 8.8e-14 51.5 0.2 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|390937927|ref|YP_006401665.1| - 1.8e-08 34.1 0.0 4.2e-08 32.9 0.0 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|390937927|ref|YP_006401665.1| - 0.058 13.0 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain LSM PF01423.17 gi|390937928|ref|YP_006401666.1| - 4.1e-16 58.2 0.0 5e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|390937928|ref|YP_006401666.1| - 0.00012 21.8 0.0 0.00017 21.4 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain LSM14 PF12701.2 gi|390937928|ref|YP_006401666.1| - 0.14 11.9 0.1 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Scd6-like Sm domain Methyltransf_11 PF08241.7 gi|390937929|ref|YP_006401667.1| - 9e-19 67.7 0.0 1.3e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|390937929|ref|YP_006401667.1| - 2.5e-10 40.3 0.0 3.1e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|390937929|ref|YP_006401667.1| - 3.8e-10 39.5 0.0 5.5e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|390937929|ref|YP_006401667.1| - 9.2e-10 38.8 0.0 1.6e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|390937929|ref|YP_006401667.1| - 7.2e-08 32.7 0.0 1.1e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|390937929|ref|YP_006401667.1| - 6.7e-07 28.6 0.0 8e-07 28.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|390937929|ref|YP_006401667.1| - 5.9e-06 26.8 0.0 8.2e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|390937929|ref|YP_006401667.1| - 0.0027 17.0 0.3 0.01 15.2 0.2 1.8 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|390937929|ref|YP_006401667.1| - 0.0089 16.0 0.0 0.016 15.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|390937929|ref|YP_006401667.1| - 0.056 13.0 0.1 0.18 11.4 0.1 1.7 1 1 0 1 1 1 0 Hypothetical methyltransferase DUF91 PF01939.11 gi|390937930|ref|YP_006401668.1| - 1.8e-48 164.6 0.0 2.3e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 Spc24 PF08286.6 gi|390937931|ref|YP_006401669.1| - 0.026 14.2 0.3 0.052 13.2 0.2 1.5 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 BAR_2 PF10455.4 gi|390937931|ref|YP_006401669.1| - 0.029 13.2 0.2 0.11 11.3 0.0 1.7 1 1 1 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking Cluap1 PF10234.4 gi|390937931|ref|YP_006401669.1| - 0.032 13.4 1.2 0.051 12.7 0.8 1.3 1 0 0 1 1 1 0 Clusterin-associated protein-1 DUF1465 PF07323.7 gi|390937931|ref|YP_006401669.1| - 0.035 13.6 0.1 0.064 12.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) DUF1664 PF07889.7 gi|390937931|ref|YP_006401669.1| - 0.04 13.7 1.4 0.05 13.3 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Phasin PF05597.6 gi|390937931|ref|YP_006401669.1| - 0.077 12.7 2.6 0.055 13.2 0.7 1.6 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Rootletin PF15035.1 gi|390937931|ref|YP_006401669.1| - 0.08 12.9 5.5 7 6.5 3.8 2.5 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion FlaC_arch PF05377.6 gi|390937931|ref|YP_006401669.1| - 0.77 9.7 4.5 0.47 10.3 1.0 2.3 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Lactamase_B PF00753.22 gi|390937932|ref|YP_006401670.1| - 3.4e-09 36.6 0.0 6e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|390937932|ref|YP_006401670.1| - 1e-07 31.7 0.0 3.3e-07 30.0 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DRMBL PF07522.9 gi|390937932|ref|YP_006401670.1| - 0.039 14.0 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase RMMBL PF07521.7 gi|390937932|ref|YP_006401670.1| - 0.048 13.4 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 RNA-metabolising metallo-beta-lactamase Glycos_transf_1 PF00534.15 gi|390937933|ref|YP_006401671.1| - 4.1e-28 97.9 0.0 8.4e-28 96.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|390937933|ref|YP_006401671.1| - 5.3e-09 36.3 0.0 1e-08 35.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|390937933|ref|YP_006401671.1| - 1.5e-06 28.0 0.0 1.3e-05 24.9 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|390937933|ref|YP_006401671.1| - 0.00083 19.5 0.0 0.0021 18.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 CbiQ PF02361.11 gi|390937934|ref|YP_006401672.1| - 6.7e-12 45.4 8.2 6.7e-12 45.4 5.7 1.4 1 1 0 1 1 1 1 Cobalt transport protein Picorna_P3A PF06363.6 gi|390937934|ref|YP_006401672.1| - 0.12 12.3 0.1 0.27 11.2 0.1 1.5 1 0 0 1 1 1 0 Picornaviridae P3A protein HlyIII PF03006.15 gi|390937934|ref|YP_006401672.1| - 1.4 8.2 8.8 0.024 14.0 1.0 1.8 2 1 0 2 2 2 0 Haemolysin-III related ABC_tran PF00005.22 gi|390937935|ref|YP_006401673.1| - 1.8e-39 135.2 0.0 1.2e-18 67.7 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|390937935|ref|YP_006401673.1| - 3.4e-28 99.4 11.0 5.9e-12 46.1 0.1 4.2 2 2 1 3 3 3 3 AAA domain SMC_N PF02463.14 gi|390937935|ref|YP_006401673.1| - 5.1e-15 55.3 0.5 0.0014 17.9 0.0 4.1 3 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|390937935|ref|YP_006401673.1| - 8.1e-13 48.1 0.4 0.0004 19.5 0.0 3.8 4 0 0 4 4 4 3 AAA ATPase domain AAA_29 PF13555.1 gi|390937935|ref|YP_006401673.1| - 1.1e-09 37.7 0.4 0.00013 21.4 0.0 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|390937935|ref|YP_006401673.1| - 1.5e-08 34.2 0.1 0.001 18.5 0.0 2.9 3 1 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|390937935|ref|YP_006401673.1| - 6.7e-07 29.5 0.9 0.0096 16.0 0.0 3.4 3 1 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|390937935|ref|YP_006401673.1| - 1.1e-06 29.1 0.3 0.0056 17.0 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|390937935|ref|YP_006401673.1| - 2.6e-06 27.3 0.2 0.00074 19.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|390937935|ref|YP_006401673.1| - 9.5e-06 25.7 0.6 0.014 15.3 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|390937935|ref|YP_006401673.1| - 1e-05 25.1 0.7 0.031 13.7 0.1 3.0 3 0 0 3 3 3 2 AAA-like domain NACHT PF05729.7 gi|390937935|ref|YP_006401673.1| - 1.9e-05 24.4 1.1 0.016 14.8 0.0 2.6 2 0 0 2 2 2 2 NACHT domain IstB_IS21 PF01695.12 gi|390937935|ref|YP_006401673.1| - 2e-05 24.1 0.5 0.67 9.3 0.0 3.4 3 0 0 3 3 3 1 IstB-like ATP binding protein MobB PF03205.9 gi|390937935|ref|YP_006401673.1| - 6.8e-05 22.5 0.7 0.0071 16.0 0.1 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|390937935|ref|YP_006401673.1| - 8.6e-05 23.3 4.5 0.0099 16.6 0.0 3.3 3 1 0 3 3 2 1 AAA domain T2SE PF00437.15 gi|390937935|ref|YP_006401673.1| - 9.9e-05 21.3 0.2 0.19 10.5 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_14 PF13173.1 gi|390937935|ref|YP_006401673.1| - 0.00012 21.9 0.5 0.066 13.1 0.0 3.7 3 2 1 4 4 3 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|390937935|ref|YP_006401673.1| - 0.00014 21.4 0.3 0.2 11.0 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF258 PF03193.11 gi|390937935|ref|YP_006401673.1| - 0.00018 20.7 0.1 0.011 14.9 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|390937935|ref|YP_006401673.1| - 0.00032 20.9 1.1 0.12 12.5 0.0 3.8 4 1 0 4 4 4 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|390937935|ref|YP_006401673.1| - 0.00051 19.6 0.1 0.052 13.1 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|390937935|ref|YP_006401673.1| - 0.00052 19.6 0.0 0.045 13.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|390937935|ref|YP_006401673.1| - 0.00054 20.2 0.6 0.27 11.5 0.0 3.3 4 0 0 4 4 3 1 AAA domain AAA_19 PF13245.1 gi|390937935|ref|YP_006401673.1| - 0.0007 19.3 0.1 0.34 10.7 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain Mg_chelatase PF01078.16 gi|390937935|ref|YP_006401673.1| - 0.001 18.2 0.4 0.23 10.6 0.0 2.6 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|390937935|ref|YP_006401673.1| - 0.0013 18.8 0.0 0.51 10.5 0.0 2.6 2 0 0 2 2 2 1 RNA helicase AAA_24 PF13479.1 gi|390937935|ref|YP_006401673.1| - 0.0017 18.0 2.0 1 8.9 0.1 2.3 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|390937935|ref|YP_006401673.1| - 0.0019 18.1 0.0 1.3 9.0 0.0 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|390937935|ref|YP_006401673.1| - 0.0032 17.4 0.2 0.021 14.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|390937935|ref|YP_006401673.1| - 0.0059 16.3 0.2 0.41 10.2 0.0 2.4 2 0 0 2 2 2 1 Archaeal ATPase AAA_5 PF07728.9 gi|390937935|ref|YP_006401673.1| - 0.0059 16.3 0.3 0.16 11.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|390937935|ref|YP_006401673.1| - 0.0098 15.0 0.2 0.92 8.5 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin Pox_A32 PF04665.7 gi|390937935|ref|YP_006401673.1| - 0.01 15.1 0.9 1.3 8.2 0.1 2.4 2 0 0 2 2 2 0 Poxvirus A32 protein ATP_bind_1 PF03029.12 gi|390937935|ref|YP_006401673.1| - 0.016 14.7 1.4 1.7 8.1 0.1 2.6 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|390937935|ref|YP_006401673.1| - 0.02 15.4 0.1 0.4 11.1 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein NTPase_1 PF03266.10 gi|390937935|ref|YP_006401673.1| - 0.03 14.0 0.7 2.4 7.8 0.1 2.7 2 1 0 2 2 2 0 NTPase MutS_V PF00488.16 gi|390937935|ref|YP_006401673.1| - 0.039 13.3 0.1 0.7 9.2 0.0 2.4 3 0 0 3 3 2 0 MutS domain V ArgK PF03308.11 gi|390937935|ref|YP_006401673.1| - 0.045 12.5 0.1 0.1 11.3 0.1 1.5 1 0 0 1 1 1 0 ArgK protein cobW PF02492.14 gi|390937935|ref|YP_006401673.1| - 0.046 13.1 3.3 0.61 9.5 0.3 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF1975 PF09318.5 gi|390937935|ref|YP_006401673.1| - 0.048 13.2 0.0 0.083 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1975) Dynamin_N PF00350.18 gi|390937935|ref|YP_006401673.1| - 0.055 13.2 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Dynamin family MMR_HSR1 PF01926.18 gi|390937935|ref|YP_006401673.1| - 0.063 13.2 0.3 0.31 10.9 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase KaiC PF06745.8 gi|390937935|ref|YP_006401673.1| - 0.07 12.2 0.6 3.6 6.6 0.1 2.3 2 0 0 2 2 2 0 KaiC SRP54 PF00448.17 gi|390937935|ref|YP_006401673.1| - 0.079 12.3 1.3 0.26 10.6 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SRPRB PF09439.5 gi|390937935|ref|YP_006401673.1| - 0.091 11.9 3.0 30 3.7 0.0 3.4 4 0 0 4 4 3 0 Signal recognition particle receptor beta subunit NADH_u_ox_C PF12853.2 gi|390937935|ref|YP_006401673.1| - 0.099 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit AAA_13 PF13166.1 gi|390937935|ref|YP_006401673.1| - 0.14 10.5 0.0 4.5 5.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain NB-ARC PF00931.17 gi|390937935|ref|YP_006401673.1| - 0.18 10.6 1.1 0.86 8.4 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain PGM_PMM_I PF02878.11 gi|390937936|ref|YP_006401674.1| - 3.9e-12 45.8 0.0 1.3e-11 44.0 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|390937936|ref|YP_006401674.1| - 0.00013 22.2 0.0 0.00029 21.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NTP_transferase PF00483.18 gi|390937937|ref|YP_006401675.1| - 2.6e-36 125.1 0.0 3.5e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|390937937|ref|YP_006401675.1| - 9.3e-12 45.3 0.0 1.3e-11 44.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|390937937|ref|YP_006401675.1| - 6.3e-07 28.6 9.8 8.8e-06 24.9 1.1 3.8 1 1 2 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|390937937|ref|YP_006401675.1| - 2.1e-06 27.2 0.7 4.7e-06 26.0 0.5 1.7 1 0 0 1 1 1 1 Hexapeptide repeat of succinyl-transferase DNA_pol_B_3 PF08408.5 gi|390937937|ref|YP_006401675.1| - 0.064 13.1 0.4 2.5 7.9 0.0 2.8 3 0 0 3 3 3 0 DNA polymerase family B viral insert CTP_transf_3 PF02348.14 gi|390937937|ref|YP_006401675.1| - 0.084 12.4 0.0 0.36 10.4 0.0 1.9 2 0 0 2 2 2 0 Cytidylyltransferase IspD PF01128.14 gi|390937937|ref|YP_006401675.1| - 0.16 11.4 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PLDc_2 PF13091.1 gi|390937938|ref|YP_006401676.1| - 1.8e-21 76.1 0.0 2.3e-21 75.8 0.0 1.1 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.17 gi|390937938|ref|YP_006401676.1| - 2.6e-05 23.8 0.5 0.00016 21.3 0.1 2.4 2 0 0 2 2 2 1 Phospholipase D Active site motif DUF1049 PF06305.6 gi|390937938|ref|YP_006401676.1| - 0.1 12.1 3.4 0.18 11.3 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) CitMHS PF03600.11 gi|390937939|ref|YP_006401677.1| - 2e-22 79.2 44.0 1.9e-21 76.0 25.1 2.5 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|390937939|ref|YP_006401677.1| - 6.4e-08 31.9 43.6 1.1e-07 31.1 30.2 1.3 1 0 0 1 1 1 1 Arsenical pump membrane protein Na_sulph_symp PF00939.14 gi|390937939|ref|YP_006401677.1| - 8.2 5.1 47.9 0.012 14.4 14.3 3.0 2 2 0 2 2 2 0 Sodium:sulfate symporter transmembrane region NTPase_I-T PF01931.13 gi|390937940|ref|YP_006401678.1| - 4.3e-39 133.9 0.0 4.9e-39 133.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 OTCace_N PF02729.16 gi|390937941|ref|YP_006401679.1| - 2e-40 137.7 0.0 3.1e-40 137.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|390937941|ref|YP_006401679.1| - 3e-36 124.6 0.0 8.5e-36 123.2 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RuvA_C PF07499.8 gi|390937941|ref|YP_006401679.1| - 0.11 12.7 0.1 0.22 11.6 0.1 1.5 1 0 0 1 1 1 0 RuvA, C-terminal domain PspA_IM30 PF04012.7 gi|390937942|ref|YP_006401680.1| - 0.012 14.9 0.3 0.013 14.8 0.2 1.0 1 0 0 1 1 1 0 PspA/IM30 family Band_7 PF01145.20 gi|390937942|ref|YP_006401680.1| - 0.1 12.4 0.1 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 SPFH domain / Band 7 family RPAP1_N PF08621.5 gi|390937942|ref|YP_006401680.1| - 0.39 10.3 3.6 1.3 8.7 0.5 2.1 2 0 0 2 2 2 0 RPAP1-like, N-terminal PGM_PMM_I PF02878.11 gi|390937943|ref|YP_006401681.1| - 3.1e-29 101.2 0.0 5.7e-29 100.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|390937943|ref|YP_006401681.1| - 4.2e-18 65.5 0.0 9.1e-18 64.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|390937943|ref|YP_006401681.1| - 1.7e-13 50.3 0.1 3.2e-13 49.4 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|390937943|ref|YP_006401681.1| - 3.7e-05 23.7 0.0 8.4e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Fe-S_assembly PF04384.8 gi|390937945|ref|YP_006401683.1| - 0.011 16.1 0.0 0.063 13.6 0.0 2.2 2 0 0 2 2 2 0 Iron-sulphur cluster assembly MMR_HSR1 PF01926.18 gi|390937945|ref|YP_006401683.1| - 0.015 15.2 0.2 0.08 12.9 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase ThiC PF01964.13 gi|390937946|ref|YP_006401684.1| - 1.7e-167 557.2 0.0 1.9e-167 557.0 0.0 1.0 1 0 0 1 1 1 1 ThiC family ETF PF01012.16 gi|390937946|ref|YP_006401684.1| - 0.032 13.9 1.0 0.86 9.2 0.0 2.4 2 0 0 2 2 2 0 Electron transfer flavoprotein domain Aminotran_3 PF00202.16 gi|390937948|ref|YP_006401686.1| - 5.2e-96 321.4 0.0 6.2e-96 321.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Radical_SAM PF04055.16 gi|390937949|ref|YP_006401687.1| - 2.7e-26 92.7 0.2 7.1e-26 91.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|390937949|ref|YP_006401687.1| - 2e-06 27.7 0.1 9e-06 25.6 0.1 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|390937949|ref|YP_006401687.1| - 0.051 13.6 0.0 0.2 11.8 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF763 PF05559.6 gi|390937950|ref|YP_006401688.1| - 1.6e-102 342.7 0.0 1.9e-102 342.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH_3 PF12836.2 gi|390937950|ref|YP_006401688.1| - 0.15 12.0 0.3 1.8 8.5 0.1 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif Turandot PF07240.6 gi|390937950|ref|YP_006401688.1| - 0.15 11.5 0.3 9.8 5.7 0.0 2.6 2 0 0 2 2 2 0 Stress-inducible humoral factor Turandot Fe-ADH PF00465.14 gi|390937951|ref|YP_006401689.1| - 1.3e-86 290.5 0.2 1.6e-86 290.2 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|390937951|ref|YP_006401689.1| - 4e-17 62.3 2.1 3.9e-12 46.0 0.1 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|390937951|ref|YP_006401689.1| - 0.0042 16.0 0.4 0.02 13.8 0.0 2.0 2 0 0 2 2 2 1 3-dehydroquinate synthase Glyco_trans_2_3 PF13632.1 gi|390937952|ref|YP_006401690.1| - 9.1e-23 80.9 0.1 1.4e-22 80.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.1 gi|390937952|ref|YP_006401690.1| - 7.1e-21 75.0 0.0 8.8e-21 74.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|390937952|ref|YP_006401690.1| - 0.00029 20.1 0.0 0.00082 18.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|390937952|ref|YP_006401690.1| - 0.026 14.1 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 SH3_3 PF08239.6 gi|390937954|ref|YP_006401692.1| - 0.035 14.2 1.9 0.073 13.2 1.3 1.4 1 0 0 1 1 1 0 Bacterial SH3 domain GHMP_kinases_N PF00288.21 gi|390937955|ref|YP_006401693.1| - 3.4e-20 71.8 0.1 5.9e-20 71.1 0.1 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|390937955|ref|YP_006401693.1| - 2.8e-07 30.6 0.3 3.3e-06 27.1 0.1 2.4 2 0 0 2 2 2 1 GHMP kinases C terminal ParA PF10609.4 gi|390937956|ref|YP_006401694.1| - 6.3e-29 99.6 0.1 1e-28 98.9 0.1 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|390937956|ref|YP_006401694.1| - 8.1e-16 58.0 0.1 1.2e-15 57.4 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|390937956|ref|YP_006401694.1| - 1.5e-07 30.8 1.8 3.8e-07 29.4 0.5 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|390937956|ref|YP_006401694.1| - 3.2e-07 30.4 0.0 2.8e-06 27.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|390937956|ref|YP_006401694.1| - 1.9e-05 23.9 0.2 0.0053 15.9 0.1 2.4 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|390937956|ref|YP_006401694.1| - 0.00028 20.0 0.0 0.00059 18.9 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|390937956|ref|YP_006401694.1| - 0.0016 18.0 0.0 0.56 9.7 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|390937956|ref|YP_006401694.1| - 0.002 17.6 0.0 0.0025 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|390937956|ref|YP_006401694.1| - 0.0097 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|390937956|ref|YP_006401694.1| - 0.037 13.4 0.2 0.1 12.0 0.1 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|390937956|ref|YP_006401694.1| - 0.05 12.7 0.1 0.076 12.1 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin PhoH PF02562.11 gi|390937956|ref|YP_006401694.1| - 0.051 12.7 0.2 0.14 11.3 0.1 1.7 2 0 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.17 gi|390937956|ref|YP_006401694.1| - 0.064 12.0 0.1 0.09 11.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain UPF0079 PF02367.12 gi|390937956|ref|YP_006401694.1| - 0.082 12.5 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Snf7 PF03357.16 gi|390937958|ref|YP_006401696.1| - 0.00078 18.8 2.0 0.0012 18.3 1.3 1.4 1 1 0 1 1 1 1 Snf7 RPW8 PF05659.6 gi|390937958|ref|YP_006401696.1| - 0.014 14.9 2.2 0.85 9.1 0.5 2.9 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Ubie_methyltran PF01209.13 gi|390937958|ref|YP_006401696.1| - 0.014 14.5 0.1 0.016 14.3 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family LOH1CR12 PF10158.4 gi|390937958|ref|YP_006401696.1| - 0.066 13.0 0.2 0.18 11.6 0.1 1.8 1 1 0 1 1 1 0 Tumour suppressor protein Uso1_p115_C PF04871.8 gi|390937958|ref|YP_006401696.1| - 0.56 10.1 4.4 0.61 10.0 0.2 2.4 1 1 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region STT3 PF02516.9 gi|390937959|ref|YP_006401697.1| - 1.1e-19 70.8 40.1 1.9e-19 69.9 27.8 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit OTCace PF00185.19 gi|390937960|ref|YP_006401698.1| - 1e-54 184.7 0.0 3e-54 183.1 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|390937960|ref|YP_006401698.1| - 1.5e-49 167.3 0.3 5.7e-49 165.4 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DUF711 PF05167.7 gi|390937961|ref|YP_006401699.1| - 1.2e-44 152.6 0.0 7.5e-44 150.0 0.0 1.8 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) UPF0147 PF03685.8 gi|390937962|ref|YP_006401700.1| - 3.2e-34 116.6 0.5 3.5e-34 116.5 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|390937962|ref|YP_006401700.1| - 0.039 14.0 0.3 6 7.0 0.1 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0253) HEAT_PBS PF03130.11 gi|390937962|ref|YP_006401700.1| - 0.07 13.6 0.3 0.25 11.8 0.2 2.1 2 1 0 2 2 2 0 PBS lyase HEAT-like repeat Auto_anti-p27 PF06677.7 gi|390937963|ref|YP_006401701.1| - 2e-13 49.8 0.6 3e-13 49.2 0.4 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rieske PF00355.21 gi|390937963|ref|YP_006401701.1| - 0.024 14.2 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain Thymidylate_kin PF02223.12 gi|390937964|ref|YP_006401702.1| - 3.6e-43 147.1 0.0 4.1e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_17 PF13207.1 gi|390937964|ref|YP_006401702.1| - 4.1e-06 27.6 0.0 8.1e-06 26.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|390937964|ref|YP_006401702.1| - 1.8e-05 24.7 0.0 2.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|390937964|ref|YP_006401702.1| - 2.9e-05 24.3 0.0 6.9e-05 23.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|390937964|ref|YP_006401702.1| - 0.00021 21.1 0.0 0.00027 20.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|390937964|ref|YP_006401702.1| - 0.00029 20.5 0.0 0.0007 19.2 0.0 1.6 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_22 PF13401.1 gi|390937964|ref|YP_006401702.1| - 0.00089 19.3 0.0 0.0014 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|390937964|ref|YP_006401702.1| - 0.0011 18.6 0.0 0.0031 17.1 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|390937964|ref|YP_006401702.1| - 0.0012 18.8 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain dNK PF01712.14 gi|390937964|ref|YP_006401702.1| - 0.0029 17.5 2.2 0.23 11.3 0.2 3.3 1 1 2 3 3 3 1 Deoxynucleoside kinase Arf PF00025.16 gi|390937964|ref|YP_006401702.1| - 0.0032 16.7 0.0 0.0048 16.1 0.0 1.3 1 0 0 1 1 1 1 ADP-ribosylation factor family PPK2 PF03976.9 gi|390937964|ref|YP_006401702.1| - 0.0046 16.2 0.0 0.0094 15.2 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) NACHT PF05729.7 gi|390937964|ref|YP_006401702.1| - 0.0092 15.6 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain KTI12 PF08433.5 gi|390937964|ref|YP_006401702.1| - 0.032 13.4 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PRK PF00485.13 gi|390937964|ref|YP_006401702.1| - 0.033 13.7 0.0 0.11 12.0 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.9 gi|390937964|ref|YP_006401702.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|390937964|ref|YP_006401702.1| - 0.084 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain SKI PF01202.17 gi|390937964|ref|YP_006401702.1| - 0.091 12.6 0.0 3.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Shikimate kinase Zeta_toxin PF06414.7 gi|390937964|ref|YP_006401702.1| - 0.095 11.7 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|390937964|ref|YP_006401702.1| - 0.13 12.4 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF126 PF01989.11 gi|390937965|ref|YP_006401703.1| - 1.9e-26 91.5 0.1 4.8e-26 90.2 0.0 1.7 1 1 1 2 2 2 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|390937966|ref|YP_006401704.1| - 6.2e-100 334.5 0.0 7e-100 334.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.11 gi|390937967|ref|YP_006401705.1| - 1.8e-82 276.9 0.0 2.3e-82 276.6 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MobB PF03205.9 gi|390937968|ref|YP_006401706.1| - 9.5e-09 35.0 0.1 2.3e-07 30.6 0.0 2.7 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|390937968|ref|YP_006401706.1| - 3.1e-05 23.4 0.0 6.4e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Clp1 PF06807.9 gi|390937968|ref|YP_006401706.1| - 0.029 14.1 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Pre-mRNA cleavage complex II protein Clp1 GTP_EFTU PF00009.22 gi|390937968|ref|YP_006401706.1| - 0.083 12.3 0.3 0.2 11.0 0.1 1.6 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|390937968|ref|YP_006401706.1| - 0.12 12.9 0.1 0.29 11.6 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|390937968|ref|YP_006401706.1| - 0.13 11.7 0.1 0.27 10.7 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF460 PF04312.8 gi|390937969|ref|YP_006401707.1| - 0.084 12.4 0.3 0.38 10.2 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF460) KaiC PF06745.8 gi|390937970|ref|YP_006401708.1| - 2.9e-06 26.5 0.0 0.00038 19.6 0.0 2.2 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|390937970|ref|YP_006401708.1| - 5.7e-06 25.8 0.0 1.6e-05 24.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|390937970|ref|YP_006401708.1| - 0.00061 19.4 0.0 0.00091 18.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|390937970|ref|YP_006401708.1| - 0.0018 18.4 0.0 0.0033 17.6 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|390937970|ref|YP_006401708.1| - 0.013 16.2 0.1 0.019 15.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|390937970|ref|YP_006401708.1| - 0.016 15.0 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|390937970|ref|YP_006401708.1| - 0.041 13.8 0.0 0.066 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|390937970|ref|YP_006401708.1| - 0.045 13.4 0.1 0.065 12.9 0.1 1.3 1 1 0 1 1 1 0 Archaeal ATPase IstB_IS21 PF01695.12 gi|390937970|ref|YP_006401708.1| - 0.069 12.5 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Viral_helicase1 PF01443.13 gi|390937970|ref|YP_006401708.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF258 PF03193.11 gi|390937970|ref|YP_006401708.1| - 0.13 11.4 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|390937970|ref|YP_006401708.1| - 0.15 10.9 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|390937970|ref|YP_006401708.1| - 0.16 12.2 0.0 0.31 11.3 0.0 1.3 1 1 0 1 1 1 0 ABC transporter Kinesin PF00225.18 gi|390937970|ref|YP_006401708.1| - 0.17 10.5 0.0 0.22 10.1 0.0 1.2 1 0 0 1 1 1 0 Kinesin motor domain DUF46 PF01864.12 gi|390937971|ref|YP_006401709.1| - 4.1e-31 108.1 4.2 1.4e-30 106.4 2.9 1.7 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|390937971|ref|YP_006401709.1| - 1.8e-07 31.0 0.5 1.8e-07 31.0 0.3 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family UPF0051 PF01458.12 gi|390937972|ref|YP_006401710.1| - 8.1e-46 156.3 0.2 1.1e-45 155.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UBA PF00627.26 gi|390937972|ref|YP_006401710.1| - 0.026 14.3 0.2 0.28 11.0 0.0 2.7 3 0 0 3 3 3 0 UBA/TS-N domain Ribosom_S12_S23 PF00164.20 gi|390937972|ref|YP_006401710.1| - 0.043 13.2 0.0 0.082 12.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S12/S23 ABC_tran PF00005.22 gi|390937973|ref|YP_006401711.1| - 1e-20 74.4 0.0 1.3e-20 74.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390937973|ref|YP_006401711.1| - 4.2e-13 49.8 3.6 9.2e-12 45.5 2.5 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|390937973|ref|YP_006401711.1| - 4.3e-08 32.6 0.1 0.0051 16.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|390937973|ref|YP_006401711.1| - 9.1e-06 25.1 0.0 0.00019 20.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|390937973|ref|YP_006401711.1| - 8e-05 22.0 0.0 0.00015 21.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|390937973|ref|YP_006401711.1| - 0.00029 21.2 0.1 0.00054 20.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|390937973|ref|YP_006401711.1| - 0.00069 19.0 0.0 0.04 13.3 0.0 2.1 2 0 0 2 2 2 1 MutS domain V DUF258 PF03193.11 gi|390937973|ref|YP_006401711.1| - 0.011 14.9 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|390937973|ref|YP_006401711.1| - 0.017 14.7 0.4 0.039 13.6 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.1 gi|390937973|ref|YP_006401711.1| - 0.019 14.8 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|390937973|ref|YP_006401711.1| - 0.022 13.3 0.1 0.032 12.8 0.0 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|390937973|ref|YP_006401711.1| - 0.03 14.4 0.1 0.091 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|390937973|ref|YP_006401711.1| - 0.032 15.0 0.2 0.047 14.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|390937973|ref|YP_006401711.1| - 0.038 12.6 0.0 0.055 12.1 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_13 PF13166.1 gi|390937973|ref|YP_006401711.1| - 0.046 12.1 0.4 0.68 8.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|390937973|ref|YP_006401711.1| - 0.087 12.2 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain Arch_ATPase PF01637.13 gi|390937973|ref|YP_006401711.1| - 0.094 12.3 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_16 PF13191.1 gi|390937973|ref|YP_006401711.1| - 0.096 12.6 0.1 0.11 12.5 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|390937973|ref|YP_006401711.1| - 0.13 11.2 0.0 0.23 10.4 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.14 gi|390937973|ref|YP_006401711.1| - 0.17 11.2 0.8 0.33 10.3 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DEAD_assoc PF08494.6 gi|390937974|ref|YP_006401712.1| - 1.9e-51 174.4 0.0 4.1e-51 173.3 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|390937974|ref|YP_006401712.1| - 7.8e-30 103.5 0.0 5.4e-29 100.8 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|390937974|ref|YP_006401712.1| - 3.7e-14 52.3 0.0 3.1e-13 49.3 0.0 2.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|390937974|ref|YP_006401712.1| - 8.3e-07 29.0 0.0 2.4e-06 27.4 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA PF00004.24 gi|390937974|ref|YP_006401712.1| - 0.018 15.2 4.4 2.4 8.3 0.7 3.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SNF2_N PF00176.18 gi|390937974|ref|YP_006401712.1| - 0.11 11.3 0.0 0.32 9.7 0.0 1.9 1 1 0 1 1 1 0 SNF2 family N-terminal domain Glyco_tranf_2_3 PF13641.1 gi|390937975|ref|YP_006401713.1| - 1.1e-22 80.9 0.0 1.7e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|390937975|ref|YP_006401713.1| - 5e-14 52.4 8.4 5e-14 52.4 5.9 2.3 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|390937975|ref|YP_006401713.1| - 1.1e-10 41.4 0.0 1.7e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|390937975|ref|YP_006401713.1| - 3.1e-05 23.3 0.1 0.00024 20.4 0.0 2.2 1 1 0 2 2 2 1 Glycosyl transferase family 21 Lactamase_B_3 PF13483.1 gi|390937976|ref|YP_006401714.1| - 1.4e-37 128.9 0.3 2e-37 128.4 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|390937976|ref|YP_006401714.1| - 1.5e-13 50.7 1.0 8.5e-12 45.0 0.7 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|390937976|ref|YP_006401714.1| - 0.13 11.8 6.7 1 9.0 3.0 2.2 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily zf-Di19 PF05605.7 gi|390937978|ref|YP_006401716.1| - 0.12 12.5 0.6 7.8 6.7 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding PfkB PF00294.19 gi|390937979|ref|YP_006401717.1| - 1.8e-06 27.3 0.0 2.4e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Thioredoxin_3 PF13192.1 gi|390937980|ref|YP_006401718.1| - 7.7e-08 32.0 0.0 1.1e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain PYNP_C PF07831.8 gi|390937981|ref|YP_006401719.1| - 2.6e-14 52.4 0.0 7e-14 51.0 0.0 1.8 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|390937981|ref|YP_006401719.1| - 1.9e-11 43.8 3.8 5.3e-10 39.1 0.8 3.2 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|390937981|ref|YP_006401719.1| - 2.1e-10 40.0 0.4 5.9e-10 38.5 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain CDC48_N PF02359.13 gi|390937981|ref|YP_006401719.1| - 1.2e-07 31.5 0.1 2.5e-07 30.5 0.1 1.5 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Molydop_binding PF01568.16 gi|390937981|ref|YP_006401719.1| - 1.5e-05 24.7 0.9 0.00021 21.0 0.0 2.4 2 1 1 3 3 3 2 Molydopterin dinucleotide binding domain Biotin_lipoyl_2 PF13533.1 gi|390937981|ref|YP_006401719.1| - 0.019 14.6 0.0 0.16 11.6 0.0 2.6 2 1 0 2 2 2 0 Biotin-lipoyl like DUF2254 PF10011.4 gi|390937981|ref|YP_006401719.1| - 0.032 12.7 0.0 0.053 11.9 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) AstA PF04958.7 gi|390937981|ref|YP_006401719.1| - 0.16 10.3 0.0 0.24 9.7 0.0 1.3 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit FAD_oxidored PF12831.2 gi|390937982|ref|YP_006401720.1| - 1.1e-10 41.2 0.1 1.9e-10 40.4 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|390937982|ref|YP_006401720.1| - 1.2e-10 40.8 2.9 3.9e-06 25.9 0.5 2.9 3 1 1 4 4 4 2 FAD binding domain Lycopene_cycl PF05834.7 gi|390937982|ref|YP_006401720.1| - 9.7e-10 37.8 0.0 1.4e-07 30.8 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|390937982|ref|YP_006401720.1| - 2.9e-08 33.0 4.2 0.0001 21.3 0.6 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|390937982|ref|YP_006401720.1| - 8.9e-08 31.5 3.8 5.9e-05 22.2 0.2 3.3 3 1 0 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|390937982|ref|YP_006401720.1| - 5.2e-07 29.7 0.5 8e-06 25.8 0.3 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|390937982|ref|YP_006401720.1| - 6.2e-07 29.3 0.7 0.0026 17.7 0.3 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|390937982|ref|YP_006401720.1| - 1e-05 24.7 0.6 2.2e-05 23.6 0.4 1.6 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|390937982|ref|YP_006401720.1| - 1.6e-05 23.5 0.1 6.6e-05 21.5 0.0 2.0 3 0 0 3 3 3 1 HI0933-like protein Trp_halogenase PF04820.9 gi|390937982|ref|YP_006401720.1| - 2e-05 23.4 1.0 0.027 13.1 0.0 2.7 2 1 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|390937982|ref|YP_006401720.1| - 4.7e-05 22.4 0.5 7e-05 21.8 0.3 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|390937982|ref|YP_006401720.1| - 0.0015 18.9 0.7 0.12 12.7 0.1 3.1 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|390937982|ref|YP_006401720.1| - 0.021 14.4 0.1 0.036 13.7 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|390937982|ref|YP_006401720.1| - 0.068 13.2 0.1 0.16 12.0 0.1 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|390937982|ref|YP_006401720.1| - 0.16 11.3 0.7 0.38 10.0 0.1 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF429 PF04250.8 gi|390937983|ref|YP_006401721.1| - 1.4e-21 76.7 0.0 5.4e-21 74.8 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DHH PF01368.15 gi|390937984|ref|YP_006401722.1| - 2.6e-07 30.4 0.0 4e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|390937984|ref|YP_006401722.1| - 8.2e-05 22.2 0.2 0.00017 21.1 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain T2SE PF00437.15 gi|390937986|ref|YP_006401724.1| - 2.3e-51 174.2 0.0 3.7e-51 173.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|390937986|ref|YP_006401724.1| - 8.8e-05 22.8 0.0 0.00024 21.3 0.0 1.8 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|390937986|ref|YP_006401724.1| - 0.00071 19.0 0.2 0.002 17.5 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|390937986|ref|YP_006401724.1| - 0.0066 16.1 0.1 0.029 14.1 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_28 PF13521.1 gi|390937986|ref|YP_006401724.1| - 0.0083 16.0 0.6 0.036 14.0 0.1 2.3 2 0 0 2 2 2 1 AAA domain PIF1 PF05970.9 gi|390937986|ref|YP_006401724.1| - 0.011 14.7 0.1 0.018 14.0 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase FtsK_SpoIIIE PF01580.13 gi|390937986|ref|YP_006401724.1| - 0.012 15.0 0.1 0.048 13.1 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family ATP-synt_ab PF00006.20 gi|390937986|ref|YP_006401724.1| - 0.016 14.6 0.4 0.15 11.5 0.3 2.1 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|390937986|ref|YP_006401724.1| - 0.017 14.7 0.1 0.033 13.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|390937986|ref|YP_006401724.1| - 0.021 15.1 1.2 0.055 13.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|390937986|ref|YP_006401724.1| - 0.025 13.1 0.2 0.14 10.7 0.5 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF258 PF03193.11 gi|390937986|ref|YP_006401724.1| - 0.04 13.0 0.0 0.078 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|390937986|ref|YP_006401724.1| - 0.069 12.5 0.1 0.21 10.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|390937986|ref|YP_006401724.1| - 0.074 12.7 0.2 0.28 10.8 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|390937986|ref|YP_006401724.1| - 0.27 11.5 4.7 0.48 10.7 0.0 3.1 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|390937986|ref|YP_006401724.1| - 0.65 10.8 3.3 0.78 10.5 0.0 2.6 3 0 0 3 3 2 0 AAA domain T2SF PF00482.18 gi|390937987|ref|YP_006401725.1| - 1e-10 41.5 8.3 3.5e-08 33.3 0.1 4.6 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F DUF1628 PF07790.6 gi|390937988|ref|YP_006401726.1| - 0.0037 17.9 0.5 0.0082 16.8 0.4 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF3793 PF12672.2 gi|390937988|ref|YP_006401726.1| - 0.012 15.2 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3793) Oxidored_q1_N PF00662.15 gi|390937988|ref|YP_006401726.1| - 4.8 6.8 7.7 0.36 10.4 1.7 1.8 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2341 PF10102.4 gi|390937990|ref|YP_006401728.1| - 1.9e-17 63.1 1.9 4.4e-17 62.0 0.1 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF2341) HbrB PF08539.6 gi|390937993|ref|YP_006401731.1| - 0.066 13.0 0.0 0.14 11.9 0.0 1.6 1 1 0 1 1 1 0 HbrB-like OpgC_C PF10129.4 gi|390937993|ref|YP_006401731.1| - 0.072 11.7 0.1 0.082 11.5 0.1 1.0 1 0 0 1 1 1 0 OpgC protein DUF3290 PF11694.3 gi|390937995|ref|YP_006401733.1| - 0.73 9.5 4.4 0.22 11.2 0.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) FA_desaturase PF00487.19 gi|390937995|ref|YP_006401733.1| - 0.94 8.8 2.8 1.6 8.1 2.0 1.3 1 0 0 1 1 1 0 Fatty acid desaturase Rab5ip PF07019.7 gi|390937995|ref|YP_006401733.1| - 4.8 7.3 8.4 2.2 8.4 3.1 2.2 1 1 1 2 2 2 0 Rab5-interacting protein (Rab5ip) DZR PF12773.2 gi|390937996|ref|YP_006401734.1| - 0.031 14.0 0.2 0.053 13.3 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF2258 PF10015.4 gi|390937996|ref|YP_006401734.1| - 0.046 13.5 0.0 0.15 11.9 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2258) OrfB_Zn_ribbon PF07282.6 gi|390937996|ref|YP_006401734.1| - 0.047 13.3 1.5 1.5 8.5 0.2 2.9 3 0 0 3 3 3 0 Putative transposase DNA-binding domain PhoU PF01895.14 gi|390937996|ref|YP_006401734.1| - 0.11 12.9 0.8 5.5 7.5 0.0 3.4 2 1 1 3 3 3 0 PhoU domain DNA_RNApol_7kD PF03604.8 gi|390937996|ref|YP_006401734.1| - 0.13 11.7 2.5 0.91 9.0 2.0 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|390937996|ref|YP_006401734.1| - 0.31 10.3 3.7 1.2 8.4 2.6 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|390937996|ref|YP_006401734.1| - 0.71 9.4 5.2 6 6.4 3.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain TPR_12 PF13424.1 gi|390937997|ref|YP_006401735.1| - 0.00021 21.1 1.0 1.8 8.5 0.0 3.6 3 0 0 3 3 3 1 Tetratricopeptide repeat MIT PF04212.13 gi|390937997|ref|YP_006401735.1| - 0.0077 16.0 8.2 0.47 10.3 0.1 3.5 3 1 0 3 3 3 2 MIT (microtubule interacting and transport) domain DUF1657 PF07870.6 gi|390937997|ref|YP_006401735.1| - 0.019 14.6 0.5 0.019 14.6 0.4 2.8 4 0 0 4 4 4 0 Protein of unknown function (DUF1657) zf-FCS PF06467.9 gi|390937997|ref|YP_006401735.1| - 0.02 14.5 0.5 0.073 12.7 0.1 2.1 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif TPR_8 PF13181.1 gi|390937997|ref|YP_006401735.1| - 0.021 14.5 10.4 0.053 13.3 0.3 3.9 3 0 0 3 3 3 0 Tetratricopeptide repeat Rad50_zn_hook PF04423.9 gi|390937997|ref|YP_006401735.1| - 0.045 13.2 0.0 0.045 13.2 0.0 2.8 3 0 0 3 3 3 0 Rad50 zinc hook motif TPR_14 PF13428.1 gi|390937997|ref|YP_006401735.1| - 0.046 14.3 2.5 6.5 7.6 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|390937997|ref|YP_006401735.1| - 0.12 12.4 10.3 0.8 9.7 0.2 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|390937997|ref|YP_006401735.1| - 0.79 9.4 10.0 1.6 8.4 0.3 3.5 3 0 0 3 3 3 0 TPR repeat TPR_6 PF13174.1 gi|390937997|ref|YP_006401735.1| - 3.5 8.2 6.0 1.2e+02 3.5 0.0 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|390937997|ref|YP_006401735.1| - 4.7 6.9 10.7 1.8 8.3 0.3 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat Band_7_1 PF13421.1 gi|390937998|ref|YP_006401736.1| - 3.2e-35 121.5 0.0 4.8e-35 120.9 0.0 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.20 gi|390937998|ref|YP_006401736.1| - 1.4e-14 54.4 0.0 2.2e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family SHOCT PF09851.4 gi|390937998|ref|YP_006401736.1| - 8.8e-09 34.5 7.4 1.7e-08 33.6 5.1 1.5 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|390937998|ref|YP_006401736.1| - 0.00029 20.5 1.3 0.0016 18.2 0.2 2.2 2 0 0 2 2 2 1 Gas vesicle protein G DMAP_binding PF06464.6 gi|390937998|ref|YP_006401736.1| - 0.0034 17.9 3.2 0.006 17.1 2.2 1.4 1 0 0 1 1 1 1 DMAP1-binding Domain TBCA PF02970.11 gi|390937999|ref|YP_006401737.1| - 0.064 13.3 1.5 0.32 11.1 0.0 2.6 2 2 1 3 3 3 0 Tubulin binding cofactor A PIN PF01850.16 gi|390938000|ref|YP_006401738.1| - 3e-14 53.3 0.0 3.3e-14 53.2 0.0 1.0 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|390938001|ref|YP_006401739.1| - 8e-11 41.4 1.4 1.2e-10 40.8 0.9 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PalH PF08733.5 gi|390938002|ref|YP_006401740.1| - 1.3 7.7 6.3 2.6 6.8 4.4 1.6 1 1 0 1 1 1 0 PalH/RIM21 LMBR1 PF04791.11 gi|390938002|ref|YP_006401740.1| - 2.3 6.7 8.5 2.9 6.3 5.9 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Claudin_2 PF13903.1 gi|390938004|ref|YP_006401742.1| - 0.11 12.2 1.5 0.12 12.0 1.0 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3917 PF13055.1 gi|390938004|ref|YP_006401742.1| - 0.35 11.1 4.0 0.45 10.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3917) IncA PF04156.9 gi|390938004|ref|YP_006401742.1| - 0.47 10.0 3.1 21 4.6 0.0 2.1 2 0 0 2 2 2 0 IncA protein FixQ PF05545.6 gi|390938004|ref|YP_006401742.1| - 2.5 7.8 4.6 15 5.3 0.1 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ TrmB PF01978.14 gi|390938005|ref|YP_006401743.1| - 0.00015 21.3 0.1 0.00053 19.6 0.1 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|390938005|ref|YP_006401743.1| - 0.00063 19.1 0.1 0.0013 18.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|390938005|ref|YP_006401743.1| - 0.0013 18.8 0.0 0.0026 17.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|390938005|ref|YP_006401743.1| - 0.021 14.5 0.0 0.05 13.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_29 PF13551.1 gi|390938005|ref|YP_006401743.1| - 0.023 14.8 0.2 0.35 11.0 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix ALIX_LYPXL_bnd PF13949.1 gi|390938005|ref|YP_006401743.1| - 0.023 13.6 1.0 0.036 13.0 0.7 1.3 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV DUF3877 PF12993.2 gi|390938005|ref|YP_006401743.1| - 0.034 13.7 0.9 0.54 9.8 0.7 2.1 1 1 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3877) zf-C4H2 PF10146.4 gi|390938005|ref|YP_006401743.1| - 0.063 13.2 4.8 0.084 12.8 3.3 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein HTH_41 PF14502.1 gi|390938005|ref|YP_006401743.1| - 0.1 12.2 0.0 0.31 10.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain KIAA1430 PF13879.1 gi|390938005|ref|YP_006401743.1| - 1.6 9.2 9.0 3.8 8.0 2.3 2.4 2 0 0 2 2 2 0 KIAA1430 homologue AAA PF00004.24 gi|390938006|ref|YP_006401744.1| - 1.2e-33 116.0 0.0 2.1e-33 115.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.13 gi|390938006|ref|YP_006401744.1| - 5.3e-14 51.8 1.4 1.5e-13 50.4 1.0 1.8 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_17 PF13207.1 gi|390938006|ref|YP_006401744.1| - 1.6e-06 28.9 0.1 1.5e-05 25.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|390938006|ref|YP_006401744.1| - 1.9e-05 24.8 0.0 0.00012 22.2 0.0 2.3 2 1 0 2 2 1 1 AAA domain AAA_2 PF07724.9 gi|390938006|ref|YP_006401744.1| - 3.4e-05 23.8 0.0 0.0001 22.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|390938006|ref|YP_006401744.1| - 5.4e-05 22.3 0.0 0.00014 21.0 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|390938006|ref|YP_006401744.1| - 5.5e-05 23.0 0.0 0.00012 22.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|390938006|ref|YP_006401744.1| - 8.3e-05 22.8 0.4 0.00041 20.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain Vps4_C PF09336.5 gi|390938006|ref|YP_006401744.1| - 0.00013 21.8 0.0 0.00029 20.6 0.0 1.7 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain AAA_25 PF13481.1 gi|390938006|ref|YP_006401744.1| - 0.00017 21.0 0.0 0.23 10.8 0.1 2.3 1 1 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.13 gi|390938006|ref|YP_006401744.1| - 0.00018 21.1 0.0 0.00042 19.9 0.0 1.6 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.12 gi|390938006|ref|YP_006401744.1| - 0.00023 20.6 0.0 0.00038 19.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|390938006|ref|YP_006401744.1| - 0.00037 19.3 0.7 0.003 16.3 0.1 2.3 2 1 1 3 3 3 1 TIP49 C-terminus TPR_11 PF13414.1 gi|390938006|ref|YP_006401744.1| - 0.0007 19.1 2.5 0.0009 18.8 0.8 1.9 2 0 0 2 2 1 1 TPR repeat AAA_5 PF07728.9 gi|390938006|ref|YP_006401744.1| - 0.00082 19.1 0.0 0.0033 17.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|390938006|ref|YP_006401744.1| - 0.0016 18.4 0.1 0.97 9.3 0.0 3.0 1 1 2 3 3 3 1 AAA ATPase domain TPR_1 PF00515.23 gi|390938006|ref|YP_006401744.1| - 0.0019 17.7 1.9 0.0039 16.7 0.4 2.3 2 0 0 2 2 1 1 Tetratricopeptide repeat AAA_14 PF13173.1 gi|390938006|ref|YP_006401744.1| - 0.0026 17.6 0.0 0.0066 16.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|390938006|ref|YP_006401744.1| - 0.0074 16.4 0.0 0.027 14.6 0.0 2.0 2 0 0 2 2 1 1 RNA helicase AAA_28 PF13521.1 gi|390938006|ref|YP_006401744.1| - 0.0081 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|390938006|ref|YP_006401744.1| - 0.0084 15.6 0.0 0.094 12.1 0.0 2.0 1 1 1 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain TPR_6 PF13174.1 gi|390938006|ref|YP_006401744.1| - 0.0084 16.4 1.7 1.4 9.5 0.3 3.9 3 1 0 3 3 2 1 Tetratricopeptide repeat Zeta_toxin PF06414.7 gi|390938006|ref|YP_006401744.1| - 0.0098 15.0 0.0 0.032 13.3 0.0 1.9 1 1 0 1 1 1 1 Zeta toxin Rad17 PF03215.10 gi|390938006|ref|YP_006401744.1| - 0.011 14.4 0.0 0.016 13.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein TPR_2 PF07719.12 gi|390938006|ref|YP_006401744.1| - 0.014 15.2 1.4 0.055 13.4 0.1 2.7 2 1 1 3 3 3 0 Tetratricopeptide repeat AAA_10 PF12846.2 gi|390938006|ref|YP_006401744.1| - 0.015 14.7 1.2 13 5.1 0.1 3.9 4 1 0 4 4 4 0 AAA-like domain DUF815 PF05673.8 gi|390938006|ref|YP_006401744.1| - 0.018 13.9 0.0 0.034 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|390938006|ref|YP_006401744.1| - 0.019 14.6 0.1 0.042 13.6 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|390938006|ref|YP_006401744.1| - 0.021 14.5 4.0 1.7 8.2 0.0 3.0 3 1 1 4 4 3 0 Archaeal ATPase KTI12 PF08433.5 gi|390938006|ref|YP_006401744.1| - 0.036 13.2 0.1 7.1 5.7 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 TPR_12 PF13424.1 gi|390938006|ref|YP_006401744.1| - 0.039 13.8 0.1 0.11 12.3 0.1 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat IPT PF01745.11 gi|390938006|ref|YP_006401744.1| - 0.06 12.5 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase Mg_chelatase PF01078.16 gi|390938006|ref|YP_006401744.1| - 0.097 11.8 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TPR_7 PF13176.1 gi|390938006|ref|YP_006401744.1| - 0.11 12.4 0.6 1.4 8.9 0.0 2.9 3 0 0 3 3 2 0 Tetratricopeptide repeat Sigma54_activ_2 PF14532.1 gi|390938006|ref|YP_006401744.1| - 0.13 12.3 0.0 0.67 9.9 0.0 2.2 3 0 0 3 3 1 0 Sigma-54 interaction domain Prolactin_RP PF15172.1 gi|390938006|ref|YP_006401744.1| - 0.14 11.4 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 Prolactin-releasing peptide NACHT PF05729.7 gi|390938006|ref|YP_006401744.1| - 0.14 11.7 0.2 2.3 7.8 0.0 2.5 2 1 1 3 3 2 0 NACHT domain TPR_8 PF13181.1 gi|390938006|ref|YP_006401744.1| - 0.29 10.9 4.6 0.28 11.0 0.3 3.1 3 1 0 3 3 3 0 Tetratricopeptide repeat Cren7 PF11520.3 gi|390938007|ref|YP_006401745.1| - 3e-31 106.8 2.1 3.2e-31 106.7 1.5 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DHO_dh PF01180.16 gi|390938008|ref|YP_006401746.1| - 8.2e-35 120.1 0.0 2.9e-29 101.9 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Fer4_21 PF14697.1 gi|390938008|ref|YP_006401746.1| - 1.5e-11 43.9 8.4 1.5e-11 43.9 5.8 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|390938008|ref|YP_006401746.1| - 2.1e-11 44.0 11.5 4.7e-11 42.8 8.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|390938008|ref|YP_006401746.1| - 9.9e-11 40.7 19.5 3.6e-06 26.3 1.2 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|390938008|ref|YP_006401746.1| - 3.7e-10 39.2 17.5 6e-06 25.8 1.5 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|390938008|ref|YP_006401746.1| - 4.1e-09 36.1 9.3 4.1e-09 36.1 5.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|390938008|ref|YP_006401746.1| - 1.3e-08 34.9 11.2 2.7e-08 33.9 7.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|390938008|ref|YP_006401746.1| - 2.7e-08 33.2 18.5 1.3e-05 24.8 1.6 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|390938008|ref|YP_006401746.1| - 1.1e-05 26.1 6.4 0.01 16.5 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain NMO PF03060.10 gi|390938008|ref|YP_006401746.1| - 1.4e-05 24.3 2.7 3e-05 23.3 1.9 1.5 1 1 0 1 1 1 1 Nitronate monooxygenase Fer4_8 PF13183.1 gi|390938008|ref|YP_006401746.1| - 2.1e-05 24.4 12.0 6.2e-05 22.9 7.7 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain FMN_dh PF01070.13 gi|390938008|ref|YP_006401746.1| - 0.00039 19.3 1.1 0.002 17.0 0.5 2.2 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Fer4_17 PF13534.1 gi|390938008|ref|YP_006401746.1| - 0.00062 20.0 12.0 0.035 14.4 8.3 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|390938008|ref|YP_006401746.1| - 0.0013 19.2 11.9 0.0077 16.7 1.4 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain His_biosynth PF00977.16 gi|390938008|ref|YP_006401746.1| - 0.0013 17.9 0.0 0.0052 16.0 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein Fer4_4 PF12800.2 gi|390938008|ref|YP_006401746.1| - 0.0021 18.2 19.0 0.043 14.1 2.3 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|390938008|ref|YP_006401746.1| - 0.0076 16.6 10.2 0.39 11.1 1.5 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|390938008|ref|YP_006401746.1| - 0.0093 16.4 19.8 0.056 14.0 3.3 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|390938008|ref|YP_006401746.1| - 0.02 15.2 17.4 0.18 12.2 2.2 2.6 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|390938008|ref|YP_006401746.1| - 0.02 14.7 5.2 0.048 13.5 3.6 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Glu_synthase PF01645.12 gi|390938008|ref|YP_006401746.1| - 0.1 11.5 0.1 0.15 10.9 0.1 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase IMPDH PF00478.20 gi|390938008|ref|YP_006401746.1| - 0.14 10.9 0.5 0.26 10.1 0.3 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PGK PF00162.14 gi|390938009|ref|YP_006401747.1| - 3.1e-103 345.3 0.0 3.5e-103 345.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.15 gi|390938010|ref|YP_006401748.1| - 1.2e-14 54.0 0.0 1.7e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|390938010|ref|YP_006401748.1| - 8.3e-12 45.3 0.1 2.4e-10 40.5 0.1 2.4 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|390938010|ref|YP_006401748.1| - 2.8e-06 27.2 0.0 8.6e-06 25.6 0.0 1.8 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Usp PF00582.21 gi|390938011|ref|YP_006401749.1| - 2e-20 73.4 0.3 7.5e-20 71.5 0.2 1.7 1 1 0 1 1 1 1 Universal stress protein family Glycos_transf_1 PF00534.15 gi|390938012|ref|YP_006401750.1| - 1.3e-12 47.4 0.0 3.2e-12 46.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Phosphorylase PF00343.15 gi|390938012|ref|YP_006401750.1| - 1.7e-09 36.1 0.0 4.9e-08 31.3 0.0 2.1 2 0 0 2 2 2 2 Carbohydrate phosphorylase Glyco_trans_1_4 PF13692.1 gi|390938012|ref|YP_006401750.1| - 3.1e-05 24.1 0.0 7e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Lipoprotein_3 PF00938.12 gi|390938012|ref|YP_006401750.1| - 0.039 13.7 0.2 9.9 6.0 0.0 2.4 2 0 0 2 2 2 0 Lipoprotein Peptidase_M28 PF04389.12 gi|390938013|ref|YP_006401751.1| - 2.7e-06 27.2 0.2 0.0011 18.7 0.0 2.6 3 0 0 3 3 3 2 Peptidase family M28 DUF2172 PF09940.4 gi|390938013|ref|YP_006401751.1| - 0.0006 18.2 0.3 0.13 10.5 0.0 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF2172) B5 PF03484.10 gi|390938014|ref|YP_006401752.1| - 4.2e-16 58.5 0.3 1e-10 41.2 0.1 3.0 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|390938014|ref|YP_006401752.1| - 2e-15 56.7 0.1 3.1e-15 56.0 0.1 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|390938014|ref|YP_006401752.1| - 4.3e-06 26.1 0.0 1.1e-05 24.7 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) Na_H_Exchanger PF00999.16 gi|390938015|ref|YP_006401753.1| - 1.2e-37 129.4 52.6 1.4e-37 129.1 36.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF4519 PF15012.1 gi|390938015|ref|YP_006401753.1| - 6.5 6.7 5.7 1.8 8.5 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) HTH_3 PF01381.17 gi|390938017|ref|YP_006401755.1| - 0.00012 21.8 0.0 0.00023 20.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.7 gi|390938017|ref|YP_006401755.1| - 0.0019 17.6 0.0 0.0044 16.4 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|390938017|ref|YP_006401755.1| - 0.0023 17.7 0.0 0.0041 16.8 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain Cro PF09048.5 gi|390938017|ref|YP_006401755.1| - 0.0031 17.0 0.0 0.0074 15.9 0.0 1.6 2 0 0 2 2 2 1 Cro DUF134 PF02001.11 gi|390938017|ref|YP_006401755.1| - 0.009 15.8 0.1 0.017 15.0 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function DUF134 HTH_19 PF12844.2 gi|390938017|ref|YP_006401755.1| - 0.074 13.1 0.0 0.25 11.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DNA_binding_1 PF01035.15 gi|390938018|ref|YP_006401756.1| - 4.5e-21 74.3 0.0 5.8e-21 74.0 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain MoCF_biosynth PF00994.19 gi|390938019|ref|YP_006401757.1| - 8.8e-25 86.7 0.1 1e-24 86.5 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF1888 PF08985.6 gi|390938019|ref|YP_006401757.1| - 0.064 12.9 0.0 0.088 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1888) HAD_2 PF13419.1 gi|390938020|ref|YP_006401758.1| - 1.5e-20 74.1 0.0 1.9e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|390938020|ref|YP_006401758.1| - 3e-07 30.0 0.0 5e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|390938020|ref|YP_006401758.1| - 3.7e-07 30.7 0.0 4.8e-06 27.1 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase MatE PF01554.13 gi|390938021|ref|YP_006401759.1| - 8.6e-43 145.7 35.4 1.4e-23 83.2 7.0 3.1 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|390938021|ref|YP_006401759.1| - 1e-11 44.8 6.5 1e-11 44.8 4.5 5.0 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain RebB PF11747.3 gi|390938021|ref|YP_006401759.1| - 0.32 10.9 7.0 0.2 11.5 0.6 2.5 2 0 0 2 2 2 0 Killing trait DUF1464 PF07318.7 gi|390938022|ref|YP_006401760.1| - 6e-94 314.6 1.7 6.9e-94 314.4 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) BcrAD_BadFG PF01869.15 gi|390938022|ref|YP_006401760.1| - 0.0039 16.5 0.0 0.0061 15.8 0.0 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family DUF447 PF04289.7 gi|390938023|ref|YP_006401761.1| - 1.4e-13 50.8 0.0 1.5e-13 50.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) ERCC4 PF02732.10 gi|390938023|ref|YP_006401761.1| - 0.025 14.3 0.1 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 ERCC4 domain GHMP_kinases_C PF08544.8 gi|390938024|ref|YP_006401762.1| - 8.3e-07 29.1 0.0 3.1e-06 27.2 0.0 1.9 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|390938024|ref|YP_006401762.1| - 0.00019 21.4 0.3 0.00045 20.2 0.0 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain Cas_Csy4 PF09618.5 gi|390938024|ref|YP_006401762.1| - 0.015 15.1 0.0 0.88 9.3 0.0 2.1 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csy4) G_glu_transpept PF01019.16 gi|390938025|ref|YP_006401763.1| - 2.1e-93 313.5 0.0 2.4e-93 313.3 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase CoA_transf_3 PF02515.12 gi|390938026|ref|YP_006401764.1| - 6.5e-57 191.8 0.0 8.4e-57 191.5 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III Rifin_STEVOR PF02009.11 gi|390938027|ref|YP_006401765.1| - 0.00011 21.9 2.7 0.00013 21.7 1.9 1.1 1 0 0 1 1 1 1 Rifin/stevor family TMEM154 PF15102.1 gi|390938027|ref|YP_006401765.1| - 0.00086 19.0 7.0 0.002 17.8 4.9 1.6 1 0 0 1 1 1 1 TMEM154 protein family DUF2207 PF09972.4 gi|390938027|ref|YP_006401765.1| - 0.0096 14.5 0.6 0.013 14.1 0.4 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) TPP_enzyme_C PF02775.16 gi|390938027|ref|YP_006401765.1| - 0.065 12.8 0.3 5.9 6.4 0.0 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Herpes_gE PF02480.11 gi|390938027|ref|YP_006401765.1| - 0.23 9.7 2.2 0.31 9.2 1.5 1.2 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E MGC-24 PF05283.6 gi|390938027|ref|YP_006401765.1| - 0.58 9.9 9.2 0.91 9.2 6.4 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) KaiC PF06745.8 gi|390938028|ref|YP_006401766.1| - 4.7e-22 78.2 0.1 5.9e-22 77.9 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|390938028|ref|YP_006401766.1| - 2.5e-12 46.6 0.0 4e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|390938028|ref|YP_006401766.1| - 1.7e-05 24.9 0.0 5.6e-05 23.2 0.0 1.8 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|390938028|ref|YP_006401766.1| - 0.00017 21.5 0.0 0.00043 20.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|390938028|ref|YP_006401766.1| - 0.00045 19.9 0.4 0.052 13.2 0.2 2.8 1 1 0 1 1 1 1 NACHT domain SRP54 PF00448.17 gi|390938028|ref|YP_006401766.1| - 0.00053 19.4 0.0 0.0013 18.1 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain IstB_IS21 PF01695.12 gi|390938028|ref|YP_006401766.1| - 0.00069 19.0 0.0 0.0015 17.9 0.0 1.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_31 PF13614.1 gi|390938028|ref|YP_006401766.1| - 0.0016 18.3 0.0 0.025 14.5 0.0 2.4 2 1 1 3 3 2 1 AAA domain DnaB_C PF03796.10 gi|390938028|ref|YP_006401766.1| - 0.0024 16.8 0.1 0.0049 15.7 0.1 1.6 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.1 gi|390938028|ref|YP_006401766.1| - 0.0074 16.2 0.0 0.02 14.9 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|390938028|ref|YP_006401766.1| - 0.0074 15.7 0.0 0.0087 15.5 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain CbiA PF01656.18 gi|390938028|ref|YP_006401766.1| - 0.0075 15.6 0.1 0.013 14.8 0.0 1.7 2 1 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Arch_ATPase PF01637.13 gi|390938028|ref|YP_006401766.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase NB-ARC PF00931.17 gi|390938028|ref|YP_006401766.1| - 0.015 14.1 0.0 0.02 13.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain FtsK_SpoIIIE PF01580.13 gi|390938028|ref|YP_006401766.1| - 0.016 14.7 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF2075 PF09848.4 gi|390938028|ref|YP_006401766.1| - 0.017 14.0 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|390938028|ref|YP_006401766.1| - 0.017 13.9 0.0 0.035 13.0 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|390938028|ref|YP_006401766.1| - 0.018 14.7 0.0 0.054 13.2 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Elong_Iki1 PF10483.4 gi|390938028|ref|YP_006401766.1| - 0.02 14.2 0.0 0.064 12.6 0.0 1.8 1 1 0 1 1 1 0 Elongator subunit Iki1 Sigma54_activ_2 PF14532.1 gi|390938028|ref|YP_006401766.1| - 0.025 14.6 0.0 0.063 13.3 0.0 1.6 1 1 1 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|390938028|ref|YP_006401766.1| - 0.041 14.1 0.0 0.071 13.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter ATP-synt_ab PF00006.20 gi|390938028|ref|YP_006401766.1| - 0.068 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|390938028|ref|YP_006401766.1| - 0.085 12.5 0.0 0.21 11.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|390938028|ref|YP_006401766.1| - 0.088 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain KTI12 PF08433.5 gi|390938028|ref|YP_006401766.1| - 0.091 11.9 0.0 0.47 9.6 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DUF835 PF05763.7 gi|390938028|ref|YP_006401766.1| - 0.1 12.1 0.5 0.47 10.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF835) AAA_18 PF13238.1 gi|390938028|ref|YP_006401766.1| - 0.11 12.7 0.2 0.29 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|390938028|ref|YP_006401766.1| - 0.12 11.3 0.0 0.22 10.5 0.0 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase Zeta_toxin PF06414.7 gi|390938028|ref|YP_006401766.1| - 0.14 11.2 0.0 0.42 9.6 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin Fer2_4 PF13510.1 gi|390938029|ref|YP_006401767.1| - 1.7e-19 69.3 0.0 3.5e-19 68.4 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_2 PF07992.9 gi|390938029|ref|YP_006401767.1| - 3.3e-16 59.7 9.2 3.3e-14 53.2 6.4 3.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|390938029|ref|YP_006401767.1| - 4.3e-12 46.5 1.9 7.4e-08 32.6 0.8 3.2 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|390938029|ref|YP_006401767.1| - 2.4e-10 40.0 4.3 4.9e-07 29.1 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|390938029|ref|YP_006401767.1| - 2.7e-10 40.1 4.5 3.7e-05 23.6 0.1 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|390938029|ref|YP_006401767.1| - 4.9e-09 35.7 0.1 4.9e-09 35.7 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|390938029|ref|YP_006401767.1| - 6.4e-09 35.2 1.5 5.7e-06 25.5 0.0 2.3 2 0 0 2 2 2 2 Thi4 family DAO PF01266.19 gi|390938029|ref|YP_006401767.1| - 6.6e-09 35.1 10.9 0.00036 19.5 0.1 3.8 3 1 0 4 4 4 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|390938029|ref|YP_006401767.1| - 2.9e-08 32.9 12.1 2.6e-07 29.8 0.9 3.6 2 2 2 4 4 4 2 FAD binding domain GIDA PF01134.17 gi|390938029|ref|YP_006401767.1| - 8.3e-08 31.4 7.2 1.3e-05 24.2 0.0 3.6 4 0 0 4 4 4 2 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|390938029|ref|YP_006401767.1| - 3e-07 30.7 11.9 0.00019 21.7 2.2 3.0 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|390938029|ref|YP_006401767.1| - 6.1e-06 26.4 1.4 0.12 12.6 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding HI0933_like PF03486.9 gi|390938029|ref|YP_006401767.1| - 2e-05 23.2 6.8 9.7e-05 20.9 0.2 2.7 3 1 0 3 3 3 1 HI0933-like protein ApbA PF02558.11 gi|390938029|ref|YP_006401767.1| - 2.3e-05 23.8 3.0 0.0049 16.3 0.2 2.4 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|390938029|ref|YP_006401767.1| - 0.00076 19.5 1.8 0.23 11.5 0.0 2.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|390938029|ref|YP_006401767.1| - 0.011 15.6 4.9 1.5 8.6 0.8 2.9 3 0 0 3 3 3 0 ThiF family ELFV_dehydrog PF00208.16 gi|390938029|ref|YP_006401767.1| - 0.014 15.0 1.8 1.6 8.2 0.1 2.2 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Lycopene_cycl PF05834.7 gi|390938029|ref|YP_006401767.1| - 0.017 14.0 0.3 0.017 14.0 0.2 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|390938029|ref|YP_006401767.1| - 0.023 13.7 2.6 1.9 7.4 0.6 2.9 3 1 1 4 4 3 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|390938029|ref|YP_006401767.1| - 0.057 12.7 4.1 2.8 7.2 0.1 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|390938029|ref|YP_006401767.1| - 0.17 12.3 3.2 1.4 9.3 0.9 3.0 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|390938029|ref|YP_006401767.1| - 0.35 10.5 7.8 2.9 7.5 0.3 2.8 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|390938029|ref|YP_006401767.1| - 0.46 10.0 3.4 2.7 7.5 0.1 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|390938029|ref|YP_006401767.1| - 0.63 9.7 6.1 2.9 7.6 0.1 3.6 4 0 0 4 4 4 0 FAD-NAD(P)-binding NAD_binding_10 PF13460.1 gi|390938029|ref|YP_006401767.1| - 0.69 9.8 5.3 7.6 6.4 0.3 2.4 2 0 0 2 2 2 0 NADH(P)-binding TrkA_N PF02254.13 gi|390938029|ref|YP_006401767.1| - 1.4 8.9 4.6 20 5.1 0.1 3.1 2 1 0 2 2 2 0 TrkA-N domain Fer4 PF00037.22 gi|390938030|ref|YP_006401768.1| - 2.1e-11 42.9 15.2 1.6e-07 30.5 2.5 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|390938030|ref|YP_006401768.1| - 5e-08 33.2 9.4 8.2e-08 32.5 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|390938030|ref|YP_006401768.1| - 7.7e-07 28.7 13.7 0.0002 21.0 1.4 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|390938030|ref|YP_006401768.1| - 2.9e-06 27.9 6.9 0.0076 16.9 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|390938030|ref|YP_006401768.1| - 3.6e-06 27.1 8.9 7.5e-06 26.1 6.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|390938030|ref|YP_006401768.1| - 3.8e-06 26.5 11.3 8.7e-06 25.4 7.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|390938030|ref|YP_006401768.1| - 5.5e-06 25.9 15.6 0.00062 19.5 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|390938030|ref|YP_006401768.1| - 3e-05 23.7 20.0 0.00064 19.5 7.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|390938030|ref|YP_006401768.1| - 3.8e-05 23.6 11.2 0.0016 18.5 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|390938030|ref|YP_006401768.1| - 0.00028 20.8 7.6 0.0022 17.9 0.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|390938030|ref|YP_006401768.1| - 0.00038 20.9 0.3 0.00038 20.9 0.2 2.6 2 2 0 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|390938030|ref|YP_006401768.1| - 0.006 16.9 6.8 0.37 11.2 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|390938030|ref|YP_006401768.1| - 0.011 16.1 0.2 0.011 16.1 0.1 2.6 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|390938030|ref|YP_006401768.1| - 0.029 14.9 17.1 0.28 11.8 1.9 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|390938030|ref|YP_006401768.1| - 0.044 14.1 10.6 8 6.9 7.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain RPEL PF02755.10 gi|390938030|ref|YP_006401768.1| - 0.1 11.9 0.2 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 RPEL repeat Fer4_11 PF13247.1 gi|390938030|ref|YP_006401768.1| - 0.21 11.5 2.7 0.49 10.3 2.0 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer2_BFD PF04324.10 gi|390938031|ref|YP_006401769.1| - 1.6e-09 37.6 1.3 2e-09 37.3 0.9 1.2 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain DAO PF01266.19 gi|390938032|ref|YP_006401770.1| - 1.8e-71 240.9 0.0 2.1e-71 240.7 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|390938032|ref|YP_006401770.1| - 5.2e-08 32.1 0.1 1.3e-07 30.7 0.1 1.6 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|390938032|ref|YP_006401770.1| - 8.8e-07 27.7 0.2 0.0041 15.6 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.1 gi|390938032|ref|YP_006401770.1| - 1.1e-06 28.4 0.1 0.00053 19.7 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|390938032|ref|YP_006401770.1| - 4e-06 26.8 2.3 0.0001 22.2 1.6 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|390938032|ref|YP_006401770.1| - 2.4e-05 23.5 0.2 4.7e-05 22.5 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|390938032|ref|YP_006401770.1| - 5.9e-05 23.2 0.1 0.018 15.1 0.1 2.2 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|390938032|ref|YP_006401770.1| - 0.00059 19.8 0.2 0.0017 18.3 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|390938032|ref|YP_006401770.1| - 0.0052 15.9 0.9 0.0081 15.2 0.1 1.7 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|390938032|ref|YP_006401770.1| - 0.022 13.8 0.2 0.033 13.2 0.1 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|390938032|ref|YP_006401770.1| - 0.032 14.6 1.5 0.28 11.6 0.1 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|390938032|ref|YP_006401770.1| - 0.045 12.3 0.3 0.071 11.7 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase TrkA_N PF02254.13 gi|390938032|ref|YP_006401770.1| - 0.085 12.8 0.7 1.4 8.9 0.3 2.4 2 0 0 2 2 2 0 TrkA-N domain Lycopene_cycl PF05834.7 gi|390938032|ref|YP_006401770.1| - 0.21 10.4 0.3 1.8 7.4 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein MoaE PF02391.12 gi|390938033|ref|YP_006401771.1| - 1.4e-22 79.6 0.1 1.7e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 MoaE protein OKR_DC_1_N PF03709.10 gi|390938033|ref|YP_006401771.1| - 0.048 13.7 0.0 0.069 13.2 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain ThiS PF02597.15 gi|390938034|ref|YP_006401772.1| - 4.9e-11 42.8 0.0 5.7e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|390938034|ref|YP_006401772.1| - 0.00055 19.4 0.0 0.0017 17.8 0.0 1.7 2 0 0 2 2 2 1 Mut7-C ubiquitin TGS PF02824.16 gi|390938034|ref|YP_006401772.1| - 0.0059 16.4 0.1 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 TGS domain ThiS-like PF14453.1 gi|390938034|ref|YP_006401772.1| - 0.0091 15.8 0.1 0.049 13.4 0.0 1.9 1 1 0 1 1 1 1 ThiS-like ubiquitin TOBE_3 PF12857.2 gi|390938034|ref|YP_006401772.1| - 0.13 12.1 0.0 10 6.0 0.0 2.2 2 0 0 2 2 2 0 TOBE-like domain MoaC PF01967.16 gi|390938035|ref|YP_006401773.1| - 1.1e-42 144.9 1.1 1.2e-42 144.8 0.8 1.0 1 0 0 1 1 1 1 MoaC family Radical_SAM PF04055.16 gi|390938036|ref|YP_006401774.1| - 1.1e-20 74.4 0.0 2e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|390938036|ref|YP_006401774.1| - 6.9e-18 64.5 0.0 1e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|390938036|ref|YP_006401774.1| - 1.7e-07 31.2 0.0 3.6e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|390938036|ref|YP_006401774.1| - 9.4e-07 29.0 0.0 1.7e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain ABC_tran PF00005.22 gi|390938037|ref|YP_006401775.1| - 5.2e-30 104.5 0.0 7.5e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938037|ref|YP_006401775.1| - 1.4e-16 61.3 0.5 4.1e-07 30.2 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|390938037|ref|YP_006401775.1| - 2.3e-07 30.2 0.1 0.01 14.9 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|390938037|ref|YP_006401775.1| - 2.8e-05 24.5 0.5 4.6e-05 23.8 0.4 1.7 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|390938037|ref|YP_006401775.1| - 0.00033 19.3 0.0 0.0034 16.0 0.1 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|390938037|ref|YP_006401775.1| - 0.00093 18.6 0.1 0.0022 17.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|390938037|ref|YP_006401775.1| - 0.0011 18.9 0.0 0.032 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|390938037|ref|YP_006401775.1| - 0.0028 17.8 0.0 0.024 14.8 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|390938037|ref|YP_006401775.1| - 0.0037 16.9 0.0 0.009 15.7 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|390938037|ref|YP_006401775.1| - 0.005 17.6 0.1 0.019 15.7 0.1 2.3 1 1 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|390938037|ref|YP_006401775.1| - 0.012 15.0 0.3 0.026 13.9 0.0 1.6 2 0 0 2 2 2 0 MutS domain V AAA_14 PF13173.1 gi|390938037|ref|YP_006401775.1| - 0.012 15.4 0.0 0.052 13.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|390938037|ref|YP_006401775.1| - 0.013 14.9 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain SMC_N PF02463.14 gi|390938037|ref|YP_006401775.1| - 0.015 14.5 0.1 0.052 12.7 0.1 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain T2SE PF00437.15 gi|390938037|ref|YP_006401775.1| - 0.032 13.1 0.1 0.05 12.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|390938037|ref|YP_006401775.1| - 0.032 13.6 0.0 0.14 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|390938037|ref|YP_006401775.1| - 0.036 13.6 0.0 0.065 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|390938037|ref|YP_006401775.1| - 0.037 14.1 0.2 0.38 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|390938037|ref|YP_006401775.1| - 0.054 13.3 0.0 0.1 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|390938037|ref|YP_006401775.1| - 0.064 12.3 0.0 0.098 11.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin RecA PF00154.16 gi|390938037|ref|YP_006401775.1| - 0.13 11.3 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein MobB PF03205.9 gi|390938037|ref|YP_006401775.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|390938037|ref|YP_006401775.1| - 0.15 11.8 0.1 0.38 10.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain ATP-synt_ab PF00006.20 gi|390938037|ref|YP_006401775.1| - 0.18 11.3 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|390938037|ref|YP_006401775.1| - 0.23 10.9 0.0 0.37 10.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|390938038|ref|YP_006401776.1| - 1.4e-16 60.5 20.7 1.4e-16 60.5 14.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0154 PF03672.8 gi|390938038|ref|YP_006401776.1| - 0.039 13.5 0.1 0.099 12.2 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) HAMP PF00672.20 gi|390938038|ref|YP_006401776.1| - 0.58 10.3 0.1 0.58 10.3 0.1 3.2 4 0 0 4 4 4 0 HAMP domain SBP_bac_11 PF13531.1 gi|390938039|ref|YP_006401777.1| - 5.7e-31 107.9 0.0 7.3e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|390938039|ref|YP_006401777.1| - 0.00014 21.7 0.0 0.00033 20.5 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|390938039|ref|YP_006401777.1| - 0.0083 15.2 0.1 0.041 12.9 0.0 1.8 2 0 0 2 2 2 1 LysR substrate binding domain Phosphonate-bd PF12974.2 gi|390938039|ref|YP_006401777.1| - 0.019 14.3 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF3112 PF11309.3 gi|390938039|ref|YP_006401777.1| - 0.03 14.0 0.9 22 4.8 0.0 2.9 1 1 1 3 3 3 0 Protein of unknown function (DUF3112) YukC PF10140.4 gi|390938039|ref|YP_006401777.1| - 0.92 8.0 3.4 1.7 7.1 2.3 1.3 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukC MoCF_biosynth PF00994.19 gi|390938040|ref|YP_006401778.1| - 1.3e-17 63.5 0.5 2e-17 62.9 0.4 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF89 PF01937.14 gi|390938041|ref|YP_006401779.1| - 4.9e-35 120.9 0.1 1e-34 119.9 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF89 DUF2314 PF10077.4 gi|390938041|ref|YP_006401779.1| - 0.041 13.9 0.0 0.072 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2314) YtxH PF12732.2 gi|390938044|ref|YP_006401782.1| - 0.16 12.3 0.5 23 5.4 0.0 2.2 2 0 0 2 2 2 0 YtxH-like protein SIS PF01380.17 gi|390938045|ref|YP_006401783.1| - 1.9e-19 69.5 0.0 4.9e-19 68.2 0.0 1.7 2 0 0 2 2 2 1 SIS domain SIS_2 PF13580.1 gi|390938045|ref|YP_006401783.1| - 1e-15 57.6 1.6 7.2e-10 38.7 0.3 2.2 1 1 1 2 2 2 2 SIS domain 2-Hacid_dh_C PF02826.14 gi|390938045|ref|YP_006401783.1| - 0.0043 16.2 0.5 1.3 8.1 0.0 2.1 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|390938045|ref|YP_006401783.1| - 0.08 12.5 0.0 4.6 6.7 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain PRMT5 PF05185.11 gi|390938045|ref|YP_006401783.1| - 0.14 11.0 1.9 1.5 7.6 0.0 2.0 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase Radical_SAM PF04055.16 gi|390938046|ref|YP_006401784.1| - 1.5e-14 54.4 0.0 2.6e-14 53.7 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|390938046|ref|YP_006401784.1| - 1.6e-08 34.4 1.1 0.0024 17.4 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) ARID PF01388.16 gi|390938046|ref|YP_006401784.1| - 0.023 14.5 0.0 0.097 12.5 0.0 1.9 2 0 0 2 2 2 0 ARID/BRIGHT DNA binding domain zf-ZPR1 PF03367.8 gi|390938047|ref|YP_006401785.1| - 4.8e-32 110.3 0.0 5.6e-32 110.1 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|390938047|ref|YP_006401785.1| - 0.05 13.8 0.6 0.09 13.0 0.1 1.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.11 gi|390938047|ref|YP_006401785.1| - 0.086 12.5 7.2 1 9.1 0.2 2.9 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-ISL3 PF14690.1 gi|390938047|ref|YP_006401785.1| - 0.13 12.3 2.6 0.62 10.1 0.1 2.6 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|390938047|ref|YP_006401785.1| - 0.37 10.3 2.5 5.3 6.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|390938047|ref|YP_006401785.1| - 0.63 10.0 2.9 25 4.9 0.1 3.1 3 0 0 3 3 3 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|390938047|ref|YP_006401785.1| - 2.7 7.3 6.5 8.9 5.7 0.1 3.3 3 1 0 3 3 3 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|390938047|ref|YP_006401785.1| - 3.3 7.4 5.0 6.5 6.5 0.0 2.4 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Peptidase_M29 PF02073.10 gi|390938048|ref|YP_006401786.1| - 2.6e-113 378.8 0.0 2.9e-113 378.6 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) PsbP PF01789.11 gi|390938048|ref|YP_006401786.1| - 0.011 15.1 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 PsbP Ferritin PF00210.19 gi|390938049|ref|YP_006401787.1| - 5.8e-35 120.1 2.3 6.6e-35 119.9 1.6 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|390938049|ref|YP_006401787.1| - 3.1e-05 24.3 1.0 4.1e-05 23.9 0.7 1.2 1 0 0 1 1 1 1 Rubrerythrin CARD PF00619.16 gi|390938049|ref|YP_006401787.1| - 3.1e-05 23.7 0.1 8.3e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 Caspase recruitment domain RTTN_N PF14726.1 gi|390938049|ref|YP_006401787.1| - 0.084 13.4 0.1 0.15 12.6 0.0 1.6 1 0 0 1 1 1 0 Rotatin, an armadillo repeat protein, centriole functioning CitG PF01874.11 gi|390938050|ref|YP_006401788.1| - 9e-52 175.9 0.0 1.1e-51 175.6 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Oxidored_molyb PF00174.14 gi|390938051|ref|YP_006401789.1| - 9.6e-39 132.5 0.0 1.3e-38 132.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Curto_V2 PF07325.6 gi|390938052|ref|YP_006401790.1| - 0.041 13.5 0.7 0.078 12.6 0.3 1.6 1 1 0 1 1 1 0 Curtovirus V2 protein Phage_30_8 PF06019.6 gi|390938052|ref|YP_006401790.1| - 0.097 12.3 0.3 0.16 11.6 0.2 1.4 1 1 0 1 1 1 0 Phage GP30.8 protein OTCace PF00185.19 gi|390938053|ref|YP_006401791.1| - 3.2e-40 137.5 0.0 7.7e-40 136.3 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|390938053|ref|YP_006401791.1| - 5.9e-35 120.0 0.0 1e-34 119.2 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Methyltransf_31 PF13847.1 gi|390938053|ref|YP_006401791.1| - 0.031 13.8 0.0 0.21 11.1 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Phage_Cox PF10743.4 gi|390938053|ref|YP_006401791.1| - 0.039 13.9 0.0 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 Regulatory phage protein cox SBP_bac_5 PF00496.17 gi|390938054|ref|YP_006401792.1| - 2.5e-72 243.7 2.2 3e-72 243.5 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|390938055|ref|YP_006401793.1| - 2.6e-30 105.3 14.9 2.6e-30 105.3 10.3 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|390938056|ref|YP_006401794.1| - 1.7e-26 92.9 15.3 1.7e-26 92.9 10.6 1.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|390938056|ref|YP_006401794.1| - 0.0015 17.8 0.5 0.0015 17.8 0.3 2.7 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|390938057|ref|YP_006401795.1| - 1.5e-26 93.3 0.0 2e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|390938057|ref|YP_006401795.1| - 9.7e-16 57.8 0.0 1.7e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|390938057|ref|YP_006401795.1| - 6.7e-13 49.2 0.2 3.7e-08 33.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|390938057|ref|YP_006401795.1| - 2.3e-05 23.7 0.0 3.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|390938057|ref|YP_006401795.1| - 5.5e-05 23.3 0.1 0.00019 21.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|390938057|ref|YP_006401795.1| - 8.3e-05 22.1 0.0 0.00016 21.1 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|390938057|ref|YP_006401795.1| - 0.00012 22.1 0.0 0.00035 20.6 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|390938057|ref|YP_006401795.1| - 0.00044 19.7 0.0 0.00088 18.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|390938057|ref|YP_006401795.1| - 0.0014 17.7 0.5 0.79 8.6 0.5 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|390938057|ref|YP_006401795.1| - 0.0019 18.5 0.0 0.0024 18.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|390938057|ref|YP_006401795.1| - 0.0022 17.2 0.0 0.0043 16.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|390938057|ref|YP_006401795.1| - 0.0089 16.8 0.5 0.019 15.8 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|390938057|ref|YP_006401795.1| - 0.021 14.2 0.0 0.091 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|390938057|ref|YP_006401795.1| - 0.035 14.4 0.2 0.058 13.6 0.0 1.5 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|390938057|ref|YP_006401795.1| - 0.036 14.2 0.0 0.06 13.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.18 gi|390938057|ref|YP_006401795.1| - 0.054 13.4 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|390938057|ref|YP_006401795.1| - 0.078 12.4 0.0 0.17 11.3 0.0 1.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family PRK PF00485.13 gi|390938057|ref|YP_006401795.1| - 0.1 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.20 gi|390938057|ref|YP_006401795.1| - 0.12 11.9 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.16 gi|390938057|ref|YP_006401795.1| - 0.12 11.5 0.0 0.65 9.1 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.4 gi|390938057|ref|YP_006401795.1| - 0.14 10.7 2.5 7.5 5.0 0.3 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_13 PF13166.1 gi|390938057|ref|YP_006401795.1| - 0.14 10.5 0.1 1.2 7.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|390938058|ref|YP_006401796.1| - 1.5e-33 115.9 0.0 2.3e-33 115.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938058|ref|YP_006401796.1| - 6.8e-15 55.7 1.6 1.9e-08 34.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|390938058|ref|YP_006401796.1| - 1.8e-06 27.6 0.7 0.0012 18.3 0.3 2.1 1 1 1 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|390938058|ref|YP_006401796.1| - 5.8e-06 25.6 0.5 0.052 12.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|390938058|ref|YP_006401796.1| - 0.00026 20.4 0.0 0.00045 19.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|390938058|ref|YP_006401796.1| - 0.00031 20.8 1.6 0.0039 17.3 1.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|390938058|ref|YP_006401796.1| - 0.00032 20.0 0.5 0.011 14.9 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|390938058|ref|YP_006401796.1| - 0.00037 20.5 0.1 0.00053 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|390938058|ref|YP_006401796.1| - 0.00046 19.1 0.1 0.00083 18.3 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|390938058|ref|YP_006401796.1| - 0.00069 19.3 0.0 0.002 17.8 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|390938058|ref|YP_006401796.1| - 0.00085 19.0 0.2 0.0033 17.1 0.0 1.8 2 0 0 2 2 2 1 NACHT domain oligo_HPY PF08352.7 gi|390938058|ref|YP_006401796.1| - 0.0015 18.8 0.0 0.0026 18.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region Pox_A32 PF04665.7 gi|390938058|ref|YP_006401796.1| - 0.0015 17.8 0.1 0.0057 15.9 0.0 1.8 2 0 0 2 2 2 1 Poxvirus A32 protein AAA_5 PF07728.9 gi|390938058|ref|YP_006401796.1| - 0.0019 17.9 1.3 0.034 13.8 0.0 2.5 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|390938058|ref|YP_006401796.1| - 0.0021 17.4 0.7 0.012 15.0 0.5 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|390938058|ref|YP_006401796.1| - 0.0021 17.2 0.2 0.0035 16.5 0.0 1.5 2 0 0 2 2 1 1 Protein of unknown function, DUF258 MobB PF03205.9 gi|390938058|ref|YP_006401796.1| - 0.0024 17.5 0.1 0.0048 16.6 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|390938058|ref|YP_006401796.1| - 0.0027 18.0 0.0 0.0038 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|390938058|ref|YP_006401796.1| - 0.004 16.6 0.0 0.0055 16.1 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|390938058|ref|YP_006401796.1| - 0.0046 17.2 0.2 0.043 14.1 0.0 2.5 3 1 0 3 3 3 1 AAA domain Miro PF08477.8 gi|390938058|ref|YP_006401796.1| - 0.0047 17.4 0.1 0.0079 16.6 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein Arch_ATPase PF01637.13 gi|390938058|ref|YP_006401796.1| - 0.0055 16.4 0.1 0.0083 15.8 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase cobW PF02492.14 gi|390938058|ref|YP_006401796.1| - 0.0059 16.0 0.0 0.0098 15.3 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|390938058|ref|YP_006401796.1| - 0.0093 16.7 0.0 0.03 15.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain PduV-EutP PF10662.4 gi|390938058|ref|YP_006401796.1| - 0.017 14.6 0.3 0.057 12.9 0.1 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Mg_chelatase PF01078.16 gi|390938058|ref|YP_006401796.1| - 0.021 13.9 0.0 0.049 12.8 0.0 1.6 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.1 gi|390938058|ref|YP_006401796.1| - 0.023 13.1 0.1 1.7 7.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|390938058|ref|YP_006401796.1| - 0.024 14.1 0.3 0.25 10.8 0.2 2.0 1 1 0 1 1 1 0 DEAD/DEAH box helicase DUF87 PF01935.12 gi|390938058|ref|YP_006401796.1| - 0.031 14.0 0.2 0.07 12.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_33 PF13671.1 gi|390938058|ref|YP_006401796.1| - 0.033 14.0 0.0 0.06 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|390938058|ref|YP_006401796.1| - 0.034 13.7 0.0 0.1 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|390938058|ref|YP_006401796.1| - 0.039 12.5 0.2 4.1 5.8 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class G-alpha PF00503.15 gi|390938058|ref|YP_006401796.1| - 0.054 12.1 0.1 0.081 11.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA PF00004.24 gi|390938058|ref|YP_006401796.1| - 0.059 13.5 0.3 0.51 10.5 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|390938058|ref|YP_006401796.1| - 0.075 12.6 0.2 0.2 11.2 0.1 1.8 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activat PF00158.21 gi|390938058|ref|YP_006401796.1| - 0.078 12.4 0.1 0.34 10.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain ATP-synt_ab PF00006.20 gi|390938058|ref|YP_006401796.1| - 0.086 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|390938058|ref|YP_006401796.1| - 0.087 11.6 0.0 0.83 8.4 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.10 gi|390938058|ref|YP_006401796.1| - 0.089 12.4 0.8 0.24 11.0 0.1 2.0 2 0 0 2 2 2 0 NTPase MMR_HSR1 PF01926.18 gi|390938058|ref|YP_006401796.1| - 0.097 12.6 0.2 0.23 11.4 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase AAA_24 PF13479.1 gi|390938058|ref|YP_006401796.1| - 0.1 12.1 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain DBI_PRT PF02277.12 gi|390938058|ref|YP_006401796.1| - 0.12 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyltransferase DUF3987 PF13148.1 gi|390938058|ref|YP_006401796.1| - 0.13 10.7 0.0 0.27 9.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Zeta_toxin PF06414.7 gi|390938058|ref|YP_006401796.1| - 0.14 11.2 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin tRNA-synt_2d PF01409.15 gi|390938059|ref|YP_006401797.1| - 7.1e-79 264.4 0.0 9.6e-79 264.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|390938059|ref|YP_006401797.1| - 1.9e-06 26.8 3.1 0.0026 16.5 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) Fer4_12 PF13353.1 gi|390938060|ref|YP_006401798.1| - 0.00036 20.6 0.0 0.00071 19.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|390938060|ref|YP_006401798.1| - 0.098 12.8 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Radical SAM superfamily AAA_31 PF13614.1 gi|390938060|ref|YP_006401798.1| - 0.1 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Robl_LC7 PF03259.12 gi|390938060|ref|YP_006401798.1| - 0.1 12.1 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Roadblock/LC7 domain QueT PF06177.6 gi|390938061|ref|YP_006401799.1| - 1.3e-32 112.8 17.2 1.6e-32 112.5 11.9 1.0 1 0 0 1 1 1 1 QueT transporter ABC_tran PF00005.22 gi|390938062|ref|YP_006401800.1| - 3.1e-22 79.3 0.0 4.1e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938062|ref|YP_006401800.1| - 2.9e-11 43.8 0.7 4.2e-06 26.9 0.3 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|390938062|ref|YP_006401800.1| - 1.2e-09 37.7 0.0 2.2e-08 33.5 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|390938062|ref|YP_006401800.1| - 1.8e-06 27.3 0.0 0.00029 20.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|390938062|ref|YP_006401800.1| - 6e-06 26.7 0.0 7.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|390938062|ref|YP_006401800.1| - 0.00012 21.5 0.1 0.00023 20.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|390938062|ref|YP_006401800.1| - 0.0033 16.6 0.0 0.0055 15.8 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|390938062|ref|YP_006401800.1| - 0.011 14.9 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|390938062|ref|YP_006401800.1| - 0.014 15.2 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|390938062|ref|YP_006401800.1| - 0.015 14.9 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|390938062|ref|YP_006401800.1| - 0.023 14.7 0.2 0.027 14.4 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain DLIC PF05783.6 gi|390938062|ref|YP_006401800.1| - 0.055 12.1 0.0 0.072 11.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_10 PF12846.2 gi|390938062|ref|YP_006401800.1| - 0.056 12.8 0.0 0.15 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|390938062|ref|YP_006401800.1| - 0.062 14.1 0.2 0.14 12.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|390938062|ref|YP_006401800.1| - 0.072 13.2 0.0 0.18 12.0 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|390938062|ref|YP_006401800.1| - 0.073 12.4 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|390938062|ref|YP_006401800.1| - 0.094 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|390938062|ref|YP_006401800.1| - 0.099 12.3 0.0 0.32 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|390938062|ref|YP_006401800.1| - 0.11 11.9 0.1 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|390938062|ref|YP_006401800.1| - 0.11 12.9 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|390938062|ref|YP_006401800.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|390938062|ref|YP_006401800.1| - 0.13 12.3 0.1 0.24 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|390938062|ref|YP_006401800.1| - 0.13 10.8 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DUF4227 PF14004.1 gi|390938063|ref|YP_006401801.1| - 3.8 7.4 7.9 0.58 10.0 1.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4227) RHD3 PF05879.7 gi|390938063|ref|YP_006401801.1| - 6.9 4.4 6.2 9 4.0 4.3 1.1 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) Adenine_deam_C PF13382.1 gi|390938064|ref|YP_006401802.1| - 3e-58 195.7 0.2 6.8e-58 194.6 0.0 1.7 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|390938064|ref|YP_006401802.1| - 3.7e-31 108.9 0.0 9.9e-30 104.3 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|390938064|ref|YP_006401802.1| - 3.1e-11 42.9 0.7 3.1e-11 42.9 0.5 2.3 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|390938064|ref|YP_006401802.1| - 6.1e-10 39.5 0.0 4.7e-07 30.1 0.0 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|390938064|ref|YP_006401802.1| - 7.8e-06 25.3 0.3 0.024 13.8 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.15 gi|390938065|ref|YP_006401803.1| - 4.2e-49 167.9 0.0 5.5e-49 167.6 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|390938065|ref|YP_006401803.1| - 8.6e-13 48.9 0.0 7e-12 45.9 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|390938065|ref|YP_006401803.1| - 2.9e-11 43.0 0.0 1.1e-10 41.1 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|390938065|ref|YP_006401803.1| - 5.7e-10 38.9 0.5 5.7e-07 29.0 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Aminotran_5 PF00266.14 gi|390938067|ref|YP_006401805.1| - 1.8e-142 474.4 0.0 2.1e-142 474.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|390938067|ref|YP_006401805.1| - 6.2e-10 38.6 0.0 9.7e-10 38.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|390938067|ref|YP_006401805.1| - 2.8e-05 22.5 0.0 0.00022 19.6 0.0 2.2 3 0 0 3 3 3 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|390938067|ref|YP_006401805.1| - 0.00011 21.4 0.0 0.00015 21.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.8 gi|390938067|ref|YP_006401805.1| - 0.024 13.3 0.0 0.041 12.6 0.0 1.3 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase tRNA-synt_2 PF00152.15 gi|390938068|ref|YP_006401806.1| - 3.9e-44 150.8 0.0 5.7e-44 150.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) HD PF01966.17 gi|390938069|ref|YP_006401807.1| - 0.013 15.4 0.1 0.027 14.4 0.1 1.5 1 0 0 1 1 1 0 HD domain PA14 PF07691.7 gi|390938070|ref|YP_006401808.1| - 1.4e-11 44.2 0.0 2e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 PA14 domain Mem_trans PF03547.13 gi|390938071|ref|YP_006401809.1| - 6.3e-11 41.2 27.0 3.1e-07 29.0 4.2 2.2 1 1 1 2 2 2 2 Membrane transport protein Trypsin_2 PF13365.1 gi|390938072|ref|YP_006401810.1| - 1.1e-20 73.8 0.3 1.6e-20 73.2 0.2 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|390938072|ref|YP_006401810.1| - 6.1e-17 61.9 0.0 1.1e-16 61.0 0.0 1.4 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|390938072|ref|YP_006401810.1| - 1.3e-12 47.3 0.1 6.2e-12 45.2 0.0 2.1 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.19 gi|390938072|ref|YP_006401810.1| - 1.2e-08 34.9 0.0 2.9e-08 33.7 0.0 1.8 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|390938072|ref|YP_006401810.1| - 0.00024 19.7 0.6 0.39 9.0 0.1 2.1 2 0 0 2 2 2 2 Peptidase S46 Tricorn_PDZ PF14685.1 gi|390938072|ref|YP_006401810.1| - 0.0076 16.0 0.3 0.054 13.2 0.0 2.4 2 0 0 2 2 2 1 Tricorn protease PDZ domain HTH_23 PF13384.1 gi|390938073|ref|YP_006401811.1| - 3.3e-05 23.3 0.1 0.00011 21.7 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_7 PF02796.10 gi|390938073|ref|YP_006401811.1| - 0.00024 20.9 0.1 0.00049 19.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|390938073|ref|YP_006401811.1| - 0.0007 19.5 0.0 0.0029 17.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|390938073|ref|YP_006401811.1| - 0.0041 16.6 0.3 0.0041 16.6 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|390938073|ref|YP_006401811.1| - 0.035 13.9 0.1 0.085 12.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix UPF0175 PF03683.8 gi|390938073|ref|YP_006401811.1| - 0.047 13.1 0.1 1 8.8 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_24 PF13412.1 gi|390938073|ref|YP_006401811.1| - 0.064 12.6 0.1 0.17 11.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF438 PF04282.8 gi|390938074|ref|YP_006401812.1| - 1.1e-22 79.5 0.8 1.1e-22 79.5 0.5 2.4 2 0 0 2 2 2 1 Family of unknown function (DUF438) PAS_10 PF13596.1 gi|390938074|ref|YP_006401812.1| - 7.5e-19 67.9 0.1 2.9e-18 66.0 0.0 2.0 2 0 0 2 2 2 1 PAS domain Hemerythrin PF01814.18 gi|390938074|ref|YP_006401812.1| - 1.1e-07 32.1 0.0 2.6e-07 30.8 0.0 1.7 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain PAS_4 PF08448.5 gi|390938074|ref|YP_006401812.1| - 0.00077 19.4 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|390938074|ref|YP_006401812.1| - 0.027 14.8 0.0 0.064 13.6 0.0 1.7 1 0 0 1 1 1 0 PAS domain TAFH PF07531.9 gi|390938074|ref|YP_006401812.1| - 0.068 12.8 3.8 0.76 9.4 0.3 3.3 4 0 0 4 4 4 0 NHR1 homology to TAF HTH_AsnC-type PF13404.1 gi|390938075|ref|YP_006401813.1| - 1.4e-12 46.9 0.1 2.1e-12 46.3 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|390938075|ref|YP_006401813.1| - 5.4e-10 38.8 0.0 1e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|390938075|ref|YP_006401813.1| - 1.3e-09 37.3 0.8 2.4e-09 36.4 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|390938075|ref|YP_006401813.1| - 3.2e-05 23.5 0.1 0.0004 20.0 0.0 2.5 3 1 0 3 3 3 1 MarR family HTH_27 PF13463.1 gi|390938075|ref|YP_006401813.1| - 0.00028 21.1 0.0 0.0026 18.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|390938075|ref|YP_006401813.1| - 0.00069 19.2 0.0 0.0022 17.6 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|390938075|ref|YP_006401813.1| - 0.0012 18.8 0.1 0.0061 16.5 0.0 2.0 1 1 1 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|390938075|ref|YP_006401813.1| - 0.0014 18.1 0.2 0.0027 17.3 0.0 1.5 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_11 PF08279.7 gi|390938075|ref|YP_006401813.1| - 0.002 17.7 0.0 0.0035 16.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|390938075|ref|YP_006401813.1| - 0.014 15.1 0.6 0.057 13.1 0.1 2.0 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB NapD PF03927.8 gi|390938075|ref|YP_006401813.1| - 0.071 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 NapD protein DDRGK PF09756.4 gi|390938075|ref|YP_006401813.1| - 0.078 12.3 0.1 0.16 11.3 0.1 1.5 1 0 0 1 1 1 0 DDRGK domain Rrf2 PF02082.15 gi|390938075|ref|YP_006401813.1| - 0.084 13.0 0.1 1.8 8.7 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|390938075|ref|YP_006401813.1| - 0.092 12.6 0.1 15 5.6 0.0 2.4 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.11 gi|390938075|ref|YP_006401813.1| - 0.11 12.1 0.1 0.24 10.9 0.1 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Desulfoferrodox PF01880.13 gi|390938077|ref|YP_006401815.1| - 4.1e-28 97.4 0.0 4.9e-28 97.2 0.0 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.1 gi|390938077|ref|YP_006401815.1| - 3.5e-05 23.8 0.0 4.5e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY RS4NT PF08071.7 gi|390938077|ref|YP_006401815.1| - 0.15 11.9 0.2 0.29 11.0 0.1 1.5 1 1 0 1 1 1 0 RS4NT (NUC023) domain GCHY-1 PF02649.9 gi|390938079|ref|YP_006401817.1| - 4.4e-25 88.4 0.0 5.7e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 Rho_Binding PF08912.6 gi|390938079|ref|YP_006401817.1| - 0.16 12.2 0.1 0.27 11.5 0.1 1.3 1 0 0 1 1 1 0 Rho Binding MAF_flag10 PF01973.13 gi|390938080|ref|YP_006401818.1| - 2.4e-29 101.9 0.0 3.3e-29 101.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 DUF381 PF04038.7 gi|390938081|ref|YP_006401819.1| - 1.9e-11 43.8 0.0 2.9e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|390938081|ref|YP_006401819.1| - 6.7e-11 41.4 0.0 1e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) Flavoprotein PF02441.14 gi|390938082|ref|YP_006401820.1| - 1.4e-17 63.5 0.0 2.2e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Fer4_6 PF12837.2 gi|390938082|ref|YP_006401820.1| - 9.5e-10 37.9 13.5 1.6e-05 24.5 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|390938082|ref|YP_006401820.1| - 3.1e-07 31.0 6.4 0.0011 19.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|390938082|ref|YP_006401820.1| - 3.8e-07 30.3 11.7 1.8e-06 28.2 8.