#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.11	gi|390937753|ref|YP_006401491.1|	-	1.6e-16	60.1	1.6	1.4e-15	57.0	0.2	2.9	2	1	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|390937753|ref|YP_006401491.1|	-	5.5e-11	42.9	0.0	1.7e-10	41.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|390937753|ref|YP_006401491.1|	-	1e-09	38.9	0.0	2.8e-09	37.5	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|390937753|ref|YP_006401491.1|	-	3.3e-09	37.3	0.0	3.7e-08	33.9	0.0	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
TniB	PF05621.11	gi|390937753|ref|YP_006401491.1|	-	3.5e-09	36.3	0.0	6.9e-09	35.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|390937753|ref|YP_006401491.1|	-	6e-08	32.9	0.3	1.3e-07	31.8	0.3	1.5	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF2075	PF09848.9	gi|390937753|ref|YP_006401491.1|	-	6.7e-05	22.3	0.0	8.8e-05	21.9	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
NB-ARC	PF00931.22	gi|390937753|ref|YP_006401491.1|	-	0.00016	21.0	0.0	0.00024	20.4	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
DUF815	PF05673.13	gi|390937753|ref|YP_006401491.1|	-	0.00022	20.5	0.0	0.00048	19.4	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_7	PF12775.7	gi|390937753|ref|YP_006401491.1|	-	0.001	18.6	0.0	0.002	17.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
AAA_32	PF13654.6	gi|390937753|ref|YP_006401491.1|	-	0.0011	17.8	1.1	0.15	10.8	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.12	gi|390937753|ref|YP_006401491.1|	-	0.0036	17.3	0.0	0.0063	16.4	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
Sigma54_activat	PF00158.26	gi|390937753|ref|YP_006401491.1|	-	0.011	15.5	0.0	0.019	14.7	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_assoc_2	PF16193.5	gi|390937753|ref|YP_006401491.1|	-	0.014	15.8	0.1	0.039	14.3	0.1	1.7	1	0	0	1	1	1	0	AAA	C-terminal	domain
Bac_DnaA	PF00308.18	gi|390937753|ref|YP_006401491.1|	-	0.021	14.6	0.2	0.28	11.0	0.2	2.1	1	1	0	1	1	1	0	Bacterial	dnaA	protein
AAA_30	PF13604.6	gi|390937753|ref|YP_006401491.1|	-	0.039	13.7	0.0	0.1	12.3	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
AAA_19	PF13245.6	gi|390937753|ref|YP_006401491.1|	-	0.041	14.2	0.3	0.12	12.7	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|390937753|ref|YP_006401491.1|	-	0.042	13.2	0.0	0.077	12.3	0.0	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
TIP49_C	PF17856.1	gi|390937753|ref|YP_006401491.1|	-	0.047	13.8	0.0	0.17	12.0	0.0	1.9	1	0	0	1	1	1	0	TIP49	AAA-lid	domain
DEAD	PF00270.29	gi|390937753|ref|YP_006401491.1|	-	0.048	13.4	0.9	6.4	6.5	0.2	2.3	1	1	0	2	2	2	0	DEAD/DEAH	box	helicase
PIF1	PF05970.14	gi|390937753|ref|YP_006401491.1|	-	0.053	12.7	0.0	0.2	10.8	0.0	1.9	2	0	0	2	2	2	0	PIF1-like	helicase
TsaE	PF02367.17	gi|390937753|ref|YP_006401491.1|	-	0.055	13.5	0.0	0.11	12.6	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_14	PF13173.6	gi|390937753|ref|YP_006401491.1|	-	0.06	13.4	0.2	0.14	12.2	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|390937753|ref|YP_006401491.1|	-	0.16	12.4	0.0	0.34	11.3	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
DUF99	PF01949.16	gi|390937754|ref|YP_006401492.1|	-	6e-43	146.4	0.0	7e-43	146.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
PEPCK_GTP	PF00821.18	gi|390937755|ref|YP_006401493.1|	-	1e-101	340.4	0.0	1.4e-101	339.9	0.0	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase	C-terminal	P-loop	domain
PEPCK_N	PF17297.2	gi|390937755|ref|YP_006401493.1|	-	5.2e-62	209.3	0.0	6.9e-62	208.9	0.0	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase	N-terminal	domain
Aminotran_3	PF00202.21	gi|390937756|ref|YP_006401494.1|	-	1.8e-106	356.2	0.0	2.1e-106	356.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
PyrI	PF01948.18	gi|390937756|ref|YP_006401494.1|	-	0.058	13.7	0.0	0.16	12.2	0.0	1.7	1	0	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
Tic110	PF16940.5	gi|390937756|ref|YP_006401494.1|	-	0.1	11.0	0.1	0.17	10.4	0.1	1.2	1	0	0	1	1	1	0	Chloroplast	envelope	transporter
Na_Ala_symp	PF01235.17	gi|390937758|ref|YP_006401496.1|	-	1.4e-107	360.5	26.6	1.9e-107	360.0	26.6	1.1	1	0	0	1	1	1	1	Sodium:alanine	symporter	family
Keratin_assoc	PF09775.9	gi|390937758|ref|YP_006401496.1|	-	0.13	11.9	0.5	0.39	10.4	0.5	1.8	1	0	0	1	1	1	0	Keratinocyte-associated	protein	2
Radical_SAM	PF04055.21	gi|390937759|ref|YP_006401497.1|	-	8.1e-26	91.4	0.0	8.1e-26	91.4	0.0	2.2	3	0	0	3	3	3	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|390937759|ref|YP_006401497.1|	-	9.1e-10	38.7	1.4	1.4e-09	38.1	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|390937759|ref|YP_006401497.1|	-	8.8e-09	35.8	0.0	2.3e-08	34.4	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
zf-CHC2	PF01807.20	gi|390937759|ref|YP_006401497.1|	-	0.094	12.5	1.1	3.8	7.4	0.5	2.6	2	0	0	2	2	2	0	CHC2	zinc	finger
AAA_18	PF13238.6	gi|390937760|ref|YP_006401498.1|	-	3.2e-23	82.7	0.0	4e-23	82.4	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|390937760|ref|YP_006401498.1|	-	0.00034	21.0	0.0	0.0022	18.4	0.0	2.1	1	1	1	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|390937760|ref|YP_006401498.1|	-	0.0015	18.7	0.2	0.0064	16.7	0.1	2.1	1	1	1	2	2	2	1	AAA	domain
AAA_28	PF13521.6	gi|390937760|ref|YP_006401498.1|	-	0.0022	18.3	0.1	0.0027	17.9	0.1	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|390937760|ref|YP_006401498.1|	-	0.0041	17.5	0.1	0.022	15.2	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
CPT	PF07931.12	gi|390937760|ref|YP_006401498.1|	-	0.005	16.7	0.0	1.9	8.3	0.0	2.2	2	0	0	2	2	2	2	Chloramphenicol	phosphotransferase-like	protein
AAA_16	PF13191.6	gi|390937760|ref|YP_006401498.1|	-	0.014	15.8	0.1	0.018	15.4	0.1	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.14	gi|390937760|ref|YP_006401498.1|	-	0.014	15.4	0.0	0.028	14.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Viral_helicase1	PF01443.18	gi|390937760|ref|YP_006401498.1|	-	0.016	15.0	0.0	0.025	14.3	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
ATPase	PF06745.13	gi|390937760|ref|YP_006401498.1|	-	0.017	14.5	0.1	0.47	9.8	0.1	2.1	2	0	0	2	2	2	0	KaiC
AAA_22	PF13401.6	gi|390937760|ref|YP_006401498.1|	-	0.032	14.5	0.0	0.057	13.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|390937760|ref|YP_006401498.1|	-	0.037	13.7	0.0	0.054	13.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|390937760|ref|YP_006401498.1|	-	0.048	12.9	0.0	0.056	12.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Cytidylate_kin	PF02224.18	gi|390937760|ref|YP_006401498.1|	-	0.17	11.6	0.1	0.35	10.6	0.0	1.7	2	0	0	2	2	2	0	Cytidylate	kinase
KTI12	PF08433.10	gi|390937760|ref|YP_006401498.1|	-	0.17	11.3	0.0	0.24	10.8	0.0	1.2	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
IPT	PF01745.16	gi|390937760|ref|YP_006401498.1|	-	0.18	11.2	0.0	0.27	10.6	0.0	1.2	1	0	0	1	1	1	0	Isopentenyl	transferase
Zeta_toxin	PF06414.12	gi|390937760|ref|YP_006401498.1|	-	0.19	11.0	0.3	0.38	10.0	0.1	1.5	2	0	0	2	2	2	0	Zeta	toxin
MMR_HSR1	PF01926.23	gi|390937761|ref|YP_006401499.1|	-	2.1e-15	56.8	0.0	8.1e-11	42.0	0.0	2.2	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|390937761|ref|YP_006401499.1|	-	4.8e-13	49.4	0.0	7.8e-13	48.7	0.0	1.2	1	0	0	1	1	1	1	RsgA	GTPase
FeoB_N	PF02421.18	gi|390937761|ref|YP_006401499.1|	-	1.8e-07	30.8	0.0	0.00022	20.8	0.0	2.1	2	0	0	2	2	2	2	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.23	gi|390937761|ref|YP_006401499.1|	-	3.3e-07	30.5	0.3	0.058	13.4	0.0	3.1	2	1	1	3	3	3	3	Dynamin	family
GTP_EFTU	PF00009.27	gi|390937761|ref|YP_006401499.1|	-	0.00033	20.3	0.1	0.0013	18.4	0.0	1.8	1	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
PduV-EutP	PF10662.9	gi|390937761|ref|YP_006401499.1|	-	0.054	13.3	0.0	0.094	12.5	0.0	1.3	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_16	PF13191.6	gi|390937761|ref|YP_006401499.1|	-	0.089	13.2	0.1	0.21	11.9	0.0	1.6	2	0	0	2	2	2	0	AAA	ATPase	domain
ThiS	PF02597.20	gi|390937762|ref|YP_006401500.1|	-	0.017	15.7	0.1	0.02	15.5	0.1	1.2	1	0	0	1	1	1	0	ThiS	family
ThiS-like	PF14453.6	gi|390937762|ref|YP_006401500.1|	-	0.064	13.3	0.0	0.078	13.0	0.0	1.2	1	0	0	1	1	1	0	ThiS-like	ubiquitin
SeqA_N	PF17206.3	gi|390937762|ref|YP_006401500.1|	-	0.11	11.9	1.3	1.2	8.5	1.1	2.2	1	1	1	2	2	2	0	SeqA	protein	N-terminal	domain
MarR_2	PF12802.7	gi|390937762|ref|YP_006401500.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	MarR	family
ThiF	PF00899.21	gi|390937763|ref|YP_006401501.1|	-	1.7e-52	178.2	0.0	2.3e-52	177.8	0.0	1.1	1	0	0	1	1	1	1	ThiF	family
PglD_N	PF17836.1	gi|390937763|ref|YP_006401501.1|	-	0.034	14.8	0.0	0.077	13.7	0.0	1.6	1	0	0	1	1	1	0	PglD	N-terminal	domain
Sacchrp_dh_NADP	PF03435.18	gi|390937763|ref|YP_006401501.1|	-	0.039	14.2	0.0	0.086	13.1	0.0	1.6	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
ThiS	PF02597.20	gi|390937764|ref|YP_006401502.1|	-	4.2e-07	30.5	0.0	5.3e-07	30.2	0.0	1.2	1	0	0	1	1	1	1	ThiS	family
TrkA_C	PF02080.21	gi|390937764|ref|YP_006401502.1|	-	4e-05	23.4	0.2	0.18	11.6	0.1	2.1	2	0	0	2	2	2	2	TrkA-C	domain
Ub-RnfH	PF03658.14	gi|390937764|ref|YP_006401502.1|	-	0.031	14.7	0.0	0.18	12.2	0.0	1.9	1	1	0	1	1	1	0	RnfH	family	Ubiquitin
FHA	PF00498.26	gi|390937764|ref|YP_006401502.1|	-	0.056	13.8	0.0	0.13	12.6	0.0	1.7	2	0	0	2	2	2	0	FHA	domain
Gluconate_2-dh3	PF13618.6	gi|390937765|ref|YP_006401503.1|	-	0.13	12.5	0.0	0.13	12.5	0.0	1.1	1	0	0	1	1	1	0	Gluconate	2-dehydrogenase	subunit	3
DUF2148	PF09918.9	gi|390937766|ref|YP_006401504.1|	-	7.2e-30	102.8	0.4	7.2e-30	102.8	0.4	1.6	2	0	0	2	2	2	1	Uncharacterized	protein	containing	a	ferredoxin	domain	(DUF2148)
DALR_1	PF05746.15	gi|390937766|ref|YP_006401504.1|	-	0.00015	21.9	0.1	0.00022	21.4	0.1	1.3	1	0	0	1	1	1	1	DALR	anticodon	binding	domain
Pex19	PF04614.12	gi|390937766|ref|YP_006401504.1|	-	0.055	13.2	0.0	0.073	12.8	0.0	1.1	1	0	0	1	1	1	0	Pex19	protein	family
BPD_transp_2	PF02653.16	gi|390937767|ref|YP_006401505.1|	-	1.3e-35	122.9	35.0	1.6e-35	122.6	35.0	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|390937768|ref|YP_006401506.1|	-	1.3e-33	116.3	35.8	1.3e-33	116.3	35.8	1.9	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|390937769|ref|YP_006401507.1|	-	1.7e-52	177.5	0.0	6.3e-31	107.7	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|390937769|ref|YP_006401507.1|	-	1.9e-09	37.7	0.6	0.0009	19.1	0.1	2.8	3	0	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|390937769|ref|YP_006401507.1|	-	0.0044	17.6	0.0	0.0074	16.8	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|390937769|ref|YP_006401507.1|	-	0.0074	16.7	0.6	0.65	10.4	0.5	3.0	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|390937769|ref|YP_006401507.1|	-	0.0077	15.5	0.0	0.97	8.7	0.0	3.0	3	0	0	3	3	3	1	Zeta	toxin
AAA_16	PF13191.6	gi|390937769|ref|YP_006401507.1|	-	0.0097	16.3	0.1	0.1	13.0	0.0	2.4	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|390937769|ref|YP_006401507.1|	-	0.043	13.6	0.0	0.18	11.6	0.0	2.0	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|390937769|ref|YP_006401507.1|	-	0.063	13.0	0.1	0.31	10.7	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|390937769|ref|YP_006401507.1|	-	0.069	13.4	1.3	2.6	8.3	1.3	2.6	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|390937769|ref|YP_006401507.1|	-	0.18	11.4	0.1	0.35	10.4	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
DUF3584	PF12128.8	gi|390937769|ref|YP_006401507.1|	-	0.28	8.7	0.0	0.43	8.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Bmp	PF02608.14	gi|390937770|ref|YP_006401508.1|	-	1.2e-42	145.9	0.0	1.7e-42	145.5	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
ADH_N	PF08240.12	gi|390937771|ref|YP_006401509.1|	-	2.7e-31	107.7	1.4	4.8e-31	106.9	1.4	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|390937771|ref|YP_006401509.1|	-	1.9e-16	60.3	0.0	3.2e-16	59.5	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|390937771|ref|YP_006401509.1|	-	2.1e-14	53.5	0.0	5.8e-14	52.1	0.0	1.7	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|390937771|ref|YP_006401509.1|	-	5.2e-05	24.3	0.1	0.00012	23.1	0.1	1.6	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|390937771|ref|YP_006401509.1|	-	0.0012	19.6	0.0	0.0036	18.1	0.0	1.8	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Shikimate_DH	PF01488.20	gi|390937771|ref|YP_006401509.1|	-	0.14	12.2	0.0	0.3	11.1	0.0	1.6	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|390937771|ref|YP_006401509.1|	-	0.14	11.5	0.0	0.28	10.5	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
LacAB_rpiB	PF02502.18	gi|390937772|ref|YP_006401510.1|	-	2.1e-37	128.2	0.0	2.3e-37	128.1	0.0	1.0	1	0	0	1	1	1	1	Ribose/Galactose	Isomerase
Gly_rich_SFCGS	PF14272.6	gi|390937772|ref|YP_006401510.1|	-	0.018	15.0	0.0	0.024	14.7	0.0	1.2	1	0	0	1	1	1	0	Glycine-rich	SFCGS
BD_b_sandwich	PF18820.1	gi|390937772|ref|YP_006401510.1|	-	0.045	13.7	0.1	0.063	13.3	0.1	1.3	1	0	0	1	1	1	0	Bdellovibrio	Beta-sandwich
SIS	PF01380.22	gi|390937773|ref|YP_006401511.1|	-	2.6e-43	147.0	0.1	7.9e-27	93.7	0.4	2.7	3	0	0	3	3	3	2	SIS	domain
GATase_6	PF13522.6	gi|390937773|ref|YP_006401511.1|	-	6.9e-22	78.1	0.0	1.3e-21	77.2	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|390937773|ref|YP_006401511.1|	-	2.8e-15	56.3	0.0	5.4e-15	55.4	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|390937773|ref|YP_006401511.1|	-	0.00021	21.3	0.2	0.0021	18.1	0.1	2.3	1	1	1	2	2	2	1	SIS	domain
bact-PGI_C	PF10432.9	gi|390937773|ref|YP_006401511.1|	-	0.015	15.3	0.1	0.11	12.6	0.0	2.4	2	1	0	2	2	2	0	Bacterial	phospho-glucose	isomerase	C-terminal	SIS	domain
GATase_4	PF13230.6	gi|390937773|ref|YP_006401511.1|	-	0.059	12.3	0.0	0.1	11.5	0.0	1.3	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
AA_kinase	PF00696.28	gi|390937774|ref|YP_006401512.1|	-	2e-18	66.9	0.0	3.5e-18	66.1	0.0	1.4	1	1	0	1	1	1	1	Amino	acid	kinase	family
ATPase_2	PF01637.18	gi|390937775|ref|YP_006401513.1|	-	2e-17	63.9	0.6	3.2e-17	63.2	0.6	1.3	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|390937775|ref|YP_006401513.1|	-	2.1e-08	34.2	0.6	0.00065	19.7	0.1	2.8	2	1	1	3	3	3	2	AAA	domain
AAA_16	PF13191.6	gi|390937775|ref|YP_006401513.1|	-	8.6e-06	26.2	0.1	3.6e-05	24.2	0.0	2.0	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|390937775|ref|YP_006401513.1|	-	0.0046	17.2	0.0	0.019	15.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|390937775|ref|YP_006401513.1|	-	0.02	15.3	0.0	0.053	13.9	0.0	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_assoc	PF14363.6	gi|390937775|ref|YP_006401513.1|	-	0.18	12.1	0.2	1	9.7	0.1	2.1	2	0	0	2	2	2	0	Domain	associated	at	C-terminal	with	AAA
adh_short_C2	PF13561.6	gi|390937776|ref|YP_006401514.1|	-	9e-43	146.5	0.0	1.4e-42	145.8	0.0	1.3	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|390937776|ref|YP_006401514.1|	-	8.1e-35	120.1	0.0	1.1e-34	119.7	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|390937776|ref|YP_006401514.1|	-	2.9e-08	33.8	0.0	5.6e-08	32.9	0.0	1.4	2	0	0	2	2	2	1	KR	domain
DUF1776	PF08643.10	gi|390937776|ref|YP_006401514.1|	-	0.015	14.7	0.0	0.019	14.3	0.0	1.2	1	0	0	1	1	1	0	Fungal	family	of	unknown	function	(DUF1776)
Glyco_transf_5	PF08323.11	gi|390937776|ref|YP_006401514.1|	-	0.25	11.0	0.0	0.58	9.8	0.0	1.5	2	0	0	2	2	2	0	Starch	synthase	catalytic	domain
SpoU_methylase	PF00588.19	gi|390937777|ref|YP_006401515.1|	-	6.4e-33	113.9	0.0	8.9e-33	113.4	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.9	gi|390937777|ref|YP_006401515.1|	-	5.9e-08	32.8	0.0	6.1e-06	26.2	0.0	2.2	1	1	0	1	1	1	1	SAM-dependent	RNA	methyltransferase
Methyltrn_RNA_3	PF02598.17	gi|390937777|ref|YP_006401515.1|	-	0.035	13.6	0.1	0.7	9.4	0.1	2.1	1	1	1	2	2	2	0	Putative	RNA	methyltransferase
MTS	PF05175.14	gi|390937778|ref|YP_006401516.1|	-	1.8e-14	53.6	0.0	7.1e-14	51.7	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|390937778|ref|YP_006401516.1|	-	8.9e-12	45.0	0.2	1.3e-11	44.5	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Cons_hypoth95	PF03602.15	gi|390937778|ref|YP_006401516.1|	-	2.1e-08	34.0	0.0	3e-08	33.5	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_25	PF13649.6	gi|390937778|ref|YP_006401516.1|	-	2.1e-06	28.4	0.0	3.1e-06	27.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|390937778|ref|YP_006401516.1|	-	2.6e-06	27.4	0.1	4.7e-06	26.6	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|390937778|ref|YP_006401516.1|	-	2.7e-05	24.0	0.0	3.2e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.16	gi|390937778|ref|YP_006401516.1|	-	7.2e-05	22.2	0.0	0.00011	21.6	0.0	1.3	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_11	PF08241.12	gi|390937778|ref|YP_006401516.1|	-	0.00011	22.8	0.0	0.0002	21.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|390937778|ref|YP_006401516.1|	-	0.0014	19.4	0.0	0.0023	18.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|390937778|ref|YP_006401516.1|	-	0.024	14.5	0.0	0.024	14.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_16	PF10294.9	gi|390937778|ref|YP_006401516.1|	-	0.03	14.1	0.3	0.045	13.5	0.3	1.3	1	0	0	1	1	1	0	Lysine	methyltransferase
TehB	PF03848.14	gi|390937778|ref|YP_006401516.1|	-	0.047	13.1	0.0	0.067	12.6	0.0	1.4	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
TRM	PF02005.16	gi|390937778|ref|YP_006401516.1|	-	0.059	12.5	0.0	0.085	12.0	0.0	1.2	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
UPF0020	PF01170.18	gi|390937778|ref|YP_006401516.1|	-	0.082	12.6	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_15	PF09445.10	gi|390937778|ref|YP_006401516.1|	-	0.13	11.8	0.0	0.22	11.1	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Met_10	PF02475.16	gi|390937778|ref|YP_006401516.1|	-	0.14	11.9	0.0	0.18	11.6	0.0	1.1	1	0	0	1	1	1	0	Met-10+	like-protein
RrnaAD	PF00398.20	gi|390937779|ref|YP_006401517.1|	-	1.4e-32	112.8	0.0	1.6e-32	112.6	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|390937779|ref|YP_006401517.1|	-	0.00022	21.8	0.0	0.00067	20.3	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|390937779|ref|YP_006401517.1|	-	0.0051	17.4	0.0	0.014	16.1	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|390937779|ref|YP_006401517.1|	-	0.013	15.0	0.0	0.024	14.1	0.0	1.4	1	0	0	1	1	1	0	Putative	methyltransferase
MTS	PF05175.14	gi|390937779|ref|YP_006401517.1|	-	0.03	13.9	0.0	0.05	13.2	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
NodS	PF05401.11	gi|390937779|ref|YP_006401517.1|	-	0.054	13.1	0.1	0.079	12.6	0.1	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
DUF655	PF04919.12	gi|390937780|ref|YP_006401518.1|	-	2.3e-61	206.9	1.4	2.8e-61	206.6	1.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.6	gi|390937780|ref|YP_006401518.1|	-	0.00022	21.4	0.3	0.00042	20.5	0.3	1.5	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|390937780|ref|YP_006401518.1|	-	0.0015	18.7	0.1	0.0035	17.6	0.1	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
RNA_pol_Rpb4	PF03874.16	gi|390937781|ref|YP_006401519.1|	-	2.1e-13	50.7	1.9	5.4e-13	49.4	1.9	1.6	1	1	0	1	1	1	1	RNA	polymerase	Rpb4
Rap1_C	PF11626.8	gi|390937781|ref|YP_006401519.1|	-	0.033	14.3	0.0	0.59	10.3	0.0	2.1	2	0	0	2	2	2	0	TRF2-interacting	telomeric	protein/Rap1	-	C	terminal	domain
Biotin_lipoyl	PF00364.22	gi|390937781|ref|YP_006401519.1|	-	0.035	13.9	0.0	0.27	11.1	0.0	2.1	2	0	0	2	2	2	0	Biotin-requiring	enzyme
HTH_37	PF13744.6	gi|390937781|ref|YP_006401519.1|	-	0.047	13.6	0.1	0.68	9.9	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF4111	PF13427.6	gi|390937781|ref|YP_006401519.1|	-	0.058	13.6	0.0	0.08	13.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4111)
Ribosomal_L21e	PF01157.18	gi|390937782|ref|YP_006401520.1|	-	3.8e-37	126.2	2.5	4.3e-37	126.0	2.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
THUMP	PF02926.17	gi|390937783|ref|YP_006401521.1|	-	4.4e-07	30.1	0.2	4.4e-07	30.1	0.2	2.6	2	1	1	3	3	3	1	THUMP	domain
SRP54	PF00448.22	gi|390937784|ref|YP_006401522.1|	-	1.5e-76	256.4	0.2	2.1e-76	256.0	0.2	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|390937784|ref|YP_006401522.1|	-	3.9e-26	91.6	0.0	1.2e-25	90.1	0.0	1.8	1	0	0	1	1	1	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|390937784|ref|YP_006401522.1|	-	3e-13	49.8	2.8	5.4e-13	49.0	0.0	2.8	3	0	0	3	3	2	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.23	gi|390937784|ref|YP_006401522.1|	-	2.1e-06	27.8	0.2	1.4e-05	25.2	0.1	2.3	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_33	PF13671.6	gi|390937784|ref|YP_006401522.1|	-	2.5e-05	24.5	0.0	5.4e-05	23.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
cobW	PF02492.19	gi|390937784|ref|YP_006401522.1|	-	2.7e-05	23.8	2.3	0.00079	19.1	2.3	2.3	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1	PF01926.23	gi|390937784|ref|YP_006401522.1|	-	7e-05	22.9	0.1	0.00019	21.5	0.1	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.12	gi|390937784|ref|YP_006401522.1|	-	7.1e-05	22.2	0.0	0.00015	21.1	0.0	1.6	1	0	0	1	1	1	1	Zeta	toxin
AAA_22	PF13401.6	gi|390937784|ref|YP_006401522.1|	-	0.00014	22.1	0.1	0.00089	19.5	0.0	2.2	3	0	0	3	3	2	1	AAA	domain
AAA_30	PF13604.6	gi|390937784|ref|YP_006401522.1|	-	0.00027	20.7	0.0	0.00066	19.4	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|390937784|ref|YP_006401522.1|	-	0.00047	20.6	0.3	0.00047	20.6	0.3	2.1	2	1	0	2	2	1	1	AAA	domain
ParA	PF10609.9	gi|390937784|ref|YP_006401522.1|	-	0.0017	17.8	0.0	0.0026	17.2	0.0	1.3	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
AAA_31	PF13614.6	gi|390937784|ref|YP_006401522.1|	-	0.0053	16.7	0.2	0.018	15.0	0.0	1.9	1	1	1	2	2	1	1	AAA	domain
APS_kinase	PF01583.20	gi|390937784|ref|YP_006401522.1|	-	0.0076	16.1	0.0	0.024	14.5	0.0	1.9	1	0	0	1	1	1	1	Adenylylsulphate	kinase
MobB	PF03205.14	gi|390937784|ref|YP_006401522.1|	-	0.011	15.7	0.1	0.023	14.6	0.1	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
PFOR_II	PF17147.4	gi|390937784|ref|YP_006401522.1|	-	0.013	15.8	0.0	0.27	11.6	0.0	2.5	2	0	0	2	2	2	0	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
MeaB	PF03308.16	gi|390937784|ref|YP_006401522.1|	-	0.014	14.4	0.0	0.025	13.5	0.0	1.5	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
6PF2K	PF01591.18	gi|390937784|ref|YP_006401522.1|	-	0.021	14.1	0.0	0.041	13.2	0.0	1.5	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
GTP_EFTU	PF00009.27	gi|390937784|ref|YP_006401522.1|	-	0.033	13.7	0.9	0.12	11.9	0.9	1.9	1	1	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
AAA_18	PF13238.6	gi|390937784|ref|YP_006401522.1|	-	0.039	14.5	0.2	0.11	13.0	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
MipZ	PF09140.11	gi|390937784|ref|YP_006401522.1|	-	0.042	13.1	0.2	2.6	7.2	0.0	2.4	1	1	1	2	2	2	0	ATPase	MipZ
Endonuc-PvuII	PF09225.10	gi|390937784|ref|YP_006401522.1|	-	0.045	13.5	0.2	1.8	8.3	0.1	2.5	2	0	0	2	2	2	0	Restriction	endonuclease	PvuII
AAA_24	PF13479.6	gi|390937784|ref|YP_006401522.1|	-	0.048	13.4	0.0	0.1	12.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|390937784|ref|YP_006401522.1|	-	0.051	14.0	0.0	0.16	12.4	0.0	1.9	1	0	0	1	1	1	0	AAA	ATPase	domain
ATPase	PF06745.13	gi|390937784|ref|YP_006401522.1|	-	0.054	12.8	0.3	0.17	11.2	0.3	1.9	1	1	0	1	1	1	0	KaiC
AAA_25	PF13481.6	gi|390937784|ref|YP_006401522.1|	-	0.054	13.1	0.4	0.24	10.9	0.6	2.1	2	1	0	2	2	2	0	AAA	domain
Clp_N	PF02861.20	gi|390937784|ref|YP_006401522.1|	-	0.081	13.1	0.4	13	6.0	0.0	2.7	2	0	0	2	2	2	0	Clp	amino	terminal	domain,	pathogenicity	island	component
ATP_bind_1	PF03029.17	gi|390937784|ref|YP_006401522.1|	-	0.081	12.7	0.0	0.26	11.0	0.0	1.9	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
PduV-EutP	PF10662.9	gi|390937784|ref|YP_006401522.1|	-	0.09	12.5	0.3	8	6.2	0.0	2.3	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
ABC_tran	PF00005.27	gi|390937784|ref|YP_006401522.1|	-	0.093	13.2	0.0	0.23	11.9	0.0	1.7	1	0	0	1	1	1	0	ABC	transporter
ResIII	PF04851.15	gi|390937784|ref|YP_006401522.1|	-	0.095	12.7	1.1	0.47	10.4	1.1	2.1	1	1	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
AAA	PF00004.29	gi|390937784|ref|YP_006401522.1|	-	0.11	13.0	0.7	0.85	10.1	0.7	2.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|390937784|ref|YP_006401522.1|	-	0.14	12.1	0.1	0.69	9.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_28	PF13521.6	gi|390937784|ref|YP_006401522.1|	-	0.18	12.1	0.2	0.58	10.4	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|390937784|ref|YP_006401522.1|	-	0.33	10.8	2.6	1.2	9.0	0.1	2.4	1	1	1	2	2	2	0	NTPase
Ribosomal_L16	PF00252.18	gi|390937785|ref|YP_006401523.1|	-	9.5e-36	122.7	0.1	1.1e-35	122.5	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
Diphthamide_syn	PF01866.17	gi|390937786|ref|YP_006401524.1|	-	1.5e-56	192.1	0.0	1.8e-56	191.8	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
PrmA	PF06325.13	gi|390937787|ref|YP_006401525.1|	-	0.00018	21.0	1.0	0.00029	20.3	0.6	1.4	1	1	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.6	gi|390937787|ref|YP_006401525.1|	-	0.0002	22.0	0.1	0.0011	19.6	0.1	2.0	1	1	1	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|390937787|ref|YP_006401525.1|	-	0.00053	19.6	0.0	0.00082	19.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.18	gi|390937787|ref|YP_006401525.1|	-	0.0091	15.7	0.0	0.023	14.4	0.0	1.7	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_11	PF08241.12	gi|390937787|ref|YP_006401525.1|	-	0.019	15.6	0.1	0.042	14.5	0.1	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
DUF43	PF01861.16	gi|390937787|ref|YP_006401525.1|	-	0.067	12.4	0.1	0.15	11.3	0.1	1.5	1	1	0	1	1	1	0	Branched-chain	polyamine	synthase	A	C-terminal	domain
Methyltransf_31	PF13847.6	gi|390937787|ref|YP_006401525.1|	-	0.1	12.4	0.4	0.18	11.6	0.4	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
FAE1_CUT1_RppA	PF08392.12	gi|390937787|ref|YP_006401525.1|	-	0.15	11.3	0.0	0.22	10.8	0.0	1.2	1	0	0	1	1	1	0	FAE1/Type	III	polyketide	synthase-like	protein
Prok-RING_1	PF14446.6	gi|390937788|ref|YP_006401526.1|	-	0.0017	18.3	0.7	0.0025	17.7	0.7	1.2	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
Auto_anti-p27	PF06677.12	gi|390937788|ref|YP_006401526.1|	-	0.0037	17.4	0.7	0.0059	16.7	0.7	1.3	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
ECR1_N	PF14382.6	gi|390937788|ref|YP_006401526.1|	-	0.008	16.0	0.0	0.023	14.5	0.0	1.8	1	0	0	1	1	1	1	Exosome	complex	exonuclease	RRP4	N-terminal	region
A2L_zn_ribbon	PF08792.10	gi|390937788|ref|YP_006401526.1|	-	0.013	15.1	2.5	0.025	14.3	2.5	1.4	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
DZR	PF12773.7	gi|390937788|ref|YP_006401526.1|	-	0.016	15.2	0.5	0.024	14.6	0.5	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF2318	PF10080.9	gi|390937788|ref|YP_006401526.1|	-	0.016	15.3	0.2	0.029	14.5	0.2	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
RNA_POL_M_15KD	PF02150.16	gi|390937788|ref|YP_006401526.1|	-	0.019	14.9	2.3	0.032	14.1	2.3	1.3	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.11	gi|390937788|ref|YP_006401526.1|	-	0.041	13.8	1.2	0.075	13.0	1.2	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
EXOSC1	PF10447.9	gi|390937788|ref|YP_006401526.1|	-	0.053	14.1	0.3	3.3	8.4	0.0	2.8	1	1	2	3	3	3	0	Exosome	component	EXOSC1/CSL4
zf-NADH-PPase	PF09297.11	gi|390937788|ref|YP_006401526.1|	-	0.069	12.8	0.8	0.15	11.7	0.8	1.6	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
GerPE	PF10970.8	gi|390937788|ref|YP_006401526.1|	-	0.079	13.1	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	Spore	germination	protein	GerPE
HypA	PF01155.19	gi|390937788|ref|YP_006401526.1|	-	0.15	12.1	0.9	0.24	11.4	0.9	1.6	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PHD	PF00628.29	gi|390937788|ref|YP_006401526.1|	-	0.21	11.5	1.1	0.32	10.9	1.1	1.2	1	0	0	1	1	1	0	PHD-finger
Nudix_N_2	PF14803.6	gi|390937788|ref|YP_006401526.1|	-	0.22	11.5	3.9	3.8	7.5	3.9	2.3	1	1	0	1	1	1	0	Nudix	N-terminal
zf-ribbon_3	PF13248.6	gi|390937788|ref|YP_006401526.1|	-	0.45	10.0	4.6	15	5.1	5.4	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|390937788|ref|YP_006401526.1|	-	0.56	10.0	3.2	1.3	8.9	3.2	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF2067	PF09840.9	gi|390937789|ref|YP_006401527.1|	-	1.2e-50	171.7	0.2	1.5e-50	171.4	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
BpuJI_N	PF11564.8	gi|390937789|ref|YP_006401527.1|	-	0.0074	15.5	0.0	0.0095	15.2	0.0	1.2	1	0	0	1	1	1	1	Restriction	endonuclease	BpuJI	-	N	terminal
RNA_pol_L_2	PF13656.6	gi|390937790|ref|YP_006401528.1|	-	1e-19	70.1	0.0	1.2e-19	69.9	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.24	gi|390937790|ref|YP_006401528.1|	-	0.011	15.1	0.0	0.016	14.7	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
TFIIS_C	PF01096.18	gi|390937792|ref|YP_006401530.1|	-	1.6e-19	69.5	4.7	1.6e-19	69.5	4.7	3.1	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|390937792|ref|YP_006401530.1|	-	9.4e-08	31.8	5.3	3e-05	23.8	0.3	3.1	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.11	gi|390937792|ref|YP_006401530.1|	-	1.4e-07	31.3	6.6	0.00095	19.0	0.1	2.8	2	1	1	3	3	3	2	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|390937792|ref|YP_006401530.1|	-	3e-07	30.3	8.1	0.001	19.0	1.3	2.4	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|390937792|ref|YP_006401530.1|	-	1.1e-05	25.0	14.0	0.54	10.1	0.0	4.2	4	0	0	4	4	4	3	zinc-ribbon	domain
DUF2387	PF09526.10	gi|390937792|ref|YP_006401530.1|	-	0.00022	21.3	3.2	0.36	11.0	0.0	2.3	2	0	0	2	2	2	2	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_4	PF13717.6	gi|390937792|ref|YP_006401530.1|	-	0.00026	20.8	8.9	0.53	10.3	0.4	4.2	4	0	0	4	4	4	2	zinc-ribbon	domain
DZR	PF12773.7	gi|390937792|ref|YP_006401530.1|	-	0.00082	19.3	7.4	0.43	10.6	8.1	3.0	1	1	0	1	1	1	1	Double	zinc	ribbon
IBR	PF01485.21	gi|390937792|ref|YP_006401530.1|	-	0.00095	19.3	5.7	0.13	12.5	0.2	3.0	2	1	1	3	3	3	1	IBR	domain,	a	half	RING-finger	domain
Nudix_N_2	PF14803.6	gi|390937792|ref|YP_006401530.1|	-	0.0011	18.8	9.2	0.034	14.1	1.3	3.5	3	1	0	3	3	3	1	Nudix	N-terminal
zf-ribbon_3	PF13248.6	gi|390937792|ref|YP_006401530.1|	-	0.0019	17.5	14.9	0.12	11.8	0.2	4.2	4	0	0	4	4	4	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|390937792|ref|YP_006401530.1|	-	0.0025	17.3	15.2	0.061	12.9	3.0	4.1	2	2	1	3	3	3	1	TFIIB	zinc-binding
YhfH	PF14149.6	gi|390937792|ref|YP_006401530.1|	-	0.0025	17.7	5.2	18	5.4	0.2	4.2	4	0	0	4	4	4	0	YhfH-like	protein
zf-C4_Topoisom	PF01396.19	gi|390937792|ref|YP_006401530.1|	-	0.0071	16.1	12.2	0.0084	15.9	1.3	2.9	3	0	0	3	3	3	1	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.10	gi|390937792|ref|YP_006401530.1|	-	0.019	15.0	13.3	6.9	6.9	0.1	4.2	3	1	0	4	4	4	0	Zinc	ribbon	domain
Lar_restr_allev	PF14354.6	gi|390937792|ref|YP_006401530.1|	-	0.038	14.4	11.1	1.2	9.6	1.6	3.0	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
HypA	PF01155.19	gi|390937792|ref|YP_006401530.1|	-	0.039	14.0	5.7	0.16	12.0	0.1	2.9	1	1	2	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_10	PF10058.9	gi|390937792|ref|YP_006401530.1|	-	0.05	13.3	0.7	0.05	13.3	0.7	3.0	2	2	0	3	3	3	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
TerY_C	PF15616.6	gi|390937792|ref|YP_006401530.1|	-	0.055	13.6	0.5	2.1	8.5	0.1	2.4	2	0	0	2	2	2	0	TerY-C	metal	binding	domain
zf-ZPR1	PF03367.13	gi|390937792|ref|YP_006401530.1|	-	0.057	13.3	1.7	0.89	9.4	0.1	2.7	3	0	0	3	3	3	0	ZPR1	zinc-finger	domain
zf-TFIIB	PF13453.6	gi|390937792|ref|YP_006401530.1|	-	0.063	12.6	1.0	0.063	12.6	1.0	3.1	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
zf_UBZ	PF18439.1	gi|390937792|ref|YP_006401530.1|	-	0.1	12.2	9.3	14	5.4	0.0	4.2	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
eIF-5_eIF-2B	PF01873.17	gi|390937792|ref|YP_006401530.1|	-	0.13	12.1	3.6	3.2	7.7	0.2	2.2	2	0	0	2	2	2	0	Domain	found	in	IF2B/IF5
Baculo_LEF5_C	PF11792.8	gi|390937792|ref|YP_006401530.1|	-	0.16	11.6	0.1	0.16	11.6	0.1	3.4	3	1	1	4	4	4	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
FdhE	PF04216.12	gi|390937792|ref|YP_006401530.1|	-	0.17	11.7	6.2	0.17	11.8	0.7	2.1	2	0	0	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
zinc_ribbon_13	PF09855.9	gi|390937792|ref|YP_006401530.1|	-	0.33	11.2	15.4	3.3	7.9	0.1	4.0	3	1	1	4	4	4	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zinc_ribbon_15	PF17032.5	gi|390937792|ref|YP_006401530.1|	-	0.33	11.7	7.5	0.47	11.2	1.8	3.1	1	1	0	2	2	2	0	zinc-ribbon	family
Rdx	PF10262.9	gi|390937792|ref|YP_006401530.1|	-	0.61	10.3	3.5	11	6.3	0.1	3.1	3	0	0	3	3	3	0	Rdx	family
DNA_RNApol_7kD	PF03604.13	gi|390937792|ref|YP_006401530.1|	-	0.86	9.3	10.9	15	5.4	0.3	3.8	3	1	1	4	4	4	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_9	PF14369.6	gi|390937792|ref|YP_006401530.1|	-	0.88	9.9	5.9	13	6.2	0.1	3.5	4	0	0	4	4	4	0	zinc-ribbon
zf-ACC	PF17848.1	gi|390937792|ref|YP_006401530.1|	-	1	9.5	13.8	9.3	6.4	0.3	4.0	4	0	0	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-IS66	PF13005.7	gi|390937792|ref|YP_006401530.1|	-	1.1	9.7	0.2	1.1	9.7	0.2	4.3	4	2	0	4	4	4	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_ligase_ZBD	PF03119.16	gi|390937792|ref|YP_006401530.1|	-	1.7	8.8	6.9	21	5.2	0.7	3.3	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
CpXC	PF14353.6	gi|390937792|ref|YP_006401530.1|	-	1.9	8.6	9.6	23	5.0	0.3	3.9	3	1	1	4	4	4	0	CpXC	protein
C1_1	PF00130.22	gi|390937792|ref|YP_006401530.1|	-	2.6	8.0	7.2	1.8	8.5	0.1	2.6	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
HalOD2	PF18547.1	gi|390937792|ref|YP_006401530.1|	-	2.9	7.9	10.2	6.6	6.7	0.0	3.4	4	0	0	4	4	4	0	Halobacterial	output	domain	2
zf_C2H2_10	PF18414.1	gi|390937792|ref|YP_006401530.1|	-	3.1	7.4	14.3	7	6.3	0.3	3.9	4	0	0	4	4	4	0	C2H2	type	zinc-finger
zf-Mss51	PF13824.6	gi|390937792|ref|YP_006401530.1|	-	4.8	7.4	14.1	6.2	7.0	0.3	3.8	2	2	0	3	3	3	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zinc-ribbons_6	PF07191.12	gi|390937792|ref|YP_006401530.1|	-	5.1	7.1	7.3	6.4	6.8	0.3	2.9	2	2	1	3	3	3	0	zinc-ribbons
DUF1272	PF06906.11	gi|390937792|ref|YP_006401530.1|	-	5.8	7.1	10.4	2.5	8.2	0.2	3.5	4	0	0	4	4	3	0	Protein	of	unknown	function	(DUF1272)
Zn_Tnp_IS91	PF14319.6	gi|390937792|ref|YP_006401530.1|	-	8.2	6.5	9.9	5.8	7.0	0.6	3.5	2	2	1	3	3	3	0	Transposase	zinc-binding	domain
zf_Rg	PF17915.1	gi|390937792|ref|YP_006401530.1|	-	8.5	5.9	10.8	0.12	11.8	0.9	2.5	3	0	0	3	3	2	0	Reverse	gyrase	zinc	finger
Ribosomal_L32p	PF01783.23	gi|390937792|ref|YP_006401530.1|	-	9.4	6.6	7.7	85	3.5	2.3	3.5	3	1	0	3	3	3	0	Ribosomal	L32p	protein	family
PCNA_N	PF00705.18	gi|390937793|ref|YP_006401531.1|	-	2.1e-14	53.3	0.0	9.4e-14	51.2	0.0	2.0	2	1	1	3	3	3	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|390937793|ref|YP_006401531.1|	-	3.6e-07	30.4	0.0	7.8e-07	29.3	0.0	1.6	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad1	PF02144.16	gi|390937793|ref|YP_006401531.1|	-	6.5e-05	22.1	0.1	0.00021	20.4	0.1	1.8	1	1	1	2	2	2	1	Repair	protein	Rad1/Rec1/Rad17
Rad9	PF04139.13	gi|390937793|ref|YP_006401531.1|	-	0.035	13.5	0.0	0.059	12.8	0.0	1.5	1	1	0	1	1	1	0	Rad9
DNA_primase_S	PF01896.19	gi|390937794|ref|YP_006401532.1|	-	1.5e-14	54.5	1.5	1.1e-12	48.4	0.1	2.4	2	1	0	2	2	2	2	DNA	primase	small	subunit
MscS_TM	PF12794.7	gi|390937796|ref|YP_006401534.1|	-	0.06	12.2	6.7	0.087	11.7	6.7	1.3	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	inner	membrane	domain	1
DUF515	PF04415.12	gi|390937796|ref|YP_006401534.1|	-	0.32	9.4	1.4	0.39	9.1	0.2	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF515)
Nop10p	PF04135.12	gi|390937797|ref|YP_006401535.1|	-	4e-22	78.0	0.9	4.9e-22	77.7	0.9	1.1	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
DUF35_N	PF12172.8	gi|390937797|ref|YP_006401535.1|	-	0.0013	18.5	0.4	0.0013	18.5	0.4	1.6	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF1258	PF06869.12	gi|390937797|ref|YP_006401535.1|	-	0.0087	15.6	0.0	0.0088	15.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1258)
RecR	PF02132.15	gi|390937797|ref|YP_006401535.1|	-	0.016	14.7	0.8	0.031	13.8	0.8	1.4	1	0	0	1	1	1	0	RecR	protein
DUF1272	PF06906.11	gi|390937797|ref|YP_006401535.1|	-	0.029	14.4	1.4	0.039	14.0	1.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Ribosomal_L32p	PF01783.23	gi|390937797|ref|YP_006401535.1|	-	0.056	13.7	2.1	0.11	12.8	2.1	1.5	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
A2L_zn_ribbon	PF08792.10	gi|390937797|ref|YP_006401535.1|	-	0.08	12.7	1.8	8.8	6.2	0.0	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|390937797|ref|YP_006401535.1|	-	0.2	11.1	5.4	0.87	9.1	5.4	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-tcix	PF14952.6	gi|390937797|ref|YP_006401535.1|	-	7.8	6.2	8.7	50	3.6	8.7	2.0	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
EIF_2_alpha	PF07541.12	gi|390937798|ref|YP_006401536.1|	-	1.3e-22	80.1	0.4	5.5e-22	78.0	0.0	2.0	2	0	0	2	2	2	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|390937798|ref|YP_006401536.1|	-	1.5e-12	47.7	0.2	3.4e-12	46.5	0.2	1.6	1	0	0	1	1	1	1	S1	RNA	binding	domain
DUF1075	PF06388.11	gi|390937798|ref|YP_006401536.1|	-	0.055	13.5	1.2	0.091	12.8	0.5	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1075)
DUF4364	PF14277.6	gi|390937798|ref|YP_006401536.1|	-	0.11	12.2	2.3	1.8	8.3	1.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4364)
S1_2	PF13509.6	gi|390937798|ref|YP_006401536.1|	-	0.11	12.5	0.0	0.23	11.6	0.0	1.5	1	0	0	1	1	1	0	S1	domain
Ras_bdg_2	PF14847.6	gi|390937798|ref|YP_006401536.1|	-	0.26	11.7	2.1	3.9	7.9	0.0	2.4	2	0	0	2	2	2	0	Ras-binding	domain	of	Byr2
SpoVAC_SpoVAEB	PF03862.13	gi|390937799|ref|YP_006401537.1|	-	1.4	9.2	9.1	1.4	9.2	5.6	2.9	2	0	0	2	2	2	0	SpoVAC/SpoVAEB	sporulation	membrane	protein
Cdc6_C	PF09079.11	gi|390937801|ref|YP_006401539.1|	-	4.4e-18	65.0	0.4	1.1e-17	63.7	0.2	1.8	2	0	0	2	2	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|390937801|ref|YP_006401539.1|	-	7.7e-13	48.9	0.0	1.6e-12	47.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|390937801|ref|YP_006401539.1|	-	1.1e-08	35.6	0.3	2.2e-07	31.4	0.1	2.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_24	PF13479.6	gi|390937801|ref|YP_006401539.1|	-	4.8e-07	29.7	0.0	1e-06	28.6	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
TniB	PF05621.11	gi|390937801|ref|YP_006401539.1|	-	8.1e-06	25.4	0.0	1.3e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
NACHT	PF05729.12	gi|390937801|ref|YP_006401539.1|	-	5.2e-05	23.2	0.0	9.8e-05	22.3	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
NB-ARC	PF00931.22	gi|390937801|ref|YP_006401539.1|	-	9.8e-05	21.7	0.0	0.00021	20.6	0.0	1.6	1	0	0	1	1	1	1	NB-ARC	domain
ATPase_2	PF01637.18	gi|390937801|ref|YP_006401539.1|	-	0.00015	21.7	1.7	0.00045	20.2	0.2	2.5	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
TsaE	PF02367.17	gi|390937801|ref|YP_006401539.1|	-	0.001	19.1	0.0	0.0023	17.9	0.0	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA	PF00004.29	gi|390937801|ref|YP_006401539.1|	-	0.0013	19.1	0.0	0.0031	17.9	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TIP49_C	PF17856.1	gi|390937801|ref|YP_006401539.1|	-	0.0024	18.0	0.4	3.7	7.7	0.2	2.6	2	0	0	2	2	2	2	TIP49	AAA-lid	domain
ABC_tran	PF00005.27	gi|390937801|ref|YP_006401539.1|	-	0.0045	17.5	0.0	0.013	16.0	0.0	1.7	1	0	0	1	1	1	1	ABC	transporter
AAA_7	PF12775.7	gi|390937801|ref|YP_006401539.1|	-	0.0049	16.4	0.0	0.011	15.3	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
MMR_HSR1	PF01926.23	gi|390937801|ref|YP_006401539.1|	-	0.0064	16.6	0.0	0.019	15.1	0.0	1.9	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Roc	PF08477.13	gi|390937801|ref|YP_006401539.1|	-	0.014	15.6	0.1	0.062	13.5	0.0	2.0	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
ATPase	PF06745.13	gi|390937801|ref|YP_006401539.1|	-	0.016	14.5	0.2	0.073	12.4	0.0	2.0	2	0	0	2	2	2	0	KaiC
AAA_14	PF13173.6	gi|390937801|ref|YP_006401539.1|	-	0.021	14.9	0.1	0.064	13.3	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
ResIII	PF04851.15	gi|390937801|ref|YP_006401539.1|	-	0.027	14.5	0.1	0.64	10.0	0.0	2.3	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Bac_DnaA	PF00308.18	gi|390937801|ref|YP_006401539.1|	-	0.033	14.0	0.1	0.25	11.1	0.0	2.0	2	0	0	2	2	2	0	Bacterial	dnaA	protein
PduV-EutP	PF10662.9	gi|390937801|ref|YP_006401539.1|	-	0.04	13.7	0.1	0.12	12.1	0.1	1.8	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_30	PF13604.6	gi|390937801|ref|YP_006401539.1|	-	0.043	13.5	0.0	0.084	12.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|390937801|ref|YP_006401539.1|	-	0.086	12.8	0.3	0.32	11.0	0.0	2.1	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.6	gi|390937801|ref|YP_006401539.1|	-	0.088	12.6	0.0	0.2	11.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Ocnus	PF05005.15	gi|390937801|ref|YP_006401539.1|	-	0.1	12.8	0.0	0.29	11.3	0.0	1.7	1	0	0	1	1	1	0	Janus/Ocnus	family	(Ocnus)
FtsK_SpoIIIE	PF01580.18	gi|390937801|ref|YP_006401539.1|	-	0.1	11.9	0.0	0.19	11.1	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_18	PF13238.6	gi|390937801|ref|YP_006401539.1|	-	0.1	13.1	0.0	0.24	11.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|390937801|ref|YP_006401539.1|	-	0.27	11.7	1.9	0.89	10.0	1.9	2.2	1	1	0	1	1	1	0	AAA	domain
ASCH	PF04266.14	gi|390937802|ref|YP_006401540.1|	-	2.3e-14	53.8	0.2	3.6e-14	53.2	0.2	1.3	1	0	0	1	1	1	1	ASCH	domain
DUF4065	PF13274.6	gi|390937802|ref|YP_006401540.1|	-	0.099	13.5	0.1	0.18	12.7	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4065)
PCI	PF01399.27	gi|390937802|ref|YP_006401540.1|	-	0.1	13.1	0.1	0.2	12.2	0.0	1.6	1	1	0	1	1	1	0	PCI	domain
Tox-REase-5	PF15648.6	gi|390937802|ref|YP_006401540.1|	-	0.1	13.1	0.0	0.15	12.5	0.0	1.2	1	0	0	1	1	1	0	Restriction	endonuclease	fold	toxin	5
PaREP1	PF05942.11	gi|390937802|ref|YP_006401540.1|	-	0.11	12.5	0.1	1.2	9.1	0.0	2.1	2	0	0	2	2	2	0	Archaeal	PaREP1/PaREP8	family
HTH_5	PF01022.20	gi|390937803|ref|YP_006401541.1|	-	2.6e-11	43.2	0.1	4.1e-11	42.6	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|390937803|ref|YP_006401541.1|	-	0.0025	17.8	0.2	0.0037	17.2	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|390937803|ref|YP_006401541.1|	-	0.0026	17.5	0.6	0.014	15.2	0.1	2.0	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_20	PF12840.7	gi|390937803|ref|YP_006401541.1|	-	0.0042	17.1	0.0	0.0067	16.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|390937803|ref|YP_006401541.1|	-	0.014	15.3	0.1	0.022	14.6	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|390937803|ref|YP_006401541.1|	-	0.057	13.3	0.0	0.099	12.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
NAC	PF01849.18	gi|390937803|ref|YP_006401541.1|	-	0.15	12.1	0.0	0.28	11.2	0.0	1.5	1	0	0	1	1	1	0	NAC	domain
Fer4_6	PF12837.7	gi|390937804|ref|YP_006401542.1|	-	1.6e-11	43.8	12.8	1e-05	25.4	4.0	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|390937804|ref|YP_006401542.1|	-	1.7e-10	40.3	13.1	1.7e-06	27.8	2.0	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|390937804|ref|YP_006401542.1|	-	2.7e-10	39.6	15.5	1.1e-07	31.4	1.9	3.0	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|390937804|ref|YP_006401542.1|	-	8.8e-09	35.3	10.2	7.6e-07	29.2	11.6	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|390937804|ref|YP_006401542.1|	-	8.5e-08	32.2	9.2	1.1e-07	31.9	9.2	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|390937804|ref|YP_006401542.1|	-	3.6e-07	30.7	23.0	8e-06	26.4	12.4	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|390937804|ref|YP_006401542.1|	-	1.4e-06	28.3	10.6	0.00032	21.0	1.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|390937804|ref|YP_006401542.1|	-	1.2e-05	25.3	9.7	2.7e-05	24.2	9.9	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|390937804|ref|YP_006401542.1|	-	0.0013	19.6	11.4	0.23	12.4	2.1	2.1	1	1	2	3	3	3	3	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|390937804|ref|YP_006401542.1|	-	0.0018	18.8	7.5	0.049	14.2	0.6	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|390937804|ref|YP_006401542.1|	-	0.0078	16.7	11.0	0.16	12.5	11.0	2.1	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_22	PF17179.4	gi|390937804|ref|YP_006401542.1|	-	0.13	13.2	6.1	0.21	12.5	0.3	2.1	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|390937804|ref|YP_006401542.1|	-	0.29	11.6	13.6	0.31	11.5	3.0	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|390937804|ref|YP_006401542.1|	-	0.6	10.9	8.3	5.7	7.7	8.3	2.3	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.7	gi|390937804|ref|YP_006401542.1|	-	0.63	11.1	16.6	4.5	8.5	4.6	2.7	2	1	0	2	2	2	0	4Fe-4S	binding	domain
DUF3079	PF11278.8	gi|390937804|ref|YP_006401542.1|	-	1.1	9.1	8.8	0.33	10.8	1.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3079)
ABC_tran	PF00005.27	gi|390937806|ref|YP_006401544.1|	-	4.3e-30	105.0	0.0	6.1e-30	104.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390937806|ref|YP_006401544.1|	-	3.6e-11	43.4	4.3	2.6e-05	24.2	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|390937806|ref|YP_006401544.1|	-	2.7e-05	24.6	0.1	4.2e-05	24.0	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|390937806|ref|YP_006401544.1|	-	0.00017	21.4	0.0	0.00047	20.0	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|390937806|ref|YP_006401544.1|	-	0.0005	19.7	0.0	0.001	18.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|390937806|ref|YP_006401544.1|	-	0.00076	20.0	0.0	0.0014	19.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|390937806|ref|YP_006401544.1|	-	0.0012	19.2	2.6	0.022	15.1	2.6	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|390937806|ref|YP_006401544.1|	-	0.0017	17.8	0.6	0.014	14.9	0.0	2.0	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Mg_chelatase	PF01078.21	gi|390937806|ref|YP_006401544.1|	-	0.0018	17.7	0.0	0.0027	17.1	0.0	1.2	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|390937806|ref|YP_006401544.1|	-	0.0024	17.6	0.0	0.0071	16.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|390937806|ref|YP_006401544.1|	-	0.0033	17.4	0.1	0.029	14.4	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
ABC_ATPase	PF09818.9	gi|390937806|ref|YP_006401544.1|	-	0.01	14.7	0.4	1.2	7.8	0.1	2.4	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
NACHT	PF05729.12	gi|390937806|ref|YP_006401544.1|	-	0.012	15.5	0.0	0.021	14.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.6	gi|390937806|ref|YP_006401544.1|	-	0.015	15.4	0.0	0.027	14.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|390937806|ref|YP_006401544.1|	-	0.025	14.2	0.6	0.069	12.7	0.2	1.9	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_24	PF13479.6	gi|390937806|ref|YP_006401544.1|	-	0.029	14.1	0.1	0.044	13.5	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
DLIC	PF05783.11	gi|390937806|ref|YP_006401544.1|	-	0.03	13.2	0.1	0.044	12.6	0.1	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
AAA_19	PF13245.6	gi|390937806|ref|YP_006401544.1|	-	0.034	14.5	0.2	0.056	13.8	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
PRK	PF00485.18	gi|390937806|ref|YP_006401544.1|	-	0.036	13.8	0.0	0.092	12.5	0.0	1.6	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA	PF00004.29	gi|390937806|ref|YP_006401544.1|	-	0.036	14.5	0.3	0.19	12.2	0.3	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|390937806|ref|YP_006401544.1|	-	0.04	13.1	0.0	0.073	12.2	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
ATP_bind_1	PF03029.17	gi|390937806|ref|YP_006401544.1|	-	0.055	13.2	0.1	0.1	12.4	0.1	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
ATPase_2	PF01637.18	gi|390937806|ref|YP_006401544.1|	-	0.063	13.2	0.0	0.086	12.7	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_25	PF13481.6	gi|390937806|ref|YP_006401544.1|	-	0.067	12.8	0.0	0.14	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DEAD	PF00270.29	gi|390937806|ref|YP_006401544.1|	-	0.072	12.9	0.0	0.13	12.0	0.0	1.7	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
RsgA_GTPase	PF03193.16	gi|390937806|ref|YP_006401544.1|	-	0.072	13.0	0.0	0.18	11.7	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
RNA12	PF10443.9	gi|390937806|ref|YP_006401544.1|	-	0.092	11.5	0.0	0.12	11.1	0.0	1.2	1	0	0	1	1	1	0	RNA12	protein
AAA_5	PF07728.14	gi|390937806|ref|YP_006401544.1|	-	0.14	12.2	0.1	1.4	8.9	0.0	2.4	2	1	1	3	3	3	0	AAA	domain	(dynein-related	subfamily)
SRP54	PF00448.22	gi|390937806|ref|YP_006401544.1|	-	0.14	11.8	0.1	0.25	11.0	0.1	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.12	gi|390937806|ref|YP_006401544.1|	-	0.15	11.3	0.0	0.26	10.5	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
FecCD	PF01032.18	gi|390937807|ref|YP_006401545.1|	-	3.5e-78	262.7	37.4	4.3e-78	262.5	37.4	1.0	1	0	0	1	1	1	1	FecCD	transport	family
Peripla_BP_2	PF01497.18	gi|390937808|ref|YP_006401546.1|	-	1.1e-16	61.1	0.0	1.5e-16	60.7	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
InaF-motif	PF15018.6	gi|390937808|ref|YP_006401546.1|	-	0.052	13.4	1.0	0.14	12.1	1.0	1.7	1	0	0	1	1	1	0	TRP-interacting	helix
FmdE	PF02663.14	gi|390937809|ref|YP_006401547.1|	-	1.2e-37	128.9	0.0	1.6e-37	128.5	0.0	1.1	1	0	0	1	1	1	1	FmdE,	Molybdenum	formylmethanofuran	dehydrogenase	operon
zf-dskA_traR	PF01258.17	gi|390937809|ref|YP_006401547.1|	-	1.7e-09	37.5	1.1	3.2e-09	36.6	1.1	1.4	1	0	0	1	1	1	1	Prokaryotic	dksA/traR	C4-type	zinc	finger
LIM	PF00412.22	gi|390937809|ref|YP_006401547.1|	-	0.13	12.5	0.2	0.29	11.4	0.2	1.5	1	0	0	1	1	1	0	LIM	domain
Peptidase_S24	PF00717.23	gi|390937810|ref|YP_006401548.1|	-	3.5e-11	42.9	0.4	6e-11	42.1	0.4	1.4	1	0	0	1	1	1	1	Peptidase	S24-like
HypA	PF01155.19	gi|390937811|ref|YP_006401549.1|	-	0.0024	17.9	0.3	0.8	9.7	0.1	2.2	2	0	0	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|390937811|ref|YP_006401549.1|	-	0.003	17.4	4.2	0.87	9.5	0.8	2.3	2	0	0	2	2	2	2	Transcription	factor	S-II	(TFIIS)
zf-IS66	PF13005.7	gi|390937811|ref|YP_006401549.1|	-	0.0079	16.6	0.7	0.018	15.4	0.7	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
Zn-ribbon_8	PF09723.10	gi|390937811|ref|YP_006401549.1|	-	0.011	15.9	1.3	0.2	11.8	0.2	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_13	PF09855.9	gi|390937811|ref|YP_006401549.1|	-	0.011	15.9	2.3	0.077	13.2	2.3	2.0	1	1	0	1	1	1	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
DNA_RNApol_7kD	PF03604.13	gi|390937811|ref|YP_006401549.1|	-	0.012	15.2	2.6	0.5	10.1	0.5	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|390937811|ref|YP_006401549.1|	-	0.013	14.9	3.1	0.27	10.7	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|390937811|ref|YP_006401549.1|	-	0.014	15.7	0.1	0.026	14.9	0.1	1.5	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_4	PF13717.6	gi|390937811|ref|YP_006401549.1|	-	0.017	15.0	4.7	0.44	10.5	0.3	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.6	gi|390937811|ref|YP_006401549.1|	-	0.02	14.7	2.7	0.61	9.9	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
GcpE	PF04551.14	gi|390937811|ref|YP_006401549.1|	-	0.028	13.5	0.2	0.034	13.2	0.2	1.1	1	0	0	1	1	1	0	GcpE	protein
YokU	PF14122.6	gi|390937811|ref|YP_006401549.1|	-	0.031	14.3	0.2	0.052	13.5	0.2	1.5	1	1	0	1	1	1	0	YokU-like	protein,	putative	antitoxin
Elf1	PF05129.13	gi|390937811|ref|YP_006401549.1|	-	0.031	14.3	0.2	0.065	13.3	0.2	1.5	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Mu-like_Com	PF10122.9	gi|390937811|ref|YP_006401549.1|	-	0.042	13.3	1.7	1.4	8.4	0.1	2.2	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
UPF0547	PF10571.9	gi|390937811|ref|YP_006401549.1|	-	0.064	13.3	3.6	0.66	10.1	0.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
RNA_POL_M_15KD	PF02150.16	gi|390937811|ref|YP_006401549.1|	-	0.11	12.4	1.7	2.9	7.9	0.1	2.3	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1595	PF12760.7	gi|390937811|ref|YP_006401549.1|	-	0.17	11.9	3.2	1.1	9.3	3.3	1.9	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF35_N	PF12172.8	gi|390937811|ref|YP_006401549.1|	-	0.24	11.3	2.7	0.97	9.4	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TF_Zn_Ribbon	PF08271.12	gi|390937811|ref|YP_006401549.1|	-	0.27	10.8	0.1	0.27	10.8	0.1	2.5	3	0	0	3	3	3	0	TFIIB	zinc-binding
zf-tcix	PF14952.6	gi|390937811|ref|YP_006401549.1|	-	0.87	9.3	6.5	2.9	7.6	0.6	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zinc_ribbon_2	PF13240.6	gi|390937811|ref|YP_006401549.1|	-	1.3	8.8	8.1	6.2	6.7	2.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Enolase_C	PF00113.22	gi|390937813|ref|YP_006401551.1|	-	1.4e-115	385.6	0.0	1.9e-115	385.2	0.0	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|390937813|ref|YP_006401551.1|	-	2.3e-53	179.8	0.2	4.2e-53	179.0	0.2	1.4	1	0	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|390937813|ref|YP_006401551.1|	-	3.5e-08	33.3	0.0	5.6e-08	32.6	0.0	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MAAL_C	PF07476.11	gi|390937813|ref|YP_006401551.1|	-	0.00036	19.8	0.0	0.00061	19.0	0.0	1.4	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
DHHC	PF01529.20	gi|390937814|ref|YP_006401552.1|	-	0.3	11.2	3.4	0.32	11.1	3.4	1.2	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
DUF2721	PF11026.8	gi|390937814|ref|YP_006401552.1|	-	1.4	8.8	7.4	2.5	8.0	6.6	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2721)
AA_kinase	PF00696.28	gi|390937815|ref|YP_006401553.1|	-	1e-27	97.3	0.0	1.2e-27	97.1	0.0	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
DUF4276	PF14103.6	gi|390937815|ref|YP_006401553.1|	-	0.052	13.8	0.0	0.086	13.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4276)
DUF4505	PF14956.6	gi|390937815|ref|YP_006401553.1|	-	0.063	13.0	0.0	0.092	12.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4505)
GT87	PF09594.10	gi|390937816|ref|YP_006401554.1|	-	1.4e-07	31.5	27.3	1.9e-07	31.0	23.4	2.5	2	0	0	2	2	2	1	Glycosyltransferase	family	87
Aldedh	PF00171.22	gi|390937817|ref|YP_006401555.1|	-	4.6e-120	401.3	0.0	5.2e-120	401.1	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.14	gi|390937817|ref|YP_006401555.1|	-	0.00069	18.8	0.0	0.0026	16.9	0.0	1.8	1	1	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
Rubrerythrin	PF02915.17	gi|390937818|ref|YP_006401556.1|	-	4.8e-30	104.8	3.2	5.9e-30	104.5	3.2	1.1	1	0	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.24	gi|390937818|ref|YP_006401556.1|	-	3.2e-05	23.9	1.3	0.0002	21.3	1.3	1.9	1	1	0	1	1	1	1	Ferritin-like	domain
zf-RRN7	PF11781.8	gi|390937818|ref|YP_006401556.1|	-	0.012	15.3	1.9	1.2	8.8	0.2	2.3	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DZR	PF12773.7	gi|390937818|ref|YP_006401556.1|	-	0.019	15.0	0.1	0.028	14.4	0.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-Sec23_Sec24	PF04810.15	gi|390937818|ref|YP_006401556.1|	-	0.021	14.9	0.9	0.27	11.3	0.1	2.2	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
zf-ribbon_3	PF13248.6	gi|390937818|ref|YP_006401556.1|	-	0.063	12.7	2.6	3.2	7.3	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.19	gi|390937818|ref|YP_006401556.1|	-	0.07	13.2	0.3	0.15	12.1	0.3	1.7	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF3039	PF11238.8	gi|390937818|ref|YP_006401556.1|	-	0.072	12.9	1.1	0.15	11.8	1.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3039)
zf-MIZ	PF02891.20	gi|390937818|ref|YP_006401556.1|	-	0.17	11.7	2.5	0.55	10.0	0.1	2.3	2	0	0	2	2	2	0	MIZ/SP-RING	zinc	finger
RecR	PF02132.15	gi|390937818|ref|YP_006401556.1|	-	0.18	11.4	0.4	0.38	10.3	0.4	1.5	1	0	0	1	1	1	0	RecR	protein
Cys_rich_CPCC	PF14206.6	gi|390937818|ref|YP_006401556.1|	-	0.27	11.1	1.7	0.56	10.1	1.7	1.5	1	0	0	1	1	1	0	Cysteine-rich	CPCC
PhnA_Zn_Ribbon	PF08274.12	gi|390937818|ref|YP_006401556.1|	-	0.31	11.0	2.2	0.61	10.1	0.0	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Zn-C2H2_12	PF18112.1	gi|390937818|ref|YP_006401556.1|	-	0.4	11.2	3.3	8.3	7.0	0.2	2.5	2	0	0	2	2	2	0	Autophagy	receptor	zinc	finger-C2H2	domain
DNA_ligase_ZBD	PF03119.16	gi|390937818|ref|YP_006401556.1|	-	0.52	10.4	4.8	6.9	6.8	0.3	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Rubredoxin_2	PF18073.1	gi|390937818|ref|YP_006401556.1|	-	0.67	9.7	2.4	6.6	6.5	0.3	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
ADK_lid	PF05191.14	gi|390937818|ref|YP_006401556.1|	-	0.89	9.6	3.5	2.3	8.3	3.5	1.7	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
TF_Zn_Ribbon	PF08271.12	gi|390937818|ref|YP_006401556.1|	-	0.98	9.0	6.8	1.5	8.4	3.1	2.4	2	1	1	3	3	3	0	TFIIB	zinc-binding
Rubredoxin	PF00301.20	gi|390937818|ref|YP_006401556.1|	-	1	9.5	7.5	7.8	6.6	0.9	2.6	2	1	2	4	4	3	0	Rubredoxin
Zn-ribbon_8	PF09723.10	gi|390937818|ref|YP_006401556.1|	-	2	8.6	5.5	23	5.2	5.2	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
TP_methylase	PF00590.20	gi|390937819|ref|YP_006401557.1|	-	5.6e-22	78.7	0.0	6.6e-22	78.5	0.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
ABC_tran	PF00005.27	gi|390937820|ref|YP_006401558.1|	-	1.9e-23	83.5	0.1	2.5e-23	83.1	0.1	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390937820|ref|YP_006401558.1|	-	2.3e-15	57.2	0.7	1.2e-07	31.9	0.3	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|390937820|ref|YP_006401558.1|	-	1.1e-09	38.5	0.0	2.6e-05	24.1	0.0	2.1	1	1	1	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|390937820|ref|YP_006401558.1|	-	5.2e-07	29.3	0.0	0.0085	15.5	0.0	2.5	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|390937820|ref|YP_006401558.1|	-	3e-05	24.5	0.0	4.3e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|390937820|ref|YP_006401558.1|	-	4.5e-05	24.1	0.0	5.5e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|390937820|ref|YP_006401558.1|	-	0.00034	19.6	0.0	0.00051	19.0	0.0	1.2	1	0	0	1	1	1	1	Predicted	ATPase	of	the	ABC	class
AAA_29	PF13555.6	gi|390937820|ref|YP_006401558.1|	-	0.00058	19.6	0.0	0.0011	18.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|390937820|ref|YP_006401558.1|	-	0.0046	17.4	0.1	0.029	14.8	0.1	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.6	gi|390937820|ref|YP_006401558.1|	-	0.0053	16.8	0.1	0.22	11.5	0.0	2.4	1	1	1	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|390937820|ref|YP_006401558.1|	-	0.006	17.1	0.0	0.016	15.7	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|390937820|ref|YP_006401558.1|	-	0.0092	16.3	0.0	0.018	15.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|390937820|ref|YP_006401558.1|	-	0.012	15.6	0.2	0.05	13.5	0.1	1.9	2	1	0	2	2	2	0	Rad17	P-loop	domain
DEAD	PF00270.29	gi|390937820|ref|YP_006401558.1|	-	0.013	15.3	0.1	0.03	14.1	0.1	1.5	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
AAA_27	PF13514.6	gi|390937820|ref|YP_006401558.1|	-	0.015	14.9	0.0	0.025	14.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
DUF2813	PF11398.8	gi|390937820|ref|YP_006401558.1|	-	0.017	14.4	0.0	0.028	13.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2813)
AAA_28	PF13521.6	gi|390937820|ref|YP_006401558.1|	-	0.022	15.0	0.1	0.033	14.4	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|390937820|ref|YP_006401558.1|	-	0.023	14.8	0.0	0.074	13.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_PrkA	PF08298.11	gi|390937820|ref|YP_006401558.1|	-	0.027	13.4	0.0	0.039	12.9	0.0	1.2	1	0	0	1	1	1	0	PrkA	AAA	domain
TsaE	PF02367.17	gi|390937820|ref|YP_006401558.1|	-	0.034	14.2	0.1	0.063	13.3	0.1	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_25	PF13481.6	gi|390937820|ref|YP_006401558.1|	-	0.11	12.0	0.0	0.2	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF3584	PF12128.8	gi|390937820|ref|YP_006401558.1|	-	0.23	9.0	0.0	0.3	8.5	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
FecCD	PF01032.18	gi|390937821|ref|YP_006401559.1|	-	6.1e-59	199.6	31.2	7.4e-59	199.3	31.2	1.0	1	0	0	1	1	1	1	FecCD	transport	family
Peripla_BP_2	PF01497.18	gi|390937822|ref|YP_006401560.1|	-	9.9e-18	64.6	0.0	1.4e-17	64.1	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
Isochorismatase	PF00857.20	gi|390937824|ref|YP_006401562.1|	-	5.6e-43	147.1	0.0	6.1e-43	147.0	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
ELFV_dehydrog	PF00208.21	gi|390937825|ref|YP_006401563.1|	-	2.7e-74	250.0	0.1	3.4e-74	249.6	0.1	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|390937825|ref|YP_006401563.1|	-	5.3e-50	168.7	0.0	9.8e-50	167.8	0.0	1.5	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|390937825|ref|YP_006401563.1|	-	0.00011	21.7	0.1	0.00023	20.6	0.1	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|390937825|ref|YP_006401563.1|	-	0.0035	17.4	0.5	0.051	13.7	0.2	2.2	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Bac_GDH	PF05088.12	gi|390937825|ref|YP_006401563.1|	-	0.0053	14.3	0.0	0.0071	13.9	0.0	1.1	1	0	0	1	1	1	1	Bacterial	NAD-glutamate	dehydrogenase
NAD_binding_7	PF13241.6	gi|390937825|ref|YP_006401563.1|	-	0.0096	16.3	0.1	0.02	15.3	0.1	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
DUF3158	PF11358.8	gi|390937825|ref|YP_006401563.1|	-	0.013	15.2	0.0	0.074	12.8	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3158)
ThiF	PF00899.21	gi|390937825|ref|YP_006401563.1|	-	0.064	12.6	0.0	0.13	11.6	0.0	1.4	1	0	0	1	1	1	0	ThiF	family
MJ1316	PF04457.12	gi|390937826|ref|YP_006401564.1|	-	6.9e-06	26.7	0.3	8.3e-06	26.5	0.3	1.1	1	0	0	1	1	1	1	MJ1316	RNA	cyclic	group	end	recognition	domain
Phage_holin_3_6	PF07332.11	gi|390937827|ref|YP_006401565.1|	-	0.027	14.5	0.4	0.031	14.3	0.4	1.0	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
PsbI	PF02532.14	gi|390937827|ref|YP_006401565.1|	-	1.4	8.9	11.3	0.14	12.1	5.2	2.1	2	0	0	2	2	2	0	Photosystem	II	reaction	centre	I	protein	(PSII	4.8	kDa	protein)
polyprenyl_synt	PF00348.17	gi|390937828|ref|YP_006401566.1|	-	1.2e-53	181.9	0.0	1.6e-53	181.4	0.0	1.2	1	0	0	1	1	1	1	Polyprenyl	synthetase
CNOT11	PF10155.9	gi|390937828|ref|YP_006401566.1|	-	0.013	15.7	0.1	0.028	14.6	0.1	1.5	1	0	0	1	1	1	0	CCR4-NOT	transcription	complex	subunit	11
GcpE	PF04551.14	gi|390937828|ref|YP_006401566.1|	-	0.1	11.6	0.0	0.17	11.0	0.0	1.2	1	0	0	1	1	1	0	GcpE	protein
PIN_6	PF17146.4	gi|390937828|ref|YP_006401566.1|	-	0.12	12.9	0.0	0.3	11.6	0.0	1.6	1	0	0	1	1	1	0	PIN	domain	of	ribonuclease
OMPdecase	PF00215.24	gi|390937829|ref|YP_006401567.1|	-	2.1e-22	79.8	1.3	2.7e-22	79.5	1.3	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
QRPTase_C	PF01729.19	gi|390937829|ref|YP_006401567.1|	-	6.9e-05	22.7	0.2	0.00017	21.4	0.1	1.7	1	1	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
Ribul_P_3_epim	PF00834.19	gi|390937829|ref|YP_006401567.1|	-	0.00061	19.2	0.4	0.00079	18.9	0.4	1.5	1	1	0	1	1	1	1	Ribulose-phosphate	3	epimerase	family
His_biosynth	PF00977.21	gi|390937829|ref|YP_006401567.1|	-	0.00075	19.0	0.4	0.0014	18.2	0.3	1.5	1	1	0	1	1	1	1	Histidine	biosynthesis	protein
NanE	PF04131.14	gi|390937829|ref|YP_006401567.1|	-	0.0013	17.9	0.2	0.0024	17.1	0.1	1.4	1	1	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
FMN_dh	PF01070.18	gi|390937829|ref|YP_006401567.1|	-	0.0085	15.2	0.2	0.011	14.8	0.2	1.3	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
IMPDH	PF00478.25	gi|390937829|ref|YP_006401567.1|	-	0.0094	15.0	1.7	0.01	14.9	1.7	1.2	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
TMP-TENI	PF02581.17	gi|390937829|ref|YP_006401567.1|	-	0.02	14.2	0.3	0.038	13.3	0.3	1.5	1	0	0	1	1	1	0	Thiamine	monophosphate	synthase
ThiG	PF05690.14	gi|390937829|ref|YP_006401567.1|	-	0.024	14.0	1.0	0.045	13.1	0.5	1.6	1	1	0	1	1	1	0	Thiazole	biosynthesis	protein	ThiG
4HFCP_synth	PF04476.13	gi|390937829|ref|YP_006401567.1|	-	0.037	13.8	0.1	0.16	11.6	0.0	1.8	1	1	1	2	2	2	0	4-HFC-P	synthase
PEP_hydrolase	PF09370.10	gi|390937829|ref|YP_006401567.1|	-	0.056	12.7	0.4	0.19	10.9	0.1	2.0	2	1	0	2	2	2	0	Phosphoenolpyruvate	hydrolase-like
Ala_racemase_N	PF01168.20	gi|390937829|ref|YP_006401567.1|	-	0.057	13.1	0.0	1.3	8.7	0.0	2.2	1	1	0	2	2	2	0	Alanine	racemase,	N-terminal	domain
tRNA-synt_1b	PF00579.25	gi|390937830|ref|YP_006401568.1|	-	2.3e-45	155.2	0.0	4.9e-45	154.1	0.0	1.5	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
tRNA-synt_1f	PF01921.18	gi|390937830|ref|YP_006401568.1|	-	0.061	12.2	0.0	0.57	9.0	0.0	2.5	4	0	0	4	4	4	0	tRNA	synthetases	class	I	(K)
SIS	PF01380.22	gi|390937831|ref|YP_006401569.1|	-	8.6e-38	129.2	1.0	5.9e-24	84.4	0.7	2.4	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|390937831|ref|YP_006401569.1|	-	4.2e-13	49.7	0.0	7.9e-13	48.8	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|390937831|ref|YP_006401569.1|	-	3.7e-09	36.6	0.0	8.8e-09	35.3	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|390937831|ref|YP_006401569.1|	-	0.00019	21.4	0.3	0.00049	20.1	0.3	1.7	1	0	0	1	1	1	1	SIS	domain
GATase_4	PF13230.6	gi|390937831|ref|YP_006401569.1|	-	0.016	14.1	0.0	0.021	13.7	0.0	1.2	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
GCH_III	PF05165.12	gi|390937832|ref|YP_006401570.1|	-	0.0034	16.7	0.0	0.018	14.3	0.0	2.0	2	1	0	2	2	2	1	GTP	cyclohydrolase	III
Snf7	PF03357.21	gi|390937835|ref|YP_006401573.1|	-	0.0051	16.4	2.6	0.014	15.0	2.6	1.8	1	1	0	1	1	1	1	Snf7
Sigma70_r4_2	PF08281.12	gi|390937835|ref|YP_006401573.1|	-	0.0069	16.0	0.6	0.018	14.7	0.1	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
HisK_N	PF09385.10	gi|390937835|ref|YP_006401573.1|	-	0.057	13.4	0.5	0.12	12.3	0.5	1.5	1	0	0	1	1	1	0	Histidine	kinase	N	terminal
DUF5388	PF17363.2	gi|390937835|ref|YP_006401573.1|	-	0.062	13.5	0.1	0.14	12.4	0.1	1.6	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5388)
DUF4125	PF13526.6	gi|390937835|ref|YP_006401573.1|	-	0.077	12.6	1.4	0.071	12.7	0.4	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4125)
LOH1CR12	PF10158.9	gi|390937835|ref|YP_006401573.1|	-	0.14	12.2	1.3	0.3	11.1	0.4	1.9	2	0	0	2	2	2	0	Tumour	suppressor	protein
AIRS_C	PF02769.22	gi|390937837|ref|YP_006401575.1|	-	1.1e-16	61.4	0.2	1.7e-16	60.8	0.2	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|390937837|ref|YP_006401575.1|	-	4.1e-12	46.6	0.1	9.2e-12	45.5	0.1	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
zf-B_box	PF00643.24	gi|390937838|ref|YP_006401576.1|	-	4.7e-06	26.6	29.5	0.0087	16.2	3.1	3.9	2	1	0	3	3	3	2	B-box	zinc	finger
zf-HIT	PF04438.16	gi|390937838|ref|YP_006401576.1|	-	0.0005	19.9	5.9	0.0005	19.9	5.9	4.5	2	1	2	4	4	4	1	HIT	zinc	finger
FYVE	PF01363.21	gi|390937838|ref|YP_006401576.1|	-	0.036	14.2	30.7	2.1	8.5	4.6	4.0	1	1	1	2	2	2	0	FYVE	zinc	finger
zf-AN1	PF01428.16	gi|390937838|ref|YP_006401576.1|	-	0.044	13.9	2.2	0.044	13.9	2.2	3.8	1	1	3	4	4	4	0	AN1-like	Zinc	finger
Prok-RING_2	PF14445.6	gi|390937838|ref|YP_006401576.1|	-	0.063	13.5	23.1	0.69	10.1	8.8	2.5	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	2
DZR	PF12773.7	gi|390937838|ref|YP_006401576.1|	-	0.27	11.3	24.5	14	5.8	0.7	3.8	1	1	1	2	2	2	0	Double	zinc	ribbon
C1_2	PF03107.16	gi|390937838|ref|YP_006401576.1|	-	4.7	7.6	31.9	27	5.2	7.6	4.1	1	1	2	3	3	3	0	C1	domain
Desulfoferrod_N	PF06397.12	gi|390937838|ref|YP_006401576.1|	-	8.8	6.0	26.8	0.34	10.6	0.9	4.8	3	2	2	5	5	5	0	Desulfoferrodoxin,	N-terminal	domain
TatD_DNase	PF01026.21	gi|390937839|ref|YP_006401577.1|	-	3.4e-17	62.7	0.0	4.1e-17	62.4	0.0	1.1	1	0	0	1	1	1	1	TatD	related	DNase
Amdase	PF17645.1	gi|390937839|ref|YP_006401577.1|	-	0.016	14.8	0.0	0.036	13.7	0.0	1.5	1	0	0	1	1	1	0	Arylmalonate	decarboxylase
ABC_cobalt	PF09819.9	gi|390937840|ref|YP_006401578.1|	-	9.4e-34	116.2	8.1	9.4e-34	116.2	8.1	1.9	2	0	0	2	2	2	1	ABC-type	cobalt	transport	system,	permease	component
CytB6-F_Fe-S	PF08802.10	gi|390937840|ref|YP_006401578.1|	-	2.3	8.3	13.6	2.5	8.2	0.7	3.6	4	0	0	4	4	4	0	Cytochrome	B6-F	complex	Fe-S	subunit
DUF3060	PF11259.8	gi|390937841|ref|YP_006401579.1|	-	0.017	14.8	0.7	0.058	13.1	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3060)
NAD_synthase	PF02540.17	gi|390937842|ref|YP_006401580.1|	-	1.6e-73	246.8	0.0	1.9e-73	246.5	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|390937842|ref|YP_006401580.1|	-	7.5e-05	21.7	0.0	0.0026	16.6	0.0	2.1	2	0	0	2	2	2	2	tRNA	methyl	transferase
Arginosuc_synth	PF00764.19	gi|390937842|ref|YP_006401580.1|	-	0.11	11.8	0.0	0.15	11.3	0.0	1.2	1	0	0	1	1	1	0	Arginosuccinate	synthase
QueC	PF06508.13	gi|390937842|ref|YP_006401580.1|	-	0.2	11.1	0.0	0.54	9.7	0.0	1.7	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
AMMECR1	PF01871.17	gi|390937843|ref|YP_006401581.1|	-	4.2e-47	159.8	0.0	5e-47	159.6	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
Mut7-C	PF01927.16	gi|390937844|ref|YP_006401582.1|	-	1.2e-42	145.4	0.0	1.4e-42	145.2	0.0	1.0	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
DUF5615	PF18480.1	gi|390937844|ref|YP_006401582.1|	-	2.3e-05	24.1	0.0	6.9e-05	22.5	0.0	1.8	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF5615)
CBS	PF00571.28	gi|390937845|ref|YP_006401583.1|	-	8.9e-25	86.9	2.4	1e-06	29.1	0.0	4.2	4	0	0	4	4	4	4	CBS	domain
Acetyltransf_1	PF00583.25	gi|390937845|ref|YP_006401583.1|	-	0.12	12.7	0.0	0.9	9.8	0.0	2.3	2	1	1	3	3	3	0	Acetyltransferase	(GNAT)	family
CBS	PF00571.28	gi|390937846|ref|YP_006401584.1|	-	1.2e-45	153.7	11.7	1.8e-14	53.9	1.2	4.2	4	0	0	4	4	4	4	CBS	domain
Flavin_Reduct	PF01613.18	gi|390937847|ref|YP_006401585.1|	-	1.8e-28	99.6	0.0	2.2e-28	99.3	0.0	1.0	1	0	0	1	1	1	1	Flavin	reductase	like	domain
HTH_24	PF13412.6	gi|390937848|ref|YP_006401586.1|	-	1.6e-15	56.4	2.4	2.7e-15	55.6	2.4	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|390937848|ref|YP_006401586.1|	-	1.8e-14	53.4	0.2	2.9e-14	52.8	0.2	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|390937848|ref|YP_006401586.1|	-	8.5e-14	51.1	1.9	1.3e-13	50.6	1.9	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|390937848|ref|YP_006401586.1|	-	2.2e-05	24.3	0.4	0.00066	19.6	0.5	2.2	2	0	0	2	2	2	1	HTH	domain
HTH_IclR	PF09339.10	gi|390937848|ref|YP_006401586.1|	-	3.6e-05	23.5	0.1	6.9e-05	22.6	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|390937848|ref|YP_006401586.1|	-	0.00021	21.2	0.1	0.0011	18.9	0.3	1.9	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.6	gi|390937848|ref|YP_006401586.1|	-	0.00037	20.9	0.3	0.00098	19.6	0.1	1.7	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_23	PF13384.6	gi|390937848|ref|YP_006401586.1|	-	0.00046	19.9	0.1	0.0014	18.4	0.1	1.8	1	1	1	2	2	2	1	Homeodomain-like	domain
Penicillinase_R	PF03965.16	gi|390937848|ref|YP_006401586.1|	-	0.00082	19.7	0.0	0.0015	18.9	0.0	1.4	1	0	0	1	1	1	1	Penicillinase	repressor
TrmB	PF01978.19	gi|390937848|ref|YP_006401586.1|	-	0.00088	19.1	0.1	0.0017	18.2	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|390937848|ref|YP_006401586.1|	-	0.002	18.0	0.1	0.0069	16.2	0.2	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|390937848|ref|YP_006401586.1|	-	0.002	18.1	0.0	0.0037	17.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
RuvB_C	PF05491.13	gi|390937848|ref|YP_006401586.1|	-	0.0028	17.5	0.1	0.0066	16.3	0.1	1.6	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
Sigma70_r4	PF04545.16	gi|390937848|ref|YP_006401586.1|	-	0.0071	15.9	0.2	0.013	15.0	0.2	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|390937848|ref|YP_006401586.1|	-	0.0082	16.0	0.1	0.024	14.5	0.1	1.7	2	0	0	2	2	2	1	MarR	family
AsnC_trans_reg2	PF17805.1	gi|390937848|ref|YP_006401586.1|	-	0.0093	16.1	0.1	0.025	14.7	0.0	1.9	2	1	0	2	2	2	1	AsnC-like	ligand	binding	domain
HTH_38	PF13936.6	gi|390937848|ref|YP_006401586.1|	-	0.012	15.4	0.6	0.035	13.9	0.4	1.9	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_47	PF16221.5	gi|390937848|ref|YP_006401586.1|	-	0.013	15.1	0.0	0.025	14.1	0.0	1.5	1	0	0	1	1	1	0	winged	helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|390937848|ref|YP_006401586.1|	-	0.024	14.3	0.1	0.047	13.4	0.1	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_40	PF14493.6	gi|390937848|ref|YP_006401586.1|	-	0.076	13.5	0.1	0.14	12.7	0.1	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_32	PF13565.6	gi|390937848|ref|YP_006401586.1|	-	0.078	13.6	0.2	0.14	12.8	0.2	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_Tnp_Tc3_2	PF01498.18	gi|390937848|ref|YP_006401586.1|	-	0.09	13.0	0.4	0.19	12.0	0.4	1.5	1	0	0	1	1	1	0	Transposase
Gln-synt_C	PF00120.24	gi|390937849|ref|YP_006401587.1|	-	1.3e-90	303.9	0.0	1.6e-90	303.6	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|390937849|ref|YP_006401587.1|	-	3.3e-10	39.5	0.0	1.6e-09	37.4	0.0	2.0	2	0	0	2	2	2	1	Glutamine	synthetase,	beta-Grasp	domain
DAO	PF01266.24	gi|390937850|ref|YP_006401588.1|	-	1.1e-05	25.2	0.0	0.023	14.3	0.0	2.1	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|390937850|ref|YP_006401588.1|	-	0.022	14.0	0.0	0.035	13.3	0.0	1.3	1	0	0	1	1	1	0	Thi4	family
FAD_binding_3	PF01494.19	gi|390937850|ref|YP_006401588.1|	-	0.13	11.5	0.1	0.4	9.9	0.0	1.7	2	0	0	2	2	2	0	FAD	binding	domain
AdoMet_dc	PF02675.15	gi|390937851|ref|YP_006401589.1|	-	4.5e-32	110.5	0.0	5.1e-32	110.3	0.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
UPF0051	PF01458.17	gi|390937854|ref|YP_006401592.1|	-	7e-19	68.4	0.0	8.9e-19	68.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.17	gi|390937855|ref|YP_006401593.1|	-	1.2e-63	214.8	0.4	1.5e-63	214.5	0.4	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
ABC_tran	PF00005.27	gi|390937856|ref|YP_006401594.1|	-	3.7e-20	72.9	0.0	4.7e-20	72.5	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390937856|ref|YP_006401594.1|	-	2.5e-11	44.0	0.0	3.4e-05	23.8	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390937856|ref|YP_006401594.1|	-	9.1e-10	38.3	0.0	1.7e-08	34.2	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|390937856|ref|YP_006401594.1|	-	3.5e-05	23.7	0.0	0.0058	16.4	0.1	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|390937856|ref|YP_006401594.1|	-	8.3e-05	22.3	0.1	0.0002	21.0	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|390937856|ref|YP_006401594.1|	-	0.0025	18.4	0.1	0.0038	17.8	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|390937856|ref|YP_006401594.1|	-	0.0082	16.1	0.1	0.013	15.4	0.1	1.2	1	0	0	1	1	1	1	RsgA	GTPase
AAA	PF00004.29	gi|390937856|ref|YP_006401594.1|	-	0.017	15.5	0.1	0.075	13.5	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_13	PF13166.6	gi|390937856|ref|YP_006401594.1|	-	0.02	13.6	0.1	1.2	7.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|390937856|ref|YP_006401594.1|	-	0.039	13.9	0.6	1	9.2	0.0	2.5	1	1	2	3	3	3	0	NACHT	domain
AAA_16	PF13191.6	gi|390937856|ref|YP_006401594.1|	-	0.084	13.3	0.1	0.12	12.7	0.1	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.6	gi|390937856|ref|YP_006401594.1|	-	0.21	11.1	0.0	0.32	10.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|390937856|ref|YP_006401594.1|	-	0.24	11.7	0.5	0.46	10.7	0.2	1.8	2	1	0	2	2	2	0	AAA	domain
AA_kinase	PF00696.28	gi|390937857|ref|YP_006401595.1|	-	1.7e-28	99.9	0.0	3.1e-28	99.0	0.0	1.4	1	1	0	1	1	1	1	Amino	acid	kinase	family
Qn_am_d_aIV	PF09100.10	gi|390937857|ref|YP_006401595.1|	-	0.14	12.0	0.0	0.23	11.3	0.0	1.3	1	0	0	1	1	1	0	Quinohemoprotein	amine	dehydrogenase,	alpha	subunit	domain	IV
EamA	PF00892.20	gi|390937858|ref|YP_006401596.1|	-	1.5e-22	80.3	46.6	2.2e-12	47.3	21.1	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
Amidohydro_1	PF01979.20	gi|390937859|ref|YP_006401597.1|	-	5e-46	157.6	0.0	5.9e-46	157.4	0.0	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|390937859|ref|YP_006401597.1|	-	5e-15	55.9	0.0	1.2e-12	48.1	0.0	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
Trm112p	PF03966.16	gi|390937860|ref|YP_006401598.1|	-	1.1e-11	45.2	1.7	1.6e-11	44.6	1.7	1.2	1	0	0	1	1	1	1	Trm112p-like	protein
zf-RING_7	PF02591.15	gi|390937860|ref|YP_006401598.1|	-	0.03	14.5	0.6	5.4	7.3	0.0	2.8	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|390937860|ref|YP_006401598.1|	-	0.076	13.2	2.2	0.18	12.0	0.9	2.2	2	1	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Phage_int_SAM_5	PF13102.6	gi|390937860|ref|YP_006401598.1|	-	0.14	12.5	0.0	0.22	11.9	0.0	1.3	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
PGM_PMM_I	PF02878.16	gi|390937861|ref|YP_006401599.1|	-	7.1e-45	152.1	0.0	1.3e-44	151.3	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|390937861|ref|YP_006401599.1|	-	1.9e-23	83.0	0.0	4.4e-23	81.9	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|390937861|ref|YP_006401599.1|	-	5.7e-22	78.1	0.0	1.1e-21	77.2	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|390937861|ref|YP_006401599.1|	-	1.7e-12	47.3	0.1	3.9e-12	46.2	0.1	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
DUF3107	PF11305.8	gi|390937862|ref|YP_006401600.1|	-	0.0049	17.1	0.1	0.0093	16.2	0.1	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3107)
Corona_3	PF04694.12	gi|390937862|ref|YP_006401600.1|	-	0.13	12.6	0.1	0.26	11.7	0.0	1.5	1	1	1	2	2	2	0	Coronavirus	ORF3	protein
MEDS	PF14417.6	gi|390937863|ref|YP_006401601.1|	-	0.17	11.7	0.0	0.17	11.7	0.0	1.2	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
MMR_HSR1_Xtn	PF16897.5	gi|390937864|ref|YP_006401602.1|	-	2.4e-21	75.7	0.1	7.7e-20	70.9	0.1	2.3	2	0	0	2	2	2	1	C-terminal	region	of	MMR_HSR1	domain
TGS	PF02824.21	gi|390937864|ref|YP_006401602.1|	-	1.1e-18	67.0	0.0	2e-18	66.2	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
MMR_HSR1	PF01926.23	gi|390937864|ref|YP_006401602.1|	-	2.2e-15	56.7	0.0	5.6e-15	55.4	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|390937864|ref|YP_006401602.1|	-	2e-09	37.2	0.0	1.2e-08	34.6	0.0	2.0	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|390937864|ref|YP_006401602.1|	-	8.8e-06	25.4	0.0	0.018	14.6	0.0	3.6	1	1	1	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
YchF-GTPase_C	PF06071.13	gi|390937864|ref|YP_006401602.1|	-	8.7e-05	22.6	0.4	0.011	15.9	0.4	2.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF933)
RsgA_GTPase	PF03193.16	gi|390937864|ref|YP_006401602.1|	-	0.00027	20.9	0.1	0.35	10.7	0.0	2.7	2	1	0	2	2	2	2	RsgA	GTPase
SRPRB	PF09439.10	gi|390937864|ref|YP_006401602.1|	-	0.0066	15.9	0.0	0.015	14.8	0.0	1.5	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
Mg_chelatase	PF01078.21	gi|390937864|ref|YP_006401602.1|	-	0.032	13.6	0.0	0.084	12.2	0.0	1.7	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
Dynamin_N	PF00350.23	gi|390937864|ref|YP_006401602.1|	-	0.058	13.5	0.1	0.5	10.4	0.0	2.4	3	0	0	3	3	3	0	Dynamin	family
AAA_22	PF13401.6	gi|390937864|ref|YP_006401602.1|	-	0.074	13.3	0.0	0.23	11.7	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
MerR-DNA-bind	PF09278.11	gi|390937864|ref|YP_006401602.1|	-	0.12	12.9	0.5	34	5.1	0.0	3.3	3	0	0	3	3	3	0	MerR,	DNA	binding
TniB	PF05621.11	gi|390937864|ref|YP_006401602.1|	-	0.13	11.7	0.0	0.39	10.1	0.0	1.8	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_16	PF13191.6	gi|390937864|ref|YP_006401602.1|	-	0.17	12.2	0.0	0.64	10.4	0.0	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
RNase_HII	PF01351.18	gi|390937865|ref|YP_006401603.1|	-	2.3e-31	109.2	0.0	2.7e-31	108.9	0.0	1.1	1	0	0	1	1	1	1	Ribonuclease	HII
DUF2153	PF09921.9	gi|390937866|ref|YP_006401604.1|	-	7.6e-50	167.8	3.6	9.2e-50	167.6	3.6	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2153)
VPR	PF00522.18	gi|390937866|ref|YP_006401604.1|	-	0.13	12.3	1.1	0.88	9.6	0.2	2.4	1	1	1	2	2	2	0	VPR/VPX	protein
DapH_N	PF08503.10	gi|390937867|ref|YP_006401605.1|	-	0.013	15.7	0.0	0.023	14.9	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrodipicolinate	succinyltransferase	N-terminal
YdjM	PF04307.14	gi|390937869|ref|YP_006401607.1|	-	2.2e-06	27.1	5.6	2.9e-06	26.7	5.6	1.2	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn_dep_PLPC	PF00882.18	gi|390937869|ref|YP_006401607.1|	-	0.0098	15.9	0.0	0.013	15.5	0.0	1.3	1	0	0	1	1	1	1	Zinc	dependent	phospholipase	C
DUF4184	PF13803.6	gi|390937869|ref|YP_006401607.1|	-	0.09	12.5	4.9	0.11	12.1	4.9	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4184)
TIP49	PF06068.13	gi|390937870|ref|YP_006401608.1|	-	4.3e-141	470.2	0.3	6.5e-141	469.6	0.3	1.2	1	0	0	1	1	1	1	TIP49	P-loop	domain
TIP49_C	PF17856.1	gi|390937870|ref|YP_006401608.1|	-	3.7e-26	91.0	1.7	3.7e-26	91.0	1.7	2.3	3	0	0	3	3	2	1	TIP49	AAA-lid	domain
AAA	PF00004.29	gi|390937870|ref|YP_006401608.1|	-	5e-12	46.4	3.9	4.5e-09	36.8	0.1	3.0	4	0	0	4	4	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|390937870|ref|YP_006401608.1|	-	4.3e-09	36.3	0.5	1.3e-06	28.2	0.1	2.9	3	0	0	3	3	3	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|390937870|ref|YP_006401608.1|	-	2e-06	28.3	3.1	1.2e-05	25.8	1.0	2.6	2	1	0	2	2	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|390937870|ref|YP_006401608.1|	-	2.2e-06	28.0	0.1	0.0061	16.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_5	PF07728.14	gi|390937870|ref|YP_006401608.1|	-	0.00011	22.2	0.1	0.00053	20.0	0.0	2.3	2	1	0	2	2	1	1	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|390937870|ref|YP_006401608.1|	-	0.00014	22.4	0.0	0.00041	20.9	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_7	PF12775.7	gi|390937870|ref|YP_006401608.1|	-	0.0002	20.9	0.1	0.0022	17.6	0.0	2.1	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_25	PF13481.6	gi|390937870|ref|YP_006401608.1|	-	0.00056	19.5	0.4	0.0029	17.2	0.1	2.1	1	1	1	2	2	2	1	AAA	domain
TFIID-31kDa	PF02291.15	gi|390937870|ref|YP_006401608.1|	-	0.00061	19.9	0.1	0.063	13.3	0.1	2.8	3	0	0	3	3	3	1	Transcription	initiation	factor	IID,	31kD	subunit
Mg_chelatase	PF01078.21	gi|390937870|ref|YP_006401608.1|	-	0.00082	18.8	0.8	0.0018	17.7	0.1	1.8	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
DnaB_C	PF03796.15	gi|390937870|ref|YP_006401608.1|	-	0.0012	18.2	0.0	0.0055	16.1	0.0	1.9	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
AAA_30	PF13604.6	gi|390937870|ref|YP_006401608.1|	-	0.0013	18.5	0.2	0.07	12.8	0.1	2.4	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|390937870|ref|YP_006401608.1|	-	0.0017	18.1	0.1	0.0038	17.0	0.1	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_19	PF13245.6	gi|390937870|ref|YP_006401608.1|	-	0.0021	18.4	1.7	0.028	14.8	1.7	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|390937870|ref|YP_006401608.1|	-	0.0064	16.8	0.1	0.026	14.8	0.1	2.1	2	0	0	2	2	1	1	AAA	domain
DUF2075	PF09848.9	gi|390937870|ref|YP_006401608.1|	-	0.011	15.0	0.0	0.022	14.0	0.0	1.5	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_33	PF13671.6	gi|390937870|ref|YP_006401608.1|	-	0.014	15.5	0.0	0.027	14.6	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
ResIII	PF04851.15	gi|390937870|ref|YP_006401608.1|	-	0.021	14.8	0.0	0.16	11.9	0.0	2.1	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Sigma54_activat	PF00158.26	gi|390937870|ref|YP_006401608.1|	-	0.022	14.4	0.6	0.29	10.8	0.0	2.7	3	0	0	3	3	3	0	Sigma-54	interaction	domain
PhoH	PF02562.16	gi|390937870|ref|YP_006401608.1|	-	0.027	13.9	0.1	0.058	12.8	0.1	1.6	1	0	0	1	1	1	0	PhoH-like	protein
AAA_11	PF13086.6	gi|390937870|ref|YP_006401608.1|	-	0.03	14.1	0.0	0.067	13.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|390937870|ref|YP_006401608.1|	-	0.036	14.4	0.0	0.072	13.5	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Zeta_toxin	PF06414.12	gi|390937870|ref|YP_006401608.1|	-	0.038	13.3	0.0	0.085	12.1	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
AAA_17	PF13207.6	gi|390937870|ref|YP_006401608.1|	-	0.044	14.2	0.5	0.22	11.9	0.2	2.4	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|390937870|ref|YP_006401608.1|	-	0.068	13.7	0.0	0.14	12.7	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
Parvo_NS1	PF01057.17	gi|390937870|ref|YP_006401608.1|	-	0.07	12.2	0.2	0.25	10.4	0.1	1.9	1	1	1	2	2	2	0	Parvovirus	non-structural	protein	NS1
NACHT	PF05729.12	gi|390937870|ref|YP_006401608.1|	-	0.1	12.5	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
SBF2	PF12335.8	gi|390937870|ref|YP_006401608.1|	-	0.12	12.0	0.0	0.19	11.3	0.0	1.2	1	0	0	1	1	1	0	Myotubularin	protein
TsaE	PF02367.17	gi|390937870|ref|YP_006401608.1|	-	0.12	12.4	0.0	0.25	11.4	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Pyridoxal_deC	PF00282.19	gi|390937871|ref|YP_006401609.1|	-	3.3e-23	82.0	0.0	9.4e-23	80.5	0.0	1.8	1	1	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.19	gi|390937871|ref|YP_006401609.1|	-	2.2e-13	49.9	0.0	1e-11	44.4	0.0	2.0	2	0	0	2	2	2	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|390937871|ref|YP_006401609.1|	-	6.3e-09	35.5	0.0	2.2e-08	33.7	0.0	1.7	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|390937871|ref|YP_006401609.1|	-	3.7e-08	32.9	0.1	0.0015	17.8	0.0	2.5	1	1	1	2	2	2	2	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|390937871|ref|YP_006401609.1|	-	0.019	14.3	0.0	0.028	13.7	0.0	1.1	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
OKR_DC_1	PF01276.20	gi|390937871|ref|YP_006401609.1|	-	0.073	11.8	0.1	0.32	9.7	0.1	1.8	1	1	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	major	domain
RIO1	PF01163.22	gi|390937872|ref|YP_006401610.1|	-	1.4e-43	148.7	0.0	2e-43	148.2	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.11	gi|390937872|ref|YP_006401610.1|	-	1.7e-20	73.0	0.4	3.7e-20	71.9	0.4	1.6	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.23	gi|390937872|ref|YP_006401610.1|	-	8.5e-07	29.1	0.0	9.4e-06	25.7	0.0	2.6	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
Pkinase_fungal	PF17667.1	gi|390937872|ref|YP_006401610.1|	-	0.00021	20.2	0.0	0.00026	19.9	0.0	1.1	1	0	0	1	1	1	1	Fungal	protein	kinase
WaaY	PF06176.11	gi|390937872|ref|YP_006401610.1|	-	0.0038	16.9	0.0	0.0068	16.0	0.0	1.4	1	0	0	1	1	1	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Pkinase	PF00069.25	gi|390937872|ref|YP_006401610.1|	-	0.0047	16.3	0.0	0.015	14.7	0.0	1.7	1	1	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.14	gi|390937872|ref|YP_006401610.1|	-	0.0081	15.5	0.0	0.029	13.7	0.0	1.9	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
TrmB	PF01978.19	gi|390937872|ref|YP_006401610.1|	-	0.034	14.0	0.2	0.16	11.9	0.1	2.3	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Fructosamin_kin	PF03881.14	gi|390937872|ref|YP_006401610.1|	-	0.052	12.7	0.0	0.096	11.9	0.0	1.5	1	0	0	1	1	1	0	Fructosamine	kinase
DUF460	PF04312.13	gi|390937873|ref|YP_006401611.1|	-	6.3e-48	162.1	1.2	2.1e-47	160.4	1.2	2.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
DUF641	PF04859.12	gi|390937873|ref|YP_006401611.1|	-	0.029	14.7	8.6	0.063	13.6	0.4	2.9	1	1	2	3	3	3	0	Plant	protein	of	unknown	function	(DUF641)
DUF16	PF01519.16	gi|390937873|ref|YP_006401611.1|	-	0.039	14.4	4.1	5.2	7.6	0.5	3.0	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
DUF2229	PF09989.9	gi|390937873|ref|YP_006401611.1|	-	0.041	13.5	0.1	0.18	11.4	0.3	2.0	2	0	0	2	2	2	0	CoA	enzyme	activase	uncharacterised	domain	(DUF2229)
MPS2	PF17060.5	gi|390937873|ref|YP_006401611.1|	-	0.067	12.4	8.4	0.12	11.6	7.1	1.8	1	1	0	1	1	1	0	Monopolar	spindle	protein	2
AAA_13	PF13166.6	gi|390937873|ref|YP_006401611.1|	-	0.11	11.1	4.4	0.2	10.3	4.4	1.4	1	0	0	1	1	1	0	AAA	domain
Ead_Ea22	PF13935.6	gi|390937873|ref|YP_006401611.1|	-	0.12	13.0	3.0	0.093	13.4	0.8	1.9	2	0	0	2	2	2	0	Ead/Ea22-like	protein
TRAF_BIRC3_bd	PF16673.5	gi|390937873|ref|YP_006401611.1|	-	0.26	11.1	8.0	1.4	8.8	1.9	2.9	1	1	1	2	2	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
TMF_DNA_bd	PF12329.8	gi|390937873|ref|YP_006401611.1|	-	0.29	11.2	15.0	0.24	11.4	1.4	3.4	3	0	0	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
MSC	PF09402.10	gi|390937873|ref|YP_006401611.1|	-	0.58	9.5	2.3	0.81	9.1	0.3	2.0	2	0	0	2	2	2	0	Man1-Src1p-C-terminal	domain
Spc29	PF17082.5	gi|390937873|ref|YP_006401611.1|	-	0.86	9.4	10.9	0.47	10.2	7.3	2.4	2	1	0	2	2	2	0	Spindle	Pole	Component	29
NYD-SP28	PF14772.6	gi|390937873|ref|YP_006401611.1|	-	0.89	9.6	11.8	0.41	10.7	0.9	3.3	3	0	0	3	3	3	0	Sperm	tail
ABC_tran_CTD	PF16326.5	gi|390937873|ref|YP_006401611.1|	-	2.5	8.4	9.1	0.56	10.5	1.5	3.1	3	0	0	3	3	3	0	ABC	transporter	C-terminal	domain
Cep57_MT_bd	PF06657.13	gi|390937873|ref|YP_006401611.1|	-	2.5	8.6	6.8	17	5.9	6.8	2.3	1	1	0	1	1	1	0	Centrosome	microtubule-binding	domain	of	Cep57
IL31	PF15209.6	gi|390937873|ref|YP_006401611.1|	-	3.7	7.3	5.0	2.6	7.8	1.3	2.6	2	0	0	2	2	2	0	Interleukin	31
Fib_alpha	PF08702.10	gi|390937873|ref|YP_006401611.1|	-	5.4	7.2	8.9	0.57	10.4	1.9	2.6	3	0	0	3	3	3	0	Fibrinogen	alpha/beta	chain	family
Med9	PF07544.13	gi|390937873|ref|YP_006401611.1|	-	7.6	6.7	7.7	8.5	6.6	4.9	2.5	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
AdoMet_Synthase	PF01941.19	gi|390937874|ref|YP_006401612.1|	-	1.5e-169	564.0	1.2	1.7e-169	563.8	1.2	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
FbpA	PF05833.11	gi|390937875|ref|YP_006401613.1|	-	1.3e-36	126.4	5.0	1.6e-36	126.0	5.0	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|390937875|ref|YP_006401613.1|	-	2.6e-22	79.6	0.0	1.7e-21	76.9	0.0	2.3	3	0	0	3	3	2	1	NFACT	protein	RNA	binding	domain
Occludin_ELL	PF07303.13	gi|390937875|ref|YP_006401613.1|	-	0.0024	18.6	8.4	0.0069	17.1	1.5	2.6	2	0	0	2	2	2	1	Occludin	homology	domain
MPM1	PF17234.2	gi|390937875|ref|YP_006401613.1|	-	0.01	16.1	0.1	0.021	15.1	0.1	1.5	1	0	0	1	1	1	0	Mitochondrial	peculiar	membrane	protein	1
NPV_P10	PF05531.12	gi|390937875|ref|YP_006401613.1|	-	0.012	16.1	0.7	0.14	12.6	0.1	2.3	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
LMBR1	PF04791.16	gi|390937875|ref|YP_006401613.1|	-	0.044	12.7	0.4	0.058	12.3	0.4	1.2	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
IL31	PF15209.6	gi|390937875|ref|YP_006401613.1|	-	0.048	13.4	0.6	1.1	9.1	0.1	2.7	3	0	0	3	3	3	0	Interleukin	31
Baculo_PEP_C	PF04513.12	gi|390937875|ref|YP_006401613.1|	-	0.1	12.6	1.1	0.47	10.5	0.0	2.0	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Fez1	PF06818.15	gi|390937875|ref|YP_006401613.1|	-	0.22	11.9	7.8	0.42	11.0	7.8	1.4	1	0	0	1	1	1	0	Fez1
Spc7	PF08317.11	gi|390937875|ref|YP_006401613.1|	-	0.34	9.7	14.7	0.019	13.9	6.2	2.1	1	1	1	2	2	2	0	Spc7	kinetochore	protein
FmiP_Thoc5	PF09766.9	gi|390937875|ref|YP_006401613.1|	-	0.47	9.7	7.0	0.41	9.9	1.7	2.0	2	0	0	2	2	2	0	Fms-interacting	protein/Thoc5
IES5	PF17335.2	gi|390937875|ref|YP_006401613.1|	-	0.61	10.4	4.3	0.31	11.3	0.5	2.3	2	0	0	2	2	2	0	Ino80	complex	subunit	5
DHR10	PF18595.1	gi|390937875|ref|YP_006401613.1|	-	0.77	9.8	11.4	0.22	11.6	1.3	2.2	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
THOC7	PF05615.13	gi|390937875|ref|YP_006401613.1|	-	1.1	9.6	9.5	0.85	9.9	1.9	2.3	2	0	0	2	2	2	0	Tho	complex	subunit	7
DUF16	PF01519.16	gi|390937875|ref|YP_006401613.1|	-	1.2	9.7	5.2	0.86	10.1	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF16
DUF745	PF05335.13	gi|390937875|ref|YP_006401613.1|	-	1.2	8.8	2.9	2.2	8.0	0.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF745)
DUF1664	PF07889.12	gi|390937875|ref|YP_006401613.1|	-	1.4	9.0	5.5	3.4	7.7	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Fib_alpha	PF08702.10	gi|390937875|ref|YP_006401613.1|	-	2.4	8.3	6.1	8.6	6.5	0.9	2.5	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
DUF3958	PF13125.6	gi|390937875|ref|YP_006401613.1|	-	3.7	7.8	9.6	0.54	10.5	2.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3958)
HAUS-augmin3	PF14932.6	gi|390937875|ref|YP_006401613.1|	-	5.9	6.4	8.2	0.44	10.1	1.1	2.0	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	3
Laminin_II	PF06009.12	gi|390937875|ref|YP_006401613.1|	-	6.3	6.8	8.0	28	4.7	0.4	2.3	1	1	1	2	2	2	0	Laminin	Domain	II
7TMR-DISM_7TM	PF07695.11	gi|390937876|ref|YP_006401614.1|	-	0.0069	16.3	6.5	0.0088	16.0	6.5	1.0	1	0	0	1	1	1	1	7TM	diverse	intracellular	signalling
DUF4199	PF13858.6	gi|390937876|ref|YP_006401614.1|	-	0.083	13.3	7.3	0.097	13.1	7.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
Peptidase_U4	PF03419.13	gi|390937876|ref|YP_006401614.1|	-	0.17	11.2	3.4	0.18	11.1	3.4	1.0	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
SelK_SelG	PF10961.8	gi|390937876|ref|YP_006401614.1|	-	0.38	11.4	2.2	0.75	10.4	0.3	2.1	1	1	2	3	3	3	0	Selenoprotein	SelK_SelG
RNA_Me_trans	PF04252.13	gi|390937877|ref|YP_006401615.1|	-	2.8e-36	125.0	0.0	3.4e-36	124.7	0.0	1.0	1	0	0	1	1	1	1	Predicted	SAM-dependent	RNA	methyltransferase
Translin	PF01997.16	gi|390937878|ref|YP_006401616.1|	-	3.6e-13	50.0	0.0	2.1e-11	44.2	0.0	2.3	1	1	0	1	1	1	1	Translin	family
HEPN	PF05168.14	gi|390937878|ref|YP_006401616.1|	-	0.047	13.8	0.5	0.33	11.1	0.0	2.2	2	1	0	2	2	2	0	HEPN	domain
PPR	PF01535.20	gi|390937878|ref|YP_006401616.1|	-	0.072	13.4	0.1	0.58	10.5	0.1	2.7	3	0	0	3	3	3	0	PPR	repeat
RNase_J_C	PF17770.1	gi|390937878|ref|YP_006401616.1|	-	0.1	13.6	0.1	5.1	8.2	0.2	3.3	3	1	2	5	5	5	0	Ribonuclease	J	C-terminal	domain
Stanniocalcin	PF03298.13	gi|390937878|ref|YP_006401616.1|	-	0.13	11.6	0.1	0.25	10.6	0.1	1.5	2	0	0	2	2	2	0	Stanniocalcin	family
TrmB	PF01978.19	gi|390937879|ref|YP_006401617.1|	-	3.5e-05	23.6	0.2	6.2e-05	22.8	0.2	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|390937879|ref|YP_006401617.1|	-	9.3e-05	22.3	0.1	0.00015	21.6	0.1	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|390937879|ref|YP_006401617.1|	-	0.00019	21.2	0.0	0.00045	20.0	0.0	1.6	2	0	0	2	2	2	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|390937879|ref|YP_006401617.1|	-	0.00052	20.1	0.0	0.00066	19.8	0.0	1.3	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
Rrf2	PF02082.20	gi|390937879|ref|YP_006401617.1|	-	0.0011	19.3	0.1	0.0022	18.3	0.1	1.5	1	1	0	1	1	1	1	Transcriptional	regulator
TFIIE_alpha	PF02002.17	gi|390937879|ref|YP_006401617.1|	-	0.0018	18.1	0.1	0.0056	16.5	0.1	1.7	2	0	0	2	2	2	1	TFIIE	alpha	subunit
RNA_pol_Rpc34	PF05158.12	gi|390937879|ref|YP_006401617.1|	-	0.0042	16.5	1.6	0.19	11.1	0.1	2.0	1	1	1	2	2	2	2	RNA	polymerase	Rpc34	subunit
HTH_5	PF01022.20	gi|390937879|ref|YP_006401617.1|	-	0.0042	16.9	0.4	0.011	15.6	0.3	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
z-alpha	PF02295.17	gi|390937879|ref|YP_006401617.1|	-	0.0054	16.8	0.2	0.0081	16.2	0.2	1.3	1	0	0	1	1	1	1	Adenosine	deaminase	z-alpha	domain
HTH_36	PF13730.6	gi|390937879|ref|YP_006401617.1|	-	0.014	15.3	0.0	0.021	14.8	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_micro	PF17007.5	gi|390937879|ref|YP_006401617.1|	-	0.019	13.8	0.0	0.021	13.7	0.0	1.1	1	0	0	1	1	1	0	HTH-like
HTH_11	PF08279.12	gi|390937879|ref|YP_006401617.1|	-	0.042	13.8	0.4	0.085	12.8	0.4	1.4	1	0	0	1	1	1	0	HTH	domain
Trans_reg_C	PF00486.28	gi|390937879|ref|YP_006401617.1|	-	0.057	13.5	0.0	0.15	12.1	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulatory	protein,	C	terminal
RasGAP	PF00616.19	gi|390937879|ref|YP_006401617.1|	-	0.07	12.8	0.0	0.07	12.8	0.0	1.2	1	0	0	1	1	1	0	GTPase-activator	protein	for	Ras-like	GTPase
HTH_27	PF13463.6	gi|390937879|ref|YP_006401617.1|	-	0.11	13.0	0.0	0.2	12.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Radical_SAM	PF04055.21	gi|390937880|ref|YP_006401618.1|	-	6.9e-24	85.1	0.0	1.5e-23	84.0	0.0	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|390937880|ref|YP_006401618.1|	-	1.3e-05	25.2	0.0	3.1e-05	24.0	0.0	1.7	1	0	0	1	1	1	1	B12	binding	domain
ATR13	PF16829.5	gi|390937880|ref|YP_006401618.1|	-	0.1	13.0	0.0	5.4	7.4	0.0	2.9	2	1	0	2	2	2	0	Avirulence	protein	ATR13,	RxLR	effector
Stork_head	PF10264.9	gi|390937881|ref|YP_006401619.1|	-	0.014	15.5	0.1	0.8	9.9	0.0	2.2	1	1	1	2	2	2	0	Winged	helix	Storkhead-box1	domain
ALS_ss_C	PF10369.9	gi|390937881|ref|YP_006401619.1|	-	0.023	14.9	0.3	0.048	13.9	0.3	1.5	1	1	1	2	2	2	0	Small	subunit	of	acetolactate	synthase
DUF4423	PF14394.6	gi|390937881|ref|YP_006401619.1|	-	0.03	14.0	0.1	0.23	11.1	0.0	1.9	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HAD_2	PF13419.6	gi|390937882|ref|YP_006401620.1|	-	8.3e-10	39.0	0.0	1.9e-09	37.8	0.0	1.6	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|390937882|ref|YP_006401620.1|	-	0.0033	17.5	0.0	0.0052	16.8	0.0	1.3	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|390937882|ref|YP_006401620.1|	-	0.041	14.3	0.0	0.057	13.8	0.0	1.3	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
TatD_DNase	PF01026.21	gi|390937884|ref|YP_006401622.1|	-	3.9e-38	131.3	0.0	5e-38	130.9	0.0	1.1	1	0	0	1	1	1	1	TatD	related	DNase
AP_endonuc_2	PF01261.24	gi|390937884|ref|YP_006401622.1|	-	0.051	13.0	0.0	0.068	12.6	0.0	1.2	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Amidohydro_1	PF01979.20	gi|390937884|ref|YP_006401622.1|	-	0.11	11.8	0.5	0.61	9.3	0.5	2.0	1	1	0	1	1	1	0	Amidohydrolase	family
UPF0242	PF06785.11	gi|390937886|ref|YP_006401624.1|	-	3.5e-05	24.0	13.1	4.7e-05	23.6	13.1	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
Tmemb_cc2	PF10267.9	gi|390937886|ref|YP_006401624.1|	-	4.6e-05	22.7	6.6	6.4e-05	22.3	6.6	1.3	1	0	0	1	1	1	1	Predicted	transmembrane	and	coiled-coil	2	protein
GerE	PF00196.19	gi|390937886|ref|YP_006401624.1|	-	8.3e-05	22.1	0.1	0.00033	20.1	0.0	2.0	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|390937886|ref|YP_006401624.1|	-	0.00024	20.7	0.0	0.00065	19.3	0.0	1.8	1	0	0	1	1	1	1	Sigma-70,	region	4
Macoilin	PF09726.9	gi|390937886|ref|YP_006401624.1|	-	0.00026	19.7	3.3	0.00029	19.6	3.3	1.1	1	0	0	1	1	1	1	Macoilin	family
HTH_40	PF14493.6	gi|390937886|ref|YP_006401624.1|	-	0.00029	21.2	4.1	0.0012	19.2	4.1	2.1	1	1	0	1	1	1	1	Helix-turn-helix	domain
Spc7	PF08317.11	gi|390937886|ref|YP_006401624.1|	-	0.00032	19.7	11.3	0.00044	19.2	11.3	1.2	1	0	0	1	1	1	1	Spc7	kinetochore	protein
HTH_38	PF13936.6	gi|390937886|ref|YP_006401624.1|	-	0.0005	19.8	0.1	0.0011	18.6	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF812	PF05667.11	gi|390937886|ref|YP_006401624.1|	-	0.0005	19.1	6.9	0.00057	18.9	6.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
HTH_24	PF13412.6	gi|390937886|ref|YP_006401624.1|	-	0.00055	19.4	0.3	0.0036	16.8	0.1	2.5	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|390937886|ref|YP_006401624.1|	-	0.00068	19.4	0.0	0.0015	18.3	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
Fib_alpha	PF08702.10	gi|390937886|ref|YP_006401624.1|	-	0.0018	18.4	5.9	0.0018	18.4	5.9	1.7	2	0	0	2	2	1	1	Fibrinogen	alpha/beta	chain	family
HTH_29	PF13551.6	gi|390937886|ref|YP_006401624.1|	-	0.0019	18.2	0.0	0.0038	17.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
ATG16	PF08614.11	gi|390937886|ref|YP_006401624.1|	-	0.002	18.4	13.5	0.0035	17.6	13.5	1.3	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
FPP	PF05911.11	gi|390937886|ref|YP_006401624.1|	-	0.0029	15.9	8.6	0.0032	15.7	8.6	1.1	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
AAA_13	PF13166.6	gi|390937886|ref|YP_006401624.1|	-	0.0032	16.2	5.3	0.0041	15.8	5.3	1.3	1	0	0	1	1	1	1	AAA	domain
HTH_11	PF08279.12	gi|390937886|ref|YP_006401624.1|	-	0.0034	17.3	0.2	0.03	14.3	0.0	2.5	2	0	0	2	2	2	1	HTH	domain
ERM	PF00769.19	gi|390937886|ref|YP_006401624.1|	-	0.0042	16.9	9.5	0.0055	16.5	9.5	1.3	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
DUF3552	PF12072.8	gi|390937886|ref|YP_006401624.1|	-	0.0067	15.9	11.7	0.012	15.0	11.7	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3552)
ADIP	PF11559.8	gi|390937886|ref|YP_006401624.1|	-	0.0067	16.5	9.5	0.015	15.4	9.5	1.6	1	0	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
DUF4407	PF14362.6	gi|390937886|ref|YP_006401624.1|	-	0.0083	15.5	2.6	0.0098	15.3	2.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
Atg14	PF10186.9	gi|390937886|ref|YP_006401624.1|	-	0.0085	15.2	6.4	0.011	14.9	6.4	1.2	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF4164	PF13747.6	gi|390937886|ref|YP_006401624.1|	-	0.01	16.1	11.8	0.019	15.2	9.6	2.4	2	1	0	2	2	1	0	Domain	of	unknown	function	(DUF4164)
SOG2	PF10428.9	gi|390937886|ref|YP_006401624.1|	-	0.011	15.0	1.7	0.012	14.8	1.7	1.1	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
DUF16	PF01519.16	gi|390937886|ref|YP_006401624.1|	-	0.011	16.2	14.1	0.014	15.9	7.5	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
Exonuc_VII_L	PF02601.15	gi|390937886|ref|YP_006401624.1|	-	0.012	15.2	4.8	0.016	14.8	4.8	1.2	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
SIL1	PF16782.5	gi|390937886|ref|YP_006401624.1|	-	0.014	14.7	4.6	0.017	14.4	4.6	1.1	1	0	0	1	1	1	0	Nucleotide	exchange	factor	SIL1
HTH_DeoR	PF08220.12	gi|390937886|ref|YP_006401624.1|	-	0.014	15.1	0.1	0.072	12.8	0.0	2.1	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|390937886|ref|YP_006401624.1|	-	0.015	14.8	0.0	0.052	13.1	0.0	1.9	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_5	PF01022.20	gi|390937886|ref|YP_006401624.1|	-	0.017	15.0	0.0	0.053	13.4	0.0	1.9	2	0	0	2	2	1	0	Bacterial	regulatory	protein,	arsR	family
E2R135	PF11570.8	gi|390937886|ref|YP_006401624.1|	-	0.023	15.0	2.5	0.046	14.0	1.8	1.7	1	1	1	2	2	2	0	Coiled-coil	receptor-binding	R-domain	of	colicin	E2
DUF1664	PF07889.12	gi|390937886|ref|YP_006401624.1|	-	0.024	14.7	6.3	0.038	14.0	4.7	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
HTH_20	PF12840.7	gi|390937886|ref|YP_006401624.1|	-	0.027	14.5	0.0	0.13	12.3	0.0	2.2	2	0	0	2	2	1	0	Helix-turn-helix	domain
Bacillus_HBL	PF05791.11	gi|390937886|ref|YP_006401624.1|	-	0.028	14.2	7.3	0.053	13.3	7.3	1.6	1	1	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
BLOC1S3	PF15753.5	gi|390937886|ref|YP_006401624.1|	-	0.03	14.5	3.5	0.053	13.7	3.5	1.3	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex	1	subunit	3
Lipoprotein_20	PF13942.6	gi|390937886|ref|YP_006401624.1|	-	0.034	14.1	4.5	0.055	13.4	4.5	1.4	1	0	0	1	1	1	0	YfhG	lipoprotein
HTH_28	PF13518.6	gi|390937886|ref|YP_006401624.1|	-	0.036	14.2	0.0	0.073	13.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF641	PF04859.12	gi|390937886|ref|YP_006401624.1|	-	0.046	14.1	10.4	0.05	13.9	9.1	1.7	1	1	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
TMF_TATA_bd	PF12325.8	gi|390937886|ref|YP_006401624.1|	-	0.058	13.6	14.5	0.06	13.6	11.0	2.2	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
HAP1_N	PF04849.13	gi|390937886|ref|YP_006401624.1|	-	0.06	12.5	13.3	0.082	12.1	13.3	1.1	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
NPV_P10	PF05531.12	gi|390937886|ref|YP_006401624.1|	-	0.064	13.7	6.4	2.9	8.4	0.6	2.8	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
TEX13	PF15186.6	gi|390937886|ref|YP_006401624.1|	-	0.072	12.8	3.9	0.12	12.0	3.9	1.4	1	0	0	1	1	1	0	Testis-expressed	sequence	13	protein	family
HemX	PF04375.14	gi|390937886|ref|YP_006401624.1|	-	0.08	12.2	8.0	0.34	10.1	8.2	1.8	1	1	1	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
FapA	PF03961.13	gi|390937886|ref|YP_006401624.1|	-	0.085	11.4	8.3	0.12	11.0	8.3	1.2	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Cep57_MT_bd	PF06657.13	gi|390937886|ref|YP_006401624.1|	-	0.089	13.3	8.0	0.078	13.4	5.6	2.1	2	0	0	2	2	1	0	Centrosome	microtubule-binding	domain	of	Cep57
DUF1759	PF03564.15	gi|390937886|ref|YP_006401624.1|	-	0.095	12.6	4.0	0.14	12.1	3.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1759)
Baculo_PEP_C	PF04513.12	gi|390937886|ref|YP_006401624.1|	-	0.1	12.6	7.2	0.21	11.6	5.8	2.2	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
HTH_Tnp_ISL3	PF13542.6	gi|390937886|ref|YP_006401624.1|	-	0.11	11.9	0.0	0.2	11.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
SPATA24	PF15175.6	gi|390937886|ref|YP_006401624.1|	-	0.12	12.3	9.2	0.15	12.0	9.2	1.2	1	0	0	1	1	1	0	Spermatogenesis-associated	protein	24
DivIC	PF04977.15	gi|390937886|ref|YP_006401624.1|	-	0.12	12.2	16.0	0.17	11.7	5.4	2.7	1	1	1	2	2	2	0	Septum	formation	initiator
GrpE	PF01025.19	gi|390937886|ref|YP_006401624.1|	-	0.12	12.0	13.4	0.17	11.5	13.0	1.5	1	1	0	1	1	1	0	GrpE
Golgin_A5	PF09787.9	gi|390937886|ref|YP_006401624.1|	-	0.12	11.8	13.7	0.16	11.4	13.4	1.3	1	1	0	1	1	1	0	Golgin	subfamily	A	member	5
ZapB	PF06005.12	gi|390937886|ref|YP_006401624.1|	-	0.13	12.8	22.4	0.13	12.7	13.4	2.8	1	1	1	2	2	2	0	Cell	division	protein	ZapB
DUF948	PF06103.11	gi|390937886|ref|YP_006401624.1|	-	0.13	12.6	5.7	0.2	11.9	2.4	2.7	2	1	1	3	3	2	0	Bacterial	protein	of	unknown	function	(DUF948)
TPR_MLP1_2	PF07926.12	gi|390937886|ref|YP_006401624.1|	-	0.13	12.3	15.9	0.037	14.1	12.3	1.8	2	0	0	2	2	1	0	TPR/MLP1/MLP2-like	protein
Nup88	PF10168.9	gi|390937886|ref|YP_006401624.1|	-	0.14	9.9	11.3	0.19	9.5	11.3	1.1	1	0	0	1	1	1	0	Nuclear	pore	component
DUF3450	PF11932.8	gi|390937886|ref|YP_006401624.1|	-	0.15	11.4	9.8	2.4	7.4	9.8	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
Herpes_UL6	PF01763.16	gi|390937886|ref|YP_006401624.1|	-	0.19	10.2	3.7	0.25	9.8	3.7	1.2	1	0	0	1	1	1	0	Herpesvirus	UL6	like
GAS	PF13851.6	gi|390937886|ref|YP_006401624.1|	-	0.22	10.8	17.8	0.45	9.8	15.4	1.9	1	1	1	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
Tropomyosin	PF00261.20	gi|390937886|ref|YP_006401624.1|	-	0.25	10.7	17.5	0.034	13.5	13.0	1.9	2	0	0	2	2	1	0	Tropomyosin
MAD	PF05557.13	gi|390937886|ref|YP_006401624.1|	-	0.25	9.7	17.1	0.55	8.5	17.1	1.6	1	1	0	1	1	1	0	Mitotic	checkpoint	protein
DUF4094	PF13334.6	gi|390937886|ref|YP_006401624.1|	-	0.25	11.8	3.6	0.77	10.2	1.4	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4094)
HAUS-augmin3	PF14932.6	gi|390937886|ref|YP_006401624.1|	-	0.26	10.8	12.8	0.43	10.1	12.3	1.6	1	1	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
bZIP_2	PF07716.15	gi|390937886|ref|YP_006401624.1|	-	0.32	11.1	16.2	2.7	8.1	3.5	2.8	1	1	1	2	2	2	0	Basic	region	leucine	zipper
Cauli_AT	PF03233.13	gi|390937886|ref|YP_006401624.1|	-	0.35	10.8	11.8	1.8	8.4	10.3	2.3	1	1	1	2	2	2	0	Aphid	transmission	protein
PspA_IM30	PF04012.12	gi|390937886|ref|YP_006401624.1|	-	0.36	10.4	11.1	0.087	12.4	8.0	1.4	2	0	0	2	2	1	0	PspA/IM30	family
DUF745	PF05335.13	gi|390937886|ref|YP_006401624.1|	-	0.45	10.2	5.4	0.44	10.2	4.3	1.6	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF745)
V_ATPase_I	PF01496.19	gi|390937886|ref|YP_006401624.1|	-	0.47	8.3	6.9	0.68	7.8	6.9	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Spc29	PF17082.5	gi|390937886|ref|YP_006401624.1|	-	0.51	10.1	9.3	4.3	7.1	9.3	2.1	1	1	0	1	1	1	0	Spindle	Pole	Component	29
Peptidase_S46	PF10459.9	gi|390937886|ref|YP_006401624.1|	-	0.52	8.9	4.4	0.75	8.4	4.4	1.1	1	0	0	1	1	1	0	Peptidase	S46
DUF244	PF03112.14	gi|390937886|ref|YP_006401624.1|	-	0.54	10.1	4.8	1.3	8.9	4.5	1.8	2	0	0	2	2	1	0	Uncharacterized	protein	family	(ORF7)	DUF
Fez1	PF06818.15	gi|390937886|ref|YP_006401624.1|	-	0.66	10.4	15.8	0.46	10.9	13.9	1.6	1	1	0	1	1	1	0	Fez1
COG2	PF06148.11	gi|390937886|ref|YP_006401624.1|	-	0.66	10.1	11.2	0.19	11.8	4.0	2.8	2	1	1	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Tropomyosin_1	PF12718.7	gi|390937886|ref|YP_006401624.1|	-	0.72	10.0	20.0	0.16	12.1	14.9	2.2	2	1	0	2	2	2	0	Tropomyosin	like
CREPT	PF16566.5	gi|390937886|ref|YP_006401624.1|	-	0.72	10.0	9.2	1	9.5	8.4	1.7	1	1	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Nup54	PF13874.6	gi|390937886|ref|YP_006401624.1|	-	1	9.5	10.9	1	9.5	9.5	1.6	1	1	0	1	1	1	0	Nucleoporin	complex	subunit	54
TolA_bind_tri	PF16331.5	gi|390937886|ref|YP_006401624.1|	-	1.1	9.3	10.8	19	5.4	10.8	2.5	1	1	0	1	1	1	0	TolA	binding	protein	trimerisation
DUF1192	PF06698.11	gi|390937886|ref|YP_006401624.1|	-	1.2	9.2	6.4	0.5	10.4	1.1	2.9	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
OmpH	PF03938.14	gi|390937886|ref|YP_006401624.1|	-	1.3	9.4	12.9	7	7.0	12.9	2.0	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
DUF4446	PF14584.6	gi|390937886|ref|YP_006401624.1|	-	1.7	8.7	8.3	1.9	8.5	6.5	2.0	1	1	2	3	3	2	0	Protein	of	unknown	function	(DUF4446)
DUF2203	PF09969.9	gi|390937886|ref|YP_006401624.1|	-	1.7	9.4	8.5	0.27	12.0	2.3	2.1	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
DUF4795	PF16043.5	gi|390937886|ref|YP_006401624.1|	-	1.8	8.1	12.7	4	7.0	12.5	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
Rx_N	PF18052.1	gi|390937886|ref|YP_006401624.1|	-	1.9	8.8	7.4	1.2	9.4	2.9	2.4	1	1	1	2	2	2	0	Rx	N-terminal	domain
Uso1_p115_C	PF04871.13	gi|390937886|ref|YP_006401624.1|	-	1.9	8.9	14.0	5.2	7.4	14.0	1.8	1	1	0	1	1	1	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Mod_r	PF07200.13	gi|390937886|ref|YP_006401624.1|	-	2.2	8.4	16.7	0.33	11.1	12.4	1.8	2	1	0	2	2	1	0	Modifier	of	rudimentary	(Mod(r))	protein
NBP1	PF08537.10	gi|390937886|ref|YP_006401624.1|	-	2.4	7.5	10.9	3.7	6.9	10.9	1.3	1	0	0	1	1	1	0	Fungal	Nap	binding	protein	NBP1
APG6_N	PF17675.1	gi|390937886|ref|YP_006401624.1|	-	2.6	8.6	17.8	4.5	7.8	17.7	1.5	1	1	0	1	1	1	0	Apg6	coiled-coil	region
Cep57_CLD_2	PF14197.6	gi|390937886|ref|YP_006401624.1|	-	2.6	8.2	21.9	5	7.3	19.1	2.5	2	1	1	3	3	2	0	Centrosome	localisation	domain	of	PPC89
TMF_DNA_bd	PF12329.8	gi|390937886|ref|YP_006401624.1|	-	2.6	8.1	24.9	0.038	14.0	16.8	2.1	3	0	0	3	3	1	0	TATA	element	modulatory	factor	1	DNA	binding
Rootletin	PF15035.6	gi|390937886|ref|YP_006401624.1|	-	2.6	8.0	15.2	6.7	6.7	15.2	1.6	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
G-gamma	PF00631.22	gi|390937886|ref|YP_006401624.1|	-	2.7	8.1	5.0	4.8	7.3	0.8	2.8	2	0	0	2	2	2	0	GGL	domain
SlyX	PF04102.12	gi|390937886|ref|YP_006401624.1|	-	4	8.1	11.7	1	10.0	4.9	2.7	1	1	1	2	2	2	0	SlyX
TMPIT	PF07851.13	gi|390937886|ref|YP_006401624.1|	-	4.3	6.5	11.1	0.34	10.1	6.5	1.4	2	0	0	2	2	1	0	TMPIT-like	protein
DUF2205	PF10224.9	gi|390937886|ref|YP_006401624.1|	-	4.7	7.3	12.0	8.4	6.5	9.3	2.4	1	1	1	2	2	2	0	Short	coiled-coil	protein
Seryl_tRNA_N	PF02403.22	gi|390937886|ref|YP_006401624.1|	-	5.6	7.2	15.7	5.8	7.2	13.5	2.1	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
FlaC_arch	PF05377.11	gi|390937886|ref|YP_006401624.1|	-	6	7.4	15.1	1.2	9.6	1.6	3.3	2	1	1	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
Csm1_N	PF18504.1	gi|390937886|ref|YP_006401624.1|	-	7.9	6.9	16.8	2	8.8	4.0	3.0	1	1	2	3	3	2	0	Csm1	N-terminal	domain
DUF5595	PF18077.1	gi|390937886|ref|YP_006401624.1|	-	9.7	6.4	13.9	3.1	7.9	5.0	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5595)
DUF334	PF03904.13	gi|390937886|ref|YP_006401624.1|	-	9.8	5.6	10.3	7.2	6.1	8.4	1.6	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF334)
Sua5_yciO_yrdC	PF01300.18	gi|390937888|ref|YP_006401626.1|	-	5.5e-56	188.9	0.0	8.1e-56	188.3	0.0	1.3	1	0	0	1	1	1	1	Telomere	recombination
SUA5	PF03481.13	gi|390937888|ref|YP_006401626.1|	-	2.1e-30	106.0	0.0	3.1e-30	105.5	0.0	1.3	1	0	0	1	1	1	1	Putative	GTP-binding	controlling	metal-binding
EDR1	PF14381.6	gi|390937888|ref|YP_006401626.1|	-	0.013	15.2	0.1	0.02	14.6	0.1	1.2	1	0	0	1	1	1	0	Ethylene-responsive	protein	kinase	Le-CTR1
ATPase	PF06745.13	gi|390937889|ref|YP_006401627.1|	-	2.6e-57	193.8	0.1	3e-57	193.7	0.1	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|390937889|ref|YP_006401627.1|	-	3.1e-08	33.4	0.0	4.8e-08	32.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.21	gi|390937889|ref|YP_006401627.1|	-	1.4e-05	24.8	0.0	2e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
Rad51	PF08423.11	gi|390937889|ref|YP_006401627.1|	-	3e-05	23.4	0.0	4.6e-05	22.8	0.0	1.4	1	1	0	1	1	1	1	Rad51
MEDS	PF14417.6	gi|390937889|ref|YP_006401627.1|	-	0.00067	19.5	0.0	0.001	19.0	0.0	1.4	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
GvpD	PF07088.11	gi|390937889|ref|YP_006401627.1|	-	0.00088	18.0	0.8	0.0046	15.6	0.8	1.9	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
DnaB_C	PF03796.15	gi|390937889|ref|YP_006401627.1|	-	0.0041	16.5	0.0	0.0068	15.8	0.0	1.4	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_24	PF13479.6	gi|390937889|ref|YP_006401627.1|	-	0.008	15.9	0.1	0.018	14.8	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
PAXNEB	PF05625.11	gi|390937889|ref|YP_006401627.1|	-	0.013	14.6	0.0	0.053	12.7	0.0	1.7	2	0	0	2	2	2	0	PAXNEB	protein
IstB_IS21	PF01695.17	gi|390937889|ref|YP_006401627.1|	-	0.014	15.2	0.0	0.025	14.3	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_5	PF07728.14	gi|390937889|ref|YP_006401627.1|	-	0.09	12.8	0.0	0.15	12.1	0.0	1.6	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
DUF643	PF04867.12	gi|390937889|ref|YP_006401627.1|	-	0.12	13.1	1.0	0.5	11.0	0.0	2.3	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF643)
AAA_14	PF13173.6	gi|390937889|ref|YP_006401627.1|	-	0.12	12.4	0.0	0.21	11.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|390937889|ref|YP_006401627.1|	-	0.14	11.6	0.0	11	5.4	0.0	2.3	2	1	0	2	2	2	0	Chromatin	associated	protein	KTI12
AAA_7	PF12775.7	gi|390937889|ref|YP_006401627.1|	-	0.15	11.6	0.0	0.25	10.9	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_22	PF13401.6	gi|390937889|ref|YP_006401627.1|	-	0.18	12.1	0.0	0.32	11.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Helicase_RecD	PF05127.14	gi|390937890|ref|YP_006401628.1|	-	1e-54	185.0	0.0	1.7e-54	184.4	0.0	1.3	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|390937890|ref|YP_006401628.1|	-	8e-42	143.2	0.0	9.9e-29	100.4	0.0	2.2	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|390937890|ref|YP_006401628.1|	-	1.4e-29	101.9	0.0	1.3e-28	98.8	0.0	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1726)
Acetyltransf_7	PF13508.7	gi|390937890|ref|YP_006401628.1|	-	4.9e-05	23.7	0.0	0.00027	21.3	0.0	2.3	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
tRNA_bind_2	PF13725.6	gi|390937890|ref|YP_006401628.1|	-	0.00015	21.5	0.0	0.0003	20.6	0.0	1.4	1	1	0	1	1	1	1	Possible	tRNA	binding	domain
Acetyltransf_1	PF00583.25	gi|390937890|ref|YP_006401628.1|	-	0.00018	21.7	0.0	0.0005	20.3	0.0	1.9	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
AAA	PF00004.29	gi|390937891|ref|YP_006401629.1|	-	1.3e-97	323.3	0.0	4.8e-50	169.4	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|390937891|ref|YP_006401629.1|	-	2.7e-36	123.1	3.2	3.8e-18	65.0	0.1	2.8	2	1	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|390937891|ref|YP_006401629.1|	-	2.6e-28	98.0	0.5	9.2e-28	96.3	0.2	2.1	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.12	gi|390937891|ref|YP_006401629.1|	-	2.4e-16	59.9	0.0	2.3e-08	34.0	0.0	2.8	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
CDC48_2	PF02933.17	gi|390937891|ref|YP_006401629.1|	-	4e-16	58.6	0.1	2.1e-15	56.2	0.0	2.4	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_16	PF13191.6	gi|390937891|ref|YP_006401629.1|	-	1.6e-13	51.4	0.0	1.1e-06	29.1	0.0	2.8	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|390937891|ref|YP_006401629.1|	-	2.8e-13	50.3	0.0	3.7e-07	30.4	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
TIP49	PF06068.13	gi|390937891|ref|YP_006401629.1|	-	2.2e-12	46.9	0.1	7e-05	22.2	0.0	2.8	2	1	1	3	3	3	2	TIP49	P-loop	domain
AAA_5	PF07728.14	gi|390937891|ref|YP_006401629.1|	-	4e-12	46.3	0.8	6.8e-06	26.1	0.1	3.7	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|390937891|ref|YP_006401629.1|	-	5.2e-12	46.2	1.2	0.00056	20.2	0.1	4.5	2	2	0	3	3	3	2	AAA	domain
AAA_33	PF13671.6	gi|390937891|ref|YP_006401629.1|	-	1.7e-11	44.4	0.0	0.0001	22.5	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|390937891|ref|YP_006401629.1|	-	2.3e-09	37.4	0.0	0.00016	21.7	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|390937891|ref|YP_006401629.1|	-	1.1e-08	35.6	0.0	0.0017	18.9	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|390937891|ref|YP_006401629.1|	-	1.7e-08	34.4	0.0	0.0062	16.3	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|390937891|ref|YP_006401629.1|	-	1.7e-08	34.9	0.0	0.0022	18.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
Vps4_C	PF09336.10	gi|390937891|ref|YP_006401629.1|	-	6.3e-08	32.5	0.1	0.0034	17.3	0.0	3.3	3	0	0	3	3	2	2	Vps4	C	terminal	oligomerisation	domain
RNA_helicase	PF00910.22	gi|390937891|ref|YP_006401629.1|	-	1.5e-07	31.8	0.0	0.0035	17.7	0.0	2.8	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.21	gi|390937891|ref|YP_006401629.1|	-	3.6e-07	29.8	1.0	0.018	14.4	0.1	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.6	gi|390937891|ref|YP_006401629.1|	-	2e-06	27.5	7.9	0.51	9.9	0.0	4.8	3	2	1	4	4	4	2	AAA	domain
AAA_24	PF13479.6	gi|390937891|ref|YP_006401629.1|	-	2e-06	27.6	0.1	0.019	14.7	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
TsaE	PF02367.17	gi|390937891|ref|YP_006401629.1|	-	4.7e-06	26.6	0.1	0.073	13.1	0.0	2.7	2	1	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Zeta_toxin	PF06414.12	gi|390937891|ref|YP_006401629.1|	-	1e-05	24.9	0.0	0.15	11.3	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
ATPase	PF06745.13	gi|390937891|ref|YP_006401629.1|	-	2.4e-05	23.8	4.5	0.3	10.4	0.0	4.3	3	2	1	5	5	5	2	KaiC
ABC_tran	PF00005.27	gi|390937891|ref|YP_006401629.1|	-	2.4e-05	24.8	0.0	0.26	11.8	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
AAA_7	PF12775.7	gi|390937891|ref|YP_006401629.1|	-	3e-05	23.6	0.0	0.19	11.2	0.0	2.6	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