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|390938082|ref|YP_006401820.1| - 5.8e-07 28.8 13.9 0.00063 19.2 1.6 3.2 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|390938082|ref|YP_006401820.1| - 1.3e-06 28.0 11.7 2e-06 27.4 8.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|390938082|ref|YP_006401820.1| - 2.8e-06 27.0 8.5 4.2e-06 26.5 5.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|390938082|ref|YP_006401820.1| - 1.6e-05 25.0 12.2 2.5e-05 24.4 8.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|390938082|ref|YP_006401820.1| - 0.0012 18.7 5.5 0.0021 17.9 3.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|390938082|ref|YP_006401820.1| - 0.003 17.3 13.4 0.22 11.5 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Ribosomal_L31 PF01197.13 gi|390938082|ref|YP_006401820.1| - 0.0089 16.0 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L31 Fer4_3 PF12798.2 gi|390938082|ref|YP_006401820.1| - 0.011 16.2 11.8 0.056 14.0 1.6 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|390938082|ref|YP_006401820.1| - 0.044 13.8 12.3 0.1 12.6 1.7 2.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|390938082|ref|YP_006401820.1| - 0.56 10.5 12.6 0.56 10.5 1.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|390938082|ref|YP_006401820.1| - 0.95 10.0 12.0 5.5 7.6 0.9 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain zf-CXXC PF02008.15 gi|390938082|ref|YP_006401820.1| - 2.2 8.1 8.6 1.1 9.1 0.9 2.2 2 0 0 2 2 2 0 CXXC zinc finger domain Fer4_4 PF12800.2 gi|390938082|ref|YP_006401820.1| - 7.6 7.1 15.4 5.4 7.6 2.8 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain DUF4346 PF14251.1 gi|390938083|ref|YP_006401821.1| - 4.2e-10 39.3 0.3 0.00057 19.6 0.0 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF4346) CdhD PF03599.11 gi|390938083|ref|YP_006401821.1| - 0.0075 14.8 0.1 0.013 13.9 0.1 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit AIRS_C PF02769.17 gi|390938084|ref|YP_006401822.1| - 2e-23 83.0 0.0 2.8e-23 82.6 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|390938084|ref|YP_006401822.1| - 5.1e-13 49.0 0.1 1.3e-12 47.7 0.1 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HupF_HypC PF01455.13 gi|390938085|ref|YP_006401823.1| - 1.5e-23 82.5 0.5 1.7e-23 82.3 0.3 1.0 1 0 0 1 1 1 1 HupF/HypC family Hexapep PF00132.19 gi|390938085|ref|YP_006401823.1| - 0.018 14.5 0.5 0.037 13.5 0.1 1.8 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) tRNA_bind PF01588.15 gi|390938085|ref|YP_006401823.1| - 0.069 12.9 0.1 0.076 12.8 0.1 1.2 1 0 0 1 1 1 0 Putative tRNA binding domain KOW PF00467.24 gi|390938085|ref|YP_006401823.1| - 0.93 9.3 4.0 17 5.2 0.4 2.6 2 2 0 2 2 2 0 KOW motif Sua5_yciO_yrdC PF01300.13 gi|390938086|ref|YP_006401824.1| - 1.9e-44 151.0 0.0 2.7e-44 150.5 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|390938086|ref|YP_006401824.1| - 3.3e-31 106.3 10.1 1.1e-15 56.7 0.9 2.5 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|390938086|ref|YP_006401824.1| - 4.7e-19 68.2 0.0 1e-18 67.1 0.0 1.6 1 0 0 1 1 1 1 Acylphosphatase FGGY_C PF02782.11 gi|390938086|ref|YP_006401824.1| - 0.063 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain Oxidored_q6 PF01058.17 gi|390938087|ref|YP_006401825.1| - 8.9e-29 99.7 0.5 1.1e-28 99.3 0.3 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.14 gi|390938088|ref|YP_006401826.1| - 1.1e-20 73.7 0.0 1.5e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.14 gi|390938089|ref|YP_006401827.1| - 1.7e-45 155.1 0.1 1.7e-30 105.9 0.1 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|390938089|ref|YP_006401827.1| - 3.7e-10 39.1 4.9 2.6e-09 36.4 0.2 3.1 1 1 2 3 3 3 2 Nickel-dependent hydrogenase DUF3590 PF12148.3 gi|390938089|ref|YP_006401827.1| - 0.082 12.5 1.1 3.1 7.4 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3590) DASH_Dad2 PF08654.5 gi|390938089|ref|YP_006401827.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 DASH complex subunit Dad2 Fer4 PF00037.22 gi|390938090|ref|YP_006401828.1| - 2.9e-14 51.9 12.0 1.5e-07 30.7 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|390938090|ref|YP_006401828.1| - 1e-11 45.0 7.2 1.4e-11 44.5 5.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|390938090|ref|YP_006401828.1| - 1.1e-10 41.2 3.5 7.9e-06 25.6 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|390938090|ref|YP_006401828.1| - 1.2e-10 40.9 5.4 4.5e-05 23.1 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|390938090|ref|YP_006401828.1| - 9.9e-10 37.8 12.8 7.9e-06 25.5 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|390938090|ref|YP_006401828.1| - 2.1e-09 37.4 7.9 3.4e-09 36.8 5.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|390938090|ref|YP_006401828.1| - 2.9e-09 36.3 10.8 0.00015 21.4 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|390938090|ref|YP_006401828.1| - 2.9e-08 33.6 2.8 0.0014 18.5 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|390938090|ref|YP_006401828.1| - 6e-08 33.0 3.6 0.0043 17.4 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|390938090|ref|YP_006401828.1| - 7.6e-08 32.9 6.8 1.6e-07 31.9 4.7 1.5 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|390938090|ref|YP_006401828.1| - 2.1e-07 31.1 4.8 0.0069 16.7 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|390938090|ref|YP_006401828.1| - 0.00017 21.9 15.5 0.027 15.0 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|390938090|ref|YP_006401828.1| - 0.0014 18.7 12.4 0.052 13.8 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain amfpi-1 PF12190.3 gi|390938090|ref|YP_006401828.1| - 0.33 11.4 4.9 2 8.9 0.5 2.1 1 1 1 2 2 2 0 Fungal protease inhibitor Fer4_15 PF13459.1 gi|390938090|ref|YP_006401828.1| - 0.36 11.4 8.3 5.3 7.6 0.1 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|390938090|ref|YP_006401828.1| - 0.46 10.4 4.1 2.5 8.0 0.4 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain MrpF_PhaF PF04066.8 gi|390938091|ref|YP_006401829.1| - 3.5e-08 33.6 6.0 3.5e-08 33.6 4.2 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2484 PF10658.4 gi|390938091|ref|YP_006401829.1| - 7.1 6.8 8.7 13 5.9 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2484) PhaG_MnhG_YufB PF03334.9 gi|390938092|ref|YP_006401830.1| - 4.8e-17 61.7 10.8 5.9e-17 61.4 7.5 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF3084 PF11283.3 gi|390938092|ref|YP_006401830.1| - 0.55 10.1 3.7 0.21 11.4 0.8 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3084) NfeD PF01957.13 gi|390938092|ref|YP_006401830.1| - 1.1 9.4 13.5 0.35 11.0 2.8 2.0 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding Flavi_NS4A PF01350.12 gi|390938092|ref|YP_006401830.1| - 2.9 7.4 4.9 1.5 8.3 1.5 1.8 1 1 1 2 2 2 0 Flavivirus non-structural protein NS4A DUF4040 PF13244.1 gi|390938093|ref|YP_006401831.1| - 3.4e-12 46.1 3.3 3.4e-12 46.1 2.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Trep_Strep PF09605.5 gi|390938093|ref|YP_006401831.1| - 0.13 11.9 8.1 0.029 14.0 3.1 1.6 1 1 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) CreD PF06123.7 gi|390938093|ref|YP_006401831.1| - 0.87 8.0 7.1 0.95 7.9 4.9 1.0 1 0 0 1 1 1 0 Inner membrane protein CreD PIG-Y PF15159.1 gi|390938093|ref|YP_006401831.1| - 6.8 6.9 8.7 2.9 8.1 4.4 1.7 1 1 1 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y MnhB PF04039.8 gi|390938094|ref|YP_006401832.1| - 1.5e-15 57.3 18.0 1.5e-15 57.3 12.5 2.2 3 1 0 3 3 3 1 Domain related to MnhB subunit of Na+/H+ antiporter UPF0233 PF06781.7 gi|390938094|ref|YP_006401832.1| - 7.1 6.3 6.4 3.9 7.1 1.5 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) Oxidored_q2 PF00420.19 gi|390938095|ref|YP_006401833.1| - 2.3e-21 75.1 0.1 2.9e-21 74.8 0.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2648 PF10855.3 gi|390938095|ref|YP_006401833.1| - 3.3 7.2 4.8 13 5.2 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2648) PIG-P PF08510.7 gi|390938095|ref|YP_006401833.1| - 7.6 6.1 6.2 25 4.5 4.3 1.9 1 1 0 1 1 1 0 PIG-P DUF2207 PF09972.4 gi|390938095|ref|YP_006401833.1| - 8.7 4.8 6.1 28 3.1 2.1 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) MNHE PF01899.11 gi|390938096|ref|YP_006401834.1| - 2.1e-42 144.3 0.6 2.5e-42 144.1 0.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MnhB PF04039.8 gi|390938096|ref|YP_006401834.1| - 0.086 12.8 2.7 0.14 12.2 1.9 1.4 1 1 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q1 PF00361.15 gi|390938097|ref|YP_006401835.1| - 1.5e-52 178.5 20.4 1.5e-52 178.5 14.1 3.0 2 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains AAA_19 PF13245.1 gi|390938098|ref|YP_006401836.1| - 0.18 11.5 0.4 0.4 10.4 0.3 1.5 1 1 0 1 1 1 0 Part of AAA domain FtsX PF02687.16 gi|390938098|ref|YP_006401836.1| - 0.37 10.5 8.6 2.2 8.0 6.0 1.8 1 1 0 1 1 1 0 FtsX-like permease family BatA PF07584.6 gi|390938098|ref|YP_006401836.1| - 0.79 9.9 4.9 4.7 7.4 0.7 2.2 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal DUF3068 PF11271.3 gi|390938098|ref|YP_006401836.1| - 1.3 8.0 3.0 2.3 7.2 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3068) NADHdh PF00146.16 gi|390938099|ref|YP_006401837.1| - 1.9e-25 89.5 22.9 2.2e-25 89.4 15.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Glyco_hydro_53 PF07745.8 gi|390938100|ref|YP_006401838.1| - 7.2e-113 376.7 0.1 9.9e-113 376.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 53 DUF2223 PF09985.4 gi|390938100|ref|YP_006401838.1| - 3.9e-48 163.7 2.0 2.1e-47 161.3 0.1 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF2223) Cellulase PF00150.13 gi|390938100|ref|YP_006401838.1| - 2.4e-10 40.0 0.3 3.9e-10 39.4 0.2 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Big_4 PF07532.6 gi|390938100|ref|YP_006401838.1| - 7.5e-10 38.1 0.3 2.1e-09 36.7 0.2 1.8 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 4) Glyco_hydro_cc PF11790.3 gi|390938100|ref|YP_006401838.1| - 4.5e-05 22.9 0.2 0.00014 21.4 0.1 1.8 2 0 0 2 2 2 1 Glycosyl hydrolase catalytic core Na_Ca_ex PF01699.19 gi|390938100|ref|YP_006401838.1| - 0.0089 15.6 1.5 0.011 15.3 0.1 1.8 2 0 0 2 2 2 1 Sodium/calcium exchanger protein Cellulase-like PF12876.2 gi|390938100|ref|YP_006401838.1| - 0.036 14.5 0.0 0.1 13.0 0.0 1.8 1 0 0 1 1 1 0 Sugar-binding cellulase-like SBP_bac_8 PF13416.1 gi|390938101|ref|YP_006401839.1| - 4.1e-30 105.4 0.3 4.1e-30 105.4 0.2 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|390938101|ref|YP_006401839.1| - 7.9e-24 84.9 6.0 7.9e-24 84.9 4.1 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF2561 PF10812.3 gi|390938101|ref|YP_006401839.1| - 0.036 13.6 1.5 0.063 12.8 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2561) SoxE PF06525.6 gi|390938101|ref|YP_006401839.1| - 0.053 12.7 9.5 0.12 11.5 6.6 1.6 1 0 0 1 1 1 0 Sulfocyanin (SoxE) Shisa PF13908.1 gi|390938101|ref|YP_006401839.1| - 0.83 9.7 5.5 1.3 9.1 3.8 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator DUF1628 PF07790.6 gi|390938101|ref|YP_006401839.1| - 0.95 10.2 6.2 2.4 8.9 4.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Neur PF00064.13 gi|390938101|ref|YP_006401839.1| - 3.2 5.7 6.0 4.4 5.2 4.2 1.1 1 0 0 1 1 1 0 Neuraminidase Mucin PF01456.12 gi|390938101|ref|YP_006401839.1| - 4.2 7.1 37.2 7 6.4 25.1 1.7 2 0 0 2 2 2 0 Mucin-like glycoprotein SSP160 PF06933.6 gi|390938101|ref|YP_006401839.1| - 9.6 4.0 24.5 15 3.4 17.0 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 BPD_transp_1 PF00528.17 gi|390938102|ref|YP_006401840.1| - 2.3e-15 56.5 12.3 2.3e-15 56.5 8.5 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Sec7_N PF12783.2 gi|390938102|ref|YP_006401840.1| - 0.0072 15.7 0.1 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 Guanine nucleotide exchange factor in Golgi transport N-terminal BPD_transp_1 PF00528.17 gi|390938103|ref|YP_006401841.1| - 3.1e-11 43.1 21.6 3.1e-11 43.1 15.0 2.7 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF389 PF04087.9 gi|390938103|ref|YP_006401841.1| - 3.6 7.5 15.5 0.27 11.1 2.0 2.6 3 1 0 3 3 3 0 Domain of unknown function (DUF389) Glyco_hydro_35 PF01301.14 gi|390938104|ref|YP_006401842.1| - 4.8e-61 206.8 2.5 8.2e-61 206.0 0.1 2.4 3 0 0 3 3 3 1 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.10 gi|390938104|ref|YP_006401842.1| - 2.1e-08 33.6 0.9 4.9e-07 29.2 0.6 2.4 1 1 0 1 1 1 1 Beta-galactosidase BetaGal_dom2 PF10435.4 gi|390938104|ref|YP_006401842.1| - 1.5e-06 27.6 0.0 2.5e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Beta-galactosidase, domain 2 BetaGal_dom4_5 PF13364.1 gi|390938104|ref|YP_006401842.1| - 1.6e-05 25.1 0.0 0.0019 18.4 0.0 2.8 2 0 0 2 2 2 1 Beta-galactosidase jelly roll domain Wzy_C PF04932.10 gi|390938105|ref|YP_006401843.1| - 0.057 13.1 7.7 0.086 12.6 5.3 1.3 1 1 0 1 1 1 0 O-Antigen ligase DUF2976 PF11190.3 gi|390938105|ref|YP_006401843.1| - 0.35 10.4 2.4 0.25 10.8 0.5 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) LAB_N PF07578.6 gi|390938105|ref|YP_006401843.1| - 2.7 7.9 6.8 47 3.9 4.6 2.2 1 1 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain DUF1689 PF07954.6 gi|390938106|ref|YP_006401844.1| - 0.091 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1689) COX14 PF14880.1 gi|390938106|ref|YP_006401844.1| - 0.3 10.7 4.8 0.43 10.2 0.0 2.4 2 0 0 2 2 2 0 Cytochrome oxidase c assembly SBP_bac_5 PF00496.17 gi|390938107|ref|YP_006401845.1| - 6.2e-12 45.0 5.6 1e-09 37.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4064 PF13273.1 gi|390938107|ref|YP_006401845.1| - 0.081 13.0 2.1 0.22 11.6 1.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) NPV_P10 PF05531.7 gi|390938107|ref|YP_006401845.1| - 0.15 12.3 6.3 0.082 13.1 1.0 2.8 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4200 PF13863.1 gi|390938107|ref|YP_006401845.1| - 1.2 9.1 2.8 2.5 8.0 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) DUF4618 PF15397.1 gi|390938107|ref|YP_006401845.1| - 8.7 5.5 10.1 2.7 7.2 0.3 3.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4618) BPD_transp_1 PF00528.17 gi|390938108|ref|YP_006401846.1| - 3.1e-29 101.8 16.4 3.1e-29 101.8 11.4 2.7 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component MacB_PCD PF12704.2 gi|390938108|ref|YP_006401846.1| - 0.0043 16.6 0.5 0.83 9.1 0.0 2.3 2 0 0 2 2 2 2 MacB-like periplasmic core domain BPD_transp_1 PF00528.17 gi|390938109|ref|YP_006401847.1| - 2.4e-25 89.1 17.1 2.4e-25 89.1 11.9 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Dak1 PF02733.12 gi|390938109|ref|YP_006401847.1| - 0.14 10.7 0.1 0.21 10.1 0.1 1.2 1 0 0 1 1 1 0 Dak1 domain Radical_SAM PF04055.16 gi|390938110|ref|YP_006401848.1| - 2.6e-20 73.2 0.1 5e-20 72.3 0.0 1.4 2 0 0 2 2 2 1 Radical SAM superfamily ABC_tran PF00005.22 gi|390938111|ref|YP_006401849.1| - 4e-31 108.1 0.0 5.3e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|390938111|ref|YP_006401849.1| - 7e-19 67.9 0.2 1.2e-18 67.2 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|390938111|ref|YP_006401849.1| - 2.6e-10 40.7 0.3 2.7e-08 34.1 0.0 2.1 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|390938111|ref|YP_006401849.1| - 9e-06 25.0 0.8 0.00016 21.0 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|390938111|ref|YP_006401849.1| - 5.1e-05 22.7 0.0 0.0021 17.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|390938111|ref|YP_006401849.1| - 0.001 18.6 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|390938111|ref|YP_006401849.1| - 0.0042 16.2 0.1 0.1 11.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|390938111|ref|YP_006401849.1| - 0.0077 15.7 0.0 0.017 14.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|390938111|ref|YP_006401849.1| - 0.0098 15.0 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|390938111|ref|YP_006401849.1| - 0.012 15.8 0.1 0.065 13.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|390938111|ref|YP_006401849.1| - 0.012 15.7 0.6 0.14 12.3 0.4 2.1 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|390938111|ref|YP_006401849.1| - 0.03 14.4 0.1 0.061 13.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|390938111|ref|YP_006401849.1| - 0.055 13.4 0.1 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|390938111|ref|YP_006401849.1| - 0.079 12.1 0.0 0.7 9.0 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|390938111|ref|YP_006401849.1| - 0.14 12.4 0.0 0.67 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|390938111|ref|YP_006401849.1| - 0.14 11.2 0.2 0.94 8.5 0.0 2.1 2 0 0 2 2 2 0 KaiC PRK PF00485.13 gi|390938111|ref|YP_006401849.1| - 0.14 11.6 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.22 gi|390938112|ref|YP_006401850.1| - 8.9e-30 103.7 0.0 1.2e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|390938112|ref|YP_006401850.1| - 4.9e-19 68.4 0.4 9e-19 67.5 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|390938112|ref|YP_006401850.1| - 7.9e-08 32.6 0.1 1.4e-05 25.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|390938112|ref|YP_006401850.1| - 0.006 16.7 0.0 0.019 15.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|390938112|ref|YP_006401850.1| - 0.0076 15.3 0.1 0.6 9.1 0.0 2.2 2 0 0 2 2 2 1 KaiC AAA_18 PF13238.1 gi|390938112|ref|YP_006401850.1| - 0.012 15.8 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|390938112|ref|YP_006401850.1| - 0.015 14.8 0.1 0.026 14.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain G-alpha PF00503.15 gi|390938112|ref|YP_006401850.1| - 0.048 12.3 0.2 1.2 7.6 0.0 2.0 1 1 1 2 2 2 0 G-protein alpha subunit AAA_16 PF13191.1 gi|390938112|ref|YP_006401850.1| - 0.11 12.4 0.1 0.22 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.1 gi|390938112|ref|YP_006401850.1| - 0.14 10.6 0.1 0.31 9.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|390938112|ref|YP_006401850.1| - 0.15 12.3 0.2 0.24 11.6 0.2 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|390938112|ref|YP_006401850.1| - 0.19 10.5 0.0 0.31 9.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ACP_syn_III_C PF08541.5 gi|390938113|ref|YP_006401851.1| - 4e-12 45.9 0.0 2.2e-11 43.5 0.0 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|390938113|ref|YP_006401851.1| - 0.00043 19.8 1.0 0.00089 18.8 0.3 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.5 gi|390938113|ref|YP_006401851.1| - 0.00068 19.1 0.0 0.014 14.9 0.0 2.2 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.18 gi|390938113|ref|YP_006401851.1| - 0.079 11.9 0.1 0.21 10.5 0.1 1.5 2 0 0 2 2 2 0 Thiolase, N-terminal domain DUF35_N PF12172.3 gi|390938114|ref|YP_006401852.1| - 6.6e-10 38.6 1.7 9.6e-10 38.0 1.2 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|390938114|ref|YP_006401852.1| - 6e-05 23.1 0.0 8.4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain Methyltransf_13 PF08421.6 gi|390938114|ref|YP_006401852.1| - 0.0033 16.8 0.3 0.59 9.6 0.0 2.7 3 0 0 3 3 3 2 Putative zinc binding domain DZR PF12773.2 gi|390938114|ref|YP_006401852.1| - 0.041 13.6 0.6 0.065 13.0 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|390938114|ref|YP_006401852.1| - 0.082 12.1 2.1 0.13 11.5 1.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain HMG-CoA_red PF00368.13 gi|390938115|ref|YP_006401853.1| - 0.13 10.9 0.0 0.2 10.2 0.0 1.2 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A reductase Radical_SAM PF04055.16 gi|390938116|ref|YP_006401854.1| - 1.1e-10 41.9 0.0 3.6e-10 40.2 0.0 1.8 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|390938116|ref|YP_006401854.1| - 0.002 17.9 0.0 0.005 16.7 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain Aminotran_1_2 PF00155.16 gi|390938117|ref|YP_006401855.1| - 5.3e-35 121.0 0.0 5.9e-35 120.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|390938117|ref|YP_006401855.1| - 2.2e-07 29.7 0.0 3.2e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.16 gi|390938117|ref|YP_006401855.1| - 0.0016 17.6 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|390938117|ref|YP_006401855.1| - 0.0019 17.3 0.0 0.0045 16.0 0.0 1.6 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_3 PF01381.17 gi|390938119|ref|YP_006401857.1| - 6.5e-05 22.7 0.8 0.0001 22.0 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.1 gi|390938119|ref|YP_006401857.1| - 0.0018 17.8 0.1 0.0037 16.8 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain NUMOD1 PF07453.8 gi|390938119|ref|YP_006401857.1| - 0.003 17.3 0.6 0.018 14.8 0.0 2.5 3 0 0 3 3 3 1 NUMOD1 domain HTH_24 PF13412.1 gi|390938119|ref|YP_006401857.1| - 0.0034 16.7 0.1 0.0071 15.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|390938119|ref|YP_006401857.1| - 0.0037 17.2 0.1 0.0075 16.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.3 gi|390938119|ref|YP_006401857.1| - 0.0049 16.4 0.4 0.17 11.5 0.0 2.3 2 0 0 2 2 2 1 Tc3 transposase HTH_Tnp_1 PF01527.15 gi|390938119|ref|YP_006401857.1| - 0.0055 16.6 0.0 0.0085 16.0 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_10 PF04967.7 gi|390938119|ref|YP_006401857.1| - 0.0077 15.7 0.2 0.1 12.1 0.0 2.6 3 0 0 3 3 3 1 HTH DNA binding domain HTH_Tnp_IS630 PF01710.11 gi|390938119|ref|YP_006401857.1| - 0.0093 15.6 0.0 0.014 15.0 0.0 1.4 1 1 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.1 gi|390938119|ref|YP_006401857.1| - 0.012 14.8 0.0 0.022 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.7 gi|390938119|ref|YP_006401857.1| - 0.012 15.2 0.3 0.023 14.3 0.2 1.5 1 0 0 1 1 1 0 HTH domain MerR PF00376.18 gi|390938119|ref|YP_006401857.1| - 0.018 14.6 0.1 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein HTH_29 PF13551.1 gi|390938119|ref|YP_006401857.1| - 0.043 13.9 0.1 0.061 13.4 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix Rep_fac_C PF08542.6 gi|390938119|ref|YP_006401857.1| - 0.074 13.0 0.1 0.15 12.0 0.0 1.7 1 1 0 1 1 1 0 Replication factor C C-terminal domain MerR_1 PF13411.1 gi|390938119|ref|YP_006401857.1| - 0.077 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_5 PF01022.15 gi|390938119|ref|YP_006401857.1| - 0.081 12.6 0.1 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_26 PF13443.1 gi|390938119|ref|YP_006401857.1| - 0.086 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|390938119|ref|YP_006401857.1| - 0.098 12.8 0.1 0.27 11.4 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|390938119|ref|YP_006401857.1| - 0.11 11.9 1.0 0.42 10.1 0.0 2.3 3 0 0 3 3 3 0 Sigma-70, region 4 SSV1_ORF_D-335 PF07935.6 gi|390938121|ref|YP_006401859.1| - 0.07 12.8 0.7 0.3 10.8 0.5 2.1 1 1 0 1 1 1 0 ORF D-335-like protein DUF2192 PF09958.4 gi|390938122|ref|YP_006401860.1| - 1.9e-76 256.3 1.3 2.2e-76 256.1 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Radical_SAM PF04055.16 gi|390938123|ref|YP_006401861.1| - 5.1e-10 39.7 0.1 1.3e-09 38.4 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|390938123|ref|YP_006401861.1| - 0.17 11.3 8.4 2 7.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) DUF650 PF04894.7 gi|390938124|ref|YP_006401862.1| - 5.7e-97 324.4 0.0 7.2e-97 324.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|390938124|ref|YP_006401862.1| - 3.6e-34 116.6 0.0 5.4e-34 116.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) DUF913 PF06025.7 gi|390938124|ref|YP_006401862.1| - 0.055 12.2 0.0 0.084 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) PALP PF00291.20 gi|390938125|ref|YP_006401863.1| - 2.1e-64 217.7 0.0 2.3e-64 217.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme FAD_binding_5 PF00941.16 gi|390938126|ref|YP_006401864.1| - 2.5e-36 124.6 0.0 3.5e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|390938126|ref|YP_006401864.1| - 2.7e-14 52.9 0.0 4.6e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain DUF2528 PF10800.3 gi|390938126|ref|YP_006401864.1| - 0.043 14.1 0.1 0.094 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2528) Fer2_2 PF01799.15 gi|390938127|ref|YP_006401865.1| - 5.9e-29 99.7 0.0 9.4e-29 99.1 0.0 1.3 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|390938127|ref|YP_006401865.1| - 2.5e-07 30.3 0.2 2.5e-07 30.3 0.2 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|390938127|ref|YP_006401865.1| - 4.2e-05 23.3 0.1 6.7e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|390938127|ref|YP_006401865.1| - 0.0005 19.8 0.2 0.0041 16.8 0.2 2.2 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain S4 PF01479.20 gi|390938127|ref|YP_006401865.1| - 0.16 11.3 0.5 1 8.8 0.0 2.4 3 0 0 3 3 3 0 S4 domain NADH_4Fe-4S PF10589.4 gi|390938127|ref|YP_006401865.1| - 0.19 10.8 2.4 5.6 6.1 0.1 3.1 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Ald_Xan_dh_C2 PF02738.13 gi|390938128|ref|YP_006401866.1| - 3.8e-150 500.8 0.0 5e-150 500.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|390938128|ref|YP_006401866.1| - 1.1e-25 89.8 0.0 1.9e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ABC_tran PF00005.22 gi|390938130|ref|YP_006401868.1| - 5.6e-23 81.7 0.0 7.6e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938130|ref|YP_006401868.1| - 1.9e-11 44.4 0.3 0.00011 22.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|390938130|ref|YP_006401868.1| - 5.3e-05 22.5 0.0 0.19 10.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|390938130|ref|YP_006401868.1| - 0.00025 20.2 0.0 0.21 10.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain Zeta_toxin PF06414.7 gi|390938130|ref|YP_006401868.1| - 0.0021 17.2 0.0 0.0031 16.6 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.1 gi|390938130|ref|YP_006401868.1| - 0.0028 18.0 0.7 0.0054 17.0 0.5 1.4 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|390938130|ref|YP_006401868.1| - 0.0035 16.2 0.0 0.0047 15.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|390938130|ref|YP_006401868.1| - 0.0035 17.3 0.0 0.031 14.2 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|390938130|ref|YP_006401868.1| - 0.0098 16.0 0.1 0.072 13.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|390938130|ref|YP_006401868.1| - 0.044 13.3 0.1 0.085 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|390938130|ref|YP_006401868.1| - 0.095 12.5 0.0 0.18 11.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|390938130|ref|YP_006401868.1| - 0.13 12.0 0.1 0.24 11.1 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|390938130|ref|YP_006401868.1| - 0.14 11.5 0.6 0.26 10.7 0.4 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.1 gi|390938130|ref|YP_006401868.1| - 0.16 11.9 0.0 2.4 8.1 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TroA PF01297.12 gi|390938131|ref|YP_006401869.1| - 2.4e-28 99.0 0.0 3e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family ABC-3 PF00950.12 gi|390938132|ref|YP_006401870.1| - 3.3e-21 75.7 30.5 3.3e-21 75.7 21.2 1.4 1 1 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|390938132|ref|YP_006401870.1| - 0.057 12.2 36.9 0.032 13.0 23.5 2.0 1 1 0 1 1 1 0 FecCD transport family DAG1 PF05454.6 gi|390938132|ref|YP_006401870.1| - 0.18 10.9 0.7 0.29 10.2 0.5 1.3 1 0 0 1 1 1 0 Dystroglycan (Dystrophin-associated glycoprotein 1) OCIA PF07051.6 gi|390938132|ref|YP_006401870.1| - 0.64 9.4 2.0 1.2 8.6 0.4 2.1 2 0 0 2 2 2 0 Ovarian carcinoma immunoreactive antigen (OCIA) RHH_3 PF12651.2 gi|390938133|ref|YP_006401871.1| - 0.089 12.5 0.0 0.19 11.5 0.0 1.7 1 1 0 1 1 1 0 Ribbon-helix-helix domain Methyltransf_26 PF13659.1 gi|390938134|ref|YP_006401872.1| - 3.4e-12 46.4 0.0 5.7e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|390938134|ref|YP_006401872.1| - 8.9e-05 21.9 0.0 0.00014 21.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Spermine_synth PF01564.12 gi|390938134|ref|YP_006401872.1| - 0.005 15.7 0.0 0.0071 15.3 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase PrmA PF06325.8 gi|390938134|ref|YP_006401872.1| - 0.0076 15.4 0.0 0.014 14.5 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|390938134|ref|YP_006401872.1| - 0.015 14.3 0.3 0.81 8.7 0.0 2.9 2 1 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_30 PF05430.6 gi|390938134|ref|YP_006401872.1| - 0.039 13.6 0.0 0.087 12.5 0.0 1.6 1 1 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_11 PF08241.7 gi|390938134|ref|YP_006401872.1| - 0.07 13.6 0.0 0.81 10.2 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain Glutaredoxin PF00462.19 gi|390938134|ref|YP_006401872.1| - 0.089 12.7 0.1 0.33 10.9 0.0 1.9 1 1 0 1 1 1 0 Glutaredoxin MMS1_N PF10433.4 gi|390938134|ref|YP_006401872.1| - 0.11 10.5 0.0 0.15 10.1 0.0 1.1 1 0 0 1 1 1 0 Mono-functional DNA-alkylating methyl methanesulfonate N-term GntR PF00392.16 gi|390938135|ref|YP_006401873.1| - 3.3 7.2 5.1 2.7 7.4 0.1 3.0 4 0 0 4 4 4 0 Bacterial regulatory proteins, gntR family DUF1886 PF09171.5 gi|390938136|ref|YP_006401874.1| - 0.0078 15.2 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) DUF2419 PF10343.4 gi|390938136|ref|YP_006401874.1| - 0.013 14.7 0.0 0.052 12.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2419) NUC130_3NT PF08158.7 gi|390938138|ref|YP_006401876.1| - 0.03 14.5 0.0 0.058 13.6 0.0 1.5 1 1 0 1 1 1 0 NUC130/3NT domain TraF_2 PF13729.1 gi|390938138|ref|YP_006401876.1| - 0.13 11.0 0.0 0.13 11.0 0.0 1.0 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein POR PF01558.13 gi|390938139|ref|YP_006401877.1| - 1.5e-29 103.1 0.0 1.7e-29 102.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|390938140|ref|YP_006401878.1| - 1.7e-19 69.8 0.0 3.4e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|390938140|ref|YP_006401878.1| - 1.7e-15 57.1 0.1 3.3e-15 56.2 0.0 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|390938140|ref|YP_006401878.1| - 1.1e-11 43.8 10.9 1.9e-07 30.3 2.0 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|390938140|ref|YP_006401878.1| - 6.6e-10 38.4 11.4 2e-05 24.2 1.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|390938140|ref|YP_006401878.1| - 3.6e-08 32.8 12.5 0.00051 19.8 1.2 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|390938140|ref|YP_006401878.1| - 4.4e-06 26.9 22.7 0.00025 21.3 9.0 2.8 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|390938140|ref|YP_006401878.1| - 7.4e-06 25.7 11.7 0.00017 21.3 8.3 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|390938140|ref|YP_006401878.1| - 1.1e-05 25.0 11.0 4.3e-05 23.2 7.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|390938140|ref|YP_006401878.1| - 4.1e-05 23.7 10.5 0.00014 22.0 7.3 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|390938140|ref|YP_006401878.1| - 0.00012 22.7 5.7 0.00089 19.9 0.5 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|390938140|ref|YP_006401878.1| - 0.0019 18.3 2.3 0.0019 18.3 1.6 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|390938140|ref|YP_006401878.1| - 0.0075 16.2 11.4 0.035 14.1 7.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Transket_pyr PF02779.19 gi|390938140|ref|YP_006401878.1| - 0.017 14.5 0.1 0.059 12.8 0.0 1.9 2 1 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_18 PF13746.1 gi|390938140|ref|YP_006401878.1| - 0.039 14.3 6.3 2.5 8.6 0.6 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|390938140|ref|YP_006401878.1| - 0.049 13.9 8.5 0.31 11.4 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|390938140|ref|YP_006401878.1| - 0.072 12.5 0.1 0.21 11.0 0.1 1.9 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_15 PF13459.1 gi|390938140|ref|YP_006401878.1| - 0.14 12.7 12.5 0.76 10.3 1.7 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|390938140|ref|YP_006401878.1| - 0.21 11.4 3.6 0.55 10.1 2.5 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|390938140|ref|YP_006401878.1| - 1.7 9.1 11.8 4.3 7.8 1.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain WHEP-TRS PF00458.15 gi|390938141|ref|YP_006401879.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 WHEP-TRS domain Metallophos_2 PF12850.2 gi|390938143|ref|YP_006401881.1| - 2.9e-10 40.2 0.0 5.4e-10 39.3 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|390938143|ref|YP_006401881.1| - 0.00023 20.6 1.3 0.0051 16.2 0.9 2.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Lon_C PF05362.8 gi|390938144|ref|YP_006401882.1| - 1.8e-11 43.7 0.0 3.2e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain Peptidase_M48 PF01435.13 gi|390938145|ref|YP_006401883.1| - 6.9e-46 156.6 0.0 1.3e-45 155.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Yip1 PF04893.12 gi|390938145|ref|YP_006401883.1| - 0.45 9.9 28.4 1.5 8.2 0.4 2.4 2 0 0 2 2 2 0 Yip1 domain DUF3366 PF11846.3 gi|390938145|ref|YP_006401883.1| - 8.4 6.2 7.6 5.9 6.7 1.8 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF3366) DUF2910 PF11139.3 gi|390938146|ref|YP_006401884.1| - 5.5e-07 28.9 6.3 1.3e-06 27.6 0.9 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF2910) Thioredoxin_7 PF13899.1 gi|390938147|ref|YP_006401885.1| - 2.1e-11 43.6 0.0 5.8e-11 42.2 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|390938147|ref|YP_006401885.1| - 5.4e-05 23.3 0.0 0.00016 21.8 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|390938147|ref|YP_006401885.1| - 0.012 15.6 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin DUF1673 PF07895.6 gi|390938147|ref|YP_006401885.1| - 0.022 14.2 0.1 0.028 13.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) ODV-E18 PF10717.4 gi|390938147|ref|YP_006401885.1| - 0.063 12.7 0.2 0.094 12.1 0.1 1.4 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Pput2613-deam PF14427.1 gi|390938147|ref|YP_006401885.1| - 0.065 12.9 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 Pput_2613-like deaminase CcoS PF03597.10 gi|390938147|ref|YP_006401885.1| - 0.11 11.9 4.6 0.2 11.1 3.2 1.4 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type DHH PF01368.15 gi|390938148|ref|YP_006401886.1| - 0.0002 21.0 0.0 0.00035 20.2 0.0 1.3 1 0 0 1 1 1 1 DHH family Glyco_hydro_57 PF03065.10 gi|390938149|ref|YP_006401887.1| - 8.5e-37 126.8 4.3 8.5e-37 126.8 3.0 2.1 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 A2M_N PF01835.14 gi|390938149|ref|YP_006401887.1| - 0.039 14.1 0.0 0.11 12.8 0.0 1.8 1 0 0 1 1 1 0 MG2 domain Glycos_transf_1 PF00534.15 gi|390938150|ref|YP_006401888.1| - 1.1e-25 90.0 0.0 2.4e-25 88.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|390938150|ref|YP_006401888.1| - 7.3e-22 78.0 0.0 1.2e-21 77.3 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|390938150|ref|YP_006401888.1| - 1.6e-11 44.4 0.0 3.1e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|390938150|ref|YP_006401888.1| - 1.1e-10 41.8 0.0 2.7e-10 40.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|390938150|ref|YP_006401888.1| - 0.00019 21.6 0.0 0.00046 20.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|390938150|ref|YP_006401888.1| - 0.0041 16.8 0.0 2.6 7.7 0.0 2.4 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|390938150|ref|YP_006401888.1| - 0.023 14.4 0.1 4.1 7.2 0.1 3.3 2 1 0 2 2 2 0 Glycosyl transferase 4-like DUF1926 PF09095.6 gi|390938151|ref|YP_006401889.1| - 2e-41 142.0 0.0 6.3e-39 133.8 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF1926) Glyco_hydro_57 PF03065.10 gi|390938151|ref|YP_006401889.1| - 5.9e-33 114.2 0.1 6.2e-32 110.8 0.1 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1925 PF09094.6 gi|390938151|ref|YP_006401889.1| - 2.9e-32 110.4 0.9 5.1e-32 109.6 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Ribosomal_L9_N PF01281.14 gi|390938151|ref|YP_006401889.1| - 0.12 11.6 0.0 0.73 9.1 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein L9, N-terminal domain Glyco_hydro_57 PF03065.10 gi|390938152|ref|YP_006401890.1| - 3.4e-71 240.0 0.0 1.5e-70 237.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|390938152|ref|YP_006401890.1| - 0.03 13.9 0.0 0.1 12.2 0.0 1.9 2 0 0 2 2 2 0 Polysaccharide deacetylase HTH_24 PF13412.1 gi|390938154|ref|YP_006401892.1| - 2.7e-09 36.2 0.4 6.1e-09 35.1 0.0 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|390938154|ref|YP_006401892.1| - 1.4e-08 34.4 3.5 4.3e-07 29.6 0.0 3.0 3 0 0 3 3 3 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|390938154|ref|YP_006401892.1| - 1.6e-07 30.8 0.4 5.1e-07 29.2 0.0 1.9 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|390938154|ref|YP_006401892.1| - 1.8e-07 30.7 0.0 3.2e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|390938154|ref|YP_006401892.1| - 7.9e-07 28.6 0.0 1.9e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|390938154|ref|YP_006401892.1| - 8.7e-07 28.6 0.0 1.7e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|390938154|ref|YP_006401892.1| - 1.3e-06 28.4 0.0 2.5e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|390938154|ref|YP_006401892.1| - 4.5e-06 26.6 0.0 1.1e-05 25.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|390938154|ref|YP_006401892.1| - 8.9e-06 25.3 0.4 1.9e-05 24.2 0.0 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|390938154|ref|YP_006401892.1| - 1.3e-05 25.1 0.0 2.5e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|390938154|ref|YP_006401892.1| - 1.3e-05 24.8 0.0 3.2e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|390938154|ref|YP_006401892.1| - 1.3e-05 24.6 0.0 2.9e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|390938154|ref|YP_006401892.1| - 1.9e-05 24.1 0.0 5.1e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_Mga PF08280.6 gi|390938154|ref|YP_006401892.1| - 3e-05 23.6 0.1 0.00013 21.6 0.0 2.0 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.15 gi|390938154|ref|YP_006401892.1| - 4.4e-05 23.0 0.1 0.00018 21.1 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family RPA_C PF08784.6 gi|390938154|ref|YP_006401892.1| - 7.4e-05 23.1 0.0 0.00014 22.2 0.0 1.4 1 0 0 1 1 1 1 Replication protein A C terminal HTH_DeoR PF08220.7 gi|390938154|ref|YP_006401892.1| - 8.8e-05 21.9 0.0 0.00022 20.6 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_29 PF13551.1 gi|390938154|ref|YP_006401892.1| - 9.4e-05 22.5 0.1 0.00091 19.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix GntR PF00392.16 gi|390938154|ref|YP_006401892.1| - 0.00014 21.2 0.0 0.00032 20.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|390938154|ref|YP_006401892.1| - 0.00018 21.0 0.0 0.00029 20.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|390938154|ref|YP_006401892.1| - 0.00026 20.5 0.0 0.00059 19.3 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_27 PF13463.1 gi|390938154|ref|YP_006401892.1| - 0.00028 21.1 0.3 0.0011 19.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|390938154|ref|YP_006401892.1| - 0.00041 19.7 0.0 0.00076 18.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|390938154|ref|YP_006401892.1| - 0.00049 19.9 0.1 0.0013 18.5 0.0 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_3 PF01381.17 gi|390938154|ref|YP_006401892.1| - 0.00074 19.3 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix FeoC PF09012.5 gi|390938154|ref|YP_006401892.1| - 0.0011 18.6 0.0 0.0025 17.4 0.0 1.6 1 0 0 1 1 1 1 FeoC like transcriptional regulator MerR PF00376.18 gi|390938154|ref|YP_006401892.1| - 0.0015 18.0 0.3 0.017 14.6 0.2 2.2 1 1 0 1 1 1 1 MerR family regulatory protein Sigma70_ECF PF07638.6 gi|390938154|ref|YP_006401892.1| - 0.0017 18.0 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 ECF sigma factor MerR_1 PF13411.1 gi|390938154|ref|YP_006401892.1| - 0.003 17.2 0.0 0.0078 15.9 0.0 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein GerE PF00196.14 gi|390938154|ref|YP_006401892.1| - 0.0031 16.7 0.0 0.0052 16.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_40 PF14493.1 gi|390938154|ref|YP_006401892.1| - 0.0034 17.5 0.1 0.0083 16.3 0.0 1.7 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|390938154|ref|YP_006401892.1| - 0.0035 16.8 0.0 0.006 16.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain SelB-wing_2 PF09106.6 gi|390938154|ref|YP_006401892.1| - 0.0042 16.9 0.0 0.0082 16.0 0.0 1.4 1 0 0 1 1 1 1 Elongation factor SelB, winged helix HTH_7 PF02796.10 gi|390938154|ref|YP_006401892.1| - 0.0043 16.8 0.0 0.0078 16.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_Tnp_1 PF01527.15 gi|390938154|ref|YP_006401892.1| - 0.0049 16.7 0.0 0.0082 16.0 0.0 1.4 1 0 0 1 1 1 1 Transposase RP-C PF03428.8 gi|390938154|ref|YP_006401892.1| - 0.0058 16.1 0.0 0.0096 15.3 0.0 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain FaeA PF04703.7 gi|390938154|ref|YP_006401892.1| - 0.012 15.7 0.0 0.03 14.4 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein EAP30 PF04157.11 gi|390938154|ref|YP_006401892.1| - 0.016 14.3 0.0 0.03 13.4 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family IF2_N PF04760.10 gi|390938154|ref|YP_006401892.1| - 0.023 14.3 0.0 0.047 13.3 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Penicillinase_R PF03965.11 gi|390938154|ref|YP_006401892.1| - 0.025 14.6 0.1 0.094 12.8 0.0 1.8 2 0 0 2 2 2 0 Penicillinase repressor DUF2250 PF10007.4 gi|390938154|ref|YP_006401892.1| - 0.036 13.9 0.1 0.076 12.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HemN_C PF06969.11 gi|390938154|ref|YP_006401892.1| - 0.036 14.1 0.0 0.078 13.0 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain DUF771 PF05595.6 gi|390938154|ref|YP_006401892.1| - 0.045 13.6 0.2 1 9.3 0.0 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF771) Sigma70_r4 PF04545.11 gi|390938154|ref|YP_006401892.1| - 0.047 13.0 0.1 0.093 12.0 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_26 PF13443.1 gi|390938154|ref|YP_006401892.1| - 0.048 13.8 0.0 0.087 13.0 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_CodY PF08222.6 gi|390938154|ref|YP_006401892.1| - 0.048 13.0 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.3 gi|390938154|ref|YP_006401892.1| - 0.052 13.2 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 Tc3 transposase Mga PF05043.8 gi|390938154|ref|YP_006401892.1| - 0.053 13.8 0.1 0.16 12.2 0.0 1.8 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_17 PF12728.2 gi|390938154|ref|YP_006401892.1| - 0.056 13.7 0.3 0.17 12.1 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain SgrR_N PF12793.2 gi|390938154|ref|YP_006401892.1| - 0.056 13.4 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_19 PF12844.2 gi|390938154|ref|YP_006401892.1| - 0.059 13.4 0.3 0.33 11.0 0.0 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|390938154|ref|YP_006401892.1| - 0.063 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 B-block_TFIIIC PF04182.7 gi|390938154|ref|YP_006401892.1| - 0.074 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DDRGK PF09756.4 gi|390938154|ref|YP_006401892.1| - 0.082 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain z-alpha PF02295.12 gi|390938154|ref|YP_006401892.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_AsnC-type PF13404.1 gi|390938154|ref|YP_006401892.1| - 0.23 11.0 0.8 0.65 9.5 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain ABC2_membrane_3 PF12698.2 gi|390938155|ref|YP_006401893.1| - 2.8e-23 82.5 23.9 3.3e-23 82.2 16.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|390938155|ref|YP_006401893.1| - 1.2e-12 47.3 21.4 1.6e-12 46.8 14.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|390938155|ref|YP_006401893.1| - 1.1e-05 24.6 33.4 4.8e-05 22.6 23.1 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein LAGLIDADG_3 PF14528.1 gi|390938155|ref|YP_006401893.1| - 0.082 13.1 0.1 0.23 11.7 0.1 1.8 1 0 0 1 1 1 0 LAGLIDADG-like domain ABC_tran PF00005.22 gi|390938156|ref|YP_006401894.1| - 7.7e-26 91.0 0.0 1.1e-25 90.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938156|ref|YP_006401894.1| - 4.8e-15 56.2 0.2 1.6e-07 31.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SRP54 PF00448.17 gi|390938156|ref|YP_006401894.1| - 0.003 17.0 0.0 0.0068 15.8 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|390938156|ref|YP_006401894.1| - 0.0062 16.0 0.2 0.011 15.2 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|390938156|ref|YP_006401894.1| - 0.0063 16.8 0.0 0.0083 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|390938156|ref|YP_006401894.1| - 0.012 14.8 0.1 0.81 8.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|390938156|ref|YP_006401894.1| - 0.014 14.4 0.0 2.6 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|390938156|ref|YP_006401894.1| - 0.025 13.0 0.1 1.1 7.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|390938156|ref|YP_006401894.1| - 0.029 13.9 0.0 0.061 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|390938156|ref|YP_006401894.1| - 0.039 13.6 0.1 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|390938156|ref|YP_006401894.1| - 0.049 13.8 0.0 0.086 13.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|390938156|ref|YP_006401894.1| - 0.06 14.1 0.1 0.1 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|390938156|ref|YP_006401894.1| - 0.061 13.0 0.3 0.13 11.9 0.2 1.5 1 0 0 1 1 1 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|390938156|ref|YP_006401894.1| - 0.074 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein GSCFA PF08885.6 gi|390938157|ref|YP_006401895.1| - 0.026 14.0 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 GSCFA family Aldolase_2 PF10120.4 gi|390938158|ref|YP_006401896.1| - 5.9e-33 113.6 0.0 8.1e-33 113.1 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_24 PF13412.1 gi|390938158|ref|YP_006401896.1| - 0.0013 18.0 1.3 0.026 13.9 0.1 2.5 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|390938158|ref|YP_006401896.1| - 0.0039 16.7 0.0 0.0094 15.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.1 gi|390938158|ref|YP_006401896.1| - 0.0086 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|390938158|ref|YP_006401896.1| - 0.058 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_26 PF13443.1 gi|390938158|ref|YP_006401896.1| - 0.092 12.9 0.1 0.22 11.7 0.1 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_38 PF13936.1 gi|390938158|ref|YP_006401896.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ApbA_C PF08546.6 gi|390938159|ref|YP_006401897.1| - 2.9e-25 88.6 0.0 9.2e-25 87.0 0.0 1.9 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|390938159|ref|YP_006401897.1| - 2.2e-23 82.4 0.0 3.5e-23 81.7 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|390938159|ref|YP_006401897.1| - 8e-05 23.0 0.0 0.00014 22.1 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|390938159|ref|YP_006401897.1| - 0.00016 21.3 0.0 0.00077 19.2 0.0 2.0 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.19 gi|390938159|ref|YP_006401897.1| - 0.0004 19.3 0.4 0.00066 18.6 0.3 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|390938159|ref|YP_006401897.1| - 0.0026 16.8 0.1 0.004 16.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain ThiF PF00899.16 gi|390938159|ref|YP_006401897.1| - 0.0045 16.8 0.1 0.0088 15.8 0.0 1.4 1 0 0 1 1 1 1 ThiF family NAD_binding_8 PF13450.1 gi|390938159|ref|YP_006401897.1| - 0.029 14.3 0.2 0.08 12.9 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DUF2770 PF10968.3 gi|390938159|ref|YP_006401897.1| - 0.033 13.8 1.0 0.081 12.6 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2770) Pantoate_transf PF02548.10 gi|390938160|ref|YP_006401898.1| - 1.1e-108 362.3 0.4 1.2e-108 362.1 0.3 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|390938160|ref|YP_006401898.1| - 1.1e-07 31.3 3.0 0.0015 17.8 0.1 3.0 1 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase Amidohydro_4 PF13147.1 gi|390938160|ref|YP_006401898.1| - 0.019 15.0 0.2 0.024 14.6 0.2 1.3 1 0 0 1 1 1 0 Amidohydrolase ABC2_membrane_3 PF12698.2 gi|390938161|ref|YP_006401899.1| - 1.8e-17 63.4 38.2 2.3e-17 63.0 26.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|390938161|ref|YP_006401899.1| - 2.9e-13 49.2 27.8 4.2e-13 48.7 19.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|390938161|ref|YP_006401899.1| - 2e-05 23.8 16.3 2e-05 23.8 11.3 3.4 2 1 1 3 3 3 2 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|390938161|ref|YP_006401899.1| - 2.9e-05 23.3 42.7 5.8e-05 22.3 29.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|390938162|ref|YP_006401900.1| - 7.5e-28 97.5 0.0 1.6e-27 96.4 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|390938162|ref|YP_006401900.1| - 8.5e-19 68.6 0.1 2.9e-17 63.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|390938162|ref|YP_006401900.1| - 8e-06 25.2 0.3 0.021 14.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|390938162|ref|YP_006401900.1| - 2.8e-05 24.5 0.7 0.00011 22.6 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|390938162|ref|YP_006401900.1| - 0.00023 20.6 0.1 0.0004 19.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|390938162|ref|YP_006401900.1| - 0.0019 18.3 0.1 0.0075 16.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|390938162|ref|YP_006401900.1| - 0.0025 17.5 0.3 0.025 14.3 0.1 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|390938162|ref|YP_006401900.1| - 0.0073 16.3 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|390938162|ref|YP_006401900.1| - 0.0075 17.0 0.3 0.012 16.4 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|390938162|ref|YP_006401900.1| - 0.0075 16.0 0.3 0.018 14.8 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|390938162|ref|YP_006401900.1| - 0.01 15.3 0.1 1.8 7.9 0.1 2.4 1 1 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|390938162|ref|YP_006401900.1| - 0.012 15.0 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|390938162|ref|YP_006401900.1| - 0.014 15.5 0.0 0.029 14.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|390938162|ref|YP_006401900.1| - 0.018 14.0 0.1 1.2 8.0 0.1 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|390938162|ref|YP_006401900.1| - 0.019 14.5 0.0 0.047 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|390938162|ref|YP_006401900.1| - 0.041 14.1 0.0 0.074 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|390938162|ref|YP_006401900.1| - 0.042 13.7 0.2 0.27 11.1 0.2 2.2 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|390938162|ref|YP_006401900.1| - 0.061 12.9 0.1 0.23 11.1 0.0 1.9 2 1 1 3 3 3 0 NACHT domain AAA_13 PF13166.1 gi|390938162|ref|YP_006401900.1| - 0.067 11.6 0.1 0.69 8.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|390938162|ref|YP_006401900.1| - 0.096 12.6 0.0 0.23 11.4 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit UPF0079 PF02367.12 gi|390938162|ref|YP_006401900.1| - 0.11 12.1 0.1 0.2 11.2 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 G-alpha PF00503.15 gi|390938162|ref|YP_006401900.1| - 0.11 11.1 0.0 0.12 11.0 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit AAA_5 PF07728.9 gi|390938162|ref|YP_006401900.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PhosphMutase PF10143.4 gi|390938163|ref|YP_006401901.1| - 1.2e-51 174.7 0.0 2e-51 174.0 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|390938163|ref|YP_006401901.1| - 1.3e-34 119.7 0.0 1.7e-34 119.3 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|390938163|ref|YP_006401901.1| - 0.0021 17.4 0.0 0.0036 16.6 0.0 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF137 PF02006.11 gi|390938165|ref|YP_006401903.1| - 6.4e-82 273.2 3.0 7.8e-82 272.9 2.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 DFP PF04127.10 gi|390938167|ref|YP_006401905.1| - 1.5e-52 177.9 0.0 6.4e-52 175.8 0.0 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|390938167|ref|YP_006401905.1| - 6.4e-27 93.7 0.1 1.1e-26 92.9 0.0 1.4 1 0 0 1 1 1 1 Flavoprotein Acetyltransf_1 PF00583.19 gi|390938168|ref|YP_006401906.1| - 1.4e-15 57.1 0.1 3.5e-15 55.8 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|390938168|ref|YP_006401906.1| - 3e-10 40.2 0.2 3.9e-10 39.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|390938168|ref|YP_006401906.1| - 7.7e-10 38.7 0.4 1.2e-09 38.1 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|390938168|ref|YP_006401906.1| - 6e-09 35.5 0.0 1.1e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|390938168|ref|YP_006401906.1| - 7.5e-08 32.5 0.0 1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|390938168|ref|YP_006401906.1| - 1.3e-07 31.6 0.1 1.9e-07 31.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|390938168|ref|YP_006401906.1| - 1.7e-06 27.9 0.5 3.4e-06 26.9 0.3 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|390938168|ref|YP_006401906.1| - 0.0014 18.8 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain tRNA-synt_2 PF00152.15 gi|390938169|ref|YP_006401907.1| - 9e-84 281.0 0.0 1.3e-83 280.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|390938169|ref|YP_006401907.1| - 2.3e-10 40.1 0.5 3.8e-10 39.4 0.3 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|390938169|ref|YP_006401907.1| - 0.0045 16.2 0.0 0.03 13.5 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) HhH-GPD PF00730.20 gi|390938170|ref|YP_006401908.1| - 1.2e-17 64.1 0.0 1.7e-17 63.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|390938170|ref|YP_006401908.1| - 0.00035 20.6 6.4 0.00089 19.3 4.4 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|390938170|ref|YP_006401908.1| - 0.0071 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Met_10 PF02475.11 gi|390938171|ref|YP_006401909.1| - 2.1e-56 190.6 0.0 2.9e-56 190.2 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|390938171|ref|YP_006401909.1| - 2e-07 30.7 0.0 2.9e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.11 gi|390938171|ref|YP_006401909.1| - 6.1e-07 28.6 0.0 8.6e-07 28.2 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|390938171|ref|YP_006401909.1| - 8e-06 25.8 0.0 1.3e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|390938171|ref|YP_006401909.1| - 4.6e-05 22.6 0.0 7.1e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|390938171|ref|YP_006401909.1| - 0.00042 20.8 0.0 0.00072 20.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|390938171|ref|YP_006401909.1| - 0.00048 19.5 0.0 0.00064 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_16 PF10294.4 gi|390938171|ref|YP_006401909.1| - 0.00056 19.3 0.0 0.00086 18.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_31 PF13847.1 gi|390938171|ref|YP_006401909.1| - 0.0061 16.1 0.0 0.0098 15.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|390938171|ref|YP_006401909.1| - 0.076 12.4 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Transglut_core PF01841.14 gi|390938172|ref|YP_006401910.1| - 2.1e-09 37.5 0.0 3.6e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily PhoH PF02562.11 gi|390938173|ref|YP_006401911.1| - 3.1e-43 147.4 0.0 4.1e-43 147.0 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_5 PF13184.1 gi|390938173|ref|YP_006401911.1| - 3.8e-08 33.0 0.1 8.1e-07 28.7 0.0 2.6 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|390938173|ref|YP_006401911.1| - 1.3e-05 24.7 2.4 0.00034 20.1 0.3 2.8 2 0 0 2 2 2 1 KH domain KH_2 PF07650.12 gi|390938173|ref|YP_006401911.1| - 0.00012 21.5 2.5 0.00077 18.9 0.2 2.5 1 1 1 2 2 2 1 KH domain KH_3 PF13014.1 gi|390938173|ref|YP_006401911.1| - 0.00033 20.2 2.6 0.0032 17.0 1.0 2.6 2 0 0 2 2 2 1 KH domain ABC_tran PF00005.22 gi|390938173|ref|YP_006401911.1| - 0.0083 16.4 0.1 0.099 12.9 0.0 2.2 2 0 0 2 2 2 1 ABC transporter AAA_22 PF13401.1 gi|390938173|ref|YP_006401911.1| - 0.019 15.0 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|390938173|ref|YP_006401911.1| - 0.022 14.2 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|390938173|ref|YP_006401911.1| - 0.078 12.5 0.0 1.8 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|390938173|ref|YP_006401911.1| - 0.13 12.1 0.2 2.6 7.9 0.1 2.3 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|390938173|ref|YP_006401911.1| - 0.14 11.5 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein TrmB PF01978.14 gi|390938175|ref|YP_006401913.1| - 9.8e-06 25.1 0.1 1.9e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|390938175|ref|YP_006401913.1| - 8.5e-05 22.6 0.1 0.00016 21.6 0.1 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.5 gi|390938175|ref|YP_006401913.1| - 0.00033 20.1 0.0 0.00058 19.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|390938175|ref|YP_006401913.1| - 0.00047 19.7 0.5 0.0017 18.0 0.2 2.0 1 1 2 3 3 3 1 MarR family MarR_2 PF12802.2 gi|390938175|ref|YP_006401913.1| - 0.00063 19.3 0.1 0.0011 18.5 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|390938175|ref|YP_006401913.1| - 0.0018 18.5 0.1 0.0031 17.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|390938175|ref|YP_006401913.1| - 0.023 14.6 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|390938175|ref|YP_006401913.1| - 0.04 13.5 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|390938175|ref|YP_006401913.1| - 0.048 13.1 0.1 0.097 12.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Cdc6_C PF09079.6 gi|390938175|ref|YP_006401913.1| - 0.053 13.2 0.3 0.24 11.1 0.1 2.1 2 0 0 2 2 2 0 CDC6, C terminal Rrf2 PF02082.15 gi|390938175|ref|YP_006401913.1| - 0.066 13.3 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.2 gi|390938175|ref|YP_006401913.1| - 0.098 12.4 0.1 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Phlebovirus_NSM PF07246.6 gi|390938176|ref|YP_006401914.1| - 0.0056 15.8 0.2 0.0063 15.7 0.1 1.1 1 0 0 1 1 1 1 Phlebovirus nonstructural protein NS-M BLOC1_2 PF10046.4 gi|390938176|ref|YP_006401914.1| - 0.013 15.6 0.2 0.3 11.2 0.1 2.1 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.4 gi|390938176|ref|YP_006401914.1| - 0.033 13.1 0.4 0.04 12.8 0.3 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Peptidase_M3 PF01432.15 gi|390938176|ref|YP_006401914.1| - 0.047 12.7 0.2 0.11 11.4 0.1 1.5 1 1 1 2 2 2 0 Peptidase family M3 CARD PF00619.16 gi|390938176|ref|YP_006401914.1| - 0.05 13.4 0.9 0.25 11.2 0.4 2.1 1 1 1 2 2 2 0 Caspase recruitment domain DLIC PF05783.6 gi|390938176|ref|YP_006401914.1| - 0.074 11.7 0.2 0.13 10.9 0.0 1.4 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) RasGAP PF00616.14 gi|390938176|ref|YP_006401914.1| - 0.076 12.6 0.1 0.089 12.4 0.1 1.2 1 0 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase IFT20 PF14931.1 gi|390938176|ref|YP_006401914.1| - 0.078 12.8 0.2 1.3 8.9 0.1 2.0 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 STAT_alpha PF01017.15 gi|390938176|ref|YP_006401914.1| - 0.091 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 STAT protein, all-alpha domain AF0941-like PF14591.1 gi|390938176|ref|YP_006401914.1| - 0.096 12.7 0.6 0.24 11.4 0.4 1.9 1 1 0 1 1 1 0 AF0941-like FerA PF08165.6 gi|390938176|ref|YP_006401914.1| - 0.13 11.9 0.7 2.9 7.6 0.1 2.5 1 1 1 2 2 2 0 FerA (NUC095) domain DevR PF01905.11 gi|390938177|ref|YP_006401915.1| - 7.5e-54 182.3 0.0 9.7e-54 182.0 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 SLA_LP_auto_ag PF05889.8 gi|390938177|ref|YP_006401915.1| - 0.054 11.9 0.0 0.11 11.0 0.0 1.4 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Cas_Cas5d PF09704.5 gi|390938178|ref|YP_006401916.1| - 1.6e-11 44.2 0.0 1.1e-10 41.5 0.0 2.0 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.24 gi|390938179|ref|YP_006401917.1| - 1.9e-11 43.7 0.0 1.1e-10 41.2 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|390938179|ref|YP_006401917.1| - 2.9e-06 27.2 0.0 1.2e-05 25.2 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|390938179|ref|YP_006401917.1| - 3.9e-06 26.6 0.4 2.3e-05 24.1 0.3 2.3 1 1 0 1 1 1 1 Helicase conserved C-terminal domain AAA_19 PF13245.1 gi|390938179|ref|YP_006401917.1| - 5.7e-05 22.7 0.0 0.00024 20.8 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|390938179|ref|YP_006401917.1| - 0.014 15.0 0.0 0.078 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain Flavi_DEAD PF07652.9 gi|390938179|ref|YP_006401917.1| - 0.05 13.3 0.5 1.3 8.7 0.0 3.1 3 1 1 4 4 4 0 Flavivirus DEAD domain AAA_11 PF13086.1 gi|390938179|ref|YP_006401917.1| - 0.14 11.7 0.0 0.36 10.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain HD PF01966.17 gi|390938180|ref|YP_006401918.1| - 4.7e-06 26.6 0.1 9.1e-06 25.6 0.1 1.6 1 0 0 1 1 1 1 HD domain Cas_Csa4 PF09703.5 gi|390938181|ref|YP_006401919.1| - 3.6e-37 128.1 0.3 5e-37 127.7 0.2 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa4) YvbH_ext PF11724.3 gi|390938181|ref|YP_006401919.1| - 0.13 11.9 0.4 0.32 10.6 0.3 1.6 1 0 0 1 1 1 0 YvbH-like oligomerisation region Nexin_C PF08628.7 gi|390938183|ref|YP_006401921.1| - 0.014 15.4 0.1 0.017 15.1 0.0 1.3 1 1 0 1 1 1 0 Sorting nexin C terminal DUF2223 PF09985.4 gi|390938183|ref|YP_006401921.1| - 0.043 13.1 0.0 0.052 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2223) DUF1104 PF06518.6 gi|390938183|ref|YP_006401921.1| - 0.056 13.5 0.8 0.073 13.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1104) Complex1_LYR PF05347.10 gi|390938183|ref|YP_006401921.1| - 0.097 12.4 0.4 0.94 9.3 0.2 2.0 2 0 0 2 2 2 0 Complex 1 protein (LYR family) PIN PF01850.16 gi|390938184|ref|YP_006401922.1| - 1.8e-11 44.4 1.4 2.4e-11 44.0 1.0 1.2 1 0 0 1 1 1 1 PIN domain ATP_bind_3 PF01171.15 gi|390938185|ref|YP_006401923.1| - 5.6e-16 58.5 0.0 5.1e-15 55.4 0.0 2.3 2 1 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.11 gi|390938185|ref|YP_006401923.1| - 0.0062 15.1 0.0 0.009 14.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase YL1_C PF08265.6 gi|390938185|ref|YP_006401923.1| - 0.011 15.2 0.4 0.024 14.1 0.2 1.6 1 0 0 1 1 1 0 YL1 nuclear protein C-terminal domain NAD_synthase PF02540.12 gi|390938185|ref|YP_006401923.1| - 0.013 14.4 0.0 0.13 11.1 0.0 2.1 2 0 0 2 2 2 0 NAD synthase PAPS_reduct PF01507.14 gi|390938185|ref|YP_006401923.1| - 0.023 14.5 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Metallophos_2 PF12850.2 gi|390938186|ref|YP_006401924.1| - 3.3e-14 52.9 0.0 5e-14 52.4 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|390938186|ref|YP_006401924.1| - 5.5e-13 48.6 0.1 9.7e-09 34.7 0.0 2.2 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|390938186|ref|YP_006401924.1| - 3e-11 43.0 0.1 5.1e-11 42.3 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase CLIP PF12032.3 gi|390938187|ref|YP_006401925.1| - 0.11 12.5 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Regulatory CLIP domain of proteinases ABC2_membrane_2 PF12679.2 gi|390938188|ref|YP_006401926.1| - 9.6e-19 67.2 0.8 1.9e-18 66.2 0.6 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|390938188|ref|YP_006401926.1| - 0.00017 20.8 38.8 0.00078 18.6 26.9 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|390938188|ref|YP_006401926.1| - 0.0024 17.1 19.5 0.0024 17.1 13.5 2.2 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|390938189|ref|YP_006401927.1| - 8.3e-22 77.9 0.0 1.5e-21 77.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938189|ref|YP_006401927.1| - 7.5e-12 45.8 0.2 3.8e-08 33.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain ArgK PF03308.11 gi|390938189|ref|YP_006401927.1| - 0.026 13.3 0.1 0.043 12.5 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_23 PF13476.1 gi|390938189|ref|YP_006401927.1| - 0.1 12.9 0.9 0.16 12.2 0.6 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|390938189|ref|YP_006401927.1| - 0.11 12.2 0.2 0.23 11.1 0.2 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B N6_N4_Mtase PF01555.13 gi|390938190|ref|YP_006401928.1| - 1.8e-30 106.1 0.1 1.1e-15 57.7 0.0 2.1 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|390938190|ref|YP_006401928.1| - 1.7e-14 53.8 0.0 2.6e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|390938190|ref|YP_006401928.1| - 3.1e-10 39.9 0.0 1.2e-09 37.9 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|390938190|ref|YP_006401928.1| - 3.3e-06 27.4 0.0 0.0005 20.5 0.0 3.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|390938190|ref|YP_006401928.1| - 0.00034 20.3 0.0 0.0012 18.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|390938190|ref|YP_006401928.1| - 0.00056 19.5 0.0 0.79 9.2 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|390938190|ref|YP_006401928.1| - 0.0039 17.7 0.0 0.0086 16.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|390938190|ref|YP_006401928.1| - 0.027 14.0 0.0 0.072 12.6 0.0 1.7 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Carb_kinase PF01256.12 gi|390938191|ref|YP_006401929.1| - 9.9e-47 159.2 0.5 1.4e-43 148.9 0.0 2.1 2 0 0 2 2 2 2 Carbohydrate kinase YjeF_N PF03853.10 gi|390938191|ref|YP_006401929.1| - 3.7e-41 140.5 0.1 7e-41 139.6 0.0 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus TPP_enzyme_M PF00205.17 gi|390938191|ref|YP_006401929.1| - 0.072 12.8 0.0 0.68 9.6 0.0 2.4 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain AIM24 PF01987.12 gi|390938192|ref|YP_006401930.1| - 6.3e-57 192.4 0.1 7e-57 192.3 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 SOR_SNZ PF01680.12 gi|390938193|ref|YP_006401931.1| - 1.5e-85 286.0 0.3 2.1e-85 285.5 0.2 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|390938193|ref|YP_006401931.1| - 4.6e-07 29.1 2.2 2e-05 23.8 0.0 2.4 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|390938193|ref|YP_006401931.1| - 0.0007 18.6 0.1 0.44 9.4 0.0 2.4 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.12 gi|390938193|ref|YP_006401931.1| - 0.00091 18.1 0.2 0.29 9.9 0.0 2.6 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|390938193|ref|YP_006401931.1| - 0.0015 17.7 1.8 0.0054 15.9 0.1 2.2 2 1 1 3 3 3 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|390938193|ref|YP_006401931.1| - 0.0016 17.7 0.2 0.8 8.9 0.0 3.0 2 1 1 3 3 3 2 Histidine biosynthesis protein IGPS PF00218.16 gi|390938193|ref|YP_006401931.1| - 0.017 14.1 0.0 0.11 11.4 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|390938193|ref|YP_006401931.1| - 0.058 11.9 0.0 0.15 10.5 0.0 1.6 2 0 0 2 2 2 0 Tryptophan synthase alpha chain OMPdecase PF00215.19 gi|390938193|ref|YP_006401931.1| - 0.073 12.4 0.0 1.3 8.3 0.0 2.2 1 1 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2464 PF10240.4 gi|390938193|ref|YP_006401931.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2464) FMN_dh PF01070.13 gi|390938193|ref|YP_006401931.1| - 6.5 5.4 6.1 0.8 8.4 0.2 2.2 3 0 0 3 3 3 0 FMN-dependent dehydrogenase SNO PF01174.14 gi|390938194|ref|YP_006401932.1| - 3.1e-48 163.9 0.0 3.5e-48 163.7 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|390938194|ref|YP_006401932.1| - 1.9e-09 37.2 0.0 2.7e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|390938194|ref|YP_006401932.1| - 2e-08 33.9 0.0 3.8e-08 32.9 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|390938194|ref|YP_006401932.1| - 1.3e-05 24.9 0.0 1.8e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|390938194|ref|YP_006401932.1| - 3.4e-05 23.3 0.0 4.8e-05 22.8 0.0 1.3 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|390938194|ref|YP_006401932.1| - 0.00021 20.6 0.0 0.00029 20.1 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|390938194|ref|YP_006401932.1| - 0.033 13.6 0.2 0.16 11.3 0.1 2.3 1 1 0 1 1 1 0 Peptidase C26 PALP PF00291.20 gi|390938195|ref|YP_006401933.1| - 2.8e-17 62.9 1.3 3.4e-15 56.0 0.9 2.9 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TrmB PF01978.14 gi|390938195|ref|YP_006401933.1| - 0.0021 17.7 0.3 0.0055 16.3 0.2 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|390938195|ref|YP_006401933.1| - 0.0034 17.0 0.2 0.016 14.8 0.0 2.2 2 0 0 2 2 2 1 HTH domain PadR PF03551.9 gi|390938195|ref|YP_006401933.1| - 0.0037 17.0 0.1 0.0078 15.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family AdoHcyase_NAD PF00670.16 gi|390938195|ref|YP_006401933.1| - 0.047 13.5 0.1 0.082 12.7 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GMP_synt_C PF00958.17 gi|390938196|ref|YP_006401934.1| - 1e-31 108.5 0.1 2.3e-31 107.3 0.1 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain GATase PF00117.23 gi|390938196|ref|YP_006401934.1| - 2.7e-31 108.5 0.0 5.1e-31 107.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I NAD_synthase PF02540.12 gi|390938196|ref|YP_006401934.1| - 7.3e-12 44.7 0.1 2.3e-05 23.4 0.0 2.5 3 0 0 3 3 3 2 NAD synthase Peptidase_C26 PF07722.8 gi|390938196|ref|YP_006401934.1| - 7.7e-11 41.8 0.0 2e-10 40.5 0.0 1.8 1 0 0 1 1 1 1 Peptidase C26 ATP_bind_3 PF01171.15 gi|390938196|ref|YP_006401934.1| - 0.00029 20.3 0.0 0.00057 19.4 0.0 1.4 1 0 0 1 1 1 1 PP-loop family DJ-1_PfpI PF01965.19 gi|390938196|ref|YP_006401934.1| - 0.0039 16.6 0.0 0.008 15.6 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family QueC PF06508.8 gi|390938196|ref|YP_006401934.1| - 0.0052 16.0 0.0 0.053 12.7 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC GATase_3 PF07685.9 gi|390938196|ref|YP_006401934.1| - 0.022 14.3 0.1 0.052 13.1 0.0 1.6 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Pribosyltran PF00156.22 gi|390938197|ref|YP_006401935.1| - 4e-22 78.2 0.5 8.2e-22 77.2 0.1 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|390938197|ref|YP_006401935.1| - 0.0037 16.5 0.0 0.005 16.0 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase OMPdecase PF00215.19 gi|390938198|ref|YP_006401936.1| - 6.4e-28 97.6 0.0 8.3e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family ThiC PF01964.13 gi|390938198|ref|YP_006401936.1| - 0.08 11.4 0.1 0.11 11.0 0.0 1.1 1 0 0 1 1 1 0 ThiC family Pribosyltran PF00156.22 gi|390938199|ref|YP_006401937.1| - 4.3e-16 58.7 1.3 8.3e-16 57.8 0.9 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|390938199|ref|YP_006401937.1| - 0.015 14.4 0.1 0.022 13.9 0.1 1.3 1 1 0 1 1 1 0 Uracil phosphoribosyltransferase DHODB_Fe-S_bind PF10418.4 gi|390938200|ref|YP_006401938.1| - 1.3e-09 37.4 3.1 1.3e-09 37.4 2.2 2.5 3 0 0 3 3 3 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|390938200|ref|YP_006401938.1| - 5e-07 30.2 0.0 7.1e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.7 gi|390938200|ref|YP_006401938.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 Ferric reductase NAD binding domain DHO_dh PF01180.16 gi|390938201|ref|YP_006401939.1| - 2.6e-54 184.1 0.0 3e-54 184.0 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|390938201|ref|YP_006401939.1| - 2.1e-08 33.3 0.2 4.7e-08 32.2 0.0 1.5 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|390938201|ref|YP_006401939.1| - 0.00025 20.3 0.5 0.0021 17.3 0.0 2.5 4 0 0 4 4 4 1 Histidine biosynthesis protein NMO PF03060.10 gi|390938201|ref|YP_006401939.1| - 0.0029 16.7 2.5 0.0063 15.7 0.5 1.9 1 1 1 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.20 gi|390938201|ref|YP_006401939.1| - 0.026 13.4 0.0 0.052 12.4 0.0 1.5 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|390938201|ref|YP_006401939.1| - 0.03 13.1 0.3 0.11 11.3 0.1 2.0 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DHDPS PF00701.17 gi|390938201|ref|YP_006401939.1| - 0.094 11.2 0.2 3.2 6.2 0.1 2.3 2 0 0 2 2 2 0 Dihydrodipicolinate synthetase family MarR PF01047.17 gi|390938202|ref|YP_006401940.1| - 0.00026 20.6 0.1 0.00073 19.1 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|390938202|ref|YP_006401940.1| - 0.001 18.8 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|390938202|ref|YP_006401940.1| - 0.0014 18.2 0.4 0.0092 15.6 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|390938202|ref|YP_006401940.1| - 0.0047 16.5 0.4 0.018 14.6 0.3 2.0 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|390938202|ref|YP_006401940.1| - 0.009 15.6 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HxlR PF01638.12 gi|390938202|ref|YP_006401940.1| - 0.0093 15.5 0.2 0.026 14.1 0.1 1.7 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|390938202|ref|YP_006401940.1| - 0.011 15.3 0.4 0.031 13.9 0.2 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_CodY PF08222.6 gi|390938202|ref|YP_006401940.1| - 0.013 14.8 0.1 0.097 12.0 0.0 2.3 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_27 PF13463.1 gi|390938202|ref|YP_006401940.1| - 0.018 15.3 0.1 0.046 14.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain VIT1 PF01988.14 gi|390938202|ref|YP_006401940.1| - 0.031 13.7 3.4 0.018 14.5 1.1 1.5 2 0 0 2 2 2 0 VIT family HTH_24 PF13412.1 gi|390938202|ref|YP_006401940.1| - 0.037 13.4 1.6 0.076 12.4 0.2 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|390938202|ref|YP_006401940.1| - 0.069 12.9 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2207 PF09972.4 gi|390938202|ref|YP_006401940.1| - 0.12 10.9 2.0 0.15 10.5 1.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Arch_flagellin PF01917.11 gi|390938205|ref|YP_006401943.1| - 2.5e-27 95.7 2.2 3e-27 95.4 1.5 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF1700 PF08006.6 gi|390938206|ref|YP_006401944.1| - 0.05 12.8 5.6 0.056 12.7 3.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF3270 PF11674.3 gi|390938206|ref|YP_006401944.1| - 0.77 9.8 4.3 1.1 9.3 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3270) DUF3096 PF11295.3 gi|390938206|ref|YP_006401944.1| - 3.1 7.3 7.1 5.9 6.4 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3096) Arch_flagellin PF01917.11 gi|390938208|ref|YP_006401946.1| - 4.6e-05 23.1 10.7 0.00024 20.7 7.4 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin DUF1628 PF07790.6 gi|390938208|ref|YP_006401946.1| - 2.4 8.9 8.6 13 6.5 6.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) TadE PF07811.7 gi|390938209|ref|YP_006401947.1| - 0.0056 16.5 1.3 0.011 15.5 0.9 1.5 1 0 0 1 1 1 1 TadE-like protein Arch_flagellin PF01917.11 gi|390938209|ref|YP_006401947.1| - 0.019 14.5 6.4 0.041 13.4 4.5 1.5 1 1 0 1 1 1 0 Archaebacterial flagellin KaiC PF06745.8 gi|390938210|ref|YP_006401948.1| - 2.3e-24 85.8 0.5 2.7e-24 85.5 0.3 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|390938210|ref|YP_006401948.1| - 3.7e-07 29.7 0.0 5.8e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|390938210|ref|YP_006401948.1| - 0.00019 20.4 0.5 0.001 17.9 0.3 1.8 2 0 0 2 2 2 1 PAXNEB protein NACHT PF05729.7 gi|390938210|ref|YP_006401948.1| - 0.00048 19.8 0.1 0.00071 19.2 0.1 1.6 1 1 0 1 1 1 1 NACHT domain AAA_19 PF13245.1 gi|390938210|ref|YP_006401948.1| - 0.00081 19.0 0.2 0.0015 18.2 0.1 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|390938210|ref|YP_006401948.1| - 0.001 19.2 0.1 0.0024 18.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|390938210|ref|YP_006401948.1| - 0.002 17.6 0.3 0.0042 16.5 0.1 1.4 1 1 0 1 1 1 1 AAA-like domain RecA PF00154.16 gi|390938210|ref|YP_006401948.1| - 0.002 17.2 0.2 0.0043 16.1 0.1 1.6 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_30 PF13604.1 gi|390938210|ref|YP_006401948.1| - 0.003 17.1 0.1 0.0042 16.6 0.0 1.3 1 1 0 1 1 1 1 AAA domain DAP3 PF10236.4 gi|390938210|ref|YP_006401948.1| - 0.0046 15.9 0.6 0.0069 15.3 0.1 1.4 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 AAA_16 PF13191.1 gi|390938210|ref|YP_006401948.1| - 0.0089 16.0 0.0 0.011 15.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.10 gi|390938210|ref|YP_006401948.1| - 0.011 15.4 2.8 0.043 13.5 1.1 2.3 1 1 1 2 2 2 0 NTPase DUF2075 PF09848.4 gi|390938210|ref|YP_006401948.1| - 0.014 14.4 0.3 0.024 13.6 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MobB PF03205.9 gi|390938210|ref|YP_006401948.1| - 0.015 15.0 1.4 0.033 13.8 0.5 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|390938210|ref|YP_006401948.1| - 0.016 14.6 0.5 0.029 13.8 0.4 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|390938210|ref|YP_006401948.1| - 0.017 14.9 0.3 0.21 11.4 0.2 2.3 1 1 1 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|390938210|ref|YP_006401948.1| - 0.025 14.1 0.2 0.067 12.8 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|390938210|ref|YP_006401948.1| - 0.028 14.0 0.3 2.7 7.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein TrwB_AAD_bind PF10412.4 gi|390938210|ref|YP_006401948.1| - 0.03 12.9 0.2 0.047 12.2 0.2 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Rad51 PF08423.6 gi|390938210|ref|YP_006401948.1| - 0.033 13.0 0.5 0.063 12.1 0.1 1.6 2 0 0 2 2 2 0 Rad51 Miro PF08477.8 gi|390938210|ref|YP_006401948.1| - 0.036 14.5 0.2 0.058 13.8 0.1 1.5 1 1 0 1 1 1 0 Miro-like protein IstB_IS21 PF01695.12 gi|390938210|ref|YP_006401948.1| - 0.04 13.3 0.8 0.11 11.9 0.1 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF815 PF05673.8 gi|390938210|ref|YP_006401948.1| - 0.057 12.3 0.2 0.23 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|390938210|ref|YP_006401948.1| - 0.1 12.9 0.1 0.21 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|390938210|ref|YP_006401948.1| - 0.11 12.1 0.1 0.13 11.8 0.1 1.3 1 1 0 1 1 1 0 Archaeal ATPase PhoH PF02562.11 gi|390938210|ref|YP_006401948.1| - 0.18 11.0 0.9 4.5 6.4 0.1 2.5 2 1 1 3 3 3 0 PhoH-like protein T2SF PF00482.18 gi|390938211|ref|YP_006401949.1| - 7.4e-15 54.9 5.8 6.6e-09 35.7 0.0 3.6 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Nitroreductase PF00881.19 gi|390938212|ref|YP_006401950.1| - 1.1e-25 90.4 0.0 1.2e-25 90.2 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family Phage_holin_2 PF04550.7 gi|390938213|ref|YP_006401951.1| - 0.029 14.4 2.0 0.032 14.3 0.4 1.7 2 0 0 2 2 2 0 Phage holin family 2 DUF3149 PF11346.3 gi|390938213|ref|YP_006401951.1| - 0.055 13.0 0.3 0.11 12.0 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) PsbW PF07123.7 gi|390938214|ref|YP_006401952.1| - 0.093 12.7 0.7 0.19 11.8 0.5 1.4 1 0 0 1 1 1 0 Photosystem II reaction centre W protein (PsbW) DUF4328 PF14219.1 gi|390938214|ref|YP_006401952.1| - 0.42 9.8 4.9 0.44 9.8 3.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4328) MerC PF03203.9 gi|390938214|ref|YP_006401952.1| - 0.89 9.9 3.8 3.1 8.1 0.8 2.0 1 1 1 2 2 2 0 MerC mercury resistance protein DUF3624 PF12292.3 gi|390938214|ref|YP_006401952.1| - 1.4 9.3 6.8 0.94 9.9 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3624) DUF1282 PF06930.7 gi|390938214|ref|YP_006401952.1| - 5.1 6.7 10.2 10 5.7 7.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) TPP_enzyme_C PF02775.16 gi|390938215|ref|YP_006401953.1| - 4.3e-30 104.3 0.1 7e-30 103.6 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|390938215|ref|YP_006401953.1| - 2.8e-11 43.1 0.1 1.1e-10 41.2 0.0 1.9 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|390938216|ref|YP_006401954.1| - 9.9e-60 201.8 0.0 1.4e-59 201.3 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|390938216|ref|YP_006401954.1| - 9.3e-29 100.5 0.0 2.1e-28 99.3 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|390938216|ref|YP_006401954.1| - 7.1e-06 25.9 0.0 1.8e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|390938216|ref|YP_006401954.1| - 0.0016 17.9 0.0 0.0036 16.7 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain zf-met PF12874.2 gi|390938217|ref|YP_006401955.1| - 0.0013 18.8 0.1 0.0028 17.8 0.1 1.5 1 0 0 1 1 1 1 Zinc-finger of C2H2 type HIPIP PF01355.12 gi|390938217|ref|YP_006401955.1| - 0.013 15.5 1.1 0.036 14.1 0.1 2.1 2 1 1 3 3 3 0 High potential iron-sulfur protein zf-C2H2_jaz PF12171.3 gi|390938217|ref|YP_006401955.1| - 0.042 13.9 0.3 0.088 12.9 0.2 1.5 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-C2H2 PF00096.21 gi|390938217|ref|YP_006401955.1| - 0.063 13.6 0.3 0.063 13.6 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_2 PF12756.2 gi|390938217|ref|YP_006401955.1| - 0.071 13.2 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) Fer4_15 PF13459.1 gi|390938218|ref|YP_006401956.1| - 5.8e-15 55.6 1.7 7.1e-15 55.3 1.2 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|390938218|ref|YP_006401956.1| - 1.5e-13 50.9 1.1 1.9e-13 50.5 0.8 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|390938218|ref|YP_006401956.1| - 0.00027 20.4 3.1 0.11 12.1 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|390938218|ref|YP_006401956.1| - 0.0021 18.2 0.4 0.0032 17.6 0.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|390938218|ref|YP_006401956.1| - 0.018 14.9 0.5 0.018 14.9 0.3 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|390938218|ref|YP_006401956.1| - 0.027 14.3 3.5 0.24 11.2 2.4 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|390938218|ref|YP_006401956.1| - 0.035 14.4 2.0 0.9 9.9 1.9 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|390938218|ref|YP_006401956.1| - 0.041 13.7 5.1 0.24 11.3 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|390938218|ref|YP_006401956.1| - 0.12 12.2 2.0 0.52 10.1 1.6 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain YHS PF04945.8 gi|390938219|ref|YP_006401957.1| - 1.8e-20 72.5 3.6 1.9e-20 72.4 2.5 1.0 1 0 0 1 1 1 1 YHS domain Ribosomal_L24e PF01246.15 gi|390938219|ref|YP_006401957.1| - 2.4e-07 30.5 0.9 2.9e-07 30.2 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|390938219|ref|YP_006401957.1| - 0.0007 19.1 2.3 0.00092 18.8 1.6 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|390938219|ref|YP_006401957.1| - 0.011 15.9 4.7 0.015 15.4 3.3 1.4 1 1 0 1 1 1 0 Archaeal TRASH domain DUF2116 PF09889.4 gi|390938219|ref|YP_006401957.1| - 0.11 12.2 1.0 0.29 10.9 0.3 1.8 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF3508 PF12018.3 gi|390938219|ref|YP_006401957.1| - 0.18 10.7 0.3 0.22 10.4 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3508) E1-E2_ATPase PF00122.15 gi|390938220|ref|YP_006401958.1| - 6.8e-50 169.2 0.5 1.2e-49 168.3 0.4 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|390938220|ref|YP_006401958.1| - 9.7e-41 140.5 0.0 1.8e-40 139.6 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|390938220|ref|YP_006401958.1| - 1.5e-13 51.3 0.0 4.3e-13 49.8 0.0 1.9 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|390938220|ref|YP_006401958.1| - 3.7e-12 46.1 4.9 1.3e-10 41.2 0.1 3.5 3 0 0 3 3 3 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|390938220|ref|YP_006401958.1| - 6.8e-06 25.8 0.0 0.0061 16.1 0.0 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase TusA PF01206.12 gi|390938220|ref|YP_006401958.1| - 0.0048 16.4 0.0 0.035 13.7 0.0 2.4 3 0 0 3 3 3 1 Sulfurtransferase TusA DAO PF01266.19 gi|390938222|ref|YP_006401960.1| - 5e-14 51.9 0.1 3.1e-06 26.3 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|390938222|ref|YP_006401960.1| - 5.3e-13 49.2 0.0 0.00025 20.9 0.0 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|390938222|ref|YP_006401960.1| - 6.6e-12 44.6 0.0 2.4e-06 26.3 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|390938222|ref|YP_006401960.1| - 3e-08 32.9 0.3 0.0016 17.3 0.0 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|390938222|ref|YP_006401960.1| - 9.4e-07 29.0 0.0 0.049 13.6 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|390938222|ref|YP_006401960.1| - 2e-06 26.9 0.0 8.1e-05 21.6 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|390938222|ref|YP_006401960.1| - 8.8e-06 25.6 0.1 3e-05 23.9 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|390938222|ref|YP_006401960.1| - 2.7e-05 23.2 0.0 4.6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|390938222|ref|YP_006401960.1| - 7.2e-05 21.9 0.1 0.00068 18.7 0.0 2.2 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.1 gi|390938222|ref|YP_006401960.1| - 0.00026 20.7 0.0 0.032 14.0 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|390938222|ref|YP_006401960.1| - 0.0003 21.1 0.1 0.53 10.7 0.0 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|390938222|ref|YP_006401960.1| - 0.00033 19.8 0.0 0.00063 18.8 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|390938222|ref|YP_006401960.1| - 0.0046 16.0 0.0 0.028 13.5 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|390938222|ref|YP_006401960.1| - 0.0056 15.3 0.0 0.0082 14.8 0.0 1.2 1 0 0 1 1 1 1 Tryptophan halogenase Adenylsucc_synt PF00709.16 gi|390938223|ref|YP_006401961.1| - 2.7e-72 243.7 0.2 2.8e-35 121.7 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase SAICAR_synt PF01259.13 gi|390938224|ref|YP_006401962.1| - 2.4e-50 170.9 0.0 2.7e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.9 gi|390938225|ref|YP_006401963.1| - 2.9e-19 68.7 0.1 3.2e-19 68.6 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.1 gi|390938226|ref|YP_006401964.1| - 1.1e-46 158.9 0.0 1.7e-46 158.2 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|390938226|ref|YP_006401964.1| - 6.7e-10 38.7 0.0 8.5e-10 38.3 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|390938226|ref|YP_006401964.1| - 6.6e-08 32.1 0.0 9.1e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|390938226|ref|YP_006401964.1| - 2.8e-07 30.2 0.0 2.4e-06 27.2 0.0 2.0 1 1 1 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|390938226|ref|YP_006401964.1| - 0.0007 18.9 0.0 0.00099 18.4 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|390938226|ref|YP_006401964.1| - 0.0044 16.4 0.0 0.0065 15.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|390938226|ref|YP_006401964.1| - 0.0059 16.2 0.0 0.012 15.2 0.0 1.4 2 0 0 2 2 2 1 SNO glutamine amidotransferase family AIRS_C PF02769.17 gi|390938227|ref|YP_006401965.1| - 4.9e-43 146.7 0.1 1e-20 74.3 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|390938227|ref|YP_006401965.1| - 9.6e-38 128.3 0.1 2.3e-22 79.0 0.0 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain Tegument_dsDNA PF12818.2 gi|390938227|ref|YP_006401965.1| - 2.9e-05 23.0 0.0 0.12 11.2 0.0 2.3 2 0 0 2 2 2 2 dsDNA viral tegument protein GATase_6 PF13522.1 gi|390938228|ref|YP_006401966.1| - 3.3e-14 52.9 0.0 5.5e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|390938228|ref|YP_006401966.1| - 2.5e-13 49.8 0.0 3.8e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|390938228|ref|YP_006401966.1| - 4e-11 42.7 0.1 8e-11 41.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.16 gi|390938228|ref|YP_006401966.1| - 2e-09 36.6 0.1 0.0031 16.2 0.0 3.1 2 1 0 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|390938228|ref|YP_006401966.1| - 0.024 13.3 0.0 0.063 11.9 0.0 1.6 1 1 0 1 1 1 0 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|390938229|ref|YP_006401967.1| - 2.1e-18 66.2 0.5 4.7e-18 65.0 0.3 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|390938229|ref|YP_006401967.1| - 0.0002 20.7 0.0 0.00038 19.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase GARS_A PF01071.14 gi|390938230|ref|YP_006401968.1| - 2.5e-37 128.3 0.0 3.6e-37 127.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|390938230|ref|YP_006401968.1| - 1e-23 83.7 0.0 1.8e-23 82.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|390938230|ref|YP_006401968.1| - 5.5e-11 42.4 0.0 1.3e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|390938230|ref|YP_006401968.1| - 8.6e-08 32.1 0.0 2.3e-07 30.7 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|390938230|ref|YP_006401968.1| - 0.00047 18.9 0.0 0.00065 18.5 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.1 gi|390938230|ref|YP_006401968.1| - 0.01 14.9 0.0 0.015 14.4 0.0 1.1 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.9 gi|390938230|ref|YP_006401968.1| - 0.024 14.4 0.0 0.076 12.8 0.0 1.8 1 1 0 1 1 1 0 ATP-grasp domain GSH-S_ATP PF02955.11 gi|390938230|ref|YP_006401968.1| - 0.032 13.3 0.0 0.062 12.4 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.12 gi|390938230|ref|YP_006401968.1| - 0.14 11.4 0.0 0.24 10.6 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|390938231|ref|YP_006401969.1| - 4.6e-39 133.5 0.0 7.1e-39 132.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|390938231|ref|YP_006401969.1| - 1e-22 80.7 0.1 2.7e-22 79.3 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|390938231|ref|YP_006401969.1| - 2.5e-10 40.0 0.0 4.2e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|390938231|ref|YP_006401969.1| - 5.6e-08 32.3 0.1 1.6e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|390938231|ref|YP_006401969.1| - 1.9e-05 24.2 0.0 7.2e-05 22.3 0.0 1.9 1 1 0 1 1 1 1 RimK-like ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|390938231|ref|YP_006401969.1| - 0.0018 17.4 0.0 0.0038 16.4 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GARS_A PF01071.14 gi|390938231|ref|YP_006401969.1| - 0.002 17.7 0.0 0.0041 16.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.9 gi|390938231|ref|YP_006401969.1| - 0.0024 17.7 0.0 0.01 15.6 0.0 2.1 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|390938231|ref|YP_006401969.1| - 0.0027 16.9 0.0 0.0047 16.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_chain PF00289.17 gi|390938231|ref|YP_006401969.1| - 0.0031 17.6 0.0 0.012 15.7 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_10 PF13460.1 gi|390938231|ref|YP_006401969.1| - 0.0052 16.8 0.0 0.025 14.5 0.0 2.1 2 0 0 2 2 2 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|390938231|ref|YP_006401969.1| - 0.013 14.4 0.1 0.026 13.4 0.0 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.16 gi|390938231|ref|YP_006401969.1| - 0.032 13.6 0.0 0.051 12.9 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pyr_redox PF00070.22 gi|390938231|ref|YP_006401969.1| - 0.038 14.3 0.3 0.28 11.5 0.1 2.4 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AIRC PF00731.15 gi|390938232|ref|YP_006401970.1| - 2.7e-48 163.0 0.1 3.2e-48 162.8 0.1 1.0 1 0 0 1 1 1 1 AIR carboxylase SCO1-SenC PF02630.9 gi|390938232|ref|YP_006401970.1| - 0.024 14.2 0.0 0.031 13.8 0.0 1.1 1 0 0 1 1 1 0 SCO1/SenC THF_DHG_CYH_C PF02882.14 gi|390938232|ref|YP_006401970.1| - 0.026 13.5 0.1 0.037 13.0 0.0 1.3 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PrpR_N PF06506.6 gi|390938232|ref|YP_006401970.1| - 0.053 12.9 0.1 0.065 12.6 0.1 1.3 1 0 0 1 1 1 0 Propionate catabolism activator ThiF PF00899.16 gi|390938232|ref|YP_006401970.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 ThiF family AIRS_C PF02769.17 gi|390938233|ref|YP_006401971.1| - 1.4e-20 73.8 0.0 2.2e-20 73.2 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|390938233|ref|YP_006401971.1| - 6.9e-14 51.8 0.0 2.5e-13 50.0 0.0 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain MtmB PF05369.7 gi|390938233|ref|YP_006401971.1| - 0.089 10.9 0.1 0.53 8.3 0.0 1.9 2 0 0 2 2 2 0 Monomethylamine methyltransferase MtmB Alpha-amyl_C2 PF07821.7 gi|390938233|ref|YP_006401971.1| - 0.13 12.1 0.0 1.3 8.9 0.0 2.7 1 1 1 2 2 2 0 Alpha-amylase C-terminal beta-sheet domain DUF1297 PF06973.7 gi|390938234|ref|YP_006401972.1| - 7.4e-75 250.3 0.2 1e-74 249.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|390938234|ref|YP_006401972.1| - 8.8e-45 151.4 0.0 2.1e-44 150.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|390938234|ref|YP_006401972.1| - 6.2e-07 29.3 0.0 1.8e-05 24.5 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain Lyase_1 PF00206.15 gi|390938235|ref|YP_006401973.1| - 7.4e-40 137.0 0.0 9.9e-40 136.6 0.0 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|390938235|ref|YP_006401973.1| - 9.3e-16 57.6 0.0 2.2e-15 56.4 0.0 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ANTAR PF03861.9 gi|390938235|ref|YP_006401973.1| - 0.036 13.6 0.1 0.094 12.3 0.0 1.8 1 0 0 1 1 1 0 ANTAR domain DUF1297 PF06973.7 gi|390938236|ref|YP_006401974.1| - 1.1e-71 240.0 0.0 1.4e-71 239.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|390938236|ref|YP_006401974.1| - 9.5e-40 135.2 0.0 1.3e-39 134.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|390938236|ref|YP_006401974.1| - 9.3e-05 22.2 0.0 0.00031 20.5 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|390938236|ref|YP_006401974.1| - 0.15 11.3 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Pribosyltran PF00156.22 gi|390938237|ref|YP_006401975.1| - 4.6e-19 68.3 0.2 7.7e-19 67.6 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|390938237|ref|YP_006401975.1| - 0.00012 21.3 0.0 0.00017 20.8 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|390938237|ref|YP_006401975.1| - 0.01 15.1 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase POR PF01558.13 gi|390938238|ref|YP_006401976.1| - 1.3e-27 96.8 0.0 1.5e-27 96.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|390938239|ref|YP_006401977.1| - 5.3e-30 104.0 1.0 1.3e-29 102.7 0.2 1.8 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|390938240|ref|YP_006401978.1| - 4.3e-67 225.9 0.2 5.8e-67 225.5 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|390938240|ref|YP_006401978.1| - 8.3e-12 45.1 0.0 1.9e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|390938240|ref|YP_006401978.1| - 0.0011 18.4 0.2 0.0021 17.5 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.2 gi|390938241|ref|YP_006401979.1| - 4.8e-12 46.0 21.3 1.4e-08 35.0 7.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|390938241|ref|YP_006401979.1| - 1.6e-11 43.3 14.0 5.3e-06 25.8 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|390938241|ref|YP_006401979.1| - 2.2e-10 40.2 5.6 4e-05 23.3 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|390938241|ref|YP_006401979.1| - 4.6e-10 38.9 12.9 1.6e-05 24.5 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|390938241|ref|YP_006401979.1| - 1.3e-09 38.1 7.0 0.00031 20.9 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|390938241|ref|YP_006401979.1| - 4e-09 35.8 14.5 0.00015 21.5 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|390938241|ref|YP_006401979.1| - 7.2e-09 35.3 21.7 2.4e-07 30.4 7.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|390938241|ref|YP_006401979.1| - 3.2e-07 30.1 14.1 0.0017 18.5 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|390938241|ref|YP_006401979.1| - 4.8e-07 30.4 7.6 0.00022 21.9 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|390938241|ref|YP_006401979.1| - 6.6e-07 29.2 21.8 1.4e-05 25.0 8.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|390938241|ref|YP_006401979.1| - 3.3e-06 27.3 10.6 0.00021 21.5 8.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|390938241|ref|YP_006401979.1| - 3.4e-05 24.0 15.0 0.025 15.1 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|390938241|ref|YP_006401979.1| - 0.00088 19.7 10.0 0.049 14.1 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|390938241|ref|YP_006401979.1| - 0.0017 18.6 10.8 0.042 14.2 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|390938241|ref|YP_006401979.1| - 0.0023 18.2 13.9 0.14 12.5 2.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain TNFR_c6 PF00020.13 gi|390938241|ref|YP_006401979.1| - 4.4 7.4 7.8 12 6.0 0.4 2.4 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region HycI PF01750.13 gi|390938242|ref|YP_006401980.1| - 5.1e-14 51.9 0.2 7.3e-14 51.4 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease TPP_enzyme_C PF02775.16 gi|390938243|ref|YP_006401981.1| - 3.7e-24 85.0 0.3 5e-24 84.6 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|390938244|ref|YP_006401982.1| - 6.1e-74 248.3 0.2 8.1e-74 247.9 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|390938244|ref|YP_006401982.1| - 8.4e-05 22.5 0.0 0.00016 21.5 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|390938245|ref|YP_006401983.1| - 9.5e-14 50.3 13.6 7.9e-08 31.5 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|390938245|ref|YP_006401983.1| - 7e-10 38.6 9.9 9.1e-10 38.2 6.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|390938245|ref|YP_006401983.1| - 2.3e-09 36.9 8.9 3.3e-09 36.4 6.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|390938245|ref|YP_006401983.1| - 8.4e-09 34.9 13.5 1.4e-05 24.7 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|390938245|ref|YP_006401983.1| - 1e-08 35.4 8.9 1.6e-08 34.8 6.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|390938245|ref|YP_006401983.1| - 8.1e-08 32.8 8.4 8.7e-05 23.1 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|390938245|ref|YP_006401983.1| - 2e-07 30.5 10.7 0.00074 19.2 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|390938245|ref|YP_006401983.1| - 4.4e-07 30.0 20.3 3.5e-06 27.1 7.8 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|390938245|ref|YP_006401983.1| - 0.00017 22.0 11.4 0.078 13.5 0.8 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|390938245|ref|YP_006401983.1| - 0.00027 21.2 12.4 0.003 17.8 1.3 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|390938245|ref|YP_006401983.1| - 0.0019 18.3 10.6 0.14 12.5 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|390938245|ref|YP_006401983.1| - 0.0021 18.0 11.2 0.12 12.4 8.6 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|390938245|ref|YP_006401983.1| - 0.012 15.9 10.0 0.19 12.1 1.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|390938245|ref|YP_006401983.1| - 0.088 12.7 5.5 0.13 12.1 3.8 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|390938245|ref|YP_006401983.1| - 0.19 12.1 13.1 0.79 10.1 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|390938245|ref|YP_006401983.1| - 0.91 10.2 15.1 0.22 12.1 4.7 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|390938246|ref|YP_006401984.1| - 1.9e-33 115.8 0.1 2.2e-33 115.5 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Tenui_PVC2 PF06656.6 gi|390938247|ref|YP_006401985.1| - 0.16 9.7 0.7 0.25 9.1 0.5 1.2 1 0 0 1 1 1 0 Tenuivirus PVC2 protein ABC2_membrane_3 PF12698.2 gi|390938247|ref|YP_006401985.1| - 2.7 6.9 12.7 4 6.3 8.8 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein SNF PF00209.13 gi|390938249|ref|YP_006401987.1| - 6.8e-52 176.6 39.7 5.5e-28 97.7 14.3 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF1516 PF07457.6 gi|390938249|ref|YP_006401987.1| - 1.5 8.9 13.3 3.5 7.7 1.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1516) DUF4231 PF14015.1 gi|390938250|ref|YP_006401988.1| - 0.11 12.4 0.2 9 6.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) Aldolase_II PF00596.16 gi|390938251|ref|YP_006401989.1| - 1.6e-45 154.9 0.2 1.9e-45 154.7 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain TFIIA_gamma_N PF02268.11 gi|390938251|ref|YP_006401989.1| - 0.09 12.3 0.1 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain Glycos_transf_2 PF00535.21 gi|390938253|ref|YP_006401991.1| - 1.8e-22 79.8 0.0 2.7e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|390938253|ref|YP_006401991.1| - 1.1e-11 44.9 0.0 2.1e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|390938253|ref|YP_006401991.1| - 0.0091 15.3 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|390938253|ref|YP_006401991.1| - 0.13 12.6 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF373 PF04123.8 gi|390938253|ref|YP_006401991.1| - 0.32 9.9 4.6 1.9 7.4 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Glyco_tranf_2_3 PF13641.1 gi|390938254|ref|YP_006401992.1| - 3.6e-32 112.0 0.0 6.1e-32 111.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|390938254|ref|YP_006401992.1| - 4.9e-28 97.9 0.1 1e-27 96.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|390938254|ref|YP_006401992.1| - 8.5e-20 71.2 0.1 1.5e-19 70.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|390938254|ref|YP_006401992.1| - 5.3e-15 55.1 0.1 1.7e-14 53.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|390938254|ref|YP_006401992.1| - 0.00039 19.6 0.0 0.00064 18.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|390938254|ref|YP_006401992.1| - 0.00069 19.8 0.1 0.0027 18.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 2 O-antigen_lig PF13425.1 gi|390938254|ref|YP_006401992.1| - 1.6 8.7 10.0 2.1 8.3 6.1 1.7 2 0 0 2 2 2 0 O-antigen ligase like membrane protein NdhL PF10716.4 gi|390938254|ref|YP_006401992.1| - 2.4 7.9 6.7 2.6 7.8 0.7 2.6 2 1 0 2 2 2 0 NADH dehydrogenase transmembrane subunit Glyco_transf_4 PF13439.1 gi|390938256|ref|YP_006401994.1| - 1.4e-13 50.9 0.0 1.6e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|390938256|ref|YP_006401994.1| - 3.2e-10 40.3 0.3 4e-10 40.0 0.2 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|390938256|ref|YP_006401994.1| - 0.00018 21.3 0.0 0.00022 21.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|390938256|ref|YP_006401994.1| - 0.00081 18.9 0.0 0.00084 18.8 0.0 1.1 1 0 0 1 1 1 1 Starch synthase catalytic domain Radical_SAM PF04055.16 gi|390938256|ref|YP_006401994.1| - 0.15 12.2 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Radical SAM superfamily YflT PF11181.3 gi|390938257|ref|YP_006401995.1| - 0.051 13.7 0.0 8.7 6.5 0.0 2.1 2 0 0 2 2 2 0 Heat induced stress protein YflT PIN PF01850.16 gi|390938258|ref|YP_006401996.1| - 6.9e-16 58.6 0.4 8.2e-16 58.4 0.3 1.1 1 0 0 1 1 1 1 PIN domain Methyltransf_21 PF05050.7 gi|390938260|ref|YP_006401998.1| - 2.5e-14 53.5 0.0 2.9e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|390938260|ref|YP_006401998.1| - 0.054 13.0 0.1 0.11 12.0 0.0 1.4 1 1 0 1 1 1 0 Met-10+ like-protein Hydrolase PF00702.21 gi|390938260|ref|YP_006401998.1| - 0.084 13.2 0.0 0.096 13.0 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Glyco_transf_4 PF13439.1 gi|390938261|ref|YP_006401999.1| - 9.4e-10 38.4 0.1 1e-09 38.3 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|390938261|ref|YP_006401999.1| - 4.6e-05 23.6 0.3 5.1e-05 23.4 0.2 1.0 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|390938261|ref|YP_006401999.1| - 0.017 14.6 0.1 0.017 14.6 0.1 1.0 1 0 0 1 1 1 0 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|390938261|ref|YP_006401999.1| - 0.018 14.9 0.0 0.019 14.8 0.0 1.0 1 0 0 1 1 1 0 Glycosyl transferase 4-like CbiA PF01656.18 gi|390938261|ref|YP_006401999.1| - 0.07 12.5 0.0 0.071 12.5 0.0 1.0 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Glyco_trans_1_4 PF13692.1 gi|390938262|ref|YP_006402000.1| - 1.1e-09 38.5 0.0 4e-09 36.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|390938265|ref|YP_006402003.1| - 4.4e-21 75.0 0.1 3.7e-20 72.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|390938265|ref|YP_006402003.1| - 1.2e-08 34.8 0.2 8.7e-08 32.0 0.2 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|390938265|ref|YP_006402003.1| - 1.5e-07 31.6 0.0 1.4e-06 28.5 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|390938265|ref|YP_006402003.1| - 2.9e-05 24.2 0.0 6.3e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain DUF505 PF04458.7 gi|390938265|ref|YP_006402003.1| - 0.045 11.8 0.6 0.066 11.3 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF4613 PF15390.1 gi|390938265|ref|YP_006402003.1| - 0.1 10.7 0.0 0.15 10.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) GIDA_assoc_3 PF13932.1 gi|390938265|ref|YP_006402003.1| - 0.13 12.3 2.6 4.9 7.2 0.1 2.5 2 0 0 2 2 2 0 GidA associated domain 3 Glycos_transf_1 PF00534.15 gi|390938267|ref|YP_006402005.1| - 2.9e-29 101.6 0.0 4.6e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|390938267|ref|YP_006402005.1| - 2.8e-15 56.4 0.4 9.1e-15 54.8 0.3 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|390938267|ref|YP_006402005.1| - 3.4e-13 49.8 0.4 8.3e-13 48.6 0.1 1.8 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|390938267|ref|YP_006402005.1| - 1.6e-09 38.1 0.0 6.2e-09 36.1 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|390938267|ref|YP_006402005.1| - 4.9e-05 23.1 0.6 0.00015 21.6 0.4 1.8 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|390938267|ref|YP_006402005.1| - 0.023 14.9 0.0 0.046 14.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|390938268|ref|YP_006402006.1| - 4.5e-13 48.9 0.0 7.5e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|390938268|ref|YP_006402006.1| - 0.087 13.1 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 PS_pyruv_trans PF04230.8 gi|390938271|ref|YP_006402009.1| - 1.4e-23 84.0 0.7 3.6e-23 82.7 0.5 1.6 1 1 0 1 1 1 1 Polysaccharide pyruvyl transferase Asp_protease_2 PF13650.1 gi|390938273|ref|YP_006402011.1| - 0.00032 21.1 0.0 0.00044 20.7 0.0 1.4 1 1 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|390938273|ref|YP_006402011.1| - 0.00089 19.1 0.0 0.001 18.9 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease Asp PF00026.18 gi|390938273|ref|YP_006402011.1| - 0.11 11.7 0.0 0.13 11.5 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic aspartyl protease Acyl_transf_3 PF01757.17 gi|390938274|ref|YP_006402012.1| - 0.056 12.2 0.1 0.057 12.2 0.1 1.0 1 0 0 1 1 1 0 Acyltransferase family Ribosomal_L40e PF01020.12 gi|390938274|ref|YP_006402012.1| - 0.063 12.8 0.1 0.094 12.3 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L40e family Transposase_22 PF02994.9 gi|390938275|ref|YP_006402013.1| - 3.2 6.1 8.3 0.59 8.5 3.4 1.4 2 0 0 2 2 2 0 L1 transposable element Epimerase PF01370.16 gi|390938276|ref|YP_006402014.1| - 9.2e-59 198.7 0.0 1.1e-58 198.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|390938276|ref|YP_006402014.1| - 5.9e-27 94.2 0.0 7.4e-27 93.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|390938276|ref|YP_006402014.1| - 3.4e-18 65.5 0.0 3.3e-17 62.3 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|390938276|ref|YP_006402014.1| - 4.8e-18 64.8 0.0 6.2e-18 64.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|390938276|ref|YP_006402014.1| - 1.9e-10 41.0 0.0 2.7e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|390938276|ref|YP_006402014.1| - 2.8e-09 36.2 0.1 4.5e-08 32.3 0.0 2.2 1 1 1 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|390938276|ref|YP_006402014.1| - 2.8e-05 24.0 0.1 0.00036 20.4 0.1 2.1 1 1 0 1 1 1 1 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|390938276|ref|YP_006402014.1| - 0.00062 19.1 0.0 0.011 15.1 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|390938276|ref|YP_006402014.1| - 0.0077 15.9 0.0 0.057 13.0 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|390938276|ref|YP_006402014.1| - 0.036 14.0 0.1 0.076 13.0 0.1 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Ldh_1_N PF00056.18 gi|390938276|ref|YP_006402014.1| - 0.084 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DAO PF01266.19 gi|390938276|ref|YP_006402014.1| - 0.089 11.6 0.8 0.19 10.5 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase KR PF08659.5 gi|390938276|ref|YP_006402014.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 KR domain Glycos_transf_1 PF00534.15 gi|390938277|ref|YP_006402015.1| - 3.3e-15 55.9 0.0 5.6e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|390938277|ref|YP_006402015.1| - 1.3e-13 51.3 0.1 1.9e-12 47.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|390938278|ref|YP_006402016.1| - 1.2e-07 31.3 0.0 3.5e-07 29.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|390938278|ref|YP_006402016.1| - 3.5e-07 30.4 0.0 8.8e-07 29.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Auto_anti-p27 PF06677.7 gi|390938280|ref|YP_006402018.1| - 0.001 18.7 0.4 0.16 11.7 0.0 2.2 2 0 0 2 2 2 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.2 gi|390938280|ref|YP_006402018.1| - 0.028 14.2 0.6 6.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|390938280|ref|YP_006402018.1| - 0.052 13.5 2.3 0.58 10.1 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|390938280|ref|YP_006402018.1| - 0.069 12.4 1.3 4.5 6.6 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding DUF2296 PF10058.4 gi|390938280|ref|YP_006402018.1| - 0.11 12.2 0.7 3.9 7.3 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) RNA_POL_M_15KD PF02150.11 gi|390938280|ref|YP_006402018.1| - 0.39 10.4 1.8 1.3 8.7 0.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.15 gi|390938280|ref|YP_006402018.1| - 0.4 10.5 1.7 3.6 7.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin zf-HIT PF04438.11 gi|390938280|ref|YP_006402018.1| - 0.51 10.0 3.1 3.2 7.4 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF35_N PF12172.3 gi|390938280|ref|YP_006402018.1| - 0.84 9.6 3.2 3.9 7.5 0.2 2.4 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Pkinase PF00069.20 gi|390938281|ref|YP_006402019.1| - 0.00019 20.6 0.0 0.00025 20.2 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|390938281|ref|YP_006402019.1| - 0.01 15.5 0.1 0.17 11.6 0.0 2.1 1 1 1 2 2 2 0 Phosphotransferase enzyme family tRNA_NucTransf2 PF09249.6 gi|390938282|ref|YP_006402020.1| - 3.7e-36 123.4 0.0 7.4e-36 122.5 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|390938282|ref|YP_006402020.1| - 5.8e-10 39.3 0.2 2.5e-09 37.3 0.1 2.1 1 1 0 1 1 1 1 Nucleotidyltransferase domain LigT_PEase PF02834.11 gi|390938283|ref|YP_006402021.1| - 3.7e-29 100.5 0.0 5.2e-15 55.1 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|390938283|ref|YP_006402021.1| - 1.5e-10 41.1 0.0 6.7e-10 39.0 0.0 1.8 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.1 gi|390938283|ref|YP_006402021.1| - 7.3e-10 38.7 0.0 8.9e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AAA_18 PF13238.1 gi|390938284|ref|YP_006402022.1| - 1.6e-11 44.6 0.1 2.6e-11 43.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|390938284|ref|YP_006402022.1| - 1e-09 39.2 0.1 1.3e-09 38.8 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|390938284|ref|YP_006402022.1| - 2.9e-07 30.4 0.0 5e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|390938284|ref|YP_006402022.1| - 0.0027 17.6 0.0 0.0035 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain CoaE PF01121.15 gi|390938284|ref|YP_006402022.1| - 0.0032 16.9 0.1 0.5 9.7 0.0 2.2 2 0 0 2 2 2 2 Dephospho-CoA kinase cobW PF02492.14 gi|390938284|ref|YP_006402022.1| - 0.0042 16.5 0.0 0.096 12.1 0.0 2.2 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|390938284|ref|YP_006402022.1| - 0.038 13.7 0.2 0.23 11.2 0.0 2.2 1 1 0 2 2 2 0 Part of AAA domain Zeta_toxin PF06414.7 gi|390938284|ref|YP_006402022.1| - 0.049 12.7 0.1 0.91 8.5 0.0 2.5 2 1 1 3 3 3 0 Zeta toxin AAA_25 PF13481.1 gi|390938284|ref|YP_006402022.1| - 0.053 12.9 0.7 3.9 6.8 0.5 2.4 1 1 0 1 1 1 0 AAA domain DUF3987 PF13148.1 gi|390938284|ref|YP_006402022.1| - 0.12 10.9 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) NB-ARC PF00931.17 gi|390938284|ref|YP_006402022.1| - 0.18 10.6 0.5 0.29 9.9 0.3 1.6 1 1 0 1 1 1 0 NB-ARC domain RNA_binding PF01877.12 gi|390938285|ref|YP_006402023.1| - 5.2e-17 61.9 0.2 7.1e-17 61.5 0.2 1.2 1 0 0 1 1 1 1 RNA binding DUF1107 PF06526.7 gi|390938285|ref|YP_006402023.1| - 0.07 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1107) PCNA_N PF00705.13 gi|390938286|ref|YP_006402024.1| - 3.1e-14 52.5 0.3 9.5e-14 50.9 0.0 1.9 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|390938286|ref|YP_006402024.1| - 6.6e-06 26.0 2.1 0.00017 21.5 0.3 2.4 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|390938286|ref|YP_006402024.1| - 1e-05 24.7 0.4 1.4e-05 24.3 0.1 1.5 2 0 0 2 2 2 1 Rad9 Rad1 PF02144.11 gi|390938286|ref|YP_006402024.1| - 0.00018 20.3 0.7 0.25 10.0 0.1 2.1 1 1 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Hus1 PF04005.7 gi|390938286|ref|YP_006402024.1| - 0.1 11.5 0.1 0.24 10.2 0.0 1.7 1 1 0 1 1 1 0 Hus1-like protein Lactamase_B PF00753.22 gi|390938288|ref|YP_006402026.1| - 3.2e-21 75.8 0.0 3.7e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|390938288|ref|YP_006402026.1| - 0.00028 20.5 0.1 0.00039 20.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|390938288|ref|YP_006402026.1| - 0.044 13.5 0.0 0.053 13.2 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain MacB_PCD PF12704.2 gi|390938289|ref|YP_006402027.1| - 3.2e-37 128.3 1.9 3.2e-37 128.3 1.3 1.8 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|390938289|ref|YP_006402027.1| - 8.3e-20 70.7 9.9 8.3e-20 70.7 6.8 2.2 2 1 0 2 2 2 1 FtsX-like permease family DUF21 PF01595.15 gi|390938289|ref|YP_006402027.1| - 1.3 8.2 11.4 2.5 7.3 7.4 1.8 1 1 1 2 2 2 0 Domain of unknown function DUF21 NPCBM_assoc PF10633.4 gi|390938290|ref|YP_006402028.1| - 7.8e-10 38.6 5.9 0.022 14.7 0.1 5.4 5 0 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase Gemini_mov PF01708.11 gi|390938290|ref|YP_006402028.1| - 0.023 14.2 0.3 0.05 13.1 0.2 1.5 1 0 0 1 1 1 0 Geminivirus putative movement protein Wzt_C PF14524.1 gi|390938290|ref|YP_006402028.1| - 0.024 14.3 0.9 0.75 9.4 0.0 2.9 3 0 0 3 3 3 0 Wzt C-terminal domain ABC_tran PF00005.22 gi|390938291|ref|YP_006402029.1| - 3.7e-35 121.1 0.0 4.6e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938291|ref|YP_006402029.1| - 8e-13 49.0 0.2 7.5e-06 26.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|390938291|ref|YP_006402029.1| - 5.7e-05 22.5 0.2 0.0001 21.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|390938291|ref|YP_006402029.1| - 6.2e-05 22.2 0.2 0.00014 21.0 0.1 1.6 1 1 1 2 2 2 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|390938291|ref|YP_006402029.1| - 0.00022 20.5 0.1 0.19 10.9 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|390938291|ref|YP_006402029.1| - 0.00056 20.3 0.0 0.001 19.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|390938291|ref|YP_006402029.1| - 0.00065 19.2 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_15 PF13175.1 gi|390938291|ref|YP_006402029.1| - 0.002 17.2 0.0 0.93 8.4 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|390938291|ref|YP_006402029.1| - 0.002 18.1 0.2 0.0084 16.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|390938291|ref|YP_006402029.1| - 0.0021 18.2 0.2 0.01 16.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|390938291|ref|YP_006402029.1| - 0.0052 17.6 0.2 0.012 16.3 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|390938291|ref|YP_006402029.1| - 0.0091 15.8 0.1 0.022 14.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|390938291|ref|YP_006402029.1| - 0.015 14.7 0.1 0.036 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|390938291|ref|YP_006402029.1| - 0.023 14.5 0.1 0.23 11.4 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|390938291|ref|YP_006402029.1| - 0.038 13.9 0.8 0.078 12.9 0.5 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|390938291|ref|YP_006402029.1| - 0.045 14.0 0.0 0.12 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|390938291|ref|YP_006402029.1| - 0.062 12.7 0.0 0.069 12.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain cobW PF02492.14 gi|390938291|ref|YP_006402029.1| - 0.091 12.2 0.1 0.15 11.4 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.4 gi|390938291|ref|YP_006402029.1| - 0.094 11.2 0.1 0.27 9.7 0.1 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.7 gi|390938291|ref|YP_006402029.1| - 0.1 12.2 0.1 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Zot PF05707.7 gi|390938291|ref|YP_006402029.1| - 0.1 12.0 0.0 0.71 9.3 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) PadR PF03551.9 gi|390938292|ref|YP_006402030.1| - 3.1e-14 52.5 0.2 5e-14 51.8 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|390938292|ref|YP_006402030.1| - 5.8e-05 23.0 0.0 0.00011 22.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|390938292|ref|YP_006402030.1| - 0.00031 20.5 0.4 0.00077 19.2 0.2 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|390938292|ref|YP_006402030.1| - 0.01 16.1 0.0 0.023 15.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|390938292|ref|YP_006402030.1| - 0.012 15.7 0.1 0.035 14.1 0.0 1.9 2 1 1 3 3 3 0 Hypothetical protein (DUF2513) DUF4364 PF14277.1 gi|390938292|ref|YP_006402030.1| - 0.058 13.0 0.1 0.092 12.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) YjcQ PF09639.5 gi|390938292|ref|YP_006402030.1| - 0.088 12.9 0.2 0.2 11.7 0.1 1.7 1 1 0 1 1 1 0 YjcQ protein ABC_tran PF00005.22 gi|390938293|ref|YP_006402031.1| - 2.8e-34 118.3 0.0 4.8e-34 117.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938293|ref|YP_006402031.1| - 2.5e-16 60.5 0.3 3.6e-14 53.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|390938293|ref|YP_006402031.1| - 9.7e-07 28.1 0.5 0.00028 20.0 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain DUF4162 PF13732.1 gi|390938293|ref|YP_006402031.1| - 1.5e-06 28.6 0.0 2.9e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|390938293|ref|YP_006402031.1| - 8.4e-05 22.9 0.5 0.00013 22.3 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|390938293|ref|YP_006402031.1| - 9.2e-05 21.8 0.1 0.00017 21.0 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|390938293|ref|YP_006402031.1| - 0.00037 19.7 0.0 0.0021 17.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|390938293|ref|YP_006402031.1| - 0.00089 18.9 0.2 0.002 17.8 0.2 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|390938293|ref|YP_006402031.1| - 0.0014 18.7 0.2 0.03 14.5 0.1 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|390938293|ref|YP_006402031.1| - 0.0017 17.8 0.0 0.003 17.0 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|390938293|ref|YP_006402031.1| - 0.021 14.7 0.0 0.028 14.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|390938293|ref|YP_006402031.1| - 0.044 13.4 0.4 5.8 6.5 0.1 2.4 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.1 gi|390938293|ref|YP_006402031.1| - 0.055 13.6 0.6 0.93 9.6 0.4 2.5 2 1 0 2 2 1 0 AAA domain AAA_30 PF13604.1 gi|390938293|ref|YP_006402031.1| - 0.063 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|390938293|ref|YP_006402031.1| - 0.088 11.4 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MutS_V PF00488.16 gi|390938293|ref|YP_006402031.1| - 0.1 11.9 0.1 3 7.2 0.0 2.2 2 0 0 2 2 2 0 MutS domain V IstB_IS21 PF01695.12 gi|390938293|ref|YP_006402031.1| - 0.11 11.9 0.2 9.4 5.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|390938293|ref|YP_006402031.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|390938293|ref|YP_006402031.1| - 0.12 11.7 0.2 5.1 6.4 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|390938293|ref|YP_006402031.1| - 0.16 11.3 0.3 4.5 6.6 0.2 2.3 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|390938294|ref|YP_006402032.1| - 6.7e-35 120.1 32.2 6.7e-35 120.1 22.3 2.1 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|390938294|ref|YP_006402032.1| - 3.7e-19 68.9 32.3 3.7e-19 68.9 22.4 1.8 1 1 2 3 3 3 1 ABC-2 family transporter protein AFOR_N PF02730.10 gi|390938295|ref|YP_006402033.1| - 5.5e-25 87.8 0.0 8.1e-25 87.3 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|390938295|ref|YP_006402033.1| - 8.2e-14 51.0 0.0 3.1e-13 49.1 0.0 1.8 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 tRNA-synt_1d PF00750.14 gi|390938296|ref|YP_006402034.1| - 1.4e-36 126.0 1.0 2e-18 66.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|390938296|ref|YP_006402034.1| - 4.1e-15 55.7 1.6 7.9e-15 54.8 0.3 2.2 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1e PF01406.14 gi|390938296|ref|YP_006402034.1| - 0.0021 17.2 0.0 0.017 14.2 0.0 2.3 2 2 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain Arg_tRNA_synt_N PF03485.11 gi|390938296|ref|YP_006402034.1| - 0.081 13.4 0.0 0.21 12.1 0.0 1.8 1 0 0 1 1 1 0 Arginyl tRNA synthetase N terminal domain tRNA-synt_1g PF09334.6 gi|390938296|ref|YP_006402034.1| - 0.1 11.1 0.0 7.2 5.1 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (M) EamA PF00892.15 gi|390938297|ref|YP_006402035.1| - 2.6e-12 46.8 32.2 2.5e-06 27.5 8.0 2.5 1 1 0 2 2 2 2 EamA-like transporter family Git3_C PF11970.3 gi|390938297|ref|YP_006402035.1| - 4.7 7.0 7.2 1.5 8.6 0.2 3.0 3 0 0 3 3 3 0 G protein-coupled glucose receptor regulating Gpa2 C-term MoeA_N PF03453.12 gi|390938298|ref|YP_006402036.1| - 9.1e-47 158.4 0.4 1.5e-46 157.7 0.3 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|390938298|ref|YP_006402036.1| - 2.2e-24 85.5 0.0 3.8e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|390938298|ref|YP_006402036.1| - 3.9e-19 68.3 0.1 1.4e-18 66.6 0.1 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) ArsA_ATPase PF02374.10 gi|390938299|ref|YP_006402037.1| - 4e-37 127.9 0.0 5.2e-37 127.5 0.0 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|390938299|ref|YP_006402037.1| - 6.5e-14 51.7 0.1 2.1e-13 50.0 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|390938299|ref|YP_006402037.1| - 1.2e-06 28.5 0.0 3.5e-06 27.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|390938299|ref|YP_006402037.1| - 0.00033 20.1 0.7 0.00096 18.6 0.1 2.1 2 1 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|390938299|ref|YP_006402037.1| - 0.0077 15.3 0.0 0.082 11.9 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ IstB_IS21 PF01695.12 gi|390938299|ref|YP_006402037.1| - 0.016 14.6 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein PhoH PF02562.11 gi|390938299|ref|YP_006402037.1| - 0.056 12.6 0.1 0.096 11.9 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein APS_kinase PF01583.15 gi|390938299|ref|YP_006402037.1| - 0.1 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_16 PF13191.1 gi|390938299|ref|YP_006402037.1| - 0.14 12.1 0.1 0.26 11.2 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|390938299|ref|YP_006402037.1| - 0.18 12.6 3.5 6.2 7.6 2.4 2.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|390938299|ref|YP_006402037.1| - 0.2 11.9 1.0 0.79 10.0 0.7 2.3 1 1 0 1 1 1 0 AAA domain CstA PF02554.9 gi|390938301|ref|YP_006402039.1| - 3.8e-117 391.1 29.3 3.8e-117 391.1 20.3 1.6 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|390938301|ref|YP_006402039.1| - 5e-25 88.2 8.4 5e-25 88.2 5.8 3.6 2 1 1 3 3 3 1 C-terminal domain on CstA (DUF4161) PIG-U PF06728.8 gi|390938302|ref|YP_006402040.1| - 0.083 11.7 4.0 0.096 11.5 2.8 1.0 1 0 0 1 1 1 0 GPI transamidase subunit PIG-U EamA PF00892.15 gi|390938302|ref|YP_006402040.1| - 0.18 11.8 5.9 0.27 11.3 4.1 1.3 1 1 0 1 1 1 0 EamA-like transporter family DUF3185 PF11381.3 gi|390938302|ref|YP_006402040.1| - 0.3 10.8 6.2 0.24 11.1 3.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3185) DUF3040 PF11239.3 gi|390938302|ref|YP_006402040.1| - 0.71 9.9 2.6 0.87 9.6 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Polysacc_synt PF01943.12 gi|390938304|ref|YP_006402042.1| - 5.8e-22 78.2 30.1 5.8e-22 78.2 20.9 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|390938304|ref|YP_006402042.1| - 2.9e-08 33.5 28.8 2.9e-08 33.5 19.9 3.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|390938304|ref|YP_006402042.1| - 0.0013 18.4 9.6 0.0013 18.4 6.7 5.1 2 1 2 5 5 5 3 MatE AIRS PF00586.19 gi|390938305|ref|YP_006402043.1| - 8.9e-12 45.1 0.0 1.9e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|390938305|ref|YP_006402043.1| - 2.3e-06 27.7 0.0 3.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DSPc PF00782.15 gi|390938306|ref|YP_006402044.1| - 9e-09 35.0 0.0 1.8e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|390938306|ref|YP_006402044.1| - 0.012 14.9 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein-tyrosine phosphatase AAA_16 PF13191.1 gi|390938306|ref|YP_006402044.1| - 0.018 15.0 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain CDKN3 PF05706.7 gi|390938306|ref|YP_006402044.1| - 0.039 13.3 0.0 0.07 12.5 0.0 1.4 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) MS_channel PF00924.13 gi|390938308|ref|YP_006402046.1| - 1.7e-15 56.8 8.9 1.7e-15 56.8 6.2 2.6 2 1 1 3 3 3 1 Mechanosensitive ion channel PT-VENN PF04829.8 gi|390938308|ref|YP_006402046.1| - 1.1 8.7 5.3 2.5 7.7 3.7 1.5 1 0 0 1 1 1 0 Pre-toxin domain with VENN motif SNARE_assoc PF09335.6 gi|390938309|ref|YP_006402047.1| - 1.1e-10 41.8 6.3 1.1e-10 41.8 4.4 2.2 1 1 1 2 2 2 1 SNARE associated Golgi protein DUF2299 PF10061.4 gi|390938310|ref|YP_006402048.1| - 9.1e-19 67.2 0.0 1e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) DUF1282 PF06930.7 gi|390938311|ref|YP_006402049.1| - 1.2 8.7 14.0 5.3 6.6 9.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) DUF3487 PF11990.3 gi|390938311|ref|YP_006402049.1| - 1.3 8.4 16.3 0.025 13.9 2.5 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3487) Tmemb_18A PF09771.4 gi|390938311|ref|YP_006402049.1| - 2.3 8.2 4.6 1.7 8.6 1.9 1.7 1 1 1 2 2 2 0 Transmembrane protein 188 FA_desaturase PF00487.19 gi|390938311|ref|YP_006402049.1| - 4.2 6.7 4.7 4.9 6.5 3.3 1.4 1 1 0 1 1 1 0 Fatty acid desaturase Yip1 PF04893.12 gi|390938311|ref|YP_006402049.1| - 7.1 6.1 23.6 49 3.3 16.4 2.0 1 1 0 1 1 1 0 Yip1 domain MarR_2 PF12802.2 gi|390938312|ref|YP_006402050.1| - 2.7e-08 33.3 0.2 1.1e-07 31.4 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|390938312|ref|YP_006402050.1| - 1.1e-07 31.2 0.2 2.9e-07 29.9 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|390938312|ref|YP_006402050.1| - 3.2e-07 29.9 0.8 1e-06 28.3 0.2 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|390938312|ref|YP_006402050.1| - 3.3e-06 26.7 1.3 3.8e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|390938312|ref|YP_006402050.1| - 5.1e-06 25.7 2.0 8.1e-06 25.1 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|390938312|ref|YP_006402050.1| - 6.2e-06 25.7 0.4 0.00032 20.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|390938312|ref|YP_006402050.1| - 2e-05 24.4 0.8 4.2e-05 23.4 0.6 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|390938312|ref|YP_006402050.1| - 0.00022 21.5 0.1 0.00053 20.2 0.0 1.7 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|390938312|ref|YP_006402050.1| - 0.00089 18.9 0.3 0.0019 17.9 0.2 1.6 1 1 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.1 gi|390938312|ref|YP_006402050.1| - 0.0042 16.8 0.0 0.0089 15.7 0.0 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain tRNA-synt_His PF13393.1 gi|390938312|ref|YP_006402050.1| - 0.0051 15.9 0.4 0.0062 15.6 0.2 1.0 1 0 0 1 1 1 1 Histidyl-tRNA synthetase YscJ_FliF PF01514.12 gi|390938312|ref|YP_006402050.1| - 0.0098 15.0 0.1 0.012 14.7 0.1 1.1 1 0 0 1 1 1 1 Secretory protein of YscJ/FliF family Rrf2 PF02082.15 gi|390938312|ref|YP_006402050.1| - 0.013 15.6 1.2 0.062 13.4 0.1 2.1 1 1 1 2 2 2 0 Transcriptional regulator MarR PF01047.17 gi|390938312|ref|YP_006402050.1| - 0.056 13.1 0.2 0.13 12.0 0.1 1.7 1 0 0 1 1 1 0 MarR family DUF387 PF04079.11 gi|390938312|ref|YP_006402050.1| - 0.063 12.6 1.3 0.36 10.1 0.1 2.0 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) Cdc6_C PF09079.6 gi|390938312|ref|YP_006402050.1| - 0.064 12.9 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 CDC6, C terminal Ish1 PF10281.4 gi|390938312|ref|YP_006402050.1| - 0.064 13.3 0.2 0.13 12.3 0.1 1.6 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein DUF830 PF05708.7 gi|390938312|ref|YP_006402050.1| - 0.067 13.1 0.4 0.19 11.7 0.2 1.7 1 1 1 2 2 2 0 Orthopoxvirus protein of unknown function (DUF830) EAP30 PF04157.11 gi|390938312|ref|YP_006402050.1| - 0.07 12.2 0.4 0.18 10.9 0.0 1.7 2 0 0 2 2 2 0 EAP30/Vps36 family Sigma70_r4 PF04545.11 gi|390938312|ref|YP_006402050.1| - 0.07 12.4 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.7 gi|390938312|ref|YP_006402050.1| - 0.07 12.7 0.2 0.15 11.6 0.2 1.6 1 0 0 1 1 1 0 HTH domain Vac_Fusion PF02346.11 gi|390938312|ref|YP_006402050.1| - 0.091 12.1 0.1 0.22 10.9 0.0 1.7 1 0 0 1 1 1 0 Chordopoxvirus fusion protein DUF977 PF06163.6 gi|390938312|ref|YP_006402050.1| - 0.098 12.4 0.3 6.1 6.6 0.0 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF977) DUF1732 PF08340.6 gi|390938312|ref|YP_006402050.1| - 0.11 12.3 1.1 0.2 11.5 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1732) Stn1_C PF12659.2 gi|390938312|ref|YP_006402050.1| - 0.11 12.2 0.2 0.23 11.2 0.2 1.5 1 1 1 2 2 2 0 Telomere capping C-terminal wHTH HTH_36 PF13730.1 gi|390938312|ref|YP_006402050.1| - 0.21 11.7 2.0 0.31 11.1 0.1 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain Radical_SAM PF04055.16 gi|390938314|ref|YP_006402052.1| - 2.9e-17 63.3 0.1 1.7e-16 60.8 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|390938314|ref|YP_006402052.1| - 9.7e-05 22.2 0.0 0.057 13.2 0.0 2.5 2 0 0 2 2 2 2 B12 binding domain tRNA-synt_1g PF09334.6 gi|390938315|ref|YP_006402053.1| - 3.4e-109 365.0 3.6 1.2e-107 360.0 2.5 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|390938315|ref|YP_006402053.1| - 1e-28 99.7 2.5 3.2e-14 51.8 0.5 3.9 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|390938315|ref|YP_006402053.1| - 1e-08 35.0 0.3 2.7e-08 33.6 0.0 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|390938315|ref|YP_006402053.1| - 1.7e-07 30.6 0.3 0.00056 19.1 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|390938315|ref|YP_006402053.1| - 0.0002 20.1 0.2 0.0092 14.6 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (K) Tctex-1 PF03645.8 gi|390938315|ref|YP_006402053.1| - 0.017 14.9 0.0 2.1 8.2 0.0 2.4 2 0 0 2 2 2 0 Tctex-1 family tRNA-synt_1d PF00750.14 gi|390938315|ref|YP_006402053.1| - 0.022 13.6 0.0 0.47 9.2 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (R) ROK PF00480.15 gi|390938316|ref|YP_006402054.1| - 2.3e-37 128.5 0.1 5.8e-37 127.2 0.0 1.6 2 0 0 2 2 2 1 ROK family Glucokinase PF02685.11 gi|390938316|ref|YP_006402054.1| - 0.00059 18.7 0.0 0.37 9.5 0.0 2.2 2 0 0 2 2 2 2 Glucokinase DUF4234 PF14018.1 gi|390938317|ref|YP_006402055.1| - 0.0039 16.8 4.1 0.0039 16.8 2.9 4.3 3 3 2 5 5 5 2 Domain of unknown function (DUF4234) Asparaginase_2 PF01112.13 gi|390938318|ref|YP_006402056.1| - 2.7e-62 210.3 0.0 3.7e-62 209.8 0.0 1.1 1 0 0 1 1 1 1 Asparaginase HAD_2 PF13419.1 gi|390938319|ref|YP_006402057.1| - 4.8e-08 33.4 0.0 1.4e-06 28.6 0.0 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|390938319|ref|YP_006402057.1| - 2.1e-07 31.2 0.0 3.4e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|390938319|ref|YP_006402057.1| - 4.4e-07 29.7 1.3 2.3e-05 24.1 0.1 2.1 2 0 0 2 2 2 1 NLI interacting factor-like phosphatase Hydrolase_3 PF08282.7 gi|390938319|ref|YP_006402057.1| - 1e-06 28.5 0.9 2.3e-05 24.1 0.3 2.7 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|390938319|ref|YP_006402057.1| - 0.0029 18.0 0.1 0.43 10.9 0.0 2.1 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Trp_syntA PF00290.15 gi|390938319|ref|YP_006402057.1| - 0.0043 15.6 0.0 0.0054 15.2 0.0 1.3 1 1 0 1 1 1 1 Tryptophan synthase alpha chain Kdo PF06293.9 gi|390938319|ref|YP_006402057.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family ATP_bind_1 PF03029.12 gi|390938320|ref|YP_006402058.1| - 5.5e-62 209.4 0.0 6.3e-62 209.2 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|390938320|ref|YP_006402058.1| - 1.7e-05 24.3 0.6 5.3e-05 22.7 0.3 1.9 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|390938320|ref|YP_006402058.1| - 0.00033 20.6 0.0 0.00075 19.5 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.1 gi|390938320|ref|YP_006402058.1| - 0.00048 19.7 0.0 0.00082 19.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|390938320|ref|YP_006402058.1| - 0.00055 19.4 0.0 0.012 15.0 0.0 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_17 PF13207.1 gi|390938320|ref|YP_006402058.1| - 0.0015 19.3 0.0 0.0031 18.3 0.0 1.6 2 0 0 2 2 1 1 AAA domain MMR_HSR1 PF01926.18 gi|390938320|ref|YP_006402058.1| - 0.0021 18.0 0.1 0.0058 16.5 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|390938320|ref|YP_006402058.1| - 0.0029 16.8 0.2 0.46 9.7 0.0 2.9 3 0 0 3 3 3 1 Ferrous iron transport protein B AAA_18 PF13238.1 gi|390938320|ref|YP_006402058.1| - 0.0032 17.7 0.0 0.018 15.3 0.0 2.1 2 1 0 2 2 2 1 AAA domain cobW PF02492.14 gi|390938320|ref|YP_006402058.1| - 0.007 15.8 0.0 0.018 14.4 0.0 1.8 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|390938320|ref|YP_006402058.1| - 0.013 15.3 1.7 0.8 9.5 0.0 2.6 3 0 0 3 3 3 0 Dynamin family Gtr1_RagA PF04670.7 gi|390938320|ref|YP_006402058.1| - 0.017 14.2 0.1 0.1 11.7 0.1 2.1 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region PduV-EutP PF10662.4 gi|390938320|ref|YP_006402058.1| - 0.019 14.4 0.1 0.87 9.0 0.0 3.0 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation T2SE PF00437.15 gi|390938320|ref|YP_006402058.1| - 0.025 13.4 0.0 0.1 11.4 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein SRP54 PF00448.17 gi|390938320|ref|YP_006402058.1| - 0.026 13.9 0.0 0.21 11.0 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|390938320|ref|YP_006402058.1| - 0.027 13.9 0.0 0.071 12.5 0.0 1.8 1 1 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|390938320|ref|YP_006402058.1| - 0.03 13.9 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|390938320|ref|YP_006402058.1| - 0.036 13.7 0.0 0.086 12.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|390938320|ref|YP_006402058.1| - 0.039 13.1 0.0 0.089 11.9 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_29 PF13555.1 gi|390938320|ref|YP_006402058.1| - 0.039 13.4 0.1 0.16 11.5 0.1 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain ArsA_ATPase PF02374.10 gi|390938320|ref|YP_006402058.1| - 0.043 12.8 0.0 0.12 11.4 0.0 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase DUF87 PF01935.12 gi|390938320|ref|YP_006402058.1| - 0.054 13.3 0.0 0.09 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_14 PF13173.1 gi|390938320|ref|YP_006402058.1| - 0.057 13.3 0.0 0.11 12.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|390938320|ref|YP_006402058.1| - 0.06 12.5 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_5 PF07728.9 gi|390938320|ref|YP_006402058.1| - 0.064 12.9 0.0 8.8 6.0 0.0 2.7 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|390938320|ref|YP_006402058.1| - 0.068 13.1 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|390938320|ref|YP_006402058.1| - 0.074 12.2 0.0 0.25 10.5 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Miro PF08477.8 gi|390938320|ref|YP_006402058.1| - 0.083 13.3 0.0 0.28 11.6 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein ArgK PF03308.11 gi|390938320|ref|YP_006402058.1| - 0.087 11.5 0.0 0.32 9.7 0.0 1.9 2 0 0 2 2 2 0 ArgK protein AAA_22 PF13401.1 gi|390938320|ref|YP_006402058.1| - 0.088 12.9 0.1 0.36 10.9 0.1 2.0 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|390938320|ref|YP_006402058.1| - 0.098 11.7 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF258 PF03193.11 gi|390938320|ref|YP_006402058.1| - 0.18 10.9 0.0 3.5 6.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Radical_SAM PF04055.16 gi|390938321|ref|YP_006402059.1| - 1.9e-19 70.4 0.0 1e-18 68.0 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|390938321|ref|YP_006402059.1| - 3e-06 27.4 0.0 5.8e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.1 gi|390938321|ref|YP_006402059.1| - 0.00035 19.6 0.2 0.00035 19.6 0.2 2.4 2 1 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|390938321|ref|YP_006402059.1| - 0.002 17.5 0.5 0.002 17.5 0.4 2.4 2 1 0 2 2 2 1 zinc-ribbon domain DUF1610 PF07754.6 gi|390938321|ref|YP_006402059.1| - 0.0034 17.4 2.0 0.054 13.6 0.1 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) Fer4_14 PF13394.1 gi|390938321|ref|YP_006402059.1| - 0.0049 16.8 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DNA_ligase_ZBD PF03119.11 gi|390938321|ref|YP_006402059.1| - 0.0066 16.1 0.3 0.17 11.6 0.0 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain VP_N-CPKC PF11475.3 gi|390938321|ref|YP_006402059.1| - 0.014 14.9 1.1 0.24 10.9 0.0 2.5 2 0 0 2 2 2 0 Virion protein N terminal domain OrfB_Zn_ribbon PF07282.6 gi|390938321|ref|YP_006402059.1| - 0.016 14.8 0.1 0.051 13.2 0.0 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.14 gi|390938321|ref|YP_006402059.1| - 0.021 14.3 4.9 0.67 9.5 0.0 3.2 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.2 gi|390938321|ref|YP_006402059.1| - 0.023 14.4 0.0 0.023 14.4 0.0 2.8 3 0 0 3 3 3 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|390938321|ref|YP_006402059.1| - 0.087 12.6 11.4 0.14 11.9 0.1 3.9 4 0 0 4 4 4 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|390938321|ref|YP_006402059.1| - 0.09 12.1 6.1 0.22 10.8 0.0 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding ATP-synt_DE_N PF02823.11 gi|390938321|ref|YP_006402059.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 ATP synthase, Delta/Epsilon chain, beta-sandwich domain zf-ISL3 PF14690.1 gi|390938321|ref|YP_006402059.1| - 0.4 10.7 0.0 0.4 10.7 0.0 3.4 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Pribosyltran_N PF13793.1 gi|390938322|ref|YP_006402060.1| - 7.7e-24 83.6 0.0 2.8e-22 78.6 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|390938322|ref|YP_006402060.1| - 2.2e-12 46.8 3.3 4.6e-12 45.7 0.8 2.6 3 0 0 3 3 3 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|390938322|ref|YP_006402060.1| - 2.7e-11 43.5 0.6 5.4e-11 42.5 0.4 1.5 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|390938322|ref|YP_006402060.1| - 0.00033 19.9 0.1 0.00074 18.7 0.1 1.6 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase CBS PF00571.23 gi|390938322|ref|YP_006402060.1| - 0.0044 16.7 0.0 1.3 8.8 0.0 3.2 2 1 1 3 3 3 1 CBS domain PRTase_2 PF15609.1 gi|390938322|ref|YP_006402060.1| - 0.0081 15.4 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase UPF0020 PF01170.13 gi|390938323|ref|YP_006402061.1| - 3e-23 82.3 0.0 5.4e-23 81.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|390938323|ref|YP_006402061.1| - 3.4e-12 46.4 0.0 9e-12 45.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|390938323|ref|YP_006402061.1| - 5.6e-07 29.2 0.0 0.00027 20.4 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.10 gi|390938323|ref|YP_006402061.1| - 4.5e-06 26.1 0.0 7.8e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.11 gi|390938323|ref|YP_006402061.1| - 0.019 14.0 0.0 0.04 12.9 0.0 1.5 1 1 0 1 1 1 0 N-6 DNA Methylase MethyltransfD12 PF02086.10 gi|390938323|ref|YP_006402061.1| - 0.047 13.1 0.0 2.2 7.6 0.0 2.2 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_15 PF09445.5 gi|390938323|ref|YP_006402061.1| - 0.051 13.1 0.0 0.078 12.5 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Eco57I PF07669.6 gi|390938323|ref|YP_006402061.1| - 0.052 13.8 0.0 0.091 13.1 0.0 1.3 1 0 0 1 1 1 0 Eco57I restriction-modification methylase Lactamase_B_2 PF12706.2 gi|390938324|ref|YP_006402062.1| - 8.9e-30 103.6 0.0 1.1e-29 103.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|390938324|ref|YP_006402062.1| - 8.9e-14 51.5 0.1 1.2e-13 51.2 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|390938324|ref|YP_006402062.1| - 6.5e-11 41.5 0.0 1.2e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease Lactamase_B_3 PF13483.1 gi|390938324|ref|YP_006402062.1| - 0.0043 16.7 0.1 0.0094 15.6 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Rhabdo_matrix PF03397.9 gi|390938324|ref|YP_006402062.1| - 0.075 12.3 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Rhabdovirus matrix protein Mrr_cat PF04471.7 gi|390938325|ref|YP_006402063.1| - 0.00016 21.4 0.0 0.00037 20.2 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease DS PF01916.12 gi|390938326|ref|YP_006402064.1| - 9.3e-84 281.0 0.1 1.2e-83 280.7 0.1 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase DUF1743 PF08489.6 gi|390938327|ref|YP_006402065.1| - 1.4e-33 115.1 0.0 2.2e-33 114.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.6 gi|390938327|ref|YP_006402065.1| - 0.0022 17.6 2.5 0.0047 16.5 1.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|390938327|ref|YP_006402065.1| - 0.0046 16.6 1.2 0.011 15.4 0.8 1.6 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit tRNA_anti-codon PF01336.20 gi|390938327|ref|YP_006402065.1| - 0.019 14.8 0.0 0.36 10.7 0.0 2.3 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain HypA PF01155.14 gi|390938327|ref|YP_006402065.1| - 0.033 13.8 0.8 0.072 12.7 0.6 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|390938327|ref|YP_006402065.1| - 0.27 11.0 3.3 0.24 11.2 0.5 2.0 2 0 0 2 2 2 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|390938327|ref|YP_006402065.1| - 0.3 10.6 3.4 0.69 9.4 2.3 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|390938327|ref|YP_006402065.1| - 2.2 8.3 7.0 8.5 6.5 0.6 2.8 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|390938327|ref|YP_006402065.1| - 3 7.4 6.9 45 3.7 4.8 2.4 1 1 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|390938327|ref|YP_006402065.1| - 5.1 6.6 9.8 0.14 11.6 1.4 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|390938327|ref|YP_006402065.1| - 8.3 6.3 10.3 0.88 9.4 3.6 2.0 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Aminotran_1_2 PF00155.16 gi|390938328|ref|YP_006402066.1| - 3.5e-48 164.3 0.0 4.3e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|390938328|ref|YP_006402066.1| - 0.026 12.8 0.0 0.04 12.1 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme PYC_OADA PF02436.13 gi|390938329|ref|YP_006402067.1| - 1.1e-59 201.1 0.1 2e-59 200.3 0.1 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|390938329|ref|YP_006402067.1| - 5.6e-40 137.4 0.0 7.7e-40 137.0 0.0 1.1 1 0 0 1 1 1 1 HMGL-like TGT PF01702.13 gi|390938329|ref|YP_006402067.1| - 0.0057 15.9 0.0 0.0098 15.1 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase HD_3 PF13023.1 gi|390938330|ref|YP_006402068.1| - 1.6e-18 66.9 0.0 3.1e-18 66.0 0.0 1.5 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|390938330|ref|YP_006402068.1| - 0.00018 21.5 0.4 0.00088 19.2 0.3 2.2 1 1 0 1 1 1 1 HD domain 2-Hacid_dh PF00389.25 gi|390938330|ref|YP_006402068.1| - 0.087 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Peptidase_M55 PF04951.8 gi|390938331|ref|YP_006402069.1| - 1.2e-86 290.1 0.0 1.4e-86 290.0 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Creatininase PF02633.9 gi|390938331|ref|YP_006402069.1| - 0.098 11.7 0.0 0.2 10.7 0.0 1.5 1 0 0 1 1 1 0 Creatinine amidohydrolase Rib_5-P_isom_A PF06026.9 gi|390938332|ref|YP_006402070.1| - 1.7e-42 144.6 0.0 2e-42 144.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DUF457 PF04307.9 gi|390938333|ref|YP_006402071.1| - 3.1e-21 75.3 11.5 4.6e-21 74.7 8.0 1.3 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF212 PF02681.9 gi|390938333|ref|YP_006402071.1| - 0.035 13.8 0.2 0.049 13.3 0.1 1.3 1 0 0 1 1 1 0 Divergent PAP2 family Colicin_V PF02674.11 gi|390938333|ref|YP_006402071.1| - 0.32 10.8 9.1 0.019 14.8 1.7 1.9 1 1 1 2 2 2 0 Colicin V production protein Pox_LP_H2 PF03356.10 gi|390938333|ref|YP_006402071.1| - 2 8.0 3.7 0.71 9.5 0.7 1.6 2 0 0 2 2 2 0 Viral late protein H2 SlyX PF04102.7 gi|390938334|ref|YP_006402072.1| - 2.3e-05 24.6 2.6 3.9e-05 23.9 1.8 1.4 1 0 0 1 1 1 1 SlyX TMF_DNA_bd PF12329.3 gi|390938334|ref|YP_006402072.1| - 0.001 18.8 7.5 0.0016 18.2 5.2 1.2 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|390938334|ref|YP_006402072.1| - 0.0027 17.3 4.5 0.0027 17.3 3.1 1.6 1 1 1 2 2 2 1 IncA protein DUF972 PF06156.8 gi|390938334|ref|YP_006402072.1| - 0.0045 17.3 3.1 0.0076 16.5 2.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF972) Spc7 PF08317.6 gi|390938334|ref|YP_006402072.1| - 0.0049 15.5 1.6 0.007 15.0 1.1 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein Cast PF10174.4 gi|390938334|ref|YP_006402072.1| - 0.0069 14.5 1.7 0.009 14.1 1.2 1.0 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone DivIC PF04977.10 gi|390938334|ref|YP_006402072.1| - 0.015 14.7 1.9 0.032 13.7 0.6 2.0 1 1 1 2 2 2 0 Septum formation initiator Phage_GP20 PF06810.6 gi|390938334|ref|YP_006402072.1| - 0.017 14.5 1.9 0.028 13.8 1.3 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 DUF1664 PF07889.7 gi|390938334|ref|YP_006402072.1| - 0.022 14.5 1.1 0.041 13.6 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) ATG16 PF08614.6 gi|390938334|ref|YP_006402072.1| - 0.026 14.3 5.3 0.039 13.7 3.7 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Cluap1 PF10234.4 gi|390938334|ref|YP_006402072.1| - 0.03 13.5 2.0 0.049 12.8 1.4 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 USP8_interact PF08941.5 gi|390938334|ref|YP_006402072.1| - 0.098 11.9 1.4 0.16 11.2 1.0 1.3 1 0 0 1 1 1 0 USP8 interacting DUF4201 PF13870.1 gi|390938334|ref|YP_006402072.1| - 0.1 12.0 4.6 0.15 11.4 3.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Myosin_tail_1 PF01576.14 gi|390938334|ref|YP_006402072.1| - 0.27 8.9 2.9 0.37 8.4 2.0 1.0 1 0 0 1 1 1 0 Myosin tail Pox_A_type_inc PF04508.7 gi|390938334|ref|YP_006402072.1| - 0.76 9.7 2.5 1.7 8.6 0.1 2.5 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Erp_C PF06780.6 gi|390938334|ref|YP_006402072.1| - 1 9.1 3.9 0.55 10.0 1.3 1.5 2 0 0 2 2 1 0 Erp protein C-terminus AAA_26 PF13500.1 gi|390938335|ref|YP_006402073.1| - 0.00071 19.2 0.0 0.0017 17.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|390938335|ref|YP_006402073.1| - 0.012 15.0 0.1 0.035 13.5 0.1 1.9 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain KTI12 PF08433.5 gi|390938335|ref|YP_006402073.1| - 0.076 12.2 0.0 0.3 10.2 0.0 1.8 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_25 PF13481.1 gi|390938335|ref|YP_006402073.1| - 0.082 12.3 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain IF-2B PF01008.12 gi|390938336|ref|YP_006402074.1| - 7.7e-51 172.7 0.0 1e-50 172.3 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family DEDD_Tnp_IS110 PF01548.12 gi|390938336|ref|YP_006402074.1| - 0.064 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Transposase DUF2407_C PF13373.1 gi|390938336|ref|YP_006402074.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 DUF2407 C-terminal domain IF-2B PF01008.12 gi|390938337|ref|YP_006402075.1| - 1e-87 293.7 0.1 1.2e-87 293.4 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF2797 PF10977.3 gi|390938338|ref|YP_006402076.1| - 0.13 11.8 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2797) DUF59 PF01883.14 gi|390938339|ref|YP_006402077.1| - 2.2e-13 49.9 0.2 2.9e-13 49.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 tRNA-synt_2b PF00587.20 gi|390938340|ref|YP_006402078.1| - 3.1e-32 111.5 0.0 5.1e-32 110.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|390938340|ref|YP_006402078.1| - 1.8e-22 79.3 4.5 3.2e-22 78.6 3.1 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Laminin_II PF06009.7 gi|390938340|ref|YP_006402078.1| - 0.15 11.8 0.7 0.28 10.9 0.5 1.3 1 0 0 1 1 1 0 Laminin Domain II DUF402 PF04167.8 gi|390938341|ref|YP_006402079.1| - 1.7e-16 59.7 0.3 3.1e-16 58.9 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|390938341|ref|YP_006402079.1| - 2.1e-07 30.4 0.0 3.2e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family Sigma70_r4 PF04545.11 gi|390938341|ref|YP_006402079.1| - 2.7 7.3 5.7 8.7 5.7 0.0 3.7 3 1 1 4 4 4 0 Sigma-70, region 4 TrkA_N PF02254.13 gi|390938343|ref|YP_006402081.1| - 0.002 18.1 0.1 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain MS_channel PF00924.13 gi|390938344|ref|YP_006402082.1| - 7.6e-14 51.5 5.3 1e-13 51.1 3.7 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|390938344|ref|YP_006402082.1| - 0.00012 21.6 1.5 0.00012 21.6 1.1 2.7 3 0 0 3 3 3 1 Conserved TM helix Colicin_V PF02674.11 gi|390938344|ref|YP_006402082.1| - 1.7 8.5 11.1 0.19 11.5 1.9 2.2 1 1 1 2 2 2 0 Colicin V production protein DUF2964 PF11177.3 gi|390938344|ref|YP_006402082.1| - 3.4 7.6 9.5 0.8 9.6 3.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) Pox_P21 PF05313.7 gi|390938344|ref|YP_006402082.1| - 8.8 5.5 11.2 17 4.5 7.8 1.5 1 0 0 1 1 1 0 Poxvirus P21 membrane protein MFS_1 PF07690.11 gi|390938345|ref|YP_006402083.1| - 5.4e-10 38.5 29.2 6.8e-10 38.1 20.3 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF4014 PF13198.1 gi|390938345|ref|YP_006402083.1| - 0.057 13.8 2.1 0.11 12.9 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4014) EamA PF00892.15 gi|390938346|ref|YP_006402084.1| - 1.3e-12 47.8 26.3 1.8e-07 31.2 6.3 2.7 2 1 0 2 2 2 2 EamA-like transporter family Band_7 PF01145.20 gi|390938347|ref|YP_006402085.1| - 2.6e-37 128.4 0.7 3.3e-37 128.1 0.5 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|390938347|ref|YP_006402085.1| - 0.0021 17.6 0.1 0.0037 16.8 0.1 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family NfeD PF01957.13 gi|390938348|ref|YP_006402086.1| - 5.1e-19 68.8 4.8 5.1e-19 68.8 3.4 2.3 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|390938348|ref|YP_006402086.1| - 1.7e-05 24.5 0.2 3e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|390938348|ref|YP_006402086.1| - 0.017 13.9 0.3 0.043 12.5 0.1 1.7 2 0 0 2 2 2 0 Serine dehydrogenase proteinase DUF2139 PF09910.4 gi|390938349|ref|YP_006402087.1| - 3.7e-129 430.6 0.0 4.4e-129 430.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) AAA_3 PF07726.6 gi|390938350|ref|YP_006402088.1| - 1.2e-63 212.5 0.1 2e-63 211.8 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|390938350|ref|YP_006402088.1| - 8.7e-18 64.3 0.0 3.6e-17 62.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|390938350|ref|YP_006402088.1| - 5.4e-08 33.1 0.0 1.5e-07 31.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|390938350|ref|YP_006402088.1| - 4.3e-07 29.5 0.1 5.4e-06 25.9 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|390938350|ref|YP_006402088.1| - 7.5e-07 28.2 0.0 7.3e-06 25.0 0.0 2.4 1 1 1 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|390938350|ref|YP_006402088.1| - 4.9e-06 25.8 0.4 0.073 12.2 0.1 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|390938350|ref|YP_006402088.1| - 0.00029 19.9 0.2 0.0027 16.7 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|390938350|ref|YP_006402088.1| - 0.022 14.7 0.0 0.27 11.2 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain DUF4548 PF15081.1 gi|390938350|ref|YP_006402088.1| - 0.096 12.2 0.0 0.24 10.8 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4548) PhoH PF02562.11 gi|390938350|ref|YP_006402088.1| - 0.13 11.4 0.2 0.3 10.2 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein DUF58 PF01882.13 gi|390938351|ref|YP_006402089.1| - 4.6e-15 55.5 0.1 9.3e-15 54.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 Polysacc_synt PF01943.12 gi|390938353|ref|YP_006402091.1| - 0.18 11.0 7.1 0.18 11.0 4.9 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DUF423 PF04241.10 gi|390938353|ref|YP_006402091.1| - 0.19 11.6 2.5 0.23 11.4 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF423) PGPGW PF09656.5 gi|390938353|ref|YP_006402091.1| - 0.24 10.7 4.0 0.8 9.0 2.8 1.9 1 1 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF1469 PF07332.6 gi|390938353|ref|YP_006402091.1| - 0.55 9.9 5.9 0.62 9.8 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF2892 PF11127.3 gi|390938353|ref|YP_006402091.1| - 0.68 9.7 4.1 0.95 9.3 2.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) Cation_efflux PF01545.16 gi|390938353|ref|YP_006402091.1| - 0.93 8.4 6.3 1 8.3 4.4 1.1 1 0 0 1 1 1 0 Cation efflux family DUF4282 PF14110.1 gi|390938353|ref|YP_006402091.1| - 1.2 9.4 6.8 1.3 9.2 4.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF2463 PF09591.5 gi|390938353|ref|YP_006402091.1| - 2.2 7.7 8.5 2.5 7.6 5.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2463) Peptidase_U4 PF03419.8 gi|390938353|ref|YP_006402091.1| - 3.4 6.6 5.6 3.5 6.6 3.9 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA CAAD PF14159.1 gi|390938353|ref|YP_006402091.1| - 3.5 7.3 5.6 3.8 7.2 3.9 1.1 1 0 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF202 PF02656.10 gi|390938353|ref|YP_006402091.1| - 4.1 7.6 8.2 2.3 8.5 2.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF202) DUF983 PF06170.7 gi|390938353|ref|YP_006402091.1| - 5 7.3 5.9 6.3 6.9 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF983) Apq12 PF12716.2 gi|390938353|ref|YP_006402091.1| - 5 6.8 10.6 1.9 8.2 2.8 2.1 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis IncA PF04156.9 gi|390938353|ref|YP_006402091.1| - 6.2 6.3 10.2 7 6.1 7.0 1.0 1 0 0 1 1 1 0 IncA protein Lactamase_B_2 PF12706.2 gi|390938354|ref|YP_006402092.1| - 3.4e-08 33.2 0.2 4.8e-08 32.7 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|390938354|ref|YP_006402092.1| - 4.8e-05 23.1 0.0 0.00011 21.9 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|390938354|ref|YP_006402092.1| - 0.025 14.2 2.5 0.074 12.6 0.3 2.3 2 1 0 2 2 2 0 Metallo-beta-lactamase superfamily DHH PF01368.15 gi|390938354|ref|YP_006402092.1| - 0.46 10.1 3.1 1.6 8.3 0.0 2.3 1 1 1 2 2 2 0 DHH family Pyr_redox_2 PF07992.9 gi|390938355|ref|YP_006402093.1| - 3.9e-29 101.9 1.9 5.7e-29 101.4 1.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|390938355|ref|YP_006402093.1| - 2.8e-18 66.0 2.3 2.4e-15 56.7 0.2 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|390938355|ref|YP_006402093.1| - 2e-08 34.5 1.1 1.2e-05 25.5 0.0 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|390938355|ref|YP_006402093.1| - 3.6e-07 29.0 1.2 0.0027 16.2 0.0 3.0 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.19 gi|390938355|ref|YP_006402093.1| - 5.1e-07 28.9 11.5 0.04 12.8 2.1 4.4 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|390938355|ref|YP_006402093.1| - 1.4e-06 27.6 0.7 0.0047 16.0 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|390938355|ref|YP_006402093.1| - 4.2e-06 25.9 3.1 0.0028 16.6 0.1 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein Pyr_redox_dim PF02852.17 gi|390938355|ref|YP_006402093.1| - 4.5e-06 26.6 0.1 1.6e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_binding_2 PF00890.19 gi|390938355|ref|YP_006402093.1| - 0.0002 20.3 3.4 0.00046 19.1 0.1 2.7 2 1 1 3 3 3 1 FAD binding domain Trp_halogenase PF04820.9 gi|390938355|ref|YP_006402093.1| - 0.00026 19.7 1.0 0.0082 14.8 0.1 2.4 2 0 0 2 2 2 1 Tryptophan halogenase GIDA PF01134.17 gi|390938355|ref|YP_006402093.1| - 0.00034 19.6 7.1 0.025 13.4 0.0 3.6 2 1 2 4 4 4 1 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|390938355|ref|YP_006402093.1| - 0.0043 16.0 0.0 0.11 11.4 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|390938355|ref|YP_006402093.1| - 0.013 15.2 0.7 4.5 7.0 0.0 3.3 3 1 1 4 4 4 0 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|390938355|ref|YP_006402093.1| - 0.058 13.4 0.2 1.5 8.9 0.1 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|390938355|ref|YP_006402093.1| - 0.19 10.7 0.0 0.33 9.9 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase MFS_1 PF07690.11 gi|390938356|ref|YP_006402094.1| - 0.0021 16.8 1.4 0.0023 16.7 1.0 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF1700 PF08006.6 gi|390938356|ref|YP_006402094.1| - 0.51 9.6 3.7 0.57 9.4 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) MFS_1 PF07690.11 gi|390938357|ref|YP_006402095.1| - 7.6e-14 51.1 36.6 1e-13 50.7 25.3 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|390938357|ref|YP_006402095.1| - 0.0023 16.1 9.7 0.0058 14.8 6.7 1.6 1 1 0 1 1 1 1 Transmembrane secretion effector ABC_tran PF00005.22 gi|390938358|ref|YP_006402096.1| - 2.5e-28 99.0 0.0 4.3e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938358|ref|YP_006402096.1| - 1.2e-15 58.2 0.1 7.9e-14 52.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|390938358|ref|YP_006402096.1| - 7.9e-06 26.2 0.0 1.6e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|390938358|ref|YP_006402096.1| - 8e-05 22.0 0.0 0.00016 21.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|390938358|ref|YP_006402096.1| - 0.00072 18.7 0.0 0.013 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.10 gi|390938358|ref|YP_006402096.1| - 0.0014 17.4 0.0 0.0018 17.0 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|390938358|ref|YP_006402096.1| - 0.0053 17.5 0.1 0.013 16.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|390938358|ref|YP_006402096.1| - 0.0058 16.6 0.2 0.026 14.5 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|390938358|ref|YP_006402096.1| - 0.015 14.9 0.0 0.032 13.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|390938358|ref|YP_006402096.1| - 0.02 14.6 0.3 0.08 12.7 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain MukB PF04310.7 gi|390938358|ref|YP_006402096.1| - 0.021 14.1 0.0 0.058 12.7 0.0 1.7 2 0 0 2 2 2 0 MukB N-terminal AAA_22 PF13401.1 gi|390938358|ref|YP_006402096.1| - 0.021 14.9 0.2 0.14 12.2 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|390938358|ref|YP_006402096.1| - 0.024 14.9 0.3 0.049 13.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|390938358|ref|YP_006402096.1| - 0.03 14.5 0.3 0.096 12.8 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|390938358|ref|YP_006402096.1| - 0.03 13.7 0.1 0.049 13.0 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.12 gi|390938358|ref|YP_006402096.1| - 0.032 13.6 0.0 0.47 9.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein ArgK PF03308.11 gi|390938358|ref|YP_006402096.1| - 0.051 12.3 0.1 0.096 11.4 0.1 1.4 1 0 0 1 1 1 0 ArgK protein AAA_23 PF13476.1 gi|390938358|ref|YP_006402096.1| - 0.1 12.9 0.4 0.17 12.2 0.2 1.4 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|390938358|ref|YP_006402096.1| - 0.11 12.4 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|390938358|ref|YP_006402096.1| - 0.13 11.7 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|390938358|ref|YP_006402096.1| - 0.17 11.0 0.0 17 4.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.3 gi|390938358|ref|YP_006402096.1| - 2.9 7.6 6.1 0.64 9.7 0.1 2.7 3 0 0 3 3 2 0 Branched-chain amino acid ATP-binding cassette transporter ABC2_membrane_3 PF12698.2 gi|390938359|ref|YP_006402097.1| - 0.00015 20.8 16.4 0.00015 20.8 11.4 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|390938360|ref|YP_006402098.1| - 0.00019 20.6 22.7 0.00034 19.8 15.7 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|390938360|ref|YP_006402098.1| - 1.5 7.8 30.1 0.19 10.7 12.2 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein CMD PF02627.15 gi|390938361|ref|YP_006402099.1| - 3.6e-19 68.3 0.1 4.6e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family COX7a PF02238.10 gi|390938361|ref|YP_006402099.1| - 0.11 12.1 0.1 0.23 11.1 0.1 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIa Glyco_hydro_1 PF00232.13 gi|390938362|ref|YP_006402100.1| - 5.9e-86 288.4 7.9 5.1e-85 285.3 5.5 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.13 gi|390938362|ref|YP_006402100.1| - 0.00025 20.3 0.1 0.0004 19.6 0.0 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_42 PF02449.10 gi|390938362|ref|YP_006402100.1| - 0.00027 20.1 0.0 0.00058 19.0 0.0 1.5 1 0 0 1 1 1 1 Beta-galactosidase DUF333 PF03891.10 gi|390938362|ref|YP_006402100.1| - 0.14 12.0 0.2 0.33 10.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF333) CBS PF00571.23 gi|390938363|ref|YP_006402101.1| - 1.7e-35 120.4 2.2 8.7e-17 60.6 0.1 2.1 2 0 0 2 2 2 2 CBS domain UPF0066 PF01980.11 gi|390938364|ref|YP_006402102.1| - 1.2e-38 131.7 0.0 1.7e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 MerR-DNA-bind PF09278.6 gi|390938364|ref|YP_006402102.1| - 0.046 14.1 0.0 1.3 9.4 0.0 2.3 2 0 0 2 2 2 0 MerR, DNA binding GalP_UDP_transf PF01087.17 gi|390938365|ref|YP_006402103.1| - 2.5e-26 92.8 0.0 5.6e-26 91.7 0.0 1.6 2 0 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|390938365|ref|YP_006402103.1| - 9.2e-14 51.3 0.0 1.6e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|390938365|ref|YP_006402103.1| - 2.3e-07 31.0 0.1 8.9e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.18 gi|390938365|ref|YP_006402103.1| - 1.9e-05 25.0 0.1 0.0015 19.0 0.0 2.2 2 0 0 2 2 2 1 HIT domain Replicase PF03090.12 gi|390938365|ref|YP_006402103.1| - 0.15 11.8 0.1 0.42 10.4 0.0 1.8 1 1 1 2 2 2 0 Replicase family GHMP_kinases_N PF00288.21 gi|390938366|ref|YP_006402104.1| - 1.1e-14 54.2 0.9 1.1e-14 54.2 0.6 2.5 2 1 0 2 2 2 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.4 gi|390938366|ref|YP_006402104.1| - 6.4e-13 47.7 0.0 1.3e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.8 gi|390938366|ref|YP_006402104.1| - 7.9e-13 48.4 0.1 2.5e-12 46.8 0.0 1.8 1 1 0 1 1 1 1 GHMP kinases C terminal Glyco_hydro_53 PF07745.8 gi|390938366|ref|YP_006402104.1| - 0.22 10.2 0.0 0.29 9.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 53 Epimerase PF01370.16 gi|390938367|ref|YP_006402105.1| - 1e-47 162.5 0.1 1.4e-47 162.1 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|390938367|ref|YP_006402105.1| - 4.2e-20 71.5 0.2 5.1e-20 71.3 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|390938367|ref|YP_006402105.1| - 6.6e-17 61.3 0.0 7.9e-17 61.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|390938367|ref|YP_006402105.1| - 1.5e-16 60.1 0.1 1.6e-15 56.7 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|390938367|ref|YP_006402105.1| - 3.4e-12 45.8 0.0 8.1e-11 41.3 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|390938367|ref|YP_006402105.1| - 3.6e-10 40.1 0.0 6e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|390938367|ref|YP_006402105.1| - 1.7e-06 28.0 0.1 5.4e-06 26.4 0.0 1.8 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|390938367|ref|YP_006402105.1| - 0.0011 18.2 0.3 0.037 13.2 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|390938367|ref|YP_006402105.1| - 0.0019 17.9 0.0 0.0058 16.3 0.0 1.7 2 0 0 2 2 2 1 KR domain Ldh_1_N PF00056.18 gi|390938367|ref|YP_006402105.1| - 0.031 14.1 0.0 0.062 13.1 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|390938367|ref|YP_006402105.1| - 0.089 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase PALP PF00291.20 gi|390938368|ref|YP_006402106.1| - 8.3e-42 143.4 0.0 1.1e-41 143.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme MgtE PF01769.11 gi|390938369|ref|YP_006402107.1| - 2.8e-17 63.2 28.6 2.3e-09 37.6 4.5 2.9 2 1 0 3 3 3 2 Divalent cation transporter Bestrophin PF01062.16 gi|390938369|ref|YP_006402107.1| - 5.9 5.7 8.2 0.2 10.5 0.3 2.3 2 1 1 3 3 3 0 Bestrophin, RFP-TM, chloride channel PhoU PF01895.14 gi|390938370|ref|YP_006402108.1| - 2.1e-05 24.8 0.9 0.33 11.4 0.0 2.7 3 0 0 3 3 3 2 PhoU domain TrkA_C PF02080.16 gi|390938370|ref|YP_006402108.1| - 0.0005 19.5 0.0 0.66 9.6 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU_div PF01865.11 gi|390938370|ref|YP_006402108.1| - 0.0012 18.0 0.5 0.057 12.5 0.1 2.6 2 1 0 2 2 2 1 Protein of unknown function DUF47 Sigma70_r4_2 PF08281.7 gi|390938370|ref|YP_006402108.1| - 0.041 13.3 0.1 2.4 7.6 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 DUF1628 PF07790.6 gi|390938371|ref|YP_006402109.1| - 0.0003 21.4 9.0 0.00079 20.1 6.2 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) AsmA PF05170.9 gi|390938371|ref|YP_006402109.1| - 0.0079 14.8 0.0 0.012 14.3 0.0 1.2 1 0 0 1 1 1 1 AsmA family TPPK_C PF12555.3 gi|390938371|ref|YP_006402109.1| - 0.35 10.6 7.4 0.76 9.5 5.1 1.6 1 1 0 1 1 1 0 Thiamine pyrophosphokinase C terminal PMT PF02366.13 gi|390938374|ref|YP_006402112.1| - 9.9e-09 34.9 11.0 9.9e-09 34.9 7.7 3.0 2 2 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF4307 PF14155.1 gi|390938375|ref|YP_006402113.1| - 0.23 11.2 1.2 5.6 6.7 1.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4307) ABC_tran PF00005.22 gi|390938377|ref|YP_006402115.1| - 1.2e-17 64.5 0.1 3.9e-17 62.8 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|390938377|ref|YP_006402115.1| - 9e-09 35.6 0.3 3.2e-05 24.0 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|390938377|ref|YP_006402115.1| - 0.00013 22.3 0.0 0.00018 21.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|390938377|ref|YP_006402115.1| - 0.00038 20.0 0.6 0.021 14.4 0.1 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|390938377|ref|YP_006402115.1| - 0.00054 19.9 0.0 0.00085 19.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SH3_3 PF08239.6 gi|390938377|ref|YP_006402115.1| - 0.00066 19.8 0.8 0.0061 16.7 0.5 2.4 1 1 0 1 1 1 1 Bacterial SH3 domain AAA_13 PF13166.1 gi|390938377|ref|YP_006402115.1| - 0.00071 18.1 0.0 0.00099 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|390938377|ref|YP_006402115.1| - 0.0015 18.6 0.1 0.0028 17.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|390938377|ref|YP_006402115.1| - 0.006 15.6 0.1 0.018 14.1 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain SH3_1 PF00018.23 gi|390938377|ref|YP_006402115.1| - 0.0097 15.2 0.0 0.14 11.5 0.0 2.2 1 1 1 2 2 2 1 SH3 domain Arch_ATPase PF01637.13 gi|390938377|ref|YP_006402115.1| - 0.01 15.5 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|390938377|ref|YP_006402115.1| - 0.011 15.4 0.1 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|390938377|ref|YP_006402115.1| - 0.011 15.2 0.1 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|390938377|ref|YP_006402115.1| - 0.023 14.4 0.0 0.064 12.9 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|390938377|ref|YP_006402115.1| - 0.024 15.4 0.0 0.042 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|390938377|ref|YP_006402115.1| - 0.035 14.3 0.0 0.082 13.1 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|390938377|ref|YP_006402115.1| - 0.037 13.4 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.9 gi|390938377|ref|YP_006402115.1| - 0.045 12.7 0.1 0.074 11.9 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase RNA_helicase PF00910.17 gi|390938377|ref|YP_006402115.1| - 0.064 13.4 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.1 gi|390938377|ref|YP_006402115.1| - 0.094 12.2 0.0 0.28 10.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|390938377|ref|YP_006402115.1| - 0.096 12.2 0.2 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|390938377|ref|YP_006402115.1| - 0.1 12.9 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|390938377|ref|YP_006402115.1| - 0.19 9.0 0.1 0.25 8.6 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.22 gi|390938378|ref|YP_006402116.1| - 2.3e-09 37.6 0.0 2.6e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.1 gi|390938378|ref|YP_006402116.1| - 0.00049 20.3 0.0 0.00067 19.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|390938378|ref|YP_006402116.1| - 0.00087 18.7 0.1 0.0013 18.2 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SE PF00437.15 gi|390938378|ref|YP_006402116.1| - 0.00093 18.1 0.3 0.0013 17.6 0.2 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|390938378|ref|YP_006402116.1| - 0.0012 19.7 0.3 0.0021 18.8 0.2 1.6 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|390938378|ref|YP_006402116.1| - 0.0022 17.5 0.0 0.0032 16.9 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF87 PF01935.12 gi|390938378|ref|YP_006402116.1| - 0.0024 17.7 0.3 0.0037 17.1 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_28 PF13521.1 gi|390938378|ref|YP_006402116.1| - 0.004 17.1 0.0 0.0075 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|390938378|ref|YP_006402116.1| - 0.0054 16.2 0.0 0.006 16.0 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|390938378|ref|YP_006402116.1| - 0.0089 15.4 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|390938378|ref|YP_006402116.1| - 0.034 14.1 0.4 0.044 13.7 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|390938378|ref|YP_006402116.1| - 0.048 13.0 0.1 0.072 12.5 0.1 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|390938378|ref|YP_006402116.1| - 0.051 13.7 0.0 0.069 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|390938378|ref|YP_006402116.1| - 0.082 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation CobU PF02283.11 gi|390938378|ref|YP_006402116.1| - 0.083 12.2 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase RNA_helicase PF00910.17 gi|390938378|ref|YP_006402116.1| - 0.087 13.0 0.2 1.1 9.4 0.2 2.3 1 1 0 1 1 1 0 RNA helicase AAA_19 PF13245.1 gi|390938378|ref|YP_006402116.1| - 0.098 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Part of AAA domain Sigma54_activat PF00158.21 gi|390938378|ref|YP_006402116.1| - 0.14 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain KaiC PF06745.8 gi|390938378|ref|YP_006402116.1| - 0.15 11.1 0.1 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 KaiC DUF3816 PF12822.2 gi|390938379|ref|YP_006402117.1| - 4.5e-05 23.4 16.6 6.2e-05 22.9 11.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) Nitroreductase PF00881.19 gi|390938380|ref|YP_006402118.1| - 1.8e-32 112.4 0.0 2.3e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|390938380|ref|YP_006402118.1| - 0.15 11.1 0.3 0.69 9.0 0.0 2.0 2 1 0 2 2 2 0 Putative TM nitroreductase PYC_OADA PF02436.13 gi|390938380|ref|YP_006402118.1| - 0.16 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Conserved carboxylase domain Rhomboid PF01694.17 gi|390938381|ref|YP_006402119.1| - 1.2e-32 112.9 18.1 1.2e-32 112.9 12.6 2.0 2 0 0 2 2 2 1 Rhomboid family HTH_33 PF13592.1 gi|390938381|ref|YP_006402119.1| - 0.0007 19.0 0.9 0.0015 18.0 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn helix Alpha-amylase PF00128.19 gi|390938382|ref|YP_006402120.1| - 1.9e-65 221.3 0.0 3.3e-65 220.5 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.11 gi|390938382|ref|YP_006402120.1| - 0.0013 16.6 0.0 0.0019 16.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 70 Cation_efflux PF01545.16 gi|390938383|ref|YP_006402121.1| - 5.1e-56 189.8 6.4 5.7e-56 189.6 4.4 1.0 1 0 0 1 1 1 1 Cation efflux family PAP2 PF01569.16 gi|390938383|ref|YP_006402121.1| - 0.6 9.8 16.9 3.6 7.2 0.1 3.7 2 1 2 4 4 4 0 PAP2 superfamily TBP PF00352.16 gi|390938384|ref|YP_006402122.1| - 6.3e-62 204.9 0.2 2e-31 107.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|390938384|ref|YP_006402122.1| - 4.3e-05 23.4 0.0 0.16 12.0 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) DUF1390 PF07150.6 gi|390938384|ref|YP_006402122.1| - 0.011 15.0 0.0 0.087 12.1 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1390) Spore_YhaL PF14147.1 gi|390938384|ref|YP_006402122.1| - 0.07 12.5 0.5 0.26 10.7 0.1 2.1 3 0 0 3 3 3 0 Sporulation protein YhaL HMA PF00403.21 gi|390938384|ref|YP_006402122.1| - 0.2 11.8 2.1 3.2 7.9 0.3 2.7 3 0 0 3 3 3 0 Heavy-metal-associated domain DUF2070 PF09843.4 gi|390938385|ref|YP_006402123.1| - 1.4e-08 34.4 0.0 2.6e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Gemini_mov PF01708.11 gi|390938385|ref|YP_006402123.1| - 8.9 5.9 10.7 16 5.1 2.2 2.7 2 0 0 2 2 2 0 Geminivirus putative movement protein DUF1029 PF06269.7 gi|390938386|ref|YP_006402124.1| - 7.2 6.7 15.0 6 6.9 2.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1029) ATP_bind_1 PF03029.12 gi|390938387|ref|YP_006402125.1| - 2.4e-44 151.6 0.0 2.8e-44 151.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_24 PF13479.1 gi|390938387|ref|YP_006402125.1| - 5.3e-05 22.8 0.0 0.00014 21.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|390938387|ref|YP_006402125.1| - 5.8e-05 22.5 0.1 1.4 8.3 0.0 3.6 3 1 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.1 gi|390938387|ref|YP_006402125.1| - 0.0005 20.2 0.0 0.00077 19.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|390938387|ref|YP_006402125.1| - 0.0026 17.7 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain cobW PF02492.14 gi|390938387|ref|YP_006402125.1| - 0.0026 17.2 0.0 0.015 14.7 0.0 2.0 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|390938387|ref|YP_006402125.1| - 0.0027 18.5 0.0 0.0054 17.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|390938387|ref|YP_006402125.1| - 0.0082 15.8 0.0 0.11 12.1 0.0 2.1 1 1 0 1 1 1 1 NTPase MMR_HSR1 PF01926.18 gi|390938387|ref|YP_006402125.1| - 0.015 15.2 0.0 0.042 13.8 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|390938387|ref|YP_006402125.1| - 0.025 14.1 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|390938387|ref|YP_006402125.1| - 0.035 13.0 0.1 0.057 12.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.1 gi|390938387|ref|YP_006402125.1| - 0.036 13.5 0.0 0.069 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|390938387|ref|YP_006402125.1| - 0.042 12.6 0.0 0.19 10.4 0.0 2.0 2 0 0 2 2 2 0 ArgK protein Gtr1_RagA PF04670.7 gi|390938387|ref|YP_006402125.1| - 0.042 12.9 0.0 1.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region AAA_19 PF13245.1 gi|390938387|ref|YP_006402125.1| - 0.047 13.4 0.1 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|390938387|ref|YP_006402125.1| - 0.053 13.1 0.0 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain MobB PF03205.9 gi|390938387|ref|YP_006402125.1| - 0.067 12.8 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Ras PF00071.17 gi|390938387|ref|YP_006402125.1| - 0.068 12.5 0.0 6.1 6.2 0.0 2.5 3 0 0 3 3 3 0 Ras family DUF258 PF03193.11 gi|390938387|ref|YP_006402125.1| - 0.079 12.1 0.1 0.77 8.9 0.0 2.5 4 0 0 4 4 3 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|390938387|ref|YP_006402125.1| - 0.082 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.4 gi|390938387|ref|YP_006402125.1| - 0.12 10.8 0.0 0.16 10.4 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein AAA PF00004.24 gi|390938387|ref|YP_006402125.1| - 0.13 12.4 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|390938387|ref|YP_006402125.1| - 0.14 12.4 0.1 0.22 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|390938387|ref|YP_006402125.1| - 0.15 12.3 0.2 0.23 11.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|390938387|ref|YP_006402125.1| - 0.16 11.8 0.1 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DNA_ligase_A_M PF01068.16 gi|390938388|ref|YP_006402126.1| - 4.8e-57 192.6 0.3 6.9e-57 192.0 0.2 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|390938388|ref|YP_006402126.1| - 2.4e-50 170.7 0.1 4.3e-50 169.9 0.1 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|390938388|ref|YP_006402126.1| - 5.2e-28 97.2 0.0 2.1e-27 95.3 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|390938388|ref|YP_006402126.1| - 0.00074 19.1 0.6 0.041 13.5 0.0 2.9 3 0 0 3 3 3 1 DNA ligase OB-like domain Lon_C PF05362.8 gi|390938389|ref|YP_006402127.1| - 5.6e-07 29.0 0.2 1.1e-06 28.1 0.2 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain UDG PF03167.14 gi|390938390|ref|YP_006402128.1| - 1.9e-44 150.8 0.0 2.4e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily GtrA PF04138.9 gi|390938391|ref|YP_006402129.1| - 7.6e-19 67.7 5.5 1.2e-18 67.1 3.8 1.3 1 0 0 1 1 1 1 GtrA-like protein DUF553 PF04473.7 gi|390938394|ref|YP_006402132.1| - 5.2e-21 74.5 2.4 2.4e-20 72.3 0.1 2.6 2 1 0 2 2 2 1 Transglutaminase-like domain SecD-TM1 PF13721.1 gi|390938394|ref|YP_006402132.1| - 0.046 13.9 1.5 0.2 11.9 0.0 2.4 2 0 0 2 2 2 0 SecD export protein N-terminal TM region Transglut_core PF01841.14 gi|390938394|ref|YP_006402132.1| - 0.064 13.4 0.0 0.18 12.0 0.0 1.7 2 0 0 2 2 2 0 Transglutaminase-like superfamily SBP_bac_5 PF00496.17 gi|390938395|ref|YP_006402133.1| - 4.5e-60 203.4 15.8 2.3e-41 141.8 3.9 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Imm28 PF15574.1 gi|390938395|ref|YP_006402133.1| - 0.054 13.0 0.0 0.53 9.8 0.0 2.4 2 0 0 2 2 2 0 Immunity protein 28 Flp_N PF03930.9 gi|390938395|ref|YP_006402133.1| - 0.077 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Recombinase Flp protein N-terminus BPD_transp_1 PF00528.17 gi|390938396|ref|YP_006402134.1| - 4.2e-39 133.9 18.2 4.2e-39 133.9 12.6 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|390938397|ref|YP_006402135.1| - 6.5e-32 110.5 14.7 6.5e-32 110.5 10.2 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|390938397|ref|YP_006402135.1| - 7.7e-05 21.9 0.6 7.7e-05 21.9 0.4 2.8 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C TraQ PF09679.5 gi|390938397|ref|YP_006402135.1| - 0.83 9.6 3.9 1.3 9.0 0.1 2.7 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) ABC_tran PF00005.22 gi|390938398|ref|YP_006402136.1| - 5.7e-26 91.4 0.0 8.1e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|390938398|ref|YP_006402136.1| - 3.7e-22 78.4 0.5 6.6e-22 77.6 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|390938398|ref|YP_006402136.1| - 1.1e-10 41.9 0.2 4.6e-09 36.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|390938398|ref|YP_006402136.1| - 8.8e-06 25.0 0.1 0.0002 20.5 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|390938398|ref|YP_006402136.1| - 4.7e-05 22.7 0.0 0.0001 21.6 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|390938398|ref|YP_006402136.1| - 0.00029 20.9 1.9 0.0085 16.2 1.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|390938398|ref|YP_006402136.1| - 0.0023 17.9 0.1 0.0077 16.2 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|390938398|ref|YP_006402136.1| - 0.0031 17.0 0.0 0.65 9.3 0.0 2.5 1 1 1 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|390938398|ref|YP_006402136.1| - 0.006 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|390938398|ref|YP_006402136.1| - 0.027 14.6 0.1 1.8 8.7 0.0 2.7 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|390938398|ref|YP_006402136.1| - 0.039 13.3 0.1 1.7 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|390938398|ref|YP_006402136.1| - 0.075 11.4 0.0 0.13 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|390938398|ref|YP_006402136.1| - 0.099 12.8 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.12 gi|390938398|ref|YP_006402136.1| - 0.11 12.3 0.1 0.5 10.1 0.0 2.0 2 1 1 3 3 3 0 Domain of unknown function DUF87 ABC_tran PF00005.22 gi|390938399|ref|YP_006402137.1| - 1.2e-35 122.7 0.0 1.6e-35 122.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|390938399|ref|YP_006402137.1| - 2.8e-21 75.6 0.3 5.1e-21 74.7 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|390938399|ref|YP_006402137.1| - 4e-13 49.9 0.4 1.2e-08 35.2 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|390938399|ref|YP_006402137.1| - 2.6e-05 24.3 0.1 9.3e-05 22.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|390938399|ref|YP_006402137.1| - 5.5e-05 22.7 0.2 0.026 13.9 0.0 2.2 1 1 1 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|390938399|ref|YP_006402137.1| - 0.00017 20.9 0.2 0.00067 18.9 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.16 gi|390938399|ref|YP_006402137.1| - 0.003 16.7 0.0 0.0082 15.3 0.0 1.6 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|390938399|ref|YP_006402137.1| - 0.0054 16.6 0.0 0.062 13.2 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.20 gi|390938399|ref|YP_006402137.1| - 0.0076 15.7 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|390938399|ref|YP_006402137.1| - 0.0087 16.0 0.2 0.018 15.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|390938399|ref|YP_006402137.1| - 0.023 13.7 0.1 0.5 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|390938399|ref|YP_006402137.1| - 0.031 14.4 0.0 0.091 12.9 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|390938399|ref|YP_006402137.1| - 0.033 13.3 0.1 0.051 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|390938399|ref|YP_006402137.1| - 0.042 12.3 0.0 0.48 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|390938399|ref|YP_006402137.1| - 0.053 12.9 0.1 1.2 8.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|390938399|ref|YP_006402137.1| - 0.072 12.1 0.4 0.76 8.8 0.1 2.2 2 0 0 2 2 2 0 KaiC AAA_5 PF07728.9 gi|390938399|ref|YP_006402137.1| - 0.099 12.3 0.2 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|390938399|ref|YP_006402137.1| - 0.1 12.8 1.5 0.24 11.7 0.9 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|390938399|ref|YP_006402137.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MFS_1 PF07690.11 gi|390938401|ref|YP_006402139.1| - 7.9e-32 110.3 29.0 7.9e-32 110.3 20.1 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|390938401|ref|YP_006402139.1| - 6.9e-09 34.7 21.2 4.1e-05 22.3 2.1 3.1 3 0 0 3 3 3 2 Sugar (and other) transporter DUF4131 PF13567.1 gi|390938401|ref|YP_006402139.1| - 0.63 9.4 12.9 0.87 8.9 0.4 3.5 2 2 1 3 3 3 0 Domain of unknown function (DUF4131) DUF131 PF01998.12 gi|390938402|ref|YP_006402140.1| - 1.4e-11 43.5 16.4 1.4e-11 43.5 11.4 2.4 1 1 1 2 2 2 1 Protein of unknown function DUF131 zf-LITAF-like PF10601.4 gi|390938402|ref|YP_006402140.1| - 0.14 12.0 3.0 0.52 10.2 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DUF4190 PF13828.1 gi|390938402|ref|YP_006402140.1| - 0.31 10.6 15.6 11 5.6 2.3 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4190) DUF4131 PF13567.1 gi|390938402|ref|YP_006402140.1| - 0.49 9.7 2.2 0.75 9.1 1.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) SUR7 PF06687.7 gi|390938402|ref|YP_006402140.1| - 0.55 9.7 5.9 0.84 9.1 4.1 1.4 1 1 0 1 1 1 0 SUR7/PalI family TctB PF07331.6 gi|390938402|ref|YP_006402140.1| - 0.64 9.6 12.5 8.9 5.9 8.7 2.0 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF4401 PF14351.1 gi|390938402|ref|YP_006402140.1| - 2.2 7.1 12.7 2.5 7.0 8.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) DUF202 PF02656.10 gi|390938402|ref|YP_006402140.1| - 3.2 8.0 8.6 44 4.3 5.9 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Tetraspannin PF00335.15 gi|390938402|ref|YP_006402140.1| - 3.9 6.7 14.4 7.2 5.8 10.0 1.4 1 1 0 1 1 1 0 Tetraspanin family Claudin_2 PF13903.1 gi|390938402|ref|YP_006402140.1| - 5.1 6.7 11.5 33 4.1 8.0 1.9 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF898 PF05987.8 gi|390938402|ref|YP_006402140.1| - 5.7 5.7 9.5 6.4 5.5 6.6 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) COX2_TM PF02790.10 gi|390938402|ref|YP_006402140.1| - 7.5 6.5 7.8 9.5 6.2 1.1 2.2 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane domain DUF131 PF01998.12 gi|390938403|ref|YP_006402141.1| - 2.7e-11 42.6 14.0 9.2e-11 40.9 1.5 2.1 2 0 0 2 2 2 2 Protein of unknown function DUF131 SPC12 PF06645.8 gi|390938403|ref|YP_006402141.1| - 0.032 14.0 0.6 0.032 14.0 0.4 1.8 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Pox_A14 PF05767.7 gi|390938403|ref|YP_006402141.1| - 0.1 12.5 7.8 0.079 12.9 1.5 2.1 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 SMP_2 PF10144.4 gi|390938403|ref|YP_006402141.1| - 0.17 10.9 0.1 0.17 10.9 0.1 1.4 2 0 0 2 2 2 0 Bacterial virulence factor haemolysin DUF3404 PF11884.3 gi|390938403|ref|YP_006402141.1| - 0.23 10.3 0.0 0.23 10.3 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3404) P12 PF12669.2 gi|390938403|ref|YP_006402141.1| - 0.27 11.4 2.0 1.8 8.8 0.1 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family Claudin_2 PF13903.1 gi|390938403|ref|YP_006402141.1| - 0.57 9.8 8.4 1.8 8.2 5.8 1.7 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3273 PF11677.3 gi|390938403|ref|YP_006402141.1| - 0.64 9.2 6.5 1.3 8.2 4.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3273) NfeD PF01957.13 gi|390938403|ref|YP_006402141.1| - 0.67 10.0 6.9 0.87 9.7 4.8 1.2 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF912 PF06024.7 gi|390938403|ref|YP_006402141.1| - 0.7 9.9 4.1 10 6.2 0.0 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF1517 PF07466.6 gi|390938403|ref|YP_006402141.1| - 0.75 8.7 4.9 0.16 10.8 0.9 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1517) DUF4418 PF14387.1 gi|390938403|ref|YP_006402141.1| - 1.7 8.4 7.8 5 6.9 5.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) DUF2583 PF10762.4 gi|390938403|ref|YP_006402141.1| - 2.6 8.2 5.1 1.6 8.9 2.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2583) UbiA PF01040.13 gi|390938403|ref|YP_006402141.1| - 2.8 7.0 8.7 3.5 6.7 6.0 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF2157 PF09925.4 gi|390938403|ref|YP_006402141.1| - 3.5 7.2 7.5 5.1 6.7 5.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF4282 PF14110.1 gi|390938403|ref|YP_006402141.1| - 3.7 7.8 14.4 74 3.6 10.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4282) MerC PF03203.9 gi|390938403|ref|YP_006402141.1| - 5 7.5 9.2 1.4 9.3 1.5 2.0 1 1 1 2 2 2 0 MerC mercury resistance protein HILPDA PF15220.1 gi|390938403|ref|YP_006402141.1| - 6.9 6.7 6.4 0.3 11.0 0.5 1.7 2 0 0 2 2 2 0 Hypoxia-inducible lipid droplet-associated Pyr_redox_2 PF07992.9 gi|390938404|ref|YP_006402142.1| - 7.7e-36 123.8 9.4 1.3e-21 77.3 3.0 3.5 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|390938404|ref|YP_006402142.1| - 1.1e-21 77.0 7.7 5.5e-20 71.5 0.5 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|390938404|ref|YP_006402142.1| - 2.4e-19 69.3 0.1 1.9e-18 66.5 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|390938404|ref|YP_006402142.1| - 2.4e-11 43.1 13.0 0.00011 21.2 0.5 3.5 3 1 1 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|390938404|ref|YP_006402142.1| - 2.2e-10 40.9 0.2 2.7e-06 27.6 0.1 2.5 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|390938404|ref|YP_006402142.1| - 1.5e-06 26.9 9.1 0.00044 18.8 0.1 3.7 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|390938404|ref|YP_006402142.1| - 1.1e-05 24.7 7.7 0.15 11.0 0.1 3.1 2 1 1 3 3 3 2 FAD binding domain 3HCDH_N PF02737.13 gi|390938404|ref|YP_006402142.1| - 1.2e-05 25.1 1.9 0.0071 16.0 0.1 2.6 3 0 0 3 3 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|390938404|ref|YP_006402142.1| - 1.3e-05 24.2 7.6 1.8e-05 23.7 0.3 2.9 2 1 1 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|390938404|ref|YP_006402142.1| - 2.8e-05 23.3 5.0 9.1e-05 21.6 0.5 3.0 2 1 1 3 3 3 1 Thi4 family FAD_binding_2 PF00890.19 gi|390938404|ref|YP_006402142.1| - 0.00012 21.1 1.4 0.00012 21.1 1.0 3.2 2 1 2 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|390938404|ref|YP_006402142.1| - 0.0011 18.1 0.2 0.0011 18.1 0.2 1.6 3 0 0 3 3 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|390938404|ref|YP_006402142.1| - 0.004 17.1 4.2 0.11 12.5 0.3 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|390938404|ref|YP_006402142.1| - 0.0057 16.4 0.0 0.0057 16.4 0.0 3.1 4 0 0 4 4 4 1 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|390938404|ref|YP_006402142.1| - 0.0062 16.7 1.0 0.59 10.4 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|390938404|ref|YP_006402142.1| - 0.02 13.8 4.7 1.7 7.4 0.0 3.1 2 1 1 3 3 3 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|390938404|ref|YP_006402142.1| - 0.026 14.1 0.0 0.053 13.0 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|390938404|ref|YP_006402142.1| - 0.065 12.3 0.0 0.15 11.2 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Spermine_synth PF01564.12 gi|390938404|ref|YP_006402142.1| - 0.097 11.5 0.1 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase PhoU_div PF01865.11 gi|390938404|ref|YP_006402142.1| - 0.13 11.4 0.1 1.2 8.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF47 TrkA_N PF02254.13 gi|390938404|ref|YP_006402142.1| - 0.27 11.2 1.5 0.72 9.8 0.1 2.2 2 0 0 2 2 2 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|390938404|ref|YP_006402142.1| - 0.43 9.9 4.1 4.8 6.5 0.1 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|390938404|ref|YP_006402142.1| - 4.6 5.7 7.2 1.4 7.4 0.1 2.7 2 1 1 3 3 3 0 Tryptophan halogenase GDC-P PF02347.11 gi|390938405|ref|YP_006402143.1| - 6.4e-13 48.1 0.0 2.8e-11 42.7 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|390938405|ref|YP_006402143.1| - 8.7e-08 31.2 0.0 1.8e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|390938405|ref|YP_006402143.1| - 1e-05 24.6 0.0 2e-05 23.7 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|390938405|ref|YP_006402143.1| - 0.0012 18.0 0.0 0.0019 17.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|390938405|ref|YP_006402143.1| - 0.028 12.8 0.0 0.11 10.8 0.0 1.8 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain GDC-P PF02347.11 gi|390938406|ref|YP_006402144.1| - 1.9e-120 402.4 0.0 2.3e-120 402.2 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|390938406|ref|YP_006402144.1| - 0.00059 18.6 0.0 0.0025 16.6 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V 3A PF00803.13 gi|390938406|ref|YP_006402144.1| - 0.0014 17.6 0.0 0.0024 16.9 0.0 1.2 1 0 0 1 1 1 1 3A/RNA2 movement protein family HRDC PF00570.18 gi|390938406|ref|YP_006402144.1| - 0.11 12.2 0.3 0.27 10.9 0.2 1.7 1 0 0 1 1 1 0 HRDC domain GCV_T PF01571.16 gi|390938407|ref|YP_006402145.1| - 4.7e-47 160.0 0.0 6.6e-47 159.6 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|390938407|ref|YP_006402145.1| - 2.7e-22 78.5 0.0 4.8e-22 77.7 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SHMT PF00464.14 gi|390938408|ref|YP_006402146.1| - 1.8e-68 230.7 0.1 2.3e-68 230.4 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|390938408|ref|YP_006402146.1| - 2.8e-11 43.0 0.0 4.2e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|390938408|ref|YP_006402146.1| - 6e-09 35.3 0.0 2.3e-08 33.4 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|390938408|ref|YP_006402146.1| - 7.1e-07 28.2 0.1 1e-06 27.7 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|390938408|ref|YP_006402146.1| - 5.1e-05 22.4 0.4 8.8e-05 21.6 0.3 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|390938408|ref|YP_006402146.1| - 0.00042 18.7 0.3 0.0071 14.6 0.0 2.3 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DUF3469 PF11952.3 gi|390938408|ref|YP_006402146.1| - 0.0042 16.7 0.6 0.043 13.4 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3469) GCV_H PF01597.14 gi|390938409|ref|YP_006402147.1| - 1.9e-40 137.3 0.1 2.3e-40 137.0 0.1 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.1 gi|390938409|ref|YP_006402147.1| - 0.0015 18.2 0.0 0.0021 17.7 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.17 gi|390938409|ref|YP_006402147.1| - 0.02 14.5 1.0 0.024 14.2 0.1 1.5 2 0 0 2 2 2 0 Biotin-requiring enzyme DeoC PF01791.4 gi|390938410|ref|YP_006402148.1| - 3.5e-42 144.3 1.8 3.9e-42 144.1 1.3 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|390938410|ref|YP_006402148.1| - 0.0005 19.1 2.3 0.00056 18.9 0.6 1.7 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase FMN_dh PF01070.13 gi|390938410|ref|YP_006402148.1| - 0.011 14.5 2.1 0.011 14.5 1.5 2.0 1 1 1 2 2 2 0 FMN-dependent dehydrogenase Spermine_synth PF01564.12 gi|390938411|ref|YP_006402149.1| - 6.2e-64 215.2 0.0 8.3e-64 214.8 0.0 1.0 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|390938411|ref|YP_006402149.1| - 8.6e-07 28.9 0.0 1.6e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|390938411|ref|YP_006402149.1| - 6.6e-05 23.3 0.0 0.00017 22.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|390938411|ref|YP_006402149.1| - 0.057 13.9 0.0 0.14 12.7 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|390938411|ref|YP_006402149.1| - 0.069 12.3 0.1 0.11 11.6 0.1 1.4 1 1 0 1 1 1 0 O-methyltransferase MTS PF05175.9 gi|390938411|ref|YP_006402149.1| - 0.1 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF43 PF01861.11 gi|390938411|ref|YP_006402149.1| - 0.1 11.5 0.1 0.53 9.2 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF43 DUF4350 PF14258.1 gi|390938412|ref|YP_006402150.1| - 0.00041 20.4 0.1 0.0038 17.4 0.0 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) DUF4129 PF13559.1 gi|390938413|ref|YP_006402151.1| - 0.016 15.1 0.1 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) DUF1156 PF06634.7 gi|390938414|ref|YP_006402152.1| - 4.9e-21 74.2 0.1 4.9e-21 74.2 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1156) Cons_hypoth95 PF03602.10 gi|390938414|ref|YP_006402152.1| - 0.0003 20.2 0.0 0.00055 19.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_26 PF13659.1 gi|390938414|ref|YP_006402152.1| - 0.0022 18.0 0.1 0.0032 17.4 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain HTH_23 PF13384.1 gi|390938415|ref|YP_006402153.1| - 2.3e-05 23.8 0.1 5.2e-05 22.7 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_7 PF02796.10 gi|390938415|ref|YP_006402153.1| - 0.00018 21.3 0.1 0.00048 19.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase TrmB PF01978.14 gi|390938415|ref|YP_006402153.1| - 0.0064 16.1 1.2 0.019 14.6 0.0 2.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB DUF3878 PF12994.2 gi|390938415|ref|YP_006402153.1| - 0.011 14.9 0.1 0.011 14.8 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3878) HTH_38 PF13936.1 gi|390938415|ref|YP_006402153.1| - 0.016 14.7 0.0 0.031 13.8 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|390938415|ref|YP_006402153.1| - 0.018 15.0 0.0 0.044 13.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF433 PF04255.9 gi|390938415|ref|YP_006402153.1| - 0.09 12.2 0.0 0.44 9.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF433) DUF4098 PF13345.1 gi|390938416|ref|YP_006402154.1| - 0.067 13.1 0.5 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4098) CbiA PF01656.18 gi|390938420|ref|YP_006402158.1| - 1.4e-27 96.4 0.0 2.3e-27 95.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|390938420|ref|YP_006402158.1| - 4.7e-13 48.1 12.7 1.9e-06 27.2 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|390938420|ref|YP_006402158.1| - 1e-10 41.0 11.7 1.9e-05 24.3 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|390938420|ref|YP_006402158.1| - 6.3e-08 32.0 9.8 0.00032 20.4 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|390938420|ref|YP_006402158.1| - 9.3e-08 32.3 39.3 1.9e-05 24.9 11.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|390938420|ref|YP_006402158.1| - 2.4e-07 31.3 6.0 0.0034 18.0 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|390938420|ref|YP_006402158.1| - 1.5e-06 27.9 5.4 2.3e-06 27.3 3.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|390938420|ref|YP_006402158.1| - 2.1e-06 27.9 12.2 0.01 16.0 1.4 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|390938420|ref|YP_006402158.1| - 3.4e-06 26.7 11.2 5.2e-05 22.9 8.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.1 gi|390938420|ref|YP_006402158.1| - 7.2e-05 22.7 0.1 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain Fer4_4 PF12800.2 gi|390938420|ref|YP_006402158.1| - 8.1e-05 22.6 15.9 0.029 14.6 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|390938420|ref|YP_006402158.1| - 0.001 18.9 3.8 0.0017 18.2 2.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|390938420|ref|YP_006402158.1| - 0.0011 19.3 18.6 0.11 13.0 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|390938420|ref|YP_006402158.1| - 0.0027 17.6 11.7 0.14 12.1 9.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_25 PF13481.1 gi|390938420|ref|YP_006402158.1| - 0.0035 16.7 0.0 0.11 11.8 0.0 2.5 2 1 1 3 3 3 1 AAA domain Fer4_15 PF13459.1 gi|390938420|ref|YP_006402158.1| - 0.0052 17.3 4.6 1.5 9.4 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|390938420|ref|YP_006402158.1| - 0.0066 16.7 14.2 0.21 11.9 2.6 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain NAD_binding_10 PF13460.1 gi|390938420|ref|YP_006402158.1| - 0.014 15.4 0.5 0.047 13.7 0.0 1.9 2 0 0 2 2 2 0 NADH(P)-binding MipZ PF09140.6 gi|390938420|ref|YP_006402158.1| - 0.018 14.1 0.0 0.03 13.4 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ ParA PF10609.4 gi|390938420|ref|YP_006402158.1| - 0.03 14.2 0.0 0.064 13.1 0.0 1.5 1 0 0 1 1 1 0 ParA/MinD ATPase like Fer4_NifH PF00142.13 gi|390938420|ref|YP_006402158.1| - 0.036 13.2 0.1 0.14 11.3 0.0 1.8 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.11 gi|390938420|ref|YP_006402158.1| - 0.064 12.4 0.1 0.11 11.6 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein ArsA_ATPase PF02374.10 gi|390938420|ref|YP_006402158.1| - 0.076 12.0 0.3 0.13 11.2 0.2 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase Fer4_18 PF13746.1 gi|390938420|ref|YP_006402158.1| - 0.61 10.5 13.5 2.9 8.3 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain CbiA PF01656.18 gi|390938421|ref|YP_006402159.1| - 3.4e-09 36.4 0.8 4.3e-09 36.0 0.6 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|390938421|ref|YP_006402159.1| - 6.8e-06 25.3 0.2 8.2e-06 25.0 0.1 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|390938421|ref|YP_006402159.1| - 0.00068 19.5 0.0 0.00076 19.