Parvo_NS1	PF01057.17	gi|390937891|ref|YP_006401629.1|	-	3.7e-05	22.9	0.1	0.045	12.8	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
Sigma54_activat	PF00158.26	gi|390937891|ref|YP_006401629.1|	-	3.8e-05	23.5	0.0	0.4	10.4	0.0	3.1	2	1	0	2	2	2	2	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|390937891|ref|YP_006401629.1|	-	3.8e-05	23.6	0.0	0.12	12.2	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|390937891|ref|YP_006401629.1|	-	6.9e-05	22.9	0.0	0.035	14.0	0.0	2.9	3	0	0	3	3	2	1	ATPase	domain	predominantly	from	Archaea
PhoH	PF02562.16	gi|390937891|ref|YP_006401629.1|	-	7.5e-05	22.3	0.6	0.26	10.7	0.1	2.7	2	0	0	2	2	2	2	PhoH-like	protein
Bac_DnaA	PF00308.18	gi|390937891|ref|YP_006401629.1|	-	7.7e-05	22.6	0.0	0.0055	16.6	0.0	2.6	2	0	0	2	2	2	1	Bacterial	dnaA	protein
DUF815	PF05673.13	gi|390937891|ref|YP_006401629.1|	-	0.00013	21.2	0.0	0.35	10.0	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
DUF2075	PF09848.9	gi|390937891|ref|YP_006401629.1|	-	0.0002	20.7	0.0	0.077	12.2	0.0	2.2	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|390937891|ref|YP_006401629.1|	-	0.00029	20.8	0.9	0.55	10.1	0.1	3.2	2	1	1	3	3	3	1	NACHT	domain
AAA_17	PF13207.6	gi|390937891|ref|YP_006401629.1|	-	0.0014	19.1	0.0	1.6	9.2	0.0	3.0	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|390937891|ref|YP_006401629.1|	-	0.0021	17.8	0.2	2.2	7.9	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|390937891|ref|YP_006401629.1|	-	0.0023	17.9	0.0	2.4	8.0	0.0	2.9	2	1	1	3	3	3	1	Rad17	P-loop	domain
AAA_11	PF13086.6	gi|390937891|ref|YP_006401629.1|	-	0.0024	17.7	0.0	1.5	8.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_6	PF12774.7	gi|390937891|ref|YP_006401629.1|	-	0.0035	16.4	0.0	0.11	11.4	0.0	2.4	2	1	0	2	2	2	1	Hydrolytic	ATP	binding	site	of	dynein	motor	region
Sigma54_activ_2	PF14532.6	gi|390937891|ref|YP_006401629.1|	-	0.0045	17.1	0.0	2.3	8.3	0.0	2.6	2	0	0	2	2	2	1	Sigma-54	interaction	domain
T2SSE	PF00437.20	gi|390937891|ref|YP_006401629.1|	-	0.0087	15.2	0.0	1.3	8.0	0.0	2.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
Cytidylate_kin	PF02224.18	gi|390937891|ref|YP_006401629.1|	-	0.012	15.4	0.1	3.7	7.2	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase
IPT	PF01745.16	gi|390937891|ref|YP_006401629.1|	-	0.012	15.0	0.5	4	6.7	0.1	2.3	2	0	0	2	2	2	0	Isopentenyl	transferase
PduV-EutP	PF10662.9	gi|390937891|ref|YP_006401629.1|	-	0.017	14.9	0.0	4.2	7.1	0.0	2.5	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_19	PF13245.6	gi|390937891|ref|YP_006401629.1|	-	0.018	15.4	4.8	5.8	7.2	0.1	3.6	3	1	0	4	4	3	0	AAA	domain
SKI	PF01202.22	gi|390937891|ref|YP_006401629.1|	-	0.018	15.2	0.0	5.8	7.0	0.0	2.6	2	0	0	2	2	2	0	Shikimate	kinase
NB-ARC	PF00931.22	gi|390937891|ref|YP_006401629.1|	-	0.019	14.2	0.0	5.1	6.2	0.0	2.5	2	0	0	2	2	2	0	NB-ARC	domain
Molydop_binding	PF01568.21	gi|390937891|ref|YP_006401629.1|	-	0.033	14.2	0.1	0.16	12.0	0.0	2.1	1	1	1	2	2	2	0	Molydopterin	dinucleotide	binding	domain
Guanylate_kin	PF00625.21	gi|390937891|ref|YP_006401629.1|	-	0.05	13.3	0.2	33	4.1	0.0	3.8	2	2	2	4	4	4	0	Guanylate	kinase
AFG1_ATPase	PF03969.16	gi|390937891|ref|YP_006401629.1|	-	0.054	12.4	0.0	9.7	5.0	0.0	2.4	2	0	0	2	2	2	0	AFG1-like	ATPase
TniB	PF05621.11	gi|390937891|ref|YP_006401629.1|	-	0.058	12.8	0.0	13	5.2	0.0	3.2	4	0	0	4	4	3	0	Bacterial	TniB	protein
KAP_NTPase	PF07693.14	gi|390937891|ref|YP_006401629.1|	-	0.064	12.5	0.1	2.1	7.5	0.0	2.4	1	1	1	2	2	2	0	KAP	family	P-loop	domain
AAA_29	PF13555.6	gi|390937891|ref|YP_006401629.1|	-	0.082	12.7	0.0	18	5.2	0.0	2.6	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
DUF1905	PF08922.11	gi|390937891|ref|YP_006401629.1|	-	0.091	12.8	0.3	0.98	9.5	0.0	2.7	3	0	0	3	3	2	0	Domain	of	unknown	function	(DUF1905)
ResIII	PF04851.15	gi|390937891|ref|YP_006401629.1|	-	0.091	12.8	0.0	20	5.2	0.0	2.7	2	1	0	3	3	3	0	Type	III	restriction	enzyme,	res	subunit
Cytidylate_kin2	PF13189.6	gi|390937891|ref|YP_006401629.1|	-	0.097	12.8	0.0	2.5	8.2	0.0	2.3	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
Hydin_ADK	PF17213.3	gi|390937891|ref|YP_006401629.1|	-	0.11	12.8	0.2	6.7	6.9	0.0	2.3	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
eIF-1a	PF01176.19	gi|390937891|ref|YP_006401629.1|	-	0.12	12.2	0.1	0.46	10.3	0.1	2.1	1	1	0	1	1	1	0	Translation	initiation	factor	1A	/	IF-1
NTPase_1	PF03266.15	gi|390937891|ref|YP_006401629.1|	-	0.15	12.0	8.0	15	5.4	0.0	4.7	4	1	1	5	5	4	0	NTPase
Viral_helicase1	PF01443.18	gi|390937891|ref|YP_006401629.1|	-	0.15	11.8	0.0	3.7	7.2	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Zot	PF05707.12	gi|390937891|ref|YP_006401629.1|	-	0.2	11.3	0.1	3.4	7.3	0.0	2.8	2	2	1	3	3	3	0	Zonular	occludens	toxin	(Zot)
ATPase	PF06745.13	gi|390937892|ref|YP_006401630.1|	-	1.3e-89	299.6	0.1	1.4e-89	299.4	0.1	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|390937892|ref|YP_006401630.1|	-	8.3e-08	32.0	0.0	1.3e-07	31.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|390937892|ref|YP_006401630.1|	-	0.00011	21.6	0.2	0.0041	16.4	0.0	2.2	2	0	0	2	2	2	1	Rad51
GvpD	PF07088.11	gi|390937892|ref|YP_006401630.1|	-	0.00016	20.5	0.1	0.00022	20.0	0.1	1.2	1	0	0	1	1	1	1	GvpD	gas	vesicle	protein
RecA	PF00154.21	gi|390937892|ref|YP_006401630.1|	-	0.0014	18.2	0.3	0.25	10.8	0.0	2.7	3	0	0	3	3	3	1	recA	bacterial	DNA	recombination	protein
AAA_16	PF13191.6	gi|390937892|ref|YP_006401630.1|	-	0.0016	18.8	0.0	0.0024	18.3	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF2075	PF09848.9	gi|390937892|ref|YP_006401630.1|	-	0.0029	16.9	0.7	0.031	13.5	0.1	2.0	1	1	1	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
T2SSE	PF00437.20	gi|390937892|ref|YP_006401630.1|	-	0.0045	16.1	0.0	0.008	15.3	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
DnaB_C	PF03796.15	gi|390937892|ref|YP_006401630.1|	-	0.0093	15.3	0.0	0.014	14.8	0.0	1.4	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA	PF00004.29	gi|390937892|ref|YP_006401630.1|	-	0.012	16.0	0.3	0.024	15.0	0.3	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MEDS	PF14417.6	gi|390937892|ref|YP_006401630.1|	-	0.029	14.2	0.0	0.061	13.1	0.0	1.5	1	1	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_19	PF13245.6	gi|390937892|ref|YP_006401630.1|	-	0.03	14.7	1.5	0.12	12.8	1.4	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|390937892|ref|YP_006401630.1|	-	0.038	13.7	0.5	0.25	11.0	0.3	2.2	2	1	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|390937892|ref|YP_006401630.1|	-	0.042	14.1	0.0	0.094	13.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Parvo_NS1	PF01057.17	gi|390937892|ref|YP_006401630.1|	-	0.057	12.5	0.0	0.11	11.6	0.0	1.4	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
AAA_28	PF13521.6	gi|390937892|ref|YP_006401630.1|	-	0.073	13.3	0.4	0.18	12.1	0.2	1.8	1	1	1	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|390937892|ref|YP_006401630.1|	-	0.094	12.8	0.0	0.16	12.0	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
Flavoprotein	PF02441.19	gi|390937894|ref|YP_006401632.1|	-	2.3e-22	79.4	0.1	3.8e-22	78.7	0.1	1.3	1	0	0	1	1	1	1	Flavoprotein
PhoU_div	PF01865.16	gi|390937896|ref|YP_006401634.1|	-	4.1e-13	49.2	6.5	5e-13	48.9	6.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
PhoU	PF01895.19	gi|390937896|ref|YP_006401634.1|	-	0.00037	20.9	4.5	0.0048	17.3	0.4	2.3	2	0	0	2	2	2	1	PhoU	domain
Plk4_PB2	PF18409.1	gi|390937896|ref|YP_006401634.1|	-	0.011	16.4	0.9	0.031	15.0	0.5	2.0	1	1	0	1	1	1	0	Polo-like	Kinase	4	Polo	Box	2
TRPM_tetra	PF16519.5	gi|390937896|ref|YP_006401634.1|	-	0.03	14.4	0.6	0.03	14.4	0.6	2.8	2	0	0	2	2	2	0	Tetramerisation	domain	of	TRPM
DUF948	PF06103.11	gi|390937896|ref|YP_006401634.1|	-	0.096	13.0	2.6	2.5	8.4	1.6	3.1	3	1	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
BLYB	PF05289.11	gi|390937896|ref|YP_006401634.1|	-	0.15	12.3	5.5	0.25	11.6	0.2	2.9	2	1	1	3	3	3	0	Borrelia	hemolysin	accessory	protein
AI-2E_transport	PF01594.16	gi|390937896|ref|YP_006401634.1|	-	0.19	10.8	0.4	0.31	10.2	0.4	1.3	1	0	0	1	1	1	0	AI-2E	family	transporter
Sec34	PF04136.15	gi|390937896|ref|YP_006401634.1|	-	0.2	11.5	3.6	8.5	6.2	1.1	2.9	2	2	0	2	2	2	0	Sec34-like	family
His_kinase	PF06580.13	gi|390937896|ref|YP_006401634.1|	-	0.41	11.0	3.1	1.2	9.5	0.1	2.7	3	0	0	3	3	3	0	Histidine	kinase
NPV_P10	PF05531.12	gi|390937896|ref|YP_006401634.1|	-	1	9.8	6.6	36	4.9	5.8	3.1	2	1	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
Fib_alpha	PF08702.10	gi|390937896|ref|YP_006401634.1|	-	2.4	8.3	7.4	4	7.6	2.3	2.4	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Radical_SAM	PF04055.21	gi|390937897|ref|YP_006401635.1|	-	1.7e-15	57.8	0.7	2.1e-14	54.3	0.4	2.8	1	1	1	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|390937897|ref|YP_006401635.1|	-	3.1e-06	27.2	0.1	7.1e-06	26.1	0.1	1.6	1	0	0	1	1	1	1	B12	binding	domain
Molydop_binding	PF01568.21	gi|390937899|ref|YP_006401637.1|	-	0.00055	19.9	0.0	0.00073	19.5	0.0	1.2	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
HGTP_anticodon	PF03129.20	gi|390937900|ref|YP_006401638.1|	-	5.1e-24	84.3	0.6	1.3e-23	83.0	0.6	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|390937900|ref|YP_006401638.1|	-	7.1e-11	42.4	0.0	3.1e-10	40.3	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
zf-C2H2	PF00096.26	gi|390937900|ref|YP_006401638.1|	-	0.045	14.2	1.2	52	4.6	0.1	3.5	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
ADK_lid	PF05191.14	gi|390937900|ref|YP_006401638.1|	-	0.079	13.0	0.0	0.21	11.6	0.0	1.7	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
Arginase	PF00491.21	gi|390937901|ref|YP_006401639.1|	-	8.9e-61	205.8	0.0	1.2e-60	205.4	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
PLD_C	PF12357.8	gi|390937901|ref|YP_006401639.1|	-	0.16	11.9	0.0	0.28	11.1	0.0	1.4	1	0	0	1	1	1	0	Phospholipase	D	C	terminal
Zn-ribbon_8	PF09723.10	gi|390937902|ref|YP_006401640.1|	-	4.6e-05	23.5	1.8	5.7e-05	23.1	1.8	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|390937902|ref|YP_006401640.1|	-	0.00014	21.4	7.2	0.00093	18.8	7.2	2.0	1	1	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_4	PF13717.6	gi|390937902|ref|YP_006401640.1|	-	0.00024	20.9	0.6	0.48	10.4	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|390937902|ref|YP_006401640.1|	-	0.00098	19.1	1.9	0.029	14.3	0.1	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
Rubredoxin	PF00301.20	gi|390937902|ref|YP_006401640.1|	-	0.0012	18.9	3.2	0.018	15.0	0.5	2.1	2	0	0	2	2	2	1	Rubredoxin
TF_Zn_Ribbon	PF08271.12	gi|390937902|ref|YP_006401640.1|	-	0.0031	17.0	1.3	0.41	10.2	0.1	2.1	2	0	0	2	2	2	2	TFIIB	zinc-binding
zinc_ribbon_5	PF13719.6	gi|390937902|ref|YP_006401640.1|	-	0.0049	16.6	5.6	0.067	13.0	0.5	2.2	1	1	1	2	2	2	2	zinc-ribbon	domain
zf-RING_7	PF02591.15	gi|390937902|ref|YP_006401640.1|	-	0.0088	16.2	0.9	0.012	15.8	0.9	1.2	1	0	0	1	1	1	1	C4-type	zinc	ribbon	domain
HypA	PF01155.19	gi|390937902|ref|YP_006401640.1|	-	0.011	15.7	0.2	0.011	15.7	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TackOD1	PF18551.1	gi|390937902|ref|YP_006401640.1|	-	0.014	15.1	0.2	0.015	14.9	0.2	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zf-RING_2	PF13639.6	gi|390937902|ref|YP_006401640.1|	-	0.018	15.3	0.3	0.022	15.1	0.3	1.2	1	0	0	1	1	1	0	Ring	finger	domain
DZR	PF12773.7	gi|390937902|ref|YP_006401640.1|	-	0.022	14.8	0.4	0.031	14.3	0.4	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF4379	PF14311.6	gi|390937902|ref|YP_006401640.1|	-	0.025	15.0	0.4	0.03	14.7	0.4	1.1	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|390937902|ref|YP_006401640.1|	-	0.031	14.2	2.0	1.9	8.4	0.2	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-C2H2	PF00096.26	gi|390937902|ref|YP_006401640.1|	-	0.033	14.6	2.5	0.54	10.8	0.3	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
OrfB_Zn_ribbon	PF07282.11	gi|390937902|ref|YP_006401640.1|	-	0.034	14.1	1.7	0.053	13.4	1.7	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Rtf2	PF04641.12	gi|390937902|ref|YP_006401640.1|	-	0.04	13.3	0.5	0.043	13.2	0.5	1.0	1	0	0	1	1	1	0	Rtf2	RING-finger
zf_UBZ	PF18439.1	gi|390937902|ref|YP_006401640.1|	-	0.058	13.0	2.2	0.49	10.0	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
TFIIS_C	PF01096.18	gi|390937902|ref|YP_006401640.1|	-	0.062	13.2	2.9	4.7	7.2	0.3	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
VirDNA-topo-I_N	PF09266.10	gi|390937902|ref|YP_006401640.1|	-	0.09	13.0	0.0	0.11	12.6	0.0	1.4	1	0	0	1	1	1	0	Viral	DNA	topoisomerase	I,	N-terminal
zf-H2C2_2	PF13465.6	gi|390937902|ref|YP_006401640.1|	-	0.1	13.1	3.4	3.3	8.3	0.2	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
UPF0547	PF10571.9	gi|390937902|ref|YP_006401640.1|	-	0.11	12.7	5.4	0.63	10.2	0.7	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-C2H2_4	PF13894.6	gi|390937902|ref|YP_006401640.1|	-	0.23	12.4	1.7	4.7	8.3	0.1	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Rubredoxin_2	PF18073.1	gi|390937902|ref|YP_006401640.1|	-	0.28	11.0	4.1	3.3	7.5	1.1	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc_ribbon_13	PF09855.9	gi|390937902|ref|YP_006401640.1|	-	1.1	9.4	6.0	1.2	9.4	0.5	2.1	1	1	1	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-Mss51	PF13824.6	gi|390937902|ref|YP_006401640.1|	-	1.5	9.0	4.0	3.8	7.7	0.3	2.1	1	1	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Mu-like_Com	PF10122.9	gi|390937902|ref|YP_006401640.1|	-	2.9	7.4	6.1	10	5.7	0.5	2.1	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
SUI1	PF01253.22	gi|390937903|ref|YP_006401641.1|	-	5.3e-20	71.7	0.3	6.3e-20	71.5	0.3	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|390937903|ref|YP_006401641.1|	-	0.091	13.1	0.1	0.11	12.8	0.1	1.3	1	0	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
TFIIB	PF00382.19	gi|390937904|ref|YP_006401642.1|	-	3.5e-38	129.5	0.8	4.9e-19	68.1	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|390937904|ref|YP_006401642.1|	-	3.2e-11	42.6	0.2	5.6e-11	41.8	0.2	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|390937904|ref|YP_006401642.1|	-	3.2e-07	30.4	0.0	0.022	14.9	0.0	2.3	2	0	0	2	2	2	2	Cyclin,	C-terminal	domain
TFIIB_C_1	PF18542.1	gi|390937904|ref|YP_006401642.1|	-	0.00054	19.9	1.5	0.15	12.1	0.5	2.4	2	0	0	2	2	2	2	Transcription	factor	IIB	C-terminal	module	1
Sigma70_r4	PF04545.16	gi|390937904|ref|YP_006401642.1|	-	0.0012	18.3	0.1	0.0012	18.3	0.1	3.0	3	0	0	3	3	3	1	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.6	gi|390937904|ref|YP_006401642.1|	-	0.0025	17.2	0.2	0.069	12.6	0.0	2.6	2	1	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_AsnC-type	PF13404.6	gi|390937904|ref|YP_006401642.1|	-	0.016	15.0	0.0	0.062	13.1	0.0	2.1	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Rrf2	PF02082.20	gi|390937904|ref|YP_006401642.1|	-	0.023	15.0	0.4	11	6.4	0.1	2.5	2	0	0	2	2	2	0	Transcriptional	regulator
Cyclin_N	PF00134.23	gi|390937904|ref|YP_006401642.1|	-	0.039	13.7	0.1	1.6	8.5	0.1	2.7	2	1	0	3	3	3	0	Cyclin,	N-terminal	domain
Sigma70_r4_2	PF08281.12	gi|390937904|ref|YP_006401642.1|	-	0.042	13.5	1.4	0.15	11.8	0.1	2.7	3	1	0	3	3	3	0	Sigma-70,	region	4
RB_B	PF01857.20	gi|390937904|ref|YP_006401642.1|	-	0.057	13.5	0.1	0.1	12.7	0.1	1.4	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
DUF188	PF02639.14	gi|390937904|ref|YP_006401642.1|	-	0.069	12.8	0.0	0.15	11.8	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
A2L_zn_ribbon	PF08792.10	gi|390937904|ref|YP_006401642.1|	-	0.18	11.5	0.1	0.33	10.7	0.1	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
ABC_tran	PF00005.27	gi|390937906|ref|YP_006401644.1|	-	1.3e-27	96.9	0.0	1.7e-27	96.6	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390937906|ref|YP_006401644.1|	-	1.2e-10	41.7	1.0	3.7e-05	23.7	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390937906|ref|YP_006401644.1|	-	1.8e-06	27.5	0.3	5.3e-05	22.8	0.3	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|390937906|ref|YP_006401644.1|	-	6.8e-05	23.5	0.1	0.00018	22.1	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
ATPase_2	PF01637.18	gi|390937906|ref|YP_006401644.1|	-	0.00013	22.0	0.3	0.00024	21.1	0.3	1.4	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_29	PF13555.6	gi|390937906|ref|YP_006401644.1|	-	0.00096	18.8	0.3	0.002	17.8	0.3	1.6	1	1	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.6	gi|390937906|ref|YP_006401644.1|	-	0.0016	18.7	0.1	0.042	14.1	0.1	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_15	PF13175.6	gi|390937906|ref|YP_006401644.1|	-	0.0038	17.0	0.1	0.017	14.8	0.0	1.8	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|390937906|ref|YP_006401644.1|	-	0.0042	17.5	0.1	0.0079	16.6	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|390937906|ref|YP_006401644.1|	-	0.0067	16.4	0.1	0.014	15.3	0.1	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA_14	PF13173.6	gi|390937906|ref|YP_006401644.1|	-	0.0085	16.1	0.0	0.022	14.8	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|390937906|ref|YP_006401644.1|	-	0.024	14.8	0.1	0.058	13.6	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|390937906|ref|YP_006401644.1|	-	0.025	14.9	0.2	0.045	14.0	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
G-alpha	PF00503.20	gi|390937906|ref|YP_006401644.1|	-	0.032	13.4	0.0	0.035	13.3	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_30	PF13604.6	gi|390937906|ref|YP_006401644.1|	-	0.081	12.6	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|390937906|ref|YP_006401644.1|	-	0.083	11.5	0.1	0.71	8.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
CbiA	PF01656.23	gi|390937906|ref|YP_006401644.1|	-	0.088	12.9	0.0	0.1	12.6	0.0	1.2	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_18	PF13238.6	gi|390937906|ref|YP_006401644.1|	-	0.1	13.1	0.3	0.4	11.2	0.3	2.1	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|390937906|ref|YP_006401644.1|	-	0.13	11.8	0.0	0.23	11.0	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
T2SSE	PF00437.20	gi|390937906|ref|YP_006401644.1|	-	0.14	11.2	0.0	0.24	10.4	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Zeta_toxin	PF06414.12	gi|390937906|ref|YP_006401644.1|	-	0.17	11.1	0.0	0.31	10.3	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
PBP_like_2	PF12849.7	gi|390937909|ref|YP_006401647.1|	-	1.8e-11	44.2	0.0	2.1e-11	44.0	0.0	1.1	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_11	PF13531.6	gi|390937909|ref|YP_006401647.1|	-	0.00041	20.2	0.0	0.22	11.2	0.0	2.2	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.7	gi|390937909|ref|YP_006401647.1|	-	0.0012	18.1	0.0	0.002	17.2	0.0	1.5	1	1	0	1	1	1	1	PBP	superfamily	domain
CTP_synth_N	PF06418.14	gi|390937910|ref|YP_006401648.1|	-	9.1e-121	402.2	0.0	1.2e-120	401.8	0.0	1.2	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|390937910|ref|YP_006401648.1|	-	3.4e-40	137.9	0.0	5.1e-40	137.3	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|390937910|ref|YP_006401648.1|	-	2.3e-11	43.9	0.0	4.4e-11	42.9	0.0	1.4	1	0	0	1	1	1	1	Peptidase	C26
CbiA	PF01656.23	gi|390937910|ref|YP_006401648.1|	-	0.0062	16.6	0.0	0.0093	16.0	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GATase_3	PF07685.14	gi|390937910|ref|YP_006401648.1|	-	0.11	12.1	0.0	0.25	10.9	0.0	1.6	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
ArsA_ATPase	PF02374.15	gi|390937910|ref|YP_006401648.1|	-	0.2	10.8	0.1	0.41	9.8	0.0	1.6	2	0	0	2	2	2	0	Anion-transporting	ATPase
Pribosyltran	PF00156.27	gi|390937911|ref|YP_006401649.1|	-	1.3e-23	83.3	0.0	1.6e-23	83.0	0.0	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|390937911|ref|YP_006401649.1|	-	0.006	16.1	0.0	0.0072	15.8	0.0	1.1	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|390937911|ref|YP_006401649.1|	-	0.12	11.9	0.0	0.21	11.1	0.0	1.4	1	0	0	1	1	1	0	Phosphoribosyl	transferase
tRNA_SAD	PF07973.14	gi|390937912|ref|YP_006401650.1|	-	8.4e-12	45.0	1.0	1.1e-11	44.7	0.1	1.7	2	0	0	2	2	2	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2c	PF01411.19	gi|390937912|ref|YP_006401650.1|	-	1.4e-08	33.8	0.0	2e-08	33.3	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
PhoU	PF01895.19	gi|390937913|ref|YP_006401651.1|	-	4.8e-12	46.2	11.1	2.2e-06	28.0	1.0	2.3	2	0	0	2	2	2	2	PhoU	domain
PhoU_div	PF01865.16	gi|390937913|ref|YP_006401651.1|	-	0.00029	20.2	4.1	0.0035	16.7	0.2	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	DUF47
ABC_tran	PF00005.27	gi|390937914|ref|YP_006401652.1|	-	1.8e-32	112.7	0.0	2.4e-32	112.3	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390937914|ref|YP_006401652.1|	-	6.2e-11	42.7	0.1	3.6e-05	23.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390937914|ref|YP_006401652.1|	-	1.2e-07	31.4	0.1	0.00039	19.9	0.0	2.1	1	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|390937914|ref|YP_006401652.1|	-	0.00019	21.1	0.0	0.00043	20.0	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|390937914|ref|YP_006401652.1|	-	0.00052	20.3	0.0	0.0014	18.9	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|390937914|ref|YP_006401652.1|	-	0.00052	20.4	0.0	0.0011	19.4	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|390937914|ref|YP_006401652.1|	-	0.00088	19.2	0.0	0.0019	18.1	0.0	1.7	1	0	0	1	1	1	1	RsgA	GTPase
AAA_15	PF13175.6	gi|390937914|ref|YP_006401652.1|	-	0.00099	18.9	0.2	0.099	12.3	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
Adeno_IVa2	PF02456.15	gi|390937914|ref|YP_006401652.1|	-	0.001	18.0	0.1	0.005	15.7	0.1	1.8	2	0	0	2	2	2	1	Adenovirus	IVa2	protein
AAA_23	PF13476.6	gi|390937914|ref|YP_006401652.1|	-	0.0025	18.3	0.3	0.017	15.6	0.1	2.0	2	0	0	2	2	2	1	AAA	domain
ATPase_2	PF01637.18	gi|390937914|ref|YP_006401652.1|	-	0.0087	16.0	0.0	0.013	15.4	0.0	1.4	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_30	PF13604.6	gi|390937914|ref|YP_006401652.1|	-	0.0096	15.6	0.0	0.018	14.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|390937914|ref|YP_006401652.1|	-	0.019	14.7	0.0	0.054	13.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|390937914|ref|YP_006401652.1|	-	0.021	14.7	0.1	0.29	11.1	0.0	2.1	2	0	0	2	2	2	0	Rad17	P-loop	domain
TniB	PF05621.11	gi|390937914|ref|YP_006401652.1|	-	0.022	14.2	0.2	0.6	9.5	0.0	2.5	1	1	1	2	2	2	0	Bacterial	TniB	protein
AAA_18	PF13238.6	gi|390937914|ref|YP_006401652.1|	-	0.056	14.0	0.0	0.1	13.1	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|390937914|ref|YP_006401652.1|	-	0.09	11.8	0.1	0.17	10.9	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_5	PF07728.14	gi|390937914|ref|YP_006401652.1|	-	0.12	12.4	0.0	0.3	11.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|390937914|ref|YP_006401652.1|	-	0.13	12.2	0.0	0.28	11.1	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.6	gi|390937914|ref|YP_006401652.1|	-	0.15	12.2	0.0	0.24	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF3987	PF13148.6	gi|390937914|ref|YP_006401652.1|	-	0.16	10.9	0.0	0.25	10.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
BPD_transp_1	PF00528.22	gi|390937915|ref|YP_006401653.1|	-	7.2e-13	48.7	15.6	7.2e-13	48.7	15.6	2.5	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2830	PF11125.8	gi|390937915|ref|YP_006401653.1|	-	1.5	8.9	4.3	1.9	8.5	0.4	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2830)
BPD_transp_1	PF00528.22	gi|390937916|ref|YP_006401654.1|	-	1e-11	44.9	13.3	1e-11	44.9	13.3	2.4	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.7	gi|390937917|ref|YP_006401655.1|	-	1.2e-52	179.4	0.0	1.5e-52	179.0	0.0	1.0	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.25	gi|390937917|ref|YP_006401655.1|	-	2.2e-09	37.7	0.0	3.1e-09	37.2	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.7	gi|390937917|ref|YP_006401655.1|	-	7.2e-05	22.0	0.0	0.0003	20.0	0.0	1.9	1	1	0	1	1	1	1	PBP	superfamily	domain
DUF4538	PF15061.6	gi|390937917|ref|YP_006401655.1|	-	0.25	11.1	1.7	0.39	10.5	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4538)
PhoU	PF01895.19	gi|390937918|ref|YP_006401656.1|	-	1.1e-05	25.7	0.7	1.1e-05	25.7	0.7	2.2	2	0	0	2	2	2	1	PhoU	domain
MazE_antitoxin	PF04014.18	gi|390937918|ref|YP_006401656.1|	-	7.1e-05	22.6	0.0	0.00031	20.6	0.0	2.2	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PH_18	PF18469.1	gi|390937918|ref|YP_006401656.1|	-	0.059	13.4	0.5	0.37	10.8	0.1	2.3	1	1	1	2	2	2	0	Pleckstrin	homology	domain
FeoB_N	PF02421.18	gi|390937919|ref|YP_006401657.1|	-	7e-47	158.8	0.5	1.2e-46	158.1	0.1	1.6	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
Gate	PF07670.14	gi|390937919|ref|YP_006401657.1|	-	4.3e-22	78.5	18.2	2.2e-18	66.6	7.1	3.9	4	1	1	5	5	3	2	Nucleoside	recognition
MMR_HSR1	PF01926.23	gi|390937919|ref|YP_006401657.1|	-	6.8e-19	68.0	0.0	1.7e-18	66.8	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_Cyto	PF17910.1	gi|390937919|ref|YP_006401657.1|	-	4.7e-09	36.7	0.1	9.4e-09	35.7	0.1	1.4	1	0	0	1	1	1	1	FeoB	cytosolic	helical	domain
FeoB_C	PF07664.12	gi|390937919|ref|YP_006401657.1|	-	3e-06	26.8	0.7	3e-06	26.8	0.7	3.5	4	0	0	4	4	4	1	Ferrous	iron	transport	protein	B	C	terminus
RsgA_GTPase	PF03193.16	gi|390937919|ref|YP_006401657.1|	-	1.5e-05	25.0	0.5	0.16	11.9	0.1	2.4	2	0	0	2	2	2	2	RsgA	GTPase
Ras	PF00071.22	gi|390937919|ref|YP_006401657.1|	-	0.0037	16.9	0.0	0.0069	16.0	0.0	1.4	1	0	0	1	1	1	1	Ras	family
SRPRB	PF09439.10	gi|390937919|ref|YP_006401657.1|	-	0.0043	16.5	0.1	0.007	15.8	0.1	1.3	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
Roc	PF08477.13	gi|390937919|ref|YP_006401657.1|	-	0.035	14.3	0.0	0.067	13.4	0.0	1.6	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
GTP_EFTU	PF00009.27	gi|390937919|ref|YP_006401657.1|	-	0.1	12.1	0.2	1.2	8.7	0.2	2.4	1	1	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
Dynamin_N	PF00350.23	gi|390937919|ref|YP_006401657.1|	-	0.27	11.3	0.6	13	5.8	0.1	2.3	1	1	1	2	2	2	0	Dynamin	family
FeoA	PF04023.14	gi|390937920|ref|YP_006401658.1|	-	9.5e-15	54.6	0.1	1e-14	54.5	0.1	1.0	1	0	0	1	1	1	1	FeoA	domain
Gly_reductase	PF09338.11	gi|390937920|ref|YP_006401658.1|	-	0.16	10.3	0.2	0.15	10.4	0.2	1.0	1	0	0	1	1	1	0	Glycine/sarcosine/betaine	reductase	component	B	subunits
Zip	PF02535.22	gi|390937922|ref|YP_006401660.1|	-	7.2e-12	45.2	13.9	7.2e-12	45.2	13.9	2.5	1	1	1	2	2	2	1	ZIP	Zinc	transporter
ATP-synt_A	PF00119.20	gi|390937922|ref|YP_006401660.1|	-	0.76	9.7	10.2	0.062	13.2	3.8	2.1	1	1	1	2	2	2	0	ATP	synthase	A	chain
Lip_prot_lig_C	PF10437.9	gi|390937923|ref|YP_006401661.1|	-	8.3e-07	28.9	0.3	1e-06	28.7	0.3	1.1	1	0	0	1	1	1	1	Bacterial	lipoate	protein	ligase	C-terminus
BPL_LplA_LipB	PF03099.19	gi|390937924|ref|YP_006401662.1|	-	2.3e-12	46.9	0.0	3.7e-12	46.3	0.0	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Radical_SAM	PF04055.21	gi|390937925|ref|YP_006401663.1|	-	5.4e-09	36.6	4.7	2.1e-08	34.7	1.9	2.5	2	1	0	2	2	2	1	Radical	SAM	superfamily
Radical_SAM	PF04055.21	gi|390937926|ref|YP_006401664.1|	-	5.4e-07	30.1	0.0	1e-06	29.2	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Lactamase_B	PF00753.27	gi|390937927|ref|YP_006401665.1|	-	5.5e-15	55.9	0.1	1.2e-14	54.8	0.1	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|390937927|ref|YP_006401665.1|	-	1.7e-09	37.5	0.0	2.5e-09	36.9	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|390937927|ref|YP_006401665.1|	-	0.0021	17.5	0.0	0.0035	16.8	0.0	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
LSM	PF01423.22	gi|390937928|ref|YP_006401666.1|	-	6.3e-18	64.2	0.0	7.3e-18	64.0	0.0	1.1	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|390937928|ref|YP_006401666.1|	-	0.0091	16.1	0.0	0.012	15.8	0.0	1.2	1	0	0	1	1	1	1	Ataxin	2	SM	domain
LSM14	PF12701.7	gi|390937928|ref|YP_006401666.1|	-	0.024	14.7	0.1	0.037	14.1	0.1	1.3	1	0	0	1	1	1	0	Scd6-like	Sm	domain
Methyltransf_11	PF08241.12	gi|390937929|ref|YP_006401667.1|	-	5.4e-17	62.2	0.0	8.2e-17	61.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|390937929|ref|YP_006401667.1|	-	1.2e-14	54.8	0.0	2.3e-14	53.9	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|390937929|ref|YP_006401667.1|	-	4.5e-10	39.6	0.0	5.5e-10	39.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|390937929|ref|YP_006401667.1|	-	1.7e-09	38.3	0.0	3.1e-09	37.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|390937929|ref|YP_006401667.1|	-	5.5e-08	32.7	0.0	9.5e-08	32.0	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|390937929|ref|YP_006401667.1|	-	8.2e-07	28.6	0.0	9.7e-07	28.4	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MetW	PF07021.12	gi|390937929|ref|YP_006401667.1|	-	0.0033	17.0	0.3	0.012	15.2	0.3	1.8	1	1	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_8	PF05148.15	gi|390937929|ref|YP_006401667.1|	-	0.067	13.0	0.1	0.21	11.4	0.1	1.7	1	1	0	1	1	1	0	Hypothetical	methyltransferase
NucS	PF01939.16	gi|390937930|ref|YP_006401668.1|	-	6.8e-47	159.7	0.0	8.7e-47	159.4	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	NucS
DUF1664	PF07889.12	gi|390937931|ref|YP_006401669.1|	-	0.0025	17.8	0.4	0.0049	16.9	0.4	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
BAR_2	PF10455.9	gi|390937931|ref|YP_006401669.1|	-	0.035	13.2	0.2	0.13	11.3	0.1	1.7	1	1	1	2	2	2	0	Bin/amphiphysin/Rvs	domain	for	vesicular	trafficking
Phasin	PF05597.11	gi|390937931|ref|YP_006401669.1|	-	0.037	14.0	1.7	0.045	13.8	0.7	1.7	2	0	0	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
CNOT1_TTP_bind	PF16417.5	gi|390937931|ref|YP_006401669.1|	-	0.047	12.9	0.1	0.2	10.8	0.0	1.9	2	0	0	2	2	2	0	CCR4-NOT	transcription	complex	subunit	1	TTP	binding	domain
BLOC1_2	PF10046.9	gi|390937931|ref|YP_006401669.1|	-	0.1	12.9	0.8	0.3	11.4	0.8	1.8	1	1	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
COMPASS-Shg1	PF05205.12	gi|390937931|ref|YP_006401669.1|	-	0.24	12.1	3.4	0.8	10.5	1.7	2.6	1	1	1	2	2	2	0	COMPASS	(Complex	proteins	associated	with	Set1p)	component	shg1
TRAF_BIRC3_bd	PF16673.5	gi|390937931|ref|YP_006401669.1|	-	0.24	11.2	5.8	0.21	11.4	0.6	2.6	1	1	1	2	2	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
DUF4795	PF16043.5	gi|390937931|ref|YP_006401669.1|	-	1	8.9	5.8	3	7.4	2.4	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
Rootletin	PF15035.6	gi|390937931|ref|YP_006401669.1|	-	1.8	8.5	6.6	56	3.7	6.6	2.3	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
Lactamase_B_2	PF12706.7	gi|390937932|ref|YP_006401670.1|	-	1.6e-05	24.5	0.0	7.4e-05	22.4	0.0	1.9	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|390937932|ref|YP_006401670.1|	-	2.3e-05	24.5	0.1	9.1e-05	22.6	0.1	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|390937932|ref|YP_006401670.1|	-	0.0028	18.2	0.0	0.23	12.0	0.0	3.2	2	1	0	2	2	2	1	Rhodanese-like	domain
RMMBL	PF07521.12	gi|390937932|ref|YP_006401670.1|	-	0.1	12.5	0.0	0.32	10.9	0.0	1.8	1	0	0	1	1	1	0	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Glycos_transf_1	PF00534.20	gi|390937933|ref|YP_006401671.1|	-	5.9e-27	94.3	0.0	1.2e-26	93.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|390937933|ref|YP_006401671.1|	-	6.5e-15	55.7	0.0	9.8e-15	55.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|390937933|ref|YP_006401671.1|	-	0.00014	21.9	0.0	0.0055	16.7	0.0	2.4	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|390937933|ref|YP_006401671.1|	-	0.0049	17.2	0.0	0.01	16.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
CbiQ	PF02361.16	gi|390937934|ref|YP_006401672.1|	-	7e-11	42.2	9.1	7e-11	42.2	9.1	1.5	1	1	1	2	2	2	1	Cobalt	transport	protein
ABC_tran	PF00005.27	gi|390937935|ref|YP_006401673.1|	-	2.1e-39	135.2	0.0	1.5e-18	67.7	0.0	2.5	2	1	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|390937935|ref|YP_006401673.1|	-	4.9e-23	82.4	8.9	2.3e-09	37.5	0.0	4.1	2	2	1	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390937935|ref|YP_006401673.1|	-	6.7e-15	55.1	0.5	0.0018	17.8	0.0	4.1	3	1	0	4	4	4	3	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|390937935|ref|YP_006401673.1|	-	2.9e-09	36.5	0.4	0.00071	19.3	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|390937935|ref|YP_006401673.1|	-	1.2e-08	35.1	0.4	0.0017	18.1	0.0	3.4	3	1	0	4	4	4	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|390937935|ref|YP_006401673.1|	-	7.6e-07	29.5	0.5	0.0036	17.6	0.0	3.1	3	0	0	3	3	3	1	AAA	domain
AAA_25	PF13481.6	gi|390937935|ref|YP_006401673.1|	-	8e-07	28.8	0.1	0.013	15.1	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.6	gi|390937935|ref|YP_006401673.1|	-	1.9e-06	28.5	0.1	0.0067	16.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|390937935|ref|YP_006401673.1|	-	4.5e-06	26.9	0.1	0.00093	19.4	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|390937935|ref|YP_006401673.1|	-	1.7e-05	25.2	0.6	0.025	15.0	0.0	2.4	2	1	0	2	2	2	2	AAA	ATPase	domain
NACHT	PF05729.12	gi|390937935|ref|YP_006401673.1|	-	5.3e-05	23.2	1.3	0.042	13.8	0.1	2.7	3	0	0	3	3	2	2	NACHT	domain
AAA_30	PF13604.6	gi|390937935|ref|YP_006401673.1|	-	6e-05	22.9	0.0	0.011	15.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
T2SSE	PF00437.20	gi|390937935|ref|YP_006401673.1|	-	7.3e-05	22.0	0.1	0.36	9.8	0.1	2.3	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
IstB_IS21	PF01695.17	gi|390937935|ref|YP_006401673.1|	-	7.9e-05	22.5	0.1	0.44	10.2	0.0	3.5	4	0	0	4	4	3	1	IstB-like	ATP	binding	protein
AAA	PF00004.29	gi|390937935|ref|YP_006401673.1|	-	0.00028	21.3	0.7	0.16	12.4	0.0	3.7	4	1	1	5	5	4	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|390937935|ref|YP_006401673.1|	-	0.00029	20.8	0.3	0.018	14.9	0.0	2.4	2	0	0	2	2	2	1	RsgA	GTPase
AAA_7	PF12775.7	gi|390937935|ref|YP_006401673.1|	-	0.00075	19.0	0.0	0.21	11.1	0.0	2.2	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_24	PF13479.6	gi|390937935|ref|YP_006401673.1|	-	0.00076	19.2	1.6	0.32	10.7	0.1	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|390937935|ref|YP_006401673.1|	-	0.0012	19.4	0.7	0.29	11.7	0.0	3.2	4	0	0	4	4	3	1	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|390937935|ref|YP_006401673.1|	-	0.0012	18.2	0.3	1.5	8.1	0.0	2.3	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
Mg_chelatase	PF01078.21	gi|390937935|ref|YP_006401673.1|	-	0.0014	18.0	0.4	0.31	10.4	0.0	2.6	3	0	0	3	3	2	1	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.22	gi|390937935|ref|YP_006401673.1|	-	0.0016	18.8	0.0	0.62	10.5	0.0	2.6	2	0	0	2	2	2	1	RNA	helicase
AAA_14	PF13173.6	gi|390937935|ref|YP_006401673.1|	-	0.0025	17.9	0.0	0.37	10.8	0.0	3.2	4	0	0	4	4	2	1	AAA	domain
AAA_28	PF13521.6	gi|390937935|ref|YP_006401673.1|	-	0.0058	16.9	0.3	0.03	14.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|390937935|ref|YP_006401673.1|	-	0.0074	16.3	0.3	0.21	11.6	0.0	2.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
ATPase_2	PF01637.18	gi|390937935|ref|YP_006401673.1|	-	0.0089	16.0	0.1	1.2	9.1	0.0	2.4	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
NTPase_1	PF03266.15	gi|390937935|ref|YP_006401673.1|	-	0.019	14.9	0.8	2	8.3	0.1	2.6	2	0	0	2	2	2	0	NTPase
AAA_19	PF13245.6	gi|390937935|ref|YP_006401673.1|	-	0.021	15.2	0.9	4.5	7.6	0.1	2.6	2	1	0	2	2	2	0	AAA	domain
ATP_bind_1	PF03029.17	gi|390937935|ref|YP_006401673.1|	-	0.023	14.5	1.6	2.2	8.0	0.1	2.7	3	0	0	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
TsaE	PF02367.17	gi|390937935|ref|YP_006401673.1|	-	0.024	14.6	0.2	1.1	9.2	0.0	2.3	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Rad17	PF03215.15	gi|390937935|ref|YP_006401673.1|	-	0.03	14.2	0.0	1.4	8.8	0.0	2.4	2	0	0	2	2	2	0	Rad17	P-loop	domain
MobB	PF03205.14	gi|390937935|ref|YP_006401673.1|	-	0.031	14.2	1.6	3.3	7.6	0.1	2.8	3	0	0	3	3	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
cobW	PF02492.19	gi|390937935|ref|YP_006401673.1|	-	0.038	13.6	3.7	0.57	9.7	0.3	2.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Pox_A32	PF04665.12	gi|390937935|ref|YP_006401673.1|	-	0.04	13.4	1.9	1.6	8.1	0.2	2.3	2	0	0	2	2	2	0	Poxvirus	A32	protein
NB-ARC	PF00931.22	gi|390937935|ref|YP_006401673.1|	-	0.067	12.4	0.8	0.92	8.6	0.0	2.3	2	0	0	2	2	2	0	NB-ARC	domain
AAA_11	PF13086.6	gi|390937935|ref|YP_006401673.1|	-	0.068	12.9	0.0	1.9	8.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|390937935|ref|YP_006401673.1|	-	0.074	13.3	0.0	8.5	6.7	0.0	3.1	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
ATPase	PF06745.13	gi|390937935|ref|YP_006401673.1|	-	0.085	12.2	0.7	4.3	6.6	0.2	2.3	2	0	0	2	2	2	0	KaiC
SRP54	PF00448.22	gi|390937935|ref|YP_006401673.1|	-	0.094	12.3	1.2	0.31	10.6	0.2	2.0	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Dynamin_N	PF00350.23	gi|390937935|ref|YP_006401673.1|	-	0.096	12.7	0.0	0.2	11.7	0.0	1.6	1	0	0	1	1	1	0	Dynamin	family
SRPRB	PF09439.10	gi|390937935|ref|YP_006401673.1|	-	0.11	11.9	3.0	36	3.7	0.0	3.4	4	0	0	4	4	3	0	Signal	recognition	particle	receptor	beta	subunit
AAA_13	PF13166.6	gi|390937935|ref|YP_006401673.1|	-	0.12	11.0	0.0	8.8	4.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|390937935|ref|YP_006401673.1|	-	0.13	12.0	0.2	0.79	9.4	0.0	2.1	2	0	0	2	2	2	0	Cytidylate	kinase
PRK	PF00485.18	gi|390937935|ref|YP_006401673.1|	-	0.13	11.9	0.0	16	5.2	0.0	2.4	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_10	PF12846.7	gi|390937935|ref|YP_006401673.1|	-	0.15	10.9	0.5	0.77	8.6	0.0	2.0	2	0	0	2	2	2	0	AAA-like	domain
Zeta_toxin	PF06414.12	gi|390937935|ref|YP_006401673.1|	-	0.16	11.3	0.1	4.2	6.6	0.0	2.3	2	0	0	2	2	2	0	Zeta	toxin
MMR_HSR1	PF01926.23	gi|390937935|ref|YP_006401673.1|	-	0.16	12.1	2.3	0.26	11.4	0.2	2.3	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
MeaB	PF03308.16	gi|390937935|ref|YP_006401673.1|	-	0.16	10.9	0.1	0.33	9.9	0.1	1.5	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
PGM_PMM_I	PF02878.16	gi|390937936|ref|YP_006401674.1|	-	7.1e-12	45.2	0.0	2.6e-11	43.4	0.0	1.9	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|390937936|ref|YP_006401674.1|	-	0.00013	22.5	0.0	0.00029	21.4	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
CotE	PF10628.9	gi|390937936|ref|YP_006401674.1|	-	0.066	12.9	0.2	1.7	8.3	0.0	2.2	2	0	0	2	2	2	0	Outer	spore	coat	protein	E	(CotE)
NTP_transferase	PF00483.23	gi|390937937|ref|YP_006401675.1|	-	2.5e-37	128.8	0.0	3.4e-37	128.4	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|390937937|ref|YP_006401675.1|	-	1.9e-12	47.8	0.0	2.6e-12	47.4	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|390937937|ref|YP_006401675.1|	-	2.7e-08	33.2	8.3	4.9e-06	26.1	1.5	3.6	1	1	0	2	2	2	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|390937937|ref|YP_006401675.1|	-	5.7e-05	22.8	0.8	0.00013	21.6	0.8	1.7	1	0	0	1	1	1	1	Hexapeptide	repeat	of	succinyl-transferase
CTP_transf_3	PF02348.19	gi|390937937|ref|YP_006401675.1|	-	0.023	14.6	0.1	0.075	12.9	0.0	1.8	2	0	0	2	2	2	0	Cytidylyltransferase
DUF4954	PF16314.5	gi|390937937|ref|YP_006401675.1|	-	0.027	12.6	0.1	0.047	11.8	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
Fucokinase	PF07959.12	gi|390937937|ref|YP_006401675.1|	-	0.085	11.8	0.0	0.59	9.0	0.1	1.9	2	0	0	2	2	2	0	L-fucokinase
Bactofilin	PF04519.13	gi|390937937|ref|YP_006401675.1|	-	0.089	13.1	1.1	0.3	11.4	0.4	2.1	1	1	1	2	2	2	0	Polymer-forming	cytoskeletal
IspD	PF01128.19	gi|390937937|ref|YP_006401675.1|	-	0.19	11.4	0.0	0.27	10.9	0.0	1.3	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
PLDc_2	PF13091.6	gi|390937938|ref|YP_006401676.1|	-	5.9e-22	78.0	0.0	7.3e-22	77.7	0.0	1.1	1	0	0	1	1	1	1	PLD-like	domain
PLDc	PF00614.22	gi|390937938|ref|YP_006401676.1|	-	0.0001	22.3	0.7	0.00054	20.0	0.2	2.4	2	0	0	2	2	2	1	Phospholipase	D	Active	site	motif
CBM_26	PF16824.5	gi|390937938|ref|YP_006401676.1|	-	0.012	15.7	0.0	0.02	15.1	0.0	1.4	1	0	0	1	1	1	0	C-terminal	carbohydrate-binding	module
UPF0154	PF03672.13	gi|390937938|ref|YP_006401676.1|	-	0.4	10.8	1.8	0.66	10.0	1.8	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0154)
CitMHS	PF03600.16	gi|390937939|ref|YP_006401677.1|	-	5.2e-21	75.1	64.9	3.1e-19	69.3	38.5	2.7	1	1	2	3	3	3	2	Citrate	transporter
ArsB	PF02040.15	gi|390937939|ref|YP_006401677.1|	-	1.5e-05	24.6	39.5	2.4e-05	23.9	39.5	1.3	1	0	0	1	1	1	1	Arsenical	pump	membrane	protein
Phage_holin_2_2	PF10746.9	gi|390937939|ref|YP_006401677.1|	-	0.058	13.1	1.2	0.19	11.4	0.2	2.4	2	0	0	2	2	2	0	Phage	holin	T7	family,	holin	superfamily	II
Na_sulph_symp	PF00939.19	gi|390937939|ref|YP_006401677.1|	-	2.4	7.1	47.4	0.014	14.4	20.1	2.9	2	2	0	2	2	2	0	Sodium:sulfate	symporter	transmembrane	region
Lig_chan	PF00060.26	gi|390937939|ref|YP_006401677.1|	-	7.1	6.5	6.8	0.58	10.0	0.1	2.7	3	0	0	3	3	3	0	Ligand-gated	ion	channel
NTPase_I-T	PF01931.18	gi|390937940|ref|YP_006401678.1|	-	5.9e-45	153.0	0.0	6.7e-45	152.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF84
OTCace	PF00185.24	gi|390937941|ref|YP_006401679.1|	-	1.3e-37	129.3	0.0	5.7e-37	127.2	0.0	1.8	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.21	gi|390937941|ref|YP_006401679.1|	-	1.5e-33	115.9	0.0	2.3e-33	115.3	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
Band_7	PF01145.25	gi|390937942|ref|YP_006401680.1|	-	0.076	13.0	0.0	0.077	13.0	0.0	1.0	1	0	0	1	1	1	0	SPFH	domain	/	Band	7	family
RbsD_FucU	PF05025.13	gi|390937942|ref|YP_006401680.1|	-	0.09	13.2	0.3	0.2	12.1	0.3	1.5	1	1	0	1	1	1	0	RbsD	/	FucU	transport	protein	family
PGM_PMM_I	PF02878.16	gi|390937943|ref|YP_006401681.1|	-	9.3e-29	99.9	0.0	1.7e-28	99.1	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|390937943|ref|YP_006401681.1|	-	1e-17	64.6	0.0	2.2e-17	63.6	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|390937943|ref|YP_006401681.1|	-	8.1e-13	48.4	0.3	1.9e-12	47.2	0.3	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.16	gi|390937943|ref|YP_006401681.1|	-	1.3e-05	25.4	0.0	2.9e-05	24.2	0.0	1.6	1	1	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
AAA_16	PF13191.6	gi|390937945|ref|YP_006401683.1|	-	0.014	15.8	0.0	0.15	12.4	0.0	2.5	2	1	0	2	2	2	0	AAA	ATPase	domain
Fe-S_assembly	PF04384.13	gi|390937945|ref|YP_006401683.1|	-	0.045	14.4	0.0	0.18	12.4	0.0	2.0	2	0	0	2	2	2	0	Iron-sulphur	cluster	assembly
MMR_HSR1	PF01926.23	gi|390937945|ref|YP_006401683.1|	-	0.13	12.4	0.7	0.51	10.4	0.0	2.4	3	0	0	3	3	3	0	50S	ribosome-binding	GTPase
ThiC_Rad_SAM	PF01964.18	gi|390937946|ref|YP_006401684.1|	-	1.3e-166	554.6	0.0	1.5e-166	554.4	0.0	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
PRORP	PF16953.5	gi|390937946|ref|YP_006401684.1|	-	0.024	14.1	0.0	0.038	13.5	0.0	1.2	1	0	0	1	1	1	0	Protein-only	RNase	P
LD_cluster3	PF18180.1	gi|390937946|ref|YP_006401684.1|	-	0.13	11.9	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	SLOG	cluster3	family
Aminotran_3	PF00202.21	gi|390937948|ref|YP_006401686.1|	-	6.5e-111	370.9	0.0	7.6e-111	370.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Radical_SAM	PF04055.21	gi|390937949|ref|YP_006401687.1|	-	5e-27	95.3	0.2	1.4e-26	93.9	0.0	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
Radical_SAM_C	PF16199.5	gi|390937949|ref|YP_006401687.1|	-	6.2e-27	93.4	0.5	1.4e-26	92.3	0.5	1.6	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Acetyltransf_1	PF00583.25	gi|390937949|ref|YP_006401687.1|	-	4.5e-07	30.1	0.2	1.7e-06	28.3	0.2	2.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|390937949|ref|YP_006401687.1|	-	0.0014	18.6	0.0	0.0036	17.2	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF763	PF05559.11	gi|390937950|ref|YP_006401688.1|	-	1.3e-108	362.9	0.0	1.5e-108	362.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF763)
DnaB_2	PF07261.11	gi|390937950|ref|YP_006401688.1|	-	0.13	12.1	0.0	0.45	10.3	0.0	1.9	2	0	0	2	2	2	0	Replication	initiation	and	membrane	attachment
Fe-ADH	PF00465.19	gi|390937951|ref|YP_006401689.1|	-	1.4e-88	297.2	0.1	1.8e-88	296.8	0.1	1.0	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.6	gi|390937951|ref|YP_006401689.1|	-	6.5e-15	55.5	2.1	1e-10	41.8	0.2	2.2	2	0	0	2	2	2	2	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|390937951|ref|YP_006401689.1|	-	0.0088	15.2	0.3	0.026	13.7	0.1	1.8	2	0	0	2	2	2	1	3-dehydroquinate	synthase
YrvL	PF14184.6	gi|390937951|ref|YP_006401689.1|	-	0.087	12.9	0.1	0.16	12.1	0.1	1.3	1	0	0	1	1	1	0	Regulatory	protein	YrvL
TBK1_CCD1	PF18394.1	gi|390937951|ref|YP_006401689.1|	-	0.14	11.7	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	TANK-binding	kinase	1	coiled-coil	domain	1
Glyco_trans_2_3	PF13632.6	gi|390937952|ref|YP_006401690.1|	-	2.3e-22	79.9	0.1	3.7e-22	79.2	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.6	gi|390937952|ref|YP_006401690.1|	-	1.2e-10	41.7	0.0	1.6e-10	41.2	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|390937952|ref|YP_006401690.1|	-	0.0094	15.4	0.0	0.038	13.5	0.0	2.0	2	1	0	2	2	2	1	Glycosyl	transferase	family	21
MMM1	PF10296.9	gi|390937953|ref|YP_006401691.1|	-	0.00085	18.5	0.0	0.0012	18.0	0.0	1.1	1	0	0	1	1	1	1	Maintenance	of	mitochondrial	morphology	protein	1
SH3_3	PF08239.11	gi|390937954|ref|YP_006401692.1|	-	0.011	16.0	1.6	0.021	15.1	1.6	1.4	1	0	0	1	1	1	0	Bacterial	SH3	domain
GHMP_kinases_N	PF00288.26	gi|390937955|ref|YP_006401693.1|	-	3.7e-17	62.3	0.2	8e-17	61.2	0.2	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|390937955|ref|YP_006401693.1|	-	6.5e-07	29.6	0.4	3.2e-06	27.4	0.3	2.1	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.9	gi|390937955|ref|YP_006401693.1|	-	0.15	11.6	0.1	0.32	10.6	0.1	1.5	1	0	0	1	1	1	0	Galactokinase	galactose-binding	signature
ParA	PF10609.9	gi|390937956|ref|YP_006401694.1|	-	3.2e-82	275.7	0.0	3.7e-82	275.5	0.0	1.0	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|390937956|ref|YP_006401694.1|	-	3.6e-13	49.7	0.0	7.5e-13	48.7	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.15	gi|390937956|ref|YP_006401694.1|	-	2.8e-07	30.0	1.7	6.6e-07	28.8	0.7	1.8	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_31	PF13614.6	gi|390937956|ref|YP_006401694.1|	-	3.2e-07	30.4	0.6	9e-06	25.7	0.1	2.2	1	1	1	2	2	2	1	AAA	domain
Fer4_NifH	PF00142.18	gi|390937956|ref|YP_006401694.1|	-	5.5e-06	26.0	0.2	0.0021	17.5	0.1	2.4	2	1	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MipZ	PF09140.11	gi|390937956|ref|YP_006401694.1|	-	0.0014	17.9	0.1	0.0023	17.3	0.1	1.5	1	1	0	1	1	1	1	ATPase	MipZ
AAA_25	PF13481.6	gi|390937956|ref|YP_006401694.1|	-	0.0069	16.0	0.0	0.011	15.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|390937956|ref|YP_006401694.1|	-	0.016	14.5	0.0	0.023	14.0	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
AAA_26	PF13500.6	gi|390937956|ref|YP_006401694.1|	-	0.028	14.3	1.6	4.8	7.0	0.0	2.8	2	1	1	3	3	3	0	AAA	domain
NB-ARC	PF00931.22	gi|390937956|ref|YP_006401694.1|	-	0.045	12.9	0.2	0.068	12.4	0.2	1.2	1	0	0	1	1	1	0	NB-ARC	domain
MeaB	PF03308.16	gi|390937956|ref|YP_006401694.1|	-	0.066	12.2	0.1	0.12	11.3	0.1	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
PhoH	PF02562.16	gi|390937956|ref|YP_006401694.1|	-	0.074	12.5	0.2	0.22	10.9	0.1	1.7	2	0	0	2	2	2	0	PhoH-like	protein
IstB_IS21	PF01695.17	gi|390937956|ref|YP_006401694.1|	-	0.19	11.5	0.1	0.49	10.1	0.1	1.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
TsaE	PF02367.17	gi|390937956|ref|YP_006401694.1|	-	0.2	11.6	0.1	0.38	10.8	0.1	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_16	PF13191.6	gi|390937956|ref|YP_006401694.1|	-	0.22	11.9	0.0	0.44	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
DUF432	PF04254.13	gi|390937957|ref|YP_006401695.1|	-	0.011	16.0	0.0	0.019	15.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF432)
Snf7	PF03357.21	gi|390937958|ref|YP_006401696.1|	-	0.0027	17.3	1.9	0.0043	16.7	1.8	1.4	1	1	0	1	1	1	1	Snf7
RPW8	PF05659.11	gi|390937958|ref|YP_006401696.1|	-	0.007	16.1	3.0	0.26	11.0	1.1	2.9	2	1	0	2	2	2	1	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Ubie_methyltran	PF01209.18	gi|390937958|ref|YP_006401696.1|	-	0.017	14.4	0.1	0.019	14.3	0.1	1.1	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Syntaxin_2	PF14523.6	gi|390937958|ref|YP_006401696.1|	-	0.14	12.6	1.5	1.2	9.5	0.4	2.7	1	1	1	2	2	2	0	Syntaxin-like	protein
STT3	PF02516.14	gi|390937959|ref|YP_006401697.1|	-	8.9e-19	67.8	37.4	5e-18	65.3	37.4	2.3	1	1	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
OTCace	PF00185.24	gi|390937960|ref|YP_006401698.1|	-	2.2e-57	193.5	0.0	3.5e-57	192.9	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.21	gi|390937960|ref|YP_006401698.1|	-	3e-50	170.1	0.2	1.7e-49	167.6	0.1	2.0	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
DUF711	PF05167.12	gi|390937961|ref|YP_006401699.1|	-	6.5e-25	87.9	0.0	4.5e-23	81.8	0.0	2.5	1	1	0	1	1	1	1	Uncharacterised	ACR	(DUF711)
UPF0147	PF03685.13	gi|390937962|ref|YP_006401700.1|	-	1.2e-33	115.0	0.4	1.4e-33	114.8	0.4	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0147)
HEAT_PBS	PF03130.16	gi|390937962|ref|YP_006401700.1|	-	0.085	13.6	0.3	0.31	11.8	0.3	2.1	2	1	0	2	2	2	0	PBS	lyase	HEAT-like	repeat
UPF0253	PF06786.12	gi|390937962|ref|YP_006401700.1|	-	0.096	13.0	0.3	7.1	7.0	0.1	2.2	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0253)
Auto_anti-p27	PF06677.12	gi|390937963|ref|YP_006401701.1|	-	3.2e-12	46.4	0.4	4.3e-12	46.0	0.4	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Thymidylate_kin	PF02223.17	gi|390937964|ref|YP_006401702.1|	-	1.6e-42	145.3	0.0	1.8e-42	145.1	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
dNK	PF01712.19	gi|390937964|ref|YP_006401702.1|	-	3.1e-06	27.2	0.0	1.4e-05	25.1	0.0	2.0	1	1	0	1	1	1	1	Deoxynucleoside	kinase
AAA_28	PF13521.6	gi|390937964|ref|YP_006401702.1|	-	5.4e-05	23.5	0.0	6.6e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|390937964|ref|YP_006401702.1|	-	0.00018	22.1	0.0	0.00043	20.8	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
APS_kinase	PF01583.20	gi|390937964|ref|YP_006401702.1|	-	0.00051	20.0	0.0	0.0013	18.6	0.0	1.7	2	0	0	2	2	2	1	Adenylylsulphate	kinase
AAA_33	PF13671.6	gi|390937964|ref|YP_006401702.1|	-	0.0012	19.0	0.0	0.0016	18.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|390937964|ref|YP_006401702.1|	-	0.0014	19.0	0.0	0.013	16.0	0.0	2.4	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|390937964|ref|YP_006401702.1|	-	0.0029	17.9	0.0	0.0044	17.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Arf	PF00025.21	gi|390937964|ref|YP_006401702.1|	-	0.0039	16.7	0.0	0.0057	16.1	0.0	1.3	1	0	0	1	1	1	1	ADP-ribosylation	factor	family
PPK2	PF03976.14	gi|390937964|ref|YP_006401702.1|	-	0.0055	16.2	0.0	0.011	15.2	0.0	1.5	1	0	0	1	1	1	1	Polyphosphate	kinase	2	(PPK2)
NACHT	PF05729.12	gi|390937964|ref|YP_006401702.1|	-	0.012	15.5	0.0	0.025	14.5	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_16	PF13191.6	gi|390937964|ref|YP_006401702.1|	-	0.019	15.4	0.0	0.038	14.4	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
TsaE	PF02367.17	gi|390937964|ref|YP_006401702.1|	-	0.019	15.0	0.0	0.039	13.9	0.0	1.5	2	0	0	2	2	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
MobB	PF03205.14	gi|390937964|ref|YP_006401702.1|	-	0.07	13.0	0.0	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
PRK	PF00485.18	gi|390937964|ref|YP_006401702.1|	-	0.074	12.8	0.0	0.25	11.1	0.0	1.8	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
NTPase_1	PF03266.15	gi|390937964|ref|YP_006401702.1|	-	0.077	12.9	0.0	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	NTPase
DUF244	PF03112.14	gi|390937964|ref|YP_006401702.1|	-	0.094	12.6	0.2	0.19	11.6	0.2	1.6	1	1	0	1	1	1	0	Uncharacterized	protein	family	(ORF7)	DUF
KTI12	PF08433.10	gi|390937964|ref|YP_006401702.1|	-	0.097	12.1	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
SKI	PF01202.22	gi|390937964|ref|YP_006401702.1|	-	0.15	12.2	0.0	6.3	6.9	0.0	2.4	2	1	0	2	2	2	0	Shikimate	kinase
AAA	PF00004.29	gi|390937964|ref|YP_006401702.1|	-	0.16	12.4	0.0	0.24	11.8	0.0	1.3	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF126	PF01989.16	gi|390937965|ref|YP_006401703.1|	-	3.6e-26	90.7	0.1	1.2e-25	89.1	0.1	1.8	2	0	0	2	2	2	1	Aconitase	X	swivel	domain
DUF521	PF04412.13	gi|390937966|ref|YP_006401704.1|	-	4.7e-122	407.6	0.0	5.3e-122	407.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
UbiD	PF01977.16	gi|390937967|ref|YP_006401705.1|	-	2.6e-68	230.8	0.0	3.3e-68	230.4	0.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
CLP1_P	PF16575.5	gi|390937968|ref|YP_006401706.1|	-	8.5e-36	123.5	0.0	1.2e-35	123.0	0.0	1.2	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_24	PF13479.6	gi|390937968|ref|YP_006401706.1|	-	0.011	15.5	0.0	0.018	14.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
CbiA	PF01656.23	gi|390937968|ref|YP_006401706.1|	-	0.12	12.4	0.0	0.26	11.4	0.0	1.7	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PduV-EutP	PF10662.9	gi|390937968|ref|YP_006401706.1|	-	0.14	11.9	0.1	0.3	10.8	0.1	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Roc	PF08477.13	gi|390937968|ref|YP_006401706.1|	-	0.14	12.3	0.0	0.29	11.4	0.0	1.5	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
GTP_EFTU	PF00009.27	gi|390937968|ref|YP_006401706.1|	-	0.15	11.6	0.2	0.29	10.6	0.2	1.4	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
DUF460	PF04312.13	gi|390937969|ref|YP_006401707.1|	-	0.085	12.6	0.3	0.36	10.5	0.4	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF460)
ATPase	PF06745.13	gi|390937970|ref|YP_006401708.1|	-	3.7e-06	26.5	0.0	0.0018	17.6	0.0	2.2	1	1	1	2	2	2	2	KaiC
AAA_24	PF13479.6	gi|390937970|ref|YP_006401708.1|	-	0.00044	20.0	0.0	0.0024	17.6	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|390937970|ref|YP_006401708.1|	-	0.0017	18.0	0.0	0.012	15.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|390937970|ref|YP_006401708.1|	-	0.0023	18.4	0.0	0.0039	17.6	0.0	1.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|390937970|ref|YP_006401708.1|	-	0.011	16.1	0.0	0.015	15.7	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
Rad51	PF08423.11	gi|390937970|ref|YP_006401708.1|	-	0.032	13.5	0.3	0.21	10.8	0.3	2.4	1	1	0	1	1	1	0	Rad51
IstB_IS21	PF01695.17	gi|390937970|ref|YP_006401708.1|	-	0.035	13.8	0.0	0.056	13.2	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|390937970|ref|YP_006401708.1|	-	0.058	12.9	0.2	0.11	11.9	0.0	1.5	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_14	PF13173.6	gi|390937970|ref|YP_006401708.1|	-	0.14	12.2	0.0	0.21	11.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.18	gi|390937970|ref|YP_006401708.1|	-	0.15	11.8	0.0	0.21	11.3	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
Kinesin	PF00225.23	gi|390937970|ref|YP_006401708.1|	-	0.17	10.8	0.1	0.24	10.3	0.1	1.2	1	0	0	1	1	1	0	Kinesin	motor	domain
ABC_tran	PF00005.27	gi|390937970|ref|YP_006401708.1|	-	0.19	12.2	0.0	0.37	11.3	0.0	1.3	1	1	0	1	1	1	0	ABC	transporter
RsgA_GTPase	PF03193.16	gi|390937970|ref|YP_006401708.1|	-	0.2	11.5	0.0	0.31	10.9	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
CarS-like	PF01864.17	gi|390937971|ref|YP_006401709.1|	-	4.3e-31	108.2	4.2	1.3e-30	106.7	4.2	1.6	1	1	0	1	1	1	1	CDP-archaeol	synthase
CTP_transf_1	PF01148.20	gi|390937971|ref|YP_006401709.1|	-	3.6e-07	30.2	0.6	3.6e-07	30.2	0.6	2.0	1	1	1	2	2	2	1	Cytidylyltransferase	family
UPF0051	PF01458.17	gi|390937972|ref|YP_006401710.1|	-	2.6e-45	154.8	0.2	3.3e-45	154.5	0.2	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
ABC_tran	PF00005.27	gi|390937973|ref|YP_006401711.1|	-	1.2e-20	74.4	0.0	1.6e-20	74.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390937973|ref|YP_006401711.1|	-	1.7e-09	37.9	2.0	0.00039	20.3	0.5	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390937973|ref|YP_006401711.1|	-	8e-08	32.0	0.1	0.0068	15.9	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|390937973|ref|YP_006401711.1|	-	0.00014	21.5	0.1	0.00029	20.5	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|390937973|ref|YP_006401711.1|	-	0.00014	21.5	0.0	0.00022	20.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|390937973|ref|YP_006401711.1|	-	0.00023	20.8	0.1	0.0011	18.6	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|390937973|ref|YP_006401711.1|	-	0.0012	19.3	0.1	0.002	18.6	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|390937973|ref|YP_006401711.1|	-	0.015	15.2	0.0	0.024	14.6	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_22	PF13401.6	gi|390937973|ref|YP_006401711.1|	-	0.025	14.9	0.3	0.23	11.7	0.3	2.1	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|390937973|ref|YP_006401711.1|	-	0.031	14.2	0.3	0.065	13.1	0.1	1.6	2	0	0	2	2	2	0	NACHT	domain
ABC_ATPase	PF09818.9	gi|390937973|ref|YP_006401711.1|	-	0.032	13.0	0.1	0.046	12.5	0.1	1.2	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
AAA_15	PF13175.6	gi|390937973|ref|YP_006401711.1|	-	0.037	13.8	0.2	0.092	12.4	0.0	1.6	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|390937973|ref|YP_006401711.1|	-	0.038	14.2	0.0	0.06	13.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Adeno_IVa2	PF02456.15	gi|390937973|ref|YP_006401711.1|	-	0.039	12.8	0.0	0.054	12.3	0.0	1.1	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_16	PF13191.6	gi|390937973|ref|YP_006401711.1|	-	0.057	13.8	0.1	0.065	13.6	0.1	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
MutS_V	PF00488.21	gi|390937973|ref|YP_006401711.1|	-	0.087	12.8	0.4	5.5	7.0	0.1	2.1	2	0	0	2	2	2	0	MutS	domain	V
AAA_30	PF13604.6	gi|390937973|ref|YP_006401711.1|	-	0.17	11.6	0.0	0.52	10.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
DEAD_assoc	PF08494.11	gi|390937974|ref|YP_006401712.1|	-	2.4e-49	167.7	0.0	4.8e-49	166.8	0.0	1.5	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.29	gi|390937974|ref|YP_006401712.1|	-	2.6e-29	102.2	0.0	2.2e-28	99.2	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|390937974|ref|YP_006401712.1|	-	1.4e-15	57.6	0.9	4.1e-15	56.1	0.5	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|390937974|ref|YP_006401712.1|	-	1.1e-12	48.3	0.0	3.9e-10	40.0	0.0	2.4	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
AAA	PF00004.29	gi|390937974|ref|YP_006401712.1|	-	0.014	15.8	3.8	2	8.9	0.8	3.7	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SNF2_N	PF00176.23	gi|390937974|ref|YP_006401712.1|	-	0.059	12.1	0.0	0.13	10.9	0.0	1.6	1	1	0	1	1	1	0	SNF2	family	N-terminal	domain
AAA_22	PF13401.6	gi|390937974|ref|YP_006401712.1|	-	0.56	10.5	2.0	7.7	6.8	0.5	3.3	2	1	0	2	2	2	0	AAA	domain
Glyco_tranf_2_3	PF13641.6	gi|390937975|ref|YP_006401713.1|	-	4.7e-16	59.4	0.0	7.7e-16	58.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|390937975|ref|YP_006401713.1|	-	1.2e-14	54.7	7.7	1.2e-14	54.7	7.7	2.2	2	1	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.26	gi|390937975|ref|YP_006401713.1|	-	3.5e-11	43.2	0.0	5.4e-11	42.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|390937975|ref|YP_006401713.1|	-	0.0009	18.8	0.0	0.0024	17.4	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.6	gi|390937975|ref|YP_006401713.1|	-	0.14	12.7	0.1	0.36	11.4	0.1	1.7	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
DNA_ligase_C	PF17879.1	gi|390937975|ref|YP_006401713.1|	-	0.17	12.0	0.0	0.31	11.1	0.0	1.4	1	0	0	1	1	1	0	DNA	ligase	C-terminal	domain
Lactamase_B_3	PF13483.6	gi|390937976|ref|YP_006401714.1|	-	6.5e-39	133.4	0.6	8.2e-39	133.1	0.3	1.3	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|390937976|ref|YP_006401714.1|	-	5.8e-14	52.1	1.7	2.1e-09	37.2	0.0	2.1	1	1	1	2	2	2	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|390937976|ref|YP_006401714.1|	-	0.51	10.3	6.4	3.5	7.6	4.3	2.2	2	0	0	2	2	2	0	Metallo-beta-lactamase	superfamily
PfkB	PF00294.24	gi|390937979|ref|YP_006401717.1|	-	5.3e-06	26.0	0.0	7.2e-06	25.5	0.0	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Thioredoxin_3	PF13192.6	gi|390937980|ref|YP_006401718.1|	-	1.6e-06	28.0	0.0	2.9e-06	27.2	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin	domain
FancD2	PF14631.6	gi|390937980|ref|YP_006401718.1|	-	0.014	12.9	0.0	0.014	12.8	0.0	1.0	1	0	0	1	1	1	0	Fanconi	anaemia	protein	FancD2	nuclease
Glutaredoxin	PF00462.24	gi|390937980|ref|YP_006401718.1|	-	0.19	12.0	0.1	1.4	9.2	0.0	2.4	3	1	0	3	3	3	0	Glutaredoxin
PYNP_C	PF07831.13	gi|390937981|ref|YP_006401719.1|	-	3.9e-13	48.9	0.0	1.1e-12	47.5	0.0	1.8	1	0	0	1	1	1	1	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
Glycos_transf_3	PF00591.21	gi|390937981|ref|YP_006401719.1|	-	7.7e-11	42.1	4.0	4.1e-10	39.7	1.4	2.8	2	1	0	2	2	2	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|390937981|ref|YP_006401719.1|	-	1.6e-10	40.7	0.1	4.6e-10	39.2	0.1	1.8	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
CDC48_N	PF02359.18	gi|390937981|ref|YP_006401719.1|	-	2.2e-07	31.0	0.1	4.8e-07	29.9	0.1	1.5	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
Molydop_binding	PF01568.21	gi|390937981|ref|YP_006401719.1|	-	1.4e-05	25.1	0.5	7.2e-05	22.8	0.1	2.2	2	1	0	2	2	2	1	Molydopterin	dinucleotide	binding	domain
TcpF	PF06340.11	gi|390937981|ref|YP_006401719.1|	-	0.058	12.3	0.0	0.1	11.4	0.0	1.3	1	0	0	1	1	1	0	Vibrio	cholerae	toxin	co-regulated	pilus	biosynthesis	protein	F
AstA	PF04958.12	gi|390937981|ref|YP_006401719.1|	-	0.084	11.4	0.0	0.12	10.8	0.0	1.3	1	0	0	1	1	1	0	Arginine	N-succinyltransferase	beta	subunit
FAD_binding_2	PF00890.24	gi|390937982|ref|YP_006401720.1|	-	1.2e-10	41.1	2.5	3.3e-06	26.4	0.5	2.9	3	1	1	4	4	4	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|390937982|ref|YP_006401720.1|	-	1.7e-10	40.9	0.1	2.7e-10	40.2	0.1	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|390937982|ref|YP_006401720.1|	-	1e-09	37.9	0.1	1.7e-06	27.3	0.0	2.1	2	0	0	2	2	2	2	Lycopene	cyclase	protein
DAO	PF01266.24	gi|390937982|ref|YP_006401720.1|	-	1.6e-08	34.5	2.8	0.00042	20.0	0.8	2.4	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|390937982|ref|YP_006401720.1|	-	1.7e-08	34.2	1.5	9.9e-06	25.0	0.2	3.2	2	1	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|390937982|ref|YP_006401720.1|	-	1.9e-06	28.0	0.5	0.0046	17.1	0.2	2.9	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|390937982|ref|YP_006401720.1|	-	3.3e-06	26.6	0.2	1.2e-05	24.7	0.2	1.9	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|390937982|ref|YP_006401720.1|	-	2.4e-05	23.4	1.0	0.032	13.1	0.1	2.7	2	1	0	2	2	2	2	Tryptophan	halogenase
HI0933_like	PF03486.14	gi|390937982|ref|YP_006401720.1|	-	2.5e-05	23.2	0.1	9.8e-05	21.2	0.1	2.0	3	0	0	3	3	3	1	HI0933-like	protein
Thi4	PF01946.17	gi|390937982|ref|YP_006401720.1|	-	5.3e-05	22.6	0.2	0.00011	21.5	0.2	1.7	1	0	0	1	1	1	1	Thi4	family
GIDA	PF01134.22	gi|390937982|ref|YP_006401720.1|	-	5.7e-05	22.4	0.5	8.4e-05	21.8	0.5	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.27	gi|390937982|ref|YP_006401720.1|	-	0.00055	20.4	0.9	0.15	12.6	0.2	3.0	2	1	1	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|390937982|ref|YP_006401720.1|	-	0.071	13.0	0.1	0.12	12.2	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|390937982|ref|YP_006401720.1|	-	0.081	12.2	0.1	0.21	10.9	0.1	1.7	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.14	gi|390937982|ref|YP_006401720.1|	-	0.14	11.7	0.4	0.41	10.2	0.2	1.8	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DUF429	PF04250.13	gi|390937983|ref|YP_006401721.1|	-	1.1e-08	35.1	0.0	5e-07	29.7	0.0	2.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF429)
DHHA1	PF02272.19	gi|390937984|ref|YP_006401722.1|	-	3.1e-08	34.1	0.1	6.8e-08	33.0	0.1	1.6	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.20	gi|390937984|ref|YP_006401722.1|	-	0.0088	16.3	0.0	0.017	15.4	0.0	1.5	1	0	0	1	1	1	1	DHH	family
T2SSE	PF00437.20	gi|390937986|ref|YP_006401724.1|	-	2.4e-50	171.1	0.0	3.9e-50	170.4	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.27	gi|390937986|ref|YP_006401724.1|	-	0.00011	22.8	0.0	0.00029	21.3	0.0	1.8	1	0	0	1	1	1	1	ABC	transporter
AAA_29	PF13555.6	gi|390937986|ref|YP_006401724.1|	-	0.0022	17.7	0.1	0.0058	16.3	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_7	PF12775.7	gi|390937986|ref|YP_006401724.1|	-	0.0035	16.9	0.1	0.0064	16.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
PIF1	PF05970.14	gi|390937986|ref|YP_006401724.1|	-	0.013	14.7	0.1	0.022	14.0	0.1	1.2	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_28	PF13521.6	gi|390937986|ref|YP_006401724.1|	-	0.013	15.7	0.6	0.049	13.9	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|390937986|ref|YP_006401724.1|	-	0.019	15.4	0.0	0.034	14.5	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|390937986|ref|YP_006401724.1|	-	0.03	14.8	0.1	0.03	14.8	0.1	1.9	2	0	0	2	2	1	0	AAA	domain
AAA_30	PF13604.6	gi|390937986|ref|YP_006401724.1|	-	0.032	13.9	0.2	0.063	13.0	0.2	1.4	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|390937986|ref|YP_006401724.1|	-	0.035	14.0	0.0	0.08	12.8	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
FtsK_SpoIIIE	PF01580.18	gi|390937986|ref|YP_006401724.1|	-	0.043	13.2	0.0	0.095	12.0	0.0	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.9	gi|390937986|ref|YP_006401724.1|	-	0.063	12.2	0.6	0.19	10.6	0.6	1.7	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DEAD	PF00270.29	gi|390937986|ref|YP_006401724.1|	-	0.1	12.4	0.0	0.23	11.2	0.0	1.6	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
CbiA	PF01656.23	gi|390937986|ref|YP_006401724.1|	-	0.11	12.6	0.2	0.68	10.0	0.0	2.4	3	0	0	3	3	3	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_19	PF13245.6	gi|390937986|ref|YP_006401724.1|	-	0.31	11.4	2.7	1	9.7	2.8	1.9	1	1	0	1	1	1	0	AAA	domain
T2SSF	PF00482.23	gi|390937987|ref|YP_006401725.1|	-	2.6e-15	56.5	8.2	9.4e-11	41.8	0.2	4.3	5	0	0	5	5	5	2	Type	II	secretion	system	(T2SS),	protein	F
Pilin_N	PF07790.11	gi|390937988|ref|YP_006401726.1|	-	0.0037	18.2	0.5	0.0079	17.1	0.5	1.7	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Bromo_coat	PF01318.18	gi|390937988|ref|YP_006401726.1|	-	0.12	12.5	0.0	0.18	11.9	0.0	1.3	1	0	0	1	1	1	0	Bromovirus	coat	protein
Proton_antipo_N	PF00662.20	gi|390937988|ref|YP_006401726.1|	-	2.9	8.0	6.6	0.42	10.7	2.3	1.8	2	0	0	2	2	2	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF2341	PF10102.9	gi|390937990|ref|YP_006401728.1|	-	1.9e-18	66.8	2.6	4.1e-18	65.8	0.2	2.8	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF2341)
HlyD_3	PF13437.6	gi|390937992|ref|YP_006401730.1|	-	0.083	13.6	0.0	0.11	13.2	0.0	1.2	1	0	0	1	1	1	0	HlyD	family	secretion	protein
OpgC_C	PF10129.9	gi|390937993|ref|YP_006401731.1|	-	0.041	12.8	0.1	0.046	12.6	0.1	1.0	1	0	0	1	1	1	0	OpgC	protein
DUF3963	PF13124.6	gi|390937996|ref|YP_006401734.1|	-	0.11	12.4	0.0	0.28	11.2	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3963)
DNA_RNApol_7kD	PF03604.13	gi|390937996|ref|YP_006401734.1|	-	0.12	12.0	3.0	1.4	8.7	3.4	2.2	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_2	PF13240.6	gi|390937996|ref|YP_006401734.1|	-	0.14	11.9	4.0	1.1	9.1	0.6	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|390937996|ref|YP_006401734.1|	-	0.22	11.5	2.6	3.5	7.6	0.5	2.9	3	0	0	3	3	3	0	Putative	transposase	DNA-binding	domain
zf-IS66	PF13005.7	gi|390937996|ref|YP_006401734.1|	-	1.5	9.3	3.3	34	4.9	0.1	3.0	2	1	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
MIT	PF04212.18	gi|390937997|ref|YP_006401735.1|	-	0.00051	20.1	6.6	0.078	13.1	0.0	3.6	3	1	0	3	3	3	2	MIT	(microtubule	interacting	and	transport)	domain
TPR_12	PF13424.6	gi|390937997|ref|YP_006401735.1|	-	0.012	15.9	4.7	0.18	12.1	0.0	3.3	3	0	0	3	3	3	0	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|390937997|ref|YP_006401735.1|	-	0.057	13.7	11.2	0.12	12.6	0.3	4.2	4	0	0	4	4	4	0	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|390937997|ref|YP_006401735.1|	-	0.15	12.2	10.9	0.73	10.1	0.4	3.7	3	0	0	3	3	3	0	Tetratricopeptide	repeat
DUF1657	PF07870.11	gi|390937997|ref|YP_006401735.1|	-	0.15	11.9	0.4	0.15	11.9	0.4	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1657)
Exonuc_VII_S	PF02609.16	gi|390937997|ref|YP_006401735.1|	-	0.85	9.7	3.7	9.4	6.4	0.1	3.1	3	0	0	3	3	3	0	Exonuclease	VII	small	subunit
TPR_1	PF00515.28	gi|390937997|ref|YP_006401735.1|	-	7	6.6	10.6	2.6	8.0	0.5	3.6	3	0	0	3	3	3	0	Tetratricopeptide	repeat
Band_7_1	PF13421.6	gi|390937998|ref|YP_006401736.1|	-	1.5e-34	119.5	0.0	2.8e-34	118.7	0.0	1.4	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
Band_7	PF01145.25	gi|390937998|ref|YP_006401736.1|	-	9.5e-15	55.0	0.0	1.5e-14	54.4	0.0	1.3	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
SHOCT	PF09851.9	gi|390937998|ref|YP_006401736.1|	-	4.9e-08	32.5	7.5	1.1e-07	31.3	7.5	1.7	1	0	0	1	1	1	1	Short	C-terminal	domain
GvpG	PF05120.12	gi|390937998|ref|YP_006401736.1|	-	0.0015	18.5	0.9	0.0057	16.6	0.3	2.1	2	0	0	2	2	2	1	Gas	vesicle	protein	G
DMAP_binding	PF06464.11	gi|390937998|ref|YP_006401736.1|	-	0.0041	17.9	3.2	0.0072	17.1	3.2	1.4	1	0	0	1	1	1	1	DMAP1-binding	Domain
SPACA7	PF15307.6	gi|390937998|ref|YP_006401736.1|	-	0.072	13.4	1.1	0.22	11.8	0.0	2.1	2	1	0	2	2	2	0	Sperm	acrosome-associated	protein	7
Takusan	PF04822.13	gi|390937999|ref|YP_006401737.1|	-	0.0081	16.0	2.0	0.32	10.9	0.1	2.9	2	1	1	3	3	3	1	Takusan
ALIX_LYPXL_bnd	PF13949.6	gi|390937999|ref|YP_006401737.1|	-	0.082	12.2	0.2	0.14	11.4	0.2	1.5	1	1	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
PIN	PF01850.21	gi|390938000|ref|YP_006401738.1|	-	2e-13	50.9	0.1	2.2e-13	50.8	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|390938001|ref|YP_006401739.1|	-	1.6e-10	40.7	1.0	2.5e-10	40.0	1.0	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PalH	PF08733.10	gi|390938002|ref|YP_006401740.1|	-	0.046	12.7	3.8	0.055	12.5	3.8	1.1	1	0	0	1	1	1	0	PalH/RIM21
DUF2206	PF09971.9	gi|390938002|ref|YP_006401740.1|	-	0.25	10.1	10.0	0.3	9.8	10.0	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2206)
SHR3_chaperone	PF08229.11	gi|390938002|ref|YP_006401740.1|	-	0.67	8.9	2.9	0.2	10.6	0.3	1.5	2	0	0	2	2	2	0	ER	membrane	protein	SH3
TrmB	PF01978.19	gi|390938005|ref|YP_006401743.1|	-	0.00021	21.1	0.1	0.00067	19.5	0.1	1.9	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|390938005|ref|YP_006401743.1|	-	0.00077	19.1	0.1	0.0016	18.1	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_36	PF13730.6	gi|390938005|ref|YP_006401743.1|	-	0.02	14.8	0.0	0.042	13.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
PadR	PF03551.14	gi|390938005|ref|YP_006401743.1|	-	0.03	14.3	0.0	0.073	13.0	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_29	PF13551.6	gi|390938005|ref|YP_006401743.1|	-	0.063	13.3	0.2	0.15	12.1	0.2	1.6	1	0	0	1	1	1	0	Winged	helix-turn	helix
Snapin_Pallidin	PF14712.6	gi|390938005|ref|YP_006401743.1|	-	0.27	11.7	4.5	9.4	6.7	0.2	2.5	1	1	1	2	2	2	0	Snapin/Pallidin
KIAA1430	PF13879.6	gi|390938005|ref|YP_006401743.1|	-	6.7	7.5	8.1	6.2	7.6	2.8	2.4	2	0	0	2	2	2	0	KIAA1430	homologue
AAA	PF00004.29	gi|390938006|ref|YP_006401744.1|	-	2.6e-33	115.3	0.0	4.3e-33	114.5	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MIT	PF04212.18	gi|390938006|ref|YP_006401744.1|	-	1.7e-14	53.6	1.6	4.1e-14	52.4	1.6	1.7	1	0	0	1	1	1	1	MIT	(microtubule	interacting	and	transport)	domain
AAA_lid_3	PF17862.1	gi|390938006|ref|YP_006401744.1|	-	7.3e-08	32.1	0.0	1.5e-07	31.1	0.0	1.6	1	0	0	1	1	1	1	AAA+	lid	domain
Vps4_C	PF09336.10	gi|390938006|ref|YP_006401744.1|	-	1.8e-06	27.8	0.1	5.4e-06	26.3	0.1	1.9	1	0	0	1	1	1	1	Vps4	C	terminal	oligomerisation	domain
RuvB_N	PF05496.12	gi|390938006|ref|YP_006401744.1|	-	4.5e-05	23.2	0.0	0.00013	21.8	0.0	1.9	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|390938006|ref|YP_006401744.1|	-	4.6e-05	23.6	0.0	0.00013	22.1	0.0	1.7	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.6	gi|390938006|ref|YP_006401744.1|	-	0.00013	22.3	0.1	0.0064	16.8	0.0	3.1	2	2	1	3	3	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|390938006|ref|YP_006401744.1|	-	0.00022	21.1	0.0	0.00051	19.9	0.0	1.6	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
IstB_IS21	PF01695.17	gi|390938006|ref|YP_006401744.1|	-	0.00027	20.7	0.0	0.00043	20.1	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
TIP49	PF06068.13	gi|390938006|ref|YP_006401744.1|	-	0.00034	19.9	0.7	0.0038	16.5	0.1	2.4	2	1	1	3	3	3	1	TIP49	P-loop	domain
AAA_18	PF13238.6	gi|390938006|ref|YP_006401744.1|	-	0.00067	20.2	0.1	0.0045	17.5	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|390938006|ref|YP_006401744.1|	-	0.00079	19.9	0.0	0.49	10.8	0.0	2.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|390938006|ref|YP_006401744.1|	-	0.0008	19.4	0.0	0.0035	17.4	0.0	2.2	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Rad17	PF03215.15	gi|390938006|ref|YP_006401744.1|	-	0.0012	18.8	0.0	0.0031	17.5	0.0	1.7	1	0	0	1	1	1	1	Rad17	P-loop	domain
TPR_1	PF00515.28	gi|390938006|ref|YP_006401744.1|	-	0.0026	17.5	2.2	0.0044	16.8	0.6	2.3	2	0	0	2	2	1	1	Tetratricopeptide	repeat
ATPase_2	PF01637.18	gi|390938006|ref|YP_006401744.1|	-	0.0043	17.0	1.4	2.6	7.9	0.1	2.8	2	1	1	3	3	3	2	ATPase	domain	predominantly	from	Archaea
AAA_33	PF13671.6	gi|390938006|ref|YP_006401744.1|	-	0.0043	17.2	0.0	0.012	15.8	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|390938006|ref|YP_006401744.1|	-	0.0067	16.2	0.0	0.019	14.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|390938006|ref|YP_006401744.1|	-	0.009	16.4	0.0	0.032	14.6	0.0	2.0	2	0	0	2	2	1	1	RNA	helicase
AAA_28	PF13521.6	gi|390938006|ref|YP_006401744.1|	-	0.011	15.9	0.0	0.022	15.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
TPR_2	PF07719.17	gi|390938006|ref|YP_006401744.1|	-	0.018	15.1	1.5	0.067	13.3	0.2	2.7	2	1	1	3	3	3	0	Tetratricopeptide	repeat
AAA_25	PF13481.6	gi|390938006|ref|YP_006401744.1|	-	0.018	14.6	0.1	0.098	12.2	0.0	1.9	1	1	1	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|390938006|ref|YP_006401744.1|	-	0.02	14.4	0.0	0.053	13.0	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
TPR_6	PF13174.6	gi|390938006|ref|YP_006401744.1|	-	0.025	15.2	2.8	2.7	8.8	0.0	3.9	4	1	1	5	5	3	0	Tetratricopeptide	repeat
AAA_14	PF13173.6	gi|390938006|ref|YP_006401744.1|	-	0.028	14.5	0.0	0.066	13.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
TPR_8	PF13181.6	gi|390938006|ref|YP_006401744.1|	-	0.028	14.6	3.0	0.09	13.0	0.5	3.1	2	0	0	2	2	2	0	Tetratricopeptide	repeat
DUF815	PF05673.13	gi|390938006|ref|YP_006401744.1|	-	0.03	13.5	0.0	0.055	12.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
DUF5113	PF17140.4	gi|390938006|ref|YP_006401744.1|	-	0.036	13.9	1.1	0.083	12.7	1.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5113)
IPT	PF01745.16	gi|390938006|ref|YP_006401744.1|	-	0.073	12.5	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	Isopentenyl	transferase
Mg_chelatase	PF01078.21	gi|390938006|ref|YP_006401744.1|	-	0.12	11.8	0.0	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ATP-synt_ab	PF00006.25	gi|390938006|ref|YP_006401744.1|	-	0.18	11.4	0.0	0.5	10.0	0.0	1.7	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Hydin_ADK	PF17213.3	gi|390938006|ref|YP_006401744.1|	-	0.18	12.0	0.0	0.37	11.0	0.0	1.5	1	0	0	1	1	1	0	Hydin	Adenylate	kinase-like	domain
Cren7	PF11520.8	gi|390938007|ref|YP_006401745.1|	-	1.6e-33	114.4	2.7	1.8e-33	114.3	2.7	1.0	1	0	0	1	1	1	1	Chromatin	protein	Cren7
DHO_dh	PF01180.21	gi|390938008|ref|YP_006401746.1|	-	3.3e-34	118.5	0.0	5.8e-29	101.2	0.0	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
Fer4_21	PF14697.6	gi|390938008|ref|YP_006401746.1|	-	5.3e-12	45.7	8.6	1.4e-11	44.3	8.6	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|390938008|ref|YP_006401746.1|	-	2.7e-11	43.9	11.4	6e-11	42.8	11.4	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|390938008|ref|YP_006401746.1|	-	1.1e-10	40.8	19.4	4.6e-06	26.2	1.8	2.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|390938008|ref|YP_006401746.1|	-	1.4e-08	34.7	9.9	2.7e-08	33.8	9.9	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|390938008|ref|YP_006401746.1|	-	2.1e-08	33.8	12.8	0.00022	21.1	2.4	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|390938008|ref|YP_006401746.1|	-	2.9e-07	30.5	11.2	4.4e-07	29.9	9.9	1.9	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|390938008|ref|YP_006401746.1|	-	7.6e-07	28.9	18.0	0.00026	20.9	4.2	2.7	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|390938008|ref|YP_006401746.1|	-	1.9e-06	28.7	6.4	0.0051	17.7	2.1	2.6	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
NMO	PF03060.15	gi|390938008|ref|YP_006401746.1|	-	6.2e-06	25.8	0.4	1.1e-05	25.0	0.4	1.5	1	0	0	1	1	1	1	Nitronate	monooxygenase
Fer4_22	PF17179.4	gi|390938008|ref|YP_006401746.1|	-	0.00033	21.4	7.0	0.2	12.5	0.4	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
His_biosynth	PF00977.21	gi|390938008|ref|YP_006401746.1|	-	0.00062	19.3	0.0	0.0023	17.4	0.0	1.9	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
Fer4_8	PF13183.6	gi|390938008|ref|YP_006401746.1|	-	0.00085	19.7	13.2	0.021	15.3	13.0	2.8	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|390938008|ref|YP_006401746.1|	-	0.0026	18.3	12.0	0.12	12.9	12.0	2.3	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
FMN_dh	PF01070.18	gi|390938008|ref|YP_006401746.1|	-	0.0089	15.1	4.1	0.043	12.8	3.6	2.3	2	1	0	2	2	2	1	FMN-dependent	dehydrogenase
Fer4_4	PF12800.7	gi|390938008|ref|YP_006401746.1|	-	0.021	15.3	19.2	0.13	12.8	3.2	2.8	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|390938008|ref|YP_006401746.1|	-	0.038	14.9	20.9	0.055	14.4	4.6	3.0	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|390938008|ref|YP_006401746.1|	-	0.039	14.5	10.0	1.3	9.6	1.9	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Glu_synthase	PF01645.17	gi|390938008|ref|YP_006401746.1|	-	0.077	12.1	0.1	0.12	11.5	0.1	1.2	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
Fer4_15	PF13459.6	gi|390938008|ref|YP_006401746.1|	-	0.14	12.9	10.9	0.2	12.4	1.5	2.8	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
IMPDH	PF00478.25	gi|390938008|ref|YP_006401746.1|	-	0.63	9.0	1.9	0.46	9.4	0.3	1.5	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
PGK	PF00162.19	gi|390938009|ref|YP_006401747.1|	-	1.4e-94	317.2	0.0	1.6e-94	317.0	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
Gp_dh_C	PF02800.20	gi|390938010|ref|YP_006401748.1|	-	5.1e-16	58.7	0.0	7.4e-16	58.1	0.0	1.2	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.20	gi|390938010|ref|YP_006401748.1|	-	6.9e-06	26.2	0.0	2.1e-05	24.7	0.0	1.8	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.24	gi|390938010|ref|YP_006401748.1|	-	0.00028	21.2	0.1	0.001	19.3	0.1	2.0	2	0	0	2	2	2	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Usp	PF00582.26	gi|390938011|ref|YP_006401749.1|	-	1.7e-19	70.7	0.4	2.4e-17	63.7	0.4	2.1	1	1	0	1	1	1	1	Universal	stress	protein	family
Glycos_transf_1	PF00534.20	gi|390938012|ref|YP_006401750.1|	-	1.2e-12	47.7	0.0	2.5e-12	46.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Phosphorylase	PF00343.20	gi|390938012|ref|YP_006401750.1|	-	3.3e-11	42.2	0.0	7.4e-10	37.8	0.0	2.1	2	0	0	2	2	2	2	Carbohydrate	phosphorylase
Glyco_trans_1_4	PF13692.6	gi|390938012|ref|YP_006401750.1|	-	6.6e-07	29.8	0.0	1.5e-06	28.7	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Peptidase_M28	PF04389.17	gi|390938013|ref|YP_006401751.1|	-	1.6e-05	24.7	0.2	0.003	17.3	0.0	2.5	2	1	0	2	2	2	2	Peptidase	family	M28
DUF4910	PF16254.5	gi|390938013|ref|YP_006401751.1|	-	0.0005	19.0	0.2	0.04	12.8	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4910)
tRNA_synthFbeta	PF17759.1	gi|390938014|ref|YP_006401752.1|	-	2.6e-39	134.9	0.0	5.2e-39	133.9	0.0	1.4	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|390938014|ref|YP_006401752.1|	-	1.5e-15	57.3	6.0	1.4e-10	41.3	0.3	3.6	5	0	0	5	5	5	2	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|390938014|ref|YP_006401752.1|	-	2.7e-15	56.5	0.1	4.4e-15	55.8	0.1	1.3	1	0	0	1	1	1	1	B3/4	domain
tRNA-synt_2d	PF01409.20	gi|390938014|ref|YP_006401752.1|	-	1.1e-05	25.1	0.0	3.2e-05	23.6	0.0	1.7	1	1	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
PhetRS_B1	PF18262.1	gi|390938014|ref|YP_006401752.1|	-	0.00044	20.4	0.0	0.0073	16.5	0.0	2.5	1	1	0	1	1	1	1	Phe-tRNA	synthetase	beta	subunit	B1	domain
DUF1500	PF07389.12	gi|390938014|ref|YP_006401752.1|	-	0.019	15.0	0.3	0.063	13.3	0.3	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1500)
Na_H_Exchanger	PF00999.21	gi|390938015|ref|YP_006401753.1|	-	1.4e-32	112.9	51.6	1.8e-32	112.6	51.6	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DUF4519	PF15012.6	gi|390938015|ref|YP_006401753.1|	-	3.8	7.7	4.6	3.2	8.0	0.3	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4519)
Ndc1_Nup	PF09531.10	gi|390938016|ref|YP_006401754.1|	-	0.01	14.6	0.1	0.013	14.3	0.1	1.1	1	0	0	1	1	1	0	Nucleoporin	protein	Ndc1-Nup
HTH_3	PF01381.22	gi|390938017|ref|YP_006401755.1|	-	0.00015	21.8	0.0	0.00028	20.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|390938017|ref|YP_006401755.1|	-	0.0023	17.6	0.0	0.0054	16.4	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
Cro	PF09048.10	gi|390938017|ref|YP_006401755.1|	-	0.0036	17.3	0.0	0.0073	16.3	0.0	1.5	1	0	0	1	1	1	1	Cro
HTH_37	PF13744.6	gi|390938017|ref|YP_006401755.1|	-	0.044	13.8	0.0	0.12	12.3	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|390938017|ref|YP_006401755.1|	-	0.057	13.2	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
DNA_binding_1	PF01035.20	gi|390938018|ref|YP_006401756.1|	-	2.8e-21	75.4	0.0	3.6e-21	75.1	0.0	1.2	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
MoCF_biosynth	PF00994.24	gi|390938019|ref|YP_006401757.1|	-	3.7e-26	91.5	0.1	4.3e-26	91.3	0.1	1.0	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
HAD_2	PF13419.6	gi|390938020|ref|YP_006401758.1|	-	2.9e-14	53.5	0.0	5.4e-14	52.7	0.0	1.4	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|390938020|ref|YP_006401758.1|	-	3.9e-09	37.1	0.0	2.5e-08	34.4	0.0	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|390938020|ref|YP_006401758.1|	-	1.5e-06	28.1	0.0	2.6e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
MatE	PF01554.18	gi|390938021|ref|YP_006401759.1|	-	7.1e-39	133.0	35.2	6.7e-23	81.1	10.0	2.8	4	0	0	4	4	4	2	MatE
Polysacc_synt_C	PF14667.6	gi|390938021|ref|YP_006401759.1|	-	6e-10	39.4	9.4	6e-10	39.4	9.4	5.7	3	2	2	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
DUF1464	PF07318.12	gi|390938022|ref|YP_006401760.1|	-	2.1e-85	286.8	1.9	2.4e-85	286.6	1.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1464)
BcrAD_BadFG	PF01869.20	gi|390938022|ref|YP_006401760.1|	-	0.021	14.3	0.0	0.029	13.9	0.0	1.5	1	1	0	1	1	1	0	BadF/BadG/BcrA/BcrD	ATPase	family
DUF447	PF04289.12	gi|390938023|ref|YP_006401761.1|	-	2.3e-13	50.3	0.0	2.5e-13	50.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
GHMP_kinases_C	PF08544.13	gi|390938024|ref|YP_006401762.1|	-	7.7e-07	29.4	0.0	2.2e-06	27.9	0.0	1.7	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
GHMP_kinases_N	PF00288.26	gi|390938024|ref|YP_006401762.1|	-	0.016	15.4	0.3	0.037	14.3	0.0	1.8	2	0	0	2	2	2	0	GHMP	kinases	N	terminal	domain
Cas_Csy4	PF09618.10	gi|390938024|ref|YP_006401762.1|	-	0.17	12.0	0.0	15	5.7	0.0	2.1	2	0	0	2	2	2	0	CRISPR-associated	protein	(Cas_Csy4)
DUF3384	PF11864.8	gi|390938024|ref|YP_006401762.1|	-	0.25	10.2	0.0	0.34	9.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3384)
G_glu_transpept	PF01019.21	gi|390938025|ref|YP_006401763.1|	-	1.2e-80	271.7	0.0	1.4e-80	271.6	0.0	1.0	1	0	0	1	1	1	1	Gamma-glutamyltranspeptidase
TOBE_2	PF08402.10	gi|390938025|ref|YP_006401763.1|	-	0.13	12.4	0.0	0.29	11.3	0.0	1.6	1	0	0	1	1	1	0	TOBE	domain
Mob_synth_C	PF06463.13	gi|390938025|ref|YP_006401763.1|	-	0.2	11.6	0.0	0.35	10.8	0.0	1.3	1	0	0	1	1	1	0	Molybdenum	Cofactor	Synthesis	C
CoA_transf_3	PF02515.17	gi|390938026|ref|YP_006401764.1|	-	2.3e-117	392.2	0.0	2.6e-117	392.0	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
DUF2096	PF09869.9	gi|390938026|ref|YP_006401764.1|	-	0.15	12.1	0.0	2.6	8.1	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2096)
RIFIN	PF02009.16	gi|390938027|ref|YP_006401765.1|	-	0.00023	21.2	0.6	0.00027	20.9	0.6	1.1	1	0	0	1	1	1	1	Rifin
DUF2207	PF09972.9	gi|390938027|ref|YP_006401765.1|	-	0.0062	15.3	0.2	0.0073	15.1	0.2	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2207)
TMEM154	PF15102.6	gi|390938027|ref|YP_006401765.1|	-	0.012	15.5	5.6	0.023	14.6	5.6	1.4	1	0	0	1	1	1	0	TMEM154	protein	family
DUF5305	PF17231.2	gi|390938027|ref|YP_006401765.1|	-	0.038	13.4	5.6	0.058	12.8	5.6	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
TPP_enzyme_C	PF02775.21	gi|390938027|ref|YP_006401765.1|	-	0.074	12.8	0.4	6.6	6.5	0.1	2.2	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
MGC-24	PF05283.11	gi|390938027|ref|YP_006401765.1|	-	0.19	12.1	3.1	0.28	11.6	3.1	1.3	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
Stevor	PF17410.2	gi|390938027|ref|YP_006401765.1|	-	0.59	9.6	4.6	0.82	9.2	4.6	1.2	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
ATPase	PF06745.13	gi|390938028|ref|YP_006401766.1|	-	5.5e-22	78.2	0.1	6.9e-22	77.9	0.1	1.0	1	0	0	1	1	1	1	KaiC
DnaB_C	PF03796.15	gi|390938028|ref|YP_006401766.1|	-	3.2e-07	29.9	0.0	4.6e-07	29.4	0.0	1.1	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.6	gi|390938028|ref|YP_006401766.1|	-	5.6e-06	26.1	0.0	9.4e-06	25.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|390938028|ref|YP_006401766.1|	-	2.8e-05	24.4	0.0	5.7e-05	23.4	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Elong_Iki1	PF10483.9	gi|390938028|ref|YP_006401766.1|	-	5.2e-05	22.9	0.0	7.3e-05	22.4	0.0	1.3	1	1	0	1	1	1	1	Elongator	subunit	Iki1
CbiA	PF01656.23	gi|390938028|ref|YP_006401766.1|	-	0.00018	21.5	0.0	0.00031	20.8	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_14	PF13173.6	gi|390938028|ref|YP_006401766.1|	-	0.00021	21.3	0.0	0.00078	19.5	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|390938028|ref|YP_006401766.1|	-	0.00024	20.9	0.0	0.00052	19.8	0.0	1.5	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_16	PF13191.6	gi|390938028|ref|YP_006401766.1|	-	0.00029	21.3	0.0	0.00058	20.3	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|390938028|ref|YP_006401766.1|	-	0.00031	20.7	0.6	0.042	13.8	0.6	2.8	1	1	0	1	1	1	1	NACHT	domain
SRP54	PF00448.22	gi|390938028|ref|YP_006401766.1|	-	0.0011	18.6	0.0	0.0028	17.3	0.0	1.6	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
NB-ARC	PF00931.22	gi|390938028|ref|YP_006401766.1|	-	0.0074	15.5	0.0	0.0092	15.2	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
PAXNEB	PF05625.11	gi|390938028|ref|YP_006401766.1|	-	0.015	14.4	0.0	0.017	14.3	0.0	1.2	1	0	0	1	1	1	0	PAXNEB	protein
DUF835	PF05763.12	gi|390938028|ref|YP_006401766.1|	-	0.018	14.8	1.7	0.21	11.3	0.1	3.0	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF835)
Zeta_toxin	PF06414.12	gi|390938028|ref|YP_006401766.1|	-	0.026	13.8	0.0	0.052	12.8	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
PglD_N	PF17836.1	gi|390938028|ref|YP_006401766.1|	-	0.026	15.1	0.1	0.057	14.1	0.1	1.6	1	0	0	1	1	1	0	PglD	N-terminal	domain
DUF2075	PF09848.9	gi|390938028|ref|YP_006401766.1|	-	0.048	12.9	0.0	0.069	12.4	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
ABC_tran	PF00005.27	gi|390938028|ref|YP_006401766.1|	-	0.049	14.1	0.0	0.085	13.4	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter
T2SSE	PF00437.20	gi|390938028|ref|YP_006401766.1|	-	0.061	12.4	0.0	0.12	11.4	0.0	1.5	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
ATPase_2	PF01637.18	gi|390938028|ref|YP_006401766.1|	-	0.069	13.1	0.1	0.19	11.6	0.1	1.7	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Sigma54_activat	PF00158.26	gi|390938028|ref|YP_006401766.1|	-	0.096	12.4	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
KAP_NTPase	PF07693.14	gi|390938028|ref|YP_006401766.1|	-	0.099	11.9	0.0	0.26	10.5	0.0	1.4	1	1	0	1	1	1	0	KAP	family	P-loop	domain
AAA_5	PF07728.14	gi|390938028|ref|YP_006401766.1|	-	0.1	12.6	0.0	0.28	11.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.15	gi|390938028|ref|YP_006401766.1|	-	0.1	12.5	0.2	3.7	7.4	0.0	2.6	2	1	0	2	2	2	0	NTPase
ArsA_ATPase	PF02374.15	gi|390938028|ref|YP_006401766.1|	-	0.13	11.5	0.0	0.22	10.7	0.0	1.3	1	0	0	1	1	1	0	Anion-transporting	ATPase
AAA_7	PF12775.7	gi|390938028|ref|YP_006401766.1|	-	0.13	11.8	0.0	0.32	10.5	0.0	1.6	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
Pyr_redox_2	PF07992.14	gi|390938029|ref|YP_006401767.1|	-	1.8e-34	119.3	5.0	2.4e-34	118.9	5.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Fer2_4	PF13510.6	gi|390938029|ref|YP_006401767.1|	-	1.2e-19	70.1	0.0	2.3e-19	69.2	0.0	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Pyr_redox_3	PF13738.6	gi|390938029|ref|YP_006401767.1|	-	5.5e-13	48.8	0.1	9.6e-07	28.3	0.0	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|390938029|ref|YP_006401767.1|	-	2e-10	40.5	4.2	3.6e-07	29.7	0.2	2.2	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|390938029|ref|YP_006401767.1|	-	2.5e-09	37.2	3.8	0.00011	22.4	0.1	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|390938029|ref|YP_006401767.1|	-	2.8e-08	33.6	0.1	2.8e-08	33.6	0.1	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|390938029|ref|YP_006401767.1|	-	4.8e-08	32.5	1.3	8.3e-06	25.2	0.0	2.3	2	0	0	2	2	2	2	Thi4	family
FAD_binding_2	PF00890.24	gi|390938029|ref|YP_006401767.1|	-	6.1e-08	32.2	11.8	4.8e-07	29.2	1.3	3.5	2	2	2	4	4	4	1	FAD	binding	domain
DAO	PF01266.24	gi|390938029|ref|YP_006401767.1|	-	6.4e-08	32.6	9.1	0.0011	18.7	0.1	3.3	2	1	1	3	3	3	3	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|390938029|ref|YP_006401767.1|	-	1e-07	31.4	7.2	1.6e-05	24.2	0.0	3.6	4	0	0	4	4	4	2	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.27	gi|390938029|ref|YP_006401767.1|	-	2.1e-07	31.4	10.5	0.0001	22.8	2.8	2.9	3	0	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.6	gi|390938029|ref|YP_006401767.1|	-	6e-06	26.6	1.4	0.12	12.8	0.3	2.4	2	0	0	2	2	2	2	Putative	NAD(P)-binding
HI0933_like	PF03486.14	gi|390938029|ref|YP_006401767.1|	-	6e-06	25.2	4.6	0.00014	20.7	0.2	2.7	3	0	0	3	3	3	2	HI0933-like	protein
ApbA	PF02558.16	gi|390938029|ref|YP_006401767.1|	-	0.00033	20.3	5.4	0.025	14.2	1.1	2.5	2	1	0	2	2	2	2	Ketopantoate	reductase	PanE/ApbA
Lycopene_cycl	PF05834.12	gi|390938029|ref|YP_006401767.1|	-	0.0036	16.4	0.6	0.0036	16.4	0.6	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Shikimate_DH	PF01488.20	gi|390938029|ref|YP_006401767.1|	-	0.0041	17.2	1.0	0.5	10.4	0.0	2.5	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
Glu_dehyd_C	PF16912.5	gi|390938029|ref|YP_006401767.1|	-	0.011	15.3	0.4	5.1	6.5	0.0	2.7	2	0	0	2	2	2	0	Glucose	dehydrogenase	C-terminus
ThiF	PF00899.21	gi|390938029|ref|YP_006401767.1|	-	0.017	14.5	2.2	1.4	8.2	0.0	2.4	2	0	0	2	2	2	0	ThiF	family
Amino_oxidase	PF01593.24	gi|390938029|ref|YP_006401767.1|	-	0.025	13.9	2.6	3	7.0	0.2	2.8	2	1	1	3	3	3	0	Flavin	containing	amine	oxidoreductase
ELFV_dehydrog	PF00208.21	gi|390938029|ref|YP_006401767.1|	-	0.085	12.6	1.0	3.6	7.2	0.1	2.2	2	0	0	2	2	2	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|390938029|ref|YP_006401767.1|	-	0.2	11.2	3.7	6.6	6.3	0.1	2.3	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|390938029|ref|YP_006401767.1|	-	0.72	10.5	3.5	3.9	8.1	1.3	3.0	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
AlaDh_PNT_C	PF01262.21	gi|390938029|ref|YP_006401767.1|	-	1.2	8.3	5.1	0.39	10.0	0.1	2.2	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.18	gi|390938029|ref|YP_006401767.1|	-	1.4	9.2	4.7	31	4.9	0.1	3.1	2	1	0	2	2	2	0	TrkA-N	domain
NAD_binding_9	PF13454.6	gi|390938029|ref|YP_006401767.1|	-	2.8	7.9	6.3	6	6.8	0.1	3.5	4	0	0	4	4	4	0	FAD-NAD(P)-binding
3HCDH_N	PF02737.18	gi|390938029|ref|YP_006401767.1|	-	3.4	7.5	8.6	5.4	6.9	0.3	2.8	3	0	0	3	3	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Fer4	PF00037.27	gi|390938030|ref|YP_006401768.1|	-	2.4e-11	42.9	15.2	2e-07	30.6	3.6	2.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390938030|ref|YP_006401768.1|	-	3.4e-08	33.9	5.9	7.1e-08	32.9	5.9	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|390938030|ref|YP_006401768.1|	-	1.3e-07	31.7	7.9	2.2e-07	30.9	7.9	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|390938030|ref|YP_006401768.1|	-	3.3e-06	26.9	14.8	0.0018	18.2	3.1	2.6	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|390938030|ref|YP_006401768.1|	-	7e-06	26.1	11.2	1.7e-05	24.9	11.3	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|390938030|ref|YP_006401768.1|	-	1.2e-05	25.3	19.6	0.00037	20.6	10.7	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|390938030|ref|YP_006401768.1|	-	1.3e-05	25.0	15.0	0.00026	20.9	4.0	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|390938030|ref|YP_006401768.1|	-	3.5e-05	24.1	1.2	0.0053	17.2	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|390938030|ref|YP_006401768.1|	-	3.6e-05	23.9	10.2	0.00033	20.9	0.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|390938030|ref|YP_006401768.1|	-	0.00012	22.9	9.7	0.011	16.6	0.6	2.3	1	1	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_15	PF13459.6	gi|390938030|ref|YP_006401768.1|	-	0.008	16.9	0.3	0.008	16.9	0.3	2.7	2	2	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|390938030|ref|YP_006401768.1|	-	0.048	14.2	0.3	0.048	14.2	0.3	2.7	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|390938030|ref|YP_006401768.1|	-	0.07	13.7	11.2	0.12	12.9	2.2	2.4	1	1	3	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|390938030|ref|YP_006401768.1|	-	0.087	13.8	14.4	0.55	11.3	0.7	2.6	2	1	0	2	2	2	0	4Fe-4S	binding	domain
SO_alpha_A3	PF17806.1	gi|390938031|ref|YP_006401769.1|	-	4.6e-14	52.5	0.0	5.4e-14	52.3	0.0	1.0	1	0	0	1	1	1	1	Sarcosine	oxidase	A3	domain
Fer2_BFD	PF04324.15	gi|390938031|ref|YP_006401769.1|	-	3.4e-12	46.5	1.0	4.4e-12	46.2	1.0	1.1	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
DAO	PF01266.24	gi|390938032|ref|YP_006401770.1|	-	1.7e-54	185.7	0.0	2e-54	185.5	0.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|390938032|ref|YP_006401770.1|	-	2.9e-09	36.6	1.8	0.00013	21.4	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|390938032|ref|YP_006401770.1|	-	4.6e-08	32.6	0.1	1.4e-07	31.0	0.1	1.7	1	1	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|390938032|ref|YP_006401770.1|	-	9e-07	27.9	0.2	0.0049	15.6	0.1	2.1	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|390938032|ref|YP_006401770.1|	-	1.4e-06	27.8	1.3	0.0066	15.7	0.1	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|390938032|ref|YP_006401770.1|	-	3.3e-05	23.9	0.2	0.01	15.8	0.0	2.3	2	0	0	2	2	2	2	FAD-NAD(P)-binding
FAD_binding_3	PF01494.19	gi|390938032|ref|YP_006401770.1|	-	4.5e-05	22.9	0.3	0.00012	21.4	0.6	1.6	2	1	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|390938032|ref|YP_006401770.1|	-	0.0019	18.4	0.2	0.005	17.0	0.2	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|390938032|ref|YP_006401770.1|	-	0.0046	16.2	0.7	0.0074	15.5	0.1	1.6	2	0	0	2	2	2	1	Thi4	family
FAD_oxidored	PF12831.7	gi|390938032|ref|YP_006401770.1|	-	0.0075	15.7	0.4	0.012	15.0	0.4	1.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
TetR_C_34	PF17929.1	gi|390938032|ref|YP_006401770.1|	-	0.053	13.6	0.0	0.09	12.9	0.0	1.3	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Trp_halogenase	PF04820.14	gi|390938032|ref|YP_006401770.1|	-	0.055	12.3	0.3	0.086	11.7	0.3	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
Pyr_redox	PF00070.27	gi|390938032|ref|YP_006401770.1|	-	0.071	13.7	1.6	0.84	10.2	0.2	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
MtrD	PF04207.12	gi|390938032|ref|YP_006401770.1|	-	0.36	10.5	2.1	0.41	10.3	0.2	2.0	3	0	0	3	3	3	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	D
MoaE	PF02391.17	gi|390938033|ref|YP_006401771.1|	-	4e-23	81.8	0.1	4.9e-23	81.6	0.1	1.1	1	0	0	1	1	1	1	MoaE	protein
ThiS	PF02597.20	gi|390938034|ref|YP_006401772.1|	-	6e-11	42.8	0.0	6.9e-11	42.6	0.0	1.1	1	0	0	1	1	1	1	ThiS	family
Ub-Mut7C	PF14451.6	gi|390938034|ref|YP_006401772.1|	-	0.0011	18.8	0.0	0.0024	17.7	0.0	1.8	1	1	0	1	1	1	1	Mut7-C	ubiquitin
ThiS-like	PF14453.6	gi|390938034|ref|YP_006401772.1|	-	0.0051	16.8	0.0	0.016	15.3	0.0	1.8	1	1	0	1	1	1	1	ThiS-like	ubiquitin
N_formyltrans_C	PF18216.1	gi|390938034|ref|YP_006401772.1|	-	0.0052	16.4	0.0	0.012	15.3	0.0	1.6	2	0	0	2	2	2	1	N-formyltransferase	dimerization	C-terminal	domain
TGS	PF02824.21	gi|390938034|ref|YP_006401772.1|	-	0.013	15.6	0.1	0.022	14.8	0.1	1.3	1	0	0	1	1	1	0	TGS	domain
vWF_A	PF12450.8	gi|390938034|ref|YP_006401772.1|	-	0.13	12.3	0.0	0.16	12.0	0.0	1.1	1	0	0	1	1	1	0	von	Willebrand	factor
MoaC	PF01967.21	gi|390938035|ref|YP_006401773.1|	-	1.3e-44	151.6	0.9	1.4e-44	151.4	0.9	1.0	1	0	0	1	1	1	1	MoaC	family
Radical_SAM	PF04055.21	gi|390938036|ref|YP_006401774.1|	-	4.2e-21	76.0	0.0	8.4e-21	75.1	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Mob_synth_C	PF06463.13	gi|390938036|ref|YP_006401774.1|	-	8.3e-16	58.1	0.0	1.2e-15	57.5	0.0	1.3	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Fer4_14	PF13394.6	gi|390938036|ref|YP_006401774.1|	-	8.3e-07	29.1	0.0	1.7e-06	28.2	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|390938036|ref|YP_006401774.1|	-	7.8e-06	26.2	0.0	1.5e-05	25.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
ABC_tran	PF00005.27	gi|390938037|ref|YP_006401775.1|	-	6.3e-30	104.5	0.0	9e-30	104.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938037|ref|YP_006401775.1|	-	1e-13	51.8	2.4	7.2e-06	26.0	0.3	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|390938037|ref|YP_006401775.1|	-	0.0003	20.6	0.0	0.0012	18.6	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|390938037|ref|YP_006401775.1|	-	0.00056	20.5	0.4	0.0011	19.5	0.4	1.5	1	0	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|390938037|ref|YP_006401775.1|	-	0.00065	18.6	0.0	0.006	15.4	0.1	2.0	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_29	PF13555.6	gi|390938037|ref|YP_006401775.1|	-	0.00099	18.8	0.1	0.0024	17.6	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|390938037|ref|YP_006401775.1|	-	0.003	18.0	0.0	0.024	15.0	0.0	2.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_27	PF13514.6	gi|390938037|ref|YP_006401775.1|	-	0.006	16.2	0.0	0.0094	15.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|390938037|ref|YP_006401775.1|	-	0.0099	16.3	0.0	0.019	15.4	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|390938037|ref|YP_006401775.1|	-	0.015	15.2	0.3	0.031	14.2	0.1	1.6	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
SMC_N	PF02463.19	gi|390938037|ref|YP_006401775.1|	-	0.015	14.7	0.1	0.055	12.9	0.2	1.8	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_14	PF13173.6	gi|390938037|ref|YP_006401775.1|	-	0.032	14.3	0.0	0.16	12.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|390938037|ref|YP_006401775.1|	-	0.046	14.0	0.3	1	9.6	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|390938037|ref|YP_006401775.1|	-	0.055	13.6	0.0	0.14	12.3	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
RecA	PF00154.21	gi|390938037|ref|YP_006401775.1|	-	0.14	11.6	0.0	0.26	10.7	0.0	1.4	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
T2SSE	PF00437.20	gi|390938037|ref|YP_006401775.1|	-	0.21	10.6	0.1	0.35	9.9	0.1	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
BPD_transp_1	PF00528.22	gi|390938038|ref|YP_006401776.1|	-	1.7e-16	60.5	20.8	1.7e-16	60.5	20.8	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_11	PF13531.6	gi|390938039|ref|YP_006401777.1|	-	6.9e-29	101.2	0.0	8.8e-29	100.9	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|390938039|ref|YP_006401777.1|	-	0.00017	21.7	0.0	0.00039	20.5	0.0	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Phosphonate-bd	PF12974.7	gi|390938039|ref|YP_006401777.1|	-	0.015	14.9	0.0	0.021	14.4	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
LysR_substrate	PF03466.20	gi|390938039|ref|YP_006401777.1|	-	0.032	13.6	0.0	0.18	11.2	0.0	1.8	2	0	0	2	2	2	0	LysR	substrate	binding	domain
MoCF_biosynth	PF00994.24	gi|390938040|ref|YP_006401778.1|	-	4.2e-17	62.1	0.3	6.5e-17	61.5	0.3	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
HU-CCDC81_bac_1	PF18174.1	gi|390938040|ref|YP_006401778.1|	-	0.11	12.4	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	CCDC81-like	prokaryotic	HU	domain	1
BATS	PF06968.13	gi|390938040|ref|YP_006401778.1|	-	0.12	12.5	0.0	0.23	11.6	0.0	1.4	1	0	0	1	1	1	0	Biotin	and	Thiamin	Synthesis	associated	domain
DUF2437	PF10370.9	gi|390938040|ref|YP_006401778.1|	-	0.19	12.7	0.1	6.7	7.7	0.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF2437)
DUF89	PF01937.19	gi|390938041|ref|YP_006401779.1|	-	1.5e-33	116.2	0.0	2.5e-33	115.5	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF89
CbiQ	PF02361.16	gi|390938042|ref|YP_006401780.1|	-	0.31	10.6	4.4	0.38	10.3	4.4	1.0	1	0	0	1	1	1	0	Cobalt	transport	protein
DUF1959	PF09218.10	gi|390938044|ref|YP_006401782.1|	-	0.06	13.5	0.3	0.12	12.5	0.2	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1959)
SIS	PF01380.22	gi|390938045|ref|YP_006401783.1|	-	2.9e-20	72.5	0.0	1.2e-19	70.5	0.0	1.8	2	0	0	2	2	2	1	SIS	domain
SIS_2	PF13580.6	gi|390938045|ref|YP_006401783.1|	-	2.2e-14	53.7	1.3	2.8e-09	37.1	0.5	2.2	1	1	1	2	2	2	2	SIS	domain
PRMT5	PF05185.16	gi|390938045|ref|YP_006401783.1|	-	0.0027	17.6	1.3	0.64	9.9	0.0	2.2	1	1	0	2	2	2	2	PRMT5	arginine-N-methyltransferase
2-Hacid_dh_C	PF02826.19	gi|390938045|ref|YP_006401783.1|	-	0.008	15.6	0.6	2.3	7.5	0.0	2.1	1	1	1	2	2	2	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Radical_SAM	PF04055.21	gi|390938046|ref|YP_006401784.1|	-	4.4e-14	53.2	0.0	7.8e-14	52.4	0.0	1.4	1	1	0	1	1	1	1	Radical	SAM	superfamily
DUF1848	PF08902.11	gi|390938046|ref|YP_006401784.1|	-	7.1e-09	35.8	2.9	0.00038	20.3	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1848)
DIOX_N	PF14226.6	gi|390938046|ref|YP_006401784.1|	-	0.12	13.2	0.0	0.19	12.5	0.0	1.3	1	0	0	1	1	1	0	non-haem	dioxygenase	in	morphine	synthesis	N-terminal
zf-ZPR1	PF03367.13	gi|390938047|ref|YP_006401785.1|	-	1e-30	106.7	0.0	1.2e-30	106.5	0.0	1.0	1	0	0	1	1	1	1	ZPR1	zinc-finger	domain
Rubredoxin_2	PF18073.1	gi|390938047|ref|YP_006401785.1|	-	0.0038	16.9	1.6	1.4	8.7	0.0	2.4	2	0	0	2	2	2	2	Rubredoxin	metal	binding	domain
eIF-3_zeta	PF05091.12	gi|390938047|ref|YP_006401785.1|	-	0.05	12.6	0.2	0.066	12.2	0.2	1.1	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	3	subunit	7	(eIF-3)
RNA_POL_M_15KD	PF02150.16	gi|390938047|ref|YP_006401785.1|	-	0.063	13.2	5.1	2.4	8.1	0.2	2.8	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
DUF1125	PF06563.11	gi|390938047|ref|YP_006401785.1|	-	0.11	12.5	0.2	0.75	9.8	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1125)
Peptidase_M29	PF02073.15	gi|390938048|ref|YP_006401786.1|	-	5.6e-107	358.0	0.0	6.3e-107	357.9	0.0	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
DUF1107	PF06526.12	gi|390938048|ref|YP_006401786.1|	-	0.17	11.8	0.7	55	3.8	0.0	3.7	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF1107)
Ferritin	PF00210.24	gi|390938049|ref|YP_006401787.1|	-	1.8e-35	121.9	2.8	2.1e-35	121.8	2.8	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|390938049|ref|YP_006401787.1|	-	0.0001	22.7	1.2	0.00013	22.4	1.2	1.2	1	0	0	1	1	1	1	Rubrerythrin
CARD	PF00619.21	gi|390938049|ref|YP_006401787.1|	-	0.00021	21.2	0.0	0.00056	19.9	0.0	1.8	1	0	0	1	1	1	1	Caspase	recruitment	domain
Coat_F	PF07875.12	gi|390938049|ref|YP_006401787.1|	-	0.0074	16.5	1.7	3.3	8.0	0.2	2.6	3	0	0	3	3	3	2	Coat	F	domain
CitG	PF01874.16	gi|390938050|ref|YP_006401788.1|	-	2e-54	185.2	0.0	2.3e-54	184.9	0.0	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
Oxidored_molyb	PF00174.19	gi|390938051|ref|YP_006401789.1|	-	5e-34	117.4	0.0	7.1e-34	116.9	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Curto_V2	PF07325.11	gi|390938052|ref|YP_006401790.1|	-	0.05	13.5	0.7	0.094	12.6	0.4	1.6	1	1	0	1	1	1	0	Curtovirus	V2	protein
LIN52	PF10044.9	gi|390938052|ref|YP_006401790.1|	-	0.064	14.0	0.1	0.081	13.6	0.1	1.2	1	0	0	1	1	1	0	Retinal	tissue	protein
Phage_30_8	PF06019.11	gi|390938052|ref|YP_006401790.1|	-	0.12	12.3	0.3	0.2	11.6	0.3	1.4	1	1	0	1	1	1	0	Phage	GP30.8	protein
OTCace	PF00185.24	gi|390938053|ref|YP_006401791.1|	-	3.5e-42	144.2	0.0	6.4e-42	143.3	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.21	gi|390938053|ref|YP_006401791.1|	-	4.1e-36	124.2	0.0	7.1e-36	123.4	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
Methyltransf_31	PF13847.6	gi|390938053|ref|YP_006401791.1|	-	0.053	13.3	0.0	0.31	10.8	0.0	2.1	2	0	0	2	2	2	0	Methyltransferase	domain
Limkain-b1	PF11608.8	gi|390938053|ref|YP_006401791.1|	-	0.21	11.7	0.0	0.39	10.8	0.0	1.4	1	0	0	1	1	1	0	Limkain	b1
SBP_bac_5	PF00496.22	gi|390938054|ref|YP_006401792.1|	-	5.1e-74	249.5	2.1	6.1e-74	249.2	2.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
BPD_transp_1	PF00528.22	gi|390938055|ref|YP_006401793.1|	-	3e-30	105.3	14.9	3e-30	105.3	14.9	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|390938056|ref|YP_006401794.1|	-	2.1e-26	92.8	15.3	2.1e-26	92.8	15.3	1.9	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|390938056|ref|YP_006401794.1|	-	0.0061	16.5	0.3	0.0061	16.5	0.3	3.2	4	1	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF3487	PF11990.8	gi|390938056|ref|YP_006401794.1|	-	7	6.6	12.6	2.7	7.9	0.0	3.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3487)
ABC_tran	PF00005.27	gi|390938057|ref|YP_006401795.1|	-	1.8e-26	93.3	0.0	2.4e-26	92.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|390938057|ref|YP_006401795.1|	-	3e-15	56.5	0.0	5e-15	55.8	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|390938057|ref|YP_006401795.1|	-	5.4e-08	33.0	0.4	0.00016	21.6	0.2	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|390938057|ref|YP_006401795.1|	-	1.2e-05	25.6	0.0	3.1e-05	24.3	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|390938057|ref|YP_006401795.1|	-	1.8e-05	24.3	0.0	2.8e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|390938057|ref|YP_006401795.1|	-	0.00054	20.5	0.0	0.0007	20.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|390938057|ref|YP_006401795.1|	-	0.0013	18.5	0.0	0.0026	17.5	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|390938057|ref|YP_006401795.1|	-	0.0036	17.2	0.0	0.0058	16.6	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|390938057|ref|YP_006401795.1|	-	0.0042	17.5	0.0	0.0087	16.5	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|390938057|ref|YP_006401795.1|	-	0.044	14.2	0.0	0.073	13.5	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_15	PF13175.6	gi|390938057|ref|YP_006401795.1|	-	0.05	13.3	0.0	0.29	10.8	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|390938057|ref|YP_006401795.1|	-	0.058	13.5	0.2	0.24	11.5	0.1	2.0	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
PRK	PF00485.18	gi|390938057|ref|YP_006401795.1|	-	0.11	12.2	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
Mg_chelatase	PF01078.21	gi|390938057|ref|YP_006401795.1|	-	0.13	11.6	0.0	0.74	9.2	0.0	1.9	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
Zeta_toxin	PF06414.12	gi|390938057|ref|YP_006401795.1|	-	0.2	10.9	0.1	7.5	5.8	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
AAA_13	PF13166.6	gi|390938057|ref|YP_006401795.1|	-	0.31	9.6	0.1	1	7.9	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.9	gi|390938057|ref|YP_006401795.1|	-	0.51	9.1	2.3	17	4.0	0.5	2.7	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
ABC_tran	PF00005.27	gi|390938058|ref|YP_006401796.1|	-	1.8e-33	115.9	0.0	2.8e-33	115.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938058|ref|YP_006401796.1|	-	6e-10	39.4	3.2	0.0001	22.2	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|390938058|ref|YP_006401796.1|	-	0.00011	22.7	0.1	0.00017	22.0	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|390938058|ref|YP_006401796.1|	-	0.00037	20.0	0.5	0.013	15.0	0.5	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|390938058|ref|YP_006401796.1|	-	0.00061	19.5	0.0	0.0011	18.7	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.12	gi|390938058|ref|YP_006401796.1|	-	0.00096	19.1	0.1	0.0039	17.1	0.0	1.8	2	0	0	2	2	2	1	NACHT	domain
AAA_25	PF13481.6	gi|390938058|ref|YP_006401796.1|	-	0.001	18.7	0.5	0.0065	16.1	0.5	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|390938058|ref|YP_006401796.1|	-	0.0015	18.8	1.4	0.012	15.9	1.4	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_5	PF07728.14	gi|390938058|ref|YP_006401796.1|	-	0.0022	18.0	1.4	0.04	13.9	0.0	2.5	3	0	0	3	3	2	1	AAA	domain	(dynein-related	subfamily)
RsgA_GTPase	PF03193.16	gi|390938058|ref|YP_006401796.1|	-	0.0028	17.6	0.2	0.007	16.3	0.0	1.7	2	0	0	2	2	2	1	RsgA	GTPase
Pox_A32	PF04665.12	gi|390938058|ref|YP_006401796.1|	-	0.0044	16.5	0.2	0.017	14.6	0.0	1.8	2	0	0	2	2	2	1	Poxvirus	A32	protein
DEAD	PF00270.29	gi|390938058|ref|YP_006401796.1|	-	0.0045	16.8	0.0	1.8	8.3	0.0	2.1	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
oligo_HPY	PF08352.12	gi|390938058|ref|YP_006401796.1|	-	0.0053	17.2	0.0	0.0096	16.4	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_30	PF13604.6	gi|390938058|ref|YP_006401796.1|	-	0.007	16.1	0.0	0.036	13.8	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|390938058|ref|YP_006401796.1|	-	0.0076	16.8	0.0	0.012	16.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|390938058|ref|YP_006401796.1|	-	0.0077	16.0	0.0	0.045	13.4	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
T2SSE	PF00437.20	gi|390938058|ref|YP_006401796.1|	-	0.009	15.1	0.1	0.016	14.3	0.1	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
cobW	PF02492.19	gi|390938058|ref|YP_006401796.1|	-	0.011	15.3	0.0	0.018	14.6	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
TniB	PF05621.11	gi|390938058|ref|YP_006401796.1|	-	0.012	15.0	0.9	0.94	8.8	0.2	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
MobB	PF03205.14	gi|390938058|ref|YP_006401796.1|	-	0.013	15.3	0.0	0.025	14.5	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_24	PF13479.6	gi|390938058|ref|YP_006401796.1|	-	0.016	14.9	0.0	0.027	14.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|390938058|ref|YP_006401796.1|	-	0.017	15.3	0.0	0.023	14.8	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|390938058|ref|YP_006401796.1|	-	0.025	14.0	0.0	0.058	12.8	0.0	1.6	1	1	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ATPase_2	PF01637.18	gi|390938058|ref|YP_006401796.1|	-	0.027	14.4	0.0	0.043	13.7	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_19	PF13245.6	gi|390938058|ref|YP_006401796.1|	-	0.034	14.5	0.1	0.35	11.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|390938058|ref|YP_006401796.1|	-	0.046	13.8	0.1	0.1	12.7	0.1	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
FtsK_SpoIIIE	PF01580.18	gi|390938058|ref|YP_006401796.1|	-	0.052	12.9	0.0	0.09	12.1	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA	PF00004.29	gi|390938058|ref|YP_006401796.1|	-	0.054	13.9	0.3	0.52	10.7	0.3	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PduV-EutP	PF10662.9	gi|390938058|ref|YP_006401796.1|	-	0.058	13.1	0.5	0.16	11.7	0.2	1.8	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Roc	PF08477.13	gi|390938058|ref|YP_006401796.1|	-	0.058	13.6	0.1	0.098	12.9	0.1	1.4	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_13	PF13166.6	gi|390938058|ref|YP_006401796.1|	-	0.068	11.8	0.1	4.9	5.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|390938058|ref|YP_006401796.1|	-	0.072	13.2	0.2	0.17	11.9	0.0	1.7	2	0	0	2	2	1	0	50S	ribosome-binding	GTPase
ABC_ATPase	PF09818.9	gi|390938058|ref|YP_006401796.1|	-	0.076	11.8	0.3	7.8	5.2	0.0	2.2	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_10	PF12846.7	gi|390938058|ref|YP_006401796.1|	-	0.084	11.8	0.0	0.13	11.2	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
DLIC	PF05783.11	gi|390938058|ref|YP_006401796.1|	-	0.088	11.6	0.0	0.13	11.1	0.0	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
NTPase_1	PF03266.15	gi|390938058|ref|YP_006401796.1|	-	0.093	12.6	1.0	0.24	11.3	0.2	1.9	2	0	0	2	2	2	0	NTPase
CbiA	PF01656.23	gi|390938058|ref|YP_006401796.1|	-	0.095	12.8	0.0	0.16	12.0	0.0	1.5	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Sigma54_activat	PF00158.26	gi|390938058|ref|YP_006401796.1|	-	0.1	12.3	0.1	0.41	10.3	0.0	1.9	2	0	0	2	2	2	0	Sigma-54	interaction	domain
IstB_IS21	PF01695.17	gi|390938058|ref|YP_006401796.1|	-	0.11	12.3	0.2	2.5	7.8	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|390938058|ref|YP_006401796.1|	-	0.17	11.4	0.0	0.27	10.7	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
G-alpha	PF00503.20	gi|390938058|ref|YP_006401796.1|	-	0.18	10.9	0.0	0.28	10.3	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
TsaE	PF02367.17	gi|390938058|ref|YP_006401796.1|	-	0.19	11.7	0.0	0.41	10.7	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ATP-synt_ab	PF00006.25	gi|390938058|ref|YP_006401796.1|	-	0.19	11.4	0.0	0.26	10.9	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
tRNA-synt_2d	PF01409.20	gi|390938059|ref|YP_006401797.1|	-	3.3e-78	262.6	0.0	4.4e-78	262.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.20	gi|390938059|ref|YP_006401797.1|	-	2.6e-06	26.7	1.4	0.0035	16.5	0.1	2.9	3	0	0	3	3	3	2	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_synthFbeta	PF17759.1	gi|390938059|ref|YP_006401797.1|	-	2.2e-05	24.0	0.0	0.0025	17.3	0.0	2.2	2	0	0	2	2	2	2	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
Fer4_14	PF13394.6	gi|390938060|ref|YP_006401798.1|	-	0.0036	17.4	0.0	0.0092	16.1	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|390938060|ref|YP_006401798.1|	-	0.017	15.4	0.0	0.042	14.1	0.0	1.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.21	gi|390938060|ref|YP_006401798.1|	-	0.091	13.1	0.0	0.17	12.2	0.0	1.4	1	0	0	1	1	1	0	Radical	SAM	superfamily
QueT	PF06177.11	gi|390938061|ref|YP_006401799.1|	-	1.5e-29	103.2	17.5	1.7e-29	103.0	17.5	1.0	1	0	0	1	1	1	1	QueT	transporter
ABC_tran	PF00005.27	gi|390938062|ref|YP_006401800.1|	-	3.8e-22	79.3	0.0	5e-22	78.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938062|ref|YP_006401800.1|	-	5.1e-11	42.9	1.8	7.2e-06	26.0	1.2	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390938062|ref|YP_006401800.1|	-	1.3e-09	37.8	0.0	2.4e-08	33.7	0.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|390938062|ref|YP_006401800.1|	-	1.4e-05	25.7	0.0	1.7e-05	25.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|390938062|ref|YP_006401800.1|	-	9.7e-05	22.0	0.1	0.00019	21.1	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|390938062|ref|YP_006401800.1|	-	0.00041	20.2	0.0	0.0006	19.6	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_27	PF13514.6	gi|390938062|ref|YP_006401800.1|	-	0.0048	16.5	0.0	0.0074	15.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.21	gi|390938062|ref|YP_006401800.1|	-	0.0048	16.3	0.0	0.0079	15.6	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
DLIC	PF05783.11	gi|390938062|ref|YP_006401800.1|	-	0.0078	15.1	0.0	0.011	14.6	0.0	1.1	1	0	0	1	1	1	1	Dynein	light	intermediate	chain	(DLIC)
AAA_28	PF13521.6	gi|390938062|ref|YP_006401800.1|	-	0.022	15.0	0.0	0.032	14.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|390938062|ref|YP_006401800.1|	-	0.022	14.7	0.0	0.042	13.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|390938062|ref|YP_006401800.1|	-	0.029	14.3	0.0	0.044	13.7	0.0	1.2	1	0	0	1	1	1	0	RsgA	GTPase
AAA_30	PF13604.6	gi|390938062|ref|YP_006401800.1|	-	0.035	13.8	0.0	0.056	13.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|390938062|ref|YP_006401800.1|	-	0.048	13.8	0.1	0.081	13.1	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|390938062|ref|YP_006401800.1|	-	0.054	13.9	0.0	0.082	13.3	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|390938062|ref|YP_006401800.1|	-	0.1	13.0	0.0	0.25	11.8	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|390938062|ref|YP_006401800.1|	-	0.11	12.5	0.0	0.37	10.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
FtsK_SpoIIIE	PF01580.18	gi|390938062|ref|YP_006401800.1|	-	0.18	11.2	0.1	0.34	10.2	0.1	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_22	PF13401.6	gi|390938062|ref|YP_006401800.1|	-	0.2	11.9	0.3	0.37	11.1	0.3	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|390938062|ref|YP_006401800.1|	-	0.22	10.2	0.0	2.7	6.5	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
DUF4227	PF14004.6	gi|390938063|ref|YP_006401801.1|	-	3.8	7.6	6.5	0.95	9.5	2.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4227)
RHD3	PF05879.12	gi|390938063|ref|YP_006401801.1|	-	8.3	4.4	6.2	11	4.0	6.2	1.1	1	0	0	1	1	1	0	Root	hair	defective	3	GTP-binding	protein	(RHD3)
Adenine_deam_C	PF13382.6	gi|390938064|ref|YP_006401802.1|	-	2.2e-58	196.3	0.1	5.3e-58	195.1	0.0	1.7	2	0	0	2	2	2	1	Adenine	deaminase	C-terminal	domain
Amidohydro_1	PF01979.20	gi|390938064|ref|YP_006401802.1|	-	2e-26	93.2	0.0	5.7e-25	88.4	0.0	2.1	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|390938064|ref|YP_006401802.1|	-	2.7e-09	37.0	0.4	0.00075	19.1	0.0	2.4	2	0	0	2	2	2	2	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|390938065|ref|YP_006401803.1|	-	6e-63	213.2	0.0	7.2e-63	213.0	0.0	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|390938065|ref|YP_006401803.1|	-	2.7e-15	56.8	0.5	3.7e-11	43.2	0.1	2.1	2	0	0	2	2	2	2	Amidohydrolase	family
Aminotran_5	PF00266.19	gi|390938067|ref|YP_006401805.1|	-	1.9e-141	471.3	0.0	2.2e-141	471.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|390938067|ref|YP_006401805.1|	-	2.9e-08	33.4	0.0	4.4e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|390938067|ref|YP_006401805.1|	-	5.8e-06	25.1	0.0	5.1e-05	22.0	0.0	2.2	3	0	0	3	3	3	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|390938067|ref|YP_006401805.1|	-	0.0067	15.8	0.0	0.008	15.5	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
SelA	PF03841.13	gi|390938067|ref|YP_006401805.1|	-	0.012	14.7	0.0	0.018	14.0	0.0	1.2	1	0	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
tRNA-synt_2	PF00152.20	gi|390938068|ref|YP_006401806.1|	-	6.4e-43	147.0	0.0	8.2e-43	146.7	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
HD	PF01966.22	gi|390938069|ref|YP_006401807.1|	-	0.018	15.2	0.1	0.037	14.2	0.1	1.5	1	0	0	1	1	1	0	HD	domain
PA14	PF07691.12	gi|390938070|ref|YP_006401808.1|	-	4.5e-13	49.2	0.0	6.2e-13	48.8	0.0	1.2	1	0	0	1	1	1	1	PA14	domain
GLEYA	PF10528.9	gi|390938070|ref|YP_006401808.1|	-	0.07	13.6	0.0	0.14	12.6	0.0	1.5	1	0	0	1	1	1	0	GLEYA	domain
Mem_trans	PF03547.18	gi|390938071|ref|YP_006401809.1|	-	5.1e-12	44.9	25.1	2.2e-06	26.3	6.4	2.3	1	1	1	2	2	2	2	Membrane	transport	protein
Trypsin_2	PF13365.6	gi|390938072|ref|YP_006401810.1|	-	7.3e-29	101.6	0.5	1.2e-28	101.0	0.5	1.3	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.26	gi|390938072|ref|YP_006401810.1|	-	2.3e-16	60.3	0.0	4.5e-16	59.3	0.0	1.4	1	1	0	1	1	1	1	Trypsin
PDZ_2	PF13180.6	gi|390938072|ref|YP_006401810.1|	-	2e-12	47.2	0.0	5.3e-12	45.9	0.0	1.7	1	0	0	1	1	1	1	PDZ	domain
PDZ_6	PF17820.1	gi|390938072|ref|YP_006401810.1|	-	1.2e-11	44.3	0.2	4.1e-11	42.6	0.1	2.0	2	0	0	2	2	2	1	PDZ	domain
PDZ	PF00595.24	gi|390938072|ref|YP_006401810.1|	-	3.5e-08	33.7	0.0	9.1e-08	32.3	0.0	1.9	1	0	0	1	1	1	1	PDZ	domain
Peptidase_S46	PF10459.9	gi|390938072|ref|YP_006401810.1|	-	0.00041	19.1	1.0	0.49	9.0	0.3	2.1	2	0	0	2	2	2	2	Peptidase	S46
Tricorn_PDZ	PF14685.6	gi|390938072|ref|YP_006401810.1|	-	0.013	15.4	0.2	0.053	13.5	0.0	2.1	2	0	0	2	2	2	0	Tricorn	protease	PDZ	domain
DUF1838	PF08894.11	gi|390938072|ref|YP_006401810.1|	-	0.19	11.4	0.0	0.28	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1838)
HTH_23	PF13384.6	gi|390938073|ref|YP_006401811.1|	-	0.00011	21.8	0.1	0.00049	19.8	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_7	PF02796.15	gi|390938073|ref|YP_006401811.1|	-	0.00028	20.9	0.1	0.00059	19.9	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_3	PF01381.22	gi|390938073|ref|YP_006401811.1|	-	0.042	13.9	0.1	0.1	12.7	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix
HTH_38	PF13936.6	gi|390938073|ref|YP_006401811.1|	-	0.064	13.0	1.6	0.07	12.9	0.3	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
UPF0175	PF03683.13	gi|390938073|ref|YP_006401811.1|	-	0.15	11.8	0.1	1.5	8.6	0.0	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0175)
DUF438	PF04282.13	gi|390938074|ref|YP_006401812.1|	-	1.5e-22	79.3	0.8	1.5e-22	79.3	0.8	2.6	3	0	0	3	3	3	1	Family	of	unknown	function	(DUF438)
PAS_10	PF13596.6	gi|390938074|ref|YP_006401812.1|	-	7.9e-17	61.8	0.1	4.4e-16	59.4	0.0	2.2	3	0	0	3	3	3	1	PAS	domain
Hemerythrin	PF01814.23	gi|390938074|ref|YP_006401812.1|	-	5.6e-10	39.9	0.0	1.2e-09	38.9	0.0	1.6	1	0	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
PAS_4	PF08448.10	gi|390938074|ref|YP_006401812.1|	-	0.00093	19.4	0.0	0.0018	18.5	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
dCache_1	PF02743.18	gi|390938074|ref|YP_006401812.1|	-	0.017	15.0	0.0	0.7	9.6	0.0	2.7	3	0	0	3	3	3	0	Cache	domain
TyeA	PF09059.10	gi|390938074|ref|YP_006401812.1|	-	0.026	14.6	0.0	0.12	12.4	0.0	2.2	2	0	0	2	2	2	0	TyeA
TAFH	PF07531.14	gi|390938074|ref|YP_006401812.1|	-	0.059	13.5	0.7	2.4	8.3	0.4	2.9	3	0	0	3	3	3	0	NHR1	homology	to	TAF
HeLo	PF14479.6	gi|390938074|ref|YP_006401812.1|	-	0.063	13.1	3.7	0.093	12.6	0.1	2.5	3	0	0	3	3	3	0	Prion-inhibition	and	propagation
HTH_AsnC-type	PF13404.6	gi|390938075|ref|YP_006401813.1|	-	3.3e-13	49.2	0.1	5.1e-13	48.6	0.1	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
AsnC_trans_reg	PF01037.21	gi|390938075|ref|YP_006401813.1|	-	1.1e-09	38.1	0.0	2.1e-09	37.2	0.0	1.5	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|390938075|ref|YP_006401813.1|	-	5e-09	35.6	0.7	1e-08	34.6	0.1	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|390938075|ref|YP_006401813.1|	-	4.2e-05	23.4	0.1	0.00048	20.0	0.0	2.5	3	1	0	3	3	3	1	MarR	family
HTH_27	PF13463.6	gi|390938075|ref|YP_006401813.1|	-	0.00026	21.4	0.3	0.00094	19.6	0.1	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
NapD	PF03927.13	gi|390938075|ref|YP_006401813.1|	-	0.0004	20.4	0.0	0.0007	19.6	0.0	1.3	1	0	0	1	1	1	1	NapD	protein
MarR_2	PF12802.7	gi|390938075|ref|YP_006401813.1|	-	0.0017	18.2	0.0	0.0066	16.3	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HxlR	PF01638.17	gi|390938075|ref|YP_006401813.1|	-	0.0021	17.9	0.1	0.0039	17.0	0.1	1.5	2	0	0	2	2	2	1	HxlR-like	helix-turn-helix
HTH_11	PF08279.12	gi|390938075|ref|YP_006401813.1|	-	0.0022	17.9	0.0	0.0039	17.1	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_34	PF13601.6	gi|390938075|ref|YP_006401813.1|	-	0.0062	16.7	0.1	0.045	13.9	0.0	2.1	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|390938075|ref|YP_006401813.1|	-	0.016	15.1	0.5	0.091	12.7	0.1	2.0	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
AsnC_trans_reg2	PF17805.1	gi|390938075|ref|YP_006401813.1|	-	0.03	14.5	0.0	0.22	11.7	0.0	1.9	2	0	0	2	2	2	0	AsnC-like	ligand	binding	domain
HTH_50	PF18024.1	gi|390938075|ref|YP_006401813.1|	-	0.058	13.0	0.0	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|390938075|ref|YP_006401813.1|	-	0.072	13.3	0.1	21	5.4	0.0	2.5	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|390938075|ref|YP_006401813.1|	-	0.11	12.8	0.1	2.2	8.7	0.0	2.2	2	0	0	2	2	2	0	Transcriptional	regulator
LexA_DNA_bind	PF01726.16	gi|390938075|ref|YP_006401813.1|	-	0.13	12.1	0.1	0.29	10.9	0.1	1.6	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Desulfoferrodox	PF01880.18	gi|390938077|ref|YP_006401815.1|	-	1.1e-30	106.1	0.0	1.3e-30	105.8	0.0	1.0	1	0	0	1	1	1	1	Desulfoferrodoxin
SoxY	PF13501.6	gi|390938077|ref|YP_006401815.1|	-	4.9e-10	39.6	0.0	6.2e-10	39.3	0.0	1.1	1	0	0	1	1	1	1	Sulfur	oxidation	protein	SoxY
RS4NT	PF08071.12	gi|390938077|ref|YP_006401815.1|	-	0.15	12.2	0.1	0.27	11.4	0.1	1.4	1	0	0	1	1	1	0	RS4NT	(NUC023)	domain
GCHY-1	PF02649.14	gi|390938079|ref|YP_006401817.1|	-	4.6e-31	108.3	0.0	5.7e-31	108.0	0.0	1.0	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
MAF_flag10	PF01973.18	gi|390938080|ref|YP_006401818.1|	-	4.9e-25	88.2	0.0	6.6e-25	87.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
CST-I	PF06002.12	gi|390938080|ref|YP_006401818.1|	-	0.13	12.0	0.0	0.19	11.5	0.0	1.2	1	0	0	1	1	1	0	Alpha-2,3-sialyltransferase	(CST-I)
DHNA	PF04038.12	gi|390938081|ref|YP_006401819.1|	-	1.4e-34	118.8	0.0	1.7e-34	118.6	0.0	1.0	1	0	0	1	1	1	1	Dihydroneopterin	aldolase
Flavoprotein	PF02441.19	gi|390938082|ref|YP_006401820.1|	-	7.7e-18	64.7	0.0	1.3e-17	64.0	0.0	1.3	1	0	0	1	1	1	1	Flavoprotein
Fer4_6	PF12837.7	gi|390938082|ref|YP_006401820.1|	-	1e-08	34.9	13.4	3.8e-05	23.6	2.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|390938082|ref|YP_006401820.1|	-	6e-07	30.3	6.7	0.00066	20.6	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4	PF00037.27	gi|390938082|ref|YP_006401820.1|	-	7.4e-07	28.7	14.0	0.0007	19.3	2.3	3.2	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|390938082|ref|YP_006401820.1|	-	1.8e-06	28.0	8.5	2.8e-06	27.4	8.5	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|390938082|ref|YP_006401820.1|	-	1.5e-05	24.8	12.5	0.0025	17.8	2.1	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390938082|ref|YP_006401820.1|	-	1.6e-05	25.4	11.7	0.00059	20.4	13.6	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|390938082|ref|YP_006401820.1|	-	3.5e-05	23.9	11.1	5.7e-05	23.2	11.1	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|390938082|ref|YP_006401820.1|	-	9.1e-05	22.5	13.3	0.00022	21.3	13.6	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|390938082|ref|YP_006401820.1|	-	0.14	13.2	11.7	0.45	11.6	2.1	3.0	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Ribosomal_L31	PF01197.18	gi|390938082|ref|YP_006401820.1|	-	0.14	12.4	0.0	0.27	11.5	0.0	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L31
Fer4_17	PF13534.6	gi|390938082|ref|YP_006401820.1|	-	0.57	10.8	12.4	1.2	9.7	2.9	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|390938082|ref|YP_006401820.1|	-	1.4	9.7	11.2	12	6.7	3.8	3.1	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.6	gi|390938082|ref|YP_006401820.1|	-	6.6	7.3	14.7	1.9	9.0	3.2	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
DUF4346	PF14251.6	gi|390938083|ref|YP_006401821.1|	-	1e-08	35.2	0.1	0.0038	17.3	0.1	2.8	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4346)
CdhD	PF03599.16	gi|390938083|ref|YP_006401821.1|	-	0.0091	14.8	0.1	0.016	13.9	0.1	1.3	1	0	0	1	1	1	1	CO	dehydrogenase/acetyl-CoA	synthase	delta	subunit
MobB	PF03205.14	gi|390938083|ref|YP_006401821.1|	-	0.012	15.6	0.1	0.06	13.3	0.0	2.1	2	1	1	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Pterin_bind	PF00809.22	gi|390938083|ref|YP_006401821.1|	-	0.1	12.3	0.5	0.24	11.0	0.5	1.7	1	1	0	1	1	1	0	Pterin	binding	enzyme
AIRS_C	PF02769.22	gi|390938084|ref|YP_006401822.1|	-	1.2e-22	80.7	0.0	1.7e-22	80.2	0.0	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|390938084|ref|YP_006401822.1|	-	2.6e-14	53.6	0.4	6.2e-14	52.4	0.4	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
HupF_HypC	PF01455.18	gi|390938085|ref|YP_006401823.1|	-	2.6e-22	78.7	0.3	3e-22	78.5	0.3	1.0	1	0	0	1	1	1	1	HupF/HypC	family
Hexapep	PF00132.24	gi|390938085|ref|YP_006401823.1|	-	0.036	13.8	1.3	0.09	12.5	1.3	1.8	1	1	0	1	1	1	0	Bacterial	transferase	hexapeptide	(six	repeats)
Sua5_yciO_yrdC	PF01300.18	gi|390938086|ref|YP_006401824.1|	-	1.2e-43	148.6	0.0	1.8e-43	148.1	0.0	1.2	1	0	0	1	1	1	1	Telomere	recombination
zf-HYPF	PF07503.12	gi|390938086|ref|YP_006401824.1|	-	3.7e-30	103.4	10.3	9.1e-15	54.1	1.9	2.4	2	0	0	2	2	2	2	HypF	finger
HypF_C	PF17788.1	gi|390938086|ref|YP_006401824.1|	-	5.6e-22	78.4	0.0	1.1e-21	77.5	0.0	1.5	1	0	0	1	1	1	1	HypF	Kae1-like	domain
Acylphosphatase	PF00708.18	gi|390938086|ref|YP_006401824.1|	-	3.1e-18	66.0	0.2	7e-18	64.8	0.0	1.7	2	0	0	2	2	2	1	Acylphosphatase
FGGY_C	PF02782.16	gi|390938086|ref|YP_006401824.1|	-	0.011	15.5	0.0	0.018	14.8	0.0	1.3	1	0	0	1	1	1	0	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
Peptidase_M22	PF00814.25	gi|390938086|ref|YP_006401824.1|	-	0.24	11.1	0.0	0.69	9.6	0.0	1.7	2	0	0	2	2	2	0	Glycoprotease	family
Oxidored_q6	PF01058.22	gi|390938087|ref|YP_006401825.1|	-	1e-28	99.8	0.5	1.3e-28	99.5	0.5	1.1	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
NepR	PF18557.1	gi|390938087|ref|YP_006401825.1|	-	0.14	11.8	0.6	5.9	6.6	0.3	2.3	2	0	0	2	2	2	0	Anti-sigma	factor	NepR
Complex1_30kDa	PF00329.19	gi|390938088|ref|YP_006401826.1|	-	9.4e-18	65.0	0.0	1.1e-17	64.8	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Complex1_49kDa	PF00346.19	gi|390938089|ref|YP_006401827.1|	-	5.3e-66	222.5	1.0	1.7e-63	214.2	1.0	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|390938089|ref|YP_006401827.1|	-	1.2e-12	47.5	5.4	1.2e-10	41.0	0.4	3.4	4	0	0	4	4	4	2	Nickel-dependent	hydrogenase
Fer4	PF00037.27	gi|390938090|ref|YP_006401828.1|	-	3.6e-14	51.9	12.0	1.8e-07	30.7	3.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390938090|ref|YP_006401828.1|	-	5.6e-11	42.9	7.2	8.9e-11	42.2	7.2	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|390938090|ref|YP_006401828.1|	-	6.7e-10	39.0	4.7	3.7e-05	23.7	0.6	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|390938090|ref|YP_006401828.1|	-	6.9e-10	38.9	18.3	9.1e-07	28.9	10.6	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|390938090|ref|YP_006401828.1|	-	2e-09	37.1	12.1	2.7e-05	24.0	2.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|390938090|ref|YP_006401828.1|	-	2.8e-09	37.0	27.4	4e-06	26.9	9.7	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|390938090|ref|YP_006401828.1|	-	1.2e-07	32.5	6.7	0.0011	19.9	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|390938090|ref|YP_006401828.1|	-	2.5e-07	30.4	10.5	0.0018	18.2	2.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|390938090|ref|YP_006401828.1|	-	1.1e-06	29.0	2.8	0.013	15.9	0.1	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|390938090|ref|YP_006401828.1|	-	1.7e-06	28.5	4.9	0.0075	16.8	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|390938090|ref|YP_006401828.1|	-	0.0011	19.1	2.4	0.13	12.4	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|390938090|ref|YP_006401828.1|	-	0.0022	18.8	14.8	0.068	14.1	3.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|390938090|ref|YP_006401828.1|	-	0.0023	18.7	4.0	0.38	11.6	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|390938090|ref|YP_006401828.1|	-	0.031	14.8	10.9	0.86	10.3	2.3	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|390938090|ref|YP_006401828.1|	-	0.25	12.1	7.8	3.2	8.5	0.1	2.7	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|390938090|ref|YP_006401828.1|	-	0.94	10.1	8.4	8.3	7.0	0.5	2.4	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
MrpF_PhaF	PF04066.13	gi|390938091|ref|YP_006401829.1|	-	6.2e-11	42.5	6.2	6.2e-11	42.5	6.2	1.8	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
MgtE	PF01769.16	gi|390938091|ref|YP_006401829.1|	-	0.23	11.8	10.3	0.28	11.5	10.3	1.1	1	0	0	1	1	1	0	Divalent	cation	transporter
PhaG_MnhG_YufB	PF03334.14	gi|390938092|ref|YP_006401830.1|	-	1.6e-15	57.1	11.6	2e-15	56.7	11.6	1.1	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
SpoIIIAC	PF06686.11	gi|390938092|ref|YP_006401830.1|	-	0.64	10.2	0.2	0.64	10.2	0.2	3.2	3	1	0	3	3	3	0	Stage	III	sporulation	protein	AC/AD	protein	family
TPPK_C	PF12555.8	gi|390938092|ref|YP_006401830.1|	-	2.9	8.0	7.7	1.9	8.6	0.8	2.6	2	1	0	2	2	2	0	Thiamine	pyrophosphokinase	C	terminal
DUF4040	PF13244.6	gi|390938093|ref|YP_006401831.1|	-	1.7e-12	47.3	3.8	1.7e-12	47.3	3.8	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4040)
DUF2070	PF09843.9	gi|390938093|ref|YP_006401831.1|	-	0.0018	16.7	6.1	0.0019	16.6	6.1	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
DUF5438	PF17506.2	gi|390938093|ref|YP_006401831.1|	-	0.016	15.5	1.1	0.016	15.5	1.1	2.0	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5438)
CreD	PF06123.12	gi|390938093|ref|YP_006401831.1|	-	1	8.1	6.5	1.1	8.0	6.5	1.0	1	0	0	1	1	1	0	Inner	membrane	protein	CreD
MnhB	PF04039.13	gi|390938094|ref|YP_006401832.1|	-	6.2e-21	75.0	15.7	6.2e-21	75.0	15.7	1.9	2	0	0	2	2	2	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF4337	PF14235.6	gi|390938094|ref|YP_006401832.1|	-	2	8.5	3.9	4.6	7.3	3.9	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
Oxidored_q2	PF00420.24	gi|390938095|ref|YP_006401833.1|	-	9.5e-22	76.6	0.2	1.3e-21	76.2	0.2	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF2070	PF09843.9	gi|390938095|ref|YP_006401833.1|	-	0.082	11.2	5.6	0.1	10.9	5.6	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF2583	PF10762.9	gi|390938095|ref|YP_006401833.1|	-	0.3	11.5	2.6	17	5.9	0.1	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2583)
MNHE	PF01899.16	gi|390938096|ref|YP_006401834.1|	-	3.6e-41	140.3	0.4	4.2e-41	140.1	0.4	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
Proton_antipo_M	PF00361.20	gi|390938097|ref|YP_006401835.1|	-	2.5e-52	177.9	26.7	2.5e-52	177.9	26.7	2.0	3	0	0	3	3	3	1	Proton-conducting	membrane	transporter
NADHdeh_related	PF10125.9	gi|390938097|ref|YP_006401835.1|	-	2.1e-06	27.3	8.0	2.1e-06	27.3	8.0	2.7	2	0	0	2	2	2	1	NADH	dehydrogenase	I,	subunit	N	related	protein
DUF3493	PF11998.8	gi|390938097|ref|YP_006401835.1|	-	0.35	11.1	14.5	1.7	8.9	0.0	5.4	5	0	0	5	5	5	0	Low	psii	accumulation1	/	Rep27
TraA	PF05513.11	gi|390938097|ref|YP_006401835.1|	-	1.3	9.4	8.0	0.13	12.7	0.8	2.9	3	0	0	3	3	3	0	TraA
FixQ	PF05545.11	gi|390938098|ref|YP_006401836.1|	-	2.3	8.3	6.2	12	5.9	0.1	2.3	2	0	0	2	2	2	0	Cbb3-type	cytochrome	oxidase	component	FixQ
NADHdh	PF00146.21	gi|390938099|ref|YP_006401837.1|	-	1.4e-48	165.7	19.8	1.9e-48	165.3	19.8	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Glyco_hydro_53	PF07745.13	gi|390938100|ref|YP_006401838.1|	-	7.2e-118	393.4	0.1	9.8e-118	393.0	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	53
Glucodextran_C	PF09985.9	gi|390938100|ref|YP_006401838.1|	-	2.9e-52	177.4	0.6	3.6e-51	173.8	0.0	2.2	2	0	0	2	2	2	1	C-terminal	binding-module,	SLH-like,	of	glucodextranase
Cellulase	PF00150.18	gi|390938100|ref|YP_006401838.1|	-	2.8e-10	40.1	0.3	4.6e-10	39.4	0.3	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
Big_4	PF07532.11	gi|390938100|ref|YP_006401838.1|	-	1e-09	38.0	1.0	3.3e-09	36.3	1.0	1.8	1	0	0	1	1	1	1	Bacterial	Ig-like	domain	(group	4)
Glyco_hydro_cc	PF11790.8	gi|390938100|ref|YP_006401838.1|	-	8.3e-05	22.3	0.2	0.00018	21.2	0.2	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolase	catalytic	core
Na_Ca_ex	PF01699.24	gi|390938100|ref|YP_006401838.1|	-	0.012	15.6	1.6	0.014	15.3	0.1	1.8	2	0	0	2	2	2	0	Sodium/calcium	exchanger	protein
SBP_bac_8	PF13416.6	gi|390938101|ref|YP_006401839.1|	-	3.6e-28	99.2	0.3	3.6e-28	99.2	0.3	2.1	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|390938101|ref|YP_006401839.1|	-	9.6e-24	84.9	6.0	9.6e-24	84.9	6.0	1.7	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
T3SS_needle_reg	PF09025.10	gi|390938101|ref|YP_006401839.1|	-	0.0093	15.9	0.0	0.72	9.8	0.2	2.5	3	0	0	3	3	3	1	YopR,	type	III	needle-polymerisation	regulator
DUF2749	PF10907.8	gi|390938101|ref|YP_006401839.1|	-	0.041	14.1	1.7	0.31	11.2	3.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2749)
Pilin_N	PF07790.11	gi|390938101|ref|YP_006401839.1|	-	0.74	10.8	5.8	2	9.4	5.8	1.7	1	0	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
Shisa	PF13908.6	gi|390938101|ref|YP_006401839.1|	-	1.8	8.8	7.2	2.6	8.2	7.2	1.2	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
Mucin	PF01456.17	gi|390938101|ref|YP_006401839.1|	-	5.1	7.1	37.2	8.5	6.4	36.2	1.7	2	0	0	2	2	2	0	Mucin-like	glycoprotein
FSA_C	PF10479.9	gi|390938101|ref|YP_006401839.1|	-	8.8	4.3	11.6	12	3.9	11.6	1.1	1	0	0	1	1	1	0	Fragile	site-associated	protein	C-terminus
BPD_transp_1	PF00528.22	gi|390938102|ref|YP_006401840.1|	-	2e-15	57.0	12.3	2e-15	57.0	12.3	2.2	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Sec7_N	PF12783.7	gi|390938102|ref|YP_006401840.1|	-	0.069	13.0	0.0	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	Guanine	nucleotide	exchange	factor	in	Golgi	transport	N-terminal
BPD_transp_1	PF00528.22	gi|390938103|ref|YP_006401841.1|	-	6e-13	48.9	15.0	6e-13	48.9	15.0	2.7	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF389	PF04087.14	gi|390938103|ref|YP_006401841.1|	-	1.5	8.8	9.9	1.7e+02	2.2	9.9	2.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF389)
Glyco_hydro_35	PF01301.19	gi|390938104|ref|YP_006401842.1|	-	2e-61	208.4	2.1	3.7e-61	207.5	0.3	2.2	3	0	0	3	3	3	1	Glycosyl	hydrolases	family	35
Glyco_hydro_42	PF02449.15	gi|390938104|ref|YP_006401842.1|	-	2.5e-08	33.6	0.9	5.9e-07	29.2	0.9	2.4	1	1	0	1	1	1	1	Beta-galactosidase
BetaGal_dom2	PF10435.9	gi|390938104|ref|YP_006401842.1|	-	1e-05	25.4	0.0	1.8e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	Beta-galactosidase,	domain	2
BetaGal_dom4_5	PF13364.6	gi|390938104|ref|YP_006401842.1|	-	0.00014	22.4	0.0	0.2	12.2	0.0	3.2	3	0	0	3	3	3	2	Beta-galactosidase	jelly	roll	domain
DUF5353	PF17304.2	gi|390938105|ref|YP_006401843.1|	-	0.023	14.5	0.3	0.053	13.3	0.3	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5353)
DUF3318	PF11780.8	gi|390938105|ref|YP_006401843.1|	-	0.1	12.5	0.3	0.12	12.3	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3318)
PspB	PF06667.12	gi|390938105|ref|YP_006401843.1|	-	0.28	11.3	1.1	0.48	10.5	1.1	1.3	1	0	0	1	1	1	0	Phage	shock	protein	B
Wzy_C	PF04932.15	gi|390938105|ref|YP_006401843.1|	-	0.29	10.8	8.3	0.46	10.1	8.3	1.3	1	1	0	1	1	1	0	O-Antigen	ligase
COX14	PF14880.6	gi|390938106|ref|YP_006401844.1|	-	0.16	11.8	4.5	0.25	11.2	0.0	2.5	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
SBP_bac_5	PF00496.22	gi|390938107|ref|YP_006401845.1|	-	6.7e-13	48.4	6.3	3e-10	39.6	0.1	2.3	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
DUF4064	PF13273.6	gi|390938107|ref|YP_006401845.1|	-	0.014	15.7	1.7	0.076	13.3	1.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
ArsB	PF02040.15	gi|390938107|ref|YP_006401845.1|	-	0.028	13.8	2.1	0.054	12.8	2.1	1.4	1	0	0	1	1	1	0	Arsenical	pump	membrane	protein
HTH_psq	PF05225.16	gi|390938107|ref|YP_006401845.1|	-	0.16	11.8	0.2	0.95	9.3	0.0	2.3	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
NPV_P10	PF05531.12	gi|390938107|ref|YP_006401845.1|	-	0.18	12.3	6.3	0.099	13.1	1.4	2.8	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Apolipoprotein	PF01442.18	gi|390938107|ref|YP_006401845.1|	-	0.21	11.4	1.6	0.41	10.5	1.6	1.4	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
LPP	PF04728.13	gi|390938107|ref|YP_006401845.1|	-	0.61	10.5	2.6	1.8	9.0	2.6	1.8	1	0	0	1	1	1	0	Lipoprotein	leucine-zipper
DUF1664	PF07889.12	gi|390938107|ref|YP_006401845.1|	-	0.67	10.0	5.4	7.7	6.6	5.4	2.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Prominin	PF05478.11	gi|390938107|ref|YP_006401845.1|	-	1.1	7.1	7.9	1.7	6.5	7.9	1.2	1	0	0	1	1	1	0	Prominin
DUF4618	PF15397.6	gi|390938107|ref|YP_006401845.1|	-	8.7	5.7	9.0	1.3	8.4	0.5	3.1	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4618)
BPD_transp_1	PF00528.22	gi|390938108|ref|YP_006401846.1|	-	3e-29	102.1	16.2	3e-29	102.1	16.2	2.7	2	1	1	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|390938109|ref|YP_006401847.1|	-	2.8e-25	89.1	17.1	2.8e-25	89.1	17.1	2.1	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Radical_SAM	PF04055.21	gi|390938110|ref|YP_006401848.1|	-	1.3e-21	77.7	0.0	2.4e-21	76.8	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
ABC_tran	PF00005.27	gi|390938111|ref|YP_006401849.1|	-	4.9e-31	108.1	0.0	6.4e-31	107.7	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|390938111|ref|YP_006401849.1|	-	1.4e-18	67.2	0.0	2.3e-18	66.4	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|390938111|ref|YP_006401849.1|	-	2e-06	27.8	0.5	2e-05	24.6	0.1	2.0	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390938111|ref|YP_006401849.1|	-	1e-05	25.1	0.9	0.00018	21.1	0.2	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.6	gi|390938111|ref|YP_006401849.1|	-	0.00067	19.3	0.0	0.011	15.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
TniB	PF05621.11	gi|390938111|ref|YP_006401849.1|	-	0.0013	18.2	0.3	0.043	13.2	0.1	2.2	2	0	0	2	2	2	1	Bacterial	TniB	protein
ATP-synt_ab	PF00006.25	gi|390938111|ref|YP_006401849.1|	-	0.0095	15.6	0.1	0.013	15.1	0.1	1.4	1	1	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_22	PF13401.6	gi|390938111|ref|YP_006401849.1|	-	0.014	15.7	0.5	0.23	11.7	0.5	2.1	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|390938111|ref|YP_006401849.1|	-	0.016	15.7	0.2	0.1	13.1	0.2	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|390938111|ref|YP_006401849.1|	-	0.017	14.8	0.0	0.044	13.5	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DnaB_C	PF03796.15	gi|390938111|ref|YP_006401849.1|	-	0.018	14.3	0.1	4	6.7	0.0	2.1	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
RsgA_GTPase	PF03193.16	gi|390938111|ref|YP_006401849.1|	-	0.019	14.9	0.0	0.053	13.4	0.0	1.6	2	0	0	2	2	2	0	RsgA	GTPase
RNA_helicase	PF00910.22	gi|390938111|ref|YP_006401849.1|	-	0.037	14.4	0.1	0.074	13.4	0.1	1.5	1	0	0	1	1	1	0	RNA	helicase
AAA_16	PF13191.6	gi|390938111|ref|YP_006401849.1|	-	0.088	13.2	0.1	0.2	12.0	0.1	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|390938111|ref|YP_006401849.1|	-	0.099	12.0	0.0	0.92	8.8	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
PRK	PF00485.18	gi|390938111|ref|YP_006401849.1|	-	0.17	11.6	0.0	0.24	11.1	0.0	1.2	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
ATPase	PF06745.13	gi|390938111|ref|YP_006401849.1|	-	0.18	11.1	0.2	1.2	8.5	0.0	2.1	2	0	0	2	2	2	0	KaiC
NACHT	PF05729.12	gi|390938111|ref|YP_006401849.1|	-	0.2	11.5	0.1	0.39	10.6	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.6	gi|390938111|ref|YP_006401849.1|	-	0.24	11.1	0.6	0.6	9.8	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|390938112|ref|YP_006401850.1|	-	1.1e-29	103.7	0.0	1.5e-29	103.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|390938112|ref|YP_006401850.1|	-	2.8e-18	66.2	0.1	5.3e-18	65.3	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|390938112|ref|YP_006401850.1|	-	0.00046	20.1	0.3	0.075	12.8	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|390938112|ref|YP_006401850.1|	-	0.0061	16.8	0.4	0.013	15.8	0.4	1.8	1	1	0	1	1	1	1	AAA	domain
ATPase	PF06745.13	gi|390938112|ref|YP_006401850.1|	-	0.011	15.1	0.2	0.8	9.0	0.0	2.2	2	0	0	2	2	2	0	KaiC
G-alpha	PF00503.20	gi|390938112|ref|YP_006401850.1|	-	0.08	12.1	0.3	1.1	8.4	0.2	1.9	1	1	1	2	2	2	0	G-protein	alpha	subunit
AAA_16	PF13191.6	gi|390938112|ref|YP_006401850.1|	-	0.082	13.3	0.1	0.19	12.1	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|390938112|ref|YP_006401850.1|	-	0.15	11.8	0.2	0.27	11.0	0.2	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ACP_syn_III_C	PF08541.10	gi|390938113|ref|YP_006401851.1|	-	1.6e-12	47.4	0.0	9.7e-12	44.9	0.0	2.2	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
Thiolase_N	PF00108.23	gi|390938113|ref|YP_006401851.1|	-	0.00016	21.1	0.1	0.0004	19.8	0.2	1.5	2	0	0	2	2	2	1	Thiolase,	N-terminal	domain
HMG_CoA_synt_C	PF08540.10	gi|390938113|ref|YP_006401851.1|	-	0.00053	19.7	0.1	0.017	14.8	0.0	2.2	1	1	1	2	2	2	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
ACP_syn_III	PF08545.10	gi|390938113|ref|YP_006401851.1|	-	0.0018	18.1	0.5	0.0067	16.2	0.2	2.0	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
DUF35_N	PF12172.8	gi|390938114|ref|YP_006401852.1|	-	1.6e-10	40.6	1.9	2.2e-10	40.2	1.9	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|390938114|ref|YP_006401852.1|	-	1e-08	35.1	0.0	1.4e-08	34.6	0.0	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
Methyltransf_13	PF08421.11	gi|390938114|ref|YP_006401852.1|	-	0.02	15.1	0.3	10	6.4	0.0	2.5	3	0	0	3	3	3	0	Putative	zinc	binding	domain
Radical_SAM	PF04055.21	gi|390938116|ref|YP_006401854.1|	-	5.3e-10	39.9	0.0	2.2e-09	37.9	0.0	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|390938116|ref|YP_006401854.1|	-	0.043	13.9	0.0	0.28	11.2	0.0	2.1	2	0	0	2	2	2	0	B12	binding	domain
Aminotran_1_2	PF00155.21	gi|390938117|ref|YP_006401855.1|	-	6e-35	121.1	0.0	6.7e-35	120.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.7	gi|390938117|ref|YP_006401855.1|	-	1.5e-07	30.6	0.0	2.4e-07	29.9	0.0	1.2	1	0	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
Beta_elim_lyase	PF01212.21	gi|390938117|ref|YP_006401855.1|	-	0.0034	16.7	0.0	0.0049	16.2	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|390938117|ref|YP_006401855.1|	-	0.01	15.2	0.0	0.023	14.0	0.0	1.6	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
HTH_3	PF01381.22	gi|390938119|ref|YP_006401857.1|	-	7.8e-05	22.7	0.8	0.00012	22.0	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix
HTH_Tnp_ISL3	PF13542.6	gi|390938119|ref|YP_006401857.1|	-	0.00013	21.3	0.0	0.00021	20.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_28	PF13518.6	gi|390938119|ref|YP_006401857.1|	-	0.00035	20.7	0.2	0.00059	19.9	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
NUMOD1	PF07453.13	gi|390938119|ref|YP_006401857.1|	-	0.0051	17.0	1.3	0.68	10.3	0.0	3.0	3	0	0	3	3	3	1	NUMOD1	domain
HTH_Tnp_Tc3_1	PF11427.8	gi|390938119|ref|YP_006401857.1|	-	0.006	16.4	0.4	0.2	11.5	0.1	2.3	2	0	0	2	2	2	1	Tc3	transposase
Glyco_hydro_77	PF02446.17	gi|390938119|ref|YP_006401857.1|	-	0.0071	15.3	0.0	0.0083	15.0	0.0	1.0	1	0	0	1	1	1	1	4-alpha-glucanotransferase
HTH_24	PF13412.6	gi|390938119|ref|YP_006401857.1|	-	0.0081	15.7	0.1	0.017	14.7	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|390938119|ref|YP_006401857.1|	-	0.0095	15.7	0.3	0.018	14.8	0.3	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_10	PF04967.12	gi|390938119|ref|YP_006401857.1|	-	0.015	15.1	0.2	0.16	11.8	0.0	2.5	3	0	0	3	3	3	0	HTH	DNA	binding	domain
HTH_19	PF12844.7	gi|390938119|ref|YP_006401857.1|	-	0.02	14.9	0.0	0.044	13.8	0.0	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|390938119|ref|YP_006401857.1|	-	0.031	14.2	0.3	0.059	13.3	0.3	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_29	PF13551.6	gi|390938119|ref|YP_006401857.1|	-	0.032	14.2	0.1	0.058	13.4	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
MerR	PF00376.23	gi|390938119|ref|YP_006401857.1|	-	0.034	13.9	0.1	0.066	13.0	0.1	1.5	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_31	PF13560.6	gi|390938119|ref|YP_006401857.1|	-	0.036	14.4	0.1	0.3	11.5	0.0	2.0	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|390938119|ref|YP_006401857.1|	-	0.041	13.7	0.1	0.098	12.5	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_IS630	PF01710.16	gi|390938119|ref|YP_006401857.1|	-	0.061	13.4	0.0	0.087	12.9	0.0	1.3	1	1	0	1	1	1	0	Transposase
HTH_26	PF13443.6	gi|390938119|ref|YP_006401857.1|	-	0.071	13.6	0.0	0.13	12.7	0.0	1.4	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_Tnp_1	PF01527.20	gi|390938119|ref|YP_006401857.1|	-	0.082	13.2	0.0	0.18	12.1	0.0	1.5	1	1	0	1	1	1	0	Transposase
Taeniidae_ag	PF05596.11	gi|390938119|ref|YP_006401857.1|	-	0.082	12.9	0.1	0.47	10.5	0.1	2.0	2	0	0	2	2	2	0	Taeniidae	antigen
DUF2192	PF09958.9	gi|390938122|ref|YP_006401860.1|	-	3.2e-88	295.1	1.1	3.6e-88	295.0	1.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2192)
7TM_GPCR_Srsx	PF10320.9	gi|390938122|ref|YP_006401860.1|	-	0.27	10.6	0.0	0.36	10.1	0.0	1.2	1	0	0	1	1	1	0	Serpentine	type	7TM	GPCR	chemoreceptor	Srsx
Radical_SAM	PF04055.21	gi|390938123|ref|YP_006401861.1|	-	9e-11	42.4	0.0	3.5e-10	40.5	0.0	1.8	1	1	1	2	2	2	1	Radical	SAM	superfamily
DUF1848	PF08902.11	gi|390938123|ref|YP_006401861.1|	-	0.002	17.9	6.8	0.1	12.3	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1848)
Nre_N	PF04894.12	gi|390938124|ref|YP_006401862.1|	-	3.1e-104	348.6	0.0	3.8e-104	348.3	0.0	1.1	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|390938124|ref|YP_006401862.1|	-	5.5e-35	119.6	0.0	8.5e-35	119.0	0.0	1.3	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
DUF913	PF06025.12	gi|390938124|ref|YP_006401862.1|	-	0.0093	15.0	0.0	0.013	14.5	0.0	1.1	1	0	0	1	1	1	1	Domain	of	Unknown	Function	(DUF913)
PALP	PF00291.25	gi|390938125|ref|YP_006401863.1|	-	1.8e-68	231.1	0.0	2e-68	230.9	0.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
FAD_binding_5	PF00941.21	gi|390938126|ref|YP_006401864.1|	-	9e-38	129.7	0.0	1.3e-37	129.2	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|390938126|ref|YP_006401864.1|	-	3.3e-13	49.7	0.0	6.8e-13	48.7	0.0	1.5	2	0	0	2	2	2	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
DUF2528	PF10800.8	gi|390938126|ref|YP_006401864.1|	-	0.15	12.7	0.0	0.29	11.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2528)
Fer2_2	PF01799.20	gi|390938127|ref|YP_006401865.1|	-	1.1e-26	92.7	0.0	1.7e-26	92.0	0.0	1.3	1	0	0	1	1	1	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|390938127|ref|YP_006401865.1|	-	3.1e-07	30.2	0.2	3.1e-07	30.2	0.2	1.9	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|390938127|ref|YP_006401865.1|	-	5.2e-05	23.2	0.1	8.4e-05	22.5	0.1	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|390938127|ref|YP_006401865.1|	-	0.005	16.9	0.3	0.045	13.8	0.3	2.3	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Ald_Xan_dh_C2	PF02738.18	gi|390938128|ref|YP_006401866.1|	-	1.2e-176	588.4	0.0	1.5e-176	588.1	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|390938128|ref|YP_006401866.1|	-	6.9e-24	84.3	0.0	1.3e-23	83.5	0.0	1.5	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
T2SSppdC	PF12528.8	gi|390938129|ref|YP_006401867.1|	-	0.11	13.3	0.0	0.17	12.6	0.0	1.3	1	0	0	1	1	1	0	Type	II	secretion	prepilin	peptidase	dependent	protein	C
ABC_tran	PF00005.27	gi|390938130|ref|YP_006401868.1|	-	6.8e-23	81.7	0.0	9.2e-23	81.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938130|ref|YP_006401868.1|	-	6.3e-10	39.3	0.2	0.00066	19.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390938130|ref|YP_006401868.1|	-	4.4e-05	23.0	0.0	0.16	11.4	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|390938130|ref|YP_006401868.1|	-	0.00054	20.4	0.0	0.0008	19.8	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|390938130|ref|YP_006401868.1|	-	0.0037	17.8	0.4	0.0065	17.0	0.4	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|390938130|ref|YP_006401868.1|	-	0.0061	16.8	0.1	0.043	14.1	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|390938130|ref|YP_006401868.1|	-	0.0069	15.7	0.0	0.01	15.1	0.0	1.2	1	0	0	1	1	1	1	Zeta	toxin
T2SSE	PF00437.20	gi|390938130|ref|YP_006401868.1|	-	0.0091	15.1	0.0	0.013	14.6	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|390938130|ref|YP_006401868.1|	-	0.041	13.6	0.1	0.08	12.7	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|390938130|ref|YP_006401868.1|	-	0.094	12.9	0.0	0.19	11.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|390938130|ref|YP_006401868.1|	-	0.15	11.7	0.0	0.23	11.0	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|390938130|ref|YP_006401868.1|	-	0.17	11.5	0.0	0.31	10.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|390938130|ref|YP_006401868.1|	-	0.18	11.4	0.3	0.31	10.6	0.3	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
ZnuA	PF01297.17	gi|390938131|ref|YP_006401869.1|	-	4.7e-20	72.1	0.0	5.8e-20	71.8	0.0	1.1	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
SabA_adhesion	PF18304.1	gi|390938131|ref|YP_006401869.1|	-	0.21	10.8	0.0	0.34	10.1	0.0	1.2	1	0	0	1	1	1	0	SabA	N-terminal	extracellular	adhesion	domain
ABC-3	PF00950.17	gi|390938132|ref|YP_006401870.1|	-	2.4e-21	76.4	30.0	2.4e-21	76.4	30.0	1.4	1	1	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.18	gi|390938132|ref|YP_006401870.1|	-	0.042	12.8	37.7	0.024	13.6	34.9	1.9	1	1	0	1	1	1	0	FecCD	transport	family
DAG1	PF05454.11	gi|390938132|ref|YP_006401870.1|	-	0.26	10.6	0.8	0.42	9.9	0.8	1.3	1	0	0	1	1	1	0	Dystroglycan	(Dystrophin-associated	glycoprotein	1)
Methyltransf_25	PF13649.6	gi|390938134|ref|YP_006401872.1|	-	0.00016	22.3	0.0	0.00029	21.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|390938134|ref|YP_006401872.1|	-	0.00028	20.6	0.0	0.00048	19.8	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
PrmA	PF06325.13	gi|390938134|ref|YP_006401872.1|	-	0.0074	15.7	0.0	0.014	14.8	0.0	1.4	1	1	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.12	gi|390938134|ref|YP_006401872.1|	-	0.0084	16.7	0.0	0.047	14.3	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|390938134|ref|YP_006401872.1|	-	0.018	14.3	0.3	0.98	8.7	0.1	2.9	2	1	0	2	2	2	0	ubiE/COQ5	methyltransferase	family
Methyltransf_30	PF05430.11	gi|390938134|ref|YP_006401872.1|	-	0.048	13.6	0.0	0.1	12.5	0.0	1.6	1	1	0	1	1	1	0	S-adenosyl-L-methionine-dependent	methyltransferase
Spermine_synth	PF01564.17	gi|390938134|ref|YP_006401872.1|	-	0.088	12.2	0.0	0.12	11.7	0.0	1.2	1	0	0	1	1	1	0	Spermine/spermidine	synthase	domain
Glutaredoxin	PF00462.24	gi|390938134|ref|YP_006401872.1|	-	0.15	12.3	0.0	0.63	10.3	0.0	2.0	1	1	0	1	1	1	0	Glutaredoxin
SMC_Nse1	PF07574.13	gi|390938135|ref|YP_006401873.1|	-	0.018	15.0	0.0	0.019	14.9	0.0	1.2	1	0	0	1	1	1	0	Nse1	non-SMC	component	of	SMC5-6	complex
DUF5442	PF17514.2	gi|390938135|ref|YP_006401873.1|	-	0.071	13.3	0.0	0.1	12.8	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5442)
ANAPC2	PF08672.11	gi|390938135|ref|YP_006401873.1|	-	0.11	13.1	0.0	0.24	12.0	0.0	1.6	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
Q_salvage	PF10343.9	gi|390938136|ref|YP_006401874.1|	-	0.0066	16.1	0.0	0.097	12.2	0.0	2.1	1	1	0	1	1	1	1	Potential	Queuosine,	Q,	salvage	protein	family
AGOG	PF09171.10	gi|390938136|ref|YP_006401874.1|	-	0.01	15.1	0.0	0.016	14.5	0.0	1.2	1	0	0	1	1	1	0	N-glycosylase/DNA	lyase
DUF1264	PF06884.11	gi|390938137|ref|YP_006401875.1|	-	0.086	12.4	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1264)
POR	PF01558.18	gi|390938139|ref|YP_006401877.1|	-	8.7e-32	110.6	0.0	1e-31	110.4	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_C	PF02775.21	gi|390938140|ref|YP_006401878.1|	-	1.4e-19	70.4	0.0	2.8e-19	69.4	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|390938140|ref|YP_006401878.1|	-	1.3e-14	54.6	0.1	2.3e-14	53.7	0.1	1.4	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.27	gi|390938140|ref|YP_006401878.1|	-	1.3e-11	43.8	10.9	2.4e-07	30.3	2.9	2.9	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|390938140|ref|YP_006401878.1|	-	1.6e-09	37.4	12.2	2.9e-05	23.9	2.0	2.8	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390938140|ref|YP_006401878.1|	-	3e-07	30.9	7.6	0.00072	20.1	0.9	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|390938140|ref|YP_006401878.1|	-	2.3e-06	27.3	17.5	0.00068	19.6	0.9	2.9	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|390938140|ref|YP_006401878.1|	-	1.1e-05	25.5	11.8	0.00011	22.2	11.7	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|390938140|ref|YP_006401878.1|	-	1.6e-05	24.9	9.6	4.4e-05	23.6	9.6	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|390938140|ref|YP_006401878.1|	-	0.0002	21.4	12.0	0.027	14.6	1.4	2.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|390938140|ref|YP_006401878.1|	-	0.00059	20.7	8.1	0.0022	18.9	1.2	2.6	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|390938140|ref|YP_006401878.1|	-	0.001	19.5	5.5	0.26	11.8	0.8	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|390938140|ref|YP_006401878.1|	-	0.0068	16.8	2.3	0.0068	16.8	2.3	2.9	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Transket_pyr	PF02779.24	gi|390938140|ref|YP_006401878.1|	-	0.01	15.5	0.1	0.032	13.9	0.1	1.9	2	1	0	2	2	2	0	Transketolase,	pyrimidine	binding	domain
TPP_enzyme_N	PF02776.18	gi|390938140|ref|YP_006401878.1|	-	0.041	13.5	0.6	0.11	12.1	0.1	2.1	3	0	0	3	3	3	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_3	PF12798.7	gi|390938140|ref|YP_006401878.1|	-	0.93	10.6	17.6	0.067	14.2	4.5	2.9	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|390938140|ref|YP_006401878.1|	-	1.7	9.3	13.4	1.1e+02	3.5	3.1	2.7	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|390938140|ref|YP_006401878.1|	-	3.6	8.2	12.1	9.6	6.8	1.3	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Metallophos_2	PF12850.7	gi|390938143|ref|YP_006401881.1|	-	3.1e-07	30.7	0.0	4.9e-07	30.1	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|390938143|ref|YP_006401881.1|	-	1.5e-06	28.9	1.7	1.1e-05	26.0	1.7	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
HAD	PF12710.7	gi|390938143|ref|YP_006401881.1|	-	0.2	12.0	0.0	0.31	11.4	0.0	1.3	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Lon_C	PF05362.13	gi|390938144|ref|YP_006401882.1|	-	2.7e-11	43.4	0.0	4.8e-11	42.6	0.0	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
Peptidase_M48	PF01435.18	gi|390938145|ref|YP_006401883.1|	-	3.4e-42	144.5	0.1	1.5e-41	142.3	0.0	2.1	2	1	0	2	2	2	1	Peptidase	family	M48
Borrelia_P13	PF05628.12	gi|390938145|ref|YP_006401883.1|	-	0.077	12.9	0.5	0.077	12.9	0.5	2.8	2	1	1	3	3	3	0	Borrelia	membrane	protein	P13
Yip1	PF04893.17	gi|390938145|ref|YP_006401883.1|	-	0.67	9.7	28.7	1.8	8.3	0.7	2.4	2	0	0	2	2	2	0	Yip1	domain
DUF3938	PF13074.6	gi|390938145|ref|YP_006401883.1|	-	2.1	8.7	13.7	0.28	11.5	6.3	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3938)
Proton_antipo_N	PF00662.20	gi|390938145|ref|YP_006401883.1|	-	3	8.0	10.5	0.1	12.7	1.7	2.8	2	1	0	2	2	2	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF5368	PF17336.2	gi|390938146|ref|YP_006401884.1|	-	0.83	9.9	12.0	2.7	8.2	2.3	2.5	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5368)
Thioredoxin_7	PF13899.6	gi|390938147|ref|YP_006401885.1|	-	2.4e-13	50.1	0.0	6.1e-13	48.8	0.0	1.7	2	0	0	2	2	2	1	Thioredoxin-like
Glutaredoxin	PF00462.24	gi|390938147|ref|YP_006401885.1|	-	0.0058	16.8	0.0	0.01	16.1	0.0	1.5	1	0	0	1	1	1	1	Glutaredoxin
Thioredoxin_2	PF13098.6	gi|390938147|ref|YP_006401885.1|	-	0.012	16.0	0.0	0.069	13.6	0.0	2.0	1	1	0	1	1	1	0	Thioredoxin-like	domain
Pput2613-deam	PF14427.6	gi|390938147|ref|YP_006401885.1|	-	0.079	12.9	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Pput_2613-like	deaminase
FixS	PF03597.15	gi|390938147|ref|YP_006401885.1|	-	0.097	12.4	4.6	0.17	11.6	4.6	1.4	1	0	0	1	1	1	0	Cytochrome	oxidase	maturation	protein	cbb3-type
DHH	PF01368.20	gi|390938148|ref|YP_006401886.1|	-	0.0058	16.8	0.0	0.0093	16.2	0.0	1.2	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.19	gi|390938148|ref|YP_006401886.1|	-	0.026	15.0	0.1	0.096	13.1	0.1	2.0	1	1	0	1	1	1	0	DHHA1	domain
Glyco_hydro_57	PF03065.15	gi|390938149|ref|YP_006401887.1|	-	2.2e-30	106.0	5.7	1.8e-28	99.7	0.0	2.6	2	1	1	3	3	3	2	Glycosyl	hydrolase	family	57
Glycos_transf_1	PF00534.20	gi|390938150|ref|YP_006401888.1|	-	1.2e-23	83.5	0.0	2.3e-23	82.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.11	gi|390938150|ref|YP_006401888.1|	-	2.6e-21	76.4	0.0	4.3e-21	75.7	0.0	1.3	1	0	0	1	1	1	1	Starch	synthase	catalytic	domain
Glyco_trans_1_4	PF13692.6	gi|390938150|ref|YP_006401888.1|	-	7.5e-17	62.0	0.0	1.6e-16	60.9	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|390938150|ref|YP_006401888.1|	-	2.1e-13	50.6	0.0	5.8e-13	49.2	0.0	1.7	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|390938150|ref|YP_006401888.1|	-	7.9e-09	36.1	0.0	2.7e-08	34.4	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|390938150|ref|YP_006401888.1|	-	0.00033	21.0	0.0	0.00071	19.9	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF1925	PF09094.11	gi|390938151|ref|YP_006401889.1|	-	2.3e-33	114.3	0.9	4.1e-33	113.5	0.9	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1925)
Glyco_hydro_57	PF03065.15	gi|390938151|ref|YP_006401889.1|	-	1e-32	113.7	0.0	2e-32	112.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
DUF1926	PF09095.11	gi|390938151|ref|YP_006401889.1|	-	1.1e-21	77.8	0.0	1.3e-10	41.4	0.0	2.2	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF1926)
Glyco_hydro_57	PF03065.15	gi|390938152|ref|YP_006401890.1|	-	1.9e-67	227.8	0.3	2.7e-67	227.3	0.3	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
EGF_Tenascin	PF18720.1	gi|390938153|ref|YP_006401891.1|	-	0.1	12.7	0.1	0.21	11.6	0.1	1.5	1	0	0	1	1	1	0	Tenascin	EGF	domain
HTH_24	PF13412.6	gi|390938154|ref|YP_006401892.1|	-	8.5e-09	34.8	0.3	2e-08	33.7	0.0	1.8	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|390938154|ref|YP_006401892.1|	-	1.7e-08	34.3	2.6	1.6e-06	28.0	0.0	3.1	3	0	0	3	3	3	1	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|390938154|ref|YP_006401892.1|	-	1.5e-07	31.2	0.0	2.7e-07	30.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|390938154|ref|YP_006401892.1|	-	1.9e-07	30.9	0.3	6.8e-07	29.1	0.1	1.9	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|390938154|ref|YP_006401892.1|	-	8.8e-07	28.8	0.0	2.1e-06	27.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|390938154|ref|YP_006401892.1|	-	1.5e-06	28.4	0.0	3e-06	27.5	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|390938154|ref|YP_006401892.1|	-	1.9e-06	27.7	0.0	4.6e-06	26.5	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|390938154|ref|YP_006401892.1|	-	2.6e-06	27.3	0.0	5.3e-06	26.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|390938154|ref|YP_006401892.1|	-	1.2e-05	25.3	0.2	0.00013	21.9	0.0	2.2	2	0	0	2	2	2	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_20	PF12840.7	gi|390938154|ref|YP_006401892.1|	-	1.4e-05	25.1	0.0	2.8e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|390938154|ref|YP_006401892.1|	-	1.5e-05	24.7	0.0	3e-05	23.7	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|390938154|ref|YP_006401892.1|	-	1.5e-05	24.9	0.0	2.8e-05	24.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
LexA_DNA_bind	PF01726.16	gi|390938154|ref|YP_006401892.1|	-	2.3e-05	24.1	0.0	6.1e-05	22.7	0.0	1.7	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_5	PF01022.20	gi|390938154|ref|YP_006401892.1|	-	2.6e-05	24.0	0.2	8.8e-05	22.3	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
DUF505	PF04458.12	gi|390938154|ref|YP_006401892.1|	-	3.5e-05	22.4	0.1	3.7e-05	22.3	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
TrmB	PF01978.19	gi|390938154|ref|YP_006401892.1|	-	4.4e-05	23.3	0.3	9.9e-05	22.2	0.0	1.7	2	0	0	2	2	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|390938154|ref|YP_006401892.1|	-	8.6e-05	22.6	0.0	0.00014	21.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|390938154|ref|YP_006401892.1|	-	0.00011	21.9	0.0	0.00027	20.6	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
GntR	PF00392.21	gi|390938154|ref|YP_006401892.1|	-	0.00017	21.2	0.0	0.00038	20.0	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_IclR	PF09339.10	gi|390938154|ref|YP_006401892.1|	-	0.00017	21.3	0.0	0.00028	20.6	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_10	PF04967.12	gi|390938154|ref|YP_006401892.1|	-	0.00036	20.3	0.0	0.00087	19.0	0.0	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|390938154|ref|YP_006401892.1|	-	0.00049	19.7	0.0	0.00092	18.8	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
Fe_dep_repress	PF01325.19	gi|390938154|ref|YP_006401892.1|	-	0.00059	20.0	0.1	0.0016	18.6	0.0	1.7	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_3	PF01381.22	gi|390938154|ref|YP_006401892.1|	-	0.0009	19.3	0.0	0.0017	18.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
RPA_C	PF08784.11	gi|390938154|ref|YP_006401892.1|	-	0.00099	19.7	0.0	0.0017	19.0	0.0	1.4	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
Sigma70_ECF	PF07638.11	gi|390938154|ref|YP_006401892.1|	-	0.0021	18.0	0.0	0.0035	17.3	0.0	1.3	1	0	0	1	1	1	1	ECF	sigma	factor
DprA_WH	PF17782.1	gi|390938154|ref|YP_006401892.1|	-	0.0021	18.1	0.0	0.0038	17.3	0.0	1.3	1	0	0	1	1	1	1	DprA	winged	helix	domain
MerR	PF00376.23	gi|390938154|ref|YP_006401892.1|	-	0.0025	17.6	0.3	0.021	14.6	0.3	2.2	1	1	0	1	1	1	1	MerR	family	regulatory	protein
HTH_40	PF14493.6	gi|390938154|ref|YP_006401892.1|	-	0.0029	18.0	0.1	0.0096	16.4	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
GerE	PF00196.19	gi|390938154|ref|YP_006401892.1|	-	0.0037	16.8	0.0	0.0064	16.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
TnsD	PF15978.5	gi|390938154|ref|YP_006401892.1|	-	0.004	16.2	0.0	0.0062	15.6	0.0	1.2	1	0	0	1	1	1	1	Tn7-like	transposition	protein	D
HTH_7	PF02796.15	gi|390938154|ref|YP_006401892.1|	-	0.0052	16.8	0.0	0.0095	16.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
RP-C	PF03428.13	gi|390938154|ref|YP_006401892.1|	-	0.0065	16.1	0.0	0.01	15.5	0.0	1.2	1	0	0	1	1	1	1	Replication	protein	C	N-terminal	domain
MerR_1	PF13411.6	gi|390938154|ref|YP_006401892.1|	-	0.0067	16.5	0.0	0.017	15.2	0.0	1.7	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
HemN_C	PF06969.16	gi|390938154|ref|YP_006401892.1|	-	0.012	15.7	0.0	0.025	14.7	0.0	1.4	1	0	0	1	1	1	0	HemN	C-terminal	domain
HTH_27	PF13463.6	gi|390938154|ref|YP_006401892.1|	-	0.013	16.0	0.2	0.037	14.5	0.1	1.9	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
HTH_38	PF13936.6	gi|390938154|ref|YP_006401892.1|	-	0.014	15.1	0.1	0.025	14.3	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
FaeA	PF04703.12	gi|390938154|ref|YP_006401892.1|	-	0.015	15.7	0.0	0.036	14.4	0.0	1.7	1	0	0	1	1	1	0	FaeA-like	protein
HTH_Tnp_1	PF01527.20	gi|390938154|ref|YP_006401892.1|	-	0.015	15.6	0.0	0.045	14.1	0.0	1.8	2	0	0	2	2	2	0	Transposase
HTH_19	PF12844.7	gi|390938154|ref|YP_006401892.1|	-	0.028	14.4	0.5	0.1	12.6	0.0	2.2	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|390938154|ref|YP_006401892.1|	-	0.03	13.7	0.0	0.049	13.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Sigma70_r4	PF04545.16	gi|390938154|ref|YP_006401892.1|	-	0.032	13.8	0.1	0.065	12.8	0.1	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
Penicillinase_R	PF03965.16	gi|390938154|ref|YP_006401892.1|	-	0.034	14.5	0.1	0.13	12.7	0.0	1.9	2	0	0	2	2	2	0	Penicillinase	repressor
B-block_TFIIIC	PF04182.12	gi|390938154|ref|YP_006401892.1|	-	0.042	14.0	0.0	0.074	13.2	0.0	1.5	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
SgrR_N	PF12793.7	gi|390938154|ref|YP_006401892.1|	-	0.046	13.9	0.0	0.17	12.1	0.0	1.9	2	0	0	2	2	1	0	Sugar	transport-related	sRNA	regulator	N-term
FeoC	PF09012.10	gi|390938154|ref|YP_006401892.1|	-	0.046	13.8	0.0	0.11	12.6	0.0	1.6	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
Mga	PF05043.13	gi|390938154|ref|YP_006401892.1|	-	0.053	14.1	0.1	0.16	12.6	0.0	1.8	2	0	0	2	2	1	0	Mga	helix-turn-helix	domain
RasGAP_C	PF03836.15	gi|390938154|ref|YP_006401892.1|	-	0.056	13.6	3.3	1.2	9.2	0.0	2.8	2	1	0	2	2	2	0	RasGAP	C-terminus
HTH_CodY	PF08222.11	gi|390938154|ref|YP_006401892.1|	-	0.058	13.0	0.0	0.13	11.9	0.0	1.6	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_Tnp_Tc3_1	PF11427.8	gi|390938154|ref|YP_006401892.1|	-	0.062	13.2	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	Tc3	transposase
Ribosomal_S25	PF03297.15	gi|390938154|ref|YP_006401892.1|	-	0.067	13.4	0.1	0.69	10.2	0.0	2.3	2	1	0	2	2	2	0	S25	ribosomal	protein
SelB-wing_2	PF09106.11	gi|390938154|ref|YP_006401892.1|	-	0.086	13.0	0.2	0.32	11.2	0.0	1.9	3	0	0	3	3	1	0	Elongation	factor	SelB,	winged	helix
ANAPC2	PF08672.11	gi|390938154|ref|YP_006401892.1|	-	0.095	13.2	0.5	2.4	8.7	0.0	2.7	3	0	0	3	3	2	0	Anaphase	promoting	complex	(APC)	subunit	2
AbiEi_4	PF13338.6	gi|390938154|ref|YP_006401892.1|	-	0.13	12.4	0.0	0.28	11.4	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_26	PF13443.6	gi|390938154|ref|YP_006401892.1|	-	0.14	12.6	0.0	0.24	11.8	0.0	1.4	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
DUF746	PF05344.11	gi|390938154|ref|YP_006401892.1|	-	0.14	12.0	0.0	0.31	10.9	0.0	1.5	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF746)
HTH_AsnC-type	PF13404.6	gi|390938154|ref|YP_006401892.1|	-	0.25	11.2	0.8	0.65	9.9	0.1	1.9	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
ABC2_membrane_3	PF12698.7	gi|390938155|ref|YP_006401893.1|	-	2.1e-22	79.7	24.2	2.7e-22	79.4	24.2	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|390938155|ref|YP_006401893.1|	-	9.5e-15	54.6	19.6	1.2e-14	54.3	19.6	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|390938155|ref|YP_006401893.1|	-	0.0026	17.8	13.7	0.0026	17.8	13.7	3.2	3	0	0	3	3	3	1	ABC-2	family	transporter	protein
UPF0180	PF03698.13	gi|390938155|ref|YP_006401893.1|	-	0.086	13.0	0.0	0.18	12.0	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0180)
LAGLIDADG_3	PF14528.6	gi|390938155|ref|YP_006401893.1|	-	0.14	12.5	0.1	0.34	11.3	0.1	1.7	1	0	0	1	1	1	0	LAGLIDADG-like	domain
ABC_tran	PF00005.27	gi|390938156|ref|YP_006401894.1|	-	9.3e-26	91.0	0.0	1.4e-25	90.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938156|ref|YP_006401894.1|	-	6.4e-13	49.2	0.9	9.4e-06	25.6	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SRP54	PF00448.22	gi|390938156|ref|YP_006401894.1|	-	0.0033	17.1	0.0	0.0088	15.7	0.0	1.6	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_29	PF13555.6	gi|390938156|ref|YP_006401894.1|	-	0.0086	15.8	0.1	0.016	15.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|390938156|ref|YP_006401894.1|	-	0.011	16.3	0.2	0.016	15.7	0.2	1.2	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|390938156|ref|YP_006401894.1|	-	0.013	15.0	0.1	0.92	8.9	0.1	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|390938156|ref|YP_006401894.1|	-	0.016	14.9	0.1	0.03	14.0	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|390938156|ref|YP_006401894.1|	-	0.036	12.7	0.1	2.1	6.9	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.6	gi|390938156|ref|YP_006401894.1|	-	0.042	13.5	0.0	0.062	13.0	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|390938156|ref|YP_006401894.1|	-	0.062	13.7	0.0	0.11	12.9	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP_bind_1	PF03029.17	gi|390938156|ref|YP_006401894.1|	-	0.11	12.3	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
Rad17	PF03215.15	gi|390938156|ref|YP_006401894.1|	-	0.21	11.5	0.0	0.44	10.5	0.0	1.5	2	0	0	2	2	2	0	Rad17	P-loop	domain
ThiP_synth	PF10120.9	gi|390938158|ref|YP_006401896.1|	-	2e-40	138.1	0.0	2.9e-40	137.6	0.0	1.2	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_23	PF13384.6	gi|390938158|ref|YP_006401896.1|	-	0.0016	18.2	0.0	0.0036	17.1	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_37	PF13744.6	gi|390938158|ref|YP_006401896.1|	-	0.0036	17.2	0.1	0.0066	16.4	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|390938158|ref|YP_006401896.1|	-	0.018	14.6	0.4	0.93	9.1	0.4	2.5	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_3	PF01381.22	gi|390938158|ref|YP_006401896.1|	-	0.071	13.2	0.0	0.17	12.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix
HTH_6	PF01418.17	gi|390938158|ref|YP_006401896.1|	-	0.16	11.9	0.0	0.36	10.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
ApbA_C	PF08546.11	gi|390938159|ref|YP_006401897.1|	-	1.9e-24	86.2	0.0	6e-24	84.6	0.0	1.8	3	0	0	3	3	3	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
ApbA	PF02558.16	gi|390938159|ref|YP_006401897.1|	-	8.1e-23	80.7	0.0	1.3e-22	80.1	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.17	gi|390938159|ref|YP_006401897.1|	-	0.00021	21.8	0.0	0.0004	20.9	0.0	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
DAO	PF01266.24	gi|390938159|ref|YP_006401897.1|	-	0.001	18.7	3.1	0.0016	18.1	2.7	1.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|390938159|ref|YP_006401897.1|	-	0.004	16.4	0.1	0.0065	15.8	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|390938159|ref|YP_006401897.1|	-	0.016	15.4	0.2	0.044	14.0	0.2	1.9	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
NAD_Gly3P_dh_N	PF01210.23	gi|390938159|ref|YP_006401897.1|	-	0.043	13.8	0.0	0.18	11.8	0.0	2.1	2	1	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pantoate_transf	PF02548.15	gi|390938160|ref|YP_006401898.1|	-	1.8e-107	358.6	0.4	2e-107	358.4	0.4	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.6	gi|390938160|ref|YP_006401898.1|	-	1.7e-06	27.7	3.3	0.014	14.9	0.2	3.0	2	1	1	3	3	3	2	Phosphoenolpyruvate	phosphomutase
Amdase	PF17645.1	gi|390938160|ref|YP_006401898.1|	-	0.14	11.7	0.5	1.9	8.0	0.1	2.3	1	1	1	2	2	2	0	Arylmalonate	decarboxylase
ABC2_membrane_3	PF12698.7	gi|390938161|ref|YP_006401899.1|	-	1e-17	64.3	38.4	1.3e-17	64.0	38.4	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|390938161|ref|YP_006401899.1|	-	1.3e-10	41.1	37.3	2.3e-10	40.2	37.3	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|390938161|ref|YP_006401899.1|	-	4.6e-05	22.9	17.0	4.6e-05	22.9	17.0	3.5	2	1	1	3	3	3	2	ABC-2	type	transporter
ABC_tran	PF00005.27	gi|390938162|ref|YP_006401900.1|	-	9e-28	97.5	0.0	1.9e-27	96.4	0.0	1.5	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|390938162|ref|YP_006401900.1|	-	2.9e-17	63.4	0.3	8.1e-10	39.0	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390938162|ref|YP_006401900.1|	-	1.1e-05	25.0	0.3	0.032	13.6	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|390938162|ref|YP_006401900.1|	-	5.7e-05	23.7	0.4	0.00018	22.1	0.4	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|390938162|ref|YP_006401900.1|	-	0.0002	21.2	0.1	0.0049	16.6	0.0	2.1	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|390938162|ref|YP_006401900.1|	-	0.00094	18.9	0.1	0.0017	18.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|390938162|ref|YP_006401900.1|	-	0.0054	16.5	0.0	0.028	14.1	0.1	2.0	2	1	1	3	3	3	1	AAA	domain
AAA_16	PF13191.6	gi|390938162|ref|YP_006401900.1|	-	0.015	15.7	0.0	0.028	14.8	0.0	1.4	2	0	0	2	2	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|390938162|ref|YP_006401900.1|	-	0.018	15.5	0.1	0.027	14.9	0.1	1.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SRP54	PF00448.22	gi|390938162|ref|YP_006401900.1|	-	0.018	14.7	0.1	0.037	13.7	0.1	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.6	gi|390938162|ref|YP_006401900.1|	-	0.018	15.3	0.1	0.056	13.7	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
Rad17	PF03215.15	gi|390938162|ref|YP_006401900.1|	-	0.034	14.1	0.0	0.078	12.9	0.0	1.6	1	1	0	1	1	1	0	Rad17	P-loop	domain
AAA_13	PF13166.6	gi|390938162|ref|YP_006401900.1|	-	0.042	12.5	0.1	1	7.9	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|390938162|ref|YP_006401900.1|	-	0.05	13.6	0.1	1.6	8.8	0.0	2.2	1	1	0	2	2	2	0	AAA	domain
ATPase_2	PF01637.18	gi|390938162|ref|YP_006401900.1|	-	0.059	13.3	0.2	0.11	12.4	0.2	1.6	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_27	PF13514.6	gi|390938162|ref|YP_006401900.1|	-	0.091	12.3	0.0	0.15	11.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|390938162|ref|YP_006401900.1|	-	0.092	12.7	0.1	0.34	10.8	0.0	1.9	2	1	0	2	2	2	0	NACHT	domain
AAA_19	PF13245.6	gi|390938162|ref|YP_006401900.1|	-	0.11	12.8	0.1	0.21	11.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
PhosphMutase	PF10143.9	gi|390938163|ref|YP_006401901.1|	-	2.3e-49	167.5	0.0	3.4e-49	167.0	0.0	1.2	1	0	0	1	1	1	1	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
Metalloenzyme	PF01676.18	gi|390938163|ref|YP_006401901.1|	-	2e-30	106.0	0.0	2.6e-30	105.6	0.0	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|390938163|ref|YP_006401901.1|	-	0.0014	18.3	0.0	0.0023	17.6	0.0	1.3	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.12	gi|390938163|ref|YP_006401901.1|	-	0.12	12.4	0.0	0.22	11.6	0.0	1.3	1	0	0	1	1	1	0	PglZ	domain
AcMNPV_Ac109	PF05054.12	gi|390938164|ref|YP_006401902.1|	-	0.035	13.2	0.3	0.068	12.2	0.2	1.4	1	1	0	1	1	1	0	Autographa	californica	nuclear	polyhedrosis	virus	(AcMNPV)	protein
GHMP_kinases_N	PF00288.26	gi|390938164|ref|YP_006401902.1|	-	0.038	14.2	1.3	0.074	13.3	1.3	1.5	1	0	0	1	1	1	0	GHMP	kinases	N	terminal	domain
PPS_PS	PF02006.16	gi|390938165|ref|YP_006401903.1|	-	5.8e-80	267.0	2.7	7.1e-80	266.7	2.7	1.1	1	0	0	1	1	1	1	Phosphopantothenate/pantothenate	synthetase
Ad_Cy_reg	PF16701.5	gi|390938165|ref|YP_006401903.1|	-	0.026	14.3	1.0	0.08	12.7	0.1	2.2	2	1	0	2	2	2	0	Adenylate	cyclase	regulatory	domain
AAA_18	PF13238.6	gi|390938166|ref|YP_006401904.1|	-	0.13	12.8	0.0	0.23	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DFP	PF04127.15	gi|390938167|ref|YP_006401905.1|	-	2.5e-53	180.7	0.0	1.3e-52	178.3	0.0	1.9	2	0	0	2	2	2	1	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|390938167|ref|YP_006401905.1|	-	1.1e-32	113.0	0.0	1.8e-32	112.3	0.0	1.3	1	0	0	1	1	1	1	Flavoprotein
Acetyltransf_1	PF00583.25	gi|390938168|ref|YP_006401906.1|	-	5.5e-16	58.9	0.4	1e-15	58.0	0.3	1.5	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|390938168|ref|YP_006401906.1|	-	8.3e-12	45.4	0.3	1.4e-11	44.6	0.3	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|390938168|ref|YP_006401906.1|	-	5.6e-10	39.2	0.2	9.2e-10	38.5	0.1	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|390938168|ref|YP_006401906.1|	-	7.3e-09	35.5	0.0	1.3e-08	34.7	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|390938168|ref|YP_006401906.1|	-	1.8e-05	24.9	0.3	2.5e-05	24.5	0.3	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|390938168|ref|YP_006401906.1|	-	3.7e-05	23.8	0.8	8.2e-05	22.7	0.8	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|390938168|ref|YP_006401906.1|	-	5.4e-05	22.9	0.0	8.3e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|390938168|ref|YP_006401906.1|	-	0.0045	17.7	0.0	0.0053	17.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|390938168|ref|YP_006401906.1|	-	0.049	13.2	0.1	0.085	12.4	0.1	1.4	1	1	0	1	1	1	0	GNAT	acetyltransferase
tRNA-synt_2	PF00152.20	gi|390938169|ref|YP_006401907.1|	-	2.2e-89	299.6	0.0	2.6e-89	299.4	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|390938169|ref|YP_006401907.1|	-	1.4e-10	41.0	0.4	2.4e-10	40.3	0.4	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|390938169|ref|YP_006401907.1|	-	0.0068	15.9	0.0	0.043	13.3	0.0	2.0	2	0	0	2	2	2	1	tRNA	synthetases	class	II	core	domain	(F)
HhH-GPD	PF00730.25	gi|390938170|ref|YP_006401908.1|	-	1.4e-17	64.1	0.0	1.9e-17	63.6	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
EndIII_4Fe-2S	PF10576.9	gi|390938170|ref|YP_006401908.1|	-	0.00075	19.8	6.3	0.0015	18.8	6.3	1.6	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH	PF00633.23	gi|390938170|ref|YP_006401908.1|	-	0.012	15.4	0.0	0.026	14.4	0.0	1.5	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
Met_10	PF02475.16	gi|390938171|ref|YP_006401909.1|	-	2.1e-55	187.6	0.0	2.9e-55	187.1	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
TRM	PF02005.16	gi|390938171|ref|YP_006401909.1|	-	1.6e-07	30.9	0.0	2.2e-07	30.4	0.0	1.2	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_15	PF09445.10	gi|390938171|ref|YP_006401909.1|	-	1.7e-06	27.7	0.0	2.4e-06	27.2	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
PrmA	PF06325.13	gi|390938171|ref|YP_006401909.1|	-	6.5e-05	22.5	0.0	0.0001	21.8	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_16	PF10294.9	gi|390938171|ref|YP_006401909.1|	-	0.00085	19.1	0.0	0.0013	18.5	0.0	1.3	1	0	0	1	1	1	1	Lysine	methyltransferase
Methyltransf_18	PF12847.7	gi|390938171|ref|YP_006401909.1|	-	0.0033	17.4	0.0	0.0061	16.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|390938171|ref|YP_006401909.1|	-	0.022	14.3	0.0	0.038	13.5	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|390938171|ref|YP_006401909.1|	-	0.039	14.6	0.0	0.09	13.5	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|390938171|ref|YP_006401909.1|	-	0.042	13.5	0.0	0.057	13.1	0.0	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
Transglut_core	PF01841.19	gi|390938172|ref|YP_006401910.1|	-	3.9e-09	37.0	0.0	6.5e-09	36.2	0.0	1.4	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
PhoH	PF02562.16	gi|390938173|ref|YP_006401911.1|	-	1.2e-44	152.3	0.0	1.6e-44	151.8	0.0	1.2	1	0	0	1	1	1	1	PhoH-like	protein
KH_1	PF00013.29	gi|390938173|ref|YP_006401911.1|	-	2.2e-05	24.2	0.9	0.0013	18.6	0.1	2.7	2	0	0	2	2	2	1	KH	domain
KH_2	PF07650.17	gi|390938173|ref|YP_006401911.1|	-	2.8e-05	23.9	2.5	0.00044	20.0	0.4	2.5	1	1	1	2	2	2	1	KH	domain
ABC_tran	PF00005.27	gi|390938173|ref|YP_006401911.1|	-	0.01	16.4	0.1	0.12	12.9	0.0	2.2	2	0	0	2	2	2	0	ABC	transporter
DEAD	PF00270.29	gi|390938173|ref|YP_006401911.1|	-	0.025	14.4	0.0	0.038	13.8	0.0	1.3	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
KH_5	PF13184.6	gi|390938173|ref|YP_006401911.1|	-	0.032	14.3	1.1	3.3	7.9	0.0	2.8	3	0	0	3	3	3	0	NusA-like	KH	domain
Terminase_GpA	PF05876.12	gi|390938173|ref|YP_006401911.1|	-	0.15	10.6	0.0	0.21	10.1	0.0	1.1	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
AAA_22	PF13401.6	gi|390938173|ref|YP_006401911.1|	-	0.16	12.3	0.2	0.6	10.4	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
TrmB	PF01978.19	gi|390938175|ref|YP_006401913.1|	-	2.2e-05	24.2	0.1	4.8e-05	23.2	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.16	gi|390938175|ref|YP_006401913.1|	-	0.00015	22.1	0.1	0.00027	21.3	0.1	1.4	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_IclR	PF09339.10	gi|390938175|ref|YP_006401913.1|	-	0.00025	20.8	0.0	0.00045	20.0	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|390938175|ref|YP_006401913.1|	-	0.00084	19.2	0.5	0.0025	17.7	0.3	2.0	1	1	1	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|390938175|ref|YP_006401913.1|	-	0.0034	17.2	0.1	0.0066	16.3	0.1	1.5	1	1	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|390938175|ref|YP_006401913.1|	-	0.03	14.2	0.0	0.053	13.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|390938175|ref|YP_006401913.1|	-	0.03	14.8	0.1	0.062	13.8	0.1	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2250	PF10007.9	gi|390938175|ref|YP_006401913.1|	-	0.053	13.6	0.0	0.11	12.6	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
GntR	PF00392.21	gi|390938175|ref|YP_006401913.1|	-	0.058	13.1	0.1	0.12	12.1	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.20	gi|390938175|ref|YP_006401913.1|	-	0.085	13.2	0.0	0.17	12.3	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_24	PF13412.6	gi|390938175|ref|YP_006401913.1|	-	0.096	12.3	0.2	0.32	10.6	0.2	1.9	1	1	1	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Replic_Relax	PF13814.6	gi|390938175|ref|YP_006401913.1|	-	0.17	12.0	0.1	0.23	11.5	0.1	1.2	1	0	0	1	1	1	0	Replication-relaxation
Phlebovirus_NSM	PF07246.11	gi|390938176|ref|YP_006401914.1|	-	0.0067	15.8	0.2	0.0076	15.7	0.2	1.1	1	0	0	1	1	1	1	Phlebovirus	nonstructural	protein	NS-M
YkyA	PF10368.9	gi|390938176|ref|YP_006401914.1|	-	0.018	14.7	0.3	0.024	14.3	0.3	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
Peptidase_M3	PF01432.20	gi|390938176|ref|YP_006401914.1|	-	0.057	12.7	0.2	0.14	11.4	0.1	1.5	1	1	1	2	2	2	0	Peptidase	family	M3
BLOC1_2	PF10046.9	gi|390938176|ref|YP_006401914.1|	-	0.058	13.7	0.7	0.39	11.0	0.4	2.0	1	1	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
SH2_2	PF14633.6	gi|390938176|ref|YP_006401914.1|	-	0.083	12.3	0.4	0.1	12.0	0.4	1.3	1	0	0	1	1	1	0	SH2	domain
FerA	PF08165.11	gi|390938176|ref|YP_006401914.1|	-	0.1	12.5	1.5	4.6	7.2	0.1	2.9	1	1	1	2	2	2	0	FerA	(NUC095)	domain
DUF1041	PF06292.17	gi|390938176|ref|YP_006401914.1|	-	0.13	12.7	0.2	2.9	8.3	0.1	2.1	1	1	1	2	2	2	0	Domain	of	Unknown	Function	(DUF1041)
DevR	PF01905.16	gi|390938177|ref|YP_006401915.1|	-	9e-54	182.3	0.0	1.2e-53	182.0	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
SepSecS	PF05889.13	gi|390938177|ref|YP_006401915.1|	-	0.065	11.9	0.0	0.13	11.0	0.0	1.4	1	0	0	1	1	1	0	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Cas_Cas5d	PF09704.10	gi|390938178|ref|YP_006401916.1|	-	2.4e-08	34.1	0.0	7.5e-08	32.5	0.0	1.8	1	1	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
DEAD	PF00270.29	gi|390938179|ref|YP_006401917.1|	-	6.4e-12	45.6	0.0	1.2e-10	41.4	0.0	2.5	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|390938179|ref|YP_006401917.1|	-	3.7e-08	33.7	0.4	1.5e-07	31.7	0.4	2.1	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|390938179|ref|YP_006401917.1|	-	2.6e-06	27.6	0.0	7.8e-06	26.0	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.6	gi|390938179|ref|YP_006401917.1|	-	0.00025	21.4	0.0	0.005	17.2	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|390938179|ref|YP_006401917.1|	-	0.0066	16.2	0.0	0.036	13.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
Flavi_DEAD	PF07652.14	gi|390938179|ref|YP_006401917.1|	-	0.06	13.3	0.5	1.6	8.7	0.0	3.1	3	1	1	4	4	4	0	Flavivirus	DEAD	domain
Peptidase_M16_M	PF16187.5	gi|390938179|ref|YP_006401917.1|	-	0.084	12.2	0.0	0.14	11.4	0.0	1.3	1	0	0	1	1	1	0	Middle	or	third	domain	of	peptidase_M16
HD	PF01966.22	gi|390938180|ref|YP_006401918.1|	-	1.1e-05	25.7	0.1	2.3e-05	24.6	0.1	1.7	1	0	0	1	1	1	1	HD	domain
Lip_prot_lig_C	PF10437.9	gi|390938180|ref|YP_006401918.1|	-	0.052	13.5	0.1	0.56	10.2	0.0	2.4	1	1	2	3	3	3	0	Bacterial	lipoate	protein	ligase	C-terminus
Peptidase_S41_N	PF11918.8	gi|390938180|ref|YP_006401918.1|	-	0.13	12.5	0.1	0.27	11.4	0.1	1.5	1	0	0	1	1	1	0	N-terminal	domain	of	Peptidase_S41	in	eukaryotic	IRBP
BMFP	PF04380.13	gi|390938180|ref|YP_006401918.1|	-	0.18	12.3	0.0	0.47	11.0	0.0	1.7	1	0	0	1	1	1	0	Membrane	fusogenic	activity
Cas_Csa4	PF09703.10	gi|390938181|ref|YP_006401919.1|	-	4.5e-47	161.1	0.4	5.7e-47	160.8	0.4	1.0	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Csa4)
Nexin_C	PF08628.12	gi|390938183|ref|YP_006401921.1|	-	0.044	14.3	0.0	0.059	14.0	0.0	1.4	1	1	0	1	1	1	0	Sorting	nexin	C	terminal
Complex1_LYR	PF05347.15	gi|390938183|ref|YP_006401921.1|	-	0.072	13.2	0.7	1.9	8.6	0.6	2.1	2	0	0	2	2	2	0	Complex	1	protein	(LYR	family)
PIN	PF01850.21	gi|390938184|ref|YP_006401922.1|	-	1.3e-10	41.8	1.7	1.6e-10	41.5	1.7	1.1	1	0	0	1	1	1	1	PIN	domain
ATP_bind_3	PF01171.20	gi|390938185|ref|YP_006401923.1|	-	4.8e-16	59.0	0.0	4.2e-15	56.0	0.0	2.3	2	1	0	2	2	2	1	PP-loop	family
zn-ribbon_14	PF16503.5	gi|390938185|ref|YP_006401923.1|	-	0.00038	19.9	1.6	0.00038	19.9	1.6	2.6	3	0	0	3	3	3	1	Zinc-ribbon
tRNA_Me_trans	PF03054.16	gi|390938185|ref|YP_006401923.1|	-	0.013	14.3	0.0	0.019	13.8	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
NAD_synthase	PF02540.17	gi|390938185|ref|YP_006401923.1|	-	0.024	13.8	0.0	0.3	10.2	0.0	2.1	2	0	0	2	2	2	0	NAD	synthase
PAPS_reduct	PF01507.19	gi|390938185|ref|YP_006401923.1|	-	0.028	14.5	0.0	0.046	13.8	0.0	1.5	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
Flavoprotein	PF02441.19	gi|390938185|ref|YP_006401923.1|	-	0.15	11.8	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	Flavoprotein
E3_UbLigase_RBR	PF18091.1	gi|390938185|ref|YP_006401923.1|	-	0.45	10.7	2.5	2.3	8.4	0.1	2.8	3	0	0	3	3	3	0	E3	Ubiquitin	Ligase	RBR	C-terminal	domain
Ribosomal_S14	PF00253.21	gi|390938185|ref|YP_006401923.1|	-	2.4	8.0	7.1	12	5.7	0.1	3.2	3	0	0	3	3	3	0	Ribosomal	protein	S14p/S29e
Metallophos_3	PF14582.6	gi|390938186|ref|YP_006401924.1|	-	1.7e-14	53.8	0.1	1.2e-10	41.2	0.0	2.1	1	1	1	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
Metallophos_2	PF12850.7	gi|390938186|ref|YP_006401924.1|	-	3e-13	50.3	0.0	5.5e-13	49.4	0.0	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|390938186|ref|YP_006401924.1|	-	6.9e-11	43.0	0.1	1.2e-10	42.3	0.1	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
ABC2_membrane_2	PF12679.7	gi|390938188|ref|YP_006401926.1|	-	1.8e-10	40.6	15.4	1.8e-10	40.6	15.4	1.6	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|390938188|ref|YP_006401926.1|	-	0.011	15.7	13.1	0.011	15.7	13.1	2.4	3	1	0	3	3	3	0	ABC-2	family	transporter	protein
DUF5379	PF17350.2	gi|390938188|ref|YP_006401926.1|	-	0.014	15.7	1.5	0.014	15.7	1.5	3.4	4	0	0	4	4	4	0	Family	of	unknown	function	(DUF5379)
ABC_tran	PF00005.27	gi|390938189|ref|YP_006401927.1|	-	1e-21	77.9	0.0	1.8e-21	77.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938189|ref|YP_006401927.1|	-	7.9e-10	39.0	0.5	1.8e-06	28.0	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
MeaB	PF03308.16	gi|390938189|ref|YP_006401927.1|	-	0.032	13.2	0.1	0.051	12.5	0.1	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_30	PF13604.6	gi|390938189|ref|YP_006401927.1|	-	0.11	12.2	0.0	0.21	11.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
N6_N4_Mtase	PF01555.18	gi|390938190|ref|YP_006401928.1|	-	2.2e-30	106.1	0.1	1.3e-15	57.7	0.0	2.1	2	0	0	2	2	2	2	DNA	methylase
UPF0020	PF01170.18	gi|390938190|ref|YP_006401928.1|	-	5.5e-08	32.7	0.1	2.2e-06	27.5	0.1	2.2	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_11	PF08241.12	gi|390938190|ref|YP_006401928.1|	-	6.4e-07	29.9	0.0	3.3e-05	24.4	0.0	2.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|390938190|ref|YP_006401928.1|	-	7.2e-05	23.4	0.0	0.079	13.7	0.0	3.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|390938190|ref|YP_006401928.1|	-	0.0069	16.2	0.0	1.3	8.8	0.0	2.3	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|390938190|ref|YP_006401928.1|	-	0.038	13.8	0.0	0.24	11.3	0.0	2.0	1	1	0	1	1	1	0	Methyltransferase	domain
Carb_kinase	PF01256.17	gi|390938191|ref|YP_006401929.1|	-	1.9e-47	161.8	0.4	2.8e-44	151.5	0.0	2.1	2	0	0	2	2	2	2	Carbohydrate	kinase
YjeF_N	PF03853.15	gi|390938191|ref|YP_006401929.1|	-	6.7e-41	140.0	0.1	1.2e-40	139.2	0.1	1.5	1	0	0	1	1	1	1	YjeF-related	protein	N-terminus
Phos_pyr_kin	PF08543.12	gi|390938191|ref|YP_006401929.1|	-	0.008	15.6	0.0	0.019	14.4	0.0	1.6	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Tex_YqgF	PF16921.5	gi|390938191|ref|YP_006401929.1|	-	0.021	15.3	0.1	0.078	13.4	0.0	1.9	2	0	0	2	2	2	0	Tex	protein	YqgF-like	domain
TPP_enzyme_M	PF00205.22	gi|390938191|ref|YP_006401929.1|	-	0.086	12.6	0.1	2.3	7.9	0.0	2.8	2	1	1	3	3	3	0	Thiamine	pyrophosphate	enzyme,	central	domain
AIM24	PF01987.17	gi|390938192|ref|YP_006401930.1|	-	1e-53	182.1	0.0	1.2e-53	182.0	0.0	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
SOR_SNZ	PF01680.17	gi|390938193|ref|YP_006401931.1|	-	1.1e-91	306.2	0.1	1.5e-91	305.8	0.1	1.2	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|390938193|ref|YP_006401931.1|	-	8.2e-07	28.6	2.8	1.7e-05	24.3	0.0	2.4	2	1	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.17	gi|390938193|ref|YP_006401931.1|	-	0.00028	20.1	0.3	0.2	10.7	0.0	2.6	2	1	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
NanE	PF04131.14	gi|390938193|ref|YP_006401931.1|	-	0.00084	18.6	0.1	0.53	9.4	0.0	2.4	2	0	0	2	2	2	2	Putative	N-acetylmannosamine-6-phosphate	epimerase
His_biosynth	PF00977.21	gi|390938193|ref|YP_006401931.1|	-	0.0022	17.5	0.1	0.63	9.5	0.0	3.0	2	1	0	2	2	2	1	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|390938193|ref|YP_006401931.1|	-	0.014	14.8	0.5	0.024	14.0	0.1	1.6	2	0	0	2	2	2	0	Nitronate	monooxygenase
IGPS	PF00218.21	gi|390938193|ref|YP_006401931.1|	-	0.035	13.3	0.0	0.58	9.3	0.0	2.4	2	0	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
OMPdecase	PF00215.24	gi|390938193|ref|YP_006401931.1|	-	0.075	12.6	0.0	1.2	8.7	0.0	2.2	2	0	0	2	2	2	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
Trp_syntA	PF00290.20	gi|390938193|ref|YP_006401931.1|	-	0.078	11.8	0.0	0.17	10.7	0.0	1.5	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
DUF2464	PF10240.9	gi|390938193|ref|YP_006401931.1|	-	0.12	11.9	0.0	0.17	11.4	0.0	1.2	1	0	0	1	1	1	0	Multivesicular	body	subunit	12
SNO	PF01174.19	gi|390938194|ref|YP_006401932.1|	-	3.7e-48	163.9	0.0	4.2e-48	163.7	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|390938194|ref|YP_006401932.1|	-	4.2e-10	39.6	0.0	4.6e-10	39.4	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|390938194|ref|YP_006401932.1|	-	1.4e-07	31.5	0.0	2.6e-07	30.6	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DJ-1_PfpI	PF01965.24	gi|390938194|ref|YP_006401932.1|	-	8.1e-06	25.7	0.0	1.2e-05	25.2	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
Peptidase_S51	PF03575.17	gi|390938194|ref|YP_006401932.1|	-	1.9e-05	24.4	0.0	2.6e-05	24.0	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	S51
ThiJ_like	PF17124.5	gi|390938194|ref|YP_006401932.1|	-	0.00046	19.9	0.0	0.00064	19.5	0.0	1.2	1	0	0	1	1	1	1	ThiJ/PfpI	family-like
Peptidase_C26	PF07722.13	gi|390938194|ref|YP_006401932.1|	-	0.11	12.2	0.2	0.97	9.1	0.2	2.4	1	1	0	1	1	1	0	Peptidase	C26
PALP	PF00291.25	gi|390938195|ref|YP_006401933.1|	-	9.8e-15	54.7	0.2	4.3e-07	29.6	0.1	3.0	1	1	0	2	2	2	2	Pyridoxal-phosphate	dependent	enzyme
TrmB	PF01978.19	gi|390938195|ref|YP_006401933.1|	-	0.003	17.4	0.3	0.0079	16.1	0.3	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
PadR	PF03551.14	gi|390938195|ref|YP_006401933.1|	-	0.003	17.5	0.1	0.0065	16.4	0.1	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_11	PF08279.12	gi|390938195|ref|YP_006401933.1|	-	0.0043	17.0	0.2	0.016	15.2	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
AdoHcyase_NAD	PF00670.21	gi|390938195|ref|YP_006401933.1|	-	0.054	13.6	0.1	0.094	12.8	0.1	1.3	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Ribosomal_L12	PF00542.19	gi|390938195|ref|YP_006401933.1|	-	0.16	12.3	0.9	1.7	9.1	0.1	2.4	2	0	0	2	2	2	0	Ribosomal	protein	L7/L12	C-terminal	domain
GMP_synt_C	PF00958.22	gi|390938196|ref|YP_006401934.1|	-	8.6e-33	112.3	0.5	2.7e-32	110.7	0.1	2.0	2	0	0	2	2	2	1	GMP	synthase	C	terminal	domain
GATase	PF00117.28	gi|390938196|ref|YP_006401934.1|	-	2.7e-31	108.8	0.0	5.1e-31	107.9	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
NAD_synthase	PF02540.17	gi|390938196|ref|YP_006401934.1|	-	1.7e-11	43.7	0.1	2.9e-05	23.3	0.0	2.5	3	0	0	3	3	3	2	NAD	synthase
Peptidase_C26	PF07722.13	gi|390938196|ref|YP_006401934.1|	-	1.6e-10	41.1	0.0	5.6e-10	39.3	0.0	2.0	1	1	0	1	1	1	1	Peptidase	C26
ATP_bind_3	PF01171.20	gi|390938196|ref|YP_006401934.1|	-	0.00034	20.4	0.0	0.00069	19.4	0.0	1.5	1	1	0	1	1	1	1	PP-loop	family
QueC	PF06508.13	gi|390938196|ref|YP_006401934.1|	-	0.0013	18.2	0.0	0.019	14.5	0.0	2.1	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
GATase_3	PF07685.14	gi|390938196|ref|YP_006401934.1|	-	0.0014	18.3	0.0	0.0031	17.1	0.0	1.5	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|390938196|ref|YP_006401934.1|	-	0.006	16.4	0.0	0.018	14.9	0.0	1.8	2	0	0	2	2	2	1	DJ-1/PfpI	family
Pribosyltran	PF00156.27	gi|390938197|ref|YP_006401935.1|	-	2e-23	82.6	0.0	3e-23	82.1	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|390938197|ref|YP_006401935.1|	-	0.0051	16.3	0.0	0.007	15.8	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
OMPdecase	PF00215.24	gi|390938198|ref|YP_006401936.1|	-	4.1e-26	92.0	0.0	5.2e-26	91.6	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
ThiC_Rad_SAM	PF01964.18	gi|390938198|ref|YP_006401936.1|	-	0.041	12.7	0.1	0.056	12.2	0.1	1.1	1	0	0	1	1	1	0	Radical	SAM	ThiC	family
Pribosyltran	PF00156.27	gi|390938199|ref|YP_006401937.1|	-	4.5e-18	65.3	1.4	6.3e-18	64.8	1.4	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|390938199|ref|YP_006401937.1|	-	0.012	15.1	0.1	0.017	14.6	0.1	1.3	1	1	0	1	1	1	0	Uracil	phosphoribosyltransferase
NMT	PF01233.19	gi|390938199|ref|YP_006401937.1|	-	0.02	14.7	0.1	0.076	12.8	0.0	1.8	2	0	0	2	2	2	0	Myristoyl-CoA:protein	N-myristoyltransferase,	N-terminal	domain
DHODB_Fe-S_bind	PF10418.9	gi|390938200|ref|YP_006401938.1|	-	8.4e-09	35.1	3.2	8.4e-09	35.1	3.2	2.3	3	0	0	3	3	3	1	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
NAD_binding_1	PF00175.21	gi|390938200|ref|YP_006401938.1|	-	2.8e-05	24.7	0.0	3.9e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
NAD_binding_6	PF08030.12	gi|390938200|ref|YP_006401938.1|	-	0.019	15.1	0.0	0.039	14.1	0.0	1.6	1	0	0	1	1	1	0	Ferric	reductase	NAD	binding	domain
DHO_dh	PF01180.21	gi|390938201|ref|YP_006401939.1|	-	5.2e-53	180.2	0.0	5.9e-53	180.0	0.0	1.0	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
Dus	PF01207.17	gi|390938201|ref|YP_006401939.1|	-	1.1e-08	34.6	0.3	4e-08	32.7	0.0	1.7	2	0	0	2	2	2	1	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.21	gi|390938201|ref|YP_006401939.1|	-	0.00028	20.4	0.8	0.002	17.6	0.0	2.6	4	0	0	4	4	4	1	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|390938201|ref|YP_006401939.1|	-	0.0045	16.4	2.2	0.026	13.9	0.2	2.0	1	1	0	2	2	2	1	Nitronate	monooxygenase
IMPDH	PF00478.25	gi|390938201|ref|YP_006401939.1|	-	0.071	12.1	0.4	0.14	11.2	0.0	1.7	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
FMN_dh	PF01070.18	gi|390938201|ref|YP_006401939.1|	-	0.17	10.9	2.1	0.3	10.1	1.4	1.8	2	1	0	2	2	2	0	FMN-dependent	dehydrogenase
MarR	PF01047.22	gi|390938202|ref|YP_006401940.1|	-	0.00042	20.2	0.1	0.0012	18.7	0.1	1.8	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|390938202|ref|YP_006401940.1|	-	0.0009	19.3	0.0	0.0021	18.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|390938202|ref|YP_006401940.1|	-	0.0019	18.1	0.0	0.0047	16.9	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|390938202|ref|YP_006401940.1|	-	0.0021	17.9	0.6	0.013	15.3	0.3	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|390938202|ref|YP_006401940.1|	-	0.0086	16.0	0.4	0.037	14.0	0.4	2.1	2	0	0	2	2	2	1	HTH	domain
HxlR	PF01638.17	gi|390938202|ref|YP_006401940.1|	-	0.013	15.3	0.2	0.034	14.0	0.2	1.6	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_CodY	PF08222.11	gi|390938202|ref|YP_006401940.1|	-	0.016	14.8	0.1	0.12	12.0	0.0	2.3	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
TrmB	PF01978.19	gi|390938202|ref|YP_006401940.1|	-	0.032	14.1	0.2	0.089	12.7	0.1	1.8	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|390938202|ref|YP_006401940.1|	-	0.037	13.9	0.0	0.081	12.8	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DUF1098	PF06497.11	gi|390938202|ref|YP_006401940.1|	-	0.064	13.7	0.4	1.7	9.1	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1098)
HTH_27	PF13463.6	gi|390938202|ref|YP_006401940.1|	-	0.1	13.1	0.1	0.2	12.1	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DIM	PF08194.12	gi|390938202|ref|YP_006401940.1|	-	0.44	10.8	1.6	0.97	9.7	1.6	1.6	1	0	0	1	1	1	0	DIM	protein
HTH_24	PF13412.6	gi|390938202|ref|YP_006401940.1|	-	2.5	7.7	5.9	0.27	10.8	0.2	2.4	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
Arch_flagellin	PF01917.16	gi|390938205|ref|YP_006401943.1|	-	2.3e-31	109.2	2.3	3e-31	108.8	2.3	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
Claudin_2	PF13903.6	gi|390938205|ref|YP_006401943.1|	-	0.041	13.6	0.6	0.2	11.4	0.2	1.8	2	0	0	2	2	2	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF3365	PF11845.8	gi|390938205|ref|YP_006401943.1|	-	0.074	13.4	0.0	0.094	13.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3365)
DUF3149	PF11346.8	gi|390938206|ref|YP_006401944.1|	-	0.0069	16.0	1.2	0.0069	16.0	1.2	2.1	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF3149)
DUF1700	PF08006.11	gi|390938206|ref|YP_006401944.1|	-	0.94	9.0	5.8	1.1	8.8	5.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
DUF3270	PF11674.8	gi|390938206|ref|YP_006401944.1|	-	1.4	9.1	6.7	2.1	8.6	6.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3270)
DED	PF01335.21	gi|390938207|ref|YP_006401945.1|	-	0.11	12.9	3.4	1.1	9.6	0.0	2.7	2	1	1	3	3	3	0	Death	effector	domain
CtsR_C	PF17727.1	gi|390938207|ref|YP_006401945.1|	-	0.43	10.8	2.6	7	6.9	2.6	2.3	1	1	0	1	1	1	0	CtsR	C-terminal	dimerization	domain
Arch_flagellin	PF01917.16	gi|390938208|ref|YP_006401946.1|	-	1.6e-10	41.4	7.3	1.8e-10	41.3	7.3	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
Pilin_N	PF07790.11	gi|390938208|ref|YP_006401946.1|	-	4	8.4	9.1	18	6.3	8.9	2.1	1	1	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
HCBP_related	PF06594.11	gi|390938209|ref|YP_006401947.1|	-	0.027	14.4	0.1	0.1	12.5	0.1	2.0	1	0	0	1	1	1	0	Haemolysin-type	calcium	binding	protein	related	domain
TadE	PF07811.12	gi|390938209|ref|YP_006401947.1|	-	0.081	13.2	1.4	0.17	12.2	1.4	1.5	1	0	0	1	1	1	0	TadE-like	protein
PspB	PF06667.12	gi|390938209|ref|YP_006401947.1|	-	0.21	11.6	0.6	0.42	10.7	0.6	1.4	1	0	0	1	1	1	0	Phage	shock	protein	B
ATPase	PF06745.13	gi|390938210|ref|YP_006401948.1|	-	2.5e-24	85.9	0.4	2.9e-24	85.7	0.4	1.0	1	0	0	1	1	1	1	KaiC
PAXNEB	PF05625.11	gi|390938210|ref|YP_006401948.1|	-	3.7e-06	26.3	0.2	0.00012	21.4	0.3	2.0	2	0	0	2	2	2	1	PAXNEB	protein
AAA_25	PF13481.6	gi|390938210|ref|YP_006401948.1|	-	5.4e-06	26.1	0.0	8e-06	25.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|390938210|ref|YP_006401948.1|	-	2.9e-05	24.4	0.0	5.1e-05	23.6	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|390938210|ref|YP_006401948.1|	-	0.00016	21.0	0.9	0.00022	20.6	0.3	1.5	2	0	0	2	2	2	1	Rad51
RecA	PF00154.21	gi|390938210|ref|YP_006401948.1|	-	0.0015	18.0	0.3	0.0059	16.1	0.1	1.9	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
AAA_30	PF13604.6	gi|390938210|ref|YP_006401948.1|	-	0.0016	18.2	0.0	0.0024	17.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|390938210|ref|YP_006401948.1|	-	0.0018	18.2	0.2	0.0034	17.3	0.2	1.7	1	1	0	1	1	1	1	NACHT	domain
AAA_24	PF13479.6	gi|390938210|ref|YP_006401948.1|	-	0.0019	18.0	0.5	0.0056	16.4	0.4	1.8	1	1	0	1	1	1	1	AAA	domain
DAP3	PF10236.9	gi|390938210|ref|YP_006401948.1|	-	0.002	17.3	0.4	0.0036	16.5	0.4	1.3	1	0	0	1	1	1	1	Mitochondrial	ribosomal	death-associated	protein	3
DnaB_C	PF03796.15	gi|390938210|ref|YP_006401948.1|	-	0.0021	17.4	0.0	0.003	17.0	0.0	1.3	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_16	PF13191.6	gi|390938210|ref|YP_006401948.1|	-	0.0024	18.3	0.1	0.0041	17.5	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
cobW	PF02492.19	gi|390938210|ref|YP_006401948.1|	-	0.012	15.3	0.6	0.022	14.3	0.6	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
NTPase_1	PF03266.15	gi|390938210|ref|YP_006401948.1|	-	0.019	14.9	3.2	0.055	13.4	2.5	2.1	1	1	1	2	2	2	0	NTPase
DUF2075	PF09848.9	gi|390938210|ref|YP_006401948.1|	-	0.032	13.5	0.4	0.053	12.8	0.4	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_14	PF13173.6	gi|390938210|ref|YP_006401948.1|	-	0.047	13.7	0.4	0.42	10.7	0.1	2.3	2	1	1	3	3	3	0	AAA	domain
DUF815	PF05673.13	gi|390938210|ref|YP_006401948.1|	-	0.055	12.6	0.2	0.24	10.5	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
AAA_7	PF12775.7	gi|390938210|ref|YP_006401948.1|	-	0.058	12.9	0.0	0.12	11.8	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
TsaE	PF02367.17	gi|390938210|ref|YP_006401948.1|	-	0.063	13.3	0.1	0.11	12.4	0.1	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
TrwB_AAD_bind	PF10412.9	gi|390938210|ref|YP_006401948.1|	-	0.063	12.2	0.4	0.13	11.2	0.3	1.5	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
MobB	PF03205.14	gi|390938210|ref|YP_006401948.1|	-	0.073	13.0	0.9	0.12	12.3	0.4	1.5	2	0	0	2	2	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Elong_Iki1	PF10483.9	gi|390938210|ref|YP_006401948.1|	-	0.1	12.1	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	Elongator	subunit	Iki1
Roc	PF08477.13	gi|390938210|ref|YP_006401948.1|	-	0.15	12.3	0.1	0.27	11.5	0.1	1.4	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
T2SSF	PF00482.23	gi|390938211|ref|YP_006401949.1|	-	4.4e-13	49.3	0.3	1e-08	35.2	0.0	3.3	4	0	0	4	4	4	2	Type	II	secretion	system	(T2SS),	protein	F
Nitroreductase	PF00881.24	gi|390938212|ref|YP_006401950.1|	-	2.7e-26	92.6	0.0	3.1e-26	92.4	0.0	1.0	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|390938212|ref|YP_006401950.1|	-	0.032	13.8	0.0	3.1	7.3	0.0	2.1	2	0	0	2	2	2	0	Putative	TM	nitroreductase
YwcE	PF17368.2	gi|390938214|ref|YP_006401952.1|	-	0.3	11.8	7.2	8.7	7.1	6.6	2.0	1	1	0	1	1	1	0	Spore	morphogenesis	and	germination	YwcE
TMEM100	PF16311.5	gi|390938214|ref|YP_006401952.1|	-	0.42	10.2	4.0	0.3	10.7	0.3	1.9	1	1	1	2	2	2	0	Transmembrane	protein	100
PsbW	PF07123.12	gi|390938214|ref|YP_006401952.1|	-	0.57	10.2	3.2	0.87	9.6	3.2	1.5	1	1	0	1	1	1	0	Photosystem	II	reaction	centre	W	protein	(PsbW)
TPP_enzyme_C	PF02775.21	gi|390938215|ref|YP_006401953.1|	-	4.1e-30	104.6	0.1	6.7e-30	103.9	0.1	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|390938215|ref|YP_006401953.1|	-	3e-17	62.5	0.0	5.6e-17	61.6	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
Type_III_YscX	PF09474.10	gi|390938215|ref|YP_006401953.1|	-	0.15	12.4	0.0	0.23	11.8	0.0	1.2	1	0	0	1	1	1	0	Type	III	secretion	system	YscX	(type_III_YscX)
POR_N	PF01855.19	gi|390938216|ref|YP_006401954.1|	-	7e-60	202.6	0.0	1e-59	202.1	0.0	1.2	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|390938216|ref|YP_006401954.1|	-	5.6e-30	104.7	0.0	1.2e-29	103.6	0.0	1.5	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
PFOR_II	PF17147.4	gi|390938216|ref|YP_006401954.1|	-	1.5e-12	47.7	0.0	4e-12	46.3	0.0	1.8	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|390938216|ref|YP_006401954.1|	-	2.3e-06	27.5	0.0	6e-06	26.1	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|390938216|ref|YP_006401954.1|	-	0.005	16.5	0.0	0.011	15.4	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
zf-met	PF12874.7	gi|390938217|ref|YP_006401955.1|	-	0.0025	18.1	0.1	0.0053	17.1	0.1	1.6	1	0	0	1	1	1	1	Zinc-finger	of	C2H2	type
HIPIP	PF01355.17	gi|390938217|ref|YP_006401955.1|	-	0.031	14.6	0.6	0.059	13.7	0.1	1.7	2	0	0	2	2	2	0	High	potential	iron-sulfur	protein
zf-C2H2	PF00096.26	gi|390938217|ref|YP_006401955.1|	-	0.067	13.7	0.3	0.067	13.7	0.3	2.4	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-C2H2_2	PF12756.7	gi|390938217|ref|YP_006401955.1|	-	0.098	13.0	0.0	0.11	12.8	0.0	1.2	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
zf-C2H2_jaz	PF12171.8	gi|390938217|ref|YP_006401955.1|	-	0.12	12.7	0.1	0.26	11.6	0.1	1.6	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
zf_C2H2_ZHX	PF18387.1	gi|390938217|ref|YP_006401955.1|	-	0.15	11.7	1.7	0.26	10.9	0.2	1.9	2	0	0	2	2	2	0	Zinc-fingers	and	homeoboxes	C2H2	finger	domain
Fer4_15	PF13459.6	gi|390938218|ref|YP_006401956.1|	-	1.8e-14	54.2	1.2	2.2e-14	53.9	1.2	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|390938218|ref|YP_006401956.1|	-	3e-13	50.1	1.1	3.7e-13	49.8	1.1	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4	PF00037.27	gi|390938218|ref|YP_006401956.1|	-	0.00031	20.4	3.1	0.12	12.2	0.3	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|390938218|ref|YP_006401956.1|	-	0.021	14.9	4.2	0.27	11.4	4.2	2.1	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|390938218|ref|YP_006401956.1|	-	0.028	14.6	2.6	0.38	10.9	3.2	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|390938218|ref|YP_006401956.1|	-	0.057	13.5	5.0	0.21	11.7	0.6	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|390938218|ref|YP_006401956.1|	-	0.1	12.8	0.5	0.1	12.8	0.5	2.1	2	0	0	2	2	2	0	4Fe-4S	binding	domain
YHS	PF04945.13	gi|390938219|ref|YP_006401957.1|	-	2.2e-21	75.7	4.5	2.4e-21	75.6	4.5	1.0	1	0	0	1	1	1	1	YHS	domain
Ribosomal_L24e	PF01246.20	gi|390938219|ref|YP_006401957.1|	-	0.00035	20.7	0.8	0.00041	20.5	0.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.14	gi|390938219|ref|YP_006401957.1|	-	0.0013	18.7	2.5	0.0019	18.1	2.5	1.4	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
FAP206	PF12018.8	gi|390938219|ref|YP_006401957.1|	-	0.0025	17.4	0.1	0.0027	17.3	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function
Arc_trans_TRASH	PF08394.10	gi|390938219|ref|YP_006401957.1|	-	0.0071	16.7	4.0	0.0099	16.2	4.0	1.4	1	1	0	1	1	1	1	Archaeal	TRASH	domain
DUF2116	PF09889.9	gi|390938219|ref|YP_006401957.1|	-	0.13	12.2	0.8	0.38	10.8	0.4	1.8	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
E1-E2_ATPase	PF00122.20	gi|390938220|ref|YP_006401958.1|	-	5.7e-49	166.1	0.4	2.3e-48	164.1	0.9	1.8	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|390938220|ref|YP_006401958.1|	-	4.3e-39	135.0	0.1	1.6e-38	133.2	0.0	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|390938220|ref|YP_006401958.1|	-	4.4e-14	52.7	0.2	1.2e-11	44.9	0.1	2.9	2	0	0	2	2	2	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|390938220|ref|YP_006401958.1|	-	3.8e-06	26.8	0.0	0.0035	17.1	0.0	2.5	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|390938220|ref|YP_006401958.1|	-	0.0013	19.1	0.0	0.0037	17.7	0.0	1.8	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
TusA	PF01206.17	gi|390938220|ref|YP_006401958.1|	-	0.0033	17.2	0.0	0.037	13.9	0.0	2.7	3	0	0	3	3	3	1	Sulfurtransferase	TusA
HAD_2	PF13419.6	gi|390938220|ref|YP_006401958.1|	-	0.089	12.9	0.1	0.59	10.2	0.1	2.3	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
DUF2070	PF09843.9	gi|390938221|ref|YP_006401959.1|	-	1.8	6.7	14.5	2.2	6.4	14.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Pyr_redox_2	PF07992.14	gi|390938222|ref|YP_006401960.1|	-	3.5e-13	49.4	0.1	4.4e-05	22.9	0.1	3.2	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|390938222|ref|YP_006401960.1|	-	8.1e-12	44.5	0.0	3.2e-06	26.1	0.0	2.3	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|390938222|ref|YP_006401960.1|	-	7.4e-10	38.6	0.2	0.00074	18.9	0.0	3.2	4	0	0	4	4	4	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|390938222|ref|YP_006401960.1|	-	3.3e-09	36.8	0.1	8.5e-06	25.6	0.1	2.4	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|390938222|ref|YP_006401960.1|	-	3.6e-08	32.9	0.3	0.0019	17.3	0.0	2.9	3	0	0	3	3	3	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|390938222|ref|YP_006401960.1|	-	2.1e-06	27.1	0.0	0.0001	21.6	0.0	2.3	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|390938222|ref|YP_006401960.1|	-	6.6e-06	26.3	0.1	2.3e-05	24.5	0.1	2.0	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|390938222|ref|YP_006401960.1|	-	2.9e-05	23.4	0.0	0.00045	19.5	0.0	2.3	2	0	0	2	2	2	1	Thi4	family
FAD_binding_3	PF01494.19	gi|390938222|ref|YP_006401960.1|	-	0.00024	20.4	0.0	0.00049	19.5	0.0	1.5	1	0	0	1	1	1	1	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|390938222|ref|YP_006401960.1|	-	0.00036	19.7	0.0	0.00053	19.2	0.0	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|390938222|ref|YP_006401960.1|	-	0.00068	20.1	0.1	1.5	9.4	0.0	2.8	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|390938222|ref|YP_006401960.1|	-	0.0012	18.9	0.0	0.11	12.5	0.0	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
FAD_oxidored	PF12831.7	gi|390938222|ref|YP_006401960.1|	-	0.006	16.0	0.0	0.039	13.3	0.1	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|390938222|ref|YP_006401960.1|	-	0.0068	15.3	0.0	0.0099	14.8	0.0	1.2	1	0	0	1	1	1	1	Tryptophan	halogenase
Amino_oxidase	PF01593.24	gi|390938222|ref|YP_006401960.1|	-	0.015	14.6	0.1	0.27	10.5	0.0	2.4	3	0	0	3	3	3	0	Flavin	containing	amine	oxidoreductase
MCRA	PF06100.11	gi|390938222|ref|YP_006401960.1|	-	0.24	10.1	0.1	0.44	9.3	0.0	1.4	2	0	0	2	2	2	0	MCRA	family
Adenylsucc_synt	PF00709.21	gi|390938223|ref|YP_006401961.1|	-	2.1e-67	227.9	1.0	9.2e-34	117.1	0.1	3.0	1	1	2	3	3	3	3	Adenylosuccinate	synthetase
Dak1_2	PF13684.6	gi|390938223|ref|YP_006401961.1|	-	0.16	11.0	0.0	0.9	8.6	0.0	1.9	2	0	0	2	2	2	0	Dihydroxyacetone	kinase	family
SAICAR_synt	PF01259.18	gi|390938224|ref|YP_006401962.1|	-	3.1e-52	177.7	0.0	3.8e-52	177.4	0.0	1.0	1	0	0	1	1	1	1	SAICAR	synthetase
PurS	PF02700.14	gi|390938225|ref|YP_006401963.1|	-	9.9e-22	76.9	0.2	1.1e-21	76.8	0.2	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
GATase_5	PF13507.6	gi|390938226|ref|YP_006401964.1|	-	1.7e-46	158.4	0.0	2.9e-46	157.7	0.0	1.3	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|390938226|ref|YP_006401964.1|	-	2.9e-09	37.0	0.0	3.1e-09	36.9	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DJ-1_PfpI	PF01965.24	gi|390938226|ref|YP_006401964.1|	-	6.4e-08	32.6	0.0	9e-08	32.1	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|390938226|ref|YP_006401964.1|	-	1.7e-07	31.1	0.0	2.6e-07	30.4	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_C26	PF07722.13	gi|390938226|ref|YP_006401964.1|	-	0.0038	17.0	0.0	0.0053	16.5	0.0	1.2	1	0	0	1	1	1	1	Peptidase	C26
SNO	PF01174.19	gi|390938226|ref|YP_006401964.1|	-	0.0072	16.2	0.0	0.014	15.2	0.0	1.4	2	0	0	2	2	2	1	SNO	glutamine	amidotransferase	family
AIRS_C	PF02769.22	gi|390938227|ref|YP_006401965.1|	-	2.1e-45	154.7	0.1	1e-23	84.2	0.0	2.5	3	0	0	3	3	3	2	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|390938227|ref|YP_006401965.1|	-	6.7e-42	142.1	0.0	5e-22	78.4	0.0	2.3	2	0	0	2	2	2	2	AIR	synthase	related	protein,	N-terminal	domain
FGAR-AT_linker	PF18072.1	gi|390938227|ref|YP_006401965.1|	-	1.1e-11	45.0	0.4	2.3e-11	44.0	0.4	1.6	1	0	0	1	1	1	1	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
Tegument_dsDNA	PF12818.7	gi|390938227|ref|YP_006401965.1|	-	0.015	14.5	0.0	0.81	8.8	0.0	2.3	2	0	0	2	2	2	0	dsDNA	viral	tegument	protein
GATase_6	PF13522.6	gi|390938228|ref|YP_006401966.1|	-	1e-12	48.4	0.0	1.8e-12	47.6	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|390938228|ref|YP_006401966.1|	-	4.2e-12	46.1	0.0	7e-12	45.3	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
Pribosyltran	PF00156.27	gi|390938228|ref|YP_006401966.1|	-	2.2e-06	27.3	0.1	4.3e-06	26.3	0.1	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
AcylCoA_dehyd_C	PF12186.8	gi|390938228|ref|YP_006401966.1|	-	0.18	12.0	0.0	0.32	11.2	0.0	1.3	1	0	0	1	1	1	0	Acyl-CoA	dehydrogenase	C	terminal
Pribosyltran	PF00156.27	gi|390938229|ref|YP_006401967.1|	-	1.1e-13	51.0	0.2	2e-13	50.1	0.2	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|390938229|ref|YP_006401967.1|	-	0.00082	18.9	0.0	0.0016	18.0	0.0	1.4	1	1	0	1	1	1	1	Phosphoribosyl	transferase
GARS_A	PF01071.19	gi|390938230|ref|YP_006401968.1|	-	1.3e-37	129.5	0.0	1.8e-37	129.0	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.15	gi|390938230|ref|YP_006401968.1|	-	2.2e-21	76.5	0.0	4.3e-21	75.5	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.16	gi|390938230|ref|YP_006401968.1|	-	2.2e-07	31.1	0.1	7.9e-07	29.3	0.0	2.0	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATPgrasp_ST	PF14397.6	gi|390938230|ref|YP_006401968.1|	-	0.0011	18.3	0.0	0.0017	17.7	0.0	1.1	1	0	0	1	1	1	1	Sugar-transfer	associated	ATP-grasp
ATP-grasp_4	PF13535.6	gi|390938230|ref|YP_006401968.1|	-	0.014	15.0	0.0	0.022	14.3	0.0	1.3	1	0	0	1	1	1	0	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|390938230|ref|YP_006401968.1|	-	0.023	14.1	0.0	0.042	13.2	0.0	1.4	1	0	0	1	1	1	0	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|390938230|ref|YP_006401968.1|	-	0.042	13.9	0.0	0.14	12.2	0.0	1.9	1	1	0	1	1	1	0	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|390938230|ref|YP_006401968.1|	-	0.17	11.4	0.0	0.29	10.6	0.0	1.3	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.22	gi|390938231|ref|YP_006401969.1|	-	6.6e-40	136.5	0.0	1e-39	135.9	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|390938231|ref|YP_006401969.1|	-	4.9e-10	39.3	0.0	8.2e-10	38.6	0.0	1.3	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
CPSase_L_D2	PF02786.17	gi|390938231|ref|YP_006401969.1|	-	6.7e-08	32.3	0.1	1.9e-07	30.8	0.0	1.8	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_ST	PF14397.6	gi|390938231|ref|YP_006401969.1|	-	0.00019	20.8	0.0	0.0039	16.5	0.0	2.2	2	0	0	2	2	2	1	Sugar-transfer	associated	ATP-grasp
Epimerase	PF01370.21	gi|390938231|ref|YP_006401969.1|	-	0.00036	20.1	0.0	0.00053	19.5	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
2-Hacid_dh_C	PF02826.19	gi|390938231|ref|YP_006401969.1|	-	0.0017	17.7	0.0	0.0036	16.7	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ATP-grasp_5	PF13549.6	gi|390938231|ref|YP_006401969.1|	-	0.0019	17.7	0.0	0.0034	16.9	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|390938231|ref|YP_006401969.1|	-	0.0022	17.8	0.0	0.0045	16.8	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_4	PF13535.6	gi|390938231|ref|YP_006401969.1|	-	0.0058	16.2	0.0	0.016	14.8	0.0	1.8	1	1	0	1	1	1	1	ATP-grasp	domain
Pyr_redox	PF00070.27	gi|390938231|ref|YP_006401969.1|	-	0.0072	16.9	0.3	0.33	11.5	0.1	2.6	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
LAL_C2	PF18603.1	gi|390938231|ref|YP_006401969.1|	-	0.0097	16.1	0.3	0.5	10.5	0.4	3.1	2	1	0	2	2	2	1	L-amino	acid	ligase	C-terminal	domain	2
RmlD_sub_bind	PF04321.17	gi|390938231|ref|YP_006401969.1|	-	0.021	13.9	0.1	0.036	13.2	0.1	1.4	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
Pyr_redox_2	PF07992.14	gi|390938231|ref|YP_006401969.1|	-	0.034	13.4	0.2	0.097	11.9	0.2	1.8	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
ATPgrasp_N	PF18130.1	gi|390938231|ref|YP_006401969.1|	-	0.13	12.8	0.0	0.72	10.5	0.1	2.1	2	0	0	2	2	2	0	ATP-grasp	N-terminal	domain
AIRC	PF00731.20	gi|390938232|ref|YP_006401970.1|	-	1.3e-50	170.8	0.1	1.5e-50	170.6	0.1	1.0	1	0	0	1	1	1	1	AIR	carboxylase
THF_DHG_CYH_C	PF02882.19	gi|390938232|ref|YP_006401970.1|	-	0.04	13.3	0.1	0.057	12.7	0.0	1.3	1	1	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
AIRS_C	PF02769.22	gi|390938233|ref|YP_006401971.1|	-	3.2e-23	82.6	0.0	5.2e-23	81.9	0.0	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|390938233|ref|YP_006401971.1|	-	3.1e-16	59.8	1.0	7.5e-16	58.6	0.3	1.9	3	0	0	3	3	3	1	AIR	synthase	related	protein,	N-terminal	domain
DUF1297	PF06973.12	gi|390938234|ref|YP_006401972.1|	-	4e-80	267.8	0.2	5.7e-80	267.3	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.12	gi|390938234|ref|YP_006401972.1|	-	5.3e-47	158.8	0.1	1e-46	157.9	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1246)
Lyase_1	PF00206.20	gi|390938235|ref|YP_006401973.1|	-	7.6e-40	137.2	0.0	1e-39	136.8	0.0	1.2	1	0	0	1	1	1	1	Lyase
ADSL_C	PF10397.9	gi|390938235|ref|YP_006401973.1|	-	2.7e-14	53.5	0.0	6e-14	52.4	0.0	1.6	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminus
ASL_C	PF08328.11	gi|390938235|ref|YP_006401973.1|	-	1.9e-06	28.0	0.2	2.3e-05	24.5	0.2	2.4	2	0	0	2	2	2	1	Adenylosuccinate	lyase	C-terminal
DUF1297	PF06973.12	gi|390938236|ref|YP_006401974.1|	-	2.1e-74	249.2	0.0	2.7e-74	248.8	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.12	gi|390938236|ref|YP_006401974.1|	-	9e-44	148.4	0.0	1.3e-43	147.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
CPSase_L_D2	PF02786.17	gi|390938236|ref|YP_006401974.1|	-	0.16	11.4	0.0	0.26	10.8	0.0	1.2	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Pribosyltran	PF00156.27	gi|390938237|ref|YP_006401975.1|	-	1.7e-13	50.4	0.2	2.7e-13	49.7	0.2	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|390938237|ref|YP_006401975.1|	-	0.00014	21.3	0.0	0.00021	20.8	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|390938237|ref|YP_006401975.1|	-	0.0049	16.4	0.0	0.0073	15.8	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase
POR	PF01558.18	gi|390938238|ref|YP_006401976.1|	-	3e-26	92.6	0.0	3.6e-26	92.3	0.0	1.1	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_C	PF02775.21	gi|390938239|ref|YP_006401977.1|	-	6.1e-30	104.0	1.1	1.5e-29	102.8	0.2	1.8	1	1	1	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|390938240|ref|YP_006401978.1|	-	1.3e-66	224.6	0.2	1.8e-66	224.2	0.2	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|390938240|ref|YP_006401978.1|	-	9.9e-16	57.9	0.1	1.9e-15	57.0	0.1	1.4	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|390938240|ref|YP_006401978.1|	-	3.2e-10	39.9	0.0	7e-10	38.9	0.0	1.5	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|390938240|ref|YP_006401978.1|	-	0.007	16.0	0.1	0.013	15.2	0.1	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_7	PF12838.7	gi|390938241|ref|YP_006401979.1|	-	3e-12	46.9	32.1	7.9e-08	32.8	11.2	1.7	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|390938241|ref|YP_006401979.1|	-	1.9e-11	43.3	14.0	6e-06	25.9	4.5	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|390938241|ref|YP_006401979.1|	-	7.5e-10	38.8	17.3	1.3e-07	31.7	8.0	1.5	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|390938241|ref|YP_006401979.1|	-	8e-10	38.4	13.6	3.5e-05	23.7	3.3	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|390938241|ref|YP_006401979.1|	-	9.9e-10	37.9	13.2	9.9e-06	25.4	3.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|390938241|ref|YP_006401979.1|	-	4.5e-09	36.3	6.9	8.5e-05	22.6	0.7	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|390938241|ref|YP_006401979.1|	-	1e-07	32.3	5.2	0.0035	17.8	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|390938241|ref|YP_006401979.1|	-	1.4e-07	31.5	8.7	2e-07	31.0	8.7	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|390938241|ref|YP_006401979.1|	-	1.9e-07	31.0	11.7	0.0011	19.2	1.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|390938241|ref|YP_006401979.1|	-	3.7e-06	27.8	12.2	0.00029	21.7	2.6	2.2	1	1	2	3	3	3	3	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|390938241|ref|YP_006401979.1|	-	1.3e-05	25.6	11.7	0.00035	21.0	12.2	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|390938241|ref|YP_006401979.1|	-	0.0034	18.2	14.3	0.2	12.7	2.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|390938241|ref|YP_006401979.1|	-	0.0054	17.3	11.4	0.1	13.1	1.2	2.2	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|390938241|ref|YP_006401979.1|	-	0.059	13.6	10.7	4.3	7.6	11.0	2.1	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|390938241|ref|YP_006401979.1|	-	0.067	14.0	11.6	0.68	10.8	0.6	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|390938241|ref|YP_006401979.1|	-	0.074	13.8	7.9	1.9	9.3	0.8	2.2	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
HycI	PF01750.18	gi|390938242|ref|YP_006401980.1|	-	2.3e-13	50.1	0.1	3.4e-13	49.6	0.1	1.1	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
TPP_enzyme_C	PF02775.21	gi|390938243|ref|YP_006401981.1|	-	3.9e-24	85.2	0.3	5.3e-24	84.7	0.3	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|390938244|ref|YP_006401982.1|	-	2.9e-74	249.7	0.2	3.9e-74	249.3	0.2	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|390938244|ref|YP_006401982.1|	-	5.4e-30	103.7	0.0	1.1e-29	102.7	0.0	1.6	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|390938244|ref|YP_006401982.1|	-	4.5e-06	26.6	0.0	1.1e-05	25.3	0.0	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
MannoseP_isomer	PF01050.18	gi|390938244|ref|YP_006401982.1|	-	0.1	12.5	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	Mannose-6-phosphate	isomerase
Fer4	PF00037.27	gi|390938245|ref|YP_006401983.1|	-	1.6e-13	49.8	13.5	1.4e-07	31.0	3.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|390938245|ref|YP_006401983.1|	-	6.7e-10	39.0	10.1	8.4e-10	38.6	10.1	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|390938245|ref|YP_006401983.1|	-	8.3e-09	35.2	12.9	0.00012	22.0	3.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|390938245|ref|YP_006401983.1|	-	1.8e-08	34.4	6.8	2.3e-08	34.1	6.8	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|390938245|ref|YP_006401983.1|	-	4.8e-08	33.5	21.6	4.7e-06	27.1	10.5	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|390938245|ref|YP_006401983.1|	-	1.4e-07	32.3	7.7	0.0004	21.3	1.9	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|390938245|ref|YP_006401983.1|	-	8.1e-07	28.8	11.1	0.00019	21.3	1.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|390938245|ref|YP_006401983.1|	-	1.3e-06	28.4	21.8	7.3e-05	22.8	11.8	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|390938245|ref|YP_006401983.1|	-	6.9e-05	23.3	12.1	0.0014	19.1	2.1	2.4	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_8	PF13183.6	gi|390938245|ref|YP_006401983.1|	-	0.0034	17.8	11.7	0.016	15.7	2.0	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|390938245|ref|YP_006401983.1|	-	0.0036	18.0	13.1	0.29	11.9	1.6	3.0	2	1	1	3	3	3	3	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.7	gi|390938245|ref|YP_006401983.1|	-	0.007	16.8	10.5	0.3	11.7	0.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|390938245|ref|YP_006401983.1|	-	0.056	14.0	11.6	0.27	11.8	2.7	2.1	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|390938245|ref|YP_006401983.1|	-	0.54	10.5	7.0	1.2	9.3	7.0	1.5	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|390938245|ref|YP_006401983.1|	-	2.4	9.0	12.2	0.41	11.5	2.0	2.1	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
POR	PF01558.18	gi|390938246|ref|YP_006401984.1|	-	5.1e-34	117.9	0.1	6.1e-34	117.6	0.1	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Tenui_PVC2	PF06656.11	gi|390938247|ref|YP_006401985.1|	-	0.09	10.7	0.8	0.12	10.2	0.8	1.2	1	0	0	1	1	1	0	Tenuivirus	PVC2	protein
CPP1-like	PF11833.8	gi|390938247|ref|YP_006401985.1|	-	0.11	12.2	2.4	0.13	11.9	2.4	1.3	1	1	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
FeoB_associated	PF12669.7	gi|390938248|ref|YP_006401986.1|	-	0.082	13.3	0.2	0.1	13.0	0.2	1.3	1	1	0	1	1	1	0	FeoB-associated	Cys-rich	membrane	protein
SNF	PF00209.18	gi|390938249|ref|YP_006401987.1|	-	8.2e-52	176.6	39.7	6.6e-28	97.7	20.6	2.2	1	1	1	2	2	2	2	Sodium:neurotransmitter	symporter	family
UPF0154	PF03672.13	gi|390938249|ref|YP_006401987.1|	-	0.046	13.7	0.2	0.046	13.7	0.2	2.6	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0154)
DUF1516	PF07457.11	gi|390938249|ref|YP_006401987.1|	-	1.3	9.2	11.0	5.3	7.3	1.3	3.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1516)
DUF2275	PF10039.9	gi|390938250|ref|YP_006401988.1|	-	0.12	12.5	0.1	0.2	11.7	0.1	1.3	1	0	0	1	1	1	0	Predicted	integral	membrane	protein	(DUF2275)
Myco_arth_vir_N	PF09610.10	gi|390938250|ref|YP_006401988.1|	-	4.2	7.5	9.6	1.2	9.3	5.7	2.1	2	0	0	2	2	2	0	Mycoplasma	virulence	signal	region	(Myco_arth_vir_N)
Aldolase_II	PF00596.21	gi|390938251|ref|YP_006401989.1|	-	5.4e-46	156.9	0.1	6.3e-46	156.7	0.1	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
NCE101	PF11654.8	gi|390938252|ref|YP_006401990.1|	-	0.0023	17.6	0.1	0.0043	16.7	0.1	1.5	1	0	0	1	1	1	1	Non-classical	export	protein	1
Glycos_transf_2	PF00535.26	gi|390938253|ref|YP_006401991.1|	-	6.4e-21	74.9	0.0	9.4e-21	74.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|390938253|ref|YP_006401991.1|	-	8.4e-11	42.2	0.0	1.5e-10	41.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|390938253|ref|YP_006401991.1|	-	0.0072	15.8	0.0	0.013	14.9	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.6	gi|390938253|ref|YP_006401991.1|	-	0.0078	16.7	0.0	0.015	15.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
DUF373	PF04123.13	gi|390938253|ref|YP_006401991.1|	-	0.14	11.6	5.3	1.5	8.2	0.4	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
Glycos_transf_2	PF00535.26	gi|390938254|ref|YP_006401992.1|	-	1.9e-28	99.4	0.1	9.7e-28	97.1	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|390938254|ref|YP_006401992.1|	-	6.9e-26	91.5	0.0	1.4e-25	90.5	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|390938254|ref|YP_006401992.1|	-	8.8e-19	68.2	0.2	1.5e-18	67.4	0.2	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|390938254|ref|YP_006401992.1|	-	6.5e-15	55.0	0.1	3.1e-14	52.8	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|390938254|ref|YP_006401992.1|	-	0.0012	18.4	0.0	0.0023	17.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|390938254|ref|YP_006401992.1|	-	0.002	18.6	0.1	0.0056	17.2	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
ArsA_ATPase	PF02374.15	gi|390938254|ref|YP_006401992.1|	-	0.25	10.5	0.0	0.36	10.0	0.0	1.2	1	0	0	1	1	1	0	Anion-transporting	ATPase
Glyco_transf_4	PF13439.6	gi|390938256|ref|YP_006401994.1|	-	1.8e-11	44.4	0.2	2e-11	44.2	0.2	1.1	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|390938256|ref|YP_006401994.1|	-	1e-09	39.0	0.2	1.2e-09	38.8	0.2	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.11	gi|390938256|ref|YP_006401994.1|	-	0.00094	18.9	0.0	0.00097	18.9	0.0	1.1	1	0	0	1	1	1	1	Starch	synthase	catalytic	domain
Glyco_trans_4_2	PF13477.6	gi|390938256|ref|YP_006401994.1|	-	0.0015	18.6	0.0	0.0016	18.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
RHH_1	PF01402.21	gi|390938257|ref|YP_006401995.1|	-	0.061	13.3	0.1	0.11	12.4	0.1	1.5	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
PIN	PF01850.21	gi|390938258|ref|YP_006401996.1|	-	1.1e-16	61.5	0.4	1.3e-16	61.2	0.4	1.1	1	0	0	1	1	1	1	PIN	domain
Methyltransf_21	PF05050.12	gi|390938260|ref|YP_006401998.1|	-	8.1e-10	39.0	0.0	1.1e-09	38.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.16	gi|390938260|ref|YP_006401998.1|	-	0.096	12.4	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	Met-10+	like-protein
Glyco_transf_4	PF13439.6	gi|390938261|ref|YP_006401999.1|	-	9.3e-06	25.7	0.4	1e-05	25.6	0.4	1.0	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|390938261|ref|YP_006401999.1|	-	2.3e-05	24.9	0.4	2.5e-05	24.8	0.4	1.0	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.11	gi|390938261|ref|YP_006401999.1|	-	0.016	14.9	0.1	0.016	14.9	0.1	1.0	1	0	0	1	1	1	0	Starch	synthase	catalytic	domain
Glyco_trans_4_2	PF13477.6	gi|390938261|ref|YP_006401999.1|	-	0.13	12.2	0.0	0.13	12.2	0.0	1.0	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Glyco_trans_1_4	PF13692.6	gi|390938262|ref|YP_006402000.1|	-	5.8e-08	33.2	0.0	1.1e-07	32.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Polbeta	PF18765.1	gi|390938264|ref|YP_006402002.1|	-	0.072	13.2	1.0	0.32	11.1	1.0	1.9	1	1	0	1	1	1	0	Polymerase	beta,	Nucleotidyltransferase
Glycos_transf_1	PF00534.20	gi|390938265|ref|YP_006402003.1|	-	4.9e-18	65.3	0.0	6.3e-17	61.6	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|390938265|ref|YP_006402003.1|	-	2.5e-15	57.1	0.0	1e-14	55.1	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|390938265|ref|YP_006402003.1|	-	2.6e-14	53.6	0.6	8.9e-14	51.8	0.6	1.8	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|390938265|ref|YP_006402003.1|	-	1.2e-05	25.8	0.0	2.3e-05	24.9	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
CRM1_repeat	PF18777.1	gi|390938266|ref|YP_006402004.1|	-	0.033	13.7	0.0	0.06	12.9	0.0	1.5	1	0	0	1	1	1	0	Chromosome	region	maintenance	or	exportin	repeat
Glycos_transf_1	PF00534.20	gi|390938267|ref|YP_006402005.1|	-	5.3e-28	97.7	0.0	8.7e-28	97.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|390938267|ref|YP_006402005.1|	-	2.2e-23	83.1	0.9	1.5e-22	80.4	0.1	2.0	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|390938267|ref|YP_006402005.1|	-	1.5e-20	74.0	0.0	2.5e-20	73.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|390938267|ref|YP_006402005.1|	-	5e-07	30.3	0.0	4.3e-06	27.3	0.0	2.4	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|390938267|ref|YP_006402005.1|	-	0.11	12.9	0.0	0.22	12.0	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|390938268|ref|YP_006402006.1|	-	9.1e-14	51.4	0.0	1.5e-13	50.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|390938268|ref|YP_006402006.1|	-	3.4e-07	30.8	0.0	5.8e-07	30.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|390938268|ref|YP_006402006.1|	-	0.0027	17.7	0.0	0.0068	16.4	0.0	1.8	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|390938268|ref|YP_006402006.1|	-	0.061	13.7	0.0	0.13	12.7	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
PS_pyruv_trans	PF04230.13	gi|390938271|ref|YP_006402009.1|	-	5.5e-24	85.6	0.8	1.5e-23	84.2	0.8	1.6	1	1	0	1	1	1	1	Polysaccharide	pyruvyl	transferase
RNase_II_C_S1	PF18614.1	gi|390938272|ref|YP_006402010.1|	-	0.11	12.4	0.3	0.25	11.3	0.3	1.6	1	0	0	1	1	1	0	RNase	II-type	exonuclease	C-terminal	S1	domain
gag-asp_proteas	PF13975.6	gi|390938273|ref|YP_006402011.1|	-	0.00014	22.3	0.0	0.00022	21.7	0.0	1.3	1	0	0	1	1	1	1	gag-polyprotein	putative	aspartyl	protease
Asp_protease_2	PF13650.6	gi|390938273|ref|YP_006402011.1|	-	0.00015	22.3	0.0	0.00025	21.6	0.0	1.5	1	1	0	1	1	1	1	Aspartyl	protease
Asp	PF00026.23	gi|390938273|ref|YP_006402011.1|	-	0.13	11.7	0.0	0.14	11.6	0.0	1.1	1	0	0	1	1	1	0	Eukaryotic	aspartyl	protease
Ribosomal_L40e	PF01020.17	gi|390938274|ref|YP_006402012.1|	-	0.07	13.0	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	L40e	family
3HBOH	PF10605.9	gi|390938274|ref|YP_006402012.1|	-	0.18	10.0	0.0	0.19	10.0	0.0	1.0	1	0	0	1	1	1	0	3HB-oligomer	hydrolase	(3HBOH)
DUF4490	PF14892.6	gi|390938275|ref|YP_006402013.1|	-	0.055	13.5	0.0	0.093	12.8	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4490)
CX9C	PF16860.5	gi|390938275|ref|YP_006402013.1|	-	0.18	11.8	1.7	0.6	10.2	1.2	2.0	1	1	1	2	2	2	0	CHCH-CHCH-like	Cx9C,	IMS	import	disulfide	relay-system,
Bap31_Bap29_C	PF18035.1	gi|390938275|ref|YP_006402013.1|	-	5.8	7.0	8.1	7.7	6.6	4.1	2.9	2	1	0	2	2	2	0	Bap31/Bap29	cytoplasmic	coiled-coil	domain
Epimerase	PF01370.21	gi|390938276|ref|YP_006402014.1|	-	1.4e-55	188.4	0.0	1.7e-55	188.1	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|390938276|ref|YP_006402014.1|	-	1.9e-45	155.8	0.0	5.7e-45	154.2	0.0	1.8	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|390938276|ref|YP_006402014.1|	-	1.9e-24	86.3	0.0	2.3e-24	86.0	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|390938276|ref|YP_006402014.1|	-	3.7e-18	65.7	0.0	3.7e-17	62.4	0.0	2.2	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.19	gi|390938276|ref|YP_006402014.1|	-	1.2e-17	63.8	0.0	1.6e-17	63.5	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|390938276|ref|YP_006402014.1|	-	4.9e-07	29.2	0.5	1.2e-05	24.7	0.0	2.7	1	1	1	2	2	2	1	Male	sterility	protein