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|390938421|ref|YP_006402159.1| - 0.0014 17.7 0.0 0.0017 17.5 0.0 1.1 1 0 0 1 1 1 1 ATPase MipZ IstB_IS21 PF01695.12 gi|390938421|ref|YP_006402159.1| - 0.014 14.7 0.3 0.014 14.7 0.2 1.5 1 1 1 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|390938421|ref|YP_006402159.1| - 0.022 14.1 0.6 0.028 13.8 0.3 1.3 1 1 0 1 1 1 0 AAA domain AAA_26 PF13500.1 gi|390938421|ref|YP_006402159.1| - 0.059 12.9 0.1 0.083 12.4 0.1 1.1 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|390938421|ref|YP_006402159.1| - 0.065 12.4 0.7 0.082 12.1 0.3 1.3 1 1 0 1 1 1 0 PhoH-like protein AAA_16 PF13191.1 gi|390938421|ref|YP_006402159.1| - 0.1 12.6 0.6 0.13 12.2 0.1 1.4 1 1 1 2 2 2 0 AAA ATPase domain Fer4_NifH PF00142.13 gi|390938421|ref|YP_006402159.1| - 0.11 11.6 0.2 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SDF PF00375.13 gi|390938422|ref|YP_006402160.1| - 2.1e-98 329.6 45.2 2.4e-98 329.4 31.3 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family UPF0113 PF03657.8 gi|390938423|ref|YP_006402161.1| - 1.3e-09 37.8 0.2 2.2e-09 37.1 0.1 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0113) Nol1_Nop2_Fmu PF01189.12 gi|390938424|ref|YP_006402162.1| - 8e-42 143.5 0.0 9.7e-42 143.2 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|390938424|ref|YP_006402162.1| - 0.024 14.2 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF72 PF01904.13 gi|390938425|ref|YP_006402163.1| - 2.9e-48 164.6 0.1 3.3e-48 164.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 PHO4 PF01384.15 gi|390938426|ref|YP_006402164.1| - 7.6e-64 215.4 30.1 1.2e-63 214.7 20.8 1.3 1 0 0 1 1 1 1 Phosphate transporter family DUF2244 PF10003.4 gi|390938426|ref|YP_006402164.1| - 2.1 7.7 6.3 0.36 10.2 0.8 2.5 1 1 0 1 1 1 0 Integral membrane protein (DUF2244) Peptidase_M42 PF05343.9 gi|390938427|ref|YP_006402165.1| - 1.4e-105 352.2 0.3 1.6e-105 352.0 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|390938427|ref|YP_006402165.1| - 2.4e-13 49.9 0.1 4.9e-13 49.0 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|390938427|ref|YP_006402165.1| - 0.00042 20.0 0.1 0.0012 18.5 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|390938427|ref|YP_006402165.1| - 0.0012 17.4 0.0 0.01 14.3 0.0 2.0 1 1 1 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) Alk_phosphatase PF00245.15 gi|390938428|ref|YP_006402166.1| - 0.14 10.7 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 Alkaline phosphatase Radical_SAM PF04055.16 gi|390938429|ref|YP_006402167.1| - 2.3e-13 50.6 0.0 7.7e-13 48.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|390938429|ref|YP_006402167.1| - 4.2e-11 43.0 0.4 1.1e-10 41.6 0.2 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|390938429|ref|YP_006402167.1| - 5.7e-07 29.5 0.0 1.6e-06 28.0 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|390938429|ref|YP_006402167.1| - 1.6e-05 25.0 0.0 1.6e-05 25.0 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Sarcoglycan_1 PF04790.8 gi|390938429|ref|YP_006402167.1| - 0.034 13.3 0.0 0.057 12.5 0.0 1.2 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein ThiS PF02597.15 gi|390938430|ref|YP_006402168.1| - 1.2e-11 44.8 0.1 1.6e-11 44.4 0.1 1.2 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|390938430|ref|YP_006402168.1| - 0.088 12.6 0.1 0.12 12.2 0.1 1.3 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I AFOR_C PF01314.13 gi|390938431|ref|YP_006402169.1| - 8.7e-153 508.5 0.0 1.3e-152 507.9 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|390938431|ref|YP_006402169.1| - 1.7e-80 269.1 0.7 6.8e-80 267.1 0.1 2.1 3 0 0 3 3 3 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AAA_3 PF07726.6 gi|390938432|ref|YP_006402170.1| - 4.3e-63 210.7 0.2 1.1e-62 209.4 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|390938432|ref|YP_006402170.1| - 1.4e-16 60.4 0.0 4.1e-16 58.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|390938432|ref|YP_006402170.1| - 1.4e-07 30.6 0.0 0.00011 21.1 0.0 2.2 2 1 0 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|390938432|ref|YP_006402170.1| - 3e-06 27.4 0.0 8.3e-06 26.0 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|390938432|ref|YP_006402170.1| - 3.8e-05 23.2 0.0 9.5e-05 21.9 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|390938432|ref|YP_006402170.1| - 7.3e-05 22.0 1.0 0.25 10.4 0.0 2.7 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|390938432|ref|YP_006402170.1| - 0.00055 19.0 1.4 0.0065 15.5 0.3 2.8 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Fimbrial_PilY2 PF14481.1 gi|390938432|ref|YP_006402170.1| - 0.0077 15.6 0.0 4.3 6.8 0.0 2.7 2 1 0 2 2 2 2 Type 4 fimbrial biogenesis protein PilY2 Mg_chelatase_2 PF13335.1 gi|390938432|ref|YP_006402170.1| - 0.017 15.4 0.0 0.087 13.2 0.0 2.1 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|390938432|ref|YP_006402170.1| - 0.023 14.6 0.2 0.93 9.3 0.0 2.7 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) Njmu-R1 PF15053.1 gi|390938432|ref|YP_006402170.1| - 0.03 13.0 0.0 0.24 10.1 0.0 1.9 2 0 0 2 2 2 0 Mjmu-R1-like protein family AAA_17 PF13207.1 gi|390938432|ref|YP_006402170.1| - 0.09 13.6 0.0 0.19 12.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF4129 PF13559.1 gi|390938433|ref|YP_006402171.1| - 2.4e-06 27.3 0.8 3.5e-06 26.8 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF2540 PF10802.3 gi|390938433|ref|YP_006402171.1| - 0.013 15.1 0.8 0.04 13.5 0.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) DUF4393 PF14337.1 gi|390938433|ref|YP_006402171.1| - 0.037 13.4 0.8 0.077 12.4 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4393) DUF3611 PF12263.3 gi|390938435|ref|YP_006402173.1| - 0.046 13.0 0.5 0.05 12.9 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) PDR_assoc PF08370.6 gi|390938435|ref|YP_006402173.1| - 0.29 10.6 1.2 0.51 9.8 0.1 1.9 2 0 0 2 2 2 0 Plant PDR ABC transporter associated IncA PF04156.9 gi|390938435|ref|YP_006402173.1| - 0.45 10.0 3.8 0.51 9.9 2.6 1.1 1 0 0 1 1 1 0 IncA protein SdpI PF13630.1 gi|390938435|ref|YP_006402173.1| - 1.1 8.9 7.5 1.6 8.4 5.2 1.4 1 1 0 1 1 1 0 SdpI/YhfL protein family DUF2892 PF11127.3 gi|390938435|ref|YP_006402173.1| - 3 7.7 6.2 3.9 7.3 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) zf-DHHC PF01529.15 gi|390938436|ref|YP_006402174.1| - 4.6 6.6 5.9 8.2 5.7 4.1 1.4 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF58 PF01882.13 gi|390938437|ref|YP_006402175.1| - 1.9e-15 56.7 0.0 2.9e-15 56.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF58 Linocin_M18 PF04454.7 gi|390938438|ref|YP_006402176.1| - 7e-52 175.8 0.2 1e-51 175.2 0.1 1.2 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.12 gi|390938438|ref|YP_006402176.1| - 5.8e-10 39.6 0.1 1e-09 38.8 0.1 1.4 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|390938438|ref|YP_006402176.1| - 0.0068 16.6 0.1 0.014 15.5 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Phage_capsid PF05065.8 gi|390938438|ref|YP_006402176.1| - 0.022 13.9 0.3 0.065 12.4 0.1 1.8 2 1 0 2 2 2 0 Phage capsid family Ferritin PF00210.19 gi|390938438|ref|YP_006402176.1| - 0.07 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Ferritin-like domain Rubrerythrin PF02915.12 gi|390938439|ref|YP_006402177.1| - 7.7e-07 29.5 1.3 1.1e-06 28.9 0.9 1.3 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|390938439|ref|YP_006402177.1| - 0.0022 17.7 2.2 0.0039 16.9 1.5 1.4 1 1 0 1 1 1 1 Ferritin-like domain FA_desaturase_2 PF03405.9 gi|390938439|ref|YP_006402177.1| - 0.024 13.4 0.2 3.8 6.1 0.0 2.1 1 1 1 2 2 2 0 Fatty acid desaturase HemX PF04375.9 gi|390938439|ref|YP_006402177.1| - 0.074 11.6 0.2 0.096 11.2 0.1 1.2 1 0 0 1 1 1 0 HemX FCH PF00611.18 gi|390938439|ref|YP_006402177.1| - 0.11 12.6 3.0 0.19 11.9 0.4 2.5 2 1 1 3 3 3 0 Fes/CIP4, and EFC/F-BAR homology domain COQ7 PF03232.8 gi|390938439|ref|YP_006402177.1| - 0.21 11.0 2.0 0.22 10.9 0.6 1.6 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Lactamase_B PF00753.22 gi|390938440|ref|YP_006402178.1| - 7.5e-16 58.3 0.3 1.1e-15 57.7 0.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|390938440|ref|YP_006402178.1| - 0.033 14.1 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 Flavodoxin FMN_red PF03358.10 gi|390938440|ref|YP_006402178.1| - 0.061 12.8 0.0 0.25 10.8 0.0 1.8 2 0 0 2 2 2 0 NADPH-dependent FMN reductase Peripla_BP_6 PF13458.1 gi|390938440|ref|YP_006402178.1| - 0.064 12.5 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein AhpC-TSA PF00578.16 gi|390938441|ref|YP_006402179.1| - 2.3e-35 120.9 0.0 3.1e-35 120.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|390938441|ref|YP_006402179.1| - 4.3e-17 62.0 0.0 5.9e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|390938441|ref|YP_006402179.1| - 3.4e-11 42.6 0.0 7.3e-11 41.5 0.0 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Sel1 PF08238.7 gi|390938441|ref|YP_006402179.1| - 0.0013 19.3 0.2 0.0033 17.9 0.1 1.7 1 0 0 1 1 1 1 Sel1 repeat AhpC-TSA_2 PF13911.1 gi|390938441|ref|YP_006402179.1| - 0.13 12.2 0.0 0.19 11.6 0.0 1.3 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme zf-ribbon_3 PF13248.1 gi|390938442|ref|YP_006402180.1| - 0.0025 16.9 1.0 0.37 10.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TerY-C PF15616.1 gi|390938442|ref|YP_006402180.1| - 0.017 15.0 0.1 3.4 7.6 0.0 2.1 2 0 0 2 2 2 0 TerY-C metal binding domain zf-Di19 PF05605.7 gi|390938442|ref|YP_006402180.1| - 0.052 13.6 0.3 5.5 7.2 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C4_Topoisom PF01396.14 gi|390938442|ref|YP_006402180.1| - 0.06 12.8 2.4 4.8 6.7 0.1 2.9 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger SoxD PF04267.7 gi|390938442|ref|YP_006402180.1| - 0.061 13.1 0.2 0.48 10.2 0.0 2.0 2 0 0 2 2 2 0 Sarcosine oxidase, delta subunit family Fer4_18 PF13746.1 gi|390938442|ref|YP_006402180.1| - 0.061 13.7 0.1 10 6.6 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain zf-FCS PF06467.9 gi|390938442|ref|YP_006402180.1| - 0.066 12.8 0.3 12 5.6 0.0 2.3 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif CpXC PF14353.1 gi|390938442|ref|YP_006402180.1| - 0.1 12.5 0.3 0.75 9.7 0.2 2.0 1 1 0 1 1 1 0 CpXC protein Cys_rich_CPXG PF14255.1 gi|390938442|ref|YP_006402180.1| - 0.41 10.4 1.7 17 5.3 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG Zn_Tnp_IS1 PF03811.8 gi|390938442|ref|YP_006402180.1| - 0.69 9.4 2.3 9.3 5.8 0.0 2.6 3 0 0 3 3 3 0 InsA N-terminal domain HD PF01966.17 gi|390938443|ref|YP_006402181.1| - 1.2e-06 28.5 0.5 4.7e-06 26.6 0.4 2.1 1 1 0 1 1 1 1 HD domain Glycos_transf_2 PF00535.21 gi|390938444|ref|YP_006402182.1| - 2.1e-29 102.3 0.0 4.3e-29 101.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|390938444|ref|YP_006402182.1| - 2.3e-12 47.2 0.0 2.6e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|390938444|ref|YP_006402182.1| - 2.8e-05 23.3 0.0 3.7e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|390938444|ref|YP_006402182.1| - 0.074 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 UPF0542 PF15086.1 gi|390938444|ref|YP_006402182.1| - 0.18 11.5 1.7 0.38 10.4 1.2 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 tRNA-synt_1 PF00133.17 gi|390938445|ref|YP_006402183.1| - 3e-178 593.5 0.1 3.8e-178 593.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|390938445|ref|YP_006402183.1| - 1.4e-39 135.3 0.5 3e-39 134.2 0.3 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|390938445|ref|YP_006402183.1| - 6.1e-22 77.8 0.2 6.2e-07 28.4 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|390938445|ref|YP_006402183.1| - 4.1e-07 29.4 0.1 2.3e-06 27.0 0.0 2.2 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 dCMP_cyt_deam_1 PF00383.17 gi|390938446|ref|YP_006402184.1| - 9.7e-18 63.7 0.2 1.2e-17 63.3 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|390938446|ref|YP_006402184.1| - 6.1e-10 39.1 0.4 9.3e-10 38.5 0.3 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|390938446|ref|YP_006402184.1| - 5.2e-06 25.9 1.8 0.0013 18.1 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases YwqJ-deaminase PF14431.1 gi|390938446|ref|YP_006402184.1| - 0.061 13.1 1.5 6.2 6.7 0.3 2.7 1 1 1 2 2 2 0 YwqJ-like deaminase Methyltransf_23 PF13489.1 gi|390938447|ref|YP_006402185.1| - 7.4e-13 48.5 0.0 9.2e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|390938447|ref|YP_006402185.1| - 2.2e-11 44.1 0.0 3.1e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|390938447|ref|YP_006402185.1| - 2.3e-06 27.9 0.0 1.8e-05 25.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|390938447|ref|YP_006402185.1| - 3e-05 24.5 0.1 0.0003 21.3 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|390938447|ref|YP_006402185.1| - 0.00014 21.8 0.0 0.00026 20.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|390938447|ref|YP_006402185.1| - 0.0016 18.7 0.0 0.0036 17.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|390938447|ref|YP_006402185.1| - 0.0029 17.2 0.0 0.041 13.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain NNMT_PNMT_TEMT PF01234.12 gi|390938447|ref|YP_006402185.1| - 0.067 12.1 0.0 3.2 6.6 0.0 2.2 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_9 PF08003.6 gi|390938447|ref|YP_006402185.1| - 0.092 11.4 0.2 0.49 9.0 0.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) AAA_23 PF13476.1 gi|390938448|ref|YP_006402186.1| - 1.9e-21 77.3 15.9 1.9e-21 77.3 11.0 5.2 1 1 2 3 3 1 1 AAA domain SMC_N PF02463.14 gi|390938448|ref|YP_006402186.1| - 7.1e-10 38.4 14.6 5.8e-06 25.6 0.0 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|390938448|ref|YP_006402186.1| - 9.4e-08 32.3 32.4 2e-07 31.2 5.8 3.6 1 1 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|390938448|ref|YP_006402186.1| - 4.1e-06 25.5 62.6 0.00039 19.0 14.6 5.0 2 1 2 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|390938448|ref|YP_006402186.1| - 0.00033 20.1 0.0 0.00065 19.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|390938448|ref|YP_006402186.1| - 0.00033 20.1 3.6 0.001 18.4 0.0 3.3 4 0 0 4 4 4 1 AAA domain SbcCD_C PF13558.1 gi|390938448|ref|YP_006402186.1| - 0.00053 19.8 0.0 0.0013 18.5 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF869 PF05911.6 gi|390938448|ref|YP_006402186.1| - 0.0014 16.9 21.5 0.0014 16.9 14.9 2.7 2 1 0 2 2 2 1 Plant protein of unknown function (DUF869) Laminin_II PF06009.7 gi|390938448|ref|YP_006402186.1| - 0.0035 17.0 8.6 0.0035 17.0 6.0 4.9 2 2 3 5 5 5 1 Laminin Domain II FtsK_SpoIIIE PF01580.13 gi|390938448|ref|YP_006402186.1| - 0.0085 15.5 16.6 0.051 13.0 0.0 4.2 3 1 0 4 4 4 1 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|390938448|ref|YP_006402186.1| - 0.024 14.3 0.1 0.15 11.8 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|390938448|ref|YP_006402186.1| - 0.033 13.8 0.5 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.1 gi|390938448|ref|YP_006402186.1| - 0.033 14.1 0.0 0.033 14.1 0.0 4.2 3 1 0 3 3 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|390938448|ref|YP_006402186.1| - 0.074 13.3 0.0 0.074 13.3 0.0 5.4 3 2 0 3 3 2 0 ABC transporter DEAD PF00270.24 gi|390938448|ref|YP_006402186.1| - 0.1 12.0 1.8 1.7 8.1 0.1 3.4 3 1 0 3 3 3 0 DEAD/DEAH box helicase DUF4200 PF13863.1 gi|390938448|ref|YP_006402186.1| - 0.11 12.4 87.4 0.19 11.6 9.8 4.8 3 1 0 4 4 4 0 Domain of unknown function (DUF4200) Reo_sigmaC PF04582.7 gi|390938448|ref|YP_006402186.1| - 0.11 11.6 12.6 1.8 7.6 0.6 4.0 2 2 2 4 4 4 0 Reovirus sigma C capsid protein AAA_22 PF13401.1 gi|390938448|ref|YP_006402186.1| - 0.13 12.3 0.0 0.13 12.3 0.0 5.2 4 1 1 6 6 6 0 AAA domain APG6 PF04111.7 gi|390938448|ref|YP_006402186.1| - 0.14 11.1 77.5 0.36 9.8 8.7 4.3 2 2 2 4 4 4 0 Autophagy protein Apg6 MCPsignal PF00015.16 gi|390938448|ref|YP_006402186.1| - 0.33 10.4 22.0 0.13 11.7 1.7 3.6 2 2 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Baculo_PEP_C PF04513.7 gi|390938448|ref|YP_006402186.1| - 0.42 10.4 22.6 0.39 10.5 0.5 5.0 2 2 4 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus ResIII PF04851.10 gi|390938448|ref|YP_006402186.1| - 0.45 10.3 0.0 0.45 10.3 0.0 4.4 3 1 2 5 5 5 0 Type III restriction enzyme, res subunit PspA_IM30 PF04012.7 gi|390938448|ref|YP_006402186.1| - 0.58 9.4 49.6 0.022 14.1 4.3 5.0 1 1 3 5 5 5 0 PspA/IM30 family WXG100 PF06013.7 gi|390938448|ref|YP_006402186.1| - 0.94 9.5 10.8 14 5.7 0.0 5.9 2 2 3 6 6 6 0 Proteins of 100 residues with WXG DASH_Dam1 PF08653.5 gi|390938448|ref|YP_006402186.1| - 2.3 8.0 5.0 25 4.7 0.2 4.0 4 0 0 4 4 2 0 DASH complex subunit Dam1 NPV_P10 PF05531.7 gi|390938448|ref|YP_006402186.1| - 5.2 7.3 28.1 13 6.1 0.4 6.4 2 2 4 6 6 6 0 Nucleopolyhedrovirus P10 protein TraF_2 PF13729.1 gi|390938448|ref|YP_006402186.1| - 7.3 5.2 7.7 1.3 7.7 1.1 2.8 2 1 1 3 3 3 0 F plasmid transfer operon, TraF, protein Spc7 PF08317.6 gi|390938448|ref|YP_006402186.1| - 8.7 4.9 72.8 0.16 10.6 10.4 4.6 1 1 3 4 4 4 0 Spc7 kinetochore protein AAA_10 PF12846.2 gi|390938449|ref|YP_006402187.1| - 1.1e-17 64.4 0.1 6.2e-16 58.7 0.1 2.6 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|390938449|ref|YP_006402187.1| - 9.3e-16 58.3 3.6 1.3e-12 48.0 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|390938449|ref|YP_006402187.1| - 5.3e-06 26.0 0.0 0.00071 19.1 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|390938449|ref|YP_006402187.1| - 8.5e-06 24.6 0.0 9.4e-05 21.1 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF552 PF04472.7 gi|390938449|ref|YP_006402187.1| - 0.0024 17.7 0.3 0.0071 16.2 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF552) PduV-EutP PF10662.4 gi|390938449|ref|YP_006402187.1| - 0.0063 16.0 0.3 0.095 12.1 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.1 gi|390938449|ref|YP_006402187.1| - 0.015 15.3 0.0 0.046 13.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|390938449|ref|YP_006402187.1| - 0.03 13.2 0.0 0.053 12.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Metallophos_2 PF12850.2 gi|390938451|ref|YP_006402189.1| - 4.7e-10 39.5 0.0 1.2e-09 38.2 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|390938451|ref|YP_006402189.1| - 1.2e-09 37.9 1.8 2.6e-09 36.7 1.2 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PALP PF00291.20 gi|390938452|ref|YP_006402190.1| - 1.5e-68 231.2 0.0 1.8e-68 231.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PfkB PF00294.19 gi|390938453|ref|YP_006402191.1| - 5.4e-55 186.6 0.1 6.2e-55 186.4 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|390938453|ref|YP_006402191.1| - 1.4e-05 24.4 0.0 1.9e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DeoC PF01791.4 gi|390938454|ref|YP_006402192.1| - 2e-30 105.8 0.0 2.4e-30 105.6 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase Sm_multidrug_ex PF06695.6 gi|390938455|ref|YP_006402193.1| - 6.7e-26 90.8 1.7 9e-26 90.4 1.2 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein Herpes_US9 PF06072.6 gi|390938455|ref|YP_006402193.1| - 0.29 10.9 5.3 3.7 7.4 0.0 2.9 3 0 0 3 3 3 0 Alphaherpesvirus tegument protein US9 Bmp PF02608.9 gi|390938456|ref|YP_006402194.1| - 1.4e-32 112.6 0.4 2.4e-32 111.9 0.3 1.2 1 0 0 1 1 1 1 Basic membrane protein Peripla_BP_6 PF13458.1 gi|390938456|ref|YP_006402194.1| - 0.00081 18.8 1.6 0.0012 18.3 0.2 1.8 1 1 0 2 2 2 1 Periplasmic binding protein Hpr_kinase_N PF02603.11 gi|390938456|ref|YP_006402194.1| - 0.14 11.8 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 HPr Serine kinase N terminus ABC_tran PF00005.22 gi|390938457|ref|YP_006402195.1| - 3.6e-39 134.1 0.1 6.6e-29 100.9 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|390938457|ref|YP_006402195.1| - 1.5e-06 28.4 0.1 1.8e-05 24.8 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|390938457|ref|YP_006402195.1| - 0.00014 21.3 0.0 0.002 17.6 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain ArgK PF03308.11 gi|390938457|ref|YP_006402195.1| - 0.0064 15.3 0.7 1.6 7.3 0.5 2.4 2 0 0 2 2 2 2 ArgK protein AAA_23 PF13476.1 gi|390938457|ref|YP_006402195.1| - 0.0065 16.8 0.3 0.017 15.4 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|390938457|ref|YP_006402195.1| - 0.01 15.3 4.1 7.6 5.8 0.0 3.7 4 0 0 4 4 4 0 AAA-like domain AAA_30 PF13604.1 gi|390938457|ref|YP_006402195.1| - 0.01 15.4 0.7 7.5 6.0 0.0 3.2 4 0 0 4 4 4 0 AAA domain UPF0079 PF02367.12 gi|390938457|ref|YP_006402195.1| - 0.014 15.0 0.1 0.41 10.2 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|390938457|ref|YP_006402195.1| - 0.027 13.6 0.4 0.053 12.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DUF815 PF05673.8 gi|390938457|ref|YP_006402195.1| - 0.034 13.0 0.0 2 7.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|390938457|ref|YP_006402195.1| - 0.062 13.4 0.2 0.68 10.0 0.1 2.5 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|390938457|ref|YP_006402195.1| - 0.073 12.2 0.2 3.9 6.6 0.0 3.0 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain DUF4339 PF14237.1 gi|390938457|ref|YP_006402195.1| - 0.11 12.1 0.1 4.3 6.9 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4339) Gtr1_RagA PF04670.7 gi|390938457|ref|YP_006402195.1| - 0.12 11.4 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_25 PF13481.1 gi|390938457|ref|YP_006402195.1| - 0.13 11.7 0.0 0.56 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.11 gi|390938458|ref|YP_006402196.1| - 2.5e-22 79.1 32.4 2.5e-22 79.1 22.5 2.6 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component GNVR PF13807.1 gi|390938458|ref|YP_006402196.1| - 5.9 6.7 9.3 8.3 6.2 0.2 3.7 3 0 0 3 3 3 0 G-rich domain on putative tyrosine kinase BPD_transp_2 PF02653.11 gi|390938459|ref|YP_006402197.1| - 4e-19 68.6 35.8 5e-19 68.3 24.8 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component tRNA-synt_1f PF01921.13 gi|390938460|ref|YP_006402198.1| - 5.8e-90 301.5 0.2 7e-90 301.2 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) TF_Zn_Ribbon PF08271.7 gi|390938460|ref|YP_006402198.1| - 0.097 12.0 3.4 0.31 10.3 2.4 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|390938460|ref|YP_006402198.1| - 0.14 11.9 0.9 0.29 10.9 0.6 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|390938460|ref|YP_006402198.1| - 0.66 9.8 2.7 9.1 6.1 2.3 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain MFS_1 PF07690.11 gi|390938461|ref|YP_006402199.1| - 3.1e-25 88.6 37.2 8.9e-13 47.6 10.9 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily tRNA-synt_1 PF00133.17 gi|390938462|ref|YP_006402200.1| - 1.9e-49 168.1 0.0 2.4e-41 141.4 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|390938462|ref|YP_006402200.1| - 2.6e-19 69.1 4.6 4.9e-11 41.9 0.1 4.1 4 0 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|390938462|ref|YP_006402200.1| - 7.2e-16 58.3 0.0 1.4e-15 57.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|390938462|ref|YP_006402200.1| - 1.7e-07 30.7 0.2 0.0064 15.6 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|390938462|ref|YP_006402200.1| - 0.00079 18.2 0.0 0.0025 16.5 0.0 1.9 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|390938462|ref|YP_006402200.1| - 0.0014 17.5 0.0 0.026 13.3 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (R) Amidohydro_4 PF13147.1 gi|390938463|ref|YP_006402201.1| - 2.2e-21 77.1 0.0 3.4e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|390938463|ref|YP_006402201.1| - 6.7e-14 52.2 0.0 7.5e-13 48.8 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|390938463|ref|YP_006402201.1| - 2.5e-12 46.4 0.6 7.3e-12 44.9 0.4 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|390938463|ref|YP_006402201.1| - 1.3e-07 31.2 0.1 0.00017 20.9 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family MarC PF01914.12 gi|390938464|ref|YP_006402202.1| - 5e-45 153.1 20.5 5.9e-45 152.8 14.2 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.13 gi|390938464|ref|YP_006402202.1| - 0.0014 17.9 10.5 0.0044 16.3 7.3 1.7 1 1 0 1 1 1 1 LysE type translocator DUF3216 PF11505.3 gi|390938464|ref|YP_006402202.1| - 0.12 12.1 0.1 0.37 10.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3216) Cation_efflux PF01545.16 gi|390938465|ref|YP_006402203.1| - 9e-27 93.8 5.1 1.1e-26 93.6 3.6 1.0 1 0 0 1 1 1 1 Cation efflux family Fer4_13 PF13370.1 gi|390938466|ref|YP_006402204.1| - 1.8e-19 69.8 3.3 2.1e-19 69.6 2.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|390938466|ref|YP_006402204.1| - 4.8e-17 62.2 3.1 5.4e-17 62.1 2.1 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|390938466|ref|YP_006402204.1| - 0.00011 22.4 1.5 0.00015 21.9 1.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|390938466|ref|YP_006402204.1| - 0.0055 16.2 5.5 0.045 13.3 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|390938466|ref|YP_006402204.1| - 0.0071 16.1 6.1 0.015 15.1 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|390938466|ref|YP_006402204.1| - 0.0082 16.4 0.3 0.0082 16.4 0.2 2.3 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|390938466|ref|YP_006402204.1| - 0.0096 16.2 2.4 0.034 14.5 1.7 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|390938466|ref|YP_006402204.1| - 0.077 12.8 3.4 0.19 11.5 2.4 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|390938466|ref|YP_006402204.1| - 0.44 10.3 3.3 1.4 8.8 2.3 1.9 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_21 PF14697.1 gi|390938466|ref|YP_006402204.1| - 2.6 7.9 6.6 1.9 8.3 1.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|390938466|ref|YP_006402204.1| - 6.3 6.9 6.5 1 9.4 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Peptidase_M20 PF01546.23 gi|390938467|ref|YP_006402205.1| - 4.3e-40 137.2 0.0 5.3e-40 136.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|390938467|ref|YP_006402205.1| - 1e-20 73.5 0.0 1.5e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|390938467|ref|YP_006402205.1| - 0.12 12.0 0.0 0.34 10.6 0.0 1.7 2 0 0 2 2 2 0 Peptidase family M28 DUF4652 PF15525.1 gi|390938469|ref|YP_006402207.1| - 0.078 12.4 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4652) Inositol_P PF00459.20 gi|390938470|ref|YP_006402208.1| - 6.1e-13 48.6 0.0 8.4e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|390938470|ref|YP_006402208.1| - 1e-07 31.1 0.0 1.4e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Peptidase_M24 PF00557.19 gi|390938471|ref|YP_006402209.1| - 1.6e-55 187.9 0.0 2e-55 187.5 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|390938471|ref|YP_006402209.1| - 4.1e-09 37.0 0.0 7e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF1194 PF06707.6 gi|390938471|ref|YP_006402209.1| - 0.0082 15.1 0.0 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1194) TF_Zn_Ribbon PF08271.7 gi|390938472|ref|YP_006402210.1| - 0.044 13.1 0.8 0.12 11.7 0.6 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Acetone_carb_G PF08882.6 gi|390938472|ref|YP_006402210.1| - 0.059 13.4 0.0 0.076 13.0 0.0 1.2 1 0 0 1 1 1 0 Acetone carboxylase gamma subunit C1_3 PF07649.7 gi|390938472|ref|YP_006402210.1| - 0.063 13.3 0.1 0.092 12.8 0.1 1.3 1 0 0 1 1 1 0 C1-like domain Aminotran_5 PF00266.14 gi|390938474|ref|YP_006402212.1| - 2.2e-37 128.6 0.0 2.6e-37 128.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|390938474|ref|YP_006402212.1| - 2.1e-06 26.9 0.0 3.1e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.11 gi|390938474|ref|YP_006402212.1| - 0.00097 17.9 0.0 0.0015 17.3 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Pyridoxal_deC PF00282.14 gi|390938474|ref|YP_006402212.1| - 0.16 10.3 0.0 0.27 9.6 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain TRAPP PF04051.11 gi|390938475|ref|YP_006402213.1| - 0.1 12.1 0.1 0.99 8.9 0.0 2.1 1 1 0 1 1 1 0 Transport protein particle (TRAPP) component DUF2100 PF09873.4 gi|390938476|ref|YP_006402214.1| - 0.0078 15.7 0.1 0.0089 15.5 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2100) Clp1 PF06807.9 gi|390938476|ref|YP_006402214.1| - 0.04 13.6 0.0 0.1 12.3 0.0 1.7 2 0 0 2 2 2 0 Pre-mRNA cleavage complex II protein Clp1 HD PF01966.17 gi|390938479|ref|YP_006402217.1| - 2e-10 40.7 0.3 4.6e-10 39.5 0.2 1.6 1 0 0 1 1 1 1 HD domain HTH_IclR PF09339.5 gi|390938480|ref|YP_006402218.1| - 2.5e-08 33.3 0.0 3.3e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|390938480|ref|YP_006402218.1| - 1.7e-05 24.0 0.0 2.5e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|390938480|ref|YP_006402218.1| - 0.00033 20.2 0.0 0.00041 19.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FaeA PF04703.7 gi|390938480|ref|YP_006402218.1| - 0.00035 20.6 0.0 0.00042 20.4 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_20 PF12840.2 gi|390938480|ref|YP_006402218.1| - 0.00061 19.5 0.0 0.00072 19.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|390938480|ref|YP_006402218.1| - 0.00062 19.6 0.1 0.00067 19.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|390938480|ref|YP_006402218.1| - 0.0011 18.5 0.0 0.0013 18.3 0.0 1.1 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|390938480|ref|YP_006402218.1| - 0.0012 18.2 0.0 0.0022 17.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|390938480|ref|YP_006402218.1| - 0.0013 18.3 0.0 0.0017 17.9 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|390938480|ref|YP_006402218.1| - 0.0014 18.2 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|390938480|ref|YP_006402218.1| - 0.0016 18.5 0.0 0.0019 18.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|390938480|ref|YP_006402218.1| - 0.0018 17.6 0.1 0.002 17.4 0.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Crp_2 PF13545.1 gi|390938480|ref|YP_006402218.1| - 0.0047 16.6 0.0 0.0055 16.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_12 PF08461.5 gi|390938480|ref|YP_006402218.1| - 0.0049 16.5 0.1 0.0064 16.2 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain DUF2336 PF10098.4 gi|390938480|ref|YP_006402218.1| - 0.006 15.8 0.0 0.0065 15.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2336) LexA_DNA_bind PF01726.11 gi|390938480|ref|YP_006402218.1| - 0.0065 16.0 0.1 0.0086 15.6 0.0 1.1 1 0 0 1 1 1 1 LexA DNA binding domain HTH_23 PF13384.1 gi|390938480|ref|YP_006402218.1| - 0.017 14.7 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|390938480|ref|YP_006402218.1| - 0.02 14.4 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|390938480|ref|YP_006402218.1| - 0.02 14.0 0.1 0.041 13.0 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Sulfolobus_pRN PF05584.6 gi|390938480|ref|YP_006402218.1| - 0.022 14.7 0.1 0.023 14.6 0.1 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein EAP30 PF04157.11 gi|390938480|ref|YP_006402218.1| - 0.029 13.5 0.0 0.031 13.4 0.0 1.0 1 0 0 1 1 1 0 EAP30/Vps36 family DUF2089 PF09862.4 gi|390938480|ref|YP_006402218.1| - 0.034 13.9 0.1 0.06 13.1 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) HTH_DeoR PF08220.7 gi|390938480|ref|YP_006402218.1| - 0.073 12.6 0.0 0.088 12.3 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|390938480|ref|YP_006402218.1| - 0.076 12.5 0.1 0.093 12.2 0.0 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_28 PF13518.1 gi|390938480|ref|YP_006402218.1| - 0.078 13.0 0.0 0.11 12.5 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|390938480|ref|YP_006402218.1| - 0.082 12.3 0.1 0.1 12.0 0.1 1.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family z-alpha PF02295.12 gi|390938480|ref|YP_006402218.1| - 0.1 12.3 0.1 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain CTP_transf_2 PF01467.21 gi|390938481|ref|YP_006402219.1| - 2.1e-09 37.6 0.0 5.1e-09 36.3 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase HIGH_NTase1 PF05636.6 gi|390938481|ref|YP_006402219.1| - 0.035 13.1 0.0 0.45 9.4 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase CxxCxxCC PF03692.10 gi|390938482|ref|YP_006402220.1| - 1.1e-07 32.2 0.0 2.1e-07 31.3 0.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain BPL_LplA_LipB PF03099.14 gi|390938483|ref|YP_006402221.1| - 2.6e-16 59.7 0.1 4e-16 59.1 0.1 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|390938483|ref|YP_006402221.1| - 3.2e-08 33.1 0.1 7.1e-08 32.0 0.1 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain PmbA_TldD PF01523.11 gi|390938484|ref|YP_006402222.1| - 6.8e-51 173.2 0.0 8.2e-51 173.0 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|390938485|ref|YP_006402223.1| - 3.4e-68 230.0 0.3 4.2e-68 229.7 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DEAD PF00270.24 gi|390938486|ref|YP_006402224.1| - 1.9e-24 86.0 0.0 3.3e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|390938486|ref|YP_006402224.1| - 1.9e-14 54.0 0.7 4.6e-14 52.7 0.5 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|390938486|ref|YP_006402224.1| - 2.4e-14 52.9 0.0 2.1e-13 49.9 0.0 2.5 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|390938486|ref|YP_006402224.1| - 2.2e-05 24.4 0.0 7.3e-05 22.6 0.0 1.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|390938486|ref|YP_006402224.1| - 0.064 13.0 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain Flavi_DEAD PF07652.9 gi|390938486|ref|YP_006402224.1| - 0.15 11.8 0.0 0.47 10.2 0.0 1.9 2 0 0 2 2 2 0 Flavivirus DEAD domain UvrD-helicase PF00580.16 gi|390938486|ref|YP_006402224.1| - 0.36 10.0 0.0 0.59 9.3 0.0 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain ABC_tran PF00005.22 gi|390938488|ref|YP_006402226.1| - 1.8e-42 144.9 0.0 3.9e-20 72.5 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|390938488|ref|YP_006402226.1| - 1.3e-29 104.1 0.7 2.5e-09 37.4 0.0 4.2 3 1 1 4 4 4 4 AAA domain SMC_N PF02463.14 gi|390938488|ref|YP_006402226.1| - 1.2e-11 44.2 2.5 0.084 12.0 0.0 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|390938488|ref|YP_006402226.1| - 3.3e-11 43.8 0.8 3.7e-05 24.1 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|390938488|ref|YP_006402226.1| - 4.7e-11 42.0 2.2 9.5e-05 21.8 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|390938488|ref|YP_006402226.1| - 3.4e-09 36.2 0.0 0.059 12.4 0.0 4.1 4 0 0 4 4 4 2 AAA ATPase domain AAA_17 PF13207.1 gi|390938488|ref|YP_006402226.1| - 2.7e-08 34.6 6.7 8.6e-05 23.3 1.5 2.9 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|390938488|ref|YP_006402226.1| - 3.1e-07 30.5 2.7 0.00025 21.0 0.0 2.9 3 1 0 3 3 3 2 AAA ATPase domain AAA_25 PF13481.1 gi|390938488|ref|YP_006402226.1| - 4.3e-07 29.5 2.6 0.013 14.8 0.0 3.6 3 1 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|390938488|ref|YP_006402226.1| - 7.2e-07 29.4 6.9 0.0025 17.9 0.1 3.9 3 1 0 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|390938488|ref|YP_006402226.1| - 7.8e-07 29.4 2.2 0.00079 19.7 0.0 3.2 3 1 0 3 3 2 1 AAA domain AAA_10 PF12846.2 gi|390938488|ref|YP_006402226.1| - 9.1e-07 28.5 5.2 0.06 12.7 0.2 3.3 3 0 0 3 3 3 3 AAA-like domain AAA_30 PF13604.1 gi|390938488|ref|YP_006402226.1| - 1.3e-06 28.1 1.5 0.046 13.3 0.0 3.6 4 0 0 4 4 4 2 AAA domain AAA_19 PF13245.1 gi|390938488|ref|YP_006402226.1| - 2.2e-06 27.3 7.0 0.00055 19.6 0.2 3.8 5 0 0 5 5 3 2 Part of AAA domain NTPase_1 PF03266.10 gi|390938488|ref|YP_006402226.1| - 2.8e-06 27.1 6.1 0.032 13.9 0.2 3.9 4 0 0 4 4 4 2 NTPase NACHT PF05729.7 gi|390938488|ref|YP_006402226.1| - 3.6e-06 26.7 0.9 0.01 15.4 0.2 2.7 3 0 0 3 3 2 2 NACHT domain T2SE PF00437.15 gi|390938488|ref|YP_006402226.1| - 7.5e-06 25.0 0.2 0.0029 16.5 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein UPF0079 PF02367.12 gi|390938488|ref|YP_006402226.1| - 1.3e-05 24.8 1.8 0.0054 16.3 0.1 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ArgK PF03308.11 gi|390938488|ref|YP_006402226.1| - 1.8e-05 23.6 0.9 0.042 12.6 0.0 2.4 2 0 0 2 2 2 2 ArgK protein DUF258 PF03193.11 gi|390938488|ref|YP_006402226.1| - 2e-05 23.8 0.3 0.1 11.7 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA PF00004.24 gi|390938488|ref|YP_006402226.1| - 3.6e-05 23.9 4.9 0.019 15.1 0.8 3.8 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|390938488|ref|YP_006402226.1| - 7.1e-05 22.0 0.9 0.006 15.7 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|390938488|ref|YP_006402226.1| - 0.00013 21.8 1.1 0.073 12.9 0.1 3.1 3 0 0 3 3 3 1 AAA domain AAA_28 PF13521.1 gi|390938488|ref|YP_006402226.1| - 0.00016 21.6 3.4 0.041 13.8 0.7 3.0 3 0 0 3 3 3 1 AAA domain PRK PF00485.13 gi|390938488|ref|YP_006402226.1| - 0.00016 21.2 0.5 0.031 13.8 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|390938488|ref|YP_006402226.1| - 0.00033 20.8 0.1 0.21 11.8 0.0 2.4 2 0 0 2 2 2 1 RNA helicase SbcCD_C PF13558.1 gi|390938488|ref|YP_006402226.1| - 0.00036 20.3 0.3 0.096 12.6 0.0 2.8 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.7 gi|390938488|ref|YP_006402226.1| - 0.0005 19.2 2.2 0.41 9.7 0.1 3.2 3 0 0 3 3 3 1 Zeta toxin MutS_V PF00488.16 gi|390938488|ref|YP_006402226.1| - 0.00051 19.5 0.0 0.93 8.8 0.0 2.4 2 0 0 2 2 2 2 MutS domain V AAA_33 PF13671.1 gi|390938488|ref|YP_006402226.1| - 0.00062 19.6 5.2 0.013 15.3 0.4 3.2 3 0 0 3 3 3 1 AAA domain IstB_IS21 PF01695.12 gi|390938488|ref|YP_006402226.1| - 0.00087 18.7 3.5 0.011 15.1 0.0 2.7 3 0 0 3 3 2 1 IstB-like ATP binding protein APS_kinase PF01583.15 gi|390938488|ref|YP_006402226.1| - 0.00091 18.9 1.6 0.03 13.9 0.1 2.4 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_5 PF07728.9 gi|390938488|ref|YP_006402226.1| - 0.00091 18.9 3.4 0.15 11.7 0.2 3.4 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|390938488|ref|YP_006402226.1| - 0.0012 17.7 2.2 0.26 10.1 0.1 2.3 2 0 0 2 2 2 2 NB-ARC domain Arch_ATPase PF01637.13 gi|390938488|ref|YP_006402226.1| - 0.0014 18.4 1.3 0.31 10.7 0.0 2.9 2 1 0 2 2 2 1 Archaeal ATPase MobB PF03205.9 gi|390938488|ref|YP_006402226.1| - 0.0057 16.3 5.7 0.064 12.9 0.1 2.6 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.1 gi|390938488|ref|YP_006402226.1| - 0.0091 14.5 0.8 3 6.1 0.2 3.0 3 0 0 3 3 3 0 AAA domain Rad17 PF03215.10 gi|390938488|ref|YP_006402226.1| - 0.011 14.4 0.8 0.26 9.9 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein ABC_ATPase PF09818.4 gi|390938488|ref|YP_006402226.1| - 0.011 14.3 2.4 1.6 7.2 0.0 2.7 3 0 0 3 3 3 0 Predicted ATPase of the ABC class Miro PF08477.8 gi|390938488|ref|YP_006402226.1| - 0.019 15.4 0.4 8.2 6.9 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein PhoH PF02562.11 gi|390938488|ref|YP_006402226.1| - 0.026 13.7 1.1 0.28 10.4 0.1 2.2 2 0 0 2 2 2 0 PhoH-like protein KAP_NTPase PF07693.9 gi|390938488|ref|YP_006402226.1| - 0.029 13.3 0.1 2.1 7.2 0.0 2.3 2 0 0 2 2 2 0 KAP family P-loop domain cobW PF02492.14 gi|390938488|ref|YP_006402226.1| - 0.031 13.7 9.0 0.26 10.7 0.6 2.7 3 0 0 3 3 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|390938488|ref|YP_006402226.1| - 0.051 13.5 4.9 2.9 7.8 0.2 2.8 3 1 0 3 3 2 0 50S ribosome-binding GTPase PIF1 PF05970.9 gi|390938488|ref|YP_006402226.1| - 0.053 12.4 0.6 0.6 8.9 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase AAA_PrkA PF08298.6 gi|390938488|ref|YP_006402226.1| - 0.11 11.1 0.1 1.4 7.5 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain ATP_bind_1 PF03029.12 gi|390938488|ref|YP_006402226.1| - 0.14 11.7 2.5 0.95 8.9 0.2 2.4 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|390938488|ref|YP_006402226.1| - 0.14 11.6 3.2 0.5 9.8 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Thymidylate_kin PF02223.12 gi|390938488|ref|YP_006402226.1| - 0.16 11.3 1.3 14 4.9 0.1 2.5 2 0 0 2 2 2 0 Thymidylate kinase MukB PF04310.7 gi|390938488|ref|YP_006402226.1| - 0.17 11.2 0.3 1.3 8.2 0.0 2.1 2 0 0 2 2 2 0 MukB N-terminal KaiC PF06745.8 gi|390938488|ref|YP_006402226.1| - 0.18 10.9 1.8 0.48 9.4 0.1 2.2 2 0 0 2 2 2 0 KaiC DUF4350 PF14258.1 gi|390938488|ref|YP_006402226.1| - 0.23 11.6 1.7 0.96 9.7 0.1 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF4350) Dynamin_N PF00350.18 gi|390938488|ref|YP_006402226.1| - 0.33 10.7 1.9 10 5.8 0.1 2.4 2 0 0 2 2 2 0 Dynamin family AAA_24 PF13479.1 gi|390938488|ref|YP_006402226.1| - 0.53 9.8 5.6 0.32 10.5 0.3 2.3 2 0 0 2 2 2 0 AAA domain PhdYeFM_antitox PF02604.14 gi|390938488|ref|YP_006402226.1| - 0.62 9.6 3.9 4.5 6.9 0.2 2.9 3 0 0 3 3 2 0 Antitoxin Phd_YefM, type II toxin-antitoxin system SRP54 PF00448.17 gi|390938488|ref|YP_006402226.1| - 8 5.8 6.8 5.3 6.4 0.2 2.8 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain ECF-ribofla_trS PF07155.7 gi|390938489|ref|YP_006402227.1| - 2e-29 102.4 23.3 5.3e-22 78.3 8.0 2.0 1 1 1 2 2 2 2 ECF-type riboflavin transporter, S component CoatB PF10389.4 gi|390938489|ref|YP_006402227.1| - 1.5 8.7 8.7 1.3 8.9 0.2 2.6 2 0 0 2 2 2 0 Bacteriophage coat protein B Ldr_toxin PF13940.1 gi|390938489|ref|YP_006402227.1| - 2.9 7.7 5.0 11 5.8 0.1 2.8 2 0 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system NUDIX PF00293.23 gi|390938490|ref|YP_006402228.1| - 2.8e-23 82.0 0.0 3.5e-23 81.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain FMN_red PF03358.10 gi|390938491|ref|YP_006402229.1| - 4.9e-27 94.3 0.0 7.4e-27 93.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|390938491|ref|YP_006402229.1| - 1.8e-12 47.1 0.0 3e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold DUF357 PF04010.8 gi|390938492|ref|YP_006402230.1| - 1.9e-19 69.1 0.7 3.5e-19 68.2 0.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|390938492|ref|YP_006402230.1| - 6.1e-09 36.1 0.0 1.3e-08 35.0 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase AA_permease_2 PF13520.1 gi|390938494|ref|YP_006402232.1| - 3.1e-17 62.2 70.2 1.2e-16 60.2 42.4 2.1 1 1 1 2 2 2 2 Amino acid permease AA_permease PF00324.16 gi|390938494|ref|YP_006402232.1| - 3e-09 35.7 65.4 1.2e-07 30.4 45.4 3.1 1 1 0 1 1 1 1 Amino acid permease PALP PF00291.20 gi|390938495|ref|YP_006402233.1| - 4.2e-40 137.8 0.0 5.2e-40 137.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Sigma70_r4 PF04545.11 gi|390938496|ref|YP_006402234.1| - 1.6e-10 40.0 1.4 3.2e-10 39.1 0.9 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|390938496|ref|YP_006402234.1| - 3.1e-10 39.2 0.5 5.6e-10 38.3 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_3 PF01381.17 gi|390938496|ref|YP_006402234.1| - 9.7e-08 31.7 0.4 2.1e-07 30.6 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|390938496|ref|YP_006402234.1| - 1.8e-07 30.5 0.3 3.4e-07 29.6 0.2 1.6 1 1 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|390938496|ref|YP_006402234.1| - 2.1e-07 30.3 0.4 9.1e-07 28.3 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain TFX_C PF14601.1 gi|390938496|ref|YP_006402234.1| - 3.1e-07 30.1 0.0 4.3e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4_2 PF08281.7 gi|390938496|ref|YP_006402234.1| - 3e-06 26.5 0.5 6.9e-06 25.4 0.1 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_19 PF12844.2 gi|390938496|ref|YP_006402234.1| - 5.4e-06 26.3 0.3 2.9e-05 24.0 0.1 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|390938496|ref|YP_006402234.1| - 6.6e-05 22.8 0.3 0.00014 21.7 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|390938496|ref|YP_006402234.1| - 7.8e-05 22.4 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|390938496|ref|YP_006402234.1| - 8.1e-05 22.7 0.2 0.00014 21.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|390938496|ref|YP_006402234.1| - 0.00015 21.3 0.2 0.00034 20.1 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|390938496|ref|YP_006402234.1| - 0.00072 19.1 0.0 0.0021 17.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_Tnp_4 PF13613.1 gi|390938496|ref|YP_006402234.1| - 0.00079 18.9 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease HTH_10 PF04967.7 gi|390938496|ref|YP_006402234.1| - 0.00088 18.8 2.7 0.048 13.2 0.2 3.2 3 1 0 3 3 3 1 HTH DNA binding domain HTH_7 PF02796.10 gi|390938496|ref|YP_006402234.1| - 0.00088 19.0 0.9 0.0031 17.3 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|390938496|ref|YP_006402234.1| - 0.00099 18.4 0.1 0.0026 17.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_17 PF12728.2 gi|390938496|ref|YP_006402234.1| - 0.001 19.2 0.1 0.0021 18.2 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|390938496|ref|YP_006402234.1| - 0.0011 18.6 0.0 0.0027 17.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|390938496|ref|YP_006402234.1| - 0.0024 17.4 0.1 0.0055 16.3 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.1 gi|390938496|ref|YP_006402234.1| - 0.0076 16.3 0.1 0.017 15.2 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn helix DUF134 PF02001.11 gi|390938496|ref|YP_006402234.1| - 0.015 15.1 0.1 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF134 MarR PF01047.17 gi|390938496|ref|YP_006402234.1| - 0.015 14.9 0.0 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_8 PF02954.14 gi|390938496|ref|YP_006402234.1| - 0.017 14.6 2.4 0.037 13.5 0.2 2.7 2 1 1 3 3 3 0 Bacterial regulatory protein, Fis family HTH_26 PF13443.1 gi|390938496|ref|YP_006402234.1| - 0.029 14.5 0.3 0.1 12.8 0.1 1.8 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain UPF0122 PF04297.9 gi|390938496|ref|YP_006402234.1| - 0.031 14.2 0.2 0.047 13.7 0.2 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_IclR PF09339.5 gi|390938496|ref|YP_006402234.1| - 0.048 13.2 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|390938496|ref|YP_006402234.1| - 0.068 12.8 0.1 0.12 12.0 0.1 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_ECF PF07638.6 gi|390938496|ref|YP_006402234.1| - 0.07 12.7 0.1 0.12 11.9 0.0 1.4 2 0 0 2 2 1 0 ECF sigma factor NUMOD1 PF07453.8 gi|390938496|ref|YP_006402234.1| - 0.1 12.4 0.1 0.29 11.0 0.0 1.8 1 0 0 1 1 1 0 NUMOD1 domain MerR-DNA-bind PF09278.6 gi|390938496|ref|YP_006402234.1| - 0.14 12.5 2.2 0.15 12.4 0.5 1.7 2 0 0 2 2 2 0 MerR, DNA binding OTCace_N PF02729.16 gi|390938497|ref|YP_006402235.1| - 2.2e-41 140.8 0.0 3.2e-41 140.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|390938497|ref|YP_006402235.1| - 2.3e-32 112.0 0.0 4.5e-32 111.1 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Amidohydro_4 PF13147.1 gi|390938498|ref|YP_006402236.1| - 5.1e-31 108.7 0.9 6.5e-31 108.3 0.6 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|390938498|ref|YP_006402236.1| - 1.9e-22 80.3 0.0 6.2e-22 78.6 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|390938498|ref|YP_006402236.1| - 7.3e-13 48.1 1.0 2.1e-12 46.6 0.7 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|390938498|ref|YP_006402236.1| - 2.3e-05 23.8 0.1 0.041 13.0 0.0 2.9 3 0 0 3 3 3 2 Amidohydrolase family Ald_Xan_dh_C2 PF02738.13 gi|390938499|ref|YP_006402237.1| - 3.1e-147 491.2 0.0 3.8e-147 490.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|390938499|ref|YP_006402237.1| - 5.9e-19 68.1 0.0 1.6e-18 66.7 0.0 1.8 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAD_binding_5 PF00941.16 gi|390938500|ref|YP_006402238.1| - 6e-53 178.7 0.0 8.2e-53 178.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|390938500|ref|YP_006402238.1| - 6.5e-30 103.1 0.1 9.7e-30 102.5 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Cytidylate_kin PF02224.13 gi|390938500|ref|YP_006402238.1| - 0.063 12.7 0.1 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase Fer2_2 PF01799.15 gi|390938501|ref|YP_006402239.1| - 2.1e-21 75.5 0.0 3.6e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|390938501|ref|YP_006402239.1| - 8.9e-07 28.5 2.0 1.4e-06 27.9 0.1 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|390938501|ref|YP_006402239.1| - 2.1e-05 24.3 0.0 3.2e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|390938501|ref|YP_006402239.1| - 0.0013 18.4 0.6 0.018 14.8 0.5 2.5 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain DUF3133 PF11331.3 gi|390938501|ref|YP_006402239.1| - 0.12 11.9 2.2 1.3 8.6 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) Ald_Xan_dh_C2 PF02738.13 gi|390938502|ref|YP_006402240.1| - 9.8e-118 393.8 0.0 1.3e-117 393.4 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|390938502|ref|YP_006402240.1| - 2.4e-19 69.4 0.0 4.8e-19 68.4 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAD_binding_5 PF00941.16 gi|390938503|ref|YP_006402241.1| - 2.6e-54 183.2 0.0 3.6e-54 182.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|390938503|ref|YP_006402241.1| - 1.6e-23 82.6 0.3 2.6e-23 81.9 0.2 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.15 gi|390938504|ref|YP_006402242.1| - 4e-29 100.3 0.2 6.8e-29 99.5 0.1 1.4 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|390938504|ref|YP_006402242.1| - 1.2e-08 34.5 1.0 1.2e-08 34.5 0.7 2.2 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|390938504|ref|YP_006402242.1| - 5.7e-05 22.9 1.1 7.8e-05 22.4 0.8 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|390938504|ref|YP_006402242.1| - 0.016 14.9 2.8 0.25 11.1 1.9 2.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|390938504|ref|YP_006402242.1| - 0.026 14.0 3.8 0.026 14.0 2.6 1.8 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Tricorn_PDZ PF14685.1 gi|390938504|ref|YP_006402242.1| - 0.14 11.9 0.1 1.2 8.9 0.0 2.3 1 1 2 3 3 3 0 Tricorn protease PDZ domain ThiS PF02597.15 gi|390938505|ref|YP_006402243.1| - 2.1e-08 34.4 0.1 2.2e-08 34.3 0.1 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|390938505|ref|YP_006402243.1| - 5.4e-05 22.9 0.2 9.4e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 TGS domain Ub-Mut7C PF14451.1 gi|390938505|ref|YP_006402243.1| - 0.04 13.4 0.0 0.079 12.4 0.0 1.4 1 0 0 1 1 1 0 Mut7-C ubiquitin AA_permease_2 PF13520.1 gi|390938506|ref|YP_006402244.1| - 7.6e-24 84.0 55.7 1e-23 83.5 38.6 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|390938506|ref|YP_006402244.1| - 1.9e-19 69.3 46.5 4.1e-19 68.2 32.2 1.5 1 1 0 1 1 1 1 Amino acid permease DUF2852 PF11014.3 gi|390938506|ref|YP_006402244.1| - 6.7 6.6 7.4 2.7 7.9 1.3 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2852) Metallophos_3 PF14582.1 gi|390938507|ref|YP_006402245.1| - 9.4e-07 28.2 0.7 4.2e-05 22.8 0.1 2.9 3 0 0 3 3 3 1 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.2 gi|390938507|ref|YP_006402245.1| - 5.9e-06 26.1 0.0 4.5e-05 23.3 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|390938507|ref|YP_006402245.1| - 0.016 14.5 1.4 1.6 8.0 0.6 2.3 2 1 0 2 2 2 0 Calcineurin-like phosphoesterase Aminotran_3 PF00202.16 gi|390938509|ref|YP_006402247.1| - 5.2e-90 301.7 0.0 6.2e-90 301.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III DUF2200 PF09966.4 gi|390938509|ref|YP_006402247.1| - 0.022 14.6 0.4 1.4 8.8 0.1 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2200) Amidohydro_3 PF07969.6 gi|390938510|ref|YP_006402248.1| - 5.5e-94 315.6 0.0 6.4e-94 315.4 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|390938510|ref|YP_006402248.1| - 9.1e-10 38.6 0.5 6.9e-06 25.9 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|390938510|ref|YP_006402248.1| - 4.8e-08 32.7 0.0 1.2e-07 31.4 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|390938510|ref|YP_006402248.1| - 0.00029 20.9 0.1 0.21 11.5 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase Flavodoxin_3 PF12641.2 gi|390938511|ref|YP_006402249.1| - 3.6e-08 32.9 0.0 1.9e-05 24.1 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|390938511|ref|YP_006402249.1| - 2.3e-07 30.9 0.0 2.9e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|390938511|ref|YP_006402249.1| - 0.085 12.8 0.0 0.18 11.7 0.0 1.6 1 1 0 1 1 1 0 Flavodoxin CbiG_N PF11760.3 gi|390938511|ref|YP_006402249.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Cobalamin synthesis G N-terminal POR PF01558.13 gi|390938512|ref|YP_006402250.1| - 3.3e-31 108.5 0.2 3.9e-31 108.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|390938513|ref|YP_006402251.1| - 1.7e-28 99.1 0.0 3.1e-28 98.2 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|390938513|ref|YP_006402251.1| - 1.5e-18 67.1 0.0 2.5e-18 66.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|390938513|ref|YP_006402251.1| - 2.1e-10 39.7 12.0 1.7e-06 27.3 2.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|390938513|ref|YP_006402251.1| - 5.7e-08 32.2 13.4 0.00064 19.4 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|390938513|ref|YP_006402251.1| - 1.4e-06 27.9 10.6 2.6e-06 27.1 7.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|390938513|ref|YP_006402251.1| - 3e-06 26.8 1.0 4.3e-05 23.0 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.2 gi|390938513|ref|YP_006402251.1| - 6e-05 23.3 13.2 0.009 16.3 1.5 2.5 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|390938513|ref|YP_006402251.1| - 0.0001 21.9 17.7 0.0071 16.1 1.6 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|390938513|ref|YP_006402251.1| - 0.00037 20.5 12.9 0.075 13.4 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|390938513|ref|YP_006402251.1| - 0.00042 20.1 12.2 0.0015 18.3 8.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|390938513|ref|YP_006402251.1| - 0.00098 19.3 12.9 0.0028 17.9 8.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Transketolase_C PF02780.15 gi|390938513|ref|YP_006402251.1| - 0.0022 17.9 0.0 0.012 15.5 0.0 2.2 2 0 0 2 2 2 1 Transketolase, C-terminal domain DXP_synthase_N PF13292.1 gi|390938513|ref|YP_006402251.1| - 0.0059 15.5 0.1 0.0093 14.9 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Fer4_8 PF13183.1 gi|390938513|ref|YP_006402251.1| - 0.054 13.5 11.3 0.13 12.3 7.8 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|390938513|ref|YP_006402251.1| - 0.26 12.0 7.8 0.69 10.7 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|390938513|ref|YP_006402251.1| - 0.55 10.8 13.4 1.6 9.3 2.2 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|390938513|ref|YP_006402251.1| - 1.4 9.3 13.8 1.7 9.0 2.3 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|390938513|ref|YP_006402251.1| - 8 6.9 15.0 11 6.5 2.8 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|390938513|ref|YP_006402251.1| - 8.1 6.9 9.8 9.5 6.7 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain ATP-grasp_5 PF13549.1 gi|390938514|ref|YP_006402252.1| - 1.5e-76 256.4 0.0 1.8e-76 256.2 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|390938514|ref|YP_006402252.1| - 0.00032 20.1 0.0 0.00036 19.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|390938514|ref|YP_006402252.1| - 0.014 15.1 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|390938514|ref|YP_006402252.1| - 0.025 13.8 0.1 0.052 12.8 0.0 1.4 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Acetyltransf_1 PF00583.19 gi|390938515|ref|YP_006402253.1| - 2.1e-15 56.4 0.3 8e-15 54.6 0.0 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|390938515|ref|YP_006402253.1| - 1.4e-11 44.6 0.1 1.9e-11 44.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|390938515|ref|YP_006402253.1| - 1.5e-09 37.9 0.1 2.5e-09 37.1 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|390938515|ref|YP_006402253.1| - 5e-09 36.2 0.0 6.3e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|390938515|ref|YP_006402253.1| - 5.2e-07 29.6 0.0 6.8e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|390938515|ref|YP_006402253.1| - 6.7e-07 28.9 0.0 9.5e-06 25.2 0.0 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|390938515|ref|YP_006402253.1| - 1.4e-06 28.2 0.0 1.9e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|390938515|ref|YP_006402253.1| - 2.8e-06 26.9 0.0 4.2e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|390938515|ref|YP_006402253.1| - 7.1e-06 25.9 0.1 7.6e-05 22.5 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|390938515|ref|YP_006402253.1| - 0.0015 18.4 0.0 0.0025 17.6 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|390938515|ref|YP_006402253.1| - 0.019 15.1 0.0 0.039 14.1 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain ATP_bind_3 PF01171.15 gi|390938516|ref|YP_006402254.1| - 2.9e-19 69.2 0.0 5.5e-19 68.3 0.0 1.4 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|390938516|ref|YP_006402254.1| - 3.2e-05 23.8 0.0 5.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.10 gi|390938516|ref|YP_006402254.1| - 0.00099 18.5 0.8 0.00099 18.5 0.5 2.9 3 0 0 3 3 3 1 RecR protein QueC PF06508.8 gi|390938516|ref|YP_006402254.1| - 0.085 12.1 0.1 0.21 10.8 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|390938516|ref|YP_006402254.1| - 0.1 11.1 0.1 0.18 10.3 0.1 1.4 1 1 0 1 1 1 0 tRNA methyl transferase NAD_synthase PF02540.12 gi|390938516|ref|YP_006402254.1| - 0.13 11.0 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 NAD synthase CN_hydrolase PF00795.17 gi|390938517|ref|YP_006402255.1| - 3.8e-20 72.0 0.0 5.1e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase HMG-CoA_red PF00368.13 gi|390938518|ref|YP_006402256.1| - 4.4e-82 275.7 6.4 5.6e-82 275.3 4.4 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase HypA PF01155.14 gi|390938519|ref|YP_006402257.1| - 1.5e-15 56.9 0.0 1.9e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF2387 PF09526.5 gi|390938519|ref|YP_006402257.1| - 0.00052 19.8 0.0 0.45 10.4 0.0 2.2 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) TFIIS_C PF01096.13 gi|390938519|ref|YP_006402257.1| - 0.0029 17.1 1.6 0.81 9.3 0.1 2.3 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|390938519|ref|YP_006402257.1| - 0.0039 16.7 0.3 3.1 7.4 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|390938519|ref|YP_006402257.1| - 0.0043 16.7 0.3 3.4 7.4 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|390938519|ref|YP_006402257.1| - 0.0078 16.1 0.2 0.83 9.6 0.0 2.3 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|390938519|ref|YP_006402257.1| - 0.0094 15.7 0.1 0.22 11.3 0.0 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|390938519|ref|YP_006402257.1| - 0.017 14.5 0.1 2.8 7.4 0.0 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.7 gi|390938519|ref|YP_006402257.1| - 0.018 14.8 2.8 2.9 7.7 0.1 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Ribosomal_S27e PF01667.12 gi|390938519|ref|YP_006402257.1| - 0.02 14.4 0.0 3.3 7.3 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S27 zf-ISL3 PF14690.1 gi|390938519|ref|YP_006402257.1| - 0.021 14.8 0.4 0.094 12.7 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|390938519|ref|YP_006402257.1| - 0.022 14.2 1.0 1.2 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-CSL PF05207.8 gi|390938519|ref|YP_006402257.1| - 0.031 13.7 0.6 0.091 12.2 0.4 1.7 1 1 1 2 2 2 0 CSL zinc finger UPF0547 PF10571.4 gi|390938519|ref|YP_006402257.1| - 0.042 13.5 1.5 2.1 8.1 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|390938519|ref|YP_006402257.1| - 0.05 12.9 1.1 0.42 9.9 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|390938519|ref|YP_006402257.1| - 0.065 12.4 1.3 0.77 9.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.1 gi|390938519|ref|YP_006402257.1| - 0.093 12.6 0.4 0.62 10.0 0.3 2.1 1 1 1 2 2 2 0 CpXC protein Zn_ribbon_recom PF13408.1 gi|390938519|ref|YP_006402257.1| - 0.098 12.9 0.2 13 6.1 0.1 2.3 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Lar_restr_allev PF14354.1 gi|390938519|ref|YP_006402257.1| - 0.13 12.5 1.2 2.5 8.4 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.11 gi|390938519|ref|YP_006402257.1| - 0.15 11.8 2.2 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-H2C2_2 PF13465.1 gi|390938519|ref|YP_006402257.1| - 0.26 11.6 1.7 12 6.3 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2HC_2 PF13913.1 gi|390938519|ref|YP_006402257.1| - 1.1 9.0 5.4 1.6 8.4 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type CbiA PF01656.18 gi|390938520|ref|YP_006402258.1| - 1.1e-15 57.5 0.0 1.3e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|390938520|ref|YP_006402258.1| - 7.5e-15 54.5 0.0 1.5e-14 53.5 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|390938520|ref|YP_006402258.1| - 3.9e-07 30.1 0.0 6e-07 29.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|390938520|ref|YP_006402258.1| - 0.0026 16.8 0.1 0.015 14.3 0.0 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase UPRTase PF14681.1 gi|390938521|ref|YP_006402259.1| - 1.6e-35 122.1 0.0 1.9e-35 121.9 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|390938521|ref|YP_006402259.1| - 1.3e-10 41.0 0.1 2.8e-10 40.0 0.0 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|390938521|ref|YP_006402259.1| - 0.071 12.4 0.0 0.12 11.6 0.0 1.6 1 1 0 1 1 1 0 Phosphoribosyl transferase DEAD PF00270.24 gi|390938522|ref|YP_006402260.1| - 6e-27 94.1 0.0 1e-26 93.4 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|390938522|ref|YP_006402260.1| - 6.2e-09 35.8 3.0 9.4e-09 35.3 0.2 2.8 4 0 0 4 4 4 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|390938522|ref|YP_006402260.1| - 1.4e-08 34.4 0.1 3.1e-08 33.3 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_2 PF12826.2 gi|390938522|ref|YP_006402260.1| - 0.00098 18.9 0.0 0.0038 17.0 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif ResIII PF04851.10 gi|390938522|ref|YP_006402260.1| - 0.0016 18.3 0.0 0.0042 16.9 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Sec63 PF02889.11 gi|390938522|ref|YP_006402260.1| - 0.0065 15.7 0.0 0.02 14.1 0.0 1.7 1 1 0 1 1 1 1 Sec63 Brl domain PBP_like PF12727.2 gi|390938523|ref|YP_006402261.1| - 4.1e-52 175.9 0.0 7.9e-52 175.0 0.0 1.5 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.12 gi|390938523|ref|YP_006402261.1| - 1.5e-48 164.2 0.1 2.7e-48 163.3 0.1 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|390938523|ref|YP_006402261.1| - 1.1e-28 99.4 0.0 5.2e-28 97.2 0.0 2.1 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|390938523|ref|YP_006402261.1| - 4.9e-12 45.6 0.0 1.4e-11 44.2 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|390938523|ref|YP_006402261.1| - 0.058 13.0 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|390938523|ref|YP_006402261.1| - 0.19 11.0 0.0 2.2 7.5 0.0 2.3 3 0 0 3 3 3 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Phos_pyr_kin PF08543.7 gi|390938524|ref|YP_006402262.1| - 5e-94 314.0 0.3 6.8e-94 313.6 0.2 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|390938524|ref|YP_006402262.1| - 1.5e-53 180.6 2.6 1.5e-53 180.6 1.8 1.8 2 0 0 2 2 2 1 Putative aldolase PfkB PF00294.19 gi|390938524|ref|YP_006402262.1| - 7.5e-10 38.4 0.3 1.3e-09 37.6 0.2 1.4 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Thi4 PF01946.12 gi|390938525|ref|YP_006402263.1| - 4.2e-81 271.4 0.5 4.9e-81 271.1 0.3 1.0 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|390938525|ref|YP_006402263.1| - 1.4e-14 53.7 4.0 2.4e-06 26.6 0.8 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|390938525|ref|YP_006402263.1| - 1.8e-12 46.8 3.3 1.1e-07 31.0 1.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|390938525|ref|YP_006402263.1| - 1.5e-08 34.5 1.1 4.1e-08 33.1 0.8 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|390938525|ref|YP_006402263.1| - 2.7e-08 33.3 1.0 5e-08 32.4 0.7 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|390938525|ref|YP_006402263.1| - 2.3e-07 30.2 0.1 3.4e-07 29.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|390938525|ref|YP_006402263.1| - 7.7e-07 29.1 0.6 1.1e-06 28.6 0.4 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|390938525|ref|YP_006402263.1| - 1e-05 24.2 1.3 1.7e-05 23.4 0.9 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|390938525|ref|YP_006402263.1| - 9.6e-05 22.5 1.4 0.00056 20.0 0.5 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|390938525|ref|YP_006402263.1| - 0.00059 20.1 0.8 0.002 18.4 0.5 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|390938525|ref|YP_006402263.1| - 0.00075 18.4 0.4 0.0014 17.5 0.3 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|390938525|ref|YP_006402263.1| - 0.0016 17.6 0.1 0.0031 16.6 0.1 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Shikimate_DH PF01488.15 gi|390938525|ref|YP_006402263.1| - 0.003 17.6 0.0 0.0067 16.5 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|390938525|ref|YP_006402263.1| - 0.012 14.5 0.1 0.037 12.9 0.1 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein ThiF PF00899.16 gi|390938525|ref|YP_006402263.1| - 0.019 14.7 0.1 0.043 13.6 0.0 1.6 1 0 0 1 1 1 0 ThiF family K_oxygenase PF13434.1 gi|390938525|ref|YP_006402263.1| - 0.072 12.0 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|390938525|ref|YP_006402263.1| - 0.1 12.3 0.2 0.21 11.3 0.1 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|390938525|ref|YP_006402263.1| - 0.14 10.7 0.4 0.24 9.9 0.3 1.4 1 0 0 1 1 1 0 Tryptophan halogenase Antitoxin-MazE PF04014.13 gi|390938526|ref|YP_006402264.1| - 0.063 13.0 0.0 0.09 12.5 0.0 1.2 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MFS_1 PF07690.11 gi|390938527|ref|YP_006402265.1| - 2e-50 171.5 47.6 4.3e-41 140.7 23.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|390938527|ref|YP_006402265.1| - 6.7e-18 64.5 23.6 1.4e-12 46.9 5.6 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter ATG22 PF11700.3 gi|390938527|ref|YP_006402265.1| - 1.3e-16 60.1 23.4 1.8e-10 39.9 5.1 2.1 2 0 0 2 2 2 2 Vacuole effluxer Atg22 like MFS_1_like PF12832.2 gi|390938527|ref|YP_006402265.1| - 0.23 11.2 5.9 0.57 10.0 0.0 3.8 4 0 0 4 4 4 0 MFS_1 like family Raffinose_syn PF05691.7 gi|390938528|ref|YP_006402266.1| - 1.2e-39 135.4 0.6 1.1e-23 82.7 0.0 3.6 1 1 2 3 3 3 3 Raffinose synthase or seed imbibition protein Sip1 Melibiase PF02065.13 gi|390938528|ref|YP_006402266.1| - 6.9e-05 21.7 0.1 0.0001 21.1 0.0 1.2 1 0 0 1 1 1 1 Melibiase Glyco_hydro_31 PF01055.21 gi|390938528|ref|YP_006402266.1| - 0.00027 19.8 0.0 0.00038 19.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 RAP PF08373.5 gi|390938531|ref|YP_006402269.1| - 0.0011 18.7 0.5 0.0015 18.2 0.3 1.2 1 0 0 1 1 1 1 RAP domain AAA_10 PF12846.2 gi|390938532|ref|YP_006402270.1| - 4.3e-33 115.0 0.1 1.2e-22 80.7 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|390938532|ref|YP_006402270.1| - 3.2e-05 23.8 0.0 5.9e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|390938532|ref|YP_006402270.1| - 4e-05 23.7 0.0 0.079 13.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.4 gi|390938532|ref|YP_006402270.1| - 0.00022 19.9 0.0 0.069 11.7 0.0 2.5 2 1 1 3 3 3 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|390938532|ref|YP_006402270.1| - 0.00023 20.6 0.0 0.16 11.3 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|390938532|ref|YP_006402270.1| - 0.0054 16.7 0.1 0.033 14.1 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain DUF853 PF05872.7 gi|390938532|ref|YP_006402270.1| - 0.017 13.5 0.0 0.053 11.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Arch_ATPase PF01637.13 gi|390938532|ref|YP_006402270.1| - 0.022 14.4 0.0 0.054 13.1 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase ArgK PF03308.11 gi|390938532|ref|YP_006402270.1| - 0.065 11.9 0.0 0.15 10.7 0.0 1.6 1 1 0 1 1 1 0 ArgK protein DUF3987 PF13148.1 gi|390938532|ref|YP_006402270.1| - 0.14 10.6 0.0 0.24 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) ABC_tran PF00005.22 gi|390938532|ref|YP_006402270.1| - 0.17 12.2 0.2 0.76 10.0 0.0 2.0 1 1 1 2 2 2 0 ABC transporter DUF4149 PF13664.1 gi|390938533|ref|YP_006402271.1| - 0.048 13.7 0.2 0.058 13.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) DUF1129 PF06570.6 gi|390938533|ref|YP_006402271.1| - 0.07 12.4 0.7 0.092 12.0 0.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) FA_desaturase PF00487.19 gi|390938533|ref|YP_006402271.1| - 0.093 12.1 0.3 0.095 12.1 0.2 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Tetraspannin PF00335.15 gi|390938533|ref|YP_006402271.1| - 0.12 11.5 3.9 0.15 11.3 2.7 1.1 1 0 0 1 1 1 0 Tetraspanin family AA_permease PF00324.16 gi|390938533|ref|YP_006402271.1| - 0.25 9.6 4.7 0.33 9.2 3.3 1.3 1 1 0 1 1 1 0 Amino acid permease DUF2975 PF11188.3 gi|390938533|ref|YP_006402271.1| - 0.73 9.5 3.6 0.94 9.1 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF4282 PF14110.1 gi|390938533|ref|YP_006402271.1| - 1.1 9.4 6.0 1.7 8.8 4.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) AAA_10 PF12846.2 gi|390938534|ref|YP_006402272.1| - 1e-21 77.7 0.0 1.4e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|390938534|ref|YP_006402272.1| - 1.8e-13 50.8 0.0 3.3e-13 49.9 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|390938534|ref|YP_006402272.1| - 1.4e-11 43.6 0.0 3e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|390938534|ref|YP_006402272.1| - 2.9e-06 27.3 0.1 0.017 15.1 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain TraG-D_C PF12696.2 gi|390938534|ref|YP_006402272.1| - 4.6e-06 26.5 0.0 7.9e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.9 gi|390938534|ref|YP_006402272.1| - 6.1e-06 25.0 0.0 0.0046 15.5 0.0 2.2 2 0 0 2 2 2 2 Type IV secretory system Conjugative DNA transfer AAA_22 PF13401.1 gi|390938534|ref|YP_006402272.1| - 2.1e-05 24.6 0.0 0.0037 17.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|390938534|ref|YP_006402272.1| - 0.00066 19.3 0.0 0.0018 17.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|390938534|ref|YP_006402272.1| - 0.0025 17.3 0.1 0.035 13.5 0.0 2.4 2 1 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|390938534|ref|YP_006402272.1| - 0.0027 16.1 0.0 0.0044 15.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.22 gi|390938534|ref|YP_006402272.1| - 0.0036 17.6 0.0 0.0091 16.2 0.0 1.6 1 0 0 1 1 1 1 ABC transporter T2SE PF00437.15 gi|390938534|ref|YP_006402272.1| - 0.0068 15.3 0.0 0.012 14.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein MobB PF03205.9 gi|390938534|ref|YP_006402272.1| - 0.014 15.1 0.7 0.024 14.3 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|390938534|ref|YP_006402272.1| - 0.033 14.7 0.0 0.064 13.7 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_17 PF13207.1 gi|390938534|ref|YP_006402272.1| - 0.036 14.8 0.0 0.095 13.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|390938534|ref|YP_006402272.1| - 0.038 13.4 0.0 0.11 11.9 0.0 1.7 2 0 0 2 2 2 0 DEAD/DEAH box helicase Zeta_toxin PF06414.7 gi|390938534|ref|YP_006402272.1| - 0.049 12.7 0.0 0.082 11.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|390938534|ref|YP_006402272.1| - 0.068 12.8 0.1 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|390938534|ref|YP_006402272.1| - 0.11 12.8 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|390938534|ref|YP_006402272.1| - 0.15 11.9 0.1 0.37 10.5 0.1 1.6 2 0 0 2 2 2 0 Dynamin family KAP_NTPase PF07693.9 gi|390938534|ref|YP_006402272.1| - 0.15 11.0 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain ATP_bind_1 PF03029.12 gi|390938534|ref|YP_006402272.1| - 0.21 11.1 0.1 0.36 10.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF996 PF06195.8 gi|390938535|ref|YP_006402273.1| - 5.3e-25 88.0 22.9 5.3e-25 88.0 15.9 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF996) DUF1761 PF08570.5 gi|390938535|ref|YP_006402273.1| - 0.035 14.1 18.0 0.034 14.1 8.1 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1761) DUF2569 PF10754.4 gi|390938535|ref|YP_006402273.1| - 0.061 13.5 19.3 0.06 13.5 7.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2569) MscS_TM PF12794.2 gi|390938535|ref|YP_006402273.1| - 0.22 10.1 15.5 0.023 13.3 6.7 1.8 1 1 1 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 YIF1 PF03878.10 gi|390938535|ref|YP_006402273.1| - 0.37 9.8 13.9 4.5 6.3 7.7 2.0 1 1 1 2 2 2 0 YIF1 TMEM210 PF15195.1 gi|390938535|ref|YP_006402273.1| - 0.54 10.4 2.9 0.38 10.8 0.2 2.0 2 0 0 2 2 2 0 TMEM210 family MpPF26 PF07666.6 gi|390938535|ref|YP_006402273.1| - 0.83 9.5 21.1 0.24 11.2 4.1 2.4 2 0 0 2 2 2 0 M penetrans paralogue family 26 DUF1772 PF08592.6 gi|390938535|ref|YP_006402273.1| - 1.7 8.3 13.0 1.6 8.4 0.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) Tetraspannin PF00335.15 gi|390938535|ref|YP_006402273.1| - 4.8 6.3 29.2 0.93 8.7 0.5 2.8 2 1 0 2 2 2 0 Tetraspanin family PKD PF00801.15 gi|390938536|ref|YP_006402274.1| - 0.0079 15.9 0.4 0.017 14.8 0.3 1.5 1 0 0 1 1 1 1 PKD domain PITH PF06201.8 gi|390938537|ref|YP_006402275.1| - 0.022 14.5 0.0 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 PITH domain DUF1628 PF07790.6 gi|390938537|ref|YP_006402275.1| - 0.032 14.9 4.2 0.059 14.1 3.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) SNN_transmemb PF09049.5 gi|390938537|ref|YP_006402275.1| - 4.9 6.9 12.3 1.1 8.9 0.1 2.8 3 0 0 3 3 3 0 Stannin transmembrane T2SE PF00437.15 gi|390938538|ref|YP_006402276.1| - 3e-36 124.7 0.0 4.5e-36 124.1 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_10 PF12846.2 gi|390938538|ref|YP_006402276.1| - 5.1e-05 22.8 0.0 8.7e-05 22.1 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain AAA_19 PF13245.1 gi|390938538|ref|YP_006402276.1| - 0.00018 21.2 0.1 0.00047 19.8 0.1 1.8 1 1 0 1 1 1 1 Part of AAA domain cobW PF02492.14 gi|390938538|ref|YP_006402276.1| - 0.00023 20.6 0.0 0.00055 19.4 0.0 1.7 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|390938538|ref|YP_006402276.1| - 0.0003 20.9 0.0 0.001 19.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|390938538|ref|YP_006402276.1| - 0.00039 20.1 0.0 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|390938538|ref|YP_006402276.1| - 0.0024 16.9 0.0 0.0039 16.3 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|390938538|ref|YP_006402276.1| - 0.0024 17.8 0.0 0.0058 16.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.22 gi|390938538|ref|YP_006402276.1| - 0.003 17.8 0.0 0.005 17.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.13 gi|390938538|ref|YP_006402276.1| - 0.003 17.0 0.0 0.0072 15.8 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|390938538|ref|YP_006402276.1| - 0.0047 17.7 0.0 0.015 16.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|390938538|ref|YP_006402276.1| - 0.005 16.2 0.0 0.011 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|390938538|ref|YP_006402276.1| - 0.0061 16.2 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|390938538|ref|YP_006402276.1| - 0.0088 16.2 0.0 0.019 15.1 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|390938538|ref|YP_006402276.1| - 0.011 16.0 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|390938538|ref|YP_006402276.1| - 0.013 15.4 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|390938538|ref|YP_006402276.1| - 0.018 14.5 0.0 0.039 13.5 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|390938538|ref|YP_006402276.1| - 0.021 14.7 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|390938538|ref|YP_006402276.1| - 0.022 14.5 0.0 0.064 12.9 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|390938538|ref|YP_006402276.1| - 0.026 14.8 0.0 0.046 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|390938538|ref|YP_006402276.1| - 0.03 13.8 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|390938538|ref|YP_006402276.1| - 0.035 13.6 0.0 0.075 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|390938538|ref|YP_006402276.1| - 0.038 13.6 0.0 0.085 12.5 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_24 PF13479.1 gi|390938538|ref|YP_006402276.1| - 0.038 13.5 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|390938538|ref|YP_006402276.1| - 0.061 11.9 0.0 0.1 11.2 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.12 gi|390938538|ref|YP_006402276.1| - 0.09 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|390938538|ref|YP_006402276.1| - 0.11 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_21 PF13304.1 gi|390938538|ref|YP_006402276.1| - 0.12 12.2 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.7 gi|390938538|ref|YP_006402276.1| - 0.13 11.5 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_28 PF13521.1 gi|390938538|ref|YP_006402276.1| - 0.15 11.9 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|390938538|ref|YP_006402276.1| - 0.21 10.4 0.0 0.32 9.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NapE PF06796.6 gi|390938539|ref|YP_006402277.1| - 0.084 12.1 1.7 2.2 7.6 0.1 3.0 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE DDRGK PF09756.4 gi|390938541|ref|YP_006402279.1| - 0.005 16.2 0.0 0.0076 15.6 0.0 1.2 1 0 0 1 1 1 1 DDRGK domain PIGA PF08288.7 gi|390938541|ref|YP_006402279.1| - 0.058 13.7 2.4 0.13 12.6 0.3 2.2 2 0 0 2 2 2 0 PIGA (GPI anchor biosynthesis) HTH_37 PF13744.1 gi|390938542|ref|YP_006402280.1| - 0.011 15.5 0.8 0.02 14.6 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain IZUMO PF15005.1 gi|390938542|ref|YP_006402280.1| - 0.02 14.9 0.9 0.035 14.1 0.6 1.4 1 0 0 1 1 1 0 Izumo sperm-egg fusion PASTA PF03793.14 gi|390938542|ref|YP_006402280.1| - 0.091 12.4 0.5 3.5 7.3 0.0 3.0 2 1 1 3 3 3 0 PASTA domain MS_channel PF00924.13 gi|390938543|ref|YP_006402281.1| - 5.5e-49 166.2 2.5 5.5e-49 166.2 1.7 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|390938543|ref|YP_006402281.1| - 1.2e-05 24.8 2.5 1.2e-05 24.8 1.7 2.3 2 0 0 2 2 2 1 Conserved TM helix STT3 PF02516.9 gi|390938543|ref|YP_006402281.1| - 0.27 10.1 14.0 0.35 9.7 9.7 1.1 1 0 0 1 1 1 0 Oligosaccharyl transferase STT3 subunit DUF432 PF04254.8 gi|390938544|ref|YP_006402282.1| - 5.4e-22 78.0 0.1 7.1e-22 77.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) ThiI PF02568.9 gi|390938546|ref|YP_006402284.1| - 2e-51 174.2 0.0 3.7e-51 173.3 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|390938546|ref|YP_006402284.1| - 3e-22 79.0 1.9 6.8e-22 77.9 1.3 1.6 1 0 0 1 1 1 1 THUMP domain Rhodanese PF00581.15 gi|390938546|ref|YP_006402284.1| - 8.9e-10 38.9 0.0 4.4e-09 36.6 0.0 2.1 1 1 0 1 1 1 1 Rhodanese-like domain QueC PF06508.8 gi|390938546|ref|YP_006402284.1| - 6e-06 25.6 0.0 0.0015 17.8 0.0 2.7 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|390938546|ref|YP_006402284.1| - 0.0003 20.2 0.5 0.00097 18.5 0.0 2.1 3 0 0 3 3 3 1 ATP-binding region ATP_bind_3 PF01171.15 gi|390938546|ref|YP_006402284.1| - 0.0099 15.3 0.0 0.037 13.5 0.0 1.9 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|390938546|ref|YP_006402284.1| - 0.054 12.0 0.0 0.084 11.4 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Ubiquitin_3 PF14836.1 gi|390938546|ref|YP_006402284.1| - 0.16 11.6 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin-like domain AAA PF00004.24 gi|390938547|ref|YP_006402285.1| - 2e-15 57.1 0.0 5e-15 55.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|390938547|ref|YP_006402285.1| - 1.1e-13 50.7 1.1 1.3e-07 30.6 0.1 3.4 2 2 1 4 4 4 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|390938547|ref|YP_006402285.1| - 6e-10 38.5 0.0 1.6e-07 30.5 0.0 2.2 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|390938547|ref|YP_006402285.1| - 8.5e-08 32.3 0.9 1.2e-06 28.6 0.2 3.1 2 1 0 2 2 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|390938547|ref|YP_006402285.1| - 2.1e-06 27.6 0.0 4.8e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|390938547|ref|YP_006402285.1| - 2.2e-06 27.4 0.0 1.2e-05 24.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|390938547|ref|YP_006402285.1| - 3.3e-06 26.2 0.0 6e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|390938547|ref|YP_006402285.1| - 1.2e-05 26.1 0.2 6.9e-05 23.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|390938547|ref|YP_006402285.1| - 4.2e-05 23.6 0.3 0.00086 19.4 0.1 3.0 2 1 0 2 2 1 1 AAA domain DNA_pol3_delta PF06144.8 gi|390938547|ref|YP_006402285.1| - 0.00011 21.7 0.0 0.0002 20.9 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_33 PF13671.1 gi|390938547|ref|YP_006402285.1| - 0.00014 21.7 0.0 0.00046 20.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|390938547|ref|YP_006402285.1| - 0.00039 20.4 0.0 0.0012 18.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|390938547|ref|YP_006402285.1| - 0.00057 18.7 0.1 0.15 10.6 0.0 2.5 2 1 0 2 2 2 1 TIP49 C-terminus Viral_helicase1 PF01443.13 gi|390938547|ref|YP_006402285.1| - 0.0013 18.3 0.0 0.0029 17.1 0.0 1.6 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_2 PF07724.9 gi|390938547|ref|YP_006402285.1| - 0.0018 18.2 0.0 0.0037 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.7 gi|390938547|ref|YP_006402285.1| - 0.0042 16.1 0.0 0.0092 15.0 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|390938547|ref|YP_006402285.1| - 0.0077 16.5 0.0 0.024 14.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|390938547|ref|YP_006402285.1| - 0.0078 15.8 0.1 0.028 13.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|390938547|ref|YP_006402285.1| - 0.012 15.2 0.3 0.21 11.2 0.0 2.8 2 1 1 3 3 3 0 NACHT domain AAA_19 PF13245.1 gi|390938547|ref|YP_006402285.1| - 0.013 15.2 0.0 0.069 12.9 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain IstB_IS21 PF01695.12 gi|390938547|ref|YP_006402285.1| - 0.014 14.7 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|390938547|ref|YP_006402285.1| - 0.015 15.0 0.1 3.7 7.2 0.0 2.4 1 1 1 2 2 2 0 NTPase ABC_tran PF00005.22 gi|390938547|ref|YP_006402285.1| - 0.023 14.9 0.0 0.11 12.7 0.0 2.0 1 1 1 2 2 2 0 ABC transporter RNA_helicase PF00910.17 gi|390938547|ref|YP_006402285.1| - 0.031 14.4 0.0 0.089 12.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|390938547|ref|YP_006402285.1| - 0.042 13.5 0.0 0.35 10.5 0.0 2.3 2 1 1 3 3 3 0 Archaeal ATPase NB-ARC PF00931.17 gi|390938547|ref|YP_006402285.1| - 0.051 12.4 0.0 0.3 9.9 0.0 2.1 1 1 1 2 2 2 0 NB-ARC domain AAA_25 PF13481.1 gi|390938547|ref|YP_006402285.1| - 0.052 12.9 0.1 0.19 11.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|390938547|ref|YP_006402285.1| - 0.052 12.7 0.0 0.096 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF1361 PF07099.6 gi|390938547|ref|YP_006402285.1| - 0.054 13.2 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1361) AAA_29 PF13555.1 gi|390938547|ref|YP_006402285.1| - 0.067 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.1 gi|390938547|ref|YP_006402285.1| - 0.13 12.2 0.1 0.65 10.0 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_23 PF13476.1 gi|390938547|ref|YP_006402285.1| - 0.14 12.4 0.0 0.53 10.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|390938547|ref|YP_006402285.1| - 0.18 11.0 0.0 0.37 9.9 0.0 1.5 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Rep_fac_C PF08542.6 gi|390938548|ref|YP_006402286.1| - 1.1e-24 86.1 0.2 5.1e-24 84.0 0.0 2.2 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|390938548|ref|YP_006402286.1| - 1.9e-15 57.2 0.0 3.7e-15 56.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|390938548|ref|YP_006402286.1| - 6.4e-14 51.9 0.0 7.2e-10 38.7 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|390938548|ref|YP_006402286.1| - 5.5e-10 38.5 0.0 1.3e-05 24.0 0.0 2.1 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|390938548|ref|YP_006402286.1| - 5.3e-09 35.4 0.0 1.5e-08 33.9 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|390938548|ref|YP_006402286.1| - 6.7e-08 32.4 0.0 8.4e-07 28.9 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|390938548|ref|YP_006402286.1| - 3e-07 30.6 0.9 0.025 14.6 0.0 2.9 2 2 1 3 3 3 2 AAA domain DNA_pol3_delta PF06144.8 gi|390938548|ref|YP_006402286.1| - 6.2e-07 29.0 0.0 1.4e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|390938548|ref|YP_006402286.1| - 1.3e-06 28.5 1.1 0.00011 22.2 0.0 2.9 2 2 1 3 3 3 1 AAA ATPase domain TIP49 PF06068.8 gi|390938548|ref|YP_006402286.1| - 6.6e-06 25.0 0.0 0.0088 14.8 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_5 PF07728.9 gi|390938548|ref|YP_006402286.1| - 7.9e-06 25.6 0.1 6.8e-05 22.6 0.0 2.6 2 2 0 2 2 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|390938548|ref|YP_006402286.1| - 1.8e-05 24.2 0.0 3.7e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|390938548|ref|YP_006402286.1| - 3e-05 23.6 0.0 7.3e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|390938548|ref|YP_006402286.1| - 8.4e-05 22.8 0.0 0.00026 21.3 0.0 1.9 2 0 0 2 2 1 1 AAA domain Mg_chelatase PF01078.16 gi|390938548|ref|YP_006402286.1| - 8.7e-05 21.7 0.0 0.0037 16.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|390938548|ref|YP_006402286.1| - 0.00016 20.9 0.1 0.045 12.9 0.0 2.5 1 1 1 2 2 2 1 PhoH-like protein AAA_19 PF13245.1 gi|390938548|ref|YP_006402286.1| - 0.00016 21.3 0.0 0.00044 19.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|390938548|ref|YP_006402286.1| - 0.00039 20.4 0.0 0.0012 18.9 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_10 PF12846.2 gi|390938548|ref|YP_006402286.1| - 0.0018 17.7 0.1 0.031 13.7 0.1 2.8 1 1 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|390938548|ref|YP_006402286.1| - 0.0019 17.6 0.7 0.036 13.4 0.1 2.7 2 2 0 2 2 2 1 AAA domain DNA_pol3_gamma3 PF12169.3 gi|390938548|ref|YP_006402286.1| - 0.002 17.9 0.3 0.82 9.4 0.0 3.2 3 0 0 3 3 3 1 DNA polymerase III subunits gamma and tau domain III AAA_17 PF13207.1 gi|390938548|ref|YP_006402286.1| - 0.002 18.9 0.0 0.006 17.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|390938548|ref|YP_006402286.1| - 0.0024 17.4 0.2 0.022 14.2 0.0 2.4 2 2 0 2 2 2 1 FtsK/SpoIIIE family SNF2_N PF00176.18 gi|390938548|ref|YP_006402286.1| - 0.0046 15.7 0.0 0.17 10.6 0.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain AAA_2 PF07724.9 gi|390938548|ref|YP_006402286.1| - 0.0051 16.7 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.21 gi|390938548|ref|YP_006402286.1| - 0.006 16.0 0.1 0.3 10.5 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_23 PF13476.1 gi|390938548|ref|YP_006402286.1| - 0.0069 16.7 0.0 0.0088 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|390938548|ref|YP_006402286.1| - 0.0073 16.0 0.0 0.59 9.8 0.0 2.5 1 1 1 2 2 2 1 NTPase DUF815 PF05673.8 gi|390938548|ref|YP_006402286.1| - 0.0075 15.2 0.0 0.012 14.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ResIII PF04851.10 gi|390938548|ref|YP_006402286.1| - 0.0087 15.9 0.0 0.058 13.2 0.0 2.1 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|390938548|ref|YP_006402286.1| - 0.014 15.3 0.0 0.03 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|390938548|ref|YP_006402286.1| - 0.029 14.0 0.0 0.35 10.5 0.0 2.4 1 1 0 1 1 1 0 NACHT domain APS_kinase PF01583.15 gi|390938548|ref|YP_006402286.1| - 0.031 13.9 0.0 0.082 12.5 0.0 1.6 2 0 0 2 2 1 0 Adenylylsulphate kinase Arch_ATPase PF01637.13 gi|390938548|ref|YP_006402286.1| - 0.031 13.9 0.0 0.064 12.9 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase RNA_helicase PF00910.17 gi|390938548|ref|YP_006402286.1| - 0.036 14.2 0.0 0.071 13.2 0.0 1.7 1 1 0 1 1 1 0 RNA helicase KTI12 PF08433.5 gi|390938548|ref|YP_006402286.1| - 0.043 13.0 0.0 0.068 12.3 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|390938548|ref|YP_006402286.1| - 0.043 12.9 0.0 0.094 11.8 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.1 gi|390938548|ref|YP_006402286.1| - 0.048 13.2 0.0 0.12 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|390938548|ref|YP_006402286.1| - 0.054 13.4 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|390938548|ref|YP_006402286.1| - 0.059 12.3 0.0 0.23 10.4 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|390938548|ref|YP_006402286.1| - 0.06 12.2 0.0 0.2 10.5 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein Torsin PF06309.6 gi|390938548|ref|YP_006402286.1| - 0.063 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Torsin RelB_N PF12910.2 gi|390938548|ref|YP_006402286.1| - 0.066 12.5 0.8 3 7.2 0.0 2.8 3 0 0 3 3 2 0 Antitoxin of toxin-antitoxin stability system N-terminal Viral_helicase1 PF01443.13 gi|390938548|ref|YP_006402286.1| - 0.084 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.17 gi|390938548|ref|YP_006402286.1| - 0.089 11.6 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|390938548|ref|YP_006402286.1| - 0.1 12.1 1.0 1.1 8.7 0.1 2.7 2 1 0 2 2 2 0 AAA domain DUF1002 PF06207.6 gi|390938548|ref|YP_006402286.1| - 0.15 11.3 0.2 14 4.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1002) Sld5 PF05916.6 gi|390938549|ref|YP_006402287.1| - 2.6e-07 30.8 0.4 4e-07 30.2 0.2 1.3 1 0 0 1 1 1 1 GINS complex protein FMN_bind_2 PF04299.7 gi|390938549|ref|YP_006402287.1| - 0.017 14.6 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 Putative FMN-binding domain HxlR PF01638.12 gi|390938549|ref|YP_006402287.1| - 0.15 11.7 0.5 0.82 9.3 0.1 2.2 2 1 0 2 2 2 0 HxlR-like helix-turn-helix MCM PF00493.18 gi|390938550|ref|YP_006402288.1| - 5.7e-138 459.2 0.0 8.3e-138 458.7 0.0 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|390938550|ref|YP_006402288.1| - 2.8e-26 92.3 0.1 1.5e-25 90.0 0.0 2.3 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.9 gi|390938550|ref|YP_006402288.1| - 6.9e-09 35.5 0.0 1.5e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|390938550|ref|YP_006402288.1| - 3.3e-06 26.4 0.0 0.00063 18.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|390938550|ref|YP_006402288.1| - 0.00069 19.2 0.0 0.0019 17.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|390938550|ref|YP_006402288.1| - 0.0037 16.7 0.1 0.04 13.3 0.1 2.5 1 1 0 1 1 1 1 Sigma-54 interaction domain tRNA_anti-like PF12869.2 gi|390938550|ref|YP_006402288.1| - 0.0095 15.4 0.1 0.022 14.2 0.1 1.5 1 0 0 1 1 1 1 tRNA_anti-like RuvB_C PF05491.8 gi|390938551|ref|YP_006402289.1| - 0.035 13.7 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus 4HBT PF03061.17 gi|390938552|ref|YP_006402290.1| - 0.0002 21.4 0.0 0.00024 21.1 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily TFIIB PF00382.14 gi|390938553|ref|YP_006402291.1| - 2.2e-06 27.3 0.6 9.9e-06 25.2 0.0 2.0 2 0 0 2 2 2 1 Transcription factor TFIIB repeat HTH_24 PF13412.1 gi|390938553|ref|YP_006402291.1| - 0.046 13.1 0.1 5.6 6.4 0.0 3.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding E1-E2_ATPase PF00122.15 gi|390938554|ref|YP_006402292.1| - 2.9e-75 252.2 2.9 2.9e-75 252.2 2.0 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|390938554|ref|YP_006402292.1| - 2.5e-45 154.2 2.5 2.5e-45 154.2 1.7 2.4 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|390938554|ref|YP_006402292.1| - 1.1e-31 110.9 0.2 2.2e-31 109.9 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|390938554|ref|YP_006402292.1| - 2.2e-22 78.3 0.0 4.5e-22 77.2 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|390938554|ref|YP_006402292.1| - 2e-17 63.9 0.0 4.5e-17 62.8 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|390938554|ref|YP_006402292.1| - 2.5e-13 49.7 0.0 5.8e-13 48.6 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|390938554|ref|YP_006402292.1| - 0.0001 22.0 0.2 0.0022 17.6 0.1 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase VIT1 PF01988.14 gi|390938555|ref|YP_006402293.1| - 0.0005 19.6 5.7 0.00056 19.4 4.0 1.0 1 0 0 1 1 1 1 VIT family PMP22_Claudin PF00822.15 gi|390938555|ref|YP_006402293.1| - 0.5 10.0 2.6 0.58 9.7 1.8 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin family Claudin_2 PF13903.1 gi|390938555|ref|YP_006402293.1| - 0.59 9.8 3.1 0.71 9.5 2.2 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Bestrophin PF01062.16 gi|390938555|ref|YP_006402293.1| - 0.94 8.3 3.5 1 8.2 2.4 1.0 1 0 0 1 1 1 0 Bestrophin, RFP-TM, chloride channel FtsX PF02687.16 gi|390938555|ref|YP_006402293.1| - 1.3 8.8 10.4 3 7.6 2.7 2.0 1 1 1 2 2 2 0 FtsX-like permease family DUF4131 PF13567.1 gi|390938555|ref|YP_006402293.1| - 1.9 7.8 6.6 2.2 7.6 4.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) ATP-synt_8 PF00895.15 gi|390938555|ref|YP_006402293.1| - 4.6 7.5 5.7 4.8 7.4 0.6 2.1 2 0 0 2 2 2 0 ATP synthase protein 8 HAD_2 PF13419.1 gi|390938558|ref|YP_006402296.1| - 2.4e-20 73.4 0.0 3.3e-20 73.0 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|390938558|ref|YP_006402296.1| - 8.6e-09 36.1 0.0 1.3e-08 35.4 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|390938558|ref|YP_006402296.1| - 8.1e-07 28.6 0.0 1.6e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|390938558|ref|YP_006402296.1| - 0.0096 15.7 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|390938558|ref|YP_006402296.1| - 0.14 12.3 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase PRANC PF09372.5 gi|390938559|ref|YP_006402297.1| - 0.021 14.7 0.5 0.023 14.6 0.4 1.1 1 0 0 1 1 1 0 PRANC domain Glycos_transf_4 PF00953.16 gi|390938561|ref|YP_006402299.1| - 9.3e-30 103.5 13.6 9.3e-30 103.5 9.4 2.0 2 1 0 2 2 2 1 Glycosyl transferase family 4 ERCC4 PF02732.10 gi|390938562|ref|YP_006402300.1| - 5.4e-19 68.3 0.0 1e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.2 gi|390938562|ref|YP_006402300.1| - 1.1e-11 44.3 0.0 2.3e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|390938562|ref|YP_006402300.1| - 5.6e-11 42.4 0.1 1.1e-09 38.2 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|390938562|ref|YP_006402300.1| - 1.1e-07 31.0 0.1 1.8e-06 27.3 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.10 gi|390938562|ref|YP_006402300.1| - 0.0067 15.8 0.1 0.017 14.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain HHH_3 PF12836.2 gi|390938562|ref|YP_006402300.1| - 0.053 13.4 0.1 0.31 11.0 0.0 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix motif Pex2_Pex12 PF04757.9 gi|390938562|ref|YP_006402300.1| - 0.082 12.3 0.1 0.17 11.3 0.1 1.4 1 1 1 2 2 2 0 Pex2 / Pex12 amino terminal region 5_3_exonuc PF01367.15 gi|390938562|ref|YP_006402300.1| - 0.12 12.5 0.1 5 7.4 0.0 2.4 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold NAD_binding_2 PF03446.10 gi|390938563|ref|YP_006402301.1| - 2.1e-18 66.7 0.0 3e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|390938563|ref|YP_006402301.1| - 6.1e-07 29.6 0.0 1.1e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|390938563|ref|YP_006402301.1| - 5.4e-05 23.2 0.0 7.8e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|390938563|ref|YP_006402301.1| - 7.7e-05 23.0 0.0 0.00015 22.1 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|390938563|ref|YP_006402301.1| - 0.002 17.7 0.0 0.0033 17.0 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_11 PF14833.1 gi|390938563|ref|YP_006402301.1| - 0.0029 17.6 0.0 0.0052 16.8 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Epimerase PF01370.16 gi|390938563|ref|YP_006402301.1| - 0.0036 16.7 0.0 0.0051 16.2 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_7 PF13241.1 gi|390938563|ref|YP_006402301.1| - 0.0074 16.5 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|390938563|ref|YP_006402301.1| - 0.021 13.8 0.0 0.065 12.2 0.0 1.6 2 0 0 2 2 2 0 FAD binding domain NmrA PF05368.8 gi|390938563|ref|YP_006402301.1| - 0.022 14.0 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family XdhC_C PF13478.1 gi|390938565|ref|YP_006402303.1| - 5.9e-29 101.1 0.0 7.6e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|390938565|ref|YP_006402303.1| - 1.1e-18 66.5 0.0 1.8e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 XdhC and CoxI family TrkA_N PF02254.13 gi|390938565|ref|YP_006402303.1| - 0.00059 19.8 0.0 0.00092 19.1 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|390938565|ref|YP_006402303.1| - 0.032 13.6 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|390938565|ref|YP_006402303.1| - 0.032 13.3 0.1 0.092 11.8 0.0 1.7 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|390938565|ref|YP_006402303.1| - 0.036 13.6 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|390938565|ref|YP_006402303.1| - 0.062 12.9 0.0 0.09 12.4 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THUMP PF02926.12 gi|390938567|ref|YP_006402305.1| - 0.013 15.3 0.2 0.025 14.4 0.1 1.3 1 1 0 1 1 1 0 THUMP domain PhoU_div PF01865.11 gi|390938568|ref|YP_006402306.1| - 5.1e-14 51.9 6.0 6.4e-14 51.6 4.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|390938568|ref|YP_006402306.1| - 2.2e-07 31.1 9.6 0.0019 18.5 0.8 2.4 2 1 0 2 2 2 2 PhoU domain TPR_11 PF13414.1 gi|390938568|ref|YP_006402306.1| - 0.0043 16.6 0.4 0.0096 15.5 0.1 1.7 2 0 0 2 2 2 1 TPR repeat TPR_14 PF13428.1 gi|390938568|ref|YP_006402306.1| - 0.11 13.1 1.4 32 5.5 0.1 3.4 2 1 1 3 3 3 0 Tetratricopeptide repeat Aminotran_1_2 PF00155.16 gi|390938569|ref|YP_006402307.1| - 9.5e-45 153.0 0.0 1.1e-44 152.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|390938569|ref|YP_006402307.1| - 1.1e-09 37.3 0.0 2e-09 36.5 0.0 1.4 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.16 gi|390938569|ref|YP_006402307.1| - 0.00021 20.5 0.0 0.00031 19.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|390938569|ref|YP_006402307.1| - 0.2 10.6 0.0 0.43 9.5 0.0 1.5 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family VWA_2 PF13519.1 gi|390938570|ref|YP_006402308.1| - 5.2e-07 29.9 0.0 1e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|390938570|ref|YP_006402308.1| - 8.6e-06 25.5 0.0 1.6e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|390938570|ref|YP_006402308.1| - 2.5e-05 23.5 0.0 5.9e-05 22.3 0.0 1.6 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|390938570|ref|YP_006402308.1| - 8.4e-05 22.3 0.3 0.00032 20.4 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|390938571|ref|YP_006402309.1| - 1.4e-27 96.1 0.8 1.3e-26 93.0 0.0 2.7 3 1 1 4 4 4 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|390938571|ref|YP_006402309.1| - 2.1e-07 30.5 0.0 3.2e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|390938571|ref|YP_006402309.1| - 2.2e-06 27.9 0.1 3.8e-05 23.8 0.0 2.8 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|390938571|ref|YP_006402309.1| - 8.6e-06 25.8 1.2 1.8e-05 24.7 0.1 2.2 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|390938571|ref|YP_006402309.1| - 9.5e-05 22.5 1.3 0.0047 17.0 0.0 3.5 2 2 1 3 3 3 1 AAA domain Mg_chelatase PF01078.16 gi|390938571|ref|YP_006402309.1| - 0.00016 20.8 0.0 0.0011 18.1 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|390938571|ref|YP_006402309.1| - 0.0011 18.0 0.1 0.0037 16.3 0.1 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|390938571|ref|YP_006402309.1| - 0.0013 18.6 0.0 0.066 13.1 0.0 2.7 2 1 1 3 3 3 1 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.21 gi|390938571|ref|YP_006402309.1| - 0.003 17.0 0.0 0.018 14.5 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|390938571|ref|YP_006402309.1| - 0.0046 15.8 0.0 0.0093 14.8 0.0 1.6 1 0 0 1 1 1 1 MCM2/3/5 family AAA_17 PF13207.1 gi|390938571|ref|YP_006402309.1| - 0.092 13.5 3.3 1.5 9.6 2.3 2.7 1 1 0 1 1 1 0 AAA domain DUF296 PF03479.10 gi|390938572|ref|YP_006402310.1| - 7.6e-18 64.2 1.3 9.1e-18 64.0 0.