adh_short	PF00106.25	gi|390938276|ref|YP_006402014.1|	-	0.00042	19.8	0.0	0.00082	18.9	0.0	1.6	1	1	0	1	1	1	1	short	chain	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|390938276|ref|YP_006402014.1|	-	0.0046	16.6	0.0	0.087	12.4	0.0	2.1	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|390938276|ref|YP_006402014.1|	-	0.015	15.2	0.0	0.13	12.1	0.0	2.0	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|390938276|ref|YP_006402014.1|	-	0.088	13.1	0.2	0.19	12.0	0.2	1.6	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Ldh_1_N	PF00056.23	gi|390938276|ref|YP_006402014.1|	-	0.14	12.2	0.0	0.22	11.6	0.0	1.3	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
KR	PF08659.10	gi|390938276|ref|YP_006402014.1|	-	0.18	11.7	0.0	0.28	11.1	0.0	1.4	1	0	0	1	1	1	0	KR	domain
Glyco_trans_1_4	PF13692.6	gi|390938277|ref|YP_006402015.1|	-	4.6e-14	53.0	0.0	1.3e-13	51.5	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|390938277|ref|YP_006402015.1|	-	6.5e-14	51.8	0.0	9.5e-14	51.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|390938278|ref|YP_006402016.1|	-	4e-08	33.8	0.0	6.5e-08	33.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|390938278|ref|YP_006402016.1|	-	5.9e-07	29.2	0.0	1.4e-06	27.9	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|390938278|ref|YP_006402016.1|	-	0.016	15.6	0.1	0.034	14.6	0.1	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Rubredoxin_2	PF18073.1	gi|390938280|ref|YP_006402018.1|	-	0.0016	18.1	1.6	0.77	9.5	0.3	2.2	2	0	0	2	2	2	2	Rubredoxin	metal	binding	domain
Zn_ribbon_SprT	PF17283.2	gi|390938280|ref|YP_006402018.1|	-	0.018	15.0	0.8	5.4	7.0	0.1	2.3	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|390938280|ref|YP_006402018.1|	-	0.022	14.8	0.8	0.84	9.8	0.2	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|390938280|ref|YP_006402018.1|	-	0.071	13.1	1.3	7	6.7	0.0	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_10	PF10058.9	gi|390938280|ref|YP_006402018.1|	-	0.081	12.7	0.6	2.5	7.9	0.2	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
DUF35_N	PF12172.8	gi|390938280|ref|YP_006402018.1|	-	0.12	12.3	1.3	6.7	6.7	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
RNA_POL_M_15KD	PF02150.16	gi|390938280|ref|YP_006402018.1|	-	0.26	11.2	1.9	1.5	8.7	0.2	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-ACC	PF17848.1	gi|390938280|ref|YP_006402018.1|	-	0.26	11.4	2.3	8.9	6.5	0.3	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn_Tnp_IS1	PF03811.13	gi|390938280|ref|YP_006402018.1|	-	2.6	7.8	5.1	9.9	6.0	0.1	2.5	3	0	0	3	3	3	0	InsA	N-terminal	domain
Pkinase	PF00069.25	gi|390938281|ref|YP_006402019.1|	-	3.9e-05	23.2	0.0	4.9e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
tRNA_NucTransf2	PF09249.11	gi|390938282|ref|YP_006402020.1|	-	1.6e-38	131.4	0.0	3.2e-38	130.5	0.0	1.5	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|390938282|ref|YP_006402020.1|	-	9e-12	45.1	0.0	2.2e-11	43.9	0.0	1.7	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
SMODS	PF18144.1	gi|390938282|ref|YP_006402020.1|	-	0.00015	21.9	0.0	0.00034	20.8	0.0	1.6	1	0	0	1	1	1	1	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
LigT_PEase	PF02834.16	gi|390938283|ref|YP_006402021.1|	-	4.4e-29	100.5	0.0	6.3e-15	55.1	0.0	2.0	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.6	gi|390938283|ref|YP_006402021.1|	-	9.8e-10	38.5	0.0	1.2e-09	38.2	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.9	gi|390938283|ref|YP_006402021.1|	-	3.4e-09	36.9	0.0	3.1e-08	33.8	0.0	1.9	1	1	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
HVSL	PF09749.9	gi|390938283|ref|YP_006402021.1|	-	0.011	15.2	0.0	0.036	13.5	0.0	1.6	1	1	1	2	2	2	0	Uncharacterised	conserved	protein
AAA_17	PF13207.6	gi|390938284|ref|YP_006402022.1|	-	3.6e-16	59.8	0.1	5.7e-16	59.2	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|390938284|ref|YP_006402022.1|	-	5.2e-12	46.4	0.1	8.8e-12	45.7	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|390938284|ref|YP_006402022.1|	-	2e-06	28.1	0.2	1.1e-05	25.6	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
CoaE	PF01121.20	gi|390938284|ref|YP_006402022.1|	-	0.0025	17.5	0.1	0.59	9.8	0.0	2.2	2	0	0	2	2	2	2	Dephospho-CoA	kinase
AAA_16	PF13191.6	gi|390938284|ref|YP_006402022.1|	-	0.0088	16.4	0.1	0.021	15.2	0.1	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
cobW	PF02492.19	gi|390938284|ref|YP_006402022.1|	-	0.011	15.4	0.0	0.68	9.5	0.0	2.3	1	1	1	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.6	gi|390938284|ref|YP_006402022.1|	-	0.091	13.0	0.0	0.17	12.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
DUF3987	PF13148.6	gi|390938284|ref|YP_006402022.1|	-	0.092	11.7	0.0	0.15	11.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
AAA_30	PF13604.6	gi|390938284|ref|YP_006402022.1|	-	0.1	12.3	0.3	0.64	9.7	0.3	2.3	1	1	0	1	1	1	0	AAA	domain
RNA_binding	PF01877.17	gi|390938285|ref|YP_006402023.1|	-	7.7e-17	61.7	0.3	9.5e-17	61.4	0.3	1.1	1	0	0	1	1	1	1	RNA	binding
rOmpB	PF12334.8	gi|390938285|ref|YP_006402023.1|	-	0.15	11.5	0.1	0.64	9.5	0.0	1.7	1	1	1	2	2	2	0	Rickettsia	outer	membrane	protein	B
PCNA_N	PF00705.18	gi|390938286|ref|YP_006402024.1|	-	1.1e-13	51.0	0.2	3.5e-13	49.4	0.0	1.8	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
Rad9	PF04139.13	gi|390938286|ref|YP_006402024.1|	-	4.7e-06	26.2	0.4	6.4e-06	25.8	0.1	1.5	2	0	0	2	2	2	1	Rad9
PCNA_C	PF02747.15	gi|390938286|ref|YP_006402024.1|	-	1.4e-05	25.3	3.0	0.00021	21.5	0.3	2.5	3	0	0	3	3	3	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad1	PF02144.16	gi|390938286|ref|YP_006402024.1|	-	0.00037	19.7	0.6	0.48	9.4	0.0	2.1	1	1	0	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
DUF1622	PF07784.11	gi|390938286|ref|YP_006402024.1|	-	0.12	12.3	0.0	1.5	8.8	0.0	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1622)
Lactamase_B	PF00753.27	gi|390938288|ref|YP_006402026.1|	-	1.9e-08	34.5	0.0	3.8e-08	33.6	0.0	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|390938288|ref|YP_006402026.1|	-	0.01	15.3	0.0	0.013	15.0	0.0	1.2	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
MacB_PCD	PF12704.7	gi|390938289|ref|YP_006402027.1|	-	2.5e-20	73.7	2.8	2.5e-20	73.7	2.8	2.3	2	1	1	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|390938289|ref|YP_006402027.1|	-	2.9e-14	53.3	6.2	2.9e-14	53.3	6.2	3.2	3	0	0	3	3	3	1	FtsX-like	permease	family
NapD	PF03927.13	gi|390938289|ref|YP_006402027.1|	-	0.13	12.3	0.0	0.37	10.9	0.0	1.8	1	0	0	1	1	1	0	NapD	protein
NPCBM_assoc	PF10633.9	gi|390938290|ref|YP_006402028.1|	-	4.2e-10	39.7	4.3	0.039	14.2	0.1	5.3	5	0	0	5	5	5	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Gemini_mov	PF01708.16	gi|390938290|ref|YP_006402028.1|	-	0.028	14.2	0.3	0.061	13.1	0.3	1.5	1	0	0	1	1	1	0	Geminivirus	putative	movement	protein
PKD	PF00801.20	gi|390938290|ref|YP_006402028.1|	-	0.085	12.7	0.7	0.58	10.0	0.2	2.8	2	0	0	2	2	2	0	PKD	domain
DUF11	PF01345.18	gi|390938290|ref|YP_006402028.1|	-	9.2	6.6	20.7	11	6.5	0.1	6.1	6	1	0	6	6	6	0	Domain	of	unknown	function	DUF11
ABC_tran	PF00005.27	gi|390938291|ref|YP_006402029.1|	-	4.5e-35	121.1	0.0	5.6e-35	120.8	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938291|ref|YP_006402029.1|	-	2.1e-07	31.0	0.1	0.017	14.9	0.2	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|390938291|ref|YP_006402029.1|	-	7.3e-05	22.7	0.2	0.00015	21.7	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
AAA_29	PF13555.6	gi|390938291|ref|YP_006402029.1|	-	9.2e-05	22.1	0.2	0.00018	21.2	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|390938291|ref|YP_006402029.1|	-	0.00021	20.8	0.1	0.25	10.8	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|390938291|ref|YP_006402029.1|	-	0.00078	20.0	0.0	0.0014	19.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|390938291|ref|YP_006402029.1|	-	0.0022	18.3	0.2	0.0062	16.8	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|390938291|ref|YP_006402029.1|	-	0.0036	17.1	0.0	0.12	12.0	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|390938291|ref|YP_006402029.1|	-	0.0039	17.6	0.1	0.0058	17.0	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|390938291|ref|YP_006402029.1|	-	0.02	15.0	0.0	0.051	13.7	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|390938291|ref|YP_006402029.1|	-	0.022	14.8	0.1	0.13	12.3	0.1	2.0	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_25	PF13481.6	gi|390938291|ref|YP_006402029.1|	-	0.059	12.9	0.0	0.097	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|390938291|ref|YP_006402029.1|	-	0.085	12.6	1.4	1.1	8.9	0.1	2.2	1	1	1	2	2	2	0	Cytidylate	kinase
AAA_24	PF13479.6	gi|390938291|ref|YP_006402029.1|	-	0.089	12.5	0.0	0.16	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|390938291|ref|YP_006402029.1|	-	0.098	12.6	0.2	3.8	7.4	0.0	2.3	2	0	0	2	2	2	0	NTPase
AAA_30	PF13604.6	gi|390938291|ref|YP_006402029.1|	-	0.1	12.3	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|390938291|ref|YP_006402029.1|	-	0.14	11.8	0.1	0.23	11.0	0.1	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Zot	PF05707.12	gi|390938291|ref|YP_006402029.1|	-	0.17	11.5	0.0	2.8	7.5	0.0	2.1	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
SbcCD_C	PF13558.6	gi|390938291|ref|YP_006402029.1|	-	0.2	11.9	0.1	3.1	8.1	0.1	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
PadR	PF03551.14	gi|390938292|ref|YP_006402030.1|	-	2.8e-14	52.8	0.2	5e-14	52.0	0.2	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|390938292|ref|YP_006402030.1|	-	3.6e-05	23.9	0.1	7.4e-05	22.9	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|390938292|ref|YP_006402030.1|	-	0.0017	18.3	0.2	0.0041	17.1	0.2	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|390938292|ref|YP_006402030.1|	-	0.0054	17.2	0.1	0.019	15.5	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
DUF4364	PF14277.6	gi|390938292|ref|YP_006402030.1|	-	0.031	14.0	0.1	0.049	13.4	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
YjcQ	PF09639.10	gi|390938292|ref|YP_006402030.1|	-	0.066	13.4	1.4	0.16	12.2	0.5	2.2	2	1	1	3	3	3	0	YjcQ	protein
DUF1495	PF07381.11	gi|390938292|ref|YP_006402030.1|	-	0.11	12.4	0.0	0.23	11.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
ABC_tran	PF00005.27	gi|390938293|ref|YP_006402031.1|	-	3.4e-34	118.3	0.0	5.7e-34	117.6	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938293|ref|YP_006402031.1|	-	1.1e-11	45.1	1.2	6.3e-07	29.5	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|390938293|ref|YP_006402031.1|	-	2.5e-08	34.5	0.0	6.1e-08	33.3	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_15	PF13175.6	gi|390938293|ref|YP_006402031.1|	-	6.2e-05	22.9	0.0	0.34	10.5	0.0	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|390938293|ref|YP_006402031.1|	-	0.0003	21.3	0.9	0.00068	20.2	0.9	1.7	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|390938293|ref|YP_006402031.1|	-	0.0004	19.9	0.0	0.002	17.6	0.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SRP54	PF00448.22	gi|390938293|ref|YP_006402031.1|	-	0.0018	17.9	0.0	0.0032	17.1	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA	PF00004.29	gi|390938293|ref|YP_006402031.1|	-	0.0019	18.6	0.1	0.042	14.3	0.1	2.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|390938293|ref|YP_006402031.1|	-	0.0022	17.7	0.1	0.0041	16.8	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|390938293|ref|YP_006402031.1|	-	0.019	14.9	0.0	0.026	14.4	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
T3RM_EcoP15I_C	PF18273.1	gi|390938293|ref|YP_006402031.1|	-	0.025	14.9	0.0	0.058	13.7	0.0	1.6	1	0	0	1	1	1	0	Type	III	R-M	EcoP15I	C-terminal	domain
AAA_24	PF13479.6	gi|390938293|ref|YP_006402031.1|	-	0.029	14.1	0.4	4.3	7.0	0.1	3.0	2	1	1	3	3	3	0	AAA	domain
AAA_30	PF13604.6	gi|390938293|ref|YP_006402031.1|	-	0.074	12.8	0.1	0.14	11.8	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|390938293|ref|YP_006402031.1|	-	0.15	12.0	0.7	4.3	7.2	0.1	2.5	2	1	1	3	3	3	0	NTPase
AAA_16	PF13191.6	gi|390938293|ref|YP_006402031.1|	-	0.18	12.1	0.0	0.47	10.8	0.0	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
ABC2_membrane	PF01061.24	gi|390938294|ref|YP_006402032.1|	-	8.4e-34	116.8	31.9	8.4e-34	116.8	31.9	2.3	2	1	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|390938294|ref|YP_006402032.1|	-	4.4e-16	58.9	31.4	4.4e-16	58.9	31.4	1.7	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
VirB3	PF05101.13	gi|390938294|ref|YP_006402032.1|	-	0.041	14.1	1.0	0.041	14.1	1.0	3.8	2	1	1	3	3	3	0	Type	IV	secretory	pathway,	VirB3-like	protein
AFOR_N	PF02730.15	gi|390938295|ref|YP_006402033.1|	-	3.4e-33	115.2	0.0	4.7e-33	114.7	0.0	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
AFOR_C	PF01314.18	gi|390938295|ref|YP_006402033.1|	-	7.3e-16	58.1	0.0	2.5e-15	56.4	0.0	1.8	1	1	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
tRNA-synt_1d	PF00750.19	gi|390938296|ref|YP_006402034.1|	-	3.4e-28	98.6	2.7	7e-14	51.5	0.9	2.2	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.15	gi|390938296|ref|YP_006402034.1|	-	5e-15	55.7	1.6	9.6e-15	54.8	0.4	2.2	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
tRNA-synt_1e	PF01406.19	gi|390938296|ref|YP_006402034.1|	-	0.00098	18.5	0.0	0.0076	15.6	0.0	2.3	2	2	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
Gp49	PF05973.14	gi|390938296|ref|YP_006402034.1|	-	0.049	13.8	0.5	2.6	8.2	0.0	2.8	2	0	0	2	2	2	0	Phage	derived	protein	Gp49-like	(DUF891)
Cep3	PF16846.5	gi|390938296|ref|YP_006402034.1|	-	0.062	11.8	0.0	0.097	11.1	0.0	1.2	1	0	0	1	1	1	0	Centromere	DNA-binding	protein	complex	CBF3	subunit	B
Arg_tRNA_synt_N	PF03485.16	gi|390938296|ref|YP_006402034.1|	-	0.15	12.7	0.0	0.4	11.3	0.0	1.7	1	0	0	1	1	1	0	Arginyl	tRNA	synthetase	N	terminal	domain
EamA	PF00892.20	gi|390938297|ref|YP_006402035.1|	-	8.4e-13	48.7	32.6	3.3e-07	30.5	12.0	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
MoeA_N	PF03453.17	gi|390938298|ref|YP_006402036.1|	-	7e-45	152.6	0.8	1.1e-44	152.0	0.8	1.3	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|390938298|ref|YP_006402036.1|	-	3.8e-21	75.3	0.0	6.8e-21	74.4	0.0	1.4	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|390938298|ref|YP_006402036.1|	-	1.5e-17	63.5	0.1	5.4e-17	61.7	0.1	2.0	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
ArsA_ATPase	PF02374.15	gi|390938299|ref|YP_006402037.1|	-	2.8e-35	122.0	0.0	3.8e-35	121.6	0.0	1.1	1	0	0	1	1	1	1	Anion-transporting	ATPase
AAA_31	PF13614.6	gi|390938299|ref|YP_006402037.1|	-	1.2e-09	38.3	0.0	1.6e-08	34.7	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
CbiA	PF01656.23	gi|390938299|ref|YP_006402037.1|	-	5e-08	33.1	0.0	1.1e-07	31.9	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|390938299|ref|YP_006402037.1|	-	1.4e-07	31.2	0.2	5e-05	22.9	0.1	2.6	3	0	0	3	3	3	2	NUBPL	iron-transfer	P-loop	NTPase
AAA_25	PF13481.6	gi|390938299|ref|YP_006402037.1|	-	0.0037	16.9	0.0	0.0096	15.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
MipZ	PF09140.11	gi|390938299|ref|YP_006402037.1|	-	0.0085	15.4	0.1	0.051	12.9	0.0	2.0	2	0	0	2	2	2	1	ATPase	MipZ
IstB_IS21	PF01695.17	gi|390938299|ref|YP_006402037.1|	-	0.019	14.7	0.0	0.035	13.9	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
PhoH	PF02562.16	gi|390938299|ref|YP_006402037.1|	-	0.035	13.6	0.1	0.059	12.8	0.1	1.3	1	0	0	1	1	1	0	PhoH-like	protein
MeaB	PF03308.16	gi|390938299|ref|YP_006402037.1|	-	0.12	11.4	0.0	0.22	10.4	0.0	1.5	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
APS_kinase	PF01583.20	gi|390938299|ref|YP_006402037.1|	-	0.15	12.0	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
Fer4_NifH	PF00142.18	gi|390938299|ref|YP_006402037.1|	-	0.15	11.5	0.0	0.37	10.2	0.0	1.6	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CBP_BcsQ	PF06564.12	gi|390938299|ref|YP_006402037.1|	-	0.19	11.2	0.0	0.36	10.3	0.0	1.4	1	1	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
CstA	PF02554.14	gi|390938301|ref|YP_006402039.1|	-	1.5e-97	326.8	29.5	3e-97	325.9	29.5	1.4	1	0	0	1	1	1	1	Carbon	starvation	protein	CstA
CstA_5TM	PF13722.6	gi|390938301|ref|YP_006402039.1|	-	1.9e-26	92.7	7.0	1.9e-26	92.7	7.0	3.7	3	1	0	3	3	3	1	5TM	C-terminal	transporter	carbon	starvation	CstA
60KD_IMP	PF02096.20	gi|390938301|ref|YP_006402039.1|	-	4	7.3	14.0	7.5	6.4	2.2	3.3	3	0	0	3	3	3	0	60Kd	inner	membrane	protein
PIG-U	PF06728.13	gi|390938302|ref|YP_006402040.1|	-	0.15	11.1	3.9	0.18	10.8	3.9	1.0	1	0	0	1	1	1	0	GPI	transamidase	subunit	PIG-U
YiaAB	PF05360.14	gi|390938302|ref|YP_006402040.1|	-	0.19	12.0	7.3	0.26	11.6	7.3	1.2	1	0	0	1	1	1	0	yiaA/B	two	helix	domain
DUF3185	PF11381.8	gi|390938302|ref|YP_006402040.1|	-	0.24	11.5	6.0	0.22	11.6	5.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3185)
Polysacc_synt	PF01943.17	gi|390938304|ref|YP_006402042.1|	-	1.2e-18	67.5	29.0	1.2e-18	67.5	29.0	2.7	1	1	2	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|390938304|ref|YP_006402042.1|	-	5.9e-09	35.6	16.9	5.9e-09	35.6	16.9	2.5	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
AIRS	PF00586.24	gi|390938305|ref|YP_006402043.1|	-	6.8e-15	55.5	0.0	1.5e-14	54.4	0.0	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|390938305|ref|YP_006402043.1|	-	2.9e-06	27.5	0.0	5e-06	26.7	0.0	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
DSPc	PF00782.20	gi|390938306|ref|YP_006402044.1|	-	7e-09	35.6	0.0	1.4e-08	34.6	0.0	1.5	1	0	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.27	gi|390938306|ref|YP_006402044.1|	-	0.029	13.9	0.0	0.04	13.5	0.0	1.2	1	0	0	1	1	1	0	Protein-tyrosine	phosphatase
CDKN3	PF05706.12	gi|390938306|ref|YP_006402044.1|	-	0.048	13.3	0.0	0.085	12.5	0.0	1.4	1	0	0	1	1	1	0	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
Myotub-related	PF06602.14	gi|390938306|ref|YP_006402044.1|	-	0.16	10.9	0.0	0.24	10.3	0.0	1.2	1	0	0	1	1	1	0	Myotubularin-like	phosphatase	domain
MS_channel	PF00924.18	gi|390938308|ref|YP_006402046.1|	-	2.9e-15	56.4	9.0	2.9e-15	56.4	9.0	2.6	2	1	1	3	3	3	1	Mechanosensitive	ion	channel
PRA1	PF03208.19	gi|390938308|ref|YP_006402046.1|	-	0.77	9.4	4.4	1.4	8.6	4.4	1.5	1	0	0	1	1	1	0	PRA1	family	protein
SNARE_assoc	PF09335.11	gi|390938309|ref|YP_006402047.1|	-	1.1e-10	42.1	5.2	1.1e-10	42.1	5.2	2.3	1	1	1	2	2	2	1	SNARE	associated	Golgi	protein
DUF983	PF06170.12	gi|390938309|ref|YP_006402047.1|	-	0.067	13.6	3.3	0.2	12.0	3.3	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF983)
SpmSyn_N	PF17950.1	gi|390938309|ref|YP_006402047.1|	-	0.16	12.2	0.0	0.24	11.6	0.0	1.3	1	0	0	1	1	1	0	S-adenosylmethionine	decarboxylase	N	-terminal
DUF2749	PF10907.8	gi|390938309|ref|YP_006402047.1|	-	0.22	11.7	1.9	5.7	7.2	0.7	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2749)
DUF2299	PF10061.9	gi|390938310|ref|YP_006402048.1|	-	7.4e-28	97.0	0.0	8.6e-28	96.8	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
DUF1282	PF06930.12	gi|390938311|ref|YP_006402049.1|	-	0.045	13.5	9.2	0.14	11.9	9.2	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1282)
GPR15L	PF15854.5	gi|390938311|ref|YP_006402049.1|	-	0.7	10.2	3.0	5.5	7.3	0.2	2.3	2	0	0	2	2	2	0	G-protein	coupled	receptor	ligand	15
MarR_2	PF12802.7	gi|390938312|ref|YP_006402050.1|	-	2.3e-08	33.8	0.1	8e-08	32.1	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|390938312|ref|YP_006402050.1|	-	6.5e-07	29.1	0.2	1.6e-06	27.8	0.1	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|390938312|ref|YP_006402050.1|	-	8e-07	28.9	0.5	2e-06	27.6	0.2	1.8	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|390938312|ref|YP_006402050.1|	-	2.6e-06	27.4	0.8	5e-05	23.3	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|390938312|ref|YP_006402050.1|	-	4.6e-05	23.2	0.8	0.0017	18.2	0.1	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|390938312|ref|YP_006402050.1|	-	6.3e-05	22.5	1.5	0.0002	20.9	0.1	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.6	gi|390938312|ref|YP_006402050.1|	-	0.00019	21.6	0.6	0.00033	20.8	0.6	1.5	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_Mga	PF08280.11	gi|390938312|ref|YP_006402050.1|	-	0.00044	20.2	0.3	0.00086	19.3	0.3	1.5	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_27	PF13463.6	gi|390938312|ref|YP_006402050.1|	-	0.00099	19.6	0.3	0.0033	17.9	0.1	1.9	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
tRNA-synt_His	PF13393.6	gi|390938312|ref|YP_006402050.1|	-	0.0098	15.2	0.3	0.012	14.9	0.3	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
Rrf2	PF02082.20	gi|390938312|ref|YP_006402050.1|	-	0.01	16.2	1.0	0.057	13.8	0.1	2.1	1	1	1	2	2	2	1	Transcriptional	regulator
Cdc6_C	PF09079.11	gi|390938312|ref|YP_006402050.1|	-	0.026	14.5	0.1	0.045	13.7	0.1	1.4	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
Glu_dehyd_C	PF16912.5	gi|390938312|ref|YP_006402050.1|	-	0.057	12.9	0.1	0.074	12.5	0.1	1.1	1	0	0	1	1	1	0	Glucose	dehydrogenase	C-terminus
Stn1_C	PF12659.7	gi|390938312|ref|YP_006402050.1|	-	0.058	13.3	0.5	0.078	12.9	0.5	1.2	1	0	0	1	1	1	0	Telomere	capping	C-terminal	wHTH
MarR	PF01047.22	gi|390938312|ref|YP_006402050.1|	-	0.071	13.0	0.2	0.17	11.8	0.2	1.7	1	0	0	1	1	1	0	MarR	family
HTH_36	PF13730.6	gi|390938312|ref|YP_006402050.1|	-	0.075	13.0	1.5	0.3	11.1	0.2	2.5	2	1	1	3	3	3	0	Helix-turn-helix	domain
DprA_WH	PF17782.1	gi|390938312|ref|YP_006402050.1|	-	0.079	13.1	0.1	0.46	10.6	0.0	2.1	2	0	0	2	2	2	0	DprA	winged	helix	domain
HTH_11	PF08279.12	gi|390938312|ref|YP_006402050.1|	-	0.079	12.9	0.2	0.17	11.8	0.2	1.6	1	0	0	1	1	1	0	HTH	domain
DUF2175	PF09943.9	gi|390938312|ref|YP_006402050.1|	-	0.1	12.9	1.2	0.13	12.6	1.2	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
Peptidase_C92	PF05708.12	gi|390938312|ref|YP_006402050.1|	-	0.14	12.2	0.1	0.46	10.6	0.1	1.7	1	1	1	2	2	2	0	Permuted	papain-like	amidase	enzyme,	YaeF/YiiX,	C92	family
Radical_SAM	PF04055.21	gi|390938314|ref|YP_006402052.1|	-	1.3e-15	58.2	0.3	3.9e-15	56.6	0.0	2.0	2	1	1	3	3	3	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|390938314|ref|YP_006402052.1|	-	0.00091	19.3	0.0	0.32	11.1	0.0	2.4	2	0	0	2	2	2	2	B12	binding	domain
tRNA-synt_1g	PF09334.11	gi|390938315|ref|YP_006402053.1|	-	1.2e-94	317.3	3.8	9.4e-51	172.8	0.2	2.1	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.22	gi|390938315|ref|YP_006402053.1|	-	3.5e-28	98.2	3.1	5.9e-14	51.3	0.7	3.9	1	1	2	3	3	3	3	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|390938315|ref|YP_006402053.1|	-	4e-09	36.6	0.0	1e-08	35.3	0.0	1.7	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|390938315|ref|YP_006402053.1|	-	5.9e-08	32.4	0.1	0.00037	19.9	0.0	2.5	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|390938315|ref|YP_006402053.1|	-	0.00022	20.3	1.0	0.0052	15.7	0.0	2.7	3	1	0	3	3	3	1	tRNA	synthetases	class	I	(K)
DUF3703	PF12487.8	gi|390938315|ref|YP_006402053.1|	-	0.2	11.5	0.1	0.44	10.4	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3703)
ROK	PF00480.20	gi|390938316|ref|YP_006402054.1|	-	2.1e-58	198.1	0.0	2.7e-58	197.8	0.0	1.0	1	0	0	1	1	1	1	ROK	family
Glucokinase	PF02685.16	gi|390938316|ref|YP_006402054.1|	-	0.00067	18.7	0.0	0.61	9.0	0.0	2.2	2	0	0	2	2	2	2	Glucokinase
DUF4234	PF14018.6	gi|390938317|ref|YP_006402055.1|	-	0.0035	17.4	0.1	0.0035	17.4	0.1	3.9	4	1	0	4	4	4	1	Domain	of	unknown	function	(DUF4234)
CPP1-like	PF11833.8	gi|390938317|ref|YP_006402055.1|	-	0.042	13.5	0.3	0.042	13.5	0.3	2.8	3	0	0	3	3	3	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
SHR3_chaperone	PF08229.11	gi|390938317|ref|YP_006402055.1|	-	1.1	8.2	10.4	1.5	7.8	6.2	2.9	2	1	0	2	2	2	0	ER	membrane	protein	SH3
Asparaginase_2	PF01112.18	gi|390938318|ref|YP_006402056.1|	-	1.4e-72	244.4	0.0	1.6e-72	244.2	0.0	1.0	1	0	0	1	1	1	1	Asparaginase
Hydrolase	PF00702.26	gi|390938319|ref|YP_006402057.1|	-	7.7e-09	36.1	0.1	1.6e-05	25.3	0.0	2.1	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|390938319|ref|YP_006402057.1|	-	1.8e-08	35.0	0.0	3e-08	34.3	0.0	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|390938319|ref|YP_006402057.1|	-	6.1e-08	33.0	0.2	2.1e-07	31.2	0.2	1.9	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|390938319|ref|YP_006402057.1|	-	4.2e-07	30.0	0.5	0.0001	22.1	0.0	2.9	2	1	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
NIF	PF03031.18	gi|390938319|ref|YP_006402057.1|	-	3.7e-05	23.6	1.9	0.00036	20.3	1.9	2.0	1	1	0	1	1	1	1	NLI	interacting	factor-like	phosphatase
Plk4_PB1	PF18190.1	gi|390938319|ref|YP_006402057.1|	-	0.0091	16.1	0.0	0.016	15.3	0.0	1.5	1	0	0	1	1	1	1	Polo-like	Kinase	4	Polo	Box	1
Trp_syntA	PF00290.20	gi|390938319|ref|YP_006402057.1|	-	0.013	14.4	0.0	0.015	14.2	0.0	1.2	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
DUF2072	PF09845.9	gi|390938319|ref|YP_006402057.1|	-	0.041	14.1	0.0	0.063	13.5	0.0	1.3	1	0	0	1	1	1	0	Zn-ribbon	containing	protein
ATP_bind_1	PF03029.17	gi|390938320|ref|YP_006402058.1|	-	5.9e-62	209.6	0.0	6.7e-62	209.4	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_18	PF13238.6	gi|390938320|ref|YP_006402058.1|	-	0.00086	19.9	0.0	0.0032	18.0	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
GTP_EFTU	PF00009.27	gi|390938320|ref|YP_006402058.1|	-	0.0012	18.5	0.0	0.034	13.7	0.0	2.5	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
CLP1_P	PF16575.5	gi|390938320|ref|YP_006402058.1|	-	0.0013	18.6	0.0	0.045	13.5	0.0	2.2	2	0	0	2	2	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
FeoB_N	PF02421.18	gi|390938320|ref|YP_006402058.1|	-	0.0014	18.2	0.2	0.4	10.2	0.0	3.0	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
CbiA	PF01656.23	gi|390938320|ref|YP_006402058.1|	-	0.0022	18.1	0.0	0.0026	17.8	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_16	PF13191.6	gi|390938320|ref|YP_006402058.1|	-	0.0032	17.9	0.0	0.0074	16.7	0.0	1.7	2	0	0	2	2	2	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|390938320|ref|YP_006402058.1|	-	0.013	15.6	0.0	0.053	13.6	0.0	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
SRP54	PF00448.22	gi|390938320|ref|YP_006402058.1|	-	0.023	14.3	0.0	0.19	11.3	0.0	2.1	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.6	gi|390938320|ref|YP_006402058.1|	-	0.025	14.3	0.0	0.036	13.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.9	gi|390938320|ref|YP_006402058.1|	-	0.026	14.3	0.1	0.87	9.3	0.0	2.9	3	1	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
ArsA_ATPase	PF02374.15	gi|390938320|ref|YP_006402058.1|	-	0.029	13.6	0.2	0.11	11.6	0.0	1.9	2	1	0	2	2	2	0	Anion-transporting	ATPase
Gtr1_RagA	PF04670.12	gi|390938320|ref|YP_006402058.1|	-	0.033	13.6	0.1	0.15	11.4	0.1	2.0	1	1	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
cobW	PF02492.19	gi|390938320|ref|YP_006402058.1|	-	0.039	13.5	0.1	0.15	11.7	0.1	2.1	1	1	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Med22	PF06179.12	gi|390938320|ref|YP_006402058.1|	-	0.04	14.1	0.1	0.095	12.9	0.1	1.6	1	0	0	1	1	1	0	Surfeit	locus	protein	5	subunit	22	of	Mediator	complex
KTI12	PF08433.10	gi|390938320|ref|YP_006402058.1|	-	0.041	13.3	0.0	0.1	12.0	0.0	1.6	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
Dynamin_N	PF00350.23	gi|390938320|ref|YP_006402058.1|	-	0.042	13.9	1.5	2	8.4	0.0	2.5	3	0	0	3	3	3	0	Dynamin	family
NACHT	PF05729.12	gi|390938320|ref|YP_006402058.1|	-	0.05	13.5	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
T2SSE	PF00437.20	gi|390938320|ref|YP_006402058.1|	-	0.059	12.4	0.0	0.19	10.8	0.0	1.7	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
PhoH	PF02562.16	gi|390938320|ref|YP_006402058.1|	-	0.06	12.8	0.0	0.14	11.6	0.0	1.6	1	0	0	1	1	1	0	PhoH-like	protein
AAA_28	PF13521.6	gi|390938320|ref|YP_006402058.1|	-	0.08	13.2	0.1	0.19	12.0	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|390938320|ref|YP_006402058.1|	-	0.083	12.8	0.1	8	6.3	0.0	3.0	3	0	0	3	3	3	0	RsgA	GTPase
AAA_5	PF07728.14	gi|390938320|ref|YP_006402058.1|	-	0.084	12.9	0.0	11	6.0	0.0	2.7	3	0	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
SMC_N	PF02463.19	gi|390938320|ref|YP_006402058.1|	-	0.092	12.2	0.0	0.31	10.5	0.0	1.8	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
MeaB	PF03308.16	gi|390938320|ref|YP_006402058.1|	-	0.1	11.6	0.0	0.43	9.5	0.0	1.9	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DUF87	PF01935.17	gi|390938320|ref|YP_006402058.1|	-	0.11	12.6	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
HisG	PF01634.18	gi|390938320|ref|YP_006402058.1|	-	0.11	12.5	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	ATP	phosphoribosyltransferase
Zeta_toxin	PF06414.12	gi|390938320|ref|YP_006402058.1|	-	0.12	11.7	0.0	0.17	11.1	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
Radical_SAM	PF04055.21	gi|390938321|ref|YP_006402059.1|	-	1e-20	74.8	0.0	9.1e-20	71.7	0.0	2.1	2	0	0	2	2	2	1	Radical	SAM	superfamily
zf-ribbon_3	PF13248.6	gi|390938321|ref|YP_006402059.1|	-	0.00048	19.4	2.3	0.36	10.3	0.1	2.8	2	0	0	2	2	2	2	zinc-ribbon	domain
Fer4_12	PF13353.6	gi|390938321|ref|YP_006402059.1|	-	0.00057	20.2	0.0	0.0011	19.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
DNA_ligase_ZBD	PF03119.16	gi|390938321|ref|YP_006402059.1|	-	0.014	15.4	0.2	0.91	9.6	0.0	2.7	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
TF_Zn_Ribbon	PF08271.12	gi|390938321|ref|YP_006402059.1|	-	0.028	14.0	5.7	0.15	11.6	0.0	3.0	3	0	0	3	3	3	0	TFIIB	zinc-binding
DZR	PF12773.7	gi|390938321|ref|YP_006402059.1|	-	0.03	14.3	0.0	0.03	14.3	0.0	2.6	3	0	0	3	3	3	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|390938321|ref|YP_006402059.1|	-	0.036	14.0	0.1	0.13	12.2	0.1	2.0	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C4_Topoisom	PF01396.19	gi|390938321|ref|YP_006402059.1|	-	0.06	13.1	6.3	0.69	9.8	0.0	3.3	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-ISL3	PF14690.6	gi|390938321|ref|YP_006402059.1|	-	0.13	12.9	7.9	0.17	12.6	0.0	3.1	2	1	1	3	3	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
IBR	PF01485.21	gi|390938321|ref|YP_006402059.1|	-	0.14	12.4	0.1	0.14	12.4	0.1	2.1	3	0	0	3	3	2	0	IBR	domain,	a	half	RING-finger	domain
zf-ACC	PF17848.1	gi|390938321|ref|YP_006402059.1|	-	0.22	11.6	2.6	12	6.1	0.1	2.7	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf_C2H2_10	PF18414.1	gi|390938321|ref|YP_006402059.1|	-	0.22	11.1	2.6	0.44	10.1	0.3	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger
Zn_Tnp_IS1595	PF12760.7	gi|390938321|ref|YP_006402059.1|	-	0.26	11.3	0.1	0.26	11.3	0.1	3.8	4	0	0	4	4	4	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|390938321|ref|YP_006402059.1|	-	0.33	10.7	10.2	1.4	8.8	0.1	3.0	3	0	0	3	3	2	0	zinc-ribbon	domain
VP_N-CPKC	PF11475.8	gi|390938321|ref|YP_006402059.1|	-	0.55	10.2	0.1	0.55	10.2	0.1	2.7	3	0	0	3	3	2	0	Virion	protein	N	terminal	domain
zinc-ribbons_6	PF07191.12	gi|390938321|ref|YP_006402059.1|	-	0.83	9.7	4.1	3.8	7.5	0.0	2.9	3	0	0	3	3	3	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|390938321|ref|YP_006402059.1|	-	1.8	8.8	0.0	1.8	8.8	0.0	3.4	4	0	0	4	4	3	0	Zinc	ribbon	domain
DpnI	PF06044.12	gi|390938321|ref|YP_006402059.1|	-	3.9	7.1	4.3	4.8	6.8	0.4	2.6	2	2	0	2	2	2	0	Dam-replacing	family
Mu-like_Com	PF10122.9	gi|390938321|ref|YP_006402059.1|	-	4.6	6.8	9.1	12	5.5	0.1	3.2	3	0	0	3	3	3	0	Mu-like	prophage	protein	Com
Pribosyltran_N	PF13793.6	gi|390938322|ref|YP_006402060.1|	-	7.5e-23	80.7	0.0	1.9e-21	76.2	0.0	2.2	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.27	gi|390938322|ref|YP_006402060.1|	-	1.7e-15	56.9	1.7	2.7e-14	53.0	1.0	2.4	1	1	1	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.6	gi|390938322|ref|YP_006402060.1|	-	2.3e-11	44.1	0.6	4.5e-11	43.1	0.6	1.5	1	0	0	1	1	1	1	Phosphoribosyl	synthetase-associated	domain
UPRTase	PF14681.6	gi|390938322|ref|YP_006402060.1|	-	0.00039	19.9	0.1	0.00097	18.6	0.1	1.6	1	1	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|390938322|ref|YP_006402060.1|	-	0.014	14.9	0.0	0.024	14.1	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosyl	transferase
UPF0020	PF01170.18	gi|390938323|ref|YP_006402061.1|	-	7e-19	68.3	0.0	1.7e-17	63.8	0.0	2.5	2	1	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
N6_N4_Mtase	PF01555.18	gi|390938323|ref|YP_006402061.1|	-	6.8e-07	29.2	0.0	0.00033	20.4	0.0	2.2	2	0	0	2	2	2	2	DNA	methylase
Cons_hypoth95	PF03602.15	gi|390938323|ref|YP_006402061.1|	-	8.9e-06	25.5	0.0	1.7e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
N6_Mtase	PF02384.16	gi|390938323|ref|YP_006402061.1|	-	0.013	14.8	0.0	0.033	13.5	0.0	1.7	1	1	0	1	1	1	0	N-6	DNA	Methylase
MethyltransfD12	PF02086.15	gi|390938323|ref|YP_006402061.1|	-	0.057	13.1	0.0	2.7	7.6	0.0	2.2	2	0	0	2	2	2	0	D12	class	N6	adenine-specific	DNA	methyltransferase
Lactamase_B_2	PF12706.7	gi|390938324|ref|YP_006402062.1|	-	9.9e-23	80.7	0.0	1.2e-22	80.4	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|390938324|ref|YP_006402062.1|	-	7.9e-11	42.3	0.0	1.2e-10	41.8	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.6	gi|390938324|ref|YP_006402062.1|	-	9.5e-11	41.2	0.0	1.7e-10	40.4	0.0	1.4	1	0	0	1	1	1	1	tRNase	Z	endonuclease
Lactamase_B_3	PF13483.6	gi|390938324|ref|YP_006402062.1|	-	0.014	15.3	0.2	0.059	13.3	0.2	1.9	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
Mrr_cat	PF04471.12	gi|390938325|ref|YP_006402063.1|	-	0.00015	21.8	0.0	0.00033	20.7	0.0	1.6	1	0	0	1	1	1	1	Restriction	endonuclease
DS	PF01916.17	gi|390938326|ref|YP_006402064.1|	-	4.6e-104	347.7	0.0	5.2e-104	347.5	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
DUF1743	PF08489.11	gi|390938327|ref|YP_006402065.1|	-	1.7e-39	134.5	0.0	2.9e-39	133.7	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
RNA_POL_M_15KD	PF02150.16	gi|390938327|ref|YP_006402065.1|	-	0.00049	19.9	1.3	0.0012	18.7	1.3	1.6	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.11	gi|390938327|ref|YP_006402065.1|	-	0.0033	17.3	2.4	0.0073	16.2	2.4	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HypA	PF01155.19	gi|390938327|ref|YP_006402065.1|	-	0.005	16.9	0.4	0.011	15.7	0.4	1.5	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
tRNA_anti-codon	PF01336.25	gi|390938327|ref|YP_006402065.1|	-	0.0084	16.1	0.0	0.14	12.1	0.0	2.2	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
MCM_OB	PF17207.3	gi|390938327|ref|YP_006402065.1|	-	0.26	11.2	5.3	0.89	9.4	0.0	2.7	2	1	1	3	3	3	0	MCM	OB	domain
zinc_ribbon_2	PF13240.6	gi|390938327|ref|YP_006402065.1|	-	0.7	9.7	4.5	9.1	6.2	0.2	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-TFIIB	PF13453.6	gi|390938327|ref|YP_006402065.1|	-	1.1	8.6	3.8	0.92	8.9	1.1	2.1	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Zn_Tnp_IS1595	PF12760.7	gi|390938327|ref|YP_006402065.1|	-	1.1	9.2	8.6	0.063	13.3	2.9	1.9	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Aminotran_1_2	PF00155.21	gi|390938328|ref|YP_006402066.1|	-	3.8e-48	164.5	0.0	4.6e-48	164.2	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|390938328|ref|YP_006402066.1|	-	0.017	13.7	0.0	0.025	13.1	0.0	1.1	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
PYC_OADA	PF02436.18	gi|390938329|ref|YP_006402067.1|	-	3.3e-53	180.4	0.0	5.9e-53	179.6	0.0	1.4	1	0	0	1	1	1	1	Conserved	carboxylase	domain
HMGL-like	PF00682.19	gi|390938329|ref|YP_006402067.1|	-	1.6e-40	139.3	0.0	2.1e-40	139.0	0.0	1.2	1	0	0	1	1	1	1	HMGL-like
HD_3	PF13023.6	gi|390938330|ref|YP_006402068.1|	-	6.5e-18	65.2	0.0	1.9e-17	63.7	0.0	1.7	1	1	0	1	1	1	1	HD	domain
HD_2	PF12917.7	gi|390938330|ref|YP_006402068.1|	-	2.4e-12	47.0	0.1	3.6e-12	46.4	0.1	1.2	1	0	0	1	1	1	1	HD	containing	hydrolase-like	enzyme
HD	PF01966.22	gi|390938330|ref|YP_006402068.1|	-	0.00022	21.4	0.3	0.0012	19.0	0.3	2.2	1	1	0	1	1	1	1	HD	domain
2-Hacid_dh	PF00389.30	gi|390938330|ref|YP_006402068.1|	-	0.1	12.3	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
Peptidase_M55	PF04951.13	gi|390938331|ref|YP_006402069.1|	-	5.5e-89	298.1	0.0	6.2e-89	297.9	0.0	1.0	1	0	0	1	1	1	1	D-aminopeptidase
Creatininase	PF02633.14	gi|390938331|ref|YP_006402069.1|	-	0.092	12.2	0.0	0.14	11.6	0.0	1.3	1	0	0	1	1	1	0	Creatinine	amidohydrolase
gpW	PF02831.15	gi|390938331|ref|YP_006402069.1|	-	0.14	12.0	0.0	0.33	10.9	0.0	1.6	1	0	0	1	1	1	0	gpW
Rib_5-P_isom_A	PF06026.14	gi|390938332|ref|YP_006402070.1|	-	2.9e-48	163.8	0.0	3.4e-48	163.5	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
YdjM	PF04307.14	gi|390938333|ref|YP_006402071.1|	-	1e-17	64.0	11.2	2.4e-16	59.5	11.2	2.0	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Colicin_V	PF02674.16	gi|390938333|ref|YP_006402071.1|	-	2.8	7.9	10.6	0.18	11.8	3.5	2.2	1	1	1	2	2	2	0	Colicin	V	production	protein
SlyX	PF04102.12	gi|390938334|ref|YP_006402072.1|	-	0.00033	21.2	1.8	0.00057	20.5	1.8	1.4	1	0	0	1	1	1	1	SlyX
TMF_DNA_bd	PF12329.8	gi|390938334|ref|YP_006402072.1|	-	0.0013	18.7	5.9	0.0019	18.2	5.9	1.2	1	0	0	1	1	1	1	TATA	element	modulatory	factor	1	DNA	binding
Spc7	PF08317.11	gi|390938334|ref|YP_006402072.1|	-	0.0059	15.5	1.5	0.0086	15.0	1.5	1.1	1	0	0	1	1	1	1	Spc7	kinetochore	protein
Cast	PF10174.9	gi|390938334|ref|YP_006402072.1|	-	0.0072	14.6	3.2	0.01	14.1	3.2	1.1	1	0	0	1	1	1	1	RIM-binding	protein	of	the	cytomatrix	active	zone
YabA	PF06156.13	gi|390938334|ref|YP_006402072.1|	-	0.0076	16.9	2.2	0.013	16.2	2.2	1.3	1	0	0	1	1	1	1	Initiation	control	protein	YabA
TolA_bind_tri	PF16331.5	gi|390938334|ref|YP_006402072.1|	-	0.024	14.7	2.3	0.038	14.1	2.3	1.3	1	0	0	1	1	1	0	TolA	binding	protein	trimerisation
HAUS-augmin3	PF14932.6	gi|390938334|ref|YP_006402072.1|	-	0.024	14.2	0.8	0.034	13.7	0.8	1.1	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
DUF4201	PF13870.6	gi|390938334|ref|YP_006402072.1|	-	0.037	13.8	5.0	0.054	13.2	5.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
DivIC	PF04977.15	gi|390938334|ref|YP_006402072.1|	-	0.041	13.6	2.3	0.074	12.8	1.1	2.0	1	1	1	2	2	2	0	Septum	formation	initiator
RPW8	PF05659.11	gi|390938334|ref|YP_006402072.1|	-	0.065	12.9	0.3	0.12	12.1	0.3	1.4	1	0	0	1	1	1	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
ATG16	PF08614.11	gi|390938334|ref|YP_006402072.1|	-	0.088	13.0	3.3	0.13	12.4	3.3	1.1	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DUF1664	PF07889.12	gi|390938334|ref|YP_006402072.1|	-	0.1	12.6	0.6	0.19	11.8	0.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Fez1	PF06818.15	gi|390938334|ref|YP_006402072.1|	-	0.17	12.3	1.9	0.24	11.8	1.9	1.1	1	0	0	1	1	1	0	Fez1
Cu_amine_oxidN1	PF07833.11	gi|390938334|ref|YP_006402072.1|	-	0.2	12.2	1.2	0.65	10.5	0.1	2.3	2	0	0	2	2	2	0	Copper	amine	oxidase	N-terminal	domain
Uso1_p115_C	PF04871.13	gi|390938334|ref|YP_006402072.1|	-	0.62	10.4	4.3	0.96	9.8	4.3	1.2	1	0	0	1	1	1	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
DUF4094	PF13334.6	gi|390938334|ref|YP_006402072.1|	-	1.6	9.2	3.8	19	5.8	3.8	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4094)
AAA_26	PF13500.6	gi|390938335|ref|YP_006402073.1|	-	0.00013	21.9	0.0	0.00043	20.2	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
CbiA	PF01656.23	gi|390938335|ref|YP_006402073.1|	-	0.056	13.5	0.0	0.095	12.8	0.0	1.6	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
IF-2B	PF01008.17	gi|390938336|ref|YP_006402074.1|	-	9.4e-51	172.7	0.0	1.2e-50	172.3	0.0	1.1	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
IF-2B	PF01008.17	gi|390938337|ref|YP_006402075.1|	-	1.3e-87	293.7	0.1	1.5e-87	293.4	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
FeS_assembly_P	PF01883.19	gi|390938339|ref|YP_006402077.1|	-	1.2e-15	57.4	0.2	1.7e-15	56.9	0.2	1.3	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
tRNA-synt_2b	PF00587.25	gi|390938340|ref|YP_006402078.1|	-	1.3e-31	110.0	0.0	2.1e-31	109.3	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.22	gi|390938340|ref|YP_006402078.1|	-	7e-22	77.7	4.0	1.2e-21	76.9	4.0	1.4	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
DUF402	PF04167.13	gi|390938341|ref|YP_006402079.1|	-	1.8e-12	47.2	0.8	3.7e-12	46.3	0.8	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
RNase_E_G	PF10150.9	gi|390938341|ref|YP_006402079.1|	-	8.9e-07	28.6	0.0	1.4e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	Ribonuclease	E/G	family
Sigma70_r4	PF04545.16	gi|390938341|ref|YP_006402079.1|	-	4.6	6.9	6.1	9.7	5.8	0.0	3.6	3	1	1	4	4	4	0	Sigma-70,	region	4
TrkA_N	PF02254.18	gi|390938343|ref|YP_006402081.1|	-	0.0013	19.0	0.1	0.0019	18.4	0.1	1.3	1	0	0	1	1	1	1	TrkA-N	domain
MS_channel	PF00924.18	gi|390938344|ref|YP_006402082.1|	-	7.8e-14	51.7	5.2	1e-13	51.3	5.2	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|390938344|ref|YP_006402082.1|	-	0.0032	17.4	1.2	0.0032	17.4	1.2	2.8	3	0	0	3	3	3	1	Conserved	TM	helix
Lum_binding	PF00677.17	gi|390938344|ref|YP_006402082.1|	-	0.1	12.6	0.0	0.2	11.7	0.0	1.6	1	0	0	1	1	1	0	Lumazine	binding	domain
Colicin_V	PF02674.16	gi|390938344|ref|YP_006402082.1|	-	0.65	10.0	9.8	0.11	12.4	2.5	2.2	1	1	1	2	2	2	0	Colicin	V	production	protein
Pox_P21	PF05313.12	gi|390938344|ref|YP_006402082.1|	-	1.5	8.4	8.0	2.6	7.6	8.0	1.4	1	0	0	1	1	1	0	Poxvirus	P21	membrane	protein
DUF2614	PF11023.8	gi|390938344|ref|YP_006402082.1|	-	2.5	8.2	8.4	0.29	11.2	3.4	1.9	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
DUF2964	PF11177.8	gi|390938344|ref|YP_006402082.1|	-	6.5	7.0	10.6	0.53	10.5	5.2	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2964)
MFS_1	PF07690.16	gi|390938345|ref|YP_006402083.1|	-	8.9e-10	38.0	29.2	1.1e-09	37.7	29.2	1.2	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
EamA	PF00892.20	gi|390938346|ref|YP_006402084.1|	-	6e-16	58.9	32.9	9.3e-09	35.6	11.4	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
Band_7	PF01145.25	gi|390938347|ref|YP_006402085.1|	-	9.1e-38	130.0	0.7	1.2e-37	129.7	0.7	1.1	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|390938347|ref|YP_006402085.1|	-	0.0017	18.1	0.1	0.003	17.3	0.1	1.5	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
ProSAAS	PF07259.12	gi|390938347|ref|YP_006402085.1|	-	0.0067	16.4	0.5	0.011	15.7	0.5	1.3	1	0	0	1	1	1	1	ProSAAS	precursor
NfeD	PF01957.18	gi|390938348|ref|YP_006402086.1|	-	1.7e-08	34.7	0.9	7.2e-08	32.7	0.9	2.1	1	0	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
CLP_protease	PF00574.23	gi|390938348|ref|YP_006402086.1|	-	0.00027	20.9	0.1	0.00042	20.3	0.1	1.4	1	0	0	1	1	1	1	Clp	protease
SDH_sah	PF01972.16	gi|390938348|ref|YP_006402086.1|	-	0.02	13.9	0.3	0.052	12.5	0.1	1.7	2	0	0	2	2	2	0	Serine	dehydrogenase	proteinase
DUF4127	PF13552.6	gi|390938348|ref|YP_006402086.1|	-	0.22	10.1	0.0	0.33	9.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4127)
DUF2139	PF09910.9	gi|390938349|ref|YP_006402087.1|	-	9.3e-156	518.2	0.0	1.1e-155	518.0	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2139)
AAA_3	PF07726.11	gi|390938350|ref|YP_006402088.1|	-	2e-63	212.1	0.1	3.2e-63	211.4	0.1	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|390938350|ref|YP_006402088.1|	-	8.4e-20	70.4	0.2	2e-19	69.2	0.2	1.7	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|390938350|ref|YP_006402088.1|	-	9.3e-18	64.6	0.0	4.8e-17	62.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|390938350|ref|YP_006402088.1|	-	4.9e-08	33.5	0.0	1.3e-07	32.1	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|390938350|ref|YP_006402088.1|	-	9.5e-07	28.7	0.1	1.3e-05	25.0	0.1	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|390938350|ref|YP_006402088.1|	-	5.7e-06	25.9	0.4	0.081	12.3	0.1	2.2	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
MCM	PF00493.23	gi|390938350|ref|YP_006402088.1|	-	7.1e-06	25.3	0.0	4.1e-05	22.8	0.0	2.2	1	1	0	1	1	1	1	MCM	P-loop	domain
RuvB_N	PF05496.12	gi|390938350|ref|YP_006402088.1|	-	0.00017	21.3	0.1	0.004	16.9	0.1	2.4	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
DUF4548	PF15081.6	gi|390938350|ref|YP_006402088.1|	-	0.011	15.5	0.0	0.11	12.3	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4548)
AAA_16	PF13191.6	gi|390938350|ref|YP_006402088.1|	-	0.059	13.7	0.1	0.94	9.8	0.1	2.3	1	1	0	2	2	2	0	AAA	ATPase	domain
DUF58	PF01882.18	gi|390938351|ref|YP_006402089.1|	-	3e-15	56.3	0.1	5.9e-15	55.3	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
Deltameth_res	PF16020.5	gi|390938353|ref|YP_006402091.1|	-	1.4	8.9	5.1	0.53	10.2	0.7	2.0	1	1	1	2	2	2	0	Deltamethrin	resistance
Apq12	PF12716.7	gi|390938353|ref|YP_006402091.1|	-	4.5	7.3	12.6	7.4	6.6	3.8	2.1	2	0	0	2	2	2	0	Nuclear	pore	assembly	and	biogenesis
Lactamase_B_2	PF12706.7	gi|390938354|ref|YP_006402092.1|	-	4e-05	23.2	0.1	7.2e-05	22.4	0.1	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|390938354|ref|YP_006402092.1|	-	0.00045	20.1	0.0	0.00089	19.2	0.0	1.6	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DHH	PF01368.20	gi|390938354|ref|YP_006402092.1|	-	0.0019	18.4	0.4	0.03	14.6	0.0	2.2	2	0	0	2	2	2	1	DHH	family
Vps23_core	PF09454.10	gi|390938354|ref|YP_006402092.1|	-	0.12	12.3	0.1	0.24	11.4	0.1	1.4	1	0	0	1	1	1	0	Vps23	core	domain
Lactamase_B	PF00753.27	gi|390938354|ref|YP_006402092.1|	-	0.17	11.8	6.5	1.2	9.1	6.5	2.2	1	1	0	1	1	1	0	Metallo-beta-lactamase	superfamily
Pyr_redox_2	PF07992.14	gi|390938355|ref|YP_006402093.1|	-	1e-48	166.1	2.8	1.4e-48	165.7	2.8	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|390938355|ref|YP_006402093.1|	-	8e-19	68.0	2.0	4.7e-16	59.1	0.3	2.8	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|390938355|ref|YP_006402093.1|	-	2.6e-09	36.8	1.5	2.9e-07	30.0	0.4	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|390938355|ref|YP_006402093.1|	-	7.2e-07	28.3	1.0	0.0042	15.8	0.0	3.0	3	0	0	3	3	3	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|390938355|ref|YP_006402093.1|	-	2.2e-06	27.3	0.7	0.0027	17.1	0.2	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|390938355|ref|YP_006402093.1|	-	5.4e-06	26.6	0.0	1.6e-05	25.2	0.0	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
FAD_binding_2	PF00890.24	gi|390938355|ref|YP_006402093.1|	-	0.0003	20.0	3.1	0.00056	19.1	0.1	2.6	2	1	0	3	3	3	1	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|390938355|ref|YP_006402093.1|	-	0.00031	19.7	1.0	0.0099	14.8	0.1	2.4	2	0	0	2	2	2	1	Tryptophan	halogenase
GIDA	PF01134.22	gi|390938355|ref|YP_006402093.1|	-	0.00041	19.6	7.1	0.031	13.4	0.1	3.6	2	1	2	4	4	4	1	Glucose	inhibited	division	protein	A
DAO	PF01266.24	gi|390938355|ref|YP_006402093.1|	-	0.0012	18.6	9.6	0.29	10.7	0.1	3.8	3	1	0	4	4	4	2	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.6	gi|390938355|ref|YP_006402093.1|	-	0.0012	18.1	0.1	0.043	13.0	0.0	2.1	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_9	PF13454.6	gi|390938355|ref|YP_006402093.1|	-	0.0019	18.2	1.5	0.49	10.4	0.0	3.4	3	1	1	4	4	4	1	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|390938355|ref|YP_006402093.1|	-	0.0021	17.2	4.5	0.049	12.7	0.2	3.0	2	1	1	3	3	3	1	Lycopene	cyclase	protein
Thi4	PF01946.17	gi|390938355|ref|YP_006402093.1|	-	0.0086	15.3	1.0	0.037	13.3	0.0	2.4	2	1	1	3	3	3	1	Thi4	family
NAD_binding_8	PF13450.6	gi|390938355|ref|YP_006402093.1|	-	0.017	15.3	0.1	1.1	9.5	0.0	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
CysG_dimeriser	PF10414.9	gi|390938355|ref|YP_006402093.1|	-	0.045	13.5	0.1	0.09	12.5	0.1	1.4	1	0	0	1	1	1	0	Sirohaem	synthase	dimerisation	region
Amino_oxidase	PF01593.24	gi|390938355|ref|YP_006402093.1|	-	0.066	12.5	0.1	0.15	11.3	0.1	1.5	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
MFS_1	PF07690.16	gi|390938356|ref|YP_006402094.1|	-	0.0023	16.9	1.5	0.0024	16.8	1.5	1.0	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
TMEM238	PF15125.6	gi|390938356|ref|YP_006402094.1|	-	0.93	9.7	6.1	1.6	9.0	6.1	1.5	1	0	0	1	1	1	0	TMEM238	protein	family
MFS_1	PF07690.16	gi|390938357|ref|YP_006402095.1|	-	1.2e-13	50.8	36.7	1.6e-13	50.4	36.7	1.1	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|390938357|ref|YP_006402095.1|	-	0.0013	17.3	10.3	0.0025	16.3	10.3	1.5	1	1	0	1	1	1	1	Transmembrane	secretion	effector
ABC_tran	PF00005.27	gi|390938358|ref|YP_006402096.1|	-	3e-28	99.0	0.0	5.2e-28	98.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938358|ref|YP_006402096.1|	-	9.5e-15	55.2	0.8	4.5e-10	39.8	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|390938358|ref|YP_006402096.1|	-	1.3e-08	35.4	0.1	2.9e-08	34.3	0.1	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
Rad17	PF03215.15	gi|390938358|ref|YP_006402096.1|	-	0.00028	20.9	0.0	0.00052	20.0	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|390938358|ref|YP_006402096.1|	-	0.002	17.8	0.0	0.0041	16.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|390938358|ref|YP_006402096.1|	-	0.0045	17.4	0.0	0.0082	16.5	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|390938358|ref|YP_006402096.1|	-	0.0047	16.7	0.0	3.4	7.3	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
MukB	PF04310.12	gi|390938358|ref|YP_006402096.1|	-	0.0062	16.4	0.0	0.0097	15.7	0.0	1.3	1	0	0	1	1	1	1	MukB	N-terminal
AAA	PF00004.29	gi|390938358|ref|YP_006402096.1|	-	0.035	14.5	0.2	0.11	12.9	0.2	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SRP54	PF00448.22	gi|390938358|ref|YP_006402096.1|	-	0.04	13.5	0.1	0.064	12.9	0.1	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.6	gi|390938358|ref|YP_006402096.1|	-	0.045	14.0	0.1	0.2	11.9	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|390938358|ref|YP_006402096.1|	-	0.05	13.5	0.3	1.9	8.4	0.0	2.8	3	0	0	3	3	3	0	NTPase
AAA_23	PF13476.6	gi|390938358|ref|YP_006402096.1|	-	0.08	13.4	0.3	0.13	12.8	0.3	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|390938358|ref|YP_006402096.1|	-	0.083	13.4	0.1	0.29	11.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|390938358|ref|YP_006402096.1|	-	0.1	12.3	0.0	0.38	10.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|390938358|ref|YP_006402096.1|	-	0.11	12.3	0.0	0.43	10.3	0.0	1.9	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
TsaE	PF02367.17	gi|390938358|ref|YP_006402096.1|	-	0.18	11.8	0.0	0.46	10.5	0.0	1.7	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
SMC_N	PF02463.19	gi|390938358|ref|YP_006402096.1|	-	0.23	10.9	0.0	22	4.4	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
BCA_ABC_TP_C	PF12399.8	gi|390938358|ref|YP_006402096.1|	-	4.1	7.4	6.2	0.85	9.6	0.2	2.7	3	0	0	3	3	3	0	Branched-chain	amino	acid	ATP-binding	cassette	transporter
ABC2_membrane_3	PF12698.7	gi|390938359|ref|YP_006402097.1|	-	0.0017	17.5	15.4	0.0017	17.5	15.4	1.8	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
PEP_hydrolase	PF09370.10	gi|390938359|ref|YP_006402097.1|	-	0.099	11.9	0.1	0.15	11.3	0.1	1.2	1	0	0	1	1	1	0	Phosphoenolpyruvate	hydrolase-like
DUF2070	PF09843.9	gi|390938359|ref|YP_006402097.1|	-	0.68	8.2	14.7	0.43	8.8	13.3	1.4	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
ABC2_membrane	PF01061.24	gi|390938360|ref|YP_006402098.1|	-	3e-05	23.6	22.0	5.6e-05	22.7	22.0	1.4	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|390938360|ref|YP_006402098.1|	-	6.3	5.8	30.1	1.3	8.1	22.2	2.0	1	1	1	2	2	2	0	ABC-2	family	transporter	protein
CMD	PF02627.20	gi|390938361|ref|YP_006402099.1|	-	3.4e-19	68.7	0.1	4.3e-19	68.4	0.1	1.1	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
Glyco_hydro_1	PF00232.18	gi|390938362|ref|YP_006402100.1|	-	5.9e-85	285.4	8.0	5.8e-84	282.1	8.0	2.0	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	1
Glyco_hydro_42	PF02449.15	gi|390938362|ref|YP_006402100.1|	-	0.00032	20.1	0.0	0.0007	19.0	0.0	1.5	1	0	0	1	1	1	1	Beta-galactosidase
Cellulase	PF00150.18	gi|390938362|ref|YP_006402100.1|	-	0.00032	20.2	0.1	0.00051	19.6	0.1	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
Glyco_hydro_10	PF00331.20	gi|390938362|ref|YP_006402100.1|	-	0.025	13.7	0.1	1.4	8.0	0.2	2.3	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	10
CBS	PF00571.28	gi|390938363|ref|YP_006402101.1|	-	3.5e-33	113.8	3.2	1.2e-16	60.9	0.2	2.1	2	0	0	2	2	2	2	CBS	domain
TrmO	PF01980.16	gi|390938364|ref|YP_006402102.1|	-	1.5e-30	105.9	0.0	2.2e-30	105.3	0.0	1.2	1	0	0	1	1	1	1	tRNA-methyltransferase	O
MerR-DNA-bind	PF09278.11	gi|390938364|ref|YP_006402102.1|	-	0.012	16.2	0.0	0.56	10.8	0.0	2.4	2	0	0	2	2	2	0	MerR,	DNA	binding
GalP_UDP_transf	PF01087.22	gi|390938365|ref|YP_006402103.1|	-	1.2e-19	71.5	0.0	1.5e-18	67.9	0.0	2.3	1	1	0	1	1	1	1	Galactose-1-phosphate	uridyl	transferase,	N-terminal	domain
GalP_UDP_tr_C	PF02744.17	gi|390938365|ref|YP_006402103.1|	-	1.1e-14	54.5	0.0	1.7e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	Galactose-1-phosphate	uridyl	transferase,	C-terminal	domain
DUF4931	PF16285.5	gi|390938365|ref|YP_006402103.1|	-	2e-07	30.6	0.0	1.1e-06	28.2	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4931)
DcpS_C	PF11969.8	gi|390938365|ref|YP_006402103.1|	-	3.5e-07	30.7	0.3	1.1e-06	29.1	0.1	1.8	2	0	0	2	2	2	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
HIT	PF01230.23	gi|390938365|ref|YP_006402103.1|	-	2.1e-05	25.2	0.1	0.0016	19.1	0.0	2.2	2	0	0	2	2	2	1	HIT	domain
DUF4921	PF16268.5	gi|390938365|ref|YP_006402103.1|	-	0.022	13.6	0.0	0.026	13.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4921)
GHMP_kinases_N	PF00288.26	gi|390938366|ref|YP_006402104.1|	-	4.1e-13	49.4	0.7	4.1e-13	49.4	0.7	2.4	2	1	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|390938366|ref|YP_006402104.1|	-	8.2e-13	48.5	0.0	2.5e-12	47.0	0.0	1.8	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.9	gi|390938366|ref|YP_006402104.1|	-	4.1e-11	42.3	0.1	1.1e-10	40.9	0.0	1.8	2	0	0	2	2	2	1	Galactokinase	galactose-binding	signature
Glyco_hydro_53	PF07745.13	gi|390938366|ref|YP_006402104.1|	-	0.21	10.5	0.0	0.28	10.1	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	53
Epimerase	PF01370.21	gi|390938367|ref|YP_006402105.1|	-	5.6e-53	179.9	0.1	7.4e-53	179.5	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|390938367|ref|YP_006402105.1|	-	8.5e-47	160.2	0.0	1e-46	159.9	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|390938367|ref|YP_006402105.1|	-	1.2e-20	73.7	0.2	1.4e-20	73.5	0.2	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|390938367|ref|YP_006402105.1|	-	8.6e-17	61.2	0.1	9.3e-16	57.8	0.1	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|390938367|ref|YP_006402105.1|	-	3.6e-15	55.8	0.0	4.6e-15	55.5	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|390938367|ref|YP_006402105.1|	-	1.4e-10	41.4	0.0	1.9e-10	40.9	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|390938367|ref|YP_006402105.1|	-	3.7e-10	39.4	0.0	9.3e-08	31.5	0.0	2.5	1	1	0	1	1	1	1	Male	sterility	protein
NmrA	PF05368.13	gi|390938367|ref|YP_006402105.1|	-	0.00067	19.3	0.3	0.0066	16.0	0.1	2.0	2	0	0	2	2	2	1	NmrA-like	family
KR	PF08659.10	gi|390938367|ref|YP_006402105.1|	-	0.0064	16.4	0.1	0.023	14.6	0.0	1.8	2	0	0	2	2	2	1	KR	domain
Sacchrp_dh_NADP	PF03435.18	gi|390938367|ref|YP_006402105.1|	-	0.091	13.0	0.0	0.16	12.3	0.0	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
PALP	PF00291.25	gi|390938368|ref|YP_006402106.1|	-	2.1e-42	145.5	0.0	4.3e-42	144.5	0.0	1.4	1	1	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
MgtE	PF01769.16	gi|390938369|ref|YP_006402107.1|	-	4.9e-21	75.4	31.7	7.2e-11	42.5	6.8	3.3	1	1	3	4	4	4	2	Divalent	cation	transporter
PhoU	PF01895.19	gi|390938370|ref|YP_006402108.1|	-	1.5e-06	28.6	0.4	0.05	14.1	0.0	2.6	2	0	0	2	2	2	2	PhoU	domain
TrkA_C	PF02080.21	gi|390938370|ref|YP_006402108.1|	-	0.012	15.4	0.0	2.8	7.8	0.0	2.6	2	0	0	2	2	2	0	TrkA-C	domain
PhoU_div	PF01865.16	gi|390938370|ref|YP_006402108.1|	-	0.014	14.7	0.9	0.21	10.9	0.1	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	DUF47
Kinesin_assoc	PF16183.5	gi|390938370|ref|YP_006402108.1|	-	0.039	14.1	0.1	0.069	13.3	0.1	1.3	1	0	0	1	1	1	0	Kinesin-associated
Sigma70_r4_2	PF08281.12	gi|390938370|ref|YP_006402108.1|	-	0.049	13.3	0.1	3	7.6	0.0	2.7	2	0	0	2	2	2	0	Sigma-70,	region	4
Pilin_N	PF07790.11	gi|390938371|ref|YP_006402109.1|	-	0.0013	19.6	7.2	0.0013	19.6	7.2	1.9	1	1	1	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
AsmA	PF05170.14	gi|390938371|ref|YP_006402109.1|	-	0.021	13.6	0.0	0.021	13.6	0.0	1.5	2	0	0	2	2	2	0	AsmA	family
Ribosomal_L21e	PF01157.18	gi|390938371|ref|YP_006402109.1|	-	0.12	12.3	0.2	5.1	7.0	0.1	2.2	1	1	0	2	2	2	0	Ribosomal	protein	L21e
PMT	PF02366.18	gi|390938374|ref|YP_006402112.1|	-	7.7e-08	32.2	19.2	9.5e-08	31.9	15.2	3.0	1	1	0	1	1	1	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT_4TMC	PF16192.5	gi|390938374|ref|YP_006402112.1|	-	0.00083	19.0	3.5	0.00083	19.0	3.5	2.0	2	0	0	2	2	2	1	C-terminal	four	TMM	region	of	protein-O-mannosyltransferase
ABC_tran	PF00005.27	gi|390938377|ref|YP_006402115.1|	-	1.4e-17	64.5	0.1	4.7e-17	62.8	0.0	1.8	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|390938377|ref|YP_006402115.1|	-	2.1e-07	31.1	0.3	0.00061	19.7	0.1	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|390938377|ref|YP_006402115.1|	-	0.00028	21.5	0.0	0.00037	21.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|390938377|ref|YP_006402115.1|	-	0.00081	18.2	0.0	0.0012	17.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|390938377|ref|YP_006402115.1|	-	0.003	18.0	0.0	0.0046	17.4	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|390938377|ref|YP_006402115.1|	-	0.0061	16.8	0.0	0.0097	16.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|390938377|ref|YP_006402115.1|	-	0.0086	16.0	0.0	0.013	15.5	0.0	1.4	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_29	PF13555.6	gi|390938377|ref|YP_006402115.1|	-	0.0093	15.7	0.1	0.02	14.6	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.12	gi|390938377|ref|YP_006402115.1|	-	0.014	15.3	0.0	0.023	14.6	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
SH3_3	PF08239.11	gi|390938377|ref|YP_006402115.1|	-	0.016	15.5	0.1	0.043	14.1	0.1	1.8	1	0	0	1	1	1	0	Bacterial	SH3	domain
SH3_1	PF00018.28	gi|390938377|ref|YP_006402115.1|	-	0.018	14.7	0.0	0.14	11.8	0.0	2.1	1	1	1	2	2	2	0	SH3	domain
TsaE	PF02367.17	gi|390938377|ref|YP_006402115.1|	-	0.018	15.0	0.5	0.21	11.6	0.1	2.3	1	1	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA	PF00004.29	gi|390938377|ref|YP_006402115.1|	-	0.038	14.4	0.0	0.091	13.2	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PIF1	PF05970.14	gi|390938377|ref|YP_006402115.1|	-	0.054	12.7	0.1	0.089	11.9	0.1	1.3	1	0	0	1	1	1	0	PIF1-like	helicase
RNA_helicase	PF00910.22	gi|390938377|ref|YP_006402115.1|	-	0.077	13.4	0.0	0.17	12.3	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
DLIC	PF05783.11	gi|390938377|ref|YP_006402115.1|	-	0.093	11.5	0.1	0.23	10.3	0.1	1.6	1	1	1	2	2	2	0	Dynein	light	intermediate	chain	(DLIC)
AAA_15	PF13175.6	gi|390938377|ref|YP_006402115.1|	-	0.11	12.2	0.1	0.19	11.4	0.1	1.4	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|390938377|ref|YP_006402115.1|	-	0.11	12.2	0.4	0.45	10.2	0.0	2.1	3	0	0	3	3	2	0	AAA	domain
AAA_24	PF13479.6	gi|390938377|ref|YP_006402115.1|	-	0.16	11.7	0.0	0.37	10.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF3584	PF12128.8	gi|390938377|ref|YP_006402115.1|	-	0.22	9.0	0.1	0.3	8.6	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
ABC_tran	PF00005.27	gi|390938378|ref|YP_006402116.1|	-	2.7e-09	37.6	0.0	3.2e-09	37.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
T2SSE	PF00437.20	gi|390938378|ref|YP_006402116.1|	-	0.0027	16.8	0.0	0.0036	16.4	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
DUF87	PF01935.17	gi|390938378|ref|YP_006402116.1|	-	0.003	17.7	0.3	0.0047	17.1	0.3	1.3	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
AAA_29	PF13555.6	gi|390938378|ref|YP_006402116.1|	-	0.003	17.3	0.1	0.0048	16.6	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|390938378|ref|YP_006402116.1|	-	0.0046	16.3	0.1	0.0065	15.8	0.1	1.2	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
AAA_28	PF13521.6	gi|390938378|ref|YP_006402116.1|	-	0.014	15.7	0.0	0.024	14.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|390938378|ref|YP_006402116.1|	-	0.037	13.8	0.1	0.057	13.1	0.1	1.2	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|390938378|ref|YP_006402116.1|	-	0.045	13.3	0.2	0.071	12.6	0.2	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_22	PF13401.6	gi|390938378|ref|YP_006402116.1|	-	0.059	13.6	0.0	0.081	13.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|390938378|ref|YP_006402116.1|	-	0.066	13.8	0.5	0.1	13.1	0.5	1.5	1	1	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.9	gi|390938378|ref|YP_006402116.1|	-	0.085	12.6	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_25	PF13481.6	gi|390938378|ref|YP_006402116.1|	-	0.098	12.2	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|390938378|ref|YP_006402116.1|	-	0.1	13.0	0.2	1.3	9.4	0.2	2.3	1	1	0	1	1	1	0	RNA	helicase
AAA_16	PF13191.6	gi|390938378|ref|YP_006402116.1|	-	0.11	12.9	0.5	0.12	12.8	0.5	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
Sigma54_activat	PF00158.26	gi|390938378|ref|YP_006402116.1|	-	0.16	11.7	0.1	0.25	11.1	0.1	1.2	1	0	0	1	1	1	0	Sigma-54	interaction	domain
CobU	PF02283.16	gi|390938378|ref|YP_006402116.1|	-	0.17	11.4	0.1	0.28	10.7	0.1	1.3	1	0	0	1	1	1	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
ATPase	PF06745.13	gi|390938378|ref|YP_006402116.1|	-	0.18	11.1	0.1	0.24	10.7	0.1	1.2	1	0	0	1	1	1	0	KaiC
DUF5453	PF17534.2	gi|390938379|ref|YP_006402117.1|	-	0.42	10.6	3.9	0.51	10.3	0.5	2.1	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5453)
Nitroreductase	PF00881.24	gi|390938380|ref|YP_006402118.1|	-	1.3e-29	103.4	1.5	4.5e-16	59.4	0.7	2.1	1	1	1	2	2	2	2	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|390938380|ref|YP_006402118.1|	-	8.4e-14	51.7	0.0	6.3e-05	22.6	0.0	3.0	2	1	1	3	3	3	3	Putative	TM	nitroreductase
PYC_OADA	PF02436.18	gi|390938380|ref|YP_006402118.1|	-	0.047	13.4	0.0	0.069	12.9	0.0	1.2	1	0	0	1	1	1	0	Conserved	carboxylase	domain
Melibiase_2_C	PF17450.2	gi|390938380|ref|YP_006402118.1|	-	0.15	12.3	0.0	0.24	11.7	0.0	1.3	1	0	0	1	1	1	0	Alpha	galactosidase	A	C-terminal	beta	sandwich	domain
Rhomboid	PF01694.22	gi|390938381|ref|YP_006402119.1|	-	5.3e-36	123.9	17.7	5.3e-36	123.9	17.7	1.8	2	0	0	2	2	2	1	Rhomboid	family
HTH_33	PF13592.6	gi|390938381|ref|YP_006402119.1|	-	0.011	15.4	0.1	0.026	14.2	0.1	1.6	1	0	0	1	1	1	0	Winged	helix-turn	helix
DUF2633	PF11119.8	gi|390938381|ref|YP_006402119.1|	-	0.98	9.4	8.5	0.93	9.4	1.3	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2633)
Alpha-amylase	PF00128.24	gi|390938382|ref|YP_006402120.1|	-	1.3e-64	219.0	0.0	2.5e-64	218.0	0.0	1.4	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Malt_amylase_C	PF16657.5	gi|390938382|ref|YP_006402120.1|	-	0.00033	20.7	0.0	0.00079	19.5	0.0	1.7	1	0	0	1	1	1	1	Maltogenic	Amylase,	C-terminal	domain
Alpha-amylase_C	PF02806.18	gi|390938382|ref|YP_006402120.1|	-	0.0017	18.8	0.0	0.0079	16.6	0.0	2.2	1	1	1	2	2	2	1	Alpha	amylase,	C-terminal	all-beta	domain
Glyco_hydro_70	PF02324.16	gi|390938382|ref|YP_006402120.1|	-	0.003	15.9	0.0	0.0048	15.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	70
Cation_efflux	PF01545.21	gi|390938383|ref|YP_006402121.1|	-	3.4e-44	151.0	15.0	3.9e-44	150.8	15.0	1.0	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|390938383|ref|YP_006402121.1|	-	8.2e-17	61.1	1.0	1.4e-16	60.4	1.0	1.4	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
SLATT_3	PF18184.1	gi|390938383|ref|YP_006402121.1|	-	0.46	10.6	4.6	0.39	10.8	3.0	1.7	1	1	1	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	3
DUF4395	PF14340.6	gi|390938383|ref|YP_006402121.1|	-	0.67	10.3	4.5	4.1	7.7	0.0	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4395)
TBP	PF00352.21	gi|390938384|ref|YP_006402122.1|	-	2.8e-55	184.2	0.1	6.1e-27	93.4	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|390938384|ref|YP_006402122.1|	-	6.6e-07	29.3	0.0	0.05	13.7	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
DUF4865	PF16157.5	gi|390938384|ref|YP_006402122.1|	-	0.046	13.7	0.0	0.17	11.8	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4865)
Spore_YhaL	PF14147.6	gi|390938384|ref|YP_006402122.1|	-	0.12	12.1	0.5	0.79	9.5	0.1	2.4	3	0	0	3	3	3	0	Sporulation	protein	YhaL
DUF2070	PF09843.9	gi|390938385|ref|YP_006402123.1|	-	5.5e-88	295.7	0.3	6.3e-88	295.5	0.3	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
ATP_bind_1	PF03029.17	gi|390938387|ref|YP_006402125.1|	-	3.9e-44	151.2	0.0	4.6e-44	151.0	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_24	PF13479.6	gi|390938387|ref|YP_006402125.1|	-	0.00023	20.9	0.0	0.00042	20.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
PduV-EutP	PF10662.9	gi|390938387|ref|YP_006402125.1|	-	0.00024	20.8	0.1	1.6	8.5	0.0	3.5	3	1	0	3	3	3	2	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_22	PF13401.6	gi|390938387|ref|YP_006402125.1|	-	0.0011	19.3	0.0	0.0015	18.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
cobW	PF02492.19	gi|390938387|ref|YP_006402125.1|	-	0.0034	17.0	0.0	0.029	14.0	0.0	2.0	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_16	PF13191.6	gi|390938387|ref|YP_006402125.1|	-	0.0043	17.5	0.0	0.0052	17.2	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|390938387|ref|YP_006402125.1|	-	0.0054	16.7	0.0	0.046	13.6	0.0	2.1	1	1	0	1	1	1	1	NTPase
AAA_30	PF13604.6	gi|390938387|ref|YP_006402125.1|	-	0.019	14.7	0.0	0.035	13.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|390938387|ref|YP_006402125.1|	-	0.044	13.7	2.3	1.7	8.6	0.1	3.7	3	2	2	5	5	5	0	RsgA	GTPase
AAA_29	PF13555.6	gi|390938387|ref|YP_006402125.1|	-	0.055	13.2	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
T2SSE	PF00437.20	gi|390938387|ref|YP_006402125.1|	-	0.061	12.4	0.1	0.099	11.7	0.1	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Ras	PF00071.22	gi|390938387|ref|YP_006402125.1|	-	0.084	12.5	0.0	7.5	6.1	0.0	2.5	3	0	0	3	3	3	0	Ras	family
NACHT	PF05729.12	gi|390938387|ref|YP_006402125.1|	-	0.097	12.6	0.0	0.29	11.1	0.0	1.8	2	0	0	2	2	2	0	NACHT	domain
MMR_HSR1	PF01926.23	gi|390938387|ref|YP_006402125.1|	-	0.12	12.5	0.0	1.2	9.3	0.0	2.2	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
MeaB	PF03308.16	gi|390938387|ref|YP_006402125.1|	-	0.15	11.1	0.0	0.62	9.0	0.0	1.9	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
CLP1_P	PF16575.5	gi|390938387|ref|YP_006402125.1|	-	0.16	11.8	0.0	0.79	9.5	0.0	1.9	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA	PF00004.29	gi|390938387|ref|YP_006402125.1|	-	0.17	12.3	0.0	0.29	11.6	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Gtr1_RagA	PF04670.12	gi|390938387|ref|YP_006402125.1|	-	0.17	11.2	0.0	5.1	6.4	0.0	2.0	2	0	0	2	2	2	0	Gtr1/RagA	G	protein	conserved	region
AAA_28	PF13521.6	gi|390938387|ref|YP_006402125.1|	-	0.18	12.0	0.0	0.28	11.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|390938387|ref|YP_006402125.1|	-	0.19	12.3	0.0	0.3	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|390938387|ref|YP_006402125.1|	-	0.23	11.6	0.0	0.4	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DNA_ligase_A_M	PF01068.21	gi|390938388|ref|YP_006402126.1|	-	3.4e-61	206.5	0.1	4.8e-61	206.0	0.1	1.2	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.14	gi|390938388|ref|YP_006402126.1|	-	6.7e-41	140.5	0.1	1.4e-40	139.4	0.1	1.5	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.15	gi|390938388|ref|YP_006402126.1|	-	1.2e-26	93.2	0.0	4.6e-26	91.3	0.0	2.0	2	0	0	2	2	2	1	ATP	dependent	DNA	ligase	C	terminal	region
RNA_ligase	PF09414.10	gi|390938388|ref|YP_006402126.1|	-	0.0001	22.7	0.4	0.00019	21.8	0.4	1.4	1	0	0	1	1	1	1	RNA	ligase
DNA_ligase_OB_2	PF14743.6	gi|390938388|ref|YP_006402126.1|	-	0.0013	18.7	0.4	0.11	12.5	0.0	3.0	3	0	0	3	3	3	1	DNA	ligase	OB-like	domain
GGGtGRT	PF14057.6	gi|390938388|ref|YP_006402126.1|	-	0.13	11.2	0.0	0.47	9.4	0.0	1.8	2	0	0	2	2	2	0	GGGtGRT	protein
Lon_C	PF05362.13	gi|390938389|ref|YP_006402127.1|	-	4.7e-07	29.5	0.3	9e-07	28.6	0.3	1.4	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
UDG	PF03167.19	gi|390938390|ref|YP_006402128.1|	-	3.2e-46	157.1	0.0	4.2e-46	156.8	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
GtrA	PF04138.14	gi|390938391|ref|YP_006402129.1|	-	1.3e-18	67.3	5.1	2e-18	66.7	5.1	1.3	1	0	0	1	1	1	1	GtrA-like	protein
DUF5622	PF18533.1	gi|390938392|ref|YP_006402130.1|	-	1.9e-29	101.6	0.4	2.1e-29	101.5	0.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5622)
DUF553	PF04473.12	gi|390938394|ref|YP_006402132.1|	-	2.1e-21	76.1	3.8	3.4e-21	75.4	0.2	2.6	2	1	0	2	2	2	1	Transglutaminase-like	domain
SBP_bac_5	PF00496.22	gi|390938395|ref|YP_006402133.1|	-	6.4e-56	189.9	13.8	2.4e-42	145.3	5.3	2.6	2	1	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Imm48	PF15574.6	gi|390938395|ref|YP_006402133.1|	-	0.065	13.0	0.0	0.64	9.8	0.0	2.4	2	0	0	2	2	2	0	Immunity	protein	48
Flp_N	PF03930.14	gi|390938395|ref|YP_006402133.1|	-	0.093	12.7	0.0	0.2	11.6	0.0	1.5	1	0	0	1	1	1	0	Recombinase	Flp	protein	N-terminus
HemX	PF04375.14	gi|390938395|ref|YP_006402133.1|	-	0.18	11.1	0.1	0.31	10.3	0.1	1.3	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
BPD_transp_1	PF00528.22	gi|390938396|ref|YP_006402134.1|	-	4.6e-39	134.1	18.2	4.6e-39	134.1	18.2	2.3	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Dicistro_VP4	PF11492.8	gi|390938396|ref|YP_006402134.1|	-	0.096	12.7	0.4	2.3	8.2	0.1	2.6	2	0	0	2	2	2	0	Cricket	paralysis	virus,	VP4
BPD_transp_1	PF00528.22	gi|390938397|ref|YP_006402135.1|	-	7.4e-32	110.6	14.7	7.4e-32	110.6	14.7	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|390938397|ref|YP_006402135.1|	-	4.3e-05	23.4	0.6	4.3e-05	23.4	0.6	3.5	4	0	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
TraQ	PF09679.10	gi|390938397|ref|YP_006402135.1|	-	0.11	12.4	3.5	1.1	9.3	0.2	2.9	2	0	0	2	2	2	0	Type-F	conjugative	transfer	system	pilin	chaperone	(TraQ)
ABC_tran	PF00005.27	gi|390938398|ref|YP_006402136.1|	-	6.8e-26	91.4	0.0	9.7e-26	90.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|390938398|ref|YP_006402136.1|	-	1.4e-21	76.8	0.3	2.5e-21	75.9	0.3	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|390938398|ref|YP_006402136.1|	-	2.1e-08	34.3	0.2	8.2e-06	25.8	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|390938398|ref|YP_006402136.1|	-	3.6e-05	24.1	0.4	0.0003	21.1	0.4	2.0	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|390938398|ref|YP_006402136.1|	-	6.2e-05	22.5	0.0	0.00014	21.4	0.0	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|390938398|ref|YP_006402136.1|	-	0.0061	16.3	0.1	2.5	7.7	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_16	PF13191.6	gi|390938398|ref|YP_006402136.1|	-	0.016	15.6	0.1	0.023	15.1	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|390938398|ref|YP_006402136.1|	-	0.032	14.6	0.0	2.3	8.7	0.0	2.7	2	1	1	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|390938398|ref|YP_006402136.1|	-	0.049	13.4	0.0	0.081	12.7	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RNA_helicase	PF00910.22	gi|390938398|ref|YP_006402136.1|	-	0.12	12.8	0.0	0.24	11.8	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
DUF87	PF01935.17	gi|390938398|ref|YP_006402136.1|	-	0.13	12.3	0.1	0.65	10.0	0.0	2.0	2	1	1	3	3	3	0	Helicase	HerA,	central	domain
AAA_25	PF13481.6	gi|390938398|ref|YP_006402136.1|	-	0.21	11.2	0.2	5.2	6.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|390938399|ref|YP_006402137.1|	-	1.5e-35	122.7	0.0	2e-35	122.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|390938399|ref|YP_006402137.1|	-	3.8e-20	72.2	0.1	6.8e-20	71.3	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|390938399|ref|YP_006402137.1|	-	1.6e-09	38.0	1.2	2.9e-06	27.3	0.2	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|390938399|ref|YP_006402137.1|	-	2.5e-05	24.6	0.2	8.7e-05	22.8	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|390938399|ref|YP_006402137.1|	-	0.00015	21.3	0.1	0.00067	19.2	0.1	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Mg_chelatase	PF01078.21	gi|390938399|ref|YP_006402137.1|	-	0.0045	16.4	0.0	0.012	15.0	0.0	1.7	1	1	1	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
ATP-synt_ab	PF00006.25	gi|390938399|ref|YP_006402137.1|	-	0.023	14.3	0.0	0.029	14.0	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
SbcCD_C	PF13558.6	gi|390938399|ref|YP_006402137.1|	-	0.024	14.8	0.0	0.41	10.9	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_25	PF13481.6	gi|390938399|ref|YP_006402137.1|	-	0.031	13.9	0.1	6.5	6.3	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|390938399|ref|YP_006402137.1|	-	0.046	14.1	0.1	0.15	12.5	0.1	1.8	1	1	1	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|390938399|ref|YP_006402137.1|	-	0.053	12.9	0.1	2.4	7.5	0.0	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
ATPase	PF06745.13	gi|390938399|ref|YP_006402137.1|	-	0.094	12.0	0.3	0.9	8.8	0.1	2.1	2	0	0	2	2	2	0	KaiC
AAA_16	PF13191.6	gi|390938399|ref|YP_006402137.1|	-	0.11	12.8	0.9	0.23	11.8	0.9	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|390938399|ref|YP_006402137.1|	-	0.12	12.2	0.1	0.2	11.5	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_5	PF07728.14	gi|390938399|ref|YP_006402137.1|	-	0.13	12.2	0.2	1.6	8.8	0.2	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
SRP54	PF00448.22	gi|390938399|ref|YP_006402137.1|	-	0.17	11.5	0.0	0.24	11.0	0.0	1.2	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_13	PF13166.6	gi|390938399|ref|YP_006402137.1|	-	0.18	10.4	0.1	1.3	7.6	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
MFS_1	PF07690.16	gi|390938401|ref|YP_006402139.1|	-	6.1e-32	110.9	29.0	6.1e-32	110.9	29.0	1.6	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|390938401|ref|YP_006402139.1|	-	3.6e-10	39.3	20.1	4.1e-05	22.6	7.2	3.0	3	0	0	3	3	3	2	Sugar	(and	other)	transporter
DUF4131	PF13567.6	gi|390938401|ref|YP_006402139.1|	-	1.9	8.1	12.5	0.2	11.3	0.2	3.6	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF4131)
DUF131	PF01998.17	gi|390938402|ref|YP_006402140.1|	-	6.9e-14	51.2	6.2	6.9e-14	51.2	6.2	2.3	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF131
SUR7	PF06687.12	gi|390938402|ref|YP_006402140.1|	-	0.057	13.0	3.4	0.079	12.6	3.4	1.3	1	1	0	1	1	1	0	SUR7/PalI	family
EI24	PF07264.11	gi|390938402|ref|YP_006402140.1|	-	0.34	11.1	8.1	0.39	11.0	8.1	1.1	1	0	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
HRG	PF16954.5	gi|390938402|ref|YP_006402140.1|	-	0.35	11.3	11.9	1	9.8	2.9	2.3	2	0	0	2	2	2	0	Haem-transporter,	endosomal/lysosomal,	haem-responsive	gene
zf-LITAF-like	PF10601.9	gi|390938402|ref|YP_006402140.1|	-	0.63	10.3	3.0	1.7	9.0	0.0	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
DUF2371	PF10177.9	gi|390938402|ref|YP_006402140.1|	-	2.6	8.2	5.6	0.66	10.2	2.6	1.5	1	1	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2371)
DUF4064	PF13273.6	gi|390938402|ref|YP_006402140.1|	-	4.3	7.7	14.7	4.2	7.7	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
DUF1218	PF06749.12	gi|390938402|ref|YP_006402140.1|	-	5.6	7.6	11.0	6.8	7.3	0.8	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1218)
SfLAP	PF11139.8	gi|390938402|ref|YP_006402140.1|	-	9.8	5.6	15.5	0.34	10.3	5.0	2.0	1	1	1	2	2	2	0	Sap,	sulfolipid-1-addressing	protein
DUF131	PF01998.17	gi|390938403|ref|YP_006402141.1|	-	4.6e-06	26.2	11.9	0.00066	19.3	1.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	DUF131
DUF4282	PF14110.6	gi|390938403|ref|YP_006402141.1|	-	0.025	15.3	5.0	0.025	15.3	5.0	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4282)
DUF4199	PF13858.6	gi|390938403|ref|YP_006402141.1|	-	0.041	14.3	5.3	0.041	14.3	5.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4199)
HILPDA	PF15220.6	gi|390938403|ref|YP_006402141.1|	-	0.16	12.1	0.5	0.16	12.1	0.5	1.6	2	0	0	2	2	2	0	Hypoxia-inducible	lipid	droplet-associated
LrgA	PF03788.14	gi|390938403|ref|YP_006402141.1|	-	0.29	11.1	8.8	0.41	10.6	8.8	1.2	1	0	0	1	1	1	0	LrgA	family
CDP-OH_P_transf	PF01066.21	gi|390938403|ref|YP_006402141.1|	-	0.31	11.9	4.8	0.73	10.6	4.8	1.7	1	1	0	1	1	1	0	CDP-alcohol	phosphatidyltransferase
Pox_A14	PF05767.12	gi|390938403|ref|YP_006402141.1|	-	0.34	11.1	8.9	0.33	11.1	2.9	2.2	1	1	1	2	2	2	0	Poxvirus	virion	envelope	protein	A14
DUF3974	PF13120.6	gi|390938403|ref|YP_006402141.1|	-	0.6	10.2	0.1	0.6	10.2	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3974)
DUF3273	PF11677.8	gi|390938403|ref|YP_006402141.1|	-	1	8.6	7.3	1.6	8.0	7.4	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3273)
TssN	PF17555.2	gi|390938403|ref|YP_006402141.1|	-	1.2	8.5	8.2	0.71	9.2	2.7	2.0	2	0	0	2	2	2	0	Type	VI	secretion	system,	TssN
Comm	PF15957.5	gi|390938403|ref|YP_006402141.1|	-	1.4	9.2	3.8	1.7	9.0	1.5	2.0	2	0	0	2	2	2	0	Commissureless
SPC12	PF06645.13	gi|390938403|ref|YP_006402141.1|	-	2.7	8.1	7.9	0.23	11.6	1.3	2.0	1	1	0	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
Pyr_redox_2	PF07992.14	gi|390938404|ref|YP_006402142.1|	-	1.1e-62	211.9	2.8	1.5e-62	211.5	2.8	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|390938404|ref|YP_006402142.1|	-	1.1e-21	77.1	6.8	1e-19	70.8	0.6	3.0	3	0	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|390938404|ref|YP_006402142.1|	-	2.9e-19	69.4	0.1	1.8e-18	66.8	0.0	2.3	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|390938404|ref|YP_006402142.1|	-	1.5e-14	53.9	1.8	2.2e-13	50.1	1.8	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|390938404|ref|YP_006402142.1|	-	1.2e-06	27.5	8.8	0.00051	18.8	0.1	3.7	3	1	1	4	4	4	2	HI0933-like	protein
DAO	PF01266.24	gi|390938404|ref|YP_006402142.1|	-	3.9e-06	26.7	15.5	0.026	14.1	0.0	3.9	3	1	1	4	4	4	3	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|390938404|ref|YP_006402142.1|	-	1.3e-05	24.6	7.3	0.17	11.1	0.1	3.1	2	1	1	3	3	3	2	FAD	binding	domain
GIDA	PF01134.22	gi|390938404|ref|YP_006402142.1|	-	1.6e-05	24.2	7.6	2.2e-05	23.7	0.4	2.9	2	1	1	3	3	3	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|390938404|ref|YP_006402142.1|	-	5.5e-05	22.7	0.4	5.5e-05	22.7	0.4	1.6	2	0	0	2	2	1	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.18	gi|390938404|ref|YP_006402142.1|	-	8.4e-05	22.5	1.8	0.021	14.7	0.1	2.5	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Thi4	PF01946.17	gi|390938404|ref|YP_006402142.1|	-	8.4e-05	21.9	4.3	0.00034	19.9	0.6	2.9	2	1	1	3	3	3	1	Thi4	family
FAD_binding_2	PF00890.24	gi|390938404|ref|YP_006402142.1|	-	0.00014	21.1	1.3	0.00014	21.1	1.3	3.2	2	1	1	3	3	3	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|390938404|ref|YP_006402142.1|	-	0.00035	20.8	2.5	0.034	14.4	0.3	2.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.6	gi|390938404|ref|YP_006402142.1|	-	0.0026	18.2	1.0	0.35	11.3	0.1	2.4	2	0	0	2	2	2	1	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|390938404|ref|YP_006402142.1|	-	0.0063	15.8	1.7	0.0064	15.8	0.1	1.8	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Amino_oxidase	PF01593.24	gi|390938404|ref|YP_006402142.1|	-	0.011	15.1	0.4	0.028	13.7	0.0	1.7	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
NAD_binding_9	PF13454.6	gi|390938404|ref|YP_006402142.1|	-	0.032	14.2	0.0	0.032	14.2	0.0	3.3	3	1	0	3	3	3	0	FAD-NAD(P)-binding
PhoU_div	PF01865.16	gi|390938404|ref|YP_006402142.1|	-	0.05	12.9	0.1	0.96	8.7	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF47
Spermine_synth	PF01564.17	gi|390938404|ref|YP_006402142.1|	-	0.089	12.2	0.0	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	Spermine/spermidine	synthase	domain
2-Hacid_dh_C	PF02826.19	gi|390938404|ref|YP_006402142.1|	-	0.15	11.4	0.0	0.33	10.3	0.0	1.6	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|390938404|ref|YP_006402142.1|	-	0.23	11.7	1.7	0.37	11.0	0.1	2.1	2	0	0	2	2	2	0	TrkA-N	domain
UDPG_MGDP_dh_N	PF03721.14	gi|390938404|ref|YP_006402142.1|	-	0.44	10.1	4.2	5	6.7	0.3	2.4	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Lycopene_cycl	PF05834.12	gi|390938404|ref|YP_006402142.1|	-	1.5	7.8	5.9	8.2	5.4	0.6	2.9	2	1	1	3	3	3	0	Lycopene	cyclase	protein
Trp_halogenase	PF04820.14	gi|390938404|ref|YP_006402142.1|	-	5.5	5.7	7.2	1.7	7.4	0.2	2.7	2	1	1	3	3	3	0	Tryptophan	halogenase
GDC-P	PF02347.16	gi|390938405|ref|YP_006402143.1|	-	6.9e-11	41.6	0.0	4.5e-10	38.9	0.0	1.9	2	0	0	2	2	2	1	Glycine	cleavage	system	P-protein
Aminotran_5	PF00266.19	gi|390938405|ref|YP_006402143.1|	-	8.3e-08	31.6	0.0	1.5e-07	30.7	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|390938405|ref|YP_006402143.1|	-	1.3e-05	24.6	0.0	2.4e-05	23.7	0.0	1.4	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|390938405|ref|YP_006402143.1|	-	0.0039	16.5	0.0	0.0065	15.8	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Pyridoxal_deC	PF00282.19	gi|390938405|ref|YP_006402143.1|	-	0.023	13.4	0.0	0.096	11.4	0.0	1.8	2	0	0	2	2	2	0	Pyridoxal-dependent	decarboxylase	conserved	domain
GDC-P	PF02347.16	gi|390938406|ref|YP_006402144.1|	-	1.4e-111	373.4	0.0	1.7e-111	373.1	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
Aminotran_5	PF00266.19	gi|390938406|ref|YP_006402144.1|	-	0.0013	17.8	0.0	0.0028	16.7	0.0	1.7	1	1	0	1	1	1	1	Aminotransferase	class-V
GCV_T	PF01571.21	gi|390938407|ref|YP_006402145.1|	-	1.3e-63	214.8	0.1	1.7e-63	214.4	0.1	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|390938407|ref|YP_006402145.1|	-	1.5e-21	76.1	0.0	3.2e-21	75.0	0.0	1.5	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
SHMT	PF00464.19	gi|390938408|ref|YP_006402146.1|	-	1.5e-68	231.2	0.1	2e-68	230.8	0.1	1.1	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Beta_elim_lyase	PF01212.21	gi|390938408|ref|YP_006402146.1|	-	2.5e-09	36.8	0.0	4.2e-09	36.1	0.0	1.4	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|390938408|ref|YP_006402146.1|	-	8.3e-09	35.1	0.0	4e-08	32.8	0.0	1.8	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|390938408|ref|YP_006402146.1|	-	2.4e-07	30.1	0.1	4e-07	29.3	0.1	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|390938408|ref|YP_006402146.1|	-	9.6e-05	21.1	0.3	0.0008	18.0	0.1	2.2	1	1	1	2	2	2	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|390938408|ref|YP_006402146.1|	-	0.00016	21.1	0.5	0.00039	19.8	0.2	1.6	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
XTBD	PF11952.8	gi|390938408|ref|YP_006402146.1|	-	0.16	11.8	0.7	1.2	8.9	0.1	2.4	2	0	0	2	2	2	0	XRN-Two	Binding	Domain,	XTBD
GCV_H	PF01597.19	gi|390938409|ref|YP_006402147.1|	-	4.7e-40	136.3	0.1	5.8e-40	136.0	0.1	1.1	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
RnfC_N	PF13375.6	gi|390938409|ref|YP_006402147.1|	-	0.0032	17.4	0.0	0.0044	16.9	0.0	1.3	1	0	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
Biotin_lipoyl	PF00364.22	gi|390938409|ref|YP_006402147.1|	-	0.044	13.6	0.1	0.044	13.6	0.1	1.6	2	0	0	2	2	2	0	Biotin-requiring	enzyme
DeoC	PF01791.9	gi|390938410|ref|YP_006402148.1|	-	8.7e-13	48.4	2.0	1.1e-12	48.1	2.0	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
DHO_dh	PF01180.21	gi|390938410|ref|YP_006402148.1|	-	0.00083	18.7	2.2	0.001	18.3	0.9	1.7	1	1	0	1	1	1	1	Dihydroorotate	dehydrogenase
FMN_dh	PF01070.18	gi|390938410|ref|YP_006402148.1|	-	0.013	14.5	2.8	0.013	14.5	2.8	1.8	1	1	2	3	3	3	0	FMN-dependent	dehydrogenase
Spermine_synth	PF01564.17	gi|390938411|ref|YP_006402149.1|	-	2.2e-47	160.9	0.0	3e-47	160.5	0.0	1.2	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
Spermine_synt_N	PF17284.2	gi|390938411|ref|YP_006402149.1|	-	4e-06	26.6	0.0	8.3e-06	25.6	0.0	1.5	1	0	0	1	1	1	1	Spermidine	synthase	tetramerisation	domain
Methyltransf_12	PF08242.12	gi|390938411|ref|YP_006402149.1|	-	0.0001	23.0	0.0	0.00027	21.6	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|390938411|ref|YP_006402149.1|	-	0.00042	21.0	0.0	0.00077	20.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|390938411|ref|YP_006402149.1|	-	0.015	15.2	0.0	0.028	14.3	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_2	PF00891.18	gi|390938411|ref|YP_006402149.1|	-	0.026	13.8	0.0	0.039	13.2	0.0	1.3	1	0	0	1	1	1	0	O-methyltransferase	domain
MTS	PF05175.14	gi|390938411|ref|YP_006402149.1|	-	0.094	12.3	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
DUF4350	PF14258.6	gi|390938412|ref|YP_006402150.1|	-	0.00067	20.0	0.1	0.0062	16.9	0.0	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
DUF4793	PF16041.5	gi|390938412|ref|YP_006402150.1|	-	0.076	13.2	0.0	0.17	12.0	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4793)
MliC	PF09864.9	gi|390938412|ref|YP_006402150.1|	-	0.21	11.6	0.3	7	6.7	0.0	2.3	2	0	0	2	2	2	0	Membrane-bound	lysozyme-inhibitor	of	c-type	lysozyme
DUF4129	PF13559.6	gi|390938413|ref|YP_006402151.1|	-	0.048	13.9	0.1	0.091	13.0	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4129)
DUF1156	PF06634.12	gi|390938414|ref|YP_006402152.1|	-	1.2e-13	50.9	0.1	1.2e-13	50.9	0.1	2.0	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF1156)
Cons_hypoth95	PF03602.15	gi|390938414|ref|YP_006402152.1|	-	0.00032	20.4	0.0	0.00054	19.6	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
HTH_23	PF13384.6	gi|390938415|ref|YP_006402153.1|	-	6.9e-05	22.5	0.1	0.00015	21.5	0.0	1.7	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_7	PF02796.15	gi|390938415|ref|YP_006402153.1|	-	0.00021	21.3	0.1	0.00058	19.9	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
TrmB	PF01978.19	gi|390938415|ref|YP_006402153.1|	-	0.0034	17.2	1.0	0.016	15.1	0.0	2.3	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
DUF3878	PF12994.7	gi|390938415|ref|YP_006402153.1|	-	0.03	13.8	0.0	0.036	13.5	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function,	E.	rectale	Gene	description	(DUF3878)
DUF433	PF04255.14	gi|390938415|ref|YP_006402153.1|	-	0.033	14.0	0.4	0.14	12.0	0.0	2.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF433)
DUF3071	PF11268.8	gi|390938415|ref|YP_006402153.1|	-	0.14	12.2	0.0	0.15	12.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
HTH_IclR	PF09339.10	gi|390938415|ref|YP_006402153.1|	-	0.15	11.9	0.0	0.29	11.0	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
FliS	PF02561.14	gi|390938415|ref|YP_006402153.1|	-	0.18	12.1	0.0	0.31	11.3	0.0	1.3	1	0	0	1	1	1	0	Flagellar	protein	FliS
CbiA	PF01656.23	gi|390938420|ref|YP_006402158.1|	-	7.3e-18	64.8	0.0	9.3e-18	64.5	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|390938420|ref|YP_006402158.1|	-	1.7e-13	50.6	0.6	4.7e-08	32.8	0.1	2.9	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
Fer4	PF00037.27	gi|390938420|ref|YP_006402158.1|	-	5.3e-13	48.2	12.8	2.1e-06	27.3	2.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|390938420|ref|YP_006402158.1|	-	1.9e-10	40.3	11.9	3.3e-05	23.8	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390938420|ref|YP_006402158.1|	-	1.9e-09	38.0	4.0	0.00087	19.8	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|390938420|ref|YP_006402158.1|	-	2.3e-09	37.3	1.0	0.0025	18.0	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|390938420|ref|YP_006402158.1|	-	2.7e-08	33.8	2.6	0.0041	17.2	0.0	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|390938420|ref|YP_006402158.1|	-	4.8e-08	32.6	12.7	0.00027	20.8	2.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|390938420|ref|YP_006402158.1|	-	1.4e-07	32.4	7.3	0.0015	19.4	0.4	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|390938420|ref|YP_006402158.1|	-	6e-07	29.5	5.5	8.8e-07	29.0	5.5	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA_31	PF13614.6	gi|390938420|ref|YP_006402158.1|	-	3.6e-06	27.0	0.1	0.015	15.2	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
Fer4_4	PF12800.7	gi|390938420|ref|YP_006402158.1|	-	4.7e-05	23.6	15.6	0.0086	16.5	3.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|390938420|ref|YP_006402158.1|	-	0.00019	21.8	3.9	0.26	11.8	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|390938420|ref|YP_006402158.1|	-	0.0008	19.9	8.9	0.12	12.9	1.3	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|390938420|ref|YP_006402158.1|	-	0.0065	17.3	18.5	0.18	12.8	5.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
AAA_25	PF13481.6	gi|390938420|ref|YP_006402158.1|	-	0.01	15.4	0.0	0.076	12.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
MipZ	PF09140.11	gi|390938420|ref|YP_006402158.1|	-	0.017	14.4	0.0	0.034	13.4	0.0	1.4	2	0	0	2	2	2	0	ATPase	MipZ
NAD_binding_10	PF13460.6	gi|390938420|ref|YP_006402158.1|	-	0.02	14.8	0.0	0.029	14.3	0.0	1.2	1	0	0	1	1	1	0	NAD(P)H-binding
Fer4_11	PF13247.6	gi|390938420|ref|YP_006402158.1|	-	0.032	14.3	3.6	0.056	13.6	3.6	1.3	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
ArsA_ATPase	PF02374.15	gi|390938420|ref|YP_006402158.1|	-	0.079	12.1	0.3	0.15	11.2	0.3	1.4	1	0	0	1	1	1	0	Anion-transporting	ATPase
PhoH	PF02562.16	gi|390938420|ref|YP_006402158.1|	-	0.081	12.4	0.1	0.14	11.6	0.1	1.3	1	0	0	1	1	1	0	PhoH-like	protein
Fer4_NifH	PF00142.18	gi|390938420|ref|YP_006402158.1|	-	0.11	12.0	0.1	0.44	9.9	0.0	1.8	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
Fer4_15	PF13459.6	gi|390938420|ref|YP_006402158.1|	-	0.14	12.9	4.0	12	6.7	1.2	2.4	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.6	gi|390938420|ref|YP_006402158.1|	-	0.31	11.2	7.8	0.56	10.4	1.9	2.2	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
CbiA	PF01656.23	gi|390938421|ref|YP_006402159.1|	-	6.1e-09	36.0	0.7	7.8e-09	35.7	0.7	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|390938421|ref|YP_006402159.1|	-	2.1e-08	33.9	0.7	2.9e-08	33.5	0.7	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|390938421|ref|YP_006402159.1|	-	1.2e-05	24.7	0.1	1.4e-05	24.4	0.1	1.1	1	0	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|390938421|ref|YP_006402159.1|	-	0.00046	19.6	0.0	0.00053	19.4	0.0	1.1	1	0	0	1	1	1	1	ATPase	MipZ
AAA_31	PF13614.6	gi|390938421|ref|YP_006402159.1|	-	0.0013	18.7	0.1	0.0017	18.3	0.1	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|390938421|ref|YP_006402159.1|	-	0.011	15.3	0.1	0.012	15.2	0.1	1.1	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|390938421|ref|YP_006402159.1|	-	0.022	14.5	1.2	0.036	13.8	0.2	1.7	1	1	1	2	2	2	0	IstB-like	ATP	binding	protein
PhoH	PF02562.16	gi|390938421|ref|YP_006402159.1|	-	0.046	13.2	0.1	0.052	13.0	0.1	1.2	1	0	0	1	1	1	0	PhoH-like	protein
Fer4_NifH	PF00142.18	gi|390938421|ref|YP_006402159.1|	-	0.074	12.5	0.2	0.11	11.9	0.2	1.2	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_16	PF13191.6	gi|390938421|ref|YP_006402159.1|	-	0.085	13.2	1.3	0.15	12.5	1.3	1.5	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_26	PF13500.6	gi|390938421|ref|YP_006402159.1|	-	0.14	12.0	0.1	0.2	11.5	0.1	1.1	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|390938421|ref|YP_006402159.1|	-	0.2	11.6	0.0	0.24	11.3	0.0	1.2	1	0	0	1	1	1	0	NACHT	domain
NB-ARC	PF00931.22	gi|390938421|ref|YP_006402159.1|	-	0.34	10.0	0.4	0.51	9.5	0.1	1.6	2	0	0	2	2	2	0	NB-ARC	domain
SDF	PF00375.18	gi|390938422|ref|YP_006402160.1|	-	2e-99	333.3	44.4	2.3e-99	333.1	44.4	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
UPF0113	PF03657.13	gi|390938423|ref|YP_006402161.1|	-	1.6e-19	70.0	0.2	2.6e-19	69.3	0.2	1.4	1	0	0	1	1	1	1	UPF0113	PUA	domain
Methyltr_RsmB-F	PF01189.17	gi|390938424|ref|YP_006402162.1|	-	3.4e-39	134.6	0.0	4.1e-39	134.3	0.0	1.1	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|390938424|ref|YP_006402162.1|	-	3.5e-12	46.7	0.0	5.3e-12	46.1	0.0	1.3	1	0	0	1	1	1	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
DUF72	PF01904.18	gi|390938425|ref|YP_006402163.1|	-	2.8e-41	142.0	0.1	3.3e-41	141.8	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
PHO4	PF01384.20	gi|390938426|ref|YP_006402164.1|	-	4.7e-62	210.0	28.5	5.9e-62	209.7	28.5	1.1	1	0	0	1	1	1	1	Phosphate	transporter	family
Peptidase_M42	PF05343.14	gi|390938427|ref|YP_006402165.1|	-	6e-106	353.7	0.3	7e-106	353.5	0.3	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.28	gi|390938427|ref|YP_006402165.1|	-	2.6e-10	40.4	0.1	4.3e-10	39.6	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.17	gi|390938427|ref|YP_006402165.1|	-	1.3e-06	28.2	0.0	0.00013	21.7	0.0	2.2	2	0	0	2	2	2	2	Peptidase	family	M28
Peptidase_M18	PF02127.15	gi|390938427|ref|YP_006402165.1|	-	0.013	14.4	0.0	0.04	12.7	0.0	1.8	1	1	1	2	2	2	0	Aminopeptidase	I	zinc	metalloprotease	(M18)
Tudor_2	PF18104.1	gi|390938427|ref|YP_006402165.1|	-	0.025	14.3	0.1	0.054	13.2	0.1	1.6	1	0	0	1	1	1	0	Jumonji	domain-containing	protein	2A	Tudor	domain
DUF4905	PF16248.5	gi|390938428|ref|YP_006402166.1|	-	0.12	12.3	0.0	1.7	8.6	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4905)
PipA	PF07108.11	gi|390938428|ref|YP_006402166.1|	-	0.18	11.3	0.0	0.22	11.0	0.0	1.1	1	0	0	1	1	1	0	PipA	protein
Radical_SAM	PF04055.21	gi|390938429|ref|YP_006402167.1|	-	6.4e-13	49.4	0.0	1.7e-12	48.0	0.0	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
SPASM	PF13186.6	gi|390938429|ref|YP_006402167.1|	-	1.5e-12	47.8	0.4	4.3e-12	46.4	0.4	1.8	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Fer4_14	PF13394.6	gi|390938429|ref|YP_006402167.1|	-	1e-08	35.3	0.0	3.1e-08	33.8	0.0	1.8	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|390938429|ref|YP_006402167.1|	-	5.1e-06	26.8	0.0	1.6e-05	25.2	0.0	1.9	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
ThiS	PF02597.20	gi|390938430|ref|YP_006402168.1|	-	1.4e-11	44.8	0.1	2e-11	44.4	0.1	1.2	1	0	0	1	1	1	1	ThiS	family
Lambda_tail_I	PF06805.12	gi|390938430|ref|YP_006402168.1|	-	0.091	13.1	0.0	0.28	11.6	0.0	1.8	1	1	0	1	1	1	0	Bacteriophage	lambda	tail	assembly	protein	I
AFOR_C	PF01314.18	gi|390938431|ref|YP_006402169.1|	-	8.4e-146	485.9	0.0	1e-145	485.5	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|390938431|ref|YP_006402169.1|	-	2.2e-76	256.2	1.0	1.6e-75	253.3	0.2	2.4	3	0	0	3	3	3	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
AAA_3	PF07726.11	gi|390938432|ref|YP_006402170.1|	-	8.7e-63	210.0	0.2	2.2e-62	208.7	0.1	1.7	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|390938432|ref|YP_006402170.1|	-	2.4e-20	72.1	0.0	4.1e-20	71.4	0.0	1.4	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|390938432|ref|YP_006402170.1|	-	1.1e-16	61.1	0.0	3.2e-16	59.6	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|390938432|ref|YP_006402170.1|	-	2.1e-06	28.2	0.0	5.8e-06	26.8	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MCM	PF00493.23	gi|390938432|ref|YP_006402170.1|	-	4.6e-05	22.6	0.0	0.0001	21.5	0.0	1.5	1	0	0	1	1	1	1	MCM	P-loop	domain
Sigma54_activat	PF00158.26	gi|390938432|ref|YP_006402170.1|	-	8.1e-05	22.4	0.0	0.00021	21.1	0.0	1.6	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|390938432|ref|YP_006402170.1|	-	8.2e-05	22.1	1.0	0.31	10.4	0.0	2.7	3	0	0	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.12	gi|390938432|ref|YP_006402170.1|	-	0.0024	17.6	0.5	0.043	13.6	0.1	2.5	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Fimbrial_PilY2	PF14481.6	gi|390938432|ref|YP_006402170.1|	-	0.024	14.3	0.0	2.5	7.8	0.0	2.7	2	0	0	2	2	2	0	Type	4	fimbrial	biogenesis	protein	PilY2
AAA_2	PF07724.14	gi|390938432|ref|YP_006402170.1|	-	0.027	14.6	0.2	1.1	9.4	0.0	2.6	2	1	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
Njmu-R1	PF15053.6	gi|390938432|ref|YP_006402170.1|	-	0.027	13.6	0.1	0.14	11.2	0.0	1.8	2	0	0	2	2	2	0	Mjmu-R1-like	protein	family
MCM_lid	PF17855.1	gi|390938432|ref|YP_006402170.1|	-	0.065	13.7	0.0	0.14	12.6	0.0	1.5	1	0	0	1	1	1	0	MCM	AAA-lid	domain
Filo_VP35	PF02097.15	gi|390938432|ref|YP_006402170.1|	-	0.094	11.8	0.0	0.13	11.3	0.0	1.3	1	0	0	1	1	1	0	Filoviridae	VP35
DUF4129	PF13559.6	gi|390938433|ref|YP_006402171.1|	-	3.2e-09	36.9	1.1	4.8e-09	36.3	1.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
DUF2540	PF10802.8	gi|390938433|ref|YP_006402171.1|	-	0.022	14.9	0.4	0.046	13.8	0.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2540)
CtsR_C	PF17727.1	gi|390938433|ref|YP_006402171.1|	-	0.31	11.2	3.5	0.8	9.9	0.2	2.5	2	0	0	2	2	2	0	CtsR	C-terminal	dimerization	domain
DUF3611	PF12263.8	gi|390938435|ref|YP_006402173.1|	-	0.0072	16.2	0.6	0.008	16.1	0.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3611)
DUF2892	PF11127.8	gi|390938435|ref|YP_006402173.1|	-	1.6	8.8	6.3	2	8.5	6.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
DUF58	PF01882.18	gi|390938437|ref|YP_006402175.1|	-	2.9e-15	56.3	0.0	4.4e-15	55.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
Linocin_M18	PF04454.12	gi|390938438|ref|YP_006402176.1|	-	1.7e-32	112.8	0.0	2.6e-32	112.1	0.0	1.3	1	0	0	1	1	1	1	Encapsulating	protein	for	peroxidase
Rubrerythrin	PF02915.17	gi|390938438|ref|YP_006402176.1|	-	4.5e-09	36.8	0.2	7.8e-09	36.1	0.2	1.4	1	0	0	1	1	1	1	Rubrerythrin
DUF2383	PF09537.10	gi|390938438|ref|YP_006402176.1|	-	0.007	16.7	0.2	0.014	15.7	0.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2383)
Phage_capsid	PF05065.13	gi|390938438|ref|YP_006402176.1|	-	0.02	14.2	0.1	6.1	6.1	0.0	2.5	2	0	0	2	2	2	0	Phage	capsid	family
Ferritin	PF00210.24	gi|390938438|ref|YP_006402176.1|	-	0.027	14.4	0.1	0.056	13.4	0.1	1.5	1	0	0	1	1	1	0	Ferritin-like	domain
DUF615	PF04751.14	gi|390938438|ref|YP_006402176.1|	-	0.13	12.3	0.1	0.24	11.4	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF615)
Rubrerythrin	PF02915.17	gi|390938439|ref|YP_006402177.1|	-	2.2e-06	28.1	1.9	4.2e-06	27.2	1.9	1.4	1	1	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.24	gi|390938439|ref|YP_006402177.1|	-	0.0027	17.7	1.4	0.014	15.3	1.4	1.9	1	1	0	1	1	1	1	Ferritin-like	domain
FA_desaturase_2	PF03405.14	gi|390938439|ref|YP_006402177.1|	-	0.0068	15.3	0.1	0.62	8.8	0.0	2.1	1	1	1	2	2	2	2	Fatty	acid	desaturase
FCH	PF00611.23	gi|390938439|ref|YP_006402177.1|	-	0.008	16.4	1.5	0.014	15.7	0.4	2.0	2	1	0	2	2	2	1	Fes/CIP4,	and	EFC/F-BAR	homology	domain
COQ7	PF03232.13	gi|390938439|ref|YP_006402177.1|	-	0.014	15.2	2.5	0.027	14.2	1.2	1.9	1	1	0	2	2	2	0	Ubiquinone	biosynthesis	protein	COQ7
Coat_F	PF07875.12	gi|390938439|ref|YP_006402177.1|	-	0.079	13.2	0.0	9.6	6.5	0.0	2.9	1	1	2	3	3	3	0	Coat	F	domain
PTS_IIA	PF02255.16	gi|390938439|ref|YP_006402177.1|	-	0.082	13.0	1.1	0.14	12.2	1.1	1.4	1	0	0	1	1	1	0	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
HSR	PF03172.13	gi|390938439|ref|YP_006402177.1|	-	0.099	12.8	1.1	0.63	10.2	0.2	2.6	1	1	2	3	3	3	0	HSR	domain
Lactamase_B	PF00753.27	gi|390938440|ref|YP_006402178.1|	-	1.3e-08	35.1	0.2	2.3e-08	34.3	0.2	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|390938440|ref|YP_006402178.1|	-	0.013	15.0	0.1	0.021	14.3	0.1	1.2	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
RsgI_N	PF12791.7	gi|390938440|ref|YP_006402178.1|	-	0.057	13.3	0.0	0.14	12.0	0.0	1.7	1	0	0	1	1	1	0	Anti-sigma	factor	N-terminus
Peripla_BP_6	PF13458.6	gi|390938440|ref|YP_006402178.1|	-	0.18	11.4	0.0	0.28	10.8	0.0	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein
AhpC-TSA	PF00578.21	gi|390938441|ref|YP_006402179.1|	-	1.4e-33	115.4	0.0	2e-33	115.0	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|390938441|ref|YP_006402179.1|	-	1.5e-17	63.7	0.0	2e-17	63.3	0.0	1.1	1	0	0	1	1	1	1	Redoxin
1-cysPrx_C	PF10417.9	gi|390938441|ref|YP_006402179.1|	-	5.8e-11	42.1	0.0	1.3e-10	40.9	0.0	1.6	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
Sel1	PF08238.12	gi|390938441|ref|YP_006402179.1|	-	0.003	18.2	0.1	0.0077	16.9	0.1	1.8	1	0	0	1	1	1	1	Sel1	repeat
AhpC-TSA_2	PF13911.6	gi|390938441|ref|YP_006402179.1|	-	0.056	13.6	0.0	0.067	13.3	0.0	1.3	1	0	0	1	1	1	0	AhpC/TSA	antioxidant	enzyme
zf-ribbon_3	PF13248.6	gi|390938442|ref|YP_006402180.1|	-	0.0063	15.9	1.5	1.5	8.3	0.3	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|390938442|ref|YP_006402180.1|	-	0.028	14.2	1.6	5.7	6.8	0.2	3.0	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-Di19	PF05605.12	gi|390938442|ref|YP_006402180.1|	-	0.029	14.7	0.3	4.8	7.6	0.0	2.1	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
Cys_rich_CPXG	PF14255.6	gi|390938442|ref|YP_006402180.1|	-	0.067	13.1	1.5	8	6.4	0.0	2.2	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
zf-nanos	PF05741.13	gi|390938442|ref|YP_006402180.1|	-	0.08	13.2	0.3	1.7	9.0	0.0	2.1	2	0	0	2	2	2	0	Nanos	RNA	binding	domain
CpXC	PF14353.6	gi|390938442|ref|YP_006402180.1|	-	0.093	12.8	0.1	4.1	7.5	0.0	2.1	1	1	1	2	2	2	0	CpXC	protein
SoxD	PF04267.12	gi|390938442|ref|YP_006402180.1|	-	0.15	12.2	0.5	0.93	9.6	0.0	2.0	2	0	0	2	2	2	0	Sarcosine	oxidase,	delta	subunit	family
HD	PF01966.22	gi|390938443|ref|YP_006402181.1|	-	7.7e-07	29.4	0.7	3e-06	27.5	0.7	2.1	1	1	0	1	1	1	1	HD	domain
Glycos_transf_2	PF00535.26	gi|390938444|ref|YP_006402182.1|	-	1.3e-29	103.1	0.0	1.9e-29	102.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|390938444|ref|YP_006402182.1|	-	2.5e-11	43.9	0.0	3.7e-11	43.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|390938444|ref|YP_006402182.1|	-	0.068	12.6	0.0	0.094	12.2	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
UPF0542	PF15086.6	gi|390938444|ref|YP_006402182.1|	-	0.16	12.0	1.2	0.28	11.2	1.2	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0542
tRNA-synt_1	PF00133.22	gi|390938445|ref|YP_006402183.1|	-	1.5e-174	581.6	0.1	1.9e-174	581.3	0.1	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|390938445|ref|YP_006402183.1|	-	3.2e-39	134.3	0.4	7.1e-39	133.2	0.4	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|390938445|ref|YP_006402183.1|	-	1.5e-20	73.3	0.1	5.5e-07	28.7	0.0	3.9	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|390938445|ref|YP_006402183.1|	-	5.4e-07	29.3	0.1	3e-06	26.9	0.0	2.2	2	0	0	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
partial_CstF	PF15861.5	gi|390938445|ref|YP_006402183.1|	-	0.077	12.8	4.8	3.9	7.3	0.5	3.1	3	0	0	3	3	3	0	Partial	cleavage	stimulation	factor	domain
DUF1610	PF07754.11	gi|390938445|ref|YP_006402183.1|	-	2	8.5	5.5	32	4.6	0.1	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
dCMP_cyt_deam_1	PF00383.23	gi|390938446|ref|YP_006402184.1|	-	2.3e-16	59.5	0.2	2.9e-16	59.2	0.2	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.12	gi|390938446|ref|YP_006402184.1|	-	3.1e-10	40.4	0.4	4.8e-10	39.8	0.4	1.3	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
LmjF365940-deam	PF14421.6	gi|390938446|ref|YP_006402184.1|	-	4.9e-06	26.3	1.9	0.0013	18.4	0.2	2.1	1	1	1	2	2	2	2	A	distinct	subfamily	of	CDD/CDA-like	deaminases
Methyltransf_23	PF13489.6	gi|390938447|ref|YP_006402185.1|	-	1.8e-10	40.9	0.0	2.6e-10	40.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|390938447|ref|YP_006402185.1|	-	4.7e-10	40.0	0.0	6.7e-10	39.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|390938447|ref|YP_006402185.1|	-	1.7e-08	35.1	0.0	3.5e-08	34.0	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|390938447|ref|YP_006402185.1|	-	2.1e-06	28.4	0.0	1.7e-05	25.4	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|390938447|ref|YP_006402185.1|	-	0.0011	18.8	0.0	0.13	12.0	0.0	2.1	2	0	0	2	2	2	2	Methyltransferase	domain
NNMT_PNMT_TEMT	PF01234.17	gi|390938447|ref|YP_006402185.1|	-	0.081	12.1	0.0	3.8	6.6	0.0	2.2	2	0	0	2	2	2	0	NNMT/PNMT/TEMT	family
Methyltransf_9	PF08003.11	gi|390938447|ref|YP_006402185.1|	-	0.11	11.4	0.2	0.6	9.0	0.2	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Pox_MCEL	PF03291.16	gi|390938447|ref|YP_006402185.1|	-	0.14	11.2	0.0	0.21	10.7	0.0	1.3	1	0	0	1	1	1	0	mRNA	capping	enzyme
AAA_23	PF13476.6	gi|390938448|ref|YP_006402186.1|	-	2.5e-26	93.4	11.7	2.5e-26	93.4	11.7	5.4	1	1	2	3	3	2	1	AAA	domain
SMC_N	PF02463.19	gi|390938448|ref|YP_006402186.1|	-	1.8e-09	37.4	15.9	7.8e-06	25.5	0.0	2.4	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|390938448|ref|YP_006402186.1|	-	3.3e-06	26.8	0.1	3.3e-06	26.8	0.1	4.7	4	1	1	6	6	6	1	AAA	domain
AAA_21	PF13304.6	gi|390938448|ref|YP_006402186.1|	-	4.7e-05	23.3	22.3	6.2e-05	23.0	4.6	3.9	2	2	0	3	3	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|390938448|ref|YP_006402186.1|	-	0.00028	20.6	0.0	0.00056	19.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad50_zn_hook	PF04423.14	gi|390938448|ref|YP_006402186.1|	-	0.0025	17.6	0.3	0.0025	17.6	0.3	7.1	7	3	2	9	9	5	1	Rad50	zinc	hook	motif
DUF1664	PF07889.12	gi|390938448|ref|YP_006402186.1|	-	0.0026	17.8	41.7	0.13	12.4	4.2	4.9	3	1	1	4	4	4	2	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.12	gi|390938448|ref|YP_006402186.1|	-	0.0026	17.8	8.5	0.0026	17.8	8.5	4.9	2	2	2	4	4	4	1	Laminin	Domain	II
MscS_porin	PF12795.7	gi|390938448|ref|YP_006402186.1|	-	0.0033	17.0	17.3	0.0033	17.0	17.3	4.0	2	2	1	3	3	3	1	Mechanosensitive	ion	channel	porin	domain
zf-C4H2	PF10146.9	gi|390938448|ref|YP_006402186.1|	-	0.017	15.4	10.9	0.017	15.4	10.9	5.7	3	2	2	5	5	4	0	Zinc	finger-containing	protein
NACHT	PF05729.12	gi|390938448|ref|YP_006402186.1|	-	0.02	14.8	0.2	0.097	12.6	0.0	2.3	2	0	0	2	2	2	0	NACHT	domain
AAA_16	PF13191.6	gi|390938448|ref|YP_006402186.1|	-	0.025	15.0	0.0	0.025	15.0	0.0	3.9	2	1	0	2	2	1	0	AAA	ATPase	domain
EzrA	PF06160.12	gi|390938448|ref|YP_006402186.1|	-	0.027	12.6	73.6	0.023	12.9	13.6	4.4	2	2	2	4	4	4	0	Septation	ring	formation	regulator,	EzrA
AAA_25	PF13481.6	gi|390938448|ref|YP_006402186.1|	-	0.057	13.0	4.1	0.078	12.5	0.0	3.2	4	1	1	5	5	5	0	AAA	domain
DUF3450	PF11932.8	gi|390938448|ref|YP_006402186.1|	-	0.07	12.4	54.0	1.1	8.5	4.8	4.6	2	2	1	4	4	4	0	Protein	of	unknown	function	(DUF3450)
ABC_tran	PF00005.27	gi|390938448|ref|YP_006402186.1|	-	0.089	13.3	0.0	0.089	13.3	0.0	5.4	3	2	0	3	3	2	0	ABC	transporter
AAA_13	PF13166.6	gi|390938448|ref|YP_006402186.1|	-	0.093	11.4	54.4	0.033	12.8	15.4	4.1	2	1	1	3	3	3	0	AAA	domain
AAA_22	PF13401.6	gi|390938448|ref|YP_006402186.1|	-	0.15	12.4	0.0	0.15	12.4	0.0	5.4	3	1	3	6	6	6	0	AAA	domain
Prominin	PF05478.11	gi|390938448|ref|YP_006402186.1|	-	0.2	9.6	37.4	0.044	11.7	11.4	2.4	1	1	1	2	2	2	0	Prominin
AAA_19	PF13245.6	gi|390938448|ref|YP_006402186.1|	-	0.2	12.0	1.6	1.6	9.1	0.0	3.1	3	1	0	3	3	2	0	AAA	domain
Spc7	PF08317.11	gi|390938448|ref|YP_006402186.1|	-	0.21	10.4	79.2	0.082	11.8	5.3	4.3	2	2	2	4	4	4	0	Spc7	kinetochore	protein
APG6_N	PF17675.1	gi|390938448|ref|YP_006402186.1|	-	0.21	12.1	88.1	2.7	8.5	10.0	4.9	2	2	2	4	4	4	0	Apg6	coiled-coil	region
APH	PF01636.23	gi|390938448|ref|YP_006402186.1|	-	0.25	11.3	2.0	0.59	10.0	2.0	1.6	1	0	0	1	1	1	0	Phosphotransferase	enzyme	family
DUF3800	PF12686.7	gi|390938448|ref|YP_006402186.1|	-	0.27	11.9	12.7	2.4e+03	-0.9	12.4	4.3	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3800)
AAA_5	PF07728.14	gi|390938448|ref|YP_006402186.1|	-	0.48	10.4	0.0	0.48	10.4	0.0	3.1	3	1	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
Baculo_PEP_C	PF04513.12	gi|390938448|ref|YP_006402186.1|	-	0.51	10.4	22.6	0.47	10.5	0.8	5.0	2	2	4	6	6	6	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ResIII	PF04851.15	gi|390938448|ref|YP_006402186.1|	-	0.53	10.3	0.0	0.53	10.3	0.0	3.9	4	1	1	5	5	5	0	Type	III	restriction	enzyme,	res	subunit
HSBP1	PF06825.12	gi|390938448|ref|YP_006402186.1|	-	0.92	9.4	20.4	14	5.7	1.5	6.3	5	1	0	5	5	5	0	Heat	shock	factor	binding	protein	1
PspA_IM30	PF04012.12	gi|390938448|ref|YP_006402186.1|	-	1.1	8.8	50.3	0.047	13.3	7.1	5.0	1	1	3	5	5	5	0	PspA/IM30	family
GIT1_C	PF12205.8	gi|390938448|ref|YP_006402186.1|	-	1.4	9.0	18.4	2.6	8.2	5.8	4.4	3	1	1	4	4	4	0	G	protein-coupled	receptor	kinase-interacting	protein	1	C	term
NPV_P10	PF05531.12	gi|390938448|ref|YP_006402186.1|	-	6.3	7.3	28.1	15	6.1	0.6	6.4	2	2	4	6	6	6	0	Nucleopolyhedrovirus	P10	protein
DUF724	PF05266.14	gi|390938448|ref|YP_006402186.1|	-	9	6.1	68.6	1	9.1	3.5	5.6	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF724)
Sec34	PF04136.15	gi|390938448|ref|YP_006402186.1|	-	9	6.2	38.6	0.11	12.4	2.2	5.6	2	2	3	5	5	5	0	Sec34-like	family
Exonuc_VII_L	PF02601.15	gi|390938448|ref|YP_006402186.1|	-	9.7	5.7	44.2	1.8e+04	-15.3	44.2	3.4	1	1	0	1	1	0	0	Exonuclease	VII,	large	subunit
DUF87	PF01935.17	gi|390938449|ref|YP_006402187.1|	-	8.5e-16	58.7	3.6	8.3e-13	48.9	0.2	2.4	2	0	0	2	2	2	2	Helicase	HerA,	central	domain
FtsK_SpoIIIE	PF01580.18	gi|390938449|ref|YP_006402187.1|	-	8.4e-07	28.6	0.0	0.00063	19.2	0.0	2.3	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.9	gi|390938449|ref|YP_006402187.1|	-	7e-06	25.2	0.0	5e-05	22.4	0.0	2.0	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.7	gi|390938449|ref|YP_006402187.1|	-	0.00089	18.3	0.1	0.17	10.8	0.0	2.6	2	0	0	2	2	2	2	AAA-like	domain
SepF	PF04472.12	gi|390938449|ref|YP_006402187.1|	-	0.0027	18.0	0.2	0.0087	16.3	0.2	1.8	1	0	0	1	1	1	1	Cell	division	protein	SepF
PduV-EutP	PF10662.9	gi|390938449|ref|YP_006402187.1|	-	0.0062	16.3	0.1	0.075	12.8	0.0	2.3	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
DUF2073	PF09846.9	gi|390938449|ref|YP_006402187.1|	-	0.022	14.6	0.2	0.076	12.9	0.2	1.9	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
AAA_22	PF13401.6	gi|390938449|ref|YP_006402187.1|	-	0.038	14.3	0.0	0.097	12.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Metallophos	PF00149.28	gi|390938451|ref|YP_006402189.1|	-	2.5e-14	54.3	0.4	4.2e-14	53.5	0.4	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|390938451|ref|YP_006402189.1|	-	1.7e-05	25.1	0.0	0.00014	22.1	0.0	2.1	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Pilus_CpaD	PF09476.10	gi|390938451|ref|YP_006402189.1|	-	0.19	11.4	0.0	0.3	10.8	0.0	1.2	1	0	0	1	1	1	0	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
PALP	PF00291.25	gi|390938452|ref|YP_006402190.1|	-	1.6e-71	241.2	0.0	1.9e-71	240.9	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
PfkB	PF00294.24	gi|390938453|ref|YP_006402191.1|	-	5.8e-52	176.9	0.1	6.9e-52	176.6	0.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|390938453|ref|YP_006402191.1|	-	0.00012	21.5	0.0	0.00018	21.0	0.0	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
DeoC	PF01791.9	gi|390938454|ref|YP_006402192.1|	-	1.7e-33	116.2	0.0	2e-33	116.0	0.0	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
Sm_multidrug_ex	PF06695.11	gi|390938455|ref|YP_006402193.1|	-	4.4e-29	101.6	2.0	5.8e-29	101.2	2.0	1.1	1	0	0	1	1	1	1	Putative	small	multi-drug	export	protein
EI24	PF07264.11	gi|390938455|ref|YP_006402193.1|	-	0.0029	17.9	5.2	0.0029	17.9	5.2	1.5	1	1	0	1	1	1	1	Etoposide-induced	protein	2.4	(EI24)
Bmp	PF02608.14	gi|390938456|ref|YP_006402194.1|	-	3.7e-34	118.1	0.2	5.6e-34	117.5	0.2	1.2	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
Peripla_BP_6	PF13458.6	gi|390938456|ref|YP_006402194.1|	-	0.0005	19.8	2.0	0.00055	19.7	0.4	1.7	1	1	1	2	2	2	1	Periplasmic	binding	protein
RAI16-like	PF10257.9	gi|390938456|ref|YP_006402194.1|	-	0.027	13.3	0.0	0.039	12.8	0.0	1.1	1	0	0	1	1	1	0	Retinoic	acid	induced	16-like	protein
Hpr_kinase_N	PF02603.16	gi|390938456|ref|YP_006402194.1|	-	0.066	13.2	0.0	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	HPr	Serine	kinase	N	terminus
ABC_tran	PF00005.27	gi|390938457|ref|YP_006402195.1|	-	4.4e-39	134.1	0.1	8e-29	100.9	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_29	PF13555.6	gi|390938457|ref|YP_006402195.1|	-	0.00057	19.6	0.0	0.01	15.5	0.0	2.4	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|390938457|ref|YP_006402195.1|	-	0.0047	17.3	0.0	0.031	14.7	0.0	2.2	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|390938457|ref|YP_006402195.1|	-	0.0062	16.3	1.0	9.1	5.9	0.0	3.7	3	1	1	4	4	4	1	AAA	domain
AAA_21	PF13304.6	gi|390938457|ref|YP_006402195.1|	-	0.013	15.3	0.6	0.097	12.5	0.6	2.5	1	1	0	1	1	1	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|390938457|ref|YP_006402195.1|	-	0.048	14.2	0.0	0.1	13.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|390938457|ref|YP_006402195.1|	-	0.062	13.2	0.0	0.17	11.7	0.0	1.7	1	0	0	1	1	1	0	RsgA	GTPase
DUF815	PF05673.13	gi|390938457|ref|YP_006402195.1|	-	0.067	12.3	0.0	2.8	7.0	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
SMC_N	PF02463.19	gi|390938457|ref|YP_006402195.1|	-	0.088	12.2	0.3	5	6.5	0.1	3.0	3	0	0	3	3	3	0	RecF/RecN/SMC	N	terminal	domain
MukB	PF04310.12	gi|390938457|ref|YP_006402195.1|	-	0.091	12.6	0.0	0.35	10.6	0.0	1.9	2	0	0	2	2	2	0	MukB	N-terminal
BPD_transp_2	PF02653.16	gi|390938458|ref|YP_006402196.1|	-	1.3e-21	77.0	29.4	1.3e-21	77.0	29.4	2.3	1	1	1	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|390938459|ref|YP_006402197.1|	-	3.4e-17	62.5	35.1	4.3e-17	62.1	35.1	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
tRNA-synt_1f	PF01921.18	gi|390938460|ref|YP_006402198.1|	-	2.5e-91	306.3	0.2	3e-91	306.0	0.2	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
TF_Zn_Ribbon	PF08271.12	gi|390938460|ref|YP_006402198.1|	-	0.051	13.1	3.1	0.16	11.5	3.1	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
SAM_Exu	PF18609.1	gi|390938460|ref|YP_006402198.1|	-	0.21	11.7	1.7	0.37	10.9	0.0	2.2	3	0	0	3	3	3	0	Exuperantia	SAM-like	domain
MFS_1	PF07690.16	gi|390938461|ref|YP_006402199.1|	-	3.7e-25	88.6	37.2	9.7e-13	47.8	16.2	2.4	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
tRNA-synt_1	PF00133.22	gi|390938462|ref|YP_006402200.1|	-	3.2e-50	171.0	0.1	7.1e-49	166.6	0.1	2.4	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|390938462|ref|YP_006402200.1|	-	3.9e-19	68.7	3.5	2.8e-10	39.5	0.1	3.9	3	1	0	3	3	3	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|390938462|ref|YP_006402200.1|	-	1.2e-15	57.8	0.0	2.5e-15	56.8	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|390938462|ref|YP_006402200.1|	-	5.6e-08	32.5	0.1	0.0042	16.5	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|390938462|ref|YP_006402200.1|	-	0.002	17.1	0.0	0.0068	15.4	0.0	1.9	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
Amidohydro_1	PF01979.20	gi|390938463|ref|YP_006402201.1|	-	4.6e-27	95.2	0.0	5.4e-27	95.0	0.0	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|390938463|ref|YP_006402201.1|	-	7.2e-14	52.1	0.1	5.8e-06	26.0	0.0	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
MarC	PF01914.17	gi|390938464|ref|YP_006402202.1|	-	2.5e-43	147.8	20.0	3.1e-43	147.6	20.0	1.1	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
Cation_efflux	PF01545.21	gi|390938465|ref|YP_006402203.1|	-	3e-15	56.5	16.3	4e-15	56.1	16.3	1.1	1	0	0	1	1	1	1	Cation	efflux	family
Fer4_13	PF13370.6	gi|390938466|ref|YP_006402204.1|	-	5.9e-21	74.8	3.4	6.8e-21	74.6	3.4	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|390938466|ref|YP_006402204.1|	-	2.6e-15	56.9	2.6	3e-15	56.7	2.6	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4	PF00037.27	gi|390938466|ref|YP_006402204.1|	-	0.006	16.4	5.5	0.051	13.4	1.3	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390938466|ref|YP_006402204.1|	-	0.0076	16.8	2.4	0.03	14.9	2.5	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|390938466|ref|YP_006402204.1|	-	0.017	15.2	6.5	0.022	14.8	0.9	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|390938466|ref|YP_006402204.1|	-	0.052	14.1	3.7	0.053	14.1	0.2	2.3	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|390938466|ref|YP_006402204.1|	-	0.17	12.0	3.7	1.9	8.7	4.2	2.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Peptidase_M20	PF01546.28	gi|390938467|ref|YP_006402205.1|	-	2.1e-38	132.1	0.0	2.9e-38	131.7	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|390938467|ref|YP_006402205.1|	-	6.5e-20	71.1	0.0	1e-19	70.4	0.0	1.3	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|390938467|ref|YP_006402205.1|	-	0.0059	16.3	0.0	0.0096	15.6	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M28
Sdh_cyt	PF01127.22	gi|390938469|ref|YP_006402207.1|	-	0.11	12.6	0.0	0.4	10.7	0.0	1.9	2	0	0	2	2	2	0	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Inositol_P	PF00459.25	gi|390938470|ref|YP_006402208.1|	-	8.6e-09	35.3	0.0	1.3e-08	34.7	0.0	1.3	1	1	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.20	gi|390938470|ref|YP_006402208.1|	-	2.2e-07	30.5	0.0	3.4e-07	29.9	0.0	1.2	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase,	N-terminal	domain
Peptidase_M24	PF00557.24	gi|390938471|ref|YP_006402209.1|	-	6.5e-58	195.9	0.0	8.2e-58	195.5	0.0	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|390938471|ref|YP_006402209.1|	-	3.3e-10	40.7	0.0	5.4e-10	40.0	0.0	1.4	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
DUF1194	PF06707.11	gi|390938471|ref|YP_006402209.1|	-	0.0095	15.2	0.0	0.015	14.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1194)
C1_2	PF03107.16	gi|390938472|ref|YP_006402210.1|	-	0.07	13.5	0.1	0.12	12.7	0.1	1.4	1	0	0	1	1	1	0	C1	domain
Acetone_carb_G	PF08882.11	gi|390938472|ref|YP_006402210.1|	-	0.099	12.8	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	Acetone	carboxylase	gamma	subunit
Aminotran_5	PF00266.19	gi|390938474|ref|YP_006402212.1|	-	1.9e-37	129.1	0.0	2.2e-37	128.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|390938474|ref|YP_006402212.1|	-	2.7e-06	26.8	0.0	3.8e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
GDC-P	PF02347.16	gi|390938474|ref|YP_006402212.1|	-	0.00074	18.5	0.0	0.0011	17.8	0.0	1.2	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