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) tRNA_anti-like PF12869.2 gi|390938572|ref|YP_006402310.1| - 0.0066 15.9 0.0 0.0095 15.4 0.0 1.2 1 0 0 1 1 1 1 tRNA_anti-like Auxin_BP PF02041.11 gi|390938572|ref|YP_006402310.1| - 0.055 12.9 0.1 0.071 12.5 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein ERGIC_N PF13850.1 gi|390938572|ref|YP_006402310.1| - 0.094 12.6 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) DUF123 PF01986.11 gi|390938573|ref|YP_006402311.1| - 2.2e-20 72.6 0.0 2.9e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 tRNA_anti-codon PF01336.20 gi|390938574|ref|YP_006402312.1| - 1.7e-09 37.3 0.6 2.3e-09 36.9 0.4 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain PqqD PF05402.7 gi|390938575|ref|YP_006402313.1| - 7.3e-11 41.9 0.2 1e-10 41.4 0.2 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) HpcH_HpaI PF03328.9 gi|390938575|ref|YP_006402313.1| - 0.12 11.2 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family Thiolase_C PF02803.13 gi|390938576|ref|YP_006402314.1| - 1.8e-13 49.9 0.1 3.8e-13 48.9 0.0 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|390938576|ref|YP_006402314.1| - 8.4e-10 38.0 0.4 1.2e-08 34.2 0.1 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|390938576|ref|YP_006402314.1| - 0.00017 21.1 1.8 0.3 10.7 0.0 3.2 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.21 gi|390938576|ref|YP_006402314.1| - 0.00098 18.6 3.0 0.00098 18.6 2.1 3.0 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|390938576|ref|YP_006402314.1| - 0.002 17.9 0.2 0.45 10.3 0.0 2.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain DUF2231 PF09990.4 gi|390938576|ref|YP_006402314.1| - 0.28 11.5 2.6 7.2 7.0 0.0 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2231) Carboxyl_trans PF01039.17 gi|390938577|ref|YP_006402315.1| - 4e-187 622.4 0.0 4.5e-187 622.3 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|390938577|ref|YP_006402315.1| - 1e-05 24.8 0.1 2.4e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) DUF417 PF04224.7 gi|390938577|ref|YP_006402315.1| - 0.018 14.3 0.1 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF417 Biotin_lipoyl PF00364.17 gi|390938578|ref|YP_006402316.1| - 7.9e-14 51.0 8.4 9.3e-14 50.8 5.0 1.8 1 1 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|390938578|ref|YP_006402316.1| - 3.3e-11 42.6 4.3 1e-05 25.0 0.3 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.1 gi|390938578|ref|YP_006402316.1| - 9.9e-06 25.8 2.5 0.096 13.0 0.1 2.7 3 0 0 3 3 3 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|390938578|ref|YP_006402316.1| - 0.00023 20.4 1.0 0.00023 20.4 0.7 2.8 1 1 2 3 3 3 1 HlyD family secretion protein HlyD PF00529.15 gi|390938578|ref|YP_006402316.1| - 0.004 16.5 4.4 0.084 12.1 0.4 2.2 2 0 0 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|390938578|ref|YP_006402316.1| - 0.008 15.8 7.9 0.051 13.2 0.2 2.5 1 1 2 3 3 3 2 Glycine cleavage H-protein Hjc PF01870.13 gi|390938578|ref|YP_006402316.1| - 0.024 14.2 2.3 0.027 14.0 0.7 1.8 1 1 1 2 2 2 0 Archaeal holliday junction resolvase (hjc) DUF2118 PF09891.4 gi|390938578|ref|YP_006402316.1| - 0.071 12.8 9.5 0.11 12.1 6.2 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) DZF PF07528.9 gi|390938578|ref|YP_006402316.1| - 0.075 12.4 0.4 0.11 11.8 0.3 1.3 1 0 0 1 1 1 0 DZF domain RnfC_N PF13375.1 gi|390938578|ref|YP_006402316.1| - 0.16 11.6 2.8 6 6.6 0.2 2.3 1 1 1 2 2 2 0 RnfC Barrel sandwich hybrid domain Wyosine_form PF08608.7 gi|390938579|ref|YP_006402317.1| - 2.9e-19 68.9 0.0 4.9e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|390938579|ref|YP_006402317.1| - 7.2e-17 62.0 0.2 2.5e-16 60.2 0.1 2.0 2 1 0 2 2 2 1 Radical SAM superfamily HTH_24 PF13412.1 gi|390938580|ref|YP_006402318.1| - 2.9e-07 29.7 0.9 7.3e-07 28.4 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|390938580|ref|YP_006402318.1| - 8.7e-06 25.3 0.3 0.00012 21.7 0.1 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|390938580|ref|YP_006402318.1| - 1.5e-05 24.6 0.1 4.1e-05 23.2 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|390938580|ref|YP_006402318.1| - 2.1e-05 23.9 0.0 5.5e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain EAP30 PF04157.11 gi|390938580|ref|YP_006402318.1| - 0.00015 21.0 1.7 0.041 13.0 0.0 2.8 2 1 1 3 3 3 1 EAP30/Vps36 family MarR_2 PF12802.2 gi|390938580|ref|YP_006402318.1| - 0.00031 20.3 0.0 0.00076 19.1 0.0 1.7 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|390938580|ref|YP_006402318.1| - 0.0033 17.5 0.1 0.016 15.3 0.0 2.2 2 1 0 2 2 2 1 Transcriptional regulator MarR PF01047.17 gi|390938580|ref|YP_006402318.1| - 0.0033 17.0 0.2 0.012 15.3 0.0 2.0 2 0 0 2 2 1 1 MarR family Fe_dep_repress PF01325.14 gi|390938580|ref|YP_006402318.1| - 0.0038 17.1 0.0 0.0099 15.7 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.4 gi|390938580|ref|YP_006402318.1| - 0.0042 16.9 1.3 0.011 15.6 0.0 2.3 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|390938580|ref|YP_006402318.1| - 0.0073 16.6 0.0 0.037 14.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_39 PF14090.1 gi|390938580|ref|YP_006402318.1| - 0.019 14.4 0.2 0.22 11.0 0.0 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain ATG16 PF08614.6 gi|390938580|ref|YP_006402318.1| - 0.026 14.3 2.4 0.039 13.7 1.6 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Ribosomal_S19e PF01090.14 gi|390938580|ref|YP_006402318.1| - 0.037 13.4 0.0 0.1 12.0 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_5 PF01022.15 gi|390938580|ref|YP_006402318.1| - 0.053 13.1 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MotA_activ PF09114.5 gi|390938580|ref|YP_006402318.1| - 0.091 12.5 0.0 0.73 9.6 0.0 2.3 2 0 0 2 2 2 0 Transcription factor MotA, activation domain FaeA PF04703.7 gi|390938580|ref|YP_006402318.1| - 0.11 12.6 0.1 0.45 10.7 0.1 2.1 2 1 0 2 2 1 0 FaeA-like protein NPV_P10 PF05531.7 gi|390938580|ref|YP_006402318.1| - 0.12 12.6 0.2 0.29 11.4 0.1 1.7 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Mrr_N PF14338.1 gi|390938580|ref|YP_006402318.1| - 0.14 12.2 0.7 0.85 9.7 0.0 2.6 2 2 1 3 3 3 0 Mrr N-terminal domain TMF_DNA_bd PF12329.3 gi|390938580|ref|YP_006402318.1| - 0.59 9.9 4.9 0.35 10.7 1.1 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Cauli_AT PF03233.8 gi|390938580|ref|YP_006402318.1| - 0.93 9.1 4.0 0.55 9.9 1.0 1.9 2 0 0 2 2 2 0 Aphid transmission protein Thioredoxin_3 PF13192.1 gi|390938581|ref|YP_006402319.1| - 1.2e-09 37.8 0.0 1.3e-06 28.0 0.1 2.4 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.19 gi|390938581|ref|YP_006402319.1| - 1.3e-05 25.0 0.5 0.00014 21.7 0.1 2.4 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_9 PF14595.1 gi|390938581|ref|YP_006402319.1| - 0.0019 17.7 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.15 gi|390938581|ref|YP_006402319.1| - 0.032 13.9 0.1 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_2 PF13098.1 gi|390938581|ref|YP_006402319.1| - 0.11 12.6 5.3 2.3 8.4 1.0 3.1 2 2 1 3 3 3 0 Thioredoxin-like domain DUF2946 PF11162.3 gi|390938581|ref|YP_006402319.1| - 0.2 11.8 1.5 8.1 6.6 1.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2946) Fe_dep_repr_C PF02742.10 gi|390938582|ref|YP_006402320.1| - 3.9e-18 64.9 1.9 6.5e-18 64.1 1.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|390938582|ref|YP_006402320.1| - 6e-15 54.9 0.0 1e-14 54.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|390938582|ref|YP_006402320.1| - 2.1e-07 30.5 0.0 4.5e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|390938582|ref|YP_006402320.1| - 4.9e-07 29.3 0.0 1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|390938582|ref|YP_006402320.1| - 5.8e-06 26.5 0.0 1.3e-05 25.4 0.0 1.5 2 0 0 2 2 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|390938582|ref|YP_006402320.1| - 9.8e-06 25.3 0.1 1.4e-05 24.8 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|390938582|ref|YP_006402320.1| - 7.9e-05 22.2 0.1 0.00027 20.5 0.0 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|390938582|ref|YP_006402320.1| - 0.0001 21.6 0.1 0.00024 20.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|390938582|ref|YP_006402320.1| - 0.00011 21.6 0.0 0.00031 20.2 0.0 1.8 1 0 0 1 1 1 1 LexA DNA binding domain HTH_45 PF14947.1 gi|390938582|ref|YP_006402320.1| - 0.00013 21.7 0.1 0.0002 21.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|390938582|ref|YP_006402320.1| - 0.00064 19.3 0.0 0.0012 18.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|390938582|ref|YP_006402320.1| - 0.0011 19.0 0.0 0.0031 17.5 0.0 1.9 2 1 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.5 gi|390938582|ref|YP_006402320.1| - 0.0014 18.2 0.0 0.0035 16.8 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|390938582|ref|YP_006402320.1| - 0.003 17.3 0.0 0.006 16.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|390938582|ref|YP_006402320.1| - 0.0038 16.6 0.0 0.0078 15.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|390938582|ref|YP_006402320.1| - 0.0048 16.4 0.0 0.0075 15.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) IF2_N PF04760.10 gi|390938582|ref|YP_006402320.1| - 0.016 14.8 0.0 0.086 12.5 0.0 2.2 3 0 0 3 3 2 0 Translation initiation factor IF-2, N-terminal region HTH_34 PF13601.1 gi|390938582|ref|YP_006402320.1| - 0.034 14.1 0.0 0.058 13.4 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain SecA_PP_bind PF01043.15 gi|390938582|ref|YP_006402320.1| - 0.041 14.2 0.0 0.05 13.9 0.0 1.3 1 0 0 1 1 1 0 SecA preprotein cross-linking domain HTH_38 PF13936.1 gi|390938582|ref|YP_006402320.1| - 0.043 13.3 1.0 0.11 12.0 0.0 2.3 3 1 0 3 3 2 0 Helix-turn-helix domain Topoisom_bac PF01131.15 gi|390938582|ref|YP_006402320.1| - 0.044 12.6 0.0 0.059 12.1 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase rRNA_processing PF08524.6 gi|390938582|ref|YP_006402320.1| - 0.046 13.5 0.1 0.051 13.3 0.1 1.2 1 0 0 1 1 1 0 rRNA processing HTH_40 PF14493.1 gi|390938582|ref|YP_006402320.1| - 0.057 13.6 0.1 0.21 11.8 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|390938582|ref|YP_006402320.1| - 0.08 12.6 0.1 0.6 9.8 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain TFIIE_alpha PF02002.12 gi|390938582|ref|YP_006402320.1| - 0.091 12.2 0.1 0.23 10.9 0.0 1.7 1 1 1 2 2 2 0 TFIIE alpha subunit Mrr_N PF14338.1 gi|390938582|ref|YP_006402320.1| - 0.098 12.7 0.1 0.34 11.0 0.0 1.9 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_29 PF13551.1 gi|390938582|ref|YP_006402320.1| - 0.098 12.8 0.0 0.19 11.8 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn helix NikR_C PF08753.6 gi|390938583|ref|YP_006402321.1| - 3.4e-16 58.9 1.1 5.2e-16 58.2 0.8 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain DUF2373 PF10180.4 gi|390938583|ref|YP_006402321.1| - 0.045 13.3 0.0 0.15 11.5 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2373) RHH_1 PF01402.16 gi|390938583|ref|YP_006402321.1| - 0.083 12.8 0.0 0.27 11.2 0.0 1.9 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family MmlI PF09448.5 gi|390938583|ref|YP_006402321.1| - 0.092 12.5 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Methylmuconolactone methyl-isomerase DASH_Dad3 PF08656.5 gi|390938584|ref|YP_006402322.1| - 0.64 9.7 3.8 1 9.1 2.6 1.4 1 1 0 1 1 1 0 DASH complex subunit Dad3 Orn_Arg_deC_N PF02784.11 gi|390938585|ref|YP_006402323.1| - 9.2e-29 100.3 0.0 1.6e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|390938585|ref|YP_006402323.1| - 5.2e-19 68.0 0.2 4.4e-18 65.0 0.1 2.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Radical_SAM PF04055.16 gi|390938586|ref|YP_006402324.1| - 1.9e-16 60.6 0.0 3.8e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily HypD PF01924.11 gi|390938587|ref|YP_006402325.1| - 3.2e-130 434.0 0.0 3.9e-130 433.7 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.1 gi|390938587|ref|YP_006402325.1| - 0.029 14.1 0.1 0.08 12.7 0.1 1.7 1 0 0 1 1 1 0 zf-RING of BARD1-type protein MTHFR_C PF12225.3 gi|390938587|ref|YP_006402325.1| - 0.19 11.2 1.2 0.32 10.5 0.8 1.3 1 0 0 1 1 1 0 Methylene-tetrahydrofolate reductase C terminal NTP_transf_3 PF12804.2 gi|390938588|ref|YP_006402326.1| - 2.2e-25 89.6 0.0 2.7e-25 89.2 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|390938588|ref|YP_006402326.1| - 2.3e-07 30.5 0.0 3e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|390938588|ref|YP_006402326.1| - 1.7e-05 24.5 0.0 2.5e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 CTP_transf_3 PF02348.14 gi|390938588|ref|YP_006402326.1| - 0.0023 17.6 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|390938588|ref|YP_006402326.1| - 0.021 14.1 0.0 0.028 13.6 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Glyco_tranf_2_3 PF13641.1 gi|390938588|ref|YP_006402326.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 PhoU_div PF01865.11 gi|390938589|ref|YP_006402327.1| - 1.3e-24 86.5 3.8 1.5e-24 86.3 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|390938589|ref|YP_006402327.1| - 1.5e-05 25.3 2.1 0.0011 19.4 0.2 2.3 2 0 0 2 2 2 2 PhoU domain Plasmid_parti PF01672.11 gi|390938589|ref|YP_006402327.1| - 0.0069 16.7 3.1 0.93 9.9 0.3 3.2 1 1 1 2 2 2 1 Putative plasmid partition protein HSCB_C PF07743.8 gi|390938589|ref|YP_006402327.1| - 0.079 13.4 2.4 4.5 7.7 0.1 2.4 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain TBPIP PF07106.8 gi|390938589|ref|YP_006402327.1| - 0.2 11.1 3.6 2.6 7.5 0.4 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TrmB PF01978.14 gi|390938590|ref|YP_006402328.1| - 0.00026 20.6 1.7 0.00084 18.9 0.6 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PaaX PF07848.7 gi|390938590|ref|YP_006402328.1| - 0.066 13.2 0.2 0.15 12.0 0.1 1.6 2 0 0 2 2 2 0 PaaX-like protein Penicillinase_R PF03965.11 gi|390938590|ref|YP_006402328.1| - 0.083 12.9 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor RHH_1 PF01402.16 gi|390938591|ref|YP_006402329.1| - 0.01 15.6 0.5 0.048 13.5 0.1 2.3 1 1 2 3 3 3 0 Ribbon-helix-helix protein, copG family DUF211 PF02680.9 gi|390938592|ref|YP_006402330.1| - 4.3e-32 109.7 7.8 4.9e-32 109.6 5.4 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.21 gi|390938592|ref|YP_006402330.1| - 0.38 10.9 2.8 3 8.0 2.0 2.2 1 1 0 1 1 1 0 Heavy-metal-associated domain DUF3667 PF12412.3 gi|390938593|ref|YP_006402331.1| - 0.0031 16.7 2.4 0.024 13.9 0.0 2.8 2 1 1 3 3 3 2 Protein of unknown function (DUF3667) Metallophos_2 PF12850.2 gi|390938594|ref|YP_006402332.1| - 1.9e-23 83.0 0.0 2.3e-23 82.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|390938594|ref|YP_006402332.1| - 4.4e-07 29.4 0.8 0.00027 20.4 0.0 2.4 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase ABC_tran PF00005.22 gi|390938595|ref|YP_006402333.1| - 4e-35 121.0 0.0 6.2e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938595|ref|YP_006402333.1| - 7e-11 42.6 0.1 4.3e-06 26.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|390938595|ref|YP_006402333.1| - 2.2e-08 33.9 0.2 1.3e-06 28.2 0.0 3.3 4 0 0 4 4 3 1 TOBE domain AAA_23 PF13476.1 gi|390938595|ref|YP_006402333.1| - 1.5e-05 25.4 0.0 3e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|390938595|ref|YP_006402333.1| - 2.1e-05 23.7 0.0 0.02 13.9 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain RNA_helicase PF00910.17 gi|390938595|ref|YP_006402333.1| - 0.00057 20.0 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 RNA helicase SMC_N PF02463.14 gi|390938595|ref|YP_006402333.1| - 0.00073 18.8 0.5 0.0076 15.5 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|390938595|ref|YP_006402333.1| - 0.00099 18.8 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|390938595|ref|YP_006402333.1| - 0.001 19.1 1.5 0.014 15.4 1.1 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|390938595|ref|YP_006402333.1| - 0.0039 17.4 0.3 0.056 13.6 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|390938595|ref|YP_006402333.1| - 0.0067 16.4 0.3 0.018 15.0 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|390938595|ref|YP_006402333.1| - 0.01 15.7 0.0 0.023 14.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|390938595|ref|YP_006402333.1| - 0.015 14.0 0.0 0.021 13.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|390938595|ref|YP_006402333.1| - 0.044 13.5 0.0 0.13 12.0 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|390938595|ref|YP_006402333.1| - 0.048 13.0 0.1 0.59 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_28 PF13521.1 gi|390938595|ref|YP_006402333.1| - 0.051 13.5 0.0 0.13 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|390938595|ref|YP_006402333.1| - 0.059 14.1 0.3 0.14 12.9 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|390938595|ref|YP_006402333.1| - 0.075 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|390938595|ref|YP_006402333.1| - 0.12 11.7 0.1 0.74 9.1 0.1 2.2 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|390938596|ref|YP_006402334.1| - 2.9e-18 66.0 55.1 7.3e-12 45.1 17.2 6.0 4 3 1 5 5 5 3 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|390938597|ref|YP_006402335.1| - 5.3e-16 58.6 0.2 9.4e-16 57.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|390938597|ref|YP_006402335.1| - 7.8e-15 55.3 1.2 1.8e-14 54.1 0.0 1.9 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|390938597|ref|YP_006402335.1| - 9.7e-07 28.8 0.2 9.7e-07 28.8 0.1 2.3 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein Shisa PF13908.1 gi|390938597|ref|YP_006402335.1| - 0.047 13.8 2.7 0.1 12.8 1.9 1.5 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator SoxE PF06525.6 gi|390938597|ref|YP_006402335.1| - 3 7.0 15.3 5.8 6.1 10.6 1.4 1 0 0 1 1 1 0 Sulfocyanin (SoxE) DUF2223 PF09985.4 gi|390938599|ref|YP_006402337.1| - 2.5e-62 210.1 2.3 5.2e-62 209.1 1.6 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) ABC_transp_aux PF09822.4 gi|390938599|ref|YP_006402337.1| - 0.00036 20.0 0.0 0.00088 18.8 0.0 1.6 2 0 0 2 2 2 1 ABC-type uncharacterized transport system Adeno_E3_CR2 PF02439.10 gi|390938599|ref|YP_006402337.1| - 1.4 8.5 4.8 3.4 7.2 3.3 1.6 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 Mucin PF01456.12 gi|390938599|ref|YP_006402337.1| - 2 8.1 23.6 0.84 9.4 14.7 1.6 2 0 0 2 2 2 0 Mucin-like glycoprotein Metallophos PF00149.23 gi|390938600|ref|YP_006402338.1| - 8.9e-17 61.1 1.0 1.6e-16 60.2 0.7 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Rifin_STEVOR PF02009.11 gi|390938600|ref|YP_006402338.1| - 1.2e-05 25.1 6.1 1.9e-05 24.4 4.2 1.2 1 0 0 1 1 1 1 Rifin/stevor family Metallophos_2 PF12850.2 gi|390938600|ref|YP_006402338.1| - 0.00017 21.5 0.0 0.00033 20.5 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF912 PF06024.7 gi|390938600|ref|YP_006402338.1| - 0.13 12.3 1.3 0.41 10.7 0.9 1.9 1 1 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Hjc PF01870.13 gi|390938601|ref|YP_006402339.1| - 1.7e-26 91.6 0.1 2.2e-26 91.2 0.1 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) RecU PF03838.9 gi|390938601|ref|YP_006402339.1| - 0.00038 20.0 0.0 0.00047 19.7 0.0 1.2 1 0 0 1 1 1 1 Recombination protein U NERD PF08378.6 gi|390938601|ref|YP_006402339.1| - 0.028 14.6 0.0 0.031 14.5 0.0 1.2 1 0 0 1 1 1 0 Nuclease-related domain DUF104 PF01954.11 gi|390938601|ref|YP_006402339.1| - 0.063 13.3 0.6 0.38 10.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF104 T2SE PF00437.15 gi|390938602|ref|YP_006402340.1| - 6.4e-12 44.9 0.0 9.8e-12 44.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|390938602|ref|YP_006402340.1| - 1.1e-05 26.2 0.0 9.5e-05 23.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|390938602|ref|YP_006402340.1| - 0.00023 21.4 0.1 0.0009 19.5 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|390938602|ref|YP_006402340.1| - 0.00098 19.0 0.0 0.0046 16.8 0.0 2.1 3 0 0 3 3 2 1 AAA domain AAA_25 PF13481.1 gi|390938602|ref|YP_006402340.1| - 0.0013 18.1 0.0 0.0052 16.2 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|390938602|ref|YP_006402340.1| - 0.002 18.1 0.0 0.0046 16.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|390938602|ref|YP_006402340.1| - 0.0028 17.8 0.0 0.048 13.7 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA PF00004.24 gi|390938602|ref|YP_006402340.1| - 0.003 17.7 0.0 0.012 15.7 0.0 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|390938602|ref|YP_006402340.1| - 0.0045 16.0 0.0 0.0096 14.9 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|390938602|ref|YP_006402340.1| - 0.0057 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|390938602|ref|YP_006402340.1| - 0.0074 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|390938602|ref|YP_006402340.1| - 0.0075 15.7 0.0 0.018 14.5 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|390938602|ref|YP_006402340.1| - 0.0095 15.6 0.0 0.022 14.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|390938602|ref|YP_006402340.1| - 0.011 15.2 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|390938602|ref|YP_006402340.1| - 0.012 15.3 2.5 0.23 11.1 0.0 3.0 3 1 0 3 3 2 0 NTPase DnaB_C PF03796.10 gi|390938602|ref|YP_006402340.1| - 0.012 14.4 0.0 0.026 13.4 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_16 PF13191.1 gi|390938602|ref|YP_006402340.1| - 0.013 15.4 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|390938602|ref|YP_006402340.1| - 0.022 14.3 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_3 PF07726.6 gi|390938602|ref|YP_006402340.1| - 0.024 14.2 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|390938602|ref|YP_006402340.1| - 0.024 14.4 0.0 0.058 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|390938602|ref|YP_006402340.1| - 0.026 15.0 0.0 0.51 10.8 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein KTI12 PF08433.5 gi|390938602|ref|YP_006402340.1| - 0.053 12.7 0.0 0.13 11.4 0.0 1.7 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TrwB_AAD_bind PF10412.4 gi|390938602|ref|YP_006402340.1| - 0.056 12.0 0.0 0.24 9.9 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Sigma54_activat PF00158.21 gi|390938602|ref|YP_006402340.1| - 0.068 12.6 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|390938602|ref|YP_006402340.1| - 0.069 12.2 0.8 0.23 10.5 0.0 2.2 3 0 0 3 3 3 0 Zeta toxin RNA_helicase PF00910.17 gi|390938602|ref|YP_006402340.1| - 0.072 13.2 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_26 PF13500.1 gi|390938602|ref|YP_006402340.1| - 0.077 12.5 0.0 4.5 6.8 0.0 2.7 3 0 0 3 3 3 0 AAA domain ATP_bind_1 PF03029.12 gi|390938602|ref|YP_006402340.1| - 0.09 12.2 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Sigma54_activ_2 PF14532.1 gi|390938602|ref|YP_006402340.1| - 0.13 12.3 0.0 0.35 10.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.13 gi|390938602|ref|YP_006402340.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Metallophos_2 PF12850.2 gi|390938603|ref|YP_006402341.1| - 0.00035 20.4 0.0 0.00062 19.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|390938603|ref|YP_006402341.1| - 0.0005 19.5 2.5 0.00082 18.8 1.7 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase cobW PF02492.14 gi|390938604|ref|YP_006402342.1| - 0.00029 20.3 0.0 0.0018 17.7 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|390938604|ref|YP_006402342.1| - 0.0031 16.9 2.3 0.015 14.6 0.7 2.3 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|390938604|ref|YP_006402342.1| - 0.012 15.3 0.0 0.026 14.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_26 PF13500.1 gi|390938604|ref|YP_006402342.1| - 0.014 15.0 0.1 0.043 13.4 0.0 1.7 1 1 0 2 2 2 0 AAA domain AAA_31 PF13614.1 gi|390938604|ref|YP_006402342.1| - 0.052 13.4 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|390938604|ref|YP_006402342.1| - 0.086 11.6 2.2 0.09 11.5 0.3 1.7 2 0 0 2 2 2 0 ArgK protein PPDK_N PF01326.14 gi|390938605|ref|YP_006402343.1| - 3.3e-101 338.6 0.0 8.5e-101 337.2 0.0 1.6 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|390938605|ref|YP_006402343.1| - 5.9e-88 294.5 0.0 1.1e-87 293.6 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|390938605|ref|YP_006402343.1| - 3.3e-30 103.4 0.5 8.8e-30 102.1 0.4 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.16 gi|390938605|ref|YP_006402343.1| - 0.061 13.4 0.4 0.27 11.4 0.0 2.3 3 0 0 3 3 3 0 Radical SAM superfamily CPSase_L_D2 PF02786.12 gi|390938606|ref|YP_006402344.1| - 1.3e-36 125.8 0.0 1.9e-36 125.3 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|390938606|ref|YP_006402344.1| - 4.8e-23 81.3 0.0 1.2e-22 80.1 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|390938606|ref|YP_006402344.1| - 1.4e-19 70.0 0.0 3e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|390938606|ref|YP_006402344.1| - 2.1e-17 63.4 0.0 8.2e-17 61.5 0.0 1.9 3 0 0 3 3 3 1 ATP-grasp domain RimK PF08443.6 gi|390938606|ref|YP_006402344.1| - 6.1e-11 42.1 0.0 9.8e-11 41.4 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|390938606|ref|YP_006402344.1| - 3.6e-10 39.1 0.0 1.2e-09 37.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|390938606|ref|YP_006402344.1| - 1.8e-09 37.3 0.0 6.7e-09 35.4 0.0 1.9 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|390938606|ref|YP_006402344.1| - 9.4e-09 34.8 0.0 1.6e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|390938606|ref|YP_006402344.1| - 0.013 15.0 0.0 0.029 13.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_YheCD PF14398.1 gi|390938606|ref|YP_006402344.1| - 0.024 13.4 0.0 0.043 12.6 0.0 1.3 1 0 0 1 1 1 0 YheC/D like ATP-grasp ATPgrasp_ST PF14397.1 gi|390938606|ref|YP_006402344.1| - 0.09 11.8 0.0 0.19 10.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.1 gi|390938606|ref|YP_006402344.1| - 0.11 11.6 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain DUF4017 PF13209.1 gi|390938607|ref|YP_006402345.1| - 0.023 14.4 1.1 0.66 9.8 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4017) Sial-lect-inser PF09264.5 gi|390938607|ref|YP_006402345.1| - 0.14 11.4 0.0 0.33 10.2 0.0 1.7 2 0 0 2 2 2 0 Vibrio cholerae sialidase, lectin insertion tRNA-synt_2 PF00152.15 gi|390938608|ref|YP_006402346.1| - 7.8e-89 297.7 0.3 7.8e-89 297.7 0.2 1.5 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|390938608|ref|YP_006402346.1| - 0.02 14.1 0.3 0.087 12.0 0.1 2.1 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|390938608|ref|YP_006402346.1| - 0.086 12.4 0.0 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) PadR PF03551.9 gi|390938609|ref|YP_006402347.1| - 2.7e-05 23.8 0.0 3.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.11 gi|390938609|ref|YP_006402347.1| - 0.00066 19.7 0.0 0.00093 19.2 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor PaaX PF07848.7 gi|390938609|ref|YP_006402347.1| - 0.0015 18.4 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein HTH_27 PF13463.1 gi|390938609|ref|YP_006402347.1| - 0.0018 18.5 0.0 0.0026 18.0 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF3116 PF11313.3 gi|390938609|ref|YP_006402347.1| - 0.016 14.8 0.1 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) S10_plectin PF03501.10 gi|390938609|ref|YP_006402347.1| - 0.016 15.0 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Plectin/S10 domain HTH_12 PF08461.5 gi|390938609|ref|YP_006402347.1| - 0.019 14.6 0.2 0.037 13.7 0.1 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Mrr_N PF14338.1 gi|390938609|ref|YP_006402347.1| - 0.03 14.4 0.0 4 7.6 0.0 2.1 1 1 1 2 2 2 0 Mrr N-terminal domain TrmB PF01978.14 gi|390938609|ref|YP_006402347.1| - 0.067 12.8 0.5 0.29 10.8 0.1 2.2 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB NAD_binding_5 PF07994.7 gi|390938610|ref|YP_006402348.1| - 2.5e-37 128.9 0.0 4.5e-37 128.1 0.0 1.4 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|390938610|ref|YP_006402348.1| - 5.3e-22 77.7 0.0 9.6e-22 76.9 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase ADK PF00406.17 gi|390938611|ref|YP_006402349.1| - 3.6e-49 166.4 0.0 4.5e-49 166.1 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|390938611|ref|YP_006402349.1| - 7e-13 48.0 4.3 1.2e-12 47.2 3.0 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|390938611|ref|YP_006402349.1| - 1.7e-10 41.7 0.8 4.7e-10 40.3 0.1 1.8 1 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|390938611|ref|YP_006402349.1| - 1.1e-07 32.2 0.0 2.4e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|390938611|ref|YP_006402349.1| - 0.00017 21.4 0.0 0.00037 20.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|390938611|ref|YP_006402349.1| - 0.013 14.8 0.1 0.19 11.1 0.0 2.5 3 0 0 3 3 3 0 Thymidylate kinase AAA_28 PF13521.1 gi|390938611|ref|YP_006402349.1| - 0.014 15.3 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|390938611|ref|YP_006402349.1| - 0.027 14.1 0.0 0.052 13.1 0.0 1.4 1 1 0 1 1 1 0 NACHT domain HTH_24 PF13412.1 gi|390938613|ref|YP_006402351.1| - 1.4e-06 27.5 0.5 3.4e-06 26.3 0.4 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|390938613|ref|YP_006402351.1| - 0.00018 20.9 0.1 0.00033 20.1 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|390938613|ref|YP_006402351.1| - 0.0075 15.9 0.1 0.014 15.0 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|390938613|ref|YP_006402351.1| - 0.063 12.9 0.1 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family Aldo_ket_red PF00248.16 gi|390938614|ref|YP_006402352.1| - 2.5e-61 206.9 0.1 3e-61 206.7 0.1 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family DUF1667 PF07892.6 gi|390938614|ref|YP_006402352.1| - 0.099 12.3 0.3 0.25 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1667) CxxCxxCC PF03692.10 gi|390938615|ref|YP_006402353.1| - 1e-10 41.9 0.1 1.4e-10 41.4 0.1 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain EndIII_4Fe-2S PF10576.4 gi|390938616|ref|YP_006402354.1| - 0.079 13.1 1.5 0.13 12.4 1.0 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III HHV6-IE PF03753.8 gi|390938617|ref|YP_006402355.1| - 0.036 11.5 0.0 0.049 11.1 0.0 1.1 1 0 0 1 1 1 0 Human herpesvirus 6 immediate early protein HTH_24 PF13412.1 gi|390938618|ref|YP_006402356.1| - 1.7e-11 43.2 0.1 6.2e-11 41.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|390938618|ref|YP_006402356.1| - 8e-11 41.4 0.0 1.7e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|390938618|ref|YP_006402356.1| - 1.1e-10 41.1 0.0 2.1e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|390938618|ref|YP_006402356.1| - 1.9e-08 33.7 0.2 4.4e-08 32.5 0.0 1.6 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|390938618|ref|YP_006402356.1| - 8e-08 32.4 0.1 1.6e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|390938618|ref|YP_006402356.1| - 3e-06 26.8 0.0 6.6e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|390938618|ref|YP_006402356.1| - 3.6e-05 23.3 0.0 0.0001 21.9 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|390938618|ref|YP_006402356.1| - 0.0002 20.8 0.3 0.00042 19.8 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.1 gi|390938618|ref|YP_006402356.1| - 0.00082 19.3 0.0 0.0016 18.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|390938618|ref|YP_006402356.1| - 0.0022 17.6 0.0 0.0038 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RNA_pol_Rpc34 PF05158.7 gi|390938618|ref|YP_006402356.1| - 0.0023 17.1 0.0 0.0033 16.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit Sigma70_r4 PF04545.11 gi|390938618|ref|YP_006402356.1| - 0.0028 16.9 0.3 0.0092 15.2 0.1 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|390938618|ref|YP_006402356.1| - 0.0033 17.1 0.0 0.0071 16.1 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|390938618|ref|YP_006402356.1| - 0.0037 16.7 0.3 0.0065 15.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|390938618|ref|YP_006402356.1| - 0.0037 17.1 0.1 0.019 14.9 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|390938618|ref|YP_006402356.1| - 0.0059 16.3 0.0 0.013 15.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|390938618|ref|YP_006402356.1| - 0.0064 16.1 0.1 0.016 14.8 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|390938618|ref|YP_006402356.1| - 0.0066 16.0 0.1 0.019 14.5 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.1 gi|390938618|ref|YP_006402356.1| - 0.014 15.4 0.1 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|390938618|ref|YP_006402356.1| - 0.02 15.0 0.0 0.046 13.8 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator RPA_C PF08784.6 gi|390938618|ref|YP_006402356.1| - 0.022 15.1 0.0 0.05 14.0 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal B-block_TFIIIC PF04182.7 gi|390938618|ref|YP_006402356.1| - 0.022 14.6 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_36 PF13730.1 gi|390938618|ref|YP_006402356.1| - 0.023 14.8 0.2 0.07 13.2 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|390938618|ref|YP_006402356.1| - 0.055 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix PaaX PF07848.7 gi|390938618|ref|YP_006402356.1| - 0.059 13.3 1.6 0.062 13.3 0.1 1.8 2 0 0 2 2 1 0 PaaX-like protein DUF4423 PF14394.1 gi|390938618|ref|YP_006402356.1| - 0.15 11.5 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PurA PF04845.8 gi|390938619|ref|YP_006402357.1| - 0.079 12.0 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 PurA ssDNA and RNA-binding protein DNA_primase_lrg PF04104.9 gi|390938620|ref|YP_006402358.1| - 6.4e-33 114.1 0.0 1.3e-32 113.1 0.0 1.5 2 0 0 2 2 2 1 Eukaryotic and archaeal DNA primase, large subunit Acetyltransf_CG PF14542.1 gi|390938622|ref|YP_006402360.1| - 2.6e-21 75.2 0.0 4.6e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.19 gi|390938622|ref|YP_006402360.1| - 5.2e-06 26.3 0.0 8.7e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|390938622|ref|YP_006402360.1| - 0.00017 21.6 0.0 0.00023 21.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|390938622|ref|YP_006402360.1| - 0.00099 18.9 0.1 0.0038 17.0 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|390938622|ref|YP_006402360.1| - 0.0015 18.6 0.0 0.0035 17.4 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain ThiS PF02597.15 gi|390938623|ref|YP_006402361.1| - 8.7e-11 42.1 0.0 9.9e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 ThiS family Ribosomal_L44 PF00935.14 gi|390938624|ref|YP_006402362.1| - 6.1e-29 99.8 12.6 8.5e-29 99.3 8.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ISL3 PF14690.1 gi|390938624|ref|YP_006402362.1| - 0.0006 19.7 3.9 0.063 13.3 0.8 2.6 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|390938624|ref|YP_006402362.1| - 0.0079 15.8 3.8 0.064 12.9 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Mu-like_Com PF10122.4 gi|390938624|ref|YP_006402362.1| - 0.0093 15.0 3.0 0.2 10.7 0.2 2.2 2 0 0 2 2 2 1 Mu-like prophage protein Com zinc_ribbon_2 PF13240.1 gi|390938624|ref|YP_006402362.1| - 0.01 15.2 1.6 3.6 7.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|390938624|ref|YP_006402362.1| - 0.013 15.0 4.2 0.081 12.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|390938624|ref|YP_006402362.1| - 0.02 14.0 1.0 3.5 6.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Yippee-Mis18 PF03226.9 gi|390938624|ref|YP_006402362.1| - 0.036 14.0 0.3 0.045 13.7 0.2 1.2 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Lar_restr_allev PF14354.1 gi|390938624|ref|YP_006402362.1| - 0.05 13.9 1.0 2.2 8.6 0.7 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-DNA_Pol PF08996.5 gi|390938624|ref|YP_006402362.1| - 0.051 12.9 0.4 0.95 8.7 0.1 2.0 2 0 0 2 2 2 0 DNA Polymerase alpha zinc finger Ribosomal_L33 PF00471.15 gi|390938624|ref|YP_006402362.1| - 0.052 13.8 0.5 0.052 13.8 0.4 3.2 2 1 0 2 2 2 0 Ribosomal protein L33 PyrI_C PF02748.10 gi|390938624|ref|YP_006402362.1| - 0.077 12.4 1.5 0.17 11.3 0.1 1.9 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain C1_1 PF00130.17 gi|390938624|ref|YP_006402362.1| - 0.077 12.7 1.1 0.47 10.2 0.1 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) CpXC PF14353.1 gi|390938624|ref|YP_006402362.1| - 0.079 12.9 0.6 3.3 7.7 0.0 2.2 2 0 0 2 2 2 0 CpXC protein Cys_rich_KTR PF14205.1 gi|390938624|ref|YP_006402362.1| - 0.083 12.3 2.7 1.9 8.0 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich KTR DZR PF12773.2 gi|390938624|ref|YP_006402362.1| - 0.089 12.6 3.8 0.29 10.9 2.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF866 PF05907.8 gi|390938624|ref|YP_006402362.1| - 0.096 12.1 0.7 0.33 10.4 0.1 1.9 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF866) DUF2387 PF09526.5 gi|390938624|ref|YP_006402362.1| - 0.1 12.4 1.8 2 8.3 0.1 2.3 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) GFA PF04828.9 gi|390938624|ref|YP_006402362.1| - 0.11 12.4 2.9 1.1 9.2 2.0 2.0 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme DUF2082 PF09855.4 gi|390938624|ref|YP_006402362.1| - 0.12 12.1 1.2 3.8 7.4 0.1 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) OrfB_Zn_ribbon PF07282.6 gi|390938624|ref|YP_006402362.1| - 0.21 11.2 0.2 0.21 11.2 0.2 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain WCCH PF03716.9 gi|390938624|ref|YP_006402362.1| - 0.21 11.0 2.0 0.39 10.1 1.4 1.5 1 0 0 1 1 1 0 WCCH motif DM PF00751.13 gi|390938624|ref|YP_006402362.1| - 0.64 9.5 4.7 6.1 6.4 0.7 2.3 2 0 0 2 2 2 0 DM DNA binding domain Fer4_18 PF13746.1 gi|390938624|ref|YP_006402362.1| - 3.9 7.9 6.3 7.4 7.0 4.3 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Rpr2 PF04032.11 gi|390938624|ref|YP_006402362.1| - 8.1 6.4 7.3 13 5.7 5.0 1.4 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Ribosomal_S27e PF01667.12 gi|390938625|ref|YP_006402363.1| - 6.2e-17 60.8 1.0 7.4e-17 60.6 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 ADK_lid PF05191.9 gi|390938625|ref|YP_006402363.1| - 0.004 16.7 1.0 0.0088 15.6 0.7 1.5 1 1 0 1 1 1 1 Adenylate kinase, active site lid HypA PF01155.14 gi|390938625|ref|YP_006402363.1| - 0.0072 15.9 0.1 0.0086 15.7 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|390938625|ref|YP_006402363.1| - 0.0091 15.2 0.5 0.013 14.7 0.4 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|390938625|ref|YP_006402363.1| - 0.019 14.3 0.6 2.5 7.6 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|390938625|ref|YP_006402363.1| - 0.028 13.6 1.7 0.76 9.0 1.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|390938625|ref|YP_006402363.1| - 0.033 14.0 1.4 0.067 13.0 1.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|390938625|ref|YP_006402363.1| - 0.048 13.9 0.7 0.17 12.1 0.5 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar Aminotran_1_2 PF00155.16 gi|390938625|ref|YP_006402363.1| - 0.054 12.4 0.0 0.055 12.4 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class I and II Zn-ribbon_8 PF09723.5 gi|390938625|ref|YP_006402363.1| - 0.069 13.1 0.6 0.11 12.5 0.4 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_6 PF14599.1 gi|390938625|ref|YP_006402363.1| - 0.086 12.6 0.2 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon Prok-RING_1 PF14446.1 gi|390938625|ref|YP_006402363.1| - 0.09 12.5 0.7 10 5.9 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-CHY PF05495.7 gi|390938625|ref|YP_006402363.1| - 0.098 12.8 0.2 0.12 12.5 0.1 1.1 1 0 0 1 1 1 0 CHY zinc finger zinc_ribbon_2 PF13240.1 gi|390938625|ref|YP_006402363.1| - 0.1 12.0 2.3 0.47 10.0 1.5 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|390938625|ref|YP_006402363.1| - 0.12 11.8 4.7 0.72 9.3 3.3 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF3797 PF12677.2 gi|390938625|ref|YP_006402363.1| - 0.16 11.6 0.8 4.5 6.9 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-ISL3 PF14690.1 gi|390938625|ref|YP_006402363.1| - 0.24 11.4 3.1 3.3 7.8 0.1 2.6 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-BED PF02892.10 gi|390938625|ref|YP_006402363.1| - 0.26 11.0 3.4 8.6 6.2 0.1 2.2 1 1 0 2 2 2 0 BED zinc finger zf-trcl PF13451.1 gi|390938625|ref|YP_006402363.1| - 0.71 9.5 3.9 43 3.8 2.7 2.2 1 1 0 1 1 1 0 Probable zinc-binding domain IncA PF04156.9 gi|390938626|ref|YP_006402364.1| - 0.0017 18.0 0.0 0.0022 17.5 0.0 1.1 1 0 0 1 1 1 1 IncA protein Cytochrom_B_N PF00033.14 gi|390938626|ref|YP_006402364.1| - 0.011 15.0 0.0 0.013 14.8 0.0 1.1 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF4131 PF13567.1 gi|390938626|ref|YP_006402364.1| - 0.019 14.4 0.0 0.022 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4181 PF13789.1 gi|390938626|ref|YP_006402364.1| - 0.051 13.5 1.4 0.072 13.0 1.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4181) T2SM PF04612.7 gi|390938626|ref|YP_006402364.1| - 0.11 12.2 0.1 1.8 8.3 0.0 2.0 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M PIG-P PF08510.7 gi|390938626|ref|YP_006402364.1| - 0.13 11.9 0.3 0.72 9.4 0.2 1.8 1 1 0 1 1 1 0 PIG-P DUF1469 PF07332.6 gi|390938626|ref|YP_006402364.1| - 3.1 7.5 8.2 5.1 6.8 5.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Class_IIIsignal PF04021.7 gi|390938627|ref|YP_006402365.1| - 1.9 8.2 5.8 4.2 7.2 4.0 1.5 1 0 0 1 1 1 0 Class III signal peptide HTH_45 PF14947.1 gi|390938628|ref|YP_006402366.1| - 2.9e-16 59.0 1.8 5.8e-16 58.0 1.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4252 PF14060.1 gi|390938628|ref|YP_006402366.1| - 0.021 14.3 1.0 0.28 10.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4252) CARDB PF07705.6 gi|390938629|ref|YP_006402367.1| - 0.034 14.1 1.2 0.059 13.4 0.9 1.5 1 0 0 1 1 1 0 CARDB HCV_NS4a PF01006.15 gi|390938629|ref|YP_006402367.1| - 0.71 9.4 4.0 2.8 7.5 2.6 2.1 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a VCBS PF13517.1 gi|390938630|ref|YP_006402368.1| - 0.0019 18.5 2.5 0.48 10.8 0.5 2.5 2 0 0 2 2 2 2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Peptidase_S24 PF00717.18 gi|390938631|ref|YP_006402369.1| - 7e-07 28.7 0.4 1.3e-06 27.9 0.3 1.4 1 0 0 1 1 1 1 Peptidase S24-like Abhydrolase_6 PF12697.2 gi|390938633|ref|YP_006402371.1| - 8.1e-31 107.6 0.0 1e-30 107.3 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|390938633|ref|YP_006402371.1| - 6.1e-25 86.8 0.2 1.4e-24 85.7 0.1 1.6 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_5 PF12695.2 gi|390938633|ref|YP_006402371.1| - 8.2e-24 84.0 0.0 1.3e-23 83.4 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|390938633|ref|YP_006402371.1| - 3.1e-18 66.1 0.0 4.7e-16 59.0 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|390938633|ref|YP_006402371.1| - 2.2e-09 36.8 0.0 7e-07 28.6 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.11 gi|390938633|ref|YP_006402371.1| - 1.9e-08 34.0 0.0 0.00034 20.1 0.0 2.4 3 0 0 3 3 3 2 Phospholipase/Carboxylesterase DLH PF01738.13 gi|390938633|ref|YP_006402371.1| - 6.9e-05 22.2 0.0 0.022 14.0 0.0 2.2 2 0 0 2 2 2 1 Dienelactone hydrolase family DUF2305 PF10230.4 gi|390938633|ref|YP_006402371.1| - 0.0002 20.9 0.0 0.0018 17.7 0.0 2.0 2 0 0 2 2 2 1 Uncharacterised conserved protein (DUF2305) FSH1 PF03959.8 gi|390938633|ref|YP_006402371.1| - 0.00027 20.4 0.0 0.00047 19.6 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) DUF1749 PF08538.5 gi|390938633|ref|YP_006402371.1| - 0.00027 19.9 0.1 0.002 17.1 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1749) DUF900 PF05990.7 gi|390938633|ref|YP_006402371.1| - 0.0012 18.2 0.0 0.012 14.9 0.0 1.9 2 0 0 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF900) LCAT PF02450.10 gi|390938633|ref|YP_006402371.1| - 0.0015 17.5 0.0 0.0023 16.9 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase Esterase PF00756.15 gi|390938633|ref|YP_006402371.1| - 0.0019 17.6 0.0 0.0028 17.1 0.0 1.2 1 0 0 1 1 1 1 Putative esterase PGAP1 PF07819.8 gi|390938633|ref|YP_006402371.1| - 0.005 16.4 0.0 0.0093 15.5 0.0 1.5 2 0 0 2 2 1 1 PGAP1-like protein PhoPQ_related PF10142.4 gi|390938633|ref|YP_006402371.1| - 0.0057 15.1 0.0 0.0084 14.6 0.0 1.2 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein BAAT_C PF08840.6 gi|390938633|ref|YP_006402371.1| - 0.0075 15.9 0.0 0.022 14.4 0.0 1.7 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S15 PF02129.13 gi|390938633|ref|YP_006402371.1| - 0.013 14.9 0.1 0.75 9.1 0.0 2.5 3 0 0 3 3 3 0 X-Pro dipeptidyl-peptidase (S15 family) DUF3089 PF11288.3 gi|390938633|ref|YP_006402371.1| - 0.029 13.5 0.0 0.041 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) Caps_synth_CapC PF14102.1 gi|390938633|ref|YP_006402371.1| - 0.042 13.9 0.0 0.062 13.4 0.0 1.2 1 0 0 1 1 1 0 Capsule biosynthesis CapC Ser_hydrolase PF06821.8 gi|390938633|ref|YP_006402371.1| - 0.055 13.0 0.0 0.17 11.5 0.0 1.7 2 0 0 2 2 2 0 Serine hydrolase Abhydrolase_3 PF07859.8 gi|390938633|ref|YP_006402371.1| - 0.08 12.5 0.0 0.17 11.4 0.0 1.5 1 1 0 1 1 1 0 alpha/beta hydrolase fold DUF915 PF06028.6 gi|390938633|ref|YP_006402371.1| - 0.083 11.9 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) FGGY_N PF00370.16 gi|390938634|ref|YP_006402372.1| - 9.6e-67 224.8 0.0 1.3e-66 224.4 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|390938634|ref|YP_006402372.1| - 4.8e-59 199.3 0.1 7e-59 198.7 0.1 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain DAO PF01266.19 gi|390938635|ref|YP_006402373.1| - 1.5e-69 234.6 0.2 1.9e-69 234.2 0.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.10 gi|390938635|ref|YP_006402373.1| - 8.7e-08 32.1 1.0 1.6e-07 31.2 0.7 1.5 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain NAD_binding_8 PF13450.1 gi|390938635|ref|YP_006402373.1| - 4.6e-06 26.5 0.0 1e-05 25.4 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|390938635|ref|YP_006402373.1| - 1.3e-05 25.1 0.6 0.00021 21.2 0.4 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|390938635|ref|YP_006402373.1| - 6.4e-05 22.0 3.2 0.0082 15.1 0.7 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein Pyr_redox PF00070.22 gi|390938635|ref|YP_006402373.1| - 0.00036 20.8 1.6 0.02 15.2 0.3 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|390938635|ref|YP_006402373.1| - 0.0012 18.8 0.1 0.0034 17.3 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain Thi4 PF01946.12 gi|390938635|ref|YP_006402373.1| - 0.0013 17.9 2.6 0.0076 15.3 0.4 2.5 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|390938635|ref|YP_006402373.1| - 0.0013 17.6 0.2 0.003 16.4 0.1 1.6 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|390938635|ref|YP_006402373.1| - 0.0017 17.4 0.5 0.0028 16.7 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain K_oxygenase PF13434.1 gi|390938635|ref|YP_006402373.1| - 0.01 14.7 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|390938635|ref|YP_006402373.1| - 0.012 15.6 0.0 0.048 13.7 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|390938635|ref|YP_006402373.1| - 0.013 14.8 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|390938635|ref|YP_006402373.1| - 0.024 14.2 0.1 0.043 13.4 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|390938635|ref|YP_006402373.1| - 0.033 13.9 0.4 0.23 11.2 0.0 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|390938635|ref|YP_006402373.1| - 0.098 11.1 1.9 3.4 6.0 0.3 2.2 2 0 0 2 2 2 0 HI0933-like protein FAD_oxidored PF12831.2 gi|390938635|ref|YP_006402373.1| - 0.12 11.4 0.1 0.27 10.2 0.1 1.6 1 1 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|390938635|ref|YP_006402373.1| - 1.3 7.6 4.4 0.77 8.3 0.5 1.9 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|390938636|ref|YP_006402374.1| - 9.1e-19 68.1 11.4 8.2e-18 65.0 7.9 3.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|390938636|ref|YP_006402374.1| - 4.6e-11 42.9 6.0 0.00023 21.4 0.2 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|390938636|ref|YP_006402374.1| - 1.3e-10 40.9 0.7 1.3e-10 40.9 0.5 2.9 2 2 2 4 4 4 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|390938636|ref|YP_006402374.1| - 4.2e-08 32.4 13.1 1.7e-05 23.8 1.1 3.6 3 1 1 4 4 4 2 FAD binding domain HI0933_like PF03486.9 gi|390938636|ref|YP_006402374.1| - 6.4e-08 31.4 7.4 1.5e-05 23.6 0.3 4.0 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|390938636|ref|YP_006402374.1| - 8.7e-08 32.0 0.7 0.0024 17.8 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|390938636|ref|YP_006402374.1| - 5e-06 26.7 2.0 0.024 14.6 0.2 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|390938636|ref|YP_006402374.1| - 2.7e-05 23.1 0.8 2.7e-05 23.1 0.6 2.5 2 1 1 3 3 3 1 Glucose inhibited division protein A DAO PF01266.19 gi|390938636|ref|YP_006402374.1| - 3.6e-05 22.8 15.9 0.00082 18.3 1.0 4.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|390938636|ref|YP_006402374.1| - 0.00031 19.8 7.5 0.0029 16.7 0.5 2.9 3 1 0 3 3 3 2 Thi4 family FAD_binding_3 PF01494.14 gi|390938636|ref|YP_006402374.1| - 0.0016 17.5 5.5 0.13 11.2 0.1 3.0 3 0 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.1 gi|390938636|ref|YP_006402374.1| - 0.0047 17.1 0.9 0.12 12.5 0.1 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|390938636|ref|YP_006402374.1| - 0.0095 15.5 1.7 3.1 7.3 0.0 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|390938636|ref|YP_006402374.1| - 0.023 13.6 6.3 0.032 13.1 0.7 2.9 3 0 0 3 3 3 0 Lycopene cyclase protein F420_oxidored PF03807.12 gi|390938636|ref|YP_006402374.1| - 0.4 11.1 0.1 0.4 11.1 0.1 2.3 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent DUF1667 PF07892.6 gi|390938637|ref|YP_006402375.1| - 3.4e-29 100.3 2.3 4.8e-29 99.8 1.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1667) DUF1445 PF07286.7 gi|390938637|ref|YP_006402375.1| - 0.015 14.9 0.1 0.018 14.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1445) GDPD PF03009.12 gi|390938638|ref|YP_006402376.1| - 1.6e-29 103.1 0.0 2.9e-28 99.0 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.14 gi|390938638|ref|YP_006402376.1| - 0.069 12.5 0.1 0.13 11.6 0.0 1.5 1 1 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain Abhydrolase_6 PF12697.2 gi|390938639|ref|YP_006402377.1| - 8.8e-22 78.1 0.0 1.6e-21 77.2 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|390938639|ref|YP_006402377.1| - 6.1e-21 74.7 0.0 7.7e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|390938639|ref|YP_006402377.1| - 9.9e-20 71.0 0.2 6.9e-19 68.3 0.3 1.8 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.16 gi|390938639|ref|YP_006402377.1| - 3.8e-12 45.8 0.0 1.3e-06 27.8 0.1 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.13 gi|390938639|ref|YP_006402377.1| - 1.4e-10 40.8 0.1 4.6e-07 29.3 0.0 2.4 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|390938639|ref|YP_006402377.1| - 7.5e-10 38.7 0.2 1.7e-09 37.6 0.1 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|390938639|ref|YP_006402377.1| - 1.1e-09 38.0 0.0 2.5e-09 36.8 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase BAAT_C PF08840.6 gi|390938639|ref|YP_006402377.1| - 1.1e-05 25.2 0.0 1.8e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.8 gi|390938639|ref|YP_006402377.1| - 0.00037 19.9 0.0 0.0046 16.4 0.0 2.2 1 1 1 2 2 2 1 Serine hydrolase (FSH1) DUF829 PF05705.9 gi|390938639|ref|YP_006402377.1| - 0.0004 20.1 0.0 0.00071 19.3 0.0 1.4 1 1 0 1 1 1 1 Eukaryotic protein of unknown function (DUF829) DUF2048 PF09752.4 gi|390938639|ref|YP_006402377.1| - 0.00042 19.2 0.0 0.062 12.1 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2048) AXE1 PF05448.7 gi|390938639|ref|YP_006402377.1| - 0.00065 18.3 0.4 0.091 11.2 0.0 2.3 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) Esterase PF00756.15 gi|390938639|ref|YP_006402377.1| - 0.0025 17.2 0.0 0.0035 16.8 0.0 1.4 1 0 0 1 1 1 1 Putative esterase DUF676 PF05057.9 gi|390938639|ref|YP_006402377.1| - 0.0054 16.0 0.0 0.0094 15.2 0.0 1.3 1 0 0 1 1 1 1 Putative serine esterase (DUF676) Abhydrolase_3 PF07859.8 gi|390938639|ref|YP_006402377.1| - 0.08 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Lipase_3 PF01764.20 gi|390938639|ref|YP_006402377.1| - 0.096 12.2 0.0 0.14 11.7 0.0 1.4 1 1 0 1 1 1 0 Lipase (class 3) MFS_1 PF07690.11 gi|390938640|ref|YP_006402378.1| - 1.6e-34 119.2 48.0 1.6e-34 119.2 33.2 1.7 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|390938640|ref|YP_006402378.1| - 2.3e-11 42.9 39.1 4.8e-09 35.3 10.9 2.7 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|390938640|ref|YP_006402378.1| - 2e-07 29.7 41.2 2.7e-05 22.7 8.6 2.9 1 1 1 3 3 3 3 MFS/sugar transport protein MFS_1_like PF12832.2 gi|390938640|ref|YP_006402378.1| - 0.01 15.5 0.2 0.01 15.5 0.1 4.7 6 0 0 6 6 6 0 MFS_1 like family DUF3297 PF11730.3 gi|390938640|ref|YP_006402378.1| - 0.052 13.2 0.0 2.8 7.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3297) ATG22 PF11700.3 gi|390938640|ref|YP_006402378.1| - 0.26 9.7 35.1 4.9 5.5 24.4 2.8 1 1 0 1 1 1 0 Vacuole effluxer Atg22 like BIV_Env PF05858.7 gi|390938640|ref|YP_006402378.1| - 2.1 6.1 9.7 0.33 8.8 0.2 2.7 3 0 0 3 3 3 0 Bovine immunodeficiency virus surface protein (SU) OATP PF03137.15 gi|390938640|ref|YP_006402378.1| - 3.4 5.6 23.0 0.088 10.8 1.6 3.6 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Exosortase_EpsH PF09721.5 gi|390938641|ref|YP_006402379.1| - 3.7e-10 39.4 20.8 3.7e-10 39.4 14.4 2.1 2 0 0 2 2 2 1 Transmembrane exosortase (Exosortase_EpsH) AAA_3 PF07726.6 gi|390938642|ref|YP_006402380.1| - 1.6e-34 118.3 0.0 2.5e-34 117.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|390938642|ref|YP_006402380.1| - 1e-12 47.9 0.0 1.9e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|390938642|ref|YP_006402380.1| - 1.4e-06 27.5 0.1 6.1e-06 25.4 0.1 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|390938642|ref|YP_006402380.1| - 0.00044 19.7 0.2 0.017 14.6 0.1 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|390938642|ref|YP_006402380.1| - 0.00094 18.8 0.3 0.0025 17.5 0.2 1.7 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|390938642|ref|YP_006402380.1| - 0.0012 18.0 0.6 0.012 14.8 0.2 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|390938642|ref|YP_006402380.1| - 0.0013 18.8 0.0 0.0026 17.9 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA PF00004.24 gi|390938642|ref|YP_006402380.1| - 0.0015 18.7 0.1 0.0049 17.0 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|390938642|ref|YP_006402380.1| - 0.0062 16.1 0.0 0.0092 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|390938642|ref|YP_006402380.1| - 0.0074 16.4 0.0 0.017 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|390938642|ref|YP_006402380.1| - 0.011 16.4 0.0 0.03 15.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|390938642|ref|YP_006402380.1| - 0.025 13.3 0.2 0.046 12.4 0.1 1.3 1 0 0 1 1 1 0 TIP49 C-terminus FtsK_SpoIIIE PF01580.13 gi|390938642|ref|YP_006402380.1| - 0.029 13.8 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|390938642|ref|YP_006402380.1| - 0.03 13.7 0.0 0.07 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain MCM PF00493.18 gi|390938642|ref|YP_006402380.1| - 0.048 12.4 0.1 7.7 5.2 0.0 2.6 3 0 0 3 3 3 0 MCM2/3/5 family AAA_23 PF13476.1 gi|390938642|ref|YP_006402380.1| - 0.068 13.4 0.0 0.099 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DPM2 PF07297.7 gi|390938643|ref|YP_006402381.1| - 7.4 6.9 9.0 3.6 7.9 0.1 3.2 2 1 0 3 3 3 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) FUSC_2 PF13515.1 gi|390938644|ref|YP_006402382.1| - 0.22 11.4 5.5 0.19 11.6 2.9 1.5 2 0 0 2 2 2 0 Fusaric acid resistance protein-like DUF3325 PF11804.3 gi|390938644|ref|YP_006402382.1| - 0.28 11.1 4.5 0.49 10.3 3.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) OpgC_C PF10129.4 gi|390938645|ref|YP_006402383.1| - 0.016 13.9 0.6 0.02 13.5 0.3 1.2 1 1 0 1 1 1 0 OpgC protein Fun_ATP-synt_8 PF05933.8 gi|390938645|ref|YP_006402383.1| - 0.016 15.1 0.2 0.016 15.1 0.2 2.2 3 0 0 3 3 3 0 Fungal ATP synthase protein 8 (A6L) DUF4129 PF13559.1 gi|390938646|ref|YP_006402384.1| - 4.6e-07 29.7 2.0 1.1e-06 28.4 1.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF4231 PF14015.1 gi|390938646|ref|YP_006402384.1| - 0.79 9.7 3.1 0.89 9.5 0.9 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) DUF58 PF01882.13 gi|390938647|ref|YP_006402385.1| - 3.6e-08 33.4 0.0 8.2e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 YfdX PF10938.3 gi|390938648|ref|YP_006402386.1| - 0.0066 16.1 0.3 0.0086 15.7 0.2 1.2 1 0 0 1 1 1 1 YfdX protein TarH PF02203.10 gi|390938648|ref|YP_006402386.1| - 0.016 15.0 1.3 0.022 14.5 0.9 1.1 1 0 0 1 1 1 0 Tar ligand binding domain homologue DUF3006 PF11213.3 gi|390938648|ref|YP_006402386.1| - 0.061 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) TPR_19 PF14559.1 gi|390938648|ref|YP_006402386.1| - 0.16 12.3 0.5 1.3 9.3 0.3 2.1 1 1 0 1 1 1 0 Tetratricopeptide repeat DUF1616 PF07760.6 gi|390938649|ref|YP_006402387.1| - 2.3e-08 33.5 0.1 2.6e-08 33.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF1616 PF07760.6 gi|390938650|ref|YP_006402388.1| - 9e-31 107.0 10.1 1.1e-30 106.8 7.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4395 PF14340.1 gi|390938650|ref|YP_006402388.1| - 0.14 12.2 2.9 0.67 10.0 2.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) Hemerythrin PF01814.18 gi|390938651|ref|YP_006402389.1| - 3.3e-05 24.0 1.2 6.2e-05 23.1 0.8 1.5 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain CLTH PF10607.4 gi|390938651|ref|YP_006402389.1| - 0.12 12.0 0.7 0.21 11.2 0.5 1.5 1 0 0 1 1 1 0 CTLH/CRA C-terminal to LisH motif domain DUF77 PF01910.12 gi|390938652|ref|YP_006402390.1| - 2.8e-24 84.6 0.2 3.1e-24 84.4 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 RE_CfrBI PF09516.5 gi|390938652|ref|YP_006402390.1| - 0.014 14.3 0.1 0.014 14.2 0.0 1.1 1 0 0 1 1 1 0 CfrBI restriction endonuclease SIMPL PF04402.9 gi|390938652|ref|YP_006402390.1| - 0.037 13.8 0.0 0.044 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF541) DivIC PF04977.10 gi|390938653|ref|YP_006402391.1| - 0.00091 18.6 0.7 0.002 17.5 0.5 1.6 1 0 0 1 1 1 1 Septum formation initiator Sigma70_r4_2 PF08281.7 gi|390938653|ref|YP_006402391.1| - 0.0038 16.6 0.0 0.01 15.2 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 MAD PF05557.8 gi|390938653|ref|YP_006402391.1| - 0.0055 14.8 0.4 0.0056 14.8 0.3 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein DUF4201 PF13870.1 gi|390938653|ref|YP_006402391.1| - 0.006 16.0 0.4 0.0077 15.6 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) Tropomyosin_1 PF12718.2 gi|390938653|ref|YP_006402391.1| - 0.0066 16.3 1.6 0.012 15.4 1.1 1.4 1 0 0 1 1 1 1 Tropomyosin like HTH_23 PF13384.1 gi|390938653|ref|YP_006402391.1| - 0.0067 16.0 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain IncA PF04156.9 gi|390938653|ref|YP_006402391.1| - 0.008 15.7 0.6 0.024 14.2 0.4 1.7 2 0 0 2 2 2 1 IncA protein Med9 PF07544.8 gi|390938653|ref|YP_006402391.1| - 0.011 15.5 1.0 0.75 9.5 0.3 2.7 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 IFT57 PF10498.4 gi|390938653|ref|YP_006402391.1| - 0.013 14.3 0.7 0.015 14.0 0.5 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Vip3A_N PF12495.3 gi|390938653|ref|YP_006402391.1| - 0.016 14.9 0.1 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 Vegetative insecticide protein 3A N terminal DUF555 PF04475.7 gi|390938653|ref|YP_006402391.1| - 0.024 14.6 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF555) DUF904 PF06005.7 gi|390938653|ref|YP_006402391.1| - 0.037 14.3 4.3 0.037 14.3 3.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Shugoshin_N PF07558.6 gi|390938653|ref|YP_006402391.1| - 0.043 13.5 1.7 0.094 12.4 1.2 1.6 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region bZIP_1 PF00170.16 gi|390938653|ref|YP_006402391.1| - 0.048 13.6 2.2 0.12 12.3 1.5 1.7 1 0 0 1 1 1 0 bZIP transcription factor DivIVA PF05103.8 gi|390938653|ref|YP_006402391.1| - 0.051 13.6 1.6 0.078 13.0 0.3 1.9 2 0 0 2 2 2 0 DivIVA protein HALZ PF02183.13 gi|390938653|ref|YP_006402391.1| - 0.092 12.4 5.1 0.21 11.3 3.6 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper Prefoldin_2 PF01920.15 gi|390938653|ref|YP_006402391.1| - 0.13 12.0 3.6 0.29 10.8 2.5 1.7 1 1 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|390938653|ref|YP_006402391.1| - 0.15 11.9 6.3 0.31 10.8 4.0 1.7 1 1 1 2 2 2 0 Basic region leucine zipper Syntaxin-6_N PF09177.6 gi|390938653|ref|YP_006402391.1| - 0.18 12.2 2.1 0.53 10.7 0.9 2.1 1 1 1 2 2 2 0 Syntaxin 6, N-terminal FlaC_arch PF05377.6 gi|390938653|ref|YP_006402391.1| - 0.76 9.7 3.9 3.1 7.7 1.2 2.7 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) TMF_DNA_bd PF12329.3 gi|390938653|ref|YP_006402391.1| - 2.1 8.2 9.5 0.16 11.7 1.8 2.6 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding Peptidase_M19 PF01244.16 gi|390938654|ref|YP_006402392.1| - 1.5e-70 237.6 0.0 1.8e-70 237.4 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|390938654|ref|YP_006402392.1| - 0.032 13.7 0.0 0.073 12.6 0.0 1.4 1 1 0 1 1 1 0 Amidohydrolase DUF4428 PF14471.1 gi|390938655|ref|YP_006402393.1| - 0.0013 18.4 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) PhnA_Zn_Ribbon PF08274.7 gi|390938655|ref|YP_006402393.1| - 0.0019 17.9 0.2 1.2 8.9 0.0 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|390938655|ref|YP_006402393.1| - 0.003 17.3 3.3 0.49 10.2 0.1 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|390938655|ref|YP_006402393.1| - 0.0033 17.3 1.8 1 9.3 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|390938655|ref|YP_006402393.1| - 0.0048 16.0 2.3 0.092 11.9 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|390938655|ref|YP_006402393.1| - 0.01 15.3 2.1 0.97 8.9 0.1 2.3 2 0 0 2 2 2 0 InsA N-terminal domain zf-Di19 PF05605.7 gi|390938655|ref|YP_006402393.1| - 0.014 15.5 0.4 0.74 9.9 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding UPF0547 PF10571.4 gi|390938655|ref|YP_006402393.1| - 0.02 14.6 2.2 0.051 13.2 1.5 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF329 PF03884.9 gi|390938655|ref|YP_006402393.1| - 0.021 14.4 0.4 0.82 9.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) Lar_restr_allev PF14354.1 gi|390938655|ref|YP_006402393.1| - 0.024 14.9 2.5 0.044 14.0 1.8 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_3 PF14369.1 gi|390938655|ref|YP_006402393.1| - 0.025 14.5 3.2 0.66 10.0 0.1 2.5 3 0 0 3 3 2 0 zinc-finger zf-TFIIB PF13453.1 gi|390938655|ref|YP_006402393.1| - 0.031 13.4 0.7 0.076 12.2 0.5 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger DUF2197 PF09963.4 gi|390938655|ref|YP_006402393.1| - 0.033 14.1 0.1 0.058 13.3 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) zf-Sec23_Sec24 PF04810.10 gi|390938655|ref|YP_006402393.1| - 0.043 13.3 1.3 2.2 7.9 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger CpXC PF14353.1 gi|390938655|ref|YP_006402393.1| - 0.056 13.4 0.1 4.1 7.3 0.0 2.0 2 0 0 2 2 2 0 CpXC protein zinc_ribbon_2 PF13240.1 gi|390938655|ref|YP_006402393.1| - 0.064 12.7 2.3 0.94 9.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Arc_trans_TRASH PF08394.5 gi|390938655|ref|YP_006402393.1| - 0.065 13.4 0.1 0.15 12.2 0.1 1.6 1 1 0 1 1 1 0 Archaeal TRASH domain Cren7 PF11520.3 gi|390938655|ref|YP_006402393.1| - 0.067 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin protein Cren7 TFIIS_C PF01096.13 gi|390938655|ref|YP_006402393.1| - 0.1 12.2 0.5 4.1 7.1 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.1 gi|390938655|ref|YP_006402393.1| - 0.13 12.3 1.3 5.4 7.1 0.2 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|390938655|ref|YP_006402393.1| - 0.16 11.3 5.6 2.1 7.7 0.4 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-C2H2_4 PF13894.1 gi|390938655|ref|YP_006402393.1| - 0.16 12.4 2.8 9.3 6.8 0.3 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C4_ClpX PF06689.8 gi|390938655|ref|YP_006402393.1| - 0.16 11.4 1.6 9.4 5.8 0.2 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger zf-H2C2_2 PF13465.1 gi|390938655|ref|YP_006402393.1| - 0.19 12.0 2.6 14 6.1 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|390938655|ref|YP_006402393.1| - 0.26 10.9 2.2 14 5.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|390938655|ref|YP_006402393.1| - 0.26 11.1 1.3 0.88 9.4 0.9 1.8 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|390938655|ref|YP_006402393.1| - 0.27 10.9 2.0 14 5.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|390938655|ref|YP_006402393.1| - 0.44 10.2 4.1 1.6 8.4 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Cys_rich_CPXG PF14255.1 gi|390938655|ref|YP_006402393.1| - 0.62 9.9 2.6 0.71 9.7 0.1 2.0 2 1 0 2 2 2 0 Cysteine-rich CPXCG DUF2296 PF10058.4 gi|390938655|ref|YP_006402393.1| - 0.63 9.8 3.6 1.5 8.5 0.2 2.1 1 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C4_Topoisom PF01396.14 gi|390938655|ref|YP_006402393.1| - 0.89 9.1 4.5 4.4 6.8 0.1 2.4 2 1 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|390938655|ref|YP_006402393.1| - 1.2 8.8 5.1 2.1 8.0 0.2 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain MoCF_biosynth PF00994.19 gi|390938656|ref|YP_006402394.1| - 2.2e-34 117.9 0.0 3.2e-34 117.4 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain ACT_7 PF13840.1 gi|390938657|ref|YP_006402395.1| - 2.7e-09 36.4 0.6 7.3e-09 35.0 0.2 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|390938657|ref|YP_006402395.1| - 3.5e-05 23.1 1.7 0.00045 19.6 0.2 2.8 3 0 0 3 3 3 1 ACT domain HTH_33 PF13592.1 gi|390938657|ref|YP_006402395.1| - 0.013 14.9 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix SBP_bac_5 PF00496.17 gi|390938658|ref|YP_006402396.1| - 2.9e-71 240.2 3.3 4.4e-71 239.6 2.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|390938659|ref|YP_006402397.1| - 1.5e-23 83.2 21.2 1.5e-23 83.2 14.7 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|390938659|ref|YP_006402397.1| - 3.8e-06 26.1 0.1 3.8e-06 26.1 0.1 2.7 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C OPT PF03169.10 gi|390938660|ref|YP_006402398.1| - 5.7e-103 345.4 50.4 6.8e-103 345.2 35.0 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein Endonuclease_5 PF04493.9 gi|390938661|ref|YP_006402399.1| - 1.1e-49 168.6 0.0 1.3e-49 168.3 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF2204 PF09970.4 gi|390938662|ref|YP_006402400.1| - 8.9e-61 204.5 2.5 1e-60 204.3 1.7 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_2 PF01909.18 gi|390938662|ref|YP_006402400.1| - 0.1 12.9 0.9 0.19 12.0 0.1 1.9 2 1 0 2 2 2 0 Nucleotidyltransferase domain Ribosomal_L40e PF01020.12 gi|390938663|ref|YP_006402401.1| - 2.1e-05 24.0 4.7 2.3e-05 23.8 3.3 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.1 gi|390938663|ref|YP_006402401.1| - 0.00013 21.2 1.6 0.00018 20.8 1.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|390938663|ref|YP_006402401.1| - 0.00023 20.2 2.5 0.00031 19.8 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|390938663|ref|YP_006402401.1| - 0.0014 18.4 0.7 0.0016 18.2 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon CpXC PF14353.1 gi|390938663|ref|YP_006402401.1| - 0.022 14.7 0.3 0.53 10.2 0.0 2.0 2 0 0 2 2 2 0 CpXC protein zf-RanBP PF00641.13 gi|390938663|ref|YP_006402401.1| - 0.024 13.7 2.6 0.085 11.9 1.7 1.9 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others zf-nanos PF05741.8 gi|390938663|ref|YP_006402401.1| - 0.046 13.6 1.2 0.68 9.9 0.1 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain Rpr2 PF04032.11 gi|390938663|ref|YP_006402401.1| - 0.096 12.5 0.8 0.12 12.3 0.5 1.2 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DNA_RNApol_7kD PF03604.8 gi|390938663|ref|YP_006402401.1| - 0.11 12.0 1.9 3 7.3 0.2 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|390938663|ref|YP_006402401.1| - 0.29 10.8 1.2 0.5 10.0 0.8 1.5 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DM PF00751.13 gi|390938663|ref|YP_006402401.1| - 0.76 9.3 5.3 0.41 10.2 0.4 2.1 2 0 0 2 2 2 0 DM DNA binding domain zf-FPG_IleRS PF06827.9 gi|390938663|ref|YP_006402401.1| - 1.4 8.6 6.3 8.3 6.1 0.7 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF2688 PF10892.3 gi|390938663|ref|YP_006402401.1| - 1.8 8.2 4.5 7.3 6.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) zf-trcl PF13451.1 gi|390938663|ref|YP_006402401.1| - 2.3 7.9 5.7 9.7 5.9 1.3 2.2 2 0 0 2 2 2 0 Probable zinc-binding domain Zn_Tnp_IS1595 PF12760.2 gi|390938663|ref|YP_006402401.1| - 3.1 7.6 5.8 9.4 6.1 4.1 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0104 PF03706.8 gi|390938664|ref|YP_006402402.1| - 5.5e-22 78.3 17.5 7.7e-22 77.9 11.9 1.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0104) eRF1_2 PF03464.10 gi|390938665|ref|YP_006402403.1| - 3.4e-35 121.2 0.0 6e-35 120.4 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|390938665|ref|YP_006402403.1| - 1.5e-19 70.2 0.4 4.8e-18 65.4 0.1 2.9 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|390938665|ref|YP_006402403.1| - 4.1e-15 55.5 0.0 6.5e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 DUF86 PF01934.12 gi|390938665|ref|YP_006402403.1| - 0.027 14.1 0.0 0.2 11.3 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function DUF86 Lipase_GDSL PF00657.17 gi|390938665|ref|YP_006402403.1| - 0.03 14.1 0.0 0.17 11.6 0.0 2.0 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase SpoU_sub_bind PF08032.7 gi|390938665|ref|YP_006402403.1| - 0.47 10.6 0.1 0.47 10.6 0.1 2.4 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding SWIB PF02201.13 gi|390938666|ref|YP_006402404.1| - 0.031 13.9 0.1 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 SWIB/MDM2 domain ParBc PF02195.13 gi|390938667|ref|YP_006402405.1| - 3.6e-16 59.0 0.0 6.1e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|390938667|ref|YP_006402405.1| - 0.0039 15.7 0.0 0.093 11.2 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1015) DndB PF14072.1 gi|390938667|ref|YP_006402405.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 DNA-sulfur modification-associated DUF4368 PF14287.1 gi|390938667|ref|YP_006402405.1| - 0.15 11.8 0.5 0.49 10.2 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4368) 2-Hacid_dh_C PF02826.14 gi|390938668|ref|YP_006402406.1| - 9e-72 239.9 0.1 1.7e-71 239.0 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|390938668|ref|YP_006402406.1| - 1.5e-35 121.5 0.1 1.7e-35 121.3 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|390938668|ref|YP_006402406.1| - 2e-07 30.9 0.3 6.1e-06 26.1 0.0 2.4 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Nitro_FeMo-Co PF02579.12 gi|390938668|ref|YP_006402406.1| - 0.0018 18.2 0.2 5.4 7.1 0.0 3.2 3 0 0 3 3 3 2 Dinitrogenase iron-molybdenum cofactor Shikimate_DH PF01488.15 gi|390938668|ref|YP_006402406.1| - 0.0024 17.9 0.3 0.0068 16.5 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|390938668|ref|YP_006402406.1| - 0.0037 17.6 0.1 0.015 15.6 0.0 2.2 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|390938668|ref|YP_006402406.1| - 0.0087 15.4 0.0 0.046 13.1 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|390938668|ref|YP_006402406.1| - 0.023 14.3 0.1 0.08 12.5 0.0 2.0 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|390938668|ref|YP_006402406.1| - 0.08 13.4 0.0 0.36 11.3 0.0 2.2 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|390938668|ref|YP_006402406.1| - 0.11 12.2 3.0 3.4 7.3 0.2 2.5 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF3344 PF11824.3 gi|390938671|ref|YP_006402409.1| - 0.023 14.0 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3344) tRNA_deacylase PF04414.7 gi|390938672|ref|YP_006402410.1| - 2.3e-57 193.5 0.0 3.1e-57 193.1 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Asparaginase PF00710.15 gi|390938673|ref|YP_006402411.1| - 1.4e-88 296.7 0.0 1.6e-88 296.5 0.0 1.0 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|390938673|ref|YP_006402411.1| - 0.026 13.8 0.0 0.55 9.5 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding protein domain FeoA PF04023.9 gi|390938673|ref|YP_006402411.1| - 0.085 12.8 0.1 27 4.8 0.0 3.0 3 0 0 3 3 3 0 FeoA domain GatB_N PF02934.10 gi|390938674|ref|YP_006402412.1| - 9.4e-80 267.5 0.0 1.4e-79 267.0 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|390938674|ref|YP_006402412.1| - 2.4e-23 82.4 1.2 2.4e-23 82.4 0.8 1.9 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|390938674|ref|YP_006402412.1| - 3.5e-17 62.3 0.1 1.6e-16 60.2 0.0 2.1 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|390938674|ref|YP_006402412.1| - 8.8e-05 22.3 1.3 0.00025 20.9 0.9 1.8 1 0 0 1 1 1 1 Yqey-like protein tRNA_synt_1c_R1 PF04558.10 gi|390938674|ref|YP_006402412.1| - 0.031 13.7 0.2 0.085 12.3 0.2 1.7 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 HTH_IclR PF09339.5 gi|390938676|ref|YP_006402414.1| - 0.088 12.4 0.2 0.77 9.3 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain Dynactin_p22 PF07426.6 gi|390938676|ref|YP_006402414.1| - 0.097 11.9 0.2 0.66 9.2 0.0 2.0 2 0 0 2 2 2 0 Dynactin subunit p22 HTH_Crp_2 PF13545.1 gi|390938676|ref|YP_006402414.1| - 0.11 12.2 0.2 0.65 9.8 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain eIF-5a PF01287.15 gi|390938677|ref|YP_006402415.1| - 1.3e-10 41.0 0.9 2e-10 40.4 0.6 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|390938677|ref|YP_006402415.1| - 1.4e-05 24.8 0.1 4.8e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.15 gi|390938677|ref|YP_006402415.1| - 0.00026 20.5 2.7 0.00052 19.6 1.9 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain KOW PF00467.24 gi|390938677|ref|YP_006402415.1| - 0.064 13.0 0.1 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 KOW motif CN_hydrolase PF00795.17 gi|390938679|ref|YP_006402417.1| - 1.3e-05 24.6 0.0 0.0043 16.4 0.0 2.1 1 1 1 2 2 2 2 Carbon-nitrogen hydrolase Topoisom_bac PF01131.15 gi|390938680|ref|YP_006402418.1| - 2e-91 306.8 0.2 3.4e-91 306.0 0.1 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|390938680|ref|YP_006402418.1| - 1.7e-21 76.0 0.0 5.7e-21 74.3 0.0 2.0 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|390938680|ref|YP_006402418.1| - 2.5e-13 49.8 0.0 8.1e-13 48.2 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|390938680|ref|YP_006402418.1| - 7.5e-06 25.9 0.0 2.1e-05 24.4 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|390938680|ref|YP_006402418.1| - 1.8e-05 24.4 0.0 0.64 9.9 0.0 3.6 3 0 0 3 3 3 2 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|390938680|ref|YP_006402418.1| - 0.00073 18.4 0.0 0.0014 17.4 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain zf-dskA_traR PF01258.12 gi|390938680|ref|YP_006402418.1| - 0.019 14.7 1.5 0.069 12.9 1.0 2.0 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger DUF1890 PF09001.6 gi|390938680|ref|YP_006402418.1| - 0.051 13.5 0.2 1.7 8.6 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1890) TetR_C_9 PF14514.1 gi|390938680|ref|YP_006402418.1| - 0.11 12.2 2.8 8.4 6.2 0.0 4.1 4 0 0 4 4 4 0 Transcriptional regulator, TetR, C-terminal Rad50_zn_hook PF04423.9 gi|390938680|ref|YP_006402418.1| - 0.2 11.1 2.8 1.3 8.5 0.2 3.6 2 0 0 2 2 2 0 Rad50 zinc hook motif SSF PF00474.12 gi|390938681|ref|YP_006402419.1| - 1.5e-19 69.9 36.7 1.5e-19 69.9 25.5 1.9 2 1 1 3 3 3 1 Sodium:solute symporter family Adipogenin PF15202.1 gi|390938682|ref|YP_006402420.1| - 0.44 10.4 2.7 0.51 10.2 1.9 1.1 1 0 0 1 1 1 0 Adipogenin MarR_2 PF12802.2 gi|390938683|ref|YP_006402421.1| - 4.4e-08 32.6 0.2 9.1e-08 31.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|390938683|ref|YP_006402421.1| - 1.2e-07 30.9 1.8 7.2e-07 28.5 0.4 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|390938683|ref|YP_006402421.1| - 2.7e-05 24.3 0.1 5.9e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|390938683|ref|YP_006402421.1| - 3.8e-05 23.3 0.2 9.2e-05 22.0 0.1 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|390938683|ref|YP_006402421.1| - 0.00061 19.4 0.2 0.0018 17.9 0.2 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|390938683|ref|YP_006402421.1| - 0.0016 18.2 0.2 0.0049 16.6 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|390938683|ref|YP_006402421.1| - 0.0018 17.6 0.7 0.004 16.4 0.2 1.8 2 0 0 2 2 2 1 CodY helix-turn-helix domain Fe_dep_repress PF01325.14 gi|390938683|ref|YP_006402421.1| - 0.0027 17.5 0.2 0.032 14.1 0.0 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|390938683|ref|YP_006402421.1| - 0.0054 16.5 0.2 0.011 15.4 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain NMT1_2 PF13379.1 gi|390938683|ref|YP_006402421.1| - 0.012 15.0 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 NMT1-like family VitK2_biosynth PF02621.9 gi|390938683|ref|YP_006402421.1| - 0.013 14.7 0.0 0.036 13.2 0.0 1.7 2 0 0 2 2 2 0 Menaquinone biosynthesis DUF2250 PF10007.4 gi|390938683|ref|YP_006402421.1| - 0.013 15.3 0.2 0.028 14.3 0.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|390938683|ref|YP_006402421.1| - 0.013 15.0 0.5 0.2 11.3 0.1 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family LysR_substrate PF03466.15 gi|390938683|ref|YP_006402421.1| - 0.019 14.0 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain B-block_TFIIIC PF04182.7 gi|390938683|ref|YP_006402421.1| - 0.019 14.8 0.3 0.046 13.5 0.2 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC PAX PF00292.13 gi|390938683|ref|YP_006402421.1| - 0.093 12.4 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 'Paired box' domain TBPIP PF07106.8 gi|390938683|ref|YP_006402421.1| - 0.1 12.1 0.1 0.18 11.3 0.1 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_IclR PF09339.5 gi|390938683|ref|YP_006402421.1| - 0.12 12.0 0.1 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Lipoprotein_9 PF03180.9 gi|390938683|ref|YP_006402421.1| - 0.13 11.1 0.0 0.23 10.3 0.0 1.4 1 0 0 1 1 1 0 NLPA lipoprotein GntR PF00392.16 gi|390938683|ref|YP_006402421.1| - 0.13 11.6 0.1 0.23 10.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RPA_C PF08784.6 gi|390938683|ref|YP_006402421.1| - 0.17 12.2 0.1 1 9.8 0.0 2.1 2 0 0 2 2 2 0 Replication protein A C terminal UPRTase PF14681.1 gi|390938684|ref|YP_006402422.1| - 1e-44 152.2 0.2 1.1e-44 152.0 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|390938684|ref|YP_006402422.1| - 1.3e-06 28.1 1.3 3e-06 26.9 0.9 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|390938684|ref|YP_006402422.1| - 0.00097 18.4 0.1 0.0015 17.8 0.0 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase Pribosyl_synth PF14572.1 gi|390938684|ref|YP_006402422.1| - 0.063 13.0 0.1 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain NTP_transferase PF00483.18 gi|390938685|ref|YP_006402423.1| - 4e-28 98.3 0.0 4.7e-28 98.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|390938685|ref|YP_006402423.1| - 1.2e-11 44.9 0.0 1.4e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain MatE PF01554.13 gi|390938686|ref|YP_006402424.1| - 5e-48 162.7 34.5 2.1e-31 108.7 5.0 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|390938686|ref|YP_006402424.1| - 6.1e-10 39.0 6.9 6.1e-10 39.0 4.8 4.5 1 1 4 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Glyco_tran_28_C PF04101.11 gi|390938687|ref|YP_006402425.1| - 1.9e-06 27.6 0.0 3.1e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Alg14 PF08660.6 gi|390938687|ref|YP_006402425.1| - 3.9e-06 26.9 0.0 7.4e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 Oligosaccharide biosynthesis protein Alg14 like Glyco_trans_1_3 PF13528.1 gi|390938687|ref|YP_006402425.1| - 9.1e-06 25.0 0.0 1.4e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 1 Glyco_trans_4_4 PF13579.1 gi|390938687|ref|YP_006402425.1| - 0.0038 17.3 0.1 0.039 14.1 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|390938687|ref|YP_006402425.1| - 0.038 13.8 0.0 0.19 11.5 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like Cation_efflux PF01545.16 gi|390938688|ref|YP_006402426.1| - 2.1e-33 115.6 15.2 2.3e-33 115.4 10.5 1.0 1 0 0 1 1 1 1 Cation efflux family IL34 PF15036.1 gi|390938689|ref|YP_006402427.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.5 1 1 0 1 1 1 0 Interleukin 34 PfkB PF00294.19 gi|390938691|ref|YP_006402429.1| - 3.9e-43 147.7 0.1 5.5e-43 147.2 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PNP_UDP_1 PF01048.15 gi|390938692|ref|YP_006402430.1| - 1.4e-36 125.6 0.3 1.7e-36 125.3 0.2 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Metallophos_2 PF12850.2 gi|390938693|ref|YP_006402431.1| - 3.7e-31 108.0 0.1 4.2e-31 107.9 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|390938693|ref|YP_006402431.1| - 6.1e-09 35.5 0.3 2.1e-07 30.5 0.2 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|390938693|ref|YP_006402431.1| - 0.005 16.0 0.0 0.11 11.6 0.0 2.1 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily HSP20 PF00011.16 gi|390938694|ref|YP_006402432.1| - 2.9e-10 39.8 1.6 1.6e-08 34.3 1.1 2.4 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|390938694|ref|YP_006402432.1| - 1.3e-07 31.4 0.1 1.7e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 GvpH CS PF04969.11 gi|390938694|ref|YP_006402432.1| - 1.1e-06 29.1 0.3 4.6e-06 27.0 0.3 1.8 2 0 0 2 2 2 1 CS domain DPCD PF14913.1 gi|390938694|ref|YP_006402432.1| - 0.12 11.4 0.1 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 DPCD protein family UPF0047 PF01894.12 gi|390938695|ref|YP_006402433.1| - 1e-33 115.6 0.1 1.2e-33 115.3 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 QRPTase_C PF01729.14 gi|390938696|ref|YP_006402434.1| - 8e-25 87.3 0.0 2.3e-24 85.8 0.0 1.7 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|390938696|ref|YP_006402434.1| - 4.6e-06 26.3 0.0 8.4e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain HAD_2 PF13419.1 gi|390938697|ref|YP_006402435.1| - 5.5e-06 26.7 0.2 7.5e-06 26.2 0.1 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF910 PF06014.6 gi|390938697|ref|YP_006402435.1| - 0.036 13.9 0.1 0.085 12.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF910) C-C_Bond_Lyase PF15617.1 gi|390938697|ref|YP_006402435.1| - 0.085 11.6 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 C-C_Bond_Lyase of the TIM-Barrel fold NTP_transf_2 PF01909.18 gi|390938698|ref|YP_006402436.1| - 0.028 14.7 0.1 0.088 13.1 0.0 1.9 2 0 0 2 2 2 0 Nucleotidyltransferase domain Metallophos_2 PF12850.2 gi|390938699|ref|YP_006402437.1| - 0.011 15.6 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Succ_CoA_lig PF13607.1 gi|390938700|ref|YP_006402438.1| - 4e-53 178.7 0.1 8.6e-53 177.6 0.1 1.6 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|390938700|ref|YP_006402438.1| - 1.7e-25 89.4 0.4 2.5e-24 85.6 0.1 2.6 3 1 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|390938700|ref|YP_006402438.1| - 2.8e-21 75.8 0.2 1.8e-20 73.2 0.1 2.4 2 0 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.12 gi|390938700|ref|YP_006402438.1| - 0.11 12.9 1.2 1.3 9.4 0.2 2.9 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent tRNA_bind PF01588.15 gi|390938701|ref|YP_006402439.1| - 9e-26 89.5 0.0 1e-25 89.3 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain TYW3 PF02676.9 gi|390938702|ref|YP_006402440.1| - 2.1e-41 141.3 0.0 2.6e-41 141.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 DUF2639 PF11121.3 gi|390938702|ref|YP_006402440.1| - 0.039 13.4 0.2 0.16 11.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2639) Sigma70_r1_1 PF03979.9 gi|390938702|ref|YP_006402440.1| - 0.12 12.3 0.2 0.27 11.1 0.1 1.6 1 1 0 1 1 1 0 Sigma-70 factor, region 1.1 AAA_assoc_C PF09821.4 gi|390938705|ref|YP_006402443.1| - 5.6e-08 33.0 0.1 1.5e-07 31.6 0.0 1.6 2 0 0 2 2 2 1 C-terminal AAA-associated domain DUF505 PF04458.7 gi|390938705|ref|YP_006402443.1| - 0.057 11.5 0.1 0.064 11.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) AAA_assoc_C PF09821.4 gi|390938706|ref|YP_006402444.1| - 2e-07 31.2 0.5 2.3e-07 31.0 0.4 1.0 1 0 0 1 1 1 1 C-terminal AAA-associated domain CoiA PF06054.6 gi|390938706|ref|YP_006402444.1| - 0.082 11.7 0.2 0.09 11.6 0.2 1.0 1 0 0 1 1 1 0 Competence protein CoiA-like family Aminotran_1_2 PF00155.16 gi|390938707|ref|YP_006402445.1| - 4.7e-66 223.1 0.0 5.7e-66 222.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|390938707|ref|YP_006402445.1| - 4.4e-07 28.5 0.0 6.5e-07 27.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|390938707|ref|YP_006402445.1| - 0.0011 17.8 0.0 0.0017 17.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.15 gi|390938707|ref|YP_006402445.1| - 0.008 14.7 0.1 0.28 9.6 0.0 2.7 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Radical_SAM PF04055.16 gi|390938707|ref|YP_006402445.1| - 0.027 14.6 0.3 2.7 8.1 0.1 2.5 1 1 1 2 2 2 0 Radical SAM superfamily Beta_elim_lyase PF01212.16 gi|390938707|ref|YP_006402445.1| - 0.035 13.2 0.0 0.089 11.9 0.0 1.6 1 1 0 1 1 1 0 Beta-eliminating lyase Epimerase PF01370.16 gi|390938708|ref|YP_006402446.1| - 5.3e-31 107.8 0.0 6.7e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|390938708|ref|YP_006402446.1| - 5.9e-16 58.2 0.0 7.9e-16 57.7 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|390938708|ref|YP_006402446.1| - 1.1e-11 44.0 0.0 1.4e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|390938708|ref|YP_006402446.1| - 1.1e-09 37.6 0.1 9.2e-09 34.6 0.0 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|390938708|ref|YP_006402446.1| - 6.4e-09 35.1 0.0 2.7e-07 29.7 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|390938708|ref|YP_006402446.1| - 1.7e-08 34.6 0.0 3.6e-08 33.6 0.0 1.6 2 0 0 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|390938708|ref|YP_006402446.1| - 5.1e-06 26.4 0.0 8.9e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|390938708|ref|YP_006402446.1| - 3.9e-05 23.0 0.0 0.00011 21.5 0.0 1.7 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|390938708|ref|YP_006402446.1| - 0.0028 17.3 0.0 0.0068 16.0 0.0 1.6 1 1 0 1 1 1 1 KR domain DapB_N PF01113.15 gi|390938708|ref|YP_006402446.1| - 0.012 15.5 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|390938708|ref|YP_006402446.1| - 0.092 13.0 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.11 gi|390938708|ref|YP_006402446.1| - 0.11 13.0 0.0 0.52 10.8 0.0 1.9 1 1 1 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Epimerase_Csub PF13950.1 gi|390938708|ref|YP_006402446.1| - 0.13 12.2 0.5 0.37 10.7 0.3 1.8 1 1 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Ribosomal_S30 PF04758.9 gi|390938709|ref|YP_006402447.1| - 4.3e-12 45.6 0.3 5.1e-12 45.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Nop PF01798.13 gi|390938710|ref|YP_006402448.1| - 4.4e-54 181.8 0.2 1e-53 180.6 0.1 1.7 2 0 0 2 2 2 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|390938710|ref|YP_006402448.1| - 6.2e-23 80.3 0.2 1.5e-22 79.0 0.1 1.7 1 0 0 1 1 1 1 NOSIC (NUC001) domain UBA PF00627.26 gi|390938710|ref|YP_006402448.1| - 0.084 12.7 0.1 0.32 10.9 0.0 2.1 2 0 0 2 2 2 0 UBA/TS-N domain Fibrillarin PF01269.12 gi|390938711|ref|YP_006402449.1| - 9.7e-100 332.1 0.0 1.1e-99 332.0 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|390938711|ref|YP_006402449.1| - 0.0011 18.5 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|390938711|ref|YP_006402449.1| - 0.0041 16.6 0.0 0.0064 16.0 0.0 1.5 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|390938711|ref|YP_006402449.1| - 0.082 12.9 0.0 0.77 9.8 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain HTH_3 PF01381.17 gi|390938712|ref|YP_006402450.1| - 3.1e-10 39.7 0.2 1e-09 38.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|390938712|ref|YP_006402450.1| - 1e-05 25.5 0.0 2.5e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|390938712|ref|YP_006402450.1| - 7.4e-05 22.7 0.1 0.00017 21.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|390938712|ref|YP_006402450.1| - 0.0021 18.2 0.0 0.0049 17.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|390938712|ref|YP_006402450.1| - 0.0054 16.2 0.4 0.018 14.5 0.0 2.0 2 0 0 2 2 2 1 MerR family regulatory protein HTH_11 PF08279.7 gi|390938712|ref|YP_006402450.1| - 0.0054 16.3 0.0 0.036 13.7 0.0 2.5 2 0 0 2 2 2 1 HTH domain Hjc PF01870.13 gi|390938712|ref|YP_006402450.1| - 0.012 15.1 1.7 0.044 13.3 0.0 2.4 3 0 0 3 3 3 0 Archaeal holliday junction resolvase (hjc) HTH_26 PF13443.1 gi|390938712|ref|YP_006402450.1| - 0.049 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF3933 PF13069.1 gi|390938712|ref|YP_006402450.1| - 0.05 13.2 0.5 0.25 11.0 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3933) HTH_Crp_2 PF13545.1 gi|390938712|ref|YP_006402450.1| - 0.083 12.7 0.0 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|390938712|ref|YP_006402450.1| - 0.096 12.3 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain NTPase_1 PF03266.10 gi|390938713|ref|YP_006402451.1| - 1.7e-48 164.5 0.1 2.4e-48 164.0 0.1 1.2 1 0 0 1 1 1 1 NTPase ArgK PF03308.11 gi|390938713|ref|YP_006402451.1| - 1.9e-05 23.6 0.1 7.4e-05 21.6 0.0 1.9 2 0 0 2 2 2 1 ArgK protein AAA_17 PF13207.1 gi|390938713|ref|YP_006402451.1| - 0.00017 22.3 0.1 0.00022 22.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|390938713|ref|YP_006402451.1| - 0.0003 21.1 0.2 0.00056 20.2 0.1 1.6 2 0 0 2 2 1 1 AAA domain AAA PF00004.24 gi|390938713|ref|YP_006402451.1| - 0.00033 20.8 0.0 0.00056 20.1 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|390938713|ref|YP_006402451.1| - 0.00034 20.5 0.2 0.00054 19.9 0.1 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase MobB PF03205.9 gi|390938713|ref|YP_006402451.1| - 0.00046 19.9 0.1 0.003 17.2 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|390938713|ref|YP_006402451.1| - 0.00056 20.0 0.1 0.0043 17.1 0.0 2.4 1 1 1 2 2 2 1 AAA domain NACHT PF05729.7 gi|390938713|ref|YP_006402451.1| - 0.0016 18.1 0.0 0.0029 17.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain KTI12 PF08433.5 gi|390938713|ref|YP_006402451.1| - 0.0027 16.9 0.0 0.0043 16.3 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 RNA_helicase PF00910.17 gi|390938713|ref|YP_006402451.1| - 0.0044 17.1 0.0 0.0078 16.3 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_5 PF07728.9 gi|390938713|ref|YP_006402451.1| - 0.0068 16.1 0.4 0.44 10.2 0.0 2.7 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|390938713|ref|YP_006402451.1| - 0.0093 15.9 0.1 0.042 13.8 0.1 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|390938713|ref|YP_006402451.1| - 0.0095 15.8 0.0 0.024 14.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|390938713|ref|YP_006402451.1| - 0.014 15.8 0.0 0.028 14.9 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein KAP_NTPase PF07693.9 gi|390938713|ref|YP_006402451.1| - 0.021 13.8 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_33 PF13671.1 gi|390938713|ref|YP_006402451.1| - 0.023 14.6 0.0 0.057 13.3 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|390938713|ref|YP_006402451.1| - 0.043 13.3 0.0 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF2478 PF10649.4 gi|390938713|ref|YP_006402451.1| - 0.045 13.0 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2478) AAA_10 PF12846.2 gi|390938713|ref|YP_006402451.1| - 0.05 13.0 0.0 0.16 11.4 0.0 1.8 1 1 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|390938713|ref|YP_006402451.1| - 0.055 12.6 0.0 0.074 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|390938713|ref|YP_006402451.1| - 0.07 12.5 0.1 0.15 11.5 0.1 1.8 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF473 PF04322.7 gi|390938713|ref|YP_006402451.1| - 0.077 12.6 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF473) Arch_ATPase PF01637.13 gi|390938713|ref|YP_006402451.1| - 0.12 12.0 0.1 0.22 11.2 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase DnaB_C PF03796.10 gi|390938713|ref|YP_006402451.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain FtsK_SpoIIIE PF01580.13 gi|390938713|ref|YP_006402451.1| - 0.14 11.6 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family TRM PF02005.11 gi|390938714|ref|YP_006402452.1| - 1.2e-75 254.8 0.0 1.4e-75 254.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|390938714|ref|YP_006402452.1| - 0.00058 19.4 0.0 0.00094 18.8 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|390938714|ref|YP_006402452.1| - 0.004 17.1 0.0 0.0064 16.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|390938714|ref|YP_006402452.1| - 0.0087 15.4 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|390938714|ref|YP_006402452.1| - 0.07 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF167 PF02594.11 gi|390938715|ref|YP_006402453.1| - 1.6e-14 53.5 0.1 2.2e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF1106 PF06523.6 gi|390938715|ref|YP_006402453.1| - 0.043 13.6 0.0 0.082 12.7 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1106) PH_BEACH PF14844.1 gi|390938715|ref|YP_006402453.1| - 0.083 12.7 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 PH domain associated with Beige/BEACH DUF2642 PF10842.3 gi|390938715|ref|YP_006402453.1| - 0.1 12.1 0.2 1.5 8.3 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2642) Zn-ribbon_8 PF09723.5 gi|390938716|ref|YP_006402454.1| - 0.00028 20.7 1.2 0.00051 19.9 0.8 1.4 1 0 0 1 1 1 1 Zinc ribbon domain UPF0547 PF10571.4 gi|390938716|ref|YP_006402454.1| - 0.0045 16.6 3.7 0.18 11.5 0.2 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 HTH_5 PF01022.15 gi|390938716|ref|YP_006402454.1| - 0.007 16.0 0.1 0.015 14.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family OrfB_Zn_ribbon PF07282.6 gi|390938716|ref|YP_006402454.1| - 0.042 13.5 1.4 0.068 12.8 1.0 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|390938716|ref|YP_006402454.1| - 0.046 13.4 1.0 0.054 13.1 0.7 1.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF3039 PF11238.3 gi|390938716|ref|YP_006402454.1| - 0.064 12.7 1.2 0.11 11.9 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) zinc_ribbon_5 PF13719.1 gi|390938716|ref|YP_006402454.1| - 0.12 12.0 4.4 4.4 6.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|390938716|ref|YP_006402454.1| - 0.12 12.2 1.1 0.26 11.1 0.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|390938716|ref|YP_006402454.1| - 0.13 11.9 1.3 0.72 9.5 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|390938716|ref|YP_006402454.1| - 0.15 11.3 0.8 14 5.0 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|390938716|ref|YP_006402454.1| - 0.25 11.0 4.8 6.6 6.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|390938716|ref|YP_006402454.1| - 0.47 10.2 2.7 0.93 9.3 0.2 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-Sec23_Sec24 PF04810.10 gi|390938716|ref|YP_006402454.1| - 0.75 9.4 6.1 1.5 8.4 0.4 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DUF35_N PF12172.3 gi|390938716|ref|YP_006402454.1| - 2.1 8.3 7.4 2.1 8.3 4.4 1.6 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|390938716|ref|YP_006402454.1| - 2.9 7.7 6.8 4.5 7.1 0.4 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Carla_C4 PF01623.12 gi|390938716|ref|YP_006402454.1| - 6 6.6 7.3 10 5.9 5.1 1.8 1 1 0 1 1 1 0 Carlavirus putative nucleic acid binding protein HAD PF12710.2 gi|390938717|ref|YP_006402455.1| - 4.5e-14 53.0 0.0 7.5e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|390938717|ref|YP_006402455.1| - 8.2e-11 42.4 1.4 1.1e-09 38.8 1.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|390938717|ref|YP_006402455.1| - 2.5e-09 37.8 0.0 1.8e-07 31.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|390938717|ref|YP_006402455.1| - 8.4e-07 28.8 0.0 3.4e-05 23.5 0.0 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|390938717|ref|YP_006402455.1| - 0.048 13.3 0.0 0.094 12.4 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like Parvo_NS1 PF01057.12 gi|390938717|ref|YP_006402455.1| - 0.049 12.4 0.0 0.064 12.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Hydrolase_6 PF13344.1 gi|390938717|ref|YP_006402455.1| - 0.05 13.4 0.1 0.45 10.4 0.1 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Clathrin PF00637.15 gi|390938718|ref|YP_006402456.1| - 0.031 13.8 0.2 0.085 12.4 0.1 1.8 1 1 0 1 1 1 0 Region in Clathrin and VPS MSC PF09402.5 gi|390938718|ref|YP_006402456.1| - 0.049 12.3 0.4 0.058 12.1 0.2 1.3 1 1 0 1 1 1 0 Man1-Src1p-C-terminal domain Radical_SAM PF04055.16 gi|390938719|ref|YP_006402457.1| - 5.9e-07 29.8 3.3 3.7e-05 23.9 1.2 3.4 2 2 1 3 3 3 1 Radical SAM superfamily MCE PF02470.15 gi|390938720|ref|YP_006402458.1| - 0.002 18.1 0.7 0.0028 17.6 0.5 1.6 1 1 0 1 1 1 1 mce related protein DUF1425 PF07233.7 gi|390938720|ref|YP_006402458.1| - 0.047 13.2 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1425) tRNA-synt_1e PF01406.14 gi|390938721|ref|YP_006402459.1| - 2.3e-119 398.0 0.0 2.8e-119 397.