ACT	PF01842.25	gi|390938475|ref|YP_006402213.1|	-	0.12	12.2	0.0	0.24	11.2	0.0	1.5	1	0	0	1	1	1	0	ACT	domain
DUF4916	PF16262.5	gi|390938476|ref|YP_006402214.1|	-	0.0089	15.5	0.2	0.014	15.0	0.2	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4916)
HD	PF01966.22	gi|390938479|ref|YP_006402217.1|	-	2.2e-10	40.8	0.3	5.3e-10	39.6	0.3	1.7	1	0	0	1	1	1	1	HD	domain
HTH_IclR	PF09339.10	gi|390938480|ref|YP_006402218.1|	-	5.2e-08	32.6	0.0	6.9e-08	32.2	0.0	1.1	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|390938480|ref|YP_006402218.1|	-	9.2e-05	22.2	0.0	0.00011	22.0	0.0	1.1	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|390938480|ref|YP_006402218.1|	-	0.00014	21.3	0.0	0.00019	20.9	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|390938480|ref|YP_006402218.1|	-	0.00029	20.7	0.0	0.00038	20.3	0.0	1.1	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|390938480|ref|YP_006402218.1|	-	0.0003	20.8	0.0	0.00036	20.5	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
FaeA	PF04703.12	gi|390938480|ref|YP_006402218.1|	-	0.00043	20.6	0.0	0.00051	20.4	0.0	1.1	1	0	0	1	1	1	1	FaeA-like	protein
HTH_11	PF08279.12	gi|390938480|ref|YP_006402218.1|	-	0.00081	19.3	0.0	0.00098	19.0	0.0	1.1	1	0	0	1	1	1	1	HTH	domain
Sigma70_r4_2	PF08281.12	gi|390938480|ref|YP_006402218.1|	-	0.0015	18.2	0.0	0.0027	17.3	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_Crp_2	PF13545.6	gi|390938480|ref|YP_006402218.1|	-	0.0017	18.3	0.0	0.0019	18.1	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.15	gi|390938480|ref|YP_006402218.1|	-	0.0021	17.7	0.1	0.0024	17.5	0.1	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.20	gi|390938480|ref|YP_006402218.1|	-	0.0022	18.3	0.0	0.0026	18.1	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
DUF2250	PF10007.9	gi|390938480|ref|YP_006402218.1|	-	0.0028	17.7	0.1	0.003	17.6	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_12	PF08461.10	gi|390938480|ref|YP_006402218.1|	-	0.0034	17.3	0.1	0.0044	16.9	0.1	1.2	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
TrmB	PF01978.19	gi|390938480|ref|YP_006402218.1|	-	0.0068	16.3	0.0	0.0079	16.1	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
LexA_DNA_bind	PF01726.16	gi|390938480|ref|YP_006402218.1|	-	0.0078	16.0	0.1	0.01	15.6	0.1	1.1	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|390938480|ref|YP_006402218.1|	-	0.0096	15.7	0.0	0.013	15.3	0.0	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_28	PF13518.6	gi|390938480|ref|YP_006402218.1|	-	0.014	15.5	0.0	0.026	14.7	0.0	1.6	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|390938480|ref|YP_006402218.1|	-	0.026	13.9	0.1	0.051	13.0	0.0	1.5	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF2336	PF10098.9	gi|390938480|ref|YP_006402218.1|	-	0.033	13.7	0.0	0.04	13.4	0.0	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2336)
HTH_23	PF13384.6	gi|390938480|ref|YP_006402218.1|	-	0.039	13.8	0.0	0.057	13.2	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF2089	PF09862.9	gi|390938480|ref|YP_006402218.1|	-	0.059	13.4	0.0	0.084	12.9	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
DprA_WH	PF17782.1	gi|390938480|ref|YP_006402218.1|	-	0.074	13.2	0.0	0.088	12.9	0.0	1.1	1	0	0	1	1	1	0	DprA	winged	helix	domain
HTH_Mga	PF08280.11	gi|390938480|ref|YP_006402218.1|	-	0.078	13.0	0.0	0.095	12.7	0.0	1.1	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_DeoR	PF08220.12	gi|390938480|ref|YP_006402218.1|	-	0.087	12.6	0.0	0.1	12.3	0.0	1.2	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
GntR	PF00392.21	gi|390938480|ref|YP_006402218.1|	-	0.099	12.3	0.1	0.13	12.0	0.1	1.3	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
CTP_transf_like	PF01467.26	gi|390938481|ref|YP_006402219.1|	-	5.4e-10	39.6	0.0	3.9e-09	36.9	0.0	2.0	1	1	0	1	1	1	1	Cytidylyltransferase-like
HIGH_NTase1	PF05636.11	gi|390938481|ref|YP_006402219.1|	-	3.8e-05	23.1	0.0	0.0027	17.0	0.1	2.0	2	0	0	2	2	2	2	HIGH	Nucleotidyl	Transferase
CxxCxxCC	PF03692.15	gi|390938482|ref|YP_006402220.1|	-	1.3e-07	32.2	0.0	2.5e-07	31.3	0.0	1.6	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
BPL_LplA_LipB	PF03099.19	gi|390938483|ref|YP_006402221.1|	-	5.7e-12	45.7	0.1	1e-11	44.9	0.1	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
BPL_C	PF02237.17	gi|390938483|ref|YP_006402221.1|	-	5.4e-07	29.4	0.1	1.3e-06	28.2	0.1	1.6	1	0	0	1	1	1	1	Biotin	protein	ligase	C	terminal	domain
PmbA_TldD	PF01523.16	gi|390938484|ref|YP_006402222.1|	-	6.9e-46	157.3	0.0	8.7e-46	157.0	0.0	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
MEIOC	PF15189.6	gi|390938484|ref|YP_006402222.1|	-	0.037	13.6	0.1	0.064	12.9	0.1	1.3	1	0	0	1	1	1	0	Meiosis-specific	coiled-coil	domain-containing	protein	MEIOC
PmbA_TldD	PF01523.16	gi|390938485|ref|YP_006402223.1|	-	1.1e-56	192.8	0.1	1.3e-56	192.5	0.1	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
DEAD	PF00270.29	gi|390938486|ref|YP_006402224.1|	-	1.5e-27	96.5	0.0	9e-27	94.0	0.0	1.9	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|390938486|ref|YP_006402224.1|	-	7.3e-18	64.9	0.0	3.1e-16	59.7	0.0	2.8	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
DUF1998	PF09369.10	gi|390938486|ref|YP_006402224.1|	-	3e-13	50.3	0.4	7.8e-13	49.0	0.4	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
ResIII	PF04851.15	gi|390938486|ref|YP_006402224.1|	-	4e-05	23.7	0.0	7.5e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.6	gi|390938486|ref|YP_006402224.1|	-	0.052	13.3	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|390938486|ref|YP_006402224.1|	-	0.069	13.5	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Flavi_DEAD	PF07652.14	gi|390938486|ref|YP_006402224.1|	-	0.18	11.8	0.0	0.57	10.2	0.0	1.9	2	0	0	2	2	2	0	Flavivirus	DEAD	domain
MgtE	PF01769.16	gi|390938487|ref|YP_006402225.1|	-	1.6	9.1	12.3	6.1	7.2	12.3	2.1	1	1	0	1	1	1	0	Divalent	cation	transporter
ABC_tran	PF00005.27	gi|390938488|ref|YP_006402226.1|	-	2.1e-42	144.9	0.0	4.8e-20	72.5	0.0	2.7	2	1	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|390938488|ref|YP_006402226.1|	-	1.1e-22	81.3	7.5	2.1e-07	31.1	0.0	4.1	3	1	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390938488|ref|YP_006402226.1|	-	6.2e-12	45.4	2.4	0.064	12.7	0.0	4.1	4	0	0	4	4	4	4	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|390938488|ref|YP_006402226.1|	-	1e-10	41.2	1.7	0.00033	20.3	0.1	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|390938488|ref|YP_006402226.1|	-	8.8e-10	38.8	0.0	0.024	14.4	0.2	3.5	3	1	1	4	4	3	3	AAA	ATPase	domain
AAA_23	PF13476.6	gi|390938488|ref|YP_006402226.1|	-	5.7e-09	36.8	4.1	0.00066	20.2	0.1	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|390938488|ref|YP_006402226.1|	-	3.4e-08	34.0	1.1	0.0013	19.1	0.4	2.9	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_30	PF13604.6	gi|390938488|ref|YP_006402226.1|	-	1.2e-07	31.6	4.1	0.0011	18.8	0.3	3.5	2	2	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|390938488|ref|YP_006402226.1|	-	1.8e-07	31.5	3.4	0.0013	19.0	0.2	3.4	3	1	0	3	3	3	2	AAA	domain
AAA_18	PF13238.6	gi|390938488|ref|YP_006402226.1|	-	2.2e-06	28.3	0.4	0.0022	18.6	0.1	3.1	3	0	0	3	3	2	1	AAA	domain
NTPase_1	PF03266.15	gi|390938488|ref|YP_006402226.1|	-	4.2e-06	26.8	7.3	0.046	13.6	0.3	3.9	4	0	0	4	4	4	2	NTPase
NACHT	PF05729.12	gi|390938488|ref|YP_006402226.1|	-	6.2e-06	26.2	0.9	0.02	14.8	0.3	2.7	3	0	0	3	3	2	2	NACHT	domain
AAA	PF00004.29	gi|390938488|ref|YP_006402226.1|	-	2.1e-05	25.0	3.7	0.02	15.3	0.8	3.8	3	1	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SSE	PF00437.20	gi|390938488|ref|YP_006402226.1|	-	2.4e-05	23.5	0.2	0.0054	15.8	0.1	2.2	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
RsgA_GTPase	PF03193.16	gi|390938488|ref|YP_006402226.1|	-	2.6e-05	24.2	0.8	0.17	11.8	0.3	2.4	2	0	0	2	2	2	2	RsgA	GTPase
AAA_28	PF13521.6	gi|390938488|ref|YP_006402226.1|	-	8.9e-05	22.8	2.8	0.062	13.5	0.7	3.1	3	0	0	3	3	3	1	AAA	domain
Mg_chelatase	PF01078.21	gi|390938488|ref|YP_006402226.1|	-	9.3e-05	21.9	0.9	0.0072	15.7	0.0	2.5	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
MeaB	PF03308.16	gi|390938488|ref|YP_006402226.1|	-	9.7e-05	21.5	0.8	0.084	11.8	0.0	2.4	2	0	0	2	2	2	2	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ATPase_2	PF01637.18	gi|390938488|ref|YP_006402226.1|	-	0.00026	21.0	0.4	0.057	13.3	0.0	3.0	3	0	0	3	3	3	1	ATPase	domain	predominantly	from	Archaea
AAA_33	PF13671.6	gi|390938488|ref|YP_006402226.1|	-	0.00032	20.9	4.0	0.023	14.9	0.3	3.2	3	0	0	3	3	3	1	AAA	domain
Rad17	PF03215.15	gi|390938488|ref|YP_006402226.1|	-	0.00033	20.6	0.4	0.096	12.6	0.0	2.4	2	0	0	2	2	2	1	Rad17	P-loop	domain
RNA_helicase	PF00910.22	gi|390938488|ref|YP_006402226.1|	-	0.00039	20.8	0.1	0.25	11.8	0.1	2.4	2	0	0	2	2	2	1	RNA	helicase
PRK	PF00485.18	gi|390938488|ref|YP_006402226.1|	-	0.00048	19.9	1.1	0.082	12.6	0.2	2.4	2	0	0	2	2	2	1	Phosphoribulokinase	/	Uridine	kinase	family
AAA_24	PF13479.6	gi|390938488|ref|YP_006402226.1|	-	0.0007	19.4	1.2	0.037	13.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|390938488|ref|YP_006402226.1|	-	0.00079	19.4	3.2	0.17	11.9	0.3	3.4	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
APS_kinase	PF01583.20	gi|390938488|ref|YP_006402226.1|	-	0.0008	19.3	1.5	0.036	14.0	0.1	2.4	2	0	0	2	2	2	1	Adenylylsulphate	kinase
IstB_IS21	PF01695.17	gi|390938488|ref|YP_006402226.1|	-	0.00086	19.1	3.6	0.03	14.1	0.1	3.1	4	0	0	4	4	3	1	IstB-like	ATP	binding	protein
AAA_14	PF13173.6	gi|390938488|ref|YP_006402226.1|	-	0.001	19.1	0.9	0.34	10.9	0.1	3.1	3	0	0	3	3	3	1	AAA	domain
Zeta_toxin	PF06414.12	gi|390938488|ref|YP_006402226.1|	-	0.0016	17.8	2.8	2.5	7.4	0.2	3.5	4	0	0	4	4	4	2	Zeta	toxin
AAA_25	PF13481.6	gi|390938488|ref|YP_006402226.1|	-	0.0017	18.0	4.8	0.16	11.5	0.1	3.6	4	0	0	4	4	4	1	AAA	domain
TsaE	PF02367.17	gi|390938488|ref|YP_006402226.1|	-	0.0017	18.3	1.5	0.31	11.0	0.0	2.5	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_13	PF13166.6	gi|390938488|ref|YP_006402226.1|	-	0.0047	15.6	0.1	2.2	6.8	0.1	2.9	3	0	0	3	3	3	1	AAA	domain
ABC_ATPase	PF09818.9	gi|390938488|ref|YP_006402226.1|	-	0.0074	15.1	1.8	2.3	6.9	0.0	2.7	3	0	0	3	3	3	2	Predicted	ATPase	of	the	ABC	class
cobW	PF02492.19	gi|390938488|ref|YP_006402226.1|	-	0.0074	15.9	7.6	0.1	12.2	0.6	2.5	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_27	PF13514.6	gi|390938488|ref|YP_006402226.1|	-	0.0095	15.6	0.3	3.1	7.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|390938488|ref|YP_006402226.1|	-	0.013	15.5	4.1	2.3	8.3	0.3	2.8	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.22	gi|390938488|ref|YP_006402226.1|	-	0.016	14.4	4.8	0.65	9.1	0.1	2.4	3	0	0	3	3	2	0	NB-ARC	domain
PhoH	PF02562.16	gi|390938488|ref|YP_006402226.1|	-	0.019	14.4	0.9	0.33	10.4	0.1	2.2	2	0	0	2	2	2	0	PhoH-like	protein
dNK	PF01712.19	gi|390938488|ref|YP_006402226.1|	-	0.03	14.2	0.8	0.93	9.3	0.1	2.2	2	0	0	2	2	2	0	Deoxynucleoside	kinase
PhdYeFM_antitox	PF02604.19	gi|390938488|ref|YP_006402226.1|	-	0.034	14.0	3.6	0.9	9.4	0.2	2.8	3	0	0	3	3	2	0	Antitoxin	Phd_YefM,	type	II	toxin-antitoxin	system
SbcCD_C	PF13558.6	gi|390938488|ref|YP_006402226.1|	-	0.037	14.3	0.1	2.4	8.5	0.0	2.9	2	2	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
MobB	PF03205.14	gi|390938488|ref|YP_006402226.1|	-	0.039	13.9	3.1	0.35	10.8	0.2	2.5	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_19	PF13245.6	gi|390938488|ref|YP_006402226.1|	-	0.058	13.7	2.8	0.31	11.4	0.1	2.5	2	0	0	2	2	2	0	AAA	domain
PIF1	PF05970.14	gi|390938488|ref|YP_006402226.1|	-	0.064	12.4	0.6	0.73	8.9	0.0	2.3	2	0	0	2	2	2	0	PIF1-like	helicase
MukB	PF04310.12	gi|390938488|ref|YP_006402226.1|	-	0.093	12.5	0.4	0.54	10.0	0.1	2.1	2	0	0	2	2	2	0	MukB	N-terminal
ATP_bind_1	PF03029.17	gi|390938488|ref|YP_006402226.1|	-	0.1	12.4	1.8	1.1	9.0	0.3	2.4	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
KAP_NTPase	PF07693.14	gi|390938488|ref|YP_006402226.1|	-	0.11	11.8	1.1	3.1	7.0	0.0	2.5	3	0	0	3	3	2	0	KAP	family	P-loop	domain
AAA_PrkA	PF08298.11	gi|390938488|ref|YP_006402226.1|	-	0.13	11.1	0.1	1.7	7.5	0.0	2.2	2	0	0	2	2	2	0	PrkA	AAA	domain
Sigma54_activat	PF00158.26	gi|390938488|ref|YP_006402226.1|	-	0.2	11.4	0.3	2.3	7.9	0.1	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
ATPase	PF06745.13	gi|390938488|ref|YP_006402226.1|	-	0.23	10.8	1.8	0.58	9.5	0.1	2.2	2	0	0	2	2	2	0	KaiC
Cytidylate_kin	PF02224.18	gi|390938488|ref|YP_006402226.1|	-	0.23	11.1	2.2	0.85	9.3	0.3	2.3	2	0	0	2	2	2	0	Cytidylate	kinase
TIP49	PF06068.13	gi|390938488|ref|YP_006402226.1|	-	0.25	10.5	0.3	0.61	9.2	0.1	1.7	2	0	0	2	2	1	0	TIP49	P-loop	domain
AAA_10	PF12846.7	gi|390938488|ref|YP_006402226.1|	-	0.28	10.1	1.0	37	3.1	0.1	2.9	3	0	0	3	3	3	0	AAA-like	domain
AAA_7	PF12775.7	gi|390938488|ref|YP_006402226.1|	-	0.31	10.5	1.9	1.9	8.0	0.1	2.3	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
Thymidylate_kin	PF02223.17	gi|390938488|ref|YP_006402226.1|	-	0.36	10.5	1.2	23	4.6	0.1	2.5	2	0	0	2	2	2	0	Thymidylate	kinase
DUF2075	PF09848.9	gi|390938488|ref|YP_006402226.1|	-	0.43	9.8	0.7	3.5	6.8	0.6	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
PduV-EutP	PF10662.9	gi|390938488|ref|YP_006402226.1|	-	0.45	10.3	3.5	0.57	9.9	0.2	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_17	PF13207.6	gi|390938488|ref|YP_006402226.1|	-	1.2	9.5	3.9	7.9	6.9	0.3	2.7	3	0	0	3	3	2	0	AAA	domain
CbiA	PF01656.23	gi|390938488|ref|YP_006402226.1|	-	7.7	6.6	7.7	0.76	9.8	1.0	2.4	2	0	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ECF-ribofla_trS	PF07155.12	gi|390938489|ref|YP_006402227.1|	-	1.5e-28	99.9	22.5	5.3e-22	78.6	11.1	2.1	1	1	1	2	2	2	2	ECF-type	riboflavin	transporter,	S	component
DUF4728	PF15860.5	gi|390938489|ref|YP_006402227.1|	-	0.32	11.7	5.9	0.96	10.2	1.4	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4728)
PspC	PF04024.12	gi|390938489|ref|YP_006402227.1|	-	2.4	8.0	0.0	2.4	8.0	0.0	3.7	3	1	1	4	4	4	0	PspC	domain
NUDIX	PF00293.28	gi|390938490|ref|YP_006402228.1|	-	2.9e-23	82.3	0.0	3.7e-23	82.0	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.6	gi|390938490|ref|YP_006402228.1|	-	4.1e-05	23.5	0.0	6.3e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	NUDIX	domain
DUF4916	PF16262.5	gi|390938490|ref|YP_006402228.1|	-	0.047	13.2	0.0	0.17	11.4	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4916)
Baculo_LEF-10	PF07206.11	gi|390938490|ref|YP_006402228.1|	-	0.087	13.0	0.1	0.16	12.1	0.1	1.4	1	0	0	1	1	1	0	Baculovirus	late	expression	factor	10	(LEF-10)
FMN_red	PF03358.15	gi|390938491|ref|YP_006402229.1|	-	1.7e-27	96.1	0.0	2.4e-27	95.6	0.0	1.2	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|390938491|ref|YP_006402229.1|	-	3.7e-12	46.4	0.0	6.1e-12	45.7	0.0	1.4	1	0	0	1	1	1	1	Flavodoxin-like	fold
DUF357	PF04010.13	gi|390938492|ref|YP_006402230.1|	-	4.8e-18	65.0	0.4	7.9e-18	64.3	0.4	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
CTP_transf_like	PF01467.26	gi|390938492|ref|YP_006402230.1|	-	1.5e-13	51.1	0.0	4.2e-13	49.7	0.0	1.6	2	0	0	2	2	2	1	Cytidylyltransferase-like
AA_permease_2	PF13520.6	gi|390938494|ref|YP_006402232.1|	-	8.8e-15	54.5	68.5	1.5e-14	53.7	59.4	2.1	1	1	1	2	2	2	2	Amino	acid	permease
AA_permease	PF00324.21	gi|390938494|ref|YP_006402232.1|	-	5.6e-08	31.8	64.7	1.8e-06	26.9	64.7	3.1	1	1	0	1	1	1	1	Amino	acid	permease
PALP	PF00291.25	gi|390938495|ref|YP_006402233.1|	-	1.1e-40	139.9	0.0	1.3e-40	139.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
FtsA	PF14450.6	gi|390938495|ref|YP_006402233.1|	-	0.031	14.7	0.0	0.07	13.6	0.0	1.7	1	1	0	1	1	1	0	Cell	division	protein	FtsA
TFX_C	PF14601.6	gi|390938496|ref|YP_006402234.1|	-	3.9e-12	46.0	0.0	5.6e-12	45.5	0.0	1.3	1	0	0	1	1	1	1	DNA_binding	protein,	TFX,	C-term
Sigma70_r4	PF04545.16	gi|390938496|ref|YP_006402234.1|	-	1.5e-10	40.4	1.4	2.8e-10	39.5	1.4	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
GerE	PF00196.19	gi|390938496|ref|YP_006402234.1|	-	4.7e-10	38.9	0.3	8.2e-10	38.1	0.3	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_3	PF01381.22	gi|390938496|ref|YP_006402234.1|	-	1.2e-07	31.7	0.4	2.6e-07	30.6	0.4	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_23	PF13384.6	gi|390938496|ref|YP_006402234.1|	-	2.5e-07	30.3	0.5	5.4e-07	29.2	0.3	1.7	1	1	0	1	1	1	1	Homeodomain-like	domain
HTH_19	PF12844.7	gi|390938496|ref|YP_006402234.1|	-	1.3e-06	28.3	0.2	5.2e-06	26.4	0.1	1.9	1	1	1	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|390938496|ref|YP_006402234.1|	-	3.6e-06	26.5	0.5	8.4e-06	25.4	0.1	1.9	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_38	PF13936.6	gi|390938496|ref|YP_006402234.1|	-	8.7e-06	25.4	0.1	2e-05	24.3	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|390938496|ref|YP_006402234.1|	-	8.2e-05	22.7	0.1	0.00019	21.5	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|390938496|ref|YP_006402234.1|	-	0.00015	21.5	0.3	0.00036	20.3	0.2	1.7	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|390938496|ref|YP_006402234.1|	-	0.00016	21.9	0.1	0.00028	21.2	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|390938496|ref|YP_006402234.1|	-	0.00071	19.5	0.0	0.0013	18.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|390938496|ref|YP_006402234.1|	-	0.00078	19.0	0.1	0.0019	17.7	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_7	PF02796.15	gi|390938496|ref|YP_006402234.1|	-	0.0011	19.0	0.9	0.0038	17.3	0.2	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
MarR_2	PF12802.7	gi|390938496|ref|YP_006402234.1|	-	0.0014	18.5	0.1	0.0058	16.5	0.1	1.9	2	0	0	2	2	2	1	MarR	family
HTH_10	PF04967.12	gi|390938496|ref|YP_006402234.1|	-	0.0025	17.6	3.3	0.091	12.6	0.4	3.2	3	1	0	3	3	3	1	HTH	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|390938496|ref|YP_006402234.1|	-	0.0032	17.4	0.0	0.013	15.4	0.0	1.9	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|390938496|ref|YP_006402234.1|	-	0.0036	17.2	0.1	0.0083	16.0	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.6	gi|390938496|ref|YP_006402234.1|	-	0.0042	17.1	0.0	0.0084	16.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_17	PF12728.7	gi|390938496|ref|YP_006402234.1|	-	0.0046	17.1	0.1	0.0094	16.1	0.1	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
TnsD	PF15978.5	gi|390938496|ref|YP_006402234.1|	-	0.011	14.8	0.1	0.013	14.5	0.1	1.1	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
MarR	PF01047.22	gi|390938496|ref|YP_006402234.1|	-	0.025	14.5	0.0	0.049	13.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_8	PF02954.19	gi|390938496|ref|YP_006402234.1|	-	0.029	14.1	2.1	0.076	12.8	0.2	2.5	2	1	1	3	3	3	0	Bacterial	regulatory	protein,	Fis	family
UPF0122	PF04297.14	gi|390938496|ref|YP_006402234.1|	-	0.037	14.3	0.2	0.056	13.7	0.2	1.2	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_IclR	PF09339.10	gi|390938496|ref|YP_006402234.1|	-	0.052	13.3	0.0	0.12	12.2	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Sigma70_ECF	PF07638.11	gi|390938496|ref|YP_006402234.1|	-	0.085	12.7	0.1	0.15	11.9	0.1	1.4	2	0	0	2	2	1	0	ECF	sigma	factor
MerR-DNA-bind	PF09278.11	gi|390938496|ref|YP_006402234.1|	-	0.12	13.0	2.2	0.16	12.5	0.7	1.8	2	0	0	2	2	2	0	MerR,	DNA	binding
NUMOD1	PF07453.13	gi|390938496|ref|YP_006402234.1|	-	0.16	12.2	0.3	0.5	10.7	0.1	1.9	2	0	0	2	2	2	0	NUMOD1	domain
OTCace_N	PF02729.21	gi|390938497|ref|YP_006402235.1|	-	2e-40	138.2	0.0	3.4e-40	137.5	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|390938497|ref|YP_006402235.1|	-	1.5e-27	96.6	0.0	2.3e-27	96.0	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
DUF4917	PF16263.5	gi|390938497|ref|YP_006402235.1|	-	0.045	13.1	0.0	0.061	12.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4917)
Amidohydro_1	PF01979.20	gi|390938498|ref|YP_006402236.1|	-	6.6e-23	81.6	0.0	2.2e-22	79.8	0.0	2.0	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|390938498|ref|YP_006402236.1|	-	1.1e-15	58.0	0.3	1.1e-07	31.7	0.0	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
Amidohydro_2	PF04909.14	gi|390938498|ref|YP_006402236.1|	-	0.02	14.7	0.0	0.04	13.7	0.0	1.4	1	1	0	1	1	1	0	Amidohydrolase
Amelogenin	PF02948.15	gi|390938498|ref|YP_006402236.1|	-	0.15	12.7	0.0	0.3	11.7	0.0	1.4	1	0	0	1	1	1	0	Amelogenin
Ald_Xan_dh_C2	PF02738.18	gi|390938499|ref|YP_006402237.1|	-	5.1e-175	583.1	0.1	6.2e-175	582.8	0.1	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|390938499|ref|YP_006402237.1|	-	1.1e-18	67.6	0.0	3e-18	66.2	0.0	1.8	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
FAD_binding_5	PF00941.21	gi|390938500|ref|YP_006402238.1|	-	8.9e-54	181.8	0.0	1.3e-53	181.2	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|390938500|ref|YP_006402238.1|	-	6.8e-29	100.1	0.0	1e-28	99.5	0.0	1.3	1	0	0	1	1	1	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
Cytidylate_kin	PF02224.18	gi|390938500|ref|YP_006402238.1|	-	0.068	12.9	0.1	0.12	12.1	0.1	1.4	1	0	0	1	1	1	0	Cytidylate	kinase
Fer2_2	PF01799.20	gi|390938501|ref|YP_006402239.1|	-	1.5e-21	76.2	0.0	1.5e-21	76.2	0.0	1.4	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|390938501|ref|YP_006402239.1|	-	1.2e-06	28.4	2.0	1.7e-06	27.9	0.1	2.0	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|390938501|ref|YP_006402239.1|	-	5.9e-06	26.3	0.1	8.9e-06	25.7	0.1	1.3	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|390938501|ref|YP_006402239.1|	-	0.0094	16.0	0.7	0.088	12.9	0.8	2.4	1	1	1	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_BFD	PF04324.15	gi|390938501|ref|YP_006402239.1|	-	0.4	11.1	4.8	5.7	7.4	0.2	3.5	3	1	1	4	4	4	0	BFD-like	[2Fe-2S]	binding	domain
Ald_Xan_dh_C2	PF02738.18	gi|390938502|ref|YP_006402240.1|	-	6e-135	450.8	0.0	7.9e-135	450.4	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|390938502|ref|YP_006402240.1|	-	6.5e-19	68.3	0.0	1.5e-18	67.2	0.0	1.6	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
FAD_binding_5	PF00941.21	gi|390938503|ref|YP_006402241.1|	-	2.3e-55	186.9	0.0	3.6e-55	186.3	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|390938503|ref|YP_006402241.1|	-	2.3e-22	79.1	0.2	3.6e-22	78.5	0.2	1.3	1	0	0	1	1	1	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
Fer2_2	PF01799.20	gi|390938504|ref|YP_006402242.1|	-	3.1e-26	91.2	0.1	3.1e-26	91.2	0.1	1.5	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|390938504|ref|YP_006402242.1|	-	1.4e-08	34.6	0.9	1.4e-08	34.6	0.9	2.2	1	1	1	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|390938504|ref|YP_006402242.1|	-	3.9e-05	23.6	0.4	5.9e-05	23.0	0.4	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DHODB_Fe-S_bind	PF10418.9	gi|390938504|ref|YP_006402242.1|	-	0.011	15.5	2.6	0.011	15.5	2.6	1.9	2	0	0	2	2	2	0	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
Fer2_4	PF13510.6	gi|390938504|ref|YP_006402242.1|	-	0.096	12.7	2.4	0.94	9.6	2.3	2.5	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
ThiS	PF02597.20	gi|390938505|ref|YP_006402243.1|	-	2.6e-08	34.4	0.1	2.7e-08	34.3	0.1	1.1	1	0	0	1	1	1	1	ThiS	family
TGS	PF02824.21	gi|390938505|ref|YP_006402243.1|	-	0.00015	21.7	0.2	0.00027	20.9	0.2	1.3	1	0	0	1	1	1	1	TGS	domain
Ub-Mut7C	PF14451.6	gi|390938505|ref|YP_006402243.1|	-	0.032	14.1	0.0	0.065	13.1	0.0	1.5	1	0	0	1	1	1	0	Mut7-C	ubiquitin
AA_permease_2	PF13520.6	gi|390938506|ref|YP_006402244.1|	-	7e-21	74.5	54.4	1e-20	74.0	54.4	1.2	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|390938506|ref|YP_006402244.1|	-	5.3e-16	58.3	51.6	1.5e-15	56.7	51.6	1.7	1	1	0	1	1	1	1	Amino	acid	permease
Pox_EPC_I2-L1	PF12575.8	gi|390938506|ref|YP_006402244.1|	-	1.5	9.1	0.0	1.5	9.1	0.0	3.5	3	1	1	4	4	4	0	Poxvirus	entry	protein	complex	L1	and	I2
Metallophos_3	PF14582.6	gi|390938507|ref|YP_006402245.1|	-	1e-05	25.0	2.5	0.00044	19.7	0.1	2.9	3	0	0	3	3	3	2	Metallophosphoesterase,	calcineurin	superfamily
Metallophos_2	PF12850.7	gi|390938507|ref|YP_006402245.1|	-	2.8e-05	24.4	0.2	0.01	16.0	0.3	3.1	2	1	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|390938507|ref|YP_006402245.1|	-	0.00061	20.3	0.0	0.003	18.1	0.0	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Aminotran_3	PF00202.21	gi|390938509|ref|YP_006402247.1|	-	4e-102	341.9	0.0	4.9e-102	341.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
DUF2200	PF09966.9	gi|390938509|ref|YP_006402247.1|	-	0.12	12.5	0.5	1.7	8.8	0.1	2.6	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2200)
Amidohydro_3	PF07969.11	gi|390938510|ref|YP_006402248.1|	-	6.2e-109	365.6	0.0	7e-109	365.4	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|390938510|ref|YP_006402248.1|	-	2.6e-17	63.2	0.0	5.2e-13	49.0	0.0	2.5	2	1	0	2	2	2	2	Amidohydrolase	family
Flavodoxin_5	PF12724.7	gi|390938511|ref|YP_006402249.1|	-	1.7e-07	31.6	0.0	2.1e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_3	PF12641.7	gi|390938511|ref|YP_006402249.1|	-	6.3e-06	26.0	0.0	0.0029	17.3	0.0	2.4	1	1	1	2	2	2	2	Flavodoxin	domain
Flavodoxin_1	PF00258.25	gi|390938511|ref|YP_006402249.1|	-	0.14	12.3	0.0	0.6	10.3	0.0	1.9	1	1	1	2	2	2	0	Flavodoxin
POR	PF01558.18	gi|390938512|ref|YP_006402250.1|	-	4.9e-32	111.4	0.2	5.7e-32	111.2	0.2	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_C	PF02775.21	gi|390938513|ref|YP_006402251.1|	-	1.9e-28	99.2	0.0	3.4e-28	98.4	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|390938513|ref|YP_006402251.1|	-	1.9e-18	67.1	0.0	3.1e-18	66.4	0.0	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.27	gi|390938513|ref|YP_006402251.1|	-	2.7e-10	39.6	12.1	2e-06	27.3	3.7	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
TPP_enzyme_N	PF02776.18	gi|390938513|ref|YP_006402251.1|	-	1.4e-06	28.0	0.4	8.3e-05	22.3	0.1	2.3	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_2	PF12797.7	gi|390938513|ref|YP_006402251.1|	-	6.3e-06	26.0	18.5	0.0005	20.0	3.9	2.8	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390938513|ref|YP_006402251.1|	-	1.8e-05	25.2	9.8	0.016	15.8	1.5	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|390938513|ref|YP_006402251.1|	-	5.1e-05	23.2	18.3	0.0079	16.2	2.4	3.0	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|390938513|ref|YP_006402251.1|	-	0.00015	21.8	10.6	0.0003	20.8	10.6	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|390938513|ref|YP_006402251.1|	-	0.00019	21.5	11.5	0.00043	20.4	11.5	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|390938513|ref|YP_006402251.1|	-	0.00022	21.5	12.8	0.094	13.3	2.0	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|390938513|ref|YP_006402251.1|	-	0.00091	19.3	11.9	0.0027	17.8	11.9	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Transketolase_C	PF02780.20	gi|390938513|ref|YP_006402251.1|	-	0.016	15.1	0.0	0.076	12.9	0.0	2.1	2	0	0	2	2	2	0	Transketolase,	C-terminal	domain
DXP_synthase_N	PF13292.6	gi|390938513|ref|YP_006402251.1|	-	0.017	14.3	0.1	0.028	13.6	0.1	1.2	1	0	0	1	1	1	0	1-deoxy-D-xylulose-5-phosphate	synthase
Fer4_3	PF12798.7	gi|390938513|ref|YP_006402251.1|	-	0.12	13.4	13.6	0.1	13.6	4.3	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|390938513|ref|YP_006402251.1|	-	2	9.2	11.2	3.1	8.6	1.7	2.5	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.6	gi|390938513|ref|YP_006402251.1|	-	2.1	9.0	13.9	94	3.7	3.4	2.6	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|390938513|ref|YP_006402251.1|	-	2.7	9.0	11.3	1.4	9.9	1.2	2.5	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|390938513|ref|YP_006402251.1|	-	7.9	7.0	13.6	13	6.3	3.2	2.4	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
ATP-grasp_5	PF13549.6	gi|390938514|ref|YP_006402252.1|	-	5.6e-76	254.9	0.0	6.8e-76	254.6	0.0	1.0	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_2	PF08442.10	gi|390938514|ref|YP_006402252.1|	-	0.001	18.7	0.0	0.0012	18.5	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|390938514|ref|YP_006402252.1|	-	0.03	13.8	0.1	0.062	12.8	0.0	1.4	1	1	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.22	gi|390938514|ref|YP_006402252.1|	-	0.14	11.7	0.0	0.29	10.7	0.0	1.5	2	0	0	2	2	2	0	ATP-grasp	domain
Acetyltransf_1	PF00583.25	gi|390938515|ref|YP_006402253.1|	-	7.3e-18	64.9	0.1	1.3e-17	64.2	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|390938515|ref|YP_006402253.1|	-	8.2e-16	58.1	0.0	1e-15	57.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|390938515|ref|YP_006402253.1|	-	6.9e-11	42.4	0.1	1.3e-10	41.5	0.1	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|390938515|ref|YP_006402253.1|	-	7.4e-09	35.9	0.1	9.7e-09	35.5	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|390938515|ref|YP_006402253.1|	-	4.2e-07	30.2	0.0	5.5e-07	29.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|390938515|ref|YP_006402253.1|	-	1.1e-06	28.4	0.0	1.7e-05	24.6	0.0	2.0	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain,	PanZ
FR47	PF08445.10	gi|390938515|ref|YP_006402253.1|	-	3.4e-06	26.9	0.0	5.1e-06	26.4	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|390938515|ref|YP_006402253.1|	-	1.1e-05	25.5	0.1	0.00026	21.1	0.1	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|390938515|ref|YP_006402253.1|	-	0.00073	19.6	0.0	0.0014	18.7	0.0	1.5	1	1	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_15	PF17013.5	gi|390938515|ref|YP_006402253.1|	-	0.00075	19.0	0.3	0.0029	17.1	0.3	1.8	1	1	0	1	1	1	1	Putative	acetyl-transferase
Acetyltransf_8	PF13523.6	gi|390938515|ref|YP_006402253.1|	-	0.001	18.8	0.0	0.0013	18.4	0.0	1.2	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|390938515|ref|YP_006402253.1|	-	0.0037	16.9	0.1	0.0048	16.5	0.1	1.2	1	0	0	1	1	1	1	GNAT	acetyltransferase
ATP_bind_3	PF01171.20	gi|390938516|ref|YP_006402254.1|	-	2.5e-19	69.7	0.0	4.8e-19	68.8	0.0	1.4	1	1	0	1	1	1	1	PP-loop	family
PAPS_reduct	PF01507.19	gi|390938516|ref|YP_006402254.1|	-	3.9e-05	23.8	0.0	6.5e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
RecR	PF02132.15	gi|390938516|ref|YP_006402254.1|	-	0.0015	18.1	0.8	0.0015	18.1	0.8	3.0	3	0	0	3	3	3	1	RecR	protein
CTU2	PF10288.9	gi|390938516|ref|YP_006402254.1|	-	0.0066	16.7	0.2	0.021	15.0	0.0	1.9	2	0	0	2	2	2	1	Cytoplasmic	tRNA	2-thiolation	protein	2
Vps36-NZF-N	PF16988.5	gi|390938516|ref|YP_006402254.1|	-	0.061	12.7	0.7	6.6	6.2	0.0	2.7	2	0	0	2	2	2	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
tRNA_Me_trans	PF03054.16	gi|390938516|ref|YP_006402254.1|	-	0.12	11.2	0.2	0.21	10.4	0.2	1.4	1	1	0	1	1	1	0	tRNA	methyl	transferase
QueC	PF06508.13	gi|390938516|ref|YP_006402254.1|	-	0.12	11.8	0.1	0.33	10.4	0.0	1.8	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
C1_2	PF03107.16	gi|390938516|ref|YP_006402254.1|	-	0.13	12.6	4.6	1.1	9.6	0.1	3.3	3	0	0	3	3	3	0	C1	domain
zf-C2H2_3	PF13878.6	gi|390938516|ref|YP_006402254.1|	-	4.7	7.1	5.0	14	5.6	0.1	2.9	3	0	0	3	3	3	0	zinc-finger	of	acetyl-transferase	ESCO
C5HCH	PF17982.1	gi|390938516|ref|YP_006402254.1|	-	8.3	6.7	8.1	7.2	6.9	0.3	2.7	3	0	0	3	3	3	0	NSD	Cys-His	rich	domain
CN_hydrolase	PF00795.22	gi|390938517|ref|YP_006402255.1|	-	1.5e-30	106.4	0.0	1.7e-30	106.3	0.0	1.0	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
HATPase_c	PF02518.26	gi|390938517|ref|YP_006402255.1|	-	0.07	13.6	0.0	0.084	13.4	0.0	1.3	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DpnD-PcfM	PF14207.6	gi|390938517|ref|YP_006402255.1|	-	0.087	12.7	0.0	0.19	11.7	0.0	1.6	1	0	0	1	1	1	0	DpnD/PcfM-like	protein
HMG-CoA_red	PF00368.18	gi|390938518|ref|YP_006402256.1|	-	2.4e-106	355.8	6.5	2.8e-106	355.6	6.5	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
HypA	PF01155.19	gi|390938519|ref|YP_006402257.1|	-	3.9e-17	62.3	0.0	5.2e-17	61.9	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Lar_restr_allev	PF14354.6	gi|390938519|ref|YP_006402257.1|	-	0.00021	21.6	0.0	0.12	12.8	0.0	2.2	2	0	0	2	2	2	2	Restriction	alleviation	protein	Lar
TFIIS_C	PF01096.18	gi|390938519|ref|YP_006402257.1|	-	0.0038	17.1	1.6	1	9.3	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_4	PF13717.6	gi|390938519|ref|YP_006402257.1|	-	0.0061	16.5	0.2	3.4	7.7	0.1	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
UPF0547	PF10571.9	gi|390938519|ref|YP_006402257.1|	-	0.01	15.9	3.3	0.47	10.6	0.0	2.5	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DNA_RNApol_7kD	PF03604.13	gi|390938519|ref|YP_006402257.1|	-	0.014	15.0	0.1	1.7	8.4	0.0	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF2387	PF09526.10	gi|390938519|ref|YP_006402257.1|	-	0.016	15.3	0.9	1.1	9.5	0.0	2.2	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
TF_Zn_Ribbon	PF08271.12	gi|390938519|ref|YP_006402257.1|	-	0.022	14.3	0.6	0.21	11.1	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Ribosomal_S27e	PF01667.17	gi|390938519|ref|YP_006402257.1|	-	0.022	14.4	0.0	4	7.2	0.0	2.2	2	0	0	2	2	2	0	Ribosomal	protein	S27
PhnA_Zn_Ribbon	PF08274.12	gi|390938519|ref|YP_006402257.1|	-	0.024	14.6	2.5	4.5	7.3	0.1	2.5	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Zn_Tnp_IS1595	PF12760.7	gi|390938519|ref|YP_006402257.1|	-	0.025	14.5	1.5	0.3	11.1	0.1	2.2	1	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
CpXC	PF14353.6	gi|390938519|ref|YP_006402257.1|	-	0.026	14.6	0.8	1.1	9.3	0.0	2.2	1	1	1	2	2	2	0	CpXC	protein
zf-ribbon_3	PF13248.6	gi|390938519|ref|YP_006402257.1|	-	0.034	13.6	1.1	0.78	9.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-CSL	PF05207.13	gi|390938519|ref|YP_006402257.1|	-	0.039	13.7	0.3	0.082	12.6	0.3	1.5	1	1	0	1	1	1	0	CSL	zinc	finger
RNA_POL_M_15KD	PF02150.16	gi|390938519|ref|YP_006402257.1|	-	0.04	13.8	1.3	0.86	9.5	0.0	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_2	PF13240.6	gi|390938519|ref|YP_006402257.1|	-	0.07	12.9	0.9	1.9	8.3	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|390938519|ref|YP_006402257.1|	-	0.083	12.6	0.7	0.32	10.7	0.1	2.0	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Zn-ribbon_8	PF09723.10	gi|390938519|ref|YP_006402257.1|	-	0.18	12.0	3.3	3.4	7.9	3.1	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
DUF35_N	PF12172.8	gi|390938519|ref|YP_006402257.1|	-	0.31	10.9	1.4	0.6	10.1	0.1	2.0	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-H2C2_2	PF13465.6	gi|390938519|ref|YP_006402257.1|	-	0.41	11.2	1.8	26	5.5	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-C2HC_2	PF13913.6	gi|390938519|ref|YP_006402257.1|	-	1.7	8.7	5.5	2	8.4	0.4	2.4	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
ParA	PF10609.9	gi|390938520|ref|YP_006402258.1|	-	5.8e-41	140.6	0.0	9.2e-41	139.9	0.0	1.2	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|390938520|ref|YP_006402258.1|	-	1.6e-11	44.3	0.0	2.5e-11	43.7	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|390938520|ref|YP_006402258.1|	-	0.0022	18.0	0.0	0.0064	16.4	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|390938520|ref|YP_006402258.1|	-	0.0025	17.1	0.1	0.017	14.4	0.0	1.9	2	0	0	2	2	2	1	Anion-transporting	ATPase
UPRTase	PF14681.6	gi|390938521|ref|YP_006402259.1|	-	2.2e-33	115.5	0.0	2.6e-33	115.2	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|390938521|ref|YP_006402259.1|	-	4.3e-12	45.8	0.0	1.6e-11	44.0	0.0	1.7	1	1	1	2	2	2	1	Phosphoribosyl	transferase	domain
DEAD	PF00270.29	gi|390938522|ref|YP_006402260.1|	-	5.3e-23	81.7	0.0	9.6e-23	80.8	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|390938522|ref|YP_006402260.1|	-	2.3e-07	31.1	0.0	7e-07	29.6	0.0	1.9	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.6	gi|390938522|ref|YP_006402260.1|	-	4.9e-07	30.2	0.4	2e-06	28.3	0.4	2.2	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|390938522|ref|YP_006402260.1|	-	0.00096	19.2	0.0	0.0041	17.2	0.0	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
AAA_30	PF13604.6	gi|390938522|ref|YP_006402260.1|	-	0.019	14.7	0.0	0.043	13.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DNA_pol_lambd_f	PF10391.9	gi|390938522|ref|YP_006402260.1|	-	0.15	11.9	0.0	0.62	9.9	0.0	2.0	2	0	0	2	2	2	0	Fingers	domain	of	DNA	polymerase	lambda
PBP_like	PF12727.7	gi|390938523|ref|YP_006402261.1|	-	2e-52	177.2	0.0	3.2e-52	176.5	0.0	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
MoeA_N	PF03453.17	gi|390938523|ref|YP_006402261.1|	-	1.3e-39	135.5	0.2	3.3e-39	134.2	0.2	1.7	2	0	0	2	2	2	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|390938523|ref|YP_006402261.1|	-	6e-25	87.6	0.0	3.5e-24	85.1	0.0	2.1	2	0	0	2	2	2	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|390938523|ref|YP_006402261.1|	-	4.9e-11	42.6	0.0	1.4e-10	41.1	0.0	1.9	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
Phos_pyr_kin	PF08543.12	gi|390938524|ref|YP_006402262.1|	-	2.7e-93	311.9	0.3	3.7e-93	311.4	0.3	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
ThiP_synth	PF10120.9	gi|390938524|ref|YP_006402262.1|	-	5.6e-54	182.2	2.4	5.6e-54	182.2	2.4	2.1	2	0	0	2	2	2	1	Thiamine-phosphate	synthase
PfkB	PF00294.24	gi|390938524|ref|YP_006402262.1|	-	7.9e-10	38.5	0.1	1.6e-09	37.5	0.1	1.5	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Thi4	PF01946.17	gi|390938525|ref|YP_006402263.1|	-	2.1e-75	253.0	0.4	2.4e-75	252.8	0.4	1.0	1	0	0	1	1	1	1	Thi4	family
FAD_binding_2	PF00890.24	gi|390938525|ref|YP_006402263.1|	-	3e-14	52.9	4.5	3.4e-06	26.4	1.4	3.1	3	0	0	3	3	3	3	FAD	binding	domain
DAO	PF01266.24	gi|390938525|ref|YP_006402263.1|	-	8.1e-12	45.4	1.1	3.4e-07	30.2	0.3	2.1	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|390938525|ref|YP_006402263.1|	-	6.1e-09	35.7	0.4	9.6e-09	35.1	0.4	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|390938525|ref|YP_006402263.1|	-	6.1e-08	32.8	1.1	1.9e-07	31.2	1.1	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|390938525|ref|YP_006402263.1|	-	1.5e-07	31.0	0.1	2.3e-07	30.4	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|390938525|ref|YP_006402263.1|	-	4.4e-07	29.4	0.7	5.4e-07	29.1	0.6	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|390938525|ref|YP_006402263.1|	-	1.4e-05	24.0	1.3	2.4e-05	23.2	1.3	1.3	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|390938525|ref|YP_006402263.1|	-	0.0005	19.4	0.0	0.00096	18.5	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|390938525|ref|YP_006402263.1|	-	0.00063	20.3	0.6	0.0019	18.7	0.6	1.8	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|390938525|ref|YP_006402263.1|	-	0.00088	18.7	0.2	0.0017	17.7	0.2	1.5	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
GIDA	PF01134.22	gi|390938525|ref|YP_006402263.1|	-	0.00091	18.4	0.4	0.0017	17.5	0.4	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Shikimate_DH	PF01488.20	gi|390938525|ref|YP_006402263.1|	-	0.0028	17.7	0.0	0.0053	16.8	0.0	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Lycopene_cycl	PF05834.12	gi|390938525|ref|YP_006402263.1|	-	0.0083	15.2	0.0	0.023	13.8	0.0	1.7	2	0	0	2	2	2	1	Lycopene	cyclase	protein
K_oxygenase	PF13434.6	gi|390938525|ref|YP_006402263.1|	-	0.018	14.2	0.0	0.025	13.7	0.0	1.2	1	0	0	1	1	1	0	L-lysine	6-monooxygenase	(NADPH-requiring)
ThiF	PF00899.21	gi|390938525|ref|YP_006402263.1|	-	0.033	13.6	0.0	0.07	12.5	0.0	1.5	2	0	0	2	2	2	0	ThiF	family
Glu_dehyd_C	PF16912.5	gi|390938525|ref|YP_006402263.1|	-	0.078	12.4	0.1	0.83	9.1	0.0	2.4	2	1	0	2	2	2	0	Glucose	dehydrogenase	C-terminus
NAD_binding_9	PF13454.6	gi|390938525|ref|YP_006402263.1|	-	0.14	12.1	0.2	0.34	10.9	0.2	1.7	1	0	0	1	1	1	0	FAD-NAD(P)-binding
Trp_halogenase	PF04820.14	gi|390938525|ref|YP_006402263.1|	-	0.17	10.7	0.4	0.29	9.9	0.4	1.4	1	0	0	1	1	1	0	Tryptophan	halogenase
MFS_1	PF07690.16	gi|390938527|ref|YP_006402265.1|	-	1.8e-47	162.0	37.2	4.6e-36	124.5	33.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|390938527|ref|YP_006402265.1|	-	4.9e-19	68.5	22.8	2.3e-13	49.8	8.1	2.1	2	0	0	2	2	2	2	Sugar	(and	other)	transporter
ATG22	PF11700.8	gi|390938527|ref|YP_006402265.1|	-	1.3e-06	27.3	17.9	1.1e-05	24.3	4.7	2.3	2	0	0	2	2	2	2	Vacuole	effluxer	Atg22	like
E1-E2_ATPase	PF00122.20	gi|390938527|ref|YP_006402265.1|	-	0.097	12.2	0.2	0.097	12.2	0.2	3.0	4	0	0	4	4	4	0	E1-E2	ATPase
EpuA	PF11772.8	gi|390938527|ref|YP_006402265.1|	-	0.11	12.2	4.3	0.45	10.2	4.3	2.1	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	subunit	beta
OATP	PF03137.20	gi|390938527|ref|YP_006402265.1|	-	2.4	6.3	17.1	0.065	11.5	1.1	3.8	2	2	2	4	4	4	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
MFS_1_like	PF12832.7	gi|390938527|ref|YP_006402265.1|	-	8.1	5.2	18.4	0.077	11.8	2.9	3.3	2	2	1	3	3	3	0	MFS_1	like	family
Raffinose_syn	PF05691.12	gi|390938528|ref|YP_006402266.1|	-	1.3e-41	142.3	0.9	1e-25	89.7	0.4	3.6	1	1	1	2	2	2	2	Raffinose	synthase	or	seed	imbibition	protein	Sip1
Glyco_hydro_31	PF01055.26	gi|390938528|ref|YP_006402266.1|	-	0.00087	18.6	0.0	0.0012	18.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	31
PrgI	PF12666.7	gi|390938531|ref|YP_006402269.1|	-	0.01	16.5	0.2	0.018	15.8	0.2	1.4	1	1	0	1	1	1	0	PrgI	family	protein
RAP	PF08373.10	gi|390938531|ref|YP_006402269.1|	-	0.083	13.0	0.4	0.12	12.5	0.4	1.2	1	0	0	1	1	1	0	RAP	domain
AAA_10	PF12846.7	gi|390938532|ref|YP_006402270.1|	-	1.2e-12	47.4	0.0	1.3e-06	27.6	0.0	2.4	2	0	0	2	2	2	2	AAA-like	domain
DUF87	PF01935.17	gi|390938532|ref|YP_006402270.1|	-	4.4e-05	23.7	0.0	8e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|390938532|ref|YP_006402270.1|	-	9e-05	22.8	0.0	0.082	13.2	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|390938532|ref|YP_006402270.1|	-	0.0026	16.7	0.0	0.13	11.1	0.0	2.1	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF853	PF05872.12	gi|390938532|ref|YP_006402270.1|	-	0.02	13.5	0.0	0.064	11.8	0.0	1.7	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
MeaB	PF03308.16	gi|390938532|ref|YP_006402270.1|	-	0.073	12.0	0.0	0.16	10.9	0.0	1.5	1	1	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_16	PF13191.6	gi|390938532|ref|YP_006402270.1|	-	0.1	13.0	0.0	0.49	10.8	0.0	2.2	1	1	1	2	2	2	0	AAA	ATPase	domain
FtsK_SpoIIIE	PF01580.18	gi|390938532|ref|YP_006402270.1|	-	0.12	11.7	0.1	0.42	9.9	0.0	1.9	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
ABC_tran	PF00005.27	gi|390938532|ref|YP_006402270.1|	-	0.2	12.2	0.2	0.92	10.0	0.0	2.0	1	1	1	2	2	2	0	ABC	transporter
Fer4_NifH	PF00142.18	gi|390938532|ref|YP_006402270.1|	-	0.24	10.8	0.0	0.39	10.1	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
DUF1129	PF06570.11	gi|390938533|ref|YP_006402271.1|	-	0.057	12.9	0.8	0.074	12.5	0.7	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
DUF87	PF01935.17	gi|390938534|ref|YP_006402272.1|	-	3.1e-13	50.4	0.0	5.4e-13	49.6	0.0	1.4	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|390938534|ref|YP_006402272.1|	-	1.2e-12	47.5	0.0	4.6e-06	25.8	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|390938534|ref|YP_006402272.1|	-	4.5e-06	26.7	0.0	7.6e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
T4SS-DNA_transf	PF02534.14	gi|390938534|ref|YP_006402272.1|	-	7.4e-06	25.0	0.0	0.0056	15.5	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretory	system	Conjugative	DNA	transfer
AAA_22	PF13401.6	gi|390938534|ref|YP_006402272.1|	-	1.5e-05	25.3	0.0	0.012	15.9	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|390938534|ref|YP_006402272.1|	-	0.00024	20.9	0.0	0.0028	17.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|390938534|ref|YP_006402272.1|	-	0.0011	19.3	0.1	0.099	13.0	0.1	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
DUF853	PF05872.12	gi|390938534|ref|YP_006402272.1|	-	0.003	16.2	0.0	0.0047	15.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF853)
ABC_tran	PF00005.27	gi|390938534|ref|YP_006402272.1|	-	0.0043	17.6	0.0	0.011	16.2	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
AAA_10	PF12846.7	gi|390938534|ref|YP_006402272.1|	-	0.012	14.6	0.0	0.019	13.9	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
FtsK_SpoIIIE	PF01580.18	gi|390938534|ref|YP_006402272.1|	-	0.014	14.7	0.0	0.061	12.7	0.0	1.9	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_19	PF13245.6	gi|390938534|ref|YP_006402272.1|	-	0.038	14.3	0.1	0.3	11.4	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
DEAD	PF00270.29	gi|390938534|ref|YP_006402272.1|	-	0.071	12.9	0.0	0.2	11.4	0.0	1.8	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
T2SSE	PF00437.20	gi|390938534|ref|YP_006402272.1|	-	0.074	12.1	0.0	0.13	11.3	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|390938534|ref|YP_006402272.1|	-	0.13	12.2	0.1	0.27	11.1	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
DUF996	PF06195.13	gi|390938535|ref|YP_006402273.1|	-	3.3e-31	108.4	24.4	3.3e-31	108.4	24.4	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF996)
YIF1	PF03878.15	gi|390938535|ref|YP_006402273.1|	-	0.27	10.7	13.9	1.7	8.1	0.1	2.0	1	1	1	2	2	2	0	YIF1
MpPF26	PF07666.11	gi|390938535|ref|YP_006402273.1|	-	1	9.5	21.1	0.29	11.2	6.0	2.4	2	0	0	2	2	2	0	M	penetrans	paralogue	family	26
TMEM210	PF15195.6	gi|390938535|ref|YP_006402273.1|	-	1.5	9.2	3.8	0.8	10.1	0.4	2.2	2	0	0	2	2	2	0	TMEM210	family
DUF1761	PF08570.10	gi|390938535|ref|YP_006402273.1|	-	2.7	8.3	16.1	1.3	9.3	12.0	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1761)
PalH	PF08733.10	gi|390938535|ref|YP_006402273.1|	-	5	6.0	9.4	6.8	5.6	9.4	1.2	1	0	0	1	1	1	0	PalH/RIM21
PKD	PF00801.20	gi|390938536|ref|YP_006402274.1|	-	0.054	13.3	0.1	0.15	11.9	0.1	1.7	1	0	0	1	1	1	0	PKD	domain
Pilin_N	PF07790.11	gi|390938537|ref|YP_006402275.1|	-	0.16	12.9	4.9	0.29	12.1	4.8	1.7	1	1	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
T2SSE	PF00437.20	gi|390938538|ref|YP_006402276.1|	-	9.1e-38	129.9	0.0	1.4e-37	129.2	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
cobW	PF02492.19	gi|390938538|ref|YP_006402276.1|	-	0.00014	21.5	0.0	0.00031	20.4	0.0	1.6	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.6	gi|390938538|ref|YP_006402276.1|	-	0.00081	19.7	0.0	0.0032	17.7	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|390938538|ref|YP_006402276.1|	-	0.0017	18.8	0.0	0.003	18.0	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|390938538|ref|YP_006402276.1|	-	0.0033	17.2	0.0	0.0083	15.9	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|390938538|ref|YP_006402276.1|	-	0.0036	17.8	0.0	0.0061	17.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_25	PF13481.6	gi|390938538|ref|YP_006402276.1|	-	0.0046	16.6	0.0	0.012	15.2	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|390938538|ref|YP_006402276.1|	-	0.0083	16.1	0.0	0.018	15.0	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA	PF00004.29	gi|390938538|ref|YP_006402276.1|	-	0.0097	16.3	0.0	0.023	15.1	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.6	gi|390938538|ref|YP_006402276.1|	-	0.01	16.2	0.0	0.029	14.7	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|390938538|ref|YP_006402276.1|	-	0.012	15.1	0.0	0.023	14.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
FtsK_SpoIIIE	PF01580.18	gi|390938538|ref|YP_006402276.1|	-	0.018	14.4	0.0	0.035	13.4	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_5	PF07728.14	gi|390938538|ref|YP_006402276.1|	-	0.024	14.7	0.0	0.074	13.1	0.0	1.9	2	0	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.6	gi|390938538|ref|YP_006402276.1|	-	0.032	14.0	0.0	0.064	13.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|390938538|ref|YP_006402276.1|	-	0.036	14.6	0.0	0.079	13.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.18	gi|390938538|ref|YP_006402276.1|	-	0.037	13.8	0.0	0.059	13.1	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_33	PF13671.6	gi|390938538|ref|YP_006402276.1|	-	0.042	14.0	0.0	0.066	13.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_11	PF13086.6	gi|390938538|ref|YP_006402276.1|	-	0.057	13.2	0.0	0.08	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|390938538|ref|YP_006402276.1|	-	0.058	12.7	0.0	0.099	11.9	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
NB-ARC	PF00931.22	gi|390938538|ref|YP_006402276.1|	-	0.06	12.5	0.0	0.1	11.8	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_24	PF13479.6	gi|390938538|ref|YP_006402276.1|	-	0.06	13.1	0.0	0.096	12.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|390938538|ref|YP_006402276.1|	-	0.061	13.2	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	NTPase
AAA_23	PF13476.6	gi|390938538|ref|YP_006402276.1|	-	0.087	13.3	0.0	0.14	12.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Pox_A32	PF04665.12	gi|390938538|ref|YP_006402276.1|	-	0.17	11.3	0.0	0.31	10.5	0.0	1.3	1	0	0	1	1	1	0	Poxvirus	A32	protein
AAA_14	PF13173.6	gi|390938538|ref|YP_006402276.1|	-	0.18	11.9	0.0	0.37	10.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|390938538|ref|YP_006402276.1|	-	0.21	11.4	0.0	0.4	10.6	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
NapE	PF06796.11	gi|390938539|ref|YP_006402277.1|	-	0.054	13.0	2.3	2.1	7.9	0.2	3.0	2	0	0	2	2	2	0	Periplasmic	nitrate	reductase	protein	NapE
PsbT	PF01405.17	gi|390938539|ref|YP_006402277.1|	-	4.1	7.3	7.7	0.64	9.9	2.2	2.6	2	0	0	2	2	2	0	Photosystem	II	reaction	centre	T	protein
PIGA	PF08288.12	gi|390938541|ref|YP_006402279.1|	-	0.057	14.0	2.5	0.12	12.9	0.5	2.2	2	0	0	2	2	2	0	PIGA	(GPI	anchor	biosynthesis)
DDRGK	PF09756.9	gi|390938541|ref|YP_006402279.1|	-	0.23	11.0	0.0	0.35	10.4	0.0	1.2	1	0	0	1	1	1	0	DDRGK	domain
CitX	PF03802.14	gi|390938542|ref|YP_006402280.1|	-	0.037	13.8	0.2	0.057	13.2	0.2	1.2	1	0	0	1	1	1	0	Apo-citrate	lyase	phosphoribosyl-dephospho-CoA	transferase
PASTA	PF03793.19	gi|390938542|ref|YP_006402280.1|	-	0.11	12.4	0.4	3.7	7.5	0.0	2.9	2	1	1	3	3	3	0	PASTA	domain
DUF5446	PF17522.2	gi|390938542|ref|YP_006402280.1|	-	0.14	12.3	1.9	0.28	11.4	1.0	2.0	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5446)
MS_channel	PF00924.18	gi|390938543|ref|YP_006402281.1|	-	4.4e-48	163.6	2.4	4.4e-48	163.6	2.4	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|390938543|ref|YP_006402281.1|	-	0.00022	21.1	6.6	0.00022	21.1	6.6	2.6	2	0	0	2	2	2	1	Conserved	TM	helix
mCpol	PF18182.1	gi|390938543|ref|YP_006402281.1|	-	0.16	12.3	0.0	0.29	11.5	0.0	1.4	1	0	0	1	1	1	0	minimal	CRISPR	polymerase	domain
DUF432	PF04254.13	gi|390938544|ref|YP_006402282.1|	-	1.9e-30	105.6	0.1	2.4e-30	105.3	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF432)
ThiI	PF02568.14	gi|390938546|ref|YP_006402284.1|	-	2.9e-51	173.9	0.0	5.5e-51	173.0	0.0	1.5	2	0	0	2	2	2	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.17	gi|390938546|ref|YP_006402284.1|	-	3.6e-22	79.0	1.9	8.1e-22	77.9	1.9	1.6	1	0	0	1	1	1	1	THUMP	domain
Rhodanese	PF00581.20	gi|390938546|ref|YP_006402284.1|	-	1.2e-08	35.4	0.0	9.6e-08	32.5	0.0	2.3	1	1	0	1	1	1	1	Rhodanese-like	domain
QueC	PF06508.13	gi|390938546|ref|YP_006402284.1|	-	5.6e-06	26.0	0.0	0.0013	18.2	0.0	2.6	2	1	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
Diphthami_syn_2	PF01902.17	gi|390938546|ref|YP_006402284.1|	-	0.0014	18.2	0.2	0.0084	15.6	0.0	2.2	2	0	0	2	2	2	1	Diphthamide	synthase
ATP_bind_3	PF01171.20	gi|390938546|ref|YP_006402284.1|	-	0.012	15.4	0.0	0.049	13.4	0.0	1.9	1	1	0	1	1	1	0	PP-loop	family
tRNA_Me_trans	PF03054.16	gi|390938546|ref|YP_006402284.1|	-	0.09	11.5	0.0	0.14	10.9	0.0	1.3	1	0	0	1	1	1	0	tRNA	methyl	transferase
AAA	PF00004.29	gi|390938547|ref|YP_006402285.1|	-	3.3e-15	56.7	0.0	8.3e-15	55.4	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|390938547|ref|YP_006402285.1|	-	1.2e-09	38.3	0.2	2.9e-08	33.9	0.1	2.5	2	1	1	3	3	3	1	Rad17	P-loop	domain
RuvB_N	PF05496.12	gi|390938547|ref|YP_006402285.1|	-	1.2e-07	31.6	0.0	2.1e-07	30.8	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|390938547|ref|YP_006402285.1|	-	4.8e-07	30.3	0.2	2.8e-06	27.8	0.0	2.3	2	1	0	2	2	1	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|390938547|ref|YP_006402285.1|	-	1.5e-06	28.3	0.0	1.5e-05	25.0	0.0	2.5	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
DUF815	PF05673.13	gi|390938547|ref|YP_006402285.1|	-	4.4e-06	26.0	0.0	7.8e-06	25.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_14	PF13173.6	gi|390938547|ref|YP_006402285.1|	-	1.7e-05	24.9	0.0	3.7e-05	23.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_assoc_2	PF16193.5	gi|390938547|ref|YP_006402285.1|	-	3.7e-05	24.0	0.1	0.00016	21.9	0.0	2.1	2	0	0	2	2	1	1	AAA	C-terminal	domain
AAA_22	PF13401.6	gi|390938547|ref|YP_006402285.1|	-	6.2e-05	23.3	0.3	0.0088	16.3	0.1	3.3	2	1	1	3	3	3	1	AAA	domain
RFC1	PF08519.12	gi|390938547|ref|YP_006402285.1|	-	0.00015	21.9	0.0	0.0003	21.0	0.0	1.5	1	0	0	1	1	1	1	Replication	factor	RFC1	C	terminal	domain
AAA_33	PF13671.6	gi|390938547|ref|YP_006402285.1|	-	0.00017	21.8	0.0	0.00037	20.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
DNA_pol3_delta	PF06144.13	gi|390938547|ref|YP_006402285.1|	-	0.00039	20.2	0.0	0.00068	19.5	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_28	PF13521.6	gi|390938547|ref|YP_006402285.1|	-	0.001	19.4	0.0	0.0026	18.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|390938547|ref|YP_006402285.1|	-	0.0011	18.7	0.0	0.0021	17.8	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Viral_helicase1	PF01443.18	gi|390938547|ref|YP_006402285.1|	-	0.0016	18.3	0.0	0.0035	17.1	0.0	1.6	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
DUF1361	PF07099.11	gi|390938547|ref|YP_006402285.1|	-	0.0019	18.2	0.0	0.0033	17.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1361)
AAA_2	PF07724.14	gi|390938547|ref|YP_006402285.1|	-	0.0023	18.1	0.0	0.0047	17.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_18	PF13238.6	gi|390938547|ref|YP_006402285.1|	-	0.0027	18.3	0.0	0.011	16.2	0.0	2.1	1	0	0	1	1	1	1	AAA	domain
AAA_11	PF13086.6	gi|390938547|ref|YP_006402285.1|	-	0.0034	17.2	0.0	0.035	13.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
DNA_pol3_delta2	PF13177.6	gi|390938547|ref|YP_006402285.1|	-	0.0066	16.2	0.0	0.19	11.5	0.1	2.4	1	1	1	2	2	2	1	DNA	polymerase	III,	delta	subunit
NTPase_1	PF03266.15	gi|390938547|ref|YP_006402285.1|	-	0.017	15.0	0.1	5.2	6.9	0.0	2.4	1	1	1	2	2	2	0	NTPase
AAA_6	PF12774.7	gi|390938547|ref|YP_006402285.1|	-	0.017	14.1	0.0	0.035	13.1	0.0	1.4	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
NACHT	PF05729.12	gi|390938547|ref|YP_006402285.1|	-	0.017	15.0	0.2	0.25	11.3	0.0	2.8	2	1	1	3	3	3	0	NACHT	domain
AAA_7	PF12775.7	gi|390938547|ref|YP_006402285.1|	-	0.018	14.6	0.0	0.031	13.8	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_25	PF13481.6	gi|390938547|ref|YP_006402285.1|	-	0.02	14.5	0.0	0.057	13.0	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.6	gi|390938547|ref|YP_006402285.1|	-	0.022	15.2	0.1	0.082	13.3	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
TniB	PF05621.11	gi|390938547|ref|YP_006402285.1|	-	0.024	14.1	0.0	0.075	12.4	0.0	1.8	2	0	0	2	2	1	0	Bacterial	TniB	protein
ABC_tran	PF00005.27	gi|390938547|ref|YP_006402285.1|	-	0.028	14.9	0.0	0.14	12.7	0.0	2.0	1	1	1	2	2	2	0	ABC	transporter
AAA_23	PF13476.6	gi|390938547|ref|YP_006402285.1|	-	0.033	14.7	0.0	0.13	12.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
TraC_F_IV	PF11130.8	gi|390938547|ref|YP_006402285.1|	-	0.037	13.6	0.0	3.4	7.2	0.0	2.3	2	1	0	2	2	2	0	F	pilus	assembly	Type-IV	secretion	system	for	plasmid	transfer
RNA_helicase	PF00910.22	gi|390938547|ref|YP_006402285.1|	-	0.038	14.4	0.0	0.11	12.9	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
TIP49	PF06068.13	gi|390938547|ref|YP_006402285.1|	-	0.045	13.0	0.2	0.11	11.7	0.0	1.7	2	1	0	2	2	1	0	TIP49	P-loop	domain
Zeta_toxin	PF06414.12	gi|390938547|ref|YP_006402285.1|	-	0.05	12.9	0.0	0.091	12.0	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
NB-ARC	PF00931.22	gi|390938547|ref|YP_006402285.1|	-	0.07	12.3	0.0	0.25	10.5	0.0	2.0	2	1	0	2	2	1	0	NB-ARC	domain
TsaE	PF02367.17	gi|390938547|ref|YP_006402285.1|	-	0.078	13.0	0.0	0.17	11.9	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NAPRTase_C	PF17956.1	gi|390938547|ref|YP_006402285.1|	-	0.12	12.8	0.1	1.9	9.0	0.0	2.3	2	0	0	2	2	2	0	Nicotinate	phosphoribosyltransferase	C-terminal	domain
Rep_fac_C	PF08542.11	gi|390938548|ref|YP_006402286.1|	-	2.3e-26	92.0	0.2	1.1e-25	89.9	0.0	2.1	2	0	0	2	2	2	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.29	gi|390938548|ref|YP_006402286.1|	-	1.8e-15	57.5	0.0	3.5e-15	56.6	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|390938548|ref|YP_006402286.1|	-	1.3e-14	54.3	0.0	1.3e-10	41.3	0.1	2.3	1	1	1	2	2	2	2	DNA	polymerase	III,	delta	subunit
RuvB_N	PF05496.12	gi|390938548|ref|YP_006402286.1|	-	5e-08	32.9	0.0	1.4e-07	31.4	0.0	1.8	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Rad17	PF03215.15	gi|390938548|ref|YP_006402286.1|	-	8e-07	29.2	0.0	1.9e-06	27.9	0.0	1.7	2	0	0	2	2	1	1	Rad17	P-loop	domain
DNA_pol3_delta	PF06144.13	gi|390938548|ref|YP_006402286.1|	-	2.7e-06	27.3	0.0	7.8e-06	25.8	0.0	1.7	2	0	0	2	2	2	1	DNA	polymerase	III,	delta	subunit
AAA_14	PF13173.6	gi|390938548|ref|YP_006402286.1|	-	2.9e-06	27.4	0.1	5.9e-05	23.1	0.0	2.4	1	1	1	2	2	2	1	AAA	domain
AAA_assoc_2	PF16193.5	gi|390938548|ref|YP_006402286.1|	-	3.5e-06	27.2	0.3	1.6e-05	25.2	0.1	2.3	2	0	0	2	2	1	1	AAA	C-terminal	domain
AAA_16	PF13191.6	gi|390938548|ref|YP_006402286.1|	-	3.7e-06	27.4	0.3	0.0015	18.9	0.0	2.7	2	1	1	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|390938548|ref|YP_006402286.1|	-	1.1e-05	25.7	1.7	0.15	12.3	0.0	3.1	2	2	1	3	3	3	2	AAA	domain
AAA_5	PF07728.14	gi|390938548|ref|YP_006402286.1|	-	1.3e-05	25.3	0.6	9.6e-05	22.4	0.0	2.7	3	2	0	3	3	2	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.11	gi|390938548|ref|YP_006402286.1|	-	4.4e-05	23.3	0.0	0.00011	22.1	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|390938548|ref|YP_006402286.1|	-	0.00011	21.7	0.0	0.0046	16.4	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.17	gi|390938548|ref|YP_006402286.1|	-	0.00012	21.8	0.0	0.00025	20.8	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
PhoH	PF02562.16	gi|390938548|ref|YP_006402286.1|	-	0.00022	20.8	0.1	0.054	12.9	0.0	2.5	1	1	1	2	2	2	1	PhoH-like	protein
AAA_18	PF13238.6	gi|390938548|ref|YP_006402286.1|	-	0.00023	21.7	0.0	0.00067	20.2	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
ResIII	PF04851.15	gi|390938548|ref|YP_006402286.1|	-	0.00092	19.3	0.0	0.056	13.4	0.0	2.3	1	1	1	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_7	PF12775.7	gi|390938548|ref|YP_006402286.1|	-	0.0017	17.9	0.0	0.0029	17.2	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
TniB	PF05621.11	gi|390938548|ref|YP_006402286.1|	-	0.0019	17.6	0.1	0.32	10.4	0.0	2.9	2	1	1	3	3	3	1	Bacterial	TniB	protein
TIP49	PF06068.13	gi|390938548|ref|YP_006402286.1|	-	0.0041	16.4	0.0	0.009	15.2	0.0	1.6	2	0	0	2	2	2	1	TIP49	P-loop	domain
NTPase_1	PF03266.15	gi|390938548|ref|YP_006402286.1|	-	0.0044	17.0	0.0	0.34	10.8	0.0	2.6	1	1	1	2	2	2	1	NTPase
DNA_pol3_gamma3	PF12169.8	gi|390938548|ref|YP_006402286.1|	-	0.0048	16.8	0.3	0.85	9.5	0.0	3.2	3	1	0	3	3	3	1	DNA	polymerase	III	subunits	gamma	and	tau	domain	III
Sigma54_activat	PF00158.26	gi|390938548|ref|YP_006402286.1|	-	0.0055	16.4	0.1	0.29	10.8	0.0	2.7	3	0	0	3	3	3	1	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|390938548|ref|YP_006402286.1|	-	0.0057	16.5	0.0	0.014	15.2	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_2	PF07724.14	gi|390938548|ref|YP_006402286.1|	-	0.0063	16.6	0.0	0.013	15.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
CbiA	PF01656.23	gi|390938548|ref|YP_006402286.1|	-	0.0066	16.5	0.0	0.012	15.6	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF815	PF05673.13	gi|390938548|ref|YP_006402286.1|	-	0.0068	15.6	0.0	0.011	14.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_33	PF13671.6	gi|390938548|ref|YP_006402286.1|	-	0.015	15.4	0.0	0.036	14.2	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|390938548|ref|YP_006402286.1|	-	0.018	14.6	0.3	0.049	13.2	0.1	1.9	2	1	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|390938548|ref|YP_006402286.1|	-	0.029	14.1	0.0	0.072	12.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|390938548|ref|YP_006402286.1|	-	0.03	14.3	0.0	0.059	13.3	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_23	PF13476.6	gi|390938548|ref|YP_006402286.1|	-	0.034	14.7	0.0	0.068	13.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|390938548|ref|YP_006402286.1|	-	0.04	13.8	0.0	0.11	12.4	0.0	1.7	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_19	PF13245.6	gi|390938548|ref|YP_006402286.1|	-	0.042	14.2	0.3	0.25	11.7	0.1	2.2	1	1	1	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|390938548|ref|YP_006402286.1|	-	0.043	14.2	0.0	0.086	13.2	0.0	1.7	1	1	0	1	1	1	0	RNA	helicase
FtsK_SpoIIIE	PF01580.18	gi|390938548|ref|YP_006402286.1|	-	0.045	13.1	0.3	0.32	10.3	0.0	2.4	3	1	0	3	3	3	0	FtsK/SpoIIIE	family
AAA_30	PF13604.6	gi|390938548|ref|YP_006402286.1|	-	0.049	13.4	0.6	0.3	10.8	0.1	2.5	2	1	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|390938548|ref|YP_006402286.1|	-	0.05	13.5	0.0	0.47	10.3	0.0	2.4	1	1	0	1	1	1	0	NACHT	domain
AAA_28	PF13521.6	gi|390938548|ref|YP_006402286.1|	-	0.062	13.5	0.0	0.19	12.0	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|390938548|ref|YP_006402286.1|	-	0.07	12.2	0.0	0.23	10.5	0.0	1.8	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Torsin	PF06309.11	gi|390938548|ref|YP_006402286.1|	-	0.077	13.1	0.0	0.17	12.0	0.0	1.6	1	0	0	1	1	1	0	Torsin
NB-ARC	PF00931.22	gi|390938548|ref|YP_006402286.1|	-	0.091	11.9	0.0	0.15	11.2	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
Viral_helicase1	PF01443.18	gi|390938548|ref|YP_006402286.1|	-	0.1	12.3	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
DUF2075	PF09848.9	gi|390938548|ref|YP_006402286.1|	-	0.14	11.4	0.0	0.63	9.2	0.0	1.9	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Sld5	PF05916.11	gi|390938549|ref|YP_006402287.1|	-	1.3e-05	25.6	0.4	1.9e-05	25.1	0.4	1.3	1	0	0	1	1	1	1	GINS	complex	protein
FMN_bind_2	PF04299.12	gi|390938549|ref|YP_006402287.1|	-	0.082	12.6	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	Putative	FMN-binding	domain
MCM	PF00493.23	gi|390938550|ref|YP_006402288.1|	-	1.1e-100	335.3	0.0	1.7e-100	334.8	0.0	1.2	1	0	0	1	1	1	1	MCM	P-loop	domain
MCM_OB	PF17207.3	gi|390938550|ref|YP_006402288.1|	-	1e-36	125.6	0.0	3e-36	124.1	0.0	1.7	2	0	0	2	2	2	1	MCM	OB	domain
MCM_lid	PF17855.1	gi|390938550|ref|YP_006402288.1|	-	1.3e-27	96.0	4.1	1.7e-27	95.6	2.2	2.2	2	0	0	2	2	2	1	MCM	AAA-lid	domain
MCM_N	PF14551.6	gi|390938550|ref|YP_006402288.1|	-	3.3e-19	69.4	0.2	1.2e-18	67.5	0.1	2.1	2	0	0	2	2	2	1	MCM	N-terminal	domain
AAA_5	PF07728.14	gi|390938550|ref|YP_006402288.1|	-	6.5e-09	35.9	0.0	1.5e-08	34.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|390938550|ref|YP_006402288.1|	-	4.5e-06	26.2	0.0	0.0008	18.9	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_3	PF07726.11	gi|390938550|ref|YP_006402288.1|	-	0.0003	20.7	0.0	0.00072	19.4	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|390938550|ref|YP_006402288.1|	-	0.0045	16.7	0.1	0.046	13.4	0.1	2.5	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_16	PF13191.6	gi|390938550|ref|YP_006402288.1|	-	0.069	13.5	0.2	0.22	11.9	0.2	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
tRNA_anti-like	PF12869.7	gi|390938550|ref|YP_006402288.1|	-	0.083	12.5	0.0	0.18	11.4	0.0	1.5	1	0	0	1	1	1	0	tRNA_anti-like
RuvB_C	PF05491.13	gi|390938551|ref|YP_006402289.1|	-	0.05	13.5	0.0	0.075	12.9	0.0	1.2	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
4HBT	PF03061.22	gi|390938552|ref|YP_006402290.1|	-	0.00059	20.1	0.0	0.00079	19.7	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
TFIIB	PF00382.19	gi|390938553|ref|YP_006402291.1|	-	1.6e-06	28.1	0.6	6.6e-06	26.1	0.0	2.0	2	0	0	2	2	2	1	Transcription	factor	TFIIB	repeat
HTH_24	PF13412.6	gi|390938553|ref|YP_006402291.1|	-	0.11	12.1	0.3	20	4.9	0.0	3.5	4	0	0	4	4	4	0	Winged	helix-turn-helix	DNA-binding
E1-E2_ATPase	PF00122.20	gi|390938554|ref|YP_006402292.1|	-	2.1e-57	193.5	1.6	2.1e-57	193.5	1.6	3.0	4	0	0	4	4	4	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|390938554|ref|YP_006402292.1|	-	8.6e-45	152.7	2.4	8.6e-45	152.7	2.4	2.4	3	0	0	3	3	3	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|390938554|ref|YP_006402292.1|	-	1.6e-24	87.3	0.3	9.2e-24	84.9	0.3	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.26	gi|390938554|ref|YP_006402292.1|	-	2.7e-22	78.2	0.0	5.5e-22	77.2	0.0	1.5	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Cation_ATPase	PF13246.6	gi|390938554|ref|YP_006402292.1|	-	2.8e-13	49.7	0.0	7.3e-13	48.4	0.0	1.7	1	0	0	1	1	1	1	Cation	transport	ATPase	(P-type)
Hydrolase_3	PF08282.12	gi|390938554|ref|YP_006402292.1|	-	0.00012	21.9	0.2	0.002	17.9	0.2	2.4	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|390938554|ref|YP_006402292.1|	-	0.00078	19.9	0.0	0.0021	18.5	0.0	1.8	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
VIT1	PF01988.19	gi|390938555|ref|YP_006402293.1|	-	0.12	12.2	2.4	0.13	12.1	2.4	1.0	1	0	0	1	1	1	0	VIT	family
GatD_N	PF18195.1	gi|390938556|ref|YP_006402294.1|	-	0.069	12.5	0.0	0.11	11.9	0.0	1.4	1	0	0	1	1	1	0	GatD	N-terminal	domain
HAD_2	PF13419.6	gi|390938558|ref|YP_006402296.1|	-	4.4e-18	66.0	0.0	5.8e-18	65.6	0.0	1.3	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|390938558|ref|YP_006402296.1|	-	2.4e-12	47.6	0.0	1.6e-11	44.9	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|390938558|ref|YP_006402296.1|	-	2e-05	24.5	0.0	4.6e-05	23.4	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase_6	PF13344.6	gi|390938558|ref|YP_006402296.1|	-	0.016	15.3	0.0	0.04	14.0	0.0	1.6	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|390938558|ref|YP_006402296.1|	-	0.16	12.3	0.0	0.23	11.8	0.0	1.4	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Glycos_transf_4	PF00953.21	gi|390938561|ref|YP_006402299.1|	-	2e-30	105.8	12.9	2e-30	105.8	12.9	2.3	2	1	1	3	3	3	1	Glycosyl	transferase	family	4
DUF2244	PF10003.9	gi|390938561|ref|YP_006402299.1|	-	7	6.3	12.3	2.2	8.0	3.3	2.6	2	0	0	2	2	2	0	Integral	membrane	protein	(DUF2244)
Herpes_UL73	PF03554.13	gi|390938561|ref|YP_006402299.1|	-	8.7	6.4	7.3	16	5.6	2.2	2.5	2	0	0	2	2	2	0	UL73	viral	envelope	glycoprotein
ERCC4	PF02732.15	gi|390938562|ref|YP_006402300.1|	-	8.9e-15	55.2	0.0	1.4e-14	54.6	0.0	1.2	1	0	0	1	1	1	1	ERCC4	domain
HHH_2	PF12826.7	gi|390938562|ref|YP_006402300.1|	-	9.1e-12	44.9	0.0	1.9e-11	43.9	0.0	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|390938562|ref|YP_006402300.1|	-	1.3e-10	41.7	0.3	6.7e-10	39.4	0.1	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|390938562|ref|YP_006402300.1|	-	2.5e-07	30.2	0.1	3.8e-06	26.5	0.0	2.7	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
RNA_pol_A_CTD	PF03118.15	gi|390938562|ref|YP_006402300.1|	-	0.0072	16.1	0.1	0.018	14.8	0.1	1.6	1	0	0	1	1	1	1	Bacterial	RNA	polymerase,	alpha	chain	C	terminal	domain
HHH_3	PF12836.7	gi|390938562|ref|YP_006402300.1|	-	0.038	14.3	0.1	0.28	11.5	0.0	1.9	1	1	0	1	1	1	0	Helix-hairpin-helix	motif
Pex2_Pex12	PF04757.14	gi|390938562|ref|YP_006402300.1|	-	0.083	12.5	0.0	0.1	12.1	0.0	1.2	1	0	0	1	1	1	0	Pex2	/	Pex12	amino	terminal	region
NAD_binding_2	PF03446.15	gi|390938563|ref|YP_006402301.1|	-	4.3e-18	66.0	0.0	6.6e-18	65.4	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Shikimate_DH	PF01488.20	gi|390938563|ref|YP_006402301.1|	-	1.3e-07	31.8	0.0	2.1e-07	31.0	0.0	1.2	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|390938563|ref|YP_006402301.1|	-	8.9e-05	23.0	0.0	0.00016	22.2	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Epimerase	PF01370.21	gi|390938563|ref|YP_006402301.1|	-	0.00028	20.4	0.0	0.00041	19.9	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.18	gi|390938563|ref|YP_006402301.1|	-	0.0025	17.7	0.1	0.005	16.8	0.0	1.5	1	1	1	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_11	PF14833.6	gi|390938563|ref|YP_006402301.1|	-	0.0027	17.9	0.0	0.0047	17.2	0.0	1.4	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
NAD_binding_7	PF13241.6	gi|390938563|ref|YP_006402301.1|	-	0.016	15.7	0.0	0.026	14.9	0.0	1.3	1	0	0	1	1	1	0	Putative	NAD(P)-binding
FAD_binding_3	PF01494.19	gi|390938563|ref|YP_006402301.1|	-	0.037	13.3	0.0	0.063	12.5	0.0	1.3	1	0	0	1	1	1	0	FAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|390938563|ref|YP_006402301.1|	-	0.12	12.6	0.1	0.3	11.3	0.1	1.7	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Glyco_transf_21	PF13506.6	gi|390938563|ref|YP_006402301.1|	-	0.15	11.5	0.0	0.26	10.8	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	21
NmrA	PF05368.13	gi|390938563|ref|YP_006402301.1|	-	0.19	11.2	0.0	0.27	10.8	0.0	1.2	1	0	0	1	1	1	0	NmrA-like	family
XdhC_C	PF13478.6	gi|390938565|ref|YP_006402303.1|	-	1.6e-30	106.1	0.0	2.2e-30	105.7	0.0	1.2	1	0	0	1	1	1	1	XdhC	Rossmann	domain
XdhC_CoxI	PF02625.16	gi|390938565|ref|YP_006402303.1|	-	1.2e-17	63.9	0.0	1.9e-17	63.2	0.0	1.3	1	0	0	1	1	1	1	XdhC	and	CoxI	family
TrkA_N	PF02254.18	gi|390938565|ref|YP_006402303.1|	-	0.001	19.3	0.0	0.0015	18.7	0.0	1.3	1	0	0	1	1	1	1	TrkA-N	domain
UDPG_MGDP_dh_N	PF03721.14	gi|390938565|ref|YP_006402303.1|	-	0.015	14.9	0.0	0.022	14.3	0.0	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|390938565|ref|YP_006402303.1|	-	0.033	13.6	0.1	0.083	12.3	0.1	1.6	1	1	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|390938565|ref|YP_006402303.1|	-	0.094	12.6	0.0	0.14	12.1	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ERF	PF04404.12	gi|390938566|ref|YP_006402304.1|	-	0.14	12.0	0.0	0.14	12.0	0.0	1.2	1	0	0	1	1	1	0	ERF	superfamily
THUMP	PF02926.17	gi|390938567|ref|YP_006402305.1|	-	0.017	15.2	0.2	0.03	14.4	0.2	1.3	1	1	0	1	1	1	0	THUMP	domain
PhoU_div	PF01865.16	gi|390938568|ref|YP_006402306.1|	-	5.7e-11	42.2	6.6	1.6e-10	40.7	6.8	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF47
PhoU	PF01895.19	gi|390938568|ref|YP_006402306.1|	-	7.9e-06	26.3	9.0	0.0079	16.6	1.2	2.5	2	1	0	2	2	2	2	PhoU	domain
rRNA_proc-arch	PF13234.6	gi|390938568|ref|YP_006402306.1|	-	0.098	12.6	0.4	0.19	11.6	0.2	1.6	1	1	0	1	1	1	0	rRNA-processing	arch	domain
Aminotran_1_2	PF00155.21	gi|390938569|ref|YP_006402307.1|	-	1.3e-44	152.9	0.0	1.4e-44	152.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.7	gi|390938569|ref|YP_006402307.1|	-	2.2e-10	39.9	0.0	3.4e-10	39.3	0.0	1.2	1	0	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
Beta_elim_lyase	PF01212.21	gi|390938569|ref|YP_006402307.1|	-	0.0016	17.8	0.0	0.0025	17.2	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
VWA_CoxE	PF05762.14	gi|390938570|ref|YP_006402308.1|	-	6.3e-06	25.7	0.0	1.5e-05	24.5	0.0	1.6	1	1	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
VWA	PF00092.28	gi|390938570|ref|YP_006402308.1|	-	9.9e-06	25.9	0.0	2.2e-05	24.8	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|390938570|ref|YP_006402308.1|	-	4.5e-05	23.4	0.0	7.7e-05	22.7	0.0	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|390938570|ref|YP_006402308.1|	-	0.00013	22.6	0.0	0.00098	19.7	0.0	2.1	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
Nucleoporin_FG2	PF15967.5	gi|390938570|ref|YP_006402308.1|	-	0.42	9.1	0.6	0.57	8.6	0.6	1.1	1	0	0	1	1	1	0	Nucleoporin	FG	repeated	region
AAA_5	PF07728.14	gi|390938571|ref|YP_006402309.1|	-	1e-27	96.8	0.8	9.7e-27	93.6	0.0	2.8	3	1	0	4	4	4	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.11	gi|390938571|ref|YP_006402309.1|	-	2e-07	30.9	0.0	3.1e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_8	PF17868.1	gi|390938571|ref|YP_006402309.1|	-	4.1e-07	29.8	0.0	1.4e-06	28.1	0.0	1.9	1	0	0	1	1	1	1	AAA	lid	domain
AAA	PF00004.29	gi|390938571|ref|YP_006402309.1|	-	2.4e-06	28.0	0.1	3.7e-05	24.2	0.0	2.8	2	1	1	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|390938571|ref|YP_006402309.1|	-	1.2e-05	25.8	0.2	8.1e-05	23.1	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|390938571|ref|YP_006402309.1|	-	0.00017	21.0	0.0	0.0013	18.2	0.0	2.1	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_22	PF13401.6	gi|390938571|ref|YP_006402309.1|	-	0.00028	21.2	0.6	0.004	17.4	0.0	3.0	3	2	0	3	3	3	1	AAA	domain
RuvB_N	PF05496.12	gi|390938571|ref|YP_006402309.1|	-	0.00069	19.4	0.1	0.0038	17.0	0.1	2.1	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|390938571|ref|YP_006402309.1|	-	0.0019	18.4	0.0	0.1	12.7	0.0	2.7	2	1	1	3	3	3	1	AAA	domain	(Cdc48	subfamily)
MCM	PF00493.23	gi|390938571|ref|YP_006402309.1|	-	0.0025	16.9	0.0	0.0065	15.6	0.0	1.7	2	0	0	2	2	2	1	MCM	P-loop	domain
Sigma54_activat	PF00158.26	gi|390938571|ref|YP_006402309.1|	-	0.005	16.6	0.0	0.027	14.2	0.0	2.0	1	1	0	1	1	1	1	Sigma-54	interaction	domain
IstB_IS21	PF01695.17	gi|390938571|ref|YP_006402309.1|	-	0.014	15.2	0.0	0.027	14.2	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|390938571|ref|YP_006402309.1|	-	0.02	14.4	0.0	0.06	12.9	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
HTH_46	PF15977.5	gi|390938571|ref|YP_006402309.1|	-	0.16	12.0	0.9	1.2	9.2	0.0	2.9	5	0	0	5	5	4	0	Winged	helix-turn-helix	DNA	binding
DUF296	PF03479.15	gi|390938572|ref|YP_006402310.1|	-	3.1e-16	59.7	0.9	3.5e-16	59.5	0.9	1.0	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
Auxin_BP	PF02041.16	gi|390938572|ref|YP_006402310.1|	-	0.051	13.2	0.1	0.066	12.9	0.1	1.2	1	0	0	1	1	1	0	Auxin	binding	protein
DUF123	PF01986.16	gi|390938573|ref|YP_006402311.1|	-	4.7e-19	68.7	0.0	6.3e-19	68.3	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
tRNA_anti-codon	PF01336.25	gi|390938574|ref|YP_006402312.1|	-	1.9e-09	37.4	0.5	2.7e-09	36.9	0.5	1.2	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
REPA_OB_2	PF16900.5	gi|390938574|ref|YP_006402312.1|	-	0.00044	20.1	0.1	0.0006	19.7	0.1	1.2	1	0	0	1	1	1	1	Replication	protein	A	OB	domain
CDC24_OB3	PF17244.2	gi|390938574|ref|YP_006402312.1|	-	0.0053	16.5	0.0	0.006	16.3	0.0	1.1	1	0	0	1	1	1	1	Cell	division	control	protein	24,	OB	domain	3
PqqD	PF05402.12	gi|390938575|ref|YP_006402313.1|	-	1.4e-11	44.5	0.3	1.9e-11	44.1	0.3	1.2	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
HpcH_HpaI	PF03328.14	gi|390938575|ref|YP_006402313.1|	-	0.027	13.6	0.0	0.03	13.4	0.0	1.1	1	0	0	1	1	1	0	HpcH/HpaI	aldolase/citrate	lyase	family
Thiolase_N	PF00108.23	gi|390938576|ref|YP_006402314.1|	-	6.7e-19	68.3	0.0	3.8e-18	65.8	0.0	2.0	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|390938576|ref|YP_006402314.1|	-	2.1e-13	50.0	0.1	4.3e-13	49.0	0.1	1.6	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|390938576|ref|YP_006402314.1|	-	0.0002	21.0	3.4	0.0002	21.0	3.4	3.1	3	1	0	3	3	3	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|390938576|ref|YP_006402314.1|	-	0.00097	18.9	1.9	0.45	10.4	0.0	3.2	3	0	0	3	3	3	2	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Amidohydro_1	PF01979.20	gi|390938576|ref|YP_006402314.1|	-	0.0022	17.4	0.1	1.8	7.8	0.1	2.1	2	0	0	2	2	2	2	Amidohydrolase	family
Ketoacyl-synt_C	PF02801.22	gi|390938576|ref|YP_006402314.1|	-	0.0026	17.8	0.1	0.98	9.5	0.0	2.6	2	0	0	2	2	2	2	Beta-ketoacyl	synthase,	C-terminal	domain
DUF2279	PF10043.9	gi|390938576|ref|YP_006402314.1|	-	0.026	15.3	0.1	4.2	8.2	0.0	2.7	2	0	0	2	2	2	0	Predicted	periplasmic	lipoprotein	(DUF2279)
DUF2231	PF09990.9	gi|390938576|ref|YP_006402314.1|	-	0.21	12.0	1.3	5.2	7.6	0.0	2.7	3	0	0	3	3	3	0	Predicted	membrane	protein	(DUF2231)
Carboxyl_trans	PF01039.22	gi|390938577|ref|YP_006402315.1|	-	1e-183	611.5	0.0	1.2e-183	611.3	0.0	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.11	gi|390938577|ref|YP_006402315.1|	-	3.7e-05	23.3	0.1	8.1e-05	22.2	0.1	1.5	1	0	0	1	1	1	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
DUF417	PF04224.12	gi|390938577|ref|YP_006402315.1|	-	0.023	14.2	0.1	0.04	13.5	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF417
PMC2NT	PF08066.12	gi|390938577|ref|YP_006402315.1|	-	0.14	12.9	0.0	0.3	11.8	0.0	1.5	1	0	0	1	1	1	0	PMC2NT	(NUC016)	domain
DsrD	PF08679.11	gi|390938577|ref|YP_006402315.1|	-	0.17	12.2	0.6	1.3	9.3	0.0	2.5	2	1	0	2	2	2	0	Dissimilatory	sulfite	reductase	D	(DsrD)
Biotin_lipoyl	PF00364.22	gi|390938578|ref|YP_006402316.1|	-	3e-13	49.4	7.3	3e-13	49.4	7.3	1.8	1	1	0	1	1	1	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.6	gi|390938578|ref|YP_006402316.1|	-	1.4e-09	37.6	2.6	1.8e-05	24.5	0.4	2.5	1	1	1	2	2	2	2	Biotin-lipoyl	like
HlyD_D23	PF16576.5	gi|390938578|ref|YP_006402316.1|	-	2.2e-06	27.0	2.8	0.015	14.5	0.8	2.3	1	1	1	2	2	2	2	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
HlyD_3	PF13437.6	gi|390938578|ref|YP_006402316.1|	-	4.5e-05	24.1	4.2	0.18	12.6	0.0	2.8	3	1	0	3	3	3	2	HlyD	family	secretion	protein
GCV_H	PF01597.19	gi|390938578|ref|YP_006402316.1|	-	0.014	15.3	7.2	0.087	12.7	0.3	2.4	1	1	1	2	2	2	0	Glycine	cleavage	H-protein
DZF	PF07528.14	gi|390938578|ref|YP_006402316.1|	-	0.091	12.4	0.4	0.13	11.8	0.4	1.3	1	0	0	1	1	1	0	DZF	domain
Hjc	PF01870.18	gi|390938578|ref|YP_006402316.1|	-	0.17	11.9	2.3	0.22	11.5	0.4	2.1	1	1	1	2	2	2	0	Archaeal	holliday	junction	resolvase	(hjc)
Wyosine_form	PF08608.12	gi|390938579|ref|YP_006402317.1|	-	3.9e-19	68.7	0.0	7.1e-19	67.9	0.0	1.5	1	0	0	1	1	1	1	Wyosine	base	formation
Radical_SAM	PF04055.21	gi|390938579|ref|YP_006402317.1|	-	3.2e-17	63.4	0.1	1.2e-16	61.5	0.0	2.0	2	1	0	2	2	2	1	Radical	SAM	superfamily
Hydrolase	PF00702.26	gi|390938579|ref|YP_006402317.1|	-	0.031	14.6	0.0	0.77	10.0	0.0	2.2	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|390938579|ref|YP_006402317.1|	-	0.19	12.1	0.0	0.45	10.9	0.0	1.6	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
HTH_24	PF13412.6	gi|390938580|ref|YP_006402318.1|	-	1e-06	28.2	0.7	2.9e-06	26.7	0.2	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|390938580|ref|YP_006402318.1|	-	4.4e-06	26.5	0.2	8.6e-05	22.3	0.1	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.6	gi|390938580|ref|YP_006402318.1|	-	5.3e-05	23.1	0.1	0.00014	21.8	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_IclR	PF09339.10	gi|390938580|ref|YP_006402318.1|	-	0.00027	20.7	0.0	0.00073	19.3	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|390938580|ref|YP_006402318.1|	-	0.00034	20.4	0.0	0.00074	19.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|390938580|ref|YP_006402318.1|	-	0.0032	17.8	0.1	0.015	15.6	0.0	2.2	2	1	0	2	2	2	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|390938580|ref|YP_006402318.1|	-	0.0035	17.5	0.0	0.0093	16.2	0.0	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|390938580|ref|YP_006402318.1|	-	0.0052	16.7	0.2	0.018	14.9	0.0	2.0	2	0	0	2	2	1	1	MarR	family
AbiEi_4	PF13338.6	gi|390938580|ref|YP_006402318.1|	-	0.0068	16.5	0.7	0.058	13.6	0.1	2.5	2	0	0	2	2	2	1	Transcriptional	regulator,	AbiEi	antitoxin
DUF2250	PF10007.9	gi|390938580|ref|YP_006402318.1|	-	0.0093	16.1	1.3	0.023	14.8	0.0	2.3	2	1	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
BLOC1_2	PF10046.9	gi|390938580|ref|YP_006402318.1|	-	0.01	16.1	0.8	0.04	14.2	0.8	2.0	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
FtsK_gamma	PF09397.10	gi|390938580|ref|YP_006402318.1|	-	0.012	15.4	0.1	0.14	11.9	0.0	2.3	2	0	0	2	2	2	0	Ftsk	gamma	domain
HTH_5	PF01022.20	gi|390938580|ref|YP_006402318.1|	-	0.013	15.3	0.0	0.032	14.1	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|390938580|ref|YP_006402318.1|	-	0.03	14.3	0.1	0.11	12.5	0.1	2.0	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
RuvB_C	PF05491.13	gi|390938580|ref|YP_006402318.1|	-	0.069	13.0	0.4	0.27	11.2	0.2	2.1	2	0	0	2	2	2	0	RuvB	C-terminal	winged	helix	domain
HTH_27	PF13463.6	gi|390938580|ref|YP_006402318.1|	-	0.094	13.2	0.0	0.27	11.8	0.0	1.8	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DHR10	PF18595.1	gi|390938580|ref|YP_006402318.1|	-	0.11	12.6	2.1	0.21	11.6	0.7	1.8	1	1	0	1	1	1	0	Designed	helical	repeat	protein	10	domain
FaeA	PF04703.12	gi|390938580|ref|YP_006402318.1|	-	0.14	12.6	0.1	0.54	10.7	0.1	2.1	2	1	0	2	2	1	0	FaeA-like	protein
RPW8	PF05659.11	gi|390938580|ref|YP_006402318.1|	-	0.15	11.7	2.0	0.18	11.5	0.4	1.9	2	0	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
CCDC53	PF10152.9	gi|390938580|ref|YP_006402318.1|	-	3.7	7.9	7.0	0.51	10.7	0.5	2.1	1	1	1	2	2	2	0	Subunit	CCDC53	of	WASH	complex
Thioredoxin_3	PF13192.6	gi|390938581|ref|YP_006402319.1|	-	4.3e-10	39.5	0.0	4.9e-07	29.7	0.1	2.4	2	0	0	2	2	2	2	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|390938581|ref|YP_006402319.1|	-	4.8e-06	26.7	0.6	7.3e-05	22.9	0.2	2.4	2	0	0	2	2	2	1	Glutaredoxin
Thioredoxin_9	PF14595.6	gi|390938581|ref|YP_006402319.1|	-	0.0025	17.6	0.0	0.0042	16.8	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
ABC_transp_aux	PF09822.9	gi|390938581|ref|YP_006402319.1|	-	0.0094	15.5	0.0	3.9	6.9	0.0	2.2	2	0	0	2	2	2	2	ABC-type	uncharacterized	transport	system
Thioredoxin	PF00085.20	gi|390938581|ref|YP_006402319.1|	-	0.02	14.9	0.1	0.04	13.9	0.1	1.5	1	0	0	1	1	1	0	Thioredoxin
DUF2946	PF11162.8	gi|390938581|ref|YP_006402319.1|	-	0.024	15.3	1.0	0.32	11.7	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2946)
Thioredoxin_4	PF13462.6	gi|390938581|ref|YP_006402319.1|	-	0.07	13.3	0.2	8.1	6.6	0.1	2.3	2	0	0	2	2	2	0	Thioredoxin
Epimerase	PF01370.21	gi|390938581|ref|YP_006402319.1|	-	0.14	11.6	0.0	0.18	11.2	0.0	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Thioredoxin_2	PF13098.6	gi|390938581|ref|YP_006402319.1|	-	0.15	12.5	5.0	2.5	8.6	1.5	3.5	2	2	1	3	3	3	0	Thioredoxin-like	domain
Fe_dep_repr_C	PF02742.15	gi|390938582|ref|YP_006402320.1|	-	1.1e-18	67.1	2.4	1.6e-18	66.6	1.6	1.7	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|390938582|ref|YP_006402320.1|	-	4.6e-15	55.5	0.0	8.8e-15	54.7	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|390938582|ref|YP_006402320.1|	-	2.6e-06	27.3	0.0	5.5e-06	26.2	0.0	1.6	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|390938582|ref|YP_006402320.1|	-	8.9e-06	25.5	0.0	2.2e-05	24.3	0.0	1.6	1	0	0	1	1	1	1	MarR	family
DUF2250	PF10007.9	gi|390938582|ref|YP_006402320.1|	-	5.6e-05	23.2	0.1	8.8e-05	22.6	0.1	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_27	PF13463.6	gi|390938582|ref|YP_006402320.1|	-	6.4e-05	23.4	0.0	0.00021	21.7	0.0	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|390938582|ref|YP_006402320.1|	-	0.00014	21.6	0.0	0.00037	20.2	0.0	1.8	1	0	0	1	1	1	1	LexA	DNA	binding	domain
DUF4423	PF14394.6	gi|390938582|ref|YP_006402320.1|	-	0.00029	20.6	0.0	0.00049	19.9	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.19	gi|390938582|ref|YP_006402320.1|	-	0.00042	20.1	0.1	0.0012	18.7	0.1	1.8	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|390938582|ref|YP_006402320.1|	-	0.00053	19.8	0.0	0.0012	18.7	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|390938582|ref|YP_006402320.1|	-	0.00062	19.7	0.0	0.00088	19.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_IclR	PF09339.10	gi|390938582|ref|YP_006402320.1|	-	0.00063	19.5	0.0	0.0017	18.1	0.0	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|390938582|ref|YP_006402320.1|	-	0.0012	19.2	0.0	0.0034	17.7	0.0	1.9	2	1	0	2	2	2	1	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|390938582|ref|YP_006402320.1|	-	0.0028	17.6	0.0	0.006	16.5	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|390938582|ref|YP_006402320.1|	-	0.0046	16.6	0.0	0.0095	15.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_38	PF13936.6	gi|390938582|ref|YP_006402320.1|	-	0.0049	16.6	0.1	0.091	12.5	0.0	2.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|390938582|ref|YP_006402320.1|	-	0.0056	16.2	0.0	0.013	15.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
PqqD	PF05402.12	gi|390938582|ref|YP_006402320.1|	-	0.016	15.5	0.0	2.4	8.5	0.0	2.7	1	1	1	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
HTH_36	PF13730.6	gi|390938582|ref|YP_006402320.1|	-	0.021	14.8	0.0	0.1	12.6	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|390938582|ref|YP_006402320.1|	-	0.036	14.1	0.1	0.087	12.9	0.0	1.8	2	1	0	2	2	1	0	Winged	helix-turn	helix
Mrr_N	PF14338.6	gi|390938582|ref|YP_006402320.1|	-	0.061	13.5	0.1	0.2	11.8	0.1	1.8	2	0	0	2	2	2	0	Mrr	N-terminal	domain
SecA_PP_bind	PF01043.20	gi|390938582|ref|YP_006402320.1|	-	0.073	13.7	0.0	0.095	13.4	0.0	1.3	1	0	0	1	1	1	0	SecA	preprotein	cross-linking	domain
HTH_40	PF14493.6	gi|390938582|ref|YP_006402320.1|	-	0.075	13.5	0.1	0.22	12.0	0.1	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|390938582|ref|YP_006402320.1|	-	0.12	12.6	0.0	0.21	11.8	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
NikR_C	PF08753.11	gi|390938583|ref|YP_006402321.1|	-	3.2e-21	75.3	1.0	4.7e-21	74.7	1.0	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|390938583|ref|YP_006402321.1|	-	0.1	12.6	0.0	0.3	11.1	0.0	1.8	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
RHH_6	PF16762.5	gi|390938583|ref|YP_006402321.1|	-	0.11	13.1	0.0	0.18	12.4	0.0	1.3	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
DUF5388	PF17363.2	gi|390938584|ref|YP_006402322.1|	-	0.032	14.4	1.0	0.065	13.4	0.6	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5388)
DUF4252	PF14060.6	gi|390938584|ref|YP_006402322.1|	-	0.07	13.0	0.3	0.076	12.9	0.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4252)
Orn_Arg_deC_N	PF02784.16	gi|390938585|ref|YP_006402323.1|	-	5.3e-21	75.1	0.0	9.7e-21	74.3	0.0	1.4	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
DUF724	PF05266.14	gi|390938585|ref|YP_006402323.1|	-	1.7	8.4	4.9	23	4.7	0.0	3.5	4	1	0	4	4	4	0	Protein	of	unknown	function	(DUF724)
Radical_SAM	PF04055.21	gi|390938586|ref|YP_006402324.1|	-	5.8e-15	56.1	0.0	1.1e-14	55.2	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
PhdYeFM_antitox	PF02604.19	gi|390938586|ref|YP_006402324.1|	-	0.071	12.9	0.0	0.16	11.8	0.0	1.6	1	0	0	1	1	1	0	Antitoxin	Phd_YefM,	type	II	toxin-antitoxin	system
HypD	PF01924.16	gi|390938587|ref|YP_006402325.1|	-	4.1e-129	430.7	0.0	4.9e-129	430.4	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	formation	hypA	family
zf-RING_6	PF14835.6	gi|390938587|ref|YP_006402325.1|	-	0.046	13.6	0.0	0.13	12.1	0.1	1.7	2	0	0	2	2	2	0	zf-RING	of	BARD1-type	protein
MTHFR_C	PF12225.8	gi|390938587|ref|YP_006402325.1|	-	0.31	10.7	1.6	0.5	10.0	1.6	1.3	1	0	0	1	1	1	0	Methylene-tetrahydrofolate	reductase	C	terminal
NTP_transf_3	PF12804.7	gi|390938588|ref|YP_006402326.1|	-	8e-25	88.1	0.0	9.9e-25	87.7	0.0	1.0	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|390938588|ref|YP_006402326.1|	-	2.7e-07	30.5	0.0	3.6e-07	30.2	0.0	1.1	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.19	gi|390938588|ref|YP_006402326.1|	-	0.0012	18.8	0.0	0.0017	18.3	0.0	1.3	1	0	0	1	1	1	1	Cytidylyltransferase
NTP_transferase	PF00483.23	gi|390938588|ref|YP_006402326.1|	-	0.015	14.9	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	Nucleotidyl	transferase
Glyco_tranf_2_3	PF13641.6	gi|390938588|ref|YP_006402326.1|	-	0.1	12.5	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
PhoU_div	PF01865.16	gi|390938589|ref|YP_006402327.1|	-	5.5e-24	84.7	3.9	6.4e-24	84.5	3.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
PhoU	PF01895.19	gi|390938589|ref|YP_006402327.1|	-	0.00017	22.0	3.4	0.0034	17.8	0.3	2.4	2	1	0	2	2	2	2	PhoU	domain
Plasmid_parti	PF01672.16	gi|390938589|ref|YP_006402327.1|	-	0.0039	17.8	2.6	1.3	9.7	0.0	3.5	1	1	1	3	3	3	2	Putative	plasmid	partition	protein
Phage_holin_6_1	PF09682.10	gi|390938589|ref|YP_006402327.1|	-	0.033	14.6	0.2	0.068	13.6	0.1	1.6	2	0	0	2	2	2	0	Bacteriophage	holin	of	superfamily	6	(Holin_LLH)
TrmB	PF01978.19	gi|390938590|ref|YP_006402328.1|	-	4.9e-05	23.1	1.8	0.00021	21.1	1.3	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|390938590|ref|YP_006402328.1|	-	0.051	13.6	0.0	0.076	13.0	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
PaaX	PF07848.12	gi|390938590|ref|YP_006402328.1|	-	0.069	13.4	0.2	0.16	12.2	0.1	1.6	2	0	0	2	2	2	0	PaaX-like	protein
Penicillinase_R	PF03965.16	gi|390938590|ref|YP_006402328.1|	-	0.13	12.7	0.1	0.18	12.2	0.1	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
RHH_1	PF01402.21	gi|390938591|ref|YP_006402329.1|	-	0.0025	17.7	0.6	0.014	15.3	0.4	2.2	1	1	1	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
CopG_antitoxin	PF12441.8	gi|390938591|ref|YP_006402329.1|	-	0.06	13.9	0.5	0.15	12.6	0.1	1.8	2	0	0	2	2	2	0	CopG	antitoxin	of	type	II	toxin-antitoxin	system
DUF211	PF02680.14	gi|390938592|ref|YP_006402330.1|	-	2.8e-32	110.7	9.2	3.1e-32	110.6	9.2	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
DUF4135	PF13575.6	gi|390938593|ref|YP_006402331.1|	-	0.18	11.1	0.1	0.24	10.7	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4135)
DUF3667	PF12412.8	gi|390938593|ref|YP_006402331.1|	-	0.22	11.1	1.2	0.53	9.8	0.1	2.2	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3667)
Metallophos_2	PF12850.7	gi|390938594|ref|YP_006402332.1|	-	2.4e-19	70.1	0.0	3.2e-19	69.7	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|390938594|ref|YP_006402332.1|	-	1.7e-06	28.7	0.6	0.00042	20.9	0.0	2.2	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
ABC_tran	PF00005.27	gi|390938595|ref|YP_006402333.1|	-	4.8e-35	121.0	0.0	7.6e-35	120.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938595|ref|YP_006402333.1|	-	4.9e-09	36.4	0.3	0.00015	21.7	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_2	PF08402.10	gi|390938595|ref|YP_006402333.1|	-	1.3e-08	34.8	0.0	1.6e-06	28.2	0.0	3.2	3	0	0	3	3	3	1	TOBE	domain
AAA_23	PF13476.6	gi|390938595|ref|YP_006402333.1|	-	5.4e-05	23.8	0.3	0.00015	22.4	0.3	1.8	2	1	0	2	2	1	1	AAA	domain
AAA_22	PF13401.6	gi|390938595|ref|YP_006402333.1|	-	0.00027	21.2	1.5	0.0047	17.2	1.5	2.1	1	1	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|390938595|ref|YP_006402333.1|	-	0.00069	20.0	0.0	0.0013	19.1	0.0	1.4	1	0	0	1	1	1	1	RNA	helicase
SMC_N	PF02463.19	gi|390938595|ref|YP_006402333.1|	-	0.00083	18.9	0.6	0.009	15.5	0.6	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|390938595|ref|YP_006402333.1|	-	0.0024	17.7	0.1	0.082	12.6	0.0	2.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|390938595|ref|YP_006402333.1|	-	0.0031	17.9	0.3	0.058	13.8	0.3	2.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|390938595|ref|YP_006402333.1|	-	0.0036	17.3	0.0	0.0061	16.5	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
ATPase_2	PF01637.18	gi|390938595|ref|YP_006402333.1|	-	0.011	15.7	0.0	0.017	15.0	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|390938595|ref|YP_006402333.1|	-	0.047	14.1	0.1	0.08	13.3	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
Rop	PF01815.16	gi|390938595|ref|YP_006402333.1|	-	0.052	13.4	0.2	0.092	12.6	0.2	1.3	1	0	0	1	1	1	0	Rop	protein
AAA_28	PF13521.6	gi|390938595|ref|YP_006402333.1|	-	0.076	13.3	0.0	0.16	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|390938595|ref|YP_006402333.1|	-	0.089	12.8	0.0	0.19	11.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|390938595|ref|YP_006402333.1|	-	0.1	12.3	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
BPD_transp_1	PF00528.22	gi|390938596|ref|YP_006402334.1|	-	2.2e-18	66.7	54.6	7.2e-12	45.4	24.4	6.0	4	3	1	5	5	5	3	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.6	gi|390938597|ref|YP_006402335.1|	-	1.2e-12	48.3	0.0	1.2e-12	48.3	0.0	2.2	1	1	1	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|390938597|ref|YP_006402335.1|	-	2.1e-12	47.0	0.1	3.3e-12	46.3	0.1	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|390938597|ref|YP_006402335.1|	-	1.2e-06	28.8	0.2	1.2e-06	28.8	0.2	2.3	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
Shisa	PF13908.6	gi|390938597|ref|YP_006402335.1|	-	1.1	9.5	6.4	2	8.7	6.4	1.4	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
DAO_C	PF16901.5	gi|390938598|ref|YP_006402336.1|	-	0.11	12.3	0.0	0.12	12.2	0.0	1.1	1	0	0	1	1	1	0	C-terminal	domain	of	alpha-glycerophosphate	oxidase
Glucodextran_C	PF09985.9	gi|390938599|ref|YP_006402337.1|	-	3.1e-76	255.8	0.8	7.6e-76	254.5	0.8	1.7	1	0	0	1	1	1	1	C-terminal	binding-module,	SLH-like,	of	glucodextranase
ABC_transp_aux	PF09822.9	gi|390938599|ref|YP_006402337.1|	-	0.0014	18.2	0.0	0.0025	17.3	0.0	1.4	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
Adeno_E3_CR2	PF02439.15	gi|390938599|ref|YP_006402337.1|	-	1.7	8.5	4.8	4.1	7.2	4.8	1.6	1	0	0	1	1	1	0	Adenovirus	E3	region	protein	CR2
Mucin	PF01456.17	gi|390938599|ref|YP_006402337.1|	-	2.4	8.1	23.6	1	9.4	21.2	1.6	2	0	0	2	2	2	0	Mucin-like	glycoprotein
DUF5305	PF17231.2	gi|390938599|ref|YP_006402337.1|	-	3	7.2	8.8	5.3	6.4	8.8	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
Metallophos	PF00149.28	gi|390938600|ref|YP_006402338.1|	-	5.8e-14	53.1	0.5	1.1e-13	52.2	0.5	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
RIFIN	PF02009.16	gi|390938600|ref|YP_006402338.1|	-	0.0002	21.4	10.5	0.00031	20.7	10.5	1.2	1	0	0	1	1	1	1	Rifin
Stevor	PF17410.2	gi|390938600|ref|YP_006402338.1|	-	0.0019	17.8	7.8	0.0031	17.1	7.8	1.3	1	0	0	1	1	1	1	Subtelomeric	Variable	Open	Reading	frame
Metallophos_2	PF12850.7	gi|390938600|ref|YP_006402338.1|	-	0.012	15.8	0.0	0.083	13.1	0.0	2.0	1	1	0	1	1	1	0	Calcineurin-like	phosphoesterase	superfamily	domain
Amnionless	PF14828.6	gi|390938600|ref|YP_006402338.1|	-	0.76	8.5	3.1	1.1	8.0	3.1	1.2	1	0	0	1	1	1	0	Amnionless
DUF5383	PF17355.2	gi|390938600|ref|YP_006402338.1|	-	1.1	9.6	5.0	0.93	9.9	3.4	1.6	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5383)
DUF5305	PF17231.2	gi|390938600|ref|YP_006402338.1|	-	4.7	6.6	27.9	11	5.4	27.9	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
Hjc	PF01870.18	gi|390938601|ref|YP_006402339.1|	-	2.1e-28	98.2	0.1	2.7e-28	97.8	0.1	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
RecU	PF03838.14	gi|390938601|ref|YP_006402339.1|	-	1.6e-05	24.9	0.0	2e-05	24.6	0.0	1.1	1	0	0	1	1	1	1	Recombination	protein	U
DUF104	PF01954.16	gi|390938601|ref|YP_006402339.1|	-	0.017	15.6	0.6	0.046	14.2	0.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF104
T2SSE	PF00437.20	gi|390938602|ref|YP_006402340.1|	-	1.2e-10	40.9	0.0	2.2e-10	40.1	0.0	1.4	1	1	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_18	PF13238.6	gi|390938602|ref|YP_006402340.1|	-	0.00075	20.1	0.0	0.0028	18.2	0.0	2.0	2	0	0	2	2	1	1	AAA	domain
DnaB_C	PF03796.15	gi|390938602|ref|YP_006402340.1|	-	0.0036	16.7	0.0	0.0095	15.3	0.0	1.7	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_14	PF13173.6	gi|390938602|ref|YP_006402340.1|	-	0.0036	17.3	0.0	0.017	15.1	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
RuvB_N	PF05496.12	gi|390938602|ref|YP_006402340.1|	-	0.0037	17.0	0.0	0.01	15.6	0.0	1.7	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA	PF00004.29	gi|390938602|ref|YP_006402340.1|	-	0.0038	17.6	0.1	0.015	15.7	0.0	2.1	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|390938602|ref|YP_006402340.1|	-	0.0044	17.4	0.0	0.0094	16.3	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|390938602|ref|YP_006402340.1|	-	0.0046	16.7	0.0	0.0091	15.8	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|390938602|ref|YP_006402340.1|	-	0.0061	16.8	0.0	0.015	15.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|390938602|ref|YP_006402340.1|	-	0.012	15.2	0.1	0.025	14.2	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|390938602|ref|YP_006402340.1|	-	0.012	15.6	0.0	0.029	14.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.12	gi|390938602|ref|YP_006402340.1|	-	0.013	14.8	0.1	0.14	11.4	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
NTPase_1	PF03266.15	gi|390938602|ref|YP_006402340.1|	-	0.013	15.4	2.6	0.18	11.7	0.0	3.3	3	1	0	3	3	3	0	NTPase
SRP54	PF00448.22	gi|390938602|ref|YP_006402340.1|	-	0.015	14.9	0.1	0.033	13.8	0.1	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
NACHT	PF05729.12	gi|390938602|ref|YP_006402340.1|	-	0.021	14.7	0.0	0.039	13.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
TsaE	PF02367.17	gi|390938602|ref|YP_006402340.1|	-	0.022	14.8	0.0	0.057	13.4	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_3	PF07726.11	gi|390938602|ref|YP_006402340.1|	-	0.032	14.1	0.0	0.059	13.2	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|390938602|ref|YP_006402340.1|	-	0.039	14.1	0.0	0.12	12.6	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|390938602|ref|YP_006402340.1|	-	0.063	13.0	0.2	0.18	11.5	0.0	1.9	2	0	0	2	2	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|390938602|ref|YP_006402340.1|	-	0.067	12.9	0.0	0.17	11.5	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
ATP_bind_1	PF03029.17	gi|390938602|ref|YP_006402340.1|	-	0.086	12.6	0.0	0.17	11.6	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
RNA_helicase	PF00910.22	gi|390938602|ref|YP_006402340.1|	-	0.087	13.2	0.0	0.18	12.2	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_22	PF13401.6	gi|390938602|ref|YP_006402340.1|	-	0.087	13.1	0.0	0.32	11.3	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|390938602|ref|YP_006402340.1|	-	0.096	12.1	0.0	0.26	10.7	0.0	1.7	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_19	PF13245.6	gi|390938602|ref|YP_006402340.1|	-	0.11	12.9	0.0	0.25	11.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ResIII	PF04851.15	gi|390938602|ref|YP_006402340.1|	-	0.11	12.5	0.0	0.2	11.6	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Sigma54_activ_2	PF14532.6	gi|390938602|ref|YP_006402340.1|	-	0.17	12.0	0.0	0.44	10.6	0.0	1.7	1	0	0	1	1	1	0	Sigma-54	interaction	domain
TrwB_AAD_bind	PF10412.9	gi|390938602|ref|YP_006402340.1|	-	0.17	10.8	0.0	0.79	8.6	0.0	1.9	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Viral_helicase1	PF01443.18	gi|390938602|ref|YP_006402340.1|	-	0.2	11.4	0.0	0.31	10.7	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
Metallophos	PF00149.28	gi|390938603|ref|YP_006402341.1|	-	0.0054	17.2	4.6	0.013	16.0	4.6	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|390938603|ref|YP_006402341.1|	-	0.0067	16.6	0.0	0.013	15.7	0.0	1.5	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
RTP1_C1	PF10363.9	gi|390938603|ref|YP_006402341.1|	-	0.17	12.1	0.0	0.33	11.2	0.0	1.4	1	0	0	1	1	1	0	Required	for	nuclear	transport	of	RNA	pol	II	C-terminus	1
ParA	PF10609.9	gi|390938604|ref|YP_006402342.1|	-	5.6e-05	22.7	0.3	0.0001	21.8	0.3	1.4	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
cobW	PF02492.19	gi|390938604|ref|YP_006402342.1|	-	0.00033	20.3	0.0	0.0037	16.9	0.0	2.1	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
CbiA	PF01656.23	gi|390938604|ref|YP_006402342.1|	-	0.0097	16.0	1.6	0.024	14.7	0.8	2.0	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|390938604|ref|YP_006402342.1|	-	0.011	15.6	0.0	0.072	12.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
MobB	PF03205.14	gi|390938604|ref|YP_006402342.1|	-	0.056	13.3	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MeaB	PF03308.16	gi|390938604|ref|YP_006402342.1|	-	0.056	12.4	1.6	0.093	11.7	0.3	1.8	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
PPDK_N	PF01326.19	gi|390938605|ref|YP_006402343.1|	-	2.3e-122	408.4	0.0	3.6e-122	407.7	0.0	1.3	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.18	gi|390938605|ref|YP_006402343.1|	-	1.6e-90	303.2	0.0	3e-90	302.3	0.0	1.4	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.23	gi|390938605|ref|YP_006402343.1|	-	2.9e-30	103.8	0.8	6.4e-30	102.7	0.8	1.6	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
Epimerase_2	PF02350.19	gi|390938605|ref|YP_006402343.1|	-	0.026	13.4	0.0	0.055	12.3	0.0	1.4	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
Radical_SAM	PF04055.21	gi|390938605|ref|YP_006402343.1|	-	0.03	14.7	0.1	0.18	12.1	0.0	2.4	3	1	0	3	3	3	0	Radical	SAM	superfamily
CPSase_L_D2	PF02786.17	gi|390938606|ref|YP_006402344.1|	-	1.6e-36	125.8	0.0	2.2e-36	125.3	0.0	1.2	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_N	PF00289.22	gi|390938606|ref|YP_006402344.1|	-	5.8e-25	88.0	0.0	1.3e-24	86.9	0.0	1.6	1	0	0	1	1	1	1	Biotin	carboxylase,	N-terminal	domain
Biotin_carb_C	PF02785.19	gi|390938606|ref|YP_006402344.1|	-	1.4e-19	70.1	0.0	3.4e-19	68.9	0.0	1.6	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Dala_Dala_lig_C	PF07478.13	gi|390938606|ref|YP_006402344.1|	-	3.4e-09	36.5	0.0	1e-08	35.0	0.0	1.8	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp	PF02222.22	gi|390938606|ref|YP_006402344.1|	-	2.6e-08	33.6	0.0	5e-08	32.7	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
RimK	PF08443.11	gi|390938606|ref|YP_006402344.1|	-	8e-05	22.3	0.0	0.00013	21.7	0.0	1.3	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|390938606|ref|YP_006402344.1|	-	0.00037	19.9	0.0	0.00072	18.9	0.0	1.4	1	0	0	1	1	1	1	Sugar-transfer	associated	ATP-grasp
GARS_A	PF01071.19	gi|390938606|ref|YP_006402344.1|	-	0.0087	15.8	0.0	0.019	14.7	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_4	PF13535.6	gi|390938606|ref|YP_006402344.1|	-	0.037	13.6	0.0	0.087	12.4	0.0	1.7	1	0	0	1	1	1	0	ATP-grasp	domain
DivIVA	PF05103.13	gi|390938606|ref|YP_006402344.1|	-	0.072	13.2	0.0	0.8	9.8	0.0	2.3	2	0	0	2	2	2	0	DivIVA	protein
ATP-grasp_5	PF13549.6	gi|390938606|ref|YP_006402344.1|	-	0.073	12.5	0.0	0.13	11.7	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
DUF4017	PF13209.6	gi|390938607|ref|YP_006402345.1|	-	0.074	13.0	2.1	5.7	7.0	0.1	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4017)
tRNA-synt_2	PF00152.20	gi|390938608|ref|YP_006402346.1|	-	1.2e-85	287.4	0.1	1.8e-85	286.8	0.1	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA-synt_2d	PF01409.20	gi|390938608|ref|YP_006402346.1|	-	0.028	13.9	0.2	0.11	12.0	0.1	1.9	2	0	0	2	2	2	0	tRNA	synthetases	class	II	core	domain	(F)
PaRep2b	PF07775.11	gi|390938608|ref|YP_006402346.1|	-	0.11	11.0	0.1	0.3	9.5	0.1	1.6	2	0	0	2	2	2	0	PaRep2b	protein
PadR	PF03551.14	gi|390938609|ref|YP_006402347.1|	-	4.5e-05	23.3	0.0	6.4e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Penicillinase_R	PF03965.16	gi|390938609|ref|YP_006402347.1|	-	0.0011	19.2	0.0	0.0016	18.8	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
PaaX	PF07848.12	gi|390938609|ref|YP_006402347.1|	-	0.0015	18.7	0.0	0.0024	18.1	0.0	1.4	1	0	0	1	1	1	1	PaaX-like	protein
HTH_12	PF08461.10	gi|390938609|ref|YP_006402347.1|	-	0.012	15.5	0.1	0.022	14.7	0.1	1.4	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
DUF4364	PF14277.6	gi|390938609|ref|YP_006402347.1|	-	0.053	13.3	0.0	0.076	12.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
S10_plectin	PF03501.15	gi|390938609|ref|YP_006402347.1|	-	0.066	13.3	0.0	0.083	13.0	0.0	1.2	1	0	0	1	1	1	0	Plectin/S10	domain
Inos-1-P_synth	PF01658.17	gi|390938610|ref|YP_006402348.1|	-	1.3e-18	67.2	0.0	2.5e-18	66.3	0.0	1.5	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
NAD_binding_5	PF07994.12	gi|390938610|ref|YP_006402348.1|	-	0.00093	18.7	0.0	0.0013	18.2	0.0	1.2	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
ADK	PF00406.22	gi|390938611|ref|YP_006402349.1|	-	1.5e-49	168.0	0.0	1.8e-49	167.7	0.0	1.1	1	0	0	1	1	1	1	Adenylate	kinase
AAA_17	PF13207.6	gi|390938611|ref|YP_006402349.1|	-	1.2e-23	84.0	0.0	2e-23	83.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ADK_lid	PF05191.14	gi|390938611|ref|YP_006402349.1|	-	1.5e-11	44.1	3.9	2.4e-11	43.4	3.9	1.3	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
AAA_18	PF13238.6	gi|390938611|ref|YP_006402349.1|	-	1.4e-08	35.3	0.0	2.6e-08	34.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Hydin_ADK	PF17213.3	gi|390938611|ref|YP_006402349.1|	-	4.7e-05	23.8	0.2	0.054	13.8	0.1	2.7	3	0	0	3	3	3	2	Hydin	Adenylate	kinase-like	domain
AAA_33	PF13671.6	gi|390938611|ref|YP_006402349.1|	-	0.0017	18.5	0.0	0.0037	17.4	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.17	gi|390938611|ref|YP_006402349.1|	-	0.0063	16.2	0.1	0.21	11.3	0.0	2.7	3	0	0	3	3	3	1	Thymidylate	kinase
AAA_28	PF13521.6	gi|390938611|ref|YP_006402349.1|	-	0.01	16.1	0.1	0.022	15.0	0.0	1.7	1	1	1	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|390938611|ref|YP_006402349.1|	-	0.042	13.8	0.0	0.075	13.0	0.0	1.4	1	1	0	1	1	1	0	NACHT	domain
HTH_24	PF13412.6	gi|390938613|ref|YP_006402351.1|	-	7.8e-05	22.2	0.1	0.00018	21.0	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|390938613|ref|YP_006402351.1|	-	0.00018	21.3	0.1	0.00033	20.4	0.1	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|390938613|ref|YP_006402351.1|	-	0.011	15.6	0.1	0.021	14.8	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
MarR	PF01047.22	gi|390938613|ref|YP_006402351.1|	-	0.11	12.5	0.1	0.17	11.8	0.1	1.4	1	0	0	1	1	1	0	MarR	family
FeoC	PF09012.10	gi|390938613|ref|YP_006402351.1|	-	0.18	11.9	0.2	0.94	9.6	0.0	2.1	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
Aldo_ket_red	PF00248.21	gi|390938614|ref|YP_006402352.1|	-	7.9e-55	186.1	0.1	1.5e-52	178.7	0.1	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
CxxCxxCC	PF03692.15	gi|390938615|ref|YP_006402353.1|	-	1.2e-10	41.9	0.1	1.7e-10	41.4	0.1	1.2	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
HTH_24	PF13412.6	gi|390938618|ref|YP_006402356.1|	-	2.8e-12	46.0	0.1	5.9e-12	45.0	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|390938618|ref|YP_006402356.1|	-	9.6e-11	41.6	0.0	1.7e-10	40.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|390938618|ref|YP_006402356.1|	-	4.5e-10	39.3	0.1	1e-09	38.1	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|390938618|ref|YP_006402356.1|	-	1.9e-08	34.0	0.0	4.5e-08	32.8	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|390938618|ref|YP_006402356.1|	-	2.7e-06	27.2	0.0	5.9e-06	26.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|390938618|ref|YP_006402356.1|	-	6.6e-06	26.5	0.1	1.5e-05	25.4	0.1	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|390938618|ref|YP_006402356.1|	-	0.0001	22.1	0.0	0.00032	20.5	0.0	1.8	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|390938618|ref|YP_006402356.1|	-	0.00019	21.4	0.4	0.0004	20.3	0.1	1.7	2	0	0	2	2	1	1	Crp-like	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|390938618|ref|YP_006402356.1|	-	0.00026	20.8	0.2	0.00053	19.8	0.2	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
RNA_pol_Rpc34	PF05158.12	gi|390938618|ref|YP_006402356.1|	-	0.00079	18.9	0.0	0.0011	18.4	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpc34	subunit
HTH_5	PF01022.20	gi|390938618|ref|YP_006402356.1|	-	0.00079	19.2	0.0	0.0014	18.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4	PF04545.16	gi|390938618|ref|YP_006402356.1|	-	0.0015	18.0	0.3	0.0051	16.3	0.1	1.9	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_34	PF13601.6	gi|390938618|ref|YP_006402356.1|	-	0.0041	17.3	0.1	0.0078	16.4	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_23	PF13384.6	gi|390938618|ref|YP_006402356.1|	-	0.0052	16.5	0.1	0.013	15.3	0.1	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
Fe_dep_repress	PF01325.19	gi|390938618|ref|YP_006402356.1|	-	0.0053	16.9	0.0	0.029	14.6	0.0	2.1	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|390938618|ref|YP_006402356.1|	-	0.0058	16.6	0.1	0.016	15.1	0.1	1.8	1	0	0	1	1	1	1	HTH	domain
HTH_28	PF13518.6	gi|390938618|ref|YP_006402356.1|	-	0.0067	16.5	0.1	0.016	15.3	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|390938618|ref|YP_006402356.1|	-	0.01	15.7	0.0	0.023	14.6	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Rrf2	PF02082.20	gi|390938618|ref|YP_006402356.1|	-	0.019	15.3	0.0	0.046	14.1	0.0	1.6	1	1	0	1	1	1	0	Transcriptional	regulator
DUF4423	PF14394.6	gi|390938618|ref|YP_006402356.1|	-	0.023	14.4	0.0	0.038	13.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
B-block_TFIIIC	PF04182.12	gi|390938618|ref|YP_006402356.1|	-	0.027	14.6	0.0	0.06	13.5	0.0	1.5	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_29	PF13551.6	gi|390938618|ref|YP_006402356.1|	-	0.055	13.5	0.1	0.089	12.8	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
PaaX	PF07848.12	gi|390938618|ref|YP_006402356.1|	-	0.064	13.5	1.3	0.08	13.2	0.1	1.8	2	0	0	2	2	1	0	PaaX-like	protein
HTH_36	PF13730.6	gi|390938618|ref|YP_006402356.1|	-	0.075	13.0	0.0	0.2	11.7	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
RPA_C	PF08784.11	gi|390938618|ref|YP_006402356.1|	-	0.12	13.1	0.0	0.23	12.1	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DUF4364	PF14277.6	gi|390938618|ref|YP_006402356.1|	-	0.12	12.1	0.0	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
PurA	PF04845.13	gi|390938619|ref|YP_006402357.1|	-	0.11	11.8	0.0	0.15	11.4	0.0	1.1	1	0	0	1	1	1	0	PurA	ssDNA	and	RNA-binding	protein
DNA_primase_lrg	PF04104.14	gi|390938620|ref|YP_006402358.1|	-	9e-32	110.5	0.0	1.7e-31	109.6	0.0	1.4	2	0	0	2	2	2	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
Acetyltransf_CG	PF14542.6	gi|390938622|ref|YP_006402360.1|	-	4.8e-21	74.7	0.0	7.8e-21	74.0	0.0	1.4	1	1	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_1	PF00583.25	gi|390938622|ref|YP_006402360.1|	-	4.2e-06	27.0	0.1	7.4e-06	26.2	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|390938622|ref|YP_006402360.1|	-	0.00035	21.0	0.0	0.00039	20.8	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_15	PF17013.5	gi|390938622|ref|YP_006402360.1|	-	0.00085	18.8	0.1	0.00085	18.8	0.1	1.2	1	0	0	1	1	1	1	Putative	acetyl-transferase
Acetyltransf_9	PF13527.7	gi|390938622|ref|YP_006402360.1|	-	0.0013	18.8	0.0	0.0044	17.1	0.0	1.8	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|390938622|ref|YP_006402360.1|	-	0.0099	15.8	0.0	0.013	15.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|390938622|ref|YP_006402360.1|	-	0.14	12.1	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
ThiS	PF02597.20	gi|390938623|ref|YP_006402361.1|	-	1e-10	42.1	0.0	1.2e-10	41.9	0.0	1.1	1	0	0	1	1	1	1	ThiS	family
Ribosomal_L44	PF00935.19	gi|390938624|ref|YP_006402362.1|	-	7.9e-28	96.8	13.1	1.1e-27	96.2	13.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L44
zinc_ribbon_4	PF13717.6	gi|390938624|ref|YP_006402362.1|	-	0.0069	16.3	4.5	0.04	13.9	0.3	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|390938624|ref|YP_006402362.1|	-	0.023	14.4	5.1	0.92	9.3	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
PHD_4	PF16866.5	gi|390938624|ref|YP_006402362.1|	-	0.03	14.4	0.1	0.2	11.8	0.0	1.9	2	0	0	2	2	2	0	PHD-finger
CpXC	PF14353.6	gi|390938624|ref|YP_006402362.1|	-	0.056	13.5	3.0	1.1	9.4	0.2	2.1	1	1	1	2	2	2	0	CpXC	protein
RNA_POL_M_15KD	PF02150.16	gi|390938624|ref|YP_006402362.1|	-	0.091	12.7	0.8	1.5	8.8	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-TFIIB	PF13453.6	gi|390938624|ref|YP_006402362.1|	-	0.091	12.1	0.3	3.2	7.2	0.1	2.3	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Ribosomal_L33	PF00471.20	gi|390938624|ref|YP_006402362.1|	-	0.096	13.2	0.7	0.096	13.2	0.7	3.3	2	1	1	3	3	2	0	Ribosomal	protein	L33
DUF866	PF05907.13	gi|390938624|ref|YP_006402362.1|	-	0.1	12.5	1.1	1.9	8.4	0.0	2.0	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF866)
Cys_rich_KTR	PF14205.6	gi|390938624|ref|YP_006402362.1|	-	0.11	12.3	2.8	0.78	9.6	0.1	2.3	2	0	0	2	2	2	0	Cysteine-rich	KTR
DUF35_N	PF12172.8	gi|390938624|ref|YP_006402362.1|	-	0.13	12.1	0.8	3.7	7.5	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-Mss51	PF13824.6	gi|390938624|ref|YP_006402362.1|	-	0.2	11.8	4.2	2.7	8.1	4.6	2.0	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ribbon_3	PF13248.6	gi|390938624|ref|YP_006402362.1|	-	0.29	10.6	2.9	8.3	6.0	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|390938624|ref|YP_006402362.1|	-	0.33	10.9	4.6	5.1	7.1	4.6	2.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|390938624|ref|YP_006402362.1|	-	0.34	11.0	3.6	0.91	9.6	3.6	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_S8e	PF01201.22	gi|390938624|ref|YP_006402362.1|	-	0.66	10.2	5.2	0.84	9.8	5.2	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S8e
CxC5	PF18718.1	gi|390938624|ref|YP_006402362.1|	-	0.83	9.7	7.1	1.2	9.2	1.8	2.1	1	1	1	2	2	2	0	CxC5	like	cysteine	cluster	associated	with	KDZ	transposases
zinc_ribbon_5	PF13719.6	gi|390938624|ref|YP_006402362.1|	-	1.4	8.7	6.5	8.4	6.2	0.7	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ISL3	PF14690.6	gi|390938624|ref|YP_006402362.1|	-	5	7.9	9.1	1.3	9.8	0.8	2.8	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Ribosomal_S27e	PF01667.17	gi|390938625|ref|YP_006402363.1|	-	3.9e-17	61.7	1.1	4.6e-17	61.5	1.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S27
TF_Zn_Ribbon	PF08271.12	gi|390938625|ref|YP_006402363.1|	-	0.003	17.1	0.6	0.0041	16.6	0.6	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|390938625|ref|YP_006402363.1|	-	0.0072	16.3	0.4	0.01	15.9	0.4	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|390938625|ref|YP_006402363.1|	-	0.0087	16.1	0.2	0.011	15.8	0.2	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|390938625|ref|YP_006402363.1|	-	0.012	15.7	0.6	0.018	15.1	0.6	1.3	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-C2H2_3	PF13878.6	gi|390938625|ref|YP_006402363.1|	-	0.047	13.5	0.1	4.3	7.2	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Aminotran_1_2	PF00155.21	gi|390938625|ref|YP_006402363.1|	-	0.065	12.4	0.0	0.067	12.4	0.0	1.1	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
A2L_zn_ribbon	PF08792.10	gi|390938625|ref|YP_006402363.1|	-	0.074	12.8	0.7	9.7	6.0	0.0	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|390938625|ref|YP_006402363.1|	-	0.13	12.1	3.1	2.1	8.2	3.4	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_10	PF10058.9	gi|390938625|ref|YP_006402363.1|	-	0.15	11.8	1.3	0.27	11.0	1.3	1.5	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
ADK_lid	PF05191.14	gi|390938625|ref|YP_006402363.1|	-	0.17	11.9	2.2	0.76	9.8	2.2	1.8	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
DNA_RNApol_7kD	PF03604.13	gi|390938625|ref|YP_006402363.1|	-	0.38	10.5	6.1	6.1	6.6	5.8	2.3	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-BED	PF02892.15	gi|390938625|ref|YP_006402363.1|	-	0.74	9.9	3.6	13	5.9	0.5	2.2	1	1	1	2	2	2	0	BED	zinc	finger
LMBR1	PF04791.16	gi|390938626|ref|YP_006402364.1|	-	3.5e-05	22.9	0.0	3.9e-05	22.8	0.0	1.0	1	0	0	1	1	1	1	LMBR1-like	membrane	protein
Phage_holin_3_6	PF07332.11	gi|390938626|ref|YP_006402364.1|	-	0.00058	19.9	0.2	0.00073	19.6	0.2	1.2	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF4131	PF13567.6	gi|390938626|ref|YP_006402364.1|	-	0.054	13.1	0.0	0.061	13.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF2254	PF10011.9	gi|390938626|ref|YP_006402364.1|	-	0.12	11.2	0.0	0.13	11.0	0.0	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2254)
DPM2	PF07297.12	gi|390938626|ref|YP_006402364.1|	-	4.5	7.6	8.6	1.8	8.9	3.5	2.0	1	1	1	2	2	2	0	Dolichol	phosphate-mannose	biosynthesis	regulatory	protein	(DPM2)
HTH_45	PF14947.6	gi|390938628|ref|YP_006402366.1|	-	8.6e-16	57.7	1.8	1.9e-15	56.6	1.8	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix
RWD	PF05773.22	gi|390938629|ref|YP_006402367.1|	-	0.013	15.8	0.1	0.15	12.4	0.1	2.1	1	1	0	1	1	1	0	RWD	domain
CARDB	PF07705.11	gi|390938629|ref|YP_006402367.1|	-	0.034	14.4	1.1	0.058	13.7	1.1	1.4	1	0	0	1	1	1	0	CARDB
HCV_NS4a	PF01006.20	gi|390938629|ref|YP_006402367.1|	-	0.86	9.4	4.0	3.4	7.5	3.8	2.1	2	0	0	2	2	2	0	Hepatitis	C	virus	non-structural	protein	NS4a
VCBS	PF13517.6	gi|390938630|ref|YP_006402368.1|	-	0.0068	17.0	2.8	0.58	10.8	0.7	2.5	2	0	0	2	2	2	2	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
Peptidase_S24	PF00717.23	gi|390938631|ref|YP_006402369.1|	-	9.4e-07	28.7	0.3	1.6e-06	28.0	0.3	1.4	1	0	0	1	1	1	1	Peptidase	S24-like
Hydrolase_4	PF12146.8	gi|390938633|ref|YP_006402371.1|	-	8.6e-72	241.2	0.0	1e-71	241.0	0.0	1.0	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|390938633|ref|YP_006402371.1|	-	9.9e-20	71.3	0.1	1.9e-15	57.2	0.2	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|390938633|ref|YP_006402371.1|	-	2.4e-15	57.7	0.0	3.2e-15	57.3	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.21	gi|390938633|ref|YP_006402371.1|	-	7.7e-09	35.3	0.0	1.6e-06	27.7	0.0	2.2	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Abhydrolase_2	PF02230.16	gi|390938633|ref|YP_006402371.1|	-	1.4e-06	28.3	0.0	0.014	15.2	0.0	2.4	2	1	0	2	2	2	2	Phospholipase/Carboxylesterase
DLH	PF01738.18	gi|390938633|ref|YP_006402371.1|	-	4.4e-05	23.2	0.0	0.015	14.8	0.0	2.2	2	0	0	2	2	2	2	Dienelactone	hydrolase	family
FSH1	PF03959.13	gi|390938633|ref|YP_006402371.1|	-	0.00015	21.5	0.0	0.00025	20.8	0.0	1.6	1	1	0	1	1	1	1	Serine	hydrolase	(FSH1)
LCAT	PF02450.15	gi|390938633|ref|YP_006402371.1|	-	0.0014	17.8	0.0	0.0022	17.2	0.0	1.2	1	0	0	1	1	1	1	Lecithin:cholesterol	acyltransferase
DUF900	PF05990.12	gi|390938633|ref|YP_006402371.1|	-	0.0018	17.9	0.0	0.012	15.1	0.0	1.9	2	0	0	2	2	2	1	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
DUF1749	PF08538.10	gi|390938633|ref|YP_006402371.1|	-	0.002	17.3	0.1	0.0098	15.0	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1749)
Esterase	PF00756.20	gi|390938633|ref|YP_006402371.1|	-	0.0024	17.6	0.0	0.0034	17.1	0.0	1.2	1	0	0	1	1	1	1	Putative	esterase
LIDHydrolase	PF10230.9	gi|390938633|ref|YP_006402371.1|	-	0.0031	17.1	0.0	0.0058	16.2	0.0	1.4	2	0	0	2	2	2	1	Lipid-droplet	associated	hydrolase
Abhydrolase_5	PF12695.7	gi|390938633|ref|YP_006402371.1|	-	0.0071	16.1	0.0	0.23	11.2	0.0	2.2	2	0	0	2	2	2	1	Alpha/beta	hydrolase	family
PGAP1	PF07819.13	gi|390938633|ref|YP_006402371.1|	-	0.0078	16.0	0.0	0.013	15.2	0.0	1.3	1	0	0	1	1	1	1	PGAP1-like	protein
BAAT_C	PF08840.11	gi|390938633|ref|YP_006402371.1|	-	0.0082	16.1	0.0	0.025	14.5	0.0	1.7	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Peptidase_S15	PF02129.18	gi|390938633|ref|YP_006402371.1|	-	0.025	14.2	0.1	0.98	9.0	0.0	2.4	3	0	0	3	3	3	0	X-Pro	dipeptidyl-peptidase	(S15	family)
PhoPQ_related	PF10142.9	gi|390938633|ref|YP_006402371.1|	-	0.031	13.0	0.0	0.038	12.7	0.0	1.1	1	0	0	1	1	1	0	PhoPQ-activated	pathogenicity-related	protein
Ser_hydrolase	PF06821.13	gi|390938633|ref|YP_006402371.1|	-	0.071	13.0	0.0	0.21	11.5	0.0	1.7	2	0	0	2	2	2	0	Serine	hydrolase
DUF915	PF06028.11	gi|390938633|ref|YP_006402371.1|	-	0.098	12.0	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
Caps_synth_CapC	PF14102.6	gi|390938633|ref|YP_006402371.1|	-	0.12	12.8	0.2	0.18	12.2	0.2	1.2	1	0	0	1	1	1	0	Capsule	biosynthesis	CapC
FGGY_N	PF00370.21	gi|390938634|ref|YP_006402372.1|	-	2.7e-68	230.2	0.0	3.5e-68	229.8	0.0	1.1	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|390938634|ref|YP_006402372.1|	-	2e-58	197.4	0.1	2.8e-58	196.9	0.1	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
DAO	PF01266.24	gi|390938635|ref|YP_006402373.1|	-	4.7e-68	230.4	0.6	5.9e-68	230.0	0.6	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Fer2_BFD	PF04324.15	gi|390938635|ref|YP_006402373.1|	-	2e-11	44.0	1.3	4.4e-11	42.9	1.3	1.6	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
Pyr_redox_2	PF07992.14	gi|390938635|ref|YP_006402373.1|	-	5e-08	32.5	0.1	0.0068	15.7	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|390938635|ref|YP_006402373.1|	-	2.9e-06	27.4	0.0	5.9e-06	26.4	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|390938635|ref|YP_006402373.1|	-	2.7e-05	24.7	0.9	0.034	14.7	0.3	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|390938635|ref|YP_006402373.1|	-	0.0011	18.3	0.5	0.0011	18.3	0.5	2.0	2	0	0	2	2	2	1	Thi4	family
FAD_binding_2	PF00890.24	gi|390938635|ref|YP_006402373.1|	-	0.0013	17.9	0.1	0.0032	16.6	0.1	1.6	1	1	0	1	1	1	1	FAD	binding	domain
TrkA_N	PF02254.18	gi|390938635|ref|YP_006402373.1|	-	0.0013	19.0	0.1	0.0037	17.5	0.1	1.8	1	0	0	1	1	1	1	TrkA-N	domain
Lycopene_cycl	PF05834.12	gi|390938635|ref|YP_006402373.1|	-	0.0014	17.8	4.1	0.015	14.4	0.2	2.8	3	0	0	3	3	3	1	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.6	gi|390938635|ref|YP_006402373.1|	-	0.0015	17.8	2.3	0.24	10.6	0.5	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|390938635|ref|YP_006402373.1|	-	0.0046	16.2	0.4	0.0076	15.5	0.4	1.3	1	0	0	1	1	1	1	FAD	binding	domain
K_oxygenase	PF13434.6	gi|390938635|ref|YP_006402373.1|	-	0.031	13.4	0.0	0.045	12.9	0.0	1.2	1	0	0	1	1	1	0	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_9	PF13454.6	gi|390938635|ref|YP_006402373.1|	-	0.036	14.1	0.6	0.57	10.2	0.0	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
3HCDH_N	PF02737.18	gi|390938635|ref|YP_006402373.1|	-	0.043	13.7	0.2	0.077	12.9	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|390938635|ref|YP_006402373.1|	-	0.061	12.9	0.1	0.1	12.2	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
HI0933_like	PF03486.14	gi|390938635|ref|YP_006402373.1|	-	0.12	11.0	1.8	4.3	5.9	0.4	2.2	2	0	0	2	2	2	0	HI0933-like	protein
Amino_oxidase	PF01593.24	gi|390938635|ref|YP_006402373.1|	-	0.18	11.1	0.0	1.7	7.9	0.0	2.0	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
Sacchrp_dh_NADP	PF03435.18	gi|390938635|ref|YP_006402373.1|	-	0.2	11.9	2.5	0.78	10.0	0.4	2.6	3	0	0	3	3	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
Trp_halogenase	PF04820.14	gi|390938635|ref|YP_006402373.1|	-	1.5	7.6	4.4	0.93	8.3	0.7	1.9	2	0	0	2	2	2	0	Tryptophan	halogenase
Pyr_redox_2	PF07992.14	gi|390938636|ref|YP_006402374.1|	-	1.7e-32	112.8	3.3	2.2e-32	112.5	3.3	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|390938636|ref|YP_006402374.1|	-	2.6e-11	43.9	5.3	7.2e-05	23.3	0.2	3.3	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|390938636|ref|YP_006402374.1|	-	4.3e-11	42.8	5.6	7.8e-11	42.0	1.1	2.7	2	2	2	4	4	4	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|390938636|ref|YP_006402374.1|	-	1.1e-10	41.3	4.4	9e-05	21.9	0.1	3.0	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|390938636|ref|YP_006402374.1|	-	8.1e-08	31.4	7.3	2.3e-05	23.3	0.4	3.9	4	0	0	4	4	4	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|390938636|ref|YP_006402374.1|	-	1e-07	31.4	12.3	3.2e-05	23.2	1.6	3.6	3	1	0	4	4	4	2	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|390938636|ref|YP_006402374.1|	-	1.3e-06	28.6	1.0	0.0035	17.5	0.2	2.5	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|390938636|ref|YP_006402374.1|	-	1.7e-05	24.6	16.2	0.013	15.1	1.8	4.1	2	2	2	4	4	4	4	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|390938636|ref|YP_006402374.1|	-	3.3e-05	23.1	0.8	3.3e-05	23.1	0.8	2.5	2	1	1	3	3	3	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|390938636|ref|YP_006402374.1|	-	0.0005	19.4	5.6	0.0035	16.6	0.3	2.6	3	0	0	3	3	3	2	Thi4	family
FAD_binding_3	PF01494.19	gi|390938636|ref|YP_006402374.1|	-	0.00057	19.2	4.7	0.077	12.2	0.2	3.1	3	0	0	3	3	3	2	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|390938636|ref|YP_006402374.1|	-	0.0046	16.1	6.3	0.048	12.7	0.9	2.9	3	0	0	3	3	3	2	Lycopene	cyclase	protein
NAD_binding_7	PF13241.6	gi|390938636|ref|YP_006402374.1|	-	0.0057	17.1	1.1	0.097	13.1	0.1	2.6	2	1	0	2	2	2	1	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|390938636|ref|YP_006402374.1|	-	0.039	13.2	4.9	0.16	11.2	0.4	2.4	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF1667	PF07892.11	gi|390938637|ref|YP_006402375.1|	-	4.8e-29	100.2	2.2	6.5e-29	99.8	2.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1667)
GDPD	PF03009.17	gi|390938638|ref|YP_006402376.1|	-	3.2e-27	95.9	0.0	2.3e-21	76.7	0.0	2.1	1	1	1	2	2	2	2	Glycerophosphoryl	diester	phosphodiesterase	family
PI-PLC-X	PF00388.19	gi|390938638|ref|YP_006402376.1|	-	0.018	14.6	0.0	0.03	13.9	0.0	1.5	1	1	0	1	1	1	0	Phosphatidylinositol-specific	phospholipase	C,	X	domain
ThiP_synth	PF10120.9	gi|390938638|ref|YP_006402376.1|	-	0.056	13.1	0.1	2.8	7.6	0.0	2.2	2	0	0	2	2	2	0	Thiamine-phosphate	synthase
SQAPI	PF16845.5	gi|390938638|ref|YP_006402376.1|	-	0.091	13.1	0.1	0.19	12.1	0.1	1.5	1	0	0	1	1	1	0	Aspartic	acid	proteinase	inhibitor
Hydrolase_4	PF12146.8	gi|390938639|ref|YP_006402377.1|	-	2.4e-19	69.5	0.2	2e-17	63.3	0.1	2.1	1	1	0	2	2	2	1	Serine	aminopeptidase,	S33
Peptidase_S15	PF02129.18	gi|390938639|ref|YP_006402377.1|	-	5.4e-19	68.8	0.2	3.2e-18	66.3	0.4	1.8	2	0	0	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_1	PF00561.20	gi|390938639|ref|YP_006402377.1|	-	4.5e-15	56.0	0.0	7.4e-15	55.3	0.0	1.3	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|390938639|ref|YP_006402377.1|	-	2.6e-13	51.1	0.0	4.1e-13	50.4	0.0	1.3	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.21	gi|390938639|ref|YP_006402377.1|	-	1.7e-11	44.0	0.0	2.5e-06	27.1	0.1	2.1	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
DLH	PF01738.18	gi|390938639|ref|YP_006402377.1|	-	2.8e-09	36.9	0.1	1.9e-07	30.9	0.1	2.5	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
BAAT_C	PF08840.11	gi|390938639|ref|YP_006402377.1|	-	1.5e-05	25.0	0.0	2.5e-05	24.3	0.0	1.4	1	0	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DUF829	PF05705.14	gi|390938639|ref|YP_006402377.1|	-	0.00017	21.6	0.0	0.00023	21.2	0.0	1.3	1	0	0	1	1	1	1	Eukaryotic	protein	of	unknown	function	(DUF829)
FSH1	PF03959.13	gi|390938639|ref|YP_006402377.1|	-	0.0004	20.1	0.0	0.0037	17.0	0.0	2.1	1	1	1	2	2	2	1	Serine	hydrolase	(FSH1)
AXE1	PF05448.12	gi|390938639|ref|YP_006402377.1|	-	0.0014	17.4	0.5	0.42	9.2	0.1	2.2	1	1	1	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Esterase	PF00756.20	gi|390938639|ref|YP_006402377.1|	-	0.0031	17.2	0.0	0.0042	16.8	0.0	1.4	1	0	0	1	1	1	1	Putative	esterase
DUF676	PF05057.14	gi|390938639|ref|YP_006402377.1|	-	0.0066	16.0	0.0	0.011	15.2	0.0	1.3	1	0	0	1	1	1	1	Putative	serine	esterase	(DUF676)
Lipase	PF00151.19	gi|390938639|ref|YP_006402377.1|	-	0.011	15.0	0.0	0.016	14.6	0.0	1.1	1	0	0	1	1	1	0	Lipase
DUF1749	PF08538.10	gi|390938639|ref|YP_006402377.1|	-	0.031	13.4	0.5	0.045	12.8	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1749)
DUF2048	PF09752.9	gi|390938639|ref|YP_006402377.1|	-	0.065	12.3	0.1	3.5	6.6	0.1	2.1	2	0	0	2	2	2	0	Abhydrolase	domain	containing	18
MFS_1	PF07690.16	gi|390938640|ref|YP_006402378.1|	-	1.6e-34	119.4	47.5	1.6e-34	119.4	47.5	1.7	2	1	0	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|390938640|ref|YP_006402378.1|	-	7.2e-11	41.6	37.2	4e-10	39.1	14.1	2.8	3	0	0	3	3	3	2	Sugar	(and	other)	transporter
DUF3297	PF11730.8	gi|390938640|ref|YP_006402378.1|	-	0.016	15.1	0.0	2.5	8.0	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3297)
OATP	PF03137.20	gi|390938640|ref|YP_006402378.1|	-	0.02	13.2	23.1	0.0066	14.8	3.5	3.4	2	2	1	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
MFS_1_like	PF12832.7	gi|390938640|ref|YP_006402378.1|	-	0.087	11.7	33.2	0.022	13.6	27.2	2.7	2	1	0	2	2	2	0	MFS_1	like	family
BIV_Env	PF05858.12	gi|390938640|ref|YP_006402378.1|	-	2.6	6.1	9.7	0.39	8.8	0.3	2.7	3	0	0	3	3	3	0	Bovine	immunodeficiency	virus	surface	protein	(SU)
Exosortase_EpsH	PF09721.10	gi|390938641|ref|YP_006402379.1|	-	1.1e-08	35.0	19.8	1.1e-08	35.0	19.8	1.9	2	0	0	2	2	2	1	Transmembrane	exosortase	(Exosortase_EpsH)
AAA_3	PF07726.11	gi|390938642|ref|YP_006402380.1|	-	1.9e-34	118.3	0.0	3e-34	117.7	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|390938642|ref|YP_006402380.1|	-	6.2e-18	64.4	0.0	1.6e-17	63.1	0.0	1.7	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|390938642|ref|YP_006402380.1|	-	1.2e-12	48.0	0.0	2.2e-12	47.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|390938642|ref|YP_006402380.1|	-	2.8e-05	23.9	0.1	0.00022	21.0	0.1	2.1	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Sigma54_activat	PF00158.26	gi|390938642|ref|YP_006402380.1|	-	0.00035	20.3	0.1	0.92	9.2	0.0	2.6	3	0	0	3	3	3	2	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|390938642|ref|YP_006402380.1|	-	0.0015	17.9	0.6	0.013	14.8	0.2	2.2	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.22	gi|390938642|ref|YP_006402380.1|	-	0.0016	18.8	0.0	0.0031	17.9	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
AAA	PF00004.29	gi|390938642|ref|YP_006402380.1|	-	0.0017	18.8	0.1	0.0059	17.0	0.1	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.6	gi|390938642|ref|YP_006402380.1|	-	0.0061	16.4	0.0	0.01	15.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|390938642|ref|YP_006402380.1|	-	0.015	15.7	0.0	0.035	14.5	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|390938642|ref|YP_006402380.1|	-	0.046	14.0	0.0	0.12	12.6	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
TIP49	PF06068.13	gi|390938642|ref|YP_006402380.1|	-	0.05	12.8	0.2	0.081	12.1	0.2	1.2	1	0	0	1	1	1	0	TIP49	P-loop	domain
AAA_30	PF13604.6	gi|390938642|ref|YP_006402380.1|	-	0.055	13.2	0.1	0.097	12.4	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|390938642|ref|YP_006402380.1|	-	0.14	12.7	0.0	0.28	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DEAD	PF00270.29	gi|390938642|ref|YP_006402380.1|	-	0.15	11.8	0.1	0.41	10.4	0.2	1.5	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
AAA_25	PF13481.6	gi|390938642|ref|YP_006402380.1|	-	0.18	11.3	0.0	0.4	10.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|390938642|ref|YP_006402380.1|	-	0.3	11.4	0.9	0.93	9.8	0.6	1.9	2	0	0	2	2	2	0	AAA	domain
DPM2	PF07297.12	gi|390938643|ref|YP_006402381.1|	-	1.6	9.1	9.3	1.4	9.3	2.5	3.1	2	1	0	2	2	2	0	Dolichol	phosphate-mannose	biosynthesis	regulatory	protein	(DPM2)
OpgC_C	PF10129.9	gi|390938645|ref|YP_006402383.1|	-	0.014	14.3	0.9	0.018	14.0	0.5	1.2	1	1	0	1	1	1	0	OpgC	protein
DUF898	PF05987.13	gi|390938645|ref|YP_006402383.1|	-	0.026	13.6	1.0	0.031	13.3	1.0	1.0	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF898)
Fun_ATP-synt_8	PF05933.13	gi|390938645|ref|YP_006402383.1|	-	0.15	12.2	0.1	0.15	12.2	0.1	2.7	3	1	0	3	3	3	0	Fungal	ATP	synthase	protein	8	(A6L)
DUF4129	PF13559.6	gi|390938646|ref|YP_006402384.1|	-	1.7e-06	28.2	1.9	5e-06	26.7	2.2	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
DUF58	PF01882.18	gi|390938647|ref|YP_006402385.1|	-	5e-08	33.1	0.0	1.1e-07	32.0	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF3368	PF11848.8	gi|390938648|ref|YP_006402386.1|	-	0.035	13.9	2.0	0.095	12.5	0.1	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3368)
TPR_19	PF14559.6	gi|390938648|ref|YP_006402386.1|	-	0.048	14.2	0.4	0.98	10.0	0.1	2.1	2	0	0	2	2	2	0	Tetratricopeptide	repeat
YfdX	PF10938.8	gi|390938648|ref|YP_006402386.1|	-	0.076	12.9	0.3	0.1	12.5	0.3	1.2	1	0	0	1	1	1	0	YfdX	protein
DUF1980	PF09323.10	gi|390938648|ref|YP_006402386.1|	-	0.24	11.3	1.2	13	5.6	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1980)
DUF1616	PF07760.11	gi|390938649|ref|YP_006402387.1|	-	3.1e-05	23.5	0.0	3.8e-05	23.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF1616	PF07760.11	gi|390938650|ref|YP_006402388.1|	-	3e-31	108.9	8.5	3.8e-31	108.6	8.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF4395	PF14340.6	gi|390938650|ref|YP_006402388.1|	-	0.56	10.5	3.9	3.9	7.8	3.9	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4395)
Hemerythrin	PF01814.23	gi|390938651|ref|YP_006402389.1|	-	0.0028	18.3	1.2	0.0049	17.5	1.2	1.5	1	0	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
Nup84_Nup100	PF04121.13	gi|390938651|ref|YP_006402389.1|	-	0.0044	15.2	1.7	0.0053	14.9	1.7	1.1	1	0	0	1	1	1	1	Nuclear	pore	protein	84	/	107
Thiamine_BP	PF01910.17	gi|390938652|ref|YP_006402390.1|	-	6.6e-24	83.6	0.2	7.4e-24	83.5	0.2	1.0	1	0	0	1	1	1	1	Thiamine-binding	protein
Mod_r	PF07200.13	gi|390938653|ref|YP_006402391.1|	-	0.001	19.2	0.9	0.001	19.2	0.9	1.6	2	0	0	2	2	2	1	Modifier	of	rudimentary	(Mod(r))	protein
DivIC	PF04977.15	gi|390938653|ref|YP_006402391.1|	-	0.0016	18.2	0.6	0.0036	17.0	0.6	1.6	1	0	0	1	1	1	1	Septum	formation	initiator
Sigma70_r4_2	PF08281.12	gi|390938653|ref|YP_006402391.1|	-	0.0046	16.6	0.0	0.012	15.2	0.0	1.8	1	0	0	1	1	1	1	Sigma-70,	region	4
ZapB	PF06005.12	gi|390938653|ref|YP_006402391.1|	-	0.0072	16.8	4.0	0.0072	16.8	4.0	1.7	2	0	0	2	2	1	1	Cell	division	protein	ZapB
Spc7	PF08317.11	gi|390938653|ref|YP_006402391.1|	-	0.012	14.5	1.4	0.015	14.2	1.4	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
TolA_bind_tri	PF16331.5	gi|390938653|ref|YP_006402391.1|	-	0.012	15.6	1.6	0.025	14.6	1.6	1.5	1	0	0	1	1	1	0	TolA	binding	protein	trimerisation
Vip3A_N	PF12495.8	gi|390938653|ref|YP_006402391.1|	-	0.019	14.9	0.1	0.033	14.1	0.1	1.3	1	0	0	1	1	1	0	Vegetative	insecticide	protein	3A	N	terminal
Med9	PF07544.13	gi|390938653|ref|YP_006402391.1|	-	0.023	14.8	0.8	0.14	12.3	0.6	2.3	2	1	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
FlaC_arch	PF05377.11	gi|390938653|ref|YP_006402391.1|	-	0.031	14.7	3.6	0.13	12.7	0.7	2.7	2	1	1	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
HALZ	PF02183.18	gi|390938653|ref|YP_006402391.1|	-	0.069	13.4	4.4	0.17	12.1	4.4	1.7	1	0	0	1	1	1	0	Homeobox	associated	leucine	zipper
Prefoldin_2	PF01920.20	gi|390938653|ref|YP_006402391.1|	-	0.069	13.1	3.3	0.16	12.0	3.3	1.7	1	1	0	1	1	1	0	Prefoldin	subunit
Wtap	PF17098.5	gi|390938653|ref|YP_006402391.1|	-	0.08	12.9	3.8	0.16	11.9	3.8	1.5	1	0	0	1	1	1	0	WTAP/Mum2p	family
HTH_23	PF13384.6	gi|390938653|ref|YP_006402391.1|	-	0.081	12.7	0.0	0.18	11.7	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
Swi5	PF07061.11	gi|390938653|ref|YP_006402391.1|	-	0.13	12.3	1.7	0.5	10.5	1.0	2.2	2	0	0	2	2	2	0	Swi5
Syntaxin-6_N	PF09177.11	gi|390938653|ref|YP_006402391.1|	-	0.14	12.7	1.4	0.51	10.9	1.4	2.0	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
UPF0449	PF15136.6	gi|390938653|ref|YP_006402391.1|	-	0.19	12.2	1.5	1.7	9.1	0.6	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
bZIP_2	PF07716.15	gi|390938653|ref|YP_006402391.1|	-	0.36	11.0	6.6	0.28	11.3	4.1	1.8	1	1	1	2	2	2	0	Basic	region	leucine	zipper
TMF_DNA_bd	PF12329.8	gi|390938653|ref|YP_006402391.1|	-	1.1	9.3	9.3	1.5	8.9	6.4	2.6	2	1	1	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
Peptidase_M19	PF01244.21	gi|390938654|ref|YP_006402392.1|	-	3.2e-71	240.1	0.0	3.9e-71	239.8	0.0	1.0	1	0	0	1	1	1	1	Membrane	dipeptidase	(Peptidase	family	M19)
Amidohydro_2	PF04909.14	gi|390938654|ref|YP_006402392.1|	-	0.073	12.8	0.0	0.16	11.7	0.0	1.6	1	1	0	1	1	1	0	Amidohydrolase
DUF4428	PF14471.6	gi|390938655|ref|YP_006402393.1|	-	0.0013	18.6	0.0	0.0018	18.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
PhnA_Zn_Ribbon	PF08274.12	gi|390938655|ref|YP_006402393.1|	-	0.0018	18.2	0.2	1	9.4	0.0	2.2	2	0	0	2	2	2	2	PhnA	Zinc-Ribbon
YacG	PF03884.14	gi|390938655|ref|YP_006402393.1|	-	0.002	17.8	0.8	0.21	11.4	0.2	2.2	2	0	0	2	2	2	1	DNA	gyrase	inhibitor	YacG
Zn_Tnp_IS1595	PF12760.7	gi|390938655|ref|YP_006402393.1|	-	0.002	18.0	3.3	0.19	11.7	0.1	2.1	1	1	1	2	2	2	2	Transposase	zinc-ribbon	domain
zf-C2H2_9	PF16293.5	gi|390938655|ref|YP_006402393.1|	-	0.0025	17.6	0.3	0.15	11.9	0.0	2.1	2	0	0	2	2	2	1	C2H2	type	zinc-finger	(1	copy)
zf-ribbon_3	PF13248.6	gi|390938655|ref|YP_006402393.1|	-	0.0034	16.7	3.5	0.13	11.7	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|390938655|ref|YP_006402393.1|	-	0.004	17.0	0.3	0.0099	15.8	0.3	1.7	1	1	0	1	1	1	1	SprT-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|390938655|ref|YP_006402393.1|	-	0.016	15.3	0.9	4.9	7.4	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-Di19	PF05605.12	gi|390938655|ref|YP_006402393.1|	-	0.016	15.5	0.5	0.9	9.9	0.1	2.1	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zinc_ribbon_9	PF14369.6	gi|390938655|ref|YP_006402393.1|	-	0.02	15.2	2.2	1.2	9.5	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon
DUF3268	PF11672.8	gi|390938655|ref|YP_006402393.1|	-	0.022	15.1	0.3	0.023	15.0	0.3	1.1	1	0	0	1	1	1	0	zinc-finger-containing	domain
zf-TFIIB	PF13453.6	gi|390938655|ref|YP_006402393.1|	-	0.03	13.6	0.8	0.066	12.6	0.8	1.5	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
DUF2197	PF09963.9	gi|390938655|ref|YP_006402393.1|	-	0.033	14.5	0.5	0.055	13.7	0.2	1.7	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
CpXC	PF14353.6	gi|390938655|ref|YP_006402393.1|	-	0.042	13.9	0.1	1.8	8.6	0.0	2.0	2	0	0	2	2	2	0	CpXC	protein
UPF0547	PF10571.9	gi|390938655|ref|YP_006402393.1|	-	0.046	13.8	1.6	1.5	8.9	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Cys_rich_CPXG	PF14255.6	gi|390938655|ref|YP_006402393.1|	-	0.059	13.3	0.6	1.3	9.0	0.1	2.2	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
Zn_Tnp_IS1	PF03811.13	gi|390938655|ref|YP_006402393.1|	-	0.059	13.1	2.3	1.1	9.0	0.3	2.2	2	0	0	2	2	2	0	InsA	N-terminal	domain
zf-C2H2_4	PF13894.6	gi|390938655|ref|YP_006402393.1|	-	0.06	14.2	3.5	1.3	10.0	0.4	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Lar_restr_allev	PF14354.6	gi|390938655|ref|YP_006402393.1|	-	0.084	13.3	4.0	0.36	11.3	4.0	1.9	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
ADD_ATRX	PF17981.1	gi|390938655|ref|YP_006402393.1|	-	0.087	12.7	0.3	0.12	12.2	0.3	1.3	1	0	0	1	1	1	0	Cysteine	Rich	ADD	domain
TF_Zn_Ribbon	PF08271.12	gi|390938655|ref|YP_006402393.1|	-	0.1	12.2	6.1	1.5	8.4	0.6	2.4	2	1	0	2	2	2	0	TFIIB	zinc-binding
zf-ACC	PF17848.1	gi|390938655|ref|YP_006402393.1|	-	0.15	12.2	3.2	7.5	6.7	0.5	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zinc_ribbon_10	PF10058.9	gi|390938655|ref|YP_006402393.1|	-	0.21	11.3	2.7	1.3	8.8	0.2	2.1	1	1	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-C2HC_2	PF13913.6	gi|390938655|ref|YP_006402393.1|	-	0.37	10.7	4.3	1.2	9.1	0.1	2.4	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zf-H2C2_2	PF13465.6	gi|390938655|ref|YP_006402393.1|	-	0.47	11.0	2.8	15	6.2	0.2	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
DNA_ligase_ZBD	PF03119.16	gi|390938655|ref|YP_006402393.1|	-	0.91	9.6	5.9	1	9.4	0.6	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
MoCF_biosynth	PF00994.24	gi|390938656|ref|YP_006402394.1|	-	8.9e-34	116.2	0.0	1.3e-33	115.7	0.0	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
ACT_7	PF13840.6	gi|390938657|ref|YP_006402395.1|	-	1.3e-09	37.7	0.5	3.6e-09	36.3	0.4	1.8	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.25	gi|390938657|ref|YP_006402395.1|	-	0.00016	21.4	1.1	0.0014	18.3	0.1	2.7	3	0	0	3	3	3	1	ACT	domain
HTH_33	PF13592.6	gi|390938657|ref|YP_006402395.1|	-	0.012	15.3	0.0	0.036	13.7	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
SBP_bac_5	PF00496.22	gi|390938658|ref|YP_006402396.1|	-	1.9e-73	247.6	2.1	3.1e-73	246.9	2.1	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
BPD_transp_1	PF00528.22	gi|390938659|ref|YP_006402397.1|	-	1.9e-23	83.2	21.2	1.9e-23	83.2	21.2	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|390938659|ref|YP_006402397.1|	-	3.2e-06	27.0	0.0	3.2e-06	27.0	0.0	2.8	3	0	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
OPT	PF03169.15	gi|390938660|ref|YP_006402398.1|	-	5.6e-104	349.0	50.5	6.7e-104	348.7	50.5	1.1	1	0	0	1	1	1	1	OPT	oligopeptide	transporter	protein
Endonuclease_5	PF04493.14	gi|390938661|ref|YP_006402399.1|	-	7.5e-53	179.2	0.0	9e-53	178.9	0.0	1.0	1	0	0	1	1	1	1	Endonuclease	V
UvrC_HhH_N	PF08459.11	gi|390938661|ref|YP_006402399.1|	-	0.16	11.9	0.0	0.31	11.0	0.0	1.6	1	1	0	1	1	1	0	UvrC	Helix-hairpin-helix	N-terminal
DUF2204	PF09970.9	gi|390938662|ref|YP_006402400.1|	-	3.5e-66	222.3	2.4	4e-66	222.1	2.4	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
DUF3458_C	PF17432.2	gi|390938662|ref|YP_006402400.1|	-	0.21	10.9	0.0	0.25	10.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3458_C)	ARM	repeats
Ribosomal_L40e	PF01020.17	gi|390938663|ref|YP_006402401.1|	-	4.3e-09	36.1	2.8	4.9e-09	35.9	2.8	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
zinc_ribbon_2	PF13240.6	gi|390938663|ref|YP_006402401.1|	-	0.00015	21.3	2.8	0.00022	20.8	2.8	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|390938663|ref|YP_006402401.1|	-	0.0033	17.4	1.6	0.0041	17.1	1.6	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
CpXC	PF14353.6	gi|390938663|ref|YP_006402401.1|	-	0.0036	17.3	0.4	0.024	14.7	0.0	1.9	1	1	1	2	2	2	1	CpXC	protein
zf-RanBP	PF00641.18	gi|390938663|ref|YP_006402401.1|	-	0.029	13.7	2.6	0.1	11.9	2.5	1.9	1	1	1	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
zf-ribbon_3	PF13248.6	gi|390938663|ref|YP_006402401.1|	-	0.036	13.5	1.7	0.05	13.0	1.7	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
HypA	PF01155.19	gi|390938663|ref|YP_006402401.1|	-	0.052	13.6	0.3	0.061	13.3	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|390938663|ref|YP_006402401.1|	-	0.057	13.1	1.8	0.13	12.0	1.8	1.6	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
DUF35_N	PF12172.8	gi|390938663|ref|YP_006402401.1|	-	0.06	13.2	4.8	0.082	12.8	4.8	1.2	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-CCHC_2	PF13696.6	gi|390938663|ref|YP_006402401.1|	-	1.1	9.1	8.7	6.4	6.7	1.8	2.2	2	0	0	2	2	2	0	Zinc	knuckle
LPG_synthase_TM	PF03706.13	gi|390938664|ref|YP_006402402.1|	-	5.4e-19	68.9	21.3	7.5e-19	68.4	21.3	1.2	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
eRF1_2	PF03464.15	gi|390938665|ref|YP_006402403.1|	-	1.2e-40	138.9	0.0	2e-40	138.2	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.15	gi|390938665|ref|YP_006402403.1|	-	1.9e-19	70.2	0.4	5.8e-18	65.4	0.1	2.9	2	1	0	2	2	2	1	eRF1	domain	3
acVLRF1	PF18859.1	gi|390938665|ref|YP_006402403.1|	-	4.1e-19	69.2	0.0	2.2e-18	66.8	0.0	2.1	2	1	1	3	3	3	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|390938665|ref|YP_006402403.1|	-	3.3e-12	46.8	0.0	1.2e-11	45.0	0.0	2.0	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
DUF86	PF01934.17	gi|390938665|ref|YP_006402403.1|	-	0.031	14.1	0.0	0.25	11.2	0.0	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	DUF86
eRF1_1	PF03463.15	gi|390938665|ref|YP_006402403.1|	-	0.09	12.8	0.0	0.15	12.1	0.0	1.4	1	0	0	1	1	1	0	eRF1	domain	1
SpoU_sub_bind	PF08032.12	gi|390938665|ref|YP_006402403.1|	-	0.26	11.6	2.3	0.34	11.2	0.1	2.4	3	0	0	3	3	3	0	RNA	2'-O	ribose	methyltransferase	substrate	binding
SWIB	PF02201.18	gi|390938666|ref|YP_006402404.1|	-	0.082	12.8	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	SWIB/MDM2	domain
DUF5603	PF18231.1	gi|390938667|ref|YP_006402405.1|	-	1.5e-23	83.1	0.0	2.7e-23	82.3	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5603)
ParBc	PF02195.18	gi|390938667|ref|YP_006402405.1|	-	1.1e-12	48.0	0.0	1.8e-12	47.4	0.0	1.3	1	0	0	1	1	1	1	ParB-like	nuclease	domain
DUF1015	PF06245.11	gi|390938667|ref|YP_006402405.1|	-	9.4e-05	21.4	0.0	0.056	12.3	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1015)
Imm9	PF15587.6	gi|390938667|ref|YP_006402405.1|	-	0.12	12.1	0.2	0.24	11.0	0.2	1.4	1	0	0	1	1	1	0	Immunity	protein	9
DndB	PF14072.6	gi|390938667|ref|YP_006402405.1|	-	0.13	11.4	0.0	0.19	10.9	0.0	1.2	1	0	0	1	1	1	0	DNA-sulfur	modification-associated
2-Hacid_dh_C	PF02826.19	gi|390938668|ref|YP_006402406.1|	-	1.1e-71	239.9	0.0	2.1e-71	239.0	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|390938668|ref|YP_006402406.1|	-	1.7e-36	124.8	0.1	2e-36	124.6	0.1	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|390938668|ref|YP_006402406.1|	-	2.5e-07	31.0	0.3	1.1e-05	25.7	0.0	2.3	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Nitro_FeMo-Co	PF02579.17	gi|390938668|ref|YP_006402406.1|	-	0.0016	18.7	0.3	5.4	7.4	0.0	3.2	3	0	0	3	3	3	2	Dinitrogenase	iron-molybdenum	cofactor
IlvN	PF07991.12	gi|390938668|ref|YP_006402406.1|	-	0.0033	17.0	0.1	0.015	14.8	0.0	2.1	3	0	0	3	3	3	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Shikimate_DH	PF01488.20	gi|390938668|ref|YP_006402406.1|	-	0.0039	17.2	0.6	0.015	15.3	0.1	2.0	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|390938668|ref|YP_006402406.1|	-	0.0085	16.7	0.0	0.043	14.4	0.0	2.2	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.18	gi|390938668|ref|YP_006402406.1|	-	0.021	14.7	0.1	0.097	12.5	0.0	2.0	2	1	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|390938668|ref|YP_006402406.1|	-	0.046	14.5	0.1	0.23	12.3	0.0	2.3	2	1	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Sacchrp_dh_NADP	PF03435.18	gi|390938668|ref|YP_006402406.1|	-	0.12	12.7	1.7	6	7.1	0.5	3.0	2	2	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
DUF3344	PF11824.8	gi|390938671|ref|YP_006402409.1|	-	0.048	13.3	0.0	0.07	12.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3344)
tRNA_deacylase	PF04414.12	gi|390938672|ref|YP_006402410.1|	-	3.5e-62	209.6	0.0	4.6e-62	209.2	0.0	1.1	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
Asparaginase	PF00710.20	gi|390938673|ref|YP_006402411.1|	-	2.1e-56	190.5	0.0	4.2e-56	189.5	0.0	1.5	1	0	0	1	1	1	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|390938673|ref|YP_006402411.1|	-	1.1e-32	112.6	0.0	1.2e-31	109.3	0.0	2.2	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|390938673|ref|YP_006402411.1|	-	5.4e-18	64.1	0.4	1.1e-17	63.0	0.4	1.6	1	0	0	1	1	1	1	GatD	N-terminal	domain
Peripla_BP_4	PF13407.6	gi|390938673|ref|YP_006402411.1|	-	0.034	13.7	0.0	0.52	9.8	0.0	2.1	2	0	0	2	2	2	0	Periplasmic	binding	protein	domain
FeoA	PF04023.14	gi|390938673|ref|YP_006402411.1|	-	0.12	12.6	0.0	31	4.9	0.0	2.8	2	0	0	2	2	2	0	FeoA	domain
GatB_N	PF02934.15	gi|390938674|ref|YP_006402412.1|	-	1.6e-71	240.9	0.0	2.2e-71	240.5	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|390938674|ref|YP_006402412.1|	-	6.9e-22	77.9	2.4	8.5e-22	77.6	1.1	1.9	2	0	0	2	2	2	1	GatB	domain
GAD	PF02938.14	gi|390938674|ref|YP_006402412.1|	-	3.6e-18	65.6	0.1	1.1e-17	64.0	0.0	1.9	2	0	0	2	2	2	1	GAD	domain
YqeY	PF09424.10	gi|390938674|ref|YP_006402412.1|	-	0.0001	22.4	1.3	0.0003	20.9	1.3	1.8	1	0	0	1	1	1	1	Yqey-like	protein
ATP-cone	PF03477.16	gi|390938674|ref|YP_006402412.1|	-	0.072	13.7	0.9	1.5	9.4	0.0	3.1	1	1	0	2	2	2	0	ATP	cone	domain
Ub-Mut7C	PF14451.6	gi|390938674|ref|YP_006402412.1|	-	0.11	12.3	0.0	1.5	8.7	0.0	2.6	2	0	0	2	2	2	0	Mut7-C	ubiquitin
Tudor_FRX1	PF18336.1	gi|390938675|ref|YP_006402413.1|	-	0.18	11.8	0.0	0.61	10.1	0.0	1.9	1	0	0	1	1	1	0	Fragile	X	mental	retardation	Tudor	domain
HTH_IclR	PF09339.10	gi|390938676|ref|YP_006402414.1|	-	0.087	12.6	0.2	1	9.2	0.1	2.4	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
eIF-5a	PF01287.20	gi|390938677|ref|YP_006402415.1|	-	1.1e-05	25.4	0.6	1.7e-05	24.8	0.6	1.3	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP	PF01132.20	gi|390938677|ref|YP_006402415.1|	-	1.6e-05	24.8	0.7	2.8e-05	24.1	0.7	1.4	1	0	0	1	1	1	1	Elongation	factor	P	(EF-P)	OB	domain
EFP_N	PF08207.12	gi|390938677|ref|YP_006402415.1|	-	3.6e-05	23.7	0.2	0.00025	21.0	0.0	2.1	2	0	0	2	2	2	1	Elongation	factor	P	(EF-P)	KOW-like	domain
CN_hydrolase	PF00795.22	gi|390938679|ref|YP_006402417.1|	-	3.5e-06	26.5	0.0	4.6e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Topoisom_bac	PF01131.20	gi|390938680|ref|YP_006402418.1|	-	1.9e-79	267.6	0.1	3.4e-79	266.8	0.1	1.4	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|390938680|ref|YP_006402418.1|	-	3.8e-24	84.9	0.1	1.9e-23	82.6	0.1	2.3	1	0	0	1	1	1	1	Toprim	domain
DEAD	PF00270.29	gi|390938680|ref|YP_006402418.1|	-	1.3e-14	54.3	0.0	3.9e-14	52.8	0.0	1.8	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
zf_Rg	PF17915.1	gi|390938680|ref|YP_006402418.1|	-	1.1e-09	37.6	0.3	3.1e-09	36.1	0.3	1.8	1	0	0	1	1	1	1	Reverse	gyrase	zinc	finger
Helicase_C	PF00271.31	gi|390938680|ref|YP_006402418.1|	-	1.4e-08	35.0	0.0	0.11	12.9	0.0	4.7	4	0	0	4	4	4	2	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|390938680|ref|YP_006402418.1|	-	3.6e-07	30.3	0.1	1.1e-06	28.8	0.1	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
zf-dskA_traR	PF01258.17	gi|390938680|ref|YP_006402418.1|	-	0.0049	16.8	1.8	0.016	15.2	1.8	1.9	1	0	0	1	1	1	1	Prokaryotic	dksA/traR	C4-type	zinc	finger
Ofd1_CTDD	PF10637.9	gi|390938680|ref|YP_006402418.1|	-	0.017	14.5	0.1	0.033	13.6	0.1	1.4	1	0	0	1	1	1	0	Oxoglutarate	and	iron-dependent	oxygenase	degradation	C-term
DUF1890	PF09001.11	gi|390938680|ref|YP_006402418.1|	-	0.12	12.8	0.0	0.77	10.2	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1890)
Zn-ribbon_8	PF09723.10	gi|390938680|ref|YP_006402418.1|	-	2.2	8.4	5.8	20	5.4	1.0	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
SSF	PF00474.17	gi|390938681|ref|YP_006402419.1|	-	1.8e-19	69.9	36.7	1.8e-19	69.9	36.7	1.9	2	1	1	3	3	3	1	Sodium:solute	symporter	family
MarR_2	PF12802.7	gi|390938683|ref|YP_006402421.1|	-	1.1e-07	31.6	0.1	2.5e-07	30.5	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|390938683|ref|YP_006402421.1|	-	4.1e-06	26.2	1.2	7e-05	22.3	0.5	2.7	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|390938683|ref|YP_006402421.1|	-	4.2e-05	23.4	0.1	0.00011	22.1	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|390938683|ref|YP_006402421.1|	-	0.00039	20.9	0.1	0.0011	19.4	0.1	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|390938683|ref|YP_006402421.1|	-	0.00083	19.2	0.2	0.0025	17.6	0.2	1.8	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|390938683|ref|YP_006402421.1|	-	0.00092	19.1	0.3	0.0019	18.2	0.3	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|390938683|ref|YP_006402421.1|	-	0.0021	17.6	0.7	0.0048	16.4	0.4	1.8	2	0	0	2	2	2	1	CodY	helix-turn-helix	domain
HTH_5	PF01022.20	gi|390938683|ref|YP_006402421.1|	-	0.0031	17.3	0.7	0.053	13.4	0.2	2.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.6	gi|390938683|ref|YP_006402421.1|	-	0.0036	17.2	1.4	0.0052	16.7	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|390938683|ref|YP_006402421.1|	-	0.0058	16.7	0.2	0.018	15.1	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|390938683|ref|YP_006402421.1|	-	0.006	16.8	0.2	0.054	13.7	0.1	2.4	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Cdc6_C	PF09079.11	gi|390938683|ref|YP_006402421.1|	-	0.025	14.5	0.1	0.064	13.2	0.1	1.7	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
TBPIP	PF07106.13	gi|390938683|ref|YP_006402421.1|	-	0.03	14.2	0.1	0.083	12.8	0.1	1.8	1	0	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
Mnd1	PF03962.15	gi|390938683|ref|YP_006402421.1|	-	0.034	14.4	0.2	0.48	10.7	0.0	2.9	3	1	1	4	4	3	0	Mnd1	HTH	domain
LysR_substrate	PF03466.20	gi|390938683|ref|YP_006402421.1|	-	0.036	13.4	0.0	0.054	12.9	0.0	1.2	1	0	0	1	1	1	0	LysR	substrate	binding	domain
DprA_WH	PF17782.1	gi|390938683|ref|YP_006402421.1|	-	0.047	13.8	0.0	0.12	12.5	0.0	1.6	1	0	0	1	1	1	0	DprA	winged	helix	domain
DUF2250	PF10007.9	gi|390938683|ref|YP_006402421.1|	-	0.052	13.7	0.2	0.1	12.7	0.2	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
B-block_TFIIIC	PF04182.12	gi|390938683|ref|YP_006402421.1|	-	0.054	13.7	0.3	0.12	12.5	0.3	1.6	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_IclR	PF09339.10	gi|390938683|ref|YP_006402421.1|	-	0.06	13.2	0.1	0.13	12.1	0.1	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_46	PF15977.5	gi|390938683|ref|YP_006402421.1|	-	0.091	12.8	1.1	0.28	11.2	1.1	1.9	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA	binding
GntR	PF00392.21	gi|390938683|ref|YP_006402421.1|	-	0.16	11.6	0.1	0.28	10.9	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Lipoprotein_9	PF03180.14	gi|390938683|ref|YP_006402421.1|	-	0.17	11.0	0.0	0.28	10.3	0.0	1.4	1	0	0	1	1	1	0	NLPA	lipoprotein
UPRTase	PF14681.6	gi|390938684|ref|YP_006402422.1|	-	3.9e-40	137.5	0.2	4.4e-40	137.3	0.2	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|390938684|ref|YP_006402422.1|	-	8.5e-07	28.6	0.4	2.6e-06	27.0	0.4	1.7	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|390938684|ref|YP_006402422.1|	-	0.0012	18.4	0.0	0.0016	18.0	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase
NTP_transferase	PF00483.23	gi|390938685|ref|YP_006402423.1|	-	5.7e-28	98.1	0.0	6.8e-28	97.9	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|390938685|ref|YP_006402423.1|	-	5.6e-11	43.1	0.0	6.3e-11	42.9	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
MatE	PF01554.18	gi|390938686|ref|YP_006402424.1|	-	1.6e-44	151.4	34.3	1.7e-28	99.3	7.7	2.7	2	1	1	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|390938686|ref|YP_006402424.1|	-	2.8e-10	40.4	20.8	2.5e-09	37.3	7.7	4.7	2	2	2	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
Glyco_tran_28_C	PF04101.16	gi|390938687|ref|YP_006402425.1|	-	2.6e-05	24.3	0.0	4.2e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Glyco_transf_4	PF13439.6	gi|390938687|ref|YP_006402425.1|	-	0.00077	19.5	0.2	0.059	13.4	0.0	2.3	2	0	0	2	2	2	2	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|390938687|ref|YP_006402425.1|	-	0.028	14.8	0.0	0.18	12.2	0.0	2.0	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
Alg14	PF08660.11	gi|390938687|ref|YP_006402425.1|	-	0.078	12.9	0.0	0.19	11.7	0.0	1.7	1	0	0	1	1	1	0	Oligosaccharide	biosynthesis	protein	Alg14	like
Cation_efflux	PF01545.21	gi|390938688|ref|YP_006402426.1|	-	2.6e-16	60.0	23.8	3.1e-16	59.7	23.8	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|390938688|ref|YP_006402426.1|	-	8.8e-10	38.6	0.4	1.5e-09	37.8	0.4	1.4	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
IL34	PF15036.6	gi|390938689|ref|YP_006402427.1|	-	0.076	13.1	0.0	0.2	11.7	0.0	1.5	1	1	1	2	2	2	0	Interleukin	34
PfkB	PF00294.24	gi|390938691|ref|YP_006402429.1|	-	8.1e-39	133.7	0.0	1.1e-38	133.3	0.0	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
PNP_UDP_1	PF01048.20	gi|390938692|ref|YP_006402430.1|	-	1.3e-36	126.1	0.2	1.5e-36	125.8	0.2	1.1	1	0	0	1	1	1	1	Phosphorylase	superfamily
Metallophos_2	PF12850.7	gi|390938693|ref|YP_006402431.1|	-	4.5e-31	108.3	0.0	5.1e-31	108.1	0.0	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|390938693|ref|YP_006402431.1|	-	5.8e-09	36.7	1.9	7.8e-08	33.0	0.2	2.1	1	1	1	2	2	2	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|390938693|ref|YP_006402431.1|	-	0.0011	18.4	0.0	0.06	12.7	0.0	2.2	2	1	0	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
ArsA_HSP20	PF17886.1	gi|390938694|ref|YP_006402432.1|	-	1.6e-12	46.7	0.1	3.7e-12	45.6	0.1	1.6	1	1	1	2	2	2	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|390938694|ref|YP_006402432.1|	-	1.3e-09	38.1	1.3	8e-08	32.4	1.3	2.5	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
CS	PF04969.16	gi|390938694|ref|YP_006402432.1|	-	5.8e-05	24.0	0.4	0.00013	22.9	0.4	1.5	2	0	0	2	2	2	1	CS	domain
GvpH	PF05455.11	gi|390938694|ref|YP_006402432.1|	-	0.00011	22.3	0.0	0.00014	21.9	0.0	1.3	1	0	0	1	1	1	1	GvpH
DPCD	PF14913.6	gi|390938694|ref|YP_006402432.1|	-	0.049	13.0	0.1	0.081	12.3	0.1	1.3	1	0	0	1	1	1	0	DPCD	protein	family
PIH1_CS	PF18201.1	gi|390938694|ref|YP_006402432.1|	-	0.082	13.3	0.0	0.14	12.6	0.0	1.2	1	0	0	1	1	1	0	PIH1	CS-like	domain
Myosin_N	PF02736.19	gi|390938694|ref|YP_006402432.1|	-	0.11	12.3	2.1	0.72	9.7	0.5	2.5	1	1	1	2	2	2	0	Myosin	N-terminal	SH3-like	domain
UPF0047	PF01894.17	gi|390938695|ref|YP_006402433.1|	-	8e-33	113.0	0.1	9.6e-33	112.8	0.1	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
QRPTase_C	PF01729.19	gi|390938696|ref|YP_006402434.1|	-	1.6e-25	89.8	0.0	4e-25	88.5	0.0	1.6	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|390938696|ref|YP_006402434.1|	-	4.5e-06	26.6	0.0	8.3e-06	25.8	0.0	1.4	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
NAPRTase_C	PF17956.1	gi|390938696|ref|YP_006402434.1|	-	5.3e-05	23.6	0.0	0.00011	22.6	0.0	1.5	1	0	0	1	1	1	1	Nicotinate	phosphoribosyltransferase	C-terminal	domain
NAPRTase_N	PF17767.1	gi|390938696|ref|YP_006402434.1|	-	0.00026	21.4	0.0	0.33	11.3	0.0	2.3	1	1	1	2	2	2	2	Nicotinate	phosphoribosyltransferase	(NAPRTase)	N-terminal	domain
PDDEXK_10	PF07788.11	gi|390938696|ref|YP_006402434.1|	-	0.11	12.4	0.0	7.9	6.5	0.0	2.5	2	0	0	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
DUF910	PF06014.11	gi|390938697|ref|YP_006402435.1|	-	0.00091	19.2	0.2	0.0022	18.0	0.2	1.7	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF910)
C-C_Bond_Lyase	PF15617.6	gi|390938697|ref|YP_006402435.1|	-	0.1	11.7	0.0	0.14	11.3	0.0	1.1	1	0	0	1	1	1	0	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
NTP_transf_2	PF01909.23	gi|390938698|ref|YP_006402436.1|	-	0.03	14.6	0.0	0.055	13.8	0.0	1.5	1	0	0	1	1	1	0	Nucleotidyltransferase	domain
Metallophos_2	PF12850.7	gi|390938699|ref|YP_006402437.1|	-	0.033	14.4	0.0	0.062	13.5	0.0	1.5	1	1	0	1	1	1	0	Calcineurin-like	phosphoesterase	superfamily	domain
Succ_CoA_lig	PF13607.6	gi|390938700|ref|YP_006402438.1|	-	2.6e-53	179.5	0.1	5.5e-53	178.5	0.1	1.6	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|390938700|ref|YP_006402438.1|	-	1.5e-25	90.0	0.3	1.4e-24	86.8	0.1	2.5	3	0	0	3	3	3	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|390938700|ref|YP_006402438.1|	-	6.6e-19	68.4	0.2	3.2e-18	66.2	0.2	2.3	2	0	0	2	2	2	1	CoA	binding	domain
UPF0175	PF03683.13	gi|390938700|ref|YP_006402438.1|	-	0.052	13.3	0.0	0.28	10.9	0.0	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0175)
tRNA_bind	PF01588.20	gi|390938701|ref|YP_006402439.1|	-	3.7e-26	91.1	0.0	4.2e-26	90.9	0.0	1.0	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
TYW3	PF02676.14	gi|390938702|ref|YP_006402440.1|	-	1.6e-27	96.3	0.0	3.1e-27	95.3	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	TYW3
Sigma70_r1_1	PF03979.14	gi|390938702|ref|YP_006402440.1|	-	0.0092	16.0	0.1	0.016	15.2	0.1	1.4	1	0	0	1	1	1	1	Sigma-70	factor,	region	1.1
SpoU_sub_bind	PF08032.12	gi|390938702|ref|YP_006402440.1|	-	0.15	12.3	0.1	0.32	11.3	0.1	1.6	1	0	0	1	1	1	0	RNA	2'-O	ribose	methyltransferase	substrate	binding
AAA_assoc_C	PF09821.9	gi|390938705|ref|YP_006402443.1|	-	1.3e-08	35.4	0.1	2.6e-08	34.4	0.1	1.5	2	0	0	2	2	2	1	C-terminal	AAA-associated	domain
DUF505	PF04458.12	gi|390938705|ref|YP_006402443.1|	-	0.17	10.2	0.1	0.2	10.0	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
AAA_assoc_C	PF09821.9	gi|390938706|ref|YP_006402444.1|	-	2.8e-09	37.5	0.6	3.1e-09	37.4	0.6	1.0	1	0	0	1	1	1	1	C-terminal	AAA-associated	domain
Dynactin_p22	PF07426.11	gi|390938706|ref|YP_006402444.1|	-	0.04	13.8	1.0	0.048	13.5	1.0	1.1	1	0	0	1	1	1	0	Dynactin	subunit	p22
Aminotran_1_2	PF00155.21	gi|390938707|ref|YP_006402445.1|	-	5.6e-66	223.2	0.0	6.7e-66	222.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|390938707|ref|YP_006402445.1|	-	7.2e-08	31.4	0.0	1e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.19	gi|390938707|ref|YP_006402445.1|	-	0.0011	18.0	0.0	0.002	17.1	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
OKR_DC_1	PF01276.20	gi|390938707|ref|YP_006402445.1|	-	0.0053	15.5	0.0	0.19	10.4	0.0	2.7	1	1	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	major	domain
Radical_SAM	PF04055.21	gi|390938707|ref|YP_006402445.1|	-	0.055	13.8	0.4	1.7	9.0	0.4	2.5	1	1	0	1	1	1	0	Radical	SAM	superfamily
Beta_elim_lyase	PF01212.21	gi|390938707|ref|YP_006402445.1|	-	0.086	12.1	0.0	0.21	10.9	0.0	1.6	1	0	0	1	1	1	0	Beta-eliminating	lyase
Epimerase	PF01370.21	gi|390938708|ref|YP_006402446.1|	-	5.3e-31	107.9	0.0	6.4e-31	107.7	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|390938708|ref|YP_006402446.1|	-	1.4e-23	83.8	0.1	5.4e-23	81.9	0.1	1.8	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|390938708|ref|YP_006402446.1|	-	3.1e-15	56.0	0.0	4.7e-15	55.4	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|390938708|ref|YP_006402446.1|	-	7.8e-10	38.2	0.0	1e-09	37.8	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|390938708|ref|YP_006402446.1|	-	8e-10	38.3	0.1	6.5e-09	35.3	0.1	2.3	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|390938708|ref|YP_006402446.1|	-	6.3e-09	36.0	0.0	1.3e-08	34.9	0.0	1.6	2	0	0	2	2	2	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|390938708|ref|YP_006402446.1|	-	7.5e-07	28.6	0.0	2.4e-05	23.6	0.0	2.4	1	1	1	2	2	2	1	Male	sterility	protein
NmrA	PF05368.13	gi|390938708|ref|YP_006402446.1|	-	0.00019	21.1	0.0	0.00042	19.9	0.0	1.6	1	1	0	1	1	1	1	NmrA-like	family
DapB_N	PF01113.20	gi|390938708|ref|YP_006402446.1|	-	0.018	15.2	0.0	0.032	14.3	0.0	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
KR	PF08659.10	gi|390938708|ref|YP_006402446.1|	-	0.022	14.7	0.0	0.053	13.4	0.0	1.6	1	1	0	1	1	1	0	KR	domain
Semialdhyde_dh	PF01118.24	gi|390938708|ref|YP_006402446.1|	-	0.16	12.4	0.0	0.29	11.6	0.0	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Ribosomal_S30	PF04758.14	gi|390938709|ref|YP_006402447.1|	-	7e-14	51.8	0.6	8.5e-14	51.5	0.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S30
Nop	PF01798.18	gi|390938710|ref|YP_006402448.1|	-	9.2e-71	238.0	0.0	1.5e-70	237.3	0.0	1.3	1	0	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
FAST_1	PF06743.15	gi|390938710|ref|YP_006402448.1|	-	0.046	13.7	0.0	5.7	7.0	0.0	2.5	2	0	0	2	2	2	0	FAST	kinase-like	protein,	subdomain	1
Fibrillarin	PF01269.17	gi|390938711|ref|YP_006402449.1|	-	3.8e-103	343.5	0.0	4.3e-103	343.3	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
PCMT	PF01135.19	gi|390938711|ref|YP_006402449.1|	-	0.0013	18.5	0.0	0.0018	18.1	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
GCD14	PF08704.10	gi|390938711|ref|YP_006402449.1|	-	0.0053	16.5	0.0	0.011	15.4	0.0	1.5	1	1	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
HTH_3	PF01381.22	gi|390938712|ref|YP_006402450.1|	-	3.8e-10	39.7	0.2	1.2e-09	38.1	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix
HTH_31	PF13560.6	gi|390938712|ref|YP_006402450.1|	-	9.7e-06	25.8	0.0	2.3e-05	24.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|390938712|ref|YP_006402450.1|	-	0.00038	20.4	0.1	0.051	13.6	0.0	3.8	4	0	0	4	4	4	1	Crp-like	helix-turn-helix	domain
HTH_19	PF12844.7	gi|390938712|ref|YP_006402450.1|	-	0.003	17.5	0.1	0.0098	15.9	0.1	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
UPF0180	PF03698.13	gi|390938712|ref|YP_006402450.1|	-	0.0045	17.1	0.0	0.039	14.1	0.0	2.5	2	1	1	3	3	3	1	Uncharacterised	protein	family	(UPF0180)
HTH_11	PF08279.12	gi|390938712|ref|YP_006402450.1|	-	0.0079	16.1	0.0	0.05	13.5	0.0	2.5	3	0	0	3	3	3	1	HTH	domain
MerR	PF00376.23	gi|390938712|ref|YP_006402450.1|	-	0.0086	15.8	0.4	0.026	14.3	0.1	2.0	2	0	0	2	2	2	1	MerR	family	regulatory	protein
HTH_17	PF12728.7	gi|390938712|ref|YP_006402450.1|	-	0.042	14.0	0.1	0.13	12.5	0.1	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|390938712|ref|YP_006402450.1|	-	0.057	13.3	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
DUF3933	PF13069.6	gi|390938712|ref|YP_006402450.1|	-	0.082	12.8	0.4	0.34	10.8	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3933)
HTH_26	PF13443.6	gi|390938712|ref|YP_006402450.1|	-	0.092	13.2	0.0	0.21	12.0	0.0	1.6	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_23	PF13384.6	gi|390938712|ref|YP_006402450.1|	-	0.14	12.0	0.0	0.32	10.9	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
NTPase_1	PF03266.15	gi|390938713|ref|YP_006402451.1|	-	1.6e-49	168.1	0.1	2.2e-49	167.6	0.1	1.2	1	0	0	1	1	1	1	NTPase
MeaB	PF03308.16	gi|390938713|ref|YP_006402451.1|	-	0.0001	21.4	0.1	0.00031	19.8	0.0	1.8	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_18	PF13238.6	gi|390938713|ref|YP_006402451.1|	-	0.0003	21.3	0.0	0.00041	20.9	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|390938713|ref|YP_006402451.1|	-	0.00035	21.0	0.0	0.00059	20.3	0.0	1.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MMR_HSR1	PF01926.23	gi|390938713|ref|YP_006402451.1|	-	0.00052	20.1	0.1	0.0013	18.8	0.0	1.7	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
MobB	PF03205.14	gi|390938713|ref|YP_006402451.1|	-	0.00052	19.9	0.0	0.0011	18.9	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.12	gi|390938713|ref|YP_006402451.1|	-	0.0015	18.5	0.0	0.0027	17.7	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA_22	PF13401.6	gi|390938713|ref|YP_006402451.1|	-	0.002	18.4	0.1	0.0088	16.3	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|390938713|ref|YP_006402451.1|	-	0.0053	17.1	0.0	0.0094	16.3	0.0	1.4	1	0	0	1	1	1	1	RNA	helicase
AAA_5	PF07728.14	gi|390938713|ref|YP_006402451.1|	-	0.0073	16.3	0.4	0.54	10.3	0.0	2.7	2	1	1	3	3	3	1	AAA	domain	(dynein-related	subfamily)
KTI12	PF08433.10	gi|390938713|ref|YP_006402451.1|	-	0.012	15.1	0.0	0.019	14.4	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_16	PF13191.6	gi|390938713|ref|YP_006402451.1|	-	0.013	15.9	0.0	0.028	14.8	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|390938713|ref|YP_006402451.1|	-	0.032	13.9	0.2	0.046	13.4	0.1	1.6	2	1	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|390938713|ref|YP_006402451.1|	-	0.039	14.1	0.0	0.084	13.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
KAP_NTPase	PF07693.14	gi|390938713|ref|YP_006402451.1|	-	0.061	12.6	0.0	0.061	12.6	0.0	1.1	1	0	0	1	1	1	0	KAP	family	P-loop	domain
RsgA_GTPase	PF03193.16	gi|390938713|ref|YP_006402451.1|	-	0.086	12.7	0.0	0.15	11.9	0.0	1.4	1	1	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|390938713|ref|YP_006402451.1|	-	0.087	12.6	0.0	0.24	11.2	0.0	1.8	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.22	gi|390938713|ref|YP_006402451.1|	-	0.098	11.8	0.0	0.53	9.4	0.0	2.1	3	0	0	3	3	3	0	NB-ARC	domain
AAA_14	PF13173.6	gi|390938713|ref|YP_006402451.1|	-	0.12	12.4	0.0	0.45	10.6	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Roc	PF08477.13	gi|390938713|ref|YP_006402451.1|	-	0.15	12.2	0.0	0.26	11.5	0.0	1.4	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
TrwB_AAD_bind	PF10412.9	gi|390938713|ref|YP_006402451.1|	-	0.16	10.8	0.0	0.31	9.9	0.0	1.4	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TRM	PF02005.16	gi|390938714|ref|YP_006402452.1|	-	8.3e-75	252.3	0.0	9.9e-75	252.0	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Met_10	PF02475.16	gi|390938714|ref|YP_006402452.1|	-	0.00066	19.5	0.0	0.001	18.8	0.0	1.3	1	0	0	1	1	1	1	Met-10+	like-protein
Cons_hypoth95	PF03602.15	gi|390938714|ref|YP_006402452.1|	-	0.0069	16.0	0.0	0.011	15.3	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
PrmA	PF06325.13	gi|390938714|ref|YP_006402452.1|	-	0.081	12.3	0.0	0.12	11.7	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Ubiquitin_3	PF14836.6	gi|390938714|ref|YP_006402452.1|	-	0.091	12.8	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	Ubiquitin-like	domain
DUF167	PF02594.16	gi|390938715|ref|YP_006402453.1|	-	2e-15	56.6	0.0	2.7e-15	56.2	0.0	1.2	1	0	0	1	1	1	1	Uncharacterised	ACR,	YggU	family	COG1872
KH_7	PF17214.3	gi|390938715|ref|YP_006402453.1|	-	0.034	14.1	0.4	0.17	11.8	0.1	2.1	2	0	0	2	2	2	0	KH	domain
DUF1106	PF06523.11	gi|390938715|ref|YP_006402453.1|	-	0.052	13.6	0.0	0.099	12.7	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1106)
Zn-ribbon_8	PF09723.10	gi|390938716|ref|YP_006402454.1|	-	0.0003	20.8	0.8	0.00055	20.0	0.8	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|390938716|ref|YP_006402454.1|	-	0.0074	16.3	0.9	0.0097	15.9	0.9	1.4	1	1	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
HTH_5	PF01022.20	gi|390938716|ref|YP_006402454.1|	-	0.012	15.4	0.1	0.028	14.3	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
zf-C2HC5	PF06221.13	gi|390938716|ref|YP_006402454.1|	-	0.042	13.8	0.0	0.062	13.3	0.0	1.2	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
TFIIE_beta	PF02186.15	gi|390938716|ref|YP_006402454.1|	-	0.06	13.6	0.1	0.082	13.2	0.1	1.2	1	0	0	1	1	1	0	TFIIE	beta	subunit	core	domain
OrfB_Zn_ribbon	PF07282.11	gi|390938716|ref|YP_006402454.1|	-	0.062	13.2	1.8	0.1	12.6	1.8	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF1451	PF07295.11	gi|390938716|ref|YP_006402454.1|	-	0.097	12.7	0.5	0.19	11.8	0.4	1.4	1	1	0	1	1	1	0	Zinc-ribbon	containing	domain
DUF4777	PF16007.5	gi|390938716|ref|YP_006402454.1|	-	0.11	12.7	0.1	0.23	11.7	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4777)
zinc_ribbon_5	PF13719.6	gi|390938716|ref|YP_006402454.1|	-	0.14	11.9	0.9	5	7.0	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|390938716|ref|YP_006402454.1|	-	0.17	12.0	6.2	0.23	11.6	0.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
TBPIP	PF07106.13	gi|390938716|ref|YP_006402454.1|	-	0.19	11.7	0.0	0.25	11.3	0.0	1.2	1	0	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
zinc_ribbon_4	PF13717.6	gi|390938716|ref|YP_006402454.1|	-	0.21	11.5	4.8	3.5	7.6	0.7	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF3039	PF11238.8	gi|390938716|ref|YP_006402454.1|	-	0.4	10.5	3.1	0.71	9.7	3.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3039)
Rubredoxin_2	PF18073.1	gi|390938716|ref|YP_006402454.1|	-	0.52	10.1	4.6	3	7.7	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
PhnA_Zn_Ribbon	PF08274.12	gi|390938716|ref|YP_006402454.1|	-	0.6	10.1	3.1	0.8	9.7	0.2	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.6	gi|390938716|ref|YP_006402454.1|	-	0.61	9.6	3.1	9.2	5.8	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
HAD	PF12710.7	gi|390938717|ref|YP_006402455.1|	-	6.2e-15	56.1	0.0	7.7e-15	55.8	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|390938717|ref|YP_006402455.1|	-	1.5e-11	45.0	0.0	2.3e-09	37.9	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|390938717|ref|YP_006402455.1|	-	2.7e-09	37.4	0.0	2.1e-08	34.4	0.0	2.0	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|390938717|ref|YP_006402455.1|	-	1.3e-06	28.4	0.0	5.1e-05	23.1	0.0	2.6	2	1	1	3	3	3	1	haloacid	dehalogenase-like	hydrolase
Parvo_NS1	PF01057.17	gi|390938717|ref|YP_006402455.1|	-	0.059	12.4	0.0	0.077	12.1	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
Hydrolase_6	PF13344.6	gi|390938717|ref|YP_006402455.1|	-	0.069	13.3	0.2	0.73	10.0	0.1	2.2	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
Amidase02_C	PF12123.8	gi|390938718|ref|YP_006402456.1|	-	0.11	12.2	0.0	0.21	11.3	0.0	1.4	1	0	0	1	1	1	0	N-acetylmuramoyl-l-alanine	amidase
DUF357	PF04010.13	gi|390938718|ref|YP_006402456.1|	-	0.13	12.4	0.0	0.44	10.6	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF357)
Radical_SAM	PF04055.21	gi|390938719|ref|YP_006402457.1|	-	4.7e-08	33.6	4.1	5.8e-06	26.8	1.8	3.6	1	1	2	3	3	3	1	Radical	SAM	superfamily
DUF1848	PF08902.11	gi|390938719|ref|YP_006402457.1|	-	0.024	14.4	0.4	2.3	7.9	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1848)
UPF0102	PF02021.17	gi|390938720|ref|YP_006402458.1|	-	0.00058	20.0	0.2	0.0013	18.9	0.2	1.6	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0102
MlaD	PF02470.20	gi|390938720|ref|YP_006402458.1|	-	0.0023	18.2	0.4	0.0029	17.9	0.4	1.6	1	1	0	1	1	1	1	MlaD	protein
tRNA-synt_1e	PF01406.19	gi|390938721|ref|YP_006402459.1|	-	2.2e-120	401.6	0.0	2.8e-120	401.2	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.11	gi|390938721|ref|YP_006402459.1|	-	3.3e-11	42.6	1.2	4.3e-08	32.3	0.5	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
DALR_2	PF09190.11	gi|390938721|ref|YP_006402459.1|	-	6.8e-08	32.9	0.1	1.7e-07	31.6	0.1	1.6	1	0	0	1	1	1	1	DALR	domain
tRNA-synt_1	PF00133.22	gi|390938721|ref|YP_006402459.1|	-	2.7e-06	26.0	0.3	4.1e-05	22.0	0.0	2.0	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1c	PF00749.21	gi|390938721|ref|YP_006402459.1|	-	0.062	12.2	0.2	0.23	10.3	0.2	2.0	2	1	0	2	2	2	0	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
PNP_UDP_1	PF01048.20	gi|390938722|ref|YP_006402460.1|	-	7e-43	146.6	0.7	9.2e-43	146.2	0.7	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Adenosine_kin	PF04008.14	gi|390938724|ref|YP_006402462.1|	-	1.1e-74	249.4	0.2	1.3e-74	249.2	0.2	1.0	1	0	0	1	1	1	1	Adenosine	specific	kinase
TRAM	PF01938.20	gi|390938726|ref|YP_006402464.1|	-	5.9e-05	23.0	0.4	9e-05	22.4	0.4	1.2	1	0	0	1	1	1	1	TRAM	domain
CSD2	PF17876.1	gi|390938726|ref|YP_006402464.1|	-	0.00051	20.2	0.2	0.0099	16.0	0.0	2.1	1	1	1	2	2	2	1	Cold	shock	domain
DUF1652	PF07865.11	gi|390938727|ref|YP_006402465.1|	-	0.0043	16.8	0.1	0.0058	16.4	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1652)
Chordopox_A20R	PF05941.13	gi|390938727|ref|YP_006402465.1|	-	0.053	12.5	0.3	0.055	12.4	0.3	1.0	1	0	0	1	1	1	0	Chordopoxvirus	A20R	protein
MarR_2	PF12802.7	gi|390938730|ref|YP_006402468.1|	-	2e-07	30.8	0.4	6.5e-07	29.1	0.3	1.9	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|390938730|ref|YP_006402468.1|	-	6.1e-07	29.2	0.7	1.3e-06	28.2	0.6	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|390938730|ref|YP_006402468.1|	-	1.6e-06	27.6	0.2	3.9e-06	26.3	0.1	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|390938730|ref|YP_006402468.1|	-	8.3e-06	25.5	0.2	2.9e-05	23.7	0.1	2.0	2	0	0	2	2	1	1	Homeodomain-like	domain
HTH_11	PF08279.12	gi|390938730|ref|YP_006402468.1|	-	8.3e-06	25.7	0.2	1.7e-05	24.7	0.2	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.6	gi|390938730|ref|YP_006402468.1|	-	5.2e-05	23.2	0.0	0.00013	21.9	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
Fe_dep_repress	PF01325.19	gi|390938730|ref|YP_006402468.1|	-	6.3e-05	23.1	0.1	0.00011	22.4	0.1	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_20	PF12840.7	gi|390938730|ref|YP_006402468.1|	-	9e-05	22.5	0.1	0.00024	21.1	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|390938730|ref|YP_006402468.1|	-	9.1e-05	22.1	0.1	0.00065	19.4	0.1	2.1	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MarR	PF01047.22	gi|390938730|ref|YP_006402468.1|	-	0.00013	21.9	0.1	0.0002	21.2	0.1	1.3	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|390938730|ref|YP_006402468.1|	-	0.00021	20.8	0.2	0.00078	19.1	0.2	1.9	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|390938730|ref|YP_006402468.1|	-	0.00027	20.7	0.0	0.00055	19.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|390938730|ref|YP_006402468.1|	-	0.00034	20.5	0.2	0.001	19.0	0.2	1.8	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.15	gi|390938730|ref|YP_006402468.1|	-	0.00086	18.9	0.2	0.0024	17.5	0.2	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_Tnp_1	PF01527.20	gi|390938730|ref|YP_006402468.1|	-	0.0011	19.3	0.3	0.0025	18.1	0.0	1.7	2	0	0	2	2	1	1	Transposase
TFIIE_alpha	PF02002.17	gi|390938730|ref|YP_006402468.1|	-	0.0014	18.5	0.1	0.003	17.4	0.0	1.5	2	0	0	2	2	1	1	TFIIE	alpha	subunit
Rrf2	PF02082.20	gi|390938730|ref|YP_006402468.1|	-	0.0015	18.9	0.2	0.0031	17.8	0.2	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
PaaX	PF07848.12	gi|390938730|ref|YP_006402468.1|	-	0.0021	18.2	0.2	0.0083	16.3	0.1	1.9	2	0	0	2	2	2	1	PaaX-like	protein
HTH_28	PF13518.6	gi|390938730|ref|YP_006402468.1|	-	0.0022	18.1	0.0	0.005	16.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3489	PF11994.8	gi|390938730|ref|YP_006402468.1|	-	0.0024	17.9	0.1	0.0043	17.1	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3489)
GerE	PF00196.19	gi|390938730|ref|YP_006402468.1|	-	0.0028	17.1	0.1	0.0044	16.5	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Penicillinase_R	PF03965.16	gi|390938730|ref|YP_006402468.1|	-	0.0043	17.4	0.1	0.0066	16.8	0.1	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_Tnp_ISL3	PF13542.6	gi|390938730|ref|YP_006402468.1|	-	0.0044	16.4	0.0	0.024	14.0	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
Sigma70_r4_2	PF08281.12	gi|390938730|ref|YP_006402468.1|	-	0.0063	16.2	0.1	0.013	15.2	0.1	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|390938730|ref|YP_006402468.1|	-	0.0075	15.8	0.6	0.018	14.5	0.6	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_36	PF13730.6	gi|390938730|ref|YP_006402468.1|	-	0.0082	16.1	0.1	0.017	15.1	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
IF2_N	PF04760.15	gi|390938730|ref|YP_006402468.1|	-	0.0094	15.8	0.7	0.063	13.1	0.1	2.1	2	0	0	2	2	2	1	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_17	PF12728.7	gi|390938730|ref|YP_006402468.1|	-	0.0097	16.1	0.3	0.039	14.1	0.3	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|390938730|ref|YP_006402468.1|	-	0.012	15.5	0.4	0.047	13.5	0.2	2.3	2	1	1	3	3	2	0	AsnC-type	helix-turn-helix	domain
HTH_35	PF13693.6	gi|390938730|ref|YP_006402468.1|	-	0.028	14.4	0.1	0.052	13.6	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_Tc3_2	PF01498.18	gi|390938730|ref|YP_006402468.1|	-	0.032	14.5	0.1	0.055	13.7	0.1	1.4	1	0	0	1	1	1	0	Transposase
SMC_ScpB	PF04079.16	gi|390938730|ref|YP_006402468.1|	-	0.054	13.1	0.1	0.09	12.4	0.1	1.3	1	0	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_IclR	PF09339.10	gi|390938730|ref|YP_006402468.1|	-	0.062	13.1	0.1	0.14	12.0	0.1	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_38	PF13936.6	gi|390938730|ref|YP_006402468.1|	-	0.062	13.1	0.1	0.36	10.6	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_8	PF02954.19	gi|390938730|ref|YP_006402468.1|	-	0.066	13.0	0.4	0.12	12.2	0.4	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
RPA_C	PF08784.11	gi|390938730|ref|YP_006402468.1|	-	0.069	13.8	0.0	0.11	13.1	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
LexA_DNA_bind	PF01726.16	gi|390938730|ref|YP_006402468.1|	-	0.07	12.9	0.1	0.17	11.7	0.1	1.6	1	0	0	1	1	1	0	LexA	DNA	binding	domain
B-block_TFIIIC	PF04182.12	gi|390938730|ref|YP_006402468.1|	-	0.1	12.8	0.0	0.16	12.1	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
DUF977	PF06163.11	gi|390938730|ref|YP_006402468.1|	-	0.11	12.4	0.1	0.19	11.7	0.1	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
DUF4423	PF14394.6	gi|390938730|ref|YP_006402468.1|	-	0.16	11.7	0.0	0.25	11.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_Mga	PF08280.11	gi|390938730|ref|YP_006402468.1|	-	0.16	12.0	0.0	0.29	11.2	0.0	1.4	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Csa1	PF06023.12	gi|390938731|ref|YP_006402469.1|	-	2.7e-70	237.1	0.0	3.2e-70	236.8	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	exonuclease	Csa1
Cas_Cas4	PF01930.17	gi|390938731|ref|YP_006402469.1|	-	6.8e-06	26.3	0.0	0.014	15.6	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	DUF83
DUF3601	PF12208.8	gi|390938731|ref|YP_006402469.1|	-	0.12	12.5	0.2	0.21	11.7	0.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3601)
Cas_Cas1	PF01867.16	gi|390938732|ref|YP_006402470.1|	-	4.9e-61	206.3	0.0	6.7e-61	205.9	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Rop-like	PF05082.13	gi|390938732|ref|YP_006402470.1|	-	0.043	13.6	0.7	0.098	12.5	0.7	1.6	1	0	0	1	1	1	0	Rop-like
CRISPR_Cas2	PF09827.9	gi|390938733|ref|YP_006402471.1|	-	1.2e-13	51.0	0.0	1.4e-13	50.8	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas4	PF01930.17	gi|390938734|ref|YP_006402472.1|	-	1.7e-12	47.7	0.0	2.1e-12	47.5	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|390938734|ref|YP_006402472.1|	-	0.025	14.5	0.0	0.034	14.0	0.0	1.3	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
HTH_20	PF12840.7	gi|390938735|ref|YP_006402473.1|	-	2.8e-05	24.1	0.0	6.6e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|390938735|ref|YP_006402473.1|	-	0.00019	21.3	0.2	0.00052	19.9	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HxlR	PF01638.17	gi|390938735|ref|YP_006402473.1|	-	0.0046	16.8	0.0	0.01	15.7	0.0	1.6	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_IclR	PF09339.10	gi|390938735|ref|YP_006402473.1|	-	0.038	13.8	0.0	0.068	13.0	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|390938735|ref|YP_006402473.1|	-	0.049	13.6	0.2	0.21	11.5	0.1	2.1	1	1	1	2	2	2	0	MarR	family
FUR	PF01475.19	gi|390938735|ref|YP_006402473.1|	-	0.052	13.7	0.0	0.56	10.4	0.0	2.2	2	0	0	2	2	2	0	Ferric	uptake	regulator	family
DUF2250	PF10007.9	gi|390938735|ref|YP_006402473.1|	-	0.12	12.5	0.0	0.21	11.7	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
RPN6_C_helix	PF18503.1	gi|390938736|ref|YP_006402474.1|	-	0.058	13.1	0.4	0.86	9.4	0.1	2.6	3	0	0	3	3	3	0	26S	proteasome	subunit	RPN6	C-terminal	helix	domain
LepB_N	PF18640.1	gi|390938736|ref|YP_006402474.1|	-	0.077	12.6	0.1	0.092	12.3	0.1	1.1	1	0	0	1	1	1	0	LepB	N-terminal	domain
Nbl1_Borealin_N	PF10444.9	gi|390938736|ref|YP_006402474.1|	-	0.1	12.3	0.1	0.22	11.2	0.0	1.5	2	0	0	2	2	2	0	Nbl1	/	Borealin	N	terminal
Band_3_cyto	PF07565.13	gi|390938736|ref|YP_006402474.1|	-	0.13	12.0	0.0	0.16	11.8	0.0	1.2	1	0	0	1	1	1	0	Band	3	cytoplasmic	domain
DevR	PF01905.16	gi|390938737|ref|YP_006402475.1|	-	7.3e-65	218.7	0.0	9.5e-65	218.3	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
Cas_Cas5d	PF09704.10	gi|390938738|ref|YP_006402476.1|	-	0.0019	18.1	0.1	0.004	17.1	0.0	1.5	2	0	0	2	2	2	1	CRISPR-associated	protein	(Cas_Cas5)
DUF2089	PF09862.9	gi|390938739|ref|YP_006402477.1|	-	0.092	12.8	0.0	3.7	7.6	0.0	2.9	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF2089)
Helicase_C	PF00271.31	gi|390938740|ref|YP_006402478.1|	-	2.1e-09	37.7	0.0	4.4e-09	36.7	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|390938740|ref|YP_006402478.1|	-	1e-08	35.1	0.0	7.9e-08	32.3	0.0	2.4	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|390938740|ref|YP_006402478.1|	-	2.4e-08	34.2	0.0	4.9e-08	33.2	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_25	PF13481.6	gi|390938740|ref|YP_006402478.1|	-	0.0083	15.7	0.0	0.038	13.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|390938740|ref|YP_006402478.1|	-	0.11	12.8	0.0	0.77	10.0	0.0	2.3	1	1	0	1	1	1	0	AAA	domain
HD	PF01966.22	gi|390938741|ref|YP_006402479.1|	-	1.5e-05	25.2	0.1	2.8e-05	24.4	0.1	1.4	1	0	0	1	1	1	1	HD	domain
HD_6	PF18019.1	gi|390938741|ref|YP_006402479.1|	-	0.00029	21.0	0.0	0.0013	18.9	0.0	1.9	1	1	0	1	1	1	1	HD	domain
CRISPR_Cas6	PF10040.9	gi|390938742|ref|YP_006402480.1|	-	1.3e-09	38.6	0.2	2.3e-09	37.8	0.2	1.4	1	0	0	1	1	1	1	CRISPR-associated	endoribonuclease	Cas6
Atg14	PF10186.9	gi|390938744|ref|YP_006402482.1|	-	0.0002	20.6	2.6	0.0002	20.6	2.6	1.4	1	1	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
RHH_1	PF01402.21	gi|390938744|ref|YP_006402482.1|	-	0.0006	19.7	0.4	0.0006	19.7	0.4	4.9	4	2	0	4	4	4	1	Ribbon-helix-helix	protein,	copG	family
Baculo_PEP_C	PF04513.12	gi|390938744|ref|YP_006402482.1|	-	0.0014	18.7	0.2	0.38	10.8	0.0	2.7	2	1	0	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ApoLp-III	PF07464.11	gi|390938744|ref|YP_006402482.1|	-	0.0023	18.1	2.7	0.007	16.5	1.4	2.3	2	1	0	2	2	2	1	Apolipophorin-III	precursor	(apoLp-III)
Phasin_2	PF09361.10	gi|390938744|ref|YP_006402482.1|	-	0.0037	17.5	1.0	3.5	7.9	0.5	3.5	2	1	1	3	3	3	1	Phasin	protein
DUF496	PF04363.12	gi|390938744|ref|YP_006402482.1|	-	0.0092	16.0	1.9	0.038	14.0	0.3	2.7	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF496)
SWI-SNF_Ssr4	PF08549.10	gi|390938744|ref|YP_006402482.1|	-	0.022	13.4	5.5	0.022	13.4	5.5	1.1	1	0	0	1	1	1	0	Fungal	domain	of	unknown	function	(DUF1750)
Senescence	PF06911.12	gi|390938744|ref|YP_006402482.1|	-	0.029	14.7	2.5	1.4	9.2	1.2	2.9	2	1	1	3	3	3	0	Senescence-associated	protein
DUF948	PF06103.11	gi|390938744|ref|YP_006402482.1|	-	0.03	14.6	2.5	5.6	7.3	0.3	3.1	3	1	0	3	3	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Apolipoprotein	PF01442.18	gi|390938744|ref|YP_006402482.1|	-	0.042	13.7	15.9	0.044	13.7	12.6	2.5	2	1	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
HAMP	PF00672.25	gi|390938744|ref|YP_006402482.1|	-	0.043	14.2	0.9	0.58	10.6	0.1	3.1	3	1	1	4	4	4	0	HAMP	domain
COG2	PF06148.11	gi|390938744|ref|YP_006402482.1|	-	0.08	13.0	10.0	0.47	10.5	1.5	4.0	2	1	2	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Enkurin	PF13864.6	gi|390938744|ref|YP_006402482.1|	-	0.1	13.1	5.4	5.7	7.4	0.9	3.3	2	1	2	4	4	4	0	Calmodulin-binding
Acyl-CoA_dh_C	PF12806.7	gi|390938744|ref|YP_006402482.1|	-	0.29	11.3	4.4	6.6	6.9	0.0	3.3	2	1	2	4	4	4	0	Acetyl-CoA	dehydrogenase	C-terminal	like
DUF677	PF05055.12	gi|390938744|ref|YP_006402482.1|	-	0.47	9.3	10.6	0.17	10.8	3.3	2.8	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF677)
Trigger_N	PF05697.13	gi|390938744|ref|YP_006402482.1|	-	0.83	10.0	6.4	4.5	7.6	6.4	2.2	1	1	0	1	1	1	0	Bacterial	trigger	factor	protein	(TF)
PhoU	PF01895.19	gi|390938744|ref|YP_006402482.1|	-	0.89	10.1	12.2	0.38	11.2	2.6	3.8	2	2	1	3	3	3	0	PhoU	domain
Spc7	PF08317.11	gi|390938744|ref|YP_006402482.1|	-	1	8.2	8.7	0.29	10.0	3.4	2.0	1	1	2	3	3	3	0	Spc7	kinetochore	protein
DUF883	PF05957.13	gi|390938744|ref|YP_006402482.1|	-	1.1	9.9	12.9	1.8	9.2	1.7	3.6	2	1	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF883)
ISG65-75	PF11727.8	gi|390938744|ref|YP_006402482.1|	-	1.3	8.2	8.6	3	7.0	2.2	2.8	1	1	1	3	3	3	0	Invariant	surface	glycoprotein
Dak2	PF02734.17	gi|390938744|ref|YP_006402482.1|	-	1.9	8.3	4.8	9.9	6.0	0.2	2.6	1	1	1	2	2	2	0	DAK2	domain
ATPase_2	PF01637.18	gi|390938745|ref|YP_006402483.1|	-	4.8e-17	62.6	0.0	1.2e-16	61.4	0.0	1.7	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|390938745|ref|YP_006402483.1|	-	5e-12	46.0	0.0	8.7e-10	38.7	0.0	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|390938745|ref|YP_006402483.1|	-	2.4e-09	37.6	0.0	6.2e-09	36.2	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|390938745|ref|YP_006402483.1|	-	6.3e-08	33.2	0.0	1.9e-07	31.7	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|390938745|ref|YP_006402483.1|	-	0.0013	19.2	0.0	0.0036	17.7	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Hydrolase	PF00702.26	gi|390938747|ref|YP_006402485.1|	-	4.2e-06	27.2	0.0	0.00016	22.0	0.0	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|390938747|ref|YP_006402485.1|	-	0.00038	20.9	0.1	0.25	11.7	0.0	2.4	2	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|390938747|ref|YP_006402485.1|	-	0.0011	19.1	0.0	0.38	10.8	0.0	2.9	3	0	0	3	3	3	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|390938747|ref|YP_006402485.1|	-	0.0062	16.3	0.0	0.016	15.0	0.0	1.6	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Trehalose_PPase	PF02358.16	gi|390938747|ref|YP_006402485.1|	-	0.026	13.7	0.0	0.042	13.0	0.0	1.3	1	0	0	1	1	1	0	Trehalose-phosphatase
Glycos_transf_1	PF00534.20	gi|390938749|ref|YP_006402487.1|	-	3.5e-25	88.5	0.0	1.3e-24	86.7	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|390938749|ref|YP_006402487.1|	-	6.1e-16	59.1	0.0	1.3e-14	54.8	0.1	2.6	3	0	0	3	3	3	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|390938749|ref|YP_006402487.1|	-	9.1e-06	26.0	0.0	1.8e-05	25.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|390938749|ref|YP_006402487.1|	-	0.0056	16.7	0.1	0.015	15.3	0.1	1.8	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|390938749|ref|YP_006402487.1|	-	0.043	14.3	0.0	0.092	13.2	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
DUF4064	PF13273.6	gi|390938751|ref|YP_006402489.1|	-	0.02	15.2	13.2	0.028	14.7	5.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
BaxI_1	PF12811.7	gi|390938751|ref|YP_006402489.1|	-	0.021	14.4	8.5	0.34	10.4	8.5	2.0	1	1	0	1	1	1	0	Bax	inhibitor	1	like
Got1	PF04178.12	gi|390938751|ref|YP_006402489.1|	-	0.14	12.6	7.8	0.038	14.4	4.4	1.8	1	1	1	2	2	2	0	Got1/Sft2-like	family
Bunya_G1	PF03557.15	gi|390938751|ref|YP_006402489.1|	-	0.18	9.7	0.4	0.19	9.6	0.4	1.0	1	0	0	1	1	1	0	Bunyavirus	glycoprotein	G1
YrhC	PF14143.6	gi|390938751|ref|YP_006402489.1|	-	2.5	8.2	6.0	1.2	9.2	0.2	2.4	2	1	1	3	3	3	0	YrhC-like	protein
TFIIB	PF00382.19	gi|390938753|ref|YP_006402491.1|	-	6e-17	61.5	0.0	4.9e-10	39.3	0.0	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|390938753|ref|YP_006402491.1|	-	1.2e-12	47.2	0.8	2.4e-12	46.2	0.8	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Ribosomal_S27e	PF01667.17	gi|390938753|ref|YP_006402491.1|	-	0.00034	20.3	0.6	0.00054	19.6	0.6	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S27
zf-RRN7	PF11781.8	gi|390938753|ref|YP_006402491.1|	-	0.0074	15.9	0.2	0.012	15.3	0.2	1.3	1	0	0	1	1	1	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Lar_restr_allev	PF14354.6	gi|390938753|ref|YP_006402491.1|	-	0.028	14.8	0.3	0.055	13.9	0.3	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Glyco_hydro_20b	PF02838.15	gi|390938753|ref|YP_006402491.1|	-	0.046	14.5	0.6	2.1	9.2	0.6	2.3	1	1	0	1	1	1	0	Glycosyl	hydrolase	family	20,	domain	2
Zn_Tnp_IS1595	PF12760.7	gi|390938753|ref|YP_006402491.1|	-	0.059	13.4	0.4	0.11	12.5	0.4	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|390938753|ref|YP_006402491.1|	-	0.065	13.2	2.0	0.12	12.4	2.0	1.4	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
Zn_ribbon_SprT	PF17283.2	gi|390938753|ref|YP_006402491.1|	-	0.074	13.0	0.2	0.14	12.1	0.2	1.4	1	0	0	1	1	1	0	SprT-like	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|390938753|ref|YP_006402491.1|	-	0.11	12.4	0.2	0.25	11.3	0.2	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
PADR1	PF08063.12	gi|390938753|ref|YP_006402491.1|	-	0.22	11.3	2.1	0.38	10.6	2.1	1.4	1	0	0	1	1	1	0	PADR1	(NUC008)	domain
A2L_zn_ribbon	PF08792.10	gi|390938753|ref|YP_006402491.1|	-	0.34	10.7	2.0	0.66	9.8	2.0	1.5	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|390938753|ref|YP_006402491.1|	-	0.48	10.6	2.3	20	5.4	0.3	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|390938753|ref|YP_006402491.1|	-	0.72	9.6	4.0	15	5.5	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc_ribbon_2	PF13240.6	gi|390938753|ref|YP_006402491.1|	-	0.77	9.6	3.1	2.6	7.9	0.8	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-Mss51	PF13824.6	gi|390938753|ref|YP_006402491.1|	-	3	8.0	4.4	0.9	9.7	1.1	1.9	2	0	0	2	2	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ribbon_3	PF13248.6	gi|390938753|ref|YP_006402491.1|	-	6.9	6.2	6.6	47	3.6	6.6	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
Antimicrobial19	PF08225.11	gi|390938753|ref|YP_006402491.1|	-	10	5.9	6.0	1.3	8.7	0.1	2.5	3	0	0	3	3	3	0	Pseudin	antimicrobial	peptide
Gar1	PF04410.14	gi|390938754|ref|YP_006402492.1|	-	2.8e-08	33.7	0.0	3e-08	33.6	0.0	1.1	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
PRC	PF05239.16	gi|390938754|ref|YP_006402492.1|	-	0.0031	17.6	0.9	0.0043	17.1	0.6	1.5	1	1	0	1	1	1	1	PRC-barrel	domain
CSD2	PF17876.1	gi|390938754|ref|YP_006402492.1|	-	0.13	12.5	0.0	0.19	11.9	0.0	1.3	1	0	0	1	1	1	0	Cold	shock	domain
SRP19	PF01922.17	gi|390938756|ref|YP_006402494.1|	-	9.1e-22	77.8	0.2	1.4e-21	77.2	0.2	1.3	1	0	0	1	1	1	1	SRP19	protein
Ribosomal_S8e	PF01201.22	gi|390938757|ref|YP_006402495.1|	-	1.6e-27	96.3	0.1	2e-27	96.0	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8e
Prenyltransf	PF01255.19	gi|390938758|ref|YP_006402496.1|	-	6.3e-75	251.5	0.0	7.5e-75	251.3	0.0	1.0	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
ALC	PF17527.2	gi|390938758|ref|YP_006402496.1|	-	0.14	11.7	0.1	0.21	11.2	0.1	1.2	1	0	0	1	1	1	0	Phage	ALC	protein
DUF3584	PF12128.8	gi|390938759|ref|YP_006402497.1|	-	6.7e-08	30.6	37.3	7.8e-08	30.4	37.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
DUF948	PF06103.11	gi|390938759|ref|YP_006402497.1|	-	8.4e-07	29.2	12.3	3.3e-05	24.1	1.0	4.0	2	1	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
EzrA	PF06160.12	gi|390938759|ref|YP_006402497.1|	-	4.2e-05	21.9	40.3	0.0023	16.2	12.8	2.3	1	1	1	2	2	2	2	Septation	ring	formation	regulator,	EzrA
HOOK	PF05622.12	gi|390938759|ref|YP_006402497.1|	-	0.00011	20.5	45.0	0.00015	20.1	45.0	1.1	1	0	0	1	1	1	1	HOOK	protein
CENP-F_leu_zip	PF10473.9	gi|390938759|ref|YP_006402497.1|	-	0.00034	20.6	58.0	0.055	13.5	4.4	4.2	1	1	3	4	4	4	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Fez1	PF06818.15	gi|390938759|ref|YP_006402497.1|	-	0.00051	20.5	9.5	0.00051	20.5	9.5	3.0	1	1	2	3	3	3	1	Fez1
GAS	PF13851.6	gi|390938759|ref|YP_006402497.1|	-	0.00066	19.1	51.5	0.28	10.5	5.4	3.4	1	1	2	3	3	3	2	Growth-arrest	specific	micro-tubule	binding
Baculo_PEP_C	PF04513.12	gi|390938759|ref|YP_006402497.1|	-	0.00067	19.7	16.4	0.0031	17.6	4.6	3.1	1	1	1	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
TPR_MLP1_2	PF07926.12	gi|390938759|ref|YP_006402497.1|	-	0.0011	19.1	42.4	0.082	13.0	2.7	4.2	1	1	2	3	3	3	2	TPR/MLP1/MLP2-like	protein
DUF4763	PF15960.5	gi|390938759|ref|YP_006402497.1|	-	0.0013	18.1	2.4	0.0013	18.1	2.4	3.3	1	1	1	3	3	3	2	Domain	of	unknown	function	(DUF4763)
BRE1	PF08647.11	gi|390938759|ref|YP_006402497.1|	-	0.0015	18.6	8.1	0.0015	18.6	8.1	4.9	2	2	3	5	5	5	1	BRE1	E3	ubiquitin	ligase
Occludin_ELL	PF07303.13	gi|390938759|ref|YP_006402497.1|	-	0.0018	18.9	2.1	0.0018	18.9	2.1	3.8	1	1	3	4	4	4	1	Occludin	homology	domain
Spc7	PF08317.11	gi|390938759|ref|YP_006402497.1|	-	0.0032	16.4	50.1	0.021	13.7	14.1	3.4	1	1	3	4	4	4	2	Spc7	kinetochore	protein
COG6	PF06419.11	gi|390938759|ref|YP_006402497.1|	-	0.0052	15.1	7.4	0.0052	15.1	7.4	3.1	2	1	1	3	3	3	2	Conserved	oligomeric	complex	COG6
FmiP_Thoc5	PF09766.9	gi|390938759|ref|YP_006402497.1|	-	0.0054	16.1	8.2	0.0054	16.1	8.2	3.8	1	1	2	3	3	2	1	Fms-interacting	protein/Thoc5
Filament	PF00038.21	gi|390938759|ref|YP_006402497.1|	-	0.0063	16.1	15.5	0.0063	16.1	15.5	2.9	1	1	2	3	3	2	2	Intermediate	filament	protein
Seryl_tRNA_N	PF02403.22	gi|390938759|ref|YP_006402497.1|	-	0.0067	16.6	48.2	0.0084	16.3	5.2	4.9	2	2	2	4	4	4	2	Seryl-tRNA	synthetase	N-terminal	domain
Med4	PF10018.9	gi|390938759|ref|YP_006402497.1|	-	0.0074	16.0	5.1	0.0074	16.0	5.1	3.9	2	2	1	3	3	2	1	Vitamin-D-receptor	interacting	Mediator	subunit	4
LPP	PF04728.13	gi|390938759|ref|YP_006402497.1|	-	0.0074	16.6	17.2	0.27	11.7	0.1	5.5	3	2	2	5	5	4	1	Lipoprotein	leucine-zipper
Laminin_I	PF06008.14	gi|390938759|ref|YP_006402497.1|	-	0.0079	15.9	4.2	0.0079	15.9	4.2	3.4	1	1	2	3	3	3	1	Laminin	Domain	I
APG6_N	PF17675.1	gi|390938759|ref|YP_006402497.1|	-	0.01	16.4	48.6	0.51	10.9	16.1	3.6	1	1	1	2	2	2	0	Apg6	coiled-coil	region
Spectrin	PF00435.21	gi|390938759|ref|YP_006402497.1|	-	0.012	16.1	28.7	0.2	12.2	1.4	3.7	1	1	2	3	3	3	0	Spectrin	repeat
ATG16	PF08614.11	gi|390938759|ref|YP_006402497.1|	-	0.013	15.7	43.9	0.052	13.8	12.3	3.0	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
NPV_P10	PF05531.12	gi|390938759|ref|YP_006402497.1|	-	0.022	15.2	19.4	4.7	7.8	2.1	4.4	1	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF4407	PF14362.6	gi|390938759|ref|YP_006402497.1|	-	0.028	13.8	24.6	2.4	7.5	4.7	3.1	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4407)
IFT57	PF10498.9	gi|390938759|ref|YP_006402497.1|	-	0.041	12.9	39.5	0.05	12.6	19.6	2.5	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
WXG100	PF06013.12	gi|390938759|ref|YP_006402497.1|	-	0.046	13.9	6.4	0.61	10.4	0.2	3.9	3	2	0	3	3	2	0	Proteins	of	100	residues	with	WXG
Sec34	PF04136.15	gi|390938759|ref|YP_006402497.1|	-	0.055	13.3	24.6	0.21	11.5	3.0	4.3	1	1	4	5	5	5	0	Sec34-like	family
AAA_13	PF13166.6	gi|390938759|ref|YP_006402497.1|	-	0.081	11.6	37.8	0.86	8.2	21.2	2.2	1	1	1	2	2	2	0	AAA	domain
FlaC_arch	PF05377.11	gi|390938759|ref|YP_006402497.1|	-	0.094	13.1	32.3	0.66	10.4	2.4	5.8	4	2	2	6	6	6	0	Flagella	accessory	protein	C	(FlaC)
Laminin_II	PF06009.12	gi|390938759|ref|YP_006402497.1|	-	0.094	12.7	35.9	0.072	13.1	6.6	3.9	1	1	3	4	4	3	0	Laminin	Domain	II
Atg14	PF10186.9	gi|390938759|ref|YP_006402497.1|	-	0.1	11.6	49.8	0.062	12.4	16.4	3.7	1	1	2	3	3	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF1664	PF07889.12	gi|390938759|ref|YP_006402497.1|	-	0.12	12.4	28.8	0.032	14.2	4.6	4.3	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF1664)
DUF5082	PF16888.5	gi|390938759|ref|YP_006402497.1|	-	0.14	12.5	44.1	2.1	8.6	11.3	5.5	1	1	3	5	5	5	0	Domain	of	unknown	function	(DUF5082)
TMF_TATA_bd	PF12325.8	gi|390938759|ref|YP_006402497.1|	-	0.17	12.1	0.3	0.17	12.1	0.3	4.8	1	1	4	5	5	5	0	TATA	element	modulatory	factor	1	TATA	binding
MbeD_MobD	PF04899.12	gi|390938759|ref|YP_006402497.1|	-	0.18	11.9	9.8	3	8.0	0.1	4.4	3	1	0	3	3	3	0	MbeD/MobD	like
HAP1_N	PF04849.13	gi|390938759|ref|YP_006402497.1|	-	0.21	10.8	47.4	0.32	10.2	8.0	3.0	1	1	2	3	3	3	0	HAP1	N-terminal	conserved	region
DUF4201	PF13870.6	gi|390938759|ref|YP_006402497.1|	-	0.22	11.2	54.6	0.32	10.7	19.4	3.4	1	1	3	4	4	3	0	Domain	of	unknown	function	(DUF4201)
UPF0242	PF06785.11	gi|390938759|ref|YP_006402497.1|	-	0.28	11.3	48.0	1.8	8.6	23.1	3.2	1	1	1	3	3	3	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Alanine_zipper	PF11839.8	gi|390938759|ref|YP_006402497.1|	-	0.3	11.5	2.7	43	4.6	0.0	3.7	4	0	0	4	4	3	0	Alanine-zipper,	major	outer	membrane	lipoprotein
FapA	PF03961.13	gi|390938759|ref|YP_006402497.1|	-	0.41	9.2	45.7	0.32	9.5	15.1	2.8	1	1	2	3	3	3	0	Flagellar	Assembly	Protein	A
ADIP	PF11559.8	gi|390938759|ref|YP_006402497.1|	-	0.45	10.6	44.0	0.53	10.4	7.7	3.9	1	1	3	4	4	3	0	Afadin-	and	alpha	-actinin-Binding
Taxilin	PF09728.9	gi|390938759|ref|YP_006402497.1|	-	0.48	9.6	48.8	0.7	9.0	48.8	1.1	1	0	0	1	1	1	0	Myosin-like	coiled-coil	protein
Golgin_A5	PF09787.9	gi|390938759|ref|YP_006402497.1|	-	0.48	9.8	48.6	4.1	6.8	15.7	3.2	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
DUF812	PF05667.11	gi|390938759|ref|YP_006402497.1|	-	0.49	9.2	53.2	1.5	7.6	25.0	3.0	1	1	1	2	2	1	0	Protein	of	unknown	function	(DUF812)
PI_PP_I	PF18363.1	gi|390938759|ref|YP_006402497.1|	-	0.49	10.6	12.1	1.8	8.8	0.8	3.9	1	1	2	4	4	4	0	Phosphoinositide	phosphatase	insertion	domain
FPP	PF05911.11	gi|390938759|ref|YP_006402497.1|	-	0.58	8.3	43.6	0.34	9.1	16.6	3.5	1	1	2	3	3	3	0	Filament-like	plant	protein,	long	coiled-coil
KASH_CCD	PF14662.6	gi|390938759|ref|YP_006402497.1|	-	0.58	10.0	54.4	0.15	11.9	16.6	3.6	1	1	2	3	3	2	0	Coiled-coil	region	of	CCDC155	or	KASH
TMPIT	PF07851.13	gi|390938759|ref|YP_006402497.1|	-	0.78	8.9	34.1	0.066	12.4	4.3	3.0	1	1	2	3	3	3	0	TMPIT-like	protein
DUF745	PF05335.13	gi|390938759|ref|YP_006402497.1|	-	0.94	9.2	26.7	2.5	7.8	2.7	3.2	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF745)
SHE3	PF17078.5	gi|390938759|ref|YP_006402497.1|	-	0.95	9.1	38.7	1.9	8.1	15.2	2.8	1	1	1	2	2	2	0	SWI5-dependent	HO	expression	protein	3
T3SSipB	PF16535.5	gi|390938759|ref|YP_006402497.1|	-	1.4	9.4	13.2	0.4	11.1	1.6	3.1	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
YabA	PF06156.13	gi|390938759|ref|YP_006402497.1|	-	1.4	9.6	43.1	0.64	10.7	0.5	5.1	1	1	4	5	5	5	0	Initiation	control	protein	YabA
Mod_r	PF07200.13	gi|390938759|ref|YP_006402497.1|	-	1.8	8.7	44.4	0.16	12.0	7.2	4.1	1	1	3	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
PRKG1_interact	PF15898.5	gi|390938759|ref|YP_006402497.1|	-	2.4	9.1	49.7	0.53	11.2	4.7	3.7	1	1	3	4	4	4	0	cGMP-dependent	protein	kinase	interacting	domain
PI3K_P85_iSH2	PF16454.5	gi|390938759|ref|YP_006402497.1|	-	2.6	7.6	41.5	2.1	7.9	13.9	4.0	1	1	2	3	3	3	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
COG2	PF06148.11	gi|390938759|ref|YP_006402497.1|	-	2.7	8.1	40.2	1.5	8.9	7.6	4.9	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
THOC7	PF05615.13	gi|390938759|ref|YP_006402497.1|	-	2.9	8.2	52.2	2.5	8.4	11.3	4.8	1	1	4	5	5	5	0	Tho	complex	subunit	7
SlyX	PF04102.12	gi|390938759|ref|YP_006402497.1|	-	3.2	8.5	33.5	0.83	10.3	0.9	6.3	1	1	5	6	6	6	0	SlyX
YscO	PF07321.12	gi|390938759|ref|YP_006402497.1|	-	3.7	7.5	39.9	0.25	11.3	0.4	3.9	1	1	1	3	3	3	0	Type	III	secretion	protein	YscO
CENP-H	PF05837.12	gi|390938759|ref|YP_006402497.1|	-	3.8	7.9	47.7	0.33	11.4	6.1	4.2	1	1	1	3	3	2	0	Centromere	protein	H	(CENP-H)
TACC_C	PF05010.14	gi|390938759|ref|YP_006402497.1|	-	3.8	7.2	41.9	0.1	12.3	9.5	3.7	1	1	3	4	4	4	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
FlgN	PF05130.12	gi|390938759|ref|YP_006402497.1|	-	4.5	7.8	40.3	0.15	12.5	10.9	3.4	1	1	3	4	4	4	0	FlgN	protein
Flagellin_N	PF00669.20	gi|390938759|ref|YP_006402497.1|	-	5.2	7.2	15.6	2.3	8.3	2.5	3.3	2	1	1	3	3	3	0	Bacterial	flagellin	N-terminal	helical	region
AIP3	PF03915.13	gi|390938759|ref|YP_006402497.1|	-	5.6	6.0	35.3	1	8.4	13.6	2.3	1	1	1	2	2	2	0	Actin	interacting	protein	3
MscS_porin	PF12795.7	gi|390938759|ref|YP_006402497.1|	-	6	6.3	40.3	1.9	8.0	12.3	2.9	1	1	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
GlcNAc-1_reg	PF18440.1	gi|390938759|ref|YP_006402497.1|	-	6.8	7.0	9.8	0.17	12.1	1.1	2.8	2	2	1	3	3	3	0	Putative	GlcNAc-1	phosphotransferase	regulatory	domain
ERM	PF00769.19	gi|390938759|ref|YP_006402497.1|	-	7.3	6.3	47.6	4.6	7.0	14.5	2.4	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
SMODS	PF18144.1	gi|390938759|ref|YP_006402497.1|	-	9.6	6.4	8.5	0.64	10.2	0.3	3.0	2	2	1	4	4	2	0	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
BST2	PF16716.5	gi|390938759|ref|YP_006402497.1|	-	9.7	6.9	35.2	12	6.5	10.1	5.1	1	1	3	4	4	4	0	Bone	marrow	stromal	antigen	2
Abi_C	PF14355.6	gi|390938759|ref|YP_006402497.1|	-	9.8	6.4	12.1	1.4	9.1	0.3	4.1	3	2	1	5	5	3	0	Abortive	infection	C-terminus
ATP-grasp_5	PF13549.6	gi|390938760|ref|YP_006402498.1|	-	1.8e-80	269.5	0.2	2.1e-80	269.4	0.2	1.0	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_2	PF08442.10	gi|390938760|ref|YP_006402498.1|	-	3.2e-06	26.9	0.3	5.2e-06	26.2	0.3	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
EBV-NA1	PF02905.14	gi|390938760|ref|YP_006402498.1|	-	0.094	12.5	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	Epstein	Barr	virus	nuclear	antigen-1,	DNA-binding	domain
Succ_CoA_lig	PF13607.6	gi|390938761|ref|YP_006402499.1|	-	1.7e-52	176.9	1.7	2.4e-51	173.2	0.3	2.8	4	0	0	4	4	4	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|390938761|ref|YP_006402499.1|	-	2e-28	99.2	0.0	2e-27	96.0	0.0	2.3	2	0	0	2	2	2	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|390938761|ref|YP_006402499.1|	-	5.2e-14	52.7	0.0	1.4e-13	51.3	0.0	1.8	1	0	0	1	1	1	1	CoA	binding	domain
GFO_IDH_MocA	PF01408.22	gi|390938761|ref|YP_006402499.1|	-	0.009	16.8	0.0	1.6	9.6	0.0	3.0	2	1	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Ferrochelatase	PF00762.19	gi|390938761|ref|YP_006402499.1|	-	0.033	13.3	0.0	0.058	12.5	0.0	1.3	1	0	0	1	1	1	0	Ferrochelatase
F420_oxidored	PF03807.17	gi|390938761|ref|YP_006402499.1|	-	0.12	13.0	0.1	16	6.2	0.0	3.4	3	1	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
Chromate_transp	PF02417.15	gi|390938762|ref|YP_006402500.1|	-	7.4e-42	143.2	18.4	8.7e-42	142.9	18.4	1.0	1	0	0	1	1	1	1	Chromate	transporter
CdvA	PF18822.1	gi|390938763|ref|YP_006402501.1|	-	9.4e-38	128.8	10.0	1.2e-37	128.4	10.0	1.2	1	0	0	1	1	1	1	CdvA-like	coiled-coil	domain
BLOC1_2	PF10046.9	gi|390938763|ref|YP_006402501.1|	-	0.001	19.3	11.1	0.05	13.9	4.9	2.8	4	0	0	4	4	3	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Fmp27_WPPW	PF10359.9	gi|390938763|ref|YP_006402501.1|	-	0.0024	16.8	5.1	0.003	16.5	4.1	1.6	1	1	1	2	2	2	1	RNA	pol	II	promoter	Fmp27	protein	domain
Golgin_A5	PF09787.9	gi|390938763|ref|YP_006402501.1|	-	0.0025	17.4	3.4	0.0032	17.0	3.4	1.2	1	0	0	1	1	1	1	Golgin	subfamily	A	member	5
T2SSF	PF00482.23	gi|390938763|ref|YP_006402501.1|	-	0.0059	16.5	0.1	0.011	15.7	0.1	1.4	1	0	0	1	1	1	1	Type	II	secretion	system	(T2SS),	protein	F
PIN_8	PF18476.1	gi|390938763|ref|YP_006402501.1|	-	0.008	16.1	4.3	0.011	15.6	4.3	1.1	1	0	0	1	1	1	1	PIN	like	domain
PRC	PF05239.16	gi|390938763|ref|YP_006402501.1|	-	0.012	15.7	1.3	0.02	15.0	0.3	1.8	2	0	0	2	2	2	0	PRC-barrel	domain
Syntaxin-6_N	PF09177.11	gi|390938763|ref|YP_006402501.1|	-	0.014	15.9	3.2	0.041	14.4	3.2	1.8	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
Baculo_PEP_C	PF04513.12	gi|390938763|ref|YP_006402501.1|	-	0.041	13.9	0.2	0.17	11.9	0.0	1.9	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Exonuc_VII_L	PF02601.15	gi|390938763|ref|YP_006402501.1|	-	0.043	13.4	0.9	0.057	13.0	0.9	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Pex19	PF04614.12	gi|390938763|ref|YP_006402501.1|	-	0.064	13.0	0.9	0.095	12.5	0.8	1.3	1	1	0	1	1	1	0	Pex19	protein	family
DUF2721	PF11026.8	gi|390938763|ref|YP_006402501.1|	-	0.075	12.9	0.1	0.13	12.1	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
DNA_primase_lrg	PF04104.14	gi|390938763|ref|YP_006402501.1|	-	0.14	11.6	1.0	0.17	11.2	1.0	1.3	1	0	0	1	1	1	0	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
DapH_N	PF08503.10	gi|390938763|ref|YP_006402501.1|	-	0.26	11.6	2.8	3.9	7.8	0.7	2.9	1	1	2	3	3	3	0	Tetrahydrodipicolinate	succinyltransferase	N-terminal
Prefoldin	PF02996.17	gi|390938763|ref|YP_006402501.1|	-	0.27	11.2	6.4	5.4	7.0	0.0	3.0	2	1	1	3	3	3	0	Prefoldin	subunit
Fib_alpha	PF08702.10	gi|390938763|ref|YP_006402501.1|	-	0.35	11.1	4.8	0.32	11.2	2.5	1.8	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
ISG65-75	PF11727.8	gi|390938763|ref|YP_006402501.1|	-	0.43	9.8	8.0	0.47	9.6	4.0	2.0	1	1	0	2	2	2	0	Invariant	surface	glycoprotein
MerR-DNA-bind	PF09278.11	gi|390938763|ref|YP_006402501.1|	-	0.95	10.0	3.3	16	6.2	0.2	3.1	4	0	0	4	4	3	0	MerR,	DNA	binding
FliT	PF05400.13	gi|390938763|ref|YP_006402501.1|	-	1	10.2	5.7	1.2	10.0	2.7	2.1	2	0	0	2	2	2	0	Flagellar	protein	FliT
DUF883	PF05957.13	gi|390938763|ref|YP_006402501.1|	-	1.3	9.7	4.7	0.47	11.1	2.0	1.7	2	0	0	2	2	1	0	Bacterial	protein	of	unknown	function	(DUF883)
PmbA_TldD	PF01523.16	gi|390938764|ref|YP_006402502.1|	-	2.6e-47	162.0	0.0	9.6e-47	160.1	0.0	1.7	2	0	0	2	2	2	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.16	gi|390938765|ref|YP_006402503.1|	-	2.4e-45	155.5	0.0	3.9e-45	154.9	0.0	1.3	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
DUF3096	PF11295.8	gi|390938766|ref|YP_006402504.1|	-	3.1e-05	23.5	13.9	4e-05	23.2	12.1	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3096)
DUF308	PF03729.13	gi|390938766|ref|YP_006402504.1|	-	0.038	14.3	9.7	0.12	12.8	9.3	1.8	1	1	1	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
Neurensin	PF14927.6	gi|390938766|ref|YP_006402504.1|	-	0.11	12.2	0.3	0.12	12.1	0.3	1.2	1	0	0	1	1	1	0	Neurensin
SLATT_6	PF18169.1	gi|390938766|ref|YP_006402504.1|	-	0.22	11.1	2.1	0.24	11.0	2.1	1.1	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain	6
PhoU	PF01895.19	gi|390938767|ref|YP_006402505.1|	-	3.9e-24	84.9	15.6	5.3e-19	68.5	8.6	2.4	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|390938767|ref|YP_006402505.1|	-	1.6e-09	37.5	0.0	3.5e-09	36.4	0.0	1.6	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
RRM_3	PF08777.11	gi|390938767|ref|YP_006402505.1|	-	0.14	12.2	0.2	1.4	9.0	0.0	2.2	2	0	0	2	2	2	0	RNA	binding	motif
ParBc	PF02195.18	gi|390938768|ref|YP_006402506.1|	-	3.7e-07	30.3	0.0	0.0041	17.4	0.0	2.4	2	0	0	2	2	2	2	ParB-like	nuclease	domain
ParBc_2	PF08857.11	gi|390938768|ref|YP_006402506.1|	-	9.5e-07	29.0	0.2	0.024	14.7	0.0	2.6	2	1	1	3	3	3	2	Putative	ParB-like	nuclease
DUF2897	PF11446.8	gi|390938769|ref|YP_006402507.1|	-	0.06	13.2	7.6	0.1	12.5	0.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2897)
DUF134	PF02001.16	gi|390938770|ref|YP_006402508.1|	-	5e-13	49.4	0.0	6.6e-13	49.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF134
HTH_23	PF13384.6	gi|390938770|ref|YP_006402508.1|	-	5.4e-05	22.9	0.2	0.00013	21.7	0.2	1.6	1	1	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|390938770|ref|YP_006402508.1|	-	0.00013	21.5	0.1	0.00019	21.0	0.1	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_ECF	PF07638.11	gi|390938770|ref|YP_006402508.1|	-	0.00029	20.8	0.1	0.00035	20.5	0.1	1.1	1	0	0	1	1	1	1	ECF	sigma	factor
Sigma70_r4	PF04545.16	gi|390938770|ref|YP_006402508.1|	-	0.0021	17.5	0.1	0.0028	17.1	0.1	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
DUF1492	PF07374.11	gi|390938770|ref|YP_006402508.1|	-	0.022	14.9	0.0	0.029	14.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1492)
HTH_10	PF04967.12	gi|390938770|ref|YP_006402508.1|	-	0.037	13.8	0.1	0.085	12.7	0.1	1.7	1	1	0	1	1	1	0	HTH	DNA	binding	domain
HTH_29	PF13551.6	gi|390938770|ref|YP_006402508.1|	-	0.048	13.7	0.1	0.048	13.7	0.1	1.6	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_1	PF00126.27	gi|390938770|ref|YP_006402508.1|	-	0.091	12.7	0.1	0.12	12.3	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF5320	PF17253.2	gi|390938771|ref|YP_006402509.1|	-	8.9e-05	23.5	0.0	0.00014	22.9	0.0	1.4	1	1	0	1	1	1	1	Family	of	unknown	function	(DUF5320)
DS	PF01916.17	gi|390938773|ref|YP_006402511.1|	-	1.7e-90	303.2	0.0	1.9e-90	303.0	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
FRB_dom	PF08771.11	gi|390938773|ref|YP_006402511.1|	-	0.094	13.1	0.1	0.22	12.0	0.1	1.6	1	0	0	1	1	1	0	FKBP12-rapamycin	binding	domain
NADHdh	PF00146.21	gi|390938774|ref|YP_006402512.1|	-	3.8e-64	216.9	18.7	4.6e-64	216.6	18.7	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
MDM31_MDM32	PF08118.11	gi|390938775|ref|YP_006402513.1|	-	0.03	13.0	0.3	0.032	12.9	0.3	1.1	1	0	0	1	1	1	0	Yeast	mitochondrial	distribution	and	morphology	(MDM)	proteins
IMPDH	PF00478.25	gi|390938775|ref|YP_006402513.1|	-	0.052	12.6	0.0	0.065	12.2	0.0	1.0	1	0	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
MNHE	PF01899.16	gi|390938776|ref|YP_006402514.1|	-	3.3e-35	121.0	3.9	3.8e-35	120.8	3.9	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
Oxidored_q2	PF00420.24	gi|390938777|ref|YP_006402515.1|	-	2.8e-17	62.2	2.6	3.7e-17	61.9	2.6	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
MnhB	PF04039.13	gi|390938778|ref|YP_006402516.1|	-	2.3e-16	60.2	13.7	2.3e-16	60.2	13.7	2.4	2	1	0	2	2	2	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF2106	PF09879.9	gi|390938778|ref|YP_006402516.1|	-	0.002	17.7	0.5	0.002	17.7	0.5	2.3	2	1	0	2	2	2	1	Predicted	membrane	protein	(DUF2106)
GPI2	PF06432.11	gi|390938778|ref|YP_006402516.1|	-	0.078	12.4	4.4	0.33	10.3	4.4	2.1	1	1	0	1	1	1	0	Phosphatidylinositol	N-acetylglucosaminyltransferase
DUF4519	PF15012.6	gi|390938778|ref|YP_006402516.1|	-	8.4	6.7	12.2	1.8	8.8	2.5	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4519)
DUF4040	PF13244.6	gi|390938779|ref|YP_006402517.1|	-	1.3e-13	50.9	3.9	1.3e-13	50.9	3.9	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4040)
Proton_antipo_M	PF00361.20	gi|390938779|ref|YP_006402517.1|	-	0.00019	20.7	2.4	0.0002	20.7	2.4	1.0	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
EamA	PF00892.20	gi|390938779|ref|YP_006402517.1|	-	0.23	11.6	9.5	0.37	11.0	9.5	1.3	1	1	0	1	1	1	0	EamA-like	transporter	family
DUF2070	PF09843.9	gi|390938779|ref|YP_006402517.1|	-	1	7.6	6.9	1.1	7.5	6.9	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
PhaG_MnhG_YufB	PF03334.14	gi|390938780|ref|YP_006402518.1|	-	2.2e-17	63.0	8.2	2.8e-17	62.7	8.2	1.1	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
MrpF_PhaF	PF04066.13	gi|390938781|ref|YP_006402519.1|	-	8.3e-09	35.7	8.7	8.3e-09	35.7	8.7	1.7	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
Fer4	PF00037.27	gi|390938782|ref|YP_006402520.1|	-	2e-17	62.2	6.7	3.9e-09	36.0	0.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390938782|ref|YP_006402520.1|	-	2.3e-13	50.5	6.0	3.7e-13	49.8	6.0	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|390938782|ref|YP_006402520.1|	-	1.2e-11	44.5	7.4	1.7e-11	44.0	7.4	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|390938782|ref|YP_006402520.1|	-	5.2e-10	39.3	8.4	7.5e-10	38.8	8.4	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|390938782|ref|YP_006402520.1|	-	1.1e-09	39.1	30.6	1.6e-05	25.8	12.0	2.3	1	1	2	3	3	3	3	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|390938782|ref|YP_006402520.1|	-	2e-09	37.4	6.3	9.1e-05	22.5	1.9	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|390938782|ref|YP_006402520.1|	-	9e-09	35.0	10.2	0.00018	21.4	0.6	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|390938782|ref|YP_006402520.1|	-	1.4e-07	31.1	9.4	7.7e-05	22.6	1.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|390938782|ref|YP_006402520.1|	-	5.3e-06	27.0	18.4	0.0012	19.7	3.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|390938782|ref|YP_006402520.1|	-	9.9e-06	25.9	11.6	9.2e-05	22.8	12.0	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|390938782|ref|YP_006402520.1|	-	3.9e-05	24.3	4.8	0.034	14.9	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.6	gi|390938782|ref|YP_006402520.1|	-	5e-05	23.7	12.0	0.0012	19.3	12.4	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|390938782|ref|YP_006402520.1|	-	0.00014	22.1	8.0	0.051	14.1	0.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|390938782|ref|YP_006402520.1|	-	0.00034	21.4	3.3	0.078	13.8	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|390938782|ref|YP_006402520.1|	-	0.00051	20.5	6.0	0.12	12.9	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|390938782|ref|YP_006402520.1|	-	0.13	12.5	9.7	1.6	9.0	2.5	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
DUF3079	PF11278.8	gi|390938782|ref|YP_006402520.1|	-	1.4	8.7	6.1	1.7	8.5	0.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3079)
Complex1_49kDa	PF00346.19	gi|390938783|ref|YP_006402521.1|	-	5.7e-67	225.7	0.0	6.2e-52	176.4	0.0	2.1	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|390938783|ref|YP_006402521.1|	-	3.5e-05	22.9	0.0	0.00012	21.2	0.0	1.7	2	0	0	2	2	2	1	Nickel-dependent	hydrogenase
Complex1_30kDa	PF00329.19	gi|390938784|ref|YP_006402522.1|	-	3.4e-26	92.2	0.0	5.1e-26	91.7	0.0	1.3	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Oxidored_q6	PF01058.22	gi|390938784|ref|YP_006402522.1|	-	1.3e-09	38.0	0.0	2.2e-09	37.2	0.0	1.4	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
DUF35_N	PF12172.8	gi|390938784|ref|YP_006402522.1|	-	0.05	13.5	0.5	0.18	11.7	0.1	2.0	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Proton_antipo_M	PF00361.20	gi|390938785|ref|YP_006402523.1|	-	5.4e-29	101.3	25.8	5.4e-29	101.3	25.8	1.7	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
NADHdeh_related	PF10125.9	gi|390938785|ref|YP_006402523.1|	-	6.6e-09	35.5	8.6	3e-08	33.3	8.6	2.1	1	0	0	1	1	1	1	NADH	dehydrogenase	I,	subunit	N	related	protein
Peptidase_M20	PF01546.28	gi|390938786|ref|YP_006402524.1|	-	7.7e-38	130.3	0.0	9.4e-38	130.0	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|390938786|ref|YP_006402524.1|	-	3.5e-17	62.3	0.0	2e-16	59.9	0.0	2.1	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|390938786|ref|YP_006402524.1|	-	1.3e-06	28.2	0.0	1.9e-06	27.7	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M28
Peptidase_M32	PF02074.15	gi|390938787|ref|YP_006402525.1|	-	4.5e-162	540.2	0.0	5.3e-162	540.0	0.0	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
LAGLIDADG_1	PF00961.19	gi|390938787|ref|YP_006402525.1|	-	0.081	13.9	0.5	0.31	12.0	0.0	2.2	3	0	0	3	3	3	0	LAGLIDADG	endonuclease
SNase	PF00565.17	gi|390938788|ref|YP_006402526.1|	-	5.7e-07	30.0	0.0	1.4e-06	28.7	0.0	1.7	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
SKG6	PF08693.10	gi|390938788|ref|YP_006402526.1|	-	0.025	14.0	1.3	0.099	12.1	1.3	2.1	1	0	0	1	1	1	0	Transmembrane	alpha-helix	domain
Ribosomal_S25	PF03297.15	gi|390938789|ref|YP_006402527.1|	-	2.1e-11	43.9	0.1	2.6e-11	43.6	0.1	1.2	1	0	0	1	1	1	1	S25	ribosomal	protein
EAP30	PF04157.16	gi|390938789|ref|YP_006402527.1|	-	0.0057	16.0	0.0	0.006	15.9	0.0	1.1	1	0	0	1	1	1	1	EAP30/Vps36	family
Fe_dep_repress	PF01325.19	gi|390938789|ref|YP_006402527.1|	-	0.071	13.3	0.0	0.094	12.9	0.0	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|390938789|ref|YP_006402527.1|	-	0.12	12.0	0.4	0.23	11.1	0.4	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF998	PF06197.13	gi|390938790|ref|YP_006402528.1|	-	1.5e-09	37.8	15.2	1.9e-09	37.4	15.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
DUF1772	PF08592.11	gi|390938790|ref|YP_006402528.1|	-	0.12	12.6	9.9	0.056	13.8	3.8	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1772)
M16C_assoc	PF08367.11	gi|390938790|ref|YP_006402528.1|	-	0.27	10.4	0.0	0.34	10.0	0.0	1.1	1	0	0	1	1	1	0	Peptidase	M16C	associated
HKR_ArcB_TM	PF18415.1	gi|390938790|ref|YP_006402528.1|	-	1.8	9.4	10.2	2	9.3	8.2	2.1	1	1	0	2	2	2	0	Histidine	kinase	receptor	ArcB	trans-membrane	domain
DUF3007	PF11460.8	gi|390938790|ref|YP_006402528.1|	-	3.5	7.9	8.0	0.84	9.9	3.4	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3007)
ABC2_membrane	PF01061.24	gi|390938791|ref|YP_006402529.1|	-	1.1e-17	64.2	22.3	1.1e-17	64.2	22.3	1.3	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_2	PF12679.7	gi|390938791|ref|YP_006402529.1|	-	3.7e-06	26.4	15.5	6.4e-06	25.7	15.5	1.3	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|390938792|ref|YP_006402530.1|	-	0.00035	20.6	13.8	0.00035	20.6	13.8	1.9	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|390938792|ref|YP_006402530.1|	-	0.00038	19.7	34.6	0.00049	19.3	34.6	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|390938792|ref|YP_006402530.1|	-	0.069	12.4	14.7	0.042	13.1	12.9	1.7	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|390938793|ref|YP_006402531.1|	-	4.4e-28	98.5	0.0	2e-27	96.4	0.0	1.8	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|390938793|ref|YP_006402531.1|	-	1.8e-07	31.2	0.0	0.022	14.6	0.0	2.4	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|390938793|ref|YP_006402531.1|	-	2.5e-07	31.3	1.4	3.6e-07	30.8	0.4	1.9	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4162)
KdpD	PF02702.17	gi|390938793|ref|YP_006402531.1|	-	6.2e-05	22.6	0.6	0.00089	18.8	0.2	2.6	2	1	1	3	3	3	1	Osmosensitive	K+	channel	His	kinase	sensor	domain
AAA	PF00004.29	gi|390938793|ref|YP_006402531.1|	-	0.0011	19.4	0.7	0.051	14.0	0.3	2.9	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|390938793|ref|YP_006402531.1|	-	0.0013	17.9	0.1	0.01	15.0	0.1	2.0	1	1	0	1	1	1	1	NB-ARC	domain
AAA_23	PF13476.6	gi|390938793|ref|YP_006402531.1|	-	0.0018	18.8	0.3	0.0036	17.8	0.1	1.6	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|390938793|ref|YP_006402531.1|	-	0.011	15.1	1.0	3	7.2	0.1	2.6	2	1	1	3	3	3	0	RecF/RecN/SMC	N	terminal	domain
SRP54	PF00448.22	gi|390938793|ref|YP_006402531.1|	-	0.016	14.8	0.0	0.061	12.9	0.0	1.8	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.6	gi|390938793|ref|YP_006402531.1|	-	0.03	14.0	0.1	0.076	12.7	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|390938793|ref|YP_006402531.1|	-	0.031	14.0	0.1	0.067	12.9	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.14	gi|390938793|ref|YP_006402531.1|	-	0.094	12.7	0.1	0.58	10.1	0.0	2.3	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
MrpF_PhaF	PF04066.13	gi|390938794|ref|YP_006402532.1|	-	4.5e-11	43.0	4.9	4.5e-11	43.0	4.9	1.9	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
PhaG_MnhG_YufB	PF03334.14	gi|390938795|ref|YP_006402533.1|	-	2.2e-19	69.5	11.3	2.8e-19	69.1	11.3	1.2	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
FAM163	PF15069.6	gi|390938795|ref|YP_006402533.1|	-	0.024	15.1	0.0	0.03	14.8	0.0	1.2	1	0	0	1	1	1	0	FAM163	family
Virul_fac_BrkB	PF03631.15	gi|390938795|ref|YP_006402533.1|	-	0.027	14.1	9.7	0.036	13.7	9.7	1.1	1	0	0	1	1	1	0	Virulence	factor	BrkB
ExoD	PF06055.12	gi|390938795|ref|YP_006402533.1|	-	0.14	11.5	6.2	0.12	11.8	5.4	1.4	1	1	0	1	1	1	0	Exopolysaccharide	synthesis,	ExoD
DUF4040	PF13244.6	gi|390938796|ref|YP_006402534.1|	-	1.5e-09	37.8	6.4	1.5e-09	37.8	6.4	1.8	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4040)
DUF2070	PF09843.9	gi|390938796|ref|YP_006402534.1|	-	0.53	8.5	11.4	0.53	8.5	11.4	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF4305	PF14146.6	gi|390938796|ref|YP_006402534.1|	-	1.4	9.2	10.9	5.2	7.3	0.6	3.8	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4305)
MnhB	PF04039.13	gi|390938797|ref|YP_006402535.1|	-	9.3e-18	64.7	11.2	9.3e-18	64.7	11.2	2.4	2	1	0	3	3	3	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF2106	PF09879.9	gi|390938797|ref|YP_006402535.1|	-	0.032	13.8	0.2	0.11	12.1	0.2	1.9	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2106)
Oxidored_q2	PF00420.24	gi|390938798|ref|YP_006402536.1|	-	4.2e-19	68.1	4.8	5.3e-19	67.8	4.8	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Ammonium_transp	PF00909.21	gi|390938798|ref|YP_006402536.1|	-	0.016	13.9	1.1	0.019	13.6	1.1	1.1	1	0	0	1	1	1	0	Ammonium	Transporter	Family
AzlC	PF03591.14	gi|390938798|ref|YP_006402536.1|	-	0.1	13.1	2.6	0.16	12.4	2.6	1.4	1	1	0	1	1	1	0	AzlC	protein
MNHE	PF01899.16	gi|390938799|ref|YP_006402537.1|	-	5.7e-34	117.0	0.7	6.4e-34	116.8	0.7	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
Proton_antipo_M	PF00361.20	gi|390938800|ref|YP_006402538.1|	-	6.5e-46	156.9	22.4	1.4e-45	155.7	22.4	1.6	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|390938800|ref|YP_006402538.1|	-	0.00041	20.4	1.2	0.00041	20.4	1.2	3.9	4	0	0	4	4	4	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
PAPS_reduct	PF01507.19	gi|390938801|ref|YP_006402539.1|	-	5.4e-32	111.2	0.0	7.7e-32	110.7	0.0	1.2	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.17	gi|390938801|ref|YP_006402539.1|	-	0.0022	17.2	0.1	0.0031	16.7	0.1	1.2	1	0	0	1	1	1	1	NAD	synthase
AFOR_C	PF01314.18	gi|390938802|ref|YP_006402540.1|	-	2.9e-112	375.5	0.1	3.5e-112	375.2	0.1	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|390938802|ref|YP_006402540.1|	-	5.1e-75	251.7	0.1	8.4e-75	251.0	0.1	1.4	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
CTP-dep_RFKase	PF01982.16	gi|390938803|ref|YP_006402541.1|	-	2.2e-30	105.2	0.2	2.5e-30	105.0	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
MazE_antitoxin	PF04014.18	gi|390938803|ref|YP_006402541.1|	-	0.0051	16.7	0.2	0.022	14.7	0.0	2.2	2	1	1	3	3	3	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
SAM_adeno_trans	PF01887.16	gi|390938805|ref|YP_006402543.1|	-	4.8e-82	274.9	0.0	5.4e-82	274.7	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
TcpA	PF05946.12	gi|390938805|ref|YP_006402543.1|	-	0.0072	16.4	0.0	0.013	15.6	0.0	1.4	1	0	0	1	1	1	1	Toxin-coregulated	pilus	subunit	TcpA
Glyco_hydro_57	PF03065.15	gi|390938806|ref|YP_006402544.1|	-	2.3e-79	267.0	0.2	3.3e-79	266.5	0.2	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
Glucodextran_C	PF09985.9	gi|390938806|ref|YP_006402544.1|	-	1.1e-72	244.2	0.3	1.2e-71	240.8	0.2	2.4	2	0	0	2	2	2	1	C-terminal	binding-module,	SLH-like,	of	glucodextranase
RIFIN	PF02009.16	gi|390938806|ref|YP_006402544.1|	-	0.094	12.6	3.8	0.15	12.0	3.8	1.2	1	0	0	1	1	1	0	Rifin
DUF5305	PF17231.2	gi|390938806|ref|YP_006402544.1|	-	0.3	10.4	15.6	0.67	9.3	15.6	1.6	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
MGC-24	PF05283.11	gi|390938806|ref|YP_006402544.1|	-	0.36	11.3	19.7	0.046	14.2	15.5	1.6	2	0	0	2	2	2	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
Presenilin	PF01080.17	gi|390938806|ref|YP_006402544.1|	-	0.36	9.5	9.6	0.52	9.0	9.6	1.2	1	0	0	1	1	1	0	Presenilin
Flp1_like	PF16982.5	gi|390938806|ref|YP_006402544.1|	-	1	8.8	5.9	2.8	7.4	5.9	1.7	1	0	0	1	1	1	0	Putative	Flagellin,	Flp1-like,	domain
Stevor	PF17410.2	gi|390938806|ref|YP_006402544.1|	-	3.5	7.1	4.3	5.6	6.4	4.3	1.2	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
FSA_C	PF10479.9	gi|390938806|ref|YP_006402544.1|	-	6.2	4.8	14.9	9.2	4.3	14.9	1.1	1	0	0	1	1	1	0	Fragile	site-associated	protein	C-terminus
TMEM154	PF15102.6	gi|390938806|ref|YP_006402544.1|	-	8.3	6.3	16.4	16	5.4	16.4	1.4	1	0	0	1	1	1	0	TMEM154	protein	family
MFS_1	PF07690.16	gi|390938807|ref|YP_006402545.1|	-	4.9e-29	101.4	45.3	4.1e-17	62.1	15.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|390938807|ref|YP_006402545.1|	-	2.7e-13	49.5	24.2	9.6e-09	34.6	12.4	2.1	1	1	1	2	2	2	2	MFS_1	like	family
MFS_3	PF05977.13	gi|390938807|ref|YP_006402545.1|	-	2e-05	23.2	17.7	4.4e-05	22.1	6.0	2.0	1	1	1	2	2	2	2	Transmembrane	secretion	effector
GPI2	PF06432.11	gi|390938807|ref|YP_006402545.1|	-	0.0029	17.1	0.0	0.11	11.9	0.0	2.6	1	1	0	1	1	1	1	Phosphatidylinositol	N-acetylglucosaminyltransferase
MscL	PF01741.18	gi|390938807|ref|YP_006402545.1|	-	0.086	13.1	4.5	5.2	7.4	0.4	3.1	2	1	0	2	2	2	0	Large-conductance	mechanosensitive	channel,	MscL
Gemini_mov	PF01708.16	gi|390938807|ref|YP_006402545.1|	-	0.15	11.9	0.4	0.57	10.0	0.4	2.1	1	0	0	1	1	1	0	Geminivirus	putative	movement	protein
PDDEXK_1	PF12705.7	gi|390938808|ref|YP_006402546.1|	-	6.8e-08	32.7	0.7	7e-05	22.8	0.1	2.8	1	1	1	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
PDDEXK_3	PF13366.6	gi|390938808|ref|YP_006402546.1|	-	1.8e-05	25.1	0.0	3.6e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Hjc	PF01870.18	gi|390938808|ref|YP_006402546.1|	-	0.019	15.0	0.0	0.077	13.0	0.0	1.9	2	0	0	2	2	2	0	Archaeal	holliday	junction	resolvase	(hjc)
DpnII-MboI	PF18742.1	gi|390938808|ref|YP_006402546.1|	-	0.038	13.6	0.1	0.44	10.2	0.0	2.1	2	0	0	2	2	2	0	REase_DpnII-MboI
Tox-REase-9	PF15650.6	gi|390938808|ref|YP_006402546.1|	-	0.11	12.8	0.0	0.2	11.9	0.0	1.5	1	0	0	1	1	1	0	Restriction	endonuclease	fold	toxin	9
CYTH	PF01928.21	gi|390938809|ref|YP_006402547.1|	-	1.2e-21	77.4	0.1	1.6e-21	77.0	0.1	1.1	1	0	0	1	1	1	1	CYTH	domain
SAM_3	PF18016.1	gi|390938809|ref|YP_006402547.1|	-	0.049	13.4	0.0	0.29	10.9	0.0	2.0	2	0	0	2	2	2	0	SAM	domain	(Sterile	alpha	motif)
HTH_Tnp_Mu_1	PF02316.16	gi|390938809|ref|YP_006402547.1|	-	0.18	12.0	0.0	0.3	11.3	0.0	1.3	1	0	0	1	1	1	0	Mu	DNA-binding	domain
Hist_deacetyl	PF00850.19	gi|390938810|ref|YP_006402548.1|	-	6.2e-48	163.8	0.0	8.9e-48	163.3	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
DHH	PF01368.20	gi|390938811|ref|YP_006402549.1|	-	0.00057	20.1	0.0	0.00094	19.4	0.0	1.3	1	0	0	1	1	1	1	DHH	family
CDP-OH_P_transf	PF01066.21	gi|390938812|ref|YP_006402550.1|	-	3.8e-12	46.8	3.8	3.8e-12	46.8	3.8	2.5	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
AP_endonuc_2	PF01261.24	gi|390938813|ref|YP_006402551.1|	-	7e-19	68.1	0.0	8.6e-19	67.8	0.0	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
DUF2120	PF09893.9	gi|390938813|ref|YP_006402551.1|	-	0.0012	18.9	0.0	0.0046	17.1	0.0	1.8	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
UvdE	PF03851.14	gi|390938813|ref|YP_006402551.1|	-	0.059	12.6	0.0	0.094	11.9	0.0	1.3	1	0	0	1	1	1	0	UV-endonuclease	UvdE
NUDIX	PF00293.28	gi|390938814|ref|YP_006402552.1|	-	3.5e-17	62.7	0.0	4.7e-17	62.3	0.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
ATP-synt_D	PF01813.17	gi|390938816|ref|YP_006402554.1|	-	6.3e-35	120.8	12.1	7.2e-35	120.6	12.1	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	D
DUF61	PF01886.16	gi|390938817|ref|YP_006402555.1|	-	3.6e-34	117.5	0.2	4e-34	117.4	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF61
V-ATPase_G_2	PF16999.5	gi|390938818|ref|YP_006402556.1|	-	7.5e-05	23.1	10.5	0.00011	22.5	10.5	1.4	1	1	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
DivIVA	PF05103.13	gi|390938818|ref|YP_006402556.1|	-	0.00027	21.0	7.9	0.061	13.4	1.0	2.1	2	0	0	2	2	2	2	DivIVA	protein
HrpE	PF06188.12	gi|390938818|ref|YP_006402556.1|	-	0.025	14.5	1.3	0.045	13.6	1.2	1.3	1	1	0	1	1	1	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
ATP-synt_B	PF00430.18	gi|390938818|ref|YP_006402556.1|	-	0.048	13.8	11.7	0.12	12.4	11.7	1.6	1	1	0	1	1	1	0	ATP	synthase	B/B'	CF(0)
ERp29	PF07749.12	gi|390938818|ref|YP_006402556.1|	-	0.21	12.5	6.7	1.3	10.0	0.5	2.0	1	1	1	2	2	2	0	Endoplasmic	reticulum	protein	ERp29,	C-terminal	domain
RNase_J_C	PF17770.1	gi|390938818|ref|YP_006402556.1|	-	0.26	12.4	0.4	0.26	12.4	0.4	2.2	2	1	0	2	2	2	0	Ribonuclease	J	C-terminal	domain
DUF3552	PF12072.8	gi|390938818|ref|YP_006402556.1|	-	0.38	10.1	12.8	0.66	9.4	2.3	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
FmdE	PF02663.14	gi|390938818|ref|YP_006402556.1|	-	0.39	10.8	3.2	0.51	10.4	3.2	1.1	1	0	0	1	1	1	0	FmdE,	Molybdenum	formylmethanofuran	dehydrogenase	operon
V-ATPase_G	PF03179.15	gi|390938818|ref|YP_006402556.1|	-	1.2	9.7	12.0	2	9.0	12.0	1.4	1	1	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
V_ATPase_I	PF01496.19	gi|390938819|ref|YP_006402557.1|	-	2.9e-25	88.4	9.8	9.4e-14	50.3	0.0	3.6	2	1	1	4	4	4	2	V-type	ATPase	116kDa	subunit	family
Xrn1_D3	PF18194.1	gi|390938819|ref|YP_006402557.1|	-	0.013	15.6	0.1	0.22	11.7	0.0	2.4	2	0	0	2	2	2	0	Exoribonuclease	1	Domain-3
MscL	PF01741.18	gi|390938819|ref|YP_006402557.1|	-	0.035	14.4	1.0	0.1	12.9	1.0	1.8	1	0	0	1	1	1	0	Large-conductance	mechanosensitive	channel,	MscL
NPV_P10	PF05531.12	gi|390938819|ref|YP_006402557.1|	-	0.04	14.4	0.0	0.32	11.5	0.0	2.4	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF4988	PF16378.5	gi|390938819|ref|YP_006402557.1|	-	0.057	13.1	1.0	0.71	9.5	0.1	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function
SCO1-SenC	PF02630.14	gi|390938819|ref|YP_006402557.1|	-	0.1	12.5	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	SCO1/SenC
Spc7	PF08317.11	gi|390938819|ref|YP_006402557.1|	-	0.14	11.1	1.3	0.27	10.1	1.3	1.4	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Prefoldin	PF02996.17	gi|390938819|ref|YP_006402557.1|	-	0.15	12.0	3.2	3.3	7.6	0.1	3.0	3	0	0	3	3	3	0	Prefoldin	subunit
Prefoldin_2	PF01920.20	gi|390938819|ref|YP_006402557.1|	-	2.2	8.3	5.1	12	5.9	0.2	3.0	2	1	1	3	3	3	0	Prefoldin	subunit
Val_tRNA-synt_C	PF10458.9	gi|390938819|ref|YP_006402557.1|	-	4.3	7.7	7.3	7.7	6.9	0.1	2.8	3	0	0	3	3	3	0	Valyl	tRNA	synthetase	tRNA	binding	arm
ATP-synt_C	PF00137.21	gi|390938820|ref|YP_006402558.1|	-	1.9e-14	53.7	14.0	8e-09	35.7	1.0	2.2	2	0	0	2	2	2	2	ATP	synthase	subunit	C
vATP-synt_E	PF01991.18	gi|390938821|ref|YP_006402559.1|	-	5e-11	42.4	16.4	2.2e-10	40.3	16.4	2.1	1	1	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
V-ATPase_G_2	PF16999.5	gi|390938821|ref|YP_006402559.1|	-	0.00081	19.8	22.3	0.11	12.9	12.2	2.5	1	1	1	2	2	2	2	Vacuolar	(H+)-ATPase	G	subunit
DivIVA	PF05103.13	gi|390938821|ref|YP_006402559.1|	-	0.0041	17.2	14.6	0.069	13.2	3.3	2.7	1	1	2	3	3	3	2	DivIVA	protein
DUF3552	PF12072.8	gi|390938821|ref|YP_006402559.1|	-	0.013	15.0	18.0	0.24	10.8	11.6	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
HrpE	PF06188.12	gi|390938821|ref|YP_006402559.1|	-	0.016	15.1	4.7	0.76	9.6	4.8	2.1	1	1	1	2	2	2	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
ATP-synt_B	PF00430.18	gi|390938821|ref|YP_006402559.1|	-	0.1	12.7	17.5	1.1	9.3	14.7	2.2	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
DUF2335	PF10097.9	gi|390938821|ref|YP_006402559.1|	-	0.65	10.0	11.8	4.7	7.2	5.8	2.7	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2335)
Flot	PF15975.5	gi|390938821|ref|YP_006402559.1|	-	8.2	6.7	11.7	0.26	11.5	4.9	1.9	2	0	0	2	2	2	0	Flotillin
DUF2247	PF10004.9	gi|390938823|ref|YP_006402561.1|	-	0.15	11.9	0.0	0.24	11.2	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2247)
ATP-synt_ab	PF00006.25	gi|390938824|ref|YP_006402562.1|	-	4.5e-84	281.4	0.0	7.4e-84	280.7	0.0	1.4	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|390938824|ref|YP_006402562.1|	-	1.5e-41	141.1	0.1	2.6e-41	140.3	0.1	1.4	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|390938824|ref|YP_006402562.1|	-	7.9e-16	58.3	3.8	2.2e-15	56.9	3.8	1.8	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
DUF2085	PF09858.9	gi|390938824|ref|YP_006402562.1|	-	0.14	12.6	0.0	0.35	11.4	0.0	1.6	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2085)
ATP-synt_ab	PF00006.25	gi|390938825|ref|YP_006402563.1|	-	6.1e-65	218.8	0.0	8.7e-65	218.3	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|390938825|ref|YP_006402563.1|	-	0.00058	20.3	1.2	0.0012	19.4	1.2	1.5	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|390938825|ref|YP_006402563.1|	-	0.019	15.1	2.2	0.02	15.0	0.5	1.9	2	0	0	2	2	2	0	HAS	barrel	domain
Diphthami_syn_2	PF01902.17	gi|390938826|ref|YP_006402564.1|	-	5.6e-52	176.4	0.0	6.4e-52	176.2	0.0	1.0	1	0	0	1	1	1	1	Diphthamide	synthase
QueC	PF06508.13	gi|390938826|ref|YP_006402564.1|	-	0.0046	16.5	0.0	0.007	15.9	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
UPF0004	PF00919.20	gi|390938826|ref|YP_006402564.1|	-	0.21	11.7	0.0	9	6.4	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	family	UPF0004
tRNA_Me_trans	PF03054.16	gi|390938826|ref|YP_006402564.1|	-	0.24	10.2	0.0	0.31	9.8	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
DUF3945	PF13101.6	gi|390938827|ref|YP_006402565.1|	-	0.1	12.3	0.1	0.25	11.1	0.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3945)
tRNA-synt_2b	PF00587.25	gi|390938828|ref|YP_006402566.1|	-	5.4e-29	101.4	0.0	1e-28	100.5	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|390938828|ref|YP_006402566.1|	-	2.2e-21	75.8	0.1	4.3e-21	74.9	0.1	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
ProRS-C_1	PF09180.11	gi|390938828|ref|YP_006402566.1|	-	3.2e-06	27.2	0.0	7.9e-06	26.0	0.0	1.7	2	0	0	2	2	2	1	Prolyl-tRNA	synthetase,	C-terminal
Glyoxalase	PF00903.25	gi|390938830|ref|YP_006402568.1|	-	0.13	12.5	0.0	0.27	11.4	0.0	1.5	1	0	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Phage_integrase	PF00589.22	gi|390938831|ref|YP_006402569.1|	-	6.2e-35	120.5	0.2	9.8e-35	119.9	0.2	1.3	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|390938831|ref|YP_006402569.1|	-	4e-09	36.8	0.0	4.7e-07	30.2	0.0	2.4	1	1	1	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|390938831|ref|YP_006402569.1|	-	6.8e-06	26.3	0.2	0.00026	21.2	0.0	2.8	2	1	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
zinc_ribbon_2	PF13240.6	gi|390938831|ref|YP_006402569.1|	-	0.00015	21.4	0.7	0.00028	20.5	0.7	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|390938831|ref|YP_006402569.1|	-	0.00017	22.3	0.2	0.00033	21.3	0.2	1.5	1	0	0	1	1	1	1	zinc-ribbon	family
DZR	PF12773.7	gi|390938831|ref|YP_006402569.1|	-	0.00095	19.1	0.3	0.0016	18.5	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
UPF0547	PF10571.9	gi|390938831|ref|YP_006402569.1|	-	0.0031	17.5	0.5	0.005	16.9	0.5	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
Phage_int_SAM_3	PF14659.6	gi|390938831|ref|YP_006402569.1|	-	0.012	15.8	0.0	0.069	13.4	0.0	2.2	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
zf-ribbon_3	PF13248.6	gi|390938831|ref|YP_006402569.1|	-	0.035	13.5	0.4	0.058	12.8	0.4	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
Hypoth_Ymh	PF09509.10	gi|390938831|ref|YP_006402569.1|	-	0.12	12.2	0.0	0.37	10.7	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(Hypoth_ymh)
HypA	PF01155.19	gi|390938831|ref|YP_006402569.1|	-	0.12	12.4	0.0	0.22	11.6	0.0	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DHHA1	PF02272.19	gi|390938832|ref|YP_006402570.1|	-	2e-12	47.7	0.1	6e-12	46.2	0.0	1.8	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|390938832|ref|YP_006402570.1|	-	0.002	18.3	0.0	0.004	17.4	0.0	1.4	1	0	0	1	1	1	1	DHH	family