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|390938721|ref|YP_006402459.1| - 1.6e-13 50.1 1.5 1.9e-09 36.7 0.5 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|390938721|ref|YP_006402459.1| - 7.7e-08 32.4 0.1 2e-07 31.1 0.0 1.7 1 0 0 1 1 1 1 DALR domain tRNA-synt_1 PF00133.17 gi|390938721|ref|YP_006402459.1| - 2.3e-06 25.9 0.6 5.8e-05 21.2 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.16 gi|390938721|ref|YP_006402459.1| - 0.041 12.5 0.2 0.26 9.9 0.1 2.2 2 1 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1f PF01921.13 gi|390938721|ref|YP_006402459.1| - 0.064 11.9 0.2 0.2 10.2 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (K) PNP_UDP_1 PF01048.15 gi|390938722|ref|YP_006402460.1| - 9.2e-43 145.8 0.7 1.2e-42 145.5 0.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Adenosine_kin PF04008.9 gi|390938724|ref|YP_006402462.1| - 7.3e-75 249.6 0.3 8.3e-75 249.5 0.2 1.0 1 0 0 1 1 1 1 Adenosine specific kinase TRAM PF01938.15 gi|390938726|ref|YP_006402464.1| - 3e-05 23.7 0.5 4.4e-05 23.1 0.3 1.2 1 0 0 1 1 1 1 TRAM domain DUF2922 PF11148.3 gi|390938726|ref|YP_006402464.1| - 0.099 12.3 0.0 0.18 11.5 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2922) DUF1652 PF07865.6 gi|390938727|ref|YP_006402465.1| - 0.00074 19.0 0.1 0.00094 18.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1652) TrmB PF01978.14 gi|390938730|ref|YP_006402468.1| - 6.7e-08 32.1 1.0 1.5e-07 31.0 0.5 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|390938730|ref|YP_006402468.1| - 3.2e-07 29.9 0.5 1.2e-06 28.0 0.2 2.0 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|390938730|ref|YP_006402468.1| - 1.5e-06 27.7 0.2 3.1e-06 26.7 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|390938730|ref|YP_006402468.1| - 1.6e-06 27.3 0.2 3.4e-06 26.3 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|390938730|ref|YP_006402468.1| - 2.6e-06 26.9 0.2 7.9e-06 25.3 0.1 1.9 2 0 0 2 2 1 1 Homeodomain-like domain HTH_20 PF12840.2 gi|390938730|ref|YP_006402468.1| - 1.6e-05 24.6 0.1 4.1e-05 23.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|390938730|ref|YP_006402468.1| - 6.6e-05 22.7 0.1 0.00011 22.0 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|390938730|ref|YP_006402468.1| - 7.7e-05 22.1 0.1 0.00054 19.4 0.1 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|390938730|ref|YP_006402468.1| - 0.00014 21.7 0.1 0.00077 19.3 0.0 2.0 2 0 0 2 2 2 1 Transposase GntR PF00392.16 gi|390938730|ref|YP_006402468.1| - 0.00018 20.8 0.2 0.00064 19.1 0.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|390938730|ref|YP_006402468.1| - 0.00022 20.8 0.1 0.00036 20.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|390938730|ref|YP_006402468.1| - 0.00051 19.9 0.1 0.0011 18.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|390938730|ref|YP_006402468.1| - 0.00057 19.5 0.0 0.0012 18.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HrcA_DNA-bdg PF03444.10 gi|390938730|ref|YP_006402468.1| - 0.00074 18.9 0.2 0.0021 17.4 0.1 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TFIIE_alpha PF02002.12 gi|390938730|ref|YP_006402468.1| - 0.0011 18.4 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_29 PF13551.1 gi|390938730|ref|YP_006402468.1| - 0.0012 18.9 0.0 0.0025 17.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Rrf2 PF02082.15 gi|390938730|ref|YP_006402468.1| - 0.0014 18.7 0.2 0.003 17.6 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PaaX PF07848.7 gi|390938730|ref|YP_006402468.1| - 0.0014 18.5 0.2 0.0059 16.5 0.0 1.9 2 0 0 2 2 2 1 PaaX-like protein HTH_Tnp_ISL3 PF13542.1 gi|390938730|ref|YP_006402468.1| - 0.0019 17.3 0.0 0.0088 15.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Penicillinase_R PF03965.11 gi|390938730|ref|YP_006402468.1| - 0.0021 18.1 0.1 0.0033 17.4 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor GerE PF00196.14 gi|390938730|ref|YP_006402468.1| - 0.0023 17.1 0.1 0.004 16.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_27 PF13463.1 gi|390938730|ref|YP_006402468.1| - 0.0045 17.2 0.1 0.0089 16.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|390938730|ref|YP_006402468.1| - 0.005 17.0 0.2 0.014 15.6 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|390938730|ref|YP_006402468.1| - 0.0052 16.2 0.1 0.011 15.2 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_35 PF13693.1 gi|390938730|ref|YP_006402468.1| - 0.0073 16.0 0.1 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|390938730|ref|YP_006402468.1| - 0.008 15.9 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|390938730|ref|YP_006402468.1| - 0.0081 15.6 0.3 0.032 13.7 0.1 2.2 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain DUF3489 PF11994.3 gi|390938730|ref|YP_006402468.1| - 0.0093 15.8 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) Sigma70_r4 PF04545.11 gi|390938730|ref|YP_006402468.1| - 0.01 15.1 0.7 0.01 15.1 0.5 1.8 2 0 0 2 2 1 0 Sigma-70, region 4 IF2_N PF04760.10 gi|390938730|ref|YP_006402468.1| - 0.014 14.9 0.7 0.088 12.4 0.1 2.1 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region RPA_C PF08784.6 gi|390938730|ref|YP_006402468.1| - 0.017 15.5 0.0 0.029 14.7 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal DUF4423 PF14394.1 gi|390938730|ref|YP_006402468.1| - 0.036 13.5 0.0 0.057 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_36 PF13730.1 gi|390938730|ref|YP_006402468.1| - 0.039 14.0 0.0 0.08 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|390938730|ref|YP_006402468.1| - 0.041 13.9 0.1 0.067 13.2 0.1 1.4 1 0 0 1 1 1 0 Transposase DUF387 PF04079.11 gi|390938730|ref|YP_006402468.1| - 0.044 13.1 0.1 0.074 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) B-block_TFIIIC PF04182.7 gi|390938730|ref|YP_006402468.1| - 0.05 13.4 0.0 0.084 12.7 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC LexA_DNA_bind PF01726.11 gi|390938730|ref|YP_006402468.1| - 0.058 12.9 0.1 0.14 11.7 0.1 1.6 1 0 0 1 1 1 0 LexA DNA binding domain EAP30 PF04157.11 gi|390938730|ref|YP_006402468.1| - 0.071 12.2 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_IclR PF09339.5 gi|390938730|ref|YP_006402468.1| - 0.075 12.6 0.1 0.16 11.5 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain FeoC PF09012.5 gi|390938730|ref|YP_006402468.1| - 0.079 12.6 0.0 0.29 10.8 0.0 1.9 1 1 1 2 2 2 0 FeoC like transcriptional regulator DUF911 PF06023.7 gi|390938731|ref|YP_006402469.1| - 1.3e-72 244.4 0.0 1.5e-72 244.2 0.0 1.0 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) PDDEXK_1 PF12705.2 gi|390938731|ref|YP_006402469.1| - 4.1e-07 29.6 0.0 5.4e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|390938731|ref|YP_006402469.1| - 2e-06 27.8 0.0 0.012 15.5 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF83 Cas_Cas1 PF01867.11 gi|390938732|ref|YP_006402470.1| - 3e-64 216.8 0.0 3.6e-64 216.5 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Rop-like PF05082.8 gi|390938732|ref|YP_006402470.1| - 0.078 12.4 0.9 0.16 11.4 0.6 1.5 1 0 0 1 1 1 0 Rop-like CRISPR_Cas2 PF09827.4 gi|390938733|ref|YP_006402471.1| - 3e-14 52.9 0.1 3.4e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas4 PF01930.12 gi|390938734|ref|YP_006402472.1| - 1.2e-15 57.8 0.0 1.4e-15 57.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|390938734|ref|YP_006402472.1| - 0.012 14.9 0.0 0.11 11.8 0.0 2.0 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily HTH_20 PF12840.2 gi|390938735|ref|YP_006402473.1| - 4.2e-06 26.4 0.0 1.1e-05 25.1 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|390938735|ref|YP_006402473.1| - 0.00031 20.4 0.1 0.00077 19.1 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|390938735|ref|YP_006402473.1| - 0.0084 15.7 0.0 0.019 14.5 0.0 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|390938735|ref|YP_006402473.1| - 0.013 14.9 0.1 0.025 13.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|390938735|ref|YP_006402473.1| - 0.03 13.9 0.0 0.053 13.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain FUR PF01475.14 gi|390938735|ref|YP_006402473.1| - 0.038 13.9 0.0 0.44 10.4 0.0 2.2 2 0 0 2 2 2 0 Ferric uptake regulator family MarR PF01047.17 gi|390938735|ref|YP_006402473.1| - 0.042 13.5 0.1 0.16 11.7 0.0 2.1 1 1 1 2 2 2 0 MarR family DUF2250 PF10007.4 gi|390938735|ref|YP_006402473.1| - 0.075 12.9 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|390938735|ref|YP_006402473.1| - 0.076 12.7 0.0 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 MarR family YqfD PF06898.6 gi|390938736|ref|YP_006402474.1| - 0.006 15.3 0.7 0.007 15.1 0.5 1.1 1 0 0 1 1 1 1 Putative stage IV sporulation protein YqfD Cas_Csa5 PF09702.5 gi|390938736|ref|YP_006402474.1| - 0.025 14.6 0.1 0.04 13.9 0.1 1.5 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) YmgB PF10798.3 gi|390938736|ref|YP_006402474.1| - 0.31 10.8 2.4 0.29 10.9 0.6 1.8 2 0 0 2 2 2 0 Biofilm development protein YmgB/AriR DevR PF01905.11 gi|390938737|ref|YP_006402475.1| - 6.1e-65 218.7 0.0 7.8e-65 218.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Cas5d PF09704.5 gi|390938738|ref|YP_006402476.1| - 7.2e-06 25.7 0.1 6.7e-05 22.5 0.1 2.0 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_Cas5) WND PF07861.6 gi|390938739|ref|YP_006402477.1| - 0.021 13.8 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 WisP family N-Terminal Region TPD52 PF04201.10 gi|390938739|ref|YP_006402477.1| - 0.12 12.1 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Tumour protein D52 family DEAD PF00270.24 gi|390938740|ref|YP_006402478.1| - 8e-11 41.7 0.0 4.4e-10 39.3 0.0 2.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|390938740|ref|YP_006402478.1| - 7.9e-08 32.0 0.0 4.8e-07 29.5 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|390938740|ref|YP_006402478.1| - 2.2e-07 30.8 0.0 4.3e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|390938740|ref|YP_006402478.1| - 0.02 14.6 0.0 1.4 8.7 0.0 2.9 3 0 0 3 3 3 0 Part of AAA domain AAA_25 PF13481.1 gi|390938740|ref|YP_006402478.1| - 0.052 12.9 0.0 0.26 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain HD PF01966.17 gi|390938741|ref|YP_006402479.1| - 1.3e-05 25.1 0.1 2.4e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 HD domain DUF4626 PF15422.1 gi|390938741|ref|YP_006402479.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4626) Ferritin PF00210.19 gi|390938741|ref|YP_006402479.1| - 0.13 11.9 0.0 0.39 10.4 0.0 1.8 2 0 0 2 2 2 0 Ferritin-like domain DUF2276 PF10040.4 gi|390938742|ref|YP_006402480.1| - 6.3e-06 26.4 0.2 1.2e-05 25.5 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Beta-Casp PF10996.3 gi|390938742|ref|YP_006402480.1| - 0.063 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Beta-Casp domain Apolipoprotein PF01442.13 gi|390938744|ref|YP_006402482.1| - 3.7e-05 23.3 7.5 0.0032 17.0 3.3 2.4 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain RHH_1 PF01402.16 gi|390938744|ref|YP_006402482.1| - 0.00094 18.9 0.1 0.00094 18.9 0.1 4.8 5 1 0 5 5 4 1 Ribbon-helix-helix protein, copG family Baculo_PEP_C PF04513.7 gi|390938744|ref|YP_006402482.1| - 0.0012 18.7 0.2 0.32 10.8 0.0 2.7 2 1 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF892 PF05974.7 gi|390938744|ref|YP_006402482.1| - 0.0036 17.1 2.9 0.57 9.9 0.1 3.2 1 1 2 3 3 3 1 Domain of unknown function (DUF892) DUF496 PF04363.7 gi|390938744|ref|YP_006402482.1| - 0.0081 15.9 2.1 0.055 13.2 0.2 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF496) DUF2730 PF10805.3 gi|390938744|ref|YP_006402482.1| - 0.028 14.1 3.6 0.17 11.5 0.4 2.7 2 1 0 3 3 2 0 Protein of unknown function (DUF2730) COG2 PF06148.6 gi|390938744|ref|YP_006402482.1| - 0.039 13.8 8.7 1.1 9.1 0.9 3.9 2 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 CheZ PF04344.8 gi|390938744|ref|YP_006402482.1| - 0.058 13.0 2.1 0.52 9.9 0.1 2.6 1 1 2 3 3 3 0 Chemotaxis phosphatase, CheZ MutS_III PF05192.13 gi|390938744|ref|YP_006402482.1| - 0.1 12.3 1.8 0.31 10.8 1.2 1.9 1 1 0 1 1 1 0 MutS domain III Syntaxin_2 PF14523.1 gi|390938744|ref|YP_006402482.1| - 0.11 12.4 1.8 1.3 9.1 0.2 2.8 3 0 0 3 3 3 0 Syntaxin-like protein Spc97_Spc98 PF04130.8 gi|390938744|ref|YP_006402482.1| - 0.12 10.7 0.0 6.6 4.9 0.0 2.1 2 0 0 2 2 2 0 Spc97 / Spc98 family Atg14 PF10186.4 gi|390938744|ref|YP_006402482.1| - 0.14 11.0 9.3 0.23 10.3 3.8 2.0 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Hemerythrin PF01814.18 gi|390938744|ref|YP_006402482.1| - 0.15 12.2 4.4 1.5 9.0 1.3 3.1 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain DUF948 PF06103.6 gi|390938744|ref|YP_006402482.1| - 0.15 11.9 0.8 7.5 6.4 0.4 3.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF2937 PF11157.3 gi|390938744|ref|YP_006402482.1| - 0.16 11.2 1.9 1.4 8.2 0.0 2.7 2 1 0 3 3 3 0 Protein of unknown function (DUF2937) HTH_22 PF13309.1 gi|390938744|ref|YP_006402482.1| - 0.16 11.7 1.1 1.2 9.0 0.1 3.0 2 2 0 3 3 3 0 HTH domain NYD-SP28 PF14772.1 gi|390938744|ref|YP_006402482.1| - 0.18 11.9 5.8 0.23 11.5 1.0 2.7 3 0 0 3 3 2 0 Sperm tail HAMP PF00672.20 gi|390938744|ref|YP_006402482.1| - 0.21 11.7 2.0 0.85 9.8 0.1 2.7 3 1 0 3 3 2 0 HAMP domain Enkurin PF13864.1 gi|390938744|ref|YP_006402482.1| - 0.26 11.5 6.7 20 5.4 0.0 3.6 2 1 1 4 4 4 0 Calmodulin-binding Spc7 PF08317.6 gi|390938744|ref|YP_006402482.1| - 0.26 9.8 4.3 0.32 9.6 1.2 1.7 1 1 1 2 2 2 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|390938744|ref|YP_006402482.1| - 0.28 10.8 3.7 9.7 5.8 1.4 2.3 1 1 1 2 2 2 0 Mnd1 family HisKA PF00512.20 gi|390938744|ref|YP_006402482.1| - 0.34 10.9 8.0 8.7 6.4 1.5 3.9 2 1 0 3 3 3 0 His Kinase A (phospho-acceptor) domain DUF677 PF05055.7 gi|390938744|ref|YP_006402482.1| - 0.39 9.3 10.6 0.14 10.8 2.3 2.8 1 1 1 3 3 3 0 Protein of unknown function (DUF677) Mod_r PF07200.8 gi|390938744|ref|YP_006402482.1| - 0.55 10.1 6.1 0.7 9.8 0.9 2.5 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein ApoLp-III PF07464.6 gi|390938744|ref|YP_006402482.1| - 0.65 9.9 7.7 0.6 10.1 2.8 2.6 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Med4 PF10018.4 gi|390938744|ref|YP_006402482.1| - 0.72 9.2 3.7 0.21 11.0 0.6 1.6 2 1 0 2 2 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF883 PF05957.8 gi|390938744|ref|YP_006402482.1| - 0.79 10.1 14.0 1.1 9.6 1.3 3.8 2 1 3 5 5 5 0 Bacterial protein of unknown function (DUF883) Vps53_N PF04100.7 gi|390938744|ref|YP_006402482.1| - 0.82 8.3 4.4 0.71 8.5 1.0 2.0 1 1 1 2 2 2 0 Vps53-like, N-terminal ISG65-75 PF11727.3 gi|390938744|ref|YP_006402482.1| - 1.2 8.1 8.9 0.53 9.2 0.2 2.5 1 1 1 2 2 2 0 Invariant surface glycoprotein Dak2 PF02734.12 gi|390938744|ref|YP_006402482.1| - 2.2 7.9 4.8 10 5.7 0.1 2.7 1 1 1 2 2 2 0 DAK2 domain FlgN PF05130.7 gi|390938744|ref|YP_006402482.1| - 4.4 7.5 9.7 52 4.0 0.0 2.9 2 1 0 2 2 2 0 FlgN protein SWI-SNF_Ssr4 PF08549.5 gi|390938744|ref|YP_006402482.1| - 5.8 5.1 5.6 6.6 4.9 3.9 1.2 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1750) Latarcin PF10279.4 gi|390938744|ref|YP_006402482.1| - 6.5 7.0 6.6 33 4.7 1.8 3.2 2 1 0 2 2 2 0 Latarcin precursor HSCB_C PF07743.8 gi|390938744|ref|YP_006402482.1| - 7.7 7.0 12.4 1.3 9.5 0.4 3.9 2 2 1 3 3 3 0 HSCB C-terminal oligomerisation domain DUF2203 PF09969.4 gi|390938744|ref|YP_006402482.1| - 9.8 6.4 7.4 14 5.8 1.1 3.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Arch_ATPase PF01637.13 gi|390938745|ref|YP_006402483.1| - 2.7e-34 118.9 0.1 4.7e-34 118.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|390938745|ref|YP_006402483.1| - 6.7e-12 45.4 0.1 7.5e-10 38.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|390938745|ref|YP_006402483.1| - 6.6e-10 39.2 0.0 1.6e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|390938745|ref|YP_006402483.1| - 2.2e-07 31.0 0.0 9.9e-07 28.9 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|390938745|ref|YP_006402483.1| - 0.00085 19.5 0.0 0.0026 17.9 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HAD PF12710.2 gi|390938747|ref|YP_006402485.1| - 1.3e-05 25.4 0.0 5.1e-05 23.5 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|390938747|ref|YP_006402485.1| - 0.00015 21.9 0.0 0.0037 17.5 0.0 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|390938747|ref|YP_006402485.1| - 0.0012 19.2 0.0 0.15 12.4 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|390938747|ref|YP_006402485.1| - 0.0081 15.7 0.0 0.022 14.3 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|390938747|ref|YP_006402485.1| - 0.015 14.2 0.0 0.024 13.5 0.0 1.3 1 0 0 1 1 1 0 Trehalose-phosphatase Glycos_transf_1 PF00534.15 gi|390938749|ref|YP_006402487.1| - 1.9e-26 92.5 0.0 9.4e-26 90.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|390938749|ref|YP_006402487.1| - 5.8e-12 45.9 0.0 3.8e-09 36.8 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|390938749|ref|YP_006402487.1| - 6.1e-08 32.8 0.0 1.3e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|390938749|ref|YP_006402487.1| - 0.0071 16.5 0.1 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF2173 PF09941.4 gi|390938749|ref|YP_006402487.1| - 0.087 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) Radical_SAM PF04055.16 gi|390938749|ref|YP_006402487.1| - 0.14 12.3 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Radical SAM superfamily Gram_pos_anchor PF00746.16 gi|390938751|ref|YP_006402489.1| - 0.064 13.0 0.3 0.064 13.0 0.2 3.2 3 0 0 3 3 3 0 Gram positive anchor NfeD PF01957.13 gi|390938751|ref|YP_006402489.1| - 1.2 9.2 11.4 1.8 8.6 7.9 1.4 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF4231 PF14015.1 gi|390938751|ref|YP_006402489.1| - 1.4 8.9 5.3 0.99 9.4 2.7 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) YtpI PF14007.1 gi|390938751|ref|YP_006402489.1| - 1.6 8.7 6.5 0.5 10.3 1.7 1.9 2 0 0 2 2 2 0 YtpI-like protein DUF4282 PF14110.1 gi|390938751|ref|YP_006402489.1| - 4.8 7.4 13.4 18 5.5 9.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) DUF2976 PF11190.3 gi|390938751|ref|YP_006402489.1| - 6.4 6.3 8.6 8.5 5.9 5.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) Yip1 PF04893.12 gi|390938751|ref|YP_006402489.1| - 7 6.1 14.9 8.4 5.8 10.3 1.1 1 0 0 1 1 1 0 Yip1 domain DUF2614 PF11023.3 gi|390938751|ref|YP_006402489.1| - 9.6 6.0 10.9 8.4 6.2 2.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2614) Potass_KdpF PF09604.5 gi|390938752|ref|YP_006402490.1| - 5.1 7.0 6.3 12 5.8 4.4 1.8 1 0 0 1 1 1 0 F subunit of K+-transporting ATPase (Potass_KdpF) TFIIB PF00382.14 gi|390938753|ref|YP_006402491.1| - 5.3e-18 64.6 0.0 2.5e-10 40.0 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|390938753|ref|YP_006402491.1| - 8.4e-13 47.4 1.0 1.8e-12 46.3 0.7 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.12 gi|390938753|ref|YP_006402491.1| - 0.00027 20.3 0.7 0.00046 19.6 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.1 gi|390938753|ref|YP_006402491.1| - 0.0083 16.4 0.6 0.016 15.5 0.4 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar DZR PF12773.2 gi|390938753|ref|YP_006402491.1| - 0.021 14.6 0.3 0.032 14.0 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Glyco_hydro_20b PF02838.10 gi|390938753|ref|YP_006402491.1| - 0.038 14.5 0.6 1.4 9.4 0.4 2.3 1 1 0 1 1 1 0 Glycosyl hydrolase family 20, domain 2 OrfB_Zn_ribbon PF07282.6 gi|390938753|ref|YP_006402491.1| - 0.047 13.3 0.5 0.11 12.1 0.3 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|390938753|ref|YP_006402491.1| - 0.053 13.3 0.3 0.094 12.5 0.2 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|390938753|ref|YP_006402491.1| - 0.065 13.0 1.8 0.12 12.1 1.2 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Cyclin_C PF02984.14 gi|390938753|ref|YP_006402491.1| - 0.13 12.2 0.0 0.48 10.3 0.0 1.9 2 1 1 3 3 3 0 Cyclin, C-terminal domain zf-ribbon_3 PF13248.1 gi|390938753|ref|YP_006402491.1| - 0.38 10.0 4.6 2.9 7.2 3.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|390938753|ref|YP_006402491.1| - 0.47 9.9 3.5 0.88 9.1 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|390938753|ref|YP_006402491.1| - 0.58 10.0 4.4 0.18 11.7 0.8 1.8 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-Sec23_Sec24 PF04810.10 gi|390938753|ref|YP_006402491.1| - 0.76 9.3 3.0 12 5.5 1.1 2.8 2 1 0 2 2 2 0 Sec23/Sec24 zinc finger Antimicrobial19 PF08225.6 gi|390938753|ref|YP_006402491.1| - 8.3 5.9 6.0 1.1 8.7 0.1 2.5 3 0 0 3 3 3 0 Pseudin antimicrobial peptide Gar1 PF04410.9 gi|390938754|ref|YP_006402492.1| - 7.8e-07 28.6 0.1 9.3e-07 28.4 0.1 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|390938754|ref|YP_006402492.1| - 0.0025 17.6 0.9 0.0035 17.1 0.4 1.5 1 1 0 1 1 1 1 PRC-barrel domain SRP19 PF01922.12 gi|390938756|ref|YP_006402494.1| - 1.1e-25 89.9 0.3 1.4e-25 89.6 0.2 1.1 1 0 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.17 gi|390938757|ref|YP_006402495.1| - 3.5e-33 114.5 0.2 3.9e-33 114.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Spiralin PF05215.8 gi|390938757|ref|YP_006402495.1| - 0.035 13.2 0.6 0.038 13.1 0.4 1.1 1 0 0 1 1 1 0 Spiralin Prenyltransf PF01255.14 gi|390938758|ref|YP_006402496.1| - 1e-79 266.7 0.1 1.3e-79 266.4 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF3839 PF12943.2 gi|390938758|ref|YP_006402496.1| - 0.034 13.3 0.0 0.049 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3839) DUF3584 PF12128.3 gi|390938759|ref|YP_006402497.1| - 6.1e-09 33.8 36.8 7.5e-09 33.5 25.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF948 PF06103.6 gi|390938759|ref|YP_006402497.1| - 1.3e-08 34.6 17.8 5.6e-07 29.3 1.3 4.2 3 1 1 4 4 4 2 Bacterial protein of unknown function (DUF948) IncA PF04156.9 gi|390938759|ref|YP_006402497.1| - 2.3e-08 33.8 52.2 0.00043 19.9 18.8 3.1 1 1 1 2 2 2 2 IncA protein HOOK PF05622.7 gi|390938759|ref|YP_006402497.1| - 9.6e-06 23.7 43.5 1.2e-05 23.4 30.2 1.0 1 0 0 1 1 1 1 HOOK protein Reo_sigmaC PF04582.7 gi|390938759|ref|YP_006402497.1| - 2.3e-05 23.7 8.1 0.00014 21.1 1.8 2.2 1 1 1 2 2 2 1 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|390938759|ref|YP_006402497.1| - 2.6e-05 23.0 50.0 0.00041 19.1 10.3 3.1 1 1 2 3 3 3 2 Spc7 kinetochore protein Atg14 PF10186.4 gi|390938759|ref|YP_006402497.1| - 0.00014 20.9 46.3 0.001 18.1 10.9 2.2 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|390938759|ref|YP_006402497.1| - 0.00018 20.6 42.3 0.0084 15.1 9.0 2.3 1 1 0 2 2 2 2 Autophagy protein Apg6 AAA_13 PF13166.1 gi|390938759|ref|YP_006402497.1| - 0.00019 20.0 40.6 0.018 13.5 10.6 2.2 1 1 1 2 2 2 2 AAA domain CENP-F_leu_zip PF10473.4 gi|390938759|ref|YP_006402497.1| - 0.00027 20.8 56.4 0.079 12.8 5.0 4.1 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.7 gi|390938759|ref|YP_006402497.1| - 0.00056 19.7 16.4 0.0026 17.6 3.2 3.1 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.1 gi|390938759|ref|YP_006402497.1| - 0.00072 18.7 52.3 0.37 9.9 15.3 3.2 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding AAA_27 PF13514.1 gi|390938759|ref|YP_006402497.1| - 0.0019 15.9 36.5 0.0017 16.1 22.1 1.6 1 1 0 1 1 1 1 AAA domain TMF_TATA_bd PF12325.3 gi|390938759|ref|YP_006402497.1| - 0.0022 17.6 2.2 0.0022 17.6 1.5 4.3 1 1 3 4 4 4 2 TATA element modulatory factor 1 TATA binding Laminin_I PF06008.9 gi|390938759|ref|YP_006402497.1| - 0.0027 17.0 37.8 0.01 15.1 2.4 3.2 1 1 2 3 3 3 2 Laminin Domain I TBPIP PF07106.8 gi|390938759|ref|YP_006402497.1| - 0.0035 16.9 49.2 0.05 13.1 11.5 4.0 1 1 3 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MscS_porin PF12795.2 gi|390938759|ref|YP_006402497.1| - 0.0042 16.4 38.4 0.36 10.0 5.9 3.1 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain Seryl_tRNA_N PF02403.17 gi|390938759|ref|YP_006402497.1| - 0.0087 16.0 4.9 0.0087 16.0 3.4 4.9 2 2 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain ATG16 PF08614.6 gi|390938759|ref|YP_006402497.1| - 0.011 15.5 12.7 0.011 15.5 8.8 4.2 1 1 4 5 5 4 0 Autophagy protein 16 (ATG16) Med4 PF10018.4 gi|390938759|ref|YP_006402497.1| - 0.011 15.0 4.7 0.011 15.0 3.2 4.0 2 2 1 3 3 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Nup54 PF13874.1 gi|390938759|ref|YP_006402497.1| - 0.013 15.2 3.0 0.013 15.2 2.1 3.3 1 1 3 4 4 3 0 Nucleoporin complex subunit 54 CCDC155 PF14662.1 gi|390938759|ref|YP_006402497.1| - 0.014 14.9 5.6 0.014 14.9 3.9 3.0 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 WXG100 PF06013.7 gi|390938759|ref|YP_006402497.1| - 0.015 15.3 7.2 0.28 11.1 0.2 3.9 3 2 0 3 3 2 0 Proteins of 100 residues with WXG Mnd1 PF03962.10 gi|390938759|ref|YP_006402497.1| - 0.015 14.9 42.9 0.088 12.4 3.5 3.7 1 1 2 3 3 3 0 Mnd1 family Spectrin PF00435.16 gi|390938759|ref|YP_006402497.1| - 0.017 15.4 28.7 0.17 12.1 0.9 3.8 1 1 1 3 3 3 0 Spectrin repeat NPV_P10 PF05531.7 gi|390938759|ref|YP_006402497.1| - 0.018 15.2 19.4 3.9 7.8 1.4 4.4 1 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF869 PF05911.6 gi|390938759|ref|YP_006402497.1| - 0.018 13.2 39.7 0.0071 14.6 7.8 2.8 1 1 2 3 3 3 0 Plant protein of unknown function (DUF869) Syntaxin-6_N PF09177.6 gi|390938759|ref|YP_006402497.1| - 0.032 14.6 31.3 1.1 9.7 0.8 4.7 1 1 2 4 4 4 0 Syntaxin 6, N-terminal DUF972 PF06156.8 gi|390938759|ref|YP_006402497.1| - 0.045 14.1 43.1 0.15 12.4 0.4 5.1 2 2 3 5 5 5 0 Protein of unknown function (DUF972) TPR_MLP1_2 PF07926.7 gi|390938759|ref|YP_006402497.1| - 0.055 13.2 47.6 0.21 11.3 3.6 4.1 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Filament PF00038.16 gi|390938759|ref|YP_006402497.1| - 0.081 12.3 44.4 0.043 13.2 10.5 2.8 1 1 2 3 3 2 0 Intermediate filament protein MbeD_MobD PF04899.7 gi|390938759|ref|YP_006402497.1| - 0.15 11.9 9.8 2.5 8.0 0.1 4.4 3 1 0 3 3 3 0 MbeD/MobD like SpaB_C PF14028.1 gi|390938759|ref|YP_006402497.1| - 0.17 11.4 2.3 0.18 11.3 0.8 1.6 2 0 0 2 2 2 0 SpaB C-terminal domain LXG PF04740.7 gi|390938759|ref|YP_006402497.1| - 0.17 11.6 26.2 0.041 13.6 3.2 3.7 1 1 2 3 3 3 0 LXG domain of WXG superfamily IFT57 PF10498.4 gi|390938759|ref|YP_006402497.1| - 0.18 10.5 39.6 0.075 11.7 8.7 2.5 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Laminin_II PF06009.7 gi|390938759|ref|YP_006402497.1| - 0.19 11.4 36.3 0.12 12.1 4.9 3.9 1 1 2 3 3 2 0 Laminin Domain II FliD_N PF02465.13 gi|390938759|ref|YP_006402497.1| - 0.22 11.8 21.8 0.22 11.8 1.3 4.5 2 2 2 5 5 4 0 Flagellar hook-associated protein 2 N-terminus DUF1664 PF07889.7 gi|390938759|ref|YP_006402497.1| - 0.35 10.6 28.5 0.086 12.6 1.9 4.2 1 1 2 4 4 4 0 Protein of unknown function (DUF1664) DUF4167 PF13763.1 gi|390938759|ref|YP_006402497.1| - 0.36 10.8 4.9 6.3 6.9 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4167) DUF2968 PF11180.3 gi|390938759|ref|YP_006402497.1| - 0.37 10.1 27.3 0.64 9.3 1.3 3.7 1 1 3 4 4 4 0 Protein of unknown function (DUF2968) DUF812 PF05667.6 gi|390938759|ref|YP_006402497.1| - 0.44 9.0 48.4 0.21 10.0 8.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF812) WEMBL PF05701.6 gi|390938759|ref|YP_006402497.1| - 0.63 8.4 49.3 25 3.1 34.0 2.9 1 1 0 1 1 1 0 Weak chloroplast movement under blue light ArdA PF07275.6 gi|390938759|ref|YP_006402497.1| - 0.69 10.1 7.6 2.8 8.1 0.9 2.8 1 1 2 3 3 3 0 Antirestriction protein (ArdA) COG6 PF06419.6 gi|390938759|ref|YP_006402497.1| - 0.71 7.9 35.4 0.019 13.0 5.2 3.1 2 1 1 3 3 3 0 Conserved oligomeric complex COG6 DUF4201 PF13870.1 gi|390938759|ref|YP_006402497.1| - 0.76 9.1 52.7 0.39 10.1 12.5 3.1 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) YscO PF07321.7 gi|390938759|ref|YP_006402497.1| - 0.92 9.3 41.9 0.41 10.4 0.4 3.6 1 1 1 3 3 3 0 Type III secretion protein YscO ALIX_LYPXL_bnd PF13949.1 gi|390938759|ref|YP_006402497.1| - 1.1 8.1 48.8 2.5 6.9 5.4 4.2 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV DUF4559 PF15112.1 gi|390938759|ref|YP_006402497.1| - 1.1 8.3 29.4 2.1 7.4 7.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) DUF4200 PF13863.1 gi|390938759|ref|YP_006402497.1| - 1.2 9.1 53.9 6.5 6.7 14.2 5.3 1 1 3 4 4 4 0 Domain of unknown function (DUF4200) DUF342 PF03961.8 gi|390938759|ref|YP_006402497.1| - 1.6 7.0 47.0 0.037 12.4 7.5 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF342) ADIP PF11559.3 gi|390938759|ref|YP_006402497.1| - 2.1 8.2 46.2 0.83 9.5 5.7 4.0 1 1 3 4 4 4 0 Afadin- and alpha -actinin-Binding OGG_N PF07934.7 gi|390938759|ref|YP_006402497.1| - 2.2 8.2 10.0 0.2 11.5 1.0 2.4 2 1 0 2 2 2 0 8-oxoguanine DNA glycosylase, N-terminal domain MCPsignal PF00015.16 gi|390938759|ref|YP_006402497.1| - 2.2 7.7 16.7 5.3 6.5 4.5 3.0 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DivIC PF04977.10 gi|390938759|ref|YP_006402497.1| - 2.5 7.6 42.9 0.1 12.1 2.3 5.7 2 2 3 5 5 5 0 Septum formation initiator Cast PF10174.4 gi|390938759|ref|YP_006402497.1| - 3 5.7 52.4 8.8 4.2 18.0 2.8 1 1 1 2 2 2 0 RIM-binding protein of the cytomatrix active zone DUF749 PF05370.6 gi|390938759|ref|YP_006402497.1| - 3.5 7.6 12.5 4.5 7.2 0.4 3.9 2 1 0 2 2 2 0 Domain of unknown function (DUF749) DUF2408 PF10303.4 gi|390938759|ref|YP_006402497.1| - 4.9 7.2 30.6 1.6 8.8 7.2 2.9 1 1 2 3 3 2 0 Protein of unknown function (DUF2408) Allexi_40kDa PF05549.6 gi|390938759|ref|YP_006402497.1| - 5.3 6.2 22.0 0.2 10.9 1.6 3.1 1 1 3 4 4 4 0 Allexivirus 40kDa protein DUF2730 PF10805.3 gi|390938759|ref|YP_006402497.1| - 8.5 6.1 29.9 0.32 10.7 1.9 4.8 1 1 3 4 4 3 0 Protein of unknown function (DUF2730) COG5 PF10392.4 gi|390938759|ref|YP_006402497.1| - 8.9 6.2 31.3 9.1 6.2 1.5 4.1 1 1 3 4 4 4 0 Golgi transport complex subunit 5 ATP-grasp_5 PF13549.1 gi|390938760|ref|YP_006402498.1| - 6.5e-82 274.0 0.2 7.3e-82 273.8 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|390938760|ref|YP_006402498.1| - 1.4e-06 27.8 0.3 2.2e-06 27.1 0.2 1.5 1 1 0 1 1 1 1 ATP-grasp domain ADH_zinc_N PF00107.21 gi|390938760|ref|YP_006402498.1| - 0.096 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Succ_CoA_lig PF13607.1 gi|390938761|ref|YP_006402499.1| - 2.2e-52 176.2 1.8 1.8e-51 173.4 0.2 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|390938761|ref|YP_006402499.1| - 1.3e-29 102.7 0.0 6.6e-28 97.2 0.0 2.5 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|390938761|ref|YP_006402499.1| - 6.6e-16 58.6 0.1 2.6e-15 56.6 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|390938761|ref|YP_006402499.1| - 0.0067 16.9 0.0 2.1 8.8 0.0 3.2 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|390938761|ref|YP_006402499.1| - 0.011 16.1 0.1 3.6 8.0 0.0 3.7 4 1 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent Peripla_BP_3 PF13377.1 gi|390938761|ref|YP_006402499.1| - 0.024 14.6 0.0 0.48 10.4 0.0 2.6 3 0 0 3 3 3 0 Periplasmic binding protein-like domain Ferrochelatase PF00762.14 gi|390938761|ref|YP_006402499.1| - 0.047 12.6 0.0 0.09 11.7 0.0 1.3 1 0 0 1 1 1 0 Ferrochelatase DEDD_Tnp_IS110 PF01548.12 gi|390938761|ref|YP_006402499.1| - 0.16 11.6 0.0 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Transposase Chromate_transp PF02417.10 gi|390938762|ref|YP_006402500.1| - 4.6e-46 156.4 18.6 5.2e-46 156.3 12.9 1.0 1 0 0 1 1 1 1 Chromate transporter BLOC1_2 PF10046.4 gi|390938763|ref|YP_006402501.1| - 0.00032 20.7 8.1 0.017 15.2 2.9 2.5 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 BDV_P24 PF06595.6 gi|390938763|ref|YP_006402501.1| - 0.00085 19.1 2.4 0.0012 18.7 1.7 1.1 1 0 0 1 1 1 1 Borna disease virus P24 protein Imm3 PF14425.1 gi|390938763|ref|YP_006402501.1| - 0.0051 16.7 1.5 0.0099 15.8 1.0 1.5 1 0 0 1 1 1 1 Immunity protein Imm3 PRC PF05239.11 gi|390938763|ref|YP_006402501.1| - 0.0097 15.7 1.3 0.016 15.0 0.2 1.8 2 0 0 2 2 2 1 PRC-barrel domain DapH_N PF08503.5 gi|390938763|ref|YP_006402501.1| - 0.012 15.7 4.0 1.2 9.2 0.1 3.2 1 1 2 3 3 3 0 Tetrahydrodipicolinate succinyltransferase N-terminal Integrin_beta PF00362.13 gi|390938763|ref|YP_006402501.1| - 0.02 13.8 0.1 0.021 13.7 0.1 1.3 1 0 0 1 1 1 0 Integrin, beta chain Baculo_PEP_C PF04513.7 gi|390938763|ref|YP_006402501.1| - 0.034 13.9 0.2 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus T2SF PF00482.18 gi|390938763|ref|YP_006402501.1| - 0.063 13.1 0.2 0.12 12.3 0.1 1.5 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F DNA_primase_lrg PF04104.9 gi|390938763|ref|YP_006402501.1| - 0.079 12.2 0.9 0.1 11.8 0.6 1.3 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit V_ATPase_I PF01496.14 gi|390938763|ref|YP_006402501.1| - 0.15 9.8 3.2 0.19 9.5 2.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Peptidase_C65 PF10275.4 gi|390938763|ref|YP_006402501.1| - 0.15 11.3 2.2 0.27 10.5 1.3 1.6 1 1 0 1 1 1 0 Peptidase C65 Otubain Spc7 PF08317.6 gi|390938763|ref|YP_006402501.1| - 0.17 10.5 10.0 0.096 11.3 4.1 1.9 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF724 PF05266.9 gi|390938763|ref|YP_006402501.1| - 0.2 11.2 7.9 0.078 12.5 3.7 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF2721 PF11026.3 gi|390938763|ref|YP_006402501.1| - 0.21 11.2 0.7 0.59 9.7 0.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) GvpG PF05120.7 gi|390938763|ref|YP_006402501.1| - 0.22 11.3 1.8 1.6 8.5 0.0 2.6 1 1 1 2 2 2 0 Gas vesicle protein G Syntaxin-6_N PF09177.6 gi|390938763|ref|YP_006402501.1| - 0.22 11.9 2.5 1.1 9.7 1.6 2.3 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Prefoldin PF02996.12 gi|390938763|ref|YP_006402501.1| - 0.25 11.0 7.3 2.7 7.6 0.0 3.0 2 1 1 3 3 3 0 Prefoldin subunit DUF883 PF05957.8 gi|390938763|ref|YP_006402501.1| - 0.3 11.4 3.9 0.17 12.3 1.3 1.7 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF883) HAUS-augmin3 PF14932.1 gi|390938763|ref|YP_006402501.1| - 0.32 10.1 4.8 0.082 12.0 1.3 1.4 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Fib_alpha PF08702.5 gi|390938763|ref|YP_006402501.1| - 1.2 9.3 4.1 1.6 8.8 1.9 1.8 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4140 PF13600.1 gi|390938763|ref|YP_006402501.1| - 1.4 9.4 4.5 2.1 8.8 0.1 2.7 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) CENP-Q PF13094.1 gi|390938763|ref|YP_006402501.1| - 1.5 8.8 7.4 2.3 8.2 5.2 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF342 PF03961.8 gi|390938763|ref|YP_006402501.1| - 2.2 6.6 9.9 3.6 5.8 6.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF342) IncA PF04156.9 gi|390938763|ref|YP_006402501.1| - 9 5.8 7.7 15 5.0 5.4 1.4 1 1 0 1 1 1 0 IncA protein PmbA_TldD PF01523.11 gi|390938764|ref|YP_006402502.1| - 5.8e-57 193.1 0.0 9.6e-57 192.4 0.0 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Tektin PF03148.9 gi|390938764|ref|YP_006402502.1| - 0.27 9.7 0.0 0.43 9.0 0.0 1.2 1 0 0 1 1 1 0 Tektin family PmbA_TldD PF01523.11 gi|390938765|ref|YP_006402503.1| - 7.9e-55 186.1 0.0 1.1e-54 185.6 0.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF3096 PF11295.3 gi|390938766|ref|YP_006402504.1| - 0.00017 21.0 12.5 0.00022 20.6 7.7 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF3096) DUF308 PF03729.8 gi|390938766|ref|YP_006402504.1| - 0.0073 16.2 10.3 0.037 13.9 6.9 1.9 1 1 1 2 2 2 2 Short repeat of unknown function (DUF308) COPI_assoc PF08507.5 gi|390938766|ref|YP_006402504.1| - 0.017 14.7 4.2 0.019 14.6 2.9 1.1 1 0 0 1 1 1 0 COPI associated protein Neurensin PF14927.1 gi|390938766|ref|YP_006402504.1| - 0.029 13.7 0.4 0.031 13.6 0.3 1.1 1 0 0 1 1 1 0 Neurensin DUF872 PF05915.7 gi|390938766|ref|YP_006402504.1| - 0.12 12.2 1.4 0.16 11.8 0.9 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) YtpI PF14007.1 gi|390938766|ref|YP_006402504.1| - 0.44 10.5 3.7 0.74 9.7 2.6 1.4 1 1 0 1 1 1 0 YtpI-like protein DUF2892 PF11127.3 gi|390938766|ref|YP_006402504.1| - 0.75 9.6 2.9 0.99 9.2 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) SdpI PF13630.1 gi|390938766|ref|YP_006402504.1| - 1.6 8.5 5.8 2 8.1 4.0 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family PhoU PF01895.14 gi|390938767|ref|YP_006402505.1| - 5.3e-24 84.4 14.0 8.1e-17 61.4 5.5 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|390938767|ref|YP_006402505.1| - 2.2e-10 40.0 0.0 4.7e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE IpaB_EvcA PF03278.8 gi|390938767|ref|YP_006402505.1| - 0.049 12.8 0.0 0.12 11.5 0.0 1.6 1 0 0 1 1 1 0 IpaB/EvcA family Nop14 PF04147.7 gi|390938767|ref|YP_006402505.1| - 0.068 11.0 0.1 0.095 10.6 0.1 1.1 1 0 0 1 1 1 0 Nop14-like family ParBc PF02195.13 gi|390938768|ref|YP_006402506.1| - 3.7e-08 33.3 0.0 0.00083 19.4 0.0 2.5 2 0 0 2 2 2 2 ParB-like nuclease domain ParBc_2 PF08857.6 gi|390938768|ref|YP_006402506.1| - 5.8e-06 26.2 0.2 0.019 14.7 0.0 2.4 2 1 0 2 2 2 2 Putative ParB-like nuclease DUF2897 PF11446.3 gi|390938769|ref|YP_006402507.1| - 4.6 7.1 8.7 6.4 6.6 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2897) DUF134 PF02001.11 gi|390938770|ref|YP_006402508.1| - 1.3e-14 53.9 0.0 1.7e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 HTH_23 PF13384.1 gi|390938770|ref|YP_006402508.1| - 9.3e-05 21.9 0.2 0.00022 20.7 0.1 1.6 1 1 1 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|390938770|ref|YP_006402508.1| - 0.00011 21.5 0.1 0.00016 21.0 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.6 gi|390938770|ref|YP_006402508.1| - 0.00024 20.8 0.1 0.00029 20.5 0.1 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_28 PF13518.1 gi|390938770|ref|YP_006402508.1| - 0.00084 19.2 0.1 0.0013 18.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|390938770|ref|YP_006402508.1| - 0.0028 16.9 0.1 0.0037 16.5 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 DUF1492 PF07374.6 gi|390938770|ref|YP_006402508.1| - 0.024 14.7 0.0 0.034 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_10 PF04967.7 gi|390938770|ref|YP_006402508.1| - 0.042 13.4 0.1 0.085 12.4 0.0 1.6 1 1 0 1 1 1 0 HTH DNA binding domain HTH_31 PF13560.1 gi|390938770|ref|YP_006402508.1| - 0.06 13.5 0.2 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|390938770|ref|YP_006402508.1| - 0.073 13.2 0.4 0.098 12.8 0.0 1.4 2 0 0 2 2 1 0 Winged helix-turn helix HTH_1 PF00126.22 gi|390938770|ref|YP_006402508.1| - 0.15 11.8 0.1 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF357 PF04010.8 gi|390938771|ref|YP_006402509.1| - 0.13 11.9 0.1 0.15 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF357) DS PF01916.12 gi|390938773|ref|YP_006402511.1| - 3.6e-61 206.8 0.1 6.4e-61 206.0 0.1 1.4 1 1 0 1 1 1 1 Deoxyhypusine synthase MSP7_C PF12948.2 gi|390938773|ref|YP_006402511.1| - 0.02 15.1 1.4 0.036 14.3 0.9 1.4 1 0 0 1 1 1 0 MSP7-like protein C-terminal domain NADHdh PF00146.16 gi|390938774|ref|YP_006402512.1| - 7.1e-37 127.1 19.7 9.1e-37 126.7 13.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF4149 PF13664.1 gi|390938774|ref|YP_006402512.1| - 1.1 9.4 8.3 4.5 7.4 0.1 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) MDM31_MDM32 PF08118.6 gi|390938775|ref|YP_006402513.1| - 0.002 16.6 0.4 0.002 16.6 0.3 1.2 1 0 0 1 1 1 1 Yeast mitochondrial distribution and morphology (MDM) proteins MNHE PF01899.11 gi|390938776|ref|YP_006402514.1| - 1.3e-36 125.5 3.8 1.5e-36 125.3 2.6 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MgtE PF01769.11 gi|390938776|ref|YP_006402514.1| - 2.7 8.2 7.4 0.83 9.9 1.4 2.1 1 1 1 2 2 2 0 Divalent cation transporter Oxidored_q2 PF00420.19 gi|390938777|ref|YP_006402515.1| - 4.3e-15 55.0 2.3 5.8e-15 54.6 1.6 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF350 PF03994.9 gi|390938777|ref|YP_006402515.1| - 0.62 9.8 3.4 0.56 9.9 0.4 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) MnhB PF04039.8 gi|390938778|ref|YP_006402516.1| - 1.8e-14 53.8 15.8 1.8e-14 53.8 10.9 3.2 2 2 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter GPI2 PF06432.6 gi|390938778|ref|YP_006402516.1| - 0.0067 15.8 2.4 0.037 13.3 1.7 2.1 1 1 0 1 1 1 1 Phosphatidylinositol N-acetylglucosaminyltransferase DUF2106 PF09879.4 gi|390938778|ref|YP_006402516.1| - 0.009 15.3 0.5 0.009 15.3 0.3 2.2 2 1 0 2 2 2 1 Predicted membrane protein (DUF2106) Endomucin PF07010.7 gi|390938778|ref|YP_006402516.1| - 3.7 6.7 10.2 0.11 11.8 1.6 1.9 2 0 0 2 2 2 0 Endomucin DUF4040 PF13244.1 gi|390938779|ref|YP_006402517.1| - 2.3e-14 53.1 3.9 2.8e-14 52.8 2.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) Oxidored_q1 PF00361.15 gi|390938779|ref|YP_006402517.1| - 0.0014 17.9 2.6 0.0019 17.5 1.8 1.2 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains EamA PF00892.15 gi|390938779|ref|YP_006402517.1| - 0.32 11.0 9.8 0.6 10.1 6.9 1.4 1 1 0 1 1 1 0 EamA-like transporter family Oxidored_q2 PF00420.19 gi|390938779|ref|YP_006402517.1| - 0.87 9.2 4.9 7.4 6.2 3.4 2.0 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TctB PF07331.6 gi|390938779|ref|YP_006402517.1| - 1.3 8.6 6.3 0.27 10.8 1.4 1.8 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2768 PF10966.3 gi|390938779|ref|YP_006402517.1| - 8.1 6.6 8.3 8.6 6.5 3.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2768) PhaG_MnhG_YufB PF03334.9 gi|390938780|ref|YP_006402518.1| - 2.5e-18 65.8 8.3 3.2e-18 65.5 5.7 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4231 PF14015.1 gi|390938780|ref|YP_006402518.1| - 0.17 11.9 1.4 0.32 10.9 1.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) MrpF_PhaF PF04066.8 gi|390938781|ref|YP_006402519.1| - 2.5e-05 24.4 5.7 2.5e-05 24.4 3.9 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Fer4 PF00037.22 gi|390938782|ref|YP_006402520.1| - 1.7e-17 62.2 6.7 3.2e-09 35.9 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|390938782|ref|YP_006402520.1| - 6.1e-13 48.9 9.6 9.3e-13 48.3 6.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|390938782|ref|YP_006402520.1| - 7.9e-12 44.7 6.9 1.3e-11 44.0 4.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|390938782|ref|YP_006402520.1| - 2e-11 44.4 28.4 2.7e-07 31.2 7.2 2.0 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|390938782|ref|YP_006402520.1| - 1.1e-10 41.2 5.1 1.5e-05 24.7 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|390938782|ref|YP_006402520.1| - 4.8e-10 38.8 9.4 4.8e-05 23.0 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|390938782|ref|YP_006402520.1| - 7.4e-10 38.9 9.8 2.2e-09 37.4 7.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|390938782|ref|YP_006402520.1| - 1.3e-09 37.4 9.1 0.00019 21.1 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|390938782|ref|YP_006402520.1| - 8e-09 35.3 7.6 1.3e-08 34.6 5.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|390938782|ref|YP_006402520.1| - 8.8e-08 32.4 3.5 0.001 19.4 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|390938782|ref|YP_006402520.1| - 4.3e-07 30.0 16.7 0.00057 20.2 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|390938782|ref|YP_006402520.1| - 9.3e-07 29.3 2.9 0.0062 17.0 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|390938782|ref|YP_006402520.1| - 2.8e-06 27.1 9.9 0.011 16.0 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|390938782|ref|YP_006402520.1| - 7.9e-06 26.1 11.0 0.00012 22.3 7.7 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|390938782|ref|YP_006402520.1| - 0.00016 22.0 4.6 0.11 12.9 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|390938782|ref|YP_006402520.1| - 0.0012 18.7 2.5 0.1 12.4 2.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Complex1_49kDa PF00346.14 gi|390938783|ref|YP_006402521.1| - 3.2e-51 173.9 0.0 7.5e-43 146.4 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|390938783|ref|YP_006402521.1| - 0.00035 19.4 0.0 0.00049 18.9 0.0 1.2 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.14 gi|390938784|ref|YP_006402522.1| - 4.1e-28 97.6 0.0 6.5e-28 96.9 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|390938784|ref|YP_006402522.1| - 1.1e-09 37.9 0.0 1.9e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DDE_Tnp_IS66 PF03050.9 gi|390938784|ref|YP_006402522.1| - 0.0098 15.1 0.0 0.019 14.2 0.0 1.4 1 1 0 1 1 1 1 Transposase IS66 family DUF35_N PF12172.3 gi|390938784|ref|YP_006402522.1| - 0.013 15.4 0.3 0.47 10.4 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Oxidored_q1 PF00361.15 gi|390938785|ref|YP_006402523.1| - 4.6e-31 108.0 16.5 4.6e-31 108.0 11.4 2.6 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|390938785|ref|YP_006402523.1| - 3.9e-09 36.0 8.4 1.8e-08 33.8 5.8 2.1 1 0 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein Peptidase_M20 PF01546.23 gi|390938786|ref|YP_006402524.1| - 9.2e-33 113.3 0.0 1.1e-32 113.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|390938786|ref|YP_006402524.1| - 1.4e-17 63.4 0.0 9e-17 60.8 0.0 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|390938786|ref|YP_006402524.1| - 0.00024 20.9 0.0 0.0007 19.3 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M32 PF02074.10 gi|390938787|ref|YP_006402525.1| - 5.2e-198 658.6 4.0 6.2e-198 658.4 2.8 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase LAGLIDADG_1 PF00961.14 gi|390938787|ref|YP_006402525.1| - 0.086 13.4 0.0 0.25 11.9 0.0 1.8 1 0 0 1 1 1 0 LAGLIDADG endonuclease SNase PF00565.12 gi|390938788|ref|YP_006402526.1| - 4.7e-07 30.0 0.0 1.2e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Ribosomal_S25 PF03297.10 gi|390938789|ref|YP_006402527.1| - 1.6e-05 24.8 0.3 2e-05 24.5 0.2 1.3 1 1 0 1 1 1 1 S25 ribosomal protein EAP30 PF04157.11 gi|390938789|ref|YP_006402527.1| - 0.0048 16.0 0.0 0.0055 15.8 0.0 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_24 PF13412.1 gi|390938789|ref|YP_006402527.1| - 0.067 12.5 0.5 0.067 12.5 0.4 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|390938789|ref|YP_006402527.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF998 PF06197.8 gi|390938790|ref|YP_006402528.1| - 6.5e-13 48.4 17.3 7.4e-13 48.2 12.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Tmemb_14 PF03647.8 gi|390938790|ref|YP_006402528.1| - 0.56 10.6 8.2 0.27 11.6 2.8 2.2 1 1 1 2 2 2 0 Transmembrane proteins 14C DUF2107 PF09880.4 gi|390938790|ref|YP_006402528.1| - 0.81 9.6 7.2 0.12 12.2 1.8 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2107) DUF3007 PF11460.3 gi|390938790|ref|YP_006402528.1| - 2.1 8.4 9.1 0.35 10.9 3.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3007) DUF4131 PF13567.1 gi|390938790|ref|YP_006402528.1| - 6.1 6.2 9.3 8.2 5.7 2.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Vpu PF00558.14 gi|390938790|ref|YP_006402528.1| - 9 5.9 5.8 5.5 6.6 2.2 2.0 1 1 1 2 2 2 0 Vpu protein GPI2 PF06432.6 gi|390938790|ref|YP_006402528.1| - 9.9 5.4 10.8 2.8 7.2 4.2 2.0 1 1 1 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase ABC2_membrane PF01061.19 gi|390938791|ref|YP_006402529.1| - 2.6e-17 62.7 22.6 3.9e-17 62.1 15.6 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|390938791|ref|YP_006402529.1| - 0.00031 19.8 26.2 0.00038 19.5 18.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|390938791|ref|YP_006402529.1| - 0.0013 17.6 18.7 0.0013 17.6 13.0 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|390938792|ref|YP_006402530.1| - 4.6e-05 22.6 34.8 5.7e-05 22.2 24.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|390938792|ref|YP_006402530.1| - 0.0015 17.7 31.1 0.0021 17.2 21.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|390938792|ref|YP_006402530.1| - 3.6 6.3 18.8 1.1 8.0 10.5 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|390938793|ref|YP_006402531.1| - 3.7e-28 98.5 0.0 1.6e-27 96.4 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|390938793|ref|YP_006402531.1| - 4.8e-10 39.8 0.1 0.00012 22.1 0.0 2.7 3 0 0 3 3 3 2 AAA domain DUF4162 PF13732.1 gi|390938793|ref|YP_006402531.1| - 2.6e-05 24.6 0.2 0.00013 22.3 0.2 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4162) AAA PF00004.24 gi|390938793|ref|YP_006402531.1| - 0.0014 18.8 0.7 0.067 13.3 0.2 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|390938793|ref|YP_006402531.1| - 0.0022 18.3 2.4 0.0029 17.9 0.5 1.9 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|390938793|ref|YP_006402531.1| - 0.0082 15.3 1.0 2.5 7.2 0.1 2.5 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|390938793|ref|YP_006402531.1| - 0.0082 15.6 0.1 0.017 14.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|390938793|ref|YP_006402531.1| - 0.011 15.0 0.2 0.071 12.5 0.1 2.2 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|390938793|ref|YP_006402531.1| - 0.012 15.0 0.1 0.05 13.0 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NB-ARC PF00931.17 gi|390938793|ref|YP_006402531.1| - 0.017 13.9 0.1 2.7 6.7 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain KdpD PF02702.12 gi|390938793|ref|YP_006402531.1| - 0.018 14.2 1.3 0.086 11.9 0.4 2.3 2 1 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain AAA_5 PF07728.9 gi|390938793|ref|YP_006402531.1| - 0.053 13.2 0.1 0.32 10.7 0.0 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|390938793|ref|YP_006402531.1| - 0.069 12.9 0.0 0.23 11.2 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain ATP-synt_ab PF00006.20 gi|390938793|ref|YP_006402531.1| - 0.12 11.8 0.0 0.22 11.0 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF2442 PF10387.4 gi|390938793|ref|YP_006402531.1| - 0.13 12.3 0.0 0.47 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2442) AAA_30 PF13604.1 gi|390938793|ref|YP_006402531.1| - 0.13 11.8 0.0 0.36 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain MrpF_PhaF PF04066.8 gi|390938794|ref|YP_006402532.1| - 7.9e-06 26.0 2.9 7.9e-06 26.0 2.0 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.9 gi|390938795|ref|YP_006402533.1| - 9.9e-22 76.7 10.7 1.3e-21 76.4 7.4 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit FAM163 PF15069.1 gi|390938795|ref|YP_006402533.1| - 0.012 16.1 0.1 0.016 15.7 0.1 1.2 1 0 0 1 1 1 0 FAM163 family Virul_fac_BrkB PF03631.10 gi|390938795|ref|YP_006402533.1| - 0.062 12.6 10.1 0.07 12.4 7.0 1.1 1 0 0 1 1 1 0 Virulence factor BrkB ExoD PF06055.7 gi|390938795|ref|YP_006402533.1| - 0.26 10.3 5.8 0.39 9.7 4.0 1.3 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD DUF2583 PF10762.4 gi|390938795|ref|YP_006402533.1| - 0.42 10.7 4.6 0.23 11.6 1.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) DUF973 PF06157.6 gi|390938795|ref|YP_006402533.1| - 8.9 5.1 9.8 11 4.8 6.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF4040 PF13244.1 gi|390938796|ref|YP_006402534.1| - 2.8e-10 40.0 8.7 8e-10 38.5 6.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) DUF4305 PF14146.1 gi|390938796|ref|YP_006402534.1| - 0.3 10.8 11.3 2 8.2 0.4 3.7 3 1 1 4 4 4 0 Domain of unknown function (DUF4305) DUF4231 PF14015.1 gi|390938796|ref|YP_006402534.1| - 2.7 8.0 8.5 10 6.1 5.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) Abi PF02517.11 gi|390938796|ref|YP_006402534.1| - 2.9 8.0 6.8 5.3 7.2 1.4 2.4 1 1 1 2 2 2 0 CAAX protease self-immunity DUF4234 PF14018.1 gi|390938796|ref|YP_006402534.1| - 4.5 7.0 9.3 34 4.2 6.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) MnhB PF04039.8 gi|390938797|ref|YP_006402535.1| - 9.4e-18 64.4 14.6 9.4e-18 64.4 10.1 2.4 3 0 0 3 3 3 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF221 PF02714.10 gi|390938797|ref|YP_006402535.1| - 0.17 10.7 7.5 0.48 9.2 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function DUF221 Oxidored_q2 PF00420.19 gi|390938798|ref|YP_006402536.1| - 1.3e-18 66.4 4.2 1.7e-18 65.9 2.9 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Ammonium_transp PF00909.16 gi|390938798|ref|YP_006402536.1| - 0.013 13.9 1.1 0.016 13.6 0.8 1.1 1 0 0 1 1 1 0 Ammonium Transporter Family DUF2191 PF09957.4 gi|390938798|ref|YP_006402536.1| - 0.032 14.0 0.3 0.072 12.9 0.2 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) Curto_V3 PF07436.6 gi|390938798|ref|YP_006402536.1| - 0.14 12.3 0.9 0.24 11.5 0.6 1.4 1 0 0 1 1 1 0 Curtovirus V3 protein DUF2108 PF09881.4 gi|390938798|ref|YP_006402536.1| - 5.2 6.9 8.5 1.7 8.5 2.5 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) MNHE PF01899.11 gi|390938799|ref|YP_006402537.1| - 1.3e-30 106.1 1.2 1.5e-30 105.9 0.9 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q1 PF00361.15 gi|390938800|ref|YP_006402538.1| - 2.5e-46 158.1 17.1 2.5e-46 158.1 11.8 2.9 1 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|390938800|ref|YP_006402538.1| - 0.013 15.0 1.2 0.013 15.0 0.8 3.0 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PAPS_reduct PF01507.14 gi|390938801|ref|YP_006402539.1| - 4.5e-32 111.2 0.0 6.4e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|390938801|ref|YP_006402539.1| - 0.0041 16.0 0.1 0.0059 15.5 0.0 1.2 1 0 0 1 1 1 1 NAD synthase AFOR_C PF01314.13 gi|390938802|ref|YP_006402540.1| - 5.5e-117 390.6 0.1 6.6e-117 390.4 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|390938802|ref|YP_006402540.1| - 2.6e-77 258.7 0.1 3.9e-77 258.1 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain CTP-dep_RFKase PF01982.11 gi|390938803|ref|YP_006402541.1| - 3.7e-29 100.8 0.2 4.2e-29 100.6 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 Antitoxin-MazE PF04014.13 gi|390938803|ref|YP_006402541.1| - 0.004 16.8 0.2 0.021 14.5 0.0 2.2 2 1 1 3 3 3 1 Antidote-toxin recognition MazE SAM_adeno_trans PF01887.11 gi|390938805|ref|YP_006402543.1| - 1.6e-92 309.2 0.0 1.7e-92 309.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Glyco_hydro_57 PF03065.10 gi|390938806|ref|YP_006402544.1| - 1.5e-91 307.0 0.2 2.1e-91 306.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF2223 PF09985.4 gi|390938806|ref|YP_006402544.1| - 4.6e-59 199.5 0.7 8.6e-59 198.6 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) Rifin_STEVOR PF02009.11 gi|390938806|ref|YP_006402544.1| - 0.043 13.4 1.9 0.069 12.7 1.3 1.2 1 0 0 1 1 1 0 Rifin/stevor family TMEM154 PF15102.1 gi|390938806|ref|YP_006402544.1| - 0.36 10.5 16.8 0.93 9.1 11.7 1.7 1 0 0 1 1 1 0 TMEM154 protein family MGC-24 PF05283.6 gi|390938806|ref|YP_006402544.1| - 2.8 7.7 26.5 4.9 6.9 18.4 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) MFS_1 PF07690.11 gi|390938807|ref|YP_006402545.1| - 2.7e-29 101.9 45.7 3.7e-17 62.0 12.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|390938807|ref|YP_006402545.1| - 4e-05 21.9 17.5 7e-05 21.1 12.1 1.3 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.2 gi|390938807|ref|YP_006402545.1| - 0.00024 20.8 1.1 0.00024 20.8 0.8 5.1 4 1 1 5 5 5 2 MFS_1 like family Gemini_mov PF01708.11 gi|390938807|ref|YP_006402545.1| - 0.12 11.9 0.4 0.47 10.0 0.3 2.1 1 0 0 1 1 1 0 Geminivirus putative movement protein MscL PF01741.13 gi|390938807|ref|YP_006402545.1| - 0.88 9.7 5.6 17 5.5 0.8 3.0 2 2 0 2 2 2 0 Large-conductance mechanosensitive channel, MscL PDDEXK_1 PF12705.2 gi|390938808|ref|YP_006402546.1| - 2.2e-09 37.0 0.2 4.3e-07 29.5 0.0 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|390938808|ref|YP_006402546.1| - 2e-07 31.0 0.3 3.2e-07 30.4 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.1 gi|390938808|ref|YP_006402546.1| - 0.0002 21.3 0.1 0.00038 20.4 0.1 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.1 gi|390938808|ref|YP_006402546.1| - 0.012 15.4 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Hjc PF01870.13 gi|390938808|ref|YP_006402546.1| - 0.033 13.7 0.0 0.098 12.2 0.0 1.9 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) CYTH PF01928.16 gi|390938809|ref|YP_006402547.1| - 4.7e-22 78.5 0.1 5.8e-22 78.2 0.1 1.0 1 0 0 1 1 1 1 CYTH domain Hist_deacetyl PF00850.14 gi|390938810|ref|YP_006402548.1| - 3.7e-51 174.2 0.0 4.5e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DHH PF01368.15 gi|390938811|ref|YP_006402549.1| - 3e-07 30.1 0.0 6.3e-07 29.1 0.0 1.5 1 1 0 1 1 1 1 DHH family CDP-OH_P_transf PF01066.16 gi|390938812|ref|YP_006402550.1| - 2.3e-15 56.7 15.0 6.9e-15 55.1 10.4 1.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AP_endonuc_2 PF01261.19 gi|390938813|ref|YP_006402551.1| - 6.9e-19 67.9 0.0 8.5e-19 67.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|390938813|ref|YP_006402551.1| - 0.049 12.6 0.0 0.078 11.9 0.0 1.3 1 0 0 1 1 1 0 UV-endonuclease UvdE NUDIX PF00293.23 gi|390938814|ref|YP_006402552.1| - 5.1e-17 61.7 0.0 6.9e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain ATP-synt_D PF01813.12 gi|390938816|ref|YP_006402554.1| - 6.3e-34 117.2 11.6 8.3e-34 116.8 8.0 1.2 1 0 0 1 1 1 1 ATP synthase subunit D DUF61 PF01886.11 gi|390938817|ref|YP_006402555.1| - 9.7e-31 106.3 0.5 1.1e-30 106.1 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Flavokinase PF01687.12 gi|390938817|ref|YP_006402555.1| - 0.13 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Riboflavin kinase DivIVA PF05103.8 gi|390938818|ref|YP_006402556.1| - 0.0027 17.7 5.1 0.21 11.6 0.3 2.2 2 0 0 2 2 2 2 DivIVA protein ATP-synt_B PF00430.13 gi|390938818|ref|YP_006402556.1| - 0.0028 17.4 12.9 0.0064 16.2 1.3 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|390938818|ref|YP_006402556.1| - 0.009 15.7 5.9 0.05 13.3 3.0 1.9 1 1 1 2 2 2 2 HrpE/YscL/FliH and V-type ATPase subunit E Pinin_SDK_memA PF04696.8 gi|390938818|ref|YP_006402556.1| - 0.13 11.8 5.1 0.16 11.5 3.5 1.2 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region vATP-synt_E PF01991.13 gi|390938818|ref|YP_006402556.1| - 0.2 10.9 12.0 0.056 12.7 5.6 1.8 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit DUF3552 PF12072.3 gi|390938818|ref|YP_006402556.1| - 0.3 10.2 13.3 0.46 9.6 1.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) V-ATPase_G PF03179.10 gi|390938818|ref|YP_006402556.1| - 0.54 10.5 12.3 0.93 9.8 8.5 1.4 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Orthopox_B11R PF07033.6 gi|390938818|ref|YP_006402556.1| - 0.92 9.0 7.4 1 8.8 3.0 2.0 1 1 1 2 2 2 0 Orthopoxvirus B11R protein LUC7 PF03194.10 gi|390938818|ref|YP_006402556.1| - 0.94 8.9 7.3 1.1 8.7 5.1 1.0 1 0 0 1 1 1 0 LUC7 N_terminus DUF883 PF05957.8 gi|390938818|ref|YP_006402556.1| - 1.7 9.1 4.4 3.4 8.1 0.3 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) V_ATPase_I PF01496.14 gi|390938819|ref|YP_006402557.1| - 1.2e-53 182.1 25.8 6.9e-28 96.9 6.8 3.9 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family NPV_P10 PF05531.7 gi|390938819|ref|YP_006402557.1| - 0.033 14.4 0.0 0.26 11.5 0.0 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein MscL PF01741.13 gi|390938819|ref|YP_006402557.1| - 0.036 14.1 0.7 0.036 14.1 0.5 2.2 2 0 0 2 2 2 0 Large-conductance mechanosensitive channel, MscL Prefoldin PF02996.12 gi|390938819|ref|YP_006402557.1| - 0.049 13.2 2.1 2.8 7.6 0.0 3.0 3 0 0 3 3 3 0 Prefoldin subunit HAUS5 PF14817.1 gi|390938819|ref|YP_006402557.1| - 0.19 10.2 1.5 0.27 9.7 1.0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 Prefoldin_2 PF01920.15 gi|390938819|ref|YP_006402557.1| - 2.2 8.1 5.6 10 5.9 0.2 3.0 2 1 1 3 3 3 0 Prefoldin subunit Val_tRNA-synt_C PF10458.4 gi|390938819|ref|YP_006402557.1| - 2.7 8.1 7.0 3.7 7.6 0.1 2.7 3 0 0 3 3 3 0 Valyl tRNA synthetase tRNA binding arm ATP-synt_C PF00137.16 gi|390938820|ref|YP_006402558.1| - 1.1e-14 54.0 19.0 4.9e-10 39.1 2.7 2.1 2 0 0 2 2 2 2 ATP synthase subunit C Otopetrin PF03189.8 gi|390938820|ref|YP_006402558.1| - 0.074 12.0 0.0 0.087 11.8 0.0 1.1 1 0 0 1 1 1 0 Otopetrin ExoD PF06055.7 gi|390938820|ref|YP_006402558.1| - 0.15 11.1 5.1 0.079 12.0 1.5 1.9 1 1 0 2 2 2 0 Exopolysaccharide synthesis, ExoD EamA PF00892.15 gi|390938820|ref|YP_006402558.1| - 9 6.3 13.3 5.1 7.1 2.0 2.4 2 0 0 2 2 2 0 EamA-like transporter family vATP-synt_E PF01991.13 gi|390938821|ref|YP_006402559.1| - 1.7e-14 53.5 15.6 4.4e-14 52.2 10.8 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|390938821|ref|YP_006402559.1| - 0.0006 19.6 7.1 0.013 15.2 5.7 2.0 1 1 1 2 2 2 2 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.3 gi|390938821|ref|YP_006402559.1| - 0.0076 15.4 17.6 0.15 11.2 7.4 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|390938821|ref|YP_006402559.1| - 0.012 15.7 13.0 0.14 12.2 2.2 2.6 1 1 1 2 2 2 0 DivIVA protein DUF3226 PF11536.3 gi|390938821|ref|YP_006402559.1| - 0.025 14.0 0.4 0.033 13.6 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3226) ATP-synt_B PF00430.13 gi|390938821|ref|YP_006402559.1| - 0.067 12.9 17.7 0.85 9.4 2.0 2.4 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF2007 PF09413.5 gi|390938821|ref|YP_006402559.1| - 0.072 12.9 2.2 0.42 10.4 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF2007) RE_Alw26IDE PF09665.5 gi|390938821|ref|YP_006402559.1| - 0.96 8.0 7.7 1.2 7.7 5.3 1.1 1 0 0 1 1 1 0 Type II restriction endonuclease (RE_Alw26IDE) Caldesmon PF02029.10 gi|390938821|ref|YP_006402559.1| - 4.4 5.5 12.3 5.4 5.3 8.5 1.1 1 0 0 1 1 1 0 Caldesmon Atrophin-1 PF03154.10 gi|390938821|ref|YP_006402559.1| - 6.4 4.7 9.7 7.8 4.4 6.7 1.0 1 0 0 1 1 1 0 Atrophin-1 family Glyco_hydro_26 PF02156.10 gi|390938822|ref|YP_006402560.1| - 0.19 11.2 0.1 0.29 10.5 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 26 ATP-synt_ab PF00006.20 gi|390938824|ref|YP_006402562.1| - 2.9e-87 291.6 0.0 5.1e-87 290.8 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|390938824|ref|YP_006402562.1| - 8.9e-18 64.8 0.2 1.8e-17 63.8 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|390938824|ref|YP_006402562.1| - 4.1e-15 55.7 3.7 1.1e-14 54.4 2.6 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_19 PF13245.1 gi|390938824|ref|YP_006402562.1| - 0.042 13.6 0.1 0.51 10.1 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain Peptidase_M23 PF01551.17 gi|390938824|ref|YP_006402562.1| - 0.072 13.1 0.1 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 Peptidase family M23 ATP-synt_ab PF00006.20 gi|390938825|ref|YP_006402563.1| - 2.5e-60 203.6 0.0 3.4e-60 203.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|390938825|ref|YP_006402563.1| - 2.6e-12 47.2 0.2 4.5e-12 46.4 0.1 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain HAS-barrel PF09378.5 gi|390938825|ref|YP_006402563.1| - 0.00087 19.1 0.7 0.0024 17.7 0.5 1.7 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab_N PF02874.18 gi|390938825|ref|YP_006402563.1| - 0.011 15.9 0.8 0.02 15.0 0.6 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, beta-barrel domain ATP_bind_4 PF01902.12 gi|390938826|ref|YP_006402564.1| - 1.5e-54 184.6 0.0 1.8e-54 184.4 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|390938826|ref|YP_006402564.1| - 0.0034 16.6 0.0 0.0053 16.0 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC UPF0004 PF00919.15 gi|390938826|ref|YP_006402564.1| - 0.17 11.7 0.0 12 5.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein family UPF0004 Skp1_POZ PF03931.10 gi|390938827|ref|YP_006402565.1| - 0.076 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Skp1 family, tetramerisation domain HGTP_anticodon PF03129.15 gi|390938828|ref|YP_006402566.1| - 6.7e-21 74.0 0.1 1.3e-20 73.1 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|390938828|ref|YP_006402566.1| - 1.3e-17 63.9 0.6 3.6e-17 62.5 0.4 1.8 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|390938828|ref|YP_006402566.1| - 1.5e-05 24.7 0.0 3.5e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Glyoxalase PF00903.20 gi|390938830|ref|YP_006402568.1| - 0.11 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Phage_integrase PF00589.17 gi|390938831|ref|YP_006402569.1| - 5.9e-37 126.9 0.1 8.9e-37 126.4 0.1 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|390938831|ref|YP_006402569.1| - 2.2e-09 37.3 1.0 9e-08 32.1 0.1 2.9 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|390938831|ref|YP_006402569.1| - 1.1e-08 35.3 0.0 1.9e-06 28.0 0.0 2.5 1 1 1 2 2 2 1 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.1 gi|390938831|ref|YP_006402569.1| - 2.8e-06 26.3 0.4 4.6e-06 25.6 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|390938831|ref|YP_006402569.1| - 0.00012 21.4 0.8 0.00021 20.6 0.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|390938831|ref|YP_006402569.1| - 0.00069 19.3 0.4 0.0011 18.6 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Phage_int_SAM_3 PF14659.1 gi|390938831|ref|YP_006402569.1| - 0.0067 16.6 0.0 0.03 14.5 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain UPF0547 PF10571.4 gi|390938831|ref|YP_006402569.1| - 0.041 13.5 0.5 0.068 12.8 0.3 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Spore_III_AB PF09548.5 gi|390938831|ref|YP_006402569.1| - 0.12 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) DHH PF01368.15 gi|390938832|ref|YP_006402570.1| - 1.9e-10 40.5 0.0 2.7e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|390938832|ref|YP_006402570.1| - 3e-08 33.2 0.0 6.3e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DUF2258 PF10015.4 gi|390938833|ref|YP_006402571.1| - 7.9e-25 86.4 1.7 7.9e-25 86.4 1.1 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) CWC25 PF12542.3 gi|390938833|ref|YP_006402571.1| - 0.36 11.3 3.0 0.2 12.0 0.7 1.6 2 0 0 2 2 2 0 Pre-mRNA splicing factor LEA_1 PF03760.10 gi|390938833|ref|YP_006402571.1| - 2.1 8.5 7.0 0.39 10.8 2.1 1.8 2 0 0 2 2 2 0 Late embryogenesis abundant (LEA) group 1 DUF4096 PF13340.1 gi|390938835|ref|YP_006402573.1| - 0.1 12.4 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) bact-PGI_C PF10432.4 gi|390938837|ref|YP_006402575.1| - 1.9e-31 108.8 0.0 2.7e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|390938837|ref|YP_006402575.1| - 3.9e-07 29.7 0.0 1.3e-06 28.0 0.0 1.7 2 0 0 2 2 2 1 SIS domain PAP2 PF01569.16 gi|390938838|ref|YP_006402576.1| - 9.3e-21 73.8 1.2 9.3e-21 73.8 0.8 2.8 3 1 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|390938838|ref|YP_006402576.1| - 0.00084 18.9 2.0 0.0021 17.6 0.1 2.4 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|390938838|ref|YP_006402576.1| - 0.0053 17.0 0.8 0.0053 17.0 0.5 2.5 2 1 0 2 2 2 1 PAP2 superfamily C-terminal VPEP PF07589.6 gi|390938838|ref|YP_006402576.1| - 0.014 15.2 0.4 0.014 15.2 0.3 3.5 3 0 0 3 3 3 0 PEP-CTERM motif DUF1652 PF07865.6 gi|390938838|ref|YP_006402576.1| - 0.097 12.2 0.1 8.3 6.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1652) UbiA PF01040.13 gi|390938839|ref|YP_006402577.1| - 1.9e-33 115.7 16.8 2.5e-33 115.3 11.6 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family PAP2 PF01569.16 gi|390938839|ref|YP_006402577.1| - 0.15 11.7 7.8 0.84 9.3 5.4 2.3 1 1 0 1 1 1 0 PAP2 superfamily HAD_2 PF13419.1 gi|390938840|ref|YP_006402578.1| - 3.7e-27 95.6 0.0 4.2e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|390938840|ref|YP_006402578.1| - 2.7e-13 50.8 0.0 1.8e-09 38.3 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|390938840|ref|YP_006402578.1| - 1.4e-10 40.6 0.0 2.2e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|390938840|ref|YP_006402578.1| - 1.2e-09 38.5 0.0 1.7e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|390938840|ref|YP_006402578.1| - 0.00024 20.8 0.0 0.027 14.0 0.0 2.3 2 0 0 2 2 2 1 Acid Phosphatase Put_Phosphatase PF06888.7 gi|390938840|ref|YP_006402578.1| - 0.04 13.0 0.0 0.57 9.3 0.0 2.3 2 1 0 2 2 2 0 Putative Phosphatase Hydrolase_3 PF08282.7 gi|390938840|ref|YP_006402578.1| - 0.05 13.1 0.0 1.9 7.9 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF3895 PF13034.1 gi|390938840|ref|YP_006402578.1| - 0.083 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3895) Hydrolase_3 PF08282.7 gi|390938841|ref|YP_006402579.1| - 4.9e-20 72.1 0.0 1.1e-11 44.8 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|390938841|ref|YP_006402579.1| - 1.8e-05 24.2 0.0 9.3e-05 21.8 0.0 2.0 2 1 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|390938841|ref|YP_006402579.1| - 0.00053 20.2 0.2 0.24 11.5 0.0 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|390938841|ref|YP_006402579.1| - 0.0016 18.9 0.0 0.43 10.9 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|390938841|ref|YP_006402579.1| - 0.021 15.0 1.3 0.36 11.0 0.0 2.8 3 1 1 4 4 4 0 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|390938841|ref|YP_006402579.1| - 0.049 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.9 gi|390938842|ref|YP_006402580.1| - 2.6e-25 89.4 2.0 1.2e-08 35.1 0.0 4.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|390938842|ref|YP_006402580.1| - 1.5e-16 61.1 0.3 2.7e-08 34.1 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|390938842|ref|YP_006402580.1| - 2.9e-11 42.9 1.5 2.8e-05 23.2 0.1 4.0 4 0 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|390938842|ref|YP_006402580.1| - 6.9e-10 38.8 4.1 6.2e-09 35.7 0.1 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|390938842|ref|YP_006402580.1| - 1.1e-09 38.5 7.3 3.3e-05 24.2 0.9 3.7 4 1 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|390938842|ref|YP_006402580.1| - 1.3e-07 31.1 0.4 0.0067 15.5 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|390938842|ref|YP_006402580.1| - 5.1e-07 28.8 0.2 0.0029 16.4 0.0 3.3 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.9 gi|390938842|ref|YP_006402580.1| - 1.1e-06 27.3 1.6 0.00044 18.8 0.1 2.6 3 0 0 3 3 3 2 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|390938842|ref|YP_006402580.1| - 2.3e-05 24.0 0.6 0.34 10.4 0.1 3.6 3 1 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|390938842|ref|YP_006402580.1| - 2.8e-05 23.9 0.8 0.003 17.3 0.1 3.5 4 0 0 4 4 4 1 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|390938842|ref|YP_006402580.1| - 5e-05 23.4 0.8 0.011 15.8 0.0 3.2 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|390938842|ref|YP_006402580.1| - 5.8e-05 23.2 0.0 0.023 14.9 0.0 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding GIDA PF01134.17 gi|390938842|ref|YP_006402580.1| - 0.00011 21.1 2.8 0.12 11.2 0.1 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|390938842|ref|YP_006402580.1| - 0.00031 19.9 0.7 0.0018 17.4 0.0 2.2 2 0 0 2 2 2 1 Thi4 family NAD_binding_10 PF13460.1 gi|390938842|ref|YP_006402580.1| - 0.00033 20.7 0.3 8.7 6.3 0.0 3.5 4 0 0 4 4 4 0 NADH(P)-binding K_oxygenase PF13434.1 gi|390938842|ref|YP_006402580.1| - 0.0027 16.6 0.4 0.13 11.1 0.1 3.1 3 1 1 4 4 4 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|390938842|ref|YP_006402580.1| - 0.0042 16.1 0.2 0.011 14.7 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.13 gi|390938842|ref|YP_006402580.1| - 0.024 14.2 0.2 1.2 8.7 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|390938842|ref|YP_006402580.1| - 0.036 13.4 2.4 1.1 8.5 0.1 3.2 3 1 1 4 4 4 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|390938842|ref|YP_006402580.1| - 0.053 13.3 0.2 3 7.6 0.2 2.5 2 0 0 2 2 2 0 ThiF family DUF498 PF04430.9 gi|390938842|ref|YP_006402580.1| - 0.059 12.9 0.0 2 7.9 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) DJ-1_PfpI PF01965.19 gi|390938842|ref|YP_006402580.1| - 0.14 11.5 0.1 3.3 7.1 0.0 2.7 3 0 0 3 3 3 0 DJ-1/PfpI family Fer4_11 PF13247.1 gi|390938843|ref|YP_006402581.1| - 1.7e-23 82.3 9.1 1.7e-23 82.3 6.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|390938843|ref|YP_006402581.1| - 5.5e-16 58.6 51.4 5.2e-08 33.1 9.0 3.4 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|390938843|ref|YP_006402581.1| - 6.6e-13 48.7 26.3 3e-07 30.5 5.1 2.9 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|390938843|ref|YP_006402581.1| - 8.9e-13 47.2 39.5 3.4e-06 26.4 2.6 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|390938843|ref|YP_006402581.1| - 2.3e-12 46.5 26.4 8.3e-06 25.5 8.9 3.7 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|390938843|ref|YP_006402581.1| - 4.2e-12 45.3 38.3 2.7e-05 23.8 1.9 4.9 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|390938843|ref|YP_006402581.1| - 2.2e-11 42.9 33.4 8.9e-06 25.3 0.9 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|390938843|ref|YP_006402581.1| - 2.6e-10 40.0 41.9 0.0013 19.1 2.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|390938843|ref|YP_006402581.1| - 7.1e-09 35.5 23.9 3e-05 23.9 5.2 3.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|390938843|ref|YP_006402581.1| - 6.7e-08 32.2 35.8 0.001 19.2 1.6 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|390938843|ref|YP_006402581.1| - 1.1e-07 32.0 22.1 0.0025 18.1 0.6 4.3 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|390938843|ref|YP_006402581.1| - 7.2e-07 29.5 22.0 0.0039 17.5 1.3 4.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|390938843|ref|YP_006402581.1| - 1.3e-06 29.0 25.3 0.047 14.4 1.1 4.8 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|390938843|ref|YP_006402581.1| - 2.8e-05 23.8 29.5 0.0017 18.1 7.9 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|390938843|ref|YP_006402581.1| - 0.001 19.6 22.8 0.0076 16.7 4.4 3.2 2 1 0 2 2 2 2 4Fe-4S single cluster domain GF_recep_IV PF14843.1 gi|390938843|ref|YP_006402581.1| - 0.057 13.0 14.0 0.62 9.6 6.6 2.3 1 1 1 2 2 2 0 Growth factor receptor domain IV Oxidored_q1 PF00361.15 gi|390938844|ref|YP_006402582.1| - 8.9e-33 113.6 22.3 8.9e-33 113.6 15.5 2.9 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|390938845|ref|YP_006402583.1| - 2.5e-37 128.6 31.3 2.5e-37 128.6 21.7 2.8 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains TrbL PF04610.9 gi|390938846|ref|YP_006402584.1| - 0.0099 15.6 0.4 0.01 15.5 0.3 1.0 1 0 0 1 1 1 1 TrbL/VirB6 plasmid conjugal transfer protein NADHdh PF00146.16 gi|390938847|ref|YP_006402585.1| - 2e-14 53.4 23.5 2.5e-14 53.0 16.3 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|390938848|ref|YP_006402586.1| - 2.5e-40 138.1 0.0 5.3e-29 101.0 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|390938848|ref|YP_006402586.1| - 1.7e-18 66.7 0.0 3.8e-18 65.6 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|390938848|ref|YP_006402586.1| - 1.1e-15 57.3 4.1 5.4e-10 38.6 0.0 3.5 1 1 2 3 3 3 3 Nickel-dependent hydrogenase Fer4_7 PF12838.2 gi|390938849|ref|YP_006402587.1| - 2.1e-16 60.0 37.8 2.2e-10 40.7 7.8 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|390938849|ref|YP_006402587.1| - 1.7e-13 49.5 14.9 4.4e-09 35.5 2.7 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|390938849|ref|YP_006402587.1| - 1.2e-11 43.8 25.2 5.1e-07 29.2 2.2 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|390938849|ref|YP_006402587.1| - 2.3e-11 43.7 20.2 1.1e-08 35.2 6.8 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|390938849|ref|YP_006402587.1| - 2.1e-10 40.2 26.8 2.7e-09 36.6 7.4 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|390938849|ref|YP_006402587.1| - 4.3e-10 39.3 6.3 4.3e-10 39.3 4.4 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|390938849|ref|YP_006402587.1| - 7.5e-08 31.8 4.3 7.5e-08 31.8 2.9 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|390938849|ref|YP_006402587.1| - 9.9e-08 32.6 14.0 0.0015 19.2 4.0 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|390938849|ref|YP_006402587.1| - 7.5e-07 29.4 12.5 0.00082 19.7 0.2 3.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|390938849|ref|YP_006402587.1| - 2.1e-06 27.6 17.3 4.4e-06 26.6 7.5 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|390938849|ref|YP_006402587.1| - 0.00042 20.4 1.7 0.00042 20.4 1.2 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|390938849|ref|YP_006402587.1| - 0.0011 19.5 0.4 0.0011 19.5 0.3 3.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|390938849|ref|YP_006402587.1| - 0.0021 18.3 17.4 0.033 14.5 2.0 3.1 1 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|390938849|ref|YP_006402587.1| - 0.0049 16.7 7.9 0.15 11.9 0.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|390938849|ref|YP_006402587.1| - 0.0075 16.6 1.3 0.0075 16.6 0.9 3.3 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|390938849|ref|YP_006402587.1| - 0.047 14.2 9.2 0.047 14.2 6.4 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Furin-like PF00757.15 gi|390938849|ref|YP_006402587.1| - 0.26 10.9 5.4 0.47 10.1 3.8 1.5 1 1 0 1 1 1 0 Furin-like cysteine rich region Fer4_19 PF06902.6 gi|390938849|ref|YP_006402587.1| - 0.71 9.7 4.3 9.5 6.1 0.1 3.0 3 0 0 3 3 3 0 Divergent 4Fe-4S mono-cluster Zn-ribbon_8 PF09723.5 gi|390938849|ref|YP_006402587.1| - 1.1 9.2 0.0 1.1 9.2 0.0 3.2 3 0 0 3 3 3 0 Zinc ribbon domain Oxidored_q6 PF01058.17 gi|390938850|ref|YP_006402588.1| - 5.9e-21 74.4 0.1 7.2e-21 74.1 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit GATase_6 PF13522.1 gi|390938851|ref|YP_006402589.1| - 2.3e-07 30.8 0.0 3.5e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|390938851|ref|YP_006402589.1| - 4.3e-07 28.8 0.0 5.8e-07 28.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_2 PF00310.16 gi|390938851|ref|YP_006402589.1| - 0.025 13.3 0.0 0.036 12.7 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II NAD_kinase PF01513.16 gi|390938852|ref|YP_006402590.1| - 2e-47 161.3 0.1 2.3e-47 161.1 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|390938852|ref|YP_006402590.1| - 0.0034 16.8 0.6 0.0095 15.3 0.1 2.0 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain Metallophos PF00149.23 gi|390938853|ref|YP_006402591.1| - 2.6e-17 62.8 0.1 3.4e-17 62.5 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|390938853|ref|YP_006402591.1| - 0.0014 18.5 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain 3HCDH PF00725.17 gi|390938854|ref|YP_006402592.1| - 0.14 12.6 0.0 0.43 10.9 0.0 1.7 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DZR PF12773.2 gi|390938855|ref|YP_006402593.1| - 0.13 12.0 0.3 0.22 11.3 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Sp100 PF03172.8 gi|390938856|ref|YP_006402594.1| - 0.051 13.5 0.0 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 Sp100 domain Cpn60_TCP1 PF00118.19 gi|390938857|ref|YP_006402595.1| - 1e-166 555.3 11.5 1.2e-166 555.1 8.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Phe_tRNA-synt_N PF02912.13 gi|390938857|ref|YP_006402595.1| - 0.083 12.6 2.7 14 5.4 0.1 3.4 3 0 0 3 3 3 0 Aminoacyl tRNA synthetase class II, N-terminal domain RNA_pol_Rpb6 PF01192.17 gi|390938858|ref|YP_006402596.1| - 3.8e-14 52.1 0.0 2.1e-13 49.8 0.0 1.9 1 1 1 2 2 2 1 RNA polymerase Rpb6 Peptidase_M50 PF02163.17 gi|390938859|ref|YP_006402597.1| - 8.9e-18 63.9 7.1 8.1e-17 60.8 4.9 2.3 1 1 0 1 1 1 1 Peptidase family M50 Topoisom_bac PF01131.15 gi|390938860|ref|YP_006402598.1| - 4.9e-108 361.5 0.0 6.1e-108 361.2 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|390938860|ref|YP_006402598.1| - 5.9e-11 42.2 0.0 4.5e-10 39.4 0.0 2.5 3 0 0 3 3 3 1 Toprim domain Pyrophosphatase PF00719.14 gi|390938861|ref|YP_006402599.1| - 7.9e-63 210.5 0.1 8.9e-63 210.4 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase FliJ PF02050.11 gi|390938862|ref|YP_006402600.1| - 0.0012 18.9 2.3 0.0021 18.0 0.5 1.8 2 0 0 2 2 2 1 Flagellar FliJ protein Prefoldin PF02996.12 gi|390938862|ref|YP_006402600.1| - 0.0055 16.3 5.0 0.31 10.7 0.1 2.5 2 1 1 3 3 3 2 Prefoldin subunit Syntaxin PF00804.20 gi|390938862|ref|YP_006402600.1| - 0.012 15.7 3.9 0.65 10.1 0.8 2.1 2 0 0 2 2 2 0 Syntaxin PcfJ PF14284.1 gi|390938862|ref|YP_006402600.1| - 0.017 14.6 0.5 0.33 10.4 0.0 2.1 2 0 0 2 2 2 0 PcfJ-like protein Nup54 PF13874.1 gi|390938862|ref|YP_006402600.1| - 0.023 14.3 1.6 0.074 12.7 0.3 2.0 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 BLOC1_2 PF10046.4 gi|390938862|ref|YP_006402600.1| - 0.029 14.4 4.9 2.5 8.3 0.1 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1351 PF07083.6 gi|390938862|ref|YP_006402600.1| - 0.034 13.7 3.0 0.05 13.2 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1351) THOC7 PF05615.8 gi|390938862|ref|YP_006402600.1| - 0.057 13.6 0.8 0.057 13.6 0.5 2.0 2 0 0 2 2 2 0 Tho complex subunit 7 DUF939_C PF11728.3 gi|390938862|ref|YP_006402600.1| - 0.07 12.9 2.0 0.21 11.4 0.3 2.0 2 0 0 2 2 2 0 DUF939 C-terminal domain Corona_S2 PF01601.11 gi|390938862|ref|YP_006402600.1| - 0.078 11.0 0.8 0.088 10.8 0.6 1.1 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein DASH_Duo1 PF08651.5 gi|390938862|ref|YP_006402600.1| - 0.089 12.3 2.1 2.4 7.8 0.3 2.5 2 1 0 2 2 2 0 DASH complex subunit Duo1 Sec5 PF15469.1 gi|390938862|ref|YP_006402600.1| - 0.12 12.0 2.4 0.3 10.7 1.7 1.7 1 1 0 1 1 1 0 Exocyst complex component Sec5 DUF4201 PF13870.1 gi|390938862|ref|YP_006402600.1| - 0.13 11.7 5.7 0.082 12.3 1.9 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4201) DUF1395 PF07160.7 gi|390938862|ref|YP_006402600.1| - 0.14 11.6 2.3 0.2 11.1 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1395) IncA PF04156.9 gi|390938862|ref|YP_006402600.1| - 0.34 10.4 5.4 0.8 9.2 3.7 1.6 1 1 0 1 1 1 0 IncA protein Osmo_CC PF08946.5 gi|390938862|ref|YP_006402600.1| - 0.43 10.6 3.7 0.39 10.7 0.3 2.3 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Chordopox_A30L PF06015.7 gi|390938862|ref|YP_006402600.1| - 0.46 10.1 3.7 0.95 9.1 0.1 2.2 2 0 0 2 2 2 0 Chordopoxvirus A30L protein AAA_23 PF13476.1 gi|390938862|ref|YP_006402600.1| - 0.51 10.6 4.2 0.72 10.1 2.9 1.3 1 0 0 1 1 1 0 AAA domain SlyX PF04102.7 gi|390938862|ref|YP_006402600.1| - 0.53 10.7 3.0 3.4 8.1 0.4 2.2 2 0 0 2 2 2 0 SlyX CENP-F_leu_zip PF10473.4 gi|390938862|ref|YP_006402600.1| - 0.81 9.5 7.1 1.4 8.7 4.9 1.3 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2443 PF10398.4 gi|390938862|ref|YP_006402600.1| - 1 9.2 5.3 2.3 8.0 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2443) DUF972 PF06156.8 gi|390938862|ref|YP_006402600.1| - 4.5 7.6 5.1 6.2 7.2 1.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF972) CoA_binding PF02629.14 gi|390938863|ref|YP_006402601.1| - 6.8e-30 103.4 1.2 5.4e-29 100.5 0.3 2.2 2 0 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.1 gi|390938863|ref|YP_006402601.1| - 1.7e-16 60.1 0.0 4.9e-15 55.3 0.0 2.1 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain Ligase_CoA PF00549.14 gi|390938863|ref|YP_006402601.1| - 2.1e-15 56.6 0.0 3.8e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.1 gi|390938863|ref|YP_006402601.1| - 2.9e-08 33.8 0.0 6.9e-06 26.2 0.0 2.3 2 0 0 2 2 2 2 CoA binding domain GFO_IDH_MocA PF01408.17 gi|390938863|ref|YP_006402601.1| - 0.068 13.6 0.0 0.25 11.8 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.5 gi|390938864|ref|YP_006402602.1| - 3e-60 203.0 0.1 5.8e-60 202.1 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|390938864|ref|YP_006402602.1| - 2.2e-20 72.8 0.2 3.9e-20 72.0 0.2 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|390938864|ref|YP_006402602.1| - 2.7e-10 39.8 0.7 3.5e-09 36.2 0.5 2.3 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|390938864|ref|YP_006402602.1| - 4.8e-06 26.2 0.2 9.7e-06 25.2 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|390938864|ref|YP_006402602.1| - 1.8e-05 24.5 0.0 3.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|390938864|ref|YP_006402602.1| - 0.0064 16.0 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain ATP-grasp PF02222.17 gi|390938864|ref|YP_006402602.1| - 0.045 13.1 0.1 0.08 12.2 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain Flavin_Reduct PF01613.13 gi|390938865|ref|YP_006402603.1| - 1.2e-30 106.3 0.0 1.5e-30 106.1 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Pribosyltran PF00156.22 gi|390938866|ref|YP_006402604.1| - 2.4e-20 72.5 0.0 3.4e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|390938866|ref|YP_006402604.1| - 0.1 11.7 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PNP_UDP_1 PF01048.15 gi|390938867|ref|YP_006402605.1| - 8.9e-47 159.0 0.0 1e-46 158.8 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF2984 PF11203.3 gi|390938868|ref|YP_006402606.1| - 0.16 12.0 0.0 0.7 10.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2984) DUF3165 PF11364.3 gi|390938869|ref|YP_006402607.1| - 0.052 13.6 4.5 0.041 14.0 1.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3165) Polysacc_synt_3 PF13440.1 gi|390938869|ref|YP_006402607.1| - 0.11 11.9 11.2 0.13 11.6 7.7 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DUF3112 PF11309.3 gi|390938869|ref|YP_006402607.1| - 0.35 10.6 5.2 0.52 10.0 3.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3112) Bax1-I PF01027.15 gi|390938869|ref|YP_006402607.1| - 0.58 9.7 13.2 0.77 9.3 9.1 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4131 PF13567.1 gi|390938869|ref|YP_006402607.1| - 4.6 6.6 8.4 11 5.3 5.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) RimK PF08443.6 gi|390938870|ref|YP_006402608.1| - 2.2e-27 95.7 0.0 2.9e-27 95.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|390938870|ref|YP_006402608.1| - 3.7e-08 32.7 0.0 5.6e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|390938870|ref|YP_006402608.1| - 2.5e-07 30.6 0.0 3.9e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|390938870|ref|YP_006402608.1| - 1.7e-06 28.0 0.0 4e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Ins134_P3_kin PF05770.6 gi|390938870|ref|YP_006402608.1| - 1.2e-05 24.4 0.1 0.0032 16.5 0.0 2.2 1 1 1 2 2 2 2 Inositol 1, 3, 4-trisphosphate 5/6-kinase ATPgrasp_Ter PF15632.1 gi|390938870|ref|YP_006402608.1| - 6.5e-05 21.8 0.0 0.0041 15.9 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon MTBP_mid PF14919.1 gi|390938870|ref|YP_006402608.1| - 0.16 10.6 0.0 0.22 10.1 0.0 1.1 1 0 0 1 1 1 0 MDM2-binding PCP_red PF08369.5 gi|390938871|ref|YP_006402609.1| - 0.14 12.0 0.2 3 7.7 0.0 2.8 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit Radical_SAM PF04055.16 gi|390938872|ref|YP_006402610.1| - 4.5e-15 56.2 0.1 6.8e-15 55.6 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|390938872|ref|YP_006402610.1| - 4.9e-07 29.9 0.0 1.3e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|390938872|ref|YP_006402610.1| - 2e-05 24.6 0.0 4e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Orthopox_F6 PF06601.7 gi|390938873|ref|YP_006402611.1| - 0.047 13.6 0.2 0.095 12.6 0.1 1.5 1 0 0 1 1 1 0 Orthopoxvirus F6 protein tRNA-synt_1 PF00133.17 gi|390938874|ref|YP_006402612.1| - 4.3e-115 385.0 0.0 5.2e-114 381.4 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|390938874|ref|YP_006402612.1| - 9e-31 106.6 1.3 1.8e-30 105.7 0.9 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|390938874|ref|YP_006402612.1| - 6.6e-28 97.4 4.2 3.1e-13 49.1 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|390938874|ref|YP_006402612.1| - 2e-07 30.4 0.0 3.4e-05 23.2 0.0 2.5 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 zinc_ribbon_2 PF13240.1 gi|390938874|ref|YP_006402612.1| - 0.031 13.7 4.1 0.12 11.8 0.7 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Mut7-C PF01927.11 gi|390938874|ref|YP_006402612.1| - 0.034 14.1 1.3 19 5.1 0.2 3.9 2 2 0 2 2 2 0 Mut7-C RNAse domain DZR PF12773.2 gi|390938874|ref|YP_006402612.1| - 0.17 11.7 1.3 20 5.0 0.1 3.1 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|390938874|ref|YP_006402612.1| - 1.5 8.1 7.5 0.13 11.5 0.5 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|390938874|ref|YP_006402612.1| - 2.3 7.4 5.0 24 4.2 0.0 3.5 2 1 2 4 4 4 0 Transcription factor zinc-finger PHP_C PF13263.1 gi|390938875|ref|YP_006402613.1| - 1.9e-16 59.3 0.1 3.3e-16 58.5 0.1 1.3 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|390938875|ref|YP_006402613.1| - 3e-14 53.2 0.0 8e-14 51.8 0.0 1.7 1 1 0 1 1 1 1 PHP domain DZR PF12773.2 gi|390938876|ref|YP_006402614.1| - 0.0017 18.1 5.5 0.14 12.0 2.9 2.2 1 1 1 2 2 2 2 Double zinc ribbon zf-TFIIB PF13453.1 gi|390938876|ref|YP_006402614.1| - 0.0023 17.1 3.8 0.48 9.6 0.4 2.5 2 1 0 2 2 2 2 Transcription factor zinc-finger DUF4428 PF14471.1 gi|390938876|ref|YP_006402614.1| - 0.0092 15.7 2.0 0.0092 15.7 1.4 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4428) Zn-ribbon_8 PF09723.5 gi|390938876|ref|YP_006402614.1| - 0.0098 15.8 4.2 0.16 11.9 0.2 2.3 2 0 0 2 2 2 1 Zinc ribbon domain PHF5 PF03660.9 gi|390938876|ref|YP_006402614.1| - 0.0098 15.9 4.7 0.069 13.2 1.4 2.2 1 1 1 2 2 2 1 PHF5-like protein zf-RING_2 PF13639.1 gi|390938876|ref|YP_006402614.1| - 0.044 13.6 7.1 0.23 11.3 4.9 2.1 1 1 0 1 1 1 0 Ring finger domain RNHCP PF12647.2 gi|390938876|ref|YP_006402614.1| - 0.061 13.1 1.6 0.23 11.3 0.1 2.0 1 1 1 2 2 2 0 RNHCP domain Prok-RING_1 PF14446.1 gi|390938876|ref|YP_006402614.1| - 0.064 12.9 4.0 3.6 7.4 1.2 2.6 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.1 gi|390938876|ref|YP_006402614.1| - 0.11 12.1 9.2 4.2 7.1 6.4 2.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.6 gi|390938876|ref|YP_006402614.1| - 0.14 11.8 4.2 0.16 11.6 0.4 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|390938876|ref|YP_006402614.1| - 0.2 11.5 6.3 9.9 6.1 1.3 3.0 2 1 0 2 2 2 0 Rubredoxin PyrI_C PF02748.10 gi|390938876|ref|YP_006402614.1| - 0.2 11.0 6.0 0.41 10.1 2.6 2.1 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-Sec23_Sec24 PF04810.10 gi|390938876|ref|YP_006402614.1| - 0.26 10.8 5.0 8.1 6.1 0.0 2.7 2 1 0 2 2 2 0 Sec23/Sec24 zinc finger zf-MYND PF01753.13 gi|390938876|ref|YP_006402614.1| - 0.26 11.1 5.1 5.1 7.0 3.5 2.4 1 1 0 1 1 1 0 MYND finger A2L_zn_ribbon PF08792.5 gi|390938876|ref|YP_006402614.1| - 0.36 10.3 8.8 1.1 8.7 2.2 2.7 2 1 0 2 2 2 0 A2L zinc ribbon domain HypA PF01155.14 gi|390938876|ref|YP_006402614.1| - 0.37 10.4 2.9 4.4 7.0 2.0 2.0 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1272 PF06906.6 gi|390938876|ref|YP_006402614.1| - 0.45 10.4 6.6 1.1 9.2 0.2 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-C4_Topoisom PF01396.14 gi|390938876|ref|YP_006402614.1| - 0.56 9.7 4.5 14 5.3 0.2 3.0 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|390938876|ref|YP_006402614.1| - 0.66 9.8 7.4 9.9 6.0 5.2 2.4 1 1 0 1 1 1 0 zinc-ribbons zf-FPG_IleRS PF06827.9 gi|390938876|ref|YP_006402614.1| - 0.91 9.2 6.0 9.7 5.9 0.0 3.4 4 0 0 4 4 4 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.7 gi|390938876|ref|YP_006402614.1| - 0.97 8.8 11.8 1.9 7.8 0.6 2.7 2 1 1 3 3 3 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|390938876|ref|YP_006402614.1| - 1 9.2 9.6 3.6 7.4 0.3 2.7 1 1 2 3 3 3 0 Transposase zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|390938876|ref|YP_006402614.1| - 1 8.9 4.2 8.6 5.9 0.0 2.9 3 0 0 3 3 3 0 Ribosomal protein S27 zf-RING_5 PF14634.1 gi|390938876|ref|YP_006402614.1| - 1.2 8.8 9.5 4.2 7.1 3.3 2.8 1 1 1 2 2 2 0 zinc-RING finger domain PhnA_Zn_Ribbon PF08274.7 gi|390938876|ref|YP_006402614.1| - 1.6 8.5 6.9 5.9 6.7 0.1 2.7 3 0 0 3 3 2 0 PhnA Zinc-Ribbon UPF0547 PF10571.4 gi|390938876|ref|YP_006402614.1| - 1.9 8.2 6.4 16 5.2 0.0 3.3 4 0 0 4 4 3 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|390938876|ref|YP_006402614.1| - 3.1 7.1 12.9 5.8 6.2 0.1 3.4 4 0 0 4 4 3 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|390938876|ref|YP_006402614.1| - 3.9 7.4 8.4 2.5 8.0 0.4 2.8 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain zf-H2C2_2 PF13465.1 gi|390938876|ref|YP_006402614.1| - 3.9 7.9 10.9 5.9 7.3 0.6 3.2 3 0 0 3 3 3 0 Zinc-finger double domain Zn_Tnp_IS1 PF03811.8 gi|390938876|ref|YP_006402614.1| - 4.5 6.8 6.3 14 5.2 0.1 3.1 3 1 0 3 3 3 0 InsA N-terminal domain DUF2296 PF10058.4 gi|390938876|ref|YP_006402614.1| - 6.7 6.5 11.6 19 5.0 4.6 2.5 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) C1_1 PF00130.17 gi|390938876|ref|YP_006402614.1| - 7.1 6.4 7.4 1.8e+02 1.9 5.2 2.3 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-Di19 PF05605.7 gi|390938876|ref|YP_006402614.1| - 8.5 6.5 11.1 1.1 9.4 0.5 3.0 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Metallophos PF00149.23 gi|390938877|ref|YP_006402615.1| - 5e-10 39.0 1.2 4.4e-09 36.0 0.8 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|390938877|ref|YP_006402615.1| - 4.5e-08 33.0 0.2 1.1e-07 31.8 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HD PF01966.17 gi|390938879|ref|YP_006402617.1| - 2.8e-12 46.7 1.3 3.8e-12 46.2 0.1 1.8 2 1 0 2 2 2 1 HD domain DUF1886 PF09171.5 gi|390938880|ref|YP_006402618.1| - 2.9e-44 150.9 0.0 3.7e-44 150.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) Nitro_FeMo-Co PF02579.12 gi|390938881|ref|YP_006402619.1| - 2.4e-05 24.2 0.0 3.2e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF367 PF04034.8 gi|390938881|ref|YP_006402619.1| - 0.03 13.9 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF367) RNA_pol_Rpb6 PF01192.17 gi|390938881|ref|YP_006402619.1| - 0.071 12.8 0.5 0.13 12.0 0.0 1.6 2 0 0 2 2 2 0 RNA polymerase Rpb6 DUF2283 PF10049.4 gi|390938883|ref|YP_006402621.1| - 8.5e-06 25.5 0.5 1.1e-05 25.1 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF3876 PF12992.2 gi|390938883|ref|YP_006402621.1| - 0.084 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3876) Nol1_Nop2_Fmu PF01189.12 gi|390938885|ref|YP_006402623.1| - 3.6e-33 115.1 0.0 2.8e-32 112.2 0.0 1.9 2 0 0 2 2 2 1 NOL1/NOP2/sun family PUA PF01472.15 gi|390938885|ref|YP_006402623.1| - 1.1e-06 28.3 0.0 2.1e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_18 PF12847.2 gi|390938885|ref|YP_006402623.1| - 2.5e-06 28.0 0.0 4.1e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|390938885|ref|YP_006402623.1| - 1.9e-05 24.2 0.0 3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|390938885|ref|YP_006402623.1| - 8.1e-05 22.6 0.0 0.00016 21.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|390938885|ref|YP_006402623.1| - 0.053 13.4 0.0 0.1 12.5 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase zf-ribbon_3 PF13248.1 gi|390938886|ref|YP_006402624.1| - 4.7e-05 22.4 3.4 9.1e-05 21.5 2.3 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|390938886|ref|YP_006402624.1| - 0.00023 20.8 1.2 0.012 15.3 0.1 2.4 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|390938886|ref|YP_006402624.1| - 0.0017 18.1 0.3 0.0028 17.4 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|390938886|ref|YP_006402624.1| - 0.0073 15.9 0.3 0.0073 15.9 0.2 2.4 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-C4_Topoisom PF01396.14 gi|390938886|ref|YP_006402624.1| - 0.056 12.9 2.8 0.36 10.3 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Cript PF10235.4 gi|390938886|ref|YP_006402624.1| - 0.077 13.3 0.1 0.13 12.6 0.1 1.4 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT PIN PF01850.16 gi|390938886|ref|YP_006402624.1| - 0.082 13.2 0.1 0.11 12.7 0.1 1.3 1 0 0 1 1 1 0 PIN domain ADK_lid PF05191.9 gi|390938886|ref|YP_006402624.1| - 0.19 11.3 1.4 1 9.0 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid Nudix_N_2 PF14803.1 gi|390938886|ref|YP_006402624.1| - 0.29 10.8 2.4 16 5.3 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|390938886|ref|YP_006402624.1| - 0.57 9.7 5.9 2 7.9 4.1 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|390938886|ref|YP_006402624.1| - 0.59 10.0 2.4 1.1 9.1 1.6 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-TFIIB PF13453.1 gi|390938886|ref|YP_006402624.1| - 1.2 8.4 3.2 8.6 5.6 0.2 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|390938886|ref|YP_006402624.1| - 1.4 8.6 4.7 11 5.7 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NAD_kinase PF01513.16 gi|390938887|ref|YP_006402625.1| - 1.4e-25 89.6 0.4 1.7e-25 89.3 0.3 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|390938887|ref|YP_006402625.1| - 0.069 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Met_10 PF02475.11 gi|390938888|ref|YP_006402626.1| - 8.7e-44 149.5 0.0 1.2e-43 149.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|390938888|ref|YP_006402626.1| - 2.8e-06 27.3 0.0 6e-05 23.0 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|390938888|ref|YP_006402626.1| - 8e-06 25.1 0.0 1.2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|390938888|ref|YP_006402626.1| - 0.00082 19.9 0.0 0.002 18.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.12 gi|390938888|ref|YP_006402626.1| - 0.052 12.6 0.0 0.087 11.9 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase TRM PF02005.11 gi|390938888|ref|YP_006402626.1| - 0.099 11.5 0.0 0.16 10.8 0.0 1.4 1 1 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltrans_SAM PF10672.4 gi|390938888|ref|YP_006402626.1| - 0.13 11.0 0.1 0.26 10.1 0.0 1.5 2 0 0 2 2 2 0 S-adenosylmethionine-dependent methyltransferase Cons_hypoth95 PF03602.10 gi|390938888|ref|YP_006402626.1| - 0.15 11.4 0.0 0.31 10.3 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DUF371 PF04027.8 gi|390938889|ref|YP_006402627.1| - 3.1e-44 149.8 0.0 3.6e-44 149.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PCMT PF01135.14 gi|390938890|ref|YP_006402628.1| - 6.9e-69 231.5 0.0 7.8e-69 231.3 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|390938890|ref|YP_006402628.1| - 1.3e-12 47.5 0.0 1.8e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|390938890|ref|YP_006402628.1| - 2.4e-10 40.9 0.0 3.5e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|390938890|ref|YP_006402628.1| - 1.3e-09 38.0 0.0 1.9e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|390938890|ref|YP_006402628.1| - 5.3e-06 27.2 0.0 7.7e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|390938890|ref|YP_006402628.1| - 1.1e-05 25.0 0.0 1.6e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_11 PF08241.7 gi|390938890|ref|YP_006402628.1| - 0.0001 22.6 0.0 0.00015 22.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|390938890|ref|YP_006402628.1| - 0.0003 19.8 0.0 0.001 18.1 0.0 1.7 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|390938890|ref|YP_006402628.1| - 0.00034 20.9 0.0 0.00053 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|390938890|ref|YP_006402628.1| - 0.00069 18.7 0.0 0.001 18.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_32 PF13679.1 gi|390938890|ref|YP_006402628.1| - 0.00087 18.9 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|390938890|ref|YP_006402628.1| - 0.0013 17.9 0.0 0.0016 17.