PglD_N	PF17836.1	gi|390938832|ref|YP_006402570.1|	-	0.045	14.4	0.0	0.45	11.2	0.0	2.3	2	0	0	2	2	2	0	PglD	N-terminal	domain
DUF2258	PF10015.9	gi|390938833|ref|YP_006402571.1|	-	1.2e-29	102.3	1.6	1.2e-29	102.3	1.6	1.7	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2258)
EcoR124_C	PF12008.8	gi|390938833|ref|YP_006402571.1|	-	0.0077	15.9	0.2	0.079	12.6	0.0	2.0	2	0	0	2	2	2	1	Type	I	restriction	and	modification	enzyme	-	subunit	R	C	terminal
DUF4795	PF16043.5	gi|390938833|ref|YP_006402571.1|	-	0.034	13.7	0.5	0.034	13.7	0.5	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
60KD_IMP	PF02096.20	gi|390938833|ref|YP_006402571.1|	-	0.19	11.6	0.1	0.28	11.1	0.1	1.2	1	0	0	1	1	1	0	60Kd	inner	membrane	protein
NPHI_C	PF08469.10	gi|390938836|ref|YP_006402574.1|	-	0.037	14.0	0.1	0.072	13.1	0.1	1.5	1	0	0	1	1	1	0	Nucleoside	triphosphatase	I	C-terminal
SecD-TM1	PF13721.6	gi|390938836|ref|YP_006402574.1|	-	0.093	13.2	0.0	0.21	12.0	0.0	1.6	2	0	0	2	2	2	0	SecD	export	protein	N-terminal	TM	region
bact-PGI_C	PF10432.9	gi|390938837|ref|YP_006402575.1|	-	4.7e-35	120.9	0.0	6.6e-35	120.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	phospho-glucose	isomerase	C-terminal	SIS	domain
SIS	PF01380.22	gi|390938837|ref|YP_006402575.1|	-	8.1e-07	29.0	0.0	4.2e-06	26.7	0.0	1.9	2	0	0	2	2	2	1	SIS	domain
PAP2	PF01569.21	gi|390938838|ref|YP_006402576.1|	-	8.1e-16	58.0	5.7	8.1e-16	58.0	5.7	3.1	3	2	0	3	3	3	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|390938838|ref|YP_006402576.1|	-	7.9e-06	25.7	7.1	7.9e-06	25.7	7.1	2.6	2	1	0	2	2	2	1	PAP2	superfamily
PAP2_C	PF14360.6	gi|390938838|ref|YP_006402576.1|	-	0.0056	17.2	0.8	0.0056	17.2	0.8	2.6	2	1	0	2	2	2	1	PAP2	superfamily	C-terminal
DUF1652	PF07865.11	gi|390938838|ref|YP_006402576.1|	-	0.052	13.4	0.0	3.4	7.5	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1652)
UbiA	PF01040.18	gi|390938839|ref|YP_006402577.1|	-	7.4e-34	117.2	12.2	9.9e-34	116.8	12.2	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
PAP2	PF01569.21	gi|390938839|ref|YP_006402577.1|	-	0.0029	17.4	1.3	0.0029	17.4	1.3	2.3	2	1	1	3	3	3	1	PAP2	superfamily
DUF2070	PF09843.9	gi|390938839|ref|YP_006402577.1|	-	9.3	4.4	10.5	0.74	8.0	5.8	1.5	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2070)
HAD_2	PF13419.6	gi|390938840|ref|YP_006402578.1|	-	9e-36	123.6	0.0	1e-35	123.4	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|390938840|ref|YP_006402578.1|	-	2.9e-15	57.1	0.0	2.4e-13	50.9	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|390938840|ref|YP_006402578.1|	-	3.2e-11	44.0	0.0	5.8e-11	43.1	0.0	1.4	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|390938840|ref|YP_006402578.1|	-	1e-10	41.5	0.0	1.6e-10	40.9	0.0	1.3	1	0	0	1	1	1	1	HAD-hyrolase-like
Acid_PPase	PF12689.7	gi|390938840|ref|YP_006402578.1|	-	0.0016	18.3	0.0	0.14	12.0	0.0	2.2	2	0	0	2	2	2	1	Acid	Phosphatase
Put_Phosphatase	PF06888.12	gi|390938840|ref|YP_006402578.1|	-	0.049	13.0	0.0	0.7	9.2	0.0	2.3	2	1	0	2	2	2	0	Putative	Phosphatase
Hydrolase_3	PF08282.12	gi|390938840|ref|YP_006402578.1|	-	0.12	12.1	0.0	3.2	7.4	0.0	2.2	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
DUF3146	PF11344.8	gi|390938840|ref|YP_006402578.1|	-	0.12	12.1	0.0	0.22	11.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3146)
Hydrolase_3	PF08282.12	gi|390938841|ref|YP_006402579.1|	-	5.1e-20	72.3	0.0	6.3e-12	45.8	0.0	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|390938841|ref|YP_006402579.1|	-	3.8e-05	23.3	0.0	0.00019	21.0	0.0	2.0	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
Hydrolase	PF00702.26	gi|390938841|ref|YP_006402579.1|	-	0.0025	18.1	0.0	1.3	9.2	0.0	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|390938841|ref|YP_006402579.1|	-	0.077	13.1	0.0	0.16	12.1	0.0	1.5	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
Imm6	PF14434.6	gi|390938841|ref|YP_006402579.1|	-	0.094	12.7	0.0	0.14	12.1	0.0	1.3	1	0	0	1	1	1	0	Immunity	protein	Imm6
HAD	PF12710.7	gi|390938841|ref|YP_006402579.1|	-	0.58	10.5	5.8	7.2	7.0	0.0	3.4	1	1	3	4	4	4	0	haloacid	dehalogenase-like	hydrolase
Pyr_redox_2	PF07992.14	gi|390938842|ref|YP_006402580.1|	-	8.4e-36	123.7	0.0	1e-35	123.4	0.0	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|390938842|ref|YP_006402580.1|	-	1.9e-11	44.4	1.4	9.6e-06	26.1	0.1	3.6	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|390938842|ref|YP_006402580.1|	-	6.1e-11	42.1	2.5	2.5e-07	30.2	0.2	3.0	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|390938842|ref|YP_006402580.1|	-	1e-09	38.5	1.6	2.9e-08	33.8	0.1	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|390938842|ref|YP_006402580.1|	-	2.1e-08	34.0	0.5	0.0023	17.4	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|390938842|ref|YP_006402580.1|	-	2.3e-07	30.8	2.8	0.0015	18.2	0.3	3.2	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|390938842|ref|YP_006402580.1|	-	9e-07	28.3	0.1	0.0034	16.5	0.0	3.2	3	0	0	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|390938842|ref|YP_006402580.1|	-	2.5e-06	26.5	1.6	0.00073	18.3	0.2	2.6	3	0	0	3	3	3	2	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|390938842|ref|YP_006402580.1|	-	8.5e-05	21.9	0.2	0.24	10.6	0.0	2.6	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
GIDA	PF01134.22	gi|390938842|ref|YP_006402580.1|	-	0.00014	21.1	2.8	0.14	11.2	0.2	2.7	3	0	0	3	3	3	2	Glucose	inhibited	division	protein	A
Shikimate_DH	PF01488.20	gi|390938842|ref|YP_006402580.1|	-	0.00056	20.0	0.3	0.25	11.4	0.1	3.4	4	0	0	4	4	3	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_9	PF13454.6	gi|390938842|ref|YP_006402580.1|	-	0.001	19.1	0.6	0.05	13.6	0.1	3.0	3	0	0	3	3	3	1	FAD-NAD(P)-binding
NAD_binding_7	PF13241.6	gi|390938842|ref|YP_006402580.1|	-	0.0013	19.1	0.0	0.075	13.5	0.0	2.4	2	1	0	2	2	2	1	Putative	NAD(P)-binding
Thi4	PF01946.17	gi|390938842|ref|YP_006402580.1|	-	0.0026	17.0	0.9	0.014	14.6	0.1	2.3	2	0	0	2	2	2	1	Thi4	family
FAD_binding_3	PF01494.19	gi|390938842|ref|YP_006402580.1|	-	0.0032	16.8	0.3	0.007	15.7	0.0	1.6	2	0	0	2	2	2	1	FAD	binding	domain
K_oxygenase	PF13434.6	gi|390938842|ref|YP_006402580.1|	-	0.0044	16.2	0.3	0.23	10.6	0.1	3.0	3	1	1	4	4	4	1	L-lysine	6-monooxygenase	(NADPH-requiring)
DUF498	PF04430.14	gi|390938842|ref|YP_006402580.1|	-	0.0086	16.1	0.0	3.1	7.9	0.0	2.7	3	0	0	3	3	2	1	Protein	of	unknown	function	(DUF498/DUF598)
Amino_oxidase	PF01593.24	gi|390938842|ref|YP_006402580.1|	-	0.052	12.8	0.0	2.1	7.5	0.0	2.2	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
3HCDH_N	PF02737.18	gi|390938842|ref|YP_006402580.1|	-	0.092	12.6	0.1	1.3	8.9	0.0	2.3	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Mur_ligase	PF01225.25	gi|390938842|ref|YP_006402580.1|	-	0.19	12.1	0.6	1.9	8.9	0.1	2.7	3	0	0	3	3	3	0	Mur	ligase	family,	catalytic	domain
MCRA	PF06100.11	gi|390938842|ref|YP_006402580.1|	-	0.19	10.4	0.0	0.39	9.4	0.0	1.4	1	0	0	1	1	1	0	MCRA	family
UDPG_MGDP_dh_N	PF03721.14	gi|390938842|ref|YP_006402580.1|	-	0.54	9.8	2.0	1.8	8.1	0.1	2.7	3	1	0	3	3	3	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Fer4_11	PF13247.6	gi|390938843|ref|YP_006402581.1|	-	1.2e-20	73.5	10.2	1.2e-20	73.5	10.2	1.8	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|390938843|ref|YP_006402581.1|	-	2e-14	53.5	55.4	2e-06	27.9	10.8	3.0	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|390938843|ref|YP_006402581.1|	-	9.3e-13	47.4	39.5	4.1e-06	26.4	3.7	5.7	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|390938843|ref|YP_006402581.1|	-	3e-12	46.1	38.9	1.9e-05	24.5	2.8	4.9	4	2	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390938843|ref|YP_006402581.1|	-	8.5e-12	45.5	51.6	2.7e-06	27.9	12.9	3.8	1	1	3	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|390938843|ref|YP_006402581.1|	-	5.1e-09	36.1	30.6	4.6e-06	26.6	12.2	3.6	1	1	3	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|390938843|ref|YP_006402581.1|	-	1.3e-08	35.2	37.3	0.0039	18.0	3.6	4.4	4	1	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|390938843|ref|YP_006402581.1|	-	2.2e-08	33.7	34.5	9.1e-05	22.3	2.0	4.6	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|390938843|ref|YP_006402581.1|	-	3.6e-07	31.0	27.7	0.012	16.6	1.8	4.8	3	1	1	5	5	5	4	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|390938843|ref|YP_006402581.1|	-	4e-07	30.0	36.2	0.00078	19.8	2.3	4.7	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|390938843|ref|YP_006402581.1|	-	1.4e-05	25.5	27.1	0.012	16.0	9.4	4.1	2	2	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|390938843|ref|YP_006402581.1|	-	2.6e-05	24.7	24.1	0.12	12.9	0.4	4.4	3	2	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|390938843|ref|YP_006402581.1|	-	3.1e-05	24.0	30.7	0.0015	18.6	12.0	3.8	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|390938843|ref|YP_006402581.1|	-	0.23	12.0	0.5	0.23	12.0	0.5	4.4	4	2	1	5	5	4	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|390938843|ref|YP_006402581.1|	-	0.4	10.9	24.5	0.11	12.7	2.9	3.6	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|390938843|ref|YP_006402581.1|	-	0.53	11.1	22.9	0.52	11.1	6.5	3.5	3	2	1	4	4	4	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|390938843|ref|YP_006402581.1|	-	3.5	8.5	22.6	0.87	10.5	1.3	4.0	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
Proton_antipo_M	PF00361.20	gi|390938844|ref|YP_006402582.1|	-	7.1e-34	117.4	22.5	7.1e-34	117.4	22.5	2.3	3	0	0	3	3	3	1	Proton-conducting	membrane	transporter
Proton_antipo_M	PF00361.20	gi|390938845|ref|YP_006402583.1|	-	1.4e-33	116.3	29.3	3e-33	115.3	29.3	1.6	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
DUF810	PF05664.11	gi|390938846|ref|YP_006402584.1|	-	0.1	11.1	0.0	0.11	11.1	0.0	1.0	1	0	0	1	1	1	0	Plant	family	of	unknown	function	(DUF810)
PLAC9	PF15205.6	gi|390938846|ref|YP_006402584.1|	-	0.13	12.7	0.0	0.18	12.2	0.0	1.3	1	0	0	1	1	1	0	Placenta-specific	protein	9
NADHdh	PF00146.21	gi|390938847|ref|YP_006402585.1|	-	3.1e-32	112.1	23.3	4.2e-32	111.7	23.3	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Complex1_49kDa	PF00346.19	gi|390938848|ref|YP_006402586.1|	-	3.3e-64	216.6	0.1	9.1e-48	162.7	0.1	2.2	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|390938848|ref|YP_006402586.1|	-	3.4e-19	69.7	0.0	9.4e-19	68.2	0.0	1.8	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|390938848|ref|YP_006402586.1|	-	5.1e-17	62.0	4.5	2.2e-13	50.0	0.1	3.4	2	2	1	3	3	3	2	Nickel-dependent	hydrogenase
Fer4_7	PF12838.7	gi|390938849|ref|YP_006402587.1|	-	4.6e-15	55.9	37.9	4.3e-10	40.0	10.6	2.6	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|390938849|ref|YP_006402587.1|	-	2e-13	49.5	14.9	5.1e-09	35.6	3.9	3.1	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|390938849|ref|YP_006402587.1|	-	1.5e-10	41.1	6.4	1.5e-10	41.1	6.4	2.2	2	1	1	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|390938849|ref|YP_006402587.1|	-	1.2e-09	38.1	7.7	1.2e-09	38.1	7.7	2.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|390938849|ref|YP_006402587.1|	-	3.1e-09	36.8	10.6	3.1e-09	36.8	10.6	2.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|390938849|ref|YP_006402587.1|	-	7.8e-09	36.3	13.7	0.00042	21.2	5.5	2.7	2	1	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.7	gi|390938849|ref|YP_006402587.1|	-	2.3e-08	33.7	25.8	4.4e-07	29.7	3.6	4.1	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|390938849|ref|YP_006402587.1|	-	1.9e-06	27.6	2.6	1.9e-06	27.6	2.6	3.9	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|390938849|ref|YP_006402587.1|	-	3.9e-05	24.0	15.8	0.012	16.0	3.9	2.7	1	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|390938849|ref|YP_006402587.1|	-	0.00019	21.7	1.4	0.00019	21.7	1.4	3.5	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|390938849|ref|YP_006402587.1|	-	0.0015	19.2	0.3	0.0015	19.2	0.3	2.7	2	1	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.6	gi|390938849|ref|YP_006402587.1|	-	0.0049	17.4	17.6	0.098	13.2	3.6	3.2	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|390938849|ref|YP_006402587.1|	-	0.0075	17.1	9.0	0.0075	17.1	9.0	2.9	4	0	0	4	4	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|390938849|ref|YP_006402587.1|	-	0.013	16.3	12.5	0.029	15.2	0.2	2.7	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|390938849|ref|YP_006402587.1|	-	0.04	14.4	3.8	0.04	14.4	3.8	3.3	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|390938849|ref|YP_006402587.1|	-	0.11	12.8	12.6	0.39	10.9	0.6	2.6	1	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Oxidored_q6	PF01058.22	gi|390938850|ref|YP_006402588.1|	-	6.8e-21	74.5	0.1	8.3e-21	74.2	0.1	1.1	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
GATase_4	PF13230.6	gi|390938851|ref|YP_006402589.1|	-	1.8e-07	30.4	0.0	2.4e-07	29.9	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
GATase_6	PF13522.6	gi|390938851|ref|YP_006402589.1|	-	1.2e-05	25.5	0.0	1.8e-05	24.9	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
NAD_kinase	PF01513.21	gi|390938852|ref|YP_006402590.1|	-	3.4e-49	167.6	0.0	3.8e-49	167.4	0.0	1.0	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|390938852|ref|YP_006402590.1|	-	0.00038	20.1	0.2	0.00094	18.8	0.0	1.8	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
Metallophos	PF00149.28	gi|390938853|ref|YP_006402591.1|	-	2.5e-22	80.4	0.1	3.1e-22	80.1	0.1	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
EntA_Immun	PF08951.10	gi|390938854|ref|YP_006402592.1|	-	0.013	15.8	0.1	0.029	14.7	0.1	1.6	1	1	0	1	1	1	0	Enterocin	A	Immunity
RsbRD_N	PF14361.6	gi|390938854|ref|YP_006402592.1|	-	0.058	14.1	0.0	0.084	13.6	0.0	1.2	1	0	0	1	1	1	0	RsbT	co-antagonist	protein	rsbRD	N-terminal	domain
Nexin_C	PF08628.12	gi|390938854|ref|YP_006402592.1|	-	0.17	12.5	0.0	0.22	12.1	0.0	1.2	1	0	0	1	1	1	0	Sorting	nexin	C	terminal
zf-ribbon_3	PF13248.6	gi|390938855|ref|YP_006402593.1|	-	0.14	11.6	2.3	8.4	6.0	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Thioredoxin	PF00085.20	gi|390938856|ref|YP_006402594.1|	-	0.014	15.4	0.0	0.017	15.1	0.0	1.1	1	0	0	1	1	1	0	Thioredoxin
Cpn60_TCP1	PF00118.24	gi|390938857|ref|YP_006402595.1|	-	7e-181	602.1	14.4	8e-181	601.9	14.4	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
RuvB_C	PF05491.13	gi|390938857|ref|YP_006402595.1|	-	0.089	12.7	0.4	0.38	10.6	0.1	2.2	2	0	0	2	2	2	0	RuvB	C-terminal	winged	helix	domain
RNA_pol_Rpb6	PF01192.22	gi|390938858|ref|YP_006402596.1|	-	1.6e-11	44.0	0.0	2.4e-11	43.4	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
Peptidase_M50	PF02163.22	gi|390938859|ref|YP_006402597.1|	-	1.8e-09	37.3	13.2	1.6e-05	24.3	13.2	3.1	1	1	0	1	1	1	1	Peptidase	family	M50
Topoisom_bac	PF01131.20	gi|390938860|ref|YP_006402598.1|	-	1.7e-112	376.5	0.0	2.1e-112	376.2	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|390938860|ref|YP_006402598.1|	-	2e-14	53.7	0.1	1.1e-13	51.3	0.0	2.4	3	0	0	3	3	3	1	Toprim	domain
Pyrophosphatase	PF00719.19	gi|390938861|ref|YP_006402599.1|	-	1e-58	197.7	0.1	1.2e-58	197.5	0.1	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
DUF1351	PF07083.11	gi|390938862|ref|YP_006402600.1|	-	0.00086	19.1	4.1	0.0011	18.8	4.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1351)
FliJ	PF02050.16	gi|390938862|ref|YP_006402600.1|	-	0.0015	18.8	1.4	0.004	17.4	0.4	1.8	2	0	0	2	2	2	1	Flagellar	FliJ	protein
THOC7	PF05615.13	gi|390938862|ref|YP_006402600.1|	-	0.0053	17.0	1.5	0.025	14.9	0.3	2.0	2	0	0	2	2	2	1	Tho	complex	subunit	7
Sec5	PF15469.6	gi|390938862|ref|YP_006402600.1|	-	0.0097	15.7	3.5	0.025	14.4	3.5	1.7	1	1	0	1	1	1	1	Exocyst	complex	component	Sec5
Prefoldin	PF02996.17	gi|390938862|ref|YP_006402600.1|	-	0.011	15.7	5.1	0.59	10.1	0.1	2.5	2	1	1	3	3	3	0	Prefoldin	subunit
CREPT	PF16566.5	gi|390938862|ref|YP_006402600.1|	-	0.012	15.8	1.1	0.035	14.3	0.7	1.8	2	0	0	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
SOAR	PF16533.5	gi|390938862|ref|YP_006402600.1|	-	0.013	15.4	1.4	0.038	13.9	1.3	1.9	1	1	0	1	1	1	0	STIM1	Orai1-activating	region
HU-CCDC81_bac_2	PF18175.1	gi|390938862|ref|YP_006402600.1|	-	0.02	14.7	0.6	0.091	12.7	0.1	2.2	2	0	0	2	2	2	0	CCDC81-like	prokaryotic	HU	domain	2
Rho_Binding	PF08912.11	gi|390938862|ref|YP_006402600.1|	-	0.024	15.4	1.9	0.11	13.3	1.0	2.0	2	0	0	2	2	2	0	Rho	Binding
PcfJ	PF14284.6	gi|390938862|ref|YP_006402600.1|	-	0.037	13.9	0.9	1.1	9.2	0.4	2.0	1	1	1	2	2	2	0	PcfJ-like	protein
DASH_Duo1	PF08651.10	gi|390938862|ref|YP_006402600.1|	-	0.051	13.4	2.6	4.3	7.2	0.6	2.8	2	1	0	2	2	2	0	DASH	complex	subunit	Duo1
DUF4564	PF15169.6	gi|390938862|ref|YP_006402600.1|	-	0.075	12.7	0.4	0.089	12.5	0.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4564)
Spc7	PF08317.11	gi|390938862|ref|YP_006402600.1|	-	0.092	11.6	5.8	0.28	10.0	2.6	1.8	1	1	0	1	1	1	0	Spc7	kinetochore	protein
DUF1598	PF07643.11	gi|390938862|ref|YP_006402600.1|	-	0.12	12.7	0.1	0.22	11.8	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1598)
ABC_tran_CTD	PF16326.5	gi|390938862|ref|YP_006402600.1|	-	0.16	12.2	7.3	1.2	9.4	0.5	2.2	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
YabA	PF06156.13	gi|390938862|ref|YP_006402600.1|	-	0.24	12.0	1.1	2.6	8.7	0.5	2.0	2	0	0	2	2	2	0	Initiation	control	protein	YabA
Osmo_CC	PF08946.10	gi|390938862|ref|YP_006402600.1|	-	0.74	10.1	4.6	0.51	10.6	0.4	2.4	2	1	0	2	2	2	0	Osmosensory	transporter	coiled	coil
BLOC1_2	PF10046.9	gi|390938862|ref|YP_006402600.1|	-	1.9	8.8	7.8	13	6.1	0.6	2.5	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
CoA_binding	PF02629.19	gi|390938863|ref|YP_006402601.1|	-	5.9e-30	103.8	0.6	1.7e-29	102.4	0.4	1.9	2	0	0	2	2	2	1	CoA	binding	domain
Succ_CoA_lig	PF13607.6	gi|390938863|ref|YP_006402601.1|	-	1.7e-16	60.2	0.0	6.3e-15	55.2	0.0	2.1	2	0	0	2	2	2	1	Succinyl-CoA	ligase	like	flavodoxin	domain
Ligase_CoA	PF00549.19	gi|390938863|ref|YP_006402601.1|	-	2.6e-15	56.6	0.0	4.5e-15	55.8	0.0	1.4	1	0	0	1	1	1	1	CoA-ligase
CoA_binding_2	PF13380.6	gi|390938863|ref|YP_006402601.1|	-	2.6e-07	31.1	0.0	1.2e-05	25.7	0.0	2.3	2	0	0	2	2	2	1	CoA	binding	domain
ATP-grasp_2	PF08442.10	gi|390938864|ref|YP_006402602.1|	-	9.9e-61	204.8	0.4	1.9e-60	203.9	0.1	1.6	2	0	0	2	2	2	1	ATP-grasp	domain
Ligase_CoA	PF00549.19	gi|390938864|ref|YP_006402602.1|	-	2.6e-20	72.8	0.2	4.7e-20	72.0	0.2	1.4	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp_5	PF13549.6	gi|390938864|ref|YP_006402602.1|	-	8.5e-11	41.7	0.3	5.4e-10	39.1	0.3	2.1	1	1	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|390938864|ref|YP_006402602.1|	-	5.4e-06	26.3	0.2	1.1e-05	25.3	0.2	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
Succ_CoA_lig	PF13607.6	gi|390938864|ref|YP_006402602.1|	-	0.0054	16.5	0.0	0.011	15.6	0.0	1.5	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
ATP-grasp	PF02222.22	gi|390938864|ref|YP_006402602.1|	-	0.057	13.0	0.1	0.1	12.2	0.1	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
THB	PF18362.1	gi|390938864|ref|YP_006402602.1|	-	0.26	10.9	1.0	44	3.8	0.1	3.3	3	0	0	3	3	3	0	Tri-helix	bundle	domain
Flavin_Reduct	PF01613.18	gi|390938865|ref|YP_006402603.1|	-	5e-29	101.4	0.0	5.9e-29	101.1	0.0	1.0	1	0	0	1	1	1	1	Flavin	reductase	like	domain
Pribosyltran	PF00156.27	gi|390938866|ref|YP_006402604.1|	-	9.9e-17	60.9	0.0	1.5e-16	60.3	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|390938866|ref|YP_006402604.1|	-	0.12	11.8	0.0	0.17	11.3	0.0	1.2	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
PNP_UDP_1	PF01048.20	gi|390938867|ref|YP_006402605.1|	-	2.6e-48	164.3	0.0	3e-48	164.1	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Acetyltransf_15	PF17013.5	gi|390938868|ref|YP_006402606.1|	-	0.063	12.7	0.3	0.081	12.4	0.3	1.2	1	0	0	1	1	1	0	Putative	acetyl-transferase
Phageshock_PspG	PF09583.10	gi|390938869|ref|YP_006402607.1|	-	5.4	7.4	13.1	0.94	9.8	5.6	2.1	2	0	0	2	2	2	0	Phage	shock	protein	G	(Phageshock_PspG)
DUF4231	PF14015.6	gi|390938869|ref|YP_006402607.1|	-	8	7.0	7.7	1.3	9.5	2.6	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4231)
RimK	PF08443.11	gi|390938870|ref|YP_006402608.1|	-	2.4e-21	76.2	0.0	3.2e-21	75.8	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|390938870|ref|YP_006402608.1|	-	1.1e-07	31.4	0.0	1.7e-07	30.8	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|390938870|ref|YP_006402608.1|	-	2.3e-06	27.8	0.0	5.6e-06	26.5	0.0	1.6	1	1	0	1	1	1	1	ATP-grasp	domain
Ins134_P3_kin	PF05770.11	gi|390938870|ref|YP_006402608.1|	-	3.9e-06	26.5	0.1	0.0022	17.6	0.0	2.2	1	1	1	2	2	2	2	Inositol	1,3,4-trisphosphate	5/6-kinase	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|390938870|ref|YP_006402608.1|	-	0.00011	21.5	0.0	0.15	11.3	0.0	2.3	2	1	0	2	2	2	2	Sugar-transfer	associated	ATP-grasp
ATPgrasp_YheCD	PF14398.6	gi|390938870|ref|YP_006402608.1|	-	0.0027	17.0	0.0	1.1	8.5	0.0	2.3	2	0	0	2	2	2	2	YheC/D	like	ATP-grasp
Terminase_2	PF03592.16	gi|390938871|ref|YP_006402609.1|	-	0.069	13.6	0.1	0.14	12.6	0.1	1.6	1	0	0	1	1	1	0	Terminase	small	subunit
DUF3144	PF11342.8	gi|390938871|ref|YP_006402609.1|	-	0.15	12.4	1.0	0.35	11.2	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3144)
baeRF_family10	PF18854.1	gi|390938871|ref|YP_006402609.1|	-	0.17	12.2	0.1	0.86	9.8	0.0	2.1	2	0	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
Radical_SAM	PF04055.21	gi|390938872|ref|YP_006402610.1|	-	2.8e-14	53.9	0.1	4.1e-14	53.3	0.1	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|390938872|ref|YP_006402610.1|	-	1.5e-05	25.3	0.0	4.7e-05	23.7	0.0	1.7	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|390938872|ref|YP_006402610.1|	-	0.004	17.3	0.0	0.012	15.8	0.0	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
tRNA-synt_1	PF00133.22	gi|390938874|ref|YP_006402612.1|	-	1.6e-111	373.5	0.0	4.9e-110	368.5	0.0	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|390938874|ref|YP_006402612.1|	-	6.5e-31	107.3	1.4	1.3e-30	106.4	1.4	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|390938874|ref|YP_006402612.1|	-	4.3e-26	91.6	2.1	4.1e-13	48.8	0.0	4.2	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|390938874|ref|YP_006402612.1|	-	4.8e-07	29.5	0.0	8.9e-05	22.1	0.0	2.5	1	1	1	2	2	2	2	Leucyl-tRNA	synthetase,	Domain	2
Mut7-C	PF01927.16	gi|390938874|ref|YP_006402612.1|	-	0.014	15.5	1.8	17	5.5	0.0	4.1	2	2	0	2	2	2	0	Mut7-C	RNAse	domain
zf-TFIIB	PF13453.6	gi|390938874|ref|YP_006402612.1|	-	0.15	11.5	2.5	9.6	5.6	0.0	3.5	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
DZR	PF12773.7	gi|390938874|ref|YP_006402612.1|	-	0.16	12.0	2.0	9	6.4	0.2	3.1	3	0	0	3	3	3	0	Double	zinc	ribbon
zf-ACC	PF17848.1	gi|390938874|ref|YP_006402612.1|	-	2.5	8.3	10.2	17	5.6	0.2	4.3	4	0	0	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
PHP_C	PF13263.6	gi|390938875|ref|YP_006402613.1|	-	2.9e-16	59.0	0.1	5e-16	58.2	0.1	1.3	1	0	0	1	1	1	1	PHP-associated
PHP	PF02811.19	gi|390938875|ref|YP_006402613.1|	-	8.9e-07	29.4	0.0	1.1e-06	29.0	0.0	1.2	1	1	0	1	1	1	1	PHP	domain
DZR	PF12773.7	gi|390938876|ref|YP_006402614.1|	-	0.00027	20.9	5.2	0.035	14.1	4.0	2.2	1	1	1	2	2	2	2	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|390938876|ref|YP_006402614.1|	-	0.00046	20.3	2.6	0.015	15.4	0.0	2.2	1	1	0	2	2	2	1	Zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|390938876|ref|YP_006402614.1|	-	0.0041	16.4	4.7	0.62	9.4	0.8	2.4	2	1	0	2	2	2	2	Transcription	factor	zinc-finger
Prok-RING_1	PF14446.6	gi|390938876|ref|YP_006402614.1|	-	0.0052	16.7	2.1	0.45	10.5	0.4	2.3	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	1
Zn_ribbon_SprT	PF17283.2	gi|390938876|ref|YP_006402614.1|	-	0.0074	16.2	10.9	9.7	6.2	1.1	3.3	2	1	1	3	3	3	0	SprT-like	zinc	ribbon	domain
PyrI_C	PF02748.15	gi|390938876|ref|YP_006402614.1|	-	0.0081	16.1	4.6	0.021	14.7	2.9	2.1	2	0	0	2	2	2	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zinc-ribbons_6	PF07191.12	gi|390938876|ref|YP_006402614.1|	-	0.011	15.7	5.3	0.28	11.2	1.2	2.3	1	1	1	2	2	2	0	zinc-ribbons
DUF4428	PF14471.6	gi|390938876|ref|YP_006402614.1|	-	0.017	15.0	2.3	0.017	15.0	2.3	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
zf-ribbon_3	PF13248.6	gi|390938876|ref|YP_006402614.1|	-	0.018	14.4	9.3	0.55	9.7	0.2	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
C1_2	PF03107.16	gi|390938876|ref|YP_006402614.1|	-	0.052	13.9	9.7	0.11	12.8	1.8	2.2	1	1	1	2	2	2	0	C1	domain
PHF5	PF03660.14	gi|390938876|ref|YP_006402614.1|	-	0.069	13.4	4.8	0.18	12.0	1.8	2.2	1	1	1	2	2	2	0	PHF5-like	protein
zf-C6H2	PF15801.5	gi|390938876|ref|YP_006402614.1|	-	0.084	13.2	0.8	0.084	13.2	0.8	2.6	2	1	1	3	3	3	0	zf-MYND-like	zinc	finger,	mRNA-binding
zf-C3HC4_3	PF13920.6	gi|390938876|ref|YP_006402614.1|	-	0.1	12.5	9.1	9.7	6.1	9.4	2.8	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
TF_Zn_Ribbon	PF08271.12	gi|390938876|ref|YP_006402614.1|	-	0.16	11.5	10.2	1.3	8.6	0.8	2.6	2	1	1	3	3	3	0	TFIIB	zinc-binding
HypA	PF01155.19	gi|390938876|ref|YP_006402614.1|	-	0.17	11.9	4.4	0.93	9.5	0.7	2.1	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1272	PF06906.11	gi|390938876|ref|YP_006402614.1|	-	0.22	11.7	6.1	30	4.8	6.1	2.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Rubredoxin	PF00301.20	gi|390938876|ref|YP_006402614.1|	-	0.46	10.5	7.6	13	5.9	0.1	3.1	2	1	0	2	2	2	0	Rubredoxin
PhnA_Zn_Ribbon	PF08274.12	gi|390938876|ref|YP_006402614.1|	-	0.49	10.4	6.5	3.9	7.5	0.2	2.7	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
zf-C2HC5	PF06221.13	gi|390938876|ref|YP_006402614.1|	-	0.51	10.4	6.6	5.9	7.0	3.3	2.4	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
Zn_Tnp_IS1595	PF12760.7	gi|390938876|ref|YP_006402614.1|	-	0.59	10.1	9.0	2.6	8.1	4.9	2.7	1	1	2	3	3	3	0	Transposase	zinc-ribbon	domain
DpnI	PF06044.12	gi|390938876|ref|YP_006402614.1|	-	0.98	9.0	6.6	0.36	10.4	4.4	1.4	1	1	0	1	1	1	0	Dam-replacing	family
zf-FPG_IleRS	PF06827.14	gi|390938876|ref|YP_006402614.1|	-	1.3	9.0	8.0	9.7	6.2	0.0	3.4	4	0	0	4	4	4	0	Zinc	finger	found	in	FPG	and	IleRS
zf-RING_5	PF14634.6	gi|390938876|ref|YP_006402614.1|	-	1.6	8.7	9.2	4.8	7.2	4.6	2.7	1	1	2	3	3	3	0	zinc-RING	finger	domain
zinc_ribbon_10	PF10058.9	gi|390938876|ref|YP_006402614.1|	-	1.8	8.4	10.8	10	5.9	6.4	2.5	1	1	1	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
UPF0547	PF10571.9	gi|390938876|ref|YP_006402614.1|	-	3.3	7.9	9.5	28	4.9	0.1	3.4	3	1	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
zf-LITAF-like	PF10601.9	gi|390938876|ref|YP_006402614.1|	-	6.6	7.1	10.8	4.2e+02	1.3	10.8	2.7	1	1	0	1	1	1	0	LITAF-like	zinc	ribbon	domain
Metallophos	PF00149.28	gi|390938877|ref|YP_006402615.1|	-	1.9e-14	54.7	0.1	2.4e-14	54.4	0.1	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|390938877|ref|YP_006402615.1|	-	2.6e-07	31.0	0.0	9.4e-07	29.2	0.0	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
HD	PF01966.22	gi|390938879|ref|YP_006402617.1|	-	2.8e-12	46.9	1.0	5.2e-12	46.0	0.2	1.8	2	1	0	2	2	2	1	HD	domain
AGOG	PF09171.10	gi|390938880|ref|YP_006402618.1|	-	1.5e-40	139.1	0.0	2.1e-40	138.6	0.0	1.1	1	0	0	1	1	1	1	N-glycosylase/DNA	lyase
Flp_C	PF05202.12	gi|390938880|ref|YP_006402618.1|	-	0.077	12.5	0.1	0.11	12.0	0.1	1.1	1	0	0	1	1	1	0	Recombinase	Flp	protein
Nitro_FeMo-Co	PF02579.17	gi|390938881|ref|YP_006402619.1|	-	4.4e-05	23.7	0.0	5.8e-05	23.3	0.0	1.3	1	1	0	1	1	1	1	Dinitrogenase	iron-molybdenum	cofactor
DUF2283	PF10049.9	gi|390938883|ref|YP_006402621.1|	-	1.5e-11	44.4	0.6	1.8e-11	44.1	0.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2283)
Reductase_C	PF14759.6	gi|390938883|ref|YP_006402621.1|	-	0.2	12.2	0.0	0.27	11.8	0.0	1.2	1	0	0	1	1	1	0	Reductase	C-terminal
SMODS	PF18144.1	gi|390938884|ref|YP_006402622.1|	-	0.13	12.4	0.1	0.15	12.2	0.1	1.1	1	0	0	1	1	1	0	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
Methyltr_RsmB-F	PF01189.17	gi|390938885|ref|YP_006402623.1|	-	6e-38	130.5	0.0	8.1e-38	130.1	0.0	1.1	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
PUA	PF01472.20	gi|390938885|ref|YP_006402623.1|	-	5.2e-07	29.5	0.0	1.1e-06	28.6	0.0	1.5	1	0	0	1	1	1	1	PUA	domain
Methyltransf_31	PF13847.6	gi|390938885|ref|YP_006402623.1|	-	0.0014	18.5	0.0	0.0022	17.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
YedD	PF13987.6	gi|390938885|ref|YP_006402623.1|	-	0.059	13.2	0.0	0.17	11.7	0.0	1.7	1	0	0	1	1	1	0	YedD-like	protein
FtsJ	PF01728.19	gi|390938885|ref|YP_006402623.1|	-	0.059	13.5	0.0	0.1	12.7	0.0	1.4	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_5	PF01795.19	gi|390938885|ref|YP_006402623.1|	-	0.23	10.9	0.0	0.43	10.0	0.0	1.3	1	0	0	1	1	1	0	MraW	methylase	family
PIN_6	PF17146.4	gi|390938886|ref|YP_006402624.1|	-	2e-16	60.3	0.1	2.6e-16	59.9	0.1	1.2	1	0	0	1	1	1	1	PIN	domain	of	ribonuclease
zf-ribbon_3	PF13248.6	gi|390938886|ref|YP_006402624.1|	-	5.3e-06	25.7	4.4	1e-05	24.7	4.4	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|390938886|ref|YP_006402624.1|	-	0.00081	19.5	3.1	0.025	14.7	0.2	2.4	2	0	0	2	2	2	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DZR	PF12773.7	gi|390938886|ref|YP_006402624.1|	-	0.0061	16.6	0.3	0.011	15.8	0.3	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
DNA_ligase_ZBD	PF03119.16	gi|390938886|ref|YP_006402624.1|	-	0.0072	16.3	4.3	0.014	15.4	0.3	2.4	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C4_Topoisom	PF01396.19	gi|390938886|ref|YP_006402624.1|	-	0.066	13.0	2.7	0.44	10.4	0.3	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-C2HC5	PF06221.13	gi|390938886|ref|YP_006402624.1|	-	0.072	13.1	0.2	0.12	12.4	0.2	1.3	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
Zn-ribbon_8	PF09723.10	gi|390938886|ref|YP_006402624.1|	-	0.11	12.6	3.0	2.1	8.5	0.1	2.3	1	1	1	2	2	2	0	Zinc	ribbon	domain
RecR	PF02132.15	gi|390938886|ref|YP_006402624.1|	-	0.14	11.8	0.4	0.26	10.9	0.4	1.5	1	0	0	1	1	1	0	RecR	protein
zinc_ribbon_2	PF13240.6	gi|390938886|ref|YP_006402624.1|	-	0.15	11.8	4.2	6.6	6.6	0.5	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|390938886|ref|YP_006402624.1|	-	0.25	11.3	0.7	0.54	10.2	0.7	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Nudix_N_2	PF14803.6	gi|390938886|ref|YP_006402624.1|	-	0.28	11.1	3.1	8	6.5	0.2	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
zf-FPG_IleRS	PF06827.14	gi|390938886|ref|YP_006402624.1|	-	3.9	7.4	6.1	15	5.6	0.3	2.4	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
NAD_kinase	PF01513.21	gi|390938887|ref|YP_006402625.1|	-	6.2e-23	81.4	0.2	1.6e-22	80.1	0.2	1.6	1	1	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|390938887|ref|YP_006402625.1|	-	0.0043	16.7	0.0	0.0085	15.7	0.0	1.5	1	0	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
Met_10	PF02475.16	gi|390938888|ref|YP_006402626.1|	-	3.7e-40	137.8	0.0	5.1e-40	137.4	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Trm5_N	PF18093.1	gi|390938888|ref|YP_006402626.1|	-	1.1e-09	38.1	1.0	1.1e-09	38.1	1.0	1.9	2	0	0	2	2	2	1	tRNA	methyltransferase	5	N-terminal	domain
PrmA	PF06325.13	gi|390938888|ref|YP_006402626.1|	-	9.1e-06	25.3	0.0	1.3e-05	24.7	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltr_RsmB-F	PF01189.17	gi|390938888|ref|YP_006402626.1|	-	0.0063	16.2	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
DNA_methylase	PF00145.17	gi|390938888|ref|YP_006402626.1|	-	0.063	12.6	0.0	0.1	11.9	0.0	1.3	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
Cons_hypoth95	PF03602.15	gi|390938888|ref|YP_006402626.1|	-	0.12	12.0	0.0	0.3	10.7	0.0	1.6	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
TRM	PF02005.16	gi|390938888|ref|YP_006402626.1|	-	0.16	11.1	0.0	0.29	10.2	0.0	1.4	2	0	0	2	2	2	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
DUF371	PF04027.13	gi|390938889|ref|YP_006402627.1|	-	7.4e-45	152.2	0.0	8.6e-45	152.0	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
PCMT	PF01135.19	gi|390938890|ref|YP_006402628.1|	-	8.4e-69	231.5	0.0	9.5e-69	231.3	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.6	gi|390938890|ref|YP_006402628.1|	-	5.5e-11	42.5	0.0	7.7e-11	42.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|390938890|ref|YP_006402628.1|	-	4.9e-08	33.6	0.0	7.1e-08	33.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|390938890|ref|YP_006402628.1|	-	3.6e-06	27.5	0.0	5.3e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|390938890|ref|YP_006402628.1|	-	6.8e-06	27.1	0.0	1e-05	26.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.10	gi|390938890|ref|YP_006402628.1|	-	1.3e-05	25.0	0.0	1.9e-05	24.5	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
RrnaAD	PF00398.20	gi|390938890|ref|YP_006402628.1|	-	0.00043	19.4	0.0	0.0027	16.8	0.0	1.9	2	0	0	2	2	2	1	Ribosomal	RNA	adenine	dimethylase
Ubie_methyltran	PF01209.18	gi|390938890|ref|YP_006402628.1|	-	0.0016	17.9	0.0	0.0019	17.6	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_32	PF13679.6	gi|390938890|ref|YP_006402628.1|	-	0.0018	18.3	0.1	0.0035	17.4	0.0	1.4	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|390938890|ref|YP_006402628.1|	-	0.0021	17.3	0.0	0.0031	16.7	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_23	PF13489.6	gi|390938890|ref|YP_006402628.1|	-	0.0097	15.8	0.0	0.012	15.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|390938890|ref|YP_006402628.1|	-	0.02	14.8	0.0	0.032	14.1	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
POTRA	PF07244.15	gi|390938890|ref|YP_006402628.1|	-	0.06	13.9	0.0	1	10.0	0.0	2.2	2	0	0	2	2	2	0	Surface	antigen	variable	number	repeat
F420_oxidored	PF03807.17	gi|390938890|ref|YP_006402628.1|	-	0.085	13.5	0.1	0.22	12.1	0.1	1.7	1	1	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
CMAS	PF02353.20	gi|390938890|ref|YP_006402628.1|	-	0.21	10.8	0.0	0.31	10.3	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
XPG_I	PF00867.18	gi|390938891|ref|YP_006402629.1|	-	1.9e-26	92.2	0.0	3.4e-26	91.4	0.0	1.4	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.17	gi|390938891|ref|YP_006402629.1|	-	2.6e-20	72.8	0.0	4.8e-20	71.9	0.0	1.5	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|390938891|ref|YP_006402629.1|	-	0.0023	18.5	2.4	0.0038	17.8	0.1	2.4	2	1	1	3	3	3	1	5'-3'	exonuclease,	C-terminal	SAM	fold
DUF4878	PF12870.7	gi|390938891|ref|YP_006402629.1|	-	0.14	12.5	0.2	0.39	11.0	0.2	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4878)
HTH_20	PF12840.7	gi|390938892|ref|YP_006402630.1|	-	3.2e-05	23.9	0.0	3.8e-05	23.7	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
PadR	PF03551.14	gi|390938892|ref|YP_006402630.1|	-	0.031	14.2	0.1	0.042	13.8	0.1	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DprA_WH	PF17782.1	gi|390938892|ref|YP_006402630.1|	-	0.069	13.3	0.1	0.14	12.3	0.1	1.5	2	0	0	2	2	2	0	DprA	winged	helix	domain
DNAJ_related	PF12339.8	gi|390938892|ref|YP_006402630.1|	-	0.11	12.7	0.0	0.14	12.4	0.0	1.2	1	0	0	1	1	1	0	DNA-J	related	protein
FUR	PF01475.19	gi|390938892|ref|YP_006402630.1|	-	0.16	12.1	0.0	0.2	11.8	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
AAA	PF00004.29	gi|390938893|ref|YP_006402631.1|	-	3.7e-99	328.3	0.0	1.1e-49	168.2	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|390938893|ref|YP_006402631.1|	-	7.7e-32	108.9	0.0	5.4e-15	54.9	0.0	2.6	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|390938893|ref|YP_006402631.1|	-	9.9e-22	76.9	0.2	2.9e-21	75.4	0.2	1.8	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.12	gi|390938893|ref|YP_006402631.1|	-	1.1e-16	60.9	0.1	3.2e-07	30.2	0.0	4.0	5	0	0	5	5	3	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|390938893|ref|YP_006402631.1|	-	1.5e-15	58.0	0.1	1.1e-06	29.1	0.0	3.8	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|390938893|ref|YP_006402631.1|	-	7e-14	52.3	0.0	8.2e-08	32.5	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.14	gi|390938893|ref|YP_006402631.1|	-	2.1e-13	50.4	0.8	4.2e-06	26.8	0.1	3.7	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
TIP49	PF06068.13	gi|390938893|ref|YP_006402631.1|	-	2.3e-11	43.5	0.3	0.00016	21.0	0.0	2.7	3	0	0	3	3	2	2	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|390938893|ref|YP_006402631.1|	-	9e-11	42.1	0.0	5e-05	23.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|390938893|ref|YP_006402631.1|	-	1.1e-10	41.9	1.0	0.00034	20.9	0.1	4.0	2	2	0	3	3	3	2	AAA	domain
AAA_14	PF13173.6	gi|390938893|ref|YP_006402631.1|	-	4.2e-10	39.8	0.0	0.00068	19.7	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|390938893|ref|YP_006402631.1|	-	1.1e-08	35.7	0.0	0.0042	17.6	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|390938893|ref|YP_006402631.1|	-	2e-08	34.6	0.0	0.0032	17.9	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
AAA_28	PF13521.6	gi|390938893|ref|YP_006402631.1|	-	5.8e-08	33.2	0.0	0.0027	17.9	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|390938893|ref|YP_006402631.1|	-	1.2e-07	31.6	0.1	0.0075	16.0	0.0	2.6	3	0	0	3	3	2	2	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|390938893|ref|YP_006402631.1|	-	1.7e-07	30.9	0.2	0.016	14.6	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
ATPase_2	PF01637.18	gi|390938893|ref|YP_006402631.1|	-	3.1e-07	30.6	2.3	0.27	11.1	0.0	3.9	2	2	2	4	4	4	2	ATPase	domain	predominantly	from	Archaea
DUF815	PF05673.13	gi|390938893|ref|YP_006402631.1|	-	6.3e-07	28.8	0.0	0.034	13.3	0.0	2.7	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
AAA_24	PF13479.6	gi|390938893|ref|YP_006402631.1|	-	9.8e-07	28.7	0.1	0.01	15.6	0.0	2.6	2	1	0	2	2	2	2	AAA	domain
TsaE	PF02367.17	gi|390938893|ref|YP_006402631.1|	-	1.1e-06	28.7	0.0	0.069	13.2	0.0	3.0	3	0	0	3	3	3	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ABC_tran	PF00005.27	gi|390938893|ref|YP_006402631.1|	-	4.1e-06	27.3	0.0	0.092	13.3	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
ATPase	PF06745.13	gi|390938893|ref|YP_006402631.1|	-	4.1e-06	26.3	0.5	0.26	10.6	0.0	3.4	2	1	1	3	3	3	2	KaiC
CDC48_2	PF02933.17	gi|390938893|ref|YP_006402631.1|	-	6.3e-06	25.9	0.0	1.6e-05	24.6	0.0	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
Sigma54_activat	PF00158.26	gi|390938893|ref|YP_006402631.1|	-	8.9e-06	25.5	0.0	0.1	12.3	0.0	3.1	2	1	0	2	2	2	2	Sigma-54	interaction	domain
Zeta_toxin	PF06414.12	gi|390938893|ref|YP_006402631.1|	-	1e-05	25.0	0.0	0.12	11.6	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
AAA_3	PF07726.11	gi|390938893|ref|YP_006402631.1|	-	1.1e-05	25.3	0.0	0.066	13.1	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Parvo_NS1	PF01057.17	gi|390938893|ref|YP_006402631.1|	-	1.6e-05	24.2	0.1	0.021	13.9	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_7	PF12775.7	gi|390938893|ref|YP_006402631.1|	-	1.8e-05	24.4	0.0	0.032	13.7	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|390938893|ref|YP_006402631.1|	-	1.8e-05	24.7	0.2	0.25	11.2	0.0	3.2	4	0	0	4	4	3	2	NACHT	domain
Bac_DnaA	PF00308.18	gi|390938893|ref|YP_006402631.1|	-	2.6e-05	24.2	0.0	0.013	15.4	0.0	2.6	2	1	0	2	2	2	1	Bacterial	dnaA	protein
Rad17	PF03215.15	gi|390938893|ref|YP_006402631.1|	-	3.3e-05	23.9	0.0	0.21	11.5	0.0	3.2	2	1	1	3	3	3	1	Rad17	P-loop	domain
AAA_25	PF13481.6	gi|390938893|ref|YP_006402631.1|	-	0.00023	20.8	7.3	0.42	10.2	0.1	4.1	2	2	1	4	4	4	2	AAA	domain
AAA_17	PF13207.6	gi|390938893|ref|YP_006402631.1|	-	0.00027	21.4	0.0	1.3	9.5	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.16	gi|390938893|ref|YP_006402631.1|	-	0.00034	20.1	0.3	0.68	9.4	0.0	2.3	2	0	0	2	2	2	2	PhoH-like	protein
DUF2075	PF09848.9	gi|390938893|ref|YP_006402631.1|	-	0.00062	19.1	0.0	0.047	12.9	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
NB-ARC	PF00931.22	gi|390938893|ref|YP_006402631.1|	-	0.0011	18.2	0.0	1.1	8.3	0.0	2.4	2	0	0	2	2	2	2	NB-ARC	domain
AAA_19	PF13245.6	gi|390938893|ref|YP_006402631.1|	-	0.0028	18.0	0.9	3.9	7.8	0.1	3.3	2	1	1	3	3	3	0	AAA	domain
AAA_11	PF13086.6	gi|390938893|ref|YP_006402631.1|	-	0.003	17.4	0.0	0.5	10.1	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Sigma54_activ_2	PF14532.6	gi|390938893|ref|YP_006402631.1|	-	0.0036	17.4	0.0	4	7.5	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Viral_helicase1	PF01443.18	gi|390938893|ref|YP_006402631.1|	-	0.0042	16.9	0.0	1.5	8.5	0.0	2.2	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
Vps4_C	PF09336.10	gi|390938893|ref|YP_006402631.1|	-	0.0044	17.0	0.0	0.28	11.2	0.0	2.6	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
NTPase_1	PF03266.15	gi|390938893|ref|YP_006402631.1|	-	0.0059	16.5	0.2	3.2	7.6	0.1	3.4	2	1	0	2	2	2	0	NTPase
AAA_30	PF13604.6	gi|390938893|ref|YP_006402631.1|	-	0.0084	15.8	0.1	1.7	8.3	0.0	2.9	2	0	0	2	2	2	1	AAA	domain
SKI	PF01202.22	gi|390938893|ref|YP_006402631.1|	-	0.0092	16.1	0.0	4.7	7.3	0.0	2.4	2	0	0	2	2	2	0	Shikimate	kinase
PduV-EutP	PF10662.9	gi|390938893|ref|YP_006402631.1|	-	0.01	15.6	0.0	2.5	7.8	0.0	2.4	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AFG1_ATPase	PF03969.16	gi|390938893|ref|YP_006402631.1|	-	0.012	14.5	0.4	1.2	7.9	0.1	2.3	2	1	0	2	2	2	0	AFG1-like	ATPase
T2SSE	PF00437.20	gi|390938893|ref|YP_006402631.1|	-	0.019	14.0	0.0	0.19	10.8	0.0	2.2	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
UFD1	PF03152.14	gi|390938893|ref|YP_006402631.1|	-	0.022	14.3	0.0	0.041	13.4	0.0	1.4	1	0	0	1	1	1	0	Ubiquitin	fusion	degradation	protein	UFD1
Guanylate_kin	PF00625.21	gi|390938893|ref|YP_006402631.1|	-	0.024	14.4	0.1	22	4.7	0.0	3.8	2	2	2	4	4	4	0	Guanylate	kinase
Cytidylate_kin	PF02224.18	gi|390938893|ref|YP_006402631.1|	-	0.038	13.7	0.1	4.4	7.0	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase
SRPRB	PF09439.10	gi|390938893|ref|YP_006402631.1|	-	0.038	13.4	0.0	7.6	5.9	0.0	2.5	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
IPT	PF01745.16	gi|390938893|ref|YP_006402631.1|	-	0.072	12.5	0.0	7.6	5.8	0.0	2.3	2	0	0	2	2	2	0	Isopentenyl	transferase
Cytidylate_kin2	PF13189.6	gi|390938893|ref|YP_006402631.1|	-	0.074	13.2	0.0	7.2	6.7	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
KAP_NTPase	PF07693.14	gi|390938893|ref|YP_006402631.1|	-	0.076	12.2	0.1	34	3.5	0.1	3.0	2	1	1	3	3	3	0	KAP	family	P-loop	domain
ATP-synt_ab	PF00006.25	gi|390938893|ref|YP_006402631.1|	-	0.086	12.5	0.0	10	5.7	0.0	2.3	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DAP3	PF10236.9	gi|390938893|ref|YP_006402631.1|	-	0.096	11.8	0.0	11	5.1	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
ResIII	PF04851.15	gi|390938893|ref|YP_006402631.1|	-	0.12	12.4	0.0	4.2	7.3	0.0	2.6	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
PSI_PsaE	PF02427.17	gi|390938893|ref|YP_006402631.1|	-	0.16	11.7	0.1	0.67	9.7	0.2	1.9	2	0	0	2	2	1	0	Photosystem	I	reaction	centre	subunit	IV	/	PsaE
AAA_6	PF12774.7	gi|390938893|ref|YP_006402631.1|	-	0.2	10.6	0.1	0.95	8.4	0.0	1.9	2	0	0	2	2	2	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
HTH_45	PF14947.6	gi|390938894|ref|YP_006402632.1|	-	2.2e-05	24.3	0.2	2.7e-05	24.1	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
ABC_tran	PF00005.27	gi|390938895|ref|YP_006402633.1|	-	2.6e-34	118.7	0.0	3.8e-34	118.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938895|ref|YP_006402633.1|	-	9e-07	29.0	0.1	0.018	14.9	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_2	PF08402.10	gi|390938895|ref|YP_006402633.1|	-	7.9e-05	22.7	0.0	0.00017	21.7	0.0	1.6	1	0	0	1	1	1	1	TOBE	domain
TOBE	PF03459.17	gi|390938895|ref|YP_006402633.1|	-	0.00023	21.4	0.1	0.00051	20.3	0.1	1.6	1	0	0	1	1	1	1	TOBE	domain
SMC_N	PF02463.19	gi|390938895|ref|YP_006402633.1|	-	0.00065	19.2	0.1	0.011	15.2	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Rad17	PF03215.15	gi|390938895|ref|YP_006402633.1|	-	0.0096	15.9	0.0	0.016	15.2	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|390938895|ref|YP_006402633.1|	-	0.032	14.5	0.1	0.07	13.4	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
sCache_3_2	PF17203.4	gi|390938895|ref|YP_006402633.1|	-	0.036	14.2	0.0	0.12	12.4	0.0	1.8	2	0	0	2	2	2	0	Single	cache	domain	3
AAA_29	PF13555.6	gi|390938895|ref|YP_006402633.1|	-	0.093	12.5	0.0	0.19	11.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|390938895|ref|YP_006402633.1|	-	0.097	13.1	0.0	0.22	11.9	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|390938895|ref|YP_006402633.1|	-	0.14	12.1	0.2	0.37	10.7	0.0	1.7	2	0	0	2	2	2	0	RsgA	GTPase
AAA_23	PF13476.6	gi|390938895|ref|YP_006402633.1|	-	0.14	12.6	0.1	0.29	11.6	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|390938895|ref|YP_006402633.1|	-	0.15	12.5	0.0	0.31	11.4	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
2-Hacid_dh_C	PF02826.19	gi|390938896|ref|YP_006402634.1|	-	3.2e-66	222.1	0.0	4.1e-66	221.7	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|390938896|ref|YP_006402634.1|	-	8.7e-34	116.1	0.0	1e-33	115.8	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|390938896|ref|YP_006402634.1|	-	2.1e-06	28.0	0.0	3.8e-06	27.1	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AdoHcyase_NAD	PF00670.21	gi|390938896|ref|YP_006402634.1|	-	2.8e-05	24.2	0.0	5.8e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
IlvN	PF07991.12	gi|390938896|ref|YP_006402634.1|	-	9.4e-05	22.0	0.0	0.00016	21.3	0.0	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_7	PF13241.6	gi|390938896|ref|YP_006402634.1|	-	0.012	16.0	0.0	0.028	14.9	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
XdhC_C	PF13478.6	gi|390938896|ref|YP_006402634.1|	-	0.077	13.5	0.0	0.24	11.9	0.0	1.9	2	0	0	2	2	2	0	XdhC	Rossmann	domain
DUF4440	PF14534.6	gi|390938896|ref|YP_006402634.1|	-	0.087	13.2	0.0	0.2	12.1	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4440)
Herpes_IE1	PF07340.11	gi|390938896|ref|YP_006402634.1|	-	0.11	11.3	0.0	0.17	10.8	0.0	1.3	1	0	0	1	1	1	0	Cytomegalovirus	IE1	protein
KH_5	PF13184.6	gi|390938897|ref|YP_006402635.1|	-	1.3e-05	25.2	0.1	2.2e-05	24.4	0.1	1.5	1	0	0	1	1	1	1	NusA-like	KH	domain
GvpK	PF05121.12	gi|390938897|ref|YP_006402635.1|	-	0.032	14.3	0.1	0.11	12.5	0.0	1.9	2	0	0	2	2	2	0	Gas	vesicle	protein	K
SKI	PF01202.22	gi|390938897|ref|YP_006402635.1|	-	0.034	14.3	0.1	0.051	13.7	0.1	1.2	1	0	0	1	1	1	0	Shikimate	kinase
TruD	PF01142.18	gi|390938898|ref|YP_006402636.1|	-	3.3e-45	154.7	0.2	1.2e-36	126.5	0.3	3.0	1	1	1	2	2	2	2	tRNA	pseudouridine	synthase	D	(TruD)
PTH2	PF01981.16	gi|390938899|ref|YP_006402637.1|	-	6.4e-42	142.5	0.0	7.1e-42	142.4	0.0	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
NAD_binding_10	PF13460.6	gi|390938899|ref|YP_006402637.1|	-	0.017	15.0	0.0	0.021	14.7	0.0	1.1	1	0	0	1	1	1	0	NAD(P)H-binding
DUF1102	PF06510.11	gi|390938899|ref|YP_006402637.1|	-	0.15	12.2	0.0	0.18	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1102)
DUF1610	PF07754.11	gi|390938900|ref|YP_006402638.1|	-	5.9e-08	32.5	10.1	1.3e-05	25.0	2.6	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
DZR	PF12773.7	gi|390938900|ref|YP_006402638.1|	-	0.00014	21.8	11.5	0.0022	18.0	12.1	2.3	1	1	1	2	2	2	2	Double	zinc	ribbon
zf-CHY	PF05495.12	gi|390938900|ref|YP_006402638.1|	-	0.0017	18.8	8.7	0.0046	17.4	8.8	1.6	1	1	0	1	1	1	1	CHY	zinc	finger
HypA	PF01155.19	gi|390938900|ref|YP_006402638.1|	-	0.0049	16.9	7.4	0.038	14.0	0.1	2.0	1	1	1	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1272	PF06906.11	gi|390938900|ref|YP_006402638.1|	-	0.0055	16.8	11.2	0.085	13.0	2.1	2.8	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF1272)
OrfB_Zn_ribbon	PF07282.11	gi|390938900|ref|YP_006402638.1|	-	0.0082	16.0	7.9	0.044	13.7	0.2	2.3	1	1	1	2	2	2	2	Putative	transposase	DNA-binding	domain
zf-RING_7	PF02591.15	gi|390938900|ref|YP_006402638.1|	-	0.009	16.2	14.2	1.6	9.0	0.1	3.3	3	1	0	3	3	3	2	C4-type	zinc	ribbon	domain
His_Me_b4a2	PF18275.1	gi|390938900|ref|YP_006402638.1|	-	0.014	15.5	0.8	0.023	14.8	0.8	1.3	1	0	0	1	1	1	0	His-Me	finger	endonuclease	beta4-alpha2	domain
PSCyt3	PF07627.11	gi|390938900|ref|YP_006402638.1|	-	0.022	15.0	0.1	0.022	15.0	0.1	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1588)
tRNA-synt_1f	PF01921.18	gi|390938900|ref|YP_006402638.1|	-	0.023	13.6	1.7	0.028	13.3	1.7	1.3	1	1	0	1	1	1	0	tRNA	synthetases	class	I	(K)
zf-ribbon_3	PF13248.6	gi|390938900|ref|YP_006402638.1|	-	0.031	13.7	17.7	0.1	12.0	4.1	3.4	3	1	0	3	3	3	0	zinc-ribbon	domain
Nop10p	PF04135.12	gi|390938900|ref|YP_006402638.1|	-	0.037	14.1	8.5	0.7	10.0	2.9	2.7	1	1	2	3	3	3	0	Nucleolar	RNA-binding	protein,	Nop10p	family
DUF2321	PF10083.9	gi|390938900|ref|YP_006402638.1|	-	0.038	13.6	5.1	0.057	13.1	5.1	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
DUF1258	PF06869.12	gi|390938900|ref|YP_006402638.1|	-	0.041	13.4	3.1	0.046	13.2	3.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1258)
PolC_DP2	PF03833.13	gi|390938900|ref|YP_006402638.1|	-	0.063	11.1	3.1	0.061	11.2	3.1	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
DUF2752	PF10825.8	gi|390938900|ref|YP_006402638.1|	-	0.067	13.3	1.9	9.1	6.4	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2752)
DUF35_N	PF12172.8	gi|390938900|ref|YP_006402638.1|	-	0.07	13.0	2.7	0.07	13.0	2.7	3.1	2	1	1	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Mu-like_Com	PF10122.9	gi|390938900|ref|YP_006402638.1|	-	0.095	12.2	0.2	0.095	12.2	0.2	2.8	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
zinc_ribbon_4	PF13717.6	gi|390938900|ref|YP_006402638.1|	-	0.1	12.6	11.3	7.1	6.6	0.0	4.0	4	0	0	4	4	4	0	zinc-ribbon	domain
Acetone_carb_G	PF08882.11	gi|390938900|ref|YP_006402638.1|	-	0.11	12.7	6.0	1.5	9.0	0.8	2.3	1	1	1	2	2	2	0	Acetone	carboxylase	gamma	subunit
ADK_lid	PF05191.14	gi|390938900|ref|YP_006402638.1|	-	0.12	12.4	8.3	7.8	6.6	0.3	3.7	3	1	1	4	4	4	0	Adenylate	kinase,	active	site	lid
DpnI	PF06044.12	gi|390938900|ref|YP_006402638.1|	-	0.16	11.6	4.0	0.19	11.3	4.0	1.2	1	0	0	1	1	1	0	Dam-replacing	family
zf-Mss51	PF13824.6	gi|390938900|ref|YP_006402638.1|	-	0.3	11.2	9.3	2.9	8.1	1.9	2.3	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zinc_ribbon_10	PF10058.9	gi|390938900|ref|YP_006402638.1|	-	0.37	10.5	16.6	1.3	8.8	3.5	3.6	2	2	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-RING_5	PF14634.6	gi|390938900|ref|YP_006402638.1|	-	0.4	10.7	10.2	1.3	9.0	0.7	2.3	2	0	0	2	2	2	0	zinc-RING	finger	domain
Rpr2	PF04032.16	gi|390938900|ref|YP_006402638.1|	-	0.5	10.7	9.9	5	7.5	0.0	3.2	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
NOB1_Zn_bind	PF08772.11	gi|390938900|ref|YP_006402638.1|	-	1.1	9.5	10.0	0.28	11.4	2.1	2.2	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Zn-ribbon_8	PF09723.10	gi|390938900|ref|YP_006402638.1|	-	1.2	9.3	17.3	26	5.0	0.2	3.8	2	1	0	2	2	2	0	Zinc	ribbon	domain
C1_2	PF03107.16	gi|390938900|ref|YP_006402638.1|	-	1.4	9.3	11.3	2	8.8	2.6	2.2	1	1	1	2	2	2	0	C1	domain
DUF2072	PF09845.9	gi|390938900|ref|YP_006402638.1|	-	1.5	9.1	10.2	0.2	11.9	1.4	2.2	1	1	1	2	2	2	0	Zn-ribbon	containing	protein
zf-LITAF-like	PF10601.9	gi|390938900|ref|YP_006402638.1|	-	1.8	8.9	14.8	0.83	10.0	0.8	3.6	1	1	3	4	4	4	0	LITAF-like	zinc	ribbon	domain
zf-HIT	PF04438.16	gi|390938900|ref|YP_006402638.1|	-	2	8.3	16.6	0.54	10.2	6.0	2.9	2	1	0	2	2	2	0	HIT	zinc	finger
zinc_ribbon_2	PF13240.6	gi|390938900|ref|YP_006402638.1|	-	2.2	8.1	21.5	8.4e+02	-0.1	0.1	3.7	2	1	0	2	2	2	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|390938900|ref|YP_006402638.1|	-	2.5	7.7	15.5	8.5	6.1	0.3	4.0	2	1	2	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
Dynactin_p62	PF05502.13	gi|390938900|ref|YP_006402638.1|	-	2.8	6.6	7.8	3.1	6.5	7.8	1.2	1	0	0	1	1	1	0	Dynactin	p62	family
zf-B_box	PF00643.24	gi|390938900|ref|YP_006402638.1|	-	3.1	8.0	13.9	3.5	7.9	7.2	2.6	1	1	0	2	2	2	0	B-box	zinc	finger
zf-MYND	PF01753.18	gi|390938900|ref|YP_006402638.1|	-	3.8	7.7	11.1	1e+02	3.1	11.1	2.5	1	1	0	1	1	1	0	MYND	finger
zf_Rg	PF17915.1	gi|390938900|ref|YP_006402638.1|	-	4.9	6.6	15.8	0.56	9.6	1.6	3.2	2	1	1	3	3	3	0	Reverse	gyrase	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|390938900|ref|YP_006402638.1|	-	5.6	6.6	18.8	2	8.0	3.8	3.4	1	1	2	3	3	3	0	TFIIB	zinc-binding
Sgf11	PF08209.11	gi|390938900|ref|YP_006402638.1|	-	5.9	6.6	16.6	1.7	8.2	0.1	3.8	3	1	1	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
zf-AN1	PF01428.16	gi|390938900|ref|YP_006402638.1|	-	6.6	7.0	13.7	7.4	6.8	3.7	2.9	1	1	2	3	3	3	0	AN1-like	Zinc	finger
Nudix_N_2	PF14803.6	gi|390938900|ref|YP_006402638.1|	-	8.7	6.4	14.5	1.5e+02	2.4	0.1	3.7	2	1	0	2	2	2	0	Nudix	N-terminal
EF1_GNE	PF00736.19	gi|390938901|ref|YP_006402639.1|	-	8.6e-20	70.7	0.0	9.6e-20	70.6	0.0	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
TrkA_N	PF02254.18	gi|390938902|ref|YP_006402640.1|	-	3.7e-16	59.4	1.2	5.7e-16	58.8	1.2	1.3	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|390938902|ref|YP_006402640.1|	-	0.00033	21.1	0.0	0.00056	20.3	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
F420_oxidored	PF03807.17	gi|390938902|ref|YP_006402640.1|	-	0.0084	16.7	0.2	0.059	14.0	0.0	2.4	3	0	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|390938902|ref|YP_006402640.1|	-	0.009	16.3	0.0	0.082	13.2	0.1	2.0	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
TrkA_C	PF02080.21	gi|390938902|ref|YP_006402640.1|	-	0.0097	15.7	0.2	0.0097	15.7	0.2	1.8	2	0	0	2	2	2	1	TrkA-C	domain
GFO_IDH_MocA	PF01408.22	gi|390938902|ref|YP_006402640.1|	-	0.13	13.1	0.0	0.21	12.4	0.0	1.3	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
MS_channel	PF00924.18	gi|390938903|ref|YP_006402641.1|	-	0.00016	21.3	2.1	0.00016	21.3	2.1	2.3	1	1	2	3	3	3	1	Mechanosensitive	ion	channel
UPF0004	PF00919.20	gi|390938904|ref|YP_006402642.1|	-	5.7e-22	77.6	0.1	1.1e-21	76.7	0.1	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
Radical_SAM	PF04055.21	gi|390938904|ref|YP_006402642.1|	-	1.7e-20	74.1	0.2	8e-20	71.9	0.1	2.1	2	0	0	2	2	2	1	Radical	SAM	superfamily
TRAM	PF01938.20	gi|390938904|ref|YP_006402642.1|	-	0.0045	17.0	0.0	0.024	14.6	0.0	2.1	2	0	0	2	2	2	1	TRAM	domain
Polysacc_deac_2	PF04748.13	gi|390938904|ref|YP_006402642.1|	-	0.072	12.3	0.0	0.2	10.9	0.0	1.7	2	0	0	2	2	2	0	Divergent	polysaccharide	deacetylase
eIF-5_eIF-2B	PF01873.17	gi|390938905|ref|YP_006402643.1|	-	1.4e-33	115.3	0.0	1.7e-33	115.0	0.0	1.0	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
HypA	PF01155.19	gi|390938905|ref|YP_006402643.1|	-	0.01	15.9	0.1	0.013	15.5	0.1	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS1595	PF12760.7	gi|390938905|ref|YP_006402643.1|	-	0.016	15.1	0.4	0.028	14.4	0.4	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Elf1	PF05129.13	gi|390938905|ref|YP_006402643.1|	-	0.021	14.8	0.4	0.034	14.2	0.4	1.3	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-ribbon_3	PF13248.6	gi|390938905|ref|YP_006402643.1|	-	0.042	13.3	0.4	4	7.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|390938905|ref|YP_006402643.1|	-	0.042	13.8	1.4	0.075	13.0	1.4	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|390938905|ref|YP_006402643.1|	-	0.095	12.8	1.6	0.32	11.2	1.6	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|390938905|ref|YP_006402643.1|	-	0.13	12.1	2.3	10	5.9	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DUF678	PF05077.12	gi|390938905|ref|YP_006402643.1|	-	0.16	12.1	2.2	10	6.3	0.1	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF678)
DUF35_N	PF12172.8	gi|390938905|ref|YP_006402643.1|	-	0.22	11.4	2.3	6.2	6.8	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Lar_restr_allev	PF14354.6	gi|390938905|ref|YP_006402643.1|	-	0.25	11.8	0.9	1.6	9.2	0.9	2.1	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
CpXC	PF14353.6	gi|390938905|ref|YP_006402643.1|	-	0.33	11.0	1.5	2	8.5	0.1	2.2	1	1	1	2	2	2	0	CpXC	protein
Zn_ribbon_recom	PF13408.6	gi|390938905|ref|YP_006402643.1|	-	1.2	9.8	4.3	2	9.0	2.9	2.1	2	1	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|390938905|ref|YP_006402643.1|	-	2	8.4	5.0	17	5.5	0.6	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF424	PF04242.13	gi|390938906|ref|YP_006402644.1|	-	7.4e-21	74.2	0.1	9e-21	73.9	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
NMD3	PF04981.13	gi|390938907|ref|YP_006402645.1|	-	1.6e-40	139.1	0.7	2e-40	138.8	0.7	1.1	1	0	0	1	1	1	1	NMD3	family
FBA_3	PF08268.12	gi|390938907|ref|YP_006402645.1|	-	0.036	14.0	0.0	0.069	13.1	0.0	1.4	1	0	0	1	1	1	0	F-box	associated	domain
DZR	PF12773.7	gi|390938907|ref|YP_006402645.1|	-	0.2	11.7	6.7	1.8	8.6	4.1	2.8	2	1	0	2	2	2	0	Double	zinc	ribbon
MazE_antitoxin	PF04014.18	gi|390938907|ref|YP_006402645.1|	-	0.6	10.1	0.0	0.6	10.1	0.0	3.1	3	0	0	3	3	3	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF35_N	PF12172.8	gi|390938907|ref|YP_006402645.1|	-	0.74	9.8	5.9	1.1	9.2	0.0	3.0	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Prok-RING_1	PF14446.6	gi|390938907|ref|YP_006402645.1|	-	1.1	9.2	9.7	1.6	8.7	0.7	2.6	2	1	1	3	3	3	0	Prokaryotic	RING	finger	family	1
GFA	PF04828.14	gi|390938907|ref|YP_006402645.1|	-	1.2	9.5	4.3	26	5.3	0.2	3.3	2	1	1	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf_C2H2_13	PF18508.1	gi|390938907|ref|YP_006402645.1|	-	2.2	7.9	6.7	18	5.0	0.3	3.2	3	0	0	3	3	3	0	Zinc	finger	domain
zf-ribbon_3	PF13248.6	gi|390938907|ref|YP_006402645.1|	-	2.8	7.5	6.3	4.9	6.7	0.2	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
CxC4	PF18717.1	gi|390938907|ref|YP_006402645.1|	-	3.6	7.4	5.2	13	5.7	0.2	2.2	2	0	0	2	2	2	0	CxC4	like	cysteine	cluster	associated	with	KDZ	transposases
C1_1	PF00130.22	gi|390938907|ref|YP_006402645.1|	-	6.5	6.7	7.1	0.6	10.0	0.9	2.3	3	0	0	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Zn-ribbon_8	PF09723.10	gi|390938907|ref|YP_006402645.1|	-	7.2	6.8	8.0	24	5.2	5.0	2.8	2	1	0	2	2	2	0	Zinc	ribbon	domain
eIF-1a	PF01176.19	gi|390938908|ref|YP_006402646.1|	-	7.9e-17	60.8	0.4	1e-16	60.4	0.4	1.2	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
RIO1	PF01163.22	gi|390938909|ref|YP_006402647.1|	-	3.6e-60	202.8	0.0	5e-60	202.3	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|390938909|ref|YP_006402647.1|	-	4.7e-06	26.7	0.1	0.0061	16.5	0.0	2.4	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|390938909|ref|YP_006402647.1|	-	0.00024	20.5	0.1	0.0025	17.2	0.0	2.2	2	0	0	2	2	2	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.25	gi|390938909|ref|YP_006402647.1|	-	0.013	14.9	0.2	0.027	13.8	0.2	1.6	1	1	0	1	1	1	0	Protein	kinase	domain
Pkinase_fungal	PF17667.1	gi|390938909|ref|YP_006402647.1|	-	0.036	12.9	0.1	0.052	12.3	0.1	1.2	1	0	0	1	1	1	0	Fungal	protein	kinase
KH_1	PF00013.29	gi|390938910|ref|YP_006402648.1|	-	2.1e-07	30.7	0.1	0.0032	17.2	0.0	2.3	2	0	0	2	2	2	2	KH	domain
FIST_C	PF10442.9	gi|390938910|ref|YP_006402648.1|	-	0.15	12.0	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	FIST	C	domain
TnsD	PF15978.5	gi|390938910|ref|YP_006402648.1|	-	0.19	10.7	0.0	0.35	9.8	0.0	1.6	1	1	0	1	1	1	0	Tn7-like	transposition	protein	D
EamA	PF00892.20	gi|390938911|ref|YP_006402649.1|	-	2.7e-19	69.7	20.3	3e-19	69.5	20.3	1.0	1	0	0	1	1	1	1	EamA-like	transporter	family
Multi_Drug_Res	PF00893.19	gi|390938911|ref|YP_006402649.1|	-	0.044	14.5	3.9	0.044	14.5	3.9	2.2	1	1	1	2	2	2	0	Small	Multidrug	Resistance	protein
PUNUT	PF16913.5	gi|390938911|ref|YP_006402649.1|	-	0.45	9.7	14.3	0.03	13.6	6.6	1.9	1	1	1	2	2	2	0	Purine	nucleobase	transmembrane	transport
TrkH	PF02386.16	gi|390938912|ref|YP_006402650.1|	-	9.4e-47	159.6	29.5	3.1e-23	82.0	12.3	2.1	1	1	1	2	2	2	2	Cation	transport	protein
PHBC_N	PF12551.8	gi|390938912|ref|YP_006402650.1|	-	0.072	12.9	0.1	3.8	7.3	0.0	2.4	2	0	0	2	2	2	0	Poly-beta-hydroxybutyrate	polymerase	N	terminal
DctM	PF06808.12	gi|390938913|ref|YP_006402651.1|	-	2.9e-76	256.9	59.2	3.5e-76	256.7	59.2	1.0	1	0	0	1	1	1	1	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
DctQ	PF04290.12	gi|390938914|ref|YP_006402652.1|	-	1.2e-18	67.3	7.9	1.2e-18	67.3	7.9	1.8	1	1	1	2	2	2	1	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
DUF5534	PF17686.1	gi|390938914|ref|YP_006402652.1|	-	0.16	12.2	0.5	0.25	11.6	0.5	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5534)
DctP	PF03480.13	gi|390938915|ref|YP_006402653.1|	-	1.5e-50	172.1	0.0	2.1e-50	171.7	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein,	family	7
adh_short_C2	PF13561.6	gi|390938916|ref|YP_006402654.1|	-	8.2e-68	228.4	0.0	9.7e-68	228.2	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|390938916|ref|YP_006402654.1|	-	5.1e-64	215.3	0.0	6.1e-64	215.1	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|390938916|ref|YP_006402654.1|	-	5.3e-14	52.5	0.0	7e-14	52.1	0.0	1.1	1	0	0	1	1	1	1	KR	domain
Polysacc_synt_2	PF02719.15	gi|390938916|ref|YP_006402654.1|	-	0.0056	15.9	0.1	0.0084	15.3	0.1	1.2	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
AdoHcyase_NAD	PF00670.21	gi|390938916|ref|YP_006402654.1|	-	0.021	14.9	0.3	0.032	14.3	0.3	1.3	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Epimerase	PF01370.21	gi|390938916|ref|YP_006402654.1|	-	0.031	13.7	0.1	0.075	12.5	0.1	1.7	2	1	0	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.19	gi|390938916|ref|YP_006402654.1|	-	0.076	12.3	0.1	0.21	10.9	0.1	1.9	1	1	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
3Beta_HSD	PF01073.19	gi|390938916|ref|YP_006402654.1|	-	0.095	11.7	0.3	0.13	11.2	0.3	1.2	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Sm_like	PF16243.5	gi|390938916|ref|YP_006402654.1|	-	0.13	12.4	1.7	0.15	12.3	0.0	2.0	3	0	0	3	3	3	0	Sm_like	domain
RmlD_sub_bind	PF04321.17	gi|390938916|ref|YP_006402654.1|	-	0.13	11.3	0.1	0.21	10.6	0.1	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|390938917|ref|YP_006402655.1|	-	6.2e-45	153.5	0.0	7.8e-45	153.2	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|390938917|ref|YP_006402655.1|	-	5.7e-37	127.9	0.2	7.1e-36	124.3	0.2	2.0	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|390938917|ref|YP_006402655.1|	-	2.4e-24	86.0	0.0	6.2e-24	84.6	0.0	1.6	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|390938917|ref|YP_006402655.1|	-	3.8e-23	81.9	0.0	9.8e-23	80.5	0.0	1.6	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|390938917|ref|YP_006402655.1|	-	3.5e-16	59.2	3.4	1.8e-15	56.9	1.6	2.8	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|390938917|ref|YP_006402655.1|	-	2.2e-12	46.7	0.6	2.4e-07	30.2	0.0	3.0	2	1	1	3	3	3	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|390938917|ref|YP_006402655.1|	-	2.2e-12	47.2	0.0	4e-12	46.4	0.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
adh_short	PF00106.25	gi|390938917|ref|YP_006402655.1|	-	4e-06	26.4	0.0	6.7e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|390938917|ref|YP_006402655.1|	-	0.00017	21.5	1.0	0.0021	18.0	1.0	2.3	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.13	gi|390938917|ref|YP_006402655.1|	-	0.0028	17.3	0.1	0.0075	15.9	0.1	1.8	1	1	0	1	1	1	1	NmrA-like	family
F420_oxidored	PF03807.17	gi|390938917|ref|YP_006402655.1|	-	0.0035	17.9	0.0	0.0089	16.6	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|390938917|ref|YP_006402655.1|	-	0.0078	16.5	0.1	0.014	15.6	0.1	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
TrkA_N	PF02254.18	gi|390938917|ref|YP_006402655.1|	-	0.013	15.8	0.3	0.025	14.8	0.0	1.7	2	0	0	2	2	2	0	TrkA-N	domain
Glyco_trans_4_2	PF13477.6	gi|390938917|ref|YP_006402655.1|	-	0.049	13.7	0.0	0.16	12.0	0.0	1.8	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Glyco_transf_4	PF13439.6	gi|390938917|ref|YP_006402655.1|	-	0.13	12.3	0.3	0.87	9.6	0.1	2.3	2	1	0	2	2	2	0	Glycosyltransferase	Family	4
HTH_10	PF04967.12	gi|390938918|ref|YP_006402656.1|	-	4e-12	45.7	0.2	8.9e-12	44.6	0.2	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|390938918|ref|YP_006402656.1|	-	0.0025	17.3	0.3	0.004	16.6	0.3	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
2-Hacid_dh_C	PF02826.19	gi|390938919|ref|YP_006402657.1|	-	1.8e-58	196.9	0.0	2.6e-58	196.3	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|390938919|ref|YP_006402657.1|	-	9.8e-25	86.8	0.2	1.4e-24	86.2	0.2	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|390938919|ref|YP_006402657.1|	-	6.7e-08	32.9	0.0	1.5e-07	31.7	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_C	PF03720.15	gi|390938919|ref|YP_006402657.1|	-	7.1e-05	23.2	0.1	0.00045	20.6	0.0	2.2	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
F420_oxidored	PF03807.17	gi|390938919|ref|YP_006402657.1|	-	0.00025	21.6	0.0	0.00081	19.9	0.0	2.0	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|390938919|ref|YP_006402657.1|	-	0.00035	20.8	0.1	0.0034	17.6	0.0	2.4	2	1	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
GFO_IDH_MocA	PF01408.22	gi|390938919|ref|YP_006402657.1|	-	0.0015	19.3	0.0	0.0036	18.1	0.0	1.7	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_7	PF13241.6	gi|390938919|ref|YP_006402657.1|	-	0.0016	18.8	0.1	0.013	16.0	0.0	2.1	2	0	0	2	2	2	1	Putative	NAD(P)-binding
TrkA_N	PF02254.18	gi|390938919|ref|YP_006402657.1|	-	0.015	15.6	0.0	0.049	13.9	0.0	2.0	1	0	0	1	1	1	0	TrkA-N	domain
PNP_UDP_1	PF01048.20	gi|390938919|ref|YP_006402657.1|	-	0.028	13.7	0.0	0.17	11.1	0.0	2.1	2	0	0	2	2	2	0	Phosphorylase	superfamily
Shikimate_DH	PF01488.20	gi|390938919|ref|YP_006402657.1|	-	0.061	13.4	0.1	0.22	11.6	0.0	2.0	2	1	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
IlvN	PF07991.12	gi|390938919|ref|YP_006402657.1|	-	0.072	12.7	0.0	0.25	10.9	0.0	1.9	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
ThiF	PF00899.21	gi|390938919|ref|YP_006402657.1|	-	0.14	11.4	0.0	12	5.1	0.0	2.2	2	0	0	2	2	2	0	ThiF	family
DHDPS	PF00701.22	gi|390938920|ref|YP_006402658.1|	-	4.1e-53	180.0	0.0	4.7e-53	179.8	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
HSDR_N_2	PF13588.6	gi|390938920|ref|YP_006402658.1|	-	0.015	15.3	0.0	0.03	14.3	0.0	1.5	1	0	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
FGGY_N	PF00370.21	gi|390938921|ref|YP_006402659.1|	-	8.7e-30	104.1	0.0	1.2e-29	103.6	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|390938921|ref|YP_006402659.1|	-	9.2e-08	32.0	0.0	1.4e-07	31.5	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
tRNA-synt_2c	PF01411.19	gi|390938922|ref|YP_006402660.1|	-	5.7e-92	309.0	0.0	4.6e-49	167.4	0.0	2.2	1	1	0	2	2	2	2	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|390938922|ref|YP_006402660.1|	-	8.1e-11	41.9	0.1	2.8e-10	40.1	0.1	2.0	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2e	PF02091.15	gi|390938922|ref|YP_006402660.1|	-	0.00011	21.6	0.0	0.00019	20.8	0.0	1.3	1	0	0	1	1	1	1	Glycyl-tRNA	synthetase	alpha	subunit
Ribosomal_60s	PF00428.19	gi|390938923|ref|YP_006402661.1|	-	4.4e-17	62.5	16.1	5.1e-17	62.3	16.1	1.1	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
PepSY_2	PF13670.6	gi|390938923|ref|YP_006402661.1|	-	0.0091	16.0	6.3	0.22	11.5	0.2	2.2	2	0	0	2	2	2	2	Peptidase	propeptide	and	YPEB	domain
Ribonuc_L-PSP	PF01042.21	gi|390938923|ref|YP_006402661.1|	-	0.035	14.1	1.5	0.045	13.8	1.5	1.1	1	0	0	1	1	1	0	Endoribonuclease	L-PSP
PhetRS_B1	PF18262.1	gi|390938923|ref|YP_006402661.1|	-	0.049	13.9	0.0	0.049	13.9	0.0	1.6	2	0	0	2	2	2	0	Phe-tRNA	synthetase	beta	subunit	B1	domain
EF-hand_14	PF17959.1	gi|390938923|ref|YP_006402661.1|	-	0.053	13.9	0.1	0.13	12.6	0.0	1.6	2	0	0	2	2	2	0	EF-hand	domain
Ribosomal_L10	PF00466.20	gi|390938924|ref|YP_006402662.1|	-	5.4e-23	81.0	0.2	1.4e-22	79.7	0.2	1.7	1	0	0	1	1	1	1	Ribosomal	protein	L10
RL10P_insert	PF17777.1	gi|390938924|ref|YP_006402662.1|	-	4.3e-16	58.7	0.2	2.1e-15	56.5	0.0	2.2	3	0	0	3	3	3	1	Insertion	domain	in	60S	ribosomal	protein	L10P
Ribosomal_60s	PF00428.19	gi|390938924|ref|YP_006402662.1|	-	0.032	14.8	4.3	0.065	13.8	4.3	1.7	1	0	0	1	1	1	0	60s	Acidic	ribosomal	protein
Ribosomal_L1	PF00687.21	gi|390938925|ref|YP_006402663.1|	-	2.5e-35	122.1	0.0	2.9e-35	121.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L11_N	PF03946.14	gi|390938926|ref|YP_006402664.1|	-	9.5e-24	83.0	0.7	1.7e-23	82.2	0.7	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L11	PF00298.19	gi|390938926|ref|YP_006402664.1|	-	1e-19	70.8	1.2	1.5e-19	70.2	1.2	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Spt5-NGN	PF03439.13	gi|390938927|ref|YP_006402665.1|	-	4.5e-17	61.7	0.1	6.3e-17	61.2	0.1	1.2	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|390938927|ref|YP_006402665.1|	-	6.2e-07	29.1	0.1	9.7e-06	25.4	0.1	2.3	2	0	0	2	2	2	1	KOW	motif
NusG	PF02357.19	gi|390938927|ref|YP_006402665.1|	-	0.024	15.2	0.0	0.036	14.6	0.0	1.3	1	0	0	1	1	1	0	Transcription	termination	factor	nusG
SecE	PF00584.20	gi|390938928|ref|YP_006402666.1|	-	7.8e-05	22.5	0.2	8.9e-05	22.3	0.2	1.1	1	0	0	1	1	1	1	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
SRP54	PF00448.22	gi|390938929|ref|YP_006402667.1|	-	2.1e-69	233.1	0.0	2.9e-69	232.7	0.0	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.19	gi|390938929|ref|YP_006402667.1|	-	3.7e-07	30.3	2.6	3.7e-07	30.3	2.6	1.9	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
cobW	PF02492.19	gi|390938929|ref|YP_006402667.1|	-	8.7e-05	22.2	0.1	0.00073	19.2	0.0	2.0	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
CbiA	PF01656.23	gi|390938929|ref|YP_006402667.1|	-	0.00028	21.0	0.2	0.0017	18.4	0.0	2.3	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_30	PF13604.6	gi|390938929|ref|YP_006402667.1|	-	0.00032	20.5	0.0	0.00057	19.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_31	PF13614.6	gi|390938929|ref|YP_006402667.1|	-	0.0012	18.7	0.2	0.0043	17.0	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|390938929|ref|YP_006402667.1|	-	0.0022	18.3	1.0	0.48	10.7	0.2	3.1	2	1	0	2	2	2	1	AAA	domain
MeaB	PF03308.16	gi|390938929|ref|YP_006402667.1|	-	0.0026	16.8	0.2	0.044	12.7	0.0	2.2	2	1	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_24	PF13479.6	gi|390938929|ref|YP_006402667.1|	-	0.0039	16.9	0.1	0.0096	15.7	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|390938929|ref|YP_006402667.1|	-	0.0081	15.5	0.0	0.019	14.2	0.0	1.7	2	0	0	2	2	2	1	Zeta	toxin
Thymidylate_kin	PF02223.17	gi|390938929|ref|YP_006402667.1|	-	0.0095	15.6	0.6	0.44	10.2	0.0	2.9	3	0	0	3	3	3	1	Thymidylate	kinase
MMR_HSR1	PF01926.23	gi|390938929|ref|YP_006402667.1|	-	0.011	15.8	1.2	0.081	13.0	1.2	2.2	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ArsA_ATPase	PF02374.15	gi|390938929|ref|YP_006402667.1|	-	0.013	14.7	0.1	0.031	13.4	0.1	1.6	1	0	0	1	1	1	0	Anion-transporting	ATPase
AAA_33	PF13671.6	gi|390938929|ref|YP_006402667.1|	-	0.015	15.4	0.0	0.029	14.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Arf	PF00025.21	gi|390938929|ref|YP_006402667.1|	-	0.017	14.6	0.1	0.094	12.2	0.0	2.1	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
Peripla_BP_6	PF13458.6	gi|390938929|ref|YP_006402667.1|	-	0.018	14.7	0.0	0.032	13.9	0.0	1.4	1	0	0	1	1	1	0	Periplasmic	binding	protein
NTPase_1	PF03266.15	gi|390938929|ref|YP_006402667.1|	-	0.022	14.7	1.1	0.21	11.5	0.1	2.4	1	1	1	2	2	2	0	NTPase
ATP_bind_1	PF03029.17	gi|390938929|ref|YP_006402667.1|	-	0.032	14.0	0.2	0.16	11.7	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_19	PF13245.6	gi|390938929|ref|YP_006402667.1|	-	0.036	14.4	0.0	0.058	13.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.6	gi|390938929|ref|YP_006402667.1|	-	0.048	14.1	0.1	0.14	12.5	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|390938929|ref|YP_006402667.1|	-	0.053	14.0	0.3	0.13	12.7	0.1	2.1	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|390938929|ref|YP_006402667.1|	-	0.071	13.5	0.7	0.33	11.3	0.1	2.3	2	1	0	2	2	2	0	AAA	ATPase	domain
TPP_enzyme_M	PF00205.22	gi|390938929|ref|YP_006402667.1|	-	0.1	12.4	0.0	0.77	9.5	0.0	2.3	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	central	domain
AAA_28	PF13521.6	gi|390938929|ref|YP_006402667.1|	-	0.11	12.7	0.0	0.28	11.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
DAP3	PF10236.9	gi|390938929|ref|YP_006402667.1|	-	0.14	11.3	0.0	0.32	10.1	0.0	1.5	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
AAA_7	PF12775.7	gi|390938929|ref|YP_006402667.1|	-	0.19	11.2	0.0	0.38	10.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Prefoldin	PF02996.17	gi|390938930|ref|YP_006402668.1|	-	5.9e-14	52.0	0.1	7.4e-14	51.7	0.1	1.1	1	0	0	1	1	1	1	Prefoldin	subunit
Prefoldin_2	PF01920.20	gi|390938930|ref|YP_006402668.1|	-	1.7e-06	27.9	1.3	0.0081	16.1	0.3	2.1	2	0	0	2	2	2	2	Prefoldin	subunit
BLI1	PF17324.2	gi|390938930|ref|YP_006402668.1|	-	0.0071	17.0	0.2	0.02	15.5	0.0	1.8	2	0	0	2	2	2	1	BLOC-1	interactor	1
Holin_BhlA	PF10960.8	gi|390938930|ref|YP_006402668.1|	-	0.022	14.7	0.1	0.043	13.8	0.1	1.5	1	0	0	1	1	1	0	BhlA	holin	family
Spc7	PF08317.11	gi|390938930|ref|YP_006402668.1|	-	0.096	11.6	1.4	0.46	9.3	0.0	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
Gon7	PF08738.10	gi|390938930|ref|YP_006402668.1|	-	0.1	12.7	0.2	0.18	11.9	0.2	1.4	1	0	0	1	1	1	0	Gon7	family
Ribosomal_L18A	PF01775.17	gi|390938931|ref|YP_006402669.1|	-	2.3e-12	47.1	0.7	3.5e-12	46.5	0.7	1.3	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L18Ae/60S-L20/60S-L18A
Imm2	PF14426.6	gi|390938931|ref|YP_006402669.1|	-	0.081	13.0	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	Immunity	protein	Imm2
eIF-6	PF01912.18	gi|390938932|ref|YP_006402670.1|	-	2.5e-57	193.5	0.4	2.9e-57	193.2	0.4	1.1	1	0	0	1	1	1	1	eIF-6	family
Ribosomal_L31e	PF01198.19	gi|390938933|ref|YP_006402671.1|	-	7.8e-12	45.3	0.5	9.6e-12	45.0	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Ribosomal_L39	PF00832.20	gi|390938934|ref|YP_006402672.1|	-	1.6e-16	59.7	7.3	1.8e-16	59.5	7.3	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
DUF4224	PF13986.6	gi|390938934|ref|YP_006402672.1|	-	0.068	13.1	0.3	0.083	12.8	0.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4224)
dsDNA_bind	PF01984.20	gi|390938935|ref|YP_006402673.1|	-	1.1e-22	80.5	11.0	2.4e-22	79.3	11.0	1.5	1	1	0	1	1	1	1	Double-stranded	DNA-binding	domain
Radial_spoke_3	PF06098.11	gi|390938935|ref|YP_006402673.1|	-	0.0011	18.4	5.1	0.0014	18.0	5.1	1.0	1	0	0	1	1	1	1	Radial	spoke	protein	3
ClpB_D2-small	PF10431.9	gi|390938935|ref|YP_006402673.1|	-	0.033	14.2	4.1	1.2	9.3	1.2	2.2	2	0	0	2	2	2	0	C-terminal,	D2-small	domain,	of	ClpB	protein
DUF4706	PF15797.5	gi|390938935|ref|YP_006402673.1|	-	0.061	13.9	0.6	0.076	13.6	0.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4706)
Herpes_UL14	PF03580.14	gi|390938935|ref|YP_006402673.1|	-	0.15	12.3	6.3	0.12	12.7	4.7	1.6	1	1	1	2	2	2	0	Herpesvirus	UL14-like	protein
DUF2857	PF11198.8	gi|390938935|ref|YP_006402673.1|	-	0.26	11.0	5.4	6.1	6.6	1.9	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2857)
Ribosomal_S19e	PF01090.19	gi|390938936|ref|YP_006402674.1|	-	6.7e-51	171.6	0.0	7.6e-51	171.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
HTH_12	PF08461.10	gi|390938936|ref|YP_006402674.1|	-	3.9e-05	23.5	0.9	0.00063	19.6	0.9	2.3	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
RuvB_C	PF05491.13	gi|390938936|ref|YP_006402674.1|	-	0.0015	18.3	0.1	0.0086	15.9	0.1	2.0	2	0	0	2	2	2	1	RuvB	C-terminal	winged	helix	domain
HTH_20	PF12840.7	gi|390938936|ref|YP_006402674.1|	-	0.026	14.6	0.3	0.27	11.3	0.1	2.5	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|390938936|ref|YP_006402674.1|	-	0.038	13.8	0.0	2	8.3	0.0	2.7	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|390938936|ref|YP_006402674.1|	-	0.14	12.1	0.3	2.3	8.2	0.2	2.5	3	0	0	3	3	3	0	MarR	family
CRS1_YhbY	PF01985.21	gi|390938937|ref|YP_006402675.1|	-	5.7e-12	45.6	0.6	6.4e-12	45.5	0.6	1.1	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
Rpr2	PF04032.16	gi|390938938|ref|YP_006402676.1|	-	2e-15	56.8	0.0	2.5e-15	56.5	0.0	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
EMG1	PF03587.14	gi|390938939|ref|YP_006402677.1|	-	3.7e-50	170.3	0.0	4.2e-50	170.1	0.0	1.0	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
NRDD	PF13597.6	gi|390938940|ref|YP_006402678.1|	-	3.7e-145	484.9	0.0	1.1e-81	275.3	0.0	2.0	2	0	0	2	2	2	2	Anaerobic	ribonucleoside-triphosphate	reductase
Intein_splicing	PF14890.6	gi|390938940|ref|YP_006402678.1|	-	1.2e-13	51.1	0.1	2.2e-13	50.3	0.1	1.4	1	0	0	1	1	1	1	Intein	splicing	domain
HypA	PF01155.19	gi|390938940|ref|YP_006402678.1|	-	0.013	15.5	0.0	0.029	14.4	0.0	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TackOD1	PF18551.1	gi|390938940|ref|YP_006402678.1|	-	0.025	14.2	0.0	0.045	13.4	0.0	1.3	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zinc_ribbon_2	PF13240.6	gi|390938940|ref|YP_006402678.1|	-	0.83	9.5	7.0	8.6	6.2	7.1	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF35_N	PF12172.8	gi|390938940|ref|YP_006402678.1|	-	1.7	8.6	3.9	5	7.1	3.9	1.8	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-ribbon_3	PF13248.6	gi|390938940|ref|YP_006402678.1|	-	2.9	7.4	7.8	57	3.3	8.2	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF3797	PF12677.7	gi|390938940|ref|YP_006402678.1|	-	7.4	6.5	5.7	4.1	7.4	0.5	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Radical_SAM	PF04055.21	gi|390938941|ref|YP_006402679.1|	-	2.5e-18	67.0	0.0	4.7e-18	66.1	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|390938941|ref|YP_006402679.1|	-	1.9e-09	37.9	0.0	3.2e-09	37.2	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|390938941|ref|YP_006402679.1|	-	1.3e-06	28.5	0.0	2.8e-06	27.5	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Thy1	PF02511.15	gi|390938942|ref|YP_006402680.1|	-	4.5e-56	189.6	0.0	6e-56	189.2	0.0	1.2	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
ETC_C1_NDUFA5	PF04716.14	gi|390938942|ref|YP_006402680.1|	-	0.08	12.8	0.0	3.5	7.5	0.0	2.6	2	0	0	2	2	2	0	ETC	complex	I	subunit	conserved	region
PDGLE	PF13190.6	gi|390938945|ref|YP_006402683.1|	-	0.37	10.7	1.8	10	6.1	0.3	2.3	2	1	0	2	2	2	0	PDGLE	domain
BTP	PF05232.12	gi|390938945|ref|YP_006402683.1|	-	0.66	10.1	7.5	0.15	12.2	4.3	1.5	2	0	0	2	2	2	0	Chlorhexidine	efflux	transporter
SfsA	PF03749.13	gi|390938946|ref|YP_006402684.1|	-	9.6e-28	96.8	0.0	1.3e-27	96.4	0.0	1.2	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein	RE	domain
SfsA_N	PF17746.1	gi|390938946|ref|YP_006402684.1|	-	1.6e-13	50.6	0.1	2.7e-13	49.8	0.1	1.4	1	0	0	1	1	1	1	SfsA	N-terminal	OB	domain
NERD	PF08378.11	gi|390938946|ref|YP_006402684.1|	-	0.089	13.3	0.0	0.16	12.5	0.0	1.4	1	0	0	1	1	1	0	Nuclease-related	domain
ADH_N	PF08240.12	gi|390938947|ref|YP_006402685.1|	-	9e-34	115.6	0.6	1.6e-33	114.8	0.6	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|390938947|ref|YP_006402685.1|	-	3.1e-06	27.2	0.0	9.1e-06	25.7	0.0	1.8	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|390938947|ref|YP_006402685.1|	-	0.0018	19.3	0.1	0.0034	18.4	0.1	1.4	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|390938947|ref|YP_006402685.1|	-	0.018	14.4	0.0	0.075	12.4	0.0	1.9	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
PMT_2	PF13231.6	gi|390938948|ref|YP_006402686.1|	-	0.00014	22.1	15.3	0.00014	22.1	15.3	2.8	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
GT87	PF09594.10	gi|390938948|ref|YP_006402686.1|	-	0.0014	18.4	21.4	0.0014	18.4	21.4	2.4	2	1	0	2	2	2	1	Glycosyltransferase	family	87
dUTPase	PF00692.19	gi|390938949|ref|YP_006402687.1|	-	4.7e-16	58.6	0.0	7.6e-16	58.0	0.0	1.2	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.11	gi|390938949|ref|YP_006402687.1|	-	0.0011	17.8	0.0	0.0027	16.5	0.0	1.6	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
NTP_transferase	PF00483.23	gi|390938950|ref|YP_006402688.1|	-	9.5e-38	130.2	0.0	1.1e-37	130.0	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|390938950|ref|YP_006402688.1|	-	3e-12	47.2	0.0	4.8e-12	46.5	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|390938950|ref|YP_006402688.1|	-	0.0066	16.2	0.0	0.0082	15.9	0.0	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
PAC2	PF09754.9	gi|390938950|ref|YP_006402688.1|	-	0.071	13.1	0.0	0.093	12.7	0.0	1.4	1	1	0	1	1	1	0	PAC2	family
Peptidase_M54	PF07998.11	gi|390938951|ref|YP_006402689.1|	-	1.5e-32	113.2	0.2	1.6e-32	113.1	0.2	1.1	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M10	PF00413.24	gi|390938951|ref|YP_006402689.1|	-	9.1e-05	22.4	0.0	0.00011	22.1	0.0	1.2	1	0	0	1	1	1	1	Matrixin
Reprolysin_4	PF13583.6	gi|390938951|ref|YP_006402689.1|	-	0.01	15.5	0.0	0.015	15.0	0.0	1.2	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_3	PF13582.6	gi|390938951|ref|YP_006402689.1|	-	0.01	16.3	0.0	0.014	15.9	0.0	1.3	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M43	PF05572.13	gi|390938951|ref|YP_006402689.1|	-	0.01	15.7	0.0	0.017	15.0	0.0	1.3	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
Metallopep	PF12044.8	gi|390938951|ref|YP_006402689.1|	-	0.025	13.2	0.3	0.034	12.8	0.3	1.1	1	0	0	1	1	1	0	Putative	peptidase	family
DUF4953	PF16313.5	gi|390938951|ref|YP_006402689.1|	-	0.03	13.5	0.1	0.06	12.6	0.0	1.5	2	0	0	2	2	2	0	Met-zincin
Reprolysin_5	PF13688.6	gi|390938951|ref|YP_006402689.1|	-	0.073	13.2	0.0	0.09	12.9	0.0	1.2	1	0	0	1	1	1	0	Metallo-peptidase	family	M12
Peptidase_M66	PF10462.9	gi|390938951|ref|YP_006402689.1|	-	0.08	11.9	0.0	0.11	11.4	0.0	1.1	1	0	0	1	1	1	0	Peptidase	M66
Archease	PF01951.16	gi|390938952|ref|YP_006402690.1|	-	4.4e-37	127.4	0.0	5e-37	127.2	0.0	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
Mac	PF12464.8	gi|390938952|ref|YP_006402690.1|	-	0.04	14.2	0.1	0.079	13.2	0.1	1.5	1	0	0	1	1	1	0	Maltose	acetyltransferase
RuBisCO_large	PF00016.20	gi|390938953|ref|YP_006402691.1|	-	3.1e-97	325.4	0.0	3.8e-97	325.1	0.0	1.1	1	0	0	1	1	1	1	Ribulose	bisphosphate	carboxylase	large	chain,	catalytic	domain
RuBisCO_large_N	PF02788.16	gi|390938953|ref|YP_006402691.1|	-	1.3e-46	157.6	0.0	2.6e-46	156.7	0.0	1.5	1	0	0	1	1	1	1	Ribulose	bisphosphate	carboxylase	large	chain,	N-terminal	domain
DUF697	PF05128.12	gi|390938953|ref|YP_006402691.1|	-	0.16	11.7	0.0	0.31	10.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF697)
LigA	PF07746.11	gi|390938953|ref|YP_006402691.1|	-	0.17	12.0	0.0	0.6	10.3	0.0	1.9	2	0	0	2	2	2	0	Aromatic-ring-opening	dioxygenase	LigAB,	LigA	subunit
ABC_tran	PF00005.27	gi|390938954|ref|YP_006402692.1|	-	1.9e-29	102.9	0.0	2.3e-29	102.6	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390938954|ref|YP_006402692.1|	-	3.2e-05	23.9	0.3	0.047	13.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390938954|ref|YP_006402692.1|	-	0.0017	17.8	0.0	0.0041	16.6	0.0	1.5	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
NB-ARC	PF00931.22	gi|390938954|ref|YP_006402692.1|	-	0.0054	16.0	0.2	0.078	12.1	0.3	2.0	2	0	0	2	2	2	1	NB-ARC	domain
IstB_IS21	PF01695.17	gi|390938954|ref|YP_006402692.1|	-	0.0079	15.9	0.0	1	9.0	0.0	2.1	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
SbcCD_C	PF13558.6	gi|390938954|ref|YP_006402692.1|	-	0.0095	16.2	0.1	0.053	13.8	0.1	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.6	gi|390938954|ref|YP_006402692.1|	-	0.011	16.2	0.2	0.013	15.9	0.2	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|390938954|ref|YP_006402692.1|	-	0.011	16.0	0.1	0.045	14.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|390938954|ref|YP_006402692.1|	-	0.024	14.6	0.0	0.042	13.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|390938954|ref|YP_006402692.1|	-	0.024	14.5	0.1	0.14	12.0	0.1	2.0	2	0	0	2	2	2	0	RsgA	GTPase
DnaB_C	PF03796.15	gi|390938954|ref|YP_006402692.1|	-	0.033	13.5	0.0	0.074	12.4	0.0	1.5	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
CbiA	PF01656.23	gi|390938954|ref|YP_006402692.1|	-	0.043	13.9	0.0	0.062	13.3	0.0	1.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ATPase_2	PF01637.18	gi|390938954|ref|YP_006402692.1|	-	0.061	13.2	0.1	0.15	11.9	0.0	1.7	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_24	PF13479.6	gi|390938954|ref|YP_006402692.1|	-	0.11	12.2	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|390938954|ref|YP_006402692.1|	-	0.13	12.8	0.0	0.28	11.7	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|390938954|ref|YP_006402692.1|	-	0.16	12.1	0.0	2.6	8.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|390938954|ref|YP_006402692.1|	-	0.18	12.2	0.0	0.31	11.4	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
MFS_1	PF07690.16	gi|390938958|ref|YP_006402696.1|	-	4.6e-52	177.1	47.1	7.2e-52	176.5	47.1	1.4	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|390938958|ref|YP_006402696.1|	-	3.9e-13	49.1	33.9	4.1e-10	39.1	12.0	2.5	3	0	0	3	3	3	2	Sugar	(and	other)	transporter
OATP	PF03137.20	gi|390938958|ref|YP_006402696.1|	-	3.9e-07	28.7	1.0	3.9e-07	28.7	1.0	4.1	2	2	3	5	5	5	3	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Aminotran_5	PF00266.19	gi|390938959|ref|YP_006402697.1|	-	5.3e-36	124.4	0.0	6.9e-36	124.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Peptidase_C15	PF01470.17	gi|390938960|ref|YP_006402698.1|	-	4.2e-71	239.3	0.0	4.8e-71	239.1	0.0	1.0	1	0	0	1	1	1	1	Pyroglutamyl	peptidase
UTRA	PF07702.13	gi|390938960|ref|YP_006402698.1|	-	0.02	14.7	0.0	0.036	13.9	0.0	1.4	1	0	0	1	1	1	0	UTRA	domain
Peptidase_S8	PF00082.22	gi|390938962|ref|YP_006402700.1|	-	4.4e-53	180.5	10.5	5.7e-53	180.1	10.5	1.1	1	0	0	1	1	1	1	Subtilase	family
Glyco_hydro_80	PF13647.6	gi|390938962|ref|YP_006402700.1|	-	0.00084	18.9	0.5	0.0024	17.4	0.5	1.7	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	80	of	chitosanase	A
Ycf70	PF17382.2	gi|390938962|ref|YP_006402700.1|	-	0.019	15.4	0.2	0.037	14.4	0.2	1.5	1	0	0	1	1	1	0	Uncharacterized	Ycf70-like
CspB_prodomain	PF18425.1	gi|390938962|ref|YP_006402700.1|	-	0.055	13.5	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	Csp	protease	B	prodomain
MTS	PF05175.14	gi|390938963|ref|YP_006402701.1|	-	2.6e-32	111.7	0.0	2.9e-32	111.6	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|390938963|ref|YP_006402701.1|	-	1.8e-12	47.3	0.0	1.8e-12	47.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.6	gi|390938963|ref|YP_006402701.1|	-	5.8e-10	39.2	0.0	7.9e-10	38.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|390938963|ref|YP_006402701.1|	-	9e-08	32.7	0.0	1.3e-07	32.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|390938963|ref|YP_006402701.1|	-	2.4e-07	30.8	0.0	4.3e-07	30.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.16	gi|390938963|ref|YP_006402701.1|	-	4.8e-07	29.7	0.0	5.5e-07	29.5	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_12	PF08242.12	gi|390938963|ref|YP_006402701.1|	-	1.1e-05	26.1	0.0	1.5e-05	25.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_16	PF10294.9	gi|390938963|ref|YP_006402701.1|	-	1.6e-05	24.7	0.1	2.3e-05	24.2	0.1	1.2	1	0	0	1	1	1	1	Lysine	methyltransferase
Methyltransf_11	PF08241.12	gi|390938963|ref|YP_006402701.1|	-	0.00011	22.7	0.0	0.00015	22.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|390938963|ref|YP_006402701.1|	-	0.00089	19.1	0.0	0.00099	19.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|390938963|ref|YP_006402701.1|	-	0.001	18.6	0.0	0.0015	18.1	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
UPF0020	PF01170.18	gi|390938963|ref|YP_006402701.1|	-	0.0079	15.9	0.0	0.011	15.4	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
TRM	PF02005.16	gi|390938963|ref|YP_006402701.1|	-	0.028	13.6	0.0	0.034	13.3	0.0	1.1	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
Cons_hypoth95	PF03602.15	gi|390938963|ref|YP_006402701.1|	-	0.032	13.9	0.0	0.05	13.3	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
GidB	PF02527.15	gi|390938963|ref|YP_006402701.1|	-	0.14	11.4	0.0	0.25	10.7	0.0	1.4	1	0	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
Ribosomal_L14e	PF01929.17	gi|390938964|ref|YP_006402702.1|	-	0.00034	21.1	0.0	0.00048	20.6	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L14
KOW	PF00467.29	gi|390938964|ref|YP_006402702.1|	-	0.00046	20.0	0.2	0.00046	20.0	0.2	1.6	2	0	0	2	2	2	1	KOW	motif
AAA_17	PF13207.6	gi|390938965|ref|YP_006402703.1|	-	7.3e-17	62.1	0.0	1.1e-16	61.5	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Cytidylate_kin2	PF13189.6	gi|390938965|ref|YP_006402703.1|	-	7.5e-17	62.0	0.1	2.5e-09	37.5	0.0	2.1	1	1	1	2	2	2	2	Cytidylate	kinase-like	family
AAA_18	PF13238.6	gi|390938965|ref|YP_006402703.1|	-	1.4e-12	48.3	0.1	2.8e-12	47.3	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|390938965|ref|YP_006402703.1|	-	2.9e-08	33.7	0.2	4.7e-05	23.2	0.1	2.1	1	1	1	2	2	2	2	Cytidylate	kinase
ADK	PF00406.22	gi|390938965|ref|YP_006402703.1|	-	3.3e-07	30.5	0.0	9.6e-07	29.0	0.0	1.8	2	0	0	2	2	2	1	Adenylate	kinase
AAA	PF00004.29	gi|390938965|ref|YP_006402703.1|	-	5.7e-05	23.6	0.0	0.00013	22.4	0.0	1.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|390938965|ref|YP_006402703.1|	-	8.6e-05	22.8	0.0	0.00021	21.5	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|390938965|ref|YP_006402703.1|	-	0.00086	19.5	0.0	0.0019	18.4	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
SKI	PF01202.22	gi|390938965|ref|YP_006402703.1|	-	0.0018	18.4	0.1	0.015	15.4	0.1	2.1	1	1	0	1	1	1	1	Shikimate	kinase
RuvB_N	PF05496.12	gi|390938965|ref|YP_006402703.1|	-	0.012	15.4	0.0	0.14	11.9	0.0	2.2	1	1	1	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
PRK	PF00485.18	gi|390938965|ref|YP_006402703.1|	-	0.016	14.9	0.2	0.6	9.8	0.1	2.2	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_22	PF13401.6	gi|390938965|ref|YP_006402703.1|	-	0.017	15.4	0.0	0.032	14.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|390938965|ref|YP_006402703.1|	-	0.033	14.6	0.0	0.041	14.3	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|390938965|ref|YP_006402703.1|	-	0.04	13.8	0.0	0.074	13.0	0.0	1.5	1	0	0	1	1	1	0	NTPase
AAA_24	PF13479.6	gi|390938965|ref|YP_006402703.1|	-	0.048	13.4	0.1	0.083	12.6	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|390938965|ref|YP_006402703.1|	-	0.054	12.9	0.0	0.094	12.1	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.14	gi|390938965|ref|YP_006402703.1|	-	0.057	13.4	0.0	0.097	12.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Hydin_ADK	PF17213.3	gi|390938965|ref|YP_006402703.1|	-	0.065	13.5	0.0	0.11	12.8	0.0	1.3	1	0	0	1	1	1	0	Hydin	Adenylate	kinase-like	domain
KTI12	PF08433.10	gi|390938965|ref|YP_006402703.1|	-	0.08	12.4	0.0	0.11	11.9	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
SRP54	PF00448.22	gi|390938965|ref|YP_006402703.1|	-	0.13	11.9	0.0	0.19	11.3	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
ANTAR	PF03861.14	gi|390938965|ref|YP_006402703.1|	-	0.13	12.1	0.0	11	5.9	0.0	2.9	3	0	0	3	3	3	0	ANTAR	domain
Ribosomal_L34e	PF01199.18	gi|390938966|ref|YP_006402704.1|	-	3.3e-29	101.1	0.4	3.6e-29	100.9	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L34e
zf-C4_ClpX	PF06689.13	gi|390938966|ref|YP_006402704.1|	-	0.0081	16.0	0.1	1.1	9.3	0.0	2.3	2	0	0	2	2	2	2	ClpX	C4-type	zinc	finger
DZR	PF12773.7	gi|390938966|ref|YP_006402704.1|	-	0.042	13.9	0.1	0.064	13.3	0.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF4428	PF14471.6	gi|390938966|ref|YP_006402704.1|	-	0.083	12.8	0.8	3.4	7.7	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
7tm_6	PF02949.20	gi|390938967|ref|YP_006402705.1|	-	6.9e-06	25.3	0.6	8.1e-06	25.1	0.6	1.1	1	0	0	1	1	1	1	7tm	Odorant	receptor
DUF3270	PF11674.8	gi|390938967|ref|YP_006402705.1|	-	0.078	13.2	0.7	0.32	11.2	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3270)
DUF3087	PF11286.8	gi|390938967|ref|YP_006402705.1|	-	0.11	12.0	2.2	2.4	7.6	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3087)
SecY	PF00344.20	gi|390938968|ref|YP_006402706.1|	-	4.9e-60	203.4	20.1	6.6e-60	202.9	20.1	1.2	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.9	gi|390938968|ref|YP_006402706.1|	-	8.6e-10	38.3	0.9	8.6e-10	38.3	0.9	2.4	2	0	0	2	2	2	1	Plug	domain	of	Sec61p
Ribosomal_L27A	PF00828.19	gi|390938969|ref|YP_006402707.1|	-	9.9e-19	68.3	0.5	1.8e-18	67.4	0.5	1.4	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L18	PF17135.4	gi|390938969|ref|YP_006402707.1|	-	0.0015	17.9	0.0	0.0031	16.9	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L30	PF00327.20	gi|390938970|ref|YP_006402708.1|	-	2.9e-11	43.1	0.0	5.3e-11	42.2	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_S5	PF00333.20	gi|390938971|ref|YP_006402709.1|	-	3.6e-24	84.5	3.1	2.1e-23	82.1	1.2	2.4	2	0	0	2	2	2	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_S5_C	PF03719.15	gi|390938971|ref|YP_006402709.1|	-	2.6e-23	81.3	0.2	5.1e-23	80.3	0.0	1.5	2	0	0	2	2	2	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_L5e	PF17144.4	gi|390938972|ref|YP_006402710.1|	-	4.5e-30	104.8	2.6	2e-23	83.2	1.0	2.3	1	1	1	2	2	2	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18p	PF00861.22	gi|390938972|ref|YP_006402710.1|	-	5.5e-07	30.0	0.2	2.2e-06	28.0	0.1	1.8	2	0	0	2	2	2	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
Ribosomal_L18_c	PF14204.6	gi|390938972|ref|YP_006402710.1|	-	1.3e-05	26.1	0.0	2.3e-05	25.2	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	L18	C-terminal	region
MgsA_C	PF12002.8	gi|390938972|ref|YP_006402710.1|	-	0.044	13.7	0.1	5.4	6.9	0.0	2.2	1	1	0	2	2	2	0	MgsA	AAA+	ATPase	C	terminal
Ribosomal_L19e	PF01280.20	gi|390938973|ref|YP_006402711.1|	-	1.5e-52	177.5	6.8	1.7e-52	177.3	6.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
DUF4019	PF13211.6	gi|390938973|ref|YP_006402711.1|	-	0.033	14.6	0.1	0.056	13.8	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4019)
Ribosomal_L32e	PF01655.18	gi|390938974|ref|YP_006402712.1|	-	2.9e-31	108.1	0.0	3.9e-31	107.7	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L32
Ribosomal_L6	PF00347.23	gi|390938975|ref|YP_006402713.1|	-	4.6e-25	88.1	9.9	2e-16	60.4	1.6	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
DUF1521	PF07481.11	gi|390938975|ref|YP_006402713.1|	-	0.1	12.6	0.2	0.39	10.7	0.2	1.9	1	1	1	2	2	2	0	Domain	of	Unknown	Function	(DUF1521)
Ribosomal_S8	PF00410.19	gi|390938976|ref|YP_006402714.1|	-	5.7e-25	87.7	0.0	7.9e-25	87.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_S14	PF00253.21	gi|390938977|ref|YP_006402715.1|	-	2.9e-12	46.1	1.6	3.4e-12	45.9	1.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
zf-FPG_IleRS	PF06827.14	gi|390938977|ref|YP_006402715.1|	-	0.0095	15.8	2.2	0.014	15.3	2.2	1.3	1	0	0	1	1	1	1	Zinc	finger	found	in	FPG	and	IleRS
Zn_Tnp_IS1595	PF12760.7	gi|390938977|ref|YP_006402715.1|	-	0.017	15.1	1.9	0.023	14.7	1.9	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Ribosomal_L37ae	PF01780.19	gi|390938977|ref|YP_006402715.1|	-	0.024	14.7	0.3	0.028	14.5	0.3	1.1	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
zf-P11	PF03854.14	gi|390938977|ref|YP_006402715.1|	-	0.05	13.3	0.2	0.069	12.8	0.2	1.2	1	0	0	1	1	1	0	P-11	zinc	finger
Prim_Zn_Ribbon	PF08273.12	gi|390938977|ref|YP_006402715.1|	-	0.11	12.8	3.4	0.76	10.1	0.3	2.1	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
DUF1451	PF07295.11	gi|390938977|ref|YP_006402715.1|	-	0.11	12.5	0.1	0.14	12.2	0.1	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
zf-CCHC_2	PF13696.6	gi|390938977|ref|YP_006402715.1|	-	0.62	10.0	4.8	2.4	8.1	0.3	2.2	2	0	0	2	2	2	0	Zinc	knuckle
Ribosomal_L5_C	PF00673.21	gi|390938978|ref|YP_006402716.1|	-	4.6e-22	78.0	0.0	1.1e-21	76.7	0.0	1.7	2	0	0	2	2	2	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.19	gi|390938978|ref|YP_006402716.1|	-	1.4e-19	70.2	0.2	3.6e-19	68.8	0.2	1.8	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S4e	PF00900.20	gi|390938979|ref|YP_006402717.1|	-	1.3e-23	82.7	0.2	2.1e-23	82.0	0.2	1.4	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.12	gi|390938979|ref|YP_006402717.1|	-	3.2e-17	62.3	3.8	5.1e-17	61.7	3.8	1.3	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.25	gi|390938979|ref|YP_006402717.1|	-	1.8e-11	43.6	0.3	5.9e-11	41.9	0.0	2.0	2	0	0	2	2	2	1	S4	domain
40S_S4_C	PF16121.5	gi|390938979|ref|YP_006402717.1|	-	0.0003	20.4	0.0	0.00053	19.6	0.0	1.4	1	0	0	1	1	1	1	40S	ribosomal	protein	S4	C-terminus
KOW	PF00467.29	gi|390938979|ref|YP_006402717.1|	-	0.018	14.9	1.4	0.037	14.0	1.4	1.5	1	0	0	1	1	1	0	KOW	motif
S4_2	PF13275.6	gi|390938979|ref|YP_006402717.1|	-	0.029	14.2	0.3	0.084	12.7	0.0	1.9	2	0	0	2	2	2	0	S4	domain
3HCDH	PF00725.22	gi|390938979|ref|YP_006402717.1|	-	0.058	14.0	0.0	0.094	13.3	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
Ribosomal_L26	PF16906.5	gi|390938980|ref|YP_006402718.1|	-	2.8e-30	104.6	0.4	3.5e-30	104.3	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|390938980|ref|YP_006402718.1|	-	3.4e-11	42.7	3.0	3.4e-11	42.7	3.0	1.6	2	0	0	2	2	2	1	KOW	motif
MS_channel	PF00924.18	gi|390938980|ref|YP_006402718.1|	-	0.23	11.0	0.1	0.3	10.6	0.1	1.2	1	0	0	1	1	1	0	Mechanosensitive	ion	channel
Ribosomal_L14	PF00238.19	gi|390938981|ref|YP_006402719.1|	-	9.1e-37	125.9	0.0	1.1e-36	125.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_S17	PF00366.20	gi|390938982|ref|YP_006402720.1|	-	4.5e-27	93.9	3.0	5.7e-27	93.6	3.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_S17_N	PF16205.5	gi|390938982|ref|YP_006402720.1|	-	0.016	15.5	1.0	0.03	14.7	0.0	1.9	2	0	0	2	2	2	0	Ribosomal_S17	N-terminal
zf-C3H1	PF10650.9	gi|390938982|ref|YP_006402720.1|	-	0.084	12.6	0.9	0.16	11.7	0.9	1.4	1	0	0	1	1	1	0	Putative	zinc-finger	domain
UPF0086	PF01868.16	gi|390938983|ref|YP_006402721.1|	-	2.6e-19	68.9	0.0	2.9e-19	68.7	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_L29	PF00831.23	gi|390938984|ref|YP_006402722.1|	-	7.6e-19	67.4	5.4	9.7e-19	67.1	5.4	1.1	1	0	0	1	1	1	1	Ribosomal	L29	protein
Ribosomal_S3_C	PF00189.20	gi|390938985|ref|YP_006402723.1|	-	5.5e-23	81.3	0.9	8.6e-23	80.7	0.9	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|390938985|ref|YP_006402723.1|	-	2.3e-13	49.7	0.0	4.4e-13	48.8	0.0	1.5	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|390938985|ref|YP_006402723.1|	-	0.0021	17.8	0.5	0.0072	16.1	0.2	2.1	2	0	0	2	2	2	1	KH	domain
KH_4	PF13083.6	gi|390938985|ref|YP_006402723.1|	-	0.0057	16.5	0.0	0.012	15.4	0.0	1.7	1	0	0	1	1	1	1	KH	domain
Ribosomal_L22	PF00237.19	gi|390938986|ref|YP_006402724.1|	-	9.6e-30	102.9	0.2	1.2e-29	102.6	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S19	PF00203.21	gi|390938987|ref|YP_006402725.1|	-	6.8e-35	118.8	0.3	8.8e-35	118.4	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S19
bZIP_Maf	PF03131.17	gi|390938987|ref|YP_006402725.1|	-	0.0014	19.1	0.8	0.0025	18.3	0.8	1.3	1	0	0	1	1	1	1	bZIP	Maf	transcription	factor
DUF913	PF06025.12	gi|390938987|ref|YP_006402725.1|	-	0.0058	15.6	0.0	0.0058	15.6	0.0	1.0	1	0	0	1	1	1	1	Domain	of	Unknown	Function	(DUF913)
VWA_CoxE	PF05762.14	gi|390938988|ref|YP_006402726.1|	-	1.8e-10	40.6	0.1	2.9e-10	39.9	0.1	1.2	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
VWA_2	PF13519.6	gi|390938988|ref|YP_006402726.1|	-	0.00057	20.5	0.1	0.0025	18.5	0.1	2.0	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
PALP	PF00291.25	gi|390938988|ref|YP_006402726.1|	-	0.022	14.2	0.0	0.039	13.4	0.0	1.4	1	0	0	1	1	1	0	Pyridoxal-phosphate	dependent	enzyme
LpxI_N	PF17930.1	gi|390938988|ref|YP_006402726.1|	-	0.12	12.3	0.1	17	5.3	0.0	2.6	2	0	0	2	2	2	0	LpxI	N-terminal	domain
Ribosomal_L18_c	PF14204.6	gi|390938988|ref|YP_006402726.1|	-	0.19	12.7	0.0	0.56	11.2	0.0	1.8	1	0	0	1	1	1	0	Ribosomal	L18	C-terminal	region
AAA_5	PF07728.14	gi|390938989|ref|YP_006402727.1|	-	1.3e-15	57.6	0.0	2e-15	57.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.11	gi|390938989|ref|YP_006402727.1|	-	0.00025	20.9	0.0	0.0037	17.1	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA	PF00004.29	gi|390938989|ref|YP_006402727.1|	-	0.0071	16.8	0.1	0.036	14.5	0.1	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|390938989|ref|YP_006402727.1|	-	0.011	15.4	0.0	4.6	6.9	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_30	PF13604.6	gi|390938989|ref|YP_006402727.1|	-	0.024	14.4	0.0	0.19	11.4	0.0	2.1	1	1	1	2	2	2	0	AAA	domain
AAA_19	PF13245.6	gi|390938989|ref|YP_006402727.1|	-	0.073	13.4	0.0	1.2	9.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|390938989|ref|YP_006402727.1|	-	0.081	12.4	0.0	0.37	10.3	0.0	2.0	3	0	0	3	3	3	0	P-loop	containing	dynein	motor	region
Mg_chelatase	PF01078.21	gi|390938989|ref|YP_006402727.1|	-	0.17	11.3	0.0	4	6.8	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
Ribosomal_L2_C	PF03947.18	gi|390938990|ref|YP_006402728.1|	-	2.3e-42	144.1	3.0	3.8e-42	143.5	3.0	1.3	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|390938990|ref|YP_006402728.1|	-	1.6e-12	47.2	0.0	4.2e-12	45.8	0.0	1.8	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	RNA	binding	domain
ProQ_C	PF17516.2	gi|390938990|ref|YP_006402728.1|	-	0.041	13.3	0.7	25	4.4	0.0	3.2	2	1	1	3	3	3	0	ProQ	C-terminal	domain
Ribosomal_L23	PF00276.20	gi|390938991|ref|YP_006402729.1|	-	2.7e-20	72.5	2.2	2e-19	69.7	2.2	1.9	1	1	0	1	1	1	1	Ribosomal	protein	L23
ASL_C	PF08328.11	gi|390938991|ref|YP_006402729.1|	-	0.04	14.0	0.1	0.045	13.9	0.1	1.1	1	0	0	1	1	1	0	Adenylosuccinate	lyase	C-terminal
FliJ	PF02050.16	gi|390938991|ref|YP_006402729.1|	-	0.11	12.7	0.0	0.13	12.4	0.0	1.0	1	0	0	1	1	1	0	Flagellar	FliJ	protein
Ribosomal_L4	PF00573.22	gi|390938992|ref|YP_006402730.1|	-	8.1e-36	123.5	0.0	9.4e-36	123.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L3	PF00297.22	gi|390938993|ref|YP_006402731.1|	-	1e-65	222.2	0.8	1.6e-44	152.4	0.0	2.9	2	1	0	2	2	2	2	Ribosomal	protein	L3
Methyltrn_RNA_3	PF02598.17	gi|390938994|ref|YP_006402732.1|	-	2.1e-36	125.9	0.0	4.7e-35	121.5	0.0	2.0	1	1	0	1	1	1	1	Putative	RNA	methyltransferase
YpjP	PF14005.6	gi|390938994|ref|YP_006402732.1|	-	0.079	13.0	0.4	0.26	11.3	0.3	1.8	2	0	0	2	2	2	0	YpjP-like	protein
PAPS_reduct	PF01507.19	gi|390938995|ref|YP_006402733.1|	-	2.9e-44	151.2	0.0	5.4e-44	150.3	0.0	1.5	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
Diphthami_syn_2	PF01902.17	gi|390938995|ref|YP_006402733.1|	-	0.062	12.8	0.1	3	7.3	0.0	2.7	3	0	0	3	3	3	0	Diphthamide	synthase
QueC	PF06508.13	gi|390938995|ref|YP_006402733.1|	-	0.14	11.6	0.4	0.72	9.3	0.0	2.0	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
DEAD	PF00270.29	gi|390938996|ref|YP_006402734.1|	-	2.1e-28	99.3	0.0	3.5e-26	92.0	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|390938996|ref|YP_006402734.1|	-	5.9e-21	74.9	0.0	3.8e-19	69.1	0.0	2.5	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD_assoc	PF08494.11	gi|390938996|ref|YP_006402734.1|	-	2.8e-07	30.6	0.0	6.5e-07	29.3	0.0	1.5	1	0	0	1	1	1	1	DEAD/H	associated
ResIII	PF04851.15	gi|390938996|ref|YP_006402734.1|	-	5.8e-06	26.4	0.0	1.2e-05	25.4	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.6	gi|390938996|ref|YP_006402734.1|	-	0.00024	21.4	0.0	0.0012	19.2	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
UvrD-helicase	PF00580.21	gi|390938996|ref|YP_006402734.1|	-	0.0035	16.9	0.0	0.012	15.1	0.0	1.8	2	0	0	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
HypA	PF01155.19	gi|390938996|ref|YP_006402734.1|	-	0.082	12.9	0.0	0.2	11.7	0.0	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TPR_5	PF12688.7	gi|390938998|ref|YP_006402736.1|	-	0.083	13.1	0.0	0.15	12.3	0.0	1.4	1	0	0	1	1	1	0	Tetratrico	peptide	repeat
TarH	PF02203.15	gi|390938998|ref|YP_006402736.1|	-	0.14	12.1	0.0	0.16	11.9	0.0	1.1	1	0	0	1	1	1	0	Tar	ligand	binding	domain	homologue
PCNA_N	PF00705.18	gi|390939000|ref|YP_006402738.1|	-	9.1e-12	44.8	0.2	2.2e-11	43.6	0.1	1.6	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|390939000|ref|YP_006402738.1|	-	3.5e-09	36.9	0.4	1.9e-06	28.0	0.1	3.6	2	2	1	3	3	3	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Hus1	PF04005.12	gi|390939000|ref|YP_006402738.1|	-	0.00031	19.9	0.0	0.0006	19.0	0.0	1.8	1	1	0	1	1	1	1	Hus1-like	protein
Pox_TAP	PF03355.14	gi|390939000|ref|YP_006402738.1|	-	0.026	14.1	0.1	1.1	8.7	0.1	2.2	2	0	0	2	2	2	0	Viral	Trans-Activator	Protein
POR	PF01558.18	gi|390939001|ref|YP_006402739.1|	-	4.2e-40	137.7	0.5	4.9e-40	137.5	0.5	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Fer4	PF00037.27	gi|390939002|ref|YP_006402740.1|	-	1.1e-17	63.0	16.3	7e-10	38.3	6.0	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|390939002|ref|YP_006402740.1|	-	1.5e-11	44.3	11.2	1.8e-11	44.0	11.2	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|390939002|ref|YP_006402740.1|	-	3.5e-11	42.7	17.0	7.7e-06	25.8	5.6	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390939002|ref|YP_006402740.1|	-	7.1e-10	39.3	12.6	1.3e-09	38.5	12.6	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|390939002|ref|YP_006402740.1|	-	1.5e-09	37.8	12.3	7.1e-05	22.8	2.1	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|390939002|ref|YP_006402740.1|	-	2.4e-09	38.0	9.9	2.3e-05	25.2	1.9	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|390939002|ref|YP_006402740.1|	-	3.3e-08	33.6	9.8	4.7e-08	33.1	9.8	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|390939002|ref|YP_006402740.1|	-	4.5e-08	32.7	13.6	0.00011	22.1	3.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|390939002|ref|YP_006402740.1|	-	5.4e-08	32.7	16.4	0.0007	19.9	4.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|390939002|ref|YP_006402740.1|	-	3.5e-06	27.3	7.0	0.0076	16.7	0.8	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|390939002|ref|YP_006402740.1|	-	6.9e-05	23.3	7.5	0.077	13.5	1.6	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|390939002|ref|YP_006402740.1|	-	0.0023	18.7	19.3	0.11	13.5	7.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|390939002|ref|YP_006402740.1|	-	0.0066	17.0	11.8	0.45	11.1	1.8	2.5	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|390939002|ref|YP_006402740.1|	-	0.0075	17.0	16.8	0.055	14.2	5.0	3.5	2	2	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|390939002|ref|YP_006402740.1|	-	0.082	13.8	11.8	0.2	12.5	2.2	2.1	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|390939002|ref|YP_006402740.1|	-	4.6	7.5	12.3	15	5.8	12.3	1.7	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
POR_N	PF01855.19	gi|390939003|ref|YP_006402741.1|	-	1.5e-67	227.8	0.3	1.9e-67	227.4	0.3	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|390939003|ref|YP_006402741.1|	-	4.8e-23	81.4	0.0	1.2e-22	80.2	0.0	1.7	2	0	0	2	2	2	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|390939003|ref|YP_006402741.1|	-	0.0004	20.3	0.0	0.00069	19.5	0.0	1.4	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|390939003|ref|YP_006402741.1|	-	0.032	13.8	0.1	0.056	13.1	0.1	1.4	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
PCIF1_WW	PF12237.8	gi|390939003|ref|YP_006402741.1|	-	0.096	12.3	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Phosphorylated	CTD	interacting	factor	1	WW	domain
TPP_enzyme_C	PF02775.21	gi|390939004|ref|YP_006402742.1|	-	2.3e-24	85.9	0.2	3.3e-24	85.4	0.2	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|390939004|ref|YP_006402742.1|	-	0.0091	15.2	0.2	0.016	14.5	0.2	1.3	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
Sec61_beta	PF03911.16	gi|390939005|ref|YP_006402743.1|	-	2e-13	50.1	0.9	2.3e-13	49.9	0.9	1.1	1	0	0	1	1	1	1	Sec61beta	family
MazG	PF03819.17	gi|390939006|ref|YP_006402744.1|	-	4.4e-12	46.0	0.6	6.2e-12	45.5	0.6	1.1	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
MazG-like	PF12643.7	gi|390939006|ref|YP_006402744.1|	-	0.00057	20.1	0.1	0.00079	19.6	0.1	1.1	1	0	0	1	1	1	1	MazG-like	family
PRA-PH	PF01503.17	gi|390939006|ref|YP_006402744.1|	-	0.0006	20.2	0.4	0.00069	20.0	0.4	1.1	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
PG_binding_1	PF01471.18	gi|390939006|ref|YP_006402744.1|	-	0.043	14.0	0.0	0.083	13.1	0.0	1.4	1	0	0	1	1	1	0	Putative	peptidoglycan	binding	domain
PcrB	PF01884.17	gi|390939007|ref|YP_006402745.1|	-	1.5e-50	171.8	0.0	2e-50	171.4	0.0	1.0	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|390939007|ref|YP_006402745.1|	-	2.1e-05	24.1	0.0	3.1e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|390939007|ref|YP_006402745.1|	-	0.0042	16.3	0.1	0.006	15.8	0.1	1.2	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
IMPDH	PF00478.25	gi|390939007|ref|YP_006402745.1|	-	0.036	13.1	0.1	0.077	12.0	0.0	1.5	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
Ribul_P_3_epim	PF00834.19	gi|390939007|ref|YP_006402745.1|	-	0.05	13.0	0.0	0.1	11.9	0.0	1.5	1	0	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
Elf1	PF05129.13	gi|390939008|ref|YP_006402746.1|	-	8.5e-20	70.6	0.2	1.1e-19	70.3	0.2	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
TF_Zn_Ribbon	PF08271.12	gi|390939008|ref|YP_006402746.1|	-	1.6e-05	24.3	0.6	4.7e-05	22.8	0.6	1.8	1	1	0	1	1	1	1	TFIIB	zinc-binding
Ribosomal_L32p	PF01783.23	gi|390939008|ref|YP_006402746.1|	-	0.004	17.4	2.4	0.014	15.6	0.3	2.1	2	0	0	2	2	2	1	Ribosomal	L32p	protein	family
zf-ribbon_3	PF13248.6	gi|390939008|ref|YP_006402746.1|	-	0.009	15.4	1.4	0.29	10.6	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
GATA	PF00320.27	gi|390939008|ref|YP_006402746.1|	-	0.0099	15.5	0.5	0.016	14.8	0.5	1.4	1	0	0	1	1	1	1	GATA	zinc	finger
TFIIS_C	PF01096.18	gi|390939008|ref|YP_006402746.1|	-	0.011	15.5	0.5	0.016	15.0	0.5	1.3	1	0	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
Lar_restr_allev	PF14354.6	gi|390939008|ref|YP_006402746.1|	-	0.017	15.5	0.1	0.026	14.9	0.1	1.4	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
CxC7	PF18866.1	gi|390939008|ref|YP_006402746.1|	-	0.048	13.8	1.3	4.4	7.5	0.1	2.2	1	1	1	2	2	2	0	CxC7	like	cysteine	cluster	associated	with	KDZ	transposases
Zn_Tnp_IS1595	PF12760.7	gi|390939008|ref|YP_006402746.1|	-	0.066	13.2	1.9	0.23	11.5	2.0	1.8	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-RRPl_C4	PF17026.5	gi|390939008|ref|YP_006402746.1|	-	0.093	12.8	0.9	0.2	11.8	1.0	1.5	1	1	0	1	1	1	0	Putative	ribonucleoprotein	zinc-finger	pf	C4	type
MvaI_BcnI	PF15515.6	gi|390939008|ref|YP_006402746.1|	-	0.1	12.4	0.0	0.13	12.0	0.0	1.1	1	0	0	1	1	1	0	MvaI/BcnI	restriction	endonuclease	family
Ogr_Delta	PF04606.12	gi|390939008|ref|YP_006402746.1|	-	0.11	12.5	1.9	0.2	11.6	1.9	1.4	1	0	0	1	1	1	0	Ogr/Delta-like	zinc	finger
zf-RRN7	PF11781.8	gi|390939008|ref|YP_006402746.1|	-	0.12	12.1	1.7	0.3	10.8	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DUF1610	PF07754.11	gi|390939008|ref|YP_006402746.1|	-	0.13	12.3	1.3	0.13	12.3	1.3	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf_UBZ	PF18439.1	gi|390939008|ref|YP_006402746.1|	-	0.18	11.4	0.3	15	5.3	0.0	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_4	PF13717.6	gi|390939008|ref|YP_006402746.1|	-	0.18	11.7	1.1	16	5.5	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
CemA	PF03040.14	gi|390939008|ref|YP_006402746.1|	-	0.22	11.4	0.0	0.26	11.2	0.0	1.1	1	0	0	1	1	1	0	CemA	family
Zn_ribbon_SprT	PF17283.2	gi|390939008|ref|YP_006402746.1|	-	0.34	10.9	4.7	1	9.3	4.4	1.9	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
zf-Mss51	PF13824.6	gi|390939008|ref|YP_006402746.1|	-	0.42	10.8	1.9	5.5	7.2	0.2	2.2	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zinc_ribbon_2	PF13240.6	gi|390939008|ref|YP_006402746.1|	-	0.49	10.2	3.8	1.9	8.3	0.2	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
SWIM	PF04434.17	gi|390939009|ref|YP_006402747.1|	-	0.00068	19.2	0.0	0.0013	18.4	0.0	1.4	1	0	0	1	1	1	1	SWIM	zinc	finger
Kelch_2	PF07646.15	gi|390939010|ref|YP_006402748.1|	-	0.84	9.7	2.7	17	5.6	0.2	3.5	3	0	0	3	3	3	0	Kelch	motif
Kelch_6	PF13964.6	gi|390939010|ref|YP_006402748.1|	-	8.7	6.8	9.9	87	3.6	0.3	5.1	5	0	0	5	5	5	0	Kelch	motif
ATPase_2	PF01637.18	gi|390939011|ref|YP_006402749.1|	-	6.1e-17	62.3	0.3	7.5e-17	62.0	0.3	1.1	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA	PF00004.29	gi|390939011|ref|YP_006402749.1|	-	0.085	13.3	0.1	0.13	12.7	0.1	1.3	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
S_4TM	PF18159.1	gi|390939012|ref|YP_006402750.1|	-	1	8.6	5.3	6.7	5.9	0.5	2.1	2	0	0	2	2	2	0	SMODS-associating	4TM	effector	domain
ABC_tran	PF00005.27	gi|390939015|ref|YP_006402753.1|	-	1.3e-18	67.8	0.0	2e-18	67.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|390939015|ref|YP_006402753.1|	-	2.1e-05	24.5	0.0	0.0057	16.5	0.0	2.1	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|390939015|ref|YP_006402753.1|	-	6.3e-05	22.9	0.7	0.0038	17.1	0.1	2.4	2	1	0	2	2	2	1	RsgA	GTPase
AAA_29	PF13555.6	gi|390939015|ref|YP_006402753.1|	-	0.00033	20.3	1.2	0.00045	19.9	0.3	1.7	2	0	0	2	2	1	1	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.12	gi|390939015|ref|YP_006402753.1|	-	0.00046	20.1	0.1	0.0019	18.1	0.1	2.1	1	1	0	1	1	1	1	NACHT	domain
AAA_16	PF13191.6	gi|390939015|ref|YP_006402753.1|	-	0.00055	20.4	0.0	0.00089	19.7	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|390939015|ref|YP_006402753.1|	-	0.00092	18.5	0.4	0.5	9.5	0.0	2.1	2	0	0	2	2	2	2	NB-ARC	domain
IstB_IS21	PF01695.17	gi|390939015|ref|YP_006402753.1|	-	0.0041	16.9	0.2	1	9.0	0.0	2.1	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
SMC_N	PF02463.19	gi|390939015|ref|YP_006402753.1|	-	0.0049	16.3	0.0	0.18	11.2	0.0	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.6	gi|390939015|ref|YP_006402753.1|	-	0.0069	16.6	0.0	0.047	13.8	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
MMR_HSR1	PF01926.23	gi|390939015|ref|YP_006402753.1|	-	0.013	15.6	0.1	0.078	13.1	0.1	2.2	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|390939015|ref|YP_006402753.1|	-	0.014	15.7	0.0	0.02	15.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|390939015|ref|YP_006402753.1|	-	0.014	15.1	0.0	0.014	15.1	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|390939015|ref|YP_006402753.1|	-	0.021	15.2	0.0	0.035	14.5	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Mg_chelatase	PF01078.21	gi|390939015|ref|YP_006402753.1|	-	0.022	14.2	0.1	0.036	13.4	0.1	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_23	PF13476.6	gi|390939015|ref|YP_006402753.1|	-	0.027	15.0	0.6	0.044	14.3	0.6	1.3	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|390939015|ref|YP_006402753.1|	-	0.037	14.5	0.1	0.061	13.8	0.1	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.6	gi|390939015|ref|YP_006402753.1|	-	0.037	14.1	0.1	0.26	11.3	0.0	2.1	2	1	1	3	3	3	0	AAA	domain
AAA_30	PF13604.6	gi|390939015|ref|YP_006402753.1|	-	0.047	13.4	0.1	0.094	12.4	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|390939015|ref|YP_006402753.1|	-	0.059	13.3	0.0	0.088	12.7	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
TMEM206	PF15122.6	gi|390939015|ref|YP_006402753.1|	-	0.079	12.1	0.0	0.16	11.1	0.0	1.4	2	0	0	2	2	2	0	TMEM206	protein	family
AAA_5	PF07728.14	gi|390939015|ref|YP_006402753.1|	-	0.086	12.8	0.1	0.16	11.9	0.1	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.15	gi|390939015|ref|YP_006402753.1|	-	0.12	12.3	0.0	0.27	11.1	0.0	1.6	1	0	0	1	1	1	0	NTPase
SRP54	PF00448.22	gi|390939015|ref|YP_006402753.1|	-	0.12	12.0	0.1	0.28	10.8	0.1	1.6	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
RtcB	PF01139.17	gi|390939017|ref|YP_006402755.1|	-	8.4e-165	548.9	0.0	9.6e-165	548.7	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
tRNA-synt_His	PF13393.6	gi|390939018|ref|YP_006402756.1|	-	8.6e-50	169.8	0.1	1e-49	169.5	0.1	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.25	gi|390939018|ref|YP_006402756.1|	-	8.9e-13	48.6	0.0	1.2e-12	48.2	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|390939018|ref|YP_006402756.1|	-	8.5e-06	25.8	0.0	2.2e-05	24.5	0.0	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2d	PF01409.20	gi|390939018|ref|YP_006402756.1|	-	0.0011	18.5	0.0	0.0033	17.0	0.0	1.8	1	1	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.20	gi|390939018|ref|YP_006402756.1|	-	0.36	9.9	2.5	1	8.3	0.8	2.3	2	1	0	2	2	2	0	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_int_endo	PF01974.17	gi|390939019|ref|YP_006402757.1|	-	1.8e-09	37.6	0.1	3.5e-09	36.6	0.1	1.5	1	1	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|390939019|ref|YP_006402757.1|	-	3e-05	23.6	0.0	6.5e-05	22.5	0.0	1.6	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	N-terminal	domain
Sen15	PF09631.10	gi|390939019|ref|YP_006402757.1|	-	0.06	13.7	0.0	0.12	12.6	0.0	1.5	1	0	0	1	1	1	0	Sen15	protein
IF-2B	PF01008.17	gi|390939020|ref|YP_006402758.1|	-	7.9e-81	271.3	0.1	9.4e-81	271.1	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
ProRS-C_2	PF09181.10	gi|390939020|ref|YP_006402758.1|	-	0.075	13.2	0.5	21	5.3	0.1	2.9	3	0	0	3	3	3	0	Prolyl-tRNA	synthetase,	C-terminal
Arc_PepC_II	PF06847.11	gi|390939021|ref|YP_006402759.1|	-	2.1e-22	79.5	0.2	5.3e-22	78.1	0.2	1.7	1	0	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|390939021|ref|YP_006402759.1|	-	1.4e-08	35.1	3.8	1.4e-08	35.1	3.8	1.7	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
CcmD	PF04995.14	gi|390939021|ref|YP_006402759.1|	-	1.2	9.2	4.0	20	5.4	1.0	3.3	3	0	0	3	3	3	0	Heme	exporter	protein	D	(CcmD)
DUF5313	PF17240.2	gi|390939021|ref|YP_006402759.1|	-	4	7.9	5.8	5.8	7.4	0.8	2.6	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5313)
Rad51	PF08423.11	gi|390939022|ref|YP_006402760.1|	-	2.1e-94	315.6	0.0	2.6e-94	315.3	0.0	1.1	1	0	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|390939022|ref|YP_006402760.1|	-	3.4e-18	66.1	0.0	4.6e-18	65.6	0.0	1.1	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
ATPase	PF06745.13	gi|390939022|ref|YP_006402760.1|	-	1e-10	41.4	0.0	1.9e-10	40.5	0.0	1.4	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|390939022|ref|YP_006402760.1|	-	3.7e-10	39.7	0.1	7.6e-09	35.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
HHH_5	PF14520.6	gi|390939022|ref|YP_006402760.1|	-	0.00018	22.0	0.8	0.00039	21.0	0.2	2.0	2	0	0	2	2	1	1	Helix-hairpin-helix	domain
IMS_HHH	PF11798.8	gi|390939022|ref|YP_006402760.1|	-	0.0015	18.8	0.0	0.0045	17.2	0.0	1.9	1	0	0	1	1	1	1	IMS	family	HHH	motif
HTH_31	PF13560.6	gi|390939022|ref|YP_006402760.1|	-	0.0044	17.3	0.2	0.25	11.7	0.0	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
Sigma70_r3	PF04539.16	gi|390939022|ref|YP_006402760.1|	-	0.016	15.3	0.5	0.72	10.0	0.1	2.7	3	0	0	3	3	3	0	Sigma-70	region	3
PAXNEB	PF05625.11	gi|390939022|ref|YP_006402760.1|	-	0.023	13.9	0.3	3.1	6.9	0.2	2.2	2	0	0	2	2	2	0	PAXNEB	protein
HTH_3	PF01381.22	gi|390939022|ref|YP_006402760.1|	-	0.036	14.1	0.1	7.4	6.7	0.0	3.2	3	0	0	3	3	3	0	Helix-turn-helix
LPD22	PF18834.1	gi|390939022|ref|YP_006402760.1|	-	0.04	14.1	0.1	4.4	7.6	0.0	2.4	2	0	0	2	2	2	0	Large	polyvalent	protein	associated	domain	22
AAA_18	PF13238.6	gi|390939022|ref|YP_006402760.1|	-	0.046	14.3	0.0	0.15	12.6	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|390939022|ref|YP_006402760.1|	-	0.05	14.1	0.0	0.13	12.8	0.0	1.7	2	0	0	2	2	2	0	ABC	transporter
AAA_22	PF13401.6	gi|390939022|ref|YP_006402760.1|	-	0.081	13.2	0.0	0.16	12.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
Cdd1	PF11731.8	gi|390939022|ref|YP_006402760.1|	-	0.13	12.5	0.0	0.27	11.5	0.0	1.5	1	0	0	1	1	1	0	Pathogenicity	locus
tRNA-Thr_ED	PF08915.11	gi|390939023|ref|YP_006402761.1|	-	2.4e-45	153.9	0.0	5.2e-45	152.9	0.0	1.6	1	0	0	1	1	1	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|390939023|ref|YP_006402761.1|	-	1.8e-27	95.3	0.6	4.2e-27	94.1	0.6	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|390939023|ref|YP_006402761.1|	-	6e-16	58.9	0.1	1.7e-15	57.5	0.1	1.7	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
NOB1_Zn_bind	PF08772.11	gi|390939024|ref|YP_006402762.1|	-	0.00019	21.6	0.9	0.00033	20.8	0.9	1.5	1	1	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
HypA	PF01155.19	gi|390939024|ref|YP_006402762.1|	-	0.0034	17.4	0.1	0.004	17.2	0.1	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-LITAF-like	PF10601.9	gi|390939024|ref|YP_006402762.1|	-	0.0036	17.5	3.2	0.014	15.6	3.2	1.8	1	1	0	1	1	1	1	LITAF-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|390939024|ref|YP_006402762.1|	-	0.0071	16.4	0.8	0.011	15.9	0.8	1.4	1	1	0	1	1	1	1	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|390939024|ref|YP_006402762.1|	-	0.0099	15.4	0.5	0.33	10.5	0.0	2.1	2	0	0	2	2	2	1	TFIIB	zinc-binding
zf-RING_7	PF02591.15	gi|390939024|ref|YP_006402762.1|	-	0.012	15.8	1.0	0.12	12.6	0.1	2.1	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
DUF3797	PF12677.7	gi|390939024|ref|YP_006402762.1|	-	0.017	15.0	0.7	0.017	15.0	0.7	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Ogr_Delta	PF04606.12	gi|390939024|ref|YP_006402762.1|	-	0.018	15.0	0.3	0.023	14.7	0.3	1.2	1	0	0	1	1	1	0	Ogr/Delta-like	zinc	finger
zf-ribbon_3	PF13248.6	gi|390939024|ref|YP_006402762.1|	-	0.019	14.4	2.2	0.43	10.1	0.5	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF4379	PF14311.6	gi|390939024|ref|YP_006402762.1|	-	0.035	14.5	1.5	0.048	14.0	1.5	1.3	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
Sgf11	PF08209.11	gi|390939024|ref|YP_006402762.1|	-	0.035	13.7	2.7	0.067	12.8	0.4	2.0	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
UPF0547	PF10571.9	gi|390939024|ref|YP_006402762.1|	-	0.037	14.1	1.4	1.2	9.3	0.0	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF1610	PF07754.11	gi|390939024|ref|YP_006402762.1|	-	0.044	13.8	0.9	0.044	13.8	0.9	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
DUF35_N	PF12172.8	gi|390939024|ref|YP_006402762.1|	-	0.097	12.6	2.1	1.2	9.1	0.2	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Ribosomal_L33	PF00471.20	gi|390939024|ref|YP_006402762.1|	-	0.27	11.7	4.7	2.3	8.8	4.7	2.0	1	1	0	1	1	1	0	Ribosomal	protein	L33
Terminase_GpA	PF05876.12	gi|390939024|ref|YP_006402762.1|	-	0.3	9.6	1.7	0.33	9.4	1.7	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zinc_ribbon_2	PF13240.6	gi|390939024|ref|YP_006402762.1|	-	0.32	10.8	7.6	0.49	10.2	1.7	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|390939024|ref|YP_006402762.1|	-	0.38	10.6	4.4	7.5	6.5	1.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Ribosomal_L37e	PF01907.19	gi|390939024|ref|YP_006402762.1|	-	2.4	8.4	6.9	0.54	10.4	0.9	2.1	1	1	1	2	2	2	0	Ribosomal	protein	L37e
TP6A_N	PF04406.14	gi|390939025|ref|YP_006402763.1|	-	2.1e-21	75.7	0.1	3.8e-21	74.8	0.1	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
DUF2399	PF09664.10	gi|390939025|ref|YP_006402763.1|	-	0.0098	15.8	0.0	0.019	14.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	C-terminus	(DUF2399)
Topo-VIb_trans	PF09239.11	gi|390939026|ref|YP_006402764.1|	-	2e-61	206.5	0.0	3.5e-61	205.7	0.0	1.4	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c	PF02518.26	gi|390939026|ref|YP_006402764.1|	-	9.4e-13	48.6	0.0	4.9e-12	46.3	0.0	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.6	gi|390939026|ref|YP_006402764.1|	-	3.4e-11	43.1	0.0	5.9e-11	42.3	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FbpA	PF05833.11	gi|390939026|ref|YP_006402764.1|	-	3.9e-07	29.2	0.1	9.6e-06	24.6	0.0	2.1	2	0	0	2	2	2	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
Ribosomal_S13	PF00416.22	gi|390939026|ref|YP_006402764.1|	-	0.0017	18.8	0.0	0.0046	17.4	0.0	1.7	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
HIT	PF01230.23	gi|390939027|ref|YP_006402765.1|	-	7.7e-13	49.0	0.0	1.2e-12	48.4	0.0	1.2	1	0	0	1	1	1	1	HIT	domain
CwfJ_C_1	PF04677.15	gi|390939027|ref|YP_006402765.1|	-	8e-07	29.0	0.0	1.2e-06	28.4	0.0	1.4	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
DcpS_C	PF11969.8	gi|390939027|ref|YP_006402765.1|	-	3.8e-06	27.4	0.0	5.9e-06	26.7	0.0	1.2	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
Myosin_head	PF00063.21	gi|390939028|ref|YP_006402766.1|	-	0.047	11.9	0.0	0.047	11.9	0.0	1.0	1	0	0	1	1	1	0	Myosin	head	(motor	domain)
Ribosomal_L24e	PF01246.20	gi|390939029|ref|YP_006402767.1|	-	0.0025	18.0	0.3	0.0045	17.2	0.3	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L24e
FYVE	PF01363.21	gi|390939029|ref|YP_006402767.1|	-	0.0077	16.3	0.1	0.0089	16.1	0.1	1.2	1	0	0	1	1	1	1	FYVE	zinc	finger
zf-FCS	PF06467.14	gi|390939029|ref|YP_006402767.1|	-	0.041	13.8	0.1	0.053	13.5	0.1	1.2	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Ribosomal_S14	PF00253.21	gi|390939029|ref|YP_006402767.1|	-	0.075	12.8	0.5	0.17	11.7	0.5	1.6	1	0	0	1	1	1	0	Ribosomal	protein	S14p/S29e
Vps39_2	PF10367.9	gi|390939029|ref|YP_006402767.1|	-	0.13	12.7	1.1	2.7	8.5	0.1	2.0	1	1	1	2	2	2	0	Vacuolar	sorting	protein	39	domain	2
DUF2208	PF09973.9	gi|390939030|ref|YP_006402768.1|	-	8e-66	222.0	10.2	9.1e-66	221.8	10.2	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2208)
DUF4131	PF13567.6	gi|390939030|ref|YP_006402768.1|	-	0.16	11.6	4.5	1.1	8.9	0.8	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF3784	PF12650.7	gi|390939030|ref|YP_006402768.1|	-	1.1	9.5	16.9	1.5	9.1	0.6	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3784)
DUF3488	PF11992.8	gi|390939030|ref|YP_006402768.1|	-	1.1	8.1	9.6	1.4	7.8	8.4	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3488)
DUF72	PF01904.18	gi|390939032|ref|YP_006402770.1|	-	7.1e-32	111.3	0.0	9.3e-32	110.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
AP_endonuc_2	PF01261.24	gi|390939032|ref|YP_006402770.1|	-	0.057	12.9	0.0	0.22	10.9	0.0	2.0	2	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
ComA	PF02679.15	gi|390939032|ref|YP_006402770.1|	-	0.16	11.4	0.0	0.23	10.9	0.0	1.3	1	0	0	1	1	1	0	(2R)-phospho-3-sulfolactate	synthase	(ComA)
ACT_4	PF13291.6	gi|390939033|ref|YP_006402771.1|	-	5.3e-07	30.1	0.1	1.1e-06	29.1	0.1	1.6	1	0	0	1	1	1	1	ACT	domain
MazE_antitoxin	PF04014.18	gi|390939033|ref|YP_006402771.1|	-	1e-05	25.4	0.1	2.2e-05	24.3	0.1	1.6	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
ACT	PF01842.25	gi|390939033|ref|YP_006402771.1|	-	2.7e-05	23.8	0.1	7.4e-05	22.4	0.0	1.8	2	0	0	2	2	2	1	ACT	domain
ACT_6	PF13740.6	gi|390939033|ref|YP_006402771.1|	-	0.00064	19.7	0.0	0.001	19.0	0.0	1.4	1	0	0	1	1	1	1	ACT	domain
MraZ	PF02381.18	gi|390939033|ref|YP_006402771.1|	-	0.016	15.2	0.0	0.029	14.4	0.0	1.4	1	0	0	1	1	1	0	MraZ	protein,	putative	antitoxin-like
Pribosyltran	PF00156.27	gi|390939034|ref|YP_006402772.1|	-	3.9e-08	33.0	0.1	7.5e-08	32.1	0.1	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.22	gi|390939034|ref|YP_006402772.1|	-	0.017	15.2	0.0	0.051	13.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix
ERCC3_RAD25_C	PF16203.5	gi|390939036|ref|YP_006402774.1|	-	4e-26	91.7	0.0	1e-25	90.4	0.0	1.5	1	1	1	2	2	2	1	ERCC3/RAD25/XPB	C-terminal	helicase
ResIII	PF04851.15	gi|390939036|ref|YP_006402774.1|	-	6.9e-22	78.3	0.1	2e-21	76.7	0.0	1.8	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|390939036|ref|YP_006402774.1|	-	3.6e-19	69.2	0.0	1.2e-18	67.5	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|390939036|ref|YP_006402774.1|	-	4.5e-06	26.6	0.0	2.2e-05	24.3	0.0	2.2	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
SNF2_N	PF00176.23	gi|390939036|ref|YP_006402774.1|	-	0.00038	19.3	0.3	0.19	10.4	0.0	2.4	1	1	1	2	2	2	2	SNF2	family	N-terminal	domain
AAA_12	PF13087.6	gi|390939036|ref|YP_006402774.1|	-	0.014	15.1	0.1	0.028	14.0	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
PriCT_1	PF08708.11	gi|390939036|ref|YP_006402774.1|	-	0.042	13.6	0.0	7	6.5	0.1	2.8	2	0	0	2	2	2	0	Primase	C	terminal	1	(PriCT-1)
AAA_22	PF13401.6	gi|390939036|ref|YP_006402774.1|	-	0.078	13.2	2.6	5.1	7.4	0.3	3.8	3	1	0	3	3	3	0	AAA	domain
Alba	PF01918.21	gi|390939038|ref|YP_006402776.1|	-	2.2e-21	75.4	1.2	3e-21	75.0	1.2	1.2	1	0	0	1	1	1	1	Alba
Topoisom_bac	PF01131.20	gi|390939039|ref|YP_006402777.1|	-	3.8e-65	220.5	0.0	7.5e-65	219.5	0.0	1.5	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|390939039|ref|YP_006402777.1|	-	3.5e-21	75.4	0.0	9.9e-21	73.9	0.0	1.9	1	0	0	1	1	1	1	Toprim	domain
DEAD	PF00270.29	gi|390939039|ref|YP_006402777.1|	-	2.9e-14	53.2	0.1	7.2e-14	51.9	0.1	1.7	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|390939039|ref|YP_006402777.1|	-	3.6e-08	33.7	0.1	6.2e-06	26.5	0.0	3.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|390939039|ref|YP_006402777.1|	-	2.3e-06	27.7	0.0	7.5e-06	26.1	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
IstB_IS21	PF01695.17	gi|390939039|ref|YP_006402777.1|	-	0.00046	20.0	0.1	0.0017	18.1	0.0	1.9	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_22	PF13401.6	gi|390939039|ref|YP_006402777.1|	-	0.00054	20.2	0.1	0.0026	18.1	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
Toprim_4	PF13662.6	gi|390939039|ref|YP_006402777.1|	-	0.00087	19.7	0.0	0.0026	18.2	0.0	1.9	1	0	0	1	1	1	1	Toprim	domain
AAA_30	PF13604.6	gi|390939039|ref|YP_006402777.1|	-	0.0046	16.7	0.0	0.01	15.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|390939039|ref|YP_006402777.1|	-	0.0057	17.1	0.0	0.017	15.5	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_19	PF13245.6	gi|390939039|ref|YP_006402777.1|	-	0.01	16.1	0.0	0.024	15.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|390939039|ref|YP_006402777.1|	-	0.014	15.0	0.0	0.027	14.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Bac_DnaA	PF00308.18	gi|390939039|ref|YP_006402777.1|	-	0.015	15.2	0.0	0.047	13.5	0.0	1.8	1	0	0	1	1	1	0	Bacterial	dnaA	protein
Zn-ribbon_8	PF09723.10	gi|390939039|ref|YP_006402777.1|	-	0.017	15.2	5.2	0.043	13.9	2.4	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|390939039|ref|YP_006402777.1|	-	0.025	14.6	4.0	1.1	9.4	0.7	2.3	2	0	0	2	2	2	0	Double	zinc	ribbon
DNA_ligase_ZBD	PF03119.16	gi|390939039|ref|YP_006402777.1|	-	0.041	13.9	3.2	3.9	7.6	0.0	2.8	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
AAA_10	PF12846.7	gi|390939039|ref|YP_006402777.1|	-	0.061	12.2	0.0	0.098	11.6	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
HypA	PF01155.19	gi|390939039|ref|YP_006402777.1|	-	0.064	13.3	0.7	0.87	9.6	0.1	2.6	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
NOB1_Zn_bind	PF08772.11	gi|390939039|ref|YP_006402777.1|	-	0.092	12.9	6.0	7.8	6.7	0.4	3.5	2	1	1	3	3	3	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zinc-ribbons_6	PF07191.12	gi|390939039|ref|YP_006402777.1|	-	0.1	12.6	1.7	0.64	10.0	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbons
DUF5608	PF18356.1	gi|390939039|ref|YP_006402777.1|	-	0.1	12.6	1.5	0.35	10.9	0.1	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5608)
HycI	PF01750.18	gi|390939039|ref|YP_006402777.1|	-	0.12	12.1	0.0	0.39	10.5	0.0	1.8	1	0	0	1	1	1	0	Hydrogenase	maturation	protease
zf_Rg	PF17915.1	gi|390939039|ref|YP_006402777.1|	-	0.68	9.4	4.6	0.28	10.6	1.3	2.0	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
Auto_anti-p27	PF06677.12	gi|390939039|ref|YP_006402777.1|	-	1	9.5	2.8	1.9	8.7	0.1	2.3	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Alba	PF01918.21	gi|390939040|ref|YP_006402778.1|	-	1.8e-08	34.1	0.0	2.6e-08	33.6	0.0	1.3	1	0	0	1	1	1	1	Alba
Ribo_biogen_C	PF04034.13	gi|390939041|ref|YP_006402779.1|	-	1.4e-37	128.2	0.0	1.9e-37	127.8	0.0	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
RLI	PF04068.15	gi|390939041|ref|YP_006402779.1|	-	0.034	14.0	0.0	0.057	13.3	0.0	1.3	1	0	0	1	1	1	0	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
Glyco_hydro_98M	PF08306.11	gi|390939041|ref|YP_006402779.1|	-	0.073	12.4	0.0	1.1	8.5	0.0	2.0	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	98
AsnC_trans_reg	PF01037.21	gi|390939042|ref|YP_006402780.1|	-	2.3e-14	53.1	0.9	3.4e-14	52.6	0.9	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
SnoaL	PF07366.12	gi|390939042|ref|YP_006402780.1|	-	0.089	12.6	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	SnoaL-like	polyketide	cyclase
OrfB_IS605	PF01385.19	gi|390939043|ref|YP_006402781.1|	-	1.9e-25	89.4	0.0	3.3e-25	88.6	0.0	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|390939043|ref|YP_006402781.1|	-	2.7e-15	56.0	0.0	4.6e-15	55.3	0.0	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
RuvX	PF03652.15	gi|390939043|ref|YP_006402781.1|	-	0.085	13.2	0.0	0.25	11.7	0.0	1.8	1	1	0	1	1	1	0	Holliday	junction	resolvase
zf_Rg	PF17915.1	gi|390939043|ref|YP_006402781.1|	-	0.17	11.3	0.1	0.32	10.4	0.1	1.4	1	0	0	1	1	1	0	Reverse	gyrase	zinc	finger
tRNA-synt_1b	PF00579.25	gi|390939044|ref|YP_006402782.1|	-	1.7e-48	165.5	0.0	2.3e-47	161.8	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
DUF2309	PF10070.9	gi|390939044|ref|YP_006402782.1|	-	0.038	12.3	0.0	0.056	11.8	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
Lactamase_B_2	PF12706.7	gi|390939045|ref|YP_006402783.1|	-	1.2e-23	83.7	0.1	1.8e-23	83.1	0.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|390939045|ref|YP_006402783.1|	-	1e-21	77.5	0.0	1.4e-21	77.1	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|390939045|ref|YP_006402783.1|	-	1.3e-11	44.9	2.4	2.7e-11	43.8	2.4	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Peptidase_M24	PF00557.24	gi|390939046|ref|YP_006402784.1|	-	1.3e-38	132.8	0.0	1.6e-38	132.6	0.0	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
DUF1512	PF07431.12	gi|390939047|ref|YP_006402785.1|	-	1.8e-149	497.6	6.4	2e-149	497.4	6.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1512)
HTH_psq	PF05225.16	gi|390939047|ref|YP_006402785.1|	-	0.15	11.8	0.0	0.33	10.7	0.0	1.6	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
Ost4	PF10215.9	gi|390939048|ref|YP_006402786.1|	-	0.013	15.3	0.1	0.018	14.8	0.1	1.2	1	0	0	1	1	1	0	Oligosaccaryltransferase
HypA	PF01155.19	gi|390939048|ref|YP_006402786.1|	-	0.03	14.3	0.1	0.042	13.9	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF4519	PF15012.6	gi|390939048|ref|YP_006402786.1|	-	0.041	14.1	0.6	0.064	13.4	0.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4519)
Mu-like_Com	PF10122.9	gi|390939048|ref|YP_006402786.1|	-	0.053	13.0	0.2	0.085	12.3	0.2	1.4	1	0	0	1	1	1	0	Mu-like	prophage	protein	Com
Zn_Tnp_IS1595	PF12760.7	gi|390939048|ref|YP_006402786.1|	-	0.075	13.0	0.5	4.4	7.3	0.0	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|390939048|ref|YP_006402786.1|	-	0.08	12.5	1.6	8.8	5.9	0.3	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|390939048|ref|YP_006402786.1|	-	0.2	11.8	1.9	0.47	10.6	1.9	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|390939048|ref|YP_006402786.1|	-	0.42	10.5	3.8	1.2	9.1	0.3	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-ACC	PF17848.1	gi|390939048|ref|YP_006402786.1|	-	4.7	7.4	7.9	1.3	9.2	0.6	2.5	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
DUF1805	PF08827.11	gi|390939049|ref|YP_006402787.1|	-	2.4e-19	69.4	0.6	3.5e-19	68.9	0.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1805)
PK	PF00224.21	gi|390939050|ref|YP_006402788.1|	-	3e-82	276.3	0.1	4e-82	275.9	0.1	1.1	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.16	gi|390939050|ref|YP_006402788.1|	-	5.5e-08	33.1	2.8	8.6e-08	32.4	0.0	2.8	4	0	0	4	4	4	1	Pyruvate	kinase,	alpha/beta	domain
TIM	PF00121.18	gi|390939051|ref|YP_006402789.1|	-	4.3e-15	55.8	0.0	2.7e-14	53.1	0.0	1.9	2	0	0	2	2	2	1	Triosephosphate	isomerase
ThiG	PF05690.14	gi|390939051|ref|YP_006402789.1|	-	6.7e-07	28.9	1.4	1e-06	28.2	1.4	1.3	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.21	gi|390939051|ref|YP_006402789.1|	-	0.0057	15.9	0.0	0.0083	15.3	0.0	1.2	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
DHO_dh	PF01180.21	gi|390939051|ref|YP_006402789.1|	-	0.0062	15.8	1.2	0.0093	15.2	1.1	1.3	1	1	0	1	1	1	1	Dihydroorotate	dehydrogenase
FMN_dh	PF01070.18	gi|390939051|ref|YP_006402789.1|	-	0.062	12.3	0.4	0.11	11.5	0.4	1.3	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
SH3_17	PF18350.1	gi|390939051|ref|YP_006402789.1|	-	0.17	11.8	2.0	0.31	11.0	0.4	2.1	2	0	0	2	2	2	0	Restriction	endonuclease	SH3	domain
FBPase_3	PF01950.16	gi|390939052|ref|YP_006402790.1|	-	1.5e-184	613.2	0.0	1.7e-184	613.0	0.0	1.0	1	0	0	1	1	1	1	Fructose-1,6-bisphosphatase
ABC_tran	PF00005.27	gi|390939053|ref|YP_006402791.1|	-	7.1e-39	133.5	0.0	8.9e-20	71.6	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|390939053|ref|YP_006402791.1|	-	1.7e-14	54.3	8.0	0.0077	16.1	0.7	4.2	2	2	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|390939053|ref|YP_006402791.1|	-	4.1e-12	46.0	2.8	0.00011	21.7	0.2	3.6	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
RLI	PF04068.15	gi|390939053|ref|YP_006402791.1|	-	1.9e-10	40.3	4.2	5.3e-10	39.0	4.2	1.8	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
Fer4	PF00037.27	gi|390939053|ref|YP_006402791.1|	-	2.8e-08	33.2	10.1	3.9e-08	32.8	4.9	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA_22	PF13401.6	gi|390939053|ref|YP_006402791.1|	-	9.9e-07	29.1	0.0	0.029	14.7	0.0	3.0	3	0	0	3	3	3	2	AAA	domain
Fer4_6	PF12837.7	gi|390939053|ref|YP_006402791.1|	-	9e-06	25.6	12.2	0.00028	20.8	3.3	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|390939053|ref|YP_006402791.1|	-	1.1e-05	25.9	16.3	0.0007	20.1	6.7	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
AAA_16	PF13191.6	gi|390939053|ref|YP_006402791.1|	-	1.8e-05	25.2	0.0	0.23	11.8	0.0	3.1	3	1	1	4	4	3	2	AAA	ATPase	domain
Fer4_10	PF13237.6	gi|390939053|ref|YP_006402791.1|	-	4.3e-05	23.5	9.7	0.00046	20.2	1.3	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
RsgA_GTPase	PF03193.16	gi|390939053|ref|YP_006402791.1|	-	4.7e-05	23.4	0.0	0.21	11.5	0.0	3.2	3	0	0	3	3	3	1	RsgA	GTPase
Rad17	PF03215.15	gi|390939053|ref|YP_006402791.1|	-	4.8e-05	23.4	0.0	0.064	13.2	0.0	2.3	2	0	0	2	2	2	2	Rad17	P-loop	domain
Fer4_21	PF14697.6	gi|390939053|ref|YP_006402791.1|	-	5.7e-05	23.2	7.0	0.00011	22.2	7.0	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA_15	PF13175.6	gi|390939053|ref|YP_006402791.1|	-	7.6e-05	22.6	0.1	0.14	11.8	0.0	3.1	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_18	PF13238.6	gi|390939053|ref|YP_006402791.1|	-	0.00016	22.2	0.1	1.3	9.6	0.0	3.2	2	1	0	3	3	3	2	AAA	domain
AAA_23	PF13476.6	gi|390939053|ref|YP_006402791.1|	-	0.00019	22.0	1.3	0.14	12.6	0.1	2.6	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|390939053|ref|YP_006402791.1|	-	0.00027	21.4	0.0	0.43	11.0	0.0	3.0	3	0	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Fer4_2	PF12797.7	gi|390939053|ref|YP_006402791.1|	-	0.00033	20.6	1.1	0.00033	20.6	1.1	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|390939053|ref|YP_006402791.1|	-	0.00034	20.7	7.3	0.00065	19.8	7.3	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA_24	PF13479.6	gi|390939053|ref|YP_006402791.1|	-	0.00035	20.4	0.2	0.022	14.5	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|390939053|ref|YP_006402791.1|	-	0.00044	19.9	0.5	0.84	9.4	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.6	gi|390939053|ref|YP_006402791.1|	-	0.00054	20.0	0.5	0.053	13.6	0.0	3.6	3	1	0	3	3	3	1	AAA	domain
SbcCD_C	PF13558.6	gi|390939053|ref|YP_006402791.1|	-	0.0017	18.6	0.1	1.3	9.3	0.0	3.1	2	2	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_30	PF13604.6	gi|390939053|ref|YP_006402791.1|	-	0.0018	18.0	0.6	0.32	10.7	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
MMR_HSR1	PF01926.23	gi|390939053|ref|YP_006402791.1|	-	0.0048	17.0	2.5	3	8.0	0.4	2.8	3	0	0	3	3	2	2	50S	ribosome-binding	GTPase
RNA_helicase	PF00910.22	gi|390939053|ref|YP_006402791.1|	-	0.005	17.2	0.0	2.4	8.6	0.0	2.6	2	0	0	2	2	2	1	RNA	helicase
SRP54	PF00448.22	gi|390939053|ref|YP_006402791.1|	-	0.0062	16.2	0.4	0.82	9.3	0.0	2.4	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_33	PF13671.6	gi|390939053|ref|YP_006402791.1|	-	0.0082	16.3	0.0	0.71	10.0	0.0	3.0	3	0	0	3	3	2	1	AAA	domain
Fer4_16	PF13484.6	gi|390939053|ref|YP_006402791.1|	-	0.012	16.5	8.4	0.032	15.2	2.8	2.5	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
DUF359	PF04019.12	gi|390939053|ref|YP_006402791.1|	-	0.012	15.3	0.6	0.092	12.4	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF359)
ATP_bind_1	PF03029.17	gi|390939053|ref|YP_006402791.1|	-	0.022	14.6	0.6	4.2	7.1	0.0	3.6	4	0	0	4	4	4	0	Conserved	hypothetical	ATP	binding	protein
KAP_NTPase	PF07693.14	gi|390939053|ref|YP_006402791.1|	-	0.034	13.4	0.0	0.51	9.5	0.0	2.1	2	0	0	2	2	2	0	KAP	family	P-loop	domain
Thymidylate_kin	PF02223.17	gi|390939053|ref|YP_006402791.1|	-	0.036	13.7	0.0	9.5	5.9	0.0	3.0	3	0	0	3	3	3	0	Thymidylate	kinase
AAA_13	PF13166.6	gi|390939053|ref|YP_006402791.1|	-	0.04	12.6	0.0	0.75	8.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|390939053|ref|YP_006402791.1|	-	0.06	13.6	0.4	16	5.7	0.2	3.1	2	2	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|390939053|ref|YP_006402791.1|	-	0.11	11.7	0.8	2.1	7.5	0.0	2.5	2	1	0	2	2	2	0	NB-ARC	domain
MeaB	PF03308.16	gi|390939053|ref|YP_006402791.1|	-	0.13	11.3	0.5	12	4.7	0.1	2.3	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
NACHT	PF05729.12	gi|390939053|ref|YP_006402791.1|	-	0.14	12.1	0.9	1.4	8.9	0.0	2.5	2	0	0	2	2	2	0	NACHT	domain
Fer4_17	PF13534.6	gi|390939053|ref|YP_006402791.1|	-	0.19	12.3	6.9	0.17	12.4	2.0	2.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
NTPase_1	PF03266.15	gi|390939053|ref|YP_006402791.1|	-	0.23	11.4	0.9	3.1	7.7	0.1	2.5	2	0	0	2	2	2	0	NTPase
DUF87	PF01935.17	gi|390939053|ref|YP_006402791.1|	-	0.5	10.4	4.0	28	4.7	1.4	3.0	2	1	0	2	2	2	0	Helicase	HerA,	central	domain
Fer4_4	PF12800.7	gi|390939053|ref|YP_006402791.1|	-	0.95	10.1	13.9	0.091	13.3	3.7	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|390939053|ref|YP_006402791.1|	-	0.98	10.5	14.8	0.17	12.9	4.2	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|390939053|ref|YP_006402791.1|	-	2.3	8.7	7.7	0.19	12.2	1.6	2.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|390939053|ref|YP_006402791.1|	-	6	7.5	7.3	0.33	11.5	1.4	2.1	2	0	0	2	2	1	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
zf-NADH-PPase	PF09297.11	gi|390939054|ref|YP_006402792.1|	-	1.5e-05	24.5	0.6	4.4e-05	23.0	0.6	1.8	1	1	0	1	1	1	1	NADH	pyrophosphatase	zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|390939054|ref|YP_006402792.1|	-	0.00011	22.0	0.9	0.0002	21.2	0.9	1.4	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.7	gi|390939054|ref|YP_006402792.1|	-	0.00043	20.3	0.6	0.00075	19.5	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|390939054|ref|YP_006402792.1|	-	0.00043	19.9	3.5	0.24	11.2	0.1	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-TFIIB	PF13453.6	gi|390939054|ref|YP_006402792.1|	-	0.00044	19.5	2.2	0.00083	18.6	2.2	1.5	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
DUF2387	PF09526.10	gi|390939054|ref|YP_006402792.1|	-	0.0012	19.0	0.8	0.0018	18.4	0.8	1.3	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.7	gi|390939054|ref|YP_006402792.1|	-	0.0066	16.4	0.4	0.011	15.7	0.4	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|390939054|ref|YP_006402792.1|	-	0.0079	16.1	1.0	0.018	14.9	1.0	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
eIF-5_eIF-2B	PF01873.17	gi|390939054|ref|YP_006402792.1|	-	0.013	15.3	2.0	0.018	14.9	0.7	1.8	2	0	0	2	2	2	0	Domain	found	in	IF2B/IF5
zf-ribbon_3	PF13248.6	gi|390939054|ref|YP_006402792.1|	-	0.014	14.8	1.9	1	8.9	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|390939054|ref|YP_006402792.1|	-	0.017	15.5	1.4	0.027	14.8	1.4	1.5	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DNA_ligase_ZBD	PF03119.16	gi|390939054|ref|YP_006402792.1|	-	0.022	14.8	0.3	0.022	14.8	0.3	2.4	3	0	0	3	3	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Nudix_N_2	PF14803.6	gi|390939054|ref|YP_006402792.1|	-	0.024	14.5	1.4	0.25	11.3	1.5	2.3	1	1	1	2	2	2	0	Nudix	N-terminal
IBR	PF01485.21	gi|390939054|ref|YP_006402792.1|	-	0.042	14.1	0.5	0.082	13.1	0.5	1.5	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
Auto_anti-p27	PF06677.12	gi|390939054|ref|YP_006402792.1|	-	0.045	13.9	4.2	0.091	12.9	4.2	1.6	1	1	1	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc-ribbons_6	PF07191.12	gi|390939054|ref|YP_006402792.1|	-	0.048	13.6	1.1	0.13	12.2	0.9	1.8	1	1	1	2	2	2	0	zinc-ribbons
zf-C4_Topoisom	PF01396.19	gi|390939054|ref|YP_006402792.1|	-	0.063	13.1	2.8	0.9	9.4	0.3	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
CDC24_OB3	PF17244.2	gi|390939054|ref|YP_006402792.1|	-	0.064	13.0	0.0	0.069	12.9	0.0	1.1	1	0	0	1	1	1	0	Cell	division	control	protein	24,	OB	domain	3
C1_1	PF00130.22	gi|390939054|ref|YP_006402792.1|	-	0.082	12.8	0.2	0.11	12.4	0.2	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Zn_ribbon_recom	PF13408.6	gi|390939054|ref|YP_006402792.1|	-	0.13	12.8	4.8	8.4	7.0	4.8	2.2	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
zf_UBZ	PF18439.1	gi|390939054|ref|YP_006402792.1|	-	0.14	11.8	0.9	4.8	6.9	0.1	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-IS66	PF13005.7	gi|390939054|ref|YP_006402792.1|	-	0.19	12.1	3.3	7.9	7.0	3.2	2.6	1	1	0	1	1	1	0	zinc-finger	binding	domain	of	transposase	IS66
PriA_CRR	PF18319.1	gi|390939054|ref|YP_006402792.1|	-	0.2	11.7	1.6	7.9	6.6	0.0	2.2	2	0	0	2	2	2	0	PriA	DNA	helicase	Cys-rich	region	(CRR)	domain
Ribosomal_L37e	PF01907.19	gi|390939054|ref|YP_006402792.1|	-	0.25	11.6	2.8	0.55	10.4	2.8	1.6	1	1	0	1	1	1	0	Ribosomal	protein	L37e
UPF0547	PF10571.9	gi|390939054|ref|YP_006402792.1|	-	0.37	10.9	2.4	18	5.5	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.10	gi|390939054|ref|YP_006402792.1|	-	0.5	10.5	4.8	5.6	7.2	0.5	2.3	1	1	0	2	2	2	0	Zinc	ribbon	domain
zf-ISL3	PF14690.6	gi|390939054|ref|YP_006402792.1|	-	0.84	10.4	5.4	1.3	9.8	0.2	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_4	PF13717.6	gi|390939054|ref|YP_006402792.1|	-	0.93	9.5	3.9	13	5.8	0.2	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
HypA	PF01155.19	gi|390939054|ref|YP_006402792.1|	-	1.3	9.1	4.2	4.2	7.4	0.7	2.6	1	1	2	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|390939054|ref|YP_006402792.1|	-	1.9	8.3	5.0	3.6	7.4	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zn-ribbon_14	PF16503.5	gi|390939054|ref|YP_006402792.1|	-	7.8	6.1	8.6	7	6.3	1.0	3.0	3	0	0	3	3	3	0	Zinc-ribbon
Ribosomal_S17e	PF00833.18	gi|390939055|ref|YP_006402793.1|	-	5.7e-19	68.2	0.3	6.3e-19	68.1	0.3	1.0	1	0	0	1	1	1	1	Ribosomal	S17
DUF4231	PF14015.6	gi|390939057|ref|YP_006402795.1|	-	0.057	13.9	4.5	2.5	8.6	0.0	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4231)
DUF4423	PF14394.6	gi|390939058|ref|YP_006402796.1|	-	0.025	14.3	0.0	0.085	12.6	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
AdoHcyase	PF05221.17	gi|390939059|ref|YP_006402797.1|	-	6.6e-70	235.6	0.0	2.8e-40	138.3	0.0	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|390939059|ref|YP_006402797.1|	-	1e-53	181.7	0.0	1.7e-53	181.0	0.0	1.3	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|390939059|ref|YP_006402797.1|	-	1.4e-08	34.3	0.1	2.7e-08	33.4	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|390939059|ref|YP_006402797.1|	-	1.4e-06	27.9	0.0	2.7e-06	27.0	0.0	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
TrkA_N	PF02254.18	gi|390939059|ref|YP_006402797.1|	-	0.066	13.5	0.2	0.49	10.7	0.1	2.4	2	0	0	2	2	2	0	TrkA-N	domain
zf-RNPHF	PF08080.12	gi|390939059|ref|YP_006402797.1|	-	0.093	12.7	0.2	0.18	11.8	0.2	1.4	1	0	0	1	1	1	0	RNPHF	zinc	finger
TGT_C2	PF14810.6	gi|390939060|ref|YP_006402798.1|	-	4.8e-16	58.6	0.0	9.7e-16	57.7	0.0	1.5	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.20	gi|390939060|ref|YP_006402798.1|	-	1.9e-14	53.4	0.1	3.3e-14	52.6	0.1	1.4	1	0	0	1	1	1	1	PUA	domain
UPF0113	PF03657.13	gi|390939060|ref|YP_006402798.1|	-	0.00027	21.2	0.0	0.00042	20.5	0.0	1.4	1	0	0	1	1	1	1	UPF0113	PUA	domain
PAC2	PF09754.9	gi|390939061|ref|YP_006402799.1|	-	4.1e-33	115.2	0.0	5.2e-33	114.9	0.0	1.1	1	0	0	1	1	1	1	PAC2	family
APG6_N	PF17675.1	gi|390939061|ref|YP_006402799.1|	-	1.6	9.3	6.6	22	5.6	6.6	2.1	1	1	0	1	1	1	0	Apg6	coiled-coil	region
TGT	PF01702.18	gi|390939062|ref|YP_006402800.1|	-	1.9e-64	218.1	0.0	2.4e-64	217.7	0.0	1.1	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
DUF5591	PF17884.1	gi|390939062|ref|YP_006402800.1|	-	1.2e-07	31.7	0.0	2.8e-07	30.5	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5591)
TGT_C1	PF14809.6	gi|390939062|ref|YP_006402800.1|	-	0.027	14.8	0.2	0.079	13.3	0.2	1.7	1	0	0	1	1	1	0	C1	domain	of	tRNA-guanine	transglycosylase	dimerisation
Lsm_C	PF14894.6	gi|390939063|ref|YP_006402801.1|	-	4.6e-28	96.8	0.8	3e-27	94.2	0.5	2.1	2	0	0	2	2	2	1	Lsm	C-terminal
LSM	PF01423.22	gi|390939063|ref|YP_006402801.1|	-	1.1e-07	31.4	0.1	1.8e-07	30.7	0.1	1.4	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|390939063|ref|YP_006402801.1|	-	0.00028	20.9	0.0	0.0005	20.2	0.0	1.4	1	0	0	1	1	1	1	Ataxin	2	SM	domain
Gemin6	PF06372.12	gi|390939063|ref|YP_006402801.1|	-	0.00071	19.2	0.0	0.001	18.6	0.0	1.3	1	0	0	1	1	1	1	Gemin6	protein
LSM14	PF12701.7	gi|390939063|ref|YP_006402801.1|	-	0.11	12.6	0.1	0.26	11.4	0.1	1.6	1	1	0	1	1	1	0	Scd6-like	Sm	domain
RNA_pol_RpbG	PF16992.5	gi|390939064|ref|YP_006402802.1|	-	7.6e-18	64.7	0.2	8.7e-18	64.5	0.2	1.0	1	0	0	1	1	1	1	DNA-directed	RNA	polymerase,	subunit	G
Cpn60_TCP1	PF00118.24	gi|390939065|ref|YP_006402803.1|	-	2.5e-178	593.7	13.4	2.8e-178	593.5	13.4	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Pyr_redox_2	PF07992.14	gi|390939066|ref|YP_006402804.1|	-	1.9e-46	158.7	0.3	2.2e-46	158.5	0.3	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|390939066|ref|YP_006402804.1|	-	3.3e-23	82.4	1.1	1.6e-18	67.0	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|390939066|ref|YP_006402804.1|	-	2e-14	53.9	3.0	8.1e-11	42.3	0.2	3.0	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|390939066|ref|YP_006402804.1|	-	4.5e-12	45.8	3.5	1.4e-06	27.7	1.6	3.7	3	1	1	4	4	4	3	FAD	binding	domain
GIDA	PF01134.22	gi|390939066|ref|YP_006402804.1|	-	8.9e-10	38.2	8.7	5.8e-06	25.6	0.6	3.7	4	1	0	4	4	4	2	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|390939066|ref|YP_006402804.1|	-	1e-09	38.3	1.4	5.1e-07	29.4	0.0	3.1	2	1	1	3	3	3	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|390939066|ref|YP_006402804.1|	-	6.1e-09	35.1	0.7	0.00054	18.8	0.2	3.2	3	0	0	3	3	3	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|390939066|ref|YP_006402804.1|	-	5.9e-07	29.0	2.2	3.7e-05	23.1	0.5	2.5	3	0	0	3	3	3	1	FAD	binding	domain
Thi4	PF01946.17	gi|390939066|ref|YP_006402804.1|	-	1.4e-06	27.8	3.9	6.7e-05	22.2	0.2	2.7	2	1	1	3	3	3	2	Thi4	family
NAD_binding_8	PF13450.6	gi|390939066|ref|YP_006402804.1|	-	5.5e-05	23.3	0.8	0.0098	16.1	0.2	2.7	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|390939066|ref|YP_006402804.1|	-	7.5e-05	22.5	6.0	0.011	15.4	2.5	2.8	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.6	gi|390939066|ref|YP_006402804.1|	-	0.00091	19.6	0.2	0.48	10.9	0.0	2.4	2	0	0	2	2	2	2	Putative	NAD(P)-binding
Trp_halogenase	PF04820.14	gi|390939066|ref|YP_006402804.1|	-	0.0013	17.6	2.9	0.46	9.3	0.8	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
Lycopene_cycl	PF05834.12	gi|390939066|ref|YP_006402804.1|	-	0.0026	16.9	0.9	0.029	13.4	0.2	2.2	2	0	0	2	2	2	1	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|390939066|ref|YP_006402804.1|	-	0.0051	16.1	0.1	0.21	10.9	0.0	2.2	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
PALP	PF00291.25	gi|390939066|ref|YP_006402804.1|	-	0.022	14.2	0.2	0.5	9.7	0.1	2.2	2	0	0	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
K_oxygenase	PF13434.6	gi|390939066|ref|YP_006402804.1|	-	0.078	12.1	0.2	39	3.2	0.0	3.0	2	1	1	3	3	3	0	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_9	PF13454.6	gi|390939066|ref|YP_006402804.1|	-	0.098	12.6	0.9	8.2	6.4	0.0	2.9	3	0	0	3	3	3	0	FAD-NAD(P)-binding
SelR	PF01641.18	gi|390939066|ref|YP_006402804.1|	-	0.13	12.3	0.0	0.56	10.3	0.0	1.9	2	0	0	2	2	2	0	SelR	domain
Aldo_ket_red	PF00248.21	gi|390939067|ref|YP_006402805.1|	-	2.5e-72	243.6	0.0	2.8e-72	243.4	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
HU-CCDC81_bac_2	PF18175.1	gi|390939067|ref|YP_006402805.1|	-	0.18	11.7	0.1	1.2	9.0	0.0	2.2	2	0	0	2	2	2	0	CCDC81-like	prokaryotic	HU	domain	2
PP-binding	PF00550.25	gi|390939067|ref|YP_006402805.1|	-	0.19	12.1	0.0	0.56	10.6	0.0	1.8	1	0	0	1	1	1	0	Phosphopantetheine	attachment	site
DUF2122	PF09895.9	gi|390939068|ref|YP_006402806.1|	-	1.5e-29	102.5	0.1	1.9e-29	102.2	0.1	1.1	1	0	0	1	1	1	1	RecB-family	nuclease	(DUF2122)
INCENP_N	PF12178.8	gi|390939068|ref|YP_006402806.1|	-	0.17	11.9	0.1	2.4	8.2	0.0	2.2	2	0	0	2	2	2	0	Chromosome	passenger	complex	(CPC)	protein	INCENP	N	terminal
DNA_methylase	PF00145.17	gi|390939069|ref|YP_006402807.1|	-	1.6e-45	155.9	0.0	1.9e-31	109.6	0.0	2.1	1	1	1	2	2	2	2	C-5	cytosine-specific	DNA	methylase
Methyltransf_15	PF09445.10	gi|390939069|ref|YP_006402807.1|	-	0.0099	15.5	0.0	0.017	14.7	0.0	1.4	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
TFIIE_alpha	PF02002.17	gi|390939070|ref|YP_006402808.1|	-	4.9e-10	39.2	0.8	3.4e-09	36.5	0.1	2.1	2	0	0	2	2	2	1	TFIIE	alpha	subunit
TF_Zn_Ribbon	PF08271.12	gi|390939070|ref|YP_006402808.1|	-	0.0055	16.2	0.9	0.011	15.2	0.9	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
HypA	PF01155.19	gi|390939070|ref|YP_006402808.1|	-	0.012	15.6	0.0	0.017	15.1	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF3654	PF12376.8	gi|390939070|ref|YP_006402808.1|	-	0.032	14.4	0.5	0.048	13.8	0.5	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3654)
SieB	PF14163.6	gi|390939070|ref|YP_006402808.1|	-	0.045	13.2	0.2	0.088	12.3	0.1	1.6	2	0	0	2	2	2	0	Super-infection	exclusion	protein	B
Lar_restr_allev	PF14354.6	gi|390939070|ref|YP_006402808.1|	-	0.052	13.9	0.1	0.085	13.2	0.1	1.4	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_4	PF13717.6	gi|390939070|ref|YP_006402808.1|	-	0.097	12.6	0.2	0.21	11.5	0.2	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
AAA	PF00004.29	gi|390939072|ref|YP_006402810.1|	-	1.2e-43	148.7	0.5	1.5e-42	145.2	0.0	2.4	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|390939072|ref|YP_006402810.1|	-	3.9e-16	58.6	0.0	9.2e-16	57.4	0.0	1.6	1	0	0	1	1	1	1	AAA+	lid	domain
Prot_ATP_ID_OB	PF16450.5	gi|390939072|ref|YP_006402810.1|	-	1e-10	41.4	0.2	2.9e-10	39.9	0.2	1.8	1	0	0	1	1	1	1	Proteasomal	ATPase	OB	C-terminal	domain
AAA_2	PF07724.14	gi|390939072|ref|YP_006402810.1|	-	6.8e-07	29.6	0.8	2.4e-06	27.8	0.0	2.2	3	0	0	3	3	2	1	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|390939072|ref|YP_006402810.1|	-	2.9e-06	27.8	0.2	0.00053	20.4	0.0	2.5	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|390939072|ref|YP_006402810.1|	-	6.7e-06	26.1	0.1	2.4e-05	24.4	0.1	1.9	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|390939072|ref|YP_006402810.1|	-	6.8e-06	25.9	0.0	2.2e-05	24.2	0.0	1.8	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Prot_ATP_OB_N	PF17758.1	gi|390939072|ref|YP_006402810.1|	-	4.3e-05	23.1	0.2	0.00016	21.2	0.2	2.0	1	0	0	1	1	1	1	Proteasomal	ATPase	OB	N-terminal	domain
DUF815	PF05673.13	gi|390939072|ref|YP_006402810.1|	-	0.00025	20.3	0.1	0.00074	18.8	0.0	1.8	2	1	0	2	2	1	1	Protein	of	unknown	function	(DUF815)
AAA_22	PF13401.6	gi|390939072|ref|YP_006402810.1|	-	0.00062	20.0	0.1	0.0097	16.2	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|390939072|ref|YP_006402810.1|	-	0.0011	19.5	0.1	0.015	15.9	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|390939072|ref|YP_006402810.1|	-	0.0012	18.3	0.0	0.0026	17.2	0.0	1.5	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
ATPase_2	PF01637.18	gi|390939072|ref|YP_006402810.1|	-	0.0017	18.3	0.6	0.023	14.6	0.0	2.7	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
Zeta_toxin	PF06414.12	gi|390939072|ref|YP_006402810.1|	-	0.0023	17.2	0.3	0.024	13.9	0.0	2.3	2	0	0	2	2	2	1	Zeta	toxin
TIP49	PF06068.13	gi|390939072|ref|YP_006402810.1|	-	0.0034	16.6	0.0	0.0062	15.8	0.0	1.3	1	0	0	1	1	1	1	TIP49	P-loop	domain
AAA_28	PF13521.6	gi|390939072|ref|YP_006402810.1|	-	0.0041	17.4	0.2	0.012	15.9	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.6	gi|390939072|ref|YP_006402810.1|	-	0.0045	16.7	0.1	0.037	13.7	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|390939072|ref|YP_006402810.1|	-	0.0047	17.0	0.0	0.011	15.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|390939072|ref|YP_006402810.1|	-	0.0064	16.2	0.0	0.021	14.6	0.0	1.8	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|390939072|ref|YP_006402810.1|	-	0.0069	16.6	0.0	0.028	14.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|390939072|ref|YP_006402810.1|	-	0.0075	16.7	0.1	0.028	14.8	0.0	2.0	2	0	0	2	2	1	1	RNA	helicase
NACHT	PF05729.12	gi|390939072|ref|YP_006402810.1|	-	0.0089	16.0	0.2	0.037	13.9	0.0	2.0	2	0	0	2	2	2	1	NACHT	domain
AAA_25	PF13481.6	gi|390939072|ref|YP_006402810.1|	-	0.018	14.6	0.1	0.11	12.1	0.0	2.3	3	0	0	3	3	3	0	AAA	domain
AAA_17	PF13207.6	gi|390939072|ref|YP_006402810.1|	-	0.019	15.4	0.3	0.049	14.0	0.0	1.9	2	0	0	2	2	1	0	AAA	domain
ABC_tran	PF00005.27	gi|390939072|ref|YP_006402810.1|	-	0.031	14.8	0.1	0.099	13.2	0.0	1.9	2	0	0	2	2	2	0	ABC	transporter
Vps4_C	PF09336.10	gi|390939072|ref|YP_006402810.1|	-	0.033	14.2	0.1	0.2	11.7	0.1	2.2	2	0	0	2	2	2	0	Vps4	C	terminal	oligomerisation	domain
TFIID-18kDa	PF02269.16	gi|390939072|ref|YP_006402810.1|	-	0.036	14.1	0.1	0.1	12.6	0.1	1.8	1	0	0	1	1	1	0	Transcription	initiation	factor	IID,	18kD	subunit
ATPase	PF06745.13	gi|390939072|ref|YP_006402810.1|	-	0.055	12.8	0.1	0.18	11.1	0.1	1.9	1	1	0	1	1	1	0	KaiC
AAA_7	PF12775.7	gi|390939072|ref|YP_006402810.1|	-	0.058	12.9	0.0	0.12	11.9	0.0	1.5	1	1	0	1	1	1	0	P-loop	containing	dynein	motor	region
Sigma54_activat	PF00158.26	gi|390939072|ref|YP_006402810.1|	-	0.08	12.6	0.1	0.26	11.0	0.0	1.9	2	0	0	2	2	1	0	Sigma-54	interaction	domain
NB-ARC	PF00931.22	gi|390939072|ref|YP_006402810.1|	-	0.11	11.6	0.0	0.26	10.5	0.0	1.5	1	0	0	1	1	1	0	NB-ARC	domain
TsaE	PF02367.17	gi|390939072|ref|YP_006402810.1|	-	0.13	12.3	0.0	0.27	11.2	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
U3_assoc_6	PF08640.11	gi|390939072|ref|YP_006402810.1|	-	0.57	10.3	5.0	1.5	9.0	0.5	2.7	2	0	0	2	2	2	0	U3	small	nucleolar	RNA-associated	protein	6
HTH_3	PF01381.22	gi|390939073|ref|YP_006402811.1|	-	5.7e-11	42.3	1.2	1e-10	41.5	1.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|390939073|ref|YP_006402811.1|	-	2.1e-09	37.6	0.9	3.3e-09	37.0	0.9	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|390939073|ref|YP_006402811.1|	-	4e-09	36.4	0.4	7.9e-09	35.4	0.4	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|390939073|ref|YP_006402811.1|	-	0.00013	21.8	0.4	0.00028	20.7	0.4	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4428	PF14471.6	gi|390939073|ref|YP_006402811.1|	-	0.005	16.7	1.0	0.012	15.6	1.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
HTH_37	PF13744.6	gi|390939073|ref|YP_006402811.1|	-	0.062	13.3	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DZR	PF12773.7	gi|390939073|ref|YP_006402811.1|	-	0.15	12.1	3.1	0.34	11.0	3.1	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
MqsA_antitoxin	PF15731.5	gi|390939073|ref|YP_006402811.1|	-	0.24	11.5	4.3	2	8.6	3.1	2.5	1	1	1	2	2	2	0	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
HypA	PF01155.19	gi|390939073|ref|YP_006402811.1|	-	1.9	8.5	5.6	1.6	8.8	3.4	1.8	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-DNL	PF05180.12	gi|390939073|ref|YP_006402811.1|	-	1.9	8.5	6.8	2	8.4	5.4	1.8	2	0	0	2	2	2	0	DNL	zinc	finger
DUF2703	PF10865.8	gi|390939073|ref|YP_006402811.1|	-	2	8.7	7.1	1.8	8.7	3.7	2.3	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2703)
MMR_HSR1	PF01926.23	gi|390939074|ref|YP_006402812.1|	-	1e-19	70.7	0.0	2e-19	69.8	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP-bdg_M	PF16360.5	gi|390939074|ref|YP_006402812.1|	-	2.8e-14	53.5	4.5	5.3e-14	52.6	4.5	1.5	1	0	0	1	1	1	1	GTP-binding	GTPase	Middle	Region
FeoB_N	PF02421.18	gi|390939074|ref|YP_006402812.1|	-	5.1e-13	48.8	0.0	8.8e-13	48.1	0.0	1.4	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP-bdg_N	PF13167.6	gi|390939074|ref|YP_006402812.1|	-	1.4e-10	41.7	0.1	6.3e-10	39.6	0.1	2.1	2	0	0	2	2	2	1	GTP-binding	GTPase	N-terminal
GTP_EFTU	PF00009.27	gi|390939074|ref|YP_006402812.1|	-	1.8e-06	27.7	0.9	3e-05	23.7	0.1	2.2	1	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.21	gi|390939074|ref|YP_006402812.1|	-	1.5e-05	24.5	0.0	3.5e-05	23.3	0.0	1.6	1	1	0	1	1	1	1	ADP-ribosylation	factor	family
PduV-EutP	PF10662.9	gi|390939074|ref|YP_006402812.1|	-	9.1e-05	22.2	0.4	0.0007	19.4	0.4	2.3	1	1	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1_Xtn	PF16897.5	gi|390939074|ref|YP_006402812.1|	-	0.00017	21.6	0.4	0.00037	20.5	0.4	1.7	1	1	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
cobW	PF02492.19	gi|390939074|ref|YP_006402812.1|	-	0.00069	19.2	2.7	0.072	12.7	0.1	2.7	3	0	0	3	3	3	2	CobW/HypB/UreG,	nucleotide-binding	domain
RsgA_GTPase	PF03193.16	gi|390939074|ref|YP_006402812.1|	-	0.008	16.1	0.0	5.2	6.9	0.1	2.4	2	0	0	2	2	2	2	RsgA	GTPase
ABC_tran	PF00005.27	gi|390939074|ref|YP_006402812.1|	-	0.012	16.2	0.0	0.023	15.2	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
Dynamin_N	PF00350.23	gi|390939074|ref|YP_006402812.1|	-	0.017	15.2	0.1	0.17	11.9	0.0	2.1	2	0	0	2	2	2	0	Dynamin	family
AAA_23	PF13476.6	gi|390939074|ref|YP_006402812.1|	-	0.018	15.6	0.5	0.075	13.5	0.3	1.9	1	1	1	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|390939074|ref|YP_006402812.1|	-	0.073	13.3	0.0	0.15	12.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Trm56	PF01994.16	gi|390939075|ref|YP_006402813.1|	-	1.4e-49	166.9	0.0	1.8e-49	166.6	0.0	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
SPOUT_MTase_2	PF14419.6	gi|390939075|ref|YP_006402813.1|	-	0.096	12.1	0.1	0.17	11.2	0.0	1.6	2	0	0	2	2	2	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
Imm25	PF15564.6	gi|390939076|ref|YP_006402814.1|	-	0.0075	16.2	0.0	0.019	14.9	0.0	1.6	1	0	0	1	1	1	1	Immunity	protein	25
DUF2730	PF10805.8	gi|390939077|ref|YP_006402815.1|	-	7.4e-08	32.4	2.2	0.0034	17.5	0.1	3.1	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF2730)
DUF1664	PF07889.12	gi|390939077|ref|YP_006402815.1|	-	1.2e-07	31.8	14.0	0.00077	19.5	5.0	3.5	1	1	3	4	4	4	4	Protein	of	unknown	function	(DUF1664)
NPV_P10	PF05531.12	gi|390939077|ref|YP_006402815.1|	-	7.5e-07	29.5	25.1	0.0037	17.7	2.1	3.6	1	1	2	3	3	3	2	Nucleopolyhedrovirus	P10	protein
Baculo_PEP_C	PF04513.12	gi|390939077|ref|YP_006402815.1|	-	6.1e-06	26.3	36.6	0.0014	18.6	19.1	3.2	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Snapin_Pallidin	PF14712.6	gi|390939077|ref|YP_006402815.1|	-	1.6e-05	25.2	3.9	0.055	13.9	0.7	3.0	1	1	3	4	4	4	3	Snapin/Pallidin
EzrA	PF06160.12	gi|390939077|ref|YP_006402815.1|	-	2.2e-05	22.9	0.7	3.4e-05	22.2	0.7	1.2	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
DUF948	PF06103.11	gi|390939077|ref|YP_006402815.1|	-	3.1e-05	24.2	23.2	0.001	19.3	7.1	3.7	1	1	2	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF948)
XhlA	PF10779.9	gi|390939077|ref|YP_006402815.1|	-	6.1e-05	23.1	7.3	0.03	14.5	0.8	3.8	2	2	1	3	3	3	1	Haemolysin	XhlA
DUF4795	PF16043.5	gi|390939077|ref|YP_006402815.1|	-	0.00014	21.5	1.1	0.0012	18.4	1.0	2.2	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4795)
Laminin_II	PF06009.12	gi|390939077|ref|YP_006402815.1|	-	0.00017	21.7	21.7	0.048	13.7	4.7	3.0	1	1	2	3	3	3	2	Laminin	Domain	II
CLZ	PF16526.5	gi|390939077|ref|YP_006402815.1|	-	0.0003	21.1	0.0	0.43	11.0	0.0	3.7	1	1	3	4	4	4	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Sec34	PF04136.15	gi|390939077|ref|YP_006402815.1|	-	0.00059	19.7	9.3	0.28	11.0	2.4	3.1	1	1	2	3	3	3	2	Sec34-like	family
DUF16	PF01519.16	gi|390939077|ref|YP_006402815.1|	-	0.001	19.5	5.1	0.31	11.5	2.1	3.1	1	1	2	3	3	3	1	Protein	of	unknown	function	DUF16
Prominin	PF05478.11	gi|390939077|ref|YP_006402815.1|	-	0.0014	16.7	8.7	0.0023	16.0	8.7	1.2	1	0	0	1	1	1	1	Prominin
HSBP1	PF06825.12	gi|390939077|ref|YP_006402815.1|	-	0.0017	18.2	0.4	0.36	10.7	0.1	4.0	4	1	0	4	4	3	1	Heat	shock	factor	binding	protein	1
FlaC_arch	PF05377.11	gi|390939077|ref|YP_006402815.1|	-	0.0018	18.6	16.4	2.7	8.5	0.2	4.4	1	1	1	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
DUF3584	PF12128.8	gi|390939077|ref|YP_006402815.1|	-	0.0024	15.5	0.7	0.0032	15.1	0.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
Seryl_tRNA_N	PF02403.22	gi|390939077|ref|YP_006402815.1|	-	0.0024	18.1	3.6	0.27	11.5	0.6	2.4	1	1	1	2	2	2	1	Seryl-tRNA	synthetase	N-terminal	domain
Nup88	PF10168.9	gi|390939077|ref|YP_006402815.1|	-	0.0029	15.5	0.6	0.0041	15.0	0.6	1.1	1	0	0	1	1	1	1	Nuclear	pore	component
Phasin	PF05597.11	gi|390939077|ref|YP_006402815.1|	-	0.0033	17.4	7.4	0.035	14.1	0.4	2.3	1	1	1	2	2	2	1	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
RmuC	PF02646.16	gi|390939077|ref|YP_006402815.1|	-	0.0037	16.4	7.5	0.15	11.1	1.4	3.0	1	1	2	3	3	3	1	RmuC	family
LXG	PF04740.12	gi|390939077|ref|YP_006402815.1|	-	0.0041	16.9	4.3	0.0041	16.9	4.3	2.2	1	1	1	2	2	2	1	LXG	domain	of	WXG	superfamily
Spc7	PF08317.11	gi|390939077|ref|YP_006402815.1|	-	0.0045	15.9	0.9	0.0081	15.1	0.9	1.4	1	0	0	1	1	1	1	Spc7	kinetochore	protein
DUF677	PF05055.12	gi|390939077|ref|YP_006402815.1|	-	0.0047	15.9	14.7	0.18	10.7	3.1	2.6	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF677)
BLOC1_2	PF10046.9	gi|390939077|ref|YP_006402815.1|	-	0.0059	16.9	6.9	0.05	13.9	0.8	3.1	1	1	2	3	3	3	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
WXG100	PF06013.12	gi|390939077|ref|YP_006402815.1|	-	0.0073	16.5	4.2	1.3	9.3	0.3	3.6	1	1	2	3	3	3	1	Proteins	of	100	residues	with	WXG
DUF5082	PF16888.5	gi|390939077|ref|YP_006402815.1|	-	0.0076	16.5	13.7	0.23	11.8	5.0	3.2	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF5082)
DUF713	PF05218.14	gi|390939077|ref|YP_006402815.1|	-	0.0083	15.9	0.9	0.51	10.1	0.2	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF713)
COG2	PF06148.11	gi|390939077|ref|YP_006402815.1|	-	0.0095	16.0	10.5	2.6	8.2	1.2	3.3	1	1	2	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
IFT57	PF10498.9	gi|390939077|ref|YP_006402815.1|	-	0.011	14.7	6.2	0.056	12.4	5.1	2.0	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
Syntaxin_2	PF14523.6	gi|390939077|ref|YP_006402815.1|	-	0.012	15.9	21.0	0.04	14.3	5.6	2.9	1	1	2	3	3	3	0	Syntaxin-like	protein
DUF724	PF05266.14	gi|390939077|ref|YP_006402815.1|	-	0.013	15.4	1.2	0.02	14.7	0.5	1.6	1	1	1	2	2	1	0	Protein	of	unknown	function	(DUF724)
WEMBL	PF05701.11	gi|390939077|ref|YP_006402815.1|	-	0.014	14.1	3.7	0.022	13.5	3.7	1.2	1	0	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
Alanine_zipper	PF11839.8	gi|390939077|ref|YP_006402815.1|	-	0.015	15.6	12.7	0.039	14.3	2.3	3.8	1	1	3	4	4	4	0	Alanine-zipper,	major	outer	membrane	lipoprotein
T3SSipB	PF16535.5	gi|390939077|ref|YP_006402815.1|	-	0.015	15.7	8.9	4.2	7.8	7.7	2.9	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
AAA_13	PF13166.6	gi|390939077|ref|YP_006402815.1|	-	0.018	13.7	8.6	0.03	13.0	8.6	1.3	1	0	0	1	1	1	0	AAA	domain
DHC_N2	PF08393.13	gi|390939077|ref|YP_006402815.1|	-	0.019	14.1	0.5	0.028	13.5	0.5	1.1	1	0	0	1	1	1	0	Dynein	heavy	chain,	N-terminal	region	2
MCPsignal	PF00015.21	gi|390939077|ref|YP_006402815.1|	-	0.02	14.7	27.5	0.08	12.8	8.7	3.2	1	1	2	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF3829	PF12889.7	gi|390939077|ref|YP_006402815.1|	-	0.021	14.3	9.2	0.14	11.6	1.5	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3829)
TBCC_N	PF16752.5	gi|390939077|ref|YP_006402815.1|	-	0.022	15.2	6.2	1	9.8	2.7	2.8	2	1	1	3	3	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
TMPIT	PF07851.13	gi|390939077|ref|YP_006402815.1|	-	0.024	13.9	3.2	0.056	12.7	1.9	1.9	1	1	1	2	2	2	0	TMPIT-like	protein
Syntaxin	PF00804.25	gi|390939077|ref|YP_006402815.1|	-	0.025	14.3	7.8	0.36	10.5	2.2	2.1	1	1	1	2	2	2	0	Syntaxin
Tweety	PF04906.13	gi|390939077|ref|YP_006402815.1|	-	0.029	13.0	11.8	0.053	12.2	4.7	2.1	1	1	1	2	2	2	0	Tweety
CENP-F_leu_zip	PF10473.9	gi|390939077|ref|YP_006402815.1|	-	0.03	14.4	0.2	0.056	13.5	0.2	1.4	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Mod_r	PF07200.13	gi|390939077|ref|YP_006402815.1|	-	0.036	14.2	0.7	0.083	13.0	0.7	1.6	1	1	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
Nup54	PF13874.6	gi|390939077|ref|YP_006402815.1|	-	0.038	14.1	0.2	0.1	12.7	0.1	1.6	1	1	0	1	1	1	0	Nucleoporin	complex	subunit	54
Arfaptin	PF06456.13	gi|390939077|ref|YP_006402815.1|	-	0.042	13.4	3.4	0.05	13.2	1.2	1.8	1	1	1	2	2	2	0	Arfaptin-like	domain
TPR_MLP1_2	PF07926.12	gi|390939077|ref|YP_006402815.1|	-	0.053	13.6	1.2	0.4	10.7	0.2	2.3	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
GrpE	PF01025.19	gi|390939077|ref|YP_006402815.1|	-	0.059	13.0	2.7	1.3	8.7	0.2	2.3	1	1	1	2	2	2	0	GrpE
SesA	PF17107.5	gi|390939077|ref|YP_006402815.1|	-	0.066	13.4	7.7	1.9	8.7	3.0	2.5	1	1	2	3	3	3	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
APG17	PF04108.12	gi|390939077|ref|YP_006402815.1|	-	0.088	11.9	6.1	0.22	10.6	6.1	1.6	1	1	0	1	1	1	0	Autophagy	protein	Apg17
FPP	PF05911.11	gi|390939077|ref|YP_006402815.1|	-	0.09	11.0	13.1	0.12	10.5	13.1	1.0	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
DUF4446	PF14584.6	gi|390939077|ref|YP_006402815.1|	-	0.11	12.4	2.9	9.8	6.1	0.3	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF4446)
Sec3_C	PF09763.9	gi|390939077|ref|YP_006402815.1|	-	0.12	10.8	6.1	0.28	9.5	0.9	2.5	2	1	1	3	3	3	0	Exocyst	complex	component	Sec3
Rx_N	PF18052.1	gi|390939077|ref|YP_006402815.1|	-	0.12	12.7	0.0	0.92	9.8	0.0	2.2	2	1	1	3	3	2	0	Rx	N-terminal	domain
DUF2408	PF10303.9	gi|390939077|ref|YP_006402815.1|	-	0.12	12.9	2.7	0.47	11.0	2.8	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
Tektin	PF03148.14	gi|390939077|ref|YP_006402815.1|	-	0.13	11.0	0.0	0.2	10.4	0.0	1.2	1	0	0	1	1	1	0	Tektin	family
LOH1CR12	PF10158.9	gi|390939077|ref|YP_006402815.1|	-	0.16	12.0	5.7	0.31	11.1	2.0	2.4	1	1	2	3	3	3	0	Tumour	suppressor	protein
Lectin_N	PF03954.14	gi|390939077|ref|YP_006402815.1|	-	0.17	11.6	13.2	0.4	10.4	4.1	2.4	1	1	1	2	2	2	0	Hepatic	lectin,	N-terminal	domain
KxDL	PF10241.9	gi|390939077|ref|YP_006402815.1|	-	0.18	12.1	0.3	1.5	9.1	0.1	2.5	1	1	1	3	3	1	0	Uncharacterized	conserved	protein
DUF3450	PF11932.8	gi|390939077|ref|YP_006402815.1|	-	0.18	11.1	1.0	0.33	10.2	1.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
AIP3	PF03915.13	gi|390939077|ref|YP_006402815.1|	-	0.19	10.8	10.8	0.3	10.1	10.8	1.2	1	0	0	1	1	1	0	Actin	interacting	protein	3
DUF4349	PF14257.6	gi|390939077|ref|YP_006402815.1|	-	0.2	11.1	10.6	1.4	8.3	10.3	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
Tropomyosin	PF00261.20	gi|390939077|ref|YP_006402815.1|	-	0.2	11.0	0.0	0.58	9.5	0.0	1.5	1	1	0	1	1	1	0	Tropomyosin
T7SS_ESX_EspC	PF10824.8	gi|390939077|ref|YP_006402815.1|	-	0.21	12.1	12.7	0.48	10.9	0.6	3.6	1	1	2	3	3	3	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
Apolipoprotein	PF01442.18	gi|390939077|ref|YP_006402815.1|	-	0.22	11.4	0.0	0.34	10.8	0.0	1.2	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
TssO	PF17561.2	gi|390939077|ref|YP_006402815.1|	-	0.22	11.6	6.7	8.2	6.5	0.9	3.2	1	1	2	3	3	3	0	Type	VI	secretion	system,	TssO
MscS_porin	PF12795.7	gi|390939077|ref|YP_006402815.1|	-	0.26	10.8	2.9	0.37	10.3	1.9	1.5	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
ALIX_LYPXL_bnd	PF13949.6	gi|390939077|ref|YP_006402815.1|	-	0.26	10.5	4.4	0.47	9.7	4.4	1.4	1	0	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
RPW8	PF05659.11	gi|390939077|ref|YP_006402815.1|	-	0.26	10.9	1.2	3.1	7.5	0.1	2.4	1	1	1	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
HBM	PF16591.5	gi|390939077|ref|YP_006402815.1|	-	0.27	10.6	4.2	5	6.5	0.3	2.2	1	1	1	2	2	2	0	Helical	bimodular	sensor	domain
TRPM_tetra	PF16519.5	gi|390939077|ref|YP_006402815.1|	-	0.3	11.2	6.4	7.4	6.8	0.1	3.8	3	1	1	4	4	4	0	Tetramerisation	domain	of	TRPM
BAR_3	PF16746.5	gi|390939077|ref|YP_006402815.1|	-	0.34	10.6	1.3	0.86	9.3	0.4	1.8	1	1	1	2	2	2	0	BAR	domain	of	APPL	family
Fez1	PF06818.15	gi|390939077|ref|YP_006402815.1|	-	0.35	11.3	0.1	0.58	10.6	0.1	1.3	1	0	0	1	1	1	0	Fez1
YlbD_coat	PF14071.6	gi|390939077|ref|YP_006402815.1|	-	0.37	11.1	12.5	0.7	10.1	1.5	3.2	1	1	2	3	3	3	0	Putative	coat	protein
HOOK	PF05622.12	gi|390939077|ref|YP_006402815.1|	-	0.37	8.9	1.4	1	7.4	1.0	1.6	1	1	1	2	2	2	0	HOOK	protein
Fzo_mitofusin	PF04799.13	gi|390939077|ref|YP_006402815.1|	-	0.47	10.0	2.7	0.45	10.0	0.4	2.1	2	1	1	3	3	2	0	fzo-like	conserved	region
AATF-Che1	PF13339.6	gi|390939077|ref|YP_006402815.1|	-	0.49	11.1	7.1	1.1e+02	3.5	7.1	2.4	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
Fib_alpha	PF08702.10	gi|390939077|ref|YP_006402815.1|	-	0.96	9.6	13.9	0.53	10.5	4.0	2.3	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
CorA	PF01544.18	gi|390939077|ref|YP_006402815.1|	-	0.97	8.7	7.2	0.69	9.2	1.7	2.4	1	1	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
BAR_2	PF10455.9	gi|390939077|ref|YP_006402815.1|	-	1.1	8.3	8.6	1.8	7.7	8.6	1.2	1	0	0	1	1	1	0	Bin/amphiphysin/Rvs	domain	for	vesicular	trafficking
SKA1	PF07160.12	gi|390939077|ref|YP_006402815.1|	-	1.1	9.0	5.9	6.3	6.6	4.8	2.3	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
HsbA	PF12296.8	gi|390939077|ref|YP_006402815.1|	-	1.7	9.1	34.2	10	6.6	17.3	3.3	1	1	1	2	2	2	0	Hydrophobic	surface	binding	protein	A
Laminin_I	PF06008.14	gi|390939077|ref|YP_006402815.1|	-	1.7	8.2	8.9	12	5.5	8.3	1.9	1	1	0	1	1	1	0	Laminin	Domain	I
Allexi_40kDa	PF05549.11	gi|390939077|ref|YP_006402815.1|	-	1.8	8.0	17.8	1.7	8.1	10.0	2.2	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
ISG65-75	PF11727.8	gi|390939077|ref|YP_006402815.1|	-	2.7	7.2	9.0	2.7	7.1	2.8	2.1	1	1	1	2	2	2	0	Invariant	surface	glycoprotein
DUF745	PF05335.13	gi|390939077|ref|YP_006402815.1|	-	3	7.5	10.5	1	9.0	5.6	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF745)
MtrB	PF05440.12	gi|390939077|ref|YP_006402815.1|	-	3.2	8.2	7.8	23	5.5	0.4	4.0	1	1	2	3	3	3	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
Cauli_DNA-bind	PF03310.13	gi|390939077|ref|YP_006402815.1|	-	3.6	7.7	10.7	7.8	6.6	1.2	2.5	1	1	1	2	2	2	0	Caulimovirus	DNA-binding	protein
ApoO	PF09769.9	gi|390939077|ref|YP_006402815.1|	-	3.8	7.5	12.6	86	3.1	5.5	4.3	3	1	1	4	4	2	0	Apolipoprotein	O
LPP	PF04728.13	gi|390939077|ref|YP_006402815.1|	-	4.7	7.7	33.8	5.3	7.5	3.3	5.4	1	1	5	6	6	6	0	Lipoprotein	leucine-zipper
DUF2959	PF11172.8	gi|390939077|ref|YP_006402815.1|	-	4.9	7.3	8.6	19	5.3	8.6	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2959)
End3	PF12761.7	gi|390939077|ref|YP_006402815.1|	-	5.8	7.0	6.9	8.3	6.5	0.8	3.1	1	1	3	4	4	3	0	Actin	cytoskeleton-regulatory	complex	protein	END3
DUF148	PF02520.17	gi|390939077|ref|YP_006402815.1|	-	6	7.0	14.3	3.6	7.7	3.6	3.3	1	1	2	3	3	3	0	Domain	of	unknown	function	DUF148
Vps5	PF09325.10	gi|390939077|ref|YP_006402815.1|	-	6	6.3	7.7	7.9	5.9	6.8	1.6	1	1	1	2	2	1	0	Vps5	C	terminal	like
TBK1_CCD1	PF18394.1	gi|390939077|ref|YP_006402815.1|	-	6.3	6.3	7.2	7.1	6.1	5.1	1.9	1	1	1	2	2	2	0	TANK-binding	kinase	1	coiled-coil	domain	1
PIN_8	PF18476.1	gi|390939077|ref|YP_006402815.1|	-	6.4	6.6	6.4	32	4.3	6.4	1.9	1	1	0	1	1	1	0	PIN	like	domain
DNA_repr_REX1B	PF14966.6	gi|390939077|ref|YP_006402815.1|	-	6.5	7.5	8.6	11	6.8	0.4	3.4	1	1	2	3	3	3	0	DNA	repair	REX1-B
Peptidase_S8	PF00082.22	gi|390939078|ref|YP_006402816.1|	-	3.2e-37	128.4	0.0	6e-37	127.5	0.0	1.4	1	0	0	1	1	1	1	Subtilase	family
RHH_3	PF12651.7	gi|390939079|ref|YP_006402817.1|	-	0.39	10.7	2.5	0.6	10.1	0.1	2.4	2	1	0	2	2	2	0	Ribbon-helix-helix	domain
RHH_1	PF01402.21	gi|390939080|ref|YP_006402818.1|	-	0.0018	18.1	0.2	0.0018	18.1	0.2	2.0	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|390939080|ref|YP_006402818.1|	-	0.027	14.4	0.2	0.082	12.9	0.2	1.8	1	1	0	1	1	1	0	Ribbon-helix-helix	domain
PP-binding	PF00550.25	gi|390939080|ref|YP_006402818.1|	-	0.11	12.8	0.2	0.23	11.8	0.2	1.5	1	0	0	1	1	1	0	Phosphopantetheine	attachment	site
Proteasome	PF00227.26	gi|390939081|ref|YP_006402819.1|	-	3.4e-54	183.2	0.0	3.8e-54	183.1	0.0	1.0	1	0	0	1	1	1	1	Proteasome	subunit
PIN	PF01850.21	gi|390939082|ref|YP_006402820.1|	-	3.8e-06	27.4	1.6	5.3e-06	27.0	1.6	1.2	1	0	0	1	1	1	1	PIN	domain
YpjP	PF14005.6	gi|390939083|ref|YP_006402821.1|	-	0.0034	17.4	0.1	0.0039	17.2	0.1	1.1	1	0	0	1	1	1	1	YpjP-like	protein
LEM	PF03020.15	gi|390939083|ref|YP_006402821.1|	-	0.023	14.3	0.6	0.05	13.2	0.0	1.8	2	0	0	2	2	2	0	LEM	domain
tRNA_NucTran2_2	PF13735.6	gi|390939083|ref|YP_006402821.1|	-	0.07	13.1	0.2	0.093	12.7	0.2	1.2	1	0	0	1	1	1	0	tRNA	nucleotidyltransferase	domain	2	putative
EamA	PF00892.20	gi|390939084|ref|YP_006402822.1|	-	2.4e-35	121.7	38.0	7.4e-23	81.2	12.8	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|390939084|ref|YP_006402822.1|	-	1.3e-09	37.8	15.2	5.9e-08	32.4	3.5	2.3	1	1	1	2	2	2	2	Triose-phosphate	Transporter	family
DUF4500	PF14937.6	gi|390939084|ref|YP_006402822.1|	-	0.44	10.6	1.7	0.74	9.9	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4500)
MMR_HSR1	PF01926.23	gi|390939085|ref|YP_006402823.1|	-	4.8e-22	78.2	0.2	1.2e-21	76.9	0.0	1.7	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
NOG1	PF06858.14	gi|390939085|ref|YP_006402823.1|	-	6.6e-19	67.4	0.2	1.3e-18	66.5	0.2	1.5	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
FeoB_N	PF02421.18	gi|390939085|ref|YP_006402823.1|	-	1.5e-10	40.8	0.1	3e-10	39.8	0.1	1.5	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
NOG1_N	PF17835.1	gi|390939085|ref|YP_006402823.1|	-	6.6e-08	32.7	0.1	1.2e-07	31.8	0.1	1.5	1	0	0	1	1	1	1	NOG1	N-terminal	helical	domain
Dynamin_N	PF00350.23	gi|390939085|ref|YP_006402823.1|	-	0.00016	21.8	0.6	0.028	14.5	0.0	2.4	2	0	0	2	2	2	1	Dynamin	family
GTP_EFTU	PF00009.27	gi|390939085|ref|YP_006402823.1|	-	0.00017	21.2	0.2	0.042	13.4	0.1	2.9	1	1	1	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|390939085|ref|YP_006402823.1|	-	0.00026	20.9	1.8	0.39	10.6	0.1	2.9	2	1	1	3	3	3	2	RsgA	GTPase
Ras	PF00071.22	gi|390939085|ref|YP_006402823.1|	-	0.0053	16.4	0.1	0.062	12.9	0.1	2.2	1	1	0	1	1	1	1	Ras	family
MMR_HSR1_Xtn	PF16897.5	gi|390939085|ref|YP_006402823.1|	-	0.007	16.4	0.0	0.015	15.3	0.0	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
Gtr1_RagA	PF04670.12	gi|390939085|ref|YP_006402823.1|	-	0.013	14.9	0.0	0.033	13.5	0.0	1.7	2	0	0	2	2	2	0	Gtr1/RagA	G	protein	conserved	region
Roc	PF08477.13	gi|390939085|ref|YP_006402823.1|	-	0.015	15.5	0.1	3	8.1	0.0	2.4	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
MeaB	PF03308.16	gi|390939085|ref|YP_006402823.1|	-	0.028	13.4	0.0	0.054	12.5	0.0	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
SRPRB	PF09439.10	gi|390939085|ref|YP_006402823.1|	-	0.043	13.2	0.0	0.075	12.5	0.0	1.5	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
NTPase_1	PF03266.15	gi|390939085|ref|YP_006402823.1|	-	0.049	13.5	0.8	0.17	11.8	0.1	2.1	2	0	0	2	2	2	0	NTPase
AAA_18	PF13238.6	gi|390939085|ref|YP_006402823.1|	-	0.054	14.1	0.0	0.12	12.9	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|390939085|ref|YP_006402823.1|	-	0.077	12.4	0.0	13	5.1	0.0	2.4	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|390939085|ref|YP_006402823.1|	-	0.11	12.3	0.0	0.31	10.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.19	gi|390939085|ref|YP_006402823.1|	-	0.12	12.0	0.2	6.9	6.2	0.0	2.5	3	0	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_14	PF13173.6	gi|390939085|ref|YP_006402823.1|	-	0.12	12.4	0.2	0.48	10.5	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
RTC	PF01137.21	gi|390939086|ref|YP_006402824.1|	-	6.5e-81	270.8	0.0	7.4e-81	270.6	0.0	1.0	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.13	gi|390939086|ref|YP_006402824.1|	-	6.8e-23	81.1	0.0	1.1e-22	80.5	0.0	1.3	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
CTP_transf_like	PF01467.26	gi|390939087|ref|YP_006402825.1|	-	2e-12	47.5	0.0	2.6e-12	47.1	0.0	1.4	1	1	0	1	1	1	1	Cytidylyltransferase-like
HIGH_NTase1	PF05636.11	gi|390939087|ref|YP_006402825.1|	-	0.086	12.0	0.0	0.94	8.6	0.0	2.0	2	0	0	2	2	2	0	HIGH	Nucleotidyl	Transferase
Beta-Casp	PF10996.8	gi|390939088|ref|YP_006402826.1|	-	8.8e-24	83.9	0.0	1.8e-23	82.9	0.0	1.6	1	0	0	1	1	1	1	Beta-Casp	domain
KH_7	PF17214.3	gi|390939088|ref|YP_006402826.1|	-	4.8e-19	68.1	2.5	1.4e-18	66.6	2.5	1.9	1	0	0	1	1	1	1	KH	domain
Lactamase_B_6	PF16661.5	gi|390939088|ref|YP_006402826.1|	-	5.9e-17	61.7	0.0	1.1e-15	57.6	0.0	2.1	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|390939088|ref|YP_006402826.1|	-	1.3e-16	60.3	0.1	4.6e-15	55.3	0.0	2.6	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_2	PF12706.7	gi|390939088|ref|YP_006402826.1|	-	7.5e-10	38.7	0.1	2.4e-09	37.0	0.1	1.7	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|390939088|ref|YP_006402826.1|	-	3.4e-09	37.0	2.3	1.1e-07	32.1	2.4	2.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.6	gi|390939088|ref|YP_006402826.1|	-	0.0038	17.1	0.1	0.026	14.4	0.0	2.4	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
DUF4365	PF14280.6	gi|390939088|ref|YP_006402826.1|	-	0.068	13.1	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4365)
Proteasome	PF00227.26	gi|390939089|ref|YP_006402827.1|	-	4.2e-52	176.4	0.6	4.9e-52	176.2	0.6	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Fe-ADH_2	PF13685.6	gi|390939090|ref|YP_006402828.1|	-	3.9e-78	262.6	0.1	4.6e-78	262.4	0.1	1.0	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|390939090|ref|YP_006402828.1|	-	3.9e-23	81.9	0.5	5.4e-22	78.1	0.5	2.0	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|390939090|ref|YP_006402828.1|	-	2.2e-07	30.3	0.0	0.00092	18.4	0.0	2.9	2	1	0	2	2	2	2	3-dehydroquinate	synthase
FKBP_C	PF00254.28	gi|390939091|ref|YP_006402829.1|	-	6.7e-07	29.5	0.0	2.4e-06	27.8	0.0	1.9	1	1	1	2	2	2	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
FKBP26_C	PF18046.1	gi|390939091|ref|YP_006402829.1|	-	7.6e-06	25.9	1.7	3.7e-05	23.7	0.9	2.3	2	0	0	2	2	2	1	FKBP26_C-terminal
DUF3553	PF12073.8	gi|390939091|ref|YP_006402829.1|	-	0.03	14.0	0.1	0.076	12.7	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3553)
AphA_like	PF14557.6	gi|390939091|ref|YP_006402829.1|	-	0.089	12.5	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Putative	AphA-like	transcriptional	regulator
MS_channel	PF00924.18	gi|390939091|ref|YP_006402829.1|	-	0.12	11.9	1.5	0.18	11.3	0.4	1.8	2	1	0	2	2	2	0	Mechanosensitive	ion	channel
WPP	PF13943.6	gi|390939091|ref|YP_006402829.1|	-	0.14	12.6	0.2	0.21	12.0	0.2	1.3	1	0	0	1	1	1	0	WPP	domain
PUA	PF01472.20	gi|390939092|ref|YP_006402830.1|	-	6e-20	71.0	1.7	7.9e-20	70.6	1.7	1.2	1	0	0	1	1	1	1	PUA	domain
DUF1947	PF09183.10	gi|390939092|ref|YP_006402830.1|	-	4.2e-12	46.2	0.3	8.2e-12	45.2	0.3	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1947)
UPF0113	PF03657.13	gi|390939092|ref|YP_006402830.1|	-	0.011	16.0	0.2	0.024	14.9	0.1	1.6	2	0	0	2	2	2	0	UPF0113	PUA	domain
ChapFlgA	PF13144.6	gi|390939092|ref|YP_006402830.1|	-	0.1	12.6	0.1	0.14	12.2	0.1	1.3	1	0	0	1	1	1	0	Chaperone	for	flagella	basal	body	P-ring	formation
Toprim_4	PF13662.6	gi|390939093|ref|YP_006402831.1|	-	2.2e-09	37.7	0.8	1.4e-08	35.1	0.1	2.5	2	1	0	2	2	2	1	Toprim	domain
Toprim_2	PF13155.6	gi|390939093|ref|YP_006402831.1|	-	3.7e-05	24.0	0.0	0.00013	22.3	0.0	1.9	2	0	0	2	2	2	1	Toprim-like
Toprim	PF01751.22	gi|390939093|ref|YP_006402831.1|	-	6e-05	23.2	0.2	0.00024	21.3	0.0	2.2	2	0	0	2	2	2	1	Toprim	domain
Ribosomal_L37e	PF01907.19	gi|390939094|ref|YP_006402832.1|	-	4.3e-25	87.6	12.0	4.8e-25	87.5	12.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
DUF35_N	PF12172.8	gi|390939094|ref|YP_006402832.1|	-	4.2	7.3	9.7	43	4.1	9.7	2.1	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
LSM	PF01423.22	gi|390939095|ref|YP_006402833.1|	-	1.3e-23	82.4	0.4	1.4e-23	82.3	0.4	1.0	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|390939095|ref|YP_006402833.1|	-	0.015	15.4	0.0	0.019	15.1	0.0	1.2	1	0	0	1	1	1	0	Ataxin	2	SM	domain
DNA_pol_B	PF00136.21	gi|390939096|ref|YP_006402834.1|	-	1.1e-72	245.2	0.0	1.6e-72	244.7	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|390939096|ref|YP_006402834.1|	-	7.3e-42	143.7	0.1	3.1e-40	138.3	0.1	2.2	1	1	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.6	gi|390939096|ref|YP_006402834.1|	-	1.4e-09	38.2	0.1	3.7e-09	36.8	0.0	1.8	2	0	0	2	2	2	1	RNase_H	superfamily
DNA_pol_B_exo2	PF10108.9	gi|390939096|ref|YP_006402834.1|	-	8.2e-07	28.9	0.0	1.6e-06	28.0	0.0	1.4	1	0	0	1	1	1	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
DNA_pol_B_2	PF03175.13	gi|390939096|ref|YP_006402834.1|	-	0.066	12.1	0.0	0.12	11.2	0.0	1.3	1	0	0	1	1	1	0	DNA	polymerase	type	B,	organellar	and	viral
eRF1_1	PF03463.15	gi|390939097|ref|YP_006402835.1|	-	1.9e-22	79.6	0.0	3.2e-22	78.9	0.0	1.4	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.15	gi|390939097|ref|YP_006402835.1|	-	4.1e-19	69.1	0.1	1.1e-18	67.8	0.1	1.7	1	0	0	1	1	1	1	eRF1	domain	3
eRF1_2	PF03464.15	gi|390939097|ref|YP_006402835.1|	-	6.3e-13	49.2	0.0	2e-12	47.6	0.0	1.9	2	0	0	2	2	2	1	eRF1	domain	2
baeRF_family10	PF18854.1	gi|390939097|ref|YP_006402835.1|	-	0.00062	20.0	0.1	0.0051	17.0	0.0	2.6	3	1	1	4	4	4	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
Metallophos_2	PF12850.7	gi|390939097|ref|YP_006402835.1|	-	0.03	14.5	0.4	0.46	10.7	0.1	2.3	1	1	1	2	2	2	0	Calcineurin-like	phosphoesterase	superfamily	domain
NTP_transf_2	PF01909.23	gi|390939098|ref|YP_006402836.1|	-	1.2e-05	25.5	0.0	2.5e-05	24.5	0.0	1.7	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|390939098|ref|YP_006402836.1|	-	6.3e-05	23.0	0.0	0.00012	22.1	0.0	1.5	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
Peptidase_M50	PF02163.22	gi|390939099|ref|YP_006402837.1|	-	2.7e-15	56.3	11.8	2.3e-14	53.3	11.8	2.2	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ	PF00595.24	gi|390939099|ref|YP_006402837.1|	-	1.5e-08	34.9	0.0	3.2e-08	33.8	0.0	1.6	1	0	0	1	1	1	1	PDZ	domain
PDZ_6	PF17820.1	gi|390939099|ref|YP_006402837.1|	-	2.3e-07	30.5	0.0	5.2e-07	29.4	0.0	1.6	1	0	0	1	1	1	1	PDZ	domain
PDZ_2	PF13180.6	gi|390939099|ref|YP_006402837.1|	-	5.9e-07	29.7	0.0	1.2e-06	28.8	0.0	1.4	1	0	0	1	1	1	1	PDZ	domain
PALP	PF00291.25	gi|390939100|ref|YP_006402838.1|	-	1.1e-64	218.7	0.0	1.3e-64	218.4	0.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Rubredoxin_2	PF18073.1	gi|390939100|ref|YP_006402838.1|	-	0.0021	17.7	7.9	0.005	16.5	7.9	1.7	1	0	0	1	1	1	1	Rubredoxin	metal	binding	domain
HypA	PF01155.19	gi|390939100|ref|YP_006402838.1|	-	0.049	13.7	0.2	0.084	12.9	0.2	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_ribbon_SprT	PF17283.2	gi|390939100|ref|YP_006402838.1|	-	0.085	12.8	1.6	0.53	10.2	0.2	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Mu-like_Com	PF10122.9	gi|390939100|ref|YP_006402838.1|	-	0.1	12.1	0.2	0.21	11.1	0.2	1.4	1	0	0	1	1	1	0	Mu-like	prophage	protein	Com
Zn-ribbon_8	PF09723.10	gi|390939100|ref|YP_006402838.1|	-	0.17	12.0	0.7	0.32	11.1	0.7	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|390939100|ref|YP_006402838.1|	-	0.25	11.3	2.1	1.4	8.9	2.6	2.0	2	1	0	2	2	2	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.6	gi|390939100|ref|YP_006402838.1|	-	0.25	11.1	5.5	0.67	9.7	5.6	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-HIT	PF04438.16	gi|390939100|ref|YP_006402838.1|	-	0.53	10.2	2.3	1.4	8.9	2.3	1.6	1	1	0	1	1	1	0	HIT	zinc	finger
zf-ribbon_3	PF13248.6	gi|390939100|ref|YP_006402838.1|	-	0.64	9.5	4.1	1.1	8.7	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
HalOD2	PF18547.1	gi|390939100|ref|YP_006402838.1|	-	1.5	8.8	5.3	3.7	7.5	0.2	2.4	1	1	1	2	2	2	0	Halobacterial	output	domain	2
zf-RanBP	PF00641.18	gi|390939100|ref|YP_006402838.1|	-	2.1	7.8	4.5	4	6.8	0.5	2.2	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Rubredoxin	PF00301.20	gi|390939100|ref|YP_006402838.1|	-	3.2	7.9	5.6	10	6.2	0.7	2.6	2	0	0	2	2	2	0	Rubredoxin
Ribosomal_S26e	PF01283.19	gi|390939101|ref|YP_006402839.1|	-	2.5e-23	82.5	2.6	3.1e-23	82.2	2.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S26e
zf-RING_7	PF02591.15	gi|390939101|ref|YP_006402839.1|	-	0.012	15.8	1.9	0.19	11.9	0.6	2.4	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
DZR	PF12773.7	gi|390939101|ref|YP_006402839.1|	-	0.025	14.6	1.0	0.26	11.3	0.1	2.1	2	0	0	2	2	2	0	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|390939101|ref|YP_006402839.1|	-	0.046	13.3	0.1	0.093	12.3	0.1	1.5	1	0	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
PIN	PF01850.21	gi|390939102|ref|YP_006402840.1|	-	4.5e-13	49.8	3.6	2.1e-12	47.6	3.6	1.8	1	1	0	1	1	1	1	PIN	domain
RHH_1	PF01402.21	gi|390939103|ref|YP_006402841.1|	-	1.6e-07	31.0	1.1	2.4e-07	30.4	0.2	1.8	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
Fur_reg_FbpA	PF13076.6	gi|390939103|ref|YP_006402841.1|	-	0.0024	17.5	0.1	0.0071	16.0	0.0	1.9	2	0	0	2	2	2	1	Fur-regulated	basic	protein	A
GP24_25	PF17388.2	gi|390939103|ref|YP_006402841.1|	-	0.063	13.3	0.3	0.072	13.1	0.3	1.2	1	0	0	1	1	1	0	Tail	assembly	gene	products	24	&	25
Methyltransf_31	PF13847.6	gi|390939105|ref|YP_006402843.1|	-	7.7e-08	32.3	0.0	9.5e-08	32.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|390939105|ref|YP_006402843.1|	-	2.4e-06	28.1	0.0	3.5e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
DOT1	PF08123.13	gi|390939105|ref|YP_006402843.1|	-	3.3e-06	26.8	0.1	1.7e-05	24.5	0.1	1.9	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
CMAS	PF02353.20	gi|390939105|ref|YP_006402843.1|	-	1.8e-05	24.2	0.0	2e-05	24.0	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_4	PF02390.17	gi|390939105|ref|YP_006402843.1|	-	4.1e-05	23.1	0.0	5.3e-05	22.8	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_18	PF12847.7	gi|390939105|ref|YP_006402843.1|	-	8.6e-05	22.5	0.0	0.00019	21.4	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
PrmA	PF06325.13	gi|390939105|ref|YP_006402843.1|	-	0.00012	21.6	0.0	0.00014	21.4	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MetW	PF07021.12	gi|390939105|ref|YP_006402843.1|	-	0.00016	21.3	0.0	0.00017	21.2	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_11	PF08241.12	gi|390939105|ref|YP_006402843.1|	-	0.0046	17.6	0.0	0.0065	17.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|390939105|ref|YP_006402843.1|	-	0.006	16.4	0.0	0.0069	16.2	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
TrmK	PF04816.12	gi|390939105|ref|YP_006402843.1|	-	0.014	14.9	0.1	0.097	12.2	0.0	2.1	1	1	2	3	3	3	0	tRNA	(adenine(22)-N(1))-methyltransferase
Methyltransf_23	PF13489.6	gi|390939105|ref|YP_006402843.1|	-	0.02	14.7	0.0	0.022	14.6	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.14	gi|390939105|ref|YP_006402843.1|	-	0.022	14.3	0.0	0.029	13.9	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_2	PF00891.18	gi|390939105|ref|YP_006402843.1|	-	0.038	13.3	0.0	0.051	12.9	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase	domain
Methyltransf_12	PF08242.12	gi|390939105|ref|YP_006402843.1|	-	0.042	14.6	0.0	0.088	13.6	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|390939105|ref|YP_006402843.1|	-	0.084	12.4	0.0	0.084	12.4	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Methyltransf_20	PF12147.8	gi|390939105|ref|YP_006402843.1|	-	0.12	11.5	0.1	0.15	11.1	0.1	1.1	1	0	0	1	1	1	0	Putative	methyltransferase
UPF0020	PF01170.18	gi|390939105|ref|YP_006402843.1|	-	0.12	12.0	0.2	0.48	10.1	0.2	1.8	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Glyco_transf_20	PF00982.21	gi|390939105|ref|YP_006402843.1|	-	0.13	10.9	0.0	0.16	10.6	0.0	1.0	1	0	0	1	1	1	0	Glycosyltransferase	family	20
GCD14	PF08704.10	gi|390939106|ref|YP_006402844.1|	-	4.2e-33	115.1	0.0	9.5e-30	104.1	0.0	2.0	1	1	1	2	2	2	2	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_31	PF13847.6	gi|390939106|ref|YP_006402844.1|	-	1e-07	31.8	0.0	1.4e-07	31.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|390939106|ref|YP_006402844.1|	-	1.1e-05	25.3	0.0	2.1e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_25	PF13649.6	gi|390939106|ref|YP_006402844.1|	-	1.4e-05	25.7	0.0	2.4e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|390939106|ref|YP_006402844.1|	-	2.2e-05	23.9	0.0	3.2e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_24	PF13578.6	gi|390939106|ref|YP_006402844.1|	-	0.0012	19.9	0.0	0.0028	18.7	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|390939106|ref|YP_006402844.1|	-	0.0014	18.3	0.0	0.0023	17.6	0.0	1.3	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_11	PF08241.12	gi|390939106|ref|YP_006402844.1|	-	0.0019	18.8	0.0	0.0067	17.1	0.0	1.9	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|390939106|ref|YP_006402844.1|	-	0.0048	17.6	0.0	0.0098	16.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14_N	PF14801.6	gi|390939106|ref|YP_006402844.1|	-	0.0064	16.3	0.0	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit	N-term
Fibrillarin	PF01269.17	gi|390939106|ref|YP_006402844.1|	-	0.023	13.8	0.0	0.037	13.2	0.0	1.3	1	0	0	1	1	1	0	Fibrillarin
rRNA_methylase	PF06962.12	gi|390939106|ref|YP_006402844.1|	-	0.036	14.0	0.0	0.079	12.9	0.0	1.5	1	0	0	1	1	1	0	Putative	rRNA	methylase
Methyltransf_4	PF02390.17	gi|390939106|ref|YP_006402844.1|	-	0.049	13.1	0.0	0.078	12.4	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
Methyltransf_32	PF13679.6	gi|390939106|ref|YP_006402844.1|	-	0.22	11.5	0.0	0.28	11.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
EVE	PF01878.18	gi|390939107|ref|YP_006402845.1|	-	0.052	13.6	0.0	0.081	12.9	0.0	1.4	1	0	0	1	1	1	0	EVE	domain
RHH_1	PF01402.21	gi|390939108|ref|YP_006402846.1|	-	3.8e-09	36.2	0.1	5.5e-09	35.6	0.1	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|390939108|ref|YP_006402846.1|	-	1.6e-05	25.1	0.0	1.7e-05	25.0	0.0	1.0	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
ParD_antitoxin	PF03693.14	gi|390939108|ref|YP_006402846.1|	-	0.00059	20.2	0.0	0.00062	20.1	0.0	1.1	1	0	0	1	1	1	1	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
VapB_antitoxin	PF09957.9	gi|390939108|ref|YP_006402846.1|	-	0.002	18.0	0.0	0.0024	17.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	antitoxin	of	type	II	TA	system,	VapB
DUF3254	PF11630.8	gi|390939108|ref|YP_006402846.1|	-	0.16	12.2	0.0	0.16	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3254)
PMT_2	PF13231.6	gi|390939109|ref|YP_006402847.1|	-	6.8e-12	45.9	12.6	6.8e-12	45.9	12.6	3.0	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.18	gi|390939109|ref|YP_006402847.1|	-	5.5e-05	22.9	15.5	5.5e-05	22.9	15.5	3.6	2	2	2	4	4	4	2	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DNA_pol_B	PF00136.21	gi|390939111|ref|YP_006402849.1|	-	2.1e-45	155.3	0.0	5e-45	154.1	0.0	1.6	1	1	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|390939111|ref|YP_006402849.1|	-	3.1e-28	98.9	0.2	7.6e-28	97.6	0.2	1.6	1	0	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.6	gi|390939111|ref|YP_006402849.1|	-	2.7e-05	24.2	0.1	0.00024	21.1	0.0	2.7	4	0	0	4	4	4	1	RNase_H	superfamily
DNA_pol_B_exo2	PF10108.9	gi|390939111|ref|YP_006402849.1|	-	0.021	14.5	0.0	0.05	13.3	0.0	1.6	1	0	0	1	1	1	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
NAC	PF01849.18	gi|390939112|ref|YP_006402850.1|	-	6.6e-13	48.4	2.3	1.6e-12	47.2	0.2	2.2	2	0	0	2	2	2	1	NAC	domain
Clp_N	PF02861.20	gi|390939112|ref|YP_006402850.1|	-	0.011	15.9	0.0	0.92	9.7	0.0	2.6	3	0	0	3	3	3	0	Clp	amino	terminal	domain,	pathogenicity	island	component
RTC4	PF14474.6	gi|390939112|ref|YP_006402850.1|	-	0.018	15.2	0.0	0.025	14.8	0.0	1.2	1	0	0	1	1	1	0	RTC4-like	domain
Beta-Casp	PF10996.8	gi|390939113|ref|YP_006402851.1|	-	1.7e-19	70.1	0.0	3e-19	69.3	0.0	1.4	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B_6	PF16661.5	gi|390939113|ref|YP_006402851.1|	-	1.4e-12	47.5	0.0	2.4e-12	46.7	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|390939113|ref|YP_006402851.1|	-	1.7e-12	47.1	0.0	3.9e-12	45.9	0.0	1.6	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|390939113|ref|YP_006402851.1|	-	8.6e-10	38.9	0.4	1.8e-09	37.9	0.4	1.6	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|390939113|ref|YP_006402851.1|	-	6e-05	22.7	0.0	0.00017	21.2	0.0	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|390939113|ref|YP_006402851.1|	-	0.0077	16.1	0.0	0.028	14.3	0.0	1.8	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
GTP_EFTU	PF00009.27	gi|390939114|ref|YP_006402852.1|	-	2.7e-61	206.5	0.2	5e-61	205.7	0.2	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.18	gi|390939114|ref|YP_006402852.1|	-	1.1e-30	105.9	0.1	1.3e-29	102.5	0.0	2.7	3	0	0	3	3	3	1	Elongation	factor	G,	domain	IV
EFG_C	PF00679.24	gi|390939114|ref|YP_006402852.1|	-	3.5e-21	75.1	0.0	1.1e-20	73.5	0.0	1.9	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
EFG_II	PF14492.6	gi|390939114|ref|YP_006402852.1|	-	7.1e-21	74.1	0.1	1.8e-20	72.8	0.1	1.7	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.25	gi|390939114|ref|YP_006402852.1|	-	1.5e-13	50.9	0.0	3.8e-13	49.6	0.0	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|390939114|ref|YP_006402852.1|	-	1.7e-05	24.9	0.1	4.4e-05	23.5	0.1	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
HIGH_NTase1_ass	PF16581.5	gi|390939114|ref|YP_006402852.1|	-	0.015	15.3	0.0	0.039	14.0	0.0	1.7	1	0	0	1	1	1	0	Cytidyltransferase-related	C-terminal	region
SRPRB	PF09439.10	gi|390939114|ref|YP_006402852.1|	-	0.035	13.5	0.0	0.078	12.4	0.0	1.6	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
HisK_N	PF09385.10	gi|390939114|ref|YP_006402852.1|	-	0.052	13.5	0.0	0.16	11.9	0.0	1.8	1	0	0	1	1	1	0	Histidine	kinase	N	terminal
RF3_C	PF16658.5	gi|390939114|ref|YP_006402852.1|	-	0.054	13.3	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Class	II	release	factor	RF3,	C-terminal	domain
Septin	PF00735.18	gi|390939114|ref|YP_006402852.1|	-	0.085	12.1	0.1	0.14	11.4	0.1	1.3	1	0	0	1	1	1	0	Septin
Ras	PF00071.22	gi|390939114|ref|YP_006402852.1|	-	0.091	12.3	0.0	0.18	11.4	0.0	1.4	1	0	0	1	1	1	0	Ras	family
RsgA_GTPase	PF03193.16	gi|390939114|ref|YP_006402852.1|	-	0.13	12.2	0.8	0.43	10.5	0.2	2.0	1	1	1	2	2	2	0	RsgA	GTPase
Prefoldin_2	PF01920.20	gi|390939116|ref|YP_006402854.1|	-	8.6e-19	67.5	14.4	9.6e-19	67.3	14.4	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
Prefoldin	PF02996.17	gi|390939116|ref|YP_006402854.1|	-	0.0015	18.5	7.7	0.3	11.0	0.1	2.2	1	1	1	2	2	2	2	Prefoldin	subunit
FlaC_arch	PF05377.11	gi|390939116|ref|YP_006402854.1|	-	0.0015	18.9	11.9	0.16	12.3	1.3	2.3	2	0	0	2	2	2	2	Flagella	accessory	protein	C	(FlaC)
DUF3584	PF12128.8	gi|390939116|ref|YP_006402854.1|	-	0.0027	15.3	5.2	0.0031	15.1	5.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
CdvA	PF18822.1	gi|390939116|ref|YP_006402854.1|	-	0.035	13.9	10.0	0.066	13.0	0.2	2.2	2	0	0	2	2	2	0	CdvA-like	coiled-coil	domain
DUF4164	PF13747.6	gi|390939116|ref|YP_006402854.1|	-	0.071	13.4	5.9	0.35	11.2	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
FAP206	PF12018.8	gi|390939116|ref|YP_006402854.1|	-	0.088	12.3	3.1	0.086	12.3	2.2	1.4	1	1	1	2	2	2	0	Domain	of	unknown	function
DUF3287	PF11690.8	gi|390939116|ref|YP_006402854.1|	-	0.1	12.3	0.1	0.1	12.3	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3287)
MbeB_N	PF04837.12	gi|390939116|ref|YP_006402854.1|	-	0.11	12.8	1.7	12	6.3	0.3	2.5	2	0	0	2	2	2	0	MbeB-like,	N-term	conserved	region
Nsp1_C	PF05064.13	gi|390939116|ref|YP_006402854.1|	-	0.11	12.3	9.9	0.099	12.4	2.0	2.2	1	1	0	2	2	2	0	Nsp1-like	C-terminal	region
KASH_CCD	PF14662.6	gi|390939116|ref|YP_006402854.1|	-	0.17	11.7	12.9	2.6	7.8	5.2	2.0	1	1	0	1	1	1	0	Coiled-coil	region	of	CCDC155	or	KASH
RtcB	PF01139.17	gi|390939116|ref|YP_006402854.1|	-	0.17	11.0	1.9	0.21	10.7	1.9	1.2	1	0	0	1	1	1	0	tRNA-splicing	ligase	RtcB
Spc7	PF08317.11	gi|390939116|ref|YP_006402854.1|	-	0.17	10.7	9.4	0.22	10.4	9.4	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Snapin_Pallidin	PF14712.6	gi|390939116|ref|YP_006402854.1|	-	0.27	11.7	9.5	0.71	10.3	0.7	2.1	2	0	0	2	2	2	0	Snapin/Pallidin
DUF3450	PF11932.8	gi|390939116|ref|YP_006402854.1|	-	0.27	10.5	9.4	1.9	7.8	2.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Plk4_PB2	PF18409.1	gi|390939116|ref|YP_006402854.1|	-	0.29	11.9	2.1	9.6	6.9	0.1	2.1	1	1	1	2	2	2	0	Polo-like	Kinase	4	Polo	Box	2
TPR_MLP1_2	PF07926.12	gi|390939116|ref|YP_006402854.1|	-	0.49	10.5	10.3	12	6.0	10.3	2.0	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
GreA_GreB_N	PF03449.15	gi|390939116|ref|YP_006402854.1|	-	0.57	10.4	9.1	4.9	7.4	0.4	2.8	2	1	1	3	3	3	0	Transcription	elongation	factor,	N-terminal
FbpA	PF05833.11	gi|390939116|ref|YP_006402854.1|	-	0.58	8.8	9.9	0.1	11.3	0.2	2.0	1	1	1	2	2	2	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
JIP_LZII	PF16471.5	gi|390939116|ref|YP_006402854.1|	-	0.62	10.3	9.4	1.2	9.3	2.5	2.5	2	1	0	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
DASH_Dad3	PF08656.10	gi|390939116|ref|YP_006402854.1|	-	0.72	10.0	6.1	0.96	9.6	1.8	2.4	1	1	0	2	2	2	0	DASH	complex	subunit	Dad3
Glu-tRNAGln	PF02686.15	gi|390939116|ref|YP_006402854.1|	-	0.82	10.0	4.0	0.58	10.5	1.8	1.9	1	1	1	2	2	2	0	Glu-tRNAGln	amidotransferase	C	subunit
TMF_DNA_bd	PF12329.8	gi|390939116|ref|YP_006402854.1|	-	1.2	9.2	11.4	8.1	6.5	6.6	2.2	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DUF4140	PF13600.6	gi|390939116|ref|YP_006402854.1|	-	1.3	9.5	7.2	9.2	6.8	0.6	2.3	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
zf-C4H2	PF10146.9	gi|390939116|ref|YP_006402854.1|	-	1.9	8.7	10.0	1.8	8.8	5.6	2.0	1	1	1	2	2	2	0	Zinc	finger-containing	protein
DUF1664	PF07889.12	gi|390939116|ref|YP_006402854.1|	-	2	8.5	6.9	6.8	6.7	0.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
APG6_N	PF17675.1	gi|390939116|ref|YP_006402854.1|	-	2.2	8.8	13.2	1.2	9.7	1.2	2.0	1	1	1	2	2	2	0	Apg6	coiled-coil	region
ABC_tran_CTD	PF16326.5	gi|390939116|ref|YP_006402854.1|	-	2.7	8.3	9.2	13	6.1	1.3	2.7	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
bZIP_1	PF00170.21	gi|390939116|ref|YP_006402854.1|	-	4.1	7.6	12.8	1.3	9.2	7.0	2.3	2	1	0	2	2	2	0	bZIP	transcription	factor
XhlA	PF10779.9	gi|390939116|ref|YP_006402854.1|	-	6	7.2	7.6	24	5.2	0.4	2.4	2	0	0	2	2	2	0	Haemolysin	XhlA
Fib_alpha	PF08702.10	gi|390939116|ref|YP_006402854.1|	-	7.6	6.7	8.6	11	6.2	8.6	1.2	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
JAKMIP_CC3	PF16034.5	gi|390939116|ref|YP_006402854.1|	-	7.8	6.4	13.2	54	3.6	13.2	1.9	1	1	0	1	1	1	0	JAKMIP	CC3	domain
Pcc1	PF09341.10	gi|390939117|ref|YP_006402855.1|	-	0.00011	22.3	0.0	0.00013	22.1	0.0	1.1	1	0	0	1	1	1	1	Transcription	factor	Pcc1
Brix	PF04427.18	gi|390939118|ref|YP_006402856.1|	-	0.064	13.4	0.0	0.081	13.0	0.0	1.3	1	0	0	1	1	1	0	Brix	domain
Ribosomal_L37ae	PF01780.19	gi|390939119|ref|YP_006402857.1|	-	1e-33	115.2	1.7	1.1e-33	115.1	1.7	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|390939119|ref|YP_006402857.1|	-	6.3e-08	32.5	2.0	9e-08	32.0	2.0	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|390939119|ref|YP_006402857.1|	-	4.2e-06	26.6	0.4	5.3e-06	26.3	0.4	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Lar_restr_allev	PF14354.6	gi|390939119|ref|YP_006402857.1|	-	0.00055	20.2	0.7	0.00086	19.6	0.7	1.3	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.12	gi|390939119|ref|YP_006402857.1|	-	0.0028	17.1	0.0	0.004	16.6	0.0	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
DUF4428	PF14471.6	gi|390939119|ref|YP_006402857.1|	-	0.0092	15.9	0.4	0.013	15.4	0.4	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
zf-ribbon_3	PF13248.6	gi|390939119|ref|YP_006402857.1|	-	0.03	13.7	4.1	2.7	7.5	1.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf_Rg	PF17915.1	gi|390939119|ref|YP_006402857.1|	-	0.07	12.5	0.2	0.11	11.9	0.2	1.2	1	0	0	1	1	1	0	Reverse	gyrase	zinc	finger
Elf1	PF05129.13	gi|390939119|ref|YP_006402857.1|	-	0.11	12.6	0.5	0.23	11.5	0.5	1.6	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-Sec23_Sec24	PF04810.15	gi|390939119|ref|YP_006402857.1|	-	0.11	12.5	1.8	0.99	9.5	0.0	2.1	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
DUF2318	PF10080.9	gi|390939119|ref|YP_006402857.1|	-	0.13	12.4	0.1	0.14	12.3	0.1	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
CpXC	PF14353.6	gi|390939119|ref|YP_006402857.1|	-	0.14	12.2	1.0	1.8	8.6	0.0	2.0	1	1	1	2	2	2	0	CpXC	protein
zinc_ribbon_10	PF10058.9	gi|390939119|ref|YP_006402857.1|	-	0.47	10.2	3.1	4.3	7.1	3.2	2.1	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Prim_Zn_Ribbon	PF08273.12	gi|390939119|ref|YP_006402857.1|	-	1.7	9.0	7.5	4.2	7.7	7.5	1.6	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
zinc_ribbon_2	PF13240.6	gi|390939119|ref|YP_006402857.1|	-	2	8.2	8.7	4.7	7.1	1.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|390939119|ref|YP_006402857.1|	-	2.6	8.0	6.6	9.2	6.2	1.5	2.2	1	1	1	2	2	2	0	Transcription	factor	S-II	(TFIIS)
RNase_PH	PF01138.21	gi|390939120|ref|YP_006402858.1|	-	4.2e-27	95.2	0.0	7.2e-27	94.5	0.0	1.4	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|390939120|ref|YP_006402858.1|	-	3.2e-11	43.1	0.2	6.6e-11	42.1	0.2	1.6	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
RNase_PH	PF01138.21	gi|390939121|ref|YP_006402859.1|	-	1.8e-35	122.3	0.0	2.3e-35	122.0	0.0	1.1	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|390939121|ref|YP_006402859.1|	-	2.9e-14	52.8	0.1	6.5e-14	51.7	0.1	1.6	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	2
KH_6	PF15985.5	gi|390939122|ref|YP_006402860.1|	-	6.8e-06	26.3	0.0	1.2e-05	25.6	0.0	1.4	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|390939122|ref|YP_006402860.1|	-	4.1e-05	23.3	0.0	7.7e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	KH	domain
KH_2	PF07650.17	gi|390939122|ref|YP_006402860.1|	-	0.0031	17.3	0.6	0.0095	15.7	0.2	2.0	2	1	1	3	3	3	1	KH	domain
SBDS	PF01172.18	gi|390939123|ref|YP_006402861.1|	-	1.7e-22	79.3	0.1	2.9e-22	78.5	0.1	1.4	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|390939123|ref|YP_006402861.1|	-	1.4e-19	70.3	1.6	2e-19	69.7	1.6	1.3	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
EFG_C	PF00679.24	gi|390939123|ref|YP_006402861.1|	-	0.014	15.4	0.0	0.036	14.1	0.0	1.6	1	0	0	1	1	1	0	Elongation	factor	G	C-terminus
DUF3095	PF11294.8	gi|390939123|ref|YP_006402861.1|	-	0.096	11.7	0.3	0.12	11.4	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3095)
Proteasome	PF00227.26	gi|390939124|ref|YP_006402862.1|	-	5.8e-55	185.7	0.2	8e-55	185.3	0.2	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|390939124|ref|YP_006402862.1|	-	9.4e-15	54.0	2.6	1.1e-14	53.8	0.4	2.4	2	0	0	2	2	2	1	Proteasome	subunit	A	N-terminal	signature
RNase_P_Rpp14	PF01900.19	gi|390939125|ref|YP_006402863.1|	-	2.2e-12	47.1	0.0	3.8e-12	46.4	0.0	1.3	1	0	0	1	1	1	1	Rpp14/Pop5	family
RNase_P_p30	PF01876.16	gi|390939126|ref|YP_006402864.1|	-	1.2e-05	24.9	0.0	1.6e-05	24.5	0.0	1.2	1	0	0	1	1	1	1	RNase	P	subunit	p30
DUF3862	PF12978.7	gi|390939126|ref|YP_006402864.1|	-	0.17	11.7	0.0	0.22	11.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3862)
RNA_binding	PF01877.17	gi|390939127|ref|YP_006402865.1|	-	1.9e-31	108.8	0.0	2.3e-31	108.5	0.0	1.1	1	0	0	1	1	1	1	RNA	binding
DUF2760	PF10816.8	gi|390939127|ref|YP_006402865.1|	-	0.0058	16.5	0.0	0.0081	16.0	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2760)
Ribosomal_L15e	PF00827.17	gi|390939128|ref|YP_006402866.1|	-	8.3e-82	273.5	5.1	1.1e-81	273.2	5.1	1.2	1	0	0	1	1	1	1	Ribosomal	L15
MMR_HSR1_C	PF08438.10	gi|390939129|ref|YP_006402867.1|	-	4.6e-33	114.1	0.0	1e-32	113.0	0.0	1.6	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|390939129|ref|YP_006402867.1|	-	3.5e-20	72.2	0.0	8.6e-20	70.9	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|390939129|ref|YP_006402867.1|	-	1.7e-12	47.2	0.0	3.7e-12	46.1	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|390939129|ref|YP_006402867.1|	-	2.2e-06	27.3	0.6	6.1e-05	22.6	0.1	2.9	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
YchF-GTPase_C	PF06071.13	gi|390939129|ref|YP_006402867.1|	-	0.0068	16.6	0.0	0.5	10.6	0.0	2.4	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF933)
ABC_tran	PF00005.27	gi|390939129|ref|YP_006402867.1|	-	0.049	14.1	0.1	0.15	12.6	0.0	1.7	2	0	0	2	2	2	0	ABC	transporter
phiKZ_IP	PF12699.7	gi|390939129|ref|YP_006402867.1|	-	0.13	11.4	0.0	0.18	10.9	0.0	1.1	1	0	0	1	1	1	0	phiKZ-like	phage	internal	head	proteins
MMR_HSR1_Xtn	PF16897.5	gi|390939129|ref|YP_006402867.1|	-	0.14	12.2	0.0	0.31	11.1	0.0	1.5	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
DUF2095	PF09868.9	gi|390939130|ref|YP_006402868.1|	-	3.3e-18	65.9	0.2	9.4e-17	61.2	0.2	2.0	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2095)
ORF6C	PF10552.9	gi|390939130|ref|YP_006402868.1|	-	0.021	14.9	0.0	0.04	14.0	0.0	1.4	1	0	0	1	1	1	0	ORF6C	domain
HeH	PF12949.7	gi|390939130|ref|YP_006402868.1|	-	0.036	13.8	0.0	0.62	9.8	0.0	2.3	2	0	0	2	2	2	0	HeH/LEM	domain
NTP_transferase	PF00483.23	gi|390939131|ref|YP_006402869.1|	-	4.4e-29	101.8	0.0	7e-29	101.1	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|390939131|ref|YP_006402869.1|	-	1.3e-15	56.4	3.1	3.7e-06	26.5	0.0	5.6	3	2	2	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|390939131|ref|YP_006402869.1|	-	1.2e-12	48.5	0.0	1.6e-12	48.0	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|390939131|ref|YP_006402869.1|	-	9.3e-06	25.5	0.0	1.4e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.6	gi|390939131|ref|YP_006402869.1|	-	0.0026	17.5	3.5	0.15	11.9	0.1	3.9	3	1	0	3	3	3	1	Hexapeptide	repeat	of	succinyl-transferase
DUF4954	PF16314.5	gi|390939131|ref|YP_006402869.1|	-	0.0044	15.2	0.2	0.0067	14.6	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4954)
Fucokinase	PF07959.12	gi|390939131|ref|YP_006402869.1|	-	0.1	11.5	0.3	10	4.9	0.2	2.1	1	1	1	2	2	2	0	L-fucokinase
Ribosomal_S3Ae	PF01015.18	gi|390939132|ref|YP_006402870.1|	-	1.6e-71	240.1	2.1	1.9e-71	239.8	2.1	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
Post_transc_reg	PF13797.6	gi|390939132|ref|YP_006402870.1|	-	0.093	12.6	3.7	0.59	10.0	0.1	2.7	3	0	0	3	3	3	0	Post-transcriptional	regulator
ScsC_N	PF18312.1	gi|390939132|ref|YP_006402870.1|	-	0.27	11.1	1.0	0.49	10.3	0.2	1.9	2	0	0	2	2	2	0	Copper	resistance	protein	ScsC	N-terminal	domain
Ribosomal_S13_N	PF08069.12	gi|390939135|ref|YP_006402873.1|	-	1.7e-24	85.6	0.1	3.7e-24	84.5	0.1	1.6	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.22	gi|390939135|ref|YP_006402873.1|	-	2.1e-17	63.1	0.3	3e-17	62.6	0.3	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S15
Ham1p_like	PF01725.16	gi|390939136|ref|YP_006402874.1|	-	5.3e-40	137.3	0.0	6e-40	137.2	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
RIO1	PF01163.22	gi|390939137|ref|YP_006402875.1|	-	4.3e-15	55.8	0.0	6.7e-15	55.2	0.0	1.3	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|390939137|ref|YP_006402875.1|	-	2.3e-11	44.1	0.4	0.00012	22.1	0.2	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|390939137|ref|YP_006402875.1|	-	9.4e-09	35.0	0.0	1.2e-08	34.6	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.14	gi|390939137|ref|YP_006402875.1|	-	9.6e-09	34.9	0.0	1.3e-08	34.5	0.0	1.2	1	0	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase_Tyr	PF07714.17	gi|390939137|ref|YP_006402875.1|	-	9.5e-07	28.4	0.0	1.2e-06	28.1	0.0	1.1	1	0	0	1	1	1	1	Protein	tyrosine	kinase
Choline_kinase	PF01633.20	gi|390939137|ref|YP_006402875.1|	-	0.0029	17.2	0.1	0.99	8.9	0.1	2.2	1	1	1	2	2	2	2	Choline/ethanolamine	kinase
EcKinase	PF02958.20	gi|390939137|ref|YP_006402875.1|	-	0.098	11.9	0.1	0.2	11.0	0.1	1.5	1	1	1	2	2	2	0	Ecdysteroid	kinase
Peptidase_M22	PF00814.25	gi|390939138|ref|YP_006402876.1|	-	3.8e-71	240.0	0.0	4.5e-71	239.7	0.0	1.0	1	0	0	1	1	1	1	Glycoprotease	family
BcrAD_BadFG	PF01869.20	gi|390939138|ref|YP_006402876.1|	-	0.13	11.7	0.0	2.6	7.4	0.0	2.3	2	0	0	2	2	2	0	BadF/BadG/BcrA/BcrD	ATPase	family
Carbam_trans_N	PF02543.15	gi|390939138|ref|YP_006402876.1|	-	0.14	11.8	0.0	1.1	8.9	0.0	2.1	1	1	0	1	1	1	0	Carbamoyltransferase	N-terminus
Ribosomal_S27	PF01599.19	gi|390939139|ref|YP_006402877.1|	-	8.1e-17	61.1	1.8	9e-17	61.0	1.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27a
Ribosomal_L37ae	PF01780.19	gi|390939139|ref|YP_006402877.1|	-	0.0062	16.6	0.8	0.007	16.4	0.8	1.1	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
OrfB_Zn_ribbon	PF07282.11	gi|390939139|ref|YP_006402877.1|	-	0.014	15.3	0.4	0.014	15.3	0.4	1.1	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-RRN7	PF11781.8	gi|390939139|ref|YP_006402877.1|	-	0.017	14.8	1.2	0.58	9.9	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Zn_Tnp_IS1595	PF12760.7	gi|390939139|ref|YP_006402877.1|	-	0.021	14.8	3.3	0.03	14.3	3.3	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF1451	PF07295.11	gi|390939139|ref|YP_006402877.1|	-	0.026	14.6	1.0	0.027	14.5	1.0	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
RNA_POL_M_15KD	PF02150.16	gi|390939139|ref|YP_006402877.1|	-	0.044	13.7	1.3	0.13	12.2	1.3	1.7	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
Lar_restr_allev	PF14354.6	gi|390939139|ref|YP_006402877.1|	-	0.048	14.0	2.3	0.062	13.7	2.3	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf_C2H2_10	PF18414.1	gi|390939139|ref|YP_006402877.1|	-	0.059	12.9	4.5	3.1	7.4	0.2	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger
DUF2387	PF09526.10	gi|390939139|ref|YP_006402877.1|	-	0.063	13.4	1.4	0.084	13.0	1.4	1.2	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
zf-ribbon_3	PF13248.6	gi|390939139|ref|YP_006402877.1|	-	0.067	12.6	0.2	0.067	12.6	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|390939139|ref|YP_006402877.1|	-	0.073	12.8	3.6	0.73	9.6	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|390939139|ref|YP_006402877.1|	-	0.13	12.2	3.2	0.66	9.9	3.2	1.9	1	1	0	1	1	1	0	Nudix	N-terminal
zinc_ribbon_13	PF09855.9	gi|390939139|ref|YP_006402877.1|	-	0.15	12.2	2.8	4.2	7.6	0.3	2.4	3	0	0	3	3	3	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf_UBZ	PF18439.1	gi|390939139|ref|YP_006402877.1|	-	0.31	10.7	3.1	0.4	10.3	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn-ribbon_8	PF09723.10	gi|390939139|ref|YP_006402877.1|	-	0.68	10.1	5.2	0.32	11.1	0.5	2.1	1	1	0	2	2	2	0	Zinc	ribbon	domain
ADK_lid	PF05191.14	gi|390939139|ref|YP_006402877.1|	-	1.7	8.7	5.8	22	5.1	5.2	2.3	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
Ribosomal_S24e	PF01282.19	gi|390939140|ref|YP_006402878.1|	-	1.7e-21	75.9	0.1	2.2e-21	75.6	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S24e
DUF359	PF04019.12	gi|390939141|ref|YP_006402879.1|	-	7.7e-14	51.4	0.1	1.5e-13	50.5	0.1	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
Spt4	PF06093.13	gi|390939142|ref|YP_006402880.1|	-	2.2e-14	53.3	0.1	2.5e-14	53.1	0.1	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
UPF0547	PF10571.9	gi|390939142|ref|YP_006402880.1|	-	0.0019	18.2	3.3	0.0029	17.7	3.3	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.6	gi|390939142|ref|YP_006402880.1|	-	0.0024	17.5	1.4	0.0035	17.0	1.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|390939142|ref|YP_006402880.1|	-	0.0028	17.6	1.9	0.0039	17.2	1.9	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-P11	PF03854.14	gi|390939142|ref|YP_006402880.1|	-	0.0081	15.8	0.3	0.012	15.2	0.3	1.2	1	0	0	1	1	1	1	P-11	zinc	finger
TackOD1	PF18551.1	gi|390939142|ref|YP_006402880.1|	-	0.0098	15.6	0.6	0.013	15.2	0.6	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
zinc_ribbon_15	PF17032.5	gi|390939142|ref|YP_006402880.1|	-	0.013	16.3	1.4	0.016	15.9	1.4	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
DUF35_N	PF12172.8	gi|390939142|ref|YP_006402880.1|	-	0.013	15.4	2.9	0.018	14.9	2.9	1.2	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.19	gi|390939142|ref|YP_006402880.1|	-	0.017	15.1	0.2	0.023	14.7	0.2	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C4H2	PF10146.9	gi|390939142|ref|YP_006402880.1|	-	0.021	15.1	0.8	0.025	14.9	0.8	1.1	1	0	0	1	1	1	0	Zinc	finger-containing	protein
zf-RRN7	PF11781.8	gi|390939142|ref|YP_006402880.1|	-	0.029	14.0	0.5	0.029	14.0	0.5	2.0	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DUF2072	PF09845.9	gi|390939142|ref|YP_006402880.1|	-	0.2	11.9	1.9	0.71	10.1	0.8	1.9	1	1	1	2	2	2	0	Zn-ribbon	containing	protein
Prim_Zn_Ribbon	PF08273.12	gi|390939142|ref|YP_006402880.1|	-	0.3	11.4	0.5	0.3	11.4	0.5	1.9	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
Zn-ribbon_8	PF09723.10	gi|390939142|ref|YP_006402880.1|	-	1.1	9.4	4.5	6.8	6.9	4.4	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
SHS2_Rpb7-N	PF03876.17	gi|390939143|ref|YP_006402881.1|	-	3e-16	59.5	0.1	1.1e-15	57.7	0.0	1.9	2	0	0	2	2	2	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1	PF00575.23	gi|390939143|ref|YP_006402881.1|	-	5.3e-07	29.9	0.7	5.3e-07	29.9	0.7	2.4	2	2	1	3	3	3	1	S1	RNA	binding	domain
RNA_pol_Rbc25	PF08292.12	gi|390939143|ref|YP_006402881.1|	-	0.019	15.2	0.0	0.03	14.6	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	Rpc25
PIN_9	PF18477.1	gi|390939144|ref|YP_006402882.1|	-	5e-25	88.1	0.4	5.8e-25	87.9	0.4	1.0	1	0	0	1	1	1	1	PIN	like	domain
Fcf1	PF04900.12	gi|390939144|ref|YP_006402882.1|	-	0.0003	21.1	0.0	0.00038	20.8	0.0	1.3	1	0	0	1	1	1	1	Fcf1
DUF5615	PF18480.1	gi|390939144|ref|YP_006402882.1|	-	0.00032	20.4	0.0	0.00054	19.7	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
PIN	PF01850.21	gi|390939144|ref|YP_006402882.1|	-	0.0013	19.2	0.4	0.0038	17.7	0.4	1.7	1	1	0	1	1	1	1	PIN	domain
RNase_Zc3h12a	PF11977.8	gi|390939144|ref|YP_006402882.1|	-	0.063	13.0	0.0	0.083	12.7	0.0	1.2	1	0	0	1	1	1	0	Zc3h12a-like	Ribonuclease	NYN	domain
AAA_18	PF13238.6	gi|390939144|ref|YP_006402882.1|	-	0.1	13.2	0.3	0.13	12.9	0.3	1.3	1	1	0	1	1	1	0	AAA	domain
GTP_EFTU	PF00009.27	gi|390939145|ref|YP_006402883.1|	-	1.9e-31	109.1	0.1	1.4e-30	106.3	0.1	2.0	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.11	gi|390939145|ref|YP_006402883.1|	-	1.7e-27	95.5	2.1	2e-27	95.2	0.6	1.9	2	0	0	2	2	2	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.25	gi|390939145|ref|YP_006402883.1|	-	7.3e-07	29.5	1.3	2.3e-06	27.9	1.0	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
PduV-EutP	PF10662.9	gi|390939145|ref|YP_006402883.1|	-	3.3e-05	23.7	0.6	0.089	12.5	0.1	2.3	2	0	0	2	2	2	2	Ethanolamine	utilisation	-	propanediol	utilisation
RsgA_GTPase	PF03193.16	gi|390939145|ref|YP_006402883.1|	-	0.00034	20.6	0.5	0.0038	17.1	0.1	2.3	2	0	0	2	2	2	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|390939145|ref|YP_006402883.1|	-	0.00035	20.6	0.0	0.00075	19.6	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
MMR_HSR1_Xtn	PF16897.5	gi|390939145|ref|YP_006402883.1|	-	0.014	15.4	0.1	0.03	14.3	0.1	1.5	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
FeoB_N	PF02421.18	gi|390939145|ref|YP_006402883.1|	-	0.018	14.6	0.5	2.7	7.5	0.0	2.5	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B
MeaB	PF03308.16	gi|390939145|ref|YP_006402883.1|	-	0.094	11.7	1.1	0.59	9.1	0.1	2.1	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Ribosomal_S6e	PF01092.19	gi|390939146|ref|YP_006402884.1|	-	1.9e-32	111.9	0.0	4e-32	110.8	0.0	1.6	1	0	0	1	1	1	1	Ribosomal	protein	S6e
GTP_EFTU_D4	PF14578.6	gi|390939147|ref|YP_006402885.1|	-	6.2e-37	125.4	2.0	1.6e-36	124.1	2.0	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
GTP_EFTU	PF00009.27	gi|390939147|ref|YP_006402885.1|	-	7e-34	117.1	0.0	1.5e-33	116.0	0.0	1.5	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.8	gi|390939147|ref|YP_006402885.1|	-	9.1e-21	74.0	0.1	2.2e-20	72.7	0.1	1.7	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.25	gi|390939147|ref|YP_006402885.1|	-	1.1e-10	41.7	0.5	1e-09	38.7	0.0	2.7	2	1	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|390939147|ref|YP_006402885.1|	-	3.3e-07	30.4	0.0	1.1e-06	28.7	0.0	2.0	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
ATP_bind_1	PF03029.17	gi|390939147|ref|YP_006402885.1|	-	0.00033	20.5	0.0	0.002	18.0	0.0	2.3	2	1	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
Roc	PF08477.13	gi|390939147|ref|YP_006402885.1|	-	0.0015	18.8	0.0	0.019	15.2	0.0	2.7	3	1	0	3	3	3	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
RsgA_GTPase	PF03193.16	gi|390939147|ref|YP_006402885.1|	-	0.0027	17.6	0.3	3.3	7.6	0.0	3.2	2	1	1	3	3	3	2	RsgA	GTPase
Arf	PF00025.21	gi|390939147|ref|YP_006402885.1|	-	0.0074	15.8	0.1	4.5	6.7	0.0	3.1	2	1	0	2	2	2	1	ADP-ribosylation	factor	family
Dynamin_N	PF00350.23	gi|390939147|ref|YP_006402885.1|	-	0.011	15.8	0.0	0.1	12.6	0.0	2.5	3	0	0	3	3	3	0	Dynamin	family
AAA_22	PF13401.6	gi|390939147|ref|YP_006402885.1|	-	0.015	15.5	0.0	0.046	14.0	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
Ras	PF00071.22	gi|390939147|ref|YP_006402885.1|	-	0.043	13.4	0.0	0.27	10.8	0.0	2.3	1	1	0	1	1	1	0	Ras	family
Ribosomal_L24e	PF01246.20	gi|390939148|ref|YP_006402886.1|	-	8.1e-22	77.2	1.5	8.7e-22	77.1	1.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.14	gi|390939148|ref|YP_006402886.1|	-	5.3e-05	23.1	1.5	5.3e-05	23.1	1.5	1.4	2	0	0	2	2	2	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
SOBP	PF15279.6	gi|390939148|ref|YP_006402886.1|	-	0.0056	17.3	0.4	0.0068	17.1	0.4	1.1	1	0	0	1	1	1	1	Sine	oculis-binding	protein
YHS	PF04945.13	gi|390939148|ref|YP_006402886.1|	-	0.013	15.6	0.1	0.019	15.1	0.1	1.3	1	0	0	1	1	1	0	YHS	domain
DUF2116	PF09889.9	gi|390939148|ref|YP_006402886.1|	-	0.052	13.5	1.2	0.57	10.2	0.2	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
NosL	PF05573.12	gi|390939148|ref|YP_006402886.1|	-	0.15	12.4	0.1	0.16	12.3	0.1	1.1	1	0	0	1	1	1	0	NosL
Ribosomal_S28e	PF01200.18	gi|390939149|ref|YP_006402887.1|	-	4.9e-30	103.3	4.0	6e-30	103.0	4.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L7Ae	PF01248.26	gi|390939150|ref|YP_006402888.1|	-	2e-31	107.6	0.5	2.5e-31	107.3	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|390939150|ref|YP_006402888.1|	-	0.00011	22.0	0.1	0.00021	21.1	0.1	1.5	1	1	0	1	1	1	1	PELOTA	RNA	binding	domain
RNase_P_pop3	PF08228.11	gi|390939150|ref|YP_006402888.1|	-	0.007	16.4	0.0	0.0083	16.2	0.0	1.1	1	0	0	1	1	1	1	RNase	P	subunit	Pop3
tRNA-synt_1c	PF00749.21	gi|390939151|ref|YP_006402889.1|	-	6.7e-75	251.9	0.0	1e-74	251.3	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|390939151|ref|YP_006402889.1|	-	1.5e-20	73.8	0.0	3.1e-20	72.8	0.0	1.6	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
DUF2118	PF09891.9	gi|390939152|ref|YP_006402890.1|	-	1.6e-15	57.4	0.0	1.8e-15	57.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
FMN_dh	PF01070.18	gi|390939153|ref|YP_006402891.1|	-	2.7e-15	56.3	0.4	8.2e-14	51.4	0.4	2.6	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
Memo	PF01875.17	gi|390939154|ref|YP_006402892.1|	-	7.5e-79	264.7	0.0	8.6e-79	264.5	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
MccV	PF17508.2	gi|390939154|ref|YP_006402892.1|	-	0.18	12.3	0.0	0.38	11.3	0.0	1.5	1	0	0	1	1	1	0	Microcin	V	bacteriocin
Ribosomal_S2	PF00318.20	gi|390939155|ref|YP_006402893.1|	-	2.1e-25	89.2	0.0	1.7e-15	56.9	0.1	2.0	1	1	1	2	2	2	2	Ribosomal	protein	S2
RNA_pol_N	PF01194.17	gi|390939156|ref|YP_006402894.1|	-	1.6e-29	102.0	0.9	1.7e-29	101.8	0.9	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Chordopox_RPO7	PF05864.12	gi|390939156|ref|YP_006402894.1|	-	0.0022	18.2	0.2	0.003	17.8	0.2	1.3	1	0	0	1	1	1	1	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
FYRN	PF05964.14	gi|390939156|ref|YP_006402894.1|	-	0.015	15.1	1.4	0.023	14.5	1.4	1.3	1	0	0	1	1	1	0	F/Y-rich	N-terminus
Ribosomal_S9	PF00380.19	gi|390939157|ref|YP_006402895.1|	-	5.6e-34	117.3	0.0	6.5e-34	117.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.18	gi|390939158|ref|YP_006402896.1|	-	1.7e-12	47.7	0.7	2.9e-10	40.5	0.7	2.1	1	1	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_L18	PF17135.4	gi|390939159|ref|YP_006402897.1|	-	3e-08	33.3	0.2	6.8e-08	32.1	0.1	1.6	1	1	1	2	2	2	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L27A	PF00828.19	gi|390939159|ref|YP_006402897.1|	-	8.7e-08	32.9	0.1	1e-07	32.7	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Carla_C4	PF01623.17	gi|390939159|ref|YP_006402897.1|	-	0.023	14.6	0.1	0.036	14.0	0.1	1.3	1	0	0	1	1	1	0	Carlavirus	putative	nucleic	acid	binding	protein
RNA_pol_A_bac	PF01000.26	gi|390939160|ref|YP_006402898.1|	-	6.6e-30	103.8	0.0	1.9e-29	102.3	0.0	1.8	2	0	0	2	2	2	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|390939160|ref|YP_006402898.1|	-	5.5e-14	51.3	0.0	7.1e-14	51.0	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Fer4_7	PF12838.7	gi|390939160|ref|YP_006402898.1|	-	5.5e-07	30.1	11.2	5.7e-06	26.8	12.2	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|390939160|ref|YP_006402898.1|	-	8.1e-07	28.6	11.6	0.00012	21.8	1.6	3.0	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|390939160|ref|YP_006402898.1|	-	9.3e-07	28.9	11.6	1.7e-06	28.0	11.6	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|390939160|ref|YP_006402898.1|	-	1.4e-06	29.1	6.7	0.0077	17.1	0.3	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.7	gi|390939160|ref|YP_006402898.1|	-	2e-05	24.4	12.4	0.0048	16.9	1.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|390939160|ref|YP_006402898.1|	-	2.5e-05	24.3	12.2	6.6e-05	22.9	12.3	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|390939160|ref|YP_006402898.1|	-	0.00014	21.9	11.5	0.00039	20.5	11.5	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|390939160|ref|YP_006402898.1|	-	0.00045	20.2	11.9	0.0065	16.5	2.6	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|390939160|ref|YP_006402898.1|	-	0.00047	20.9	16.1	0.064	14.2	4.2	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|390939160|ref|YP_006402898.1|	-	0.0074	16.7	12.0	0.51	11.0	2.5	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|390939160|ref|YP_006402898.1|	-	0.043	14.4	12.5	7	7.3	10.8	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|390939160|ref|YP_006402898.1|	-	0.076	13.5	13.5	7.8	7.0	13.8	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Linocin_M18	PF04454.12	gi|390939160|ref|YP_006402898.1|	-	0.15	11.4	0.0	6.8	5.9	0.0	2.2	2	0	0	2	2	2	0	Encapsulating	protein	for	peroxidase
Fer4_18	PF13746.6	gi|390939160|ref|YP_006402898.1|	-	0.19	12.0	9.7	0.71	10.1	1.7	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Ribosomal_S11	PF00411.19	gi|390939161|ref|YP_006402899.1|	-	1.3e-47	160.8	3.5	1.6e-47	160.5	3.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S11
S4	PF01479.25	gi|390939162|ref|YP_006402900.1|	-	9.4e-15	54.1	0.4	9.4e-15	54.1	0.4	2.0	2	0	0	2	2	2	1	S4	domain
Ribosomal_S4	PF00163.19	gi|390939162|ref|YP_006402900.1|	-	8.4e-05	23.4	0.4	0.00015	22.6	0.2	1.5	1	1	0	1	1	1	1	Ribosomal	protein	S4/S9	N-terminal	domain
TyrRSs_C	PF16714.5	gi|390939162|ref|YP_006402900.1|	-	0.013	15.3	0.0	0.018	14.8	0.0	1.2	1	0	0	1	1	1	0	Tyrosyl-tRNA	synthetase	C-terminal	domain
YlaH	PF14036.6	gi|390939162|ref|YP_006402900.1|	-	0.16	12.3	0.0	0.53	10.6	0.0	1.7	2	0	0	2	2	2	0	YlaH-like	protein
Ribosomal_S13	PF00416.22	gi|390939163|ref|YP_006402901.1|	-	1.4e-38	132.1	0.0	1.8e-38	131.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
Ribosomal_S10	PF00338.22	gi|390939164|ref|YP_006402902.1|	-	5e-25	87.6	0.3	5.9e-25	87.3	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
PriA_C	PF18074.1	gi|390939164|ref|YP_006402902.1|	-	0.009	16.8	0.1	0.021	15.7	0.0	1.5	2	0	0	2	2	2	1	Primosomal	protein	N	C-terminal	domain
RIG-I_C	PF18119.1	gi|390939164|ref|YP_006402902.1|	-	0.13	12.3	0.1	0.15	12.1	0.1	1.1	1	0	0	1	1	1	0	RIG-I	receptor	C-terminal	domain
GTP_EFTU	PF00009.27	gi|390939165|ref|YP_006402903.1|	-	3.1e-54	183.5	0.0	4.9e-54	182.8	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|390939165|ref|YP_006402903.1|	-	3.4e-37	127.2	0.7	1.3e-36	125.3	0.1	2.2	3	0	0	3	3	3	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|390939165|ref|YP_006402903.1|	-	6.8e-15	55.2	2.4	1.5e-14	54.1	2.4	1.6	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|390939165|ref|YP_006402903.1|	-	6.1e-05	23.1	0.0	0.00045	20.3	0.0	2.2	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU_D4	PF14578.6	gi|390939165|ref|YP_006402903.1|	-	0.00044	20.1	2.6	0.00044	20.1	2.6	2.4	3	0	0	3	3	3	1	Elongation	factor	Tu	domain	4
Dynamin_N	PF00350.23	gi|390939165|ref|YP_006402903.1|	-	0.073	13.1	0.0	11	6.0	0.0	2.4	1	1	1	2	2	2	0	Dynamin	family
PduV-EutP	PF10662.9	gi|390939165|ref|YP_006402903.1|	-	0.11	12.3	0.1	5.6	6.7	0.0	2.7	3	0	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
SRPRB	PF09439.10	gi|390939165|ref|YP_006402903.1|	-	0.12	11.8	0.1	0.4	10.1	0.0	1.8	1	1	1	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
SepF	PF04472.12	gi|390939165|ref|YP_006402903.1|	-	0.14	12.5	0.1	0.56	10.5	0.0	2.1	2	0	0	2	2	2	0	Cell	division	protein	SepF
Ribosomal_S7	PF00177.21	gi|390939166|ref|YP_006402904.1|	-	2.3e-41	140.9	0.3	2.9e-41	140.6	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
Ribosom_S12_S23	PF00164.25	gi|390939167|ref|YP_006402905.1|	-	4.4e-45	152.0	0.2	5.5e-45	151.6	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
KH_2	PF07650.17	gi|390939168|ref|YP_006402906.1|	-	2.9e-14	52.7	1.9	3.2e-08	33.3	0.1	2.3	1	1	1	2	2	2	2	KH	domain
KH_5	PF13184.6	gi|390939168|ref|YP_006402906.1|	-	1.9e-13	50.3	0.9	1.4e-11	44.3	0.1	2.3	2	0	0	2	2	2	2	NusA-like	KH	domain
KH_4	PF13083.6	gi|390939168|ref|YP_006402906.1|	-	4.7e-09	36.0	0.1	0.0018	18.1	0.0	2.3	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.29	gi|390939168|ref|YP_006402906.1|	-	0.00019	21.2	0.4	0.11	12.4	0.1	2.6	2	0	0	2	2	2	2	KH	domain
Ribosomal_L7Ae	PF01248.26	gi|390939169|ref|YP_006402907.1|	-	2.2e-17	62.6	0.0	2.6e-17	62.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PRA-CH	PF01502.18	gi|390939169|ref|YP_006402907.1|	-	0.24	11.2	0.0	0.31	10.9	0.0	1.2	1	0	0	1	1	1	0	Phosphoribosyl-AMP	cyclohydrolase
RNA_pol_Rpb1_5	PF04998.17	gi|390939170|ref|YP_006402908.1|	-	2.4e-56	191.1	0.6	3.1e-56	190.7	0.6	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
NAC	PF01849.18	gi|390939170|ref|YP_006402908.1|	-	0.06	13.3	0.4	0.2	11.6	0.1	2.1	2	0	0	2	2	2	0	NAC	domain
Poly_export	PF02563.16	gi|390939170|ref|YP_006402908.1|	-	0.33	11.2	2.4	0.63	10.3	0.1	2.7	3	0	0	3	3	3	0	Polysaccharide	biosynthesis/export	protein
KGG	PF10685.9	gi|390939170|ref|YP_006402908.1|	-	0.65	10.4	3.9	4.3	7.7	1.6	2.5	2	0	0	2	2	2	0	Stress-induced	bacterial	acidophilic	repeat	motif
RNA_pol_Rpb1_1	PF04997.12	gi|390939171|ref|YP_006402909.1|	-	6.9e-99	331.1	0.0	9.1e-99	330.7	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.20	gi|390939171|ref|YP_006402909.1|	-	6.8e-75	250.9	0.0	1.4e-74	249.8	0.0	1.6	2	0	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_3	PF04983.18	gi|390939171|ref|YP_006402909.1|	-	6.3e-38	130.2	0.0	1.5e-37	129.0	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_4	PF05000.17	gi|390939171|ref|YP_006402909.1|	-	2.1e-26	92.0	0.0	4.2e-26	91.0	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_5	PF04998.17	gi|390939171|ref|YP_006402909.1|	-	6.3e-26	91.4	0.0	1.1e-25	90.6	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
DZR	PF12773.7	gi|390939171|ref|YP_006402909.1|	-	0.12	12.4	1.1	12	6.1	0.3	2.3	2	0	0	2	2	2	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|390939171|ref|YP_006402909.1|	-	0.13	12.4	2.2	5.4	7.2	0.0	3.1	3	0	0	3	3	3	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|390939171|ref|YP_006402909.1|	-	0.66	9.5	8.4	1.5	8.3	0.2	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-RING_7	PF02591.15	gi|390939171|ref|YP_006402909.1|	-	3.4	7.9	5.5	45	4.3	0.1	3.5	3	0	0	3	3	3	0	C4-type	zinc	ribbon	domain
zf-ISL3	PF14690.6	gi|390939171|ref|YP_006402909.1|	-	5.7	7.7	7.7	6	7.6	0.2	3.3	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-FPG_IleRS	PF06827.14	gi|390939171|ref|YP_006402909.1|	-	6.9	6.6	6.9	15	5.5	0.3	3.3	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
Zn_Tnp_IS1595	PF12760.7	gi|390939171|ref|YP_006402909.1|	-	8.9	6.4	7.8	4.1	7.5	0.1	2.9	3	0	0	3	3	3	0	Transposase	zinc-ribbon	domain
RNA_pol_Rpb2_6	PF00562.28	gi|390939172|ref|YP_006402910.1|	-	3.8e-131	437.7	0.0	5.1e-131	437.3	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_1	PF04563.15	gi|390939172|ref|YP_006402910.1|	-	4.1e-46	157.1	0.2	5.8e-46	156.6	0.2	1.2	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_7	PF04560.20	gi|390939172|ref|YP_006402910.1|	-	4.2e-28	97.6	0.0	8.7e-28	96.6	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_3	PF04565.16	gi|390939172|ref|YP_006402910.1|	-	1.8e-26	92.1	0.0	4.8e-26	90.7	0.0	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_2	PF04561.14	gi|390939172|ref|YP_006402910.1|	-	2.1e-25	89.5	1.2	1.5e-24	86.7	0.3	2.6	2	1	0	2	2	2	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_4	PF04566.13	gi|390939172|ref|YP_006402910.1|	-	2.2e-22	79.1	0.9	6.6e-22	77.6	0.9	1.9	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|390939172|ref|YP_006402910.1|	-	1.8e-09	38.0	0.0	4.9e-09	36.6	0.0	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
DUF2067	PF09840.9	gi|390939172|ref|YP_006402910.1|	-	0.02	14.5	0.9	2.9	7.4	0.5	2.6	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
RNA_pol_Rpb5_C	PF01191.19	gi|390939173|ref|YP_006402911.1|	-	4.5e-34	116.1	0.0	5.1e-34	116.0	0.0	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_fermentans_DSM_16532_uid75119/NC_018001.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_fermentans_DSM_16532_uid75119/NC_018001.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_fermentans_DSM_16532_uid75119/NC_018001.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Desulfurococcus_fermentans_DSM_16532_uid75119/NC_018001.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 10:54:03 2019
# [ok]