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|390938890|ref|YP_006402628.1| - 0.0069 16.1 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|390938890|ref|YP_006402628.1| - 0.025 13.9 0.0 0.046 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_28 PF02636.12 gi|390938890|ref|YP_006402628.1| - 0.068 12.5 0.0 0.088 12.1 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase F420_oxidored PF03807.12 gi|390938890|ref|YP_006402628.1| - 0.12 12.8 0.1 0.27 11.6 0.1 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent XPG_I PF00867.13 gi|390938891|ref|YP_006402629.1| - 8.6e-26 89.8 0.0 1.5e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|390938891|ref|YP_006402629.1| - 2.1e-20 72.8 0.0 3.9e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|390938891|ref|YP_006402629.1| - 0.00049 20.2 1.1 0.0012 19.0 0.1 2.2 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HTH_20 PF12840.2 gi|390938892|ref|YP_006402630.1| - 5.2e-06 26.1 0.0 6.2e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|390938892|ref|YP_006402630.1| - 0.034 13.9 0.1 0.045 13.5 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|390938892|ref|YP_006402630.1| - 0.092 12.4 0.0 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AAA PF00004.24 gi|390938893|ref|YP_006402631.1| - 2.3e-99 328.7 0.0 1.1e-49 168.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|390938893|ref|YP_006402631.1| - 4.4e-21 74.6 0.1 1.1e-20 73.3 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|390938893|ref|YP_006402631.1| - 8.8e-16 57.6 0.0 5.9e-07 28.7 0.0 3.5 3 1 1 4 4 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|390938893|ref|YP_006402631.1| - 3.9e-15 56.3 0.1 3e-06 27.3 0.0 3.3 2 2 1 3 3 3 2 AAA ATPase domain AAA_5 PF07728.9 gi|390938893|ref|YP_006402631.1| - 2.2e-14 53.3 0.7 1.4e-06 28.1 0.0 3.7 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|390938893|ref|YP_006402631.1| - 5.9e-14 52.3 0.0 6.7e-08 32.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|390938893|ref|YP_006402631.1| - 3.8e-13 49.7 0.6 2.5e-06 27.6 0.0 3.7 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|390938893|ref|YP_006402631.1| - 8.4e-13 49.2 0.1 2e-06 28.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|390938893|ref|YP_006402631.1| - 1.2e-11 44.6 0.0 1.1e-05 25.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|390938893|ref|YP_006402631.1| - 1.4e-11 44.3 0.0 9.4e-05 22.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|390938893|ref|YP_006402631.1| - 2.1e-11 43.1 0.4 0.00013 20.8 0.0 2.7 3 0 0 3 3 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|390938893|ref|YP_006402631.1| - 8.3e-11 41.3 0.0 0.0001 21.4 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin Arch_ATPase PF01637.13 gi|390938893|ref|YP_006402631.1| - 2.4e-09 37.2 1.9 0.076 12.7 0.1 4.1 2 2 2 4 4 4 3 Archaeal ATPase AAA_28 PF13521.1 gi|390938893|ref|YP_006402631.1| - 1.4e-08 34.8 0.0 0.0016 18.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|390938893|ref|YP_006402631.1| - 1.5e-08 34.2 0.4 0.0019 17.6 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|390938893|ref|YP_006402631.1| - 1.6e-08 34.6 0.0 0.0026 17.9 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|390938893|ref|YP_006402631.1| - 4.4e-08 33.5 0.0 0.0014 18.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|390938893|ref|YP_006402631.1| - 1.5e-07 30.8 0.2 0.013 14.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|390938893|ref|YP_006402631.1| - 2e-07 30.6 1.5 0.01 15.5 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain DUF815 PF05673.8 gi|390938893|ref|YP_006402631.1| - 3.3e-07 29.4 0.0 0.023 13.6 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|390938893|ref|YP_006402631.1| - 9.6e-07 28.3 7.4 0.097 12.0 0.1 4.2 2 2 1 4 4 4 2 AAA domain NACHT PF05729.7 gi|390938893|ref|YP_006402631.1| - 1.3e-06 28.2 0.2 0.19 11.3 0.0 3.8 4 0 0 4 4 4 2 NACHT domain AAA_24 PF13479.1 gi|390938893|ref|YP_006402631.1| - 1.3e-06 28.1 0.1 0.023 14.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|390938893|ref|YP_006402631.1| - 3.3e-06 26.3 0.5 0.22 10.5 0.0 3.5 2 1 1 3 3 3 2 KaiC ABC_tran PF00005.22 gi|390938893|ref|YP_006402631.1| - 3.4e-06 27.3 0.0 0.076 13.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter Sigma54_activat PF00158.21 gi|390938893|ref|YP_006402631.1| - 6e-06 25.8 0.0 0.068 12.6 0.0 3.1 2 1 0 2 2 2 2 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|390938893|ref|YP_006402631.1| - 6.1e-06 26.3 0.0 0.032 14.2 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|390938893|ref|YP_006402631.1| - 8e-06 25.4 0.0 0.046 13.3 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|390938893|ref|YP_006402631.1| - 1.3e-05 24.2 0.1 0.018 13.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.13 gi|390938893|ref|YP_006402631.1| - 1.4e-05 24.8 0.0 0.0079 15.8 0.0 2.6 2 1 0 2 2 2 1 Bacterial dnaA protein UPF0079 PF02367.12 gi|390938893|ref|YP_006402631.1| - 3.1e-05 23.6 0.0 0.7 9.5 0.0 3.4 3 0 0 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 PhoH PF02562.11 gi|390938893|ref|YP_006402631.1| - 0.00011 21.4 0.3 0.37 10.0 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein SKI PF01202.17 gi|390938893|ref|YP_006402631.1| - 0.0002 21.2 0.0 0.4 10.5 0.0 2.4 2 0 0 2 2 2 2 Shikimate kinase CDC48_2 PF02933.12 gi|390938893|ref|YP_006402631.1| - 0.0004 19.9 0.0 0.00089 18.8 0.0 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 NB-ARC PF00931.17 gi|390938893|ref|YP_006402631.1| - 0.00041 19.2 0.0 0.43 9.4 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.4 gi|390938893|ref|YP_006402631.1| - 0.00052 19.0 0.0 0.041 12.8 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|390938893|ref|YP_006402631.1| - 0.00052 19.7 0.1 2.6 7.7 0.0 3.6 2 1 1 3 3 3 0 NTPase T2SE PF00437.15 gi|390938893|ref|YP_006402631.1| - 0.0014 17.5 0.0 0.032 13.1 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|390938893|ref|YP_006402631.1| - 0.0024 17.3 0.0 1.2 8.5 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Viral_helicase1 PF01443.13 gi|390938893|ref|YP_006402631.1| - 0.0034 16.9 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Rad17 PF03215.10 gi|390938893|ref|YP_006402631.1| - 0.0057 15.3 0.0 0.77 8.3 0.0 2.6 2 1 1 3 3 3 1 Rad17 cell cycle checkpoint protein ResIII PF04851.10 gi|390938893|ref|YP_006402631.1| - 0.0062 16.3 0.0 0.96 9.2 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit KAP_NTPase PF07693.9 gi|390938893|ref|YP_006402631.1| - 0.0079 15.2 0.0 9.8 5.0 0.0 3.0 2 1 1 3 3 3 0 KAP family P-loop domain AAA_11 PF13086.1 gi|390938893|ref|YP_006402631.1| - 0.014 15.0 0.0 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|390938893|ref|YP_006402631.1| - 0.014 14.8 0.0 3 7.3 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AFG1_ATPase PF03969.11 gi|390938893|ref|YP_006402631.1| - 0.016 14.0 0.3 1.7 7.3 0.0 2.4 2 1 0 2 2 2 0 AFG1-like ATPase AAA_10 PF12846.2 gi|390938893|ref|YP_006402631.1| - 0.02 14.3 0.8 5.4 6.3 0.0 3.2 3 1 0 3 3 3 0 AAA-like domain Guanylate_kin PF00625.16 gi|390938893|ref|YP_006402631.1| - 0.028 13.8 0.1 15 4.9 0.0 3.6 2 2 2 4 4 3 0 Guanylate kinase SRPRB PF09439.5 gi|390938893|ref|YP_006402631.1| - 0.03 13.5 0.0 6.2 5.9 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit KTI12 PF08433.5 gi|390938893|ref|YP_006402631.1| - 0.031 13.4 0.1 0.8 8.8 0.0 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DAP3 PF10236.4 gi|390938893|ref|YP_006402631.1| - 0.033 13.1 0.0 3.1 6.6 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_30 PF13604.1 gi|390938893|ref|YP_006402631.1| - 0.049 13.2 0.0 3.4 7.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain IPT PF01745.11 gi|390938893|ref|YP_006402631.1| - 0.06 12.5 0.0 6.3 5.8 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase Cytidylate_kin2 PF13189.1 gi|390938893|ref|YP_006402631.1| - 0.093 12.6 0.0 11 5.9 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_23 PF13476.1 gi|390938893|ref|YP_006402631.1| - 0.11 12.8 0.1 14 5.9 0.0 2.6 3 0 0 3 3 2 0 AAA domain AAA_21 PF13304.1 gi|390938893|ref|YP_006402631.1| - 0.11 12.4 1.9 9.6 6.0 0.3 3.3 2 2 0 2 2 2 0 AAA domain PSI_PsaE PF02427.12 gi|390938893|ref|YP_006402631.1| - 0.12 11.8 0.2 0.26 10.6 0.1 1.5 1 0 0 1 1 1 0 Photosystem I reaction centre subunit IV / PsaE Vps4_C PF09336.5 gi|390938893|ref|YP_006402631.1| - 0.19 11.6 0.0 0.73 9.7 0.0 2.0 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain cobW PF02492.14 gi|390938893|ref|YP_006402631.1| - 0.22 10.9 0.5 22 4.4 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain HTH_45 PF14947.1 gi|390938894|ref|YP_006402632.1| - 1.4e-05 24.8 0.3 1.7e-05 24.5 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix ABC_tran PF00005.22 gi|390938895|ref|YP_006402633.1| - 2.1e-34 118.7 0.0 3.2e-34 118.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938895|ref|YP_006402633.1| - 5.8e-07 29.7 0.0 0.0069 16.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|390938895|ref|YP_006402633.1| - 9.1e-05 22.3 0.0 0.00019 21.3 0.0 1.6 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.12 gi|390938895|ref|YP_006402633.1| - 9.2e-05 22.4 0.1 0.0002 21.3 0.0 1.6 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|390938895|ref|YP_006402633.1| - 0.00053 19.2 0.1 0.0071 15.6 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|390938895|ref|YP_006402633.1| - 0.013 16.3 0.0 0.028 15.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|390938895|ref|YP_006402633.1| - 0.021 14.8 0.2 0.063 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.10 gi|390938895|ref|YP_006402633.1| - 0.031 12.9 0.0 0.048 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|390938895|ref|YP_006402633.1| - 0.034 13.6 0.0 0.078 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|390938895|ref|YP_006402633.1| - 0.036 14.2 0.1 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|390938895|ref|YP_006402633.1| - 0.049 13.0 0.0 0.083 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|390938895|ref|YP_006402633.1| - 0.058 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|390938895|ref|YP_006402633.1| - 0.086 13.1 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|390938895|ref|YP_006402633.1| - 0.11 11.5 0.0 0.36 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|390938895|ref|YP_006402633.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|390938895|ref|YP_006402633.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Miro PF08477.8 gi|390938895|ref|YP_006402633.1| - 0.13 12.7 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein 2-Hacid_dh_C PF02826.14 gi|390938896|ref|YP_006402634.1| - 2e-66 222.4 0.0 2.6e-66 222.1 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|390938896|ref|YP_006402634.1| - 1.4e-35 121.6 0.0 1.7e-35 121.4 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|390938896|ref|YP_006402634.1| - 1.2e-06 28.4 0.0 2.2e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|390938896|ref|YP_006402634.1| - 2.5e-05 24.1 0.0 5.3e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|390938896|ref|YP_006402634.1| - 5.1e-05 22.6 0.0 8.5e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|390938896|ref|YP_006402634.1| - 0.071 13.3 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding XdhC_C PF13478.1 gi|390938896|ref|YP_006402634.1| - 0.1 12.9 0.0 0.26 11.5 0.0 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain KH_5 PF13184.1 gi|390938897|ref|YP_006402635.1| - 4e-11 42.5 0.9 5.4e-11 42.1 0.1 1.6 2 0 0 2 2 2 1 NusA-like KH domain TruD PF01142.13 gi|390938898|ref|YP_006402636.1| - 4.2e-43 147.4 0.0 8.7e-36 123.3 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) Peptidase_S24 PF00717.18 gi|390938898|ref|YP_006402636.1| - 0.13 11.9 1.1 1.8 8.2 0.0 2.9 3 0 0 3 3 3 0 Peptidase S24-like PTH2 PF01981.11 gi|390938899|ref|YP_006402637.1| - 2.9e-45 152.6 0.0 3.2e-45 152.5 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF1610 PF07754.6 gi|390938900|ref|YP_006402638.1| - 2.2e-09 37.2 19.3 1.1e-06 28.5 4.5 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|390938900|ref|YP_006402638.1| - 0.0003 20.5 12.1 0.025 14.3 8.7 2.6 1 1 1 2 2 2 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|390938900|ref|YP_006402638.1| - 0.0008 19.0 7.8 0.0067 16.0 0.1 2.2 1 1 1 2 2 2 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|390938900|ref|YP_006402638.1| - 0.0013 17.9 17.8 0.029 13.5 3.1 3.2 1 1 3 4 4 4 3 zinc-ribbon domain DUF1272 PF06906.6 gi|390938900|ref|YP_006402638.1| - 0.0041 16.9 9.4 0.068 13.0 1.0 2.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1272) PSCyt3 PF07627.6 gi|390938900|ref|YP_006402638.1| - 0.014 15.2 0.2 0.014 15.2 0.1 1.6 1 1 1 2 2 1 0 Protein of unknown function (DUF1588) PolC_DP2 PF03833.8 gi|390938900|ref|YP_006402638.1| - 0.015 12.9 3.1 0.015 12.9 2.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 tRNA-synt_1f PF01921.13 gi|390938900|ref|YP_006402638.1| - 0.021 13.5 1.1 0.025 13.2 0.8 1.3 1 1 0 1 1 1 0 tRNA synthetases class I (K) Acetone_carb_G PF08882.6 gi|390938900|ref|YP_006402638.1| - 0.037 14.0 5.3 0.87 9.6 0.4 2.3 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-B_box PF00643.19 gi|390938900|ref|YP_006402638.1| - 0.041 13.7 11.4 0.22 11.4 1.0 2.3 1 1 1 2 2 2 0 B-box zinc finger HypA PF01155.14 gi|390938900|ref|YP_006402638.1| - 0.042 13.5 6.4 0.051 13.2 1.4 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|390938900|ref|YP_006402638.1| - 0.098 12.1 14.6 1.1 8.8 0.9 3.0 2 2 0 2 2 2 0 A2L zinc ribbon domain DUF4503 PF14951.1 gi|390938900|ref|YP_006402638.1| - 0.1 10.7 1.1 0.11 10.6 0.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) DRP PF06044.7 gi|390938900|ref|YP_006402638.1| - 0.11 11.4 2.3 0.13 11.2 1.6 1.1 1 0 0 1 1 1 0 Dam-replacing family zinc_ribbon_2 PF13240.1 gi|390938900|ref|YP_006402638.1| - 0.14 11.6 0.4 0.14 11.6 0.3 3.6 3 1 0 3 3 3 0 zinc-ribbon domain C1_1 PF00130.17 gi|390938900|ref|YP_006402638.1| - 0.16 11.7 7.6 11 5.8 5.3 2.2 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-Mss51 PF13824.1 gi|390938900|ref|YP_006402638.1| - 0.23 11.3 9.1 1 9.2 1.2 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Spt4 PF06093.8 gi|390938900|ref|YP_006402638.1| - 0.25 11.2 8.6 0.83 9.5 0.2 2.2 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger zinc_ribbon_4 PF13717.1 gi|390938900|ref|YP_006402638.1| - 0.31 10.7 12.8 6.5 6.5 0.0 4.0 4 0 0 4 4 4 0 zinc-ribbon domain DUF2321 PF10083.4 gi|390938900|ref|YP_006402638.1| - 0.35 10.3 3.6 0.55 9.7 2.5 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) zinc_ribbon_5 PF13719.1 gi|390938900|ref|YP_006402638.1| - 0.38 10.3 12.9 5.8 6.5 0.1 3.9 4 0 0 4 4 4 0 zinc-ribbon domain ADK_lid PF05191.9 gi|390938900|ref|YP_006402638.1| - 0.45 10.2 11.4 5.4 6.7 0.2 3.8 3 1 1 4 4 4 0 Adenylate kinase, active site lid zf-RING_5 PF14634.1 gi|390938900|ref|YP_006402638.1| - 0.64 9.8 10.6 4.3 7.1 7.4 2.1 1 1 0 1 1 1 0 zinc-RING finger domain Dynactin_p62 PF05502.8 gi|390938900|ref|YP_006402638.1| - 0.67 8.6 5.4 0.9 8.2 3.7 1.3 1 0 0 1 1 1 0 Dynactin p62 family Sgf11 PF08209.6 gi|390938900|ref|YP_006402638.1| - 0.7 9.2 15.1 1.3 8.4 0.1 3.8 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) DUF2296 PF10058.4 gi|390938900|ref|YP_006402638.1| - 0.76 9.5 16.0 2.9 7.6 0.2 3.7 2 2 1 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Mu-like_Com PF10122.4 gi|390938900|ref|YP_006402638.1| - 0.8 8.8 9.5 0.93 8.5 0.0 2.7 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C2H2_jaz PF12171.3 gi|390938900|ref|YP_006402638.1| - 0.85 9.8 0.1 0.85 9.8 0.1 2.7 3 0 0 3 3 3 0 Zinc-finger double-stranded RNA-binding zinc-ribbons_6 PF07191.7 gi|390938900|ref|YP_006402638.1| - 1 9.1 9.0 10 6.0 4.3 2.3 1 1 0 1 1 1 0 zinc-ribbons Rpr2 PF04032.11 gi|390938900|ref|YP_006402638.1| - 1.2 9.0 9.8 1.1 9.1 3.4 2.7 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF2072 PF09845.4 gi|390938900|ref|YP_006402638.1| - 1.2 9.0 10.1 1 9.2 2.1 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) DUF35_N PF12172.3 gi|390938900|ref|YP_006402638.1| - 1.2 9.1 13.0 0.25 11.2 1.4 3.3 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF164 PF02591.10 gi|390938900|ref|YP_006402638.1| - 1.2 8.9 14.0 5.9 6.8 0.1 3.8 3 1 0 3 3 3 0 Putative zinc ribbon domain UPF0547 PF10571.4 gi|390938900|ref|YP_006402638.1| - 1.6 8.5 22.5 0.3 10.8 10.2 3.0 2 1 0 2 2 1 0 Uncharacterised protein family UPF0547 zf-MYND PF01753.13 gi|390938900|ref|YP_006402638.1| - 1.7 8.5 10.9 56 3.7 7.8 2.4 1 1 1 2 2 2 0 MYND finger Nudix_N_2 PF14803.1 gi|390938900|ref|YP_006402638.1| - 2 8.1 13.0 2.1 8.1 0.6 3.7 3 1 1 4 4 4 0 Nudix N-terminal NOB1_Zn_bind PF08772.6 gi|390938900|ref|YP_006402638.1| - 2.2 8.1 10.9 1 9.2 2.0 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-HIT PF04438.11 gi|390938900|ref|YP_006402638.1| - 2.3 7.9 17.0 0.85 9.3 4.7 2.9 2 2 0 2 2 2 0 HIT zinc finger zf-AN1 PF01428.11 gi|390938900|ref|YP_006402638.1| - 2.8 7.9 12.9 4.7 7.1 2.4 2.8 2 1 1 3 3 3 0 AN1-like Zinc finger Ribosomal_L44 PF00935.14 gi|390938900|ref|YP_006402638.1| - 2.8 7.9 7.8 2.9 7.9 2.9 2.1 1 1 1 2 2 2 0 Ribosomal protein L44 Zn_ribbon_recom PF13408.1 gi|390938900|ref|YP_006402638.1| - 3.3 8.0 10.6 0.26 11.5 4.1 1.5 2 0 0 2 2 1 0 Recombinase zinc beta ribbon domain zf-RING-like PF08746.6 gi|390938900|ref|YP_006402638.1| - 4.1 7.4 8.1 13 5.9 1.0 3.2 3 1 0 3 3 3 0 RING-like domain TF_Zn_Ribbon PF08271.7 gi|390938900|ref|YP_006402638.1| - 4.3 6.7 18.4 1.3 8.4 2.4 3.1 2 2 0 2 2 2 0 TFIIB zinc-binding Nop10p PF04135.7 gi|390938900|ref|YP_006402638.1| - 4.4 7.1 6.6 2.8 7.7 1.2 2.2 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family Zn_Tnp_IS1595 PF12760.2 gi|390938900|ref|YP_006402638.1| - 6.2 6.7 18.1 21 5.0 0.2 3.4 2 1 1 3 3 3 0 Transposase zinc-ribbon domain TerY-C PF15616.1 gi|390938900|ref|YP_006402638.1| - 6.3 6.7 9.2 1.8 8.5 4.2 1.6 1 1 0 1 1 1 0 TerY-C metal binding domain Zn-ribbon_8 PF09723.5 gi|390938900|ref|YP_006402638.1| - 7 6.6 18.8 31 4.6 0.1 4.0 2 1 0 2 2 2 0 Zinc ribbon domain zf-C3HC4_2 PF13923.1 gi|390938900|ref|YP_006402638.1| - 9.6 6.3 10.7 19 5.3 7.4 1.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) EF1_GNE PF00736.14 gi|390938901|ref|YP_006402639.1| - 2.8e-22 78.2 0.1 3e-22 78.1 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain TrkA_N PF02254.13 gi|390938902|ref|YP_006402640.1| - 9.3e-16 57.8 1.7 1.4e-15 57.3 1.2 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|390938902|ref|YP_006402640.1| - 0.00012 22.2 0.0 0.00021 21.4 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_C PF02080.16 gi|390938902|ref|YP_006402640.1| - 0.0048 16.4 2.2 0.0066 16.0 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain CPSase_L_chain PF00289.17 gi|390938902|ref|YP_006402640.1| - 0.01 15.9 0.0 0.016 15.3 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain F420_oxidored PF03807.12 gi|390938902|ref|YP_006402640.1| - 0.017 15.5 0.2 0.076 13.4 0.0 2.2 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|390938902|ref|YP_006402640.1| - 0.047 14.2 0.0 0.073 13.5 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|390938902|ref|YP_006402640.1| - 0.11 11.3 0.1 0.33 9.8 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase MS_channel PF00924.13 gi|390938903|ref|YP_006402641.1| - 0.0002 20.7 2.6 0.0002 20.7 1.8 2.3 1 1 2 3 3 3 1 Mechanosensitive ion channel UPF0004 PF00919.15 gi|390938904|ref|YP_006402642.1| - 8.1e-22 76.9 0.1 1.6e-21 75.9 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|390938904|ref|YP_006402642.1| - 1.5e-21 77.2 0.3 5.6e-21 75.4 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.15 gi|390938904|ref|YP_006402642.1| - 0.0016 18.1 0.0 0.0076 16.0 0.0 2.0 2 0 0 2 2 2 1 TRAM domain eIF-5_eIF-2B PF01873.12 gi|390938905|ref|YP_006402643.1| - 1.1e-31 109.1 0.1 1.3e-31 108.8 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Zn_Tnp_IS1595 PF12760.2 gi|390938905|ref|YP_006402643.1| - 0.017 14.9 0.4 0.029 14.1 0.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|390938905|ref|YP_006402643.1| - 0.021 14.4 1.3 0.036 13.7 0.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Elf1 PF05129.8 gi|390938905|ref|YP_006402643.1| - 0.022 14.4 0.4 0.035 13.8 0.3 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF678 PF05077.7 gi|390938905|ref|YP_006402643.1| - 0.039 13.9 1.7 3.7 7.5 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF678) DUF2066 PF09839.4 gi|390938905|ref|YP_006402643.1| - 0.064 12.3 0.0 0.086 11.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2066) HypA PF01155.14 gi|390938905|ref|YP_006402643.1| - 0.069 12.8 0.5 0.094 12.4 0.4 1.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|390938905|ref|YP_006402643.1| - 0.1 12.2 0.7 7.3 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PGAP1 PF07819.8 gi|390938905|ref|YP_006402643.1| - 0.11 12.1 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 PGAP1-like protein zinc_ribbon_4 PF13717.1 gi|390938905|ref|YP_006402643.1| - 0.11 12.2 0.6 8.1 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|390938905|ref|YP_006402643.1| - 0.15 11.9 1.7 0.45 10.5 1.2 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_S27e PF01667.12 gi|390938905|ref|YP_006402643.1| - 0.83 9.2 3.5 4.5 6.8 0.5 2.5 1 1 1 2 2 2 0 Ribosomal protein S27 Zn_ribbon_recom PF13408.1 gi|390938905|ref|YP_006402643.1| - 1.3 9.3 6.8 0.87 9.9 3.0 2.0 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain DUF424 PF04242.8 gi|390938906|ref|YP_006402644.1| - 6.1e-21 74.2 0.1 7.5e-21 73.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.8 gi|390938907|ref|YP_006402645.1| - 2.4e-34 118.4 0.7 2.9e-34 118.2 0.5 1.1 1 0 0 1 1 1 1 NMD3 family DUF2209 PF09974.4 gi|390938907|ref|YP_006402645.1| - 0.0051 16.8 0.6 0.013 15.6 0.4 1.7 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) Prok-RING_1 PF14446.1 gi|390938907|ref|YP_006402645.1| - 0.023 14.4 7.5 0.16 11.7 0.5 2.7 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 FBA_3 PF08268.7 gi|390938907|ref|YP_006402645.1| - 0.036 13.8 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 F-box associated domain zinc_ribbon_2 PF13240.1 gi|390938907|ref|YP_006402645.1| - 0.037 13.5 3.1 3 7.4 0.3 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|390938907|ref|YP_006402645.1| - 0.07 12.9 6.2 0.49 10.2 2.8 2.7 2 1 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|390938907|ref|YP_006402645.1| - 0.071 12.3 0.6 11 5.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Antitoxin-MazE PF04014.13 gi|390938907|ref|YP_006402645.1| - 0.078 12.7 0.1 0.078 12.7 0.0 3.1 3 0 0 3 3 3 0 Antidote-toxin recognition MazE C1_1 PF00130.17 gi|390938907|ref|YP_006402645.1| - 7.3 6.4 7.6 0.37 10.5 0.6 2.2 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) eIF-1a PF01176.14 gi|390938908|ref|YP_006402646.1| - 2.2e-19 68.6 0.4 2.9e-19 68.2 0.3 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|390938909|ref|YP_006402647.1| - 6.6e-61 204.9 0.0 9e-61 204.5 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|390938909|ref|YP_006402647.1| - 5.2e-06 26.3 0.2 0.0048 16.6 0.0 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|390938909|ref|YP_006402647.1| - 8.1e-06 25.0 0.1 0.001 18.1 0.0 2.3 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|390938909|ref|YP_006402647.1| - 0.0018 17.4 0.1 0.0031 16.7 0.1 1.5 1 1 0 1 1 1 1 Protein kinase domain KH_1 PF00013.24 gi|390938910|ref|YP_006402648.1| - 1.2e-09 37.6 0.8 0.00024 20.6 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|390938910|ref|YP_006402648.1| - 2.4e-06 27.0 0.1 0.0066 16.0 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|390938910|ref|YP_006402648.1| - 0.12 12.0 0.7 8.8 5.9 0.1 2.6 2 0 0 2 2 2 0 KH domain EamA PF00892.15 gi|390938911|ref|YP_006402649.1| - 6.6e-18 64.9 18.7 7.7e-18 64.7 13.0 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|390938911|ref|YP_006402649.1| - 3.8e-07 30.3 13.2 3.8e-07 30.3 9.2 1.6 2 0 0 2 2 2 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|390938911|ref|YP_006402649.1| - 0.003 17.2 14.3 0.005 16.5 9.9 1.3 1 0 0 1 1 1 1 Triose-phosphate Transporter family UAA PF08449.6 gi|390938911|ref|YP_006402649.1| - 0.024 13.5 11.0 0.03 13.2 7.6 1.0 1 0 0 1 1 1 0 UAA transporter family Multi_Drug_Res PF00893.14 gi|390938911|ref|YP_006402649.1| - 0.094 13.1 13.8 0.058 13.8 2.7 2.2 1 1 1 2 2 2 0 Small Multidrug Resistance protein UPF0546 PF10639.4 gi|390938911|ref|YP_006402649.1| - 0.31 10.8 6.1 0.072 12.9 1.4 1.7 1 1 0 2 2 2 0 Uncharacterised protein family UPF0546 Nuc_sug_transp PF04142.10 gi|390938911|ref|YP_006402649.1| - 1.6 7.7 11.1 0.33 10.0 1.1 2.1 2 0 0 2 2 2 0 Nucleotide-sugar transporter ABC2_membrane_5 PF13346.1 gi|390938911|ref|YP_006402649.1| - 2.8 7.1 22.0 0.37 10.0 11.5 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein Pox_A14 PF05767.7 gi|390938911|ref|YP_006402649.1| - 8 6.5 10.4 0.87 9.5 1.0 2.4 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 TrkH PF02386.11 gi|390938912|ref|YP_006402650.1| - 5.5e-42 143.6 40.5 4.5e-41 140.5 19.5 2.3 1 1 1 2 2 2 2 Cation transport protein DUF3377 PF11857.3 gi|390938912|ref|YP_006402650.1| - 1.4 8.6 5.0 0.36 10.4 0.2 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF3377) DctM PF06808.7 gi|390938913|ref|YP_006402651.1| - 2.3e-77 260.3 59.1 2.7e-77 260.0 41.0 1.0 1 0 0 1 1 1 1 DctM-like transporters CitMHS PF03600.11 gi|390938913|ref|YP_006402651.1| - 0.3 9.6 55.0 0.095 11.2 31.5 2.5 1 1 1 2 2 2 0 Citrate transporter DctQ PF04290.7 gi|390938914|ref|YP_006402652.1| - 1.9e-18 66.4 7.4 1.9e-18 66.4 5.2 1.5 1 1 1 2 2 2 1 Tripartite ATP-independent periplasmic transporters, DctQ component DUF2663 PF10864.3 gi|390938914|ref|YP_006402652.1| - 1.6 8.9 4.1 0.73 10.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2663) SBP_bac_7 PF03480.8 gi|390938915|ref|YP_006402653.1| - 1.5e-51 175.2 0.0 1.9e-51 174.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 CitMHS PF03600.11 gi|390938915|ref|YP_006402653.1| - 5 5.5 9.3 5 5.6 2.0 2.7 3 0 0 3 3 3 0 Citrate transporter adh_short_C2 PF13561.1 gi|390938916|ref|YP_006402654.1| - 2.6e-36 125.6 0.0 3.1e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|390938916|ref|YP_006402654.1| - 8.8e-35 120.0 0.0 1.1e-34 119.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|390938916|ref|YP_006402654.1| - 1.9e-15 56.9 0.0 2.6e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|390938916|ref|YP_006402654.1| - 0.0011 19.0 0.0 0.003 17.5 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|390938916|ref|YP_006402654.1| - 0.0012 18.2 0.1 0.0021 17.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.15 gi|390938916|ref|YP_006402654.1| - 0.0058 16.7 0.3 0.012 15.6 0.2 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Polysacc_synt_2 PF02719.10 gi|390938916|ref|YP_006402654.1| - 0.0067 15.3 0.1 0.01 14.7 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein AdoHcyase_NAD PF00670.16 gi|390938916|ref|YP_006402654.1| - 0.015 15.1 0.3 0.023 14.5 0.2 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3Beta_HSD PF01073.14 gi|390938916|ref|YP_006402654.1| - 0.058 12.0 0.1 0.077 11.6 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family THF_DHG_CYH_C PF02882.14 gi|390938916|ref|YP_006402654.1| - 0.063 12.3 0.1 0.18 10.9 0.1 1.9 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF2493 PF10686.4 gi|390938916|ref|YP_006402654.1| - 0.065 12.7 0.1 0.26 10.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2493) Epimerase PF01370.16 gi|390938917|ref|YP_006402655.1| - 1.6e-49 168.5 0.0 2e-49 168.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|390938917|ref|YP_006402655.1| - 2e-26 92.5 0.0 2.6e-26 92.1 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|390938917|ref|YP_006402655.1| - 9.9e-26 90.0 0.0 3e-25 88.4 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|390938917|ref|YP_006402655.1| - 6.6e-17 62.0 0.0 8.9e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|390938917|ref|YP_006402655.1| - 3.5e-16 58.9 3.1 1.5e-15 56.8 1.0 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|390938917|ref|YP_006402655.1| - 4.1e-16 58.6 0.6 2.3e-12 46.4 0.0 2.9 2 1 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|390938917|ref|YP_006402655.1| - 1.1e-08 35.2 0.0 3.1e-08 33.7 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|390938917|ref|YP_006402655.1| - 6.1e-05 22.7 0.2 0.00036 20.2 0.1 2.1 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|390938917|ref|YP_006402655.1| - 6.1e-05 22.3 0.1 0.00013 21.3 0.1 1.5 1 1 0 1 1 1 1 NmrA-like family F420_oxidored PF03807.12 gi|390938917|ref|YP_006402655.1| - 0.002 18.5 0.0 0.0049 17.2 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|390938917|ref|YP_006402655.1| - 0.003 16.6 0.1 0.0058 15.6 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|390938917|ref|YP_006402655.1| - 0.013 15.4 0.3 0.026 14.4 0.0 1.7 2 0 0 2 2 2 0 TrkA-N domain Glyco_transf_4 PF13439.1 gi|390938917|ref|YP_006402655.1| - 0.057 13.1 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Epimerase_Csub PF13950.1 gi|390938917|ref|YP_006402655.1| - 0.09 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit DAO PF01266.19 gi|390938917|ref|YP_006402655.1| - 0.12 11.2 0.1 0.21 10.4 0.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase ApbA PF02558.11 gi|390938917|ref|YP_006402655.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|390938917|ref|YP_006402655.1| - 0.14 11.9 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HTH_10 PF04967.7 gi|390938918|ref|YP_006402656.1| - 1.4e-12 47.0 0.2 3.1e-12 45.8 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|390938918|ref|YP_006402656.1| - 0.0013 18.0 0.3 0.002 17.3 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|390938918|ref|YP_006402656.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family 2-Hacid_dh_C PF02826.14 gi|390938919|ref|YP_006402657.1| - 4.9e-59 198.4 0.0 7.2e-59 197.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|390938919|ref|YP_006402657.1| - 2.7e-25 88.3 0.2 4e-25 87.8 0.2 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|390938919|ref|YP_006402657.1| - 3.5e-08 33.4 0.0 7.8e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|390938919|ref|YP_006402657.1| - 1.1e-05 25.4 0.1 8.7e-05 22.6 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|390938919|ref|YP_006402657.1| - 0.0002 21.7 0.1 0.00071 19.9 0.0 2.1 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|390938919|ref|YP_006402657.1| - 0.00043 20.4 0.1 0.0058 16.8 0.0 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding Gp_dh_N PF00044.19 gi|390938919|ref|YP_006402657.1| - 0.0015 18.4 0.1 0.0026 17.7 0.1 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|390938919|ref|YP_006402657.1| - 0.0024 18.3 0.0 0.0057 17.1 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|390938919|ref|YP_006402657.1| - 0.0044 16.0 0.0 0.0092 14.9 0.0 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|390938919|ref|YP_006402657.1| - 0.0057 16.6 0.0 0.021 14.7 0.0 2.0 2 0 0 2 2 2 1 TrkA-N domain PNP_UDP_1 PF01048.15 gi|390938919|ref|YP_006402657.1| - 0.012 14.6 0.1 0.18 10.7 0.0 2.2 1 1 0 2 2 2 0 Phosphorylase superfamily Shikimate_DH PF01488.15 gi|390938919|ref|YP_006402657.1| - 0.022 14.8 0.7 0.21 11.6 0.5 2.4 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|390938919|ref|YP_006402657.1| - 0.057 13.2 0.5 5.1 6.9 0.1 2.5 1 1 1 2 2 2 0 ThiF family IlvN PF07991.7 gi|390938919|ref|YP_006402657.1| - 0.06 12.7 0.0 0.18 11.1 0.0 1.8 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain DHDPS PF00701.17 gi|390938920|ref|YP_006402658.1| - 8.3e-54 182.1 0.0 9.5e-54 181.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HSDR_N_2 PF13588.1 gi|390938920|ref|YP_006402658.1| - 0.0031 17.3 0.0 0.0058 16.4 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Radical_SAM PF04055.16 gi|390938920|ref|YP_006402658.1| - 0.074 13.2 0.0 3.5 7.7 0.0 2.7 2 2 0 2 2 2 0 Radical SAM superfamily FGGY_N PF00370.16 gi|390938921|ref|YP_006402659.1| - 2.4e-30 105.6 0.0 3.2e-30 105.2 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|390938921|ref|YP_006402659.1| - 2e-08 34.0 0.0 2.8e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain tRNA-synt_2c PF01411.14 gi|390938922|ref|YP_006402660.1| - 1.7e-90 303.9 0.0 4.2e-49 167.2 0.0 2.2 1 1 0 2 2 2 2 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|390938922|ref|YP_006402660.1| - 3.6e-11 42.7 0.1 1.2e-10 41.0 0.1 2.0 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.10 gi|390938922|ref|YP_006402660.1| - 0.00035 19.7 0.1 0.00062 18.9 0.1 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Ribosomal_60s PF00428.14 gi|390938923|ref|YP_006402661.1| - 5.6e-17 61.9 16.7 6.5e-17 61.7 11.6 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.1 gi|390938923|ref|YP_006402661.1| - 0.013 15.4 6.4 0.12 12.3 0.1 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Ribonuc_L-PSP PF01042.16 gi|390938923|ref|YP_006402661.1| - 0.03 14.1 0.8 0.037 13.7 0.6 1.2 1 0 0 1 1 1 0 Endoribonuclease L-PSP SHS2_FTSA PF02491.15 gi|390938923|ref|YP_006402661.1| - 0.24 11.3 1.5 5.4 6.9 0.1 2.3 1 1 1 2 2 2 0 SHS2 domain inserted in FTSA Ribosomal_L10 PF00466.15 gi|390938924|ref|YP_006402662.1| - 1.9e-22 79.0 0.1 4.6e-22 77.8 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|390938924|ref|YP_006402662.1| - 1 9.8 11.7 2 8.8 7.8 1.8 1 1 0 1 1 1 0 60s Acidic ribosomal protein Ribosomal_L1 PF00687.16 gi|390938925|ref|YP_006402663.1| - 1.5e-38 132.3 0.0 1.7e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Peptidase_M17_N PF02789.12 gi|390938925|ref|YP_006402663.1| - 0.12 12.0 0.4 0.21 11.3 0.3 1.4 1 0 0 1 1 1 0 Cytosol aminopeptidase family, N-terminal domain Ribosomal_L11_N PF03946.9 gi|390938926|ref|YP_006402664.1| - 6.9e-24 83.0 0.4 1.2e-23 82.2 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|390938926|ref|YP_006402664.1| - 8.8e-22 77.0 1.3 1.4e-21 76.4 0.9 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain KGK PF08872.5 gi|390938926|ref|YP_006402664.1| - 0.067 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 KGK domain Spt5-NGN PF03439.8 gi|390938927|ref|YP_006402665.1| - 2.8e-17 62.2 0.1 4e-17 61.7 0.1 1.2 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|390938927|ref|YP_006402665.1| - 6.7e-07 28.7 0.2 9.5e-06 25.1 0.0 2.3 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|390938927|ref|YP_006402665.1| - 0.027 14.6 0.0 0.055 13.7 0.0 1.5 1 0 0 1 1 1 0 Transcription termination factor nusG SRP54 PF00448.17 gi|390938929|ref|YP_006402667.1| - 4.1e-69 231.9 0.0 5.5e-69 231.5 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|390938929|ref|YP_006402667.1| - 7.9e-09 35.5 4.5 7.9e-09 35.5 3.1 1.6 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain cobW PF02492.14 gi|390938929|ref|YP_006402667.1| - 1.2e-05 24.8 0.1 4.7e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|390938929|ref|YP_006402667.1| - 0.00025 20.6 0.0 0.00041 19.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|390938929|ref|YP_006402667.1| - 0.0012 18.5 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|390938929|ref|YP_006402667.1| - 0.0014 18.0 4.2 0.01 15.2 1.0 2.8 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|390938929|ref|YP_006402667.1| - 0.0028 16.4 1.0 0.029 13.1 0.3 2.3 1 1 0 1 1 1 1 ArgK protein AAA_19 PF13245.1 gi|390938929|ref|YP_006402667.1| - 0.0049 16.6 0.5 0.026 14.2 0.1 2.3 1 1 1 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|390938929|ref|YP_006402667.1| - 0.0061 16.6 0.8 0.092 12.8 0.1 2.7 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|390938929|ref|YP_006402667.1| - 0.0085 15.9 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|390938929|ref|YP_006402667.1| - 0.0099 15.2 0.4 0.48 9.7 0.0 2.9 3 0 0 3 3 3 1 Thymidylate kinase Arf PF00025.16 gi|390938929|ref|YP_006402667.1| - 0.014 14.6 0.1 0.078 12.2 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family ArsA_ATPase PF02374.10 gi|390938929|ref|YP_006402667.1| - 0.014 14.4 0.4 0.03 13.3 0.0 1.6 2 0 0 2 2 2 0 Anion-transporting ATPase DAP3 PF10236.4 gi|390938929|ref|YP_006402667.1| - 0.024 13.5 0.0 0.047 12.6 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Zeta_toxin PF06414.7 gi|390938929|ref|YP_006402667.1| - 0.029 13.4 0.0 0.056 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.18 gi|390938929|ref|YP_006402667.1| - 0.039 13.9 2.3 0.089 12.7 0.3 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|390938929|ref|YP_006402667.1| - 0.039 13.4 0.1 0.19 11.2 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.1 gi|390938929|ref|YP_006402667.1| - 0.039 13.8 0.0 0.088 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Peripla_BP_6 PF13458.1 gi|390938929|ref|YP_006402667.1| - 0.042 13.2 0.1 0.077 12.3 0.0 1.5 2 0 0 2 2 2 0 Periplasmic binding protein AAA PF00004.24 gi|390938929|ref|YP_006402667.1| - 0.05 13.7 0.2 0.12 12.5 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_31 PF13614.1 gi|390938929|ref|YP_006402667.1| - 0.07 13.0 0.1 2 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|390938929|ref|YP_006402667.1| - 0.071 12.8 1.8 0.4 10.3 0.3 2.5 2 1 0 2 2 2 0 NTPase Miro PF08477.8 gi|390938929|ref|YP_006402667.1| - 0.08 13.4 0.1 0.25 11.8 0.1 1.9 1 1 0 1 1 1 0 Miro-like protein AAA_24 PF13479.1 gi|390938929|ref|YP_006402667.1| - 0.086 12.4 0.3 0.2 11.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|390938929|ref|YP_006402667.1| - 0.12 12.4 1.4 0.36 10.7 0.0 2.3 3 0 0 3 3 3 0 AAA ATPase domain Prefoldin PF02996.12 gi|390938930|ref|YP_006402668.1| - 5.9e-14 51.7 0.1 7.4e-14 51.4 0.1 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|390938930|ref|YP_006402668.1| - 1.1e-06 28.3 1.4 0.007 16.1 0.2 2.1 2 0 0 2 2 2 2 Prefoldin subunit Spc7 PF08317.6 gi|390938930|ref|YP_006402668.1| - 0.022 13.4 1.0 1.8 7.1 0.0 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein TBPIP PF07106.8 gi|390938930|ref|YP_006402668.1| - 0.053 13.0 1.3 0.91 9.0 0.2 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IFT57 PF10498.4 gi|390938930|ref|YP_006402668.1| - 0.057 12.1 0.2 0.13 10.9 0.0 1.6 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 APG17 PF04108.7 gi|390938930|ref|YP_006402668.1| - 0.11 11.2 0.8 0.4 9.4 0.1 1.8 1 1 0 2 2 2 0 Autophagy protein Apg17 Ribosomal_L18ae PF01775.12 gi|390938931|ref|YP_006402669.1| - 6e-11 42.3 0.6 9.2e-11 41.7 0.4 1.3 1 1 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|390938932|ref|YP_006402670.1| - 4e-55 186.0 0.5 4.7e-55 185.7 0.3 1.0 1 0 0 1 1 1 1 eIF-6 family DNA_pol3_beta PF00712.14 gi|390938932|ref|YP_006402670.1| - 0.092 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III beta subunit, N-terminal domain Ribosomal_L31e PF01198.14 gi|390938933|ref|YP_006402671.1| - 7.5e-21 73.5 1.5 9.3e-21 73.3 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|390938934|ref|YP_006402672.1| - 5.4e-17 60.9 7.4 6.2e-17 60.7 5.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.15 gi|390938935|ref|YP_006402673.1| - 1.7e-26 92.3 11.0 2.7e-26 91.6 7.6 1.3 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.6 gi|390938935|ref|YP_006402673.1| - 0.0006 18.9 5.5 0.00071 18.6 3.8 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 ClpB_D2-small PF10431.4 gi|390938935|ref|YP_006402673.1| - 0.028 14.3 4.1 1 9.2 0.8 2.2 2 0 0 2 2 2 0 C-terminal, D2-small domain, of ClpB protein SDA1 PF05285.7 gi|390938935|ref|YP_006402673.1| - 0.052 12.8 1.4 0.054 12.7 1.0 1.1 1 0 0 1 1 1 0 SDA1 DUF2857 PF11198.3 gi|390938935|ref|YP_006402673.1| - 0.18 11.2 6.8 1.9 7.9 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2857) Ribosomal_S19e PF01090.14 gi|390938936|ref|YP_006402674.1| - 3.6e-52 175.4 0.0 4.1e-52 175.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.5 gi|390938936|ref|YP_006402674.1| - 2.8e-05 23.7 1.0 0.00043 19.9 0.7 2.3 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|390938936|ref|YP_006402674.1| - 0.0028 17.4 0.4 0.037 13.8 0.1 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain RuvB_C PF05491.8 gi|390938936|ref|YP_006402674.1| - 0.013 15.0 0.2 0.092 12.3 0.1 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus HTH_IclR PF09339.5 gi|390938936|ref|YP_006402674.1| - 0.023 14.3 0.0 1.1 8.8 0.0 2.6 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|390938936|ref|YP_006402674.1| - 0.039 13.7 0.0 0.086 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|390938936|ref|YP_006402674.1| - 0.099 12.3 0.3 1.2 8.8 0.1 2.4 3 0 0 3 3 3 0 MarR family CRS1_YhbY PF01985.16 gi|390938937|ref|YP_006402675.1| - 5.6e-15 55.1 0.4 6.8e-15 54.8 0.3 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.11 gi|390938938|ref|YP_006402676.1| - 2.9e-19 68.7 0.0 3.6e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Fis1_TPR_C PF14853.1 gi|390938938|ref|YP_006402676.1| - 0.13 12.2 0.2 0.13 12.2 0.2 1.6 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat EMG1 PF03587.9 gi|390938939|ref|YP_006402677.1| - 9.1e-54 181.8 0.0 1e-53 181.6 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase NRDD PF13597.1 gi|390938940|ref|YP_006402678.1| - 6.8e-168 559.1 0.0 1.6e-90 303.7 0.0 2.0 2 0 0 2 2 2 2 Anaerobic ribonucleoside-triphosphate reductase PT-HINT PF07591.6 gi|390938940|ref|YP_006402678.1| - 0.0052 16.6 0.0 0.041 13.7 0.0 2.2 1 1 0 2 2 2 1 Pretoxin HINT domain zf-ribbon_3 PF13248.1 gi|390938940|ref|YP_006402678.1| - 0.0068 15.5 3.2 0.015 14.4 2.2 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Intein_splicing PF14890.1 gi|390938940|ref|YP_006402678.1| - 0.0073 15.2 0.5 2.6 6.8 0.7 2.2 1 1 0 2 2 2 2 Intein splicing domain DZR PF12773.2 gi|390938940|ref|YP_006402678.1| - 0.048 13.4 0.5 0.092 12.5 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF3797 PF12677.2 gi|390938940|ref|YP_006402678.1| - 0.77 9.4 4.5 0.31 10.7 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_2 PF13240.1 gi|390938940|ref|YP_006402678.1| - 0.91 9.0 6.4 5.9 6.5 0.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Radical_SAM PF04055.16 gi|390938941|ref|YP_006402679.1| - 6.5e-19 68.7 0.0 1.2e-18 67.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|390938941|ref|YP_006402679.1| - 1.3e-09 38.0 0.0 2.8e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|390938941|ref|YP_006402679.1| - 1.6e-09 37.9 0.1 2.9e-09 37.1 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Thy1 PF02511.10 gi|390938942|ref|YP_006402680.1| - 4.7e-55 185.8 0.1 6.3e-55 185.4 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein ETC_C1_NDUFA5 PF04716.9 gi|390938942|ref|YP_006402680.1| - 0.047 13.2 0.1 1.1 8.8 0.0 2.5 2 0 0 2 2 2 0 ETC complex I subunit conserved region PDGLE PF13190.1 gi|390938945|ref|YP_006402683.1| - 0.015 14.9 1.1 1.8 8.3 0.4 2.3 2 0 0 2 2 2 0 PDGLE domain DUF2244 PF10003.4 gi|390938945|ref|YP_006402683.1| - 0.043 13.1 1.2 0.061 12.6 0.8 1.2 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Reticulon PF02453.12 gi|390938945|ref|YP_006402683.1| - 0.36 10.4 4.9 0.4 10.2 2.7 1.5 2 0 0 2 2 2 0 Reticulon DUF2393 PF09624.5 gi|390938945|ref|YP_006402683.1| - 0.43 10.0 5.9 0.61 9.6 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) BTP PF05232.7 gi|390938945|ref|YP_006402683.1| - 1.3 8.7 9.2 0.13 12.0 3.4 1.5 2 0 0 2 2 2 0 Bacterial Transmembrane Pair family SfsA PF03749.8 gi|390938946|ref|YP_006402684.1| - 5.9e-42 143.5 0.0 7e-42 143.3 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein NERD PF08378.6 gi|390938946|ref|YP_006402684.1| - 0.038 14.2 0.0 0.06 13.6 0.0 1.3 1 0 0 1 1 1 0 Nuclease-related domain ADH_N PF08240.7 gi|390938947|ref|YP_006402685.1| - 3.7e-34 116.7 0.7 6.8e-34 115.9 0.5 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|390938947|ref|YP_006402685.1| - 8.5e-07 28.5 0.0 1.9e-06 27.4 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|390938947|ref|YP_006402685.1| - 4.1e-05 24.4 0.1 7e-05 23.7 0.1 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|390938947|ref|YP_006402685.1| - 0.012 14.7 0.0 0.057 12.5 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|390938947|ref|YP_006402685.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2029 PF09594.5 gi|390938948|ref|YP_006402686.1| - 0.00061 19.3 19.7 0.00061 19.3 13.7 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF2029) CDC14 PF08045.6 gi|390938948|ref|YP_006402686.1| - 0.086 11.9 0.1 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Cell division control protein 14, SIN component dUTPase PF00692.14 gi|390938949|ref|YP_006402687.1| - 6.4e-15 54.7 0.0 1.1e-14 53.9 0.0 1.4 2 0 0 2 2 2 1 dUTPase DCD PF06559.6 gi|390938949|ref|YP_006402687.1| - 0.037 12.4 0.0 0.09 11.1 0.0 1.7 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) NTP_transferase PF00483.18 gi|390938950|ref|YP_006402688.1| - 2.5e-37 128.5 0.0 2.9e-37 128.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|390938950|ref|YP_006402688.1| - 2.3e-12 47.2 0.0 3.3e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|390938950|ref|YP_006402688.1| - 0.0054 16.2 0.0 0.0068 15.9 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Peptidase_M54 PF07998.6 gi|390938951|ref|YP_006402689.1| - 1.2e-32 113.2 0.2 1.3e-32 113.1 0.2 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|390938951|ref|YP_006402689.1| - 0.00012 21.8 0.0 0.00013 21.7 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.1 gi|390938951|ref|YP_006402689.1| - 0.0015 18.5 0.0 0.0017 18.4 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M43 PF05572.8 gi|390938951|ref|YP_006402689.1| - 0.0056 16.2 0.1 0.013 15.1 0.1 1.6 2 0 0 2 2 2 1 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.1 gi|390938951|ref|YP_006402689.1| - 0.0078 16.7 0.0 0.011 16.3 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|390938951|ref|YP_006402689.1| - 0.015 14.7 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|390938951|ref|YP_006402689.1| - 0.019 13.4 0.3 0.026 12.9 0.2 1.1 1 0 0 1 1 1 0 Putative peptidase family DUF3152 PF11350.3 gi|390938951|ref|YP_006402689.1| - 0.03 13.8 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3152) Peptidase_M66 PF10462.4 gi|390938951|ref|YP_006402689.1| - 0.035 12.9 0.0 0.047 12.5 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_5 PF13688.1 gi|390938951|ref|YP_006402689.1| - 0.06 13.2 0.0 0.074 12.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Archease PF01951.11 gi|390938952|ref|YP_006402690.1| - 5.5e-36 123.5 0.1 6.3e-36 123.3 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF2150 PF09920.4 gi|390938952|ref|YP_006402690.1| - 0.09 12.3 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2150) RuBisCO_large PF00016.15 gi|390938953|ref|YP_006402691.1| - 3.5e-74 249.4 0.0 4.5e-74 249.0 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|390938953|ref|YP_006402691.1| - 3.1e-32 110.9 0.0 1.2e-31 108.9 0.0 1.9 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF4113 PF13438.1 gi|390938953|ref|YP_006402691.1| - 0.055 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4113) DUF697 PF05128.7 gi|390938953|ref|YP_006402691.1| - 0.15 11.5 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF697) ABC_tran PF00005.22 gi|390938954|ref|YP_006402692.1| - 1.6e-29 102.9 0.0 1.9e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390938954|ref|YP_006402692.1| - 5.5e-09 36.3 0.0 6.4e-06 26.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|390938954|ref|YP_006402692.1| - 0.0016 18.3 0.0 0.0069 16.2 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|390938954|ref|YP_006402692.1| - 0.0019 17.4 0.0 0.0039 16.4 0.0 1.5 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|390938954|ref|YP_006402692.1| - 0.0028 17.9 0.1 0.0056 16.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|390938954|ref|YP_006402692.1| - 0.0053 16.9 0.1 0.026 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|390938954|ref|YP_006402692.1| - 0.0084 14.9 0.2 0.079 11.7 0.2 1.9 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.1 gi|390938954|ref|YP_006402692.1| - 0.0088 16.0 0.1 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|390938954|ref|YP_006402692.1| - 0.0093 16.7 1.3 0.014 16.2 0.8 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|390938954|ref|YP_006402692.1| - 0.012 15.3 0.8 0.018 14.7 0.0 1.7 2 0 0 2 2 2 0 Part of AAA domain IstB_IS21 PF01695.12 gi|390938954|ref|YP_006402692.1| - 0.012 14.9 0.0 0.41 10.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|390938954|ref|YP_006402692.1| - 0.016 14.8 0.1 0.016 14.8 0.1 1.6 2 1 0 2 2 2 0 Archaeal ATPase NACHT PF05729.7 gi|390938954|ref|YP_006402692.1| - 0.021 14.4 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF258 PF03193.11 gi|390938954|ref|YP_006402692.1| - 0.042 13.0 0.1 0.075 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|390938954|ref|YP_006402692.1| - 0.048 13.2 0.0 0.082 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|390938954|ref|YP_006402692.1| - 0.089 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|390938954|ref|YP_006402692.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|390938954|ref|YP_006402692.1| - 0.15 12.2 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase MFS_1 PF07690.11 gi|390938958|ref|YP_006402696.1| - 1.7e-51 175.0 48.1 2.9e-51 174.2 33.4 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|390938958|ref|YP_006402696.1| - 3.2e-12 45.7 34.6 1.3e-10 40.5 8.5 2.6 3 0 0 3 3 3 2 Sugar (and other) transporter OATP PF03137.15 gi|390938958|ref|YP_006402696.1| - 8e-06 24.1 1.3 8e-06 24.1 0.9 3.8 2 2 2 4 4 4 2 Organic Anion Transporter Polypeptide (OATP) family Aminotran_5 PF00266.14 gi|390938959|ref|YP_006402697.1| - 2.3e-34 118.7 0.0 3e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Peptidase_C15 PF01470.12 gi|390938960|ref|YP_006402698.1| - 7e-76 254.5 0.0 8.1e-76 254.3 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase UTRA PF07702.8 gi|390938960|ref|YP_006402698.1| - 0.007 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 UTRA domain DUF4380 PF14315.1 gi|390938961|ref|YP_006402699.1| - 9.6e-57 192.2 0.0 1.2e-56 191.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4380) Peptidase_S8 PF00082.17 gi|390938962|ref|YP_006402700.1| - 1.7e-59 201.2 12.4 2.1e-59 201.0 8.6 1.1 1 0 0 1 1 1 1 Subtilase family Glyco_hydro_80 PF13647.1 gi|390938962|ref|YP_006402700.1| - 0.0007 18.9 0.5 0.002 17.4 0.3 1.7 1 0 0 1 1 1 1 Glycosyl hydrolase family 80 of chitosanase A Amidohydro_3 PF07969.6 gi|390938962|ref|YP_006402700.1| - 0.06 12.5 0.1 0.079 12.1 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase family Mrr_N PF14338.1 gi|390938962|ref|YP_006402700.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Mrr N-terminal domain MTS PF05175.9 gi|390938963|ref|YP_006402701.1| - 5.6e-34 116.9 0.0 6.5e-34 116.7 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|390938963|ref|YP_006402701.1| - 1.7e-13 50.6 0.1 2.4e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|390938963|ref|YP_006402701.1| - 1.6e-12 47.1 0.0 1.6e-12 47.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|390938963|ref|YP_006402701.1| - 7.3e-12 45.1 0.0 1e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|390938963|ref|YP_006402701.1| - 4.5e-10 40.0 0.0 5.8e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|390938963|ref|YP_006402701.1| - 4.1e-07 29.8 0.0 4.8e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.4 gi|390938963|ref|YP_006402701.1| - 1e-05 25.0 0.1 1.4e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_12 PF08242.7 gi|390938963|ref|YP_006402701.1| - 1.4e-05 25.4 0.0 1.9e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|390938963|ref|YP_006402701.1| - 0.00024 21.5 0.0 0.00034 21.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|390938963|ref|YP_006402701.1| - 0.0013 18.3 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|390938963|ref|YP_006402701.1| - 0.0016 18.8 0.0 0.0021 18.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|390938963|ref|YP_006402701.1| - 0.0018 17.8 0.0 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.1 gi|390938963|ref|YP_006402701.1| - 0.014 15.1 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|390938963|ref|YP_006402701.1| - 0.053 12.5 0.0 0.065 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase GidB PF02527.10 gi|390938963|ref|YP_006402701.1| - 0.093 11.8 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G TRM PF02005.11 gi|390938963|ref|YP_006402701.1| - 0.12 11.3 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase KOW PF00467.24 gi|390938964|ref|YP_006402702.1| - 5.7e-05 22.6 0.5 0.00011 21.7 0.3 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.12 gi|390938964|ref|YP_006402702.1| - 5.9e-05 23.3 0.0 8.5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 Cytidylate_kin2 PF13189.1 gi|390938965|ref|YP_006402703.1| - 1.2e-17 64.3 0.1 3.7e-16 59.5 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|390938965|ref|YP_006402703.1| - 8.5e-14 51.9 0.3 1.4e-13 51.3 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|390938965|ref|YP_006402703.1| - 1.1e-13 52.1 0.1 2.1e-13 51.1 0.0 1.5 1 1 1 2 2 2 1 AAA domain ADK PF00406.17 gi|390938965|ref|YP_006402703.1| - 1.9e-07 31.0 0.0 6.2e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Adenylate kinase AAA_28 PF13521.1 gi|390938965|ref|YP_006402703.1| - 3.8e-05 23.7 0.0 0.00012 22.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|390938965|ref|YP_006402703.1| - 4.2e-05 23.7 0.0 9.8e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|390938965|ref|YP_006402703.1| - 0.00015 21.6 0.1 0.00049 19.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|390938965|ref|YP_006402703.1| - 0.00018 21.2 0.0 0.00031 20.4 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain SKI PF01202.17 gi|390938965|ref|YP_006402703.1| - 0.00023 21.0 0.1 0.00085 19.2 0.0 1.8 1 1 0 1 1 1 1 Shikimate kinase AAA_22 PF13401.1 gi|390938965|ref|YP_006402703.1| - 0.0013 18.8 0.0 0.0027 17.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain PRK PF00485.13 gi|390938965|ref|YP_006402703.1| - 0.014 15.0 0.2 0.65 9.5 0.1 2.2 1 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family RuvB_N PF05496.7 gi|390938965|ref|YP_006402703.1| - 0.017 14.2 0.0 0.14 11.1 0.0 2.1 1 1 1 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus KTI12 PF08433.5 gi|390938965|ref|YP_006402703.1| - 0.023 13.9 0.0 0.032 13.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|390938965|ref|YP_006402703.1| - 0.032 14.2 0.0 0.042 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|390938965|ref|YP_006402703.1| - 0.041 13.5 0.0 0.072 12.7 0.0 1.5 1 0 0 1 1 1 0 NTPase Mg_chelatase PF01078.16 gi|390938965|ref|YP_006402703.1| - 0.047 12.8 0.0 0.081 12.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|390938965|ref|YP_006402703.1| - 0.05 13.3 0.0 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|390938965|ref|YP_006402703.1| - 0.085 12.4 0.1 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|390938965|ref|YP_006402703.1| - 0.088 12.1 0.0 0.38 10.1 0.0 2.0 2 1 0 2 2 2 0 Thymidylate kinase SRP54 PF00448.17 gi|390938965|ref|YP_006402703.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|390938965|ref|YP_006402703.1| - 0.14 11.2 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Ribosomal_L34e PF01199.13 gi|390938966|ref|YP_006402704.1| - 1.5e-33 114.9 1.6 1.6e-33 114.7 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DUF4428 PF14471.1 gi|390938966|ref|YP_006402704.1| - 0.045 13.4 1.0 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Zn_ribbon_recom PF13408.1 gi|390938966|ref|YP_006402704.1| - 0.061 13.5 1.1 0.084 13.1 0.2 1.6 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-C4_ClpX PF06689.8 gi|390938966|ref|YP_006402704.1| - 0.086 12.3 0.1 0.53 9.8 0.0 2.0 2 0 0 2 2 2 0 ClpX C4-type zinc finger Gin PF10764.4 gi|390938966|ref|YP_006402704.1| - 0.12 12.0 0.3 6.6 6.5 0.0 2.2 2 0 0 2 2 2 0 Inhibitor of sigma-G Gin 7tm_6 PF02949.15 gi|390938967|ref|YP_006402705.1| - 5.7e-06 25.3 0.6 6.7e-06 25.1 0.4 1.1 1 0 0 1 1 1 1 7tm Odorant receptor DUF2189 PF09955.4 gi|390938967|ref|YP_006402705.1| - 0.035 14.0 0.9 0.057 13.3 0.0 1.7 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2189) Ctr PF04145.10 gi|390938967|ref|YP_006402705.1| - 0.085 12.9 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Ctr copper transporter family DUF3087 PF11286.3 gi|390938967|ref|YP_006402705.1| - 0.093 11.9 2.9 3.2 6.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) MARVEL PF01284.18 gi|390938967|ref|YP_006402705.1| - 0.1 12.3 1.2 0.11 12.3 0.2 1.7 2 1 0 2 2 2 0 Membrane-associating domain DUF1180 PF06679.7 gi|390938967|ref|YP_006402705.1| - 0.38 10.6 4.5 4.1 7.2 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1180) 7TM_GPCR_Srsx PF10320.4 gi|390938967|ref|YP_006402705.1| - 0.66 9.0 6.5 0.04 13.0 1.0 1.5 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srsx DUF454 PF04304.8 gi|390938967|ref|YP_006402705.1| - 5.9 6.9 11.3 1.1 9.3 0.2 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF454) SecY PF00344.15 gi|390938968|ref|YP_006402706.1| - 1.3e-83 280.8 23.1 1.8e-83 280.3 16.0 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|390938968|ref|YP_006402706.1| - 2.9e-10 39.4 2.7 4.2e-10 38.9 0.5 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|390938969|ref|YP_006402707.1| - 2.2e-30 105.6 1.0 2.8e-30 105.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|390938970|ref|YP_006402708.1| - 3.3e-14 52.1 0.0 6.2e-14 51.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.10 gi|390938971|ref|YP_006402709.1| - 1.3e-25 88.4 0.2 2.7e-25 87.4 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|390938971|ref|YP_006402709.1| - 8.7e-22 76.6 2.5 3.2e-21 74.8 0.7 2.2 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L18p PF00861.17 gi|390938972|ref|YP_006402710.1| - 1.4e-33 115.6 0.2 3.7e-33 114.2 0.1 1.6 2 0 0 2 2 2 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|390938972|ref|YP_006402710.1| - 1.3e-07 32.0 0.0 2.6e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region MgsA_C PF12002.3 gi|390938972|ref|YP_006402710.1| - 0.055 13.1 0.1 3.3 7.3 0.0 2.2 2 0 0 2 2 2 0 MgsA AAA+ ATPase C terminal Ribosomal_L19e PF01280.15 gi|390938973|ref|YP_006402711.1| - 3e-52 176.3 7.7 3.4e-52 176.1 5.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF4019 PF13211.1 gi|390938973|ref|YP_006402711.1| - 0.026 14.7 0.3 0.047 13.9 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) HTH_17 PF12728.2 gi|390938973|ref|YP_006402711.1| - 4.7 7.5 7.3 27 5.1 0.0 3.4 3 1 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|390938974|ref|YP_006402712.1| - 2e-32 111.4 0.0 2.5e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|390938975|ref|YP_006402713.1| - 2.3e-25 88.9 7.7 2.2e-16 60.0 0.6 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.14 gi|390938976|ref|YP_006402714.1| - 6.3e-26 90.7 0.0 8e-26 90.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|390938977|ref|YP_006402715.1| - 4.9e-17 61.0 2.4 5.1e-17 60.9 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_L37ae PF01780.14 gi|390938977|ref|YP_006402715.1| - 0.0091 15.8 0.3 0.01 15.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family zf-FPG_IleRS PF06827.9 gi|390938977|ref|YP_006402715.1| - 0.0098 15.5 2.0 0.016 14.7 1.4 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|390938977|ref|YP_006402715.1| - 0.011 15.5 2.3 0.013 15.2 1.6 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-P11 PF03854.9 gi|390938977|ref|YP_006402715.1| - 0.046 13.2 0.2 0.063 12.7 0.1 1.2 1 0 0 1 1 1 0 P-11 zinc finger DUF2039 PF10217.4 gi|390938977|ref|YP_006402715.1| - 0.096 12.7 1.1 0.11 12.5 0.8 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) DUF1451 PF07295.6 gi|390938977|ref|YP_006402715.1| - 0.1 12.3 0.1 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) A2L_zn_ribbon PF08792.5 gi|390938977|ref|YP_006402715.1| - 0.16 11.4 0.7 0.25 10.8 0.5 1.2 1 0 0 1 1 1 0 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|390938977|ref|YP_006402715.1| - 0.18 11.8 3.6 0.67 10.0 0.3 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-AD PF07776.10 gi|390938977|ref|YP_006402715.1| - 1.2 9.2 3.5 2.7 8.0 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) Ribosomal_L40e PF01020.12 gi|390938977|ref|YP_006402715.1| - 4 7.0 5.7 2.2 7.9 0.4 2.2 1 1 1 2 2 2 0 Ribosomal L40e family Ribosomal_L5_C PF00673.16 gi|390938978|ref|YP_006402716.1| - 1.9e-21 75.5 0.0 3.6e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|390938978|ref|YP_006402716.1| - 1.2e-15 56.9 0.2 2.5e-15 56.0 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 UPF0147 PF03685.8 gi|390938978|ref|YP_006402716.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0147) NAC PF01849.13 gi|390938978|ref|YP_006402716.1| - 0.12 11.9 0.2 0.29 10.6 0.1 1.7 1 0 0 1 1 1 0 NAC domain Ribosomal_S4e PF00900.15 gi|390938979|ref|YP_006402717.1| - 8.4e-28 95.8 0.2 1.4e-27 95.1 0.1 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|390938979|ref|YP_006402717.1| - 1.5e-16 59.8 3.9 2.8e-16 59.0 2.7 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|390938979|ref|YP_006402717.1| - 3.6e-11 42.3 0.2 1.4e-10 40.4 0.0 2.1 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|390938979|ref|YP_006402717.1| - 0.0073 15.9 0.8 0.017 14.7 0.5 1.7 1 0 0 1 1 1 1 KOW motif S4_2 PF13275.1 gi|390938979|ref|YP_006402717.1| - 0.037 13.6 0.3 0.099 12.2 0.0 1.8 2 0 0 2 2 2 0 S4 domain 3HCDH PF00725.17 gi|390938979|ref|YP_006402717.1| - 0.054 13.8 0.0 0.089 13.2 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KOW PF00467.24 gi|390938980|ref|YP_006402718.1| - 1.1e-10 40.7 2.3 1.1e-10 40.7 1.6 1.6 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.14 gi|390938981|ref|YP_006402719.1| - 2.7e-37 127.2 0.0 3.1e-37 127.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|390938982|ref|YP_006402720.1| - 1.8e-25 88.7 3.8 2.3e-25 88.4 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 zf-C3H1 PF10650.4 gi|390938982|ref|YP_006402720.1| - 0.12 11.8 0.6 0.21 11.1 0.4 1.3 1 0 0 1 1 1 0 Putative zinc-finger domain TCTP PF00838.12 gi|390938982|ref|YP_006402720.1| - 0.19 11.7 0.6 0.25 11.3 0.4 1.1 1 0 0 1 1 1 0 Translationally controlled tumour protein UPF0086 PF01868.11 gi|390938983|ref|YP_006402721.1| - 1.5e-27 95.0 0.0 1.6e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|390938984|ref|YP_006402722.1| - 5.4e-21 74.0 5.2 6.3e-21 73.8 3.6 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.15 gi|390938985|ref|YP_006402723.1| - 2e-17 63.2 0.2 8e-17 61.2 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|390938985|ref|YP_006402723.1| - 9.9e-13 47.4 0.0 1.9e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|390938985|ref|YP_006402723.1| - 8e-06 25.4 1.4 8.4e-05 22.1 0.3 2.6 2 1 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|390938985|ref|YP_006402723.1| - 0.00063 19.3 0.0 0.0015 18.1 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|390938985|ref|YP_006402723.1| - 0.072 12.7 3.1 0.15 11.7 0.5 2.4 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|390938986|ref|YP_006402724.1| - 3.2e-34 117.0 0.3 3.9e-34 116.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|390938987|ref|YP_006402725.1| - 2.8e-32 110.1 0.3 3.7e-32 109.7 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.12 gi|390938987|ref|YP_006402725.1| - 0.0012 19.1 0.8 0.0021 18.3 0.5 1.3 1 0 0 1 1 1 1 bZIP Maf transcription factor VWA_CoxE PF05762.9 gi|390938988|ref|YP_006402726.1| - 4.9e-17 61.8 0.1 8e-17 61.1 0.1 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|390938988|ref|YP_006402726.1| - 6.1e-07 29.7 0.0 1.7e-06 28.2 0.0 1.7 1 1 0 1 1 1 1 von Willebrand factor type A domain PALP PF00291.20 gi|390938988|ref|YP_006402726.1| - 0.077 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Tax PF02959.11 gi|390938988|ref|YP_006402726.1| - 0.083 12.3 0.0 0.3 10.5 0.0 1.8 2 0 0 2 2 2 0 HTLV Tax VWA PF00092.23 gi|390938988|ref|YP_006402726.1| - 0.12 12.0 0.0 0.31 10.7 0.0 1.6 1 1 0 1 1 1 0 von Willebrand factor type A domain AAA_5 PF07728.9 gi|390938989|ref|YP_006402727.1| - 3.5e-16 59.1 0.0 5.5e-16 58.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|390938989|ref|YP_006402727.1| - 0.00025 20.6 0.0 0.0022 17.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|390938989|ref|YP_006402727.1| - 0.0051 17.0 0.0 0.024 14.8 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|390938989|ref|YP_006402727.1| - 0.01 15.3 0.0 3.3 7.1 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.1 gi|390938989|ref|YP_006402727.1| - 0.015 15.0 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|390938989|ref|YP_006402727.1| - 0.061 13.6 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|390938989|ref|YP_006402727.1| - 0.088 12.3 0.0 0.24 10.9 0.0 1.7 1 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|390938989|ref|YP_006402727.1| - 0.12 12.5 0.0 10 6.2 0.0 2.6 3 0 0 3 3 3 0 AAA domain Mg_chelatase PF01078.16 gi|390938989|ref|YP_006402727.1| - 0.17 11.0 0.0 3.7 6.6 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Ribosomal_L2_C PF03947.13 gi|390938990|ref|YP_006402728.1| - 7.4e-39 132.5 1.7 1.1e-38 132.0 1.2 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|390938990|ref|YP_006402728.1| - 1.6e-10 40.8 0.0 3.7e-10 39.6 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|390938991|ref|YP_006402729.1| - 8.1e-20 70.5 0.9 1.1e-19 70.1 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L23 Pox_polyA_pol_N PF12630.2 gi|390938991|ref|YP_006402729.1| - 0.03 14.3 0.1 0.039 14.0 0.1 1.2 1 0 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain ASL_C PF08328.6 gi|390938991|ref|YP_006402729.1| - 0.052 13.3 0.1 0.059 13.2 0.1 1.1 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal Ribosomal_L4 PF00573.17 gi|390938992|ref|YP_006402730.1| - 3.7e-35 121.0 0.0 4.3e-35 120.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|390938993|ref|YP_006402731.1| - 1.1e-52 179.0 0.0 2.4e-52 177.9 0.0 1.5 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|390938994|ref|YP_006402732.1| - 6.8e-28 97.8 0.0 2.8e-27 95.8 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methyltransferase YpjP PF14005.1 gi|390938994|ref|YP_006402732.1| - 0.091 12.5 0.3 0.26 11.0 0.1 1.7 2 0 0 2 2 2 0 YpjP-like protein PAPS_reduct PF01507.14 gi|390938995|ref|YP_006402733.1| - 2.4e-44 151.2 0.0 4.5e-44 150.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|390938995|ref|YP_006402733.1| - 0.029 13.7 0.0 0.57 9.5 0.0 2.3 2 0 0 2 2 2 0 ATP-binding region QueC PF06508.8 gi|390938995|ref|YP_006402733.1| - 0.17 11.1 0.4 0.9 8.7 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DEAD PF00270.24 gi|390938996|ref|YP_006402734.1| - 2.3e-32 111.8 0.0 1.4e-28 99.4 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|390938996|ref|YP_006402734.1| - 7.2e-18 64.2 0.0 1.1e-16 60.4 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.6 gi|390938996|ref|YP_006402734.1| - 1.3e-12 47.8 0.0 3.1e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated ResIII PF04851.10 gi|390938996|ref|YP_006402734.1| - 6.5e-05 22.8 0.0 0.00016 21.5 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.16 gi|390938996|ref|YP_006402734.1| - 0.0029 16.9 0.0 0.01 15.1 0.0 1.8 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_22 PF13401.1 gi|390938996|ref|YP_006402734.1| - 0.1 12.7 0.2 2.1 8.5 0.0 3.1 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|390938996|ref|YP_006402734.1| - 0.15 11.7 0.3 0.79 9.5 0.0 2.4 3 0 0 3 3 3 0 Part of AAA domain T4SS-DNA_transf PF02534.9 gi|390938996|ref|YP_006402734.1| - 0.22 10.0 0.0 0.39 9.2 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer zf-HIT PF04438.11 gi|390938996|ref|YP_006402734.1| - 0.56 9.8 1.6 0.55 9.9 0.1 1.7 2 0 0 2 2 2 0 HIT zinc finger RR_TM4-6 PF06459.7 gi|390938997|ref|YP_006402735.1| - 1.6 8.5 12.9 1.9 8.3 8.9 1.0 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 RNase_H2-Ydr279 PF09468.5 gi|390938997|ref|YP_006402735.1| - 2.6 7.1 12.0 2.8 7.0 8.3 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) PCNA_N PF00705.13 gi|390939000|ref|YP_006402738.1| - 5.5e-12 45.3 0.2 1.5e-11 43.9 0.1 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|390939000|ref|YP_006402738.1| - 1.1e-08 35.0 0.5 3.3e-06 27.0 0.1 3.4 2 2 1 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.7 gi|390939000|ref|YP_006402738.1| - 0.0016 17.4 0.0 0.0041 16.1 0.0 1.6 1 1 0 1 1 1 1 Hus1-like protein DRTGG PF07085.7 gi|390939000|ref|YP_006402738.1| - 0.018 14.6 0.0 0.034 13.7 0.0 1.5 1 0 0 1 1 1 0 DRTGG domain Pox_TAP PF03355.9 gi|390939000|ref|YP_006402738.1| - 0.021 14.1 0.1 0.94 8.7 0.0 2.2 2 0 0 2 2 2 0 Viral Trans-Activator Protein POR PF01558.13 gi|390939001|ref|YP_006402739.1| - 3.9e-41 140.8 0.5 4.5e-41 140.6 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|390939002|ref|YP_006402740.1| - 9.7e-18 62.9 16.3 6e-10 38.3 4.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|390939002|ref|YP_006402740.1| - 7.6e-13 48.0 21.9 6.4e-09 35.4 8.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|390939002|ref|YP_006402740.1| - 1.3e-11 44.1 10.9 1.6e-11 43.8 7.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|390939002|ref|YP_006402740.1| - 1.5e-11 43.6 17.3 1.9e-06 27.5 3.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|390939002|ref|YP_006402740.1| - 2e-11 44.0 11.5 2.8e-11 43.6 8.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|390939002|ref|YP_006402740.1| - 6.4e-10 38.3 14.8 7.6e-05 22.4 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|390939002|ref|YP_006402740.1| - 1.8e-09 37.6 13.4 2.6e-09 37.2 9.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|390939002|ref|YP_006402740.1| - 1e-08 35.8 9.2 1.7e-05 25.4 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|390939002|ref|YP_006402740.1| - 1.3e-08 34.7 4.8 0.00076 19.4 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|390939002|ref|YP_006402740.1| - 3e-07 30.2 15.9 0.0016 18.6 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|390939002|ref|YP_006402740.1| - 3.6e-06 27.2 9.0 0.0074 16.6 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|390939002|ref|YP_006402740.1| - 3.4e-05 24.0 7.6 0.036 14.4 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|390939002|ref|YP_006402740.1| - 0.00029 21.1 19.3 0.039 14.5 5.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|390939002|ref|YP_006402740.1| - 0.0015 19.0 16.0 0.06 13.9 3.4 3.0 2 2 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|390939002|ref|YP_006402740.1| - 0.0038 17.5 10.9 0.27 11.6 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|390939002|ref|YP_006402740.1| - 0.0062 16.3 6.7 0.026 14.3 4.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain POR_N PF01855.14 gi|390939003|ref|YP_006402741.1| - 1.8e-68 230.4 0.3 2.3e-68 230.1 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|390939003|ref|YP_006402741.1| - 0.00068 19.5 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|390939003|ref|YP_006402741.1| - 0.01 15.3 0.1 0.018 14.5 0.1 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|390939004|ref|YP_006402742.1| - 2.2e-24 85.7 0.2 3.3e-24 85.2 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|390939004|ref|YP_006402742.1| - 0.0058 15.5 0.1 0.0082 15.0 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Sec61_beta PF03911.11 gi|390939005|ref|YP_006402743.1| - 1.9e-11 43.5 0.9 2.2e-11 43.3 0.7 1.1 1 0 0 1 1 1 1 Sec61beta family MazG PF03819.12 gi|390939006|ref|YP_006402744.1| - 1.9e-13 50.1 0.6 2.3e-13 49.8 0.4 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|390939006|ref|YP_006402744.1| - 0.0058 16.8 0.4 0.0063 16.7 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase PG_binding_1 PF01471.13 gi|390939006|ref|YP_006402744.1| - 0.096 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain PcrB PF01884.12 gi|390939007|ref|YP_006402745.1| - 4.1e-58 196.3 0.1 4.8e-58 196.1 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|390939007|ref|YP_006402745.1| - 2.9e-05 23.4 0.0 4.5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|390939007|ref|YP_006402745.1| - 0.0034 16.4 0.1 0.0049 15.8 0.1 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Ribul_P_3_epim PF00834.14 gi|390939007|ref|YP_006402745.1| - 0.0063 15.6 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family Trp_syntA PF00290.15 gi|390939007|ref|YP_006402745.1| - 0.032 12.7 0.1 0.084 11.3 0.0 1.6 2 0 0 2 2 2 0 Tryptophan synthase alpha chain MTD PF01993.13 gi|390939007|ref|YP_006402745.1| - 0.034 13.1 0.1 1 8.3 0.0 2.6 2 1 1 3 3 3 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase IMPDH PF00478.20 gi|390939007|ref|YP_006402745.1| - 0.058 12.2 0.1 0.1 11.4 0.0 1.4 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Elf1 PF05129.8 gi|390939008|ref|YP_006402746.1| - 1.4e-18 66.3 0.2 1.8e-18 66.0 0.2 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|390939008|ref|YP_006402746.1| - 6.5e-05 22.1 0.7 0.00021 20.5 0.5 1.9 1 1 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|390939008|ref|YP_006402746.1| - 0.00011 22.4 0.1 0.00018 21.7 0.1 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar GATA PF00320.22 gi|390939008|ref|YP_006402746.1| - 0.00073 18.8 0.7 0.0011 18.2 0.5 1.3 1 0 0 1 1 1 1 GATA zinc finger Ribosomal_L32p PF01783.18 gi|390939008|ref|YP_006402746.1| - 0.005 16.9 3.4 0.012 15.7 0.4 2.1 2 0 0 2 2 2 1 Ribosomal L32p protein family TFIIS_C PF01096.13 gi|390939008|ref|YP_006402746.1| - 0.0092 15.5 0.5 0.015 14.9 0.3 1.3 1 0 0 1 1 1 1 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|390939008|ref|YP_006402746.1| - 0.011 14.9 0.9 0.16 11.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain FdhE PF04216.7 gi|390939008|ref|YP_006402746.1| - 0.014 15.1 0.3 0.018 14.7 0.2 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-ISL3 PF14690.1 gi|390939008|ref|YP_006402746.1| - 0.016 15.2 0.1 0.38 10.8 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PolC_DP2 PF03833.8 gi|390939008|ref|YP_006402746.1| - 0.09 10.4 0.0 0.092 10.4 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn_Tnp_IS1595 PF12760.2 gi|390939008|ref|YP_006402746.1| - 0.12 12.2 2.2 0.4 10.5 1.4 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|390939008|ref|YP_006402746.1| - 0.13 11.7 3.9 1.9 8.0 2.7 2.4 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|390939008|ref|YP_006402746.1| - 0.14 11.7 1.1 7.9 6.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|390939008|ref|YP_006402746.1| - 0.14 12.2 4.6 0.14 12.2 0.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_4 PF13717.1 gi|390939008|ref|YP_006402746.1| - 0.15 11.7 1.0 8.8 6.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|390939008|ref|YP_006402746.1| - 0.26 10.7 1.5 7.7 6.0 0.0 2.3 2 0 0 2 2 2 0 HypF finger Ogr_Delta PF04606.7 gi|390939008|ref|YP_006402746.1| - 0.3 10.7 1.8 0.51 10.0 1.2 1.4 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger zf-Mss51 PF13824.1 gi|390939008|ref|YP_006402746.1| - 0.34 10.8 2.5 3.3 7.6 0.1 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 UPF0547 PF10571.4 gi|390939008|ref|YP_006402746.1| - 2.8 7.6 5.2 21 4.8 3.6 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 SWIM PF04434.12 gi|390939009|ref|YP_006402747.1| - 0.00054 19.3 0.1 0.0011 18.4 0.1 1.5 1 1 0 1 1 1 1 SWIM zinc finger Arch_ATPase PF01637.13 gi|390939011|ref|YP_006402749.1| - 6.3e-17 62.0 0.2 8.1e-17 61.6 0.2 1.1 1 0 0 1 1 1 1 Archaeal ATPase DUF1345 PF07077.6 gi|390939012|ref|YP_006402750.1| - 0.15 11.5 0.9 0.44 10.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1345) SdpI PF13630.1 gi|390939012|ref|YP_006402750.1| - 0.43 10.3 11.3 0.29 10.8 2.2 2.3 1 1 1 2 2 2 0 SdpI/YhfL protein family DUF1282 PF06930.7 gi|390939012|ref|YP_006402750.1| - 2.5 7.7 10.5 4.7 6.8 7.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) TrbC PF04956.8 gi|390939012|ref|YP_006402750.1| - 3.4 7.7 7.9 3.1 7.8 1.1 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family MENTAL PF10457.4 gi|390939014|ref|YP_006402752.1| - 2.3 7.7 10.3 0.071 12.7 2.5 1.8 2 0 0 2 2 2 0 Cholesterol-capturing domain ABC_tran PF00005.22 gi|390939015|ref|YP_006402753.1| - 1.1e-18 67.8 0.0 1.7e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|390939015|ref|YP_006402753.1| - 6e-07 29.7 0.0 0.0022 18.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|390939015|ref|YP_006402753.1| - 7.2e-05 22.2 0.3 0.00014 21.2 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|390939015|ref|YP_006402753.1| - 0.0003 20.4 0.1 0.001 18.7 0.1 2.0 1 1 0 1 1 1 1 NACHT domain DUF258 PF03193.11 gi|390939015|ref|YP_006402753.1| - 0.00034 19.8 0.0 0.00059 19.0 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|390939015|ref|YP_006402753.1| - 0.00037 21.2 0.0 0.038 14.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|390939015|ref|YP_006402753.1| - 0.00086 18.2 0.2 0.16 10.7 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.1 gi|390939015|ref|YP_006402753.1| - 0.0016 18.4 0.0 0.0023 17.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|390939015|ref|YP_006402753.1| - 0.002 18.0 0.2 0.031 14.1 0.2 2.5 2 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|390939015|ref|YP_006402753.1| - 0.0029 17.5 0.0 0.0058 16.5 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|390939015|ref|YP_006402753.1| - 0.0046 16.6 0.1 0.44 10.3 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain SMC_N PF02463.14 gi|390939015|ref|YP_006402753.1| - 0.0047 16.1 0.0 0.16 11.1 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TMEM206 PF15122.1 gi|390939015|ref|YP_006402753.1| - 0.0084 15.0 0.0 0.028 13.3 0.0 1.7 1 1 1 2 2 2 1 TMEM206 protein family AAA_33 PF13671.1 gi|390939015|ref|YP_006402753.1| - 0.0096 15.7 0.1 0.08 12.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|390939015|ref|YP_006402753.1| - 0.015 14.6 0.0 0.029 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|390939015|ref|YP_006402753.1| - 0.017 14.2 0.1 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|390939015|ref|YP_006402753.1| - 0.017 15.2 0.0 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.12 gi|390939015|ref|YP_006402753.1| - 0.019 14.3 0.2 5.2 6.4 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.24 gi|390939015|ref|YP_006402753.1| - 0.028 14.6 0.1 0.046 13.9 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|390939015|ref|YP_006402753.1| - 0.03 14.4 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|390939015|ref|YP_006402753.1| - 0.034 13.8 0.4 0.096 12.3 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|390939015|ref|YP_006402753.1| - 0.035 14.4 0.0 0.073 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|390939015|ref|YP_006402753.1| - 0.038 14.2 0.2 0.057 13.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|390939015|ref|YP_006402753.1| - 0.057 13.1 0.1 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|390939015|ref|YP_006402753.1| - 0.076 12.5 0.0 0.2 11.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|390939015|ref|YP_006402753.1| - 0.087 12.2 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 MutS domain V VirE PF05272.6 gi|390939015|ref|YP_006402753.1| - 0.09 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Virulence-associated protein E Arch_ATPase PF01637.13 gi|390939015|ref|YP_006402753.1| - 0.094 12.4 0.0 0.14 11.8 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase SRP54 PF00448.17 gi|390939015|ref|YP_006402753.1| - 0.1 12.0 0.2 0.23 10.8 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|390939015|ref|YP_006402753.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 NTPase Zip PF02535.17 gi|390939016|ref|YP_006402754.1| - 0.0073 15.3 0.1 0.011 14.7 0.1 1.3 1 1 0 1 1 1 1 ZIP Zinc transporter E1-E2_ATPase PF00122.15 gi|390939016|ref|YP_006402754.1| - 0.046 12.7 0.2 0.058 12.4 0.2 1.1 1 0 0 1 1 1 0 E1-E2 ATPase Pex2_Pex12 PF04757.9 gi|390939016|ref|YP_006402754.1| - 0.076 12.4 0.0 0.091 12.1 0.0 1.2 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region RtcB PF01139.12 gi|390939017|ref|YP_006402755.1| - 5.4e-149 496.7 0.0 6e-149 496.5 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB tRNA-synt_His PF13393.1 gi|390939018|ref|YP_006402756.1| - 5.2e-52 176.8 0.1 6.4e-52 176.5 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|390939018|ref|YP_006402756.1| - 1.6e-22 79.9 0.3 2.5e-22 79.2 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|390939018|ref|YP_006402756.1| - 4.5e-06 26.5 0.0 1.2e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|390939018|ref|YP_006402756.1| - 0.0013 18.0 0.0 0.0032 16.6 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|390939018|ref|YP_006402756.1| - 0.0042 15.9 0.1 0.14 10.8 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA_int_endo PF01974.12 gi|390939019|ref|YP_006402757.1| - 1.6e-08 34.1 0.1 3.5e-08 33.1 0.1 1.6 1 1 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|390939019|ref|YP_006402757.1| - 0.00011 21.6 0.0 0.00024 20.5 0.0 1.6 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.5 gi|390939019|ref|YP_006402757.1| - 0.023 14.9 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 Sen15 protein IF-2B PF01008.12 gi|390939020|ref|YP_006402758.1| - 6.6e-81 271.3 0.1 7.8e-81 271.1 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Arc_PepC_II PF06847.6 gi|390939021|ref|YP_006402759.1| - 8.9e-16 58.1 0.1 2.1e-15 56.9 0.0 1.7 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|390939021|ref|YP_006402759.1| - 9.6e-09 35.3 5.6 9.6e-09 35.3 3.9 1.7 2 0 0 2 2 2 1 Type IV leader peptidase family C9orf72-like PF15019.1 gi|390939021|ref|YP_006402759.1| - 0.038 13.2 0.0 0.058 12.6 0.0 1.3 1 0 0 1 1 1 0 C9orf72-like protein family CcmD PF04995.9 gi|390939021|ref|YP_006402759.1| - 0.34 10.6 2.2 10 5.9 0.5 3.1 3 0 0 3 3 3 0 Heme exporter protein D (CcmD) Rad51 PF08423.6 gi|390939022|ref|YP_006402760.1| - 4.5e-97 323.9 0.0 6.2e-97 323.5 0.0 1.2 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|390939022|ref|YP_006402760.1| - 2.6e-17 62.8 0.0 3.4e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|390939022|ref|YP_006402760.1| - 2.2e-16 59.8 0.1 7.1e-15 54.9 0.0 2.3 3 0 0 3 3 3 1 AAA domain KaiC PF06745.8 gi|390939022|ref|YP_006402760.1| - 1.7e-11 43.6 0.0 2.9e-11 42.9 0.0 1.4 1 0 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|390939022|ref|YP_006402760.1| - 2.7e-07 30.6 0.8 1.3e-06 28.4 0.1 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|390939022|ref|YP_006402760.1| - 0.0014 18.5 0.0 0.0041 17.0 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif AAA_22 PF13401.1 gi|390939022|ref|YP_006402760.1| - 0.0029 17.7 0.0 0.0058 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|390939022|ref|YP_006402760.1| - 0.0072 16.6 0.0 0.018 15.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|390939022|ref|YP_006402760.1| - 0.017 14.7 0.0 0.081 12.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain Cytidylate_kin2 PF13189.1 gi|390939022|ref|YP_006402760.1| - 0.021 14.7 0.0 6.5 6.6 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family Sigma70_r3 PF04539.11 gi|390939022|ref|YP_006402760.1| - 0.025 14.4 0.5 0.94 9.4 0.1 2.8 3 0 0 3 3 3 0 Sigma-70 region 3 HTH_3 PF01381.17 gi|390939022|ref|YP_006402760.1| - 0.03 14.1 0.1 6.1 6.7 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix AAA_17 PF13207.1 gi|390939022|ref|YP_006402760.1| - 0.035 14.9 0.0 3.3 8.5 0.0 2.9 2 1 1 3 3 3 0 AAA domain HTH_31 PF13560.1 gi|390939022|ref|YP_006402760.1| - 0.036 14.2 0.3 1.4 9.2 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain ABC_tran PF00005.22 gi|390939022|ref|YP_006402760.1| - 0.041 14.1 0.0 0.1 12.8 0.0 1.7 2 0 0 2 2 2 0 ABC transporter DUF2448 PF10476.4 gi|390939022|ref|YP_006402760.1| - 0.043 13.3 0.0 0.072 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2448) TPP_enzyme_M PF00205.17 gi|390939022|ref|YP_006402760.1| - 0.081 12.6 0.1 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain tRNA-Thr_ED PF08915.6 gi|390939023|ref|YP_006402761.1| - 3.7e-47 159.7 0.0 7.5e-47 158.7 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|390939023|ref|YP_006402761.1| - 1.9e-27 95.0 0.6 4.4e-27 93.8 0.4 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|390939023|ref|YP_006402761.1| - 1e-13 51.2 0.3 2e-13 50.2 0.2 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) NOB1_Zn_bind PF08772.6 gi|390939024|ref|YP_006402762.1| - 0.00036 20.3 1.2 0.00089 19.0 0.9 1.6 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like Ogr_Delta PF04606.7 gi|390939024|ref|YP_006402762.1| - 0.00051 19.6 0.5 0.00083 18.9 0.4 1.3 1 1 0 1 1 1 1 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.1 gi|390939024|ref|YP_006402762.1| - 0.00089 18.3 1.1 0.017 14.3 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|390939024|ref|YP_006402762.1| - 0.0062 16.3 2.5 0.01 15.6 1.7 1.5 1 1 0 1 1 1 1 LITAF-like zinc ribbon domain Nudix_N_2 PF14803.1 gi|390939024|ref|YP_006402762.1| - 0.012 15.3 0.9 0.4 10.4 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal HypA PF01155.14 gi|390939024|ref|YP_006402762.1| - 0.012 15.2 0.1 0.015 15.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|390939024|ref|YP_006402762.1| - 0.013 15.4 0.6 0.37 10.8 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|390939024|ref|YP_006402762.1| - 0.016 15.0 1.0 0.03 14.1 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|390939024|ref|YP_006402762.1| - 0.025 14.2 3.4 2.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Sgf11 PF08209.6 gi|390939024|ref|YP_006402762.1| - 0.049 12.9 0.4 0.049 12.9 0.3 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Elf1 PF05129.8 gi|390939024|ref|YP_006402762.1| - 0.052 13.2 0.1 0.067 12.8 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF3797 PF12677.2 gi|390939024|ref|YP_006402762.1| - 0.062 12.9 0.7 0.062 12.9 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF35_N PF12172.3 gi|390939024|ref|YP_006402762.1| - 0.095 12.6 1.3 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.2 gi|390939024|ref|YP_006402762.1| - 0.12 12.3 0.6 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Terminase_GpA PF05876.7 gi|390939024|ref|YP_006402762.1| - 0.15 10.3 1.3 0.16 10.2 0.9 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-NADH-PPase PF09297.6 gi|390939024|ref|YP_006402762.1| - 0.21 11.1 2.6 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|390939024|ref|YP_006402762.1| - 0.21 11.0 2.3 1.5 8.3 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|390939024|ref|YP_006402762.1| - 0.23 11.4 3.1 1.5 8.8 2.1 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|390939024|ref|YP_006402762.1| - 0.24 11.7 1.2 5.5 7.3 0.9 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2_6 PF13912.1 gi|390939024|ref|YP_006402762.1| - 0.32 10.9 3.9 6.9 6.7 0.3 2.4 2 1 0 2 2 2 0 C2H2-type zinc finger TFIIS_C PF01096.13 gi|390939024|ref|YP_006402762.1| - 0.44 10.2 4.6 7.7 6.2 0.7 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L33 PF00471.15 gi|390939024|ref|YP_006402762.1| - 0.58 10.4 3.2 2.6 8.3 1.0 2.1 2 0 0 2 2 2 0 Ribosomal protein L33 zf-H2C2_2 PF13465.1 gi|390939024|ref|YP_006402762.1| - 0.63 10.4 3.7 1 9.8 0.7 2.1 2 0 0 2 2 2 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.7 gi|390939024|ref|YP_006402762.1| - 0.7 9.2 5.5 1.2 8.5 0.5 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|390939024|ref|YP_006402762.1| - 0.74 9.3 8.8 10 5.7 6.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|390939024|ref|YP_006402762.1| - 0.83 9.4 5.0 0.62 9.9 0.3 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e DUF4379 PF14311.1 gi|390939024|ref|YP_006402762.1| - 1.3 8.8 5.2 3.4 7.5 3.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) PhnA_Zn_Ribbon PF08274.7 gi|390939024|ref|YP_006402762.1| - 1.6 8.6 4.5 11 5.9 0.5 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.1 gi|390939024|ref|YP_006402762.1| - 1.6 8.3 3.7 15 5.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.22 gi|390939024|ref|YP_006402762.1| - 2.1 7.7 5.1 1.2 8.5 0.1 2.1 2 0 0 2 2 2 0 GATA zinc finger DUF1610 PF07754.6 gi|390939024|ref|YP_006402762.1| - 2.2 8.4 7.9 0.48 10.5 1.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-C2H2 PF00096.21 gi|390939024|ref|YP_006402762.1| - 3.3 8.2 5.9 14 6.2 0.7 2.5 1 1 1 2 2 2 0 Zinc finger, C2H2 type TP6A_N PF04406.9 gi|390939025|ref|YP_006402763.1| - 1.4e-23 82.3 0.1 2.5e-23 81.5 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|390939025|ref|YP_006402763.1| - 0.0036 17.1 0.0 0.0064 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) MSP7_C PF12948.2 gi|390939025|ref|YP_006402763.1| - 0.094 12.9 0.2 0.46 10.7 0.0 2.2 2 0 0 2 2 2 0 MSP7-like protein C-terminal domain Topo-VIb_trans PF09239.6 gi|390939026|ref|YP_006402764.1| - 1.3e-60 203.6 0.0 2.1e-60 202.8 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|390939026|ref|YP_006402764.1| - 2e-14 53.2 0.0 6.3e-14 51.6 0.0 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|390939026|ref|YP_006402764.1| - 7.9e-13 48.2 0.0 1.3e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|390939026|ref|YP_006402764.1| - 1.7e-07 30.1 0.1 4.5e-06 25.4 0.0 2.1 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.17 gi|390939026|ref|YP_006402764.1| - 0.0074 16.7 0.1 0.029 14.8 0.0 2.0 2 0 0 2 2 2 1 Ribosomal protein S13/S18 H2TH PF06831.9 gi|390939026|ref|YP_006402764.1| - 0.062 13.0 0.0 0.38 10.5 0.0 2.3 3 0 0 3 3 3 0 Formamidopyrimidine-DNA glycosylase H2TH domain HIT PF01230.18 gi|390939027|ref|YP_006402765.1| - 5.8e-13 49.2 0.0 8.8e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|390939027|ref|YP_006402765.1| - 3.5e-07 30.4 0.0 5e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|390939027|ref|YP_006402765.1| - 6.7e-07 28.9 0.0 9.8e-07 28.4 0.0 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Myosin_head PF00063.16 gi|390939028|ref|YP_006402766.1| - 0.0021 16.1 0.0 0.0021 16.1 0.0 1.0 1 0 0 1 1 1 1 Myosin head (motor domain) Ribosomal_L24e PF01246.15 gi|390939029|ref|YP_006402767.1| - 0.00025 20.8 0.1 0.00035 20.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L24e FYVE PF01363.16 gi|390939029|ref|YP_006402767.1| - 0.0071 16.2 0.1 0.0084 15.9 0.0 1.2 1 0 0 1 1 1 1 FYVE zinc finger zf-FCS PF06467.9 gi|390939029|ref|YP_006402767.1| - 0.026 14.1 0.1 0.037 13.6 0.1 1.2 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Vps39_2 PF10367.4 gi|390939029|ref|YP_006402767.1| - 0.13 12.4 1.1 5.5 7.2 0.1 2.0 1 1 1 2 2 2 0 Vacuolar sorting protein 39 domain 2 Ribosomal_S14 PF00253.16 gi|390939029|ref|YP_006402767.1| - 0.27 10.6 1.3 0.69 9.3 0.7 1.8 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e DUF2208 PF09973.4 gi|390939030|ref|YP_006402768.1| - 9.9e-40 136.2 8.5 1.2e-39 135.8 5.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF4131 PF13567.1 gi|390939030|ref|YP_006402768.1| - 2.8 7.3 6.5 5.5 6.3 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF3784 PF12650.2 gi|390939030|ref|YP_006402768.1| - 2.9 7.8 18.8 1.7 8.6 4.1 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF3784) DUF1430 PF07242.6 gi|390939030|ref|YP_006402768.1| - 3.1 7.9 10.2 2.6 8.1 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1430) DUF72 PF01904.13 gi|390939032|ref|YP_006402770.1| - 7.6e-41 140.3 0.0 9.2e-41 140.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.19 gi|390939032|ref|YP_006402770.1| - 0.0034 16.6 0.0 0.0077 15.5 0.0 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel ACT_4 PF13291.1 gi|390939033|ref|YP_006402771.1| - 8.1e-07 29.2 0.1 1.7e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|390939033|ref|YP_006402771.1| - 7.5e-06 25.3 0.1 3e-05 23.4 0.1 2.1 1 1 0 1 1 1 1 ACT domain Antitoxin-MazE PF04014.13 gi|390939033|ref|YP_006402771.1| - 1.1e-05 24.9 0.1 2.4e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ACT_6 PF13740.1 gi|390939033|ref|YP_006402771.1| - 0.0016 18.0 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 ACT domain MraZ PF02381.13 gi|390939033|ref|YP_006402771.1| - 0.0077 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 MraZ protein Pribosyltran PF00156.22 gi|390939034|ref|YP_006402772.1| - 2.4e-13 49.8 0.3 4.4e-13 49.0 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|390939034|ref|YP_006402772.1| - 0.014 15.2 0.0 0.042 13.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix DUF1641 PF07849.6 gi|390939034|ref|YP_006402772.1| - 0.031 13.9 0.1 0.059 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1641) Glyco_hydro_39 PF01229.12 gi|390939034|ref|YP_006402772.1| - 0.16 10.3 0.0 0.21 9.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 39 ResIII PF04851.10 gi|390939036|ref|YP_006402774.1| - 3.4e-20 72.6 0.0 2.4e-19 69.8 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|390939036|ref|YP_006402774.1| - 4e-18 65.0 0.0 1.1e-17 63.7 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|390939036|ref|YP_006402774.1| - 2.1e-10 40.3 0.0 1.8e-09 37.2 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|390939036|ref|YP_006402774.1| - 2.2e-08 33.2 0.2 6e-05 21.9 0.0 2.4 1 1 1 2 2 2 2 SNF2 family N-terminal domain ATP-synt_ab PF00006.20 gi|390939036|ref|YP_006402774.1| - 0.045 13.2 0.1 0.072 12.5 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.12 gi|390939036|ref|YP_006402774.1| - 0.053 12.9 0.0 0.75 9.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|390939036|ref|YP_006402774.1| - 0.055 13.6 1.3 1.9 8.6 0.1 3.6 3 1 0 3 3 3 0 AAA domain AAA_11 PF13086.1 gi|390939036|ref|YP_006402774.1| - 0.2 11.2 0.9 16 4.9 0.0 2.9 2 1 1 3 3 3 0 AAA domain Alba PF01918.16 gi|390939038|ref|YP_006402776.1| - 8.3e-19 66.9 1.2 1.1e-18 66.5 0.8 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|390939038|ref|YP_006402776.1| - 0.065 12.8 0.2 0.087 12.4 0.1 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Topoisom_bac PF01131.15 gi|390939039|ref|YP_006402777.1| - 1.9e-77 260.8 0.0 3e-77 260.1 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|390939039|ref|YP_006402777.1| - 1.8e-19 69.5 0.0 5.7e-19 67.9 0.0 1.9 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|390939039|ref|YP_006402777.1| - 1.1e-14 54.2 0.1 5.2e-14 52.0 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|390939039|ref|YP_006402777.1| - 1.1e-07 31.5 0.0 0.00014 21.6 0.0 3.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_19 PF13245.1 gi|390939039|ref|YP_006402777.1| - 3.2e-06 26.8 0.2 2.5e-05 23.9 0.4 2.2 2 0 0 2 2 2 1 Part of AAA domain ResIII PF04851.10 gi|390939039|ref|YP_006402777.1| - 8.2e-06 25.7 0.0 1.9e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|390939039|ref|YP_006402777.1| - 0.00058 19.3 0.0 0.0012 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|390939039|ref|YP_006402777.1| - 0.00065 19.1 0.0 0.0015 17.9 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|390939039|ref|YP_006402777.1| - 0.0013 18.9 0.1 0.0064 16.6 0.0 2.2 1 0 0 1 1 1 1 AAA domain Toprim_4 PF13662.1 gi|390939039|ref|YP_006402777.1| - 0.0021 18.0 0.0 0.0092 15.9 0.0 2.1 2 0 0 2 2 2 1 Toprim domain AAA_10 PF12846.2 gi|390939039|ref|YP_006402777.1| - 0.0077 15.7 0.1 0.1 12.0 0.0 2.8 3 0 0 3 3 3 1 AAA-like domain AAA_30 PF13604.1 gi|390939039|ref|YP_006402777.1| - 0.0097 15.4 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain DZR PF12773.2 gi|390939039|ref|YP_006402777.1| - 0.012 15.3 4.3 0.16 11.8 0.5 2.3 2 0 0 2 2 2 0 Double zinc ribbon Bac_DnaA PF00308.13 gi|390939039|ref|YP_006402777.1| - 0.04 13.5 0.1 0.22 11.1 0.0 2.3 3 0 0 3 3 2 0 Bacterial dnaA protein AAA_16 PF13191.1 gi|390939039|ref|YP_006402777.1| - 0.042 13.8 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain HycI PF01750.13 gi|390939039|ref|YP_006402777.1| - 0.054 13.0 0.0 0.15 11.5 0.0 1.8 1 0 0 1 1 1 0 Hydrogenase maturation protease PSCyt2 PF07583.6 gi|390939039|ref|YP_006402777.1| - 0.1 12.0 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1549) FYVE PF01363.16 gi|390939039|ref|YP_006402777.1| - 0.2 11.5 1.9 0.59 10.0 0.2 2.1 2 0 0 2 2 2 0 FYVE zinc finger Auto_anti-p27 PF06677.7 gi|390939039|ref|YP_006402777.1| - 0.21 11.3 1.0 1.4 8.7 0.0 2.5 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.11 gi|390939039|ref|YP_006402777.1| - 0.6 9.8 3.0 25 4.6 0.3 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain GFA PF04828.9 gi|390939039|ref|YP_006402777.1| - 2.8 7.9 3.7 9.3 6.2 0.0 2.9 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme UPF0547 PF10571.4 gi|390939039|ref|YP_006402777.1| - 4.9 6.9 8.0 4.9 6.9 0.0 3.3 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|390939039|ref|YP_006402777.1| - 5.8 6.8 9.5 13 5.7 0.4 3.4 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.14 gi|390939039|ref|YP_006402777.1| - 7.5 6.2 5.6 6.2 6.5 0.2 2.8 3 0 0 3 3 3 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|390939039|ref|YP_006402777.1| - 9.1 6.1 5.5 2.9 7.6 0.5 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Alba PF01918.16 gi|390939040|ref|YP_006402778.1| - 5.8e-06 25.8 0.0 7.9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Alba DUF367 PF04034.8 gi|390939041|ref|YP_006402779.1| - 1.2e-33 115.4 0.0 1.5e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|390939041|ref|YP_006402779.1| - 0.054 13.0 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 Possible Fer4-like domain in RNase L inhibitor, RLI Glyco_hydro_98M PF08306.6 gi|390939041|ref|YP_006402779.1| - 0.1 11.2 0.0 0.24 10.0 0.0 1.6 2 0 0 2 2 2 0 Glycosyl hydrolase family 98 AsnC_trans_reg PF01037.16 gi|390939042|ref|YP_006402780.1| - 1.5e-14 53.4 1.1 2.4e-14 52.7 0.8 1.3 1 0 0 1 1 1 1 AsnC family SnoaL PF07366.7 gi|390939042|ref|YP_006402780.1| - 0.074 12.6 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase GYD PF08734.6 gi|390939042|ref|YP_006402780.1| - 0.08 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 GYD domain OrfB_IS605 PF01385.14 gi|390939043|ref|YP_006402781.1| - 8.2e-61 205.2 0.3 1e-60 204.9 0.2 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|390939043|ref|YP_006402781.1| - 2.7e-14 52.5 0.0 4.4e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|390939043|ref|YP_006402781.1| - 0.12 12.4 0.0 0.4 10.7 0.0 1.9 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0081) tRNA-synt_1b PF00579.20 gi|390939044|ref|YP_006402782.1| - 1.4e-49 168.7 0.0 1.8e-48 165.1 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Lactamase_B_3 PF13483.1 gi|390939045|ref|YP_006402783.1| - 3.7e-24 85.2 0.0 4.8e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|390939045|ref|YP_006402783.1| - 1.8e-21 76.5 0.0 2.2e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|390939045|ref|YP_006402783.1| - 2.5e-12 46.8 2.8 4.3e-12 46.0 1.9 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.19 gi|390939046|ref|YP_006402784.1| - 1.9e-41 141.9 0.0 2.3e-41 141.6 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF1512 PF07431.7 gi|390939047|ref|YP_006402785.1| - 3.6e-116 387.7 5.3 4.3e-116 387.5 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Ost4 PF10215.4 gi|390939048|ref|YP_006402786.1| - 0.018 14.5 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Oligosaccaryltransferase DUF443 PF04276.7 gi|390939048|ref|YP_006402786.1| - 0.044 13.2 0.3 0.051 12.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF443) DUF4519 PF15012.1 gi|390939048|ref|YP_006402786.1| - 0.09 12.7 0.4 0.14 12.1 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) HypA PF01155.14 gi|390939048|ref|YP_006402786.1| - 0.12 12.0 0.1 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|390939048|ref|YP_006402786.1| - 0.12 11.6 1.9 9.4 5.6 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|390939048|ref|YP_006402786.1| - 0.13 11.4 0.7 3.8 6.8 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|390939048|ref|YP_006402786.1| - 0.29 10.8 3.4 1 9.0 0.2 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|390939048|ref|YP_006402786.1| - 0.43 10.5 2.5 1.4 8.8 1.8 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|390939048|ref|YP_006402786.1| - 1.5 8.5 4.6 15 5.3 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|390939048|ref|YP_006402786.1| - 2.4 7.7 5.0 17 5.1 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain Rifin_STEVOR PF02009.11 gi|390939048|ref|YP_006402786.1| - 3.6 7.1 6.4 2.6 7.6 3.7 1.3 1 1 0 1 1 1 0 Rifin/stevor family DUF1805 PF08827.6 gi|390939049|ref|YP_006402787.1| - 6.1e-21 73.9 1.0 8.9e-21 73.4 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) PK PF00224.16 gi|390939050|ref|YP_006402788.1| - 1.9e-82 276.6 0.1 2.4e-82 276.3 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|390939050|ref|YP_006402788.1| - 1.2e-07 31.2 1.2 6.7e-07 28.8 0.0 2.6 3 0 0 3 3 3 1 Pyruvate kinase, alpha/beta domain TIM PF00121.13 gi|390939051|ref|YP_006402789.1| - 3.4e-32 111.4 0.1 7.4e-31 107.0 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|390939051|ref|YP_006402789.1| - 6.9e-07 28.5 1.0 1.1e-06 27.9 0.7 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|390939051|ref|YP_006402789.1| - 0.0011 18.0 0.1 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DHO_dh PF01180.16 gi|390939051|ref|YP_006402789.1| - 0.0065 15.4 1.3 0.0088 15.0 0.9 1.3 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase FMN_dh PF01070.13 gi|390939051|ref|YP_006402789.1| - 0.052 12.3 0.4 0.089 11.6 0.3 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase FBPase_3 PF01950.11 gi|390939052|ref|YP_006402790.1| - 6.2e-187 620.9 0.0 7.1e-187 620.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase ABC_tran PF00005.22 gi|390939053|ref|YP_006402791.1| - 5.9e-39 133.5 0.0 7.4e-20 71.6 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|390939053|ref|YP_006402791.1| - 7e-13 49.1 8.4 0.0013 18.7 0.2 4.3 2 2 0 3 3 3 3 AAA domain SMC_N PF02463.14 gi|390939053|ref|YP_006402791.1| - 7.7e-12 44.9 3.3 0.00013 21.3 0.2 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|390939053|ref|YP_006402791.1| - 1.6e-10 40.3 4.3 4.5e-10 38.9 3.0 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|390939053|ref|YP_006402791.1| - 2.3e-08 33.2 10.0 3.3e-08 32.8 3.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_22 PF13401.1 gi|390939053|ref|YP_006402791.1| - 6.6e-08 32.7 0.4 0.0028 17.8 0.0 3.5 3 1 0 3 3 3 2 AAA domain Fer4_6 PF12837.2 gi|390939053|ref|YP_006402791.1| - 8.1e-06 25.4 12.6 7.6e-05 22.4 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|390939053|ref|YP_006402791.1| - 1.7e-05 25.0 5.2 4.8e-05 23.6 3.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|390939053|ref|YP_006402791.1| - 5.1e-05 23.0 7.4 0.00011 22.0 5.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_29 PF13555.1 gi|390939053|ref|YP_006402791.1| - 9.2e-05 21.8 0.2 0.44 10.0 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain DUF258 PF03193.11 gi|390939053|ref|YP_006402791.1| - 9.2e-05 21.6 0.1 0.2 10.8 0.0 3.1 3 0 0 3 3 3 1 Protein of unknown function, DUF258 Fer4_2 PF12797.2 gi|390939053|ref|YP_006402791.1| - 0.0001 22.0 2.8 0.0001 22.0 1.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_17 PF13207.1 gi|390939053|ref|YP_006402791.1| - 0.00012 22.8 4.7 0.024 15.4 0.1 3.1 2 2 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|390939053|ref|YP_006402791.1| - 0.00017 21.5 0.4 0.013 15.4 0.0 3.3 2 2 2 4 4 4 1 AAA domain AAA_23 PF13476.1 gi|390939053|ref|YP_006402791.1| - 0.00021 21.7 0.2 0.13 12.5 0.1 2.6 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|390939053|ref|YP_006402791.1| - 0.00021 21.0 0.3 0.32 10.7 0.0 3.1 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|390939053|ref|YP_006402791.1| - 0.00025 20.9 0.3 0.34 10.8 0.0 3.4 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|390939053|ref|YP_006402791.1| - 0.00026 21.1 0.0 0.34 11.1 0.0 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Fer4_10 PF13237.1 gi|390939053|ref|YP_006402791.1| - 0.00039 20.1 21.6 0.0014 18.3 1.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|390939053|ref|YP_006402791.1| - 0.00072 19.7 7.5 0.002 18.3 5.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_16 PF13191.1 gi|390939053|ref|YP_006402791.1| - 0.00093 19.2 1.1 0.33 10.9 0.0 3.1 2 2 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|390939053|ref|YP_006402791.1| - 0.001 19.3 0.2 0.85 9.9 0.0 3.1 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|390939053|ref|YP_006402791.1| - 0.0013 17.5 0.0 0.18 10.4 0.0 2.3 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein Miro PF08477.8 gi|390939053|ref|YP_006402791.1| - 0.0017 18.8 0.1 2.3 8.7 0.0 2.8 3 0 0 3 3 2 1 Miro-like protein AAA_25 PF13481.1 gi|390939053|ref|YP_006402791.1| - 0.0017 17.7 0.4 0.19 11.0 0.0 3.1 3 0 0 3 3 3 1 AAA domain DUF359 PF04019.7 gi|390939053|ref|YP_006402791.1| - 0.0039 16.5 0.8 0.045 13.1 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF359) RNA_helicase PF00910.17 gi|390939053|ref|YP_006402791.1| - 0.0041 17.2 0.0 2 8.6 0.0 2.6 2 0 0 2 2 2 1 RNA helicase AAA_30 PF13604.1 gi|390939053|ref|YP_006402791.1| - 0.0048 16.4 0.2 1.5 8.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain Fer4_3 PF12798.2 gi|390939053|ref|YP_006402791.1| - 0.0059 17.0 4.4 0.0059 17.0 3.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain SRP54 PF00448.17 gi|390939053|ref|YP_006402791.1| - 0.006 16.0 0.4 0.65 9.4 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Fer4_8 PF13183.1 gi|390939053|ref|YP_006402791.1| - 0.0083 16.1 3.5 0.018 15.0 2.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|390939053|ref|YP_006402791.1| - 0.012 16.3 2.1 0.012 16.3 1.5 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain ArgK PF03308.11 gi|390939053|ref|YP_006402791.1| - 0.014 14.1 0.6 3.7 6.2 0.0 2.3 2 0 0 2 2 2 0 ArgK protein AAA_33 PF13671.1 gi|390939053|ref|YP_006402791.1| - 0.015 15.1 0.0 1.5 8.7 0.0 2.9 3 0 0 3 3 2 0 AAA domain MMR_HSR1 PF01926.18 gi|390939053|ref|YP_006402791.1| - 0.017 15.1 1.0 5.6 6.9 0.0 2.7 3 0 0 3 3 2 0 50S ribosome-binding GTPase Thymidylate_kin PF02223.12 gi|390939053|ref|YP_006402791.1| - 0.019 14.3 0.0 8.7 5.6 0.0 3.1 3 0 0 3 3 3 0 Thymidylate kinase AAA_10 PF12846.2 gi|390939053|ref|YP_006402791.1| - 0.022 14.2 1.4 2.4 7.5 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain ATP_bind_1 PF03029.12 gi|390939053|ref|YP_006402791.1| - 0.026 14.0 0.6 3.1 7.2 0.0 3.5 4 0 0 4 4 4 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.1 gi|390939053|ref|YP_006402791.1| - 0.026 13.5 0.1 5.8 5.8 0.0 2.9 4 0 0 4 4 3 0 AAA ATPase domain NACHT PF05729.7 gi|390939053|ref|YP_006402791.1| - 0.027 14.1 0.7 0.46 10.1 0.0 2.5 2 0 0 2 2 2 0 NACHT domain KAP_NTPase PF07693.9 gi|390939053|ref|YP_006402791.1| - 0.036 13.0 0.0 0.24 10.3 0.0 2.0 2 0 0 2 2 2 0 KAP family P-loop domain AAA_13 PF13166.1 gi|390939053|ref|YP_006402791.1| - 0.042 12.3 0.0 3.1 6.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_13 PF13370.1 gi|390939053|ref|YP_006402791.1| - 0.068 13.5 1.3 0.24 11.8 0.9 2.0 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|390939053|ref|YP_006402791.1| - 0.089 13.1 6.2 0.16 12.3 1.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_28 PF13521.1 gi|390939053|ref|YP_006402791.1| - 0.095 12.6 0.2 16 5.3 0.0 3.1 3 1 0 3 3 3 0 AAA domain T2SE PF00437.15 gi|390939053|ref|YP_006402791.1| - 0.1 11.4 0.2 2.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|390939053|ref|YP_006402791.1| - 0.2 11.3 0.9 2.6 7.7 0.0 2.5 2 0 0 2 2 2 0 NTPase NB-ARC PF00931.17 gi|390939053|ref|YP_006402791.1| - 0.22 10.3 1.2 2.3 6.9 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.1 gi|390939053|ref|YP_006402791.1| - 0.28 10.7 2.8 0.29 10.6 0.0 2.3 3 0 0 3 3 2 0 AAA domain Fer4_4 PF12800.2 gi|390939053|ref|YP_006402791.1| - 0.57 10.6 13.3 0.043 14.1 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|390939053|ref|YP_006402791.1| - 0.64 10.4 8.9 0.087 13.2 2.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF87 PF01935.12 gi|390939053|ref|YP_006402791.1| - 0.66 9.7 4.1 25 4.5 1.0 2.9 2 1 0 2 2 2 0 Domain of unknown function DUF87 Fer4_15 PF13459.1 gi|390939053|ref|YP_006402791.1| - 3.9 8.0 9.0 0.71 10.4 2.4 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain zf-NADH-PPase PF09297.6 gi|390939054|ref|YP_006402792.1| - 4.4e-05 22.8 0.4 0.00013 21.3 0.3 1.8 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|390939054|ref|YP_006402792.1| - 0.00017 20.7 1.6 0.00032 19.8 1.1 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger RNA_POL_M_15KD PF02150.11 gi|390939054|ref|YP_006402792.1| - 0.0002 20.9 0.8 0.00037 20.1 0.6 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|390939054|ref|YP_006402792.1| - 0.0004 20.1 0.5 0.00066 19.4 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF2387 PF09526.5 gi|390939054|ref|YP_006402792.1| - 0.00044 20.1 1.8 0.00066 19.5 1.2 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|390939054|ref|YP_006402792.1| - 0.00061 19.1 1.5 0.43 10.1 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|390939054|ref|YP_006402792.1| - 0.0021 17.6 0.9 0.0048 16.5 0.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|390939054|ref|YP_006402792.1| - 0.0075 16.5 0.9 0.013 15.7 0.6 1.6 1 1 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|390939054|ref|YP_006402792.1| - 0.0097 15.6 0.4 0.016 14.9 0.3 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain IBR PF01485.16 gi|390939054|ref|YP_006402792.1| - 0.013 15.3 0.5 0.025 14.4 0.3 1.4 1 0 0 1 1 1 0 IBR domain zf-ribbon_3 PF13248.1 gi|390939054|ref|YP_006402792.1| - 0.017 14.3 4.6 0.14 11.4 3.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|390939054|ref|YP_006402792.1| - 0.024 14.3 4.5 0.12 12.1 3.3 1.9 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.11 gi|390939054|ref|YP_006402792.1| - 0.025 14.2 0.3 0.025 14.2 0.2 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_ribbon_recom PF13408.1 gi|390939054|ref|YP_006402792.1| - 0.031 14.5 4.7 1.9 8.8 1.4 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain FYDLN_acid PF09538.5 gi|390939054|ref|YP_006402792.1| - 0.032 14.7 2.1 0.046 14.2 1.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-C4_Topoisom PF01396.14 gi|390939054|ref|YP_006402792.1| - 0.04 13.4 3.4 0.74 9.3 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF2543 PF10820.3 gi|390939054|ref|YP_006402792.1| - 0.042 13.8 0.7 0.051 13.5 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2543) GFA PF04828.9 gi|390939054|ref|YP_006402792.1| - 0.042 13.7 0.7 4.3 7.3 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Elf1 PF05129.8 gi|390939054|ref|YP_006402792.1| - 0.042 13.5 0.6 0.084 12.5 0.4 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DNA_RNApol_7kD PF03604.8 gi|390939054|ref|YP_006402792.1| - 0.055 12.9 1.4 0.15 11.5 1.0 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF3987 PF13148.1 gi|390939054|ref|YP_006402792.1| - 0.062 11.8 0.0 0.062 11.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Ribosomal_L37ae PF01780.14 gi|390939054|ref|YP_006402792.1| - 0.1 12.4 0.7 0.28 11.0 0.5 1.7 1 1 0 1 1 1 0 Ribosomal L37ae protein family eIF-5_eIF-2B PF01873.12 gi|390939054|ref|YP_006402792.1| - 0.17 11.5 2.2 0.45 10.1 0.3 2.2 2 1 0 2 2 2 0 Domain found in IF2B/IF5 Nudix_N_2 PF14803.1 gi|390939054|ref|YP_006402792.1| - 0.18 11.5 1.6 3.6 7.3 1.4 2.3 1 1 1 2 2 2 0 Nudix N-terminal HypA PF01155.14 gi|390939054|ref|YP_006402792.1| - 0.42 10.3 2.8 2.6 7.7 0.4 2.5 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|390939054|ref|YP_006402792.1| - 0.53 10.3 5.1 3.1 7.9 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.2 gi|390939054|ref|YP_006402792.1| - 0.64 10.0 4.1 7.3 6.6 2.6 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|390939054|ref|YP_006402792.1| - 0.7 9.8 4.7 12 5.8 0.3 2.3 1 1 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|390939054|ref|YP_006402792.1| - 1.1 9.2 4.4 3 7.7 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|390939054|ref|YP_006402792.1| - 1.8 8.3 6.7 22 4.8 4.6 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Ogr_Delta PF04606.7 gi|390939054|ref|YP_006402792.1| - 3.9 7.2 5.4 23 4.7 0.2 2.5 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger DUF1936 PF09151.5 gi|390939054|ref|YP_006402792.1| - 5 6.7 5.8 29 4.2 4.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1936) Ribosomal_S17e PF00833.13 gi|390939055|ref|YP_006402793.1| - 1.8e-22 79.3 0.5 2e-22 79.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4231 PF14015.1 gi|390939057|ref|YP_006402795.1| - 1.4 8.9 3.7 23 4.9 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) DUF4423 PF14394.1 gi|390939058|ref|YP_006402796.1| - 0.0062 16.1 0.0 0.014 14.9 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) AdoHcyase PF05221.12 gi|390939059|ref|YP_006402797.1| - 2e-70 236.8 0.0 2.2e-70 236.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|390939059|ref|YP_006402797.1| - 3.7e-54 182.9 0.0 5.8e-54 182.3 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|390939059|ref|YP_006402797.1| - 6.4e-09 35.2 0.3 1.3e-08 34.2 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|390939059|ref|YP_006402797.1| - 1.5e-06 27.6 0.0 2.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|390939059|ref|YP_006402797.1| - 0.029 14.3 0.5 0.12 12.3 0.1 2.2 2 0 0 2 2 2 0 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|390939059|ref|YP_006402797.1| - 0.12 11.9 0.7 0.32 10.5 0.4 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain zf-RNPHF PF08080.7 gi|390939059|ref|YP_006402797.1| - 0.18 11.3 0.3 0.32 10.5 0.2 1.4 1 0 0 1 1 1 0 RNPHF zinc finger TGT_C2 PF14810.1 gi|390939060|ref|YP_006402798.1| - 1.5e-18 66.3 0.0 3e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|390939060|ref|YP_006402798.1| - 1.5e-15 56.6 0.4 2.2e-15 56.1 0.0 1.4 2 0 0 2 2 2 1 PUA domain PAC2 PF09754.4 gi|390939061|ref|YP_006402799.1| - 7.1e-34 117.5 0.1 8.6e-34 117.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT PF01702.13 gi|390939062|ref|YP_006402800.1| - 1.7e-47 161.6 0.0 2.6e-47 161.1 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|390939062|ref|YP_006402800.1| - 0.039 13.7 0.1 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Lsm_C PF14894.1 gi|390939063|ref|YP_006402801.1| - 1.4e-28 98.1 0.9 7.9e-28 95.7 0.5 2.0 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.17 gi|390939063|ref|YP_006402801.1| - 7.3e-09 35.0 0.1 1.1e-08 34.4 0.1 1.3 1 0 0 1 1 1 1 LSM domain Gemin6 PF06372.7 gi|390939063|ref|YP_006402801.1| - 0.00058 19.2 0.0 0.00085 18.6 0.0 1.3 1 0 0 1 1 1 1 Gemin6 protein SM-ATX PF14438.1 gi|390939063|ref|YP_006402801.1| - 0.0031 17.4 0.0 0.0047 16.8 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain Cpn60_TCP1 PF00118.19 gi|390939065|ref|YP_006402803.1| - 4.6e-168 559.7 11.0 5.3e-168 559.6 7.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DMA PF03474.9 gi|390939065|ref|YP_006402803.1| - 0.1 12.4 0.4 9.8 6.1 0.0 2.7 2 0 0 2 2 2 0 DMRTA motif HK97-gp10_like PF04883.7 gi|390939065|ref|YP_006402803.1| - 0.54 11.2 3.4 39 5.2 0.0 4.5 4 1 0 4 4 4 0 Bacteriophage HK97-gp10, putative tail-component Pyr_redox_2 PF07992.9 gi|390939066|ref|YP_006402804.1| - 1e-30 107.1 0.6 1.3e-30 106.7 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|390939066|ref|YP_006402804.1| - 8.9e-15 55.2 0.2 4.1e-11 43.3 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|390939066|ref|YP_006402804.1| - 1.7e-13 50.7 4.0 1.2e-10 41.5 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|390939066|ref|YP_006402804.1| - 4.2e-12 45.6 3.1 1.4e-06 27.4 1.1 3.8 3 1 1 4 4 4 3 FAD binding domain GIDA PF01134.17 gi|390939066|ref|YP_006402804.1| - 7.3e-10 38.2 8.7 4.8e-06 25.6 0.5 3.7 4 1 0 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|390939066|ref|YP_006402804.1| - 3.6e-09 35.6 0.7 0.00038 19.0 0.1 3.2 3 0 0 3 3 3 2 HI0933-like protein Thi4 PF01946.12 gi|390939066|ref|YP_006402804.1| - 1.5e-07 30.7 4.7 3.8e-05 22.9 0.1 3.0 2 1 1 3 3 3 2 Thi4 family FAD_oxidored PF12831.2 gi|390939066|ref|YP_006402804.1| - 2.7e-07 30.0 5.2 6.9e-07 28.6 0.0 3.0 3 1 1 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|390939066|ref|YP_006402804.1| - 9e-07 28.2 2.3 4.7e-05 22.6 0.4 2.5 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|390939066|ref|YP_006402804.1| - 2.2e-06 26.8 5.3 0.00056 18.9 1.4 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|390939066|ref|YP_006402804.1| - 0.00017 21.8 0.3 0.18 12.0 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|390939066|ref|YP_006402804.1| - 0.00055 19.9 4.7 0.022 14.8 1.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|390939066|ref|YP_006402804.1| - 0.0011 17.6 2.9 0.38 9.3 0.6 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|390939066|ref|YP_006402804.1| - 0.0018 17.2 0.9 0.094 11.6 0.2 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|390939066|ref|YP_006402804.1| - 0.015 14.8 0.1 0.53 9.8 0.0 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.1 gi|390939066|ref|YP_006402804.1| - 0.016 14.1 0.2 7.1 5.4 0.0 3.0 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_Gly3P_dh_N PF01210.18 gi|390939066|ref|YP_006402804.1| - 0.018 14.7 0.7 0.11 12.1 0.0 2.1 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PALP PF00291.20 gi|390939066|ref|YP_006402804.1| - 0.062 12.5 0.1 1.3 8.2 0.0 2.2 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme Shikimate_DH PF01488.15 gi|390939066|ref|YP_006402804.1| - 0.12 12.4 0.5 7.5 6.6 0.1 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|390939066|ref|YP_006402804.1| - 0.14 11.9 0.8 17 5.1 0.0 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding Aldo_ket_red PF00248.16 gi|390939067|ref|YP_006402805.1| - 1.2e-73 247.3 0.0 1.4e-73 247.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF2122 PF09895.4 gi|390939068|ref|YP_006402806.1| - 2.4e-22 79.1 0.1 2.9e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) DNA_methylase PF00145.12 gi|390939069|ref|YP_006402807.1| - 1.3e-45 155.9 0.0 1.6e-31 109.6 0.0 2.1 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.5 gi|390939069|ref|YP_006402807.1| - 0.0031 17.0 0.0 0.0054 16.2 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TFIIE_alpha PF02002.12 gi|390939070|ref|YP_006402808.1| - 3.3e-10 39.3 0.6 2.4e-09 36.6 0.1 2.0 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.7 gi|390939070|ref|YP_006402808.1| - 0.011 15.0 0.8 0.023 14.0 0.6 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.14 gi|390939070|ref|YP_006402808.1| - 0.066 12.8 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family SieB PF14163.1 gi|390939070|ref|YP_006402808.1| - 0.11 12.0 0.1 0.22 11.1 0.1 1.5 1 0 0 1 1 1 0 Superinfection exclusion protein B zinc_ribbon_4 PF13717.1 gi|390939070|ref|YP_006402808.1| - 0.13 11.9 0.2 0.3 10.8 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|390939070|ref|YP_006402808.1| - 0.14 11.7 0.1 0.31 10.6 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|390939070|ref|YP_006402808.1| - 0.32 11.3 0.0 0.32 11.3 0.0 2.0 3 0 0 3 3 3 0 Zinc-finger double domain DUF1610 PF07754.6 gi|390939070|ref|YP_006402808.1| - 1.9 8.6 5.1 4.6 7.4 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HMA PF00403.21 gi|390939071|ref|YP_006402809.1| - 0.053 13.6 0.1 0.08 13.1 0.1 1.3 1 0 0 1 1 1 0 Heavy-metal-associated domain AAA PF00004.24 gi|390939072|ref|YP_006402810.1| - 8.8e-44 148.9 0.4 1.2e-42 145.2 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|390939072|ref|YP_006402810.1| - 5.3e-07 29.7 0.7 2e-06 27.8 0.0 2.3 3 0 0 3 3 2 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|390939072|ref|YP_006402810.1| - 7.6e-06 25.7 0.1 2.8e-05 23.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|390939072|ref|YP_006402810.1| - 8.9e-06 25.8 0.2 0.0014 18.6 0.0 2.4 2 1 1 3 3 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|390939072|ref|YP_006402810.1| - 9.2e-06 24.8 0.0 2.6e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|390939072|ref|YP_006402810.1| - 8.4e-05 22.7 0.1 0.001 19.1 0.1 2.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|390939072|ref|YP_006402810.1| - 0.00014 21.0 0.3 0.0005 19.2 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin DUF815 PF05673.8 gi|390939072|ref|YP_006402810.1| - 0.00021 20.3 0.1 0.0006 18.8 0.0 1.8 2 1 0 2 2 1 1 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|390939072|ref|YP_006402810.1| - 0.00023 21.9 1.0 0.0005 20.8 0.2 2.2 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|390939072|ref|YP_006402810.1| - 0.00057 19.7 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|390939072|ref|YP_006402810.1| - 0.00089 18.7 0.6 0.062 12.6 0.1 2.8 2 1 1 3 3 3 1 AAA domain Mg_chelatase PF01078.16 gi|390939072|ref|YP_006402810.1| - 0.001 18.2 0.0 0.0022 17.1 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|390939072|ref|YP_006402810.1| - 0.0013 18.6 0.1 0.0034 17.3 0.0 1.7 2 0 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|390939072|ref|YP_006402810.1| - 0.0015 18.2 0.4 0.0071 16.0 0.0 2.4 2 1 0 2 2 2 1 Archaeal ATPase AAA_33 PF13671.1 gi|390939072|ref|YP_006402810.1| - 0.0018 18.1 0.3 0.0097 15.7 0.2 2.3 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|390939072|ref|YP_006402810.1| - 0.0026 16.5 0.0 0.0052 15.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|390939072|ref|YP_006402810.1| - 0.0032 16.9 0.2 0.0078 15.6 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein NACHT PF05729.7 gi|390939072|ref|YP_006402810.1| - 0.0043 16.7 0.2 0.027 14.1 0.0 2.1 2 0 0 2 2 2 1 NACHT domain ATP-synt_ab PF00006.20 gi|390939072|ref|YP_006402810.1| - 0.0047 16.4 0.1 0.012 15.1 0.0 1.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|390939072|ref|YP_006402810.1| - 0.0062 16.7 0.1 0.023 14.8 0.0 2.0 2 0 0 2 2 1 1 RNA helicase AAA_24 PF13479.1 gi|390939072|ref|YP_006402810.1| - 0.0091 15.6 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|390939072|ref|YP_006402810.1| - 0.011 15.4 0.1 0.029 14.1 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain ABC_tran PF00005.22 gi|390939072|ref|YP_006402810.1| - 0.026 14.8 0.1 0.082 13.2 0.0 1.9 2 0 0 2 2 2 0 ABC transporter TFIID-18kDa PF02269.11 gi|390939072|ref|YP_006402810.1| - 0.029 14.1 0.1 0.084 12.6 0.1 1.8 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit AAA_18 PF13238.1 gi|390939072|ref|YP_006402810.1| - 0.032 14.5 0.3 0.14 12.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|390939072|ref|YP_006402810.1| - 0.044 12.6 0.0 0.083 11.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain KaiC PF06745.8 gi|390939072|ref|YP_006402810.1| - 0.058 12.5 0.4 0.19 10.8 0.0 2.0 2 1 0 2 2 2 0 KaiC Sigma54_activat PF00158.21 gi|390939072|ref|YP_006402810.1| - 0.066 12.6 0.1 0.24 10.8 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|390939072|ref|YP_006402810.1| - 0.067 13.2 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF2246 PF10229.4 gi|390939072|ref|YP_006402810.1| - 0.098 11.9 0.1 0.16 11.2 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2246) AAA_10 PF12846.2 gi|390939072|ref|YP_006402810.1| - 0.16 11.3 1.1 2.8 7.2 0.0 2.9 1 1 1 3 3 3 0 AAA-like domain Erp_C PF06780.6 gi|390939072|ref|YP_006402810.1| - 0.71 9.7 6.0 0.28 11.0 0.2 2.7 3 0 0 3 3 3 0 Erp protein C-terminus HTH_3 PF01381.17 gi|390939073|ref|YP_006402811.1| - 4.7e-11 42.3 1.2 8.4e-11 41.5 0.8 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|390939073|ref|YP_006402811.1| - 2.5e-10 40.3 0.7 4.1e-10 39.7 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|390939073|ref|YP_006402811.1| - 7.1e-10 38.7 0.2 1.2e-09 38.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|390939073|ref|YP_006402811.1| - 5.1e-05 22.8 0.3 0.00011 21.7 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4428 PF14471.1 gi|390939073|ref|YP_006402811.1| - 0.0032 17.1 1.1 0.0074 16.0 0.8 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) DUF2072 PF09845.4 gi|390939073|ref|YP_006402811.1| - 0.0082 16.0 1.0 0.013 15.4 0.7 1.4 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) HTH_37 PF13744.1 gi|390939073|ref|YP_006402811.1| - 0.027 14.2 0.1 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1178 PF06676.6 gi|390939073|ref|YP_006402811.1| - 0.36 11.0 2.3 0.21 11.7 0.5 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) zf-DNL PF05180.7 gi|390939073|ref|YP_006402811.1| - 0.43 10.3 4.9 0.43 10.3 2.5 1.6 2 0 0 2 2 2 0 DNL zinc finger DZR PF12773.2 gi|390939073|ref|YP_006402811.1| - 2.3 8.0 6.6 7.6 6.4 0.6 2.1 1 1 1 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|390939073|ref|YP_006402811.1| - 4.2 6.9 7.0 10 5.7 1.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain MMR_HSR1 PF01926.18 gi|390939074|ref|YP_006402812.1| - 3.2e-21 75.4 0.0 6.6e-21 74.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|390939074|ref|YP_006402812.1| - 7.3e-13 48.0 0.0 1.3e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|390939074|ref|YP_006402812.1| - 1.6e-08 34.2 0.1 1.1e-06 28.2 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|390939074|ref|YP_006402812.1| - 1.3e-05 24.5 0.0 3e-05 23.3 0.0 1.6 1 1 0 1 1 1 1 ADP-ribosylation factor family PduV-EutP PF10662.4 gi|390939074|ref|YP_006402812.1| - 0.00011 21.6 0.8 0.0011 18.4 0.5 2.3 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|390939074|ref|YP_006402812.1| - 0.00085 19.8 0.0 0.0016 18.8 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein GTP-bdg_N PF13167.1 gi|390939074|ref|YP_006402812.1| - 0.00095 19.2 0.2 0.0031 17.5 0.0 1.9 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|390939074|ref|YP_006402812.1| - 0.0013 18.1 2.5 0.09 12.2 0.1 2.6 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|390939074|ref|YP_006402812.1| - 0.0096 16.2 0.0 0.019 15.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Dynamin_N PF00350.18 gi|390939074|ref|YP_006402812.1| - 0.012 15.3 0.1 0.26 11.0 0.0 2.2 2 0 0 2 2 2 0 Dynamin family AAA_28 PF13521.1 gi|390939074|ref|YP_006402812.1| - 0.021 14.8 0.0 0.046 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|390939074|ref|YP_006402812.1| - 0.032 14.5 0.4 0.073 13.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|390939074|ref|YP_006402812.1| - 0.045 13.2 0.0 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Trm56 PF01994.11 gi|390939075|ref|YP_006402813.1| - 3.5e-49 165.5 0.0 4.3e-49 165.2 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.1 gi|390939075|ref|YP_006402813.1| - 0.13 11.4 0.1 0.25 10.5 0.0 1.5 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP Imm13 PF15564.1 gi|390939076|ref|YP_006402814.1| - 0.0062 16.2 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 Immunity protein 13 NPV_P10 PF05531.7 gi|390939077|ref|YP_006402815.1| - 6.2e-07 29.5 25.1 0.0031 17.7 1.4 3.6 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein DUF2730 PF10805.3 gi|390939077|ref|YP_006402815.1| - 1e-06 28.4 1.3 0.01 15.5 0.1 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF2730) Baculo_PEP_C PF04513.7 gi|390939077|ref|YP_006402815.1| - 5e-06 26.3 36.6 0.0012 18.6 13.3 3.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus TBPIP PF07106.8 gi|390939077|ref|YP_006402815.1| - 2.3e-05 24.0 4.3 0.0096 15.4 0.6 2.4 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF948 PF06103.6 gi|390939077|ref|YP_006402815.1| - 3.3e-05 23.6 19.5 0.0024 17.7 4.5 3.4 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|390939077|ref|YP_006402815.1| - 4e-05 23.4 17.1 0.0036 17.1 2.0 3.4 2 1 2 4 4 3 3 Protein of unknown function (DUF1664) Prominin PF05478.6 gi|390939077|ref|YP_006402815.1| - 4.1e-05 21.3 11.8 6.2e-05 20.7 8.2 1.2 1 0 0 1 1 1 1 Prominin WEMBL PF05701.6 gi|390939077|ref|YP_006402815.1| - 4.5e-05 22.1 2.5 6.6e-05 21.5 1.7 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light Laminin_II PF06009.7 gi|390939077|ref|YP_006402815.1| - 9.7e-05 22.1 21.0 0.015 15.0 5.5 2.8 1 1 2 3 3 3 3 Laminin Domain II Reo_sigmaC PF04582.7 gi|390939077|ref|YP_006402815.1| - 0.00045 19.5 36.9 0.059 12.5 10.0 2.3 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|390939077|ref|YP_006402815.1| - 0.00066 18.4 4.5 0.00075 18.2 1.0 1.8 1 1 1 2 2 2 2 Spc7 kinetochore protein Seryl_tRNA_N PF02403.17 gi|390939077|ref|YP_006402815.1| - 0.00078 19.4 2.8 0.18 11.8 0.2 2.4 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Myosin_tail_1 PF01576.14 gi|390939077|ref|YP_006402815.1| - 0.00081 17.2 0.6 0.0011 16.8 0.4 1.0 1 0 0 1 1 1 1 Myosin tail RmuC PF02646.11 gi|390939077|ref|YP_006402815.1| - 0.00093 18.1 7.7 0.082 11.7 0.4 3.1 1 1 2 3 3 3 1 RmuC family IFT57 PF10498.4 gi|390939077|ref|YP_006402815.1| - 0.0011 17.7 1.9 0.0019 17.0 1.3 1.3 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 DUF3584 PF12128.3 gi|390939077|ref|YP_006402815.1| - 0.0011 16.4 0.9 0.0015 15.9 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) EzrA PF06160.7 gi|390939077|ref|YP_006402815.1| - 0.0014 16.8 1.4 0.0028 15.9 0.9 1.4 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA AAA_13 PF13166.1 gi|390939077|ref|YP_006402815.1| - 0.0014 17.1 10.7 0.002 16.6 7.4 1.1 1 0 0 1 1 1 1 AAA domain COG2 PF06148.6 gi|390939077|ref|YP_006402815.1| - 0.0021 17.9 10.9 1.3 8.8 0.1 3.2 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 WXG100 PF06013.7 gi|390939077|ref|YP_006402815.1| - 0.0033 17.4 3.4 0.72 9.8 0.2 3.4 1 1 2 3 3 3 1 Proteins of 100 residues with WXG TMCO5 PF14992.1 gi|390939077|ref|YP_006402815.1| - 0.0034 16.5 0.3 0.0049 16.0 0.2 1.2 1 0 0 1 1 1 1 TMCO5 family XhlA PF10779.4 gi|390939077|ref|YP_006402815.1| - 0.0035 17.2 2.0 0.82 9.6 0.1 2.7 2 0 0 2 2 2 1 Haemolysin XhlA Snapin_Pallidin PF14712.1 gi|390939077|ref|YP_006402815.1| - 0.0037 17.5 4.1 0.4 11.0 0.4 3.0 1 1 2 3 3 3 2 Snapin/Pallidin FlaC_arch PF05377.6 gi|390939077|ref|YP_006402815.1| - 0.0037 17.1 17.3 0.28 11.1 1.9 4.5 1 1 3 4 4 4 1 Flagella accessory protein C (FlaC) DUF677 PF05055.7 gi|390939077|ref|YP_006402815.1| - 0.0039 15.9 14.7 0.15 10.7 2.2 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF677) Phasin PF05597.6 gi|390939077|ref|YP_006402815.1| - 0.0078 15.9 7.8 0.036 13.8 0.4 2.3 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) BLOC1_2 PF10046.4 gi|390939077|ref|YP_006402815.1| - 0.012 15.6 10.3 0.014 15.5 1.1 3.1 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tweety PF04906.8 gi|390939077|ref|YP_006402815.1| - 0.014 13.8 11.1 0.042 12.2 3.0 2.1 1 1 1 2 2 2 0 Tweety HSBP1 PF06825.7 gi|390939077|ref|YP_006402815.1| - 0.015 14.8 0.0 2.8 7.5 0.0 3.6 2 2 1 3 3 3 0 Heat shock factor binding protein 1 MCPsignal PF00015.16 gi|390939077|ref|YP_006402815.1| - 0.023 14.2 28.8 0.37 10.3 3.5 2.4 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Syntaxin_2 PF14523.1 gi|390939077|ref|YP_006402815.1| - 0.023 14.6 15.4 0.091 12.8 2.7 2.5 1 1 1 2 2 2 0 Syntaxin-like protein Nup54 PF13874.1 gi|390939077|ref|YP_006402815.1| - 0.024 14.3 0.4 0.25 10.9 0.1 2.1 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF16 PF01519.11 gi|390939077|ref|YP_006402815.1| - 0.027 14.6 2.4 5.1 7.3 1.4 2.9 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF2408 PF10303.4 gi|390939077|ref|YP_006402815.1| - 0.029 14.4 5.8 1.1 9.4 2.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) Sec34 PF04136.10 gi|390939077|ref|YP_006402815.1| - 0.03 14.0 5.6 0.69 9.6 0.5 3.0 1 1 2 3 3 3 0 Sec34-like family CENP-F_leu_zip PF10473.4 gi|390939077|ref|YP_006402815.1| - 0.031 14.1 0.1 0.055 13.3 0.1 1.4 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.4 gi|390939077|ref|YP_006402815.1| - 0.031 13.2 0.7 0.087 11.7 0.2 1.7 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Arfaptin PF06456.8 gi|390939077|ref|YP_006402815.1| - 0.035 13.4 3.4 0.041 13.2 0.8 1.8 1 1 1 2 2 2 0 Arfaptin-like domain ALIX_LYPXL_bnd PF13949.1 gi|390939077|ref|YP_006402815.1| - 0.039 12.9 6.1 0.12 11.3 4.2 1.7 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV DUF869 PF05911.6 gi|390939077|ref|YP_006402815.1| - 0.039 12.1 6.9 0.053 11.7 4.8 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Syntaxin PF00804.20 gi|390939077|ref|YP_006402815.1| - 0.04 14.0 9.2 4.8 7.4 6.4 2.6 1 1 0 1 1 1 0 Syntaxin MscS_porin PF12795.2 gi|390939077|ref|YP_006402815.1| - 0.051 12.8 1.1 0.09 12.0 0.8 1.4 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Sec3_C PF09763.4 gi|390939077|ref|YP_006402815.1| - 0.053 11.6 5.8 0.17 9.9 0.7 2.6 2 1 1 3 3 3 0 Exocyst complex component Sec3 YlbD_coat PF14071.1 gi|390939077|ref|YP_006402815.1| - 0.054 13.5 12.6 0.067 13.2 1.3 3.3 1 1 1 2 2 1 0 Putative coat protein Tropomyosin_1 PF12718.2 gi|390939077|ref|YP_006402815.1| - 0.066 13.0 0.1 0.21 11.4 0.1 1.6 1 1 0 1 1 1 0 Tropomyosin like GrpE PF01025.14 gi|390939077|ref|YP_006402815.1| - 0.087 12.3 1.6 1.4 8.4 0.1 2.2 1 1 1 2 2 2 0 GrpE TPR_MLP1_2 PF07926.7 gi|390939077|ref|YP_006402815.1| - 0.097 12.4 1.2 0.33 10.7 0.8 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Laminin_I PF06008.9 gi|390939077|ref|YP_006402815.1| - 0.14 11.4 7.5 0.36 10.0 4.3 1.8 1 1 0 1 1 1 0 Laminin Domain I Apc4 PF12896.2 gi|390939077|ref|YP_006402815.1| - 0.14 11.4 0.2 9 5.5 0.1 2.7 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 4 LOH1CR12 PF10158.4 gi|390939077|ref|YP_006402815.1| - 0.16 11.7 5.9 0.69 9.7 0.7 2.3 1 1 1 2 2 2 0 Tumour suppressor protein Cluap1 PF10234.4 gi|390939077|ref|YP_006402815.1| - 0.16 11.1 4.5 0.27 10.3 3.1 1.3 1 0 0 1 1 1 0 Clusterin-associated protein-1 DUF4631 PF15450.1 gi|390939077|ref|YP_006402815.1| - 0.16 10.1 0.1 0.25 9.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4631) APG17 PF04108.7 gi|390939077|ref|YP_006402815.1| - 0.17 10.6 8.2 0.42 9.3 0.3 2.2 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF972 PF06156.8 gi|390939077|ref|YP_006402815.1| - 0.18 12.1 1.1 1.7 8.9 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Tropomyosin PF00261.15 gi|390939077|ref|YP_006402815.1| - 0.23 10.5 0.0 0.48 9.4 0.0 1.5 1 1 0 1 1 1 0 Tropomyosin MtrB PF05440.7 gi|390939077|ref|YP_006402815.1| - 0.29 11.2 6.4 12 5.9 0.1 3.8 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B Med4 PF10018.4 gi|390939077|ref|YP_006402815.1| - 0.29 10.5 0.9 1.9 7.8 0.2 2.1 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 AAA_27 PF13514.1 gi|390939077|ref|YP_006402815.1| - 0.31 8.6 0.1 0.54 7.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain HAUS-augmin3 PF14932.1 gi|390939077|ref|YP_006402815.1| - 0.39 9.8 3.7 0.5 9.5 2.0 1.4 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 Cast PF10174.4 gi|390939077|ref|YP_006402815.1| - 0.53 8.2 0.0 0.69 7.8 0.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Filament PF00038.16 gi|390939077|ref|YP_006402815.1| - 0.6 9.5 1.1 2.8 7.3 0.5 1.7 1 1 1 2 2 2 0 Intermediate filament protein DHC_N2 PF08393.8 gi|390939077|ref|YP_006402815.1| - 0.64 8.4 4.7 1.6 7.1 3.2 1.4 1 1 0 1 1 1 0 Dynein heavy chain, N-terminal region 2 Gp58 PF07902.6 gi|390939077|ref|YP_006402815.1| - 0.69 8.0 25.5 1.1 7.4 3.0 2.3 1 1 1 2 2 2 0 gp58-like protein LXG PF04740.7 gi|390939077|ref|YP_006402815.1| - 0.75 9.5 9.5 1.8 8.3 3.1 2.4 1 1 0 2 2 2 0 LXG domain of WXG superfamily BAR_2 PF10455.4 gi|390939077|ref|YP_006402815.1| - 0.92 8.3 8.6 1.5 7.7 5.9 1.2 1 0 0 1 1 1 0 Bin/amphiphysin/Rvs domain for vesicular trafficking DUF2580 PF10824.3 gi|390939077|ref|YP_006402815.1| - 0.93 9.8 9.2 2.9 8.3 0.1 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2580) Syntaxin-6_N PF09177.6 gi|390939077|ref|YP_006402815.1| - 1.2 9.5 8.3 2.9 8.3 3.1 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Allexi_40kDa PF05549.6 gi|390939077|ref|YP_006402815.1| - 1.5 8.0 17.8 1.4 8.1 6.9 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein Vps5 PF09325.5 gi|390939077|ref|YP_006402815.1| - 1.5 7.9 6.2 2.2 7.4 4.0 1.4 1 1 0 1 1 1 0 Vps5 C terminal like AIP3 PF03915.8 gi|390939077|ref|YP_006402815.1| - 1.6 7.5 13.4 2.4 6.9 9.3 1.2 1 0 0 1 1 1 0 Actin interacting protein 3 Fib_alpha PF08702.5 gi|390939077|ref|YP_006402815.1| - 2 8.5 13.4 2.5 8.1 2.4 2.5 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family LUC7 PF03194.10 gi|390939077|ref|YP_006402815.1| - 2.3 7.6 3.7 8.1 5.8 0.7 2.0 1 1 1 2 2 2 0 LUC7 N_terminus AATF-Che1 PF13339.1 gi|390939077|ref|YP_006402815.1| - 2.7 8.1 5.4 11 6.1 2.4 2.3 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Cauli_DNA-bind PF03310.8 gi|390939077|ref|YP_006402815.1| - 3 7.7 10.7 6.5 6.6 0.8 2.5 1 1 1 2 2 2 0 Caulimovirus DNA-binding protein ISG65-75 PF11727.3 gi|390939077|ref|YP_006402815.1| - 3.4 6.6 8.4 2.5 7.0 2.3 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein ADIP PF11559.3 gi|390939077|ref|YP_006402815.1| - 4.1 7.2 5.9 8.5 6.2 4.1 1.6 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF745 PF05335.8 gi|390939077|ref|YP_006402815.1| - 5.9 6.3 13.6 3.8 6.9 5.1 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF745) DUF1395 PF07160.7 gi|390939077|ref|YP_006402815.1| - 6.9 6.0 9.4 3.1 7.2 1.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1395) Peptidase_S8 PF00082.17 gi|390939078|ref|YP_006402816.1| - 1e-36 126.5 0.1 1.9e-36 125.6 0.1 1.5 1 0 0 1 1 1 1 Subtilase family RHH_1 PF01402.16 gi|390939080|ref|YP_006402818.1| - 4.6e-06 26.3 0.3 1.2e-05 24.9 0.2 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|390939080|ref|YP_006402818.1| - 0.034 13.8 0.2 0.12 12.1 0.1 1.9 1 1 0 1 1 1 0 Ribbon-helix-helix domain NaeI PF09126.5 gi|390939080|ref|YP_006402818.1| - 0.068 11.8 0.0 0.09 11.3 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease NaeI Proteasome PF00227.21 gi|390939081|ref|YP_006402819.1| - 8.5e-54 181.7 0.0 9.5e-54 181.5 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit PIN PF01850.16 gi|390939082|ref|YP_006402820.1| - 2.4e-06 27.8 1.1 3.2e-06 27.4 0.8 1.2 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.1 gi|390939082|ref|YP_006402820.1| - 0.089 12.4 0.2 0.17 11.5 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) LEM PF03020.10 gi|390939083|ref|YP_006402821.1| - 0.0034 16.8 0.5 0.0088 15.4 0.0 1.8 2 0 0 2 2 2 1 LEM domain RHH_1 PF01402.16 gi|390939083|ref|YP_006402821.1| - 0.017 14.9 1.4 0.072 13.0 0.0 2.4 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family YpjP PF14005.1 gi|390939083|ref|YP_006402821.1| - 0.023 14.4 0.1 0.026 14.3 0.0 1.1 1 0 0 1 1 1 0 YpjP-like protein Rad50_zn_hook PF04423.9 gi|390939083|ref|YP_006402821.1| - 0.13 11.7 1.6 0.42 10.1 0.3 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif EamA PF00892.15 gi|390939084|ref|YP_006402822.1| - 1.6e-31 108.9 30.7 3.3e-21 75.6 7.2 2.4 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|390939084|ref|YP_006402822.1| - 9.4e-05 22.5 27.7 0.002 18.3 6.0 3.4 1 1 0 2 2 2 2 Multidrug resistance efflux transporter DUF4500 PF14937.1 gi|390939084|ref|YP_006402822.1| - 0.15 11.8 1.1 0.29 10.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4500) TPT PF03151.11 gi|390939084|ref|YP_006402822.1| - 0.45 10.1 22.7 0.66 9.6 5.2 4.4 2 2 2 4 4 4 0 Triose-phosphate Transporter family UAA PF08449.6 gi|390939084|ref|YP_006402822.1| - 4.3 6.1 18.6 0.19 10.6 5.3 2.2 1 1 1 2 2 2 0 UAA transporter family MMR_HSR1 PF01926.18 gi|390939085|ref|YP_006402823.1| - 1.7e-19 69.9 0.2 5.5e-19 68.2 0.0 1.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|390939085|ref|YP_006402823.1| - 1.2e-15 57.1 0.3 2e-15 56.3 0.2 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|390939085|ref|YP_006402823.1| - 1.3e-10 40.7 0.0 2.5e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|390939085|ref|YP_006402823.1| - 9.3e-07 29.3 0.0 1.7e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|390939085|ref|YP_006402823.1| - 1.2e-05 24.8 0.3 0.0022 17.4 0.1 2.8 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|390939085|ref|YP_006402823.1| - 6.7e-05 22.7 0.8 0.014 15.2 0.0 2.4 2 0 0 2 2 2 1 Dynamin family Ras PF00071.17 gi|390939085|ref|YP_006402823.1| - 0.0046 16.3 0.1 0.055 12.8 0.0 2.2 1 1 0 1 1 1 1 Ras family ArgK PF03308.11 gi|390939085|ref|YP_006402823.1| - 0.014 14.2 0.0 0.026 13.2 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_14 PF13173.1 gi|390939085|ref|YP_006402823.1| - 0.019 14.8 0.2 0.078 12.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|390939085|ref|YP_006402823.1| - 0.033 15.0 1.2 0.12 13.1 0.1 2.3 2 2 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|390939085|ref|YP_006402823.1| - 0.035 13.3 0.0 0.061 12.5 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit NTPase_1 PF03266.10 gi|390939085|ref|YP_006402823.1| - 0.043 13.5 0.8 0.14 11.8 0.1 2.1 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.1 gi|390939085|ref|YP_006402823.1| - 0.047 13.6 0.1 0.24 11.3 0.0 2.2 3 0 0 3 3 3 0 AAA domain cobW PF02492.14 gi|390939085|ref|YP_006402823.1| - 0.053 12.9 1.0 3.1 7.1 0.0 2.6 2 1 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|390939085|ref|YP_006402823.1| - 0.064 12.4 0.0 11 5.1 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|390939085|ref|YP_006402823.1| - 0.11 11.7 0.1 0.55 9.3 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|390939085|ref|YP_006402823.1| - 0.12 12.7 0.2 0.32 11.2 0.1 2.0 2 1 0 2 2 2 0 AAA domain Exo70 PF03081.10 gi|390939085|ref|YP_006402823.1| - 0.15 10.8 0.0 0.25 10.0 0.0 1.3 1 0 0 1 1 1 0 Exo70 exocyst complex subunit RTC PF01137.16 gi|390939086|ref|YP_006402824.1| - 1.1e-81 273.0 0.0 1.2e-81 272.8 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|390939086|ref|YP_006402824.1| - 3.4e-26 91.2 0.0 5.8e-26 90.4 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_2 PF01467.21 gi|390939087|ref|YP_006402825.1| - 1e-12 48.3 0.0 1.3e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase HIGH_NTase1 PF05636.6 gi|390939087|ref|YP_006402825.1| - 0.072 12.1 0.0 3.7 6.4 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Beta-Casp PF10996.3 gi|390939088|ref|YP_006402826.1| - 5.7e-32 110.3 0.0 1.3e-31 109.1 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|390939088|ref|YP_006402826.1| - 1.7e-21 76.7 0.7 3.2e-21 75.8 0.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|390939088|ref|YP_006402826.1| - 6.7e-14 51.4 0.0 2.5e-13 49.6 0.0 2.1 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|390939088|ref|YP_006402826.1| - 1.7e-10 40.7 0.0 3.5e-09 36.4 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|390939088|ref|YP_006402826.1| - 0.0094 15.6 0.0 0.036 13.7 0.0 2.1 2 1 0 2 2 2 1 Beta-lactamase superfamily domain DUF4365 PF14280.1 gi|390939088|ref|YP_006402826.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4365) Proteasome PF00227.21 gi|390939089|ref|YP_006402827.1| - 3.8e-52 176.3 0.6 4.4e-52 176.1 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF1899 PF08953.6 gi|390939089|ref|YP_006402827.1| - 0.035 13.7 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1899) Fe-ADH_2 PF13685.1 gi|390939090|ref|YP_006402828.1| - 4e-70 235.9 0.1 4.8e-70 235.7 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|390939090|ref|YP_006402828.1| - 1.5e-23 83.0 0.8 5.1e-23 81.3 0.6 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|390939090|ref|YP_006402828.1| - 1.9e-08 33.5 0.0 6.2e-05 22.0 0.0 2.9 2 1 0 2 2 2 2 3-dehydroquinate synthase UPF0146 PF03686.8 gi|390939090|ref|YP_006402828.1| - 0.062 13.1 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) UBA PF00627.26 gi|390939090|ref|YP_006402828.1| - 0.15 11.9 0.0 0.79 9.6 0.0 2.2 3 0 0 3 3 3 0 UBA/TS-N domain FKBP_C PF00254.23 gi|390939091|ref|YP_006402829.1| - 2.4e-10 40.3 0.0 8e-10 38.6 0.0 1.9 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF3553 PF12073.3 gi|390939091|ref|YP_006402829.1| - 0.072 12.4 0.1 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) MS_channel PF00924.13 gi|390939091|ref|YP_006402829.1| - 0.078 12.2 1.6 0.12 11.6 0.3 1.9 2 1 1 3 3 3 0 Mechanosensitive ion channel AphA_like PF14557.1 gi|390939091|ref|YP_006402829.1| - 0.08 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator PUA PF01472.15 gi|390939092|ref|YP_006402830.1| - 3.6e-20 71.4 1.9 4.7e-20 71.0 1.3 1.2 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.5 gi|390939092|ref|YP_006402830.1| - 0.0012 18.5 0.1 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Toprim_4 PF13662.1 gi|390939093|ref|YP_006402831.1| - 4.9e-08 32.8 0.2 1.2e-07 31.5 0.1 1.7 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|390939093|ref|YP_006402831.1| - 5.7e-05 23.0 0.1 0.00042 20.2 0.0 2.4 2 0 0 2 2 2 1 Toprim domain Rota_NSP4 PF01452.11 gi|390939093|ref|YP_006402831.1| - 6.4 6.0 7.6 0.23 10.7 0.2 2.1 2 1 0 2 2 2 0 Rotavirus non structural protein AKAP7_RIRII_bdg PF10470.4 gi|390939093|ref|YP_006402831.1| - 7.6 6.4 6.8 1.6 8.6 0.7 2.7 3 0 0 3 3 3 0 PKA-RI-RII subunit binding domain of A-kinase anchor protein Ribosomal_L37e PF01907.14 gi|390939094|ref|YP_006402832.1| - 1.7e-25 88.5 11.9 1.9e-25 88.4 8.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|390939094|ref|YP_006402832.1| - 0.015 15.1 0.8 0.018 14.8 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon Stc1 PF12898.2 gi|390939094|ref|YP_006402832.1| - 0.031 14.3 0.4 0.035 14.1 0.3 1.2 1 0 0 1 1 1 0 Stc1 domain GCC2_GCC3 PF07699.8 gi|390939094|ref|YP_006402832.1| - 0.046 13.3 0.6 0.061 12.9 0.4 1.3 1 0 0 1 1 1 0 GCC2 and GCC3 DNA_RNApol_7kD PF03604.8 gi|390939094|ref|YP_006402832.1| - 1.1 8.7 7.0 0.31 10.5 0.7 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-FPG_IleRS PF06827.9 gi|390939094|ref|YP_006402832.1| - 2.4 7.8 7.2 3.3 7.4 3.1 2.3 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS LSM PF01423.17 gi|390939095|ref|YP_006402833.1| - 1.4e-21 75.7 0.4 1.6e-21 75.5 0.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|390939095|ref|YP_006402833.1| - 0.018 14.9 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain DNA_pol_B PF00136.16 gi|390939096|ref|YP_006402834.1| - 3e-99 332.9 0.0 4e-99 332.4 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|390939096|ref|YP_006402834.1| - 5.4e-39 133.9 0.3 3.3e-38 131.3 0.2 2.0 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|390939096|ref|YP_006402834.1| - 8.6e-12 45.1 0.0 2e-11 43.9 0.0 1.7 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|390939096|ref|YP_006402834.1| - 9.5e-07 28.5 0.0 1.8e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB eRF1_1 PF03463.10 gi|390939097|ref|YP_006402835.1| - 6.2e-24 84.0 0.0 1.2e-23 83.0 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|390939097|ref|YP_006402835.1| - 3.1e-21 76.0 0.1 1.1e-20 74.3 0.0 2.0 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|390939097|ref|YP_006402835.1| - 3.4e-19 69.1 0.1 8.7e-19 67.8 0.1 1.7 1 0 0 1 1 1 1 eRF1 domain 3 NTP_transf_2 PF01909.18 gi|390939098|ref|YP_006402836.1| - 9.4e-07 29.0 0.5 3e-06 27.4 0.4 2.0 1 1 0 1 1 1 1 Nucleotidyltransferase domain MA-Mit PF09245.5 gi|390939098|ref|YP_006402836.1| - 0.059 12.6 0.0 0.13 11.4 0.0 1.5 2 0 0 2 2 2 0 Mycoplasma arthritidis-derived mitogen Peptidase_M50 PF02163.17 gi|390939099|ref|YP_006402837.1| - 6.1e-22 77.5 0.7 6.1e-22 77.5 0.5 2.9 2 2 0 2 2 2 1 Peptidase family M50 PDZ PF00595.19 gi|390939099|ref|YP_006402837.1| - 5.5e-08 32.8 0.0 1.3e-07 31.7 0.0 1.7 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) PDZ_2 PF13180.1 gi|390939099|ref|YP_006402837.1| - 5.6e-07 29.3 0.0 1.1e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PALP PF00291.20 gi|390939100|ref|YP_006402838.1| - 9.6e-67 225.3 0.0 1.1e-66 225.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.1 gi|390939100|ref|YP_006402838.1| - 0.0096 15.1 0.8 1.2 8.4 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-ISL3 PF14690.1 gi|390939100|ref|YP_006402838.1| - 0.041 13.9 0.8 0.69 9.9 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Mu-like_Com PF10122.4 gi|390939100|ref|YP_006402838.1| - 0.17 10.9 0.4 0.32 10.1 0.3 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com Rubredoxin PF00301.15 gi|390939100|ref|YP_006402838.1| - 0.33 10.8 5.1 1.4 8.8 0.4 2.6 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.6 gi|390939100|ref|YP_006402838.1| - 0.5 10.0 2.5 3.7 7.2 2.1 2.1 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-HIT PF04438.11 gi|390939100|ref|YP_006402838.1| - 0.51 10.0 2.3 1.3 8.6 1.6 1.6 1 1 0 1 1 1 0 HIT zinc finger zinc_ribbon_2 PF13240.1 gi|390939100|ref|YP_006402838.1| - 1.6 8.2 6.5 6.4 6.4 4.6 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|390939100|ref|YP_006402838.1| - 1.7 7.8 4.5 3.3 6.8 0.3 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others UPF0547 PF10571.4 gi|390939100|ref|YP_006402838.1| - 5.9 6.6 6.3 17 5.2 0.9 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2296 PF10058.4 gi|390939100|ref|YP_006402838.1| - 8.8 6.1 5.8 40 4.0 3.7 2.1 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Ribosomal_S26e PF01283.14 gi|390939101|ref|YP_006402839.1| - 2.7e-31 108.1 2.8 2.9e-31 108.0 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e DZR PF12773.2 gi|390939101|ref|YP_006402839.1| - 0.012 15.3 1.4 0.15 11.8 0.1 2.1 2 0 0 2 2 2 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|390939101|ref|YP_006402839.1| - 0.15 11.8 0.6 0.15 11.8 0.4 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger PIN PF01850.16 gi|390939102|ref|YP_006402840.1| - 9.8e-14 51.7 2.2 1.8e-13 50.8 1.5 1.5 1 1 0 1 1 1 1 PIN domain RHH_1 PF01402.16 gi|390939103|ref|YP_006402841.1| - 4.3e-06 26.3 1.6 4.4e-06 26.3 0.1 1.8 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|390939103|ref|YP_006402841.1| - 0.05 13.7 0.3 0.071 13.2 0.2 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0156) SBP_bac_5 PF00496.17 gi|390939104|ref|YP_006402842.1| - 0.076 11.8 0.0 0.48 9.1 0.0 1.9 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_18 PF12847.2 gi|390939105|ref|YP_006402843.1| - 2.1e-09 37.9 0.0 2.8e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|390939105|ref|YP_006402843.1| - 2.7e-08 33.5 0.0 3.3e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|390939105|ref|YP_006402843.1| - 1.8e-07 31.2 0.0 2.1e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|390939105|ref|YP_006402843.1| - 7.7e-07 29.4 0.0 9.8e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|390939105|ref|YP_006402843.1| - 2.7e-06 26.8 0.1 1.4e-05 24.5 0.0 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_4 PF02390.12 gi|390939105|ref|YP_006402843.1| - 3e-06 26.4 0.0 3.9e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|390939105|ref|YP_006402843.1| - 1.6e-05 24.1 0.0 1.7e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|390939105|ref|YP_006402843.1| - 0.0001 21.5 0.0 0.00012 21.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|390939105|ref|YP_006402843.1| - 0.00013 21.3 0.0 0.00014 21.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.7 gi|390939105|ref|YP_006402843.1| - 0.00016 22.0 0.0 0.00022 21.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|390939105|ref|YP_006402843.1| - 0.0033 16.8 0.0 0.0045 16.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|390939105|ref|YP_006402843.1| - 0.0037 16.8 0.0 0.0055 16.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|390939105|ref|YP_006402843.1| - 0.0049 16.4 0.0 0.0057 16.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF633 PF04816.7 gi|390939105|ref|YP_006402843.1| - 0.026 13.8 0.0 0.11 11.8 0.0 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF633) Methyltransf_12 PF08242.7 gi|390939105|ref|YP_006402843.1| - 0.038 14.4 0.1 0.075 13.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|390939105|ref|YP_006402843.1| - 0.062 12.4 0.0 0.076 12.1 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_20 PF12147.3 gi|390939105|ref|YP_006402843.1| - 0.066 12.0 0.1 0.079 11.8 0.1 1.1 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_15 PF09445.5 gi|390939105|ref|YP_006402843.1| - 0.066 12.7 0.0 0.066 12.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.1 gi|390939105|ref|YP_006402843.1| - 0.095 12.4 0.0 0.098 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.5 gi|390939106|ref|YP_006402844.1| - 3.5e-33 115.1 0.0 8.2e-30 104.0 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|390939106|ref|YP_006402844.1| - 2.7e-09 36.8 0.0 3.5e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|390939106|ref|YP_006402844.1| - 2e-06 28.3 0.0 3.3e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|390939106|ref|YP_006402844.1| - 9.3e-06 25.3 0.0 1.8e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|390939106|ref|YP_006402844.1| - 1.8e-05 23.9 0.0 2.6e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.1 gi|390939106|ref|YP_006402844.1| - 0.0002 22.1 0.0 0.00044 21.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|390939106|ref|YP_006402844.1| - 0.00084 19.3 0.0 0.0014 18.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|390939106|ref|YP_006402844.1| - 0.0022 18.4 0.0 0.0066 16.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|390939106|ref|YP_006402844.1| - 0.0026 18.2 0.0 0.0053 17.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|390939106|ref|YP_006402844.1| - 0.0046 16.5 0.0 0.0097 15.4 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|390939106|ref|YP_006402844.1| - 0.0089 16.3 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain rRNA_methylase PF06962.7 gi|390939106|ref|YP_006402844.1| - 0.014 15.1 0.0 0.031 13.9 0.0 1.6 1 0 0 1 1 1 0 Putative rRNA methylase Gcd10p PF04189.8 gi|390939106|ref|YP_006402844.1| - 0.018 14.1 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 Gcd10p family Methyltransf_4 PF02390.12 gi|390939106|ref|YP_006402844.1| - 0.034 13.1 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Fibrillarin PF01269.12 gi|390939106|ref|YP_006402844.1| - 0.056 12.3 0.0 0.085 11.7 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin RHH_1 PF01402.16 gi|390939108|ref|YP_006402846.1| - 8.9e-07 28.5 0.1 1.2e-06 28.1 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|390939108|ref|YP_006402846.1| - 0.00015 21.8 0.1 0.00015 21.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|390939108|ref|YP_006402846.1| - 0.1 12.4 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) PMT_2 PF13231.1 gi|390939109|ref|YP_006402847.1| - 5.6e-13 49.0 14.2 5.6e-13 49.0 9.9 2.9 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|390939109|ref|YP_006402847.1| - 2.2e-07 30.5 19.9 6.6e-07 28.9 11.7 3.6 2 2 1 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1469 PF07332.6 gi|390939109|ref|YP_006402847.1| - 0.021 14.5 0.3 0.021 14.5 0.2 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF1469) TauE PF01925.14 gi|390939109|ref|YP_006402847.1| - 6.1 6.2 26.0 0.009 15.4 8.2 2.6 3 0 0 3 3 3 0 Sulfite exporter TauE/SafE DUF2545 PF10810.3 gi|390939110|ref|YP_006402848.1| - 0.023 15.0 1.0 0.023 15.0 0.7 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2545) DNA_pol_B PF00136.16 gi|390939111|ref|YP_006402849.1| - 2e-79 267.5 0.0 4.3e-79 266.4 0.0 1.5 2 0 0 2 2 2 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|390939111|ref|YP_006402849.1| - 1.6e-28 99.5 0.2 2.8e-28 98.7 0.1 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|390939111|ref|YP_006402849.1| - 1.6e-05 24.7 0.0 0.00019 21.2 0.0 2.8 3 0 0 3 3 3 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|390939111|ref|YP_006402849.1| - 0.023 14.2 0.0 0.059 12.8 0.0 1.7 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB NAC PF01849.13 gi|390939112|ref|YP_006402850.1| - 6.6e-13 47.9 2.9 1.4e-12 46.9 0.3 2.1 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|390939112|ref|YP_006402850.1| - 2.8e-06 26.9 0.1 1e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 UBA/TS-N domain Clp_N PF02861.15 gi|390939112|ref|YP_006402850.1| - 0.0018 18.1 0.0 1.4 8.9 0.0 2.6 3 0 0 3 3 3 2 Clp amino terminal domain RTC4 PF14474.1 gi|390939112|ref|YP_006402850.1| - 0.038 13.9 0.0 0.053 13.4 0.0 1.3 1 0 0 1 1 1 0 RTC4-like domain HECT_2 PF09814.4 gi|390939112|ref|YP_006402850.1| - 0.12 11.0 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Beta-Casp PF10996.3 gi|390939113|ref|YP_006402851.1| - 5.5e-27 94.1 0.0 9.7e-27 93.3 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|390939113|ref|YP_006402851.1| - 1e-13 51.4 0.5 2e-13 50.4 0.4 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|390939113|ref|YP_006402851.1| - 1.2e-11 44.1 0.0 3e-11 42.9 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|390939113|ref|YP_006402851.1| - 3.9e-07 29.7 0.0 8e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|390939113|ref|YP_006402851.1| - 0.0076 15.9 0.0 0.02 14.5 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|390939113|ref|YP_006402851.1| - 0.17 10.7 0.2 0.27 10.0 0.1 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II GTP_EFTU PF00009.22 gi|390939114|ref|YP_006402852.1| - 1e-56 191.3 0.2 1.9e-56 190.4 0.2 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|390939114|ref|YP_006402852.1| - 3e-34 117.1 0.1 1.9e-33 114.5 0.0 2.4 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|390939114|ref|YP_006402852.1| - 7.4e-21 73.8 0.0 2.6e-20 72.0 0.0 2.0 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|390939114|ref|YP_006402852.1| - 9.3e-21 73.4 0.1 2.2e-20 72.2 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|390939114|ref|YP_006402852.1| - 8.3e-13 48.2 0.0 2.4e-12 46.8 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|390939114|ref|YP_006402852.1| - 1.6e-05 24.8 0.0 3.8e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|390939114|ref|YP_006402852.1| - 0.029 13.5 0.0 0.066 12.4 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|390939114|ref|YP_006402852.1| - 0.076 12.4 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Ras family DUF1953 PF09196.5 gi|390939115|ref|YP_006402853.1| - 0.0074 15.9 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1953) DUF234 PF03008.9 gi|390939115|ref|YP_006402853.1| - 0.09 12.9 0.2 0.72 10.0 0.0 2.0 2 0 0 2 2 2 0 Archaea bacterial proteins of unknown function Sec3_C_2 PF15278.1 gi|390939115|ref|YP_006402853.1| - 0.09 12.9 0.0 0.18 11.9 0.0 1.5 1 1 0 1 1 1 0 Sec3 exocyst complex subunit Prefoldin_2 PF01920.15 gi|390939116|ref|YP_006402854.1| - 5.3e-19 67.9 14.5 6e-19 67.7 10.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.12 gi|390939116|ref|YP_006402854.1| - 0.0011 18.5 7.8 0.28 10.8 0.1 2.2 1 1 1 2 2 2 2 Prefoldin subunit DASH_Dad3 PF08656.5 gi|390939116|ref|YP_006402854.1| - 0.0022 17.6 3.0 0.031 13.9 0.4 2.3 2 0 0 2 2 2 1 DASH complex subunit Dad3 FlaC_arch PF05377.6 gi|390939116|ref|YP_006402854.1| - 0.0038 17.0 10.2 0.35 10.8 2.5 2.3 2 0 0 2 2 2 2 Flagella accessory protein C (FlaC) DUF3584 PF12128.3 gi|390939116|ref|YP_006402854.1| - 0.0049 14.2 5.3 0.0057 14.0 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) STAT_alpha PF01017.15 gi|390939116|ref|YP_006402854.1| - 0.0085 15.8 5.6 0.16 11.6 3.9 2.0 1 1 0 1 1 1 1 STAT protein, all-alpha domain TMF_DNA_bd PF12329.3 gi|390939116|ref|YP_006402854.1| - 0.0085 15.8 11.8 0.17 11.6 4.6 2.1 2 0 0 2 2 2 1 TATA element modulatory factor 1 DNA binding AAA_27 PF13514.1 gi|390939116|ref|YP_006402854.1| - 0.019 12.7 5.7 0.022 12.4 3.9 1.0 1 0 0 1 1 1 0 AAA domain Vps8 PF12816.2 gi|390939116|ref|YP_006402854.1| - 0.023 13.9 0.2 0.024 13.8 0.1 1.2 1 0 0 1 1 1 0 Golgi CORVET complex core vacuolar protein 8 DUF4140 PF13600.1 gi|390939116|ref|YP_006402854.1| - 0.036 14.5 6.9 0.12 12.8 0.3 2.4 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) SIR2_2 PF13289.1 gi|390939116|ref|YP_006402854.1| - 0.039 13.8 0.1 0.045 13.6 0.1 1.1 1 0 0 1 1 1 0 SIR2-like domain Sipho_Gp157 PF05565.6 gi|390939116|ref|YP_006402854.1| - 0.041 13.4 6.4 0.063 12.8 4.4 1.3 1 0 0 1 1 1 0 Siphovirus Gp157 PP-binding_2 PF14573.1 gi|390939116|ref|YP_006402854.1| - 0.052 13.5 0.9 0.092 12.7 0.6 1.4 1 1 0 1 1 1 0 Acyl-carrier Dynamitin PF04912.9 gi|390939116|ref|YP_006402854.1| - 0.084 11.6 9.8 0.061 12.1 2.5 2.0 1 1 1 2 2 2 0 Dynamitin MbeB_N PF04837.7 gi|390939116|ref|YP_006402854.1| - 0.089 12.8 1.7 9.6 6.3 0.2 2.5 2 0 0 2 2 2 0 MbeB-like, N-term conserved region Snapin_Pallidin PF14712.1 gi|390939116|ref|YP_006402854.1| - 0.11 12.7 10.6 1.2 9.5 1.7 2.1 1 1 1 2 2 2 0 Snapin/Pallidin Orbi_VP3 PF01700.11 gi|390939116|ref|YP_006402854.1| - 0.12 9.8 1.7 0.12 9.7 1.2 1.1 1 0 0 1 1 1 0 Orbivirus VP3 (T2) protein DUF2802 PF10975.3 gi|390939116|ref|YP_006402854.1| - 0.12 12.1 1.4 13 5.5 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2802) RtcB PF01139.12 gi|390939116|ref|YP_006402854.1| - 0.15 11.0 1.7 0.18 10.7 1.2 1.1 1 0 0 1 1 1 0 tRNA-splicing ligase RtcB Glu-tRNAGln PF02686.10 gi|390939116|ref|YP_006402854.1| - 0.17 11.7 1.8 0.23 11.3 0.8 1.6 1 1 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit TRF PF08558.5 gi|390939116|ref|YP_006402854.1| - 0.18 11.1 3.1 0.2 10.9 2.1 1.1 1 0 0 1 1 1 0 Telomere repeat binding factor (TRF) Nsp1_C PF05064.8 gi|390939116|ref|YP_006402854.1| - 0.2 11.2 10.6 0.11 12.1 1.4 2.2 1 1 1 2 2 2 0 Nsp1-like C-terminal region Spc7 PF08317.6 gi|390939116|ref|YP_006402854.1| - 0.21 10.2 9.6 0.26 9.8 6.7 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4164 PF13747.1 gi|390939116|ref|YP_006402854.1| - 0.31 11.1 7.5 0.77 9.9 0.3 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) Suppressor_APC PF11414.3 gi|390939116|ref|YP_006402854.1| - 0.38 10.5 6.8 0.087 12.6 1.6 1.9 2 0 0 2 2 2 0 Adenomatous polyposis coli tumour suppressor protein FbpA PF05833.6 gi|390939116|ref|YP_006402854.1| - 0.42 9.1 10.0 0.087 11.3 0.4 2.0 1 1 1 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) Cortex-I_coil PF09304.5 gi|390939116|ref|YP_006402854.1| - 0.57 10.2 11.9 2.7 8.0 2.0 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil MerR-DNA-bind PF09278.6 gi|390939116|ref|YP_006402854.1| - 0.58 10.6 6.8 4.5 7.7 0.8 2.2 2 0 0 2 2 2 0 MerR, DNA binding DUF1465 PF07323.7 gi|390939116|ref|YP_006402854.1| - 0.59 9.6 5.4 1.2 8.6 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) Med4 PF10018.4 gi|390939116|ref|YP_006402854.1| - 0.72 9.2 8.5 0.88 8.9 1.4 2.1 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 End3 PF12761.2 gi|390939116|ref|YP_006402854.1| - 0.75 9.4 8.2 1 8.9 5.7 1.3 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Seryl_tRNA_N PF02403.17 gi|390939116|ref|YP_006402854.1| - 0.98 9.4 10.0 11 6.0 3.0 2.4 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain bZIP_1 PF00170.16 gi|390939116|ref|YP_006402854.1| - 1.6 8.7 12.3 0.45 10.5 4.6 2.3 2 1 0 2 2 2 0 bZIP transcription factor GreA_GreB_N PF03449.10 gi|390939116|ref|YP_006402854.1| - 2.3 8.3 8.4 7.1 6.7 0.3 2.7 2 1 0 2 2 2 0 Transcription elongation factor, N-terminal Osmo_CC PF08946.5 gi|390939116|ref|YP_006402854.1| - 2.9 8.0 7.5 0.9 9.6 3.0 1.8 2 0 0 2 2 1 0 Osmosensory transporter coiled coil TPR_MLP1_2 PF07926.7 gi|390939116|ref|YP_006402854.1| - 3.2 7.4 10.2 15 5.3 7.1 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Spc24 PF08286.6 gi|390939116|ref|YP_006402854.1| - 4.8 6.9 9.2 14 5.3 2.0 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 IncA PF04156.9 gi|390939116|ref|YP_006402854.1| - 5.5 6.5 9.6 8.1 5.9 1.9 2.0 2 0 0 2 2 2 0 IncA protein AAA_23 PF13476.1 gi|390939116|ref|YP_006402854.1| - 7.4 6.8 8.4 11 6.2 5.8 1.3 1 1 0 1 1 1 0 AAA domain DUF972 PF06156.8 gi|390939116|ref|YP_006402854.1| - 7.4 6.9 8.2 15 5.9 1.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) NEMO PF11577.3 gi|390939116|ref|YP_006402854.1| - 8.6 6.2 9.9 3.8 7.3 4.1 2.1 2 0 0 2 2 2 0 NF-kappa-B essential modulator NEMO Pcc1 PF09341.5 gi|390939117|ref|YP_006402855.1| - 1e-05 25.4 0.1 1.2e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.13 gi|390939118|ref|YP_006402856.1| - 3.6e-16 59.3 0.0 4.5e-16 59.0 0.0 1.3 1 1 0 1 1 1 1 Brix domain Ribosomal_L37ae PF01780.14 gi|390939119|ref|YP_006402857.1| - 7.2e-32 109.1 2.3 7.6e-32 109.0 1.6 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|390939119|ref|YP_006402857.1| - 4.2e-08 32.8 2.3 6e-08 32.3 1.6 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|390939119|ref|YP_006402857.1| - 1.2e-06 28.1 0.5 1.6e-06 27.6 0.4 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|390939119|ref|YP_006402857.1| - 0.0041 17.3 2.4 0.0085 16.3 1.7 1.5 1 1 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|390939119|ref|YP_006402857.1| - 0.0076 15.5 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding DUF4428 PF14471.1 gi|390939119|ref|YP_006402857.1| - 0.012 15.3 0.4 0.018 14.7 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Zn-ribbon_8 PF09723.5 gi|390939119|ref|YP_006402857.1| - 0.033 14.1 0.5 1.4 8.9 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|390939119|ref|YP_006402857.1| - 0.072 12.9 0.5 0.2 11.4 0.4 1.5 1 1 1 2 2 2 0 Double zinc ribbon Rep_fac-A_C PF08646.5 gi|390939119|ref|YP_006402857.1| - 0.075 12.7 0.3 0.092 12.4 0.2 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain zf-C2H2_4 PF13894.1 gi|390939119|ref|YP_006402857.1| - 0.083 13.2 1.0 6.7 7.2 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Elf1 PF05129.8 gi|390939119|ref|YP_006402857.1| - 0.11 12.1 1.0 0.29 10.8 0.7 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like UPF0547 PF10571.4 gi|390939119|ref|YP_006402857.1| - 0.13 12.0 5.0 0.77 9.5 1.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2318 PF10080.4 gi|390939119|ref|YP_006402857.1| - 0.13 12.0 0.1 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DUF1610 PF07754.6 gi|390939119|ref|YP_006402857.1| - 0.14 12.3 0.2 0.14 12.3 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-Sec23_Sec24 PF04810.10 gi|390939119|ref|YP_006402857.1| - 0.17 11.4 0.9 3.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Prim_Zn_Ribbon PF08273.7 gi|390939119|ref|YP_006402857.1| - 0.23 11.5 3.9 0.43 10.7 2.7 1.5 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-ISL3 PF14690.1 gi|390939119|ref|YP_006402857.1| - 0.36 10.8 5.1 0.79 9.8 0.3 2.4 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ogr_Delta PF04606.7 gi|390939119|ref|YP_006402857.1| - 0.45 10.2 1.9 5.6 6.7 0.0 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF4379 PF14311.1 gi|390939119|ref|YP_006402857.1| - 0.66 9.8 4.2 2.4 8.0 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zf-ribbon_3 PF13248.1 gi|390939119|ref|YP_006402857.1| - 0.74 9.1 6.8 2.3 7.5 0.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|390939119|ref|YP_006402857.1| - 2 8.1 6.6 8.7 6.0 1.1 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|390939119|ref|YP_006402857.1| - 2.1 7.9 8.2 4.5 6.8 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNase_PH PF01138.16 gi|390939120|ref|YP_006402858.1| - 1.5e-26 93.2 0.0 2.4e-26 92.5 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|390939120|ref|YP_006402858.1| - 6.3e-12 45.2 0.2 2.5e-11 43.3 0.2 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|390939121|ref|YP_006402859.1| - 1.2e-35 122.7 0.0 1.5e-35 122.3 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|390939121|ref|YP_006402859.1| - 2.7e-14 52.8 0.2 5.1e-14 51.9 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|390939122|ref|YP_006402860.1| - 8.7e-07 28.4 0.1 1.8e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|390939122|ref|YP_006402860.1| - 0.0019 17.6 0.6 0.0063 16.0 0.1 2.1 2 1 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|390939122|ref|YP_006402860.1| - 0.0055 16.3 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 KH domain SBDS PF01172.13 gi|390939123|ref|YP_006402861.1| - 1.3e-25 89.0 0.2 2e-25 88.3 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|390939123|ref|YP_006402861.1| - 2.2e-21 75.8 1.7 3.1e-21 75.3 1.2 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.19 gi|390939123|ref|YP_006402861.1| - 0.013 15.3 0.1 0.045 13.6 0.0 1.8 2 0 0 2 2 2 0 Elongation factor G C-terminus Proteasome PF00227.21 gi|390939124|ref|YP_006402862.1| - 5.8e-55 185.5 0.2 7.9e-55 185.0 0.1 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|390939124|ref|YP_006402862.1| - 2e-15 55.7 0.3 8e-15 53.8 0.2 2.1 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Tol_Tol_Ttg2 PF05494.7 gi|390939124|ref|YP_006402862.1| - 0.071 12.6 0.5 0.49 9.9 0.1 2.0 2 0 0 2 2 2 0 Toluene tolerance, Ttg2 RNase_P_Rpp14 PF01900.14 gi|390939125|ref|YP_006402863.1| - 4.9e-15 55.3 0.0 8e-15 54.6 0.0 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family DUF4257 PF14074.1 gi|390939125|ref|YP_006402863.1| - 0.13 11.9 0.6 2.3 7.9 0.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF4257) RNase_P_p30 PF01876.11 gi|390939126|ref|YP_006402864.1| - 2.1e-13 49.7 0.0 2.8e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 Amidohydro_4 PF13147.1 gi|390939126|ref|YP_006402864.1| - 0.081 12.9 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase RNA_binding PF01877.12 gi|390939127|ref|YP_006402865.1| - 8.7e-24 83.8 0.0 1e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 RNA binding DUF2760 PF10816.3 gi|390939127|ref|YP_006402865.1| - 0.016 14.7 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2760) CRAL_TRIO_2 PF13716.1 gi|390939127|ref|YP_006402865.1| - 0.045 13.6 0.1 0.093 12.6 0.0 1.6 1 1 1 2 2 2 0 Divergent CRAL/TRIO domain Ribosomal_L15e PF00827.12 gi|390939128|ref|YP_006402866.1| - 3.9e-81 271.1 5.9 4.8e-81 270.8 4.1 1.2 1 0 0 1 1 1 1 Ribosomal L15 MMR_HSR1_C PF08438.5 gi|390939129|ref|YP_006402867.1| - 4.3e-33 113.8 0.0 8.7e-33 112.8 0.0 1.5 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|390939129|ref|YP_006402867.1| - 5e-18 65.1 0.0 1e-17 64.1 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|390939129|ref|YP_006402867.1| - 3e-13 49.3 0.0 6.7e-13 48.2 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|390939129|ref|YP_006402867.1| - 1.6e-06 27.4 0.5 5.7e-05 22.4 0.1 2.9 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.8 gi|390939129|ref|YP_006402867.1| - 0.027 14.2 0.0 1.8 8.4 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF933) ABC_tran PF00005.22 gi|390939129|ref|YP_006402867.1| - 0.041 14.1 0.1 0.12 12.6 0.0 1.7 2 0 0 2 2 2 0 ABC transporter MobB PF03205.9 gi|390939129|ref|YP_006402867.1| - 0.052 13.2 0.2 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B GTP_EFTU PF00009.22 gi|390939129|ref|YP_006402867.1| - 0.058 12.8 0.1 10 5.4 0.0 3.0 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain phiKZ_IP PF12699.2 gi|390939129|ref|YP_006402867.1| - 0.11 11.4 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 phiKZ-like phage internal head proteins AAA_21 PF13304.1 gi|390939129|ref|YP_006402867.1| - 0.18 11.7 1.0 0.58 10.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain DUF2095 PF09868.4 gi|390939130|ref|YP_006402868.1| - 8.2e-19 67.6 0.2 2e-17 63.1 0.2 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) HeH PF12949.2 gi|390939130|ref|YP_006402868.1| - 0.038 13.5 0.1 0.72 9.4 0.0 2.3 2 0 0 2 2 2 0 HeH/LEM domain NTP_transferase PF00483.18 gi|390939131|ref|YP_006402869.1| - 3e-29 102.0 0.0 5.1e-29 101.3 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|390939131|ref|YP_006402869.1| - 4.2e-16 57.6 19.2 7.5e-06 25.2 0.6 5.7 3 2 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|390939131|ref|YP_006402869.1| - 1.5e-12 47.8 0.0 2.1e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|390939131|ref|YP_006402869.1| - 7.7e-06 25.5 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|390939131|ref|YP_006402869.1| - 0.0037 16.7 2.1 0.68 9.5 0.1 3.6 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Ribosomal_S3Ae PF01015.13 gi|390939132|ref|YP_006402870.1| - 4.6e-75 251.2 2.7 5.2e-75 251.0 1.9 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Post_transc_reg PF13797.1 gi|390939132|ref|YP_006402870.1| - 0.0037 16.8 4.2 0.048 13.2 0.1 2.7 3 0 0 3 3 3 2 Post-transcriptional regulator Ribosomal_S13_N PF08069.7 gi|390939135|ref|YP_006402873.1| - 3.6e-25 87.5 0.1 8.8e-25 86.3 0.1 1.7 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|390939135|ref|YP_006402873.1| - 2.4e-20 72.0 0.3 3.3e-20 71.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ham1p_like PF01725.11 gi|390939136|ref|YP_006402874.1| - 2e-45 154.5 0.0 2.2e-45 154.3 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RIO1 PF01163.17 gi|390939137|ref|YP_006402875.1| - 3.2e-15 55.9 0.0 5.1e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|390939137|ref|YP_006402875.1| - 3.1e-12 46.7 0.5 2.6e-05 24.0 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|390939137|ref|YP_006402875.1| - 2.4e-09 36.5 0.0 3.3e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|390939137|ref|YP_006402875.1| - 1.2e-08 34.4 0.0 1.5e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|390939137|ref|YP_006402875.1| - 5.6e-07 28.8 0.0 6.9e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Choline_kinase PF01633.15 gi|390939137|ref|YP_006402875.1| - 0.014 14.9 0.1 0.87 9.1 0.0 2.1 1 1 1 2 2 2 0 Choline/ethanolamine kinase EcKinase PF02958.15 gi|390939137|ref|YP_006402875.1| - 0.015 14.4 0.1 0.026 13.6 0.0 1.4 1 1 0 1 1 1 0 Ecdysteroid kinase Peptidase_M22 PF00814.20 gi|390939138|ref|YP_006402876.1| - 4.4e-70 236.2 0.0 5.3e-70 235.9 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family BcrAD_BadFG PF01869.15 gi|390939138|ref|YP_006402876.1| - 0.019 14.2 0.0 0.67 9.2 0.0 2.3 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family CheX PF13690.1 gi|390939138|ref|YP_006402876.1| - 0.14 12.0 0.0 0.39 10.6 0.0 1.7 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX Ribosomal_S27 PF01599.14 gi|390939139|ref|YP_006402877.1| - 1.7e-11 43.7 1.8 2e-11 43.5 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a DUF2082 PF09855.4 gi|390939139|ref|YP_006402877.1| - 0.0039 17.0 2.8 0.69 9.8 0.2 2.3 2 0 0 2 2 2 2 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) OrfB_Zn_ribbon PF07282.6 gi|390939139|ref|YP_006402877.1| - 0.0047 16.5 0.4 0.0047 16.5 0.3 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|390939139|ref|YP_006402877.1| - 0.0071 15.7 1.7 0.54 9.7 0.1 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain C1_1 PF00130.17 gi|390939139|ref|YP_006402877.1| - 0.0073 16.0 1.4 0.0088 15.7 0.9 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.2 gi|390939139|ref|YP_006402877.1| - 0.009 15.8 0.9 0.011 15.4 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon IBR PF01485.16 gi|390939139|ref|YP_006402877.1| - 0.012 15.4 0.9 0.012 15.4 0.6 1.1 1 0 0 1 1 1 0 IBR domain Zn_Tnp_IS1595 PF12760.2 gi|390939139|ref|YP_006402877.1| - 0.017 14.9 3.1 0.021 14.5 2.2 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-piccolo PF05715.8 gi|390939139|ref|YP_006402877.1| - 0.019 14.9 0.8 0.022 14.7 0.5 1.1 1 0 0 1 1 1 0 Piccolo Zn-finger RNA_POL_M_15KD PF02150.11 gi|390939139|ref|YP_006402877.1| - 0.023 14.3 0.6 0.057 13.1 0.4 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|390939139|ref|YP_006402877.1| - 0.028 13.6 2.9 0.13 11.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L37ae PF01780.14 gi|390939139|ref|YP_006402877.1| - 0.037 13.8 0.7 0.041 13.7 0.5 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family Zn_ribbon_recom PF13408.1 gi|390939139|ref|YP_006402877.1| - 0.044 14.0 1.6 0.062 13.5 0.8 1.4 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-LITAF-like PF10601.4 gi|390939139|ref|YP_006402877.1| - 0.079 12.8 1.4 0.24 11.2 0.1 1.9 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|390939139|ref|YP_006402877.1| - 0.081 12.4 2.1 0.36 10.3 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.1 gi|390939139|ref|YP_006402877.1| - 0.1 12.6 5.6 0.29 11.1 0.1 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-H2C2_2 PF13465.1 gi|390939139|ref|YP_006402877.1| - 0.11 12.8 4.2 4.8 7.6 0.4 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-tcix PF14952.1 gi|390939139|ref|YP_006402877.1| - 0.13 11.6 0.7 0.13 11.6 0.5 1.7 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding RNHCP PF12647.2 gi|390939139|ref|YP_006402877.1| - 0.14 12.0 1.0 0.15 11.8 0.7 1.1 1 0 0 1 1 1 0 RNHCP domain DUF2387 PF09526.5 gi|390939139|ref|YP_006402877.1| - 0.15 11.9 0.8 0.21 11.5 0.6 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|390939139|ref|YP_006402877.1| - 0.15 11.5 4.2 0.17 11.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|390939139|ref|YP_006402877.1| - 0.21 11.2 3.3 1.2 8.8 2.3 2.0 1 1 0 1 1 1 0 Nudix N-terminal zf-RanBP PF00641.13 gi|390939139|ref|YP_006402877.1| - 0.41 9.8 3.9 2.4 7.3 0.3 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others GFA PF04828.9 gi|390939139|ref|YP_006402877.1| - 0.47 10.4 3.3 0.62 10.0 0.1 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme TFIIS_C PF01096.13 gi|390939139|ref|YP_006402877.1| - 0.71 9.5 3.7 3.4 7.3 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|390939139|ref|YP_006402877.1| - 0.96 9.4 5.7 0.57 10.1 0.4 2.2 1 1 1 2 2 2 0 Zinc ribbon domain YhfH PF14149.1 gi|390939139|ref|YP_006402877.1| - 6.5 6.6 6.8 28 4.6 4.7 2.0 1 1 0 1 1 1 0 YhfH-like protein Ribosomal_S24e PF01282.14 gi|390939140|ref|YP_006402878.1| - 4.2e-23 80.9 0.1 5.6e-23 80.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.7 gi|390939141|ref|YP_006402879.1| - 7.4e-15 54.3 0.1 1.4e-14 53.5 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|390939142|ref|YP_006402880.1| - 1.8e-14 53.3 0.1 2.1e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|390939142|ref|YP_006402880.1| - 0.0016 18.2 1.5 0.0021 17.8 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|390939142|ref|YP_006402880.1| - 0.0026 17.1 1.3 0.0043 16.4 0.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|390939142|ref|YP_006402880.1| - 0.0056 15.8 2.0 0.0078 15.3 1.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-P11 PF03854.9 gi|390939142|ref|YP_006402880.1| - 0.0069 15.8 0.3 0.011 15.2 0.2 1.2 1 0 0 1 1 1 1 P-11 zinc finger UPF0547 PF10571.4 gi|390939142|ref|YP_006402880.1| - 0.0069 16.0 4.5 0.011 15.4 3.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-C4H2 PF10146.4 gi|390939142|ref|YP_006402880.1| - 0.017 15.1 0.9 0.021 14.8 0.6 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein zf-C3HC4_3 PF13920.1 gi|390939142|ref|YP_006402880.1| - 0.032 13.9 1.9 0.044 13.4 1.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2072 PF09845.4 gi|390939142|ref|YP_006402880.1| - 0.05 13.5 1.6 0.21 11.5 0.5 1.9 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) NRDD PF13597.1 gi|390939142|ref|YP_006402880.1| - 0.062 11.3 0.3 0.075 11.1 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.14 gi|390939142|ref|YP_006402880.1| - 0.088 12.5 0.1 0.091 12.4 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|390939142|ref|YP_006402880.1| - 0.095 13.0 2.1 0.23 11.8 1.5 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|390939142|ref|YP_006402880.1| - 0.099 11.9 0.9 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|390939142|ref|YP_006402880.1| - 0.17 12.0 0.6 0.17 12.0 0.4 2.0 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Zn-ribbon_8 PF09723.5 gi|390939142|ref|YP_006402880.1| - 0.66 9.9 4.8 4.7 7.2 0.4 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|390939142|ref|YP_006402880.1| - 7.3 6.3 6.8 41 3.9 0.3 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS SHS2_Rpb7-N PF03876.12 gi|390939143|ref|YP_006402881.1| - 1.2e-16 60.5 0.3 7.1e-16 58.0 0.0 2.1 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|390939143|ref|YP_006402881.1| - 9.1e-07 28.8 2.8 2.1e-06 27.7 0.3 2.4 2 1 1 3 3 3 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|390939143|ref|YP_006402881.1| - 0.013 15.6 0.0 0.028 14.6 0.0 1.5 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 Fcf1 PF04900.7 gi|390939144|ref|YP_006402882.1| - 3.2e-12 46.4 0.0 5.2e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Fcf1 PIN PF01850.16 gi|390939144|ref|YP_006402882.1| - 0.001 19.3 0.6 0.0054 17.0 0.4 1.8 1 1 0 1 1 1 1 PIN domain RNase_Zc3h12a PF11977.3 gi|390939144|ref|YP_006402882.1| - 0.04 13.7 0.0 0.049 13.4 0.0 1.2 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain Leuk-A4-hydro_C PF09127.6 gi|390939144|ref|YP_006402882.1| - 0.15 11.6 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Leukotriene A4 hydrolase, C-terminal AAA_18 PF13238.1 gi|390939144|ref|YP_006402882.1| - 0.19 12.0 0.8 0.26 11.6 0.6 1.3 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|390939145|ref|YP_006402883.1| - 2.6e-42 144.3 0.0 4.2e-42 143.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|390939145|ref|YP_006402883.1| - 1.6e-26 92.1 0.8 3.5e-26 91.0 0.5 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|390939145|ref|YP_006402883.1| - 1.1e-05 25.4 0.8 3.8e-05 23.7 0.4 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|390939145|ref|YP_006402883.1| - 6.2e-05 22.5 0.7 0.25 10.8 0.1 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|390939145|ref|YP_006402883.1| - 0.0011 18.9 0.0 0.0031 17.4 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|390939145|ref|YP_006402883.1| - 0.011 14.9 0.5 2.1 7.6 0.0 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B Miro PF08477.8 gi|390939145|ref|YP_006402883.1| - 0.055 13.9 0.0 0.23 11.9 0.0 2.1 1 1 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|390939145|ref|YP_006402883.1| - 0.11 12.3 0.1 0.37 10.5 0.0 1.9 2 1 0 2 2 2 0 Dynamin family Ribosomal_S6e PF01092.14 gi|390939146|ref|YP_006402884.1| - 1.2e-29 102.5 0.1 2.5e-29 101.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|390939147|ref|YP_006402885.1| - 3e-34 118.1 0.0 7.7e-34 116.7 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|390939147|ref|YP_006402885.1| - 1e-21 76.8 0.0 2.6e-21 75.5 0.0 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|390939147|ref|YP_006402885.1| - 2.5e-21 75.0 0.9 7.4e-21 73.5 0.6 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|390939147|ref|YP_006402885.1| - 1.4e-11 44.3 0.7 1.7e-10 40.8 0.0 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|390939147|ref|YP_006402885.1| - 3.3e-06 27.0 0.0 9.1e-06 25.6 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|390939147|ref|YP_006402885.1| - 4.7e-05 23.8 0.1 0.00016 22.1 0.0 2.0 2 0 0 2 2 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|390939147|ref|YP_006402885.1| - 0.00016 21.3 0.0 0.00075 19.1 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|390939147|ref|YP_006402885.1| - 0.0012 18.9 0.0 0.0056 16.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain Dynamin_N PF00350.18 gi|390939147|ref|YP_006402885.1| - 0.0051 16.6 0.1 0.06 13.1 0.0 2.5 3 0 0 3 3 3 1 Dynamin family Arf PF00025.16 gi|390939147|ref|YP_006402885.1| - 0.0062 15.7 0.1 3.7 6.7 0.0 3.1 2 1 0 2 2 2 1 ADP-ribosylation factor family Ras PF00071.17 gi|390939147|ref|YP_006402885.1| - 0.029 13.7 0.0 0.18 11.1 0.0 2.3 1 1 0 1 1 1 0 Ras family PduV-EutP PF10662.4 gi|390939147|ref|YP_006402885.1| - 0.097 12.1 0.1 0.72 9.3 0.0 2.4 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Ribosomal_L24e PF01246.15 gi|390939148|ref|YP_006402886.1| - 3.8e-22 77.9 1.0 4.1e-22 77.8 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|390939148|ref|YP_006402886.1| - 1.2e-05 24.7 1.2 1.2e-05 24.7 0.8 1.4 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif SOBP PF15279.1 gi|390939148|ref|YP_006402886.1| - 0.0039 17.6 0.2 0.0047 17.3 0.1 1.1 1 0 0 1 1 1 1 Sine oculis-binding protein DUF2175 PF09943.4 gi|390939148|ref|YP_006402886.1| - 0.029 14.4 0.2 0.03 14.3 0.1 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) DUF2116 PF09889.4 gi|390939148|ref|YP_006402886.1| - 0.044 13.5 1.2 0.5 10.2 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) YHS PF04945.8 gi|390939148|ref|YP_006402886.1| - 0.11 12.3 0.2 0.22 11.4 0.1 1.5 1 1 0 1 1 1 0 YHS domain Ribosomal_S28e PF01200.13 gi|390939149|ref|YP_006402887.1| - 7.7e-30 102.4 6.1 9.4e-30 102.1 4.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|390939149|ref|YP_006402887.1| - 0.038 13.7 1.6 0.62 9.8 0.1 3.1 2 1 0 2 2 2 0 KOW motif Ribosomal_L7Ae PF01248.21 gi|390939150|ref|YP_006402888.1| - 4.3e-31 106.2 0.4 5.4e-31 105.9 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|390939150|ref|YP_006402888.1| - 0.0045 16.7 0.0 0.0069 16.1 0.0 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.6 gi|390939150|ref|YP_006402888.1| - 0.0058 16.4 0.0 0.0069 16.2 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 tRNA-synt_1c PF00749.16 gi|390939151|ref|YP_006402889.1| - 2.8e-73 246.3 0.0 4.2e-73 245.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|390939151|ref|YP_006402889.1| - 1.4e-20 73.7 0.0 2.9e-20 72.6 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF2118 PF09891.4 gi|390939152|ref|YP_006402890.1| - 2e-14 53.5 0.0 2.3e-14 53.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) FMN_dh PF01070.13 gi|390939153|ref|YP_006402891.1| - 4.8e-20 71.7 0.0 4.4e-12 45.5 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase Memo PF01875.12 gi|390939154|ref|YP_006402892.1| - 3.3e-81 272.1 0.0 3.8e-81 271.9 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|390939154|ref|YP_006402892.1| - 0.0065 15.4 0.1 0.016 14.2 0.1 1.5 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.15 gi|390939155|ref|YP_006402893.1| - 6.5e-41 139.8 0.0 1.6e-20 73.2 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 HAD PF12710.2 gi|390939155|ref|YP_006402893.1| - 0.1 12.7 0.0 0.21 11.7 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DRTGG PF07085.7 gi|390939155|ref|YP_006402893.1| - 0.14 11.7 0.0 0.3 10.7 0.0 1.6 1 0 0 1 1 1 0 DRTGG domain RNA_pol_N PF01194.12 gi|390939156|ref|YP_006402894.1| - 5.2e-30 103.2 1.1 5.8e-30 103.1 0.8 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|390939156|ref|YP_006402894.1| - 0.0019 18.2 0.3 0.0027 17.7 0.2 1.3 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) FYRN PF05964.9 gi|390939156|ref|YP_006402894.1| - 0.25 10.8 1.3 0.4 10.1 0.9 1.4 1 0 0 1 1 1 0 F/Y-rich N-terminus Ribosomal_S9 PF00380.14 gi|390939157|ref|YP_006402895.1| - 8.6e-35 119.6 0.0 1e-34 119.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|390939158|ref|YP_006402896.1| - 1.7e-29 102.5 0.1 2e-29 102.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|390939159|ref|YP_006402897.1| - 3.6e-14 53.2 0.1 5.7e-14 52.5 0.1 1.3 1 1 0 1 1 1 1 Ribosomal protein L18e/L15 Carla_C4 PF01623.12 gi|390939159|ref|YP_006402897.1| - 0.019 14.6 0.1 0.03 14.0 0.1 1.3 1 0 0 1 1 1 0 Carlavirus putative nucleic acid binding protein RNA_pol_A_bac PF01000.21 gi|390939160|ref|YP_006402898.1| - 5.4e-30 103.8 0.0 1.5e-29 102.3 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|390939160|ref|YP_006402898.1| - 1.8e-12 46.2 0.0 2.2e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.2 gi|390939160|ref|YP_006402898.1| - 6e-08 32.9 10.8 2.4e-07 31.0 7.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|390939160|ref|YP_006402898.1| - 9.8e-08 32.1 12.2 1.9e-07 31.2 8.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|390939160|ref|YP_006402898.1| - 3.6e-07 29.7 11.8 0.00057 19.6 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|390939160|ref|YP_006402898.1| - 3.9e-07 29.7 8.6 7.4e-07 28.8 5.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|390939160|ref|YP_006402898.1| - 6.3e-07 28.7 11.5 0.0001 21.7 1.1 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|390939160|ref|YP_006402898.1| - 9.9e-06 26.2 4.5 0.048 14.4 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|390939160|ref|YP_006402898.1| - 2.9e-05 23.7 11.6 0.0065 16.3 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|390939160|ref|YP_006402898.1| - 4e-05 23.3 11.5 9.6e-05 22.1 8.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|390939160|ref|YP_006402898.1| - 0.00014 22.1 15.2 0.02 15.3 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|390939160|ref|YP_006402898.1| - 0.00014 21.8 12.1 0.059 13.7 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|390939160|ref|YP_006402898.1| - 0.00019 21.4 10.4 0.00058 19.8 7.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|390939160|ref|YP_006402898.1| - 0.00026 21.3 5.4 0.078 13.4 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|390939160|ref|YP_006402898.1| - 0.14 12.5 12.5 24 5.3 2.1 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|390939160|ref|YP_006402898.1| - 0.25 11.2 7.5 0.98 9.3 5.1 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|390939160|ref|YP_006402898.1| - 0.92 10.1 10.4 0.61 10.6 0.6 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|390939160|ref|YP_006402898.1| - 6.3 7.2 10.9 56 4.2 7.5 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain Ribosomal_S11 PF00411.14 gi|390939161|ref|YP_006402899.1| - 4.3e-43 145.9 0.4 5.1e-43 145.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|390939162|ref|YP_006402900.1| - 1e-14 53.6 0.3 1e-14 53.6 0.2 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|390939162|ref|YP_006402900.1| - 1.9e-06 28.1 1.4 3.1e-06 27.4 1.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain YlaH PF14036.1 gi|390939162|ref|YP_006402900.1| - 0.1 12.6 0.0 0.28 11.2 0.0 1.6 2 0 0 2 2 2 0 YlaH-like protein Ribosomal_S13 PF00416.17 gi|390939163|ref|YP_006402901.1| - 8.4e-27 93.7 0.0 1.1e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S13/S18 Ribosomal_S10 PF00338.17 gi|390939164|ref|YP_006402902.1| - 6.7e-29 99.5 0.6 7.8e-29 99.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|390939165|ref|YP_006402903.1| - 2.7e-56 189.9 0.0 4.5e-56 189.2 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|390939165|ref|YP_006402903.1| - 3.5e-30 104.0 0.8 1.3e-29 102.3 0.1 2.2 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|390939165|ref|YP_006402903.1| - 2e-17 63.0 2.6 4.4e-17 61.9 1.8 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|390939165|ref|YP_006402903.1| - 1.5e-07 30.9 2.6 4.3e-07 29.4 1.8 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|390939165|ref|YP_006402903.1| - 1.1e-05 25.3 0.0 3.1e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|390939165|ref|YP_006402903.1| - 0.0045 17.4 0.3 0.037 14.5 0.2 2.2 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|390939165|ref|YP_006402903.1| - 0.032 14.0 0.0 7.7 6.3 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Gtr1_RagA PF04670.7 gi|390939165|ref|YP_006402903.1| - 0.042 12.9 0.0 0.15 11.1 0.0 1.9 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region SRPRB PF09439.5 gi|390939165|ref|YP_006402903.1| - 0.1 11.8 0.1 0.34 10.1 0.0 1.8 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit Ribosomal_S7 PF00177.16 gi|390939166|ref|YP_006402904.1| - 4e-46 156.2 0.3 4.8e-46 156.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|390939167|ref|YP_006402905.1| - 2.7e-38 130.1 0.1 3.1e-38 129.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|390939168|ref|YP_006402906.1| - 5.4e-14 51.4 2.6 2.5e-08 33.3 0.1 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|390939168|ref|YP_006402906.1| - 1.7e-12 46.9 1.8 3.8e-11 42.6 0.1 2.4 2 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|390939168|ref|YP_006402906.1| - 2.9e-09 36.4 0.2 0.0011 18.5 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|390939168|ref|YP_006402906.1| - 1.5e-07 30.9 0.5 0.0014 18.2 0.0 2.5 2 0 0 2 2 2 2 KH domain Ribosomal_L7Ae PF01248.21 gi|390939169|ref|YP_006402907.1| - 2.1e-17 62.4 0.0 2.3e-17 62.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|390939170|ref|YP_006402908.1| - 7.4e-53 179.5 0.3 1e-52 179.1 0.2 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.13 gi|390939170|ref|YP_006402908.1| - 0.012 15.1 0.5 0.054 13.0 0.1 2.3 2 0 0 2 2 2 0 NAC domain KGG PF10685.4 gi|390939170|ref|YP_006402908.1| - 0.27 11.2 4.4 0.8 9.7 1.4 2.4 2 0 0 2 2 2 0 Stress-induced bacterial acidophilic repeat motif SAS4 PF15460.1 gi|390939170|ref|YP_006402908.1| - 0.57 10.0 4.0 0.38 10.6 0.2 2.8 3 1 0 3 3 3 0 Something about silencing, SAS, complex subunit 4 MerR-DNA-bind PF09278.6 gi|390939170|ref|YP_006402908.1| - 0.72 10.2 0.1 0.72 10.2 0.0 3.4 4 0 0 4 4 4 0 MerR, DNA binding RNA_pol_Rpb1_1 PF04997.7 gi|390939171|ref|YP_006402909.1| - 9.1e-91 304.5 0.0 5.3e-90 302.0 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|390939171|ref|YP_006402909.1| - 9e-70 233.9 0.0 2.2e-69 232.6 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|390939171|ref|YP_006402909.1| - 4.5e-38 130.4 0.0 1e-37 129.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|390939171|ref|YP_006402909.1| - 1.4e-28 99.9 0.0 2.6e-28 99.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|390939171|ref|YP_006402909.1| - 1.9e-26 91.9 0.0 3.8e-26 90.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 zf-ribbon_3 PF13248.1 gi|390939171|ref|YP_006402909.1| - 0.011 14.8 1.0 0.011 14.8 0.7 3.1 2 1 0 2 2 2 0 zinc-ribbon domain Nop16 PF09420.5 gi|390939171|ref|YP_006402909.1| - 0.096 12.7 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 Ribosome biogenesis protein Nop16 zinc_ribbon_2 PF13240.1 gi|390939171|ref|YP_006402909.1| - 0.8 9.2 9.5 1.3 8.6 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|390939171|ref|YP_006402909.1| - 0.82 9.7 2.4 8.7 6.4 0.1 2.9 3 0 0 3 3 3 0 zinc-finger zf-ISL3 PF14690.1 gi|390939171|ref|YP_006402909.1| - 0.86 9.6 7.1 1.4 9.0 0.1 3.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|390939171|ref|YP_006402909.1| - 3.9 7.3 6.2 7.8 6.3 0.0 2.6 2 1 0 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|390939171|ref|YP_006402909.1| - 5.6 6.7 6.0 2.9 7.5 0.0 2.9 3 0 0 3 3 3 0 Putative transposase DNA-binding domain RNA_pol_Rpb2_6 PF00562.23 gi|390939172|ref|YP_006402910.1| - 4.3e-129 430.6 0.0 5.9e-129 430.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|390939172|ref|YP_006402910.1| - 1.5e-50 170.9 0.3 2.1e-50 170.4 0.2 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|390939172|ref|YP_006402910.1| - 1.7e-25 89.5 1.2 1.2e-24 86.7 0.2 2.6 2 1 0 2 2 2 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.15 gi|390939172|ref|YP_006402910.1| - 1.8e-25 89.0 0.0 3.6e-25 88.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.11 gi|390939172|ref|YP_006402910.1| - 1.9e-25 88.3 0.0 4.3e-25 87.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.8 gi|390939172|ref|YP_006402910.1| - 6.9e-22 77.0 0.8 2e-21 75.5 0.6 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|390939172|ref|YP_006402910.1| - 4.8e-14 52.0 0.6 1.2e-13 50.7 0.4 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb5_C PF01191.14 gi|390939173|ref|YP_006402911.1| - 1.9e-33 113.8 0.0 2.1e-33 113.7 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain