# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- PQQ PF01011.16 gi|549454645|ref|YP_008603404.1| - 0.00035 19.9 0.2 0.21 11.2 0.0 3.6 3 0 0 3 3 3 2 PQQ enzyme repeat PQQ_2 PF13360.1 gi|549454645|ref|YP_008603404.1| - 0.0013 18.2 0.7 0.063 12.7 0.2 2.8 3 1 0 3 3 3 1 PQQ-like domain IncA PF04156.9 gi|549454646|ref|YP_008603405.1| - 0.0023 17.5 0.1 0.0032 17.0 0.0 1.1 1 0 0 1 1 1 1 IncA protein HMA PF00403.21 gi|549454647|ref|YP_008603406.1| - 1.3e-11 44.4 0.0 1.6e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Heavy-metal-associated domain PMSR PF01625.16 gi|549454647|ref|YP_008603406.1| - 0.048 13.5 0.1 0.17 11.7 0.1 1.7 1 1 1 2 2 2 0 Peptide methionine sulfoxide reductase AA_permease_2 PF13520.1 gi|549454649|ref|YP_008603408.1| - 3e-32 111.6 37.3 3.7e-32 111.4 25.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|549454649|ref|YP_008603408.1| - 5.1e-24 84.4 37.0 6.9e-24 84.0 25.7 1.1 1 0 0 1 1 1 1 Amino acid permease NTP_transf_2 PF01909.18 gi|549454649|ref|YP_008603408.1| - 6.1e-11 42.5 0.1 4.2e-10 39.8 0.0 2.3 2 0 0 2 2 2 1 Nucleotidyltransferase domain Spore_permease PF03845.8 gi|549454649|ref|YP_008603408.1| - 3.7e-07 29.1 10.5 6.7e-07 28.2 7.3 1.4 1 0 0 1 1 1 1 Spore germination protein DNA_pol_B_palm PF14792.1 gi|549454649|ref|YP_008603408.1| - 0.00016 21.6 0.0 0.00033 20.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase beta palm Adenyl_cycl_N PF12633.2 gi|549454649|ref|YP_008603408.1| - 0.063 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain DeoC PF01791.4 gi|549454650|ref|YP_008603409.1| - 2e-36 125.5 0.0 2.3e-36 125.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.9 gi|549454650|ref|YP_008603409.1| - 4.3e-05 22.7 2.0 0.00021 20.4 0.6 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Peptidase_C26 PF07722.8 gi|549454650|ref|YP_008603409.1| - 0.027 13.9 0.1 0.076 12.4 0.0 1.7 2 0 0 2 2 2 0 Peptidase C26 PfkB PF00294.19 gi|549454651|ref|YP_008603410.1| - 3.2e-62 210.3 0.1 3.9e-62 210.1 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|549454651|ref|YP_008603410.1| - 5.7e-08 32.2 0.0 7.9e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiF PF00899.16 gi|549454651|ref|YP_008603410.1| - 0.061 13.1 1.8 0.56 10.0 1.1 2.2 2 0 0 2 2 2 0 ThiF family ILVD_EDD PF00920.16 gi|549454652|ref|YP_008603411.1| - 4.1e-201 668.9 0.0 4.6e-201 668.7 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family DUF1361 PF07099.6 gi|549454653|ref|YP_008603412.1| - 0.0029 17.4 0.9 0.0059 16.4 0.6 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1361) FGGY_N PF00370.16 gi|549454654|ref|YP_008603413.1| - 6e-43 146.9 0.0 1.3e-42 145.8 0.0 1.5 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|549454654|ref|YP_008603413.1| - 5.1e-28 98.0 0.3 9.7e-28 97.1 0.2 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|549454654|ref|YP_008603413.1| - 0.002 17.4 0.1 0.3 10.3 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family DUF4445 PF14574.1 gi|549454654|ref|YP_008603413.1| - 0.062 11.5 0.3 0.15 10.2 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4445) Pyridoxal_deC PF00282.14 gi|549454655|ref|YP_008603414.1| - 6.2e-27 93.9 0.0 9.7e-27 93.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|549454655|ref|YP_008603414.1| - 2e-07 30.1 0.0 1e-06 27.7 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|549454655|ref|YP_008603414.1| - 0.0015 17.6 0.0 0.0026 16.8 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Acid_PPase PF12689.2 gi|549454656|ref|YP_008603415.1| - 0.00013 21.6 0.0 0.00027 20.6 0.0 1.5 1 1 0 1 1 1 1 Acid Phosphatase NIF PF03031.13 gi|549454656|ref|YP_008603415.1| - 0.11 12.1 0.2 0.23 11.0 0.1 1.7 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase Glyco_trans_4_4 PF13579.1 gi|549454656|ref|YP_008603415.1| - 0.23 11.5 2.0 0.49 10.5 1.4 1.3 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain bPH_5 PF10882.3 gi|549454657|ref|YP_008603416.1| - 0.083 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain DUF4131 PF13567.1 gi|549454657|ref|YP_008603416.1| - 1 8.7 5.8 1.5 8.2 4.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Abi PF02517.11 gi|549454658|ref|YP_008603417.1| - 5.7e-12 45.6 10.4 1.7e-11 44.1 7.2 2.0 1 1 0 1 1 1 1 CAAX protease self-immunity AhpC-TSA PF00578.16 gi|549454659|ref|YP_008603418.1| - 8e-12 44.9 0.0 1.1e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|549454659|ref|YP_008603418.1| - 1.7e-09 37.3 0.0 2.8e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|549454659|ref|YP_008603418.1| - 0.0085 16.1 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like GSHPx PF00255.14 gi|549454659|ref|YP_008603418.1| - 0.031 13.6 0.0 0.043 13.1 0.0 1.3 1 0 0 1 1 1 0 Glutathione peroxidase SCO1-SenC PF02630.9 gi|549454659|ref|YP_008603418.1| - 0.051 13.1 0.0 0.062 12.9 0.0 1.1 1 0 0 1 1 1 0 SCO1/SenC Gram_pos_anchor PF00746.16 gi|549454659|ref|YP_008603418.1| - 1.9 8.3 4.8 3.2 7.6 3.3 1.3 1 0 0 1 1 1 0 Gram positive anchor DsbD PF02683.10 gi|549454660|ref|YP_008603419.1| - 5.4e-15 55.5 19.7 6.5e-15 55.3 13.6 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|549454660|ref|YP_008603419.1| - 0.065 12.9 24.9 0.098 12.3 17.2 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region NADH-u_ox-rdase PF10785.4 gi|549454660|ref|YP_008603419.1| - 7 6.9 10.4 0.49 10.6 2.9 2.3 2 1 0 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Thioredoxin PF00085.15 gi|549454661|ref|YP_008603420.1| - 1.4e-15 56.7 0.2 1.5e-15 56.6 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|549454661|ref|YP_008603420.1| - 3.7e-06 27.1 0.7 0.00034 20.7 0.5 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|549454661|ref|YP_008603420.1| - 1.6e-05 24.5 0.2 2.5e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.1 gi|549454661|ref|YP_008603420.1| - 0.0021 18.1 0.0 0.0036 17.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Cu-oxidase_3 PF07732.10 gi|549454662|ref|YP_008603421.1| - 1.7e-08 34.2 0.1 3.4e-08 33.2 0.1 1.5 1 1 0 1 1 1 1 Multicopper oxidase SoxE PF06525.6 gi|549454662|ref|YP_008603421.1| - 0.00028 20.2 0.2 0.00088 18.5 0.1 1.8 1 1 0 1 1 1 1 Sulfocyanin (SoxE) Cu-oxidase_2 PF07731.9 gi|549454662|ref|YP_008603421.1| - 0.0016 17.9 0.0 0.045 13.2 0.0 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|549454662|ref|YP_008603421.1| - 0.0018 18.1 0.0 0.0052 16.6 0.0 1.8 1 1 0 1 1 1 1 Cupredoxin-like domain Cu-oxidase PF00394.17 gi|549454662|ref|YP_008603421.1| - 0.014 15.2 0.0 3.9 7.3 0.0 2.1 2 0 0 2 2 2 0 Multicopper oxidase DUF808 PF05661.7 gi|549454663|ref|YP_008603422.1| - 0.00029 19.7 0.1 0.00029 19.7 0.1 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF808) DUF2207 PF09972.4 gi|549454663|ref|YP_008603422.1| - 0.52 8.8 5.7 0.6 8.6 4.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PalH PF08733.5 gi|549454663|ref|YP_008603422.1| - 8 5.1 7.5 9.4 4.9 5.2 1.1 1 0 0 1 1 1 0 PalH/RIM21 COX1 PF00115.15 gi|549454664|ref|YP_008603423.1| - 1.8e-139 465.2 56.5 1.8e-139 465.2 39.2 2.4 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|549454664|ref|YP_008603423.1| - 5.1e-11 42.5 11.7 2.4e-10 40.3 8.1 2.2 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III COX2 PF00116.15 gi|549454665|ref|YP_008603424.1| - 7.2e-22 77.4 0.1 6e-20 71.2 0.0 2.2 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|549454665|ref|YP_008603424.1| - 0.00022 21.0 0.0 0.00044 20.1 0.0 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain DUF3317 PF11779.3 gi|549454665|ref|YP_008603424.1| - 0.48 9.9 5.4 0.15 11.5 1.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3317) Cupredoxin_1 PF13473.1 gi|549454666|ref|YP_008603425.1| - 0.0056 16.5 0.0 0.39 10.6 0.0 2.3 1 1 1 2 2 2 2 Cupredoxin-like domain Cu-oxidase_2 PF07731.9 gi|549454666|ref|YP_008603425.1| - 0.041 13.3 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 Multicopper oxidase PEPCK_ATP PF01293.15 gi|549454667|ref|YP_008603426.1| - 2.8e-72 243.7 0.0 1.8e-71 241.0 0.0 1.8 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_33 PF13671.1 gi|549454667|ref|YP_008603426.1| - 0.014 15.2 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain SBP_bac_1 PF01547.20 gi|549454668|ref|YP_008603427.1| - 1.3e-33 117.0 7.2 1.8e-33 116.5 5.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|549454668|ref|YP_008603427.1| - 1.6e-24 87.1 1.9 2.1e-24 86.7 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DivIC PF04977.10 gi|549454668|ref|YP_008603427.1| - 0.0057 16.1 0.4 0.012 15.0 0.3 1.5 1 0 0 1 1 1 1 Septum formation initiator UPF0118 PF01594.11 gi|549454668|ref|YP_008603427.1| - 0.0067 15.4 0.2 0.0096 14.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF4363 PF14276.1 gi|549454668|ref|YP_008603427.1| - 0.011 15.3 0.6 0.022 14.4 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) IncA PF04156.9 gi|549454668|ref|YP_008603427.1| - 0.013 15.0 1.0 0.022 14.3 0.7 1.3 1 0 0 1 1 1 0 IncA protein Prefoldin PF02996.12 gi|549454668|ref|YP_008603427.1| - 0.016 14.8 0.4 0.057 13.0 0.4 1.8 2 0 0 2 2 2 0 Prefoldin subunit DUF1664 PF07889.7 gi|549454668|ref|YP_008603427.1| - 0.033 13.9 0.4 0.064 13.0 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) COG2 PF06148.6 gi|549454668|ref|YP_008603427.1| - 0.04 13.7 0.6 0.073 12.9 0.4 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_II PF06009.7 gi|549454668|ref|YP_008603427.1| - 0.058 13.1 2.3 0.11 12.2 1.6 1.4 1 0 0 1 1 1 0 Laminin Domain II T2SM PF04612.7 gi|549454668|ref|YP_008603427.1| - 0.059 13.1 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M FlaC_arch PF05377.6 gi|549454668|ref|YP_008603427.1| - 0.061 13.2 2.9 0.13 12.1 2.0 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF948 PF06103.6 gi|549454668|ref|YP_008603427.1| - 0.069 13.0 1.1 0.17 11.7 0.8 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Syntaxin PF00804.20 gi|549454668|ref|YP_008603427.1| - 0.083 13.0 0.8 0.2 11.8 0.6 1.6 1 0 0 1 1 1 0 Syntaxin AAA_13 PF13166.1 gi|549454668|ref|YP_008603427.1| - 0.13 10.7 0.7 0.17 10.3 0.5 1.1 1 0 0 1 1 1 0 AAA domain MscS_porin PF12795.2 gi|549454668|ref|YP_008603427.1| - 0.14 11.4 1.5 0.21 10.8 1.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain HAMP PF00672.20 gi|549454668|ref|YP_008603427.1| - 0.16 12.2 0.1 0.28 11.3 0.1 1.4 1 0 0 1 1 1 0 HAMP domain DUF3573 PF12097.3 gi|549454668|ref|YP_008603427.1| - 0.18 10.4 0.4 0.24 9.9 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) Reo_sigmaC PF04582.7 gi|549454668|ref|YP_008603427.1| - 0.2 10.7 0.6 0.3 10.2 0.4 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Osmo_CC PF08946.5 gi|549454668|ref|YP_008603427.1| - 3.3 7.8 4.8 4.6 7.3 1.9 2.3 2 1 1 3 3 3 0 Osmosensory transporter coiled coil BPD_transp_1 PF00528.17 gi|549454669|ref|YP_008603428.1| - 3.4e-20 72.3 21.3 3.4e-20 72.3 14.7 2.0 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|549454670|ref|YP_008603429.1| - 6.5e-21 74.6 15.6 6.5e-21 74.6 10.8 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|549454671|ref|YP_008603430.1| - 6.3e-35 120.4 0.0 1.1e-34 119.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|549454671|ref|YP_008603430.1| - 3.1e-12 46.4 0.0 8.7e-10 38.5 0.0 3.9 4 0 0 4 4 4 1 TOBE domain TOBE_2 PF08402.5 gi|549454671|ref|YP_008603430.1| - 2.1e-10 40.4 0.0 1.7e-09 37.5 0.0 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|549454671|ref|YP_008603430.1| - 2.1e-07 31.1 0.0 0.0069 16.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|549454671|ref|YP_008603430.1| - 0.00039 20.3 0.0 0.00077 19.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|549454671|ref|YP_008603430.1| - 0.0012 18.9 0.1 0.0041 17.1 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|549454671|ref|YP_008603430.1| - 0.0021 18.2 0.0 0.004 17.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|549454671|ref|YP_008603430.1| - 0.0035 17.4 0.1 0.012 15.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|549454671|ref|YP_008603430.1| - 0.0095 15.6 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_23 PF13476.1 gi|549454671|ref|YP_008603430.1| - 0.017 15.4 0.0 0.03 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|549454671|ref|YP_008603430.1| - 0.018 14.1 0.0 1.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_17 PF13207.1 gi|549454671|ref|YP_008603430.1| - 0.02 15.6 0.2 0.058 14.2 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|549454671|ref|YP_008603430.1| - 0.028 13.4 0.0 0.13 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|549454671|ref|YP_008603430.1| - 0.029 14.3 0.0 0.069 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|549454671|ref|YP_008603430.1| - 0.029 13.0 0.0 0.037 12.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|549454671|ref|YP_008603430.1| - 0.058 12.8 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|549454671|ref|YP_008603430.1| - 0.067 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|549454671|ref|YP_008603430.1| - 0.077 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|549454671|ref|YP_008603430.1| - 0.089 12.1 0.0 0.64 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|549454671|ref|YP_008603430.1| - 0.12 12.0 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IGPS PF00218.16 gi|549454672|ref|YP_008603431.1| - 9.8e-35 119.8 0.0 1.1e-34 119.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|549454672|ref|YP_008603431.1| - 0.00017 20.6 0.1 0.00025 20.0 0.0 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|549454672|ref|YP_008603431.1| - 0.0019 17.5 0.0 0.0031 16.8 0.0 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|549454672|ref|YP_008603431.1| - 0.0067 15.7 0.1 0.011 14.9 0.1 1.3 1 0 0 1 1 1 1 PcrB family ThiG PF05690.9 gi|549454672|ref|YP_008603431.1| - 0.052 12.6 0.3 0.079 12.0 0.2 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PRAI PF00697.17 gi|549454673|ref|YP_008603432.1| - 3.5e-13 49.5 0.0 1.2e-12 47.8 0.0 1.7 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PALP PF00291.20 gi|549454674|ref|YP_008603433.1| - 2.6e-37 128.6 1.0 3.5e-37 128.3 0.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|549454675|ref|YP_008603434.1| - 8.4e-17 60.5 0.0 1e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|549454675|ref|YP_008603434.1| - 0.0026 17.0 0.0 0.0037 16.5 0.0 1.3 1 0 0 1 1 1 1 PcrB family NanE PF04131.9 gi|549454675|ref|YP_008603434.1| - 0.0043 16.0 0.0 0.007 15.3 0.0 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.14 gi|549454675|ref|YP_008603434.1| - 0.033 13.3 0.0 0.058 12.4 0.0 1.4 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Glycos_transf_3 PF00591.16 gi|549454676|ref|YP_008603435.1| - 8.3e-88 294.0 0.1 9.8e-88 293.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|549454676|ref|YP_008603435.1| - 4e-15 55.1 0.0 8.1e-15 54.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Chorismate_bind PF00425.13 gi|549454677|ref|YP_008603436.1| - 9.6e-80 267.6 0.0 1.2e-79 267.3 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|549454677|ref|YP_008603436.1| - 0.0004 20.3 0.1 0.0033 17.4 0.1 2.2 1 1 0 1 1 1 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|549454678|ref|YP_008603437.1| - 2.3e-47 160.9 0.0 2.7e-47 160.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|549454678|ref|YP_008603437.1| - 5.5e-08 32.5 0.1 1.2e-07 31.4 0.1 1.5 1 1 0 1 1 1 1 Peptidase C26 PBP_like_2 PF12849.2 gi|549454679|ref|YP_008603438.1| - 1.6e-46 159.0 1.6 2e-46 158.7 1.1 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|549454679|ref|YP_008603438.1| - 1.1e-10 41.7 5.3 1.9e-10 40.9 3.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|549454679|ref|YP_008603438.1| - 7.1e-07 28.3 0.0 1.8e-06 27.0 0.0 1.7 2 1 0 2 2 2 1 PBP superfamily domain FlaE PF07559.9 gi|549454679|ref|YP_008603438.1| - 0.1 13.2 0.0 0.42 11.2 0.0 1.9 2 0 0 2 2 2 0 Flagellar basal body protein FlaE BPD_transp_1 PF00528.17 gi|549454680|ref|YP_008603439.1| - 1.6e-14 53.8 14.6 1.6e-14 53.8 10.1 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|549454681|ref|YP_008603440.1| - 1.2e-13 50.9 17.3 1.2e-13 50.9 12.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC2_membrane PF01061.19 gi|549454681|ref|YP_008603440.1| - 1.3 8.1 14.5 0.5 9.4 7.1 2.3 2 1 0 2 2 2 0 ABC-2 type transporter ABC_tran PF00005.22 gi|549454682|ref|YP_008603441.1| - 1.2e-35 122.7 0.0 1.6e-35 122.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549454682|ref|YP_008603441.1| - 3.2e-14 53.5 0.0 2.7e-07 30.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|549454682|ref|YP_008603441.1| - 1.2e-07 31.2 0.1 3.5e-06 26.4 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|549454682|ref|YP_008603441.1| - 1.9e-05 24.0 0.0 3.7e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|549454682|ref|YP_008603441.1| - 2.3e-05 23.6 0.2 0.0041 16.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|549454682|ref|YP_008603441.1| - 0.00013 21.6 0.1 0.011 15.4 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|549454682|ref|YP_008603441.1| - 0.00015 21.8 0.1 0.00048 20.1 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|549454682|ref|YP_008603441.1| - 0.00065 18.9 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|549454682|ref|YP_008603441.1| - 0.00071 20.3 0.0 0.0012 19.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|549454682|ref|YP_008603441.1| - 0.0017 17.8 0.0 0.031 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|549454682|ref|YP_008603441.1| - 0.002 18.4 0.1 0.0037 17.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|549454682|ref|YP_008603441.1| - 0.0052 16.9 0.1 0.013 15.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|549454682|ref|YP_008603441.1| - 0.0057 16.0 0.0 0.027 13.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|549454682|ref|YP_008603441.1| - 0.0087 16.3 0.0 0.024 14.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain Adeno_IVa2 PF02456.10 gi|549454682|ref|YP_008603441.1| - 0.011 14.4 0.0 0.017 13.7 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein MobB PF03205.9 gi|549454682|ref|YP_008603441.1| - 0.015 15.0 0.3 0.05 13.3 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|549454682|ref|YP_008603441.1| - 0.017 15.0 0.0 0.022 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|549454682|ref|YP_008603441.1| - 0.017 14.7 0.1 0.093 12.3 0.1 2.2 1 1 1 2 2 2 0 AAA domain cobW PF02492.14 gi|549454682|ref|YP_008603441.1| - 0.021 14.2 0.0 0.049 13.0 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.4 gi|549454682|ref|YP_008603441.1| - 0.026 13.1 0.2 0.69 8.4 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.10 gi|549454682|ref|YP_008603441.1| - 0.028 13.1 0.0 0.033 12.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_11 PF13086.1 gi|549454682|ref|YP_008603441.1| - 0.032 13.7 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|549454682|ref|YP_008603441.1| - 0.035 14.3 0.0 0.93 9.6 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|549454682|ref|YP_008603441.1| - 0.036 13.7 0.0 0.07 12.8 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase DUF87 PF01935.12 gi|549454682|ref|YP_008603441.1| - 0.049 13.4 0.1 0.16 11.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 SbcCD_C PF13558.1 gi|549454682|ref|YP_008603441.1| - 0.061 13.2 0.0 0.5 10.3 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA12 PF10443.4 gi|549454682|ref|YP_008603441.1| - 0.094 11.1 0.4 0.27 9.6 0.0 1.7 2 0 0 2 2 2 0 RNA12 protein MMR_HSR1 PF01926.18 gi|549454682|ref|YP_008603441.1| - 0.095 12.6 0.1 0.12 12.2 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.16 gi|549454682|ref|YP_008603441.1| - 0.13 11.4 0.0 0.24 10.5 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Herpes_Helicase PF02689.9 gi|549454682|ref|YP_008603441.1| - 0.15 9.7 0.0 0.16 9.6 0.0 1.1 1 0 0 1 1 1 0 Helicase PhoU PF01895.14 gi|549454683|ref|YP_008603442.1| - 3.5e-21 75.4 7.2 1.4e-14 54.2 2.4 2.2 2 0 0 2 2 2 2 PhoU domain DUF2067 PF09840.4 gi|549454683|ref|YP_008603442.1| - 0.02 14.4 2.9 0.042 13.3 0.2 2.4 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2067) PsbN PF02468.10 gi|549454684|ref|YP_008603443.1| - 0.035 13.7 2.2 0.069 12.7 1.5 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) FAA_hydrolase PF01557.13 gi|549454685|ref|YP_008603444.1| - 7.7e-54 182.4 0.0 1e-53 182.0 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family CitMHS PF03600.11 gi|549454687|ref|YP_008603446.1| - 5.4e-21 74.5 25.8 6.1e-21 74.3 17.2 1.6 1 1 1 2 2 2 1 Citrate transporter ECH PF00378.15 gi|549454688|ref|YP_008603447.1| - 2.2e-43 148.1 0.0 2.5e-43 147.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family CLP_protease PF00574.18 gi|549454688|ref|YP_008603447.1| - 0.15 11.6 1.2 5.1 6.7 0.0 2.9 3 0 0 3 3 3 0 Clp protease DUF4229 PF14012.1 gi|549454689|ref|YP_008603448.1| - 0.0097 15.7 0.3 0.0097 15.7 0.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF4229) KduI PF04962.7 gi|549454689|ref|YP_008603448.1| - 0.17 10.8 0.2 0.3 10.1 0.1 1.3 1 0 0 1 1 1 0 KduI/IolB family Pribosyltran PF00156.22 gi|549454690|ref|YP_008603449.1| - 1.4e-14 53.8 0.4 2.3e-14 53.2 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_31 PF13560.1 gi|549454690|ref|YP_008603449.1| - 4.6e-05 23.5 2.8 6.8e-05 22.9 0.6 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|549454690|ref|YP_008603449.1| - 0.00063 19.5 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix PRTase_2 PF15609.1 gi|549454690|ref|YP_008603449.1| - 0.011 15.0 0.0 0.016 14.5 0.0 1.3 1 1 0 1 1 1 0 Phosphoribosyl transferase UPRTase PF14681.1 gi|549454690|ref|YP_008603449.1| - 0.1 11.8 0.0 0.25 10.5 0.0 1.6 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase Bmp PF02608.9 gi|549454691|ref|YP_008603450.1| - 4.5e-16 58.4 0.0 6.3e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 Basic membrane protein TAT_signal PF10518.4 gi|549454691|ref|YP_008603450.1| - 0.00026 20.7 2.9 0.00026 20.7 2.0 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|549454691|ref|YP_008603450.1| - 0.086 12.0 0.4 0.18 10.9 0.3 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ABC_tran PF00005.22 gi|549454692|ref|YP_008603451.1| - 3.4e-38 131.0 0.0 6.5e-21 75.0 0.0 2.7 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.1 gi|549454692|ref|YP_008603451.1| - 2.2e-07 31.1 0.0 0.00022 21.2 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|549454692|ref|YP_008603451.1| - 0.00017 21.0 0.3 0.0017 17.8 0.1 2.6 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|549454692|ref|YP_008603451.1| - 0.00049 19.6 0.5 0.39 10.1 0.1 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_23 PF13476.1 gi|549454692|ref|YP_008603451.1| - 0.00087 19.6 0.0 0.0013 19.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|549454692|ref|YP_008603451.1| - 0.0031 16.9 2.4 0.1 11.9 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|549454692|ref|YP_008603451.1| - 0.0051 16.8 0.1 0.11 12.4 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|549454692|ref|YP_008603451.1| - 0.015 14.3 0.0 0.23 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|549454692|ref|YP_008603451.1| - 0.016 14.8 0.2 0.031 13.9 0.2 1.5 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|549454692|ref|YP_008603451.1| - 0.03 13.4 0.0 0.097 11.7 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin cobW PF02492.14 gi|549454692|ref|YP_008603451.1| - 0.049 13.0 0.4 0.11 11.8 0.2 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DLIC PF05783.6 gi|549454692|ref|YP_008603451.1| - 0.068 11.8 0.0 0.099 11.2 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) UPF0079 PF02367.12 gi|549454692|ref|YP_008603451.1| - 0.068 12.8 1.6 0.091 12.3 0.2 1.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|549454692|ref|YP_008603451.1| - 0.076 12.2 0.0 0.77 8.9 0.0 2.0 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|549454692|ref|YP_008603451.1| - 0.099 12.8 0.0 0.84 9.8 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF3253 PF11625.3 gi|549454692|ref|YP_008603451.1| - 0.11 12.3 1.2 0.42 10.5 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3253) AAA_33 PF13671.1 gi|549454692|ref|YP_008603451.1| - 0.14 12.0 0.1 1.2 9.0 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|549454692|ref|YP_008603451.1| - 0.18 11.9 1.2 0.87 9.7 0.1 2.4 3 0 0 3 3 3 0 AAA domain DUF3049 PF11250.3 gi|549454692|ref|YP_008603451.1| - 0.19 11.4 1.8 1.4 8.7 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3049) DUF258 PF03193.11 gi|549454692|ref|YP_008603451.1| - 0.24 10.5 0.1 0.46 9.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 BPD_transp_2 PF02653.11 gi|549454693|ref|YP_008603452.1| - 6.6e-20 71.1 38.5 6.6e-20 71.1 26.7 2.0 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|549454694|ref|YP_008603453.1| - 1.8e-33 115.6 41.6 9.1e-33 113.3 28.8 1.8 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Nitro_FeMo-Co PF02579.12 gi|549454695|ref|YP_008603454.1| - 7.8e-08 32.3 0.0 1.2e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor dUTPase PF00692.14 gi|549454696|ref|YP_008603455.1| - 2.1e-09 36.9 0.0 3.1e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 dUTPase Oxidored_molyb PF00174.14 gi|549454698|ref|YP_008603457.1| - 2.9e-36 124.4 0.0 4.1e-36 123.9 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cytochrom_C_asm PF01578.15 gi|549454699|ref|YP_008603458.1| - 7.1e-20 71.4 3.2 7.1e-20 71.4 2.2 1.9 2 0 0 2 2 2 1 Cytochrome C assembly protein TraX PF05857.6 gi|549454699|ref|YP_008603458.1| - 0.37 10.4 4.5 0.82 9.2 3.1 1.9 1 1 0 1 1 1 0 TraX protein Methyltransf_26 PF13659.1 gi|549454700|ref|YP_008603459.1| - 4.9e-07 29.7 0.4 4.4e-06 26.7 0.3 2.4 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|549454700|ref|YP_008603459.1| - 5e-06 26.2 0.0 9.2e-05 22.0 0.0 2.1 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|549454700|ref|YP_008603459.1| - 0.00048 19.6 0.0 0.01 15.3 0.0 2.1 2 0 0 2 2 2 1 DNA methylase DUF1156 PF06634.7 gi|549454700|ref|YP_008603459.1| - 0.002 17.8 0.4 0.0041 16.8 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) MethyltransfD12 PF02086.10 gi|549454700|ref|YP_008603459.1| - 0.01 15.2 0.0 0.022 14.2 0.0 1.5 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|549454700|ref|YP_008603459.1| - 0.045 13.1 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 EamA PF00892.15 gi|549454701|ref|YP_008603460.1| - 2.3e-26 92.3 24.0 1.2e-14 54.3 5.9 2.3 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|549454701|ref|YP_008603460.1| - 7.7e-06 26.0 15.0 3.8e-05 23.8 3.7 3.6 3 1 0 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|549454701|ref|YP_008603460.1| - 0.77 9.3 14.4 0.032 13.8 1.1 3.4 2 2 1 3 3 3 0 Triose-phosphate Transporter family MoCF_biosynth PF00994.19 gi|549454702|ref|YP_008603461.1| - 8.8e-28 96.5 0.1 1e-27 96.2 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF4398 PF14346.1 gi|549454703|ref|YP_008603462.1| - 0.0049 16.9 2.4 0.0067 16.4 1.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) AdoMet_dc PF02675.10 gi|549454704|ref|YP_008603463.1| - 3.5e-32 110.4 0.0 4e-32 110.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase AAA_10 PF12846.2 gi|549454705|ref|YP_008603464.1| - 2.8e-16 59.8 0.2 8.5e-10 38.5 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|549454705|ref|YP_008603464.1| - 1.6e-09 37.9 0.1 3.7e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|549454705|ref|YP_008603464.1| - 2.1e-07 30.6 1.7 1.1e-05 25.0 0.2 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family HAS-barrel PF09378.5 gi|549454705|ref|YP_008603464.1| - 3.1e-07 30.1 0.0 6.2e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 HAS barrel domain AAA_22 PF13401.1 gi|549454705|ref|YP_008603464.1| - 3.6e-06 27.1 0.0 0.012 15.7 0.0 2.8 2 1 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.4 gi|549454705|ref|YP_008603464.1| - 6e-06 25.1 0.0 1.1e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|549454705|ref|YP_008603464.1| - 8.1e-06 26.0 0.1 0.0098 16.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF853 PF05872.7 gi|549454705|ref|YP_008603464.1| - 1.7e-05 23.4 0.0 0.098 10.9 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_25 PF13481.1 gi|549454705|ref|YP_008603464.1| - 1.8e-05 24.2 0.0 0.024 14.0 0.1 2.5 2 0 0 2 2 2 2 AAA domain Zot PF05707.7 gi|549454705|ref|YP_008603464.1| - 0.00028 20.3 0.0 0.0038 16.7 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) ABC_tran PF00005.22 gi|549454705|ref|YP_008603464.1| - 0.00045 20.5 0.2 0.0012 19.1 0.1 1.7 2 0 0 2 2 1 1 ABC transporter AAA_19 PF13245.1 gi|549454705|ref|YP_008603464.1| - 0.00088 18.9 0.0 0.0034 17.1 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_29 PF13555.1 gi|549454705|ref|YP_008603464.1| - 0.0012 18.3 0.3 0.0029 17.0 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SE PF00437.15 gi|549454705|ref|YP_008603464.1| - 0.0012 17.7 0.4 0.0029 16.5 0.3 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein ResIII PF04851.10 gi|549454705|ref|YP_008603464.1| - 0.0013 18.5 0.0 0.68 9.7 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|549454705|ref|YP_008603464.1| - 0.0037 16.7 0.1 1.7 8.0 0.0 2.5 3 0 0 3 3 2 1 DEAD/DEAH box helicase NACHT PF05729.7 gi|549454705|ref|YP_008603464.1| - 0.005 16.5 0.0 0.016 14.8 0.0 1.8 2 0 0 2 2 2 1 NACHT domain cobW PF02492.14 gi|549454705|ref|YP_008603464.1| - 0.0077 15.6 0.2 0.013 14.9 0.1 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|549454705|ref|YP_008603464.1| - 0.01 15.5 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|549454705|ref|YP_008603464.1| - 0.013 15.5 1.8 0.15 12.0 0.1 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|549454705|ref|YP_008603464.1| - 0.017 15.4 0.3 0.028 14.7 0.2 1.2 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|549454705|ref|YP_008603464.1| - 0.027 14.1 0.0 0.3 10.7 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase AAA_17 PF13207.1 gi|549454705|ref|YP_008603464.1| - 0.038 14.8 0.0 0.081 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|549454705|ref|YP_008603464.1| - 0.047 13.5 0.0 0.22 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.7 gi|549454705|ref|YP_008603464.1| - 0.08 12.2 0.1 0.14 11.4 0.1 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_18 PF13238.1 gi|549454705|ref|YP_008603464.1| - 0.095 13.0 0.1 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|549454705|ref|YP_008603464.1| - 0.15 12.5 0.0 0.59 10.6 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein G-alpha PF00503.15 gi|549454705|ref|YP_008603464.1| - 0.16 10.6 0.4 0.25 9.9 0.3 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.1 gi|549454705|ref|YP_008603464.1| - 0.18 11.7 0.1 0.44 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|549454705|ref|YP_008603464.1| - 0.25 11.2 0.1 2.3 8.0 0.1 2.1 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|549454705|ref|YP_008603464.1| - 0.3 10.0 0.2 6.7 5.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF3584 PF12128.3 gi|549454705|ref|YP_008603464.1| - 0.96 6.6 1.1 1.3 6.2 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NurA PF09376.5 gi|549454706|ref|YP_008603465.1| - 5.2e-14 52.3 0.3 7e-14 51.8 0.2 1.2 1 0 0 1 1 1 1 NurA domain Nitroreductase PF00881.19 gi|549454707|ref|YP_008603466.1| - 3.1e-19 69.3 0.0 4.7e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Nitroreductase family SHS2_FTSA PF02491.15 gi|549454707|ref|YP_008603466.1| - 0.012 15.4 0.1 0.023 14.5 0.1 1.4 1 0 0 1 1 1 0 SHS2 domain inserted in FTSA PHP PF02811.14 gi|549454708|ref|YP_008603467.1| - 2.6e-16 59.9 0.0 5e-16 58.9 0.0 1.5 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|549454708|ref|YP_008603467.1| - 4.3e-13 48.5 0.1 1.5e-12 46.8 0.0 2.0 2 0 0 2 2 2 1 PHP-associated AhpC-TSA PF00578.16 gi|549454709|ref|YP_008603468.1| - 0.018 14.7 0.0 0.028 14.0 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family Ribonuclease_P PF00825.13 gi|549454709|ref|YP_008603468.1| - 0.11 12.4 0.0 0.63 9.9 0.0 2.0 2 0 0 2 2 2 0 Ribonuclease P AhpC-TSA PF00578.16 gi|549454710|ref|YP_008603469.1| - 1.5e-41 140.9 0.0 1.8e-41 140.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|549454710|ref|YP_008603469.1| - 7.1e-27 93.7 0.0 8.4e-27 93.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|549454710|ref|YP_008603469.1| - 7.1e-06 25.9 0.0 1e-05 25.3 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|549454710|ref|YP_008603469.1| - 0.00011 21.7 0.0 0.00012 21.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) GSHPx PF00255.14 gi|549454710|ref|YP_008603469.1| - 0.047 13.0 0.0 0.066 12.5 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase Thioredoxin_8 PF13905.1 gi|549454710|ref|YP_008603469.1| - 0.069 13.2 0.0 0.098 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like DUF2175 PF09943.4 gi|549454711|ref|YP_008603470.1| - 9.4e-28 96.2 0.0 1.1e-27 96.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) zf-RING_2 PF13639.1 gi|549454711|ref|YP_008603470.1| - 0.043 13.6 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Ring finger domain Ead_Ea22 PF13935.1 gi|549454711|ref|YP_008603470.1| - 0.063 13.6 0.0 0.063 13.6 0.0 1.1 1 0 0 1 1 1 0 Ead/Ea22-like protein Antitoxin-MazE PF04014.13 gi|549454712|ref|YP_008603471.1| - 5.6e-08 32.3 0.1 1.2e-07 31.2 0.1 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Biotin_lipoyl_2 PF13533.1 gi|549454712|ref|YP_008603471.1| - 0.11 12.2 0.1 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 Biotin-lipoyl like PmbA_TldD PF01523.11 gi|549454714|ref|YP_008603473.1| - 7e-62 209.3 1.4 1e-61 208.8 1.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|549454715|ref|YP_008603474.1| - 1.5e-35 122.9 0.1 1.9e-35 122.5 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Hist_deacetyl PF00850.14 gi|549454716|ref|YP_008603475.1| - 2.5e-63 214.2 0.0 3.1e-63 213.9 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain Antitoxin-MazE PF04014.13 gi|549454717|ref|YP_008603476.1| - 8.2e-09 34.9 0.2 1.9e-08 33.8 0.2 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Tmemb_40 PF10160.4 gi|549454717|ref|YP_008603476.1| - 0.069 12.3 0.1 0.14 11.3 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein DUF429 PF04250.8 gi|549454719|ref|YP_008603478.1| - 5.4e-16 58.4 1.8 3.1e-14 52.7 1.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DNA_pol_B PF00136.16 gi|549454720|ref|YP_008603479.1| - 6.5e-85 285.6 0.0 9.6e-85 285.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|549454720|ref|YP_008603479.1| - 6.7e-32 110.6 0.0 1.3e-31 109.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|549454720|ref|YP_008603479.1| - 1.9e-06 27.7 0.0 4.3e-05 23.3 0.0 2.5 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|549454720|ref|YP_008603479.1| - 0.0017 17.9 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF4050 PF13259.1 gi|549454720|ref|YP_008603479.1| - 0.0031 17.4 0.0 0.0063 16.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4050) tRNA-synt_1g PF09334.6 gi|549454720|ref|YP_008603479.1| - 0.0076 14.9 0.0 0.012 14.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) CCG PF02754.11 gi|549454721|ref|YP_008603480.1| - 1.8e-25 88.7 0.0 3.1e-12 46.3 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|549454721|ref|YP_008603480.1| - 1.4e-12 47.4 2.7 1.4e-12 47.4 1.9 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|549454721|ref|YP_008603480.1| - 3.2e-09 36.4 5.2 9.9e-09 34.8 3.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|549454721|ref|YP_008603480.1| - 1.2e-06 28.7 3.6 0.034 14.4 0.2 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|549454721|ref|YP_008603480.1| - 4.1e-05 23.2 16.7 0.0024 17.6 1.1 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|549454721|ref|YP_008603480.1| - 9.7e-05 22.5 10.0 9.7e-05 22.5 7.0 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|549454721|ref|YP_008603480.1| - 0.00042 20.6 12.6 0.0035 17.6 8.2 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|549454721|ref|YP_008603480.1| - 0.0014 18.1 17.8 0.0074 15.8 0.7 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|549454721|ref|YP_008603480.1| - 0.0018 18.4 18.2 0.032 14.5 2.3 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|549454721|ref|YP_008603480.1| - 0.0018 18.6 14.0 0.026 14.9 0.2 3.3 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|549454721|ref|YP_008603480.1| - 0.0021 17.8 1.6 0.0021 17.8 1.1 3.0 4 0 0 4 4 3 2 4Fe-4S binding domain Nitrate_red_gam PF02665.9 gi|549454721|ref|YP_008603480.1| - 0.0031 16.8 3.7 0.006 15.9 2.5 1.4 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Fer4_21 PF14697.1 gi|549454721|ref|YP_008603480.1| - 0.11 12.4 11.9 0.16 11.8 0.3 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|549454721|ref|YP_008603480.1| - 0.38 11.5 14.2 8.1 7.2 2.2 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|549454721|ref|YP_008603480.1| - 0.61 10.6 6.5 9.9 6.8 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain HSP20 PF00011.16 gi|549454722|ref|YP_008603481.1| - 7.8e-06 25.6 0.0 1.2e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Methyltransf_5 PF01795.14 gi|549454722|ref|YP_008603481.1| - 0.018 14.3 0.2 0.028 13.7 0.1 1.2 1 0 0 1 1 1 0 MraW methylase family PAC2 PF09754.4 gi|549454723|ref|YP_008603482.1| - 4.9e-30 105.0 0.1 6e-30 104.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Aminotran_3 PF00202.16 gi|549454723|ref|YP_008603482.1| - 0.1 11.4 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-III Fer4_15 PF13459.1 gi|549454724|ref|YP_008603483.1| - 3.9e-13 49.7 2.4 4.9e-13 49.4 1.7 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|549454724|ref|YP_008603483.1| - 1.1e-10 41.6 0.4 1.5e-10 41.2 0.3 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|549454724|ref|YP_008603483.1| - 0.15 11.8 2.3 0.35 10.7 1.6 1.6 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster MMR_HSR1 PF01926.18 gi|549454725|ref|YP_008603484.1| - 1e-11 44.8 0.1 2.1e-08 34.1 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|549454725|ref|YP_008603484.1| - 1.1e-07 31.8 1.3 0.0017 18.2 0.1 3.1 3 0 0 3 3 3 2 Dynamin family DUF258 PF03193.11 gi|549454725|ref|YP_008603484.1| - 6.7e-05 22.1 0.0 0.00011 21.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|549454725|ref|YP_008603484.1| - 0.00022 20.7 0.4 0.0021 17.5 0.1 2.2 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|549454725|ref|YP_008603484.1| - 0.0014 17.9 0.1 0.45 9.7 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B cobW PF02492.14 gi|549454725|ref|YP_008603484.1| - 0.0067 15.8 0.4 0.02 14.3 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain LNS2 PF08235.8 gi|549454725|ref|YP_008603484.1| - 0.078 12.5 0.0 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 LNS2 (Lipin/Ned1/Smp2) Miro PF08477.8 gi|549454725|ref|YP_008603484.1| - 0.12 12.8 0.0 0.94 9.9 0.0 2.1 2 0 0 2 2 2 0 Miro-like protein DUF87 PF01935.12 gi|549454727|ref|YP_008603486.1| - 4.6e-49 167.3 0.0 7e-49 166.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|549454727|ref|YP_008603486.1| - 3e-17 63.0 0.0 5.3e-17 62.2 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|549454727|ref|YP_008603486.1| - 1.1e-09 38.0 0.1 2.5e-09 36.9 0.1 1.5 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.7 gi|549454727|ref|YP_008603486.1| - 2.4e-08 32.7 0.1 2.9e-05 22.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|549454727|ref|YP_008603486.1| - 6.1e-05 22.5 0.2 0.017 14.5 0.0 2.6 3 0 0 3 3 3 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|549454727|ref|YP_008603486.1| - 7e-05 21.6 0.0 0.01 14.4 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.5 gi|549454728|ref|YP_008603487.1| - 5.6e-35 120.9 0.0 6.6e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 NurA domain SMC_N PF02463.14 gi|549454729|ref|YP_008603488.1| - 1.3e-20 73.6 6.6 1.9e-09 37.0 3.5 2.5 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|549454729|ref|YP_008603488.1| - 2.3e-18 67.2 0.0 2.3e-18 67.2 0.0 5.0 1 1 1 2 2 1 1 AAA domain AAA_21 PF13304.1 gi|549454729|ref|YP_008603488.1| - 2.7e-16 60.4 0.2 1.7e-08 34.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|549454729|ref|YP_008603488.1| - 1.3e-15 56.9 37.5 0.00021 19.8 2.5 5.8 2 1 2 5 5 5 4 AAA domain Rad50_zn_hook PF04423.9 gi|549454729|ref|YP_008603488.1| - 1.2e-10 40.6 0.4 1.2e-10 40.6 0.3 5.3 4 0 0 4 4 4 1 Rad50 zinc hook motif SbcCD_C PF13558.1 gi|549454729|ref|YP_008603488.1| - 6.1e-10 38.8 0.1 1.2e-08 34.7 0.0 2.9 3 0 0 3 3 2 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|549454729|ref|YP_008603488.1| - 2.4e-08 33.4 0.0 2.8e-05 23.3 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain ABC_tran PF00005.22 gi|549454729|ref|YP_008603488.1| - 3.9e-08 33.6 6.7 3.2e-05 24.2 0.0 5.1 2 1 0 2 2 2 1 ABC transporter AAA_29 PF13555.1 gi|549454729|ref|YP_008603488.1| - 2.7e-07 29.9 0.0 4.9e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|549454729|ref|YP_008603488.1| - 0.00029 19.5 1.4 0.00064 18.4 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class IncA PF04156.9 gi|549454729|ref|YP_008603488.1| - 0.0018 17.9 10.8 0.0018 17.9 7.5 5.7 3 3 2 5 5 5 2 IncA protein BLOC1_2 PF10046.4 gi|549454729|ref|YP_008603488.1| - 0.0025 17.8 33.6 4.6 7.4 1.1 7.2 4 3 2 6 6 6 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 TBPIP PF07106.8 gi|549454729|ref|YP_008603488.1| - 0.0036 16.8 2.1 0.0036 16.8 1.5 6.3 4 2 2 6 6 6 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF258 PF03193.11 gi|549454729|ref|YP_008603488.1| - 0.0085 15.2 0.1 0.086 12.0 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Reo_sigmaC PF04582.7 gi|549454729|ref|YP_008603488.1| - 0.01 15.0 16.1 0.26 10.4 2.7 4.1 2 2 3 5 5 5 0 Reovirus sigma C capsid protein FtsK_SpoIIIE PF01580.13 gi|549454729|ref|YP_008603488.1| - 0.014 14.8 0.0 0.014 14.8 0.0 4.6 3 2 1 4 4 3 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.18 gi|549454729|ref|YP_008603488.1| - 0.022 14.7 0.0 0.081 12.8 0.0 2.0 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|549454729|ref|YP_008603488.1| - 0.056 13.5 4.6 0.1 12.7 0.0 3.7 4 1 0 4 4 3 0 AAA domain DUF948 PF06103.6 gi|549454729|ref|YP_008603488.1| - 0.056 13.2 11.7 29 4.6 0.0 6.8 4 2 2 7 7 7 0 Bacterial protein of unknown function (DUF948) DUF3251 PF11622.3 gi|549454729|ref|YP_008603488.1| - 0.061 12.7 0.7 4.4 6.7 0.0 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3251) Miro PF08477.8 gi|549454729|ref|YP_008603488.1| - 0.09 13.2 0.0 0.3 11.5 0.0 1.9 1 0 0 1 1 1 0 Miro-like protein AAA_25 PF13481.1 gi|549454729|ref|YP_008603488.1| - 0.22 10.8 0.0 0.22 10.8 0.0 3.5 3 1 0 3 3 3 0 AAA domain GAS PF13851.1 gi|549454729|ref|YP_008603488.1| - 0.26 10.4 71.8 0.24 10.5 11.0 6.0 2 2 4 6 6 6 0 Growth-arrest specific micro-tubule binding Dynamin_N PF00350.18 gi|549454729|ref|YP_008603488.1| - 0.46 10.3 0.0 0.46 10.3 0.0 3.0 3 0 0 3 3 2 0 Dynamin family AAA_10 PF12846.2 gi|549454729|ref|YP_008603488.1| - 0.64 9.3 0.0 0.64 9.3 0.0 3.4 2 1 0 2 2 1 0 AAA-like domain WXG100 PF06013.7 gi|549454729|ref|YP_008603488.1| - 3.6 7.6 18.0 22 5.1 0.5 6.7 6 2 1 7 7 6 0 Proteins of 100 residues with WXG FliD_N PF02465.13 gi|549454729|ref|YP_008603488.1| - 3.6 7.9 14.0 1.4 9.3 0.9 5.3 4 2 2 6 6 3 0 Flagellar hook-associated protein 2 N-terminus DNA_ligase_ZBD PF03119.11 gi|549454729|ref|YP_008603488.1| - 4.7 7.0 5.7 0.66 9.7 0.5 2.3 2 0 0 2 2 1 0 NAD-dependent DNA ligase C4 zinc finger domain CENP-F_leu_zip PF10473.4 gi|549454729|ref|YP_008603488.1| - 5.2 6.9 93.5 0.038 13.8 13.5 6.9 2 2 5 7 7 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlaC_arch PF05377.6 gi|549454729|ref|YP_008603488.1| - 6.5 6.7 36.6 0.32 10.9 0.3 8.1 6 3 1 8 8 7 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|549454729|ref|YP_008603488.1| - 6.9 6.1 87.2 0.3 10.5 11.3 5.1 2 1 3 5 5 5 0 Ezrin/radixin/moesin family DUF1664 PF07889.7 gi|549454729|ref|YP_008603488.1| - 8.4 6.2 36.4 0.67 9.7 1.9 7.0 3 2 4 8 8 8 0 Protein of unknown function (DUF1664) Metallophos_2 PF12850.2 gi|549454730|ref|YP_008603489.1| - 8.2e-11 41.9 0.0 1.5e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|549454730|ref|YP_008603489.1| - 1.5e-09 37.5 0.2 4.2e-09 36.1 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Ribosomal_L40e PF01020.12 gi|549454731|ref|YP_008603490.1| - 7.3e-08 31.8 7.1 8.5e-08 31.6 4.9 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.1 gi|549454731|ref|YP_008603490.1| - 0.0037 16.7 0.4 0.0049 16.3 0.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|549454731|ref|YP_008603490.1| - 0.0054 16.5 1.6 0.0065 16.2 1.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|549454731|ref|YP_008603490.1| - 0.0065 15.6 1.9 0.0085 15.2 1.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain YgbA_NO PF11756.3 gi|549454731|ref|YP_008603490.1| - 0.026 14.5 0.6 0.026 14.5 0.4 1.0 1 0 0 1 1 1 0 Nitrous oxide-stimulated promoter DnaJ_CXXCXGXG PF00684.14 gi|549454731|ref|YP_008603490.1| - 0.046 13.7 0.6 0.052 13.5 0.4 1.1 1 0 0 1 1 1 0 DnaJ central domain zf-RanBP PF00641.13 gi|549454731|ref|YP_008603490.1| - 0.057 12.5 4.5 0.1 11.7 3.0 1.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others zf-FPG_IleRS PF06827.9 gi|549454731|ref|YP_008603490.1| - 0.67 9.6 7.8 3.1 7.5 0.3 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS RNA_POL_M_15KD PF02150.11 gi|549454731|ref|YP_008603490.1| - 0.67 9.6 4.2 1.2 8.9 0.0 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|549454731|ref|YP_008603490.1| - 0.86 9.5 3.7 3.8 7.5 2.5 2.0 1 1 1 2 2 2 0 Zinc ribbon domain YhfH PF14149.1 gi|549454731|ref|YP_008603490.1| - 0.88 9.4 0.1 0.88 9.4 0.1 2.3 3 0 0 3 3 3 0 YhfH-like protein UPF0547 PF10571.4 gi|549454731|ref|YP_008603490.1| - 1.1 9.0 3.6 2 8.1 2.5 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Mu-like_Com PF10122.4 gi|549454731|ref|YP_008603490.1| - 1.1 8.3 10.2 0.36 9.9 0.4 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-trcl PF13451.1 gi|549454731|ref|YP_008603490.1| - 4.3 7.0 7.0 6.3 6.5 2.1 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain Ribosomal_L37e PF01907.14 gi|549454731|ref|YP_008603490.1| - 8.4 6.2 10.3 7.7 6.3 1.4 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e XPG_I PF00867.13 gi|549454732|ref|YP_008603491.1| - 4e-26 90.8 0.0 6.4e-26 90.2 0.0 1.3 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|549454732|ref|YP_008603491.1| - 2.9e-22 78.8 0.0 4.7e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain ASCH PF04266.9 gi|549454733|ref|YP_008603492.1| - 1.9e-14 53.9 0.0 2.8e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 ASCH domain Lar_restr_allev PF14354.1 gi|549454734|ref|YP_008603493.1| - 0.017 15.3 0.1 0.027 14.7 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Rubredoxin PF00301.15 gi|549454734|ref|YP_008603493.1| - 0.047 13.5 0.4 11 6.0 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Prok-RING_1 PF14446.1 gi|549454734|ref|YP_008603493.1| - 0.055 13.2 0.7 0.65 9.7 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|549454734|ref|YP_008603493.1| - 0.19 11.4 2.0 12 5.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-GRF PF06839.7 gi|549454735|ref|YP_008603494.1| - 0.0032 17.3 0.9 0.0039 17.0 0.6 1.1 1 0 0 1 1 1 1 GRF zinc finger DUF4379 PF14311.1 gi|549454735|ref|YP_008603494.1| - 0.0055 16.4 0.3 0.0076 16.0 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4379) zf-ribbon_3 PF13248.1 gi|549454735|ref|YP_008603494.1| - 0.0099 15.0 3.5 0.039 13.1 2.4 1.8 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|549454735|ref|YP_008603494.1| - 0.011 15.1 5.5 1.1 8.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|549454735|ref|YP_008603494.1| - 0.017 14.7 0.1 0.019 14.6 0.0 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Ribosomal_L33 PF00471.15 gi|549454735|ref|YP_008603494.1| - 0.018 15.2 1.3 0.23 11.7 0.2 2.0 2 0 0 2 2 2 0 Ribosomal protein L33 DZR PF12773.2 gi|549454735|ref|YP_008603494.1| - 0.022 14.5 0.8 0.066 13.0 0.6 1.7 1 1 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|549454735|ref|YP_008603494.1| - 0.049 13.4 2.1 0.16 11.8 1.4 1.8 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF3797 PF12677.2 gi|549454735|ref|YP_008603494.1| - 0.052 13.1 0.8 5.1 6.7 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Cys_rich_CPXG PF14255.1 gi|549454735|ref|YP_008603494.1| - 0.13 12.0 0.7 1.6 8.6 0.2 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_5 PF13719.1 gi|549454735|ref|YP_008603494.1| - 0.22 11.1 3.3 0.24 11.0 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|549454735|ref|YP_008603494.1| - 0.46 10.0 4.2 1.2 8.6 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|549454735|ref|YP_008603494.1| - 0.77 9.5 4.3 0.48 10.1 0.4 2.0 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|549454735|ref|YP_008603494.1| - 1.2 8.8 4.1 4.3 7.0 0.3 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2_6 PF13912.1 gi|549454735|ref|YP_008603494.1| - 3.5 7.6 5.2 4.3 7.3 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger tRNA-Thr_ED PF08915.6 gi|549454736|ref|YP_008603495.1| - 3.6e-45 153.3 0.0 8.9e-45 152.0 0.0 1.6 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|549454736|ref|YP_008603495.1| - 5.7e-13 48.6 0.0 9.7e-13 47.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain Rad51 PF08423.6 gi|549454737|ref|YP_008603496.1| - 7.7e-96 319.9 0.0 9.4e-96 319.6 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|549454737|ref|YP_008603496.1| - 2.9e-15 56.1 0.0 3.7e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.1 gi|549454737|ref|YP_008603496.1| - 1.5e-14 53.8 0.3 3.5e-14 52.7 0.2 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|549454737|ref|YP_008603496.1| - 6.7e-13 48.4 0.0 1e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|549454737|ref|YP_008603496.1| - 8.9e-12 44.6 0.0 1.3e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|549454737|ref|YP_008603496.1| - 2.3e-06 27.3 0.0 6.2e-06 26.0 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|549454737|ref|YP_008603496.1| - 1.6e-05 24.3 1.6 0.00019 20.9 0.1 2.9 3 1 0 3 3 3 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|549454737|ref|YP_008603496.1| - 5.1e-05 23.1 0.0 0.00013 21.8 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|549454737|ref|YP_008603496.1| - 0.00012 21.5 0.0 0.00036 20.0 0.0 1.8 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.1 gi|549454737|ref|YP_008603496.1| - 0.0014 18.5 0.2 0.011 15.6 0.0 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4332) AAA_18 PF13238.1 gi|549454737|ref|YP_008603496.1| - 0.0053 17.0 0.1 0.014 15.7 0.0 1.8 2 0 0 2 2 1 1 AAA domain 5_3_exonuc PF01367.15 gi|549454737|ref|YP_008603496.1| - 0.0073 16.5 0.1 0.037 14.2 0.0 2.0 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.3 gi|549454737|ref|YP_008603496.1| - 0.011 15.7 0.0 0.053 13.5 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif AAA_22 PF13401.1 gi|549454737|ref|YP_008603496.1| - 0.016 15.3 0.0 0.041 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|549454737|ref|YP_008603496.1| - 0.017 14.6 0.0 0.065 12.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain HhH-GPD PF00730.20 gi|549454737|ref|YP_008603496.1| - 0.028 14.7 0.0 0.062 13.5 0.0 1.7 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HHH_3 PF12836.2 gi|549454737|ref|YP_008603496.1| - 0.031 14.2 0.0 3.8 7.5 0.0 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|549454737|ref|YP_008603496.1| - 0.089 12.9 0.0 0.25 11.5 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF1009 PF06230.6 gi|549454737|ref|YP_008603496.1| - 0.1 11.9 0.4 0.22 10.8 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1009) Peptidase_A24 PF01478.13 gi|549454738|ref|YP_008603497.1| - 0.0027 17.8 8.5 0.0055 16.8 5.9 1.5 1 0 0 1 1 1 1 Type IV leader peptidase family HIT PF01230.18 gi|549454739|ref|YP_008603498.1| - 1e-12 48.4 0.0 1.4e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|549454739|ref|YP_008603498.1| - 1.3e-06 28.6 0.0 1.7e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|549454739|ref|YP_008603498.1| - 1.7e-06 27.6 0.0 2.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DHH PF01368.15 gi|549454740|ref|YP_008603499.1| - 4.5e-10 39.3 0.0 9.4e-10 38.3 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|549454740|ref|YP_008603499.1| - 1.5e-06 27.7 0.3 4.7e-06 26.2 0.2 1.8 1 0 0 1 1 1 1 DHHA1 domain DUF4129 PF13559.1 gi|549454741|ref|YP_008603500.1| - 7.5e-15 54.6 1.1 1.7e-14 53.5 0.3 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) HEPN PF05168.9 gi|549454741|ref|YP_008603500.1| - 0.056 13.3 0.0 1.5 8.7 0.0 2.5 2 0 0 2 2 2 0 HEPN domain DUF4392 PF14336.1 gi|549454742|ref|YP_008603501.1| - 0.0063 15.3 0.0 0.052 12.3 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4392) AAA_3 PF07726.6 gi|549454743|ref|YP_008603502.1| - 1.1e-58 196.5 0.0 1.6e-58 196.0 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|549454743|ref|YP_008603502.1| - 1.1e-14 54.3 0.0 2.8e-14 53.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|549454743|ref|YP_008603502.1| - 2.9e-07 29.6 0.1 0.0001 21.2 0.1 2.9 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|549454743|ref|YP_008603502.1| - 1.1e-05 25.6 0.0 3.6e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|549454743|ref|YP_008603502.1| - 1.4e-05 24.2 0.3 0.00045 19.3 0.2 2.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|549454743|ref|YP_008603502.1| - 0.00084 18.5 1.4 0.25 10.4 0.3 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|549454743|ref|YP_008603502.1| - 0.0014 18.1 0.0 0.06 12.8 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|549454743|ref|YP_008603502.1| - 0.0014 19.4 0.0 0.0096 16.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|549454743|ref|YP_008603502.1| - 0.11 11.9 0.1 0.5 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF58 PF01882.13 gi|549454744|ref|YP_008603503.1| - 5.9e-16 58.3 0.3 1.4e-15 57.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF424 PF04242.8 gi|549454747|ref|YP_008603506.1| - 5.2e-22 77.6 0.1 5.8e-22 77.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) ETF PF01012.16 gi|549454748|ref|YP_008603507.1| - 3.9e-33 114.4 0.8 6.6e-33 113.7 0.5 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain DUF1884 PF08967.5 gi|549454748|ref|YP_008603507.1| - 0.072 13.1 0.0 0.39 10.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1884) ETF_alpha PF00766.14 gi|549454749|ref|YP_008603508.1| - 2.7e-30 103.8 0.0 4.7e-30 103.0 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|549454749|ref|YP_008603508.1| - 3.7e-13 49.5 0.0 3.2e-12 46.4 0.0 2.1 2 0 0 2 2 2 1 Electron transfer flavoprotein domain TPP_enzyme_M PF00205.17 gi|549454749|ref|YP_008603508.1| - 0.00095 18.9 0.0 0.34 10.6 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DUF1646 PF07854.7 gi|549454750|ref|YP_008603509.1| - 1e-149 498.4 32.5 1.2e-149 498.1 22.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) G_glu_transpept PF01019.16 gi|549454751|ref|YP_008603510.1| - 8.6e-109 364.3 0.0 1e-108 364.0 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase EII-Sor PF03609.9 gi|549454751|ref|YP_008603510.1| - 0.044 13.0 1.3 0.062 12.5 0.9 1.2 1 0 0 1 1 1 0 PTS system sorbose-specific iic component Usp PF00582.21 gi|549454752|ref|YP_008603511.1| - 2e-37 128.4 4.2 3.4e-18 66.1 0.7 2.1 2 0 0 2 2 2 2 Universal stress protein family DNA_photolyase PF00875.13 gi|549454752|ref|YP_008603511.1| - 0.00059 19.6 0.3 0.77 9.4 0.0 2.8 2 1 1 3 3 3 2 DNA photolyase Transketolase_C PF02780.15 gi|549454752|ref|YP_008603511.1| - 0.043 13.7 1.1 0.079 12.8 0.0 2.0 3 0 0 3 3 3 0 Transketolase, C-terminal domain Methyltrans_SAM PF10672.4 gi|549454753|ref|YP_008603512.1| - 1.5e-17 63.4 0.0 2e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Cons_hypoth95 PF03602.10 gi|549454753|ref|YP_008603512.1| - 2.6e-13 49.7 0.0 4.1e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_26 PF13659.1 gi|549454753|ref|YP_008603512.1| - 2.2e-08 34.1 0.0 4.4e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|549454753|ref|YP_008603512.1| - 2.3e-05 24.0 0.0 3.3e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|549454753|ref|YP_008603512.1| - 0.0005 19.4 0.0 0.00082 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|549454753|ref|YP_008603512.1| - 0.0015 17.7 0.0 0.0023 17.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PUA PF01472.15 gi|549454753|ref|YP_008603512.1| - 0.007 16.0 0.1 0.016 14.9 0.1 1.6 1 0 0 1 1 1 1 PUA domain Methyltransf_18 PF12847.2 gi|549454753|ref|YP_008603512.1| - 0.0076 16.8 0.0 0.033 14.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Nsp1_C PF05064.8 gi|549454753|ref|YP_008603512.1| - 0.033 13.8 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 Nsp1-like C-terminal region Fe_dep_repress PF01325.14 gi|549454754|ref|YP_008603513.1| - 9.2e-10 38.3 0.0 1.6e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|549454754|ref|YP_008603513.1| - 3.5e-06 26.5 0.0 6e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|549454754|ref|YP_008603513.1| - 1.4e-05 24.6 0.0 8.5e-05 22.1 0.0 2.2 2 1 0 2 2 2 1 MarR family MarR PF01047.17 gi|549454754|ref|YP_008603513.1| - 7.7e-05 22.3 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|549454754|ref|YP_008603513.1| - 0.013 14.9 0.0 0.031 13.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|549454754|ref|YP_008603513.1| - 0.022 15.0 0.0 0.046 14.0 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|549454754|ref|YP_008603513.1| - 0.045 13.4 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|549454754|ref|YP_008603513.1| - 0.045 13.3 0.0 0.09 12.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|549454754|ref|YP_008603513.1| - 0.049 13.4 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|549454754|ref|YP_008603513.1| - 0.049 13.3 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_45 PF14947.1 gi|549454754|ref|YP_008603513.1| - 0.05 13.4 0.1 0.077 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|549454754|ref|YP_008603513.1| - 0.052 13.5 0.0 0.24 11.4 0.0 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain GerE PF00196.14 gi|549454754|ref|YP_008603513.1| - 0.056 12.7 0.1 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Snf7 PF03357.16 gi|549454755|ref|YP_008603514.1| - 1.7e-06 27.5 2.1 2.3e-06 27.1 1.5 1.1 1 0 0 1 1 1 1 Snf7 Baculo_PEP_C PF04513.7 gi|549454755|ref|YP_008603514.1| - 0.0058 16.4 0.0 0.85 9.4 0.0 2.2 2 0 0 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus NEP PF10167.4 gi|549454755|ref|YP_008603514.1| - 0.0096 15.6 0.4 2.6 7.7 0.2 2.7 1 1 2 3 3 3 2 Uncharacterised conserved protein Epimerase_2 PF02350.14 gi|549454755|ref|YP_008603514.1| - 0.033 12.9 0.3 0.055 12.2 0.1 1.5 1 1 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase SMC_Nse1 PF07574.8 gi|549454755|ref|YP_008603514.1| - 0.062 12.9 0.1 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex DUF1664 PF07889.7 gi|549454756|ref|YP_008603515.1| - 0.0028 17.4 2.8 0.0061 16.3 0.6 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) MCPsignal PF00015.16 gi|549454756|ref|YP_008603515.1| - 0.011 15.2 1.8 0.018 14.5 1.2 1.3 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Fzo_mitofusin PF04799.8 gi|549454756|ref|YP_008603515.1| - 0.017 14.4 0.8 0.036 13.4 0.5 1.5 1 0 0 1 1 1 0 fzo-like conserved region AKNA PF12443.3 gi|549454756|ref|YP_008603515.1| - 0.027 14.5 0.9 0.04 13.9 0.1 1.7 2 0 0 2 2 2 0 AT-hook-containing transcription factor DUF552 PF04472.7 gi|549454756|ref|YP_008603515.1| - 0.15 11.9 2.7 17 5.4 0.0 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF552) HDV_ag PF01517.13 gi|549454756|ref|YP_008603515.1| - 0.16 11.6 4.0 0.061 12.9 0.4 1.8 2 0 0 2 2 2 0 Hepatitis delta virus delta antigen COG5 PF10392.4 gi|549454756|ref|YP_008603515.1| - 0.46 10.4 5.2 0.59 10.1 1.9 2.1 1 1 2 3 3 3 0 Golgi transport complex subunit 5 LXG PF04740.7 gi|549454756|ref|YP_008603515.1| - 1.4 8.6 6.2 4.2 7.0 1.4 2.4 1 1 0 2 2 2 0 LXG domain of WXG superfamily Atg14 PF10186.4 gi|549454756|ref|YP_008603515.1| - 3.9 6.3 6.8 5.5 5.8 4.7 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF972 PF06156.8 gi|549454756|ref|YP_008603515.1| - 5.2 7.4 6.3 3.1 8.1 0.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) P5CR_dimer PF14748.1 gi|549454757|ref|YP_008603516.1| - 9.7e-32 109.1 0.1 1.6e-31 108.4 0.1 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|549454757|ref|YP_008603516.1| - 1.1e-17 64.2 0.8 2.7e-17 62.9 0.5 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|549454757|ref|YP_008603516.1| - 3.6e-07 29.7 0.6 7.5e-07 28.7 0.4 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|549454757|ref|YP_008603516.1| - 2.7e-05 23.3 0.0 4.2e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|549454757|ref|YP_008603516.1| - 0.00024 20.8 1.5 0.0063 16.2 1.0 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|549454757|ref|YP_008603516.1| - 0.00033 20.5 0.1 0.00068 19.5 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.12 gi|549454757|ref|YP_008603516.1| - 0.00052 18.9 0.0 0.0019 17.1 0.0 1.7 2 0 0 2 2 2 1 Prephenate dehydrogenase NAD_binding_10 PF13460.1 gi|549454757|ref|YP_008603516.1| - 0.0065 16.4 2.0 0.008 16.2 0.5 1.9 2 1 0 2 2 2 1 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|549454757|ref|YP_008603516.1| - 0.099 12.2 0.3 0.18 11.3 0.2 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|549454757|ref|YP_008603516.1| - 0.85 9.4 3.9 2.7 7.7 2.7 1.9 1 0 0 1 1 1 0 ThiF family Peptidase_M54 PF07998.6 gi|549454758|ref|YP_008603517.1| - 5.1e-32 111.2 0.0 6.4e-32 110.9 0.0 1.0 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|549454758|ref|YP_008603517.1| - 0.0003 20.5 0.0 0.00032 20.4 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.4 gi|549454758|ref|YP_008603517.1| - 0.003 16.4 0.0 0.0041 16.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase M66 Metallopep PF12044.3 gi|549454758|ref|YP_008603517.1| - 0.0085 14.5 0.4 0.012 14.0 0.3 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_4 PF13583.1 gi|549454758|ref|YP_008603517.1| - 0.036 13.6 0.0 0.046 13.2 0.0 1.1 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|549454758|ref|YP_008603517.1| - 0.075 13.0 0.0 0.088 12.8 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|549454758|ref|YP_008603517.1| - 0.13 12.1 0.1 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Archease PF01951.11 gi|549454759|ref|YP_008603518.1| - 2e-42 144.3 0.1 2.2e-42 144.2 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) UPF0150 PF03681.10 gi|549454759|ref|YP_008603518.1| - 0.0033 17.0 0.2 0.071 12.7 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0150) HhH-GPD PF00730.20 gi|549454760|ref|YP_008603519.1| - 2.1e-21 76.2 0.0 2.8e-21 75.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|549454760|ref|YP_008603519.1| - 0.00022 20.7 0.1 0.0011 18.5 0.0 2.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|549454760|ref|YP_008603519.1| - 0.00089 19.3 0.4 0.1 12.8 0.0 2.5 1 1 1 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|549454760|ref|YP_008603519.1| - 0.0013 18.7 10.2 0.0022 18.1 7.0 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Ets PF00178.17 gi|549454760|ref|YP_008603519.1| - 0.005 16.9 0.0 0.014 15.5 0.0 1.7 1 0 0 1 1 1 1 Ets-domain Transposase_20 PF02371.11 gi|549454760|ref|YP_008603519.1| - 0.012 15.7 0.0 0.067 13.2 0.0 2.2 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family HHH_8 PF14716.1 gi|549454760|ref|YP_008603519.1| - 0.056 13.6 0.3 2.1 8.6 0.0 2.9 2 2 1 3 3 3 0 Helix-hairpin-helix domain MelC1 PF06236.6 gi|549454761|ref|YP_008603520.1| - 0.17 11.8 0.8 0.21 11.5 0.0 1.6 2 0 0 2 2 2 0 Tyrosinase co-factor MelC1 Cdc6_C PF09079.6 gi|549454762|ref|YP_008603521.1| - 5.3e-09 35.6 0.0 1.3e-08 34.3 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|549454762|ref|YP_008603521.1| - 7.1e-08 32.6 0.0 1.5e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|549454762|ref|YP_008603521.1| - 0.00073 18.2 0.0 0.004 15.8 0.1 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|549454762|ref|YP_008603521.1| - 0.019 14.9 0.1 0.13 12.1 0.1 2.2 1 1 0 1 1 1 0 AAA ATPase domain HTH_5 PF01022.15 gi|549454763|ref|YP_008603522.1| - 0.00013 21.5 1.8 0.00016 21.2 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|549454763|ref|YP_008603522.1| - 0.0028 17.4 0.0 0.0048 16.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|549454763|ref|YP_008603522.1| - 0.0028 17.2 0.3 0.0059 16.2 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|549454763|ref|YP_008603522.1| - 0.0048 16.6 0.1 0.0074 16.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_9 PF08221.6 gi|549454763|ref|YP_008603522.1| - 0.0089 15.8 0.1 0.02 14.7 0.1 1.6 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.14 gi|549454763|ref|YP_008603522.1| - 0.013 15.1 0.1 0.018 14.7 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.6 gi|549454763|ref|YP_008603522.1| - 0.028 14.1 0.2 0.054 13.2 0.1 1.6 1 1 0 1 1 1 0 CDC6, C terminal HTH_11 PF08279.7 gi|549454763|ref|YP_008603522.1| - 0.052 13.2 0.2 0.11 12.1 0.1 1.5 1 1 0 1 1 1 0 HTH domain Ftsk_gamma PF09397.5 gi|549454763|ref|YP_008603522.1| - 0.094 12.4 0.2 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Ftsk gamma domain HTH_24 PF13412.1 gi|549454763|ref|YP_008603522.1| - 0.15 11.5 0.1 0.15 11.5 0.1 1.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|549454764|ref|YP_008603523.1| - 1.4e-13 50.2 1.3 1.9e-11 43.4 0.0 3.1 1 1 2 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|549454764|ref|YP_008603523.1| - 0.0017 18.3 0.1 0.12 12.4 0.0 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|549454764|ref|YP_008603523.1| - 0.079 12.6 1.4 5 6.8 0.5 2.9 3 0 0 3 3 3 0 MarR family HTH_23 PF13384.1 gi|549454764|ref|YP_008603523.1| - 0.086 12.5 0.0 6.8 6.4 0.0 2.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_29 PF13551.1 gi|549454764|ref|YP_008603523.1| - 0.095 12.8 0.2 0.53 10.4 0.0 2.2 2 1 0 2 2 2 0 Winged helix-turn helix NicO PF03824.11 gi|549454766|ref|YP_008603525.1| - 0.011 15.0 1.6 0.019 14.3 1.1 1.4 1 1 0 1 1 1 0 High-affinity nickel-transport protein DUF4212 PF13937.1 gi|549454766|ref|YP_008603525.1| - 0.032 14.2 2.1 0.046 13.7 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) MgtE PF01769.11 gi|549454767|ref|YP_008603526.1| - 5.1e-09 36.5 42.7 7.6e-09 35.9 7.4 3.2 1 1 1 3 3 3 2 Divalent cation transporter TMEMspv1-c74-12 PF11044.3 gi|549454767|ref|YP_008603526.1| - 8 6.1 6.4 5.3 6.6 0.7 2.9 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein 5-FTHF_cyc-lig PF01812.15 gi|549454768|ref|YP_008603527.1| - 5.4e-39 133.8 0.0 6.2e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family YcaO PF02624.11 gi|549454768|ref|YP_008603527.1| - 0.085 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 YcaO-like family MTHFR PF02219.12 gi|549454769|ref|YP_008603528.1| - 0.0013 17.9 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase UbiA PF01040.13 gi|549454770|ref|YP_008603529.1| - 1.4e-38 132.6 23.3 2e-38 132.1 16.2 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family tRNA-synt_1f PF01921.13 gi|549454771|ref|YP_008603530.1| - 1.6e-105 352.7 0.0 2e-105 352.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) Zn_Tnp_IS1595 PF12760.2 gi|549454771|ref|YP_008603530.1| - 0.016 14.9 1.2 0.041 13.6 0.8 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RecX PF02631.11 gi|549454771|ref|YP_008603530.1| - 0.095 12.9 0.1 0.48 10.6 0.0 2.2 2 0 0 2 2 2 0 RecX family PCNA_N PF00705.13 gi|549454772|ref|YP_008603531.1| - 3.4e-10 39.5 0.0 2.3e-09 36.8 0.0 2.0 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|549454772|ref|YP_008603531.1| - 3.7e-05 23.6 0.1 0.0007 19.5 0.0 2.6 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Aldedh PF00171.17 gi|549454773|ref|YP_008603532.1| - 3.5e-28 98.1 0.2 4e-27 94.6 0.2 2.3 1 1 0 1 1 1 1 Aldehyde dehydrogenase family Cob_adeno_trans PF01923.13 gi|549454774|ref|YP_008603533.1| - 5.6e-47 159.5 0.0 6.4e-47 159.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase HTH_3 PF01381.17 gi|549454776|ref|YP_008603535.1| - 5.3e-06 26.1 1.2 9.3e-06 25.4 0.1 2.0 3 0 0 3 3 3 1 Helix-turn-helix HTH_11 PF08279.7 gi|549454776|ref|YP_008603535.1| - 0.00057 19.4 0.3 0.0081 15.7 0.1 2.4 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|549454776|ref|YP_008603535.1| - 0.0086 15.4 0.6 0.019 14.3 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|549454776|ref|YP_008603535.1| - 0.016 14.6 0.1 0.047 13.1 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|549454776|ref|YP_008603535.1| - 0.018 14.7 0.4 0.054 13.1 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_32 PF13565.1 gi|549454776|ref|YP_008603535.1| - 0.022 15.5 1.4 4.3 8.2 0.3 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Tnp_1 PF01527.15 gi|549454776|ref|YP_008603535.1| - 0.03 14.2 0.2 0.095 12.6 0.0 1.9 1 1 0 2 2 2 0 Transposase HTH_AsnC-type PF13404.1 gi|549454776|ref|YP_008603535.1| - 0.035 13.6 0.2 0.035 13.6 0.2 2.4 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_19 PF12844.2 gi|549454776|ref|YP_008603535.1| - 0.042 13.9 0.0 0.13 12.3 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.14 gi|549454776|ref|YP_008603535.1| - 0.061 13.2 0.1 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 Trp repressor protein Aminotran_1_2 PF00155.16 gi|549454777|ref|YP_008603536.1| - 8.4e-40 136.8 0.0 1.1e-39 136.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|549454777|ref|YP_008603536.1| - 2.1e-08 33.1 0.0 7.6e-08 31.3 0.0 1.7 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_5 PF00266.14 gi|549454777|ref|YP_008603536.1| - 6.8e-05 21.7 0.0 0.0001 21.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|549454777|ref|YP_008603536.1| - 0.00033 19.8 0.1 0.001 18.2 0.1 1.9 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|549454777|ref|YP_008603536.1| - 0.00072 18.7 0.0 0.00098 18.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase ECH PF00378.15 gi|549454777|ref|YP_008603536.1| - 0.12 11.4 0.0 0.22 10.5 0.0 1.4 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family Cys_Met_Meta_PP PF01053.15 gi|549454777|ref|YP_008603536.1| - 0.16 10.2 0.0 0.35 9.0 0.0 1.5 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme Gp_dh_N PF00044.19 gi|549454778|ref|YP_008603537.1| - 3.8e-21 75.6 0.0 2.2e-20 73.1 0.0 2.2 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|549454778|ref|YP_008603537.1| - 1.5e-17 63.4 0.1 2.4e-17 62.8 0.1 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|549454778|ref|YP_008603537.1| - 9.2e-11 41.7 0.0 2.6e-10 40.3 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|549454778|ref|YP_008603537.1| - 1.3e-05 25.6 0.0 0.00012 22.5 0.0 2.4 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|549454778|ref|YP_008603537.1| - 0.0004 19.5 1.0 0.6 9.2 0.2 2.9 2 1 1 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|549454778|ref|YP_008603537.1| - 0.042 14.1 0.0 0.11 12.8 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain PGK PF00162.14 gi|549454779|ref|YP_008603538.1| - 2.8e-103 345.4 0.0 3.1e-103 345.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Lactamase_B_3 PF13483.1 gi|549454780|ref|YP_008603539.1| - 1e-33 116.3 0.1 1.3e-33 116.0 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|549454780|ref|YP_008603539.1| - 5.8e-12 45.5 1.9 1.3e-10 41.1 1.3 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HgmA PF04209.8 gi|549454780|ref|YP_008603539.1| - 0.11 10.9 0.0 0.12 10.6 0.0 1.1 1 0 0 1 1 1 0 homogentisate 1,2-dioxygenase MoeA_N PF03453.12 gi|549454781|ref|YP_008603540.1| - 4.9e-34 117.0 0.0 2.1e-33 114.9 0.0 2.1 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|549454781|ref|YP_008603540.1| - 1.9e-13 50.0 0.0 3.3e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MobB PF03205.9 gi|549454782|ref|YP_008603541.1| - 9.4e-27 93.4 0.3 1.1e-26 93.2 0.2 1.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|549454782|ref|YP_008603541.1| - 0.00095 18.6 0.0 0.00095 18.6 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain Arch_ATPase PF01637.13 gi|549454782|ref|YP_008603541.1| - 0.0027 17.4 0.0 0.0037 17.0 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase AAA_26 PF13500.1 gi|549454782|ref|YP_008603541.1| - 0.0034 17.0 0.1 0.21 11.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|549454782|ref|YP_008603541.1| - 0.0039 17.0 0.0 0.0055 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|549454782|ref|YP_008603541.1| - 0.0048 16.6 0.2 0.008 15.9 0.2 1.3 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|549454782|ref|YP_008603541.1| - 0.0061 16.5 0.1 0.0067 16.4 0.0 1.2 1 1 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|549454782|ref|YP_008603541.1| - 0.0063 15.4 0.0 0.0081 15.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein TK PF00265.13 gi|549454782|ref|YP_008603541.1| - 0.0066 16.0 0.0 0.0078 15.7 0.0 1.3 1 1 0 1 1 1 1 Thymidine kinase AAA_17 PF13207.1 gi|549454782|ref|YP_008603541.1| - 0.0081 16.9 0.0 0.012 16.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|549454782|ref|YP_008603541.1| - 0.01 15.2 0.1 0.016 14.6 0.1 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RecA PF00154.16 gi|549454782|ref|YP_008603541.1| - 0.012 14.6 0.0 0.02 13.9 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_19 PF13245.1 gi|549454782|ref|YP_008603541.1| - 0.017 14.8 0.4 0.036 13.8 0.3 1.5 1 0 0 1 1 1 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|549454782|ref|YP_008603541.1| - 0.019 14.8 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|549454782|ref|YP_008603541.1| - 0.021 14.9 0.0 0.029 14.5 0.0 1.3 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|549454782|ref|YP_008603541.1| - 0.025 14.1 0.3 0.039 13.5 0.2 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|549454782|ref|YP_008603541.1| - 0.026 15.0 0.1 0.038 14.5 0.1 1.4 1 1 0 1 1 1 0 Miro-like protein ArgK PF03308.11 gi|549454782|ref|YP_008603541.1| - 0.029 13.1 0.8 0.06 12.1 0.6 1.5 1 0 0 1 1 1 0 ArgK protein LpxK PF02606.9 gi|549454782|ref|YP_008603541.1| - 0.039 12.9 0.9 0.079 11.9 0.4 1.6 1 1 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase ABC_tran PF00005.22 gi|549454782|ref|YP_008603541.1| - 0.045 14.0 0.0 0.048 13.9 0.0 1.3 1 1 0 1 1 1 0 ABC transporter CbiK PF06180.6 gi|549454782|ref|YP_008603541.1| - 0.053 12.6 0.0 0.087 11.8 0.0 1.3 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) AAA_35 PF14516.1 gi|549454782|ref|YP_008603541.1| - 0.064 11.8 0.0 0.079 11.5 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|549454782|ref|YP_008603541.1| - 0.065 13.5 0.0 0.077 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|549454782|ref|YP_008603541.1| - 0.09 12.7 0.3 0.19 11.7 0.2 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|549454782|ref|YP_008603541.1| - 0.11 11.5 0.0 0.2 10.7 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin ACT_7 PF13840.1 gi|549454782|ref|YP_008603541.1| - 0.13 11.8 0.0 0.3 10.6 0.0 1.6 1 0 0 1 1 1 0 ACT domain AAA_11 PF13086.1 gi|549454782|ref|YP_008603541.1| - 0.13 11.7 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain NTP_transf_3 PF12804.2 gi|549454783|ref|YP_008603542.1| - 5.5e-21 75.3 0.6 8.6e-21 74.6 0.4 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|549454783|ref|YP_008603542.1| - 0.0022 17.5 0.0 0.0042 16.6 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Ribosomal_L38e PF01781.13 gi|549454784|ref|YP_008603543.1| - 2.3e-11 43.2 2.3 2.8e-11 42.9 1.6 1.1 1 0 0 1 1 1 1 Ribosomal L38e protein family LSM PF01423.17 gi|549454784|ref|YP_008603543.1| - 0.086 12.4 0.0 0.095 12.2 0.0 1.2 1 0 0 1 1 1 0 LSM domain TAF PF02969.12 gi|549454784|ref|YP_008603543.1| - 0.18 11.8 0.9 0.25 11.3 0.4 1.4 1 1 0 1 1 1 0 TATA box binding protein associated factor (TAF) Beta-Casp PF10996.3 gi|549454785|ref|YP_008603544.1| - 5.3e-21 74.8 0.0 8.1e-21 74.2 0.0 1.3 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|549454785|ref|YP_008603544.1| - 6.4e-20 71.6 2.2 9.9e-20 71.0 1.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|549454785|ref|YP_008603544.1| - 1.2e-14 54.3 0.0 1.9e-12 47.1 0.0 2.2 2 0 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|549454785|ref|YP_008603544.1| - 2.8e-13 49.4 0.1 5.9e-13 48.4 0.1 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|549454785|ref|YP_008603544.1| - 7e-05 22.5 0.0 0.00087 19.0 0.0 2.2 1 1 1 2 2 2 1 Beta-lactamase superfamily domain DUF167 PF02594.11 gi|549454786|ref|YP_008603545.1| - 7.6e-22 77.0 0.1 9.4e-22 76.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Tub PF01167.13 gi|549454786|ref|YP_008603545.1| - 0.087 11.7 0.0 0.089 11.7 0.0 1.1 1 0 0 1 1 1 0 Tub family TauE PF01925.14 gi|549454787|ref|YP_008603546.1| - 5.8e-45 153.6 41.6 7.1e-45 153.3 28.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE SpoVAB PF13782.1 gi|549454787|ref|YP_008603546.1| - 1.5 8.8 16.6 1.9 8.5 2.0 2.9 2 1 0 2 2 2 0 Stage V sporulation protein AB MFS_1 PF07690.11 gi|549454788|ref|YP_008603547.1| - 1.5e-26 92.9 48.2 1.3e-13 50.3 22.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|549454788|ref|YP_008603547.1| - 0.00029 20.5 3.0 0.016 14.9 0.2 3.0 2 0 0 2 2 2 2 MFS_1 like family Nuc_H_symport PF03825.11 gi|549454788|ref|YP_008603547.1| - 0.011 14.4 19.0 0.018 13.8 13.2 1.3 1 1 0 1 1 1 0 Nucleoside H+ symporter Sld5 PF05916.6 gi|549454789|ref|YP_008603548.1| - 8.3e-09 35.7 0.2 1.2e-08 35.2 0.1 1.2 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.18 gi|549454790|ref|YP_008603549.1| - 4e-137 456.4 0.0 5.1e-137 456.1 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|549454790|ref|YP_008603549.1| - 1.8e-24 86.5 0.3 6.3e-24 84.7 0.0 2.1 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|549454790|ref|YP_008603549.1| - 2.5e-07 30.0 0.0 5.6e-05 22.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|549454790|ref|YP_008603549.1| - 4.4e-07 29.7 0.0 9.1e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RPA_C PF08784.6 gi|549454790|ref|YP_008603549.1| - 0.0014 19.0 0.0 0.0032 17.8 0.0 1.6 1 0 0 1 1 1 1 Replication protein A C terminal AAA_3 PF07726.6 gi|549454790|ref|YP_008603549.1| - 0.0025 17.4 0.0 0.0049 16.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TrmB PF01978.14 gi|549454790|ref|YP_008603549.1| - 0.035 13.8 0.1 0.086 12.5 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma54_activat PF00158.21 gi|549454790|ref|YP_008603549.1| - 0.11 11.9 0.1 0.59 9.5 0.1 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain DEAD PF00270.24 gi|549454791|ref|YP_008603550.1| - 3.5e-20 72.1 0.0 5.9e-20 71.4 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|549454791|ref|YP_008603550.1| - 2.4e-12 46.8 0.1 2.2e-10 40.5 0.0 3.3 2 1 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|549454791|ref|YP_008603550.1| - 1.2e-11 44.3 0.0 2.3e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|549454791|ref|YP_008603550.1| - 5e-09 36.2 0.0 1.5e-08 34.6 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|549454791|ref|YP_008603550.1| - 5.2e-09 35.3 0.0 3.4e-05 23.3 0.0 3.2 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|549454791|ref|YP_008603550.1| - 2.6e-08 33.6 0.0 1.8e-07 30.9 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif Sec63 PF02889.11 gi|549454791|ref|YP_008603550.1| - 0.00057 19.2 0.0 0.00075 18.8 0.0 1.1 1 0 0 1 1 1 1 Sec63 Brl domain DNA_pol_lambd_f PF10391.4 gi|549454791|ref|YP_008603550.1| - 0.0013 18.1 0.0 0.0055 16.2 0.0 2.0 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda AAA_10 PF12846.2 gi|549454791|ref|YP_008603550.1| - 0.0014 18.1 0.1 0.013 15.0 0.1 2.3 2 1 1 3 3 3 1 AAA-like domain IstB_IS21 PF01695.12 gi|549454791|ref|YP_008603550.1| - 0.0018 17.6 0.0 0.0046 16.3 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF4332 PF14229.1 gi|549454791|ref|YP_008603550.1| - 0.0019 18.1 0.0 0.0075 16.2 0.0 2.0 2 0 0 2 2 1 1 Domain of unknown function (DUF4332) HHH_3 PF12836.2 gi|549454791|ref|YP_008603550.1| - 0.0041 17.0 0.0 0.014 15.3 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA_25 PF13481.1 gi|549454791|ref|YP_008603550.1| - 0.0042 16.5 0.0 0.015 14.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|549454791|ref|YP_008603550.1| - 0.014 14.2 0.0 0.024 13.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Flavi_DEAD PF07652.9 gi|549454791|ref|YP_008603550.1| - 0.019 14.7 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 Flavivirus DEAD domain AAA_22 PF13401.1 gi|549454791|ref|YP_008603550.1| - 0.027 14.6 0.0 3.2 7.8 0.0 2.7 3 0 0 3 3 2 0 AAA domain AAA_19 PF13245.1 gi|549454791|ref|YP_008603550.1| - 0.028 14.1 0.1 0.028 14.1 0.1 3.2 3 0 0 3 3 3 0 Part of AAA domain PhoH PF02562.11 gi|549454791|ref|YP_008603550.1| - 0.035 13.3 0.1 0.13 11.4 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein IMS_HHH PF11798.3 gi|549454791|ref|YP_008603550.1| - 0.037 14.0 0.0 1 9.5 0.0 2.8 2 0 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.1 gi|549454791|ref|YP_008603550.1| - 0.071 13.3 0.0 0.24 11.6 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|549454791|ref|YP_008603550.1| - 0.074 12.9 0.0 1 9.3 0.0 2.7 3 1 1 4 4 2 0 Pathogenicity locus DEAD_2 PF06733.10 gi|549454791|ref|YP_008603550.1| - 0.24 10.7 0.0 0.36 10.2 0.0 1.2 1 0 0 1 1 1 0 DEAD_2 Saccharop_dh PF03435.13 gi|549454792|ref|YP_008603551.1| - 2.6e-09 36.5 0.0 3.2e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|549454792|ref|YP_008603551.1| - 8.3e-06 25.3 0.0 1.3e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|549454792|ref|YP_008603551.1| - 0.00014 21.5 0.1 0.00038 20.1 0.0 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|549454792|ref|YP_008603551.1| - 0.00019 21.2 0.4 0.00049 19.9 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase DAO PF01266.19 gi|549454792|ref|YP_008603551.1| - 0.0026 16.7 0.3 0.0073 15.2 0.1 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase TrkA_N PF02254.13 gi|549454792|ref|YP_008603551.1| - 0.0033 17.4 0.0 0.0051 16.8 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|549454792|ref|YP_008603551.1| - 0.014 14.8 0.2 0.032 13.6 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|549454792|ref|YP_008603551.1| - 0.035 13.2 0.0 0.061 12.4 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|549454792|ref|YP_008603551.1| - 0.043 13.8 0.7 0.37 10.7 0.3 2.1 1 1 1 2 2 2 0 NADH(P)-binding IlvN PF07991.7 gi|549454792|ref|YP_008603551.1| - 0.056 12.8 0.0 0.086 12.1 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_8 PF13450.1 gi|549454792|ref|YP_008603551.1| - 0.065 13.2 0.3 0.2 11.7 0.2 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|549454792|ref|YP_008603551.1| - 0.11 11.5 0.3 0.2 10.7 0.1 1.5 2 0 0 2 2 2 0 FAD binding domain ThiF PF00899.16 gi|549454792|ref|YP_008603551.1| - 0.17 11.7 0.2 0.28 11.0 0.1 1.3 1 0 0 1 1 1 0 ThiF family RE_TaqI PF09573.5 gi|549454792|ref|YP_008603551.1| - 0.2 10.7 0.1 0.42 9.7 0.0 1.5 2 0 0 2 2 2 0 TaqI restriction endonuclease RuvB_C PF05491.8 gi|549454793|ref|YP_008603552.1| - 0.082 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus HTH_31 PF13560.1 gi|549454794|ref|YP_008603553.1| - 2.6e-09 37.1 0.0 7.6e-09 35.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|549454794|ref|YP_008603553.1| - 5.3e-07 29.3 0.0 1.8e-06 27.7 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|549454794|ref|YP_008603553.1| - 1.2e-06 28.4 0.0 2.4e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|549454794|ref|YP_008603553.1| - 0.032 13.7 0.0 0.067 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|549454794|ref|YP_008603553.1| - 0.11 12.1 0.0 0.42 10.3 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_37 PF13744.1 gi|549454794|ref|YP_008603553.1| - 0.11 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|549454794|ref|YP_008603553.1| - 0.12 11.6 0.0 0.36 10.1 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 UBA PF00627.26 gi|549454795|ref|YP_008603554.1| - 1.4e-08 34.2 0.8 2.9e-08 33.3 0.5 1.5 1 0 0 1 1 1 1 UBA/TS-N domain NAC PF01849.13 gi|549454795|ref|YP_008603554.1| - 2.7e-05 23.5 0.1 6.1e-05 22.4 0.0 1.7 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.1 gi|549454795|ref|YP_008603554.1| - 0.06 12.8 0.1 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain DUF3606 PF12244.3 gi|549454795|ref|YP_008603554.1| - 0.094 12.3 0.1 0.36 10.4 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3606) PMT PF02366.13 gi|549454796|ref|YP_008603555.1| - 3.9e-06 26.3 7.2 3.9e-06 26.3 5.0 3.0 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.1 gi|549454796|ref|YP_008603555.1| - 7.8e-06 25.8 11.3 7.8e-06 25.8 7.8 2.7 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF4208 PF13907.1 gi|549454797|ref|YP_008603556.1| - 0.064 13.4 0.1 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) tRNA_bind_2 PF13725.1 gi|549454797|ref|YP_008603556.1| - 0.09 12.8 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Possible tRNA binding domain ATP-cone PF03477.11 gi|549454797|ref|YP_008603556.1| - 0.1 13.0 0.0 0.83 10.1 0.0 2.3 3 0 0 3 3 3 0 ATP cone domain NAD_binding_8 PF13450.1 gi|549454798|ref|YP_008603557.1| - 0.00042 20.2 1.0 0.0017 18.3 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|549454798|ref|YP_008603557.1| - 0.039 13.5 0.1 0.056 13.0 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|549454798|ref|YP_008603557.1| - 0.055 13.3 0.0 0.085 12.6 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DEAD PF00270.24 gi|549454800|ref|YP_008603559.1| - 1.1e-24 86.8 0.0 1.7e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|549454800|ref|YP_008603559.1| - 4.1e-14 52.2 0.0 6.8e-13 48.2 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|549454800|ref|YP_008603559.1| - 1.6e-11 44.5 0.1 4.9e-11 43.0 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.10 gi|549454800|ref|YP_008603559.1| - 0.00068 19.5 0.0 0.0013 18.5 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|549454800|ref|YP_008603559.1| - 0.0057 15.5 0.0 0.0085 14.9 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain Methyltransf_18 PF12847.2 gi|549454800|ref|YP_008603559.1| - 0.04 14.5 0.0 0.36 11.4 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Pox_A32 PF04665.7 gi|549454800|ref|YP_008603559.1| - 0.22 10.7 0.0 0.32 10.2 0.0 1.1 1 0 0 1 1 1 0 Poxvirus A32 protein PTS_2-RNA PF01885.11 gi|549454801|ref|YP_008603560.1| - 1e-38 132.5 0.0 1.3e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Auto_anti-p27 PF06677.7 gi|549454802|ref|YP_008603561.1| - 2.6e-19 68.6 0.3 4.8e-19 67.8 0.2 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cupin_6 PF12852.2 gi|549454802|ref|YP_008603561.1| - 0.059 12.9 0.0 0.062 12.9 0.0 1.2 1 0 0 1 1 1 0 Cupin Peptidase_M50 PF02163.17 gi|549454804|ref|YP_008603563.1| - 1e-15 57.1 5.4 1e-15 57.1 3.8 2.8 2 2 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|549454804|ref|YP_008603563.1| - 5.4e-07 29.4 0.2 5.4e-07 29.4 0.2 2.1 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.19 gi|549454804|ref|YP_008603563.1| - 0.00083 19.4 0.1 0.0023 18.0 0.0 1.7 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Peptidase_M50B PF13398.1 gi|549454804|ref|YP_008603563.1| - 0.015 14.6 0.2 0.015 14.6 0.1 2.6 3 1 1 4 4 4 0 Peptidase M50B-like GRASP55_65 PF04495.9 gi|549454804|ref|YP_008603563.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain 2TM PF13239.1 gi|549454804|ref|YP_008603563.1| - 0.32 11.0 3.8 0.19 11.7 0.1 2.4 3 0 0 3 3 3 0 2TM domain PfkB PF00294.19 gi|549454805|ref|YP_008603564.1| - 4.4e-07 29.3 0.0 6.6e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Peptidase_M16 PF00675.15 gi|549454806|ref|YP_008603565.1| - 1.3e-20 73.6 0.0 2.1e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.16 gi|549454806|ref|YP_008603565.1| - 2.6e-14 53.3 0.0 4.5e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase M16 inactive domain NTP_transf_2 PF01909.18 gi|549454807|ref|YP_008603566.1| - 1.5e-08 34.8 0.0 2.3e-08 34.2 0.0 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain HTH_24 PF13412.1 gi|549454807|ref|YP_008603566.1| - 0.029 13.7 0.1 0.067 12.5 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|549454807|ref|YP_008603566.1| - 4.8 6.5 10.2 0.17 11.2 0.4 2.9 4 0 0 4 4 4 0 Sigma-70, region 4 Methyltransf_11 PF08241.7 gi|549454809|ref|YP_008603568.1| - 6.9e-15 55.3 0.0 1.3e-14 54.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|549454809|ref|YP_008603568.1| - 2.9e-10 39.9 0.0 3.9e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|549454809|ref|YP_008603568.1| - 1.7e-09 37.9 0.1 2.6e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|549454809|ref|YP_008603568.1| - 2.2e-09 37.8 0.0 2.7e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|549454809|ref|YP_008603568.1| - 2.1e-08 34.0 0.0 2.5e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|549454809|ref|YP_008603568.1| - 3.9e-08 33.6 0.0 5.9e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|549454809|ref|YP_008603568.1| - 1.8e-06 27.2 0.0 2.1e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|549454809|ref|YP_008603568.1| - 2.5e-05 24.2 0.1 3.5e-05 23.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|549454809|ref|YP_008603568.1| - 0.00017 21.0 0.0 0.00035 20.0 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|549454809|ref|YP_008603568.1| - 0.044 13.1 0.0 0.068 12.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|549454809|ref|YP_008603568.1| - 0.089 11.4 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Ribosomal_L2_C PF03947.13 gi|549454810|ref|YP_008603569.1| - 1.8e-44 150.6 0.4 2.4e-44 150.2 0.3 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|549454810|ref|YP_008603569.1| - 2e-14 53.2 0.0 4.3e-14 52.2 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain AAA_10 PF12846.2 gi|549454811|ref|YP_008603570.1| - 6.7e-15 55.2 0.0 6.3e-07 29.1 0.0 2.2 1 1 1 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|549454811|ref|YP_008603570.1| - 5.8e-07 29.1 0.0 3.1e-05 23.5 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF87 PF01935.12 gi|549454811|ref|YP_008603570.1| - 1.1e-06 28.5 0.0 1.9e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|549454811|ref|YP_008603570.1| - 1.5e-06 26.8 0.0 0.00067 18.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.1 gi|549454811|ref|YP_008603570.1| - 9.1e-06 25.8 0.0 2.4e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|549454811|ref|YP_008603570.1| - 6.4e-05 22.6 0.3 0.00022 20.9 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain TrwB_AAD_bind PF10412.4 gi|549454811|ref|YP_008603570.1| - 0.00014 20.6 0.0 0.00058 18.6 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|549454811|ref|YP_008603570.1| - 0.0026 17.7 0.3 0.0088 16.0 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|549454811|ref|YP_008603570.1| - 0.0068 15.8 0.0 0.016 14.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|549454811|ref|YP_008603570.1| - 0.0078 16.0 0.0 0.046 13.5 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit NACHT PF05729.7 gi|549454811|ref|YP_008603570.1| - 0.024 14.3 0.1 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain RuvB_N PF05496.7 gi|549454811|ref|YP_008603570.1| - 0.041 12.9 0.0 0.092 11.7 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus T2SE PF00437.15 gi|549454811|ref|YP_008603570.1| - 0.11 11.3 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF340 PF03956.8 gi|549454813|ref|YP_008603572.1| - 0.015 14.5 0.5 0.017 14.4 0.3 1.1 1 0 0 1 1 1 0 Membrane protein of unknown function (DUF340) PEP_mutase PF13714.1 gi|549454814|ref|YP_008603573.1| - 7.2e-58 195.6 1.4 8.6e-58 195.3 1.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|549454814|ref|YP_008603573.1| - 2.7e-16 58.8 2.3 1.4e-15 56.5 1.5 1.8 1 1 1 2 2 2 2 Isocitrate lyase family Methyltrn_RNA_3 PF02598.12 gi|549454815|ref|YP_008603574.1| - 4.3e-41 141.1 0.0 5.6e-41 140.8 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|549454815|ref|YP_008603574.1| - 0.05 13.4 0.0 0.24 11.2 0.0 2.0 2 1 0 2 2 2 0 SpoU rRNA Methylase family Ribosomal_L3 PF00297.17 gi|549454816|ref|YP_008603575.1| - 6.9e-62 209.2 0.0 8e-62 209.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|549454817|ref|YP_008603576.1| - 2.2e-38 131.5 0.2 2.6e-38 131.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|549454818|ref|YP_008603577.1| - 5.1e-19 68.0 2.7 7e-19 67.5 1.9 1.2 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.12 gi|549454818|ref|YP_008603577.1| - 0.083 12.5 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Sulfurtransferase TusA DNA_mis_repair PF01119.14 gi|549454818|ref|YP_008603577.1| - 0.11 11.9 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 DNA mismatch repair protein, C-terminal domain ParA PF10609.4 gi|549454819|ref|YP_008603578.1| - 2.3e-28 97.9 0.3 9.6e-28 95.8 0.0 2.1 2 0 0 2 2 2 1 ParA/MinD ATPase like CbiA PF01656.18 gi|549454819|ref|YP_008603578.1| - 1.5e-16 60.4 0.1 3e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|549454819|ref|YP_008603578.1| - 1.2e-10 41.0 0.2 3e-05 23.3 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|549454819|ref|YP_008603578.1| - 5.7e-07 29.6 0.1 2.3e-06 27.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|549454819|ref|YP_008603578.1| - 1.5e-05 24.6 0.2 0.0021 17.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|549454819|ref|YP_008603578.1| - 6.7e-05 22.3 0.0 0.00022 20.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|549454819|ref|YP_008603578.1| - 6.8e-05 22.0 0.0 0.00012 21.2 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein MipZ PF09140.6 gi|549454819|ref|YP_008603578.1| - 0.00019 20.6 0.0 0.00046 19.3 0.0 1.6 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|549454819|ref|YP_008603578.1| - 0.00024 20.2 0.5 0.0023 17.0 0.2 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase MtrA PF04208.9 gi|549454819|ref|YP_008603578.1| - 0.0098 15.3 0.1 0.018 14.4 0.0 1.3 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A YhjQ PF06564.7 gi|549454819|ref|YP_008603578.1| - 0.014 14.8 0.2 0.076 12.3 0.1 1.9 2 0 0 2 2 2 0 YhjQ protein ArgK PF03308.11 gi|549454819|ref|YP_008603578.1| - 0.015 14.0 0.3 0.066 11.9 0.1 1.9 2 0 0 2 2 2 0 ArgK protein AAA_30 PF13604.1 gi|549454819|ref|YP_008603578.1| - 0.017 14.7 0.1 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|549454819|ref|YP_008603578.1| - 0.051 13.0 0.1 0.072 12.5 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain IstB_IS21 PF01695.12 gi|549454819|ref|YP_008603578.1| - 0.051 12.9 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein PhoH PF02562.11 gi|549454819|ref|YP_008603578.1| - 0.074 12.2 0.2 0.14 11.3 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.1 gi|549454819|ref|YP_008603578.1| - 0.15 11.8 0.5 0.69 9.7 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain DASH_Dad3 PF08656.5 gi|549454819|ref|YP_008603578.1| - 0.17 11.6 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 DASH complex subunit Dad3 CBS PF00571.23 gi|549454820|ref|YP_008603579.1| - 3.3e-53 177.2 15.6 2.7e-16 59.0 0.1 4.1 4 0 0 4 4 4 4 CBS domain DUF2786 PF10979.3 gi|549454820|ref|YP_008603579.1| - 0.054 13.2 0.9 12 5.6 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2786) CBS PF00571.23 gi|549454821|ref|YP_008603580.1| - 1.3e-51 172.1 9.8 3e-13 49.3 0.0 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|549454822|ref|YP_008603581.1| - 3.4e-41 138.7 11.8 1.7e-12 46.9 0.3 4.1 4 0 0 4 4 4 4 CBS domain AIRS PF00586.19 gi|549454823|ref|YP_008603582.1| - 0.00023 21.3 0.1 0.0006 20.0 0.1 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|549454823|ref|YP_008603582.1| - 0.01 15.8 0.2 0.018 15.0 0.0 1.5 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain TP_methylase PF00590.15 gi|549454824|ref|YP_008603583.1| - 3.8e-45 154.1 0.5 4.4e-45 153.9 0.4 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Chlor_dismutase PF06778.7 gi|549454825|ref|YP_008603584.1| - 7.2e-44 149.8 0.0 8.3e-44 149.6 0.0 1.0 1 0 0 1 1 1 1 Chlorite dismutase CAP18_C PF12153.3 gi|549454826|ref|YP_008603585.1| - 0.11 12.1 0.5 0.11 12.1 0.4 2.2 2 0 0 2 2 2 0 LPS binding domain of CAP18 (C terminal) Spt5-NGN PF03439.8 gi|549454826|ref|YP_008603585.1| - 0.13 12.0 1.0 12 5.6 0.0 2.2 1 1 1 2 2 2 0 Early transcription elongation factor of RNA pol II, NGN section PSII_Pbs27 PF13326.1 gi|549454829|ref|YP_008603588.1| - 0.0028 17.6 0.1 0.005 16.8 0.1 1.3 1 1 0 1 1 1 1 Photosystem II Pbs27 ERF PF04404.7 gi|549454829|ref|YP_008603588.1| - 0.033 13.7 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 ERF superfamily SnAC PF14619.1 gi|549454829|ref|YP_008603588.1| - 0.087 13.0 1.0 0.087 13.0 0.7 1.8 2 0 0 2 2 2 0 Snf2-ATP coupling, chromatin remodelling complex HTH_32 PF13565.1 gi|549454829|ref|YP_008603588.1| - 0.11 13.3 0.2 0.15 12.8 0.2 1.2 1 0 0 1 1 1 0 Homeodomain-like domain Redoxin PF08534.5 gi|549454830|ref|YP_008603589.1| - 0.0036 16.8 0.2 0.013 15.0 0.1 1.8 1 1 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|549454830|ref|YP_008603589.1| - 0.0054 16.8 0.1 0.042 13.9 0.0 2.2 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|549454830|ref|YP_008603589.1| - 0.0088 16.2 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|549454830|ref|YP_008603589.1| - 0.0093 15.6 0.1 0.019 14.6 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|549454830|ref|YP_008603589.1| - 0.026 14.5 0.2 0.056 13.4 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin SNO PF01174.14 gi|549454831|ref|YP_008603590.1| - 1.3e-48 165.1 0.0 1.5e-48 164.9 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.23 gi|549454831|ref|YP_008603590.1| - 1.7e-09 37.3 0.0 2.8e-09 36.6 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|549454831|ref|YP_008603590.1| - 1.2e-08 34.6 0.0 1.6e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|549454831|ref|YP_008603590.1| - 1.8e-05 24.5 0.0 2.2e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 SOR_SNZ PF01680.12 gi|549454832|ref|YP_008603591.1| - 4.6e-91 304.0 3.0 6.8e-91 303.5 2.1 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|549454832|ref|YP_008603591.1| - 3.5e-05 23.0 0.4 3.5e-05 23.0 0.3 2.5 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|549454832|ref|YP_008603591.1| - 0.0014 17.9 1.8 0.48 9.6 0.1 3.3 2 2 1 3 3 3 2 Histidine biosynthesis protein NMO PF03060.10 gi|549454832|ref|YP_008603591.1| - 0.0021 17.2 0.2 0.0021 17.2 0.2 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase Dus PF01207.12 gi|549454832|ref|YP_008603591.1| - 0.0037 16.1 1.0 0.32 9.7 0.0 2.5 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|549454832|ref|YP_008603591.1| - 0.0095 15.0 0.0 0.13 11.2 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|549454832|ref|YP_008603591.1| - 0.01 14.8 0.3 0.41 9.5 0.0 2.3 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase VitK2_biosynth PF02621.9 gi|549454833|ref|YP_008603592.1| - 8.5e-75 251.1 0.0 9.6e-75 251.0 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis Radical_SAM PF04055.16 gi|549454834|ref|YP_008603593.1| - 2.8e-15 56.8 0.0 4.2e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|549454834|ref|YP_008603593.1| - 0.089 12.8 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain TrmB PF01978.14 gi|549454834|ref|YP_008603593.1| - 0.1 12.3 0.1 3.9 7.2 0.0 2.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Radical_SAM PF04055.16 gi|549454835|ref|YP_008603594.1| - 4.9e-15 56.0 0.0 7.5e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily VitK2_biosynth PF02621.9 gi|549454836|ref|YP_008603595.1| - 4.3e-10 39.2 0.0 7.1e-10 38.5 0.0 1.3 1 1 0 1 1 1 1 Menaquinone biosynthesis NTP_transferase PF00483.18 gi|549454837|ref|YP_008603596.1| - 2.8e-26 92.3 0.0 3.2e-26 92.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|549454837|ref|YP_008603596.1| - 2.1e-14 53.8 0.0 2.6e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF359 PF04019.7 gi|549454838|ref|YP_008603597.1| - 1.4e-22 79.3 0.0 1.9e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|549454839|ref|YP_008603598.1| - 6.3e-11 41.9 0.1 7.6e-11 41.7 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zf-ribbon_3 PF13248.1 gi|549454839|ref|YP_008603598.1| - 1.6e-06 27.0 1.8 2.4e-06 26.5 1.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|549454839|ref|YP_008603598.1| - 2.1e-05 24.2 0.9 2.7e-05 23.8 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|549454839|ref|YP_008603598.1| - 8.4e-05 21.9 4.0 0.00013 21.3 2.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|549454839|ref|YP_008603598.1| - 8.4e-05 21.8 0.5 0.012 14.9 0.0 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding UPF0547 PF10571.4 gi|549454839|ref|YP_008603598.1| - 0.00014 21.4 4.8 0.00023 20.7 3.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.5 gi|549454839|ref|YP_008603598.1| - 0.0013 18.1 1.3 0.072 12.5 0.2 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain DUF35_N PF12172.3 gi|549454839|ref|YP_008603598.1| - 0.0038 17.0 0.7 0.0063 16.3 0.5 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|549454839|ref|YP_008603598.1| - 0.0083 16.0 2.7 2.9 7.9 2.8 2.2 1 1 1 2 2 2 1 Zinc ribbon domain zf-HYPF PF07503.7 gi|549454839|ref|YP_008603598.1| - 0.039 13.3 1.6 0.77 9.2 0.0 2.2 2 0 0 2 2 2 0 HypF finger HypA PF01155.14 gi|549454839|ref|YP_008603598.1| - 0.051 13.2 0.2 0.057 13.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|549454839|ref|YP_008603598.1| - 0.06 13.1 0.1 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C3HC4_3 PF13920.1 gi|549454839|ref|YP_008603598.1| - 0.079 12.6 0.8 0.11 12.1 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) NRDD PF13597.1 gi|549454839|ref|YP_008603598.1| - 0.1 10.6 0.2 0.12 10.4 0.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-NADH-PPase PF09297.6 gi|549454839|ref|YP_008603598.1| - 0.1 12.1 1.4 0.68 9.4 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|549454839|ref|YP_008603598.1| - 0.13 11.7 1.9 2.1 7.9 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|549454839|ref|YP_008603598.1| - 0.2 11.9 2.7 3.8 7.8 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar GFA PF04828.9 gi|549454839|ref|YP_008603598.1| - 0.22 11.4 1.4 2.3 8.1 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme NMD3 PF04981.8 gi|549454839|ref|YP_008603598.1| - 0.26 10.3 1.0 1.8 7.6 0.0 1.9 1 1 1 2 2 2 0 NMD3 family Prok-RING_1 PF14446.1 gi|549454839|ref|YP_008603598.1| - 0.37 10.5 2.8 1.3 8.8 1.9 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 RNA_POL_M_15KD PF02150.11 gi|549454839|ref|YP_008603598.1| - 0.4 10.4 2.0 11 5.8 0.1 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit RRN7 PF11781.3 gi|549454839|ref|YP_008603598.1| - 0.54 9.8 2.9 13 5.4 2.0 2.1 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-RING_3 PF14369.1 gi|549454839|ref|YP_008603598.1| - 0.62 10.1 3.4 13 5.9 3.0 2.1 1 1 1 2 2 2 0 zinc-finger OrfB_Zn_ribbon PF07282.6 gi|549454839|ref|YP_008603598.1| - 0.9 9.2 2.9 3.2 7.4 1.8 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|549454839|ref|YP_008603598.1| - 1.1 9.0 4.4 0.79 9.5 0.2 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-tcix PF14952.1 gi|549454839|ref|YP_008603598.1| - 1.9 7.8 8.0 2.9 7.2 3.4 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-IS66 PF13005.2 gi|549454839|ref|YP_008603598.1| - 2.1 8.3 5.1 2.3 8.2 0.3 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Auto_anti-p27 PF06677.7 gi|549454839|ref|YP_008603598.1| - 2.1 8.1 4.4 5.4 6.8 3.1 1.6 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1610 PF07754.6 gi|549454839|ref|YP_008603598.1| - 6.3 7.0 9.2 85 3.3 6.4 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) SHS2_Rpb7-N PF03876.12 gi|549454840|ref|YP_008603599.1| - 2.8e-12 46.5 0.0 4.6e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|549454840|ref|YP_008603599.1| - 1.7e-10 40.8 0.8 3.6e-10 39.7 0.5 1.5 1 0 0 1 1 1 1 S1 RNA binding domain Fer4_18 PF13746.1 gi|549454841|ref|YP_008603600.1| - 4.1e-06 27.1 0.5 4.7e-06 26.9 0.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|549454841|ref|YP_008603600.1| - 8.1e-06 25.7 0.2 9.7e-06 25.5 0.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|549454841|ref|YP_008603600.1| - 0.0001 21.7 3.6 0.00014 21.2 2.5 1.2 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|549454841|ref|YP_008603600.1| - 0.00014 22.0 0.6 0.00017 21.7 0.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|549454841|ref|YP_008603600.1| - 0.0002 21.0 0.1 0.0002 21.0 0.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|549454841|ref|YP_008603600.1| - 0.00038 20.7 0.1 0.00045 20.5 0.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|549454841|ref|YP_008603600.1| - 0.00041 20.6 0.3 0.00049 20.4 0.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|549454841|ref|YP_008603600.1| - 0.0005 19.8 0.4 0.00059 19.6 0.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|549454841|ref|YP_008603600.1| - 0.0023 17.7 2.8 0.0031 17.3 2.0 1.2 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|549454841|ref|YP_008603600.1| - 0.0038 17.6 5.0 0.0051 17.2 3.5 1.2 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|549454841|ref|YP_008603600.1| - 0.012 15.8 1.9 0.017 15.4 1.3 1.2 1 0 0 1 1 1 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|549454841|ref|YP_008603600.1| - 0.017 15.8 0.2 0.018 15.7 0.1 1.2 1 0 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|549454841|ref|YP_008603600.1| - 0.034 14.0 3.6 0.05 13.4 2.5 1.2 1 0 0 1 1 1 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|549454841|ref|YP_008603600.1| - 0.098 12.2 0.0 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF162 PF02589.10 gi|549454842|ref|YP_008603601.1| - 2.5e-56 190.1 0.3 4.4e-56 189.4 0.2 1.4 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 DHO_dh PF01180.16 gi|549454843|ref|YP_008603602.1| - 1.4e-48 165.3 0.0 1.6e-48 165.1 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|549454843|ref|YP_008603602.1| - 1e-05 24.5 0.1 5.4e-05 22.1 0.1 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|549454843|ref|YP_008603602.1| - 0.00072 18.8 0.7 0.048 12.9 0.0 2.6 3 0 0 3 3 3 1 Histidine biosynthesis protein PEP_mutase PF13714.1 gi|549454843|ref|YP_008603602.1| - 0.018 14.2 2.1 0.14 11.3 0.1 2.8 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase Phage_tail_X PF05489.7 gi|549454843|ref|YP_008603602.1| - 0.026 14.0 0.1 0.05 13.0 0.1 1.4 1 0 0 1 1 1 0 Phage Tail Protein X DUF561 PF04481.7 gi|549454843|ref|YP_008603602.1| - 0.03 13.2 1.5 1.6 7.5 0.7 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF561) IMPDH PF00478.20 gi|549454843|ref|YP_008603602.1| - 0.074 11.9 0.6 0.42 9.4 0.0 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|549454843|ref|YP_008603602.1| - 0.082 11.8 0.1 0.7 8.8 0.1 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|549454843|ref|YP_008603602.1| - 0.24 10.4 14.9 2.6 7.1 0.2 3.1 3 0 0 3 3 3 0 Nitronate monooxygenase Amidohydro_4 PF13147.1 gi|549454844|ref|YP_008603603.1| - 1.2e-14 54.9 7.4 1.9e-14 54.3 5.1 1.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|549454844|ref|YP_008603603.1| - 8.6e-06 25.6 0.0 1.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|549454844|ref|YP_008603603.1| - 0.00024 20.8 0.0 0.00068 19.4 0.0 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_2 PF04909.9 gi|549454844|ref|YP_008603603.1| - 0.046 13.2 0.1 0.073 12.6 0.0 1.4 1 0 0 1 1 1 0 Amidohydrolase RINGv PF12906.2 gi|549454844|ref|YP_008603603.1| - 0.053 13.5 0.5 0.11 12.6 0.4 1.4 1 0 0 1 1 1 0 RING-variant domain GDPD PF03009.12 gi|549454845|ref|YP_008603604.1| - 1.4e-10 41.1 0.0 4e-09 36.3 0.0 2.1 1 1 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|549454845|ref|YP_008603604.1| - 0.0055 16.8 1.0 0.015 15.4 0.1 2.1 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family EAL PF00563.15 gi|549454845|ref|YP_008603604.1| - 0.12 11.8 0.1 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 EAL domain Peptidase_S8 PF00082.17 gi|549454846|ref|YP_008603605.1| - 2.2e-54 184.5 9.0 3e-54 184.0 6.2 1.2 1 0 0 1 1 1 1 Subtilase family EF-hand_5 PF13202.1 gi|549454846|ref|YP_008603605.1| - 2.8 7.4 4.4 20 4.7 0.2 3.3 3 0 0 3 3 3 0 EF hand DUF131 PF01998.12 gi|549454847|ref|YP_008603606.1| - 1.3e-14 53.2 12.3 1.3e-14 53.2 8.5 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF872 PF05915.7 gi|549454847|ref|YP_008603606.1| - 0.067 13.0 7.4 0.058 13.2 4.5 1.3 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF1625 PF07787.7 gi|549454847|ref|YP_008603606.1| - 1.3 8.1 7.6 2.9 7.0 5.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1625) DUF2768 PF10966.3 gi|549454847|ref|YP_008603606.1| - 1.4 9.1 12.3 0.16 12.1 1.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2768) ABC2_membrane_4 PF12730.2 gi|549454847|ref|YP_008603606.1| - 2.2 7.4 11.6 2.6 7.1 8.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF751 PF05421.6 gi|549454847|ref|YP_008603606.1| - 4 7.7 6.9 1.6 9.0 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF751) BPD_transp_1 PF00528.17 gi|549454849|ref|YP_008603608.1| - 5e-18 65.2 15.8 5e-18 65.2 11.0 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|549454850|ref|YP_008603609.1| - 5.3e-15 55.6 0.0 5.9e-15 55.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF104 PF01954.11 gi|549454851|ref|YP_008603610.1| - 5e-18 64.8 1.1 5.6e-18 64.7 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF2674 PF10879.3 gi|549454851|ref|YP_008603610.1| - 0.00011 21.8 0.0 0.00013 21.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2674) Antitoxin-MazE PF04014.13 gi|549454851|ref|YP_008603610.1| - 0.0074 15.9 0.5 0.0091 15.7 0.4 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE GSH-S_ATP PF02955.11 gi|549454851|ref|YP_008603610.1| - 0.081 12.0 0.0 0.087 11.9 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain PIN PF01850.16 gi|549454852|ref|YP_008603611.1| - 4.5e-07 30.2 0.1 4.5e-07 30.2 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|549454852|ref|YP_008603611.1| - 0.011 16.3 0.0 0.012 16.3 0.0 1.1 1 0 0 1 1 1 0 PIN domain PIN PF01850.16 gi|549454853|ref|YP_008603612.1| - 6.5e-10 39.3 0.4 7e-10 39.2 0.3 1.0 1 0 0 1 1 1 1 PIN domain PPV_E2_N PF00508.12 gi|549454853|ref|YP_008603612.1| - 0.12 11.5 0.1 0.13 11.4 0.1 1.0 1 0 0 1 1 1 0 E2 (early) protein, N terminal DUF104 PF01954.11 gi|549454854|ref|YP_008603613.1| - 1.1e-16 60.6 2.8 1.4e-16 60.2 1.9 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF104 Asp_protease_2 PF13650.1 gi|549454855|ref|YP_008603614.1| - 6.2e-06 26.6 0.0 7.8e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|549454855|ref|YP_008603614.1| - 0.0029 17.4 0.0 0.0042 16.9 0.0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease gag-asp_proteas PF13975.1 gi|549454855|ref|YP_008603614.1| - 0.0075 16.0 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease PF09668.5 gi|549454855|ref|YP_008603614.1| - 0.016 14.7 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Aspartyl protease PIN PF01850.16 gi|549454857|ref|YP_008603616.1| - 4e-17 62.6 0.5 1.2e-16 61.1 0.4 1.6 1 1 0 1 1 1 1 PIN domain DUF3801 PF12687.2 gi|549454857|ref|YP_008603616.1| - 0.025 14.1 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) DUF104 PF01954.11 gi|549454858|ref|YP_008603617.1| - 5.2e-21 74.4 7.1 5.9e-21 74.2 4.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Curto_V2 PF07325.6 gi|549454858|ref|YP_008603617.1| - 0.043 13.4 0.4 0.044 13.4 0.3 1.2 1 0 0 1 1 1 0 Curtovirus V2 protein Antitoxin-MazE PF04014.13 gi|549454858|ref|YP_008603617.1| - 0.066 12.9 1.0 0.1 12.3 0.6 1.5 1 1 0 1 1 1 0 Antidote-toxin recognition MazE HTH_20 PF12840.2 gi|549454862|ref|YP_008603621.1| - 9.7e-15 54.1 0.6 1.9e-14 53.2 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|549454862|ref|YP_008603621.1| - 3.1e-08 33.2 0.6 3.1e-08 33.2 0.4 2.1 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_5 PF01022.15 gi|549454862|ref|YP_008603621.1| - 1e-07 31.4 1.4 9.3e-07 28.4 1.0 2.4 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.11 gi|549454862|ref|YP_008603621.1| - 9.9e-07 28.8 0.5 2.8e-06 27.4 0.2 1.7 2 0 0 2 2 2 1 Penicillinase repressor TBPIP PF07106.8 gi|549454862|ref|YP_008603621.1| - 0.00048 19.7 0.0 0.00073 19.1 0.0 1.3 1 1 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_24 PF13412.1 gi|549454862|ref|YP_008603621.1| - 0.0021 17.4 0.1 0.0069 15.7 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|549454862|ref|YP_008603621.1| - 0.0067 15.9 2.9 0.012 15.1 0.3 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain IF2_N PF04760.10 gi|549454862|ref|YP_008603621.1| - 0.02 14.5 0.6 0.49 10.0 0.2 2.6 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region FUR PF01475.14 gi|549454862|ref|YP_008603621.1| - 0.041 13.8 0.1 0.071 13.0 0.1 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family PqqD PF05402.7 gi|549454862|ref|YP_008603621.1| - 0.045 13.7 0.5 3 7.9 0.0 2.4 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Met_synt_B12 PF02965.12 gi|549454862|ref|YP_008603621.1| - 0.053 12.7 0.1 0.15 11.2 0.1 1.8 1 1 0 1 1 1 0 Vitamin B12 dependent methionine synthase, activation domain TrmB PF01978.14 gi|549454862|ref|YP_008603621.1| - 0.062 13.0 1.9 0.19 11.4 0.3 2.4 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PGP_phosphatase PF09419.5 gi|549454862|ref|YP_008603621.1| - 0.07 12.4 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase S10_plectin PF03501.10 gi|549454862|ref|YP_008603621.1| - 0.071 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Plectin/S10 domain DUF760 PF05542.6 gi|549454862|ref|YP_008603621.1| - 0.098 12.8 0.1 0.4 10.8 0.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF760) DIX PF00778.12 gi|549454862|ref|YP_008603621.1| - 0.098 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 DIX domain HTH_Tnp_Tc3_1 PF11427.3 gi|549454862|ref|YP_008603621.1| - 0.22 11.1 0.9 1.8 8.2 0.1 2.5 2 1 0 2 2 2 0 Tc3 transposase TFIIE_alpha PF02002.12 gi|549454862|ref|YP_008603621.1| - 0.26 10.8 2.7 0.19 11.2 0.8 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit Peptidase_MA_2 PF13485.1 gi|549454863|ref|YP_008603622.1| - 0.0062 16.5 0.2 0.015 15.3 0.1 1.6 1 0 0 1 1 1 1 Peptidase MA superfamily SecD-TM1 PF13721.1 gi|549454863|ref|YP_008603622.1| - 3.7 7.8 6.4 4 7.7 1.3 3.0 3 1 0 3 3 3 0 SecD export protein N-terminal TM region AhpC-TSA PF00578.16 gi|549454864|ref|YP_008603623.1| - 2.4e-37 127.3 0.0 3e-37 127.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|549454864|ref|YP_008603623.1| - 6.3e-26 90.6 0.0 7.7e-26 90.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|549454864|ref|YP_008603623.1| - 0.022 14.2 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Thioredoxin_8 PF13905.1 gi|549454864|ref|YP_008603623.1| - 0.05 13.7 0.0 0.09 12.9 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like ABC_transp_aux PF09822.4 gi|549454864|ref|YP_008603623.1| - 0.068 12.6 0.0 0.13 11.6 0.0 1.5 1 1 0 1 1 1 0 ABC-type uncharacterized transport system Lung_7-TM_R PF06814.8 gi|549454865|ref|YP_008603624.1| - 0.11 11.3 1.4 0.13 11.1 0.9 1.2 1 0 0 1 1 1 0 Lung seven transmembrane receptor DUF3995 PF13160.1 gi|549454865|ref|YP_008603624.1| - 0.52 10.3 10.0 0.17 11.9 5.2 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) DUF2207 PF09972.4 gi|549454865|ref|YP_008603624.1| - 0.6 8.6 4.1 0.61 8.6 2.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Bax1-I PF01027.15 gi|549454865|ref|YP_008603624.1| - 0.72 9.4 9.1 0.75 9.3 6.3 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF308 PF03729.8 gi|549454865|ref|YP_008603624.1| - 1 9.3 8.7 4 7.5 5.8 2.1 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF3487 PF11990.3 gi|549454865|ref|YP_008603624.1| - 1.5 8.2 7.8 0.47 9.8 3.6 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF2157 PF09925.4 gi|549454865|ref|YP_008603624.1| - 1.9 8.0 9.4 2.4 7.7 6.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) Phage_holin_1 PF04531.8 gi|549454865|ref|YP_008603624.1| - 2.8 8.0 4.7 1.9 8.5 2.3 1.6 1 1 1 2 2 2 0 Bacteriophage holin CopD PF05425.8 gi|549454865|ref|YP_008603624.1| - 6.3 7.0 14.1 36 4.6 9.9 1.8 1 1 0 1 1 1 0 Copper resistance protein D DUF485 PF04341.7 gi|549454865|ref|YP_008603624.1| - 8.7 6.1 12.6 1 9.0 0.6 2.6 1 1 2 3 3 3 0 Protein of unknown function, DUF485 HTH_5 PF01022.15 gi|549454866|ref|YP_008603625.1| - 7.1e-10 38.4 0.6 1e-09 37.8 0.4 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|549454866|ref|YP_008603625.1| - 1.1e-09 37.9 1.6 1.7e-09 37.3 1.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|549454866|ref|YP_008603625.1| - 9.3e-05 21.7 0.1 0.00014 21.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|549454866|ref|YP_008603625.1| - 0.00021 20.9 0.0 0.00029 20.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|549454866|ref|YP_008603625.1| - 0.00048 19.6 0.3 0.0011 18.5 0.2 1.6 1 1 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|549454866|ref|YP_008603625.1| - 0.00081 19.5 0.3 0.001 19.1 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn helix LexA_DNA_bind PF01726.11 gi|549454866|ref|YP_008603625.1| - 0.0052 16.3 0.1 0.012 15.1 0.1 1.7 1 1 0 1 1 1 1 LexA DNA binding domain HTH_11 PF08279.7 gi|549454866|ref|YP_008603625.1| - 0.0058 16.2 0.0 0.0094 15.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|549454866|ref|YP_008603625.1| - 0.0065 16.0 2.7 0.012 15.1 1.9 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|549454866|ref|YP_008603625.1| - 0.0066 16.1 0.3 0.01 15.4 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|549454866|ref|YP_008603625.1| - 0.012 15.4 0.0 0.013 15.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_28 PF13518.1 gi|549454866|ref|YP_008603625.1| - 0.035 14.1 0.3 0.092 12.7 0.3 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain DDE_Tnp_2 PF04693.7 gi|549454866|ref|YP_008603625.1| - 0.1 11.5 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Rrf2 PF02082.15 gi|549454866|ref|YP_008603625.1| - 0.11 12.6 0.3 0.21 11.6 0.2 1.6 1 1 1 2 2 2 0 Transcriptional regulator B-block_TFIIIC PF04182.7 gi|549454866|ref|YP_008603625.1| - 0.15 11.9 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Cupredoxin_1 PF13473.1 gi|549454867|ref|YP_008603626.1| - 2.2e-10 40.3 0.0 2.4e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|549454867|ref|YP_008603626.1| - 4.2e-05 23.6 0.0 7e-05 22.9 0.0 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SoxE PF06525.6 gi|549454867|ref|YP_008603626.1| - 0.011 15.0 0.1 0.27 10.5 0.0 2.6 2 1 0 3 3 3 0 Sulfocyanin (SoxE) Cu-oxidase_2 PF07731.9 gi|549454867|ref|YP_008603626.1| - 0.024 14.1 0.0 0.046 13.2 0.0 1.5 1 1 0 1 1 1 0 Multicopper oxidase COX2 PF00116.15 gi|549454867|ref|YP_008603626.1| - 0.039 13.7 0.0 0.055 13.2 0.0 1.2 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, periplasmic domain DUF1573 PF07610.6 gi|549454867|ref|YP_008603626.1| - 0.042 13.4 1.4 0.31 10.6 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1573) A2M_N_2 PF07703.9 gi|549454867|ref|YP_008603626.1| - 0.062 13.1 0.0 2.8 7.7 0.0 2.3 1 1 1 2 2 2 0 Alpha-2-macroglobulin family N-terminal region HTH_20 PF12840.2 gi|549454870|ref|YP_008603629.1| - 0.00036 20.2 6.3 0.00048 19.8 2.4 2.2 1 1 0 2 2 2 1 Helix-turn-helix domain HTH_41 PF14502.1 gi|549454870|ref|YP_008603629.1| - 0.058 13.0 3.5 0.49 10.0 0.1 3.0 3 1 1 4 4 4 0 Helix-turn-helix domain DUF479 PF04336.7 gi|549454870|ref|YP_008603629.1| - 0.13 12.3 0.4 0.89 9.6 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF479 Ribosomal_S19e PF01090.14 gi|549454870|ref|YP_008603629.1| - 0.39 10.1 2.7 0.22 10.9 0.4 1.7 2 1 0 2 2 2 0 Ribosomal protein S19e HTH_12 PF08461.5 gi|549454870|ref|YP_008603629.1| - 0.66 9.7 6.5 0.16 11.7 2.1 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Sugarporin_N PF11471.3 gi|549454870|ref|YP_008603629.1| - 0.85 9.3 4.5 0.68 9.6 1.8 1.8 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension HTH_30 PF13556.1 gi|549454870|ref|YP_008603629.1| - 0.89 9.1 7.4 1.3 8.6 0.0 3.1 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain FGGY_C PF02782.11 gi|549454872|ref|YP_008603631.1| - 3.1e-21 75.9 1.0 4.9e-21 75.2 0.7 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.16 gi|549454872|ref|YP_008603631.1| - 2.4e-05 23.7 0.0 3.9e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FAD-oxidase_C PF02913.14 gi|549454873|ref|YP_008603632.1| - 1.4e-35 122.8 0.0 2.3e-35 122.1 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|549454873|ref|YP_008603632.1| - 5.9e-29 100.3 3.6 6.1e-29 100.2 0.4 2.4 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|549454874|ref|YP_008603633.1| - 4.5e-37 127.7 3.9 5.3e-37 127.5 2.7 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|549454874|ref|YP_008603633.1| - 1.8e-06 27.2 0.8 0.00025 20.1 0.6 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|549454874|ref|YP_008603633.1| - 5e-06 25.6 0.7 8.6e-06 24.8 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|549454874|ref|YP_008603633.1| - 8.6e-05 21.6 1.0 0.26 10.1 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox PF00070.22 gi|549454874|ref|YP_008603633.1| - 0.00023 21.5 1.3 0.00048 20.4 0.9 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|549454874|ref|YP_008603633.1| - 0.00024 21.0 0.1 0.00057 19.8 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|549454874|ref|YP_008603633.1| - 0.00028 20.8 0.1 0.00047 20.1 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|549454874|ref|YP_008603633.1| - 0.00083 17.9 0.5 0.0013 17.2 0.4 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_oxidored PF12831.2 gi|549454874|ref|YP_008603633.1| - 0.0031 16.6 1.9 0.0053 15.8 1.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|549454874|ref|YP_008603633.1| - 0.0031 17.1 0.5 0.0065 16.1 0.3 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|549454874|ref|YP_008603633.1| - 0.0043 16.4 0.2 0.013 14.9 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|549454874|ref|YP_008603633.1| - 0.023 13.7 0.6 0.023 13.7 0.4 2.3 3 0 0 3 3 3 0 Thi4 family NAD_binding_9 PF13454.1 gi|549454874|ref|YP_008603633.1| - 0.044 13.5 0.1 0.38 10.4 0.0 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|549454874|ref|YP_008603633.1| - 0.046 13.7 0.0 0.17 11.9 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|549454874|ref|YP_008603633.1| - 0.15 12.3 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding GIDA PF01134.17 gi|549454874|ref|YP_008603633.1| - 0.39 9.5 1.3 0.54 9.0 0.9 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Acyl-CoA_dh_1 PF00441.19 gi|549454875|ref|YP_008603634.1| - 2.2e-27 95.9 3.3 2.2e-27 95.9 2.3 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|549454875|ref|YP_008603634.1| - 8.4e-19 68.2 0.9 2.2e-18 66.8 0.7 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|549454875|ref|YP_008603634.1| - 1.4e-15 56.4 0.0 1.7e-14 53.0 0.0 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|549454875|ref|YP_008603634.1| - 5e-13 49.4 0.8 5e-13 49.4 0.5 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain MaoC_dehydratas PF01575.14 gi|549454876|ref|YP_008603635.1| - 3.3e-12 45.8 0.0 4.3e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|549454876|ref|YP_008603635.1| - 1.1e-11 44.5 0.0 2e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase AcetylCoA_hyd_C PF13336.1 gi|549454877|ref|YP_008603636.1| - 6.1e-32 110.4 0.0 8.5e-32 109.9 0.0 1.2 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|549454877|ref|YP_008603636.1| - 3.3e-14 53.1 0.0 4.8e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain CitF PF04223.7 gi|549454877|ref|YP_008603636.1| - 0.00016 20.5 0.1 0.00025 19.8 0.0 1.2 1 0 0 1 1 1 1 Citrate lyase, alpha subunit (CitF) HpcH_HpaI PF03328.9 gi|549454878|ref|YP_008603637.1| - 1.4e-32 112.4 0.0 4.2e-31 107.5 0.0 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|549454878|ref|YP_008603637.1| - 3.6e-16 58.9 0.0 4e-11 42.3 0.0 2.3 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold UPF0066 PF01980.11 gi|549454879|ref|YP_008603638.1| - 1.9e-36 124.6 0.0 2.6e-36 124.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Peptidase_M55 PF04951.8 gi|549454880|ref|YP_008603639.1| - 6.6e-79 264.8 0.0 7.9e-79 264.6 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Arginase PF00491.16 gi|549454881|ref|YP_008603640.1| - 2e-72 243.7 0.0 2.5e-72 243.5 0.0 1.0 1 0 0 1 1 1 1 Arginase family PGM_PMM_I PF02878.11 gi|549454882|ref|YP_008603641.1| - 4e-44 149.4 0.0 8.2e-44 148.4 0.0 1.6 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|549454882|ref|YP_008603641.1| - 1.2e-19 70.4 0.0 3.6e-19 69.0 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|549454882|ref|YP_008603641.1| - 1.2e-15 57.4 0.0 2.1e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|549454882|ref|YP_008603641.1| - 5.9e-14 51.8 0.8 1.4e-13 50.6 0.3 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DJ-1_PfpI PF01965.19 gi|549454883|ref|YP_008603642.1| - 2.1e-41 140.8 0.0 2.4e-41 140.6 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|549454883|ref|YP_008603642.1| - 2.1e-13 49.8 0.0 2.5e-13 49.6 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|549454883|ref|YP_008603642.1| - 0.00035 20.0 0.0 0.00042 19.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|549454883|ref|YP_008603642.1| - 0.019 14.5 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.1 gi|549454883|ref|YP_008603642.1| - 0.074 11.9 0.0 0.14 11.0 0.0 1.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|549454883|ref|YP_008603642.1| - 0.14 11.5 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 Fer4 PF00037.22 gi|549454884|ref|YP_008603643.1| - 8.5e-11 40.9 16.9 2.3e-09 36.4 3.3 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|549454884|ref|YP_008603643.1| - 1.2e-09 38.3 9.1 2.4e-09 37.4 5.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|549454884|ref|YP_008603643.1| - 6.6e-09 35.5 9.9 8.7e-09 35.1 6.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|549454884|ref|YP_008603643.1| - 3.6e-08 34.0 9.5 2e-05 25.2 1.3 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|549454884|ref|YP_008603643.1| - 7e-08 32.0 4.1 7e-08 32.0 2.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|549454884|ref|YP_008603643.1| - 7e-08 32.9 10.7 7e-08 32.9 7.4 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|549454884|ref|YP_008603643.1| - 1.3e-07 31.7 10.0 2.7e-07 30.7 6.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|549454884|ref|YP_008603643.1| - 2.6e-07 30.1 9.5 8.8e-07 28.4 3.0 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|549454884|ref|YP_008603643.1| - 2.9e-07 30.1 9.1 2.9e-07 30.1 6.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|549454884|ref|YP_008603643.1| - 9.4e-06 25.4 5.1 7.8e-05 22.5 0.5 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|549454884|ref|YP_008603643.1| - 1.7e-05 25.0 14.4 0.00039 20.7 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|549454884|ref|YP_008603643.1| - 0.00032 20.6 9.8 0.0013 18.7 6.8 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|549454884|ref|YP_008603643.1| - 0.00038 20.5 13.1 0.0009 19.3 2.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|549454884|ref|YP_008603643.1| - 0.001 19.4 15.9 0.0024 18.2 9.5 2.4 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|549454884|ref|YP_008603643.1| - 0.0025 18.1 1.0 0.0025 18.1 0.7 2.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|549454884|ref|YP_008603643.1| - 0.013 15.8 11.9 0.024 14.9 1.7 2.4 1 1 3 4 4 4 0 4Fe-4S dicluster domain PqqD PF05402.7 gi|549454885|ref|YP_008603644.1| - 0.007 16.3 2.2 0.51 10.3 0.0 2.6 2 1 1 3 3 3 2 Coenzyme PQQ synthesis protein D (PqqD) WD40_alt PF14077.1 gi|549454885|ref|YP_008603644.1| - 0.011 15.3 1.3 0.025 14.2 0.9 1.6 1 0 0 1 1 1 0 Alternative WD40 repeat motif Nif11 PF07862.6 gi|549454885|ref|YP_008603644.1| - 0.027 14.4 0.3 6.3 6.8 0.0 2.6 2 1 0 2 2 2 0 Nitrogen fixation protein of unknown function Mis14 PF08641.7 gi|549454885|ref|YP_008603644.1| - 0.13 12.3 0.1 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Kinetochore protein Mis14 like Helicase_C_2 PF13307.1 gi|549454886|ref|YP_008603645.1| - 2.3e-21 76.4 0.0 4.2e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|549454886|ref|YP_008603645.1| - 5e-19 68.3 0.0 7.3e-19 67.8 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|549454886|ref|YP_008603645.1| - 0.00046 19.7 0.0 0.0072 15.8 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|549454886|ref|YP_008603645.1| - 0.0085 15.9 0.0 0.058 13.2 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit TIP49 PF06068.8 gi|549454888|ref|YP_008603647.1| - 3.6e-161 536.3 0.2 4.6e-161 536.0 0.1 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|549454888|ref|YP_008603647.1| - 7.8e-11 42.2 0.1 3.2e-08 33.8 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|549454888|ref|YP_008603647.1| - 4.7e-09 36.4 3.1 9.9e-06 25.6 0.0 2.9 3 0 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|549454888|ref|YP_008603647.1| - 1.5e-08 34.8 0.0 0.0077 16.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|549454888|ref|YP_008603647.1| - 5.9e-07 28.7 3.1 1.6e-05 24.1 0.0 2.9 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|549454888|ref|YP_008603647.1| - 1.2e-05 26.0 0.3 0.0001 23.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|549454888|ref|YP_008603647.1| - 1.3e-05 24.8 0.1 4.1e-05 23.2 0.1 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|549454888|ref|YP_008603647.1| - 4e-05 23.9 0.1 0.00021 21.6 0.0 2.3 3 0 0 3 3 1 1 AAA domain IstB_IS21 PF01695.12 gi|549454888|ref|YP_008603647.1| - 0.0003 20.2 0.1 0.00064 19.1 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|549454888|ref|YP_008603647.1| - 0.00041 19.7 0.1 0.0013 18.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|549454888|ref|YP_008603647.1| - 0.00087 18.4 0.2 0.002 17.2 0.0 1.7 2 0 0 2 2 1 1 Zeta toxin AAA_5 PF07728.9 gi|549454888|ref|YP_008603647.1| - 0.0016 18.1 0.1 0.0087 15.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|549454888|ref|YP_008603647.1| - 0.0016 18.3 0.1 0.01 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|549454888|ref|YP_008603647.1| - 0.002 17.6 0.0 0.0071 15.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|549454888|ref|YP_008603647.1| - 0.0041 16.7 0.0 0.02 14.5 0.0 2.0 2 0 0 2 2 2 1 NACHT domain Mg_chelatase PF01078.16 gi|549454888|ref|YP_008603647.1| - 0.0042 16.2 0.6 0.01 15.0 0.1 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|549454888|ref|YP_008603647.1| - 0.0043 16.0 0.0 0.019 13.9 0.0 1.9 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|549454888|ref|YP_008603647.1| - 0.0088 16.0 0.3 0.025 14.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|549454888|ref|YP_008603647.1| - 0.024 13.8 0.0 0.047 12.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein KaiC PF06745.8 gi|549454888|ref|YP_008603647.1| - 0.026 13.6 0.0 0.052 12.6 0.0 1.5 1 0 0 1 1 1 0 KaiC IPT PF01745.11 gi|549454888|ref|YP_008603647.1| - 0.028 13.5 0.0 0.071 12.2 0.0 1.6 1 0 0 1 1 1 0 Isopentenyl transferase AAA_11 PF13086.1 gi|549454888|ref|YP_008603647.1| - 0.033 13.7 0.0 0.059 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|549454888|ref|YP_008603647.1| - 0.038 13.8 0.0 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_24 PF13479.1 gi|549454888|ref|YP_008603647.1| - 0.039 13.5 0.0 0.14 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|549454888|ref|YP_008603647.1| - 0.041 13.3 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_32 PF13654.1 gi|549454888|ref|YP_008603647.1| - 0.049 12.2 1.3 1.7 7.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|549454888|ref|YP_008603647.1| - 0.078 12.8 0.0 0.62 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|549454888|ref|YP_008603647.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|549454888|ref|YP_008603647.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 ABC transporter DUF4349 PF14257.1 gi|549454889|ref|YP_008603648.1| - 0.017 14.3 1.9 0.12 11.5 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) MAP65_ASE1 PF03999.7 gi|549454889|ref|YP_008603648.1| - 0.059 11.9 0.1 0.092 11.3 0.1 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) DUF1192 PF06698.6 gi|549454889|ref|YP_008603648.1| - 0.1 12.4 4.3 13 5.7 0.1 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF1192) Pox_A_type_inc PF04508.7 gi|549454889|ref|YP_008603648.1| - 5.5 7.0 7.6 1.1 9.1 0.1 3.1 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat Lactamase_B PF00753.22 gi|549454890|ref|YP_008603649.1| - 5.7e-21 75.0 3.5 9e-21 74.4 2.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|549454890|ref|YP_008603649.1| - 0.00047 19.7 0.0 0.00093 18.7 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain dUTPase PF00692.14 gi|549454891|ref|YP_008603650.1| - 4.3e-15 55.3 0.0 5.7e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|549454891|ref|YP_008603650.1| - 9.6e-05 20.9 0.0 0.0016 16.9 0.0 2.9 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF4203 PF13886.1 gi|549454892|ref|YP_008603651.1| - 0.32 10.4 3.6 0.44 9.9 0.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4203) Polysacc_synt_C PF14667.1 gi|549454892|ref|YP_008603651.1| - 1 9.1 9.5 3.5 7.4 6.6 2.0 1 1 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain CopD PF05425.8 gi|549454892|ref|YP_008603651.1| - 1.7 8.8 9.9 0.38 10.9 4.3 1.7 2 0 0 2 2 2 0 Copper resistance protein D Penicil_amidase PF01804.13 gi|549454893|ref|YP_008603652.1| - 4.2e-126 422.8 0.0 5.5e-126 422.4 0.0 1.1 1 0 0 1 1 1 1 Penicillin amidase Peptidase_M19 PF01244.16 gi|549454894|ref|YP_008603653.1| - 1.7e-67 227.6 0.0 1.9e-67 227.4 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|549454894|ref|YP_008603653.1| - 7.4e-05 22.4 0.0 0.00017 21.2 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase TSNR_N PF04705.7 gi|549454894|ref|YP_008603653.1| - 0.15 11.8 0.0 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 Thiostrepton-resistance methylase, N terminus Beta-lactamase PF00144.19 gi|549454895|ref|YP_008603654.1| - 3.3e-58 197.2 0.5 4.5e-58 196.8 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.1 gi|549454895|ref|YP_008603654.1| - 5.3e-25 87.3 0.0 1.7e-24 85.7 0.0 1.9 2 0 0 2 2 2 1 Pab87 octamerisation domain DUF377 PF04041.8 gi|549454896|ref|YP_008603655.1| - 1.3e-87 293.4 0.0 1.6e-87 293.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF377) GHL6 PF14871.1 gi|549454897|ref|YP_008603656.1| - 4.5e-41 139.9 0.0 1.1e-40 138.7 0.0 1.7 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 Glyco_hydro_42M PF08532.5 gi|549454897|ref|YP_008603656.1| - 0.00011 21.4 0.1 0.00028 20.1 0.1 1.7 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain ThuA PF06283.6 gi|549454897|ref|YP_008603656.1| - 0.0011 18.7 0.0 0.0027 17.4 0.0 1.6 1 0 0 1 1 1 1 Trehalose utilisation DUF4159 PF13709.1 gi|549454897|ref|YP_008603656.1| - 0.021 13.9 0.0 0.04 13.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) PHP PF02811.14 gi|549454897|ref|YP_008603656.1| - 0.1 12.3 0.0 0.38 10.5 0.0 1.9 2 0 0 2 2 2 0 PHP domain ABC_transp_aux PF09822.4 gi|549454897|ref|YP_008603656.1| - 0.22 10.9 0.0 0.35 10.2 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system 4HBT PF03061.17 gi|549454898|ref|YP_008603657.1| - 1.1e-14 54.2 3.1 7.5e-09 35.6 0.7 2.4 2 0 0 2 2 2 2 Thioesterase superfamily Ribosomal_L18e PF00828.14 gi|549454899|ref|YP_008603658.1| - 2.6e-32 111.8 0.5 3.3e-32 111.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|549454900|ref|YP_008603659.1| - 1.2e-13 50.3 0.0 2.1e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|549454901|ref|YP_008603660.1| - 2.3e-25 88.0 2.2 2.3e-25 88.0 1.5 1.9 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|549454901|ref|YP_008603660.1| - 2.9e-24 84.1 0.0 5.1e-24 83.3 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|549454902|ref|YP_008603661.1| - 4.6e-34 117.1 0.1 6.6e-34 116.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|549454902|ref|YP_008603661.1| - 6e-13 49.1 0.0 1.1e-12 48.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|549454903|ref|YP_008603662.1| - 4.8e-51 172.4 8.1 5.3e-51 172.2 5.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e MEDS PF14417.1 gi|549454903|ref|YP_008603662.1| - 0.018 14.1 0.0 0.021 13.8 0.0 1.2 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HTH_17 PF12728.2 gi|549454903|ref|YP_008603662.1| - 0.2 11.9 4.4 10 6.4 0.2 3.3 3 2 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|549454904|ref|YP_008603663.1| - 5.5e-34 116.5 0.3 7.8e-34 116.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|549454905|ref|YP_008603664.1| - 2.1e-31 108.2 5.6 5.7e-15 55.5 1.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF1108 PF06531.6 gi|549454905|ref|YP_008603664.1| - 0.54 10.4 3.1 5 7.3 0.1 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF1108) Ribosomal_S8 PF00410.14 gi|549454906|ref|YP_008603665.1| - 5.5e-30 103.8 0.0 7.1e-30 103.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 DUF498 PF04430.9 gi|549454906|ref|YP_008603665.1| - 0.13 11.7 0.0 1.6 8.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) Ribosomal_S14 PF00253.16 gi|549454907|ref|YP_008603666.1| - 4.7e-17 61.1 5.0 5.2e-17 60.9 3.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|549454907|ref|YP_008603666.1| - 0.0016 18.0 2.8 0.0028 17.2 1.9 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|549454907|ref|YP_008603666.1| - 0.022 14.5 1.3 0.033 14.0 0.9 1.3 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|549454907|ref|YP_008603666.1| - 0.025 14.4 0.2 0.029 14.2 0.2 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family Zn_Tnp_IS91 PF14319.1 gi|549454907|ref|YP_008603666.1| - 0.081 12.4 0.3 0.083 12.3 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn_Tnp_IS1595 PF12760.2 gi|549454907|ref|YP_008603666.1| - 0.12 12.1 3.3 0.15 11.8 2.3 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|549454907|ref|YP_008603666.1| - 0.13 11.7 1.0 0.16 11.4 0.7 1.1 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-CCHC_3 PF13917.1 gi|549454907|ref|YP_008603666.1| - 0.23 11.2 0.3 0.23 11.2 0.2 2.1 2 0 0 2 2 2 0 Zinc knuckle UPF0547 PF10571.4 gi|549454907|ref|YP_008603666.1| - 0.24 11.1 1.4 1 9.1 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|549454907|ref|YP_008603666.1| - 0.67 9.4 4.5 3.1 7.3 0.5 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L5_C PF00673.16 gi|549454908|ref|YP_008603667.1| - 6.1e-25 86.7 0.0 1.1e-24 85.9 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|549454908|ref|YP_008603667.1| - 9.1e-21 73.4 0.7 1e-19 70.0 0.1 2.2 2 0 0 2 2 2 1 Ribosomal protein L5 V-SNARE_C PF12352.3 gi|549454908|ref|YP_008603667.1| - 0.026 14.5 0.0 0.054 13.5 0.0 1.5 1 0 0 1 1 1 0 Snare region anchored in the vesicle membrane C-terminus Ribosomal_S4e PF00900.15 gi|549454909|ref|YP_008603668.1| - 9.1e-29 98.9 0.0 1.5e-28 98.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|549454909|ref|YP_008603668.1| - 1.6e-16 59.8 3.8 3.2e-16 58.8 2.6 1.6 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|549454909|ref|YP_008603668.1| - 2.4e-14 52.5 0.3 9.1e-14 50.6 0.0 2.1 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|549454909|ref|YP_008603668.1| - 0.0052 16.4 2.6 0.016 14.9 1.8 1.9 1 0 0 1 1 1 1 KOW motif KOW PF00467.24 gi|549454910|ref|YP_008603669.1| - 1.7e-09 37.0 2.1 3.7e-09 35.9 1.5 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.14 gi|549454911|ref|YP_008603670.1| - 4.9e-39 132.8 0.0 6e-39 132.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.6 gi|549454911|ref|YP_008603670.1| - 0.056 13.5 0.1 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 PAS fold Ribosomal_S17 PF00366.15 gi|549454912|ref|YP_008603671.1| - 4.1e-22 77.9 2.5 5.2e-22 77.6 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|549454913|ref|YP_008603672.1| - 2.1e-16 59.3 0.0 2.8e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|549454914|ref|YP_008603673.1| - 2.3e-21 75.2 3.4 2.8e-21 74.9 2.4 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.15 gi|549454915|ref|YP_008603674.1| - 1.9e-19 69.6 0.2 4.7e-19 68.3 0.1 1.7 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|549454915|ref|YP_008603674.1| - 2.1e-11 43.2 0.9 1.2e-10 40.7 0.0 2.5 3 1 0 3 3 3 1 KH domain KH_1 PF00013.24 gi|549454915|ref|YP_008603674.1| - 0.0012 18.4 2.5 0.004 16.7 0.0 2.7 3 0 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|549454915|ref|YP_008603674.1| - 0.0025 17.4 0.6 0.015 14.9 0.0 2.6 3 1 0 3 3 3 1 KH domain KH_4 PF13083.1 gi|549454915|ref|YP_008603674.1| - 0.0037 16.8 0.0 0.011 15.3 0.0 1.9 1 0 0 1 1 1 1 KH domain Ribosomal_L22 PF00237.14 gi|549454916|ref|YP_008603675.1| - 3.5e-35 120.1 0.6 4.1e-35 119.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|549454917|ref|YP_008603676.1| - 3.3e-28 97.1 0.1 4.3e-28 96.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 FA PF08736.6 gi|549454917|ref|YP_008603676.1| - 0.14 11.9 2.8 0.27 11.0 0.1 2.2 2 0 0 2 2 2 0 FERM adjacent (FA) VWA_CoxE PF05762.9 gi|549454918|ref|YP_008603677.1| - 2.2e-44 151.2 2.7 4.6e-44 150.1 1.9 1.6 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein CoA_binding_2 PF13380.1 gi|549454918|ref|YP_008603677.1| - 0.11 12.7 0.1 0.54 10.4 0.1 2.3 1 1 0 1 1 1 0 CoA binding domain AAA_5 PF07728.9 gi|549454919|ref|YP_008603678.1| - 3.1e-19 69.0 0.0 5.4e-19 68.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|549454919|ref|YP_008603678.1| - 2.6e-05 24.5 0.0 4.7e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|549454919|ref|YP_008603678.1| - 0.00019 21.6 0.1 0.0013 18.8 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|549454919|ref|YP_008603678.1| - 0.00066 19.2 0.0 0.04 13.5 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|549454919|ref|YP_008603678.1| - 0.0017 17.8 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|549454919|ref|YP_008603678.1| - 0.0039 16.8 0.0 0.012 15.3 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|549454919|ref|YP_008603678.1| - 0.0074 16.3 0.0 0.098 12.7 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|549454919|ref|YP_008603678.1| - 0.0079 15.3 0.0 0.51 9.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|549454919|ref|YP_008603678.1| - 0.014 14.2 1.3 0.11 11.3 0.2 2.2 2 1 1 3 3 3 0 MCM2/3/5 family AAA_16 PF13191.1 gi|549454919|ref|YP_008603678.1| - 0.016 15.1 0.0 0.027 14.4 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|549454919|ref|YP_008603678.1| - 0.017 14.7 0.0 0.053 13.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|549454919|ref|YP_008603678.1| - 0.028 13.1 0.0 0.066 11.9 0.0 1.6 2 0 0 2 2 2 0 TIP49 C-terminus AAA_17 PF13207.1 gi|549454919|ref|YP_008603678.1| - 0.028 15.2 1.0 0.095 13.5 0.5 2.1 1 1 0 1 1 1 0 AAA domain Mg_chelatase_2 PF13335.1 gi|549454919|ref|YP_008603678.1| - 0.043 14.1 0.5 0.13 12.7 0.3 1.9 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|549454919|ref|YP_008603678.1| - 0.078 13.1 0.1 0.77 9.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_2 PF07724.9 gi|549454919|ref|YP_008603678.1| - 0.1 12.5 0.0 0.35 10.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_11 PF13086.1 gi|549454919|ref|YP_008603678.1| - 0.11 12.0 0.0 0.25 10.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|549454919|ref|YP_008603678.1| - 0.12 12.0 0.2 0.44 10.2 0.0 2.1 2 1 0 3 3 3 0 NACHT domain IstB_IS21 PF01695.12 gi|549454919|ref|YP_008603678.1| - 0.14 11.5 0.0 0.37 10.1 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein PDDEXK_1 PF12705.2 gi|549454920|ref|YP_008603679.1| - 3.5e-17 62.6 0.1 5e-12 45.7 0.0 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|549454920|ref|YP_008603679.1| - 5.3e-06 26.4 0.0 7e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 tRNA-synt_1 PF00133.17 gi|549454921|ref|YP_008603680.1| - 5.1e-182 606.0 0.0 7.1e-182 605.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|549454921|ref|YP_008603680.1| - 1.1e-31 109.6 1.4 2.2e-31 108.6 1.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|549454921|ref|YP_008603680.1| - 1.9e-26 92.6 0.6 5.2e-09 35.2 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|549454921|ref|YP_008603680.1| - 0.0015 17.7 0.0 0.065 12.3 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|549454921|ref|YP_008603680.1| - 0.0019 16.9 0.0 0.011 14.3 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) zf-ribbon_3 PF13248.1 gi|549454921|ref|YP_008603680.1| - 0.057 12.6 0.6 0.55 9.5 0.1 2.6 2 1 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|549454921|ref|YP_008603680.1| - 0.22 10.7 3.2 13 5.0 0.1 3.5 3 0 0 3 3 3 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|549454921|ref|YP_008603680.1| - 0.43 10.5 4.0 0.34 10.8 0.1 2.7 3 0 0 3 3 3 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|549454921|ref|YP_008603680.1| - 1.2 9.2 4.5 1.8 8.5 0.1 3.2 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-FPG_IleRS PF06827.9 gi|549454921|ref|YP_008603680.1| - 8.7 6.0 13.1 1.9 8.1 0.4 3.3 4 0 0 4 4 4 0 Zinc finger found in FPG and IleRS ACT PF01842.20 gi|549454923|ref|YP_008603682.1| - 6.2e-09 35.1 0.1 1.2e-08 34.2 0.1 1.5 1 0 0 1 1 1 1 ACT domain Antitoxin-MazE PF04014.13 gi|549454923|ref|YP_008603682.1| - 1.6e-06 27.6 0.3 2.6e-06 27.0 0.2 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ACT_6 PF13740.1 gi|549454923|ref|YP_008603682.1| - 1.1e-05 24.9 0.0 2.4e-05 23.9 0.0 1.6 1 1 0 1 1 1 1 ACT domain MraZ PF02381.13 gi|549454923|ref|YP_008603682.1| - 3.5e-05 23.4 0.0 6.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 MraZ protein ACT_4 PF13291.1 gi|549454923|ref|YP_008603682.1| - 0.029 14.7 0.0 0.049 13.9 0.0 1.4 1 0 0 1 1 1 0 ACT domain CDC48_N PF02359.13 gi|549454923|ref|YP_008603682.1| - 0.082 12.8 0.1 0.97 9.4 0.0 2.1 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain ACT_7 PF13840.1 gi|549454923|ref|YP_008603682.1| - 0.14 11.7 0.3 0.27 10.7 0.0 1.7 2 0 0 2 2 2 0 ACT domain Lactamase_B PF00753.22 gi|549454925|ref|YP_008603684.1| - 2.5e-12 46.8 0.0 3e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily CBS PF00571.23 gi|549454926|ref|YP_008603685.1| - 1.7e-36 123.7 2.8 3.1e-18 65.2 0.4 2.1 2 0 0 2 2 2 2 CBS domain DUF1129 PF06570.6 gi|549454927|ref|YP_008603686.1| - 2.6 7.2 9.0 0.17 11.1 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Acyl-CoA_dh_1 PF00441.19 gi|549454928|ref|YP_008603687.1| - 6.5e-38 130.1 1.5 1.3e-37 129.2 1.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|549454928|ref|YP_008603687.1| - 6.6e-15 54.3 1.4 1.3e-14 53.4 1.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|549454928|ref|YP_008603687.1| - 2.9e-08 34.0 3.0 4.8e-08 33.3 0.3 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acetyltransf_1 PF00583.19 gi|549454929|ref|YP_008603688.1| - 7.9e-13 48.2 0.5 1.1e-12 47.7 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|549454929|ref|YP_008603688.1| - 8e-13 48.5 0.0 9.6e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|549454929|ref|YP_008603688.1| - 7.2e-11 42.0 0.2 1e-10 41.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|549454929|ref|YP_008603688.1| - 9.3e-09 35.4 0.1 1.1e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|549454929|ref|YP_008603688.1| - 3.5e-08 33.3 0.1 4.4e-08 33.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|549454929|ref|YP_008603688.1| - 5.6e-07 29.2 0.0 8.1e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|549454929|ref|YP_008603688.1| - 0.00063 19.5 0.0 0.00097 18.9 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|549454929|ref|YP_008603688.1| - 0.0047 16.5 0.1 0.0064 16.0 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|549454929|ref|YP_008603688.1| - 0.0062 16.7 0.0 0.0071 16.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|549454930|ref|YP_008603689.1| - 8.7e-16 57.7 0.8 8.7e-16 57.7 0.6 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|549454930|ref|YP_008603689.1| - 1.3e-10 41.4 0.1 1.5e-10 41.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|549454930|ref|YP_008603689.1| - 6.1e-10 39.1 0.1 1e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|549454930|ref|YP_008603689.1| - 6.3e-08 32.2 0.1 1e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|549454930|ref|YP_008603689.1| - 9.4e-07 28.7 0.0 1.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|549454930|ref|YP_008603689.1| - 4.3e-05 23.7 0.0 4.8e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|549454930|ref|YP_008603689.1| - 0.00077 19.4 0.0 0.00089 19.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|549454930|ref|YP_008603689.1| - 0.0034 17.2 0.0 0.0047 16.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|549454930|ref|YP_008603689.1| - 0.014 15.2 0.1 0.038 13.8 0.0 1.7 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|549454930|ref|YP_008603689.1| - 0.017 14.7 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Malic_M PF03949.10 gi|549454931|ref|YP_008603690.1| - 1.2e-67 228.1 0.0 1.5e-67 227.8 0.0 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|549454931|ref|YP_008603690.1| - 7.7e-20 71.2 0.0 2.9e-14 53.0 0.0 2.5 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain AMP-binding PF00501.23 gi|549454932|ref|YP_008603691.1| - 3.5e-92 308.9 0.1 4.6e-92 308.5 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|549454932|ref|YP_008603691.1| - 3.8e-18 66.2 0.1 1.3e-17 64.4 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain FeoA PF04023.9 gi|549454933|ref|YP_008603692.1| - 0.049 13.5 0.1 0.091 12.7 0.1 1.5 1 0 0 1 1 1 0 FeoA domain AA_kinase PF00696.23 gi|549454934|ref|YP_008603693.1| - 3.9e-23 82.2 0.0 4.9e-23 81.9 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Claudin_2 PF13903.1 gi|549454935|ref|YP_008603694.1| - 0.042 13.5 0.7 0.042 13.5 0.5 2.0 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction MnhB PF04039.8 gi|549454935|ref|YP_008603694.1| - 0.048 13.7 4.0 0.051 13.6 2.8 1.1 1 0 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter DUF2721 PF11026.3 gi|549454935|ref|YP_008603694.1| - 4.9 6.7 7.0 16 5.1 4.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) ATP-synt_D PF01813.12 gi|549454936|ref|YP_008603695.1| - 7.1e-46 156.2 4.9 8.1e-46 156.0 3.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D CorA PF01544.13 gi|549454936|ref|YP_008603695.1| - 0.35 9.8 5.6 1.5 7.8 0.7 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein GPAT_N PF14829.1 gi|549454936|ref|YP_008603695.1| - 0.71 9.5 2.9 1.6 8.4 0.5 2.5 2 1 1 3 3 3 0 Glycerol-3-phosphate acyltransferase N-terminal ATP-synt_ab PF00006.20 gi|549454937|ref|YP_008603696.1| - 3.1e-62 209.8 0.0 4e-62 209.5 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|549454937|ref|YP_008603696.1| - 1.7e-18 67.1 0.4 3.3e-18 66.1 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|549454937|ref|YP_008603696.1| - 6e-11 42.4 4.3 1.5e-10 41.0 3.0 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|549454937|ref|YP_008603696.1| - 0.012 15.4 1.3 0.034 14.0 0.9 1.8 1 0 0 1 1 1 0 HAS barrel domain CCDC66 PF15236.1 gi|549454937|ref|YP_008603696.1| - 0.11 12.1 0.8 0.27 10.8 0.6 1.6 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 66 ATP-synt_ab PF00006.20 gi|549454938|ref|YP_008603697.1| - 3e-95 317.7 0.0 4.2e-95 317.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|549454938|ref|YP_008603697.1| - 1.2e-19 70.8 1.4 2.2e-19 69.9 1.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|549454938|ref|YP_008603697.1| - 4.5e-14 52.4 1.1 1.2e-13 51.0 0.7 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_19 PF13245.1 gi|549454938|ref|YP_008603697.1| - 0.01 15.5 0.1 0.39 10.5 0.0 2.9 3 0 0 3 3 3 0 Part of AAA domain AAA_22 PF13401.1 gi|549454938|ref|YP_008603697.1| - 0.087 12.9 0.5 0.37 10.9 0.0 2.2 3 0 0 3 3 3 0 AAA domain vATP-synt_E PF01991.13 gi|549454939|ref|YP_008603698.1| - 6.1e-09 35.4 8.3 1.9e-08 33.8 5.7 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF883 PF05957.8 gi|549454939|ref|YP_008603698.1| - 0.058 13.8 9.1 0.29 11.5 5.3 2.3 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) GvpL_GvpF PF06386.6 gi|549454939|ref|YP_008603698.1| - 0.093 12.2 3.9 0.13 11.8 2.7 1.3 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF Pex19 PF04614.7 gi|549454939|ref|YP_008603698.1| - 0.1 12.1 0.5 0.15 11.6 0.3 1.2 1 1 0 1 1 1 0 Pex19 protein family ATP-synt_B PF00430.13 gi|549454939|ref|YP_008603698.1| - 0.18 11.6 8.1 0.38 10.5 5.4 1.7 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) Sds3 PF08598.6 gi|549454939|ref|YP_008603698.1| - 0.49 9.9 4.5 0.69 9.3 2.6 1.5 1 1 0 1 1 1 0 Sds3-like L27_1 PF09058.5 gi|549454939|ref|YP_008603698.1| - 1.4 8.8 6.4 3.8 7.4 0.5 3.5 2 1 2 4 4 4 0 L27_1 ATP-synt_F PF01990.12 gi|549454940|ref|YP_008603699.1| - 3.2e-05 24.2 0.1 3.6e-05 24.0 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Pyridoxal_deC PF00282.14 gi|549454941|ref|YP_008603700.1| - 2.2e-15 55.9 0.0 6.6e-15 54.4 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|549454941|ref|YP_008603700.1| - 1.4e-08 33.9 0.0 2.1e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|549454941|ref|YP_008603700.1| - 0.002 17.3 0.0 0.0025 16.9 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Cas_DxTHG PF09455.5 gi|549454942|ref|YP_008603701.1| - 9e-11 41.5 0.0 1e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Holin_LLH PF09682.5 gi|549454943|ref|YP_008603702.1| - 0.0087 16.1 0.2 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 Phage holin protein (Holin_LLH) RPA_C PF08784.6 gi|549454943|ref|YP_008603702.1| - 0.031 14.7 0.0 0.049 14.0 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal RHH_1 PF01402.16 gi|549454944|ref|YP_008603703.1| - 8.3e-12 44.4 0.3 1.1e-11 44.0 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|549454944|ref|YP_008603703.1| - 0.0066 16.1 0.2 0.0091 15.7 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain RepB-RCR_reg PF10723.4 gi|549454944|ref|YP_008603703.1| - 0.013 15.1 0.1 0.015 15.0 0.1 1.1 1 0 0 1 1 1 0 Replication regulatory protein RepB Methyltransf_31 PF13847.1 gi|549454944|ref|YP_008603703.1| - 0.042 13.4 0.0 0.042 13.4 0.0 1.0 1 0 0 1 1 1 0 Methyltransferase domain DUF1778 PF08681.6 gi|549454944|ref|YP_008603703.1| - 0.061 13.1 0.1 0.073 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) DUF2296 PF10058.4 gi|549454946|ref|YP_008603705.1| - 7.8e-05 22.3 0.7 7.8e-05 22.3 0.5 1.8 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) DZR PF12773.2 gi|549454946|ref|YP_008603705.1| - 0.001 18.8 3.9 0.035 13.9 1.7 2.2 1 1 1 2 2 2 2 Double zinc ribbon zf-BED PF02892.10 gi|549454946|ref|YP_008603705.1| - 0.0012 18.5 0.1 0.35 10.6 0.0 2.4 2 0 0 2 2 2 1 BED zinc finger Desulfoferrod_N PF06397.7 gi|549454946|ref|YP_008603705.1| - 0.0016 17.8 1.7 0.31 10.4 0.0 2.9 3 0 0 3 3 3 1 Desulfoferrodoxin, N-terminal domain zf-H2C2_2 PF13465.1 gi|549454946|ref|YP_008603705.1| - 0.014 15.6 3.8 5.7 7.4 0.2 3.2 3 0 0 3 3 3 0 Zinc-finger double domain zf-AN1 PF01428.11 gi|549454946|ref|YP_008603705.1| - 0.017 15.0 2.1 6.1 6.8 0.2 3.0 3 0 0 3 3 3 0 AN1-like Zinc finger Elf1 PF05129.8 gi|549454946|ref|YP_008603705.1| - 0.017 14.8 3.5 4.6 7.0 0.1 3.0 1 1 1 3 3 3 0 Transcription elongation factor Elf1 like zf-Sec23_Sec24 PF04810.10 gi|549454946|ref|YP_008603705.1| - 0.017 14.6 12.5 0.091 12.3 2.5 2.7 2 1 0 2 2 2 0 Sec23/Sec24 zinc finger Zn-ribbon_8 PF09723.5 gi|549454946|ref|YP_008603705.1| - 0.027 14.4 6.9 0.11 12.5 3.1 2.4 2 1 0 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|549454946|ref|YP_008603705.1| - 0.038 13.6 1.5 0.91 9.2 1.0 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|549454946|ref|YP_008603705.1| - 0.043 13.7 4.3 3.5 7.6 0.0 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|549454946|ref|YP_008603705.1| - 0.055 12.7 7.2 0.2 11.0 2.4 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|549454946|ref|YP_008603705.1| - 0.058 13.2 6.2 3.8 7.4 2.0 2.9 2 1 0 2 2 2 0 Rubredoxin zf-ISL3 PF14690.1 gi|549454946|ref|YP_008603705.1| - 0.07 13.1 6.2 6.1 6.9 0.0 3.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Di19 PF05605.7 gi|549454946|ref|YP_008603705.1| - 0.073 13.2 4.0 1.1 9.4 0.1 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Ribosomal_S27e PF01667.12 gi|549454946|ref|YP_008603705.1| - 0.1 12.1 5.8 1.2 8.7 0.2 2.8 2 1 1 3 3 3 0 Ribosomal protein S27 DUF678 PF05077.7 gi|549454946|ref|YP_008603705.1| - 0.13 12.2 0.6 2.2 8.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Zn_ribbon_recom PF13408.1 gi|549454946|ref|YP_008603705.1| - 0.13 12.5 4.4 3.7 7.8 1.8 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_2 PF13240.1 gi|549454946|ref|YP_008603705.1| - 0.15 11.6 6.5 0.93 9.0 0.0 3.2 2 1 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|549454946|ref|YP_008603705.1| - 0.16 12.4 6.3 7.3 7.1 0.1 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger zf-HIT PF04438.11 gi|549454946|ref|YP_008603705.1| - 0.16 11.6 14.0 4 7.1 1.2 3.2 2 1 1 3 3 3 0 HIT zinc finger DUF983 PF06170.7 gi|549454946|ref|YP_008603705.1| - 0.16 12.0 1.3 18 5.5 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF983) zf-CHY PF05495.7 gi|549454946|ref|YP_008603705.1| - 0.19 11.9 2.0 3.1 8.0 1.4 2.2 1 1 0 1 1 1 0 CHY zinc finger FYVE PF01363.16 gi|549454946|ref|YP_008603705.1| - 0.2 11.5 3.4 5.6 6.9 0.5 2.2 2 0 0 2 2 2 0 FYVE zinc finger zf-ribbon_3 PF13248.1 gi|549454946|ref|YP_008603705.1| - 0.22 10.7 8.8 0.8 8.9 0.1 3.3 3 1 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|549454946|ref|YP_008603705.1| - 0.22 11.8 9.0 0.32 11.3 0.1 3.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar SprT-like PF10263.4 gi|549454946|ref|YP_008603705.1| - 0.24 11.0 2.3 0.46 10.1 1.6 1.6 1 1 0 1 1 1 0 SprT-like family zf-B_box PF00643.19 gi|549454946|ref|YP_008603705.1| - 0.26 11.2 2.7 3.7 7.5 1.1 2.6 2 1 0 2 2 2 0 B-box zinc finger zf-C2HC5 PF06221.8 gi|549454946|ref|YP_008603705.1| - 0.26 11.0 2.3 0.65 9.7 0.7 2.1 2 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type C1_4 PF07975.7 gi|549454946|ref|YP_008603705.1| - 0.33 10.9 5.1 86 3.2 4.1 2.8 1 1 1 2 2 2 0 TFIIH C1-like domain Zn_Tnp_IS1 PF03811.8 gi|549454946|ref|YP_008603705.1| - 0.36 10.3 11.7 6 6.4 0.3 3.3 2 1 1 3 3 3 0 InsA N-terminal domain DUF35_N PF12172.3 gi|549454946|ref|YP_008603705.1| - 0.39 10.7 6.2 13 5.8 0.0 3.2 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_ligase_ZBD PF03119.11 gi|549454946|ref|YP_008603705.1| - 0.4 10.4 0.2 0.4 10.4 0.2 2.8 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-LITAF-like PF10601.4 gi|549454946|ref|YP_008603705.1| - 0.59 10.0 3.6 15 5.5 1.3 2.8 2 1 0 2 2 2 0 LITAF-like zinc ribbon domain DUF1272 PF06906.6 gi|549454946|ref|YP_008603705.1| - 0.62 9.9 5.5 9.8 6.1 3.8 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-RING_5 PF14634.1 gi|549454946|ref|YP_008603705.1| - 0.63 9.8 5.4 7.1 6.4 2.4 2.8 2 1 0 2 2 2 0 zinc-RING finger domain DUF329 PF03884.9 gi|549454946|ref|YP_008603705.1| - 0.66 9.5 3.2 23 4.6 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF329) UPF0515 PF15135.1 gi|549454946|ref|YP_008603705.1| - 0.74 8.8 2.9 0.86 8.6 2.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 Zn_Tnp_IS1595 PF12760.2 gi|549454946|ref|YP_008603705.1| - 0.75 9.6 11.2 3.5 7.5 0.2 2.9 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|549454946|ref|YP_008603705.1| - 0.87 9.2 11.8 0.23 11.1 2.3 3.1 3 1 0 3 3 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_4 PF13717.1 gi|549454946|ref|YP_008603705.1| - 1 9.1 8.1 9.5 6.0 0.1 3.1 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|549454946|ref|YP_008603705.1| - 1 9.0 7.9 9.7 5.8 0.1 3.1 2 1 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|549454946|ref|YP_008603705.1| - 1 8.4 9.0 3.7 6.6 0.0 2.9 2 1 0 2 2 2 0 Mu-like prophage protein Com zf-C3HC4_3 PF13920.1 gi|549454946|ref|YP_008603705.1| - 1.5 8.5 8.1 35 4.1 5.6 2.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.4 gi|549454946|ref|YP_008603705.1| - 1.7 8.4 9.6 5.8 6.6 0.2 3.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|549454946|ref|YP_008603705.1| - 1.9 8.7 0.1 1.9 8.7 0.1 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) DNA_RNApol_7kD PF03604.8 gi|549454946|ref|YP_008603705.1| - 2.4 7.6 8.8 7 6.2 0.2 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_3 PF14369.1 gi|549454946|ref|YP_008603705.1| - 4.9 7.2 7.8 14 5.8 0.7 2.6 2 2 0 2 2 2 0 zinc-finger zf-C2H2 PF00096.21 gi|549454946|ref|YP_008603705.1| - 5.5 7.5 6.3 27 5.3 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-HYPF PF07503.7 gi|549454946|ref|YP_008603705.1| - 8.2 5.9 8.1 5.5 6.5 0.7 3.0 3 0 0 3 3 3 0 HypF finger ATP_bind_4 PF01902.12 gi|549454948|ref|YP_008603707.1| - 1.2e-49 168.6 0.0 1.4e-49 168.3 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region ThiI PF02568.9 gi|549454948|ref|YP_008603707.1| - 0.00041 19.8 0.1 0.00066 19.1 0.0 1.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|549454948|ref|YP_008603707.1| - 0.052 12.8 0.0 0.087 12.0 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Asp_Glu_race PF01177.17 gi|549454948|ref|YP_008603707.1| - 0.092 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase TatD_DNase PF01026.16 gi|549454949|ref|YP_008603708.1| - 6.4e-45 153.3 0.0 7.5e-45 153.1 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|549454949|ref|YP_008603708.1| - 0.066 12.7 1.2 0.097 12.2 0.8 1.3 1 0 0 1 1 1 0 Amidohydrolase Thia_YuaJ PF09515.5 gi|549454950|ref|YP_008603709.1| - 0.1 12.3 5.4 0.15 11.8 3.8 1.2 1 0 0 1 1 1 0 Thiamine transporter protein (Thia_YuaJ) Potass_KdpF PF09604.5 gi|549454950|ref|YP_008603709.1| - 5.9 6.8 14.3 1.8 8.5 2.9 2.7 2 0 0 2 2 2 0 F subunit of K+-transporting ATPase (Potass_KdpF) Glycos_transf_2 PF00535.21 gi|549454952|ref|YP_008603711.1| - 1.3e-28 99.7 0.0 1.8e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|549454952|ref|YP_008603711.1| - 2.9e-19 69.1 6.8 5.1e-19 68.3 4.7 1.4 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.1 gi|549454952|ref|YP_008603711.1| - 1.3e-13 51.3 0.0 2.1e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|549454952|ref|YP_008603711.1| - 0.16 10.9 0.0 0.23 10.5 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 UDG PF03167.14 gi|549454953|ref|YP_008603712.1| - 2.8e-40 137.2 0.0 3.6e-40 136.8 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Lon_C PF05362.8 gi|549454954|ref|YP_008603713.1| - 0.0049 16.1 0.1 0.0098 15.2 0.1 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain MIT PF04212.13 gi|549454954|ref|YP_008603713.1| - 0.0059 16.4 0.1 0.054 13.3 0.0 2.7 3 0 0 3 3 3 1 MIT (microtubule interacting and transport) domain TPR_14 PF13428.1 gi|549454954|ref|YP_008603713.1| - 0.048 14.3 5.2 11 7.0 0.0 4.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|549454954|ref|YP_008603713.1| - 0.072 12.9 0.1 36 4.4 0.0 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat IstB_IS21 PF01695.12 gi|549454956|ref|YP_008603715.1| - 5.3e-07 29.2 0.0 8.5e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|549454956|ref|YP_008603715.1| - 1e-06 28.2 0.1 0.00018 20.9 0.0 2.3 1 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|549454956|ref|YP_008603715.1| - 0.0012 18.9 0.0 0.002 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|549454956|ref|YP_008603715.1| - 0.0015 18.1 0.0 0.0024 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|549454956|ref|YP_008603715.1| - 0.0064 16.6 0.1 0.0083 16.3 0.1 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|549454956|ref|YP_008603715.1| - 0.017 15.0 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|549454956|ref|YP_008603715.1| - 0.017 14.2 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|549454956|ref|YP_008603715.1| - 0.034 13.3 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|549454956|ref|YP_008603715.1| - 0.045 13.7 0.0 0.073 13.1 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|549454956|ref|YP_008603715.1| - 0.047 13.4 0.1 0.088 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|549454956|ref|YP_008603715.1| - 0.068 12.9 0.0 0.3 10.8 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain RNA_helicase PF00910.17 gi|549454956|ref|YP_008603715.1| - 0.072 13.2 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.21 gi|549454956|ref|YP_008603715.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|549454956|ref|YP_008603715.1| - 0.18 11.5 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 NTPase KaiC PF06745.8 gi|549454956|ref|YP_008603715.1| - 0.18 10.9 0.0 1.6 7.8 0.0 1.9 2 0 0 2 2 2 0 KaiC DUF46 PF01864.12 gi|549454957|ref|YP_008603716.1| - 1.7e-41 142.0 3.9 6.4e-41 140.1 2.7 1.7 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|549454957|ref|YP_008603716.1| - 2.3e-07 30.7 2.1 2.3e-07 30.7 1.5 1.8 1 1 0 1 1 1 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.1 gi|549454957|ref|YP_008603716.1| - 0.82 9.2 9.3 0.16 11.5 3.5 2.1 2 1 0 2 2 2 0 YMGG-like Gly-zipper EIF_2_alpha PF07541.7 gi|549454958|ref|YP_008603717.1| - 2.4e-26 91.7 0.1 4.4e-26 90.8 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|549454958|ref|YP_008603717.1| - 8e-15 54.6 0.2 1.5e-14 53.8 0.2 1.5 1 0 0 1 1 1 1 S1 RNA binding domain Lsr2 PF11774.3 gi|549454958|ref|YP_008603717.1| - 0.012 15.4 0.1 0.029 14.2 0.1 1.7 1 0 0 1 1 1 0 Lsr2 Ribosomal_S10 PF00338.17 gi|549454958|ref|YP_008603717.1| - 0.05 13.4 0.3 0.34 10.7 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein S10p/S20e DUF2870 PF11069.3 gi|549454958|ref|YP_008603717.1| - 0.08 12.9 0.5 0.18 11.8 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2870) HTH_15 PF12324.3 gi|549454958|ref|YP_008603717.1| - 0.15 11.7 0.5 4.1 7.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain of alkylmercury lyase Ribosomal_S27e PF01667.12 gi|549454959|ref|YP_008603718.1| - 4.9e-21 74.0 0.5 5.5e-21 73.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|549454959|ref|YP_008603718.1| - 1.5e-05 23.9 0.8 0.026 13.7 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|549454959|ref|YP_008603718.1| - 1.8e-05 23.9 1.4 2.4e-05 23.5 1.0 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|549454959|ref|YP_008603718.1| - 0.0013 18.9 0.2 0.0019 18.4 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar TFIIS_C PF01096.13 gi|549454959|ref|YP_008603718.1| - 0.0015 18.1 3.0 0.075 12.6 2.1 2.1 1 1 0 1 1 1 1 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|549454959|ref|YP_008603718.1| - 0.0045 16.5 0.8 0.84 9.2 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|549454959|ref|YP_008603718.1| - 0.0053 16.5 1.2 0.0084 15.8 0.8 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|549454959|ref|YP_008603718.1| - 0.0057 16.1 4.0 0.014 14.8 2.8 1.7 1 1 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.3 gi|549454959|ref|YP_008603718.1| - 0.019 14.8 2.1 4.2 7.4 0.2 2.4 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|549454959|ref|YP_008603718.1| - 0.021 14.5 0.1 0.028 14.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PADR1 PF08063.7 gi|549454959|ref|YP_008603718.1| - 0.038 13.3 1.3 0.054 12.8 0.2 1.7 1 1 1 2 2 2 0 PADR1 (NUC008) domain OrfB_Zn_ribbon PF07282.6 gi|549454959|ref|YP_008603718.1| - 0.054 13.1 1.3 0.078 12.6 0.9 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|549454959|ref|YP_008603718.1| - 0.054 13.1 3.8 1.5 8.5 0.4 2.4 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|549454959|ref|YP_008603718.1| - 0.07 12.9 1.2 0.14 11.9 0.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|549454959|ref|YP_008603718.1| - 0.089 12.7 2.4 1.3 9.0 0.2 2.1 1 1 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|549454959|ref|YP_008603718.1| - 0.09 12.2 0.2 0.11 12.0 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain CpXC PF14353.1 gi|549454959|ref|YP_008603718.1| - 0.12 12.3 1.8 3.8 7.5 0.1 2.0 1 1 1 2 2 2 0 CpXC protein DUF3797 PF12677.2 gi|549454959|ref|YP_008603718.1| - 0.19 11.3 3.8 1.8 8.2 2.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-RING_3 PF14369.1 gi|549454959|ref|YP_008603718.1| - 0.23 11.5 1.6 0.83 9.6 0.1 2.0 1 1 1 2 2 2 0 zinc-finger Sgf11 PF08209.6 gi|549454959|ref|YP_008603718.1| - 0.24 10.7 1.8 4.8 6.5 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C4_Topoisom PF01396.14 gi|549454959|ref|YP_008603718.1| - 0.26 10.8 3.2 0.32 10.5 0.3 2.0 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-CCHC PF00098.18 gi|549454959|ref|YP_008603718.1| - 0.47 10.4 3.6 12 6.0 0.1 2.2 2 0 0 2 2 2 0 Zinc knuckle DNA_ligase_ZBD PF03119.11 gi|549454959|ref|YP_008603718.1| - 0.7 9.6 4.6 8.7 6.1 0.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain RNA_POL_M_15KD PF02150.11 gi|549454959|ref|YP_008603718.1| - 1.1 9.0 3.4 12 5.6 0.8 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ISL3 PF14690.1 gi|549454959|ref|YP_008603718.1| - 5.4 7.1 9.7 0.49 10.4 2.3 2.4 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L44 PF00935.14 gi|549454960|ref|YP_008603719.1| - 3.8e-28 97.2 6.2 5.8e-28 96.7 4.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.15 gi|549454960|ref|YP_008603719.1| - 0.033 14.4 0.8 0.033 14.4 0.6 2.7 2 1 1 3 3 3 0 Ribosomal protein L33 DUF3395 PF11875.3 gi|549454960|ref|YP_008603719.1| - 0.057 13.0 0.2 0.063 12.9 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3395) zinc_ribbon_2 PF13240.1 gi|549454960|ref|YP_008603719.1| - 0.29 10.6 1.8 12 5.5 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|549454960|ref|YP_008603719.1| - 0.52 9.9 3.5 6.6 6.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|549454960|ref|YP_008603719.1| - 0.63 9.7 3.7 9 6.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rpr2 PF04032.11 gi|549454960|ref|YP_008603719.1| - 1.4 8.8 5.7 3.9 7.4 3.9 1.7 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Tnp_zf-ribbon_2 PF13842.1 gi|549454960|ref|YP_008603719.1| - 3.3 8.2 6.7 5.8 7.4 0.5 2.5 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-HIT PF04438.11 gi|549454960|ref|YP_008603719.1| - 4.3 7.0 6.4 11 5.7 1.2 2.3 2 0 0 2 2 2 0 HIT zinc finger DNA_primase_S PF01896.14 gi|549454962|ref|YP_008603721.1| - 2.9e-16 59.5 0.0 5e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit PCNA_N PF00705.13 gi|549454963|ref|YP_008603722.1| - 1.1e-12 47.5 0.0 9.9e-12 44.4 0.0 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|549454963|ref|YP_008603722.1| - 7.9e-05 22.5 0.0 0.00016 21.5 0.0 1.6 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|549454963|ref|YP_008603722.1| - 0.00059 19.0 0.0 0.00083 18.5 0.0 1.3 1 1 0 1 1 1 1 Rad9 HrpB1_HrpK PF09613.5 gi|549454964|ref|YP_008603723.1| - 0.14 11.6 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) TFIIS_C PF01096.13 gi|549454965|ref|YP_008603724.1| - 2.7e-22 78.0 13.0 2.7e-21 74.9 4.0 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|549454965|ref|YP_008603724.1| - 4.4e-09 35.9 9.7 1.7e-05 24.4 1.1 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|549454965|ref|YP_008603724.1| - 1.1e-07 31.4 0.4 1.1e-07 31.4 0.3 3.0 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|549454965|ref|YP_008603724.1| - 2.3e-05 23.6 8.4 0.025 13.8 0.3 2.9 2 2 0 2 2 2 2 TFIIB zinc-binding DUF2387 PF09526.5 gi|549454965|ref|YP_008603724.1| - 2.6e-05 24.0 2.2 0.011 15.6 0.0 2.4 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.6 gi|549454965|ref|YP_008603724.1| - 3.9e-05 23.2 7.8 0.018 14.6 0.5 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.2 gi|549454965|ref|YP_008603724.1| - 6.3e-05 22.7 5.6 0.012 15.3 0.2 2.7 2 1 0 2 2 2 2 Double zinc ribbon IBR PF01485.16 gi|549454965|ref|YP_008603724.1| - 0.00015 21.6 2.5 0.079 12.8 0.1 3.0 3 0 0 3 3 3 1 IBR domain zinc_ribbon_2 PF13240.1 gi|549454965|ref|YP_008603724.1| - 0.00065 19.0 12.6 0.029 13.8 0.1 3.8 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|549454965|ref|YP_008603724.1| - 0.001 18.5 7.3 1.8 8.1 0.0 4.1 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|549454965|ref|YP_008603724.1| - 0.0017 18.0 7.7 2.1 8.0 0.0 4.2 4 0 0 4 4 4 2 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|549454965|ref|YP_008603724.1| - 0.0018 18.5 8.9 0.12 12.7 0.8 2.8 1 1 2 3 3 3 3 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|549454965|ref|YP_008603724.1| - 0.0045 16.1 15.7 0.17 11.1 3.5 3.5 3 1 1 4 4 4 2 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|549454965|ref|YP_008603724.1| - 0.0053 16.9 14.3 0.51 10.6 1.1 3.0 2 1 0 2 2 2 2 Recombinase zinc beta ribbon domain DUF2082 PF09855.4 gi|549454965|ref|YP_008603724.1| - 0.0054 16.5 10.3 2.5 8.0 0.3 4.0 3 1 1 4 4 4 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) A2L_zn_ribbon PF08792.5 gi|549454965|ref|YP_008603724.1| - 0.0097 15.3 9.7 2.2 7.8 0.1 3.9 4 0 0 4 4 4 1 A2L zinc ribbon domain zf-TFIIB PF13453.1 gi|549454965|ref|YP_008603724.1| - 0.013 14.6 12.5 0.032 13.4 0.6 2.6 2 1 0 2 2 2 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|549454965|ref|YP_008603724.1| - 0.024 14.3 14.1 0.57 9.9 0.2 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|549454965|ref|YP_008603724.1| - 0.036 13.8 7.2 0.71 9.7 0.2 3.1 2 1 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|549454965|ref|YP_008603724.1| - 0.038 13.9 12.0 2 8.4 0.0 4.2 4 0 0 4 4 4 0 Zinc ribbon domain Baculo_LEF5_C PF11792.3 gi|549454965|ref|YP_008603724.1| - 0.064 12.6 0.3 0.064 12.6 0.2 3.0 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-DNA_Pol PF08996.5 gi|549454965|ref|YP_008603724.1| - 0.1 11.9 1.1 0.17 11.2 0.1 1.8 2 0 0 2 2 2 0 DNA Polymerase alpha zinc finger Cys_rich_CPCC PF14206.1 gi|549454965|ref|YP_008603724.1| - 0.11 12.0 0.1 0.11 12.0 0.1 2.3 2 1 0 2 2 2 0 Cysteine-rich CPCC DUF1178 PF06676.6 gi|549454965|ref|YP_008603724.1| - 0.13 12.4 1.2 0.33 11.1 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1178) DUF3797 PF12677.2 gi|549454965|ref|YP_008603724.1| - 0.13 11.9 4.0 6.2 6.5 0.0 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF3797) zf-NADH-PPase PF09297.6 gi|549454965|ref|YP_008603724.1| - 0.17 11.4 16.5 0.3 10.6 4.3 3.7 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.14 gi|549454965|ref|YP_008603724.1| - 0.21 11.2 6.1 0.34 10.6 0.2 2.9 1 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family DNA_ligase_ZBD PF03119.11 gi|549454965|ref|YP_008603724.1| - 0.23 11.2 2.8 6.8 6.4 0.0 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1 PF03811.8 gi|549454965|ref|YP_008603724.1| - 0.23 10.9 0.1 0.23 10.9 0.1 3.7 3 1 0 3 3 3 0 InsA N-terminal domain zf-ZPR1 PF03367.8 gi|549454965|ref|YP_008603724.1| - 0.24 10.5 3.8 1.2 8.2 0.0 2.6 1 1 2 3 3 3 0 ZPR1 zinc-finger domain Rubredoxin PF00301.15 gi|549454965|ref|YP_008603724.1| - 0.26 11.1 12.6 9.3 6.2 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin Terminase_GpA PF05876.7 gi|549454965|ref|YP_008603724.1| - 0.29 9.4 6.6 0.032 12.6 1.4 1.7 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) RecR PF02132.10 gi|549454965|ref|YP_008603724.1| - 0.33 10.4 7.1 0.5 9.8 0.0 3.6 4 0 0 4 4 4 0 RecR protein FdhE PF04216.7 gi|549454965|ref|YP_008603724.1| - 0.42 10.2 7.3 0.61 9.7 0.2 2.1 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation zf-C4_Topoisom PF01396.14 gi|549454965|ref|YP_008603724.1| - 0.69 9.4 10.2 4.8 6.7 2.0 3.1 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Ribosomal_L32p PF01783.18 gi|549454965|ref|YP_008603724.1| - 0.69 10.1 3.9 34 4.7 0.9 3.6 3 1 0 3 3 3 0 Ribosomal L32p protein family SprT-like PF10263.4 gi|549454965|ref|YP_008603724.1| - 0.83 9.2 5.2 3.2 7.3 3.6 1.8 1 1 0 1 1 1 0 SprT-like family NOB1_Zn_bind PF08772.6 gi|549454965|ref|YP_008603724.1| - 0.89 9.4 7.8 9.4 6.1 0.1 3.6 3 1 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.1 gi|549454965|ref|YP_008603724.1| - 1.4 8.7 14.6 10 5.8 4.0 3.8 3 1 0 3 3 3 0 Nudix N-terminal zf-Mss51 PF13824.1 gi|549454965|ref|YP_008603724.1| - 1.6 8.6 9.5 12 5.8 1.3 3.1 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Opy2 PF09463.5 gi|549454965|ref|YP_008603724.1| - 1.7 8.8 5.7 3.7 7.7 0.0 3.4 4 0 0 4 4 4 0 Opy2 protein zf-MYND PF01753.13 gi|549454965|ref|YP_008603724.1| - 2 8.3 9.1 6.7 6.6 0.7 3.2 2 2 0 2 2 2 0 MYND finger Ribosomal_S27e PF01667.12 gi|549454965|ref|YP_008603724.1| - 2.2 7.9 0.0 2.2 7.9 0.0 2.8 3 1 0 3 3 2 0 Ribosomal protein S27 C1_1 PF00130.17 gi|549454965|ref|YP_008603724.1| - 2.5 7.8 6.8 2.1 8.1 0.1 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS91 PF14319.1 gi|549454965|ref|YP_008603724.1| - 2.9 7.4 9.8 2 7.9 0.2 3.3 2 2 1 3 3 3 0 Transposase zinc-binding domain DUF164 PF02591.10 gi|549454965|ref|YP_008603724.1| - 3 7.7 7.5 11 5.8 0.1 3.5 4 0 0 4 4 4 0 Putative zinc ribbon domain GFA PF04828.9 gi|549454965|ref|YP_008603724.1| - 3.1 7.7 10.8 1.4 8.9 0.1 3.4 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DUF1451 PF07295.6 gi|549454965|ref|YP_008603724.1| - 6.1 6.6 6.5 32 4.2 0.0 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF1451) zf-tcix PF14952.1 gi|549454965|ref|YP_008603724.1| - 7.5 5.9 14.2 4 6.8 2.4 3.1 3 1 0 3 3 2 0 Putative treble-clef, zinc-finger, Zn-binding NMD3 PF04981.8 gi|549454965|ref|YP_008603724.1| - 8.6 5.3 7.3 2.9e+02 0.4 5.0 2.6 1 1 0 1 1 1 0 NMD3 family zf-trcl PF13451.1 gi|549454965|ref|YP_008603724.1| - 8.7 6.0 15.3 9.7 5.9 0.0 3.2 3 1 0 3 3 2 0 Probable zinc-binding domain K_channel_TID PF07941.6 gi|549454966|ref|YP_008603725.1| - 0.1 12.8 0.4 0.1 12.8 0.3 2.4 2 1 1 3 3 3 0 Potassium channel Kv1.4 tandem inactivation domain RNA_pol_L_2 PF13656.1 gi|549454967|ref|YP_008603726.1| - 1.4e-18 66.0 0.1 1.6e-18 65.8 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|549454967|ref|YP_008603726.1| - 0.027 13.6 0.0 0.063 12.3 0.0 1.6 1 1 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF1447 PF07288.6 gi|549454967|ref|YP_008603726.1| - 0.069 12.9 1.7 0.4 10.5 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1447) DUF2067 PF09840.4 gi|549454968|ref|YP_008603727.1| - 8e-57 191.8 0.0 9.1e-57 191.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) DUF1266 PF06889.6 gi|549454968|ref|YP_008603727.1| - 0.015 15.0 0.0 0.17 11.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1266) CbbQ_C PF08406.5 gi|549454968|ref|YP_008603727.1| - 0.019 14.9 1.2 0.032 14.2 0.3 1.7 2 0 0 2 2 2 0 CbbQ/NirQ/NorQ C-terminal ECR1_N PF14382.1 gi|549454969|ref|YP_008603728.1| - 6.9e-09 34.8 0.7 5.2e-08 32.0 0.0 2.3 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region OrfB_Zn_ribbon PF07282.6 gi|549454969|ref|YP_008603728.1| - 4.5e-05 23.0 0.5 7.3e-05 22.3 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|549454969|ref|YP_008603728.1| - 0.00035 19.9 3.2 0.00071 19.0 2.2 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain S1 PF00575.18 gi|549454969|ref|YP_008603728.1| - 0.0012 18.9 0.0 0.0043 17.1 0.0 2.1 1 1 0 1 1 1 1 S1 RNA binding domain HypA PF01155.14 gi|549454969|ref|YP_008603728.1| - 0.0024 17.5 0.1 0.0036 16.9 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-FPG_IleRS PF06827.9 gi|549454969|ref|YP_008603728.1| - 0.0029 17.1 2.5 0.035 13.7 0.5 2.3 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS Zn_Tnp_IS91 PF14319.1 gi|549454969|ref|YP_008603728.1| - 0.0036 16.7 0.1 0.0054 16.2 0.1 1.2 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-ribbon_3 PF13248.1 gi|549454969|ref|YP_008603728.1| - 0.0072 15.5 1.5 0.027 13.6 1.1 1.8 1 1 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|549454969|ref|YP_008603728.1| - 0.01 15.1 2.1 1.7 8.0 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|549454969|ref|YP_008603728.1| - 0.012 15.4 0.6 0.018 14.8 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|549454969|ref|YP_008603728.1| - 0.017 14.5 0.7 0.031 13.7 0.5 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain TerY-C PF15616.1 gi|549454969|ref|YP_008603728.1| - 0.036 14.0 0.4 0.056 13.3 0.3 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain DNA_RNApol_7kD PF03604.8 gi|549454969|ref|YP_008603728.1| - 0.051 13.0 1.8 0.096 12.1 1.2 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|549454969|ref|YP_008603728.1| - 0.057 13.0 2.6 0.56 9.8 1.8 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|549454969|ref|YP_008603728.1| - 0.06 13.0 2.5 0.45 10.2 1.7 2.3 1 1 0 1 1 1 0 zinc-ribbon domain DUF2318 PF10080.4 gi|549454969|ref|YP_008603728.1| - 0.095 12.4 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zinc_ribbon_2 PF13240.1 gi|549454969|ref|YP_008603728.1| - 0.17 11.4 1.8 5.3 6.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|549454969|ref|YP_008603728.1| - 0.41 10.6 3.4 0.8 9.7 2.3 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Mu-like_Com PF10122.4 gi|549454969|ref|YP_008603728.1| - 0.59 9.2 4.5 5.4 6.1 3.2 2.1 1 1 0 1 1 1 0 Mu-like prophage protein Com Lar_restr_allev PF14354.1 gi|549454969|ref|YP_008603728.1| - 1 9.7 3.1 3.4 8.0 0.1 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Methyltransf_26 PF13659.1 gi|549454970|ref|YP_008603729.1| - 6.1e-08 32.6 0.7 1e-07 32.0 0.5 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|549454970|ref|YP_008603729.1| - 0.00018 20.9 0.0 0.00024 20.5 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|549454970|ref|YP_008603729.1| - 0.00082 18.7 0.1 0.0047 16.3 0.1 2.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|549454970|ref|YP_008603729.1| - 0.0009 19.8 0.1 0.0014 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|549454970|ref|YP_008603729.1| - 0.0053 16.3 0.0 0.0067 16.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Diphthamide_syn PF01866.12 gi|549454971|ref|YP_008603730.1| - 1.5e-67 228.0 0.0 1.8e-67 227.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Ribosomal_L16 PF00252.13 gi|549454972|ref|YP_008603731.1| - 1e-35 122.3 0.0 1.2e-35 122.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e MoeA_N PF03453.12 gi|549454973|ref|YP_008603732.1| - 9e-36 122.6 0.0 2e-35 121.5 0.0 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|549454973|ref|YP_008603732.1| - 1.6e-16 60.0 0.0 3.6e-16 58.8 0.0 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|549454973|ref|YP_008603732.1| - 5.1e-11 42.3 0.1 1.8e-10 40.6 0.0 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) FAD_binding_4 PF01565.18 gi|549454973|ref|YP_008603732.1| - 0.028 13.8 0.4 0.35 10.3 0.0 2.8 3 0 0 3 3 3 0 FAD binding domain Fe-ADH PF00465.14 gi|549454973|ref|YP_008603732.1| - 0.065 11.8 2.1 0.18 10.4 0.4 2.4 2 1 0 2 2 2 0 Iron-containing alcohol dehydrogenase SLH PF00395.15 gi|549454973|ref|YP_008603732.1| - 0.12 12.0 0.0 0.46 10.2 0.0 2.0 1 0 0 1 1 1 0 S-layer homology domain Cren7 PF11520.3 gi|549454974|ref|YP_008603733.1| - 1.8e-27 94.7 1.8 1.9e-27 94.6 1.2 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 SfsA PF03749.8 gi|549454976|ref|YP_008603735.1| - 1.6e-59 200.9 0.0 1.9e-59 200.7 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein NERD PF08378.6 gi|549454976|ref|YP_008603735.1| - 0.00083 19.5 0.0 0.0093 16.2 0.0 2.1 1 1 0 2 2 2 1 Nuclease-related domain DUF2866 PF11065.3 gi|549454976|ref|YP_008603735.1| - 0.083 12.8 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2866) Peptidase_M15_2 PF05951.8 gi|549454976|ref|YP_008603735.1| - 0.16 11.4 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF882) Aminotran_3 PF00202.16 gi|549454977|ref|YP_008603736.1| - 2.8e-107 358.4 0.0 3.3e-107 358.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|549454977|ref|YP_008603736.1| - 0.0087 15.0 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II MarR_2 PF12802.2 gi|549454978|ref|YP_008603737.1| - 2.1e-07 30.5 0.9 4.2e-07 29.5 0.6 1.5 1 1 0 1 1 1 1 MarR family TrmB PF01978.14 gi|549454978|ref|YP_008603737.1| - 1e-05 25.0 0.1 1.3e-05 24.8 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF3489 PF11994.3 gi|549454978|ref|YP_008603737.1| - 0.00019 21.3 0.0 0.00025 20.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) GntR PF00392.16 gi|549454978|ref|YP_008603737.1| - 0.00027 20.3 0.4 0.00034 19.9 0.3 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|549454978|ref|YP_008603737.1| - 0.00029 21.0 0.1 0.00039 20.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|549454978|ref|YP_008603737.1| - 0.00044 19.9 0.1 0.00055 19.6 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|549454978|ref|YP_008603737.1| - 0.00053 19.3 0.0 0.0044 16.3 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.6 gi|549454978|ref|YP_008603737.1| - 0.0011 18.8 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_IclR PF09339.5 gi|549454978|ref|YP_008603737.1| - 0.0012 18.4 0.1 0.0031 17.0 0.1 1.7 1 1 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|549454978|ref|YP_008603737.1| - 0.0014 18.6 0.0 0.0016 18.4 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_11 PF08279.7 gi|549454978|ref|YP_008603737.1| - 0.0019 17.8 0.0 0.0029 17.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|549454978|ref|YP_008603737.1| - 0.0044 16.6 0.0 0.0071 16.0 0.0 1.3 1 1 0 1 1 1 1 MarR family EAP30 PF04157.11 gi|549454978|ref|YP_008603737.1| - 0.01 15.0 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_42 PF06224.7 gi|549454978|ref|YP_008603737.1| - 0.011 15.1 0.2 0.012 14.9 0.2 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|549454978|ref|YP_008603737.1| - 0.023 14.2 0.0 0.026 14.0 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_DeoR PF08220.7 gi|549454978|ref|YP_008603737.1| - 0.045 13.2 0.1 0.082 12.4 0.1 1.5 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_15 PF12324.3 gi|549454978|ref|YP_008603737.1| - 0.088 12.4 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_12 PF08461.5 gi|549454978|ref|YP_008603737.1| - 0.093 12.4 0.1 0.15 11.8 0.1 1.3 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain RPA_C PF08784.6 gi|549454978|ref|YP_008603737.1| - 0.11 12.9 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal HTH_Crp_2 PF13545.1 gi|549454979|ref|YP_008603738.1| - 1e-05 25.2 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|549454979|ref|YP_008603738.1| - 2.6e-05 24.1 1.4 3.5e-05 23.6 1.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|549454979|ref|YP_008603738.1| - 4.2e-05 23.0 1.7 5.9e-05 22.5 0.8 1.6 1 1 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|549454979|ref|YP_008603738.1| - 0.00021 20.9 1.5 0.00026 20.5 1.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|549454979|ref|YP_008603738.1| - 0.00049 19.7 0.2 0.00057 19.5 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|549454979|ref|YP_008603738.1| - 0.00087 18.9 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 MarR family Crp PF00325.15 gi|549454979|ref|YP_008603738.1| - 0.0011 18.4 0.9 0.0016 17.8 0.6 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_DeoR PF08220.7 gi|549454979|ref|YP_008603738.1| - 0.0019 17.7 0.1 0.0025 17.3 0.1 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|549454979|ref|YP_008603738.1| - 0.0019 18.0 0.1 0.0026 17.6 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|549454979|ref|YP_008603738.1| - 0.002 17.9 0.3 0.0028 17.4 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|549454979|ref|YP_008603738.1| - 0.0024 17.2 0.1 0.0034 16.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|549454979|ref|YP_008603738.1| - 0.0042 16.4 1.6 0.0053 16.1 1.1 1.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|549454979|ref|YP_008603738.1| - 0.0056 16.7 0.0 0.0073 16.4 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|549454979|ref|YP_008603738.1| - 0.0063 16.8 0.0 0.0079 16.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|549454979|ref|YP_008603738.1| - 0.0074 15.8 0.3 0.011 15.2 0.2 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|549454979|ref|YP_008603738.1| - 0.0091 16.1 0.4 0.0098 16.0 0.3 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.1 gi|549454979|ref|YP_008603738.1| - 0.016 14.3 0.1 0.016 14.3 0.1 1.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 LexA_DNA_bind PF01726.11 gi|549454979|ref|YP_008603738.1| - 0.017 14.6 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_11 PF08279.7 gi|549454979|ref|YP_008603738.1| - 0.022 14.3 0.1 0.025 14.2 0.1 1.2 1 0 0 1 1 1 0 HTH domain Ftsk_gamma PF09397.5 gi|549454979|ref|YP_008603738.1| - 0.031 13.9 0.2 0.04 13.6 0.2 1.4 1 1 0 1 1 1 0 Ftsk gamma domain LZ_Tnp_IS481 PF13011.1 gi|549454979|ref|YP_008603738.1| - 0.068 13.5 0.4 0.074 13.3 0.3 1.2 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_17 PF12728.2 gi|549454979|ref|YP_008603738.1| - 0.13 12.5 0.3 0.25 11.6 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Hjc PF01870.13 gi|549454981|ref|YP_008603740.1| - 9.1e-29 98.9 0.0 1.5e-28 98.1 0.0 1.3 2 0 0 2 2 2 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|549454981|ref|YP_008603740.1| - 0.013 15.7 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 Nuclease-related domain MOSC_N PF03476.11 gi|549454981|ref|YP_008603740.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 MOSC N-terminal beta barrel domain T2SE PF00437.15 gi|549454982|ref|YP_008603741.1| - 1.9e-12 46.6 0.1 5.3e-12 45.2 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|549454982|ref|YP_008603741.1| - 3.8e-05 23.1 0.0 0.00012 21.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|549454982|ref|YP_008603741.1| - 7e-05 23.6 0.2 0.00072 20.3 0.0 2.7 2 1 0 3 3 2 1 AAA domain AAA_16 PF13191.1 gi|549454982|ref|YP_008603741.1| - 0.00018 21.5 0.0 0.00051 20.0 0.0 1.8 2 0 0 2 2 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|549454982|ref|YP_008603741.1| - 0.00047 19.6 0.0 0.00089 18.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|549454982|ref|YP_008603741.1| - 0.0011 19.2 0.0 0.0032 17.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|549454982|ref|YP_008603741.1| - 0.0035 16.2 0.0 0.0089 14.9 0.0 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain NACHT PF05729.7 gi|549454982|ref|YP_008603741.1| - 0.0051 16.4 0.2 0.017 14.7 0.1 1.9 2 0 0 2 2 1 1 NACHT domain AAA_28 PF13521.1 gi|549454982|ref|YP_008603741.1| - 0.0056 16.6 0.1 0.016 15.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|549454982|ref|YP_008603741.1| - 0.0073 16.0 1.3 0.023 14.4 0.0 2.4 3 0 0 3 3 3 1 Part of AAA domain AAA_22 PF13401.1 gi|549454982|ref|YP_008603741.1| - 0.0083 16.2 0.0 0.029 14.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|549454982|ref|YP_008603741.1| - 0.0092 15.0 0.1 0.037 13.0 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus FtsK_SpoIIIE PF01580.13 gi|549454982|ref|YP_008603741.1| - 0.0098 15.3 0.0 0.021 14.2 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family KaiC PF06745.8 gi|549454982|ref|YP_008603741.1| - 0.012 14.7 0.0 0.032 13.3 0.0 1.7 1 0 0 1 1 1 0 KaiC AAA_5 PF07728.9 gi|549454982|ref|YP_008603741.1| - 0.012 15.2 0.1 0.042 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|549454982|ref|YP_008603741.1| - 0.016 15.4 0.0 0.031 14.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|549454982|ref|YP_008603741.1| - 0.016 14.0 0.0 0.034 12.9 0.0 1.5 1 0 0 1 1 1 0 ArgK protein ABC_tran PF00005.22 gi|549454982|ref|YP_008603741.1| - 0.02 15.1 0.0 0.039 14.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.1 gi|549454982|ref|YP_008603741.1| - 0.022 14.6 0.1 0.068 13.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain SRP54 PF00448.17 gi|549454982|ref|YP_008603741.1| - 0.024 14.0 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain KTI12 PF08433.5 gi|549454982|ref|YP_008603741.1| - 0.026 13.7 0.0 0.067 12.3 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|549454982|ref|YP_008603741.1| - 0.033 13.7 0.1 0.094 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|549454982|ref|YP_008603741.1| - 0.053 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|549454982|ref|YP_008603741.1| - 0.056 13.3 0.1 0.35 10.7 0.0 2.4 3 0 0 3 3 2 0 AAA domain Zeta_toxin PF06414.7 gi|549454982|ref|YP_008603741.1| - 0.063 12.3 0.0 0.15 11.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.10 gi|549454982|ref|YP_008603741.1| - 0.076 12.7 0.1 0.28 10.8 0.0 2.0 2 0 0 2 2 1 0 NTPase NIR_SIR_ferr PF03460.12 gi|549454982|ref|YP_008603741.1| - 0.083 12.5 0.0 0.23 11.1 0.0 1.7 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain Sigma54_activ_2 PF14532.1 gi|549454982|ref|YP_008603741.1| - 0.084 12.9 0.0 0.23 11.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain PhoH PF02562.11 gi|549454982|ref|YP_008603741.1| - 0.088 12.0 0.2 0.54 9.4 0.1 2.1 1 1 1 2 2 2 0 PhoH-like protein RNA_helicase PF00910.17 gi|549454982|ref|YP_008603741.1| - 0.1 12.7 0.0 0.29 11.3 0.0 1.9 2 0 0 2 2 1 0 RNA helicase CbiA PF01656.18 gi|549454982|ref|YP_008603741.1| - 0.11 11.9 0.1 0.16 11.3 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.12 gi|549454982|ref|YP_008603741.1| - 0.13 11.6 0.0 0.37 10.1 0.0 1.7 1 1 1 2 2 2 0 Thymidylate kinase ATP_bind_1 PF03029.12 gi|549454982|ref|YP_008603741.1| - 0.13 11.7 0.1 0.23 10.9 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF815 PF05673.8 gi|549454982|ref|YP_008603741.1| - 0.14 11.1 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|549454982|ref|YP_008603741.1| - 0.15 11.6 0.0 0.44 10.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|549454982|ref|YP_008603741.1| - 0.17 11.4 0.1 0.7 9.4 0.0 2.0 2 0 0 2 2 1 0 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|549454982|ref|YP_008603741.1| - 0.19 10.5 0.0 0.76 8.5 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain ThiI PF02568.9 gi|549454984|ref|YP_008603743.1| - 1e-44 152.3 0.0 1.4e-44 151.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|549454984|ref|YP_008603743.1| - 2.3e-23 82.6 0.1 3.4e-23 82.1 0.0 1.2 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|549454984|ref|YP_008603743.1| - 0.0023 17.2 0.0 0.55 9.4 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC HTH_23 PF13384.1 gi|549454986|ref|YP_008603745.1| - 5.5e-05 22.6 0.0 0.0001 21.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|549454986|ref|YP_008603745.1| - 0.00013 21.3 0.0 0.0003 20.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|549454986|ref|YP_008603745.1| - 0.00017 20.9 0.0 0.001 18.4 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|549454986|ref|YP_008603745.1| - 0.0002 20.6 0.2 0.0068 15.6 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|549454986|ref|YP_008603745.1| - 0.0024 17.4 0.0 0.0055 16.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_40 PF14493.1 gi|549454986|ref|YP_008603745.1| - 0.0045 17.1 0.1 0.011 15.8 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|549454986|ref|YP_008603745.1| - 0.035 13.6 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_DeoR PF08220.7 gi|549454986|ref|YP_008603745.1| - 0.037 13.5 0.0 0.08 12.4 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PaaX PF07848.7 gi|549454986|ref|YP_008603745.1| - 0.082 12.9 0.1 0.26 11.3 0.0 1.7 1 1 1 2 2 2 0 PaaX-like protein HTH_28 PF13518.1 gi|549454986|ref|YP_008603745.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2379 PF09543.5 gi|549454986|ref|YP_008603745.1| - 0.13 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) Nuclease_act PF08133.6 gi|549454987|ref|YP_008603746.1| - 0.27 10.7 4.9 5.8 6.4 0.2 3.2 3 0 0 3 3 3 0 Anticodon nuclease activator family Cas_Cas4 PF01930.12 gi|549454988|ref|YP_008603747.1| - 8.3e-14 51.8 0.0 1.1e-13 51.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|549454988|ref|YP_008603747.1| - 7.8e-13 48.3 0.0 1.5e-12 47.5 0.0 1.4 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.4 gi|549454989|ref|YP_008603748.1| - 1e-17 64.0 0.0 1.1e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.11 gi|549454990|ref|YP_008603749.1| - 1.3e-57 195.0 0.0 1.5e-57 194.8 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Chlorophyllase PF07224.6 gi|549454990|ref|YP_008603749.1| - 0.049 12.4 0.0 0.12 11.1 0.0 1.5 2 0 0 2 2 2 0 Chlorophyllase CBS PF00571.23 gi|549454990|ref|YP_008603749.1| - 0.055 13.2 0.2 0.16 11.8 0.1 1.7 1 0 0 1 1 1 0 CBS domain DUF911 PF06023.7 gi|549454991|ref|YP_008603750.1| - 2.7e-83 279.5 0.0 3.2e-83 279.2 0.0 1.0 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) HTH_23 PF13384.1 gi|549454992|ref|YP_008603751.1| - 0.00036 20.0 0.0 0.0012 18.4 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|549454992|ref|YP_008603751.1| - 0.00097 18.6 0.0 0.0024 17.3 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|549454992|ref|YP_008603751.1| - 0.0046 16.9 0.0 0.037 14.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.14 gi|549454992|ref|YP_008603751.1| - 0.0089 15.3 0.0 0.021 14.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_29 PF13551.1 gi|549454992|ref|YP_008603751.1| - 0.013 15.6 0.0 0.034 14.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix MarR_2 PF12802.2 gi|549454992|ref|YP_008603751.1| - 0.015 14.9 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|549454992|ref|YP_008603751.1| - 0.018 14.4 0.0 0.034 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|549454992|ref|YP_008603751.1| - 0.025 14.6 0.2 0.097 12.8 0.0 2.0 3 0 0 3 3 3 0 Transcriptional regulator HTH_20 PF12840.2 gi|549454992|ref|YP_008603751.1| - 0.034 13.9 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|549454992|ref|YP_008603751.1| - 0.13 11.8 0.1 0.98 9.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|549454992|ref|YP_008603751.1| - 0.15 11.5 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF2276 PF10040.4 gi|549454992|ref|YP_008603751.1| - 0.15 12.2 0.5 19 5.4 0.0 2.7 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2276) CBS PF00571.23 gi|549454993|ref|YP_008603752.1| - 2.1e-23 81.8 10.3 4.4e-07 29.5 0.4 4.8 4 1 1 5 5 5 4 CBS domain AsnC_trans_reg PF01037.16 gi|549454993|ref|YP_008603752.1| - 3.9e-14 52.0 0.1 8.8e-14 50.9 0.0 1.7 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|549454993|ref|YP_008603752.1| - 0.07 12.8 0.1 0.83 9.4 0.0 2.4 2 0 0 2 2 2 0 GYD domain HTH_5 PF01022.15 gi|549454994|ref|YP_008603753.1| - 1.3e-05 24.7 0.1 3.3e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|549454994|ref|YP_008603753.1| - 5.8e-05 22.7 0.0 0.0001 21.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|549454994|ref|YP_008603753.1| - 0.00039 19.9 0.0 0.00087 18.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|549454994|ref|YP_008603753.1| - 0.0011 18.8 0.1 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF3363 PF11843.3 gi|549454994|ref|YP_008603753.1| - 0.0014 17.3 0.2 0.0045 15.6 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3363) HTH_20 PF12840.2 gi|549454994|ref|YP_008603753.1| - 0.0047 16.6 0.0 0.0087 15.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.14 gi|549454994|ref|YP_008603753.1| - 0.015 14.8 0.0 0.034 13.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family RuvB_C PF05491.8 gi|549454994|ref|YP_008603753.1| - 0.032 13.8 0.1 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus HTH_43 PF09904.4 gi|549454994|ref|YP_008603753.1| - 0.035 13.8 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix MarR_2 PF12802.2 gi|549454994|ref|YP_008603753.1| - 0.081 12.6 0.0 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_28 PF13518.1 gi|549454994|ref|YP_008603753.1| - 0.098 12.6 0.0 2.2 8.3 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|549454994|ref|YP_008603753.1| - 0.1 12.2 0.1 0.22 11.2 0.1 1.5 1 0 0 1 1 1 0 HTH domain Phage_X PF05155.10 gi|549454994|ref|YP_008603753.1| - 0.15 11.9 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Phage X family Mga PF05043.8 gi|549454994|ref|YP_008603753.1| - 0.19 12.0 0.7 0.37 11.0 0.1 1.7 2 0 0 2 2 2 0 Mga helix-turn-helix domain Cas_Csa5 PF09702.5 gi|549454995|ref|YP_008603754.1| - 0.0051 16.8 0.0 0.0068 16.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa5) DevR PF01905.11 gi|549454996|ref|YP_008603755.1| - 8e-63 211.8 0.0 9.4e-63 211.5 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Cas5d PF09704.5 gi|549454997|ref|YP_008603756.1| - 9.1e-05 22.1 0.4 0.00037 20.1 0.2 2.1 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.24 gi|549454999|ref|YP_008603758.1| - 6.7e-12 45.2 0.0 9e-06 25.2 0.0 3.0 2 1 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|549454999|ref|YP_008603758.1| - 4.2e-05 23.3 0.1 0.00016 21.5 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|549454999|ref|YP_008603758.1| - 0.012 15.4 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit HD PF01966.17 gi|549455000|ref|YP_008603759.1| - 0.0036 17.3 0.1 0.0074 16.2 0.0 1.8 1 1 0 1 1 1 1 HD domain DUF2276 PF10040.4 gi|549455001|ref|YP_008603760.1| - 1.1e-20 74.0 0.0 2.3e-20 73.0 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Cas_Cas6 PF01881.11 gi|549455001|ref|YP_008603760.1| - 0.11 12.6 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 CRISPR associated protein Cas6 ABC2_membrane_2 PF12679.2 gi|549455002|ref|YP_008603761.1| - 2e-11 43.2 10.7 2.4e-11 42.9 7.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|549455002|ref|YP_008603761.1| - 4.3e-08 32.6 6.1 5.4e-08 32.2 4.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|549455002|ref|YP_008603761.1| - 0.13 11.2 6.9 0.16 10.9 4.8 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|549455002|ref|YP_008603761.1| - 0.14 11.4 1.9 0.22 10.7 1.3 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein CUE PF02845.11 gi|549455003|ref|YP_008603762.1| - 0.049 13.1 0.2 0.072 12.5 0.1 1.2 1 0 0 1 1 1 0 CUE domain 7TM_GPCR_Srh PF10318.4 gi|549455003|ref|YP_008603762.1| - 0.051 12.3 0.1 0.058 12.1 0.1 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh PrgI PF12666.2 gi|549455003|ref|YP_008603762.1| - 0.066 13.3 0.5 0.078 13.1 0.4 1.1 1 0 0 1 1 1 0 PrgI family protein ABC_tran PF00005.22 gi|549455005|ref|YP_008603764.1| - 2e-19 70.2 0.0 4.2e-19 69.1 0.0 1.6 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455005|ref|YP_008603764.1| - 2.2e-15 57.4 0.0 1.3e-09 38.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|549455005|ref|YP_008603764.1| - 0.0094 15.2 0.0 0.64 9.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|549455005|ref|YP_008603764.1| - 0.021 13.8 0.0 0.39 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|549455005|ref|YP_008603764.1| - 0.04 13.8 0.0 0.086 12.7 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|549455005|ref|YP_008603764.1| - 0.059 13.6 0.0 0.079 13.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain PIN PF01850.16 gi|549455006|ref|YP_008603765.1| - 4.4e-10 39.9 0.3 6.1e-10 39.4 0.2 1.2 1 0 0 1 1 1 1 PIN domain Plasmid_stabil PF05016.9 gi|549455007|ref|YP_008603766.1| - 1.3e-08 35.0 4.2 1.5e-08 34.8 2.9 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|549455007|ref|YP_008603766.1| - 0.0082 16.1 0.1 0.011 15.7 0.1 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) His_kinase PF06580.8 gi|549455008|ref|YP_008603767.1| - 0.0078 16.1 0.6 0.0086 15.9 0.4 1.1 1 0 0 1 1 1 1 Histidine kinase DUF4061 PF13270.1 gi|549455008|ref|YP_008603767.1| - 0.095 12.7 0.5 0.11 12.6 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4061) Cauli_DNA-bind PF03310.8 gi|549455008|ref|YP_008603767.1| - 0.19 11.6 1.4 0.21 11.4 1.0 1.2 1 0 0 1 1 1 0 Caulimovirus DNA-binding protein PemK PF02452.12 gi|549455009|ref|YP_008603768.1| - 8.5e-14 51.6 0.1 9.6e-14 51.5 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein DUF104 PF01954.11 gi|549455010|ref|YP_008603769.1| - 1.8e-06 27.8 4.6 1.9e-06 27.7 3.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Antitoxin-MazE PF04014.13 gi|549455011|ref|YP_008603770.1| - 5.6e-10 38.7 0.1 1.5e-09 37.3 0.1 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE TOBE PF03459.12 gi|549455011|ref|YP_008603770.1| - 0.021 14.9 0.0 0.08 13.0 0.0 2.0 1 0 0 1 1 1 0 TOBE domain PLU-1 PF08429.6 gi|549455011|ref|YP_008603770.1| - 0.052 12.4 1.6 0.11 11.3 1.1 1.5 1 1 0 1 1 1 0 PLU-1-like protein DASH_Dad3 PF08656.5 gi|549455011|ref|YP_008603770.1| - 0.067 12.8 0.6 0.2 11.4 0.4 1.8 1 0 0 1 1 1 0 DASH complex subunit Dad3 Cdc6_C PF09079.6 gi|549455012|ref|YP_008603771.1| - 8.8e-24 83.0 0.3 8.8e-24 83.0 0.2 2.0 3 0 0 3 3 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|549455012|ref|YP_008603771.1| - 1.2e-13 51.5 2.7 6e-12 45.9 0.1 3.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|549455012|ref|YP_008603771.1| - 3.9e-12 46.4 0.0 7.8e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|549455012|ref|YP_008603771.1| - 2.1e-06 27.9 0.0 4.7e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|549455012|ref|YP_008603771.1| - 7.7e-05 22.4 0.0 0.00015 21.5 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|549455012|ref|YP_008603771.1| - 0.0031 16.9 0.0 0.65 9.3 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF815 PF05673.8 gi|549455012|ref|YP_008603771.1| - 0.007 15.3 0.0 0.011 14.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DEAD PF00270.24 gi|549455012|ref|YP_008603771.1| - 0.013 14.9 0.0 6 6.3 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|549455012|ref|YP_008603771.1| - 0.018 14.7 0.6 0.066 12.9 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain RuvB_N PF05496.7 gi|549455012|ref|YP_008603771.1| - 0.021 13.8 0.0 0.75 8.7 0.0 2.6 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|549455012|ref|YP_008603771.1| - 0.051 12.2 0.1 2.1 6.9 0.0 2.2 1 1 1 2 2 2 0 TIP49 C-terminus Sigma54_activat PF00158.21 gi|549455012|ref|YP_008603771.1| - 0.055 12.9 0.0 0.15 11.5 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|549455012|ref|YP_008603771.1| - 0.081 12.6 1.2 0.43 10.3 0.8 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|549455012|ref|YP_008603771.1| - 0.1 11.6 0.0 0.2 10.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|549455012|ref|YP_008603771.1| - 0.34 11.7 3.7 4.5 8.1 2.6 2.9 1 1 0 1 1 1 0 AAA domain DUF99 PF01949.11 gi|549455013|ref|YP_008603772.1| - 4.4e-25 87.8 0.0 5.4e-25 87.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Radical_SAM PF04055.16 gi|549455016|ref|YP_008603775.1| - 1.4e-22 80.6 0.0 4.4e-22 79.0 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|549455016|ref|YP_008603775.1| - 3.9e-22 78.3 0.0 5.7e-22 77.7 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|549455016|ref|YP_008603775.1| - 3.6e-05 23.7 0.0 8.4e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|549455016|ref|YP_008603775.1| - 0.011 15.9 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1814 PF08843.6 gi|549455018|ref|YP_008603777.1| - 0.00056 19.7 3.2 0.00089 19.1 2.2 1.3 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) DUF2204 PF09970.4 gi|549455018|ref|YP_008603777.1| - 0.0088 15.5 1.9 0.025 14.0 1.3 1.7 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) RNase_P_p30 PF01876.11 gi|549455018|ref|YP_008603777.1| - 0.049 12.8 0.0 0.071 12.3 0.0 1.3 1 0 0 1 1 1 0 RNase P subunit p30 PP_kinase PF02503.12 gi|549455018|ref|YP_008603777.1| - 0.092 12.2 0.1 0.14 11.6 0.1 1.3 1 0 0 1 1 1 0 Polyphosphate kinase middle domain Fer4_8 PF13183.1 gi|549455019|ref|YP_008603778.1| - 2.5e-12 46.6 3.0 3.7e-12 46.0 2.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|549455019|ref|YP_008603778.1| - 1.4e-11 43.9 2.9 3.3e-11 42.7 2.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|549455019|ref|YP_008603778.1| - 2.3e-11 43.8 1.7 2.9e-11 43.5 1.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|549455019|ref|YP_008603778.1| - 4.3e-11 41.9 13.2 1.6e-06 27.4 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|549455019|ref|YP_008603778.1| - 1.8e-09 37.8 3.7 1.3e-05 25.5 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|549455019|ref|YP_008603778.1| - 8e-09 34.9 10.7 0.00031 20.4 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|549455019|ref|YP_008603778.1| - 1e-08 34.6 10.7 0.00037 20.2 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|549455019|ref|YP_008603778.1| - 7e-08 32.7 7.5 2.2e-07 31.1 5.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|549455019|ref|YP_008603778.1| - 6.5e-07 29.5 9.1 1e-05 25.6 6.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|549455019|ref|YP_008603778.1| - 2e-05 24.5 11.0 0.013 15.7 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|549455019|ref|YP_008603778.1| - 3.4e-05 23.6 5.7 0.018 14.8 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|549455019|ref|YP_008603778.1| - 7e-05 23.3 2.6 0.11 13.0 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|549455019|ref|YP_008603778.1| - 0.00023 21.4 17.7 0.0026 18.1 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|549455019|ref|YP_008603778.1| - 0.00076 19.0 1.1 0.059 13.0 0.0 2.1 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|549455019|ref|YP_008603778.1| - 0.0012 19.5 11.2 0.018 15.7 8.0 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|549455019|ref|YP_008603778.1| - 0.011 16.1 8.8 0.23 11.8 0.7 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain FAD-oxidase_C PF02913.14 gi|549455022|ref|YP_008603781.1| - 2e-65 220.5 0.4 2.6e-65 220.1 0.3 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|549455022|ref|YP_008603781.1| - 2e-37 127.7 0.2 3.6e-37 126.9 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Mon1 PF03164.9 gi|549455022|ref|YP_008603781.1| - 0.076 11.6 0.0 0.11 11.0 0.0 1.1 1 0 0 1 1 1 0 Trafficking protein Mon1 DUF2204 PF09970.4 gi|549455024|ref|YP_008603783.1| - 5.5e-57 192.1 0.0 6.1e-57 192.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) PK PF00224.16 gi|549455025|ref|YP_008603784.1| - 4.2e-89 298.5 0.0 5.8e-89 298.1 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|549455025|ref|YP_008603784.1| - 7.8e-07 28.6 0.0 1.7e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|549455025|ref|YP_008603784.1| - 2.4e-05 23.3 0.0 0.00013 20.9 0.0 2.0 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Pribosyltran PF00156.22 gi|549455026|ref|YP_008603785.1| - 7.1e-18 64.5 0.0 1.4e-17 63.5 0.0 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain PaaX PF07848.7 gi|549455026|ref|YP_008603785.1| - 0.065 13.2 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 PaaX-like protein Nitroreductase PF00881.19 gi|549455027|ref|YP_008603786.1| - 5e-26 91.4 0.0 6.4e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family IF-2B PF01008.12 gi|549455028|ref|YP_008603787.1| - 8.6e-10 38.0 0.0 1.1e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Initiation factor 2 subunit family RNase_HII PF01351.13 gi|549455029|ref|YP_008603788.1| - 1.9e-43 148.4 0.0 2.2e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII tRNA_m1G_MT PF01746.16 gi|549455030|ref|YP_008603789.1| - 1.5e-33 115.9 0.0 2e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase RNA_Me_trans PF04252.8 gi|549455030|ref|YP_008603789.1| - 0.043 13.2 0.0 0.075 12.4 0.0 1.3 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase Lactamase_B_2 PF12706.2 gi|549455031|ref|YP_008603790.1| - 0.00083 18.9 0.0 0.0011 18.4 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain EMG1 PF03587.9 gi|549455032|ref|YP_008603791.1| - 1.8e-43 148.2 0.0 2e-43 148.0 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase DUF2153 PF09921.4 gi|549455033|ref|YP_008603792.1| - 9.4e-55 183.6 2.4 1.1e-54 183.4 1.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Trm112p PF03966.11 gi|549455034|ref|YP_008603793.1| - 3.2e-16 59.4 0.8 4.3e-16 59.0 0.6 1.2 1 0 0 1 1 1 1 Trm112p-like protein zinc_ribbon_2 PF13240.1 gi|549455034|ref|YP_008603793.1| - 0.029 13.8 1.5 0.39 10.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|549455034|ref|YP_008603793.1| - 0.035 13.4 1.6 1.9 7.9 0.3 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|549455034|ref|YP_008603793.1| - 0.14 11.3 1.6 2.5 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|549455034|ref|YP_008603793.1| - 2.9 7.7 5.7 23 4.8 1.0 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-HYPF PF07503.7 gi|549455034|ref|YP_008603793.1| - 2.9 7.3 8.1 0.69 9.3 0.1 2.9 3 0 0 3 3 3 0 HypF finger zf-RING_3 PF14369.1 gi|549455034|ref|YP_008603793.1| - 7.2 6.6 8.5 18 5.4 0.0 3.2 2 1 0 2 2 2 0 zinc-finger Endonuclease_5 PF04493.9 gi|549455035|ref|YP_008603794.1| - 4.7e-46 156.7 0.0 5.8e-46 156.4 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|549455035|ref|YP_008603794.1| - 0.014 14.5 0.1 0.032 13.3 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function DUF99 Proteasome PF00227.21 gi|549455036|ref|YP_008603795.1| - 7.5e-52 175.3 0.0 8.4e-52 175.2 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit TF_Zn_Ribbon PF08271.7 gi|549455037|ref|YP_008603796.1| - 1.7e-09 36.8 0.6 2.5e-09 36.2 0.4 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|549455037|ref|YP_008603796.1| - 0.015 14.7 1.1 0.027 13.9 0.7 1.4 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|549455037|ref|YP_008603796.1| - 0.018 14.2 0.4 1.6 8.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RRN7 PF11781.3 gi|549455037|ref|YP_008603796.1| - 0.029 13.8 0.1 0.052 13.0 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 RNA_POL_M_15KD PF02150.11 gi|549455037|ref|YP_008603796.1| - 0.03 14.0 0.2 0.048 13.3 0.1 1.2 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Ribosomal_S27e PF01667.12 gi|549455037|ref|YP_008603796.1| - 0.053 13.0 1.0 0.089 12.3 0.7 1.2 1 0 0 1 1 1 0 Ribosomal protein S27 zf-NADH-PPase PF09297.6 gi|549455037|ref|YP_008603796.1| - 0.063 12.8 0.4 0.14 11.7 0.3 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF641 PF04859.7 gi|549455037|ref|YP_008603796.1| - 0.069 12.9 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) zinc_ribbon_2 PF13240.1 gi|549455037|ref|YP_008603796.1| - 0.08 12.4 0.6 9.1 5.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|549455037|ref|YP_008603796.1| - 0.13 12.2 0.1 0.21 11.6 0.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain DUF4182 PF13790.1 gi|549455037|ref|YP_008603796.1| - 0.2 11.4 0.2 0.2 11.4 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) MMR_HSR1 PF01926.18 gi|549455038|ref|YP_008603797.1| - 3e-15 56.1 0.0 5.5e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|549455038|ref|YP_008603797.1| - 1.9e-08 33.7 0.0 3.1e-08 33.0 0.0 1.5 1 1 0 1 1 1 1 Ferrous iron transport protein B NOG1 PF06858.9 gi|549455038|ref|YP_008603797.1| - 4.5e-08 32.8 0.0 9.4e-08 31.8 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) AAA_17 PF13207.1 gi|549455038|ref|YP_008603797.1| - 0.00011 22.9 0.2 0.00086 20.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|549455038|ref|YP_008603797.1| - 0.00023 21.1 0.2 0.0043 17.0 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|549455038|ref|YP_008603797.1| - 0.0037 17.2 1.2 0.011 15.7 0.2 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|549455038|ref|YP_008603797.1| - 0.0044 17.3 0.3 0.047 13.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain GTP_EFTU PF00009.22 gi|549455038|ref|YP_008603797.1| - 0.0048 16.3 0.0 0.34 10.3 0.0 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|549455038|ref|YP_008603797.1| - 0.0082 15.9 0.4 1.7 8.4 0.1 2.3 1 1 1 2 2 2 1 Dynamin family AAA_33 PF13671.1 gi|549455038|ref|YP_008603797.1| - 0.011 15.5 0.9 0.034 14.0 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_14 PF13173.1 gi|549455038|ref|YP_008603797.1| - 0.018 14.9 0.0 0.28 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|549455038|ref|YP_008603797.1| - 0.029 13.8 0.1 0.077 12.4 0.1 1.9 1 1 0 1 1 1 0 AAA-like domain KTI12 PF08433.5 gi|549455038|ref|YP_008603797.1| - 0.03 13.5 0.0 0.082 12.0 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|549455038|ref|YP_008603797.1| - 0.032 13.9 0.0 0.094 12.4 0.0 1.8 1 0 0 1 1 1 0 NTPase AAA_22 PF13401.1 gi|549455038|ref|YP_008603797.1| - 0.034 14.2 0.0 0.17 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|549455038|ref|YP_008603797.1| - 0.035 13.6 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|549455038|ref|YP_008603797.1| - 0.063 13.7 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein T2SE PF00437.15 gi|549455038|ref|YP_008603797.1| - 0.082 11.8 0.0 0.2 10.4 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|549455038|ref|YP_008603797.1| - 0.092 12.5 0.0 0.092 12.5 0.0 3.0 3 2 0 3 3 3 0 Part of AAA domain cobW PF02492.14 gi|549455038|ref|YP_008603797.1| - 0.12 11.8 0.0 1.8 7.9 0.0 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AIG1 PF04548.11 gi|549455038|ref|YP_008603797.1| - 0.19 10.8 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 AIG1 family RTC PF01137.16 gi|549455039|ref|YP_008603798.1| - 2.7e-81 271.7 0.0 3.1e-81 271.5 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|549455039|ref|YP_008603798.1| - 8.4e-24 83.5 0.0 1.4e-23 82.8 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_2 PF01467.21 gi|549455040|ref|YP_008603799.1| - 2.1e-15 57.1 0.0 2.7e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase Nol1_Nop2_Fmu PF01189.12 gi|549455041|ref|YP_008603800.1| - 1.6e-54 185.1 0.0 1.9e-54 184.9 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family FtsJ PF01728.14 gi|549455041|ref|YP_008603800.1| - 0.0032 17.4 0.0 0.007 16.3 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Cons_hypoth95 PF03602.10 gi|549455041|ref|YP_008603800.1| - 0.004 16.5 0.0 0.0063 15.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|549455041|ref|YP_008603800.1| - 0.094 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|549455041|ref|YP_008603800.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|549455041|ref|YP_008603800.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Fibrillarin PF01269.12 gi|549455041|ref|YP_008603800.1| - 0.14 11.0 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin UPF0113 PF03657.8 gi|549455042|ref|YP_008603801.1| - 7.7e-51 171.9 0.0 8.7e-51 171.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) Nol1_Nop2_Fmu_2 PF13636.1 gi|549455042|ref|YP_008603801.1| - 0.0041 17.1 0.0 0.0062 16.5 0.0 1.2 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis FKBP_C PF00254.23 gi|549455043|ref|YP_008603802.1| - 8.7e-12 44.8 0.1 4.6e-11 42.5 0.0 2.2 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Fe-ADH_2 PF13685.1 gi|549455044|ref|YP_008603803.1| - 8.6e-63 211.9 0.3 1.1e-62 211.6 0.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|549455044|ref|YP_008603803.1| - 1.5e-27 96.2 3.1 4.6e-27 94.6 2.2 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|549455044|ref|YP_008603803.1| - 4.2e-11 42.2 5.6 4.2e-08 32.4 0.4 3.9 2 1 0 2 2 2 2 3-dehydroquinate synthase Proteasome PF00227.21 gi|549455045|ref|YP_008603804.1| - 2.7e-56 189.8 0.5 3.1e-56 189.7 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|549455046|ref|YP_008603805.1| - 1.2e-35 122.1 0.0 3.9e-35 120.5 0.0 1.9 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|549455046|ref|YP_008603805.1| - 6.9e-20 71.5 0.1 1.7e-19 70.2 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|549455046|ref|YP_008603805.1| - 3.6e-12 45.8 0.0 4e-11 42.5 0.0 2.4 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|549455046|ref|YP_008603805.1| - 2.3e-10 40.3 0.0 2.1e-09 37.2 0.0 2.3 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|549455046|ref|YP_008603805.1| - 0.0021 17.8 0.0 0.0062 16.2 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Tospo_nucleocap PF01533.11 gi|549455046|ref|YP_008603805.1| - 0.22 10.7 0.0 0.35 10.0 0.0 1.2 1 0 0 1 1 1 0 Tospovirus nucleocapsid protein PDEase_II PF02112.10 gi|549455046|ref|YP_008603805.1| - 0.28 10.0 0.1 0.44 9.4 0.0 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II PUA PF01472.15 gi|549455047|ref|YP_008603806.1| - 4.2e-18 64.8 1.9 6.6e-18 64.2 1.3 1.3 1 0 0 1 1 1 1 PUA domain LSM PF01423.17 gi|549455048|ref|YP_008603807.1| - 6.3e-18 64.0 0.2 7.1e-18 63.9 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|549455048|ref|YP_008603807.1| - 0.00091 19.0 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|549455049|ref|YP_008603808.1| - 9.7e-26 89.3 13.6 1.1e-25 89.1 9.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|549455049|ref|YP_008603808.1| - 0.01 15.6 0.5 0.012 15.3 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-RING_5 PF14634.1 gi|549455049|ref|YP_008603808.1| - 0.13 12.0 1.0 0.18 11.5 0.7 1.2 1 0 0 1 1 1 0 zinc-RING finger domain zf-C3HC4 PF00097.20 gi|549455049|ref|YP_008603808.1| - 0.24 11.0 1.4 0.37 10.4 1.0 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FYVE_2 PF02318.11 gi|549455049|ref|YP_008603808.1| - 0.33 10.8 2.3 0.36 10.7 1.6 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|549455049|ref|YP_008603808.1| - 2.4 8.0 7.4 12 5.7 5.2 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|549455049|ref|YP_008603808.1| - 2.8 7.2 4.9 19 4.6 3.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Peptidase_M24 PF00557.19 gi|549455050|ref|YP_008603809.1| - 8.9e-56 188.7 0.0 1.3e-55 188.1 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|549455050|ref|YP_008603809.1| - 3.1e-09 37.4 0.0 5.2e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain FmdA_AmdA PF03069.10 gi|549455051|ref|YP_008603810.1| - 1.5e-141 471.4 0.0 1.7e-141 471.1 0.0 1.0 1 0 0 1 1 1 1 Acetamidase/Formamidase family Inhibitor_Mig-6 PF11555.3 gi|549455051|ref|YP_008603810.1| - 0.18 12.2 1.7 0.35 11.2 1.2 1.5 1 0 0 1 1 1 0 EGFR receptor inhibitor Mig-6 TroA PF01297.12 gi|549455052|ref|YP_008603811.1| - 2.6e-16 59.6 0.0 3.1e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family TP_methylase PF00590.15 gi|549455052|ref|YP_008603811.1| - 0.89 9.2 6.2 0.93 9.1 0.7 3.0 2 1 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases ABC_tran PF00005.22 gi|549455053|ref|YP_008603812.1| - 2.6e-25 89.3 0.0 3.3e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455053|ref|YP_008603812.1| - 3.6e-15 56.6 0.0 1.3e-07 31.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|549455053|ref|YP_008603812.1| - 4.2e-06 27.2 0.2 6.1e-06 26.7 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|549455053|ref|YP_008603812.1| - 2.6e-05 23.4 0.0 0.1 11.6 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|549455053|ref|YP_008603812.1| - 0.00018 20.8 0.0 0.018 14.2 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|549455053|ref|YP_008603812.1| - 0.00089 19.3 0.1 0.012 15.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|549455053|ref|YP_008603812.1| - 0.0031 16.4 0.0 0.0044 15.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_10 PF12846.2 gi|549455053|ref|YP_008603812.1| - 0.0048 16.3 0.2 0.086 12.2 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|549455053|ref|YP_008603812.1| - 0.0049 16.3 0.1 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|549455053|ref|YP_008603812.1| - 0.012 15.3 1.5 0.057 13.1 1.1 2.4 1 1 0 1 1 1 0 Part of AAA domain AAA_16 PF13191.1 gi|549455053|ref|YP_008603812.1| - 0.014 15.4 0.8 0.039 13.9 0.6 1.9 1 1 0 1 1 1 0 AAA ATPase domain DUF3584 PF12128.3 gi|549455053|ref|YP_008603812.1| - 0.017 12.4 0.1 0.022 12.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_30 PF13604.1 gi|549455053|ref|YP_008603812.1| - 0.026 14.1 0.0 0.09 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|549455053|ref|YP_008603812.1| - 0.027 14.1 0.2 0.045 13.4 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|549455053|ref|YP_008603812.1| - 0.032 13.9 0.3 0.063 12.9 0.2 1.5 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|549455053|ref|YP_008603812.1| - 0.034 13.6 0.7 0.049 13.0 0.5 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|549455053|ref|YP_008603812.1| - 0.042 13.7 0.1 0.066 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|549455053|ref|YP_008603812.1| - 0.061 13.2 0.3 0.59 10.0 0.1 2.1 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|549455053|ref|YP_008603812.1| - 0.07 12.2 0.1 0.11 11.5 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|549455053|ref|YP_008603812.1| - 0.073 13.2 0.2 0.37 10.9 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|549455053|ref|YP_008603812.1| - 0.092 11.5 0.2 0.13 11.0 0.1 1.1 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|549455053|ref|YP_008603812.1| - 0.1 12.1 0.1 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|549455053|ref|YP_008603812.1| - 0.18 11.5 0.1 0.27 10.8 0.1 1.2 1 0 0 1 1 1 0 Archaeal ATPase ABC-3 PF00950.12 gi|549455054|ref|YP_008603813.1| - 1.8e-10 40.5 27.9 2.2e-10 40.2 19.4 1.2 1 0 0 1 1 1 1 ABC 3 transport family PsbN PF02468.10 gi|549455054|ref|YP_008603813.1| - 0.17 11.4 0.1 0.17 11.4 0.1 2.4 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) RHH_3 PF12651.2 gi|549455055|ref|YP_008603814.1| - 4e-13 48.8 0.1 6.4e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain NikR_C PF08753.6 gi|549455055|ref|YP_008603814.1| - 4.7e-05 23.2 0.8 0.0001 22.0 0.2 1.8 1 1 1 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|549455055|ref|YP_008603814.1| - 0.00084 19.1 0.7 0.0018 18.1 0.5 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Creatininase PF02633.9 gi|549455055|ref|YP_008603814.1| - 0.01 14.9 0.1 0.013 14.6 0.1 1.1 1 0 0 1 1 1 0 Creatinine amidohydrolase BcrAD_BadFG PF01869.15 gi|549455055|ref|YP_008603814.1| - 0.032 13.5 0.1 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Glyco_tran_WbsX PF14307.1 gi|549455056|ref|YP_008603815.1| - 0.00047 19.4 4.3 0.049 12.7 0.3 2.8 3 1 0 4 4 4 2 Glycosyltransferase WbsX ATP_bind_3 PF01171.15 gi|549455057|ref|YP_008603816.1| - 4.5e-09 36.0 0.0 8.2e-09 35.2 0.0 1.4 1 1 0 1 1 1 1 PP-loop family DZR PF12773.2 gi|549455057|ref|YP_008603816.1| - 0.00087 19.0 7.5 0.021 14.6 0.4 3.2 3 0 0 3 3 3 2 Double zinc ribbon NAD_synthase PF02540.12 gi|549455057|ref|YP_008603816.1| - 0.00093 18.1 0.0 0.0014 17.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase zf-dskA_traR PF01258.12 gi|549455057|ref|YP_008603816.1| - 0.091 12.5 15.3 0.2 11.4 2.5 4.0 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|549455057|ref|YP_008603816.1| - 2.1 8.2 12.2 0.2 11.5 1.3 3.3 3 0 0 3 3 3 0 Transposase zinc-ribbon domain Ribosomal_L13e PF01294.13 gi|549455058|ref|YP_008603817.1| - 6.3e-10 38.7 0.0 6.9e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e MobB PF03205.9 gi|549455059|ref|YP_008603818.1| - 1.3e-06 28.2 0.0 2.7e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|549455059|ref|YP_008603818.1| - 0.0018 17.7 0.0 0.0032 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|549455059|ref|YP_008603818.1| - 0.0089 16.8 0.1 0.063 14.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|549455059|ref|YP_008603818.1| - 0.014 15.3 0.0 0.025 14.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|549455059|ref|YP_008603818.1| - 0.027 14.0 0.0 0.055 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|549455059|ref|YP_008603818.1| - 0.035 14.3 0.1 0.065 13.5 0.0 1.4 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.18 gi|549455059|ref|YP_008603818.1| - 0.04 13.8 0.0 0.085 12.8 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|549455059|ref|YP_008603818.1| - 0.083 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain MFS_1 PF07690.11 gi|549455061|ref|YP_008603820.1| - 6.4e-11 41.5 47.6 6.4e-11 41.5 33.0 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|549455061|ref|YP_008603820.1| - 0.039 13.7 3.4 4.7 7.0 0.0 3.3 3 0 0 3 3 3 0 MFS_1 like family LacY_symp PF01306.14 gi|549455061|ref|YP_008603820.1| - 0.15 10.5 8.5 0.59 8.6 5.9 1.9 1 1 0 1 1 1 0 LacY proton/sugar symporter UPRTase PF14681.1 gi|549455062|ref|YP_008603821.1| - 7.1e-43 146.2 0.0 9.2e-43 145.8 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|549455062|ref|YP_008603821.1| - 1.6e-06 27.8 0.1 2.6e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain THUMP PF02926.12 gi|549455063|ref|YP_008603822.1| - 1.5e-25 89.7 0.0 4.2e-25 88.3 0.0 1.8 1 0 0 1 1 1 1 THUMP domain Ribosomal_L21e PF01157.13 gi|549455064|ref|YP_008603823.1| - 9.1e-24 83.1 0.0 1e-23 82.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|549455065|ref|YP_008603824.1| - 3.6e-08 33.4 0.0 3.8e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF655 PF04919.7 gi|549455066|ref|YP_008603825.1| - 2.1e-82 275.2 0.1 2.5e-82 274.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|549455066|ref|YP_008603825.1| - 0.00061 19.6 0.3 0.00061 19.6 0.2 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|549455066|ref|YP_008603825.1| - 0.00081 19.3 0.6 0.0041 17.1 0.1 2.2 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|549455066|ref|YP_008603825.1| - 0.016 14.9 2.6 0.02 14.5 0.0 2.5 3 0 0 3 3 3 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|549455066|ref|YP_008603825.1| - 0.084 13.0 0.6 0.54 10.4 0.1 2.3 2 1 0 2 2 2 0 Helix-hairpin-helix domain RrnaAD PF00398.15 gi|549455067|ref|YP_008603826.1| - 7.8e-29 100.4 0.0 1e-28 100.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|549455067|ref|YP_008603826.1| - 0.045 13.1 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DREV PF05219.7 gi|549455067|ref|YP_008603826.1| - 0.17 10.7 0.0 0.27 10.0 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase PrmA PF06325.8 gi|549455068|ref|YP_008603827.1| - 4e-08 32.7 0.1 5.6e-08 32.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|549455068|ref|YP_008603827.1| - 1.2e-07 31.8 0.7 2.8e-07 30.5 0.3 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|549455068|ref|YP_008603827.1| - 8.1e-05 23.1 0.1 0.00013 22.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|549455068|ref|YP_008603827.1| - 0.0016 17.8 0.1 0.0025 17.2 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|549455068|ref|YP_008603827.1| - 0.67 9.3 3.6 5.6 6.3 0.0 2.8 3 0 0 3 3 3 0 Conserved hypothetical protein 95 SpoU_methylase PF00588.14 gi|549455069|ref|YP_008603828.1| - 1.2e-27 96.5 0.0 1.9e-27 95.8 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family UPF0020 PF01170.13 gi|549455070|ref|YP_008603829.1| - 5.7e-52 175.8 0.0 7.6e-52 175.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|549455070|ref|YP_008603829.1| - 1.4e-26 92.7 0.2 3.2e-26 91.6 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|549455070|ref|YP_008603829.1| - 3.2e-19 69.2 0.0 4.8e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 THUMP domain MTS PF05175.9 gi|549455070|ref|YP_008603829.1| - 2.5e-12 46.5 0.0 4.9e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|549455070|ref|YP_008603829.1| - 1.6e-08 34.3 0.0 2.7e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|549455070|ref|YP_008603829.1| - 8.9e-08 31.8 0.0 1.5e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|549455070|ref|YP_008603829.1| - 3.9e-05 23.2 0.0 5.9e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|549455070|ref|YP_008603829.1| - 0.00046 20.7 0.0 0.0015 19.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|549455070|ref|YP_008603829.1| - 0.00085 18.5 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|549455070|ref|YP_008603829.1| - 0.00099 18.5 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.11 gi|549455070|ref|YP_008603829.1| - 0.0026 16.8 0.0 0.0074 15.4 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.7 gi|549455070|ref|YP_008603829.1| - 0.0036 17.7 0.0 0.026 14.9 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|549455070|ref|YP_008603829.1| - 0.0046 16.0 0.0 0.007 15.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase N6_N4_Mtase PF01555.13 gi|549455070|ref|YP_008603829.1| - 0.03 13.8 0.0 0.05 13.0 0.0 1.4 2 0 0 2 2 2 0 DNA methylase Peripla_BP_6 PF13458.1 gi|549455071|ref|YP_008603830.1| - 1.8e-37 129.4 4.0 2.2e-37 129.1 2.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|549455071|ref|YP_008603830.1| - 8e-09 34.7 0.0 2.2e-08 33.3 0.0 1.7 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|549455071|ref|YP_008603830.1| - 8e-07 28.1 0.0 0.0049 15.6 0.0 2.4 2 1 0 2 2 2 2 Periplasmic binding protein domain Peripla_BP_4 PF13407.1 gi|549455071|ref|YP_008603830.1| - 1.5e-06 27.7 0.2 3.5e-05 23.2 0.0 2.3 2 0 0 2 2 2 1 Periplasmic binding protein domain Fe-ADH_2 PF13685.1 gi|549455071|ref|YP_008603830.1| - 6.2e-05 22.4 0.0 0.00011 21.6 0.0 1.3 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|549455071|ref|YP_008603830.1| - 0.00019 20.1 0.0 0.00048 18.8 0.0 1.6 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DUF2139 PF09910.4 gi|549455072|ref|YP_008603831.1| - 3.6e-161 535.8 0.0 5e-161 535.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) F420_oxidored PF03807.12 gi|549455073|ref|YP_008603832.1| - 2.3e-10 40.7 0.2 4.4e-10 39.8 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.12 gi|549455073|ref|YP_008603832.1| - 1.4e-08 33.9 0.0 1.7e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|549455073|ref|YP_008603832.1| - 4.7e-08 33.0 0.1 6.9e-08 32.4 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|549455073|ref|YP_008603832.1| - 1.5e-06 27.4 0.0 2.6e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|549455073|ref|YP_008603832.1| - 0.0016 18.1 0.3 0.0031 17.2 0.2 1.4 1 0 0 1 1 1 1 Rossmann-like domain GFO_IDH_MocA PF01408.17 gi|549455073|ref|YP_008603832.1| - 0.0027 18.1 0.1 0.0057 17.1 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold XdhC_C PF13478.1 gi|549455073|ref|YP_008603832.1| - 0.0081 16.4 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|549455073|ref|YP_008603832.1| - 0.024 14.2 0.8 0.047 13.3 0.5 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|549455073|ref|YP_008603832.1| - 0.059 13.0 1.5 1.5 8.5 0.5 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CM_2 PF01817.16 gi|549455074|ref|YP_008603833.1| - 1.6e-14 53.7 4.8 2.1e-14 53.3 3.3 1.2 1 0 0 1 1 1 1 Chorismate mutase type II HSBP1 PF06825.7 gi|549455074|ref|YP_008603833.1| - 0.053 13.0 1.8 0.076 12.5 1.2 1.3 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Chorismate_synt PF01264.16 gi|549455075|ref|YP_008603834.1| - 4.3e-127 423.3 0.0 5e-127 423.1 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.15 gi|549455076|ref|YP_008603835.1| - 2.5e-89 299.6 0.0 2.8e-89 299.4 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GHMP_kinases_C PF08544.8 gi|549455077|ref|YP_008603836.1| - 6.6e-07 29.4 2.0 2.1e-06 27.8 1.4 1.9 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|549455077|ref|YP_008603836.1| - 0.00014 21.8 2.7 0.00014 21.8 1.9 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain Shikimate_dh_N PF08501.6 gi|549455078|ref|YP_008603837.1| - 9.1e-16 57.6 0.0 1.7e-15 56.8 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|549455078|ref|YP_008603837.1| - 9.3e-13 48.4 0.0 1.4e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|549455078|ref|YP_008603837.1| - 2.6e-05 23.3 0.0 3.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|549455078|ref|YP_008603837.1| - 0.00011 22.5 1.3 0.00019 21.7 0.9 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.20 gi|549455078|ref|YP_008603837.1| - 0.00093 19.1 3.8 0.0017 18.3 2.6 1.4 1 0 0 1 1 1 1 short chain dehydrogenase ThiF PF00899.16 gi|549455078|ref|YP_008603837.1| - 0.001 18.8 1.0 0.0021 17.8 0.7 1.4 1 0 0 1 1 1 1 ThiF family OCD_Mu_crystall PF02423.10 gi|549455078|ref|YP_008603837.1| - 0.0038 16.0 0.1 0.0062 15.3 0.0 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family KR PF08659.5 gi|549455078|ref|YP_008603837.1| - 0.0071 16.0 1.8 0.011 15.4 1.3 1.3 1 0 0 1 1 1 1 KR domain GIDA PF01134.17 gi|549455078|ref|YP_008603837.1| - 0.094 11.5 5.9 0.12 11.1 4.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A PK_C PF02887.11 gi|549455078|ref|YP_008603837.1| - 0.11 12.0 0.2 0.22 11.1 0.2 1.4 1 0 0 1 1 1 0 Pyruvate kinase, alpha/beta domain AAA_19 PF13245.1 gi|549455078|ref|YP_008603837.1| - 0.13 12.0 2.7 0.31 10.8 1.9 1.7 1 0 0 1 1 1 0 Part of AAA domain FAD_binding_2 PF00890.19 gi|549455078|ref|YP_008603837.1| - 0.76 8.5 13.3 0.061 12.1 5.8 1.6 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_2 PF07992.9 gi|549455078|ref|YP_008603837.1| - 3.7 7.3 6.7 0.58 10.0 1.6 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DHquinase_I PF01487.10 gi|549455079|ref|YP_008603838.1| - 5.1e-11 42.6 0.0 6.5e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Type I 3-dehydroquinase DHQ_synthase PF01761.15 gi|549455080|ref|YP_008603839.1| - 8.7e-70 234.6 0.0 1.2e-69 234.1 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.1 gi|549455080|ref|YP_008603839.1| - 0.0029 16.9 1.0 0.019 14.2 0.0 2.0 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.15 gi|549455081|ref|YP_008603840.1| - 2.9e-82 275.4 0.0 3.5e-82 275.1 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|549455081|ref|YP_008603840.1| - 4.1e-06 26.1 0.0 8.8e-06 25.0 0.0 1.5 1 1 0 1 1 1 1 NeuB family PGM_PMM_II PF02879.11 gi|549455081|ref|YP_008603840.1| - 0.0043 17.3 0.0 0.0096 16.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Nsp1 PF11501.3 gi|549455081|ref|YP_008603840.1| - 0.021 14.6 0.4 0.092 12.5 0.0 2.2 3 0 0 3 3 3 0 Non structural protein Nsp1 PEP_mutase PF13714.1 gi|549455081|ref|YP_008603840.1| - 0.039 13.1 0.0 0.074 12.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Transket_pyr PF02779.19 gi|549455082|ref|YP_008603841.1| - 7.1e-32 110.3 0.0 1.4e-31 109.3 0.0 1.4 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|549455082|ref|YP_008603841.1| - 6e-26 90.7 0.0 1.1e-25 89.9 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Transketolase_N PF00456.16 gi|549455083|ref|YP_008603842.1| - 4.3e-27 94.8 0.0 9.6e-27 93.6 0.0 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|549455083|ref|YP_008603842.1| - 1.6e-05 24.0 0.0 3.1e-05 23.0 0.0 1.4 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|549455083|ref|YP_008603842.1| - 0.0015 17.3 0.0 0.0021 16.8 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component XFP_N PF09364.5 gi|549455083|ref|YP_008603842.1| - 0.014 13.9 0.0 0.017 13.6 0.0 1.1 1 0 0 1 1 1 0 XFP N-terminal domain NPCBM_assoc PF10633.4 gi|549455084|ref|YP_008603843.1| - 0.038 14.0 0.0 16 5.5 0.0 2.9 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4352 PF11611.3 gi|549455084|ref|YP_008603843.1| - 0.049 13.7 0.3 0.83 9.8 0.1 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4352) Alginate_lyase PF05426.7 gi|549455084|ref|YP_008603843.1| - 0.2 10.9 6.3 2.4 7.4 0.7 3.1 3 0 0 3 3 3 0 Alginate lyase Yae1_N PF09811.4 gi|549455085|ref|YP_008603844.1| - 0.1 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Essential protein Yae1, N terminal ECH PF00378.15 gi|549455086|ref|YP_008603845.1| - 1.3e-41 142.3 0.0 1.5e-41 142.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family InaF-motif PF15018.1 gi|549455088|ref|YP_008603847.1| - 6 6.3 17.9 2.2 7.7 1.7 3.4 3 0 0 3 3 3 0 TRP-interacting helix HTH_45 PF14947.1 gi|549455089|ref|YP_008603848.1| - 2e-16 59.5 0.0 2.2e-16 59.4 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|549455089|ref|YP_008603848.1| - 2.4e-06 27.1 0.0 3.5e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|549455089|ref|YP_008603848.1| - 3.1e-05 23.5 0.0 5.1e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|549455089|ref|YP_008603848.1| - 5.2e-05 23.4 0.1 7.4e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|549455089|ref|YP_008603848.1| - 6.8e-05 22.1 0.2 0.00021 20.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding FeoC PF09012.5 gi|549455089|ref|YP_008603848.1| - 0.0037 16.9 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|549455089|ref|YP_008603848.1| - 0.0079 16.2 0.0 0.012 15.7 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_42 PF06224.7 gi|549455089|ref|YP_008603848.1| - 0.0096 15.2 0.1 0.011 15.1 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|549455089|ref|YP_008603848.1| - 0.011 15.3 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_20 PF12840.2 gi|549455089|ref|YP_008603848.1| - 0.012 15.4 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4364 PF14277.1 gi|549455089|ref|YP_008603848.1| - 0.013 15.1 0.0 0.014 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_34 PF13601.1 gi|549455089|ref|YP_008603848.1| - 0.016 15.1 0.0 0.02 14.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|549455089|ref|YP_008603848.1| - 0.053 13.6 0.0 0.065 13.3 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor AphA_like PF14557.1 gi|549455089|ref|YP_008603848.1| - 0.057 12.9 0.1 0.093 12.2 0.0 1.3 1 1 0 1 1 1 0 Putative AphA-like transcriptional regulator EAP30 PF04157.11 gi|549455089|ref|YP_008603848.1| - 0.066 12.3 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family MarR PF01047.17 gi|549455089|ref|YP_008603848.1| - 0.082 12.6 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|549455089|ref|YP_008603848.1| - 0.13 11.7 0.1 0.96 8.9 0.0 1.9 1 1 1 2 2 2 0 TFIIE alpha subunit Pyr_redox_2 PF07992.9 gi|549455090|ref|YP_008603849.1| - 2.1e-15 57.1 0.0 2.9e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|549455090|ref|YP_008603849.1| - 8.6e-05 22.3 0.0 0.2 11.4 0.0 2.3 1 1 1 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|549455090|ref|YP_008603849.1| - 0.00038 20.8 0.0 0.0032 17.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|549455090|ref|YP_008603849.1| - 0.0034 17.4 0.0 0.18 11.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|549455090|ref|YP_008603849.1| - 0.009 14.9 0.8 0.18 10.7 0.1 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|549455090|ref|YP_008603849.1| - 0.014 14.0 0.0 0.02 13.5 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|549455090|ref|YP_008603849.1| - 0.016 15.2 0.2 0.048 13.6 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain IncA PF04156.9 gi|549455092|ref|YP_008603851.1| - 6.3e-05 22.6 0.1 7.5e-05 22.4 0.1 1.0 1 0 0 1 1 1 1 IncA protein DUF1517 PF07466.6 gi|549455092|ref|YP_008603851.1| - 0.0007 18.6 0.0 0.00073 18.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1517) DivIC PF04977.10 gi|549455092|ref|YP_008603851.1| - 0.0062 15.9 0.9 0.013 14.9 0.6 1.5 1 1 0 1 1 1 1 Septum formation initiator Tic20 PF09685.5 gi|549455092|ref|YP_008603851.1| - 0.011 15.7 0.7 0.011 15.7 0.5 1.1 1 0 0 1 1 1 0 Tic20-like protein HR1 PF02185.11 gi|549455092|ref|YP_008603851.1| - 0.014 15.1 0.7 0.016 14.9 0.5 1.1 1 0 0 1 1 1 0 Hr1 repeat DUF2207 PF09972.4 gi|549455092|ref|YP_008603851.1| - 0.017 13.7 0.1 0.018 13.6 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Yip1 PF04893.12 gi|549455092|ref|YP_008603851.1| - 0.018 14.5 4.8 0.021 14.3 3.3 1.1 1 0 0 1 1 1 0 Yip1 domain Bap31 PF05529.7 gi|549455092|ref|YP_008603851.1| - 0.027 13.9 0.0 0.034 13.5 0.0 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF4446 PF14584.1 gi|549455092|ref|YP_008603851.1| - 0.087 12.6 0.1 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF2140 PF09911.4 gi|549455092|ref|YP_008603851.1| - 0.13 11.3 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2140) ATG27 PF09451.5 gi|549455092|ref|YP_008603851.1| - 0.13 11.4 1.2 0.17 11.1 0.8 1.1 1 0 0 1 1 1 0 Autophagy-related protein 27 DUF3562 PF12085.3 gi|549455094|ref|YP_008603853.1| - 0.026 14.3 0.6 0.049 13.4 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) B12-binding_2 PF02607.12 gi|549455095|ref|YP_008603854.1| - 0.024 14.6 0.3 0.037 14.0 0.2 1.4 1 1 0 1 1 1 0 B12 binding domain STAT_int PF02865.12 gi|549455095|ref|YP_008603854.1| - 0.14 12.0 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 STAT protein, protein interaction domain DUF4319 PF14203.1 gi|549455096|ref|YP_008603855.1| - 0.00083 18.8 0.4 0.0025 17.3 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4319) Bacillus_HBL PF05791.6 gi|549455097|ref|YP_008603856.1| - 0.026 13.8 0.2 0.056 12.8 0.1 1.5 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Docking PF08990.6 gi|549455097|ref|YP_008603856.1| - 0.04 13.1 0.0 0.089 12.0 0.0 1.6 2 0 0 2 2 2 0 Erythronolide synthase docking Rnk_N PF14760.1 gi|549455102|ref|YP_008603861.1| - 0.13 12.3 0.4 0.13 12.3 0.3 3.6 3 1 0 3 3 3 0 Rnk N-terminus HTH_28 PF13518.1 gi|549455103|ref|YP_008603862.1| - 0.0021 18.0 0.0 0.0059 16.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|549455103|ref|YP_008603862.1| - 0.0029 17.2 0.0 0.0049 16.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|549455103|ref|YP_008603862.1| - 0.015 15.1 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Tnp_1 PF01527.15 gi|549455103|ref|YP_008603862.1| - 0.082 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Transposase NUDIX PF00293.23 gi|549455104|ref|YP_008603863.1| - 1.1e-17 63.9 0.1 1.5e-17 63.4 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain MoaE PF02391.12 gi|549455107|ref|YP_008603866.1| - 2.5e-17 62.7 1.1 3.6e-17 62.2 0.8 1.2 1 0 0 1 1 1 1 MoaE protein VWA_2 PF13519.1 gi|549455109|ref|YP_008603868.1| - 7.4e-21 75.0 0.0 9.1e-21 74.7 0.0 1.0 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|549455109|ref|YP_008603868.1| - 1.3e-10 41.2 0.0 1.6e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain GARS_C PF02843.11 gi|549455109|ref|YP_008603868.1| - 0.046 13.8 0.1 0.089 12.9 0.0 1.6 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, C domain BMC PF00936.14 gi|549455109|ref|YP_008603868.1| - 1.3 8.7 4.2 7.2 6.3 1.6 2.4 1 1 1 2 2 2 0 BMC domain UPF0175 PF03683.8 gi|549455110|ref|YP_008603869.1| - 0.00049 19.5 0.1 0.0011 18.3 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) PIN_4 PF13638.1 gi|549455110|ref|YP_008603869.1| - 0.023 14.7 0.0 0.073 13.1 0.0 1.7 2 0 0 2 2 2 0 PIN domain Peptidase_S8 PF00082.17 gi|549455111|ref|YP_008603870.1| - 3.2e-28 98.6 6.5 6.9e-28 97.5 4.5 1.6 1 1 0 1 1 1 1 Subtilase family EF-hand_1 PF00036.27 gi|549455111|ref|YP_008603870.1| - 2.4 7.6 3.1 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 EF hand Laminin_II PF06009.7 gi|549455112|ref|YP_008603871.1| - 2e-06 27.6 24.8 0.015 15.0 2.0 4.7 2 2 1 4 4 4 3 Laminin Domain II Reo_sigmaC PF04582.7 gi|549455112|ref|YP_008603871.1| - 3.5e-06 26.4 42.5 0.012 14.7 2.3 4.1 1 1 3 4 4 4 4 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|549455112|ref|YP_008603871.1| - 1.1e-05 25.2 46.4 0.032 14.0 6.6 4.2 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.7 gi|549455112|ref|YP_008603871.1| - 2.2e-05 24.2 22.5 0.037 13.8 0.2 5.1 1 1 3 5 5 5 3 Protein of unknown function (DUF1664) NPV_P10 PF05531.7 gi|549455112|ref|YP_008603871.1| - 3e-05 24.1 49.5 0.0045 17.2 0.2 7.2 1 1 5 6 6 6 3 Nucleopolyhedrovirus P10 protein EzrA PF06160.7 gi|549455112|ref|YP_008603871.1| - 3.1e-05 22.3 10.6 0.00094 17.4 7.3 2.1 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA MCPsignal PF00015.16 gi|549455112|ref|YP_008603871.1| - 7.8e-05 22.3 34.5 0.056 12.9 5.8 4.1 1 1 1 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain AAA_13 PF13166.1 gi|549455112|ref|YP_008603871.1| - 0.00022 19.8 8.0 0.17 10.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain RmuC PF02646.11 gi|549455112|ref|YP_008603871.1| - 0.0015 17.4 7.3 0.42 9.3 0.2 3.5 2 1 0 3 3 3 2 RmuC family Syntaxin PF00804.20 gi|549455112|ref|YP_008603871.1| - 0.0019 18.3 12.0 1 9.5 0.3 4.2 2 2 1 3 3 3 1 Syntaxin EMP24_GP25L PF01105.19 gi|549455112|ref|YP_008603871.1| - 0.002 17.8 1.1 0.015 15.0 0.0 2.7 2 2 0 2 2 2 1 emp24/gp25L/p24 family/GOLD DUF3584 PF12128.3 gi|549455112|ref|YP_008603871.1| - 0.004 14.5 4.3 0.0057 14.0 3.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) IFT57 PF10498.4 gi|549455112|ref|YP_008603871.1| - 0.0049 15.6 5.2 0.48 9.1 0.0 2.5 2 1 0 2 2 2 2 Intra-flagellar transport protein 57 WEMBL PF05701.6 gi|549455112|ref|YP_008603871.1| - 0.0051 15.3 14.8 0.046 12.1 3.2 2.6 1 1 1 3 3 3 2 Weak chloroplast movement under blue light Spc7 PF08317.6 gi|549455112|ref|YP_008603871.1| - 0.01 14.4 12.4 0.021 13.5 1.9 3.0 1 1 1 3 3 3 0 Spc7 kinetochore protein Snapin_Pallidin PF14712.1 gi|549455112|ref|YP_008603871.1| - 0.037 14.3 9.4 3.8 7.8 0.1 4.1 3 2 1 4 4 4 0 Snapin/Pallidin Spectrin PF00435.16 gi|549455112|ref|YP_008603871.1| - 0.045 14.0 4.2 1 9.6 0.6 2.8 2 1 0 2 2 2 0 Spectrin repeat Filament PF00038.16 gi|549455112|ref|YP_008603871.1| - 0.055 12.9 4.7 1.3 8.4 1.6 2.3 1 1 1 2 2 2 0 Intermediate filament protein DUF869 PF05911.6 gi|549455112|ref|YP_008603871.1| - 0.062 11.5 15.4 0.023 12.9 7.0 1.9 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) TMF_TATA_bd PF12325.3 gi|549455112|ref|YP_008603871.1| - 0.086 12.5 9.4 0.64 9.7 0.8 3.7 2 2 1 4 4 4 0 TATA element modulatory factor 1 TATA binding FlaC_arch PF05377.6 gi|549455112|ref|YP_008603871.1| - 0.09 12.6 13.4 6.7 6.6 0.3 6.1 4 3 2 6 6 6 0 Flagella accessory protein C (FlaC) COG5 PF10392.4 gi|549455112|ref|YP_008603871.1| - 0.11 12.4 8.7 4.9 7.1 0.9 3.9 1 1 4 5 5 5 0 Golgi transport complex subunit 5 DUF4511 PF14974.1 gi|549455112|ref|YP_008603871.1| - 0.13 11.9 0.1 0.42 10.3 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4511) MscS_porin PF12795.2 gi|549455112|ref|YP_008603871.1| - 0.15 11.3 11.2 1.5 8.0 0.1 3.2 3 1 1 4 4 4 0 Mechanosensitive ion channel porin domain TBPIP PF07106.8 gi|549455112|ref|YP_008603871.1| - 0.16 11.4 6.3 5.3 6.5 0.0 3.5 1 1 0 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Sec34 PF04136.10 gi|549455112|ref|YP_008603871.1| - 0.24 11.1 11.6 4.8 6.8 0.1 4.4 1 1 4 5 5 5 0 Sec34-like family DivIVA PF05103.8 gi|549455112|ref|YP_008603871.1| - 0.29 11.1 9.9 1.4 8.9 1.7 4.0 4 1 0 4 4 3 0 DivIVA protein Rootletin PF15035.1 gi|549455112|ref|YP_008603871.1| - 0.35 10.8 0.1 1.3 8.9 0.0 1.9 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion Tropomyosin PF00261.15 gi|549455112|ref|YP_008603871.1| - 0.37 9.8 2.6 11 5.0 0.1 2.3 2 0 0 2 2 2 0 Tropomyosin AF0941-like PF14591.1 gi|549455112|ref|YP_008603871.1| - 0.4 10.7 4.2 0.25 11.3 0.5 2.4 2 1 1 3 3 2 0 AF0941-like GAS PF13851.1 gi|549455112|ref|YP_008603871.1| - 0.46 9.6 0.6 26 3.9 0.0 2.4 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.7 gi|549455112|ref|YP_008603871.1| - 0.52 10.0 5.4 10 5.8 0.0 2.7 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Vps5 PF09325.5 gi|549455112|ref|YP_008603871.1| - 0.57 9.3 10.2 0.57 9.3 0.4 2.6 2 1 0 2 2 2 0 Vps5 C terminal like Atg14 PF10186.4 gi|549455112|ref|YP_008603871.1| - 0.78 8.6 0.6 2.5 6.9 0.3 1.8 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 AAA_27 PF13514.1 gi|549455112|ref|YP_008603871.1| - 0.79 7.3 12.0 1.7 6.1 8.3 1.4 1 1 0 1 1 1 0 AAA domain GLE1 PF07817.8 gi|549455112|ref|YP_008603871.1| - 0.82 8.5 1.0 8.4 5.2 0.0 2.3 2 0 0 2 2 2 0 GLE1-like protein Med15_fungi PF05397.7 gi|549455112|ref|YP_008603871.1| - 1.1 9.2 5.6 4.1 7.3 0.1 3.3 2 1 1 3 3 3 0 Mediator complex subunit 15 COG2 PF06148.6 gi|549455112|ref|YP_008603871.1| - 1.4 8.8 17.5 8.4 6.2 0.5 4.9 1 1 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF948 PF06103.6 gi|549455112|ref|YP_008603871.1| - 1.9 8.4 40.7 0.38 10.6 2.5 5.9 2 1 3 6 6 6 0 Bacterial protein of unknown function (DUF948) DUF972 PF06156.8 gi|549455112|ref|YP_008603871.1| - 2 8.8 8.2 11 6.4 0.2 4.1 2 2 1 3 3 3 0 Protein of unknown function (DUF972) DUF16 PF01519.11 gi|549455112|ref|YP_008603871.1| - 3 8.1 5.1 18 5.6 0.7 2.9 2 1 0 2 2 2 0 Protein of unknown function DUF16 DUF2408 PF10303.4 gi|549455112|ref|YP_008603871.1| - 4 7.5 5.3 8.1 6.5 0.8 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) LOH1CR12 PF10158.4 gi|549455112|ref|YP_008603871.1| - 4.2 7.1 5.2 2.4 7.9 0.1 2.9 2 1 0 3 3 3 0 Tumour suppressor protein DUF812 PF05667.6 gi|549455112|ref|YP_008603871.1| - 4.8 5.5 11.0 2.8 6.3 4.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Cortex-I_coil PF09304.5 gi|549455112|ref|YP_008603871.1| - 5.7 7.0 6.0 44 4.1 0.4 3.0 3 0 0 3 3 3 0 Cortexillin I, coiled coil CALCOCO1 PF07888.6 gi|549455112|ref|YP_008603871.1| - 8.1 4.6 16.0 0.21 9.8 2.0 2.1 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF3407 PF11887.3 gi|549455112|ref|YP_008603871.1| - 9.2 5.4 26.1 0.39 9.9 2.8 3.5 1 1 2 4 4 4 0 Protein of unknown function (DUF3407) DHC_N2 PF08393.8 gi|549455112|ref|YP_008603871.1| - 9.8 4.5 7.7 2.3 6.6 1.4 2.3 1 1 1 2 2 2 0 Dynein heavy chain, N-terminal region 2 CarboxypepD_reg PF13620.1 gi|549455115|ref|YP_008603874.1| - 1.7e-34 117.7 34.1 6.4e-10 38.9 1.5 12.7 12 1 0 12 12 12 8 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|549455115|ref|YP_008603874.1| - 3.1e-17 62.0 6.9 0.00027 20.6 0.0 8.1 8 0 0 8 8 8 5 PEGA domain DUF4480 PF13715.1 gi|549455115|ref|YP_008603874.1| - 4e-16 58.8 0.0 9.2e-06 25.6 0.0 8.5 8 2 2 10 10 10 2 Domain of unknown function (DUF4480) DUF2012 PF09430.5 gi|549455115|ref|YP_008603874.1| - 9.1e-07 28.7 1.0 4.7 7.0 0.0 6.5 6 1 1 7 7 7 1 Protein of unknown function (DUF2012) MG1 PF11974.3 gi|549455115|ref|YP_008603874.1| - 1.4e-05 25.5 0.5 0.00093 19.7 0.0 3.7 3 0 0 3 3 3 1 Alpha-2-macroglobulin MG1 domain phage_tail_N PF08400.5 gi|549455115|ref|YP_008603874.1| - 0.00021 20.9 12.7 0.017 14.7 0.0 6.1 6 1 1 7 7 7 2 Prophage tail fibre N-terminal DUF1416 PF07210.7 gi|549455115|ref|YP_008603874.1| - 0.012 15.1 0.1 0.093 12.3 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1416) DUF4399 PF14347.1 gi|549455115|ref|YP_008603874.1| - 0.053 13.5 0.4 20 5.2 0.0 5.3 8 0 0 8 8 8 0 Domain of unknown function (DUF4399) Y_Y_Y PF07495.8 gi|549455115|ref|YP_008603874.1| - 0.11 12.3 4.7 11 5.8 0.1 5.8 7 1 0 7 7 7 0 Y_Y_Y domain DUF4249 PF14054.1 gi|549455115|ref|YP_008603874.1| - 0.43 9.9 1.4 22 4.2 0.1 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4249) MazG PF03819.12 gi|549455116|ref|YP_008603875.1| - 2.2e-12 46.7 0.2 3.2e-12 46.2 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|549455116|ref|YP_008603875.1| - 2.1e-06 27.9 0.2 2.3e-06 27.7 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.2 gi|549455116|ref|YP_008603875.1| - 0.00037 20.3 0.0 0.00051 19.9 0.0 1.2 1 0 0 1 1 1 1 MazG-like family PcrB PF01884.12 gi|549455117|ref|YP_008603876.1| - 6.6e-62 208.7 0.0 8e-62 208.5 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|549455117|ref|YP_008603876.1| - 2.4e-07 30.2 0.1 6e-07 28.9 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein B12-binding PF02310.14 gi|549455117|ref|YP_008603876.1| - 0.00042 20.1 1.1 0.079 12.8 0.0 2.4 2 0 0 2 2 2 2 B12 binding domain NanE PF04131.9 gi|549455117|ref|YP_008603876.1| - 0.0016 17.4 1.1 0.35 9.8 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.14 gi|549455117|ref|YP_008603876.1| - 0.0054 15.8 0.0 0.011 14.7 0.0 1.5 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PucR PF07905.6 gi|549455117|ref|YP_008603876.1| - 0.0078 15.7 0.1 0.49 9.9 0.0 2.5 2 1 0 2 2 2 1 Purine catabolism regulatory protein-like family Glu_synthase PF01645.12 gi|549455117|ref|YP_008603876.1| - 0.0088 15.0 3.9 0.031 13.1 0.1 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase FAD_binding_4 PF01565.18 gi|549455117|ref|YP_008603876.1| - 0.023 14.1 0.3 1 8.8 0.0 2.5 2 0 0 2 2 2 0 FAD binding domain ETF PF01012.16 gi|549455117|ref|YP_008603876.1| - 0.025 14.2 0.5 0.025 14.2 0.3 1.9 2 0 0 2 2 2 0 Electron transfer flavoprotein domain DeoC PF01791.4 gi|549455117|ref|YP_008603876.1| - 0.064 12.5 0.4 1 8.5 0.1 2.2 2 1 0 2 2 2 0 DeoC/LacD family aldolase Trp_syntA PF00290.15 gi|549455117|ref|YP_008603876.1| - 0.071 11.6 0.0 3.5 6.0 0.0 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain DAGK_cat PF00781.19 gi|549455117|ref|YP_008603876.1| - 0.075 12.4 0.3 0.32 10.4 0.1 2.0 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Elf1 PF05129.8 gi|549455118|ref|YP_008603877.1| - 3e-21 74.8 0.3 3.7e-21 74.5 0.2 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-CSL PF05207.8 gi|549455118|ref|YP_008603877.1| - 0.0013 18.1 0.7 0.0019 17.6 0.5 1.3 1 0 0 1 1 1 1 CSL zinc finger Lar_restr_allev PF14354.1 gi|549455118|ref|YP_008603877.1| - 0.0016 18.7 1.2 0.0027 17.9 0.8 1.6 1 1 0 1 1 1 1 Restriction alleviation protein Lar Molybdop_Fe4S4 PF04879.11 gi|549455118|ref|YP_008603877.1| - 0.056 13.2 0.5 0.056 13.2 0.4 2.1 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain Nudix_N_2 PF14803.1 gi|549455118|ref|YP_008603877.1| - 0.15 11.7 2.1 6.6 6.5 0.5 2.5 2 0 0 2 2 2 0 Nudix N-terminal HypA PF01155.14 gi|549455118|ref|YP_008603877.1| - 0.25 11.0 1.3 3.3 7.4 0.0 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|549455118|ref|YP_008603877.1| - 0.37 10.3 2.5 8.3 6.0 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|549455118|ref|YP_008603877.1| - 0.46 10.7 6.2 0.41 10.8 1.0 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family TF_Zn_Ribbon PF08271.7 gi|549455118|ref|YP_008603877.1| - 0.5 9.7 8.4 1.8 7.9 0.0 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|549455118|ref|YP_008603877.1| - 1.1 8.5 9.1 0.57 9.4 3.4 2.4 2 1 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|549455118|ref|YP_008603877.1| - 1.4 8.7 5.6 0.7 9.7 0.1 2.3 1 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|549455118|ref|YP_008603877.1| - 1.7 8.2 6.0 7.8 6.1 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain AdoHcyase PF05221.12 gi|549455119|ref|YP_008603878.1| - 3.6e-71 239.2 0.0 4.5e-71 238.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|549455119|ref|YP_008603878.1| - 2.2e-60 203.2 0.8 3.9e-60 202.3 0.5 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|549455119|ref|YP_008603878.1| - 1e-11 44.3 0.3 2.7e-11 42.9 0.2 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|549455119|ref|YP_008603878.1| - 1e-08 34.7 0.4 1.8e-08 33.9 0.3 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|549455119|ref|YP_008603878.1| - 0.0018 18.2 1.4 0.0065 16.4 0.1 2.6 3 0 0 3 3 3 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|549455119|ref|YP_008603878.1| - 0.0038 16.8 3.1 0.0046 16.5 0.5 1.9 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|549455119|ref|YP_008603878.1| - 0.0074 15.9 2.4 0.012 15.3 0.4 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|549455119|ref|YP_008603878.1| - 0.12 11.8 0.8 0.24 10.9 0.5 1.5 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Zn_Tnp_IS1595 PF12760.2 gi|549455120|ref|YP_008603879.1| - 0.00091 18.9 0.3 0.0014 18.4 0.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Vps39_2 PF10367.4 gi|549455120|ref|YP_008603879.1| - 0.015 15.4 1.6 0.046 13.9 0.1 1.9 1 1 1 2 2 2 0 Vacuolar sorting protein 39 domain 2 zf-Mss51 PF13824.1 gi|549455120|ref|YP_008603879.1| - 0.035 13.9 0.4 0.065 13.1 0.3 1.6 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TFIIS_C PF01096.13 gi|549455120|ref|YP_008603879.1| - 0.036 13.7 2.5 0.14 11.8 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_ribbon_recom PF13408.1 gi|549455120|ref|YP_008603879.1| - 0.044 14.0 0.6 0.075 13.3 0.4 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Gin PF10764.4 gi|549455120|ref|YP_008603879.1| - 0.11 12.2 0.7 2.4 7.9 0.1 2.2 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin zf-FPG_IleRS PF06827.9 gi|549455120|ref|YP_008603879.1| - 0.67 9.6 4.1 1.5 8.5 0.2 2.8 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS VIT1 PF01988.14 gi|549455121|ref|YP_008603880.1| - 6.6e-17 61.7 23.3 1.5e-15 57.2 16.2 2.0 1 1 0 1 1 1 1 VIT family COX14 PF14880.1 gi|549455121|ref|YP_008603880.1| - 0.043 13.4 0.2 0.13 11.8 0.1 1.8 1 0 0 1 1 1 0 Cytochrome oxidase c assembly Synaptobrevin PF00957.16 gi|549455121|ref|YP_008603880.1| - 0.14 11.7 1.2 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 Synaptobrevin Peptidase_M20 PF01546.23 gi|549455122|ref|YP_008603881.1| - 2.4e-38 131.5 0.1 3.3e-38 131.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|549455122|ref|YP_008603881.1| - 9.5e-20 70.4 0.0 1.8e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain SBP_bac_5 PF00496.17 gi|549455122|ref|YP_008603881.1| - 0.12 11.1 0.0 0.18 10.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle Lactamase_B_2 PF12706.2 gi|549455123|ref|YP_008603882.1| - 1.1e-16 60.9 0.0 1.6e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|549455123|ref|YP_008603882.1| - 1.1e-12 47.9 0.1 9.9e-12 44.9 0.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|549455123|ref|YP_008603882.1| - 0.001 18.8 0.0 0.0011 18.6 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AdoMet_dc PF02675.10 gi|549455124|ref|YP_008603883.1| - 3.9e-32 110.3 0.0 4.4e-32 110.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Thioredoxin PF00085.15 gi|549455126|ref|YP_008603885.1| - 1.3e-05 24.7 0.0 3.5e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|549455126|ref|YP_008603885.1| - 3.4e-05 23.9 0.1 0.00019 21.5 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Radical_SAM PF04055.16 gi|549455127|ref|YP_008603886.1| - 5.2e-12 46.2 0.0 1.2e-11 45.0 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|549455127|ref|YP_008603886.1| - 6.9e-06 26.2 0.0 1.2e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|549455127|ref|YP_008603886.1| - 1.4e-05 25.1 0.0 2.6e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PPDK_N PF01326.14 gi|549455129|ref|YP_008603888.1| - 5.7e-100 334.5 0.1 1.1e-99 333.6 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|549455129|ref|YP_008603888.1| - 1e-82 277.3 0.0 1.5e-82 276.7 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|549455129|ref|YP_008603888.1| - 8.5e-30 102.1 0.9 1.9e-29 101.0 0.6 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Sec61_beta PF03911.11 gi|549455130|ref|YP_008603889.1| - 2.5e-14 52.7 0.7 2.8e-14 52.6 0.5 1.1 1 0 0 1 1 1 1 Sec61beta family THF_DHG_CYH_C PF02882.14 gi|549455130|ref|YP_008603889.1| - 0.043 12.8 0.0 0.045 12.8 0.0 1.1 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF1743 PF08489.6 gi|549455132|ref|YP_008603891.1| - 1.4e-28 99.0 0.0 2e-28 98.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.6 gi|549455132|ref|YP_008603891.1| - 9.7e-05 21.9 0.5 0.00017 21.1 0.3 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|549455132|ref|YP_008603891.1| - 0.0017 17.7 7.7 0.0043 16.5 5.3 1.7 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|549455132|ref|YP_008603891.1| - 0.0037 17.0 0.2 0.0065 16.2 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|549455132|ref|YP_008603891.1| - 0.0055 15.8 1.5 1.9 7.8 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|549455132|ref|YP_008603891.1| - 0.016 14.6 1.6 0.64 9.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain tRNA_anti-codon PF01336.20 gi|549455132|ref|YP_008603891.1| - 0.094 12.5 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain DUF1610 PF07754.6 gi|549455132|ref|YP_008603891.1| - 0.27 11.3 9.6 0.18 11.9 5.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-C2H2_4 PF13894.1 gi|549455132|ref|YP_008603891.1| - 0.36 11.2 2.3 3.8 8.0 0.3 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf-FPG_IleRS PF06827.9 gi|549455132|ref|YP_008603891.1| - 0.66 9.6 6.3 2.5 7.8 0.1 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|549455132|ref|YP_008603891.1| - 0.67 9.8 4.7 4.4 7.1 3.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-HIT PF04438.11 gi|549455132|ref|YP_008603891.1| - 1.2 8.8 3.9 5.8 6.6 0.2 2.3 2 0 0 2 2 2 0 HIT zinc finger AsnC_trans_reg PF01037.16 gi|549455133|ref|YP_008603892.1| - 6.9e-15 54.5 0.5 8e-15 54.3 0.4 1.1 1 0 0 1 1 1 1 AsnC family DUF1896 PF08989.5 gi|549455133|ref|YP_008603892.1| - 0.0055 16.5 0.0 0.0067 16.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1896) GYD PF08734.6 gi|549455133|ref|YP_008603892.1| - 0.019 14.6 0.1 0.031 13.9 0.1 1.5 1 1 0 1 1 1 0 GYD domain tRNA-synt_His PF13393.1 gi|549455135|ref|YP_008603894.1| - 4.1e-52 177.1 0.0 6.5e-52 176.5 0.0 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|549455135|ref|YP_008603894.1| - 5.7e-19 68.3 0.0 8.1e-19 67.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|549455135|ref|YP_008603894.1| - 1.4e-13 50.5 0.0 5.4e-13 48.7 0.0 1.9 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|549455135|ref|YP_008603894.1| - 0.00046 19.0 0.1 0.0045 15.8 0.0 2.3 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|549455135|ref|YP_008603894.1| - 0.0065 15.6 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) SWIM PF04434.12 gi|549455136|ref|YP_008603895.1| - 1.6e-05 24.2 0.0 2.6e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 SWIM zinc finger Rib_5-P_isom_A PF06026.9 gi|549455137|ref|YP_008603896.1| - 8.8e-47 158.6 0.0 1.1e-46 158.2 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TENA_THI-4 PF03070.11 gi|549455139|ref|YP_008603898.1| - 1.8e-56 191.2 0.2 2e-56 191.1 0.1 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Haem_oxygenas_2 PF14518.1 gi|549455139|ref|YP_008603898.1| - 0.098 12.8 0.0 0.34 11.0 0.0 1.9 2 0 0 2 2 2 0 Iron-containing redox enzyme TPR_14 PF13428.1 gi|549455139|ref|YP_008603898.1| - 0.23 12.1 1.8 2.3 9.1 0.1 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat MFS_1 PF07690.11 gi|549455140|ref|YP_008603899.1| - 7.4e-32 110.4 85.1 1.1e-27 96.6 36.0 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Ldh_1_N PF00056.18 gi|549455141|ref|YP_008603900.1| - 9.8e-39 132.3 0.2 1.4e-38 131.9 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|549455141|ref|YP_008603900.1| - 5e-25 88.2 0.0 9.7e-25 87.2 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|549455141|ref|YP_008603900.1| - 5.8e-05 22.4 0.8 0.0026 17.0 0.0 3.0 2 1 1 3 3 3 1 Family 4 glycosyl hydrolase Shikimate_DH PF01488.15 gi|549455141|ref|YP_008603900.1| - 0.0039 17.2 0.2 0.0077 16.3 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Pyr_redox_3 PF13738.1 gi|549455141|ref|YP_008603900.1| - 0.029 14.4 1.6 0.06 13.4 0.7 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase KR PF08659.5 gi|549455141|ref|YP_008603900.1| - 0.03 13.9 0.3 0.076 12.6 0.0 1.7 2 0 0 2 2 2 0 KR domain NAD_Gly3P_dh_N PF01210.18 gi|549455141|ref|YP_008603900.1| - 0.068 12.8 0.1 0.69 9.6 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SIMPL PF04402.9 gi|549455141|ref|YP_008603900.1| - 0.07 12.9 0.4 0.2 11.4 0.0 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF541) adh_short PF00106.20 gi|549455141|ref|YP_008603900.1| - 0.12 12.3 0.3 0.47 10.3 0.2 2.1 1 1 0 1 1 1 0 short chain dehydrogenase F420_oxidored PF03807.12 gi|549455141|ref|YP_008603900.1| - 0.12 12.7 1.1 1.5 9.3 0.1 2.6 1 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.16 gi|549455141|ref|YP_008603900.1| - 0.41 10.4 1.8 0.58 9.9 0.5 1.9 2 0 0 2 2 2 0 ThiF family V_ATPase_I PF01496.14 gi|549455142|ref|YP_008603901.1| - 8.6e-51 172.7 0.0 6.5e-28 97.0 0.0 2.4 2 1 0 2 2 2 2 V-type ATPase 116kDa subunit family Aminotran_1_2 PF00155.16 gi|549455143|ref|YP_008603902.1| - 1.5e-50 172.2 0.0 1.7e-50 172.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|549455143|ref|YP_008603902.1| - 4.9e-06 25.0 0.0 7e-06 24.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme tRNA_bind PF01588.15 gi|549455144|ref|YP_008603903.1| - 1.7e-30 104.7 0.0 1.9e-30 104.5 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Pantoate_transf PF02548.10 gi|549455145|ref|YP_008603904.1| - 9.9e-104 346.0 0.0 1.1e-103 345.8 0.0 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|549455145|ref|YP_008603904.1| - 9.9e-11 41.3 0.6 9.9e-11 41.3 0.4 1.6 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase Acetyltransf_10 PF13673.1 gi|549455145|ref|YP_008603904.1| - 0.049 13.7 0.0 0.093 12.8 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ApbA_C PF08546.6 gi|549455146|ref|YP_008603905.1| - 5.2e-23 81.4 0.0 7.4e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|549455146|ref|YP_008603905.1| - 9.1e-13 47.9 0.0 1.5e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 4HBT PF03061.17 gi|549455147|ref|YP_008603906.1| - 9.2e-06 25.6 0.1 1.3e-05 25.2 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|549455147|ref|YP_008603906.1| - 1.1e-05 25.8 0.3 1.3e-05 25.5 0.2 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF211 PF02680.9 gi|549455148|ref|YP_008603907.1| - 8.7e-36 121.6 1.7 9.4e-36 121.5 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Prok-JAB PF14464.1 gi|549455149|ref|YP_008603908.1| - 2.4e-15 56.0 0.0 2.8e-15 55.7 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|549455149|ref|YP_008603908.1| - 2.1e-07 30.6 0.0 2.8e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Metallophos_2 PF12850.2 gi|549455150|ref|YP_008603909.1| - 4.7e-27 94.7 0.0 5.4e-27 94.5 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|549455150|ref|YP_008603909.1| - 2.2e-06 27.1 0.6 0.00012 21.5 0.4 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|549455150|ref|YP_008603909.1| - 0.13 11.4 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DUF2283 PF10049.4 gi|549455151|ref|YP_008603910.1| - 4.3e-10 39.2 0.6 5.1e-10 39.0 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) HAD PF12710.2 gi|549455152|ref|YP_008603911.1| - 5.5e-15 56.0 0.0 8e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|549455152|ref|YP_008603911.1| - 5.4e-13 49.8 0.0 3.4e-10 40.7 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|549455152|ref|YP_008603911.1| - 4.5e-09 36.7 0.1 1.5e-08 35.0 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|549455152|ref|YP_008603911.1| - 0.00046 19.8 0.0 0.0012 18.4 0.0 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase tRNA_int_endo PF01974.12 gi|549455153|ref|YP_008603912.1| - 0.00037 20.2 0.0 0.00059 19.5 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain IF-2B PF01008.12 gi|549455154|ref|YP_008603913.1| - 6.4e-79 264.8 0.0 7.5e-79 264.6 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Iso_dh PF00180.15 gi|549455155|ref|YP_008603914.1| - 1.8e-96 323.1 0.0 2.2e-96 322.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase MannoseP_isomer PF01050.13 gi|549455155|ref|YP_008603914.1| - 0.099 12.2 0.0 0.27 10.8 0.0 1.7 1 1 0 1 1 1 0 Mannose-6-phosphate isomerase SelB-wing_2 PF09106.6 gi|549455156|ref|YP_008603915.1| - 0.061 13.2 1.6 18 5.3 0.0 3.5 3 1 0 3 3 3 0 Elongation factor SelB, winged helix ChW PF07538.6 gi|549455156|ref|YP_008603915.1| - 0.13 11.8 0.1 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 Clostridial hydrophobic W T2SE PF00437.15 gi|549455157|ref|YP_008603916.1| - 1.7e-39 135.3 0.0 2.6e-39 134.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|549455157|ref|YP_008603916.1| - 9.2e-05 22.7 0.0 0.00026 21.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|549455157|ref|YP_008603916.1| - 0.00027 21.7 0.0 0.00071 20.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|549455157|ref|YP_008603916.1| - 0.0011 19.2 0.0 0.0019 18.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|549455157|ref|YP_008603916.1| - 0.0025 17.2 0.0 0.005 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|549455157|ref|YP_008603916.1| - 0.0041 17.2 0.0 0.0072 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA12 PF10443.4 gi|549455157|ref|YP_008603916.1| - 0.0048 15.4 0.0 0.0072 14.8 0.0 1.1 1 0 0 1 1 1 1 RNA12 protein AAA_19 PF13245.1 gi|549455157|ref|YP_008603916.1| - 0.0063 16.2 0.0 0.018 14.7 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|549455157|ref|YP_008603916.1| - 0.0064 16.3 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|549455157|ref|YP_008603916.1| - 0.0072 16.3 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|549455157|ref|YP_008603916.1| - 0.0077 16.2 0.1 0.022 14.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|549455157|ref|YP_008603916.1| - 0.0082 16.4 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|549455157|ref|YP_008603916.1| - 0.0086 15.7 0.1 0.016 14.8 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA_30 PF13604.1 gi|549455157|ref|YP_008603916.1| - 0.0093 15.5 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|549455157|ref|YP_008603916.1| - 0.014 14.8 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|549455157|ref|YP_008603916.1| - 0.015 14.5 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI UPF0079 PF02367.12 gi|549455157|ref|YP_008603916.1| - 0.02 14.4 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|549455157|ref|YP_008603916.1| - 0.021 14.2 0.1 0.046 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|549455157|ref|YP_008603916.1| - 0.028 13.8 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.7 gi|549455157|ref|YP_008603916.1| - 0.039 13.0 0.0 0.066 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_21 PF13304.1 gi|549455157|ref|YP_008603916.1| - 0.052 13.5 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|549455157|ref|YP_008603916.1| - 0.061 13.5 0.0 0.096 12.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|549455157|ref|YP_008603916.1| - 0.063 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|549455157|ref|YP_008603916.1| - 0.073 12.4 0.1 0.18 11.2 0.1 1.6 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|549455157|ref|YP_008603916.1| - 0.081 12.8 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|549455157|ref|YP_008603916.1| - 0.15 12.5 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|549455157|ref|YP_008603916.1| - 0.2 11.3 0.0 0.39 10.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|549455157|ref|YP_008603916.1| - 0.26 10.7 0.0 0.38 10.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DS PF01916.12 gi|549455159|ref|YP_008603918.1| - 1.8e-66 224.3 0.0 2.1e-66 224.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase ParBc PF02195.13 gi|549455161|ref|YP_008603920.1| - 2.8e-10 40.1 0.0 4e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 ParB-like nuclease domain TP6A_N PF04406.9 gi|549455162|ref|YP_008603921.1| - 6.1e-24 83.4 0.5 1e-23 82.7 0.3 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|549455162|ref|YP_008603921.1| - 0.011 15.5 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) HAD_2 PF13419.1 gi|549455162|ref|YP_008603921.1| - 0.071 13.3 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Topo-VIb_trans PF09239.6 gi|549455163|ref|YP_008603922.1| - 5.3e-64 214.5 0.0 8.8e-64 213.8 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|549455163|ref|YP_008603922.1| - 3.7e-11 42.7 0.0 7.5e-11 41.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|549455163|ref|YP_008603922.1| - 9.4e-11 41.5 0.0 2e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|549455163|ref|YP_008603922.1| - 0.0012 17.5 0.0 0.0022 16.5 0.0 1.4 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) IMS_C PF11799.3 gi|549455163|ref|YP_008603922.1| - 0.016 15.1 0.0 1.9 8.4 0.0 2.7 3 0 0 3 3 3 0 impB/mucB/samB family C-terminal domain Ald_Xan_dh_C2 PF02738.13 gi|549455164|ref|YP_008603923.1| - 2.8e-39 134.8 0.0 3.4e-39 134.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|549455164|ref|YP_008603923.1| - 6.5e-32 109.9 0.0 1.8e-31 108.4 0.0 1.7 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF3130 PF11328.3 gi|549455164|ref|YP_008603923.1| - 0.05 13.6 0.0 0.097 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3130 Ald_Xan_dh_C2 PF02738.13 gi|549455165|ref|YP_008603924.1| - 9.3e-86 288.2 0.0 1.2e-85 287.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase HTH_8 PF02954.14 gi|549455165|ref|YP_008603924.1| - 0.14 11.7 0.7 2.1 7.9 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family EmrE PF13536.1 gi|549455166|ref|YP_008603925.1| - 0.0091 16.1 4.8 0.011 15.9 3.3 1.0 1 0 0 1 1 1 1 Multidrug resistance efflux transporter DUF2976 PF11190.3 gi|549455166|ref|YP_008603925.1| - 1.1 8.7 6.1 1.4 8.4 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) DUF4231 PF14015.1 gi|549455166|ref|YP_008603925.1| - 1.5 8.8 7.2 1.9 8.4 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF2975 PF11188.3 gi|549455166|ref|YP_008603925.1| - 2.2 8.0 9.9 2.7 7.7 6.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF3007 PF11460.3 gi|549455166|ref|YP_008603925.1| - 3.4 7.7 5.0 3.8 7.6 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) DUF1469 PF07332.6 gi|549455166|ref|YP_008603925.1| - 8.6 6.1 15.3 9.7 5.9 10.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1886 PF09171.5 gi|549455167|ref|YP_008603926.1| - 5.9e-67 225.2 0.0 7e-67 225.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) MR_MLE_C PF13378.1 gi|549455168|ref|YP_008603927.1| - 3.8e-13 49.3 0.0 7.3e-13 48.4 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|549455168|ref|YP_008603927.1| - 1.3e-11 44.4 0.0 2.2e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|549455168|ref|YP_008603927.1| - 9.4e-11 42.0 1.2 1.1e-10 41.9 0.0 1.7 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain TrkH PF02386.11 gi|549455169|ref|YP_008603928.1| - 6.8e-46 156.4 23.3 3e-44 151.0 11.3 2.2 2 0 0 2 2 2 2 Cation transport protein Form-deh_trans PF09163.6 gi|549455169|ref|YP_008603928.1| - 0.41 10.1 7.0 0.051 13.0 0.9 2.6 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane Acyl-CoA_dh_1 PF00441.19 gi|549455170|ref|YP_008603929.1| - 2.8e-32 111.9 7.0 4.6e-32 111.1 4.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|549455170|ref|YP_008603929.1| - 1.9e-12 46.5 0.7 3.7e-12 45.5 0.5 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|549455170|ref|YP_008603929.1| - 3e-11 43.6 5.1 6.2e-11 42.6 3.5 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Sod_Fe_C PF02777.13 gi|549455171|ref|YP_008603930.1| - 7.6e-40 135.0 0.1 1.2e-39 134.3 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|549455171|ref|YP_008603930.1| - 1.7e-29 101.8 2.0 1.7e-29 101.8 1.4 2.0 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain NMD3 PF04981.8 gi|549455174|ref|YP_008603933.1| - 1.9e-47 161.4 0.0 2.2e-47 161.1 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.2 gi|549455174|ref|YP_008603933.1| - 0.004 16.9 4.0 0.071 12.9 1.3 2.7 2 1 0 2 2 2 1 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|549455174|ref|YP_008603933.1| - 0.063 13.0 0.8 0.45 10.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbons zinc_ribbon_2 PF13240.1 gi|549455174|ref|YP_008603933.1| - 0.36 10.3 7.7 0.85 9.1 1.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|549455174|ref|YP_008603933.1| - 0.44 9.8 9.8 9.5 5.5 2.9 3.4 3 1 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|549455174|ref|YP_008603933.1| - 4.6 7.6 7.5 69 3.8 3.6 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-FPG_IleRS PF06827.9 gi|549455174|ref|YP_008603933.1| - 4.9 6.9 8.2 14 5.4 0.1 2.9 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|549455174|ref|YP_008603933.1| - 8.7 6.0 5.6 83 2.9 0.0 2.8 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family eIF-1a PF01176.14 gi|549455175|ref|YP_008603934.1| - 5.3e-22 77.0 0.3 8e-22 76.4 0.2 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|549455176|ref|YP_008603935.1| - 1e-61 207.6 0.0 1.3e-61 207.2 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|549455176|ref|YP_008603935.1| - 2.8e-08 33.1 0.0 1e-07 31.2 0.0 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|549455176|ref|YP_008603935.1| - 4e-06 26.7 0.3 0.0086 15.8 0.0 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|549455176|ref|YP_008603935.1| - 0.0044 16.2 0.0 0.0087 15.2 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain KH_1 PF00013.24 gi|549455177|ref|YP_008603936.1| - 2.7e-15 55.7 8.3 6.5e-08 32.0 0.4 2.4 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|549455177|ref|YP_008603936.1| - 4.3e-11 42.1 1.9 4.9e-05 22.8 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|549455177|ref|YP_008603936.1| - 0.0006 19.3 0.5 1.2 8.8 0.0 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|549455177|ref|YP_008603936.1| - 0.0038 16.7 5.3 0.54 9.8 0.2 2.7 2 0 0 2 2 2 2 KH domain IlvN PF07991.7 gi|549455177|ref|YP_008603936.1| - 0.056 12.8 0.0 0.45 9.8 0.0 2.0 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|549455178|ref|YP_008603937.1| - 1.4e-26 93.2 0.2 2.2e-26 92.6 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|549455178|ref|YP_008603937.1| - 4.2e-13 49.4 0.0 8.2e-13 48.4 0.0 1.5 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|549455178|ref|YP_008603937.1| - 7.1e-11 42.3 0.7 2.3e-10 40.7 0.3 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|549455178|ref|YP_008603937.1| - 7.2e-10 39.0 0.5 2.3e-09 37.4 0.3 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|549455178|ref|YP_008603937.1| - 1.1e-07 31.6 0.7 1.7e-07 31.0 0.5 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|549455178|ref|YP_008603937.1| - 4.6e-06 26.6 0.3 1.3e-05 25.1 0.2 1.8 1 1 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|549455178|ref|YP_008603937.1| - 1.1e-05 24.6 0.2 1.5e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|549455178|ref|YP_008603937.1| - 1.7e-05 24.3 0.2 3.1e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|549455178|ref|YP_008603937.1| - 1.8e-05 24.0 0.2 2.9e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|549455178|ref|YP_008603937.1| - 2.2e-05 24.2 0.1 5.1e-05 23.0 0.1 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.17 gi|549455178|ref|YP_008603937.1| - 0.00046 20.6 0.3 0.00094 19.6 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DAO PF01266.19 gi|549455178|ref|YP_008603937.1| - 0.00048 19.1 4.2 0.00089 18.2 1.8 1.9 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|549455178|ref|YP_008603937.1| - 0.00091 19.2 0.1 0.003 17.5 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain adh_short PF00106.20 gi|549455178|ref|YP_008603937.1| - 0.0012 18.7 3.8 0.0022 17.9 2.6 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_7 PF13241.1 gi|549455178|ref|YP_008603937.1| - 0.0014 18.8 0.3 0.0026 17.9 0.2 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|549455178|ref|YP_008603937.1| - 0.0018 18.2 2.6 0.0032 17.5 1.6 1.6 2 0 0 2 2 1 1 NADH(P)-binding Pyr_redox_2 PF07992.9 gi|549455178|ref|YP_008603937.1| - 0.0026 17.6 0.2 0.0063 16.4 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|549455178|ref|YP_008603937.1| - 0.0035 16.7 0.1 0.0063 15.8 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Abhydrolase_5 PF12695.2 gi|549455178|ref|YP_008603937.1| - 0.0042 16.8 0.4 0.017 14.9 0.3 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family FAD_binding_3 PF01494.14 gi|549455178|ref|YP_008603937.1| - 0.0065 15.5 0.4 0.011 14.8 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain CoA_binding_2 PF13380.1 gi|549455178|ref|YP_008603937.1| - 0.0069 16.5 0.3 0.015 15.4 0.2 1.6 1 0 0 1 1 1 1 CoA binding domain GIDA PF01134.17 gi|549455178|ref|YP_008603937.1| - 0.0097 14.8 0.6 0.015 14.2 0.4 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.9 gi|549455178|ref|YP_008603937.1| - 0.018 14.3 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KR PF08659.5 gi|549455178|ref|YP_008603937.1| - 0.021 14.4 1.3 0.037 13.6 0.9 1.4 1 0 0 1 1 1 0 KR domain ThiF PF00899.16 gi|549455178|ref|YP_008603937.1| - 0.028 14.2 1.0 0.081 12.7 0.6 1.8 2 0 0 2 2 2 0 ThiF family AlaDh_PNT_C PF01262.16 gi|549455178|ref|YP_008603937.1| - 0.068 12.7 1.2 0.29 10.6 0.4 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.12 gi|549455178|ref|YP_008603937.1| - 0.069 12.2 0.2 0.12 11.4 0.2 1.5 1 0 0 1 1 1 0 Thi4 family Myosin_head PF00063.16 gi|549455178|ref|YP_008603937.1| - 0.15 10.0 0.0 0.19 9.7 0.0 1.1 1 0 0 1 1 1 0 Myosin head (motor domain) Nitro_FeMo-Co PF02579.12 gi|549455178|ref|YP_008603937.1| - 0.15 12.1 0.4 0.52 10.4 0.1 2.0 2 1 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Rossmann-like PF10727.4 gi|549455178|ref|YP_008603937.1| - 0.16 11.6 0.8 0.35 10.5 0.6 1.5 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_8 PF13450.1 gi|549455179|ref|YP_008603938.1| - 0.004 17.1 0.2 0.017 15.1 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|549455179|ref|YP_008603938.1| - 0.0068 16.3 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|549455179|ref|YP_008603938.1| - 0.025 13.0 0.8 0.039 12.4 0.6 1.2 1 0 0 1 1 1 0 HI0933-like protein Lycopene_cycl PF05834.7 gi|549455179|ref|YP_008603938.1| - 0.12 11.2 0.7 0.49 9.2 0.0 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein GIDA PF01134.17 gi|549455179|ref|YP_008603938.1| - 0.15 10.8 0.5 0.23 10.2 0.4 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Epimerase PF01370.16 gi|549455180|ref|YP_008603939.1| - 1.6e-10 40.8 0.0 2.2e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|549455180|ref|YP_008603939.1| - 7.9e-07 28.2 0.0 1.3e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|549455180|ref|YP_008603939.1| - 2.5e-05 23.1 0.0 4.7e-05 22.2 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|549455180|ref|YP_008603939.1| - 0.00047 20.2 0.0 0.00076 19.5 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Hydrolase_3 PF08282.7 gi|549455181|ref|YP_008603940.1| - 2e-17 63.6 0.0 2.2e-12 47.1 0.0 2.9 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|549455181|ref|YP_008603940.1| - 2.7e-07 30.9 0.1 6.3e-06 26.4 0.1 2.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|549455181|ref|YP_008603940.1| - 4.9e-06 27.1 0.1 0.0048 17.3 0.0 2.4 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|549455181|ref|YP_008603940.1| - 0.009 15.3 0.0 0.021 14.1 0.0 1.6 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Spermine_synth PF01564.12 gi|549455182|ref|YP_008603941.1| - 2.1e-67 226.6 0.0 2.8e-67 226.2 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|549455182|ref|YP_008603941.1| - 6.5e-06 26.7 0.0 1.1e-05 25.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|549455182|ref|YP_008603941.1| - 1.2e-05 25.3 0.0 2.2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|549455182|ref|YP_008603941.1| - 0.0003 21.2 0.0 0.00088 19.7 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|549455182|ref|YP_008603941.1| - 0.0012 18.4 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|549455182|ref|YP_008603941.1| - 0.054 13.8 0.0 0.082 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain bact-PGI_C PF10432.4 gi|549455183|ref|YP_008603942.1| - 1.7e-31 109.0 0.0 2.3e-31 108.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|549455183|ref|YP_008603942.1| - 0.093 12.3 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 SIS domain DUF373 PF04123.8 gi|549455184|ref|YP_008603943.1| - 3.3e-88 296.0 11.9 4e-88 295.7 8.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3925 PF13063.1 gi|549455184|ref|YP_008603943.1| - 0.22 11.5 3.2 0.76 9.8 2.2 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3925) SRP19 PF01922.12 gi|549455185|ref|YP_008603944.1| - 7.9e-22 77.6 0.0 9.1e-22 77.4 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein UPF0181 PF03701.9 gi|549455185|ref|YP_008603944.1| - 0.06 12.6 0.0 0.095 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) Thioredoxin_3 PF13192.1 gi|549455188|ref|YP_008603947.1| - 1.3e-31 108.1 0.0 2.5e-17 62.4 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.19 gi|549455188|ref|YP_008603947.1| - 0.0028 17.6 6.9 0.52 10.3 0.4 4.4 3 2 0 3 3 3 2 Glutaredoxin Thioredoxin PF00085.15 gi|549455188|ref|YP_008603947.1| - 0.0033 17.0 0.0 0.31 10.7 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin DUF836 PF05768.9 gi|549455188|ref|YP_008603947.1| - 0.013 15.7 0.0 0.096 12.9 0.0 2.2 2 1 0 2 2 2 0 Glutaredoxin-like domain (DUF836) TrbC_Ftype PF09673.5 gi|549455188|ref|YP_008603947.1| - 0.017 14.6 0.0 3 7.4 0.0 2.5 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein Thioredoxin_4 PF13462.1 gi|549455188|ref|YP_008603947.1| - 0.018 15.0 0.1 0.25 11.3 0.0 2.6 3 0 0 3 3 3 0 Thioredoxin DUF2312 PF10073.4 gi|549455188|ref|YP_008603947.1| - 0.036 13.4 0.1 0.065 12.5 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2312) HTH_3 PF01381.17 gi|549455189|ref|YP_008603948.1| - 0.0056 16.5 0.0 0.014 15.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|549455189|ref|YP_008603948.1| - 0.007 16.3 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF384 PF04064.8 gi|549455189|ref|YP_008603948.1| - 0.063 12.8 0.1 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF384) Metallophos PF00149.23 gi|549455190|ref|YP_008603949.1| - 3.5e-21 75.5 0.2 4.8e-21 75.0 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|549455190|ref|YP_008603949.1| - 4.6e-08 33.0 0.0 6.1e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HTH_19 PF12844.2 gi|549455191|ref|YP_008603950.1| - 4.1e-10 39.5 0.5 1.6e-09 37.6 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|549455191|ref|YP_008603950.1| - 3.8e-08 33.0 2.7 1.4e-07 31.2 0.4 2.7 3 0 0 3 3 3 1 Helix-turn-helix HTH_31 PF13560.1 gi|549455191|ref|YP_008603950.1| - 0.00035 20.7 0.1 0.0013 18.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain NTPase_1 PF03266.10 gi|549455192|ref|YP_008603951.1| - 1.3e-48 164.8 0.0 1.7e-48 164.5 0.0 1.1 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.4 gi|549455192|ref|YP_008603951.1| - 2.5e-08 33.3 0.1 3.6e-07 29.6 0.1 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_17 PF13207.1 gi|549455192|ref|YP_008603951.1| - 1.5e-06 29.0 0.0 2.1e-06 28.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|549455192|ref|YP_008603951.1| - 7e-06 25.0 0.1 1.6e-05 23.8 0.1 1.5 1 1 0 1 1 1 1 ArgK protein AAA_19 PF13245.1 gi|549455192|ref|YP_008603951.1| - 1e-05 25.1 0.3 3.3e-05 23.5 0.2 2.0 1 1 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|549455192|ref|YP_008603951.1| - 1.1e-05 25.6 0.0 3.4e-05 24.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|549455192|ref|YP_008603951.1| - 1.1e-05 25.0 0.1 0.0006 19.3 0.0 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|549455192|ref|YP_008603951.1| - 1.8e-05 24.6 0.0 3.6e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|549455192|ref|YP_008603951.1| - 2.2e-05 24.5 0.1 4.2e-05 23.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|549455192|ref|YP_008603951.1| - 3e-05 23.7 0.2 0.0019 17.8 0.0 2.8 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|549455192|ref|YP_008603951.1| - 4.7e-05 23.7 0.0 7.2e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|549455192|ref|YP_008603951.1| - 0.00011 21.8 0.1 0.00059 19.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|549455192|ref|YP_008603951.1| - 0.00029 20.5 0.0 0.00079 19.1 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|549455192|ref|YP_008603951.1| - 0.0011 18.6 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_29 PF13555.1 gi|549455192|ref|YP_008603951.1| - 0.0013 18.2 0.0 0.0024 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|549455192|ref|YP_008603951.1| - 0.0015 18.5 0.1 0.0042 17.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|549455192|ref|YP_008603951.1| - 0.0015 18.6 0.0 0.0049 17.0 0.0 1.9 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|549455192|ref|YP_008603951.1| - 0.0019 17.4 0.0 0.0025 17.0 0.0 1.4 1 1 0 1 1 1 1 Chromatin associated protein KTI12 ATP_bind_1 PF03029.12 gi|549455192|ref|YP_008603951.1| - 0.004 16.7 0.0 0.006 16.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.12 gi|549455192|ref|YP_008603951.1| - 0.0075 15.7 0.0 0.45 9.8 0.0 2.4 3 0 0 3 3 2 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|549455192|ref|YP_008603951.1| - 0.0095 16.1 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 RNA helicase cobW PF02492.14 gi|549455192|ref|YP_008603951.1| - 0.011 15.2 0.0 0.051 13.0 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PPV_E1_C PF00519.12 gi|549455192|ref|YP_008603951.1| - 0.012 14.1 0.0 0.019 13.6 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase KaiC PF06745.8 gi|549455192|ref|YP_008603951.1| - 0.016 14.3 0.0 0.056 12.5 0.0 1.8 2 0 0 2 2 2 0 KaiC Herpes_Helicase PF02689.9 gi|549455192|ref|YP_008603951.1| - 0.02 12.7 0.0 2 6.0 0.0 2.0 2 0 0 2 2 2 0 Helicase AAA_11 PF13086.1 gi|549455192|ref|YP_008603951.1| - 0.021 14.4 0.0 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|549455192|ref|YP_008603951.1| - 0.023 14.1 0.2 0.05 13.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|549455192|ref|YP_008603951.1| - 0.035 14.3 0.0 0.071 13.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|549455192|ref|YP_008603951.1| - 0.047 13.5 0.0 0.092 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|549455192|ref|YP_008603951.1| - 0.06 13.0 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Zeta_toxin PF06414.7 gi|549455192|ref|YP_008603951.1| - 0.061 12.4 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin T2SE PF00437.15 gi|549455192|ref|YP_008603951.1| - 0.062 12.1 0.0 0.12 11.2 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|549455192|ref|YP_008603951.1| - 0.066 12.3 0.0 0.15 11.2 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Glyco_trans_1_4 PF13692.1 gi|549455192|ref|YP_008603951.1| - 0.071 13.2 0.3 0.2 11.7 0.2 1.7 1 1 0 2 2 2 0 Glycosyl transferases group 1 Rad17 PF03215.10 gi|549455192|ref|YP_008603951.1| - 0.089 11.4 0.0 0.094 11.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Viral_helicase1 PF01443.13 gi|549455192|ref|YP_008603951.1| - 0.099 12.1 0.0 0.34 10.4 0.0 1.8 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.1 gi|549455192|ref|YP_008603951.1| - 0.11 12.0 0.0 2.3 7.7 0.0 2.5 3 0 0 3 3 3 0 AAA domain Thymidylate_kin PF02223.12 gi|549455192|ref|YP_008603951.1| - 0.12 11.6 0.0 0.16 11.3 0.0 1.4 1 1 0 1 1 1 0 Thymidylate kinase MMR_HSR1 PF01926.18 gi|549455192|ref|YP_008603951.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Helicase_RecD PF05127.9 gi|549455192|ref|YP_008603951.1| - 0.16 11.5 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 Helicase TRM PF02005.11 gi|549455193|ref|YP_008603952.1| - 2e-83 280.4 0.0 2.5e-83 280.0 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DUF2067 PF09840.4 gi|549455193|ref|YP_008603952.1| - 0.0006 19.3 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) Methyltransf_26 PF13659.1 gi|549455193|ref|YP_008603952.1| - 0.0033 17.4 0.1 0.0085 16.1 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|549455193|ref|YP_008603952.1| - 0.0064 15.8 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain RNA_pol_Rpc34 PF05158.7 gi|549455194|ref|YP_008603953.1| - 3.3e-06 26.5 0.3 0.00096 18.4 0.1 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit MarR PF01047.17 gi|549455194|ref|YP_008603953.1| - 7.8e-06 25.5 0.5 1.3e-05 24.8 0.4 1.3 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|549455194|ref|YP_008603953.1| - 0.00041 20.1 0.0 0.00053 19.7 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|549455194|ref|YP_008603953.1| - 0.018 14.6 0.4 0.026 14.1 0.3 1.2 1 0 0 1 1 1 0 MarR family GPP34 PF05719.6 gi|549455194|ref|YP_008603953.1| - 0.069 13.2 0.1 0.089 12.8 0.1 1.0 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) HTH_27 PF13463.1 gi|549455194|ref|YP_008603953.1| - 0.085 13.1 0.1 0.14 12.5 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|549455194|ref|YP_008603953.1| - 0.15 11.7 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CBS PF00571.23 gi|549455195|ref|YP_008603954.1| - 1.2e-66 220.1 32.1 1.8e-13 50.0 0.9 7.8 8 1 0 8 8 8 7 CBS domain Ribosomal_L9_C PF03948.9 gi|549455195|ref|YP_008603954.1| - 0.0039 17.2 0.1 5.3 7.1 0.0 3.9 4 0 0 4 4 4 1 Ribosomal protein L9, C-terminal domain DUF3659 PF12396.3 gi|549455195|ref|YP_008603954.1| - 0.53 9.9 5.1 53 3.5 0.1 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3659) Cache_3 PF14827.1 gi|549455195|ref|YP_008603954.1| - 7.5 6.4 8.3 32 4.4 0.1 4.8 6 0 0 6 6 6 0 Sensory domain of two-component sensor kinase Gar1 PF04410.9 gi|549455196|ref|YP_008603955.1| - 0.00011 21.6 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.14 gi|549455197|ref|YP_008603956.1| - 4.6e-12 45.5 2.3 4.3e-09 36.0 0.1 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Cyclin_C PF02984.14 gi|549455197|ref|YP_008603956.1| - 0.0012 18.7 0.0 0.0035 17.2 0.0 1.7 1 0 0 1 1 1 1 Cyclin, C-terminal domain Baculo_p48 PF04878.8 gi|549455197|ref|YP_008603956.1| - 0.011 14.6 0.1 0.016 14.1 0.1 1.1 1 0 0 1 1 1 0 Baculovirus P48 protein Sigma70_r4_2 PF08281.7 gi|549455197|ref|YP_008603956.1| - 0.055 12.9 0.1 0.32 10.4 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 GHMP_kinases_N PF00288.21 gi|549455197|ref|YP_008603956.1| - 0.11 12.5 0.2 1 9.5 0.1 2.5 3 0 0 3 3 3 0 GHMP kinases N terminal domain TrmB PF01978.14 gi|549455197|ref|YP_008603956.1| - 0.55 9.9 2.8 2.6 7.8 0.1 2.9 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB NTPase_I-T PF01931.13 gi|549455198|ref|YP_008603957.1| - 4.9e-31 107.7 0.3 6.6e-31 107.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF84 HTH_41 PF14502.1 gi|549455198|ref|YP_008603957.1| - 0.025 14.1 0.2 1.7 8.2 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain Ribosomal_S8e PF01201.17 gi|549455199|ref|YP_008603958.1| - 9.3e-38 129.3 1.4 1e-37 129.1 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e IncA PF04156.9 gi|549455200|ref|YP_008603959.1| - 7.6e-06 25.6 59.1 0.00049 19.7 9.5 3.3 1 1 2 3 3 3 2 IncA protein Reo_sigmaC PF04582.7 gi|549455200|ref|YP_008603959.1| - 2.7e-05 23.5 2.5 0.00014 21.1 0.9 2.2 1 1 0 2 2 2 1 Reovirus sigma C capsid protein GAS PF13851.1 gi|549455200|ref|YP_008603959.1| - 6.2e-05 22.2 17.1 6.2e-05 22.2 11.9 3.1 1 1 0 2 2 2 1 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.7 gi|549455200|ref|YP_008603959.1| - 0.00015 21.5 45.3 0.00047 19.9 3.9 3.4 1 1 2 3 3 3 2 TPR/MLP1/MLP2-like protein DUF4201 PF13870.1 gi|549455200|ref|YP_008603959.1| - 0.00042 19.8 56.7 0.0025 17.2 4.7 3.8 1 1 2 3 3 2 2 Domain of unknown function (DUF4201) AAA_13 PF13166.1 gi|549455200|ref|YP_008603959.1| - 0.00073 18.1 13.7 0.00073 18.1 9.5 2.2 1 1 1 2 2 2 1 AAA domain Seryl_tRNA_N PF02403.17 gi|549455200|ref|YP_008603959.1| - 0.00093 19.1 53.6 0.084 12.9 9.6 5.2 1 1 3 4 4 4 2 Seryl-tRNA synthetase N-terminal domain TMF_DNA_bd PF12329.3 gi|549455200|ref|YP_008603959.1| - 0.0014 18.3 4.0 0.0014 18.3 2.8 6.1 1 1 4 6 6 4 2 TATA element modulatory factor 1 DNA binding FliJ PF02050.11 gi|549455200|ref|YP_008603959.1| - 0.0015 18.5 44.1 0.0046 17.0 6.5 3.5 2 2 1 3 3 3 1 Flagellar FliJ protein ATG16 PF08614.6 gi|549455200|ref|YP_008603959.1| - 0.0019 18.0 13.0 0.0019 18.0 9.0 3.6 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) MCPsignal PF00015.16 gi|549455200|ref|YP_008603959.1| - 0.0023 17.5 10.0 0.0083 15.6 2.5 2.3 2 0 0 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Mod_r PF07200.8 gi|549455200|ref|YP_008603959.1| - 0.0025 17.7 9.0 0.0025 17.7 6.2 3.9 1 1 3 4 4 4 1 Modifier of rudimentary (Mod(r)) protein TBPIP PF07106.8 gi|549455200|ref|YP_008603959.1| - 0.0027 17.2 7.5 0.0027 17.2 5.2 4.1 1 1 3 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF948 PF06103.6 gi|549455200|ref|YP_008603959.1| - 0.0035 17.1 0.5 0.0035 17.1 0.3 3.9 1 1 3 4 4 4 1 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.7 gi|549455200|ref|YP_008603959.1| - 0.0049 16.7 8.0 0.011 15.5 0.6 3.2 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.6 gi|549455200|ref|YP_008603959.1| - 0.006 15.2 47.6 0.017 13.8 13.6 2.9 1 1 1 2 2 2 1 Spc7 kinetochore protein APG6 PF04111.7 gi|549455200|ref|YP_008603959.1| - 0.0071 15.4 47.5 0.13 11.2 11.1 3.1 1 1 1 3 3 3 2 Autophagy protein Apg6 DUF972 PF06156.8 gi|549455200|ref|YP_008603959.1| - 0.0076 16.5 44.4 0.12 12.7 5.6 4.8 1 1 3 4 4 4 2 Protein of unknown function (DUF972) Bacillus_HBL PF05791.6 gi|549455200|ref|YP_008603959.1| - 0.0085 15.4 26.0 0.029 13.7 1.7 4.1 1 1 3 4 4 4 2 Bacillus haemolytic enterotoxin (HBL) Laminin_II PF06009.7 gi|549455200|ref|YP_008603959.1| - 0.011 15.4 3.9 0.011 15.4 2.7 3.7 1 1 3 4 4 4 0 Laminin Domain II MscS_porin PF12795.2 gi|549455200|ref|YP_008603959.1| - 0.013 14.8 34.0 0.016 14.5 6.3 3.1 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain LPP PF04728.8 gi|549455200|ref|YP_008603959.1| - 0.017 14.8 0.2 2.2 8.1 0.1 3.4 2 1 3 5 5 5 0 Lipoprotein leucine-zipper DUF904 PF06005.7 gi|549455200|ref|YP_008603959.1| - 0.026 14.7 11.1 0.026 14.7 7.7 5.5 2 2 2 4 4 3 0 Protein of unknown function (DUF904) Cep57_CLD_2 PF14197.1 gi|549455200|ref|YP_008603959.1| - 0.027 14.3 2.7 0.027 14.3 1.9 5.3 2 1 4 6 6 4 0 Centrosome localisation domain of PPC89 DUF3584 PF12128.3 gi|549455200|ref|YP_008603959.1| - 0.027 11.8 40.9 0.039 11.2 28.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) SseC PF04888.7 gi|549455200|ref|YP_008603959.1| - 0.035 13.4 0.3 0.035 13.4 0.2 3.0 2 2 1 3 3 3 0 Secretion system effector C (SseC) like family Snapin_Pallidin PF14712.1 gi|549455200|ref|YP_008603959.1| - 0.046 14.0 40.3 0.082 13.2 2.1 4.2 3 1 1 4 4 4 0 Snapin/Pallidin SlyX PF04102.7 gi|549455200|ref|YP_008603959.1| - 0.046 14.1 0.2 0.046 14.1 0.2 5.4 2 2 3 5 5 4 0 SlyX SNARE PF05739.14 gi|549455200|ref|YP_008603959.1| - 0.054 13.1 0.2 0.054 13.1 0.1 4.1 4 1 1 5 5 3 0 SNARE domain FUSC PF04632.7 gi|549455200|ref|YP_008603959.1| - 0.078 11.4 11.7 0.47 8.8 1.3 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family AAA_27 PF13514.1 gi|549455200|ref|YP_008603959.1| - 0.079 10.6 41.9 0.75 7.4 0.7 2.1 1 1 1 2 2 2 0 AAA domain DUF3450 PF11932.3 gi|549455200|ref|YP_008603959.1| - 0.11 11.7 27.0 0.074 12.3 4.2 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) Mnd1 PF03962.10 gi|549455200|ref|YP_008603959.1| - 0.13 11.8 45.1 0.28 10.8 11.4 3.8 1 1 3 4 4 4 0 Mnd1 family WXG100 PF06013.7 gi|549455200|ref|YP_008603959.1| - 0.28 11.2 2.0 14 5.7 0.1 3.7 2 2 1 3 3 3 0 Proteins of 100 residues with WXG NPV_P10 PF05531.7 gi|549455200|ref|YP_008603959.1| - 0.3 11.3 9.8 3 8.1 2.3 3.7 3 1 0 3 3 2 0 Nucleopolyhedrovirus P10 protein DUF342 PF03961.8 gi|549455200|ref|YP_008603959.1| - 0.42 8.9 46.3 0.24 9.7 11.4 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF342) Gp58 PF07902.6 gi|549455200|ref|YP_008603959.1| - 0.45 8.6 6.8 0.59 8.2 4.7 1.1 1 0 0 1 1 1 0 gp58-like protein CENP-F_leu_zip PF10473.4 gi|549455200|ref|YP_008603959.1| - 0.57 10.0 61.3 0.049 13.4 12.5 3.4 1 1 3 4 4 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3573 PF12097.3 gi|549455200|ref|YP_008603959.1| - 0.62 8.6 9.9 0.057 12.0 1.4 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF3573) DUF2935 PF11155.3 gi|549455200|ref|YP_008603959.1| - 0.63 10.1 17.6 2.2 8.3 3.7 3.3 1 1 0 2 2 2 0 Domain of unknown function (DUF2935) GLE1 PF07817.8 gi|549455200|ref|YP_008603959.1| - 0.82 8.5 10.0 1.6 7.5 1.0 2.4 2 1 0 2 2 2 0 GLE1-like protein Herpes_U30 PF04523.8 gi|549455200|ref|YP_008603959.1| - 0.95 6.8 16.4 0.01 13.3 1.6 2.6 1 1 0 2 2 2 0 Herpes virus tegument protein U30 Lectin_N PF03954.9 gi|549455200|ref|YP_008603959.1| - 0.96 8.8 6.9 0.23 10.8 0.5 2.9 2 2 1 3 3 3 0 Hepatic lectin, N-terminal domain MAD PF05557.8 gi|549455200|ref|YP_008603959.1| - 1.2 7.1 55.1 1.5 6.7 6.1 2.4 1 1 1 2 2 2 0 Mitotic checkpoint protein HSBP1 PF06825.7 gi|549455200|ref|YP_008603959.1| - 1.3 8.6 11.2 0.16 11.5 1.3 3.6 2 1 1 3 3 3 0 Heat shock factor binding protein 1 Laminin_I PF06008.9 gi|549455200|ref|YP_008603959.1| - 1.5 8.0 33.1 0.06 12.6 2.5 3.1 1 1 1 2 2 1 0 Laminin Domain I Fib_alpha PF08702.5 gi|549455200|ref|YP_008603959.1| - 1.5 8.9 29.0 0.24 11.5 6.8 3.1 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family HsbA PF12296.3 gi|549455200|ref|YP_008603959.1| - 1.5 8.6 4.3 42 4.0 0.1 3.5 3 1 1 4 4 3 0 Hydrophobic surface binding protein A RmuC PF02646.11 gi|549455200|ref|YP_008603959.1| - 1.5 7.5 28.9 0.045 12.5 2.2 3.6 2 1 2 4 4 4 0 RmuC family DivIC PF04977.10 gi|549455200|ref|YP_008603959.1| - 1.5 8.3 50.2 0.19 11.2 0.9 6.4 3 2 4 7 7 6 0 Septum formation initiator XPG_I_2 PF12813.2 gi|549455200|ref|YP_008603959.1| - 1.6 8.1 9.1 0.2 11.1 2.9 1.9 1 1 1 2 2 2 0 XPG domain containing Spectrin PF00435.16 gi|549455200|ref|YP_008603959.1| - 1.7 8.9 34.5 1.8 8.9 8.4 3.9 2 1 2 4 4 4 0 Spectrin repeat HOOK PF05622.7 gi|549455200|ref|YP_008603959.1| - 1.7 6.3 48.8 0.016 13.0 8.7 2.9 1 1 1 2 2 1 0 HOOK protein TMF_TATA_bd PF12325.3 gi|549455200|ref|YP_008603959.1| - 1.8 8.3 57.0 0.11 12.1 1.6 4.9 1 1 4 5 5 5 0 TATA element modulatory factor 1 TATA binding ADIP PF11559.3 gi|549455200|ref|YP_008603959.1| - 3.1 7.6 41.3 0.13 12.1 5.3 3.5 1 1 4 5 5 4 0 Afadin- and alpha -actinin-Binding DUF4618 PF15397.1 gi|549455200|ref|YP_008603959.1| - 3.2 7.0 44.9 0.096 12.0 3.7 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) Syntaxin PF00804.20 gi|549455200|ref|YP_008603959.1| - 3.7 7.7 37.1 0.27 11.4 3.7 4.0 1 1 2 3 3 3 0 Syntaxin ERM PF00769.14 gi|549455200|ref|YP_008603959.1| - 4.1 6.8 57.3 16 4.8 17.0 3.3 1 1 2 3 3 2 0 Ezrin/radixin/moesin family Orthopox_A5L PF06193.6 gi|549455200|ref|YP_008603959.1| - 4.8 7.1 21.8 0.13 12.2 0.6 3.7 2 2 1 3 3 3 0 Orthopoxvirus A5L protein-like FliD_C PF07195.7 gi|549455200|ref|YP_008603959.1| - 5.5 6.2 13.2 1 8.5 3.5 3.1 2 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Atg14 PF10186.4 gi|549455200|ref|YP_008603959.1| - 5.6 5.8 50.4 3.6 6.4 15.0 3.1 1 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 MbeD_MobD PF04899.7 gi|549455200|ref|YP_008603959.1| - 5.7 6.9 12.9 0.71 9.8 0.4 4.3 1 1 3 4 4 4 0 MbeD/MobD like CCDC155 PF14662.1 gi|549455200|ref|YP_008603959.1| - 5.7 6.4 54.8 1.9 8.0 17.6 2.6 1 1 0 2 2 2 0 Coiled-coil region of CCDC155 SBDS_C PF09377.5 gi|549455200|ref|YP_008603959.1| - 9.1 6.0 11.6 1.1 8.9 4.9 2.1 2 1 0 2 2 1 0 SBDS protein C-terminal domain ATP_bind_1 PF03029.12 gi|549455201|ref|YP_008603960.1| - 2.6e-58 197.3 0.0 3e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|549455201|ref|YP_008603960.1| - 6.6e-06 25.6 1.8 9.8e-06 25.0 1.3 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|549455201|ref|YP_008603960.1| - 3e-05 22.9 0.2 5.8e-05 22.0 0.1 1.4 1 0 0 1 1 1 1 ArgK protein AAA_16 PF13191.1 gi|549455201|ref|YP_008603960.1| - 3.4e-05 23.9 0.0 6.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|549455201|ref|YP_008603960.1| - 4e-05 24.4 0.1 9.7e-05 23.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|549455201|ref|YP_008603960.1| - 0.00061 20.1 0.3 0.0014 18.8 0.1 1.9 2 1 0 2 2 1 1 AAA domain NTPase_1 PF03266.10 gi|549455201|ref|YP_008603960.1| - 0.0016 18.1 0.2 0.046 13.4 0.1 2.2 2 0 0 2 2 2 1 NTPase MMR_HSR1 PF01926.18 gi|549455201|ref|YP_008603960.1| - 0.0022 17.9 0.0 0.0054 16.6 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase APS_kinase PF01583.15 gi|549455201|ref|YP_008603960.1| - 0.0028 17.3 0.0 0.0051 16.4 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Herpes_Helicase PF02689.9 gi|549455201|ref|YP_008603960.1| - 0.011 13.5 0.3 0.015 13.0 0.2 1.1 1 0 0 1 1 1 0 Helicase AAA_30 PF13604.1 gi|549455201|ref|YP_008603960.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|549455201|ref|YP_008603960.1| - 0.023 13.7 0.7 0.043 12.8 0.5 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase Dynamin_N PF00350.18 gi|549455201|ref|YP_008603960.1| - 0.033 14.0 1.4 1.6 8.5 0.5 2.2 2 0 0 2 2 2 0 Dynamin family AAA_28 PF13521.1 gi|549455201|ref|YP_008603960.1| - 0.033 14.1 0.2 0.073 13.0 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|549455201|ref|YP_008603960.1| - 0.037 13.5 1.1 0.075 12.5 0.8 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|549455201|ref|YP_008603960.1| - 0.038 13.1 0.0 0.19 10.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 FeoB_N PF02421.13 gi|549455201|ref|YP_008603960.1| - 0.063 12.5 0.3 0.75 9.0 0.0 2.1 2 0 0 2 2 2 0 Ferrous iron transport protein B Zeta_toxin PF06414.7 gi|549455201|ref|YP_008603960.1| - 0.074 12.1 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF87 PF01935.12 gi|549455201|ref|YP_008603960.1| - 0.079 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 MipZ PF09140.6 gi|549455201|ref|YP_008603960.1| - 0.11 11.5 0.2 0.65 9.0 0.1 1.9 1 1 0 1 1 1 0 ATPase MipZ AAA_10 PF12846.2 gi|549455201|ref|YP_008603960.1| - 0.12 11.7 0.1 0.14 11.5 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain DUF815 PF05673.8 gi|549455201|ref|YP_008603960.1| - 0.12 11.2 0.1 0.18 10.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MobB PF03205.9 gi|549455201|ref|YP_008603960.1| - 0.13 11.9 0.1 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|549455201|ref|YP_008603960.1| - 0.18 11.2 0.4 3 7.2 0.1 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain COX2 PF00116.15 gi|549455202|ref|YP_008603961.1| - 1.8e-19 69.7 0.3 4.7e-18 65.1 0.2 2.1 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX1 PF00115.15 gi|549455203|ref|YP_008603962.1| - 8.7e-148 492.6 58.1 8.7e-148 492.6 40.3 3.1 2 2 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|549455203|ref|YP_008603962.1| - 5.8e-22 78.3 17.0 5.8e-22 78.3 11.8 2.8 2 0 0 2 2 2 1 Cytochrome c oxidase subunit III Rif1_N PF12231.3 gi|549455203|ref|YP_008603962.1| - 0.12 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Rap1-interacting factor 1 N terminal COX4_pro PF03626.9 gi|549455204|ref|YP_008603963.1| - 7.8e-13 48.3 6.1 1.2e-12 47.7 4.3 1.3 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV PRA1 PF03208.14 gi|549455204|ref|YP_008603963.1| - 0.076 12.3 4.6 0.081 12.2 2.9 1.3 1 1 0 1 1 1 0 PRA1 family protein DUF3487 PF11990.3 gi|549455204|ref|YP_008603963.1| - 0.36 10.2 3.8 0.15 11.4 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF4233 PF14017.1 gi|549455204|ref|YP_008603963.1| - 1.2 9.0 8.1 0.28 11.1 1.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4233) DUF4229 PF14012.1 gi|549455204|ref|YP_008603963.1| - 3.4 7.6 9.8 0.42 10.5 2.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) SCO1-SenC PF02630.9 gi|549455205|ref|YP_008603964.1| - 9.4e-08 31.8 0.0 2.6e-07 30.4 0.0 1.6 1 1 0 1 1 1 1 SCO1/SenC Methyltrn_RNA_2 PF04013.7 gi|549455206|ref|YP_008603965.1| - 9.1e-42 142.8 0.0 1.1e-41 142.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase PEMT PF04191.8 gi|549455207|ref|YP_008603966.1| - 7.8e-07 29.1 0.0 7.8e-07 29.1 0.0 2.0 3 0 0 3 3 3 1 Phospholipid methyltransferase ICMT PF04140.9 gi|549455207|ref|YP_008603966.1| - 5.2e-05 23.3 0.1 5.2e-05 23.3 0.0 1.9 3 0 0 3 3 3 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DAO PF01266.19 gi|549455208|ref|YP_008603967.1| - 1.8e-27 96.2 4.3 3.4e-26 92.0 3.0 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|549455208|ref|YP_008603967.1| - 0.00013 22.2 0.3 0.00053 20.3 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|549455208|ref|YP_008603967.1| - 0.00014 20.4 0.1 0.00023 19.7 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|549455208|ref|YP_008603967.1| - 0.00016 21.5 0.9 0.00038 20.4 0.3 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|549455208|ref|YP_008603967.1| - 0.00066 18.6 0.2 0.00096 18.1 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|549455208|ref|YP_008603967.1| - 0.001 19.0 0.1 0.0039 17.0 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|549455208|ref|YP_008603967.1| - 0.0011 17.9 0.1 0.031 13.1 0.2 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|549455208|ref|YP_008603967.1| - 0.004 16.3 0.3 0.033 13.2 0.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|549455208|ref|YP_008603967.1| - 0.0064 15.5 0.1 0.0085 15.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|549455208|ref|YP_008603967.1| - 0.048 13.2 0.1 0.076 12.5 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain SurE PF01975.12 gi|549455209|ref|YP_008603968.1| - 1.4e-34 119.1 0.0 1.8e-34 118.7 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Glyco_trans_4_4 PF13579.1 gi|549455209|ref|YP_008603968.1| - 0.013 15.6 0.0 0.043 13.9 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Phage_integrase PF00589.17 gi|549455211|ref|YP_008603970.1| - 3.2e-36 124.6 0.0 4.5e-36 124.1 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|549455211|ref|YP_008603970.1| - 1.1e-06 28.7 2.2 2.8e-06 27.3 0.2 2.2 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|549455211|ref|YP_008603970.1| - 9.5e-06 25.8 0.1 0.042 14.1 0.0 2.5 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|549455211|ref|YP_008603970.1| - 0.1 12.3 0.3 0.35 10.6 0.2 1.8 1 1 0 1 1 1 0 Integrase Aldedh PF00171.17 gi|549455212|ref|YP_008603971.1| - 8.8e-98 327.6 0.0 1e-97 327.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Adeno_E1B_55K PF01696.12 gi|549455212|ref|YP_008603971.1| - 0.2 10.0 0.0 0.3 9.5 0.0 1.1 1 0 0 1 1 1 0 Adenovirus EB1 55K protein / large t-antigen tRNA-synt_2b PF00587.20 gi|549455213|ref|YP_008603972.1| - 2.2e-34 118.5 0.0 3.3e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|549455213|ref|YP_008603972.1| - 1.6e-06 27.9 0.1 3.3e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain DUF2419 PF10343.4 gi|549455214|ref|YP_008603973.1| - 0.00046 19.5 0.0 0.0018 17.5 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2419) DUF1886 PF09171.5 gi|549455214|ref|YP_008603973.1| - 0.00049 19.2 0.0 0.001 18.1 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1886) CARDB PF07705.6 gi|549455215|ref|YP_008603974.1| - 0.0078 16.2 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 CARDB Met_10 PF02475.11 gi|549455217|ref|YP_008603976.1| - 3.3e-49 167.1 0.0 4.4e-49 166.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|549455217|ref|YP_008603976.1| - 1e-05 25.5 0.0 1.9e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|549455217|ref|YP_008603976.1| - 3.2e-05 23.2 0.0 4.3e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.11 gi|549455217|ref|YP_008603976.1| - 0.00033 19.7 0.0 0.0004 19.4 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|549455217|ref|YP_008603976.1| - 0.00039 20.0 0.0 0.00073 19.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|549455217|ref|YP_008603976.1| - 0.00065 20.2 0.0 0.0014 19.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|549455217|ref|YP_008603976.1| - 0.0011 18.3 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_16 PF10294.4 gi|549455217|ref|YP_008603976.1| - 0.016 14.6 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_31 PF13847.1 gi|549455217|ref|YP_008603976.1| - 0.081 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TYW3 PF02676.9 gi|549455218|ref|YP_008603977.1| - 5.9e-35 120.2 0.0 7e-35 120.0 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 DEAD PF00270.24 gi|549455219|ref|YP_008603978.1| - 1.3e-16 60.6 0.0 3.1e-16 59.3 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|549455219|ref|YP_008603978.1| - 4.8e-16 59.1 0.0 6e-14 52.2 0.0 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|549455219|ref|YP_008603978.1| - 6.9e-13 48.2 0.0 3.3e-11 42.8 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain AAA_11 PF13086.1 gi|549455219|ref|YP_008603978.1| - 0.0058 16.2 0.1 0.7 9.4 0.0 2.7 2 1 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|549455219|ref|YP_008603978.1| - 0.019 15.0 0.0 0.42 10.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|549455219|ref|YP_008603978.1| - 0.041 13.3 0.0 6 6.2 0.0 2.9 3 1 0 4 4 4 0 AAA-like domain PhoH PF02562.11 gi|549455219|ref|YP_008603978.1| - 0.091 11.9 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AP_endonuc_2 PF01261.19 gi|549455220|ref|YP_008603979.1| - 2.9e-09 36.5 0.1 4.3e-09 35.9 0.1 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Hydrolase_3 PF08282.7 gi|549455221|ref|YP_008603980.1| - 0.00064 19.3 0.0 0.03 13.8 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|549455221|ref|YP_008603980.1| - 0.0076 15.5 0.0 1.6 7.9 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Osmo_MPGsynth PF09488.5 gi|549455222|ref|YP_008603981.1| - 3.7e-135 450.4 0.0 4.2e-135 450.2 0.0 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) LMWPc PF01451.16 gi|549455223|ref|YP_008603982.1| - 0.042 14.1 0.4 0.073 13.3 0.3 1.3 1 0 0 1 1 1 0 Low molecular weight phosphotyrosine protein phosphatase DUF3368 PF11848.3 gi|549455225|ref|YP_008603984.1| - 4e-14 51.8 0.7 7.4e-14 51.0 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) UPF0175 PF03683.8 gi|549455226|ref|YP_008603985.1| - 3.6e-20 71.2 0.1 3.8e-20 71.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) CopD PF05425.8 gi|549455227|ref|YP_008603986.1| - 3.8e-19 68.8 7.2 3.8e-19 68.8 5.0 1.5 2 0 0 2 2 2 1 Copper resistance protein D UPF0093 PF03653.8 gi|549455227|ref|YP_008603986.1| - 0.0008 19.3 5.9 0.0028 17.6 4.1 1.8 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0093) DUF2269 PF10027.4 gi|549455227|ref|YP_008603986.1| - 0.0016 18.2 7.2 0.0029 17.3 5.0 1.4 1 1 0 1 1 1 1 Predicted integral membrane protein (DUF2269) DUF2214 PF09980.4 gi|549455227|ref|YP_008603986.1| - 0.002 17.8 4.9 0.0088 15.7 3.4 2.0 1 1 0 1 1 1 1 Predicted membrane protein (DUF2214) DUF4149 PF13664.1 gi|549455227|ref|YP_008603986.1| - 0.0023 17.9 2.6 0.0023 17.9 1.8 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4149) DUF989 PF06181.6 gi|549455227|ref|YP_008603986.1| - 0.01 14.9 0.3 0.01 14.9 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF989) 7tm_7 PF08395.7 gi|549455227|ref|YP_008603986.1| - 0.014 14.4 0.1 0.024 13.6 0.0 1.4 1 1 0 1 1 1 0 7tm Chemosensory receptor DUF1772 PF08592.6 gi|549455227|ref|YP_008603986.1| - 0.03 14.0 1.1 0.04 13.6 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) ABC_tran PF00005.22 gi|549455228|ref|YP_008603987.1| - 2.1e-37 128.4 0.0 2.7e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455228|ref|YP_008603987.1| - 1.4e-18 67.9 0.0 3.5e-14 53.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|549455228|ref|YP_008603987.1| - 3.4e-09 36.2 0.1 3.5e-06 26.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|549455228|ref|YP_008603987.1| - 3.4e-05 23.4 0.3 0.024 14.0 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|549455228|ref|YP_008603987.1| - 0.00069 19.0 0.4 0.0013 18.2 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|549455228|ref|YP_008603987.1| - 0.00069 18.7 0.0 0.0028 16.7 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|549455228|ref|YP_008603987.1| - 0.0014 18.6 0.9 0.0027 17.7 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|549455228|ref|YP_008603987.1| - 0.0016 17.8 0.6 0.013 14.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|549455228|ref|YP_008603987.1| - 0.0057 17.4 0.2 0.012 16.3 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|549455228|ref|YP_008603987.1| - 0.013 15.7 0.1 0.21 11.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|549455228|ref|YP_008603987.1| - 0.02 14.9 0.5 0.16 12.0 0.4 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|549455228|ref|YP_008603987.1| - 0.027 14.3 0.0 0.17 11.7 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|549455228|ref|YP_008603987.1| - 0.03 13.5 0.2 0.045 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ArgK PF03308.11 gi|549455228|ref|YP_008603987.1| - 0.044 12.5 0.1 0.066 11.9 0.1 1.2 1 0 0 1 1 1 0 ArgK protein AAA_33 PF13671.1 gi|549455228|ref|YP_008603987.1| - 0.063 13.1 0.3 0.22 11.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|549455228|ref|YP_008603987.1| - 0.065 13.0 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 MobB PF03205.9 gi|549455228|ref|YP_008603987.1| - 0.078 12.6 0.1 0.4 10.3 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|549455228|ref|YP_008603987.1| - 0.088 12.5 0.1 0.27 10.9 0.1 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|549455228|ref|YP_008603987.1| - 0.13 11.0 0.7 0.99 8.2 0.2 2.2 2 1 1 3 3 3 0 NB-ARC domain MacB_PCD PF12704.2 gi|549455229|ref|YP_008603988.1| - 4.9e-13 49.1 0.3 4.1e-09 36.3 0.0 2.5 2 0 0 2 2 2 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|549455229|ref|YP_008603988.1| - 3.8e-12 46.0 33.4 6.3e-07 29.1 8.4 4.0 4 0 0 4 4 4 3 FtsX-like permease family AAA_5 PF07728.9 gi|549455230|ref|YP_008603989.1| - 1.1e-08 34.8 0.0 2.4e-08 33.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|549455230|ref|YP_008603989.1| - 2.3e-07 31.6 0.0 4.3e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|549455230|ref|YP_008603989.1| - 1.6e-05 24.9 0.0 3.6e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|549455230|ref|YP_008603989.1| - 2.3e-05 24.5 0.0 8.2e-05 22.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|549455230|ref|YP_008603989.1| - 2.9e-05 24.2 0.0 0.0001 22.4 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|549455230|ref|YP_008603989.1| - 0.00019 20.4 0.0 0.00037 19.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|549455230|ref|YP_008603989.1| - 0.00088 19.1 0.0 0.0069 16.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|549455230|ref|YP_008603989.1| - 0.0011 19.3 0.0 0.002 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|549455230|ref|YP_008603989.1| - 0.0014 18.5 0.0 0.0041 16.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|549455230|ref|YP_008603989.1| - 0.0016 17.5 0.0 0.054 12.5 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|549455230|ref|YP_008603989.1| - 0.0016 17.6 0.0 0.0048 16.0 0.0 1.9 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|549455230|ref|YP_008603989.1| - 0.0023 17.4 0.0 1.3 8.4 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|549455230|ref|YP_008603989.1| - 0.0085 15.8 0.1 0.036 13.8 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_29 PF13555.1 gi|549455230|ref|YP_008603989.1| - 0.026 14.0 0.0 0.049 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|549455230|ref|YP_008603989.1| - 0.036 13.7 0.0 0.069 12.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NTPase_1 PF03266.10 gi|549455230|ref|YP_008603989.1| - 0.038 13.7 0.0 0.088 12.5 0.0 1.6 2 0 0 2 2 1 0 NTPase AAA_25 PF13481.1 gi|549455230|ref|YP_008603989.1| - 0.04 13.3 0.0 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|549455230|ref|YP_008603989.1| - 0.047 12.4 0.0 0.078 11.7 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_30 PF13604.1 gi|549455230|ref|YP_008603989.1| - 0.066 12.7 0.0 0.49 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|549455230|ref|YP_008603989.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase Miro PF08477.8 gi|549455230|ref|YP_008603989.1| - 0.073 13.5 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_28 PF13521.1 gi|549455230|ref|YP_008603989.1| - 0.073 13.0 0.0 0.16 11.9 0.0 1.5 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.22 gi|549455230|ref|YP_008603989.1| - 0.085 13.1 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter MobB PF03205.9 gi|549455230|ref|YP_008603989.1| - 0.089 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|549455230|ref|YP_008603989.1| - 0.092 11.9 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|549455230|ref|YP_008603989.1| - 0.12 11.0 0.0 0.17 10.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein VWA_CoxE PF05762.9 gi|549455232|ref|YP_008603991.1| - 0.0046 16.1 0.4 0.017 14.2 0.0 2.0 3 0 0 3 3 3 1 VWA domain containing CoxE-like protein VCBS PF13517.1 gi|549455233|ref|YP_008603992.1| - 0.007 16.7 0.4 0.016 15.5 0.3 1.6 1 0 0 1 1 1 1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella DUF4307 PF14155.1 gi|549455233|ref|YP_008603992.1| - 0.096 12.4 0.2 0.17 11.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) Acetyltransf_CG PF14542.1 gi|549455235|ref|YP_008603994.1| - 1.4e-19 69.7 0.0 1.9e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.19 gi|549455235|ref|YP_008603994.1| - 1.3e-08 34.7 0.1 1.9e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|549455235|ref|YP_008603994.1| - 4.8e-05 23.4 0.2 6.3e-05 23.0 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|549455235|ref|YP_008603994.1| - 5.6e-05 23.0 0.1 0.00013 21.8 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|549455235|ref|YP_008603994.1| - 0.00031 20.8 0.0 0.00082 19.4 0.0 1.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|549455235|ref|YP_008603994.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Stc1 PF12898.2 gi|549455236|ref|YP_008603995.1| - 0.039 14.0 0.1 0.062 13.3 0.0 1.2 1 0 0 1 1 1 0 Stc1 domain Rnk_N PF14760.1 gi|549455236|ref|YP_008603995.1| - 9.9 6.3 7.3 41 4.3 0.0 3.7 3 1 0 3 3 3 0 Rnk N-terminus tRNA_SAD PF07973.9 gi|549455237|ref|YP_008603996.1| - 7.8e-12 44.8 0.5 1.4e-11 44.0 0.3 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|549455237|ref|YP_008603996.1| - 8.5e-09 34.2 0.0 1.1e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) Cpn60_TCP1 PF00118.19 gi|549455239|ref|YP_008603998.1| - 1e-166 555.3 10.3 1.2e-166 555.1 7.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PCP_red PF08369.5 gi|549455239|ref|YP_008603998.1| - 0.2 11.5 2.7 52 3.8 0.2 4.0 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit adh_short_C2 PF13561.1 gi|549455240|ref|YP_008603999.1| - 1.6e-24 86.9 0.0 2e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|549455240|ref|YP_008603999.1| - 2e-17 63.6 0.8 4.8e-17 62.3 0.0 1.8 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|549455240|ref|YP_008603999.1| - 1.6e-08 34.4 0.1 4.9e-07 29.5 0.0 2.2 1 1 1 2 2 2 1 KR domain NAD_binding_10 PF13460.1 gi|549455240|ref|YP_008603999.1| - 4.7e-05 23.4 0.1 7.7e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|549455240|ref|YP_008603999.1| - 0.091 12.4 0.0 0.19 11.3 0.0 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|549455240|ref|YP_008603999.1| - 0.095 13.2 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain RNA_pol_Rpb6 PF01192.17 gi|549455241|ref|YP_008604000.1| - 3.5e-17 61.8 0.0 4.8e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Peptidase_M50 PF02163.17 gi|549455242|ref|YP_008604001.1| - 1.5e-13 50.1 11.5 1.2e-12 47.1 7.7 2.5 1 1 0 1 1 1 1 Peptidase family M50 OCD_Mu_crystall PF02423.10 gi|549455243|ref|YP_008604002.1| - 3.9e-32 111.2 0.0 5e-32 110.9 0.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|549455243|ref|YP_008604002.1| - 6.7e-08 32.7 0.0 1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|549455243|ref|YP_008604002.1| - 0.0088 16.4 0.0 0.016 15.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.14 gi|549455243|ref|YP_008604002.1| - 0.016 14.3 0.0 0.026 13.5 0.0 1.2 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Saccharop_dh PF03435.13 gi|549455243|ref|YP_008604002.1| - 0.041 12.8 0.1 0.057 12.3 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|549455243|ref|YP_008604002.1| - 0.06 12.5 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Peripla_BP_6 PF13458.1 gi|549455244|ref|YP_008604003.1| - 3.7e-42 144.9 5.7 5.7e-42 144.2 4.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|549455244|ref|YP_008604003.1| - 2.3e-33 115.4 0.3 3.8e-33 114.7 0.2 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.8 gi|549455244|ref|YP_008604003.1| - 1.7e-09 36.8 0.3 2.5e-09 36.2 0.2 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.1 gi|549455244|ref|YP_008604003.1| - 3e-08 32.8 0.1 4.9e-08 32.1 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain DUF4366 PF14283.1 gi|549455244|ref|YP_008604003.1| - 0.0086 15.5 0.1 0.015 14.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4366) ABC_tran PF00005.22 gi|549455245|ref|YP_008604004.1| - 2.5e-29 102.3 0.0 3.1e-29 102.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455245|ref|YP_008604004.1| - 5.1e-13 49.6 0.1 2.8e-06 27.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|549455245|ref|YP_008604004.1| - 1.1e-08 34.5 0.0 2.1e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|549455245|ref|YP_008604004.1| - 4.4e-06 26.0 0.0 0.015 14.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|549455245|ref|YP_008604004.1| - 5.5e-06 25.8 0.1 1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|549455245|ref|YP_008604004.1| - 1.6e-05 24.5 0.2 7.5e-05 22.4 0.1 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_15 PF13175.1 gi|549455245|ref|YP_008604004.1| - 1.8e-05 23.9 0.0 0.062 12.3 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|549455245|ref|YP_008604004.1| - 0.00012 22.4 0.4 0.00017 21.9 0.3 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|549455245|ref|YP_008604004.1| - 0.00023 20.6 0.1 0.02 14.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|549455245|ref|YP_008604004.1| - 0.00045 20.3 0.0 0.0026 17.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|549455245|ref|YP_008604004.1| - 0.00048 18.8 0.6 0.014 14.0 0.3 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|549455245|ref|YP_008604004.1| - 0.0006 19.3 0.9 0.046 13.1 0.1 2.2 2 0 0 2 2 2 1 AAA-like domain Arch_ATPase PF01637.13 gi|549455245|ref|YP_008604004.1| - 0.0014 18.4 0.1 0.043 13.5 0.1 2.1 2 0 0 2 2 2 1 Archaeal ATPase DUF258 PF03193.11 gi|549455245|ref|YP_008604004.1| - 0.004 16.3 0.1 0.0063 15.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|549455245|ref|YP_008604004.1| - 0.0051 16.2 0.0 0.0079 15.6 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_13 PF13166.1 gi|549455245|ref|YP_008604004.1| - 0.0053 15.2 0.0 0.0069 14.9 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|549455245|ref|YP_008604004.1| - 0.0062 16.5 0.1 0.011 15.6 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|549455245|ref|YP_008604004.1| - 0.0091 15.5 0.0 0.031 13.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|549455245|ref|YP_008604004.1| - 0.016 14.7 0.1 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|549455245|ref|YP_008604004.1| - 0.02 13.8 0.1 0.031 13.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|549455245|ref|YP_008604004.1| - 0.037 13.8 0.1 0.079 12.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|549455245|ref|YP_008604004.1| - 0.039 14.7 0.1 0.26 12.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|549455245|ref|YP_008604004.1| - 0.043 14.0 0.1 0.092 12.9 0.1 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|549455245|ref|YP_008604004.1| - 0.047 13.1 0.2 0.089 12.2 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|549455245|ref|YP_008604004.1| - 0.048 13.3 0.1 0.078 12.6 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|549455245|ref|YP_008604004.1| - 0.052 13.2 0.0 0.09 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KaiC PF06745.8 gi|549455245|ref|YP_008604004.1| - 0.077 12.1 1.0 0.58 9.2 0.3 2.0 2 0 0 2 2 2 0 KaiC NACHT PF05729.7 gi|549455245|ref|YP_008604004.1| - 0.087 12.4 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.4 gi|549455245|ref|YP_008604004.1| - 0.094 12.2 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.1 gi|549455245|ref|YP_008604004.1| - 0.1 12.4 0.1 0.24 11.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|549455245|ref|YP_008604004.1| - 0.17 9.1 0.1 0.22 8.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.22 gi|549455246|ref|YP_008604005.1| - 1.6e-30 106.2 0.0 2e-30 105.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455246|ref|YP_008604005.1| - 6.5e-17 62.4 0.0 3.2e-15 56.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|549455246|ref|YP_008604005.1| - 3.6e-07 29.6 0.0 1.9e-05 24.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|549455246|ref|YP_008604005.1| - 1.1e-05 24.7 0.0 0.013 14.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|549455246|ref|YP_008604005.1| - 2.5e-05 24.6 0.1 4e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|549455246|ref|YP_008604005.1| - 8.3e-05 22.7 0.0 0.00067 19.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|549455246|ref|YP_008604005.1| - 0.00014 21.3 0.1 0.00029 20.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|549455246|ref|YP_008604005.1| - 0.00026 20.5 0.0 0.0038 16.7 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|549455246|ref|YP_008604005.1| - 0.0005 19.5 0.0 0.00076 18.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|549455246|ref|YP_008604005.1| - 0.00063 18.4 0.1 0.0018 16.9 0.2 1.6 2 0 0 2 2 2 1 Predicted ATPase of the ABC class ArgK PF03308.11 gi|549455246|ref|YP_008604005.1| - 0.0011 17.8 0.7 0.11 11.1 0.0 2.1 2 0 0 2 2 2 1 ArgK protein AAA_16 PF13191.1 gi|549455246|ref|YP_008604005.1| - 0.0032 17.4 0.0 0.0085 16.0 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|549455246|ref|YP_008604005.1| - 0.0063 15.7 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|549455246|ref|YP_008604005.1| - 0.0082 16.0 0.0 0.21 11.5 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|549455246|ref|YP_008604005.1| - 0.0092 15.5 0.0 0.026 14.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|549455246|ref|YP_008604005.1| - 0.012 15.5 0.0 0.031 14.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|549455246|ref|YP_008604005.1| - 0.013 15.4 0.1 0.029 14.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|549455246|ref|YP_008604005.1| - 0.022 14.4 0.1 0.029 14.0 0.1 1.5 1 1 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|549455246|ref|YP_008604005.1| - 0.029 13.8 0.1 0.043 13.2 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|549455246|ref|YP_008604005.1| - 0.037 13.5 0.0 0.37 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|549455246|ref|YP_008604005.1| - 0.042 12.9 0.3 3.8 6.5 0.1 2.2 2 0 0 2 2 2 0 KaiC MutS_V PF00488.16 gi|549455246|ref|YP_008604005.1| - 0.053 12.9 0.0 0.08 12.3 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_17 PF13207.1 gi|549455246|ref|YP_008604005.1| - 0.069 13.9 0.3 0.21 12.3 0.2 1.9 2 1 0 2 2 1 0 AAA domain Miro PF08477.8 gi|549455246|ref|YP_008604005.1| - 0.069 13.6 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein MMR_HSR1 PF01926.18 gi|549455246|ref|YP_008604005.1| - 0.092 12.7 0.1 0.11 12.4 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase Adeno_IVa2 PF02456.10 gi|549455246|ref|YP_008604005.1| - 0.095 11.3 0.0 0.18 10.4 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein MobB PF03205.9 gi|549455246|ref|YP_008604005.1| - 0.096 12.3 0.3 0.33 10.6 0.1 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Guanylate_kin PF00625.16 gi|549455246|ref|YP_008604005.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase Septin PF00735.13 gi|549455246|ref|YP_008604005.1| - 0.13 11.2 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Septin T2SE PF00437.15 gi|549455246|ref|YP_008604005.1| - 0.14 11.0 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.7 gi|549455246|ref|YP_008604005.1| - 0.14 11.7 0.2 0.23 11.0 0.2 1.3 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|549455246|ref|YP_008604005.1| - 0.15 11.0 0.0 0.54 9.3 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_13 PF13166.1 gi|549455246|ref|YP_008604005.1| - 0.18 10.2 0.2 0.56 8.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.11 gi|549455247|ref|YP_008604006.1| - 6.9e-33 113.7 37.0 8.6e-33 113.4 25.6 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|549455248|ref|YP_008604007.1| - 5.6e-33 114.0 27.3 7.8e-33 113.5 18.9 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Thiolase_N PF00108.18 gi|549455250|ref|YP_008604009.1| - 9.1e-14 51.0 0.6 5.9e-11 41.8 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|549455250|ref|YP_008604009.1| - 6.1e-09 35.3 0.1 2e-07 30.4 0.0 2.6 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|549455250|ref|YP_008604009.1| - 2.5e-08 33.7 4.1 1.1e-07 31.6 2.5 2.1 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|549455250|ref|YP_008604009.1| - 2e-06 27.3 0.4 0.00012 21.6 0.1 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FAE1_CUT1_RppA PF08392.7 gi|549455250|ref|YP_008604009.1| - 0.064 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein DUF35 PF01796.12 gi|549455251|ref|YP_008604010.1| - 5.4e-09 36.1 0.3 9.6e-09 35.3 0.2 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|549455251|ref|YP_008604010.1| - 8.6e-09 35.0 0.0 2.2e-08 33.7 0.0 1.7 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TP_methylase PF00590.15 gi|549455252|ref|YP_008604011.1| - 2.2e-15 56.9 0.3 3.2e-15 56.4 0.2 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|549455253|ref|YP_008604012.1| - 1.3e-11 44.9 0.0 3.7e-11 43.4 0.0 1.6 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.6 gi|549455253|ref|YP_008604012.1| - 0.17 11.3 3.2 2 7.8 2.9 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF1848) DUF1049 PF06305.6 gi|549455254|ref|YP_008604013.1| - 0.38 10.2 10.2 0.18 11.2 1.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) Pyr_redox_2 PF07992.9 gi|549455255|ref|YP_008604014.1| - 2.9e-18 66.4 0.0 6.9e-18 65.2 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|549455255|ref|YP_008604014.1| - 2.2e-10 40.9 0.4 0.0005 20.1 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|549455255|ref|YP_008604014.1| - 1.2e-07 31.6 1.4 2e-07 30.9 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|549455255|ref|YP_008604014.1| - 6.7e-07 29.6 0.1 0.00026 21.3 0.1 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|549455255|ref|YP_008604014.1| - 0.00014 20.8 3.5 0.003 16.5 0.1 2.5 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|549455255|ref|YP_008604014.1| - 0.0002 19.9 0.4 0.00045 18.8 0.2 1.6 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|549455255|ref|YP_008604014.1| - 0.00079 18.5 0.1 0.0014 17.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|549455255|ref|YP_008604014.1| - 0.002 17.6 0.0 0.005 16.4 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|549455255|ref|YP_008604014.1| - 0.0025 17.2 0.1 0.019 14.3 0.1 2.0 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_2 PF00890.19 gi|549455255|ref|YP_008604014.1| - 0.0027 16.6 0.9 0.018 13.8 0.1 2.4 2 1 1 3 3 3 1 FAD binding domain Thi4 PF01946.12 gi|549455255|ref|YP_008604014.1| - 0.02 13.9 0.0 0.038 13.0 0.0 1.4 1 0 0 1 1 1 0 Thi4 family 2-Hacid_dh_C PF02826.14 gi|549455255|ref|YP_008604014.1| - 0.044 12.9 0.1 0.14 11.3 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|549455255|ref|YP_008604014.1| - 0.056 13.4 0.0 13 5.7 0.0 2.7 2 1 0 2 2 2 0 NADH(P)-binding 3HCDH_N PF02737.13 gi|549455255|ref|YP_008604014.1| - 0.066 12.8 0.3 0.11 12.0 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|549455255|ref|YP_008604014.1| - 0.083 13.1 0.0 2.5 8.4 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|549455255|ref|YP_008604014.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|549455255|ref|YP_008604014.1| - 0.17 11.9 0.0 4.1 7.5 0.0 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase GIDA PF01134.17 gi|549455255|ref|YP_008604014.1| - 0.33 9.7 1.9 1.1 8.0 0.5 2.1 1 1 0 2 2 2 0 Glucose inhibited division protein A APH PF01636.18 gi|549455256|ref|YP_008604015.1| - 3e-09 36.9 1.2 0.00035 20.3 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.6 gi|549455256|ref|YP_008604015.1| - 0.015 14.4 0.0 0.024 13.8 0.0 1.3 1 1 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) DUF1096 PF06493.6 gi|549455256|ref|YP_008604015.1| - 0.069 13.1 0.5 0.11 12.5 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1096) DUF504 PF04457.7 gi|549455257|ref|YP_008604016.1| - 3e-15 56.1 4.5 4.5e-15 55.5 3.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF504) BPD_transp_1 PF00528.17 gi|549455259|ref|YP_008604018.1| - 1.3e-11 44.3 18.4 1.3e-11 44.3 12.8 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|549455260|ref|YP_008604019.1| - 1.9e-14 53.5 15.9 1.9e-14 53.5 11.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|549455261|ref|YP_008604020.1| - 7.8e-35 120.1 0.0 1.1e-34 119.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455261|ref|YP_008604020.1| - 1.6e-13 51.2 0.0 4.2e-08 33.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|549455261|ref|YP_008604020.1| - 1.7e-11 43.9 0.6 6e-11 42.1 0.2 2.0 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|549455261|ref|YP_008604020.1| - 1.9e-06 27.2 0.0 0.004 16.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|549455261|ref|YP_008604020.1| - 0.00012 22.1 0.1 0.0024 17.9 0.0 2.5 2 0 0 2 2 2 1 TOBE domain AAA_15 PF13175.1 gi|549455261|ref|YP_008604020.1| - 0.00017 20.7 0.0 0.031 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|549455261|ref|YP_008604020.1| - 0.00019 21.1 0.1 0.00065 19.4 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|549455261|ref|YP_008604020.1| - 0.0002 21.3 0.0 0.00033 20.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|549455261|ref|YP_008604020.1| - 0.00031 20.2 0.1 0.016 14.6 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|549455261|ref|YP_008604020.1| - 0.00039 19.8 0.0 0.00076 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|549455261|ref|YP_008604020.1| - 0.0007 19.9 0.0 0.001 19.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|549455261|ref|YP_008604020.1| - 0.00087 19.4 0.2 0.0085 16.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|549455261|ref|YP_008604020.1| - 0.0028 17.4 0.0 0.0047 16.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|549455261|ref|YP_008604020.1| - 0.0053 16.9 0.2 0.025 14.7 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|549455261|ref|YP_008604020.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|549455261|ref|YP_008604020.1| - 0.016 14.6 0.7 0.14 11.5 0.1 2.0 2 0 0 2 2 2 0 AAA-like domain TOBE_3 PF12857.2 gi|549455261|ref|YP_008604020.1| - 0.019 14.8 0.3 0.073 12.9 0.2 2.1 1 0 0 1 1 1 0 TOBE-like domain Rad17 PF03215.10 gi|549455261|ref|YP_008604020.1| - 0.019 13.6 0.0 0.026 13.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|549455261|ref|YP_008604020.1| - 0.021 14.0 0.0 0.034 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|549455261|ref|YP_008604020.1| - 0.047 13.3 0.7 0.08 12.6 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|549455261|ref|YP_008604020.1| - 0.1 13.4 0.0 0.25 12.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain SbcCD_C PF13558.1 gi|549455261|ref|YP_008604020.1| - 0.14 12.0 0.0 0.99 9.3 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|549455261|ref|YP_008604020.1| - 0.17 11.8 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain SBP_bac_8 PF13416.1 gi|549455262|ref|YP_008604021.1| - 1.6e-34 119.9 0.0 2e-34 119.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|549455262|ref|YP_008604021.1| - 1.3e-25 90.1 0.0 1.8e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|549455262|ref|YP_008604021.1| - 8.4e-21 75.0 0.1 1.1e-20 74.5 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|549455262|ref|YP_008604021.1| - 4.5e-08 33.0 0.0 1.3e-07 31.5 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PrpR_N PF06506.6 gi|549455262|ref|YP_008604021.1| - 0.093 12.1 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Propionate catabolism activator Fer2_3 PF13085.1 gi|549455263|ref|YP_008604022.1| - 1.3e-34 118.3 0.0 2.9e-34 117.2 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.1 gi|549455263|ref|YP_008604022.1| - 1e-08 35.4 1.2 0.012 16.0 0.0 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|549455263|ref|YP_008604022.1| - 1.5e-07 31.3 0.4 1.5e-07 31.3 0.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|549455263|ref|YP_008604022.1| - 4e-07 30.2 0.8 1.3e-06 28.6 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|549455263|ref|YP_008604022.1| - 2.9e-06 26.9 3.6 4.3e-06 26.4 0.2 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|549455263|ref|YP_008604022.1| - 1.2e-05 24.6 1.4 1.2e-05 24.6 0.9 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|549455263|ref|YP_008604022.1| - 1.5e-05 25.3 1.9 1.5e-05 25.3 1.3 2.8 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|549455263|ref|YP_008604022.1| - 5.1e-05 22.9 1.1 5.1e-05 22.9 0.8 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2 PF00111.22 gi|549455263|ref|YP_008604022.1| - 5.6e-05 22.8 0.5 5.6e-05 22.8 0.3 2.5 2 1 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|549455263|ref|YP_008604022.1| - 9e-05 22.2 0.2 0.00017 21.3 0.2 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_6 PF12837.2 gi|549455263|ref|YP_008604022.1| - 0.00022 20.9 0.9 0.00022 20.9 0.6 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|549455263|ref|YP_008604022.1| - 0.00053 20.1 0.7 0.00053 20.1 0.5 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|549455263|ref|YP_008604022.1| - 0.0062 17.2 4.9 0.033 14.9 0.3 3.1 3 1 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|549455263|ref|YP_008604022.1| - 0.012 15.3 0.3 0.012 15.3 0.2 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|549455263|ref|YP_008604022.1| - 0.024 15.2 0.4 0.024 15.2 0.2 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|549455263|ref|YP_008604022.1| - 0.03 14.5 1.7 0.03 14.5 1.2 3.0 2 2 3 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|549455263|ref|YP_008604022.1| - 0.043 14.1 1.5 0.043 14.1 1.1 2.7 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|549455263|ref|YP_008604022.1| - 8 7.2 23.8 0.31 11.7 3.9 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Sdh_cyt PF01127.17 gi|549455264|ref|YP_008604023.1| - 5.3e-07 29.5 9.0 6.6e-07 29.1 6.2 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Bax1-I PF01027.15 gi|549455264|ref|YP_008604023.1| - 0.24 11.0 6.1 0.33 10.5 4.2 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Oxidored_q2 PF00420.19 gi|549455264|ref|YP_008604023.1| - 0.38 10.3 4.9 0.96 9.0 3.4 1.8 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Sdh_cyt PF01127.17 gi|549455265|ref|YP_008604024.1| - 6.4e-13 48.6 5.8 9.2e-13 48.0 3.6 1.5 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SecG PF03840.9 gi|549455265|ref|YP_008604024.1| - 0.013 15.2 1.8 1.4 8.6 0.1 2.3 2 0 0 2 2 2 0 Preprotein translocase SecG subunit Ferric_reduct PF01794.14 gi|549455265|ref|YP_008604024.1| - 0.02 15.0 1.9 0.02 15.0 1.3 2.1 1 1 1 2 2 2 0 Ferric reductase like transmembrane component PepSY_TM_2 PF13703.1 gi|549455265|ref|YP_008604024.1| - 0.14 12.3 0.4 0.14 12.3 0.3 2.4 2 0 0 2 2 2 0 PepSY-associated TM helix DUF4405 PF14358.1 gi|549455265|ref|YP_008604024.1| - 1.5 9.0 10.9 0.49 10.5 0.7 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4405) Cytochrom_B_N PF00033.14 gi|549455265|ref|YP_008604024.1| - 2.4 7.4 11.4 0.65 9.3 0.4 2.4 2 1 0 2 2 2 0 Cytochrome b(N-terminal)/b6/petB FAD_binding_2 PF00890.19 gi|549455266|ref|YP_008604025.1| - 1.5e-108 363.3 0.1 1.8e-108 363.0 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|549455266|ref|YP_008604025.1| - 1.3e-43 147.9 0.3 2e-43 147.3 0.2 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|549455266|ref|YP_008604025.1| - 4.3e-05 23.4 3.3 0.029 14.2 0.1 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|549455266|ref|YP_008604025.1| - 0.0015 17.6 0.2 0.057 12.5 0.1 2.2 2 0 0 2 2 2 1 Thi4 family DAO PF01266.19 gi|549455266|ref|YP_008604025.1| - 0.0022 16.9 1.4 0.0086 15.0 0.8 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|549455266|ref|YP_008604025.1| - 0.014 13.8 0.0 1.8 6.9 0.0 2.3 2 0 0 2 2 2 0 HI0933-like protein NAD_binding_8 PF13450.1 gi|549455266|ref|YP_008604025.1| - 0.061 13.3 0.4 0.54 10.3 0.1 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|549455266|ref|YP_008604025.1| - 0.086 11.6 0.1 0.29 9.9 0.0 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A GCV_H PF01597.14 gi|549455267|ref|YP_008604026.1| - 1.3e-47 160.5 0.1 1.7e-47 160.1 0.1 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|549455267|ref|YP_008604026.1| - 1.7e-05 24.3 0.3 3.7e-05 23.2 0.2 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|549455267|ref|YP_008604026.1| - 0.00018 21.1 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain DUF2505 PF10698.4 gi|549455267|ref|YP_008604026.1| - 0.065 12.7 0.0 0.098 12.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2505) OMPdecase PF00215.19 gi|549455268|ref|YP_008604027.1| - 5.9e-24 84.7 2.7 6.8e-24 84.5 1.9 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|549455268|ref|YP_008604027.1| - 3e-05 23.2 0.1 7.8e-05 21.8 0.1 1.6 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.16 gi|549455268|ref|YP_008604027.1| - 0.0091 15.2 0.7 0.016 14.4 0.1 1.6 1 1 1 2 2 2 1 Histidine biosynthesis protein TIM-br_sig_trns PF09370.5 gi|549455268|ref|YP_008604027.1| - 0.0093 15.0 0.4 0.18 10.8 0.0 2.6 1 1 1 2 2 2 1 TIM-barrel signal transduction protein NanE PF04131.9 gi|549455268|ref|YP_008604027.1| - 0.017 14.1 0.4 0.028 13.3 0.3 1.4 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|549455268|ref|YP_008604027.1| - 0.019 14.2 0.3 0.019 14.2 0.2 1.7 2 0 0 2 2 2 0 PcrB family QRPTase_C PF01729.14 gi|549455268|ref|YP_008604027.1| - 0.041 13.3 0.2 0.11 12.0 0.1 1.7 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Creatininase PF02633.9 gi|549455269|ref|YP_008604028.1| - 1.6e-46 158.3 0.0 1.7e-46 158.2 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase Ion_trans_2 PF07885.11 gi|549455270|ref|YP_008604029.1| - 8.2e-18 63.9 4.6 2.2e-17 62.5 3.2 1.8 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.26 gi|549455270|ref|YP_008604029.1| - 2.5e-14 52.9 6.7 4.5e-14 52.1 4.6 1.5 1 0 0 1 1 1 1 Ion transport protein DUF3008 PF11450.3 gi|549455270|ref|YP_008604029.1| - 0.072 13.2 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknwon function (DUF3008) DUF91 PF01939.11 gi|549455271|ref|YP_008604030.1| - 1.6e-42 145.2 0.0 2e-42 144.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 LSM PF01423.17 gi|549455272|ref|YP_008604031.1| - 2.4e-16 59.0 0.2 3e-16 58.7 0.1 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|549455272|ref|YP_008604031.1| - 0.0061 16.4 0.0 0.0079 16.1 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF1615 PF07759.7 gi|549455272|ref|YP_008604031.1| - 0.048 12.4 0.0 0.048 12.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1615) DNA_binding_1 PF01035.15 gi|549455273|ref|YP_008604032.1| - 1.3e-25 88.9 0.0 2.1e-25 88.2 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain AAA PF00004.24 gi|549455274|ref|YP_008604033.1| - 1.2e-39 135.5 0.0 3e-39 134.2 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.13 gi|549455274|ref|YP_008604033.1| - 1.4e-10 40.8 3.5 1.4e-10 40.8 2.4 1.8 2 0 0 2 2 1 1 MIT (microtubule interacting and transport) domain AAA_16 PF13191.1 gi|549455274|ref|YP_008604033.1| - 7e-08 32.6 0.0 0.00056 19.9 0.0 3.3 1 1 2 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|549455274|ref|YP_008604033.1| - 7.3e-08 32.6 0.0 2.1e-05 24.6 0.0 3.3 1 1 1 2 2 2 1 AAA domain Vps4_C PF09336.5 gi|549455274|ref|YP_008604033.1| - 1e-06 28.5 0.0 7e-06 25.8 0.0 2.1 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_14 PF13173.1 gi|549455274|ref|YP_008604033.1| - 1.1e-06 28.5 0.0 2.4e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|549455274|ref|YP_008604033.1| - 1.5e-06 28.0 0.0 4.9e-05 23.0 0.0 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|549455274|ref|YP_008604033.1| - 1.7e-06 28.0 0.0 3.2e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|549455274|ref|YP_008604033.1| - 1.1e-05 24.5 0.0 0.00019 20.5 0.0 2.4 1 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|549455274|ref|YP_008604033.1| - 1.2e-05 26.1 0.8 5.4e-05 23.9 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|549455274|ref|YP_008604033.1| - 5.4e-05 22.6 0.5 0.0091 15.4 0.1 2.6 2 1 1 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|549455274|ref|YP_008604033.1| - 0.00012 21.9 0.0 0.00034 20.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|549455274|ref|YP_008604033.1| - 0.00018 20.3 0.0 0.00054 18.7 0.0 1.8 1 1 0 1 1 1 1 TIP49 C-terminus Arch_ATPase PF01637.13 gi|549455274|ref|YP_008604033.1| - 0.00025 20.8 0.1 0.68 9.5 0.0 2.6 1 1 1 2 2 2 2 Archaeal ATPase Zeta_toxin PF06414.7 gi|549455274|ref|YP_008604033.1| - 0.00042 19.4 0.0 0.002 17.2 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin TPR_11 PF13414.1 gi|549455274|ref|YP_008604033.1| - 0.00081 18.9 1.6 0.0021 17.6 1.1 1.7 1 0 0 1 1 1 1 TPR repeat RNA_helicase PF00910.17 gi|549455274|ref|YP_008604033.1| - 0.0013 18.8 0.0 0.0073 16.4 0.0 2.2 2 0 0 2 2 2 1 RNA helicase Mg_chelatase PF01078.16 gi|549455274|ref|YP_008604033.1| - 0.0015 17.7 0.1 0.004 16.3 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|549455274|ref|YP_008604033.1| - 0.0022 17.1 0.1 1.3 8.1 0.0 2.6 2 1 1 3 3 3 1 KaiC AAA_19 PF13245.1 gi|549455274|ref|YP_008604033.1| - 0.0022 17.6 0.0 0.009 15.7 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|549455274|ref|YP_008604033.1| - 0.0025 17.2 0.0 0.0043 16.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|549455274|ref|YP_008604033.1| - 0.0038 17.5 1.6 0.018 15.3 0.1 2.9 2 1 1 3 3 3 1 AAA domain AAA_24 PF13479.1 gi|549455274|ref|YP_008604033.1| - 0.015 14.9 0.0 0.034 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|549455274|ref|YP_008604033.1| - 0.017 15.0 0.1 0.046 13.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|549455274|ref|YP_008604033.1| - 0.02 14.5 0.0 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF2075 PF09848.4 gi|549455274|ref|YP_008604033.1| - 0.02 13.8 0.0 0.033 13.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.21 gi|549455274|ref|YP_008604033.1| - 0.02 14.3 0.0 0.089 12.2 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|549455274|ref|YP_008604033.1| - 0.024 13.5 0.0 0.039 12.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_10 PF12846.2 gi|549455274|ref|YP_008604033.1| - 0.029 13.7 0.1 5.9 6.2 0.0 2.9 3 0 0 3 3 3 0 AAA-like domain ResIII PF04851.10 gi|549455274|ref|YP_008604033.1| - 0.05 13.4 0.0 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_3 PF07726.6 gi|549455274|ref|YP_008604033.1| - 0.058 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TPR_6 PF13174.1 gi|549455274|ref|YP_008604033.1| - 0.085 13.3 0.5 0.71 10.4 0.0 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF815 PF05673.8 gi|549455274|ref|YP_008604033.1| - 0.095 11.6 0.0 0.2 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TPR_2 PF07719.12 gi|549455274|ref|YP_008604033.1| - 0.11 12.4 2.9 0.35 10.8 0.2 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat NB-ARC PF00931.17 gi|549455274|ref|YP_008604033.1| - 0.12 11.2 0.0 0.21 10.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PhoH PF02562.11 gi|549455274|ref|YP_008604033.1| - 0.15 11.3 0.0 0.32 10.2 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_11 PF13086.1 gi|549455274|ref|YP_008604033.1| - 0.18 11.3 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain TPR_8 PF13181.1 gi|549455274|ref|YP_008604033.1| - 4.6 7.2 6.1 0.84 9.5 0.3 2.7 3 0 0 3 3 2 0 Tetratricopeptide repeat MarR_2 PF12802.2 gi|549455275|ref|YP_008604034.1| - 1.2e-05 24.9 3.5 2.4e-05 23.8 0.1 3.0 4 1 0 4 4 3 1 MarR family GntR PF00392.16 gi|549455275|ref|YP_008604034.1| - 0.00012 21.4 0.1 0.00031 20.1 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|549455275|ref|YP_008604034.1| - 0.00016 21.3 0.6 0.00043 19.9 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|549455275|ref|YP_008604034.1| - 0.00064 19.6 0.1 0.0014 18.5 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|549455275|ref|YP_008604034.1| - 0.00068 19.7 1.0 0.002 18.1 0.1 2.2 2 0 0 2 2 2 1 Transcriptional regulator RPA_C PF08784.6 gi|549455275|ref|YP_008604034.1| - 0.0028 18.0 0.1 0.41 11.0 0.0 2.4 2 0 0 2 2 2 1 Replication protein A C terminal HTH_Crp_2 PF13545.1 gi|549455275|ref|YP_008604034.1| - 0.0032 17.2 0.2 0.0094 15.7 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|549455275|ref|YP_008604034.1| - 0.0033 16.7 0.3 0.0033 16.7 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|549455275|ref|YP_008604034.1| - 0.0036 17.6 0.2 0.021 15.1 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain PaaX PF07848.7 gi|549455275|ref|YP_008604034.1| - 0.0047 16.9 1.4 0.024 14.6 0.2 2.4 2 0 0 2 2 2 1 PaaX-like protein UBA_3 PF09288.5 gi|549455275|ref|YP_008604034.1| - 0.0075 15.8 0.9 0.2 11.2 0.1 2.9 3 0 0 3 3 3 1 Fungal ubiquitin-associated domain LexA_DNA_bind PF01726.11 gi|549455275|ref|YP_008604034.1| - 0.011 15.2 0.1 0.034 13.7 0.1 1.8 1 0 0 1 1 1 0 LexA DNA binding domain IF2_N PF04760.10 gi|549455275|ref|YP_008604034.1| - 0.012 15.2 0.2 0.056 13.1 0.1 2.1 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_20 PF12840.2 gi|549455275|ref|YP_008604034.1| - 0.012 15.3 0.1 5.7 6.8 0.0 3.8 3 1 0 3 3 3 0 Helix-turn-helix domain MarR PF01047.17 gi|549455275|ref|YP_008604034.1| - 0.017 14.7 0.1 0.05 13.3 0.1 1.7 1 0 0 1 1 1 0 MarR family UME PF08064.8 gi|549455275|ref|YP_008604034.1| - 0.019 14.9 0.3 0.14 12.1 0.1 2.3 1 1 1 2 2 2 0 UME (NUC010) domain DDRGK PF09756.4 gi|549455275|ref|YP_008604034.1| - 0.028 13.8 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain HTH_CodY PF08222.6 gi|549455275|ref|YP_008604034.1| - 0.051 12.9 0.8 0.12 11.6 0.5 1.7 1 0 0 1 1 1 0 CodY helix-turn-helix domain EAP30 PF04157.11 gi|549455275|ref|YP_008604034.1| - 0.081 12.0 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 EAP30/Vps36 family Sulfolobus_pRN PF05584.6 gi|549455275|ref|YP_008604034.1| - 0.16 11.9 1.3 6.9 6.7 0.0 3.1 3 0 0 3 3 3 0 Sulfolobus plasmid regulatory protein Methyltransf_26 PF13659.1 gi|549455276|ref|YP_008604035.1| - 9.9e-16 57.8 0.0 2.2e-15 56.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|549455276|ref|YP_008604035.1| - 2.1e-07 30.4 0.0 4.7e-07 29.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|549455276|ref|YP_008604035.1| - 2.4e-06 28.1 0.0 3.9e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|549455276|ref|YP_008604035.1| - 2.9e-06 26.8 0.0 4.3e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DUF4213 PF13938.1 gi|549455276|ref|YP_008604035.1| - 3.5e-05 23.8 0.0 5.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) Methyltransf_11 PF08241.7 gi|549455276|ref|YP_008604035.1| - 0.00027 21.3 0.1 0.00079 19.8 0.0 1.8 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|549455276|ref|YP_008604035.1| - 0.00046 19.8 0.0 0.00097 18.8 0.0 1.6 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Spermine_synth PF01564.12 gi|549455276|ref|YP_008604035.1| - 0.00052 19.0 0.0 0.0008 18.4 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase PrmA PF06325.8 gi|549455276|ref|YP_008604035.1| - 0.00077 18.6 0.0 0.001 18.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|549455276|ref|YP_008604035.1| - 0.00091 18.8 0.0 0.0011 18.5 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|549455276|ref|YP_008604035.1| - 0.0023 18.2 0.0 0.0036 17.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|549455276|ref|YP_008604035.1| - 0.0024 17.0 0.0 0.14 11.2 0.0 2.5 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|549455276|ref|YP_008604035.1| - 0.021 14.3 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain EamA PF00892.15 gi|549455278|ref|YP_008604037.1| - 1.8e-21 76.4 22.7 1.9e-13 50.5 8.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family Sugar_transport PF06800.7 gi|549455278|ref|YP_008604037.1| - 9.7e-06 24.8 3.9 0.036 13.1 1.1 2.2 1 1 1 2 2 2 2 Sugar transport protein EmrE PF13536.1 gi|549455278|ref|YP_008604037.1| - 0.00053 20.1 23.1 0.013 15.6 0.3 3.3 1 1 2 3 3 3 2 Multidrug resistance efflux transporter UAA PF08449.6 gi|549455278|ref|YP_008604037.1| - 0.052 12.4 2.4 0.051 12.4 0.7 1.7 2 0 0 2 2 2 0 UAA transporter family Metallophos PF00149.23 gi|549455279|ref|YP_008604038.1| - 8.1e-14 51.4 2.2 1.3e-13 50.8 1.5 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase ABC_transp_aux PF09822.4 gi|549455280|ref|YP_008604039.1| - 0.00042 19.8 0.3 0.01 15.3 0.0 2.4 2 1 0 2 2 2 1 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|549455280|ref|YP_008604039.1| - 0.015 15.4 0.0 0.13 12.4 0.0 2.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) Rifin_STEVOR PF02009.11 gi|549455280|ref|YP_008604039.1| - 0.12 12.0 3.2 0.18 11.4 2.2 1.2 1 0 0 1 1 1 0 Rifin/stevor family DUF4259 PF14078.1 gi|549455280|ref|YP_008604039.1| - 0.54 10.7 2.8 6.3 7.3 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4259) SSF PF00474.12 gi|549455281|ref|YP_008604040.1| - 2.9e-22 78.8 27.0 2.9e-22 78.8 18.7 1.7 1 1 0 1 1 1 1 Sodium:solute symporter family DUF2178 PF09946.4 gi|549455281|ref|YP_008604040.1| - 0.086 12.5 0.4 0.086 12.5 0.3 4.0 6 0 0 6 6 6 0 Predicted membrane protein (DUF2178) DUF1152 PF06626.7 gi|549455282|ref|YP_008604041.1| - 5.3e-109 363.9 0.9 6.1e-109 363.7 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) FliD_C PF07195.7 gi|549455283|ref|YP_008604042.1| - 0.0017 17.7 0.1 0.0022 17.3 0.1 1.1 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus RHH_1 PF01402.16 gi|549455283|ref|YP_008604042.1| - 0.0056 16.5 0.1 0.02 14.7 0.0 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Lzipper-MIP1 PF14389.1 gi|549455283|ref|YP_008604042.1| - 0.014 15.4 1.6 0.044 13.8 0.3 2.1 2 1 1 3 3 3 0 Leucine-zipper of ternary complex factor MIP1 Striatin PF08232.7 gi|549455283|ref|YP_008604042.1| - 0.04 14.2 1.7 0.053 13.8 0.4 1.8 2 1 0 2 2 2 0 Striatin family IncA PF04156.9 gi|549455283|ref|YP_008604042.1| - 0.049 13.2 1.1 0.066 12.8 0.4 1.3 2 0 0 2 2 2 0 IncA protein IF2_N PF04760.10 gi|549455283|ref|YP_008604042.1| - 0.093 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region RHH_1 PF01402.16 gi|549455284|ref|YP_008604043.1| - 1.1e-11 44.1 3.0 1.3e-11 43.8 2.1 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|549455284|ref|YP_008604043.1| - 1.2e-06 28.0 3.4 1.5e-06 27.8 2.3 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain PSK_trans_fac PF07704.6 gi|549455284|ref|YP_008604043.1| - 0.0019 18.8 0.0 0.002 18.7 0.0 1.1 1 0 0 1 1 1 1 Rv0623-like transcription factor RHH_4 PF13467.1 gi|549455284|ref|YP_008604043.1| - 0.0037 17.0 0.0 0.0041 16.9 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain RepB-RCR_reg PF10723.4 gi|549455284|ref|YP_008604043.1| - 0.027 14.2 0.0 0.031 14.0 0.0 1.1 1 0 0 1 1 1 0 Replication regulatory protein RepB DUF2191 PF09957.4 gi|549455284|ref|YP_008604043.1| - 0.036 13.8 1.9 0.089 12.6 1.3 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) Sda PF08970.5 gi|549455284|ref|YP_008604043.1| - 0.67 9.4 4.0 0.99 8.9 0.2 2.1 1 1 1 2 2 2 0 Sporulation inhibitor A HrcA_DNA-bdg PF03444.10 gi|549455285|ref|YP_008604044.1| - 2.3e-35 119.8 1.8 2.7e-35 119.6 0.1 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|549455285|ref|YP_008604044.1| - 6.1e-29 99.5 1.6 4.7e-15 55.1 0.1 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|549455285|ref|YP_008604044.1| - 8.2e-08 32.2 0.1 1.7e-07 31.2 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator Pro-kuma_activ PF09286.6 gi|549455285|ref|YP_008604044.1| - 9.5e-05 22.4 0.0 0.074 13.0 0.0 2.3 2 0 0 2 2 2 2 Pro-kumamolisin, activation domain TrmB PF01978.14 gi|549455285|ref|YP_008604044.1| - 0.00036 20.1 0.6 0.02 14.5 0.1 3.3 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|549455285|ref|YP_008604044.1| - 0.00036 20.1 0.1 0.0013 18.3 0.0 2.0 2 0 0 2 2 2 1 HTH domain Fe_dep_repress PF01325.14 gi|549455285|ref|YP_008604044.1| - 0.0034 17.2 2.6 0.0053 16.6 0.4 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TusA PF01206.12 gi|549455285|ref|YP_008604044.1| - 0.011 15.3 0.0 0.096 12.3 0.0 2.5 2 0 0 2 2 2 0 Sulfurtransferase TusA Penicillinase_R PF03965.11 gi|549455285|ref|YP_008604044.1| - 0.016 15.2 0.3 0.15 12.1 0.0 2.4 1 1 1 2 2 2 0 Penicillinase repressor GntR PF00392.16 gi|549455285|ref|YP_008604044.1| - 0.019 14.3 0.7 0.099 12.0 0.1 2.4 2 1 1 3 3 3 0 Bacterial regulatory proteins, gntR family HlyD_3 PF13437.1 gi|549455285|ref|YP_008604044.1| - 0.027 14.7 0.2 0.064 13.6 0.2 1.6 1 0 0 1 1 1 0 HlyD family secretion protein HTH_38 PF13936.1 gi|549455285|ref|YP_008604044.1| - 0.034 13.7 0.1 0.75 9.4 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|549455285|ref|YP_008604044.1| - 0.049 13.9 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|549455285|ref|YP_008604044.1| - 0.12 11.7 0.1 0.39 10.1 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|549455285|ref|YP_008604044.1| - 0.13 11.7 0.3 0.65 9.5 0.0 2.4 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|549455285|ref|YP_008604044.1| - 0.13 11.9 0.2 1.5 8.5 0.0 2.5 3 0 0 3 3 3 0 Homeodomain-like domain MarR_2 PF12802.2 gi|549455285|ref|YP_008604044.1| - 0.14 11.8 0.1 0.51 10.0 0.0 2.0 2 0 0 2 2 2 0 MarR family DUF2192 PF09958.4 gi|549455286|ref|YP_008604045.1| - 1.1e-90 302.8 1.0 1.3e-90 302.7 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) DUF1342 PF07072.6 gi|549455286|ref|YP_008604045.1| - 0.017 14.8 0.0 0.38 10.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1342) GSAP-16 PF14959.1 gi|549455286|ref|YP_008604045.1| - 0.033 13.9 0.0 0.067 12.9 0.0 1.5 1 0 0 1 1 1 0 gamma-Secretase-activating protein C-term PMBR PF09373.5 gi|549455286|ref|YP_008604045.1| - 0.25 11.3 1.8 1.9 8.5 0.1 2.8 3 0 0 3 3 3 0 Pseudomurein-binding repeat KOW PF00467.24 gi|549455287|ref|YP_008604046.1| - 3.3e-05 23.4 0.8 3.3e-05 23.4 0.5 2.1 2 1 0 2 2 2 1 KOW motif Ribosomal_L14e PF01929.12 gi|549455287|ref|YP_008604046.1| - 0.0054 17.0 0.0 0.008 16.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 Cytidylate_kin2 PF13189.1 gi|549455288|ref|YP_008604047.1| - 7.5e-22 78.1 0.2 1.4e-19 70.7 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.1 gi|549455288|ref|YP_008604047.1| - 1.4e-14 54.9 0.1 1.8e-14 54.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|549455288|ref|YP_008604047.1| - 4.8e-13 49.5 0.0 7.7e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|549455288|ref|YP_008604047.1| - 1.8e-09 37.6 0.0 2.8e-09 36.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|549455288|ref|YP_008604047.1| - 3.4e-07 30.2 0.1 7.2e-07 29.2 0.1 1.5 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.17 gi|549455288|ref|YP_008604047.1| - 1.1e-05 25.3 0.0 2.1e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.1 gi|549455288|ref|YP_008604047.1| - 0.0008 19.4 0.9 0.0096 15.9 0.6 2.2 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|549455288|ref|YP_008604047.1| - 0.0011 18.6 0.0 0.018 14.7 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.1 gi|549455288|ref|YP_008604047.1| - 0.0013 18.8 0.1 0.0016 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|549455288|ref|YP_008604047.1| - 0.0014 18.8 0.0 0.0023 18.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|549455288|ref|YP_008604047.1| - 0.0025 17.9 0.0 0.004 17.3 0.0 1.3 1 0 0 1 1 1 1 RNA helicase AAA_10 PF12846.2 gi|549455288|ref|YP_008604047.1| - 0.0065 15.9 0.0 0.0085 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain E3_binding PF02817.12 gi|549455288|ref|YP_008604047.1| - 0.0074 15.8 1.4 13 5.5 0.0 3.5 3 0 0 3 3 3 0 e3 binding domain AAA_16 PF13191.1 gi|549455288|ref|YP_008604047.1| - 0.0092 15.9 0.1 0.013 15.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|549455288|ref|YP_008604047.1| - 0.01 15.5 0.1 0.057 13.1 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain CoaE PF01121.15 gi|549455288|ref|YP_008604047.1| - 0.011 15.1 0.1 1.9 7.8 0.1 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase KTI12 PF08433.5 gi|549455288|ref|YP_008604047.1| - 0.014 14.6 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|549455288|ref|YP_008604047.1| - 0.02 14.6 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_5 PF07728.9 gi|549455288|ref|YP_008604047.1| - 0.026 14.2 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.10 gi|549455288|ref|YP_008604047.1| - 0.03 13.0 0.0 0.038 12.6 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|549455288|ref|YP_008604047.1| - 0.054 12.5 0.0 0.1 11.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin RuvB_N PF05496.7 gi|549455288|ref|YP_008604047.1| - 0.055 12.4 0.0 0.094 11.7 0.0 1.5 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Viral_helicase1 PF01443.13 gi|549455288|ref|YP_008604047.1| - 0.076 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Mg_chelatase PF01078.16 gi|549455288|ref|YP_008604047.1| - 0.077 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.12 gi|549455288|ref|YP_008604047.1| - 0.082 12.4 0.1 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein CobU PF02283.11 gi|549455288|ref|YP_008604047.1| - 0.083 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_25 PF13481.1 gi|549455288|ref|YP_008604047.1| - 0.1 12.0 0.2 0.26 10.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|549455288|ref|YP_008604047.1| - 0.14 12.1 0.1 0.26 11.2 0.0 1.6 2 0 0 2 2 1 0 AAA domain Ribosomal_L34e PF01199.13 gi|549455289|ref|YP_008604048.1| - 2.3e-31 107.8 2.6 2.5e-31 107.7 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e Amidase PF01425.16 gi|549455290|ref|YP_008604049.1| - 6.3e-27 94.5 3.5 3.3e-25 88.8 2.4 2.1 2 0 0 2 2 2 2 Amidase DUF2881 PF11087.3 gi|549455290|ref|YP_008604049.1| - 0.068 12.6 0.6 2.5 7.6 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2881) DUF106 PF01956.11 gi|549455291|ref|YP_008604050.1| - 0.022 14.3 0.2 0.042 13.3 0.1 1.7 1 1 0 1 1 1 0 Integral membrane protein DUF106 Pox_A9 PF04835.7 gi|549455291|ref|YP_008604050.1| - 0.025 14.4 0.4 0.025 14.4 0.3 2.0 3 0 0 3 3 3 0 A9 protein conserved region CopD PF05425.8 gi|549455291|ref|YP_008604050.1| - 0.2 11.8 4.6 2.4 8.4 3.0 2.2 1 1 0 1 1 1 0 Copper resistance protein D AAA_18 PF13238.1 gi|549455292|ref|YP_008604051.1| - 9.7e-13 48.5 0.0 1.4e-12 48.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|549455292|ref|YP_008604051.1| - 1.6e-07 31.5 0.1 2e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|549455292|ref|YP_008604051.1| - 2.7e-07 31.4 0.0 3.6e-07 31.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|549455292|ref|YP_008604051.1| - 1.1e-06 28.2 0.7 8.9e-05 22.1 0.1 2.9 2 1 1 3 3 3 1 Part of AAA domain ATP_bind_1 PF03029.12 gi|549455292|ref|YP_008604051.1| - 1.3e-05 24.8 0.1 0.00016 21.2 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_28 PF13521.1 gi|549455292|ref|YP_008604051.1| - 1.9e-05 24.6 0.0 3e-05 24.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|549455292|ref|YP_008604051.1| - 4.1e-05 23.3 0.6 0.00011 21.9 0.2 1.8 2 0 0 2 2 2 1 NTPase AAA_30 PF13604.1 gi|549455292|ref|YP_008604051.1| - 6.2e-05 22.6 2.3 7.2e-05 22.4 0.1 2.2 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|549455292|ref|YP_008604051.1| - 6.6e-05 22.6 0.2 0.00043 20.0 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|549455292|ref|YP_008604051.1| - 8.7e-05 21.8 0.1 0.00015 21.1 0.0 1.5 1 1 0 1 1 1 1 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|549455292|ref|YP_008604051.1| - 8.9e-05 22.1 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.1 gi|549455292|ref|YP_008604051.1| - 0.00016 21.8 0.1 0.00038 20.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|549455292|ref|YP_008604051.1| - 0.00019 20.9 0.1 0.00022 20.7 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|549455292|ref|YP_008604051.1| - 0.00026 19.8 0.2 0.00053 18.8 0.1 1.5 1 0 0 1 1 1 1 ArgK protein AAA_33 PF13671.1 gi|549455292|ref|YP_008604051.1| - 0.00045 20.1 0.3 0.001 18.9 0.2 1.7 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|549455292|ref|YP_008604051.1| - 0.00052 19.5 0.3 0.0015 18.0 0.1 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|549455292|ref|YP_008604051.1| - 0.0024 18.0 0.0 0.0051 17.0 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|549455292|ref|YP_008604051.1| - 0.0069 16.1 0.0 0.0081 15.8 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|549455292|ref|YP_008604051.1| - 0.011 15.4 0.1 0.016 14.8 0.0 1.4 1 1 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|549455292|ref|YP_008604051.1| - 0.014 14.5 0.2 0.12 11.4 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_14 PF13173.1 gi|549455292|ref|YP_008604051.1| - 0.014 15.2 0.1 0.026 14.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|549455292|ref|YP_008604051.1| - 0.017 14.8 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.12 gi|549455292|ref|YP_008604051.1| - 0.025 13.9 0.0 3 7.1 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase DnaB_C PF03796.10 gi|549455292|ref|YP_008604051.1| - 0.049 12.5 0.0 0.083 11.7 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain 6PF2K PF01591.13 gi|549455292|ref|YP_008604051.1| - 0.051 12.6 0.0 0.081 11.9 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase NB-ARC PF00931.17 gi|549455292|ref|YP_008604051.1| - 0.053 12.3 0.0 0.072 11.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_3 PF07726.6 gi|549455292|ref|YP_008604051.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|549455292|ref|YP_008604051.1| - 0.074 12.6 0.4 0.24 11.0 0.0 2.0 2 1 0 2 2 2 0 Adenylylsulphate kinase CPT PF07931.7 gi|549455292|ref|YP_008604051.1| - 0.085 12.4 0.2 0.17 11.5 0.1 1.5 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein MMR_HSR1 PF01926.18 gi|549455292|ref|YP_008604051.1| - 0.1 12.5 0.1 0.21 11.5 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase KAP_NTPase PF07693.9 gi|549455292|ref|YP_008604051.1| - 0.1 11.5 0.0 0.22 10.4 0.0 1.5 2 0 0 2 2 2 0 KAP family P-loop domain CbiA PF01656.18 gi|549455292|ref|YP_008604051.1| - 0.1 11.9 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2075 PF09848.4 gi|549455292|ref|YP_008604051.1| - 0.11 11.3 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SecY PF00344.15 gi|549455293|ref|YP_008604052.1| - 1.1e-84 284.2 13.3 1.4e-84 284.0 9.2 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|549455293|ref|YP_008604052.1| - 1.1e-11 44.0 1.0 3.1e-11 42.5 0.7 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p PsbX PF06596.6 gi|549455293|ref|YP_008604052.1| - 9.8 5.9 9.5 2.2 8.0 1.7 3.5 3 0 0 3 3 3 0 Photosystem II reaction centre X protein (PsbX) DHBP_synthase PF00926.14 gi|549455295|ref|YP_008604054.1| - 6.4e-52 175.5 0.0 7.4e-52 175.4 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DMRL_synthase PF00885.14 gi|549455296|ref|YP_008604055.1| - 5.6e-11 42.2 0.1 7e-11 41.9 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DKCLD PF08068.7 gi|549455297|ref|YP_008604056.1| - 4e-17 61.8 0.5 5.1e-17 61.5 0.3 1.1 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|549455298|ref|YP_008604057.1| - 7.2e-18 64.0 0.9 1.2e-17 63.3 0.6 1.4 1 0 0 1 1 1 1 PUA domain TruB_N PF01509.13 gi|549455298|ref|YP_008604057.1| - 7.3e-11 42.4 0.0 6.1e-06 26.4 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) PNP_UDP_1 PF01048.15 gi|549455299|ref|YP_008604058.1| - 2.5e-37 128.1 0.1 2.9e-37 127.8 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HPS3_C PF14763.1 gi|549455300|ref|YP_008604059.1| - 0.028 13.4 0.0 0.04 12.8 0.0 1.2 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 3, C-terminal YqhR PF11085.3 gi|549455300|ref|YP_008604059.1| - 2.5 7.6 7.2 2.2 7.7 0.8 3.1 2 1 1 3 3 3 0 Conserved membrane protein YqhR DUF4147 PF13660.1 gi|549455301|ref|YP_008604060.1| - 3.5e-75 252.1 0.0 4.6e-75 251.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|549455301|ref|YP_008604060.1| - 6.5e-36 122.7 0.0 1.2e-35 121.8 0.0 1.5 1 0 0 1 1 1 1 MOFRL family LEA_2 PF03168.8 gi|549455302|ref|YP_008604061.1| - 1.3e-08 35.1 0.0 1.5e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 Late embryogenesis abundant protein Fn3-like PF14310.1 gi|549455302|ref|YP_008604061.1| - 0.058 13.3 0.0 0.097 12.6 0.0 1.6 1 1 0 1 1 1 0 Fibronectin type III-like domain Resolvase PF00239.16 gi|549455303|ref|YP_008604062.1| - 7e-22 77.8 0.4 9e-22 77.4 0.3 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain B12-binding PF02310.14 gi|549455303|ref|YP_008604062.1| - 0.055 13.3 0.0 1 9.2 0.0 2.1 1 1 1 2 2 2 0 B12 binding domain OrfB_Zn_ribbon PF07282.6 gi|549455304|ref|YP_008604063.1| - 8.8e-19 66.9 0.0 2.1e-18 65.7 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DNA_circ_N PF07157.7 gi|549455304|ref|YP_008604063.1| - 0.02 14.9 0.0 0.11 12.6 0.0 2.1 2 0 0 2 2 2 0 DNA circularisation protein N-terminus Ribosomal_L14e PF01929.12 gi|549455305|ref|YP_008604064.1| - 0.081 13.2 0.0 0.093 13.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L14 DUF2029 PF09594.5 gi|549455306|ref|YP_008604065.1| - 5.6e-10 39.1 41.1 5.6e-10 39.1 28.5 3.3 2 1 1 3 3 3 1 Protein of unknown function (DUF2029) Peptidase_M28 PF04389.12 gi|549455307|ref|YP_008604066.1| - 1.6e-21 76.8 0.0 2.9e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|549455307|ref|YP_008604066.1| - 0.0001 21.9 0.1 0.00027 20.5 0.0 1.7 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|549455307|ref|YP_008604066.1| - 0.026 14.0 0.0 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 Peptidase family M20/M25/M40 GvpH PF05455.6 gi|549455307|ref|YP_008604066.1| - 0.17 11.5 0.1 0.26 10.9 0.1 1.2 1 0 0 1 1 1 0 GvpH zf-ribbon_3 PF13248.1 gi|549455308|ref|YP_008604067.1| - 0.0049 16.0 2.9 1.4 8.2 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|549455308|ref|YP_008604067.1| - 0.0087 15.5 1.1 1.8 8.1 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Mu-like_Com PF10122.4 gi|549455308|ref|YP_008604067.1| - 0.0099 14.9 2.4 0.13 11.3 0.1 2.3 2 0 0 2 2 2 1 Mu-like prophage protein Com UPF0547 PF10571.4 gi|549455308|ref|YP_008604067.1| - 0.02 14.5 6.8 0.39 10.4 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|549455308|ref|YP_008604067.1| - 0.034 13.4 1.9 0.17 11.2 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|549455308|ref|YP_008604067.1| - 0.074 12.8 0.4 0.22 11.3 0.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|549455308|ref|YP_008604067.1| - 0.12 12.1 1.8 2.6 7.9 0.0 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.11 gi|549455308|ref|YP_008604067.1| - 0.14 11.9 3.5 1.2 8.8 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-FPG_IleRS PF06827.9 gi|549455308|ref|YP_008604067.1| - 0.46 10.1 6.6 1.6 8.4 0.7 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|549455308|ref|YP_008604067.1| - 0.62 10.0 2.3 9.2 6.3 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|549455308|ref|YP_008604067.1| - 1.2 9.2 4.1 15 5.7 0.1 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|549455308|ref|YP_008604067.1| - 2.8 7.5 11.2 3.9 7.0 1.7 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.1 gi|549455308|ref|YP_008604067.1| - 7.2 6.0 9.0 1.4 8.3 0.6 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding RNA_POL_M_15KD PF02150.11 gi|549455309|ref|YP_008604068.1| - 3.4e-10 39.4 0.4 5.4e-10 38.7 0.3 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.6 gi|549455309|ref|YP_008604068.1| - 2.2e-05 23.8 2.0 0.00013 21.3 1.6 2.0 1 1 1 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|549455309|ref|YP_008604068.1| - 0.00062 18.8 0.9 0.0016 17.5 0.6 1.7 1 1 0 1 1 1 1 Transcription factor zinc-finger DZR PF12773.2 gi|549455309|ref|YP_008604068.1| - 0.0011 18.7 0.4 0.0019 17.9 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|549455309|ref|YP_008604068.1| - 0.0014 18.2 4.0 0.0047 16.5 2.8 1.8 1 1 0 1 1 1 1 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|549455309|ref|YP_008604068.1| - 0.0026 16.9 5.6 0.011 14.9 3.9 1.9 1 1 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|549455309|ref|YP_008604068.1| - 0.003 16.8 2.0 0.0083 15.4 1.4 1.8 1 1 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|549455309|ref|YP_008604068.1| - 0.0035 16.9 0.6 0.0035 16.9 0.4 1.6 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|549455309|ref|YP_008604068.1| - 0.0061 16.4 1.1 0.012 15.5 0.8 1.6 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) IBR PF01485.16 gi|549455309|ref|YP_008604068.1| - 0.013 15.3 0.3 0.023 14.5 0.2 1.4 1 0 0 1 1 1 0 IBR domain zinc_ribbon_2 PF13240.1 gi|549455309|ref|YP_008604068.1| - 0.014 14.8 4.3 0.66 9.5 1.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|549455309|ref|YP_008604068.1| - 0.021 14.6 3.9 0.047 13.4 2.8 1.6 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) C1_1 PF00130.17 gi|549455309|ref|YP_008604068.1| - 0.049 13.3 0.3 0.07 12.8 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PhnA_Zn_Ribbon PF08274.7 gi|549455309|ref|YP_008604068.1| - 0.07 12.9 1.0 2 8.3 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|549455309|ref|YP_008604068.1| - 0.096 12.5 0.9 0.25 11.1 0.6 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|549455309|ref|YP_008604068.1| - 0.16 11.7 4.0 2.7 7.7 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_ribbon_recom PF13408.1 gi|549455309|ref|YP_008604068.1| - 0.3 11.3 5.7 2.2 8.5 4.0 2.4 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain FYDLN_acid PF09538.5 gi|549455309|ref|YP_008604068.1| - 0.45 11.1 3.4 2.4 8.7 2.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DUF1936 PF09151.5 gi|549455309|ref|YP_008604068.1| - 0.45 10.0 4.2 1.1 8.8 2.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1936) zf-C4_Topoisom PF01396.14 gi|549455309|ref|YP_008604068.1| - 0.56 9.7 5.5 0.1 12.1 1.3 1.6 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|549455309|ref|YP_008604068.1| - 0.6 10.1 3.2 10 6.1 0.3 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-tcix PF14952.1 gi|549455309|ref|YP_008604068.1| - 0.63 9.4 3.4 8.8 5.7 0.6 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ISL3 PF14690.1 gi|549455309|ref|YP_008604068.1| - 0.74 9.8 3.3 1.4 9.0 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A2L_zn_ribbon PF08792.5 gi|549455309|ref|YP_008604068.1| - 1.6 8.3 3.7 16 5.1 2.6 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|549455309|ref|YP_008604068.1| - 1.8 8.6 5.7 4.3 7.3 0.4 2.7 1 1 2 3 3 3 0 zinc-finger binding domain of transposase IS66 NOB1_Zn_bind PF08772.6 gi|549455309|ref|YP_008604068.1| - 3.4 7.5 6.5 1.1 9.1 0.4 2.5 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF371 PF04027.8 gi|549455310|ref|YP_008604069.1| - 1.1e-47 160.9 0.0 1.3e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PCMT PF01135.14 gi|549455311|ref|YP_008604070.1| - 1.5e-63 214.1 0.0 1.8e-63 213.8 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|549455311|ref|YP_008604070.1| - 3.1e-09 36.8 0.1 7.4e-09 35.6 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|549455311|ref|YP_008604070.1| - 3.5e-09 36.4 0.0 4.5e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|549455311|ref|YP_008604070.1| - 4.3e-09 36.9 0.0 6.9e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|549455311|ref|YP_008604070.1| - 9.6e-06 24.8 0.0 1.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|549455311|ref|YP_008604070.1| - 3.1e-05 23.1 0.0 4.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.5 gi|549455311|ref|YP_008604070.1| - 5.6e-05 22.7 0.0 8.6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Met_10 PF02475.11 gi|549455311|ref|YP_008604070.1| - 0.00012 21.7 0.0 0.00017 21.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.7 gi|549455311|ref|YP_008604070.1| - 0.00013 22.3 0.0 0.00028 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|549455311|ref|YP_008604070.1| - 0.00058 19.2 0.0 0.0011 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.12 gi|549455311|ref|YP_008604070.1| - 0.002 17.1 0.0 0.0028 16.5 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.1 gi|549455311|ref|YP_008604070.1| - 0.003 17.8 0.0 0.0049 17.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|549455311|ref|YP_008604070.1| - 0.007 17.1 0.0 0.014 16.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_21 PF05050.7 gi|549455311|ref|YP_008604070.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase FkbM domain Methyltransf_23 PF13489.1 gi|549455311|ref|YP_008604070.1| - 0.022 14.4 0.0 0.088 12.5 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|549455311|ref|YP_008604070.1| - 0.025 13.6 0.0 0.038 13.1 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|549455311|ref|YP_008604070.1| - 0.062 12.9 0.0 0.089 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|549455311|ref|YP_008604070.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase DUF1628 PF07790.6 gi|549455312|ref|YP_008604071.1| - 0.00044 20.9 4.0 0.00044 20.9 2.8 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF1628) SdrG_C_C PF10425.4 gi|549455312|ref|YP_008604071.1| - 0.076 12.9 0.4 0.11 12.4 0.3 1.2 1 0 0 1 1 1 0 C-terminus of bacterial fibrinogen-binding adhesin DUF4330 PF14221.1 gi|549455312|ref|YP_008604071.1| - 0.078 12.8 0.4 0.17 11.7 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) Arch_flagellin PF01917.11 gi|549455312|ref|YP_008604071.1| - 0.45 10.1 8.4 1 8.9 5.8 1.6 1 1 0 1 1 1 0 Archaebacterial flagellin TatD_DNase PF01026.16 gi|549455313|ref|YP_008604072.1| - 4.3e-24 85.0 0.0 5.1e-24 84.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase tRNA-synt_1 PF00133.17 gi|549455314|ref|YP_008604073.1| - 8.7e-58 195.7 0.0 3.1e-40 137.7 0.0 3.1 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|549455314|ref|YP_008604073.1| - 1.7e-26 92.7 0.0 3.2e-11 42.5 0.0 4.0 4 0 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|549455314|ref|YP_008604073.1| - 1.7e-21 76.6 0.1 2.9e-21 75.8 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|549455314|ref|YP_008604073.1| - 1.1e-10 41.1 0.0 9.8e-09 34.7 0.0 2.5 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|549455314|ref|YP_008604073.1| - 2.3e-08 33.5 0.0 0.00013 21.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain RecX PF02631.11 gi|549455314|ref|YP_008604073.1| - 0.043 14.0 1.4 4.9 7.3 0.0 3.0 3 0 0 3 3 3 0 RecX family DHDPS PF00701.17 gi|549455315|ref|YP_008604074.1| - 2.1e-48 164.4 0.0 2.5e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ABC_tran PF00005.22 gi|549455316|ref|YP_008604075.1| - 4.7e-20 72.2 0.0 6.3e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455316|ref|YP_008604075.1| - 6.2e-07 29.6 0.0 0.0092 15.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|549455316|ref|YP_008604075.1| - 0.00057 19.9 0.1 0.001 19.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|549455316|ref|YP_008604075.1| - 0.0013 18.3 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|549455316|ref|YP_008604075.1| - 0.0016 17.9 0.0 0.0026 17.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF3584 PF12128.3 gi|549455316|ref|YP_008604075.1| - 0.0021 15.5 0.1 0.0028 15.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_19 PF13245.1 gi|549455316|ref|YP_008604075.1| - 0.0021 17.7 0.1 0.0041 16.8 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|549455316|ref|YP_008604075.1| - 0.006 16.0 0.3 0.013 14.8 0.2 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|549455316|ref|YP_008604075.1| - 0.021 14.9 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 RNA helicase T2SE PF00437.15 gi|549455316|ref|YP_008604075.1| - 0.026 13.4 0.0 0.039 12.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|549455316|ref|YP_008604075.1| - 0.027 13.9 0.0 0.081 12.3 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|549455316|ref|YP_008604075.1| - 0.03 14.6 0.0 0.044 14.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|549455316|ref|YP_008604075.1| - 0.036 13.9 0.0 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|549455316|ref|YP_008604075.1| - 0.039 13.6 0.2 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 NACHT domain UPF0079 PF02367.12 gi|549455316|ref|YP_008604075.1| - 0.048 13.2 0.1 0.076 12.6 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|549455316|ref|YP_008604075.1| - 0.08 12.0 0.1 0.12 11.4 0.1 1.1 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|549455316|ref|YP_008604075.1| - 0.12 13.1 0.1 0.23 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|549455316|ref|YP_008604075.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain Peptidase_C25 PF01364.13 gi|549455316|ref|YP_008604075.1| - 0.19 10.6 0.0 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 Peptidase family C25 ABC2_membrane_4 PF12730.2 gi|549455317|ref|YP_008604076.1| - 1.1e-06 28.0 9.0 1.6e-06 27.4 6.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|549455317|ref|YP_008604076.1| - 0.00083 18.2 13.9 0.0016 17.3 8.6 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|549455317|ref|YP_008604076.1| - 0.0014 17.7 7.2 0.0014 17.7 5.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|549455317|ref|YP_008604076.1| - 0.0014 17.8 10.1 0.0022 17.2 7.0 1.3 1 1 0 1 1 1 1 CcmB protein VWA_2 PF13519.1 gi|549455318|ref|YP_008604077.1| - 3.8e-13 49.9 0.0 4e-12 46.5 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|549455318|ref|YP_008604077.1| - 7.2e-09 35.6 0.0 1.4e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|549455318|ref|YP_008604077.1| - 8.4e-08 32.0 0.0 1.5e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|549455318|ref|YP_008604077.1| - 2.4e-07 30.1 0.1 2.4e-07 30.1 0.1 2.5 3 1 0 3 3 3 1 VWA domain containing CoxE-like protein AAA_5 PF07728.9 gi|549455319|ref|YP_008604078.1| - 7.3e-28 97.0 0.0 1.9e-27 95.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|549455319|ref|YP_008604078.1| - 2e-06 27.4 0.0 3.2e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|549455319|ref|YP_008604078.1| - 2.2e-05 23.7 1.7 0.00051 19.2 0.0 3.2 4 0 0 4 4 4 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|549455319|ref|YP_008604078.1| - 0.00012 22.2 0.0 0.00055 20.1 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|549455319|ref|YP_008604078.1| - 0.00017 21.6 1.1 0.00046 20.2 0.8 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|549455319|ref|YP_008604078.1| - 0.0012 19.0 0.1 0.019 15.1 0.0 3.0 2 2 1 3 3 3 1 AAA domain Sigma54_activat PF00158.21 gi|549455319|ref|YP_008604078.1| - 0.0062 16.0 0.0 0.044 13.2 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|549455319|ref|YP_008604078.1| - 0.0093 16.7 0.1 0.053 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|549455319|ref|YP_008604078.1| - 0.016 14.7 0.0 0.043 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain MCM PF00493.18 gi|549455319|ref|YP_008604078.1| - 0.019 13.8 0.0 0.054 12.3 0.0 1.7 2 0 0 2 2 2 0 MCM2/3/5 family AAA_19 PF13245.1 gi|549455319|ref|YP_008604078.1| - 0.052 13.2 0.0 0.18 11.6 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain dCMP_cyt_deam_1 PF00383.17 gi|549455320|ref|YP_008604079.1| - 4.5e-16 58.3 0.0 5.2e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|549455320|ref|YP_008604079.1| - 5.8e-09 36.0 0.2 8.1e-09 35.5 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|549455320|ref|YP_008604079.1| - 0.00095 18.5 1.4 0.12 11.7 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases Wzt_C PF14524.1 gi|549455320|ref|YP_008604079.1| - 0.039 13.6 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 Wzt C-terminal domain DsbB PF02600.11 gi|549455321|ref|YP_008604080.1| - 6.1 6.6 11.4 3.9 7.2 1.5 2.2 1 1 1 2 2 2 0 Disulfide bond formation protein DsbB Sm_multidrug_ex PF06695.6 gi|549455322|ref|YP_008604081.1| - 2.9e-27 95.2 1.3 3.6e-27 94.9 0.9 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein SNARE_assoc PF09335.6 gi|549455322|ref|YP_008604081.1| - 0.0023 18.1 8.9 0.0083 16.3 5.5 2.0 1 1 1 2 2 2 2 SNARE associated Golgi protein DUF760 PF05542.6 gi|549455323|ref|YP_008604082.1| - 0.0061 16.7 0.3 0.024 14.7 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF760) Pyr_redox_2 PF07992.9 gi|549455324|ref|YP_008604083.1| - 6.2e-15 55.6 0.0 1.1e-14 54.7 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|549455324|ref|YP_008604083.1| - 2.8e-07 29.7 0.1 0.012 14.5 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|549455324|ref|YP_008604083.1| - 4e-06 27.1 0.3 0.41 11.0 0.5 3.7 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|549455324|ref|YP_008604083.1| - 0.00014 21.8 0.2 0.00042 20.2 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|549455324|ref|YP_008604083.1| - 0.00075 18.2 0.1 0.0014 17.3 0.0 1.4 1 0 0 1 1 1 1 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|549455324|ref|YP_008604083.1| - 0.0013 18.5 0.0 0.23 11.2 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|549455324|ref|YP_008604083.1| - 0.0036 15.8 0.0 0.26 9.6 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|549455324|ref|YP_008604083.1| - 0.0045 15.9 0.0 0.007 15.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|549455324|ref|YP_008604083.1| - 0.012 15.6 0.0 0.77 9.7 0.1 2.4 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Nitroreductase PF00881.19 gi|549455325|ref|YP_008604084.1| - 4.2e-26 91.7 0.2 1e-25 90.5 0.1 1.6 1 1 0 1 1 1 1 Nitroreductase family Peptidase_M48 PF01435.13 gi|549455326|ref|YP_008604085.1| - 3.9e-39 134.5 0.0 5.7e-39 133.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Zn_peptidase_2 PF04298.7 gi|549455326|ref|YP_008604085.1| - 0.011 15.0 2.6 0.037 13.3 1.8 1.8 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase Peptidase_M56 PF05569.6 gi|549455326|ref|YP_008604085.1| - 0.051 12.5 0.9 0.072 12.0 0.1 1.7 2 1 0 2 2 2 0 BlaR1 peptidase M56 IF-2B PF01008.12 gi|549455327|ref|YP_008604086.1| - 5e-25 88.0 0.0 2e-24 86.0 0.0 1.8 1 1 0 1 1 1 1 Initiation factor 2 subunit family T2SF PF00482.18 gi|549455327|ref|YP_008604086.1| - 0.00023 21.0 0.6 0.00039 20.3 0.4 1.3 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F YjeF_N PF03853.10 gi|549455327|ref|YP_008604086.1| - 0.002 17.7 0.1 0.0033 17.0 0.1 1.3 1 0 0 1 1 1 1 YjeF-related protein N-terminus KA1 PF02149.14 gi|549455327|ref|YP_008604086.1| - 0.14 11.6 0.0 0.3 10.5 0.0 1.6 1 0 0 1 1 1 0 Kinase associated domain 1 Peripla_BP_2 PF01497.13 gi|549455328|ref|YP_008604087.1| - 5.8e-37 127.0 1.7 1.1e-36 126.1 0.0 2.0 2 0 0 2 2 2 1 Periplasmic binding protein Tropomyosin PF00261.15 gi|549455328|ref|YP_008604087.1| - 4.2e-07 29.2 2.9 6.2e-07 28.7 2.0 1.2 1 0 0 1 1 1 1 Tropomyosin DUF2730 PF10805.3 gi|549455328|ref|YP_008604087.1| - 6.1e-07 29.1 1.5 1.9e-05 24.3 0.2 3.0 2 1 1 3 3 3 1 Protein of unknown function (DUF2730) Reo_sigmaC PF04582.7 gi|549455328|ref|YP_008604087.1| - 1.2e-06 27.9 13.5 9.3e-05 21.7 1.2 2.0 1 1 1 2 2 2 2 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|549455328|ref|YP_008604087.1| - 2.3e-06 27.7 3.0 0.039 14.2 1.6 3.3 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.4 gi|549455328|ref|YP_008604087.1| - 3.8e-06 26.8 8.5 0.00036 20.4 0.1 2.6 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_II PF06009.7 gi|549455328|ref|YP_008604087.1| - 1.1e-05 25.1 2.9 0.044 13.5 0.6 2.2 1 1 1 2 2 2 2 Laminin Domain II Tropomyosin_1 PF12718.2 gi|549455328|ref|YP_008604087.1| - 5.1e-05 23.1 6.7 8.2e-05 22.4 3.6 1.9 1 1 1 2 2 2 1 Tropomyosin like Atg14 PF10186.4 gi|549455328|ref|YP_008604087.1| - 6.2e-05 22.0 1.4 0.00012 21.1 1.0 1.4 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Spc7 PF08317.6 gi|549455328|ref|YP_008604087.1| - 8.7e-05 21.3 5.0 0.00013 20.8 3.5 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein FlaC_arch PF05377.6 gi|549455328|ref|YP_008604087.1| - 0.00012 21.9 3.4 0.63 9.9 0.1 4.0 2 1 2 4 4 4 1 Flagella accessory protein C (FlaC) Baculo_PEP_C PF04513.7 gi|549455328|ref|YP_008604087.1| - 0.0002 21.2 2.7 0.018 14.8 1.9 2.4 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.7 gi|549455328|ref|YP_008604087.1| - 0.00026 20.7 1.7 0.046 13.5 0.0 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) HemX PF04375.9 gi|549455328|ref|YP_008604087.1| - 0.00033 19.3 8.0 0.099 11.2 3.6 2.2 1 1 1 2 2 2 2 HemX Cast PF10174.4 gi|549455328|ref|YP_008604087.1| - 0.00044 18.4 8.1 0.00058 18.0 5.6 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone KxDL PF10241.4 gi|549455328|ref|YP_008604087.1| - 0.00045 20.0 0.7 0.85 9.5 0.5 2.8 1 1 1 2 2 2 2 Uncharacterized conserved protein DUF2408 PF10303.4 gi|549455328|ref|YP_008604087.1| - 0.00049 20.2 2.4 0.0099 15.9 1.4 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2408) IFT57 PF10498.4 gi|549455328|ref|YP_008604087.1| - 0.00052 18.8 2.6 0.00077 18.3 1.8 1.2 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 AAA_27 PF13514.1 gi|549455328|ref|YP_008604087.1| - 0.00069 17.4 3.7 0.0011 16.8 2.6 1.2 1 0 0 1 1 1 1 AAA domain TBPIP PF07106.8 gi|549455328|ref|YP_008604087.1| - 0.00073 19.1 5.6 0.11 12.0 1.1 2.2 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Snapin_Pallidin PF14712.1 gi|549455328|ref|YP_008604087.1| - 0.00085 19.5 3.1 1.4 9.2 0.0 2.9 1 1 1 2 2 2 0 Snapin/Pallidin RmuC PF02646.11 gi|549455328|ref|YP_008604087.1| - 0.00099 18.0 4.8 0.1 11.3 0.1 2.2 1 1 1 2 2 2 2 RmuC family Nup54 PF13874.1 gi|549455328|ref|YP_008604087.1| - 0.0012 18.5 5.6 0.0015 18.1 2.3 2.0 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 DUF948 PF06103.6 gi|549455328|ref|YP_008604087.1| - 0.0014 18.4 0.8 1.8 8.5 0.1 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) FimP PF09766.4 gi|549455328|ref|YP_008604087.1| - 0.0014 17.7 0.7 0.6 9.1 0.2 2.1 1 1 1 2 2 2 1 Fms-interacting protein AAA_13 PF13166.1 gi|549455328|ref|YP_008604087.1| - 0.0015 17.0 1.3 0.0029 16.1 0.9 1.4 1 1 0 1 1 1 1 AAA domain Taxilin PF09728.4 gi|549455328|ref|YP_008604087.1| - 0.0019 17.3 0.5 0.016 14.3 0.1 1.9 1 1 1 2 2 2 1 Myosin-like coiled-coil protein EzrA PF06160.7 gi|549455328|ref|YP_008604087.1| - 0.002 16.4 4.9 0.47 8.5 0.6 2.0 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Fib_alpha PF08702.5 gi|549455328|ref|YP_008604087.1| - 0.0022 18.1 1.6 0.0051 16.9 1.1 1.6 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family ERM PF00769.14 gi|549455328|ref|YP_008604087.1| - 0.0025 17.4 0.2 0.0034 16.9 0.1 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family TelA PF05816.6 gi|549455328|ref|YP_008604087.1| - 0.003 16.3 2.8 0.0048 15.6 2.0 1.3 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) TPR_MLP1_2 PF07926.7 gi|549455328|ref|YP_008604087.1| - 0.0039 16.9 8.3 0.73 9.5 0.1 2.2 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein Spectrin PF00435.16 gi|549455328|ref|YP_008604087.1| - 0.0043 17.3 4.5 0.011 15.9 1.2 2.5 1 1 1 2 2 2 1 Spectrin repeat CALCOCO1 PF07888.6 gi|549455328|ref|YP_008604087.1| - 0.0043 15.4 1.9 0.0059 14.9 1.3 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like IncA PF04156.9 gi|549455328|ref|YP_008604087.1| - 0.0054 16.3 25.4 0.28 10.7 18.3 3.2 2 1 0 2 2 1 1 IncA protein FH2 PF02181.18 gi|549455328|ref|YP_008604087.1| - 0.0057 15.5 2.0 0.61 8.9 0.4 2.1 1 1 1 2 2 2 1 Formin Homology 2 Domain DUF342 PF03961.8 gi|549455328|ref|YP_008604087.1| - 0.0064 14.9 1.8 0.59 8.4 0.4 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF342) TBCA PF02970.11 gi|549455328|ref|YP_008604087.1| - 0.0085 16.1 0.6 0.02 14.9 0.4 1.6 1 0 0 1 1 1 1 Tubulin binding cofactor A DUF3584 PF12128.3 gi|549455328|ref|YP_008604087.1| - 0.0094 13.3 5.1 0.013 12.9 3.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) CENP-Q PF13094.1 gi|549455328|ref|YP_008604087.1| - 0.01 15.8 5.8 0.01 15.8 4.0 2.3 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2884 PF11101.3 gi|549455328|ref|YP_008604087.1| - 0.011 15.1 1.1 0.019 14.3 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) APG6 PF04111.7 gi|549455328|ref|YP_008604087.1| - 0.012 14.6 5.3 0.017 14.1 3.7 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 FUSC PF04632.7 gi|549455328|ref|YP_008604087.1| - 0.013 13.9 1.0 0.019 13.4 0.7 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family ALIX_LYPXL_bnd PF13949.1 gi|549455328|ref|YP_008604087.1| - 0.013 14.4 6.9 0.021 13.7 4.8 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Dynamitin PF04912.9 gi|549455328|ref|YP_008604087.1| - 0.014 14.2 2.1 0.025 13.4 1.5 1.4 1 0 0 1 1 1 0 Dynamitin Matrilin_ccoil PF10393.4 gi|549455328|ref|YP_008604087.1| - 0.015 14.6 6.2 0.23 10.8 0.1 3.7 4 0 0 4 4 3 0 Trimeric coiled-coil oligomerisation domain of matrilin Phasin PF05597.6 gi|549455328|ref|YP_008604087.1| - 0.015 15.0 3.9 0.015 15.0 0.7 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) ATG16 PF08614.6 gi|549455328|ref|YP_008604087.1| - 0.016 15.0 8.5 0.16 11.7 2.6 2.1 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) HrpB7 PF09486.5 gi|549455328|ref|YP_008604087.1| - 0.017 15.0 7.0 0.046 13.6 4.8 1.7 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) MutS_III PF05192.13 gi|549455328|ref|YP_008604087.1| - 0.017 14.8 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 MutS domain III Filament PF00038.16 gi|549455328|ref|YP_008604087.1| - 0.018 14.5 8.7 0.12 11.7 6.0 1.9 1 1 0 1 1 1 0 Intermediate filament protein BMFP PF04380.8 gi|549455328|ref|YP_008604087.1| - 0.02 15.0 7.1 0.36 11.0 1.1 3.7 4 0 0 4 4 3 0 Membrane fusogenic activity COG2 PF06148.6 gi|549455328|ref|YP_008604087.1| - 0.02 14.7 5.2 1.1 9.1 0.2 2.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TMF_TATA_bd PF12325.3 gi|549455328|ref|YP_008604087.1| - 0.02 14.6 6.9 0.16 11.7 3.5 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Mnd1 PF03962.10 gi|549455328|ref|YP_008604087.1| - 0.022 14.4 6.0 0.21 11.2 1.4 2.1 1 1 1 2 2 2 0 Mnd1 family DUF869 PF05911.6 gi|549455328|ref|YP_008604087.1| - 0.023 12.9 3.1 0.032 12.4 2.2 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) RP-C_C PF11800.3 gi|549455328|ref|YP_008604087.1| - 0.023 14.3 2.3 0.084 12.5 1.1 2.2 2 1 0 2 2 1 0 Replication protein C C-terminal region V_ATPase_I PF01496.14 gi|549455328|ref|YP_008604087.1| - 0.024 12.4 1.6 0.11 10.2 1.3 1.7 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family BLOC1_2 PF10046.4 gi|549455328|ref|YP_008604087.1| - 0.025 14.6 5.3 1.3 9.1 0.1 2.7 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Allexi_40kDa PF05549.6 gi|549455328|ref|YP_008604087.1| - 0.026 13.8 1.5 0.51 9.5 0.7 2.1 1 1 2 3 3 3 0 Allexivirus 40kDa protein DUF3373 PF11853.3 gi|549455328|ref|YP_008604087.1| - 0.027 13.0 1.0 3.7 5.9 1.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3373) MAP65_ASE1 PF03999.7 gi|549455328|ref|YP_008604087.1| - 0.029 12.9 3.0 0.04 12.5 2.1 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) MCPsignal PF00015.16 gi|549455328|ref|YP_008604087.1| - 0.03 13.8 1.9 0.054 13.0 1.3 1.4 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Prefoldin_2 PF01920.15 gi|549455328|ref|YP_008604087.1| - 0.03 14.0 7.1 12 5.7 0.2 3.8 1 1 1 2 2 2 0 Prefoldin subunit PspA_IM30 PF04012.7 gi|549455328|ref|YP_008604087.1| - 0.036 13.4 9.0 0.087 12.1 6.3 1.6 1 1 0 1 1 1 0 PspA/IM30 family Mating_N PF12731.2 gi|549455328|ref|YP_008604087.1| - 0.041 13.7 2.3 0.043 13.6 0.7 1.7 2 0 0 2 2 1 0 Mating-type protein beta 1 Seryl_tRNA_N PF02403.17 gi|549455328|ref|YP_008604087.1| - 0.043 13.8 5.5 3.5 7.6 0.1 2.8 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain GAS PF13851.1 gi|549455328|ref|YP_008604087.1| - 0.043 12.9 2.6 0.83 8.8 0.9 1.8 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Bacillus_HBL PF05791.6 gi|549455328|ref|YP_008604087.1| - 0.049 12.9 0.9 6.4 6.1 0.0 2.2 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Spc24 PF08286.6 gi|549455328|ref|YP_008604087.1| - 0.051 13.2 6.7 4.6 6.9 2.1 3.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 HOOK PF05622.7 gi|549455328|ref|YP_008604087.1| - 0.052 11.3 4.1 0.078 10.7 2.8 1.1 1 0 0 1 1 1 0 HOOK protein MscS_porin PF12795.2 gi|549455328|ref|YP_008604087.1| - 0.055 12.7 15.8 8.9 5.5 7.2 2.1 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain HALZ PF02183.13 gi|549455328|ref|YP_008604087.1| - 0.067 12.9 6.3 1.8 8.3 0.6 3.2 3 0 0 3 3 3 0 Homeobox associated leucine zipper FliJ PF02050.11 gi|549455328|ref|YP_008604087.1| - 0.072 13.1 10.6 0.38 10.8 3.2 2.3 2 0 0 2 2 2 0 Flagellar FliJ protein DUF972 PF06156.8 gi|549455328|ref|YP_008604087.1| - 0.076 13.3 4.0 0.74 10.1 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Flagellin_C PF00700.16 gi|549455328|ref|YP_008604087.1| - 0.079 13.1 1.6 7 6.8 0.1 3.3 2 1 1 3 3 3 0 Bacterial flagellin C-terminal helical region Mod_r PF07200.8 gi|549455328|ref|YP_008604087.1| - 0.092 12.6 5.9 1.1 9.2 1.3 2.2 1 1 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Prefoldin PF02996.12 gi|549455328|ref|YP_008604087.1| - 0.096 12.3 7.6 6 6.5 0.1 3.6 1 1 3 4 4 4 0 Prefoldin subunit Ada3 PF10198.4 gi|549455328|ref|YP_008604087.1| - 0.11 12.2 0.7 0.19 11.4 0.5 1.4 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 Rootletin PF15035.1 gi|549455328|ref|YP_008604087.1| - 0.11 12.4 8.4 3.3 7.6 4.4 2.1 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Laminin_I PF06008.9 gi|549455328|ref|YP_008604087.1| - 0.11 11.7 8.2 0.36 10.1 0.6 2.1 1 1 0 1 1 1 0 Laminin Domain I APG17 PF04108.7 gi|549455328|ref|YP_008604087.1| - 0.11 11.2 1.2 0.22 10.3 0.3 1.6 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF1488 PF07369.6 gi|549455328|ref|YP_008604087.1| - 0.11 12.3 0.1 0.76 9.6 0.0 2.3 2 0 0 2 2 1 0 Protein of unknown function (DUF1488) DUF677 PF05055.7 gi|549455328|ref|YP_008604087.1| - 0.11 11.0 0.1 0.18 10.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF677) DUF1978 PF09321.5 gi|549455328|ref|YP_008604087.1| - 0.12 11.8 3.4 0.18 11.2 2.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) ADIP PF11559.3 gi|549455328|ref|YP_008604087.1| - 0.13 12.2 5.6 0.97 9.3 1.5 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Prominin PF05478.6 gi|549455328|ref|YP_008604087.1| - 0.13 9.7 0.7 0.2 9.1 0.5 1.2 1 0 0 1 1 1 0 Prominin YgaB PF14182.1 gi|549455328|ref|YP_008604087.1| - 0.14 12.4 0.4 0.94 9.7 0.2 2.4 2 1 1 3 3 1 0 YgaB-like protein Syntaxin-6_N PF09177.6 gi|549455328|ref|YP_008604087.1| - 0.14 12.5 9.2 4.3 7.8 5.6 3.2 2 1 0 2 2 1 0 Syntaxin 6, N-terminal CR6_interact PF10147.4 gi|549455328|ref|YP_008604087.1| - 0.14 11.4 0.3 0.23 10.7 0.2 1.3 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 FliD_C PF07195.7 gi|549455328|ref|YP_008604087.1| - 0.14 11.4 0.7 0.31 10.3 0.5 1.6 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus CDC37_N PF03234.9 gi|549455328|ref|YP_008604087.1| - 0.14 12.4 0.5 0.21 11.8 0.4 1.2 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding DUF211 PF02680.9 gi|549455328|ref|YP_008604087.1| - 0.14 11.9 0.1 0.59 9.9 0.0 2.1 2 0 0 2 2 1 0 Uncharacterized ArCR, COG1888 TMF_DNA_bd PF12329.3 gi|549455328|ref|YP_008604087.1| - 0.15 11.8 7.3 0.11 12.3 1.8 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding XhlA PF10779.4 gi|549455328|ref|YP_008604087.1| - 0.15 11.9 0.9 16 5.5 0.0 3.3 1 1 1 2 2 2 0 Haemolysin XhlA Herpes_U30 PF04523.8 gi|549455328|ref|YP_008604087.1| - 0.16 9.4 1.0 0.44 7.9 0.3 1.6 1 1 1 2 2 2 0 Herpes virus tegument protein U30 phiKZ_IP PF12699.2 gi|549455328|ref|YP_008604087.1| - 0.16 10.8 3.0 4.2 6.2 0.1 3.0 2 1 1 3 3 3 0 phiKZ-like phage internal head proteins WXG100 PF06013.7 gi|549455328|ref|YP_008604087.1| - 0.17 11.9 8.6 5.4 7.0 0.0 4.0 1 1 2 3 3 3 0 Proteins of 100 residues with WXG HCMV_UL139 PF12507.3 gi|549455328|ref|YP_008604087.1| - 0.18 11.9 1.2 3.1 7.9 0.0 2.2 1 1 1 2 2 2 0 Human Cytomegalovirus UL139 protein DUF4201 PF13870.1 gi|549455328|ref|YP_008604087.1| - 0.19 11.1 1.3 1.4 8.3 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) EAP30 PF04157.11 gi|549455328|ref|YP_008604087.1| - 0.19 10.8 5.2 1.1 8.3 1.8 2.4 1 1 1 2 2 2 0 EAP30/Vps36 family Uds1 PF15456.1 gi|549455328|ref|YP_008604087.1| - 0.2 11.6 8.1 2.4 8.1 1.8 3.2 1 1 0 2 2 2 0 Up-regulated During Septation DUF16 PF01519.11 gi|549455328|ref|YP_008604087.1| - 0.23 11.7 2.6 8.8 6.6 1.0 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 Tmemb_cc2 PF10267.4 gi|549455328|ref|YP_008604087.1| - 0.27 9.8 8.4 1 7.8 5.9 1.7 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein HR1 PF02185.11 gi|549455328|ref|YP_008604087.1| - 0.27 11.0 9.6 2.8 7.7 0.6 3.5 2 2 1 3 3 3 0 Hr1 repeat Vps53_N PF04100.7 gi|549455328|ref|YP_008604087.1| - 0.29 9.8 1.4 0.43 9.3 1.0 1.2 1 0 0 1 1 1 0 Vps53-like, N-terminal Fmp27_WPPW PF10359.4 gi|549455328|ref|YP_008604087.1| - 0.29 9.4 3.4 1.9 6.7 2.4 1.9 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Fez1 PF06818.10 gi|549455328|ref|YP_008604087.1| - 0.31 11.0 5.2 0.46 10.4 3.6 1.2 1 0 0 1 1 1 0 Fez1 PspB PF06667.7 gi|549455328|ref|YP_008604087.1| - 0.32 10.9 12.6 2.4 8.1 0.5 3.9 1 1 3 4 4 3 0 Phage shock protein B Syntaxin PF00804.20 gi|549455328|ref|YP_008604087.1| - 0.36 11.0 6.6 2.2 8.4 4.6 2.2 1 1 0 1 1 1 0 Syntaxin FlxA PF14282.1 gi|549455328|ref|YP_008604087.1| - 0.38 10.7 9.8 1.1 9.1 4.3 2.5 1 1 2 3 3 3 0 FlxA-like protein DUF4200 PF13863.1 gi|549455328|ref|YP_008604087.1| - 0.4 10.6 10.0 1.8 8.4 0.4 3.7 1 1 2 4 4 4 0 Domain of unknown function (DUF4200) CorA PF01544.13 gi|549455328|ref|YP_008604087.1| - 0.41 9.6 6.3 0.45 9.5 3.5 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4164 PF13747.1 gi|549455328|ref|YP_008604087.1| - 0.43 10.7 12.8 4.2 7.5 5.7 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Macoilin PF09726.4 gi|549455328|ref|YP_008604087.1| - 0.43 8.8 1.9 0.59 8.3 1.3 1.1 1 0 0 1 1 1 0 Transmembrane protein AATF-Che1 PF13339.1 gi|549455328|ref|YP_008604087.1| - 0.51 10.5 4.0 4.7 7.3 2.8 2.1 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF2802 PF10975.3 gi|549455328|ref|YP_008604087.1| - 0.52 10.1 7.8 5.9 6.7 0.4 3.9 3 1 1 4 4 4 0 Protein of unknown function (DUF2802) GvpK PF05121.7 gi|549455328|ref|YP_008604087.1| - 0.53 10.1 9.7 13 5.6 0.5 3.8 1 1 3 4 4 3 0 Gas vesicle protein K Cep57_MT_bd PF06657.8 gi|549455328|ref|YP_008604087.1| - 0.55 10.2 8.3 4.6 7.2 2.7 2.7 1 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF4407 PF14362.1 gi|549455328|ref|YP_008604087.1| - 0.57 9.0 3.9 0.67 8.8 1.2 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Lge1 PF11488.3 gi|549455328|ref|YP_008604087.1| - 0.58 10.3 3.6 2.5 8.3 2.3 2.2 1 1 0 1 1 1 0 Transcriptional regulatory protein LGE1 DASH_Spc34 PF08657.5 gi|549455328|ref|YP_008604087.1| - 0.59 9.7 6.4 1.3 8.6 1.5 2.2 1 1 0 2 2 2 0 DASH complex subunit Spc34 DUF3450 PF11932.3 gi|549455328|ref|YP_008604087.1| - 0.62 9.2 6.8 1.6 7.9 2.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) TMP_2 PF06791.8 gi|549455328|ref|YP_008604087.1| - 0.62 9.6 6.4 1.5 8.3 0.6 2.7 2 1 1 3 3 2 0 Prophage tail length tape measure protein SlyX PF04102.7 gi|549455328|ref|YP_008604087.1| - 0.7 10.3 10.6 6.2 7.2 3.2 3.5 1 1 1 3 3 3 0 SlyX MbeD_MobD PF04899.7 gi|549455328|ref|YP_008604087.1| - 0.82 9.6 5.7 21 5.1 1.3 3.0 2 1 1 3 3 2 0 MbeD/MobD like Med9 PF07544.8 gi|549455328|ref|YP_008604087.1| - 0.86 9.3 7.4 10 5.9 3.3 2.6 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Occludin_ELL PF07303.8 gi|549455328|ref|YP_008604087.1| - 0.95 10.2 4.5 67 4.3 0.1 3.4 1 1 3 4 4 4 0 Occludin homology domain OmpH PF03938.9 gi|549455328|ref|YP_008604087.1| - 0.99 9.3 4.1 1.7 8.5 2.8 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DivIC PF04977.10 gi|549455328|ref|YP_008604087.1| - 1.1 8.8 10.5 0.75 9.3 0.8 3.4 1 1 3 4 4 4 0 Septum formation initiator DivIVA PF05103.8 gi|549455328|ref|YP_008604087.1| - 1.2 9.2 7.4 2.5 8.1 1.0 3.2 2 1 1 3 3 2 0 DivIVA protein FadA PF09403.5 gi|549455328|ref|YP_008604087.1| - 1.2 9.2 7.3 3.6 7.6 0.1 2.2 1 1 1 2 2 2 0 Adhesion protein FadA HAP1_N PF04849.8 gi|549455328|ref|YP_008604087.1| - 1.2 7.9 7.2 3.6 6.4 5.0 1.6 1 1 0 1 1 1 0 HAP1 N-terminal conserved region DUF812 PF05667.6 gi|549455328|ref|YP_008604087.1| - 1.3 7.4 5.5 3.1 6.1 3.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Myosin_tail_1 PF01576.14 gi|549455328|ref|YP_008604087.1| - 1.8 6.2 9.8 3.7 5.1 3.1 1.6 1 1 0 1 1 1 0 Myosin tail Viral_P18 PF04521.8 gi|549455328|ref|YP_008604087.1| - 1.9 7.9 5.6 3.4 7.1 0.4 2.7 1 1 1 3 3 2 0 ssRNA positive strand viral 18kD cysteine rich protein GrpE PF01025.14 gi|549455328|ref|YP_008604087.1| - 2.3 7.7 4.2 32 4.0 0.0 2.4 1 1 0 2 2 2 0 GrpE Dor1 PF04124.7 gi|549455328|ref|YP_008604087.1| - 2.4 6.5 6.1 12 4.2 2.0 2.2 1 1 0 2 2 2 0 Dor1-like family Med4 PF10018.4 gi|549455328|ref|YP_008604087.1| - 3 7.1 6.1 25 4.1 1.8 2.3 1 1 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Cortex-I_coil PF09304.5 gi|549455328|ref|YP_008604087.1| - 4.2 7.4 10.8 13 5.8 5.6 2.4 1 1 1 2 2 2 0 Cortexillin I, coiled coil UPF0184 PF03670.8 gi|549455328|ref|YP_008604087.1| - 4.2 7.6 8.4 22 5.3 0.6 3.3 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0184) DUF4349 PF14257.1 gi|549455328|ref|YP_008604087.1| - 4.6 6.4 16.6 3 7.0 2.6 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4349) DUF2205 PF10224.4 gi|549455328|ref|YP_008604087.1| - 5.4 6.6 12.3 12 5.5 0.5 3.8 1 1 3 4 4 3 0 Predicted coiled-coil protein (DUF2205) Sas10_Utp3 PF04000.10 gi|549455328|ref|YP_008604087.1| - 6 7.1 5.3 13 6.0 0.7 3.1 2 2 1 3 3 3 0 Sas10/Utp3/C1D family FecCD PF01032.13 gi|549455329|ref|YP_008604088.1| - 5.4e-66 222.5 38.6 6.6e-66 222.2 26.8 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|549455329|ref|YP_008604088.1| - 0.0025 17.1 16.3 0.0041 16.4 11.3 1.3 1 0 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.22 gi|549455330|ref|YP_008604089.1| - 5.3e-26 91.5 0.0 6.6e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455330|ref|YP_008604089.1| - 3.9e-16 59.8 0.0 1.3e-08 35.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|549455330|ref|YP_008604089.1| - 5.9e-08 32.2 0.0 0.00025 20.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|549455330|ref|YP_008604089.1| - 0.0001 22.3 0.7 0.00089 19.2 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|549455330|ref|YP_008604089.1| - 0.00017 22.0 0.0 0.00023 21.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|549455330|ref|YP_008604089.1| - 0.0004 19.5 0.0 0.71 8.8 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|549455330|ref|YP_008604089.1| - 0.00063 19.2 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|549455330|ref|YP_008604089.1| - 0.002 17.8 0.6 0.006 16.3 0.1 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|549455330|ref|YP_008604089.1| - 0.0027 17.1 0.1 0.0045 16.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|549455330|ref|YP_008604089.1| - 0.0044 16.6 0.1 0.0076 15.9 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|549455330|ref|YP_008604089.1| - 0.0067 16.3 0.2 0.018 14.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|549455330|ref|YP_008604089.1| - 0.0089 16.1 0.0 0.019 15.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|549455330|ref|YP_008604089.1| - 0.0091 15.7 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|549455330|ref|YP_008604089.1| - 0.01 15.7 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|549455330|ref|YP_008604089.1| - 0.013 16.3 0.1 0.026 15.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|549455330|ref|YP_008604089.1| - 0.014 15.0 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|549455330|ref|YP_008604089.1| - 0.025 14.7 0.0 0.041 14.0 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|549455330|ref|YP_008604089.1| - 0.03 14.0 0.2 0.056 13.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|549455330|ref|YP_008604089.1| - 0.039 13.5 0.0 0.082 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|549455330|ref|YP_008604089.1| - 0.048 13.1 0.1 0.085 12.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF3584 PF12128.3 gi|549455330|ref|YP_008604089.1| - 0.051 10.9 0.1 0.065 10.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_18 PF13238.1 gi|549455330|ref|YP_008604089.1| - 0.062 13.6 0.0 0.075 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|549455330|ref|YP_008604089.1| - 0.071 12.5 0.1 0.2 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|549455330|ref|YP_008604089.1| - 0.077 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|549455330|ref|YP_008604089.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Thymidylate_kin PF02223.12 gi|549455330|ref|YP_008604089.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase Mg_chelatase PF01078.16 gi|549455330|ref|YP_008604089.1| - 0.13 11.4 0.1 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.1 gi|549455330|ref|YP_008604089.1| - 0.15 10.4 0.0 0.2 10.1 0.0 1.0 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|549455330|ref|YP_008604089.1| - 0.19 11.1 0.2 0.27 10.6 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AMMECR1 PF01871.12 gi|549455331|ref|YP_008604090.1| - 2.4e-51 173.2 0.0 3.3e-51 172.8 0.0 1.2 1 0 0 1 1 1 1 AMMECR1 DUF3628 PF12300.3 gi|549455331|ref|YP_008604090.1| - 0.041 13.9 2.3 0.077 13.0 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3628) Wyosine_form PF08608.7 gi|549455332|ref|YP_008604091.1| - 8.8e-19 67.3 0.0 1.6e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|549455332|ref|YP_008604091.1| - 2.4e-16 60.3 0.0 4.2e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Pyr_redox_2 PF07992.9 gi|549455333|ref|YP_008604092.1| - 8e-13 48.7 0.1 4.6e-10 39.7 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|549455333|ref|YP_008604092.1| - 0.0057 15.5 0.1 0.081 11.7 0.0 2.0 1 1 1 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|549455334|ref|YP_008604093.1| - 1.5e-16 60.8 0.0 1.8e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|549455334|ref|YP_008604093.1| - 2.4e-10 40.8 1.4 5.1e-07 29.9 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|549455334|ref|YP_008604093.1| - 9.3e-10 37.9 3.7 1.5e-06 27.3 0.2 2.2 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|549455334|ref|YP_008604093.1| - 2.5e-07 29.5 2.3 0.0019 16.7 0.0 2.4 2 1 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|549455334|ref|YP_008604093.1| - 0.00012 21.0 0.3 0.009 14.9 0.1 2.2 1 1 1 2 2 2 2 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|549455334|ref|YP_008604093.1| - 0.00064 19.5 1.1 0.36 10.5 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|549455334|ref|YP_008604093.1| - 0.00082 18.3 1.0 0.0061 15.4 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|549455334|ref|YP_008604093.1| - 0.001 18.2 1.5 0.0017 17.4 0.1 2.0 2 1 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|549455334|ref|YP_008604093.1| - 0.0058 15.7 0.1 0.031 13.3 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.7 gi|549455334|ref|YP_008604093.1| - 0.0079 15.1 0.1 0.043 12.7 0.0 1.9 1 1 1 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|549455334|ref|YP_008604093.1| - 0.021 14.8 0.2 0.073 13.1 0.1 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|549455334|ref|YP_008604093.1| - 0.046 12.7 0.7 0.11 11.5 0.5 1.7 1 1 0 1 1 1 0 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|549455334|ref|YP_008604093.1| - 0.16 10.8 0.1 2.5 6.9 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.9 gi|549455334|ref|YP_008604093.1| - 0.28 9.7 3.8 1.6 7.2 0.1 2.6 3 0 0 3 3 3 0 Tryptophan halogenase HTH_28 PF13518.1 gi|549455335|ref|YP_008604094.1| - 0.016 15.2 1.2 0.019 14.9 0.2 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|549455335|ref|YP_008604094.1| - 0.032 13.8 0.1 0.06 12.9 0.1 1.4 1 0 0 1 1 1 0 HTH domain HAMP PF00672.20 gi|549455335|ref|YP_008604094.1| - 0.06 13.5 1.1 0.16 12.1 0.7 1.8 1 1 0 1 1 1 0 HAMP domain MarR_2 PF12802.2 gi|549455335|ref|YP_008604094.1| - 0.12 12.0 0.7 0.2 11.3 0.1 1.7 2 0 0 2 2 2 0 MarR family HisG_C PF08029.6 gi|549455335|ref|YP_008604094.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 HisG, C-terminal domain ATP-grasp_2 PF08442.5 gi|549455337|ref|YP_008604096.1| - 1.4e-50 171.5 0.0 1.9e-50 171.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|549455337|ref|YP_008604096.1| - 1.5e-13 50.6 0.0 2.9e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|549455337|ref|YP_008604096.1| - 6.9e-06 25.4 0.3 0.0018 17.5 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|549455337|ref|YP_008604096.1| - 0.0053 16.3 0.0 0.009 15.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CoA_binding PF02629.14 gi|549455338|ref|YP_008604097.1| - 4.2e-32 110.5 3.0 4.9e-32 110.3 0.6 2.0 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|549455338|ref|YP_008604097.1| - 4e-19 68.7 0.1 6.6e-19 68.0 0.1 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|549455338|ref|YP_008604097.1| - 5e-15 55.3 0.1 3.2e-14 52.7 0.0 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|549455338|ref|YP_008604097.1| - 4.6e-12 46.1 0.9 1e-11 45.0 0.1 1.9 2 1 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|549455338|ref|YP_008604097.1| - 0.00039 20.9 0.2 0.0012 19.3 0.1 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold ResIII PF04851.10 gi|549455339|ref|YP_008604098.1| - 1.2e-19 70.8 0.0 4.1e-19 69.1 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|549455339|ref|YP_008604098.1| - 2.3e-16 59.4 0.1 5e-16 58.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|549455339|ref|YP_008604098.1| - 2.6e-09 36.7 0.0 6.9e-09 35.4 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|549455339|ref|YP_008604098.1| - 7.1e-07 28.3 0.0 1.2e-05 24.3 0.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|549455339|ref|YP_008604098.1| - 0.00076 19.1 4.5 0.24 11.1 0.2 3.4 3 1 0 3 3 3 2 Part of AAA domain AAA_22 PF13401.1 gi|549455339|ref|YP_008604098.1| - 0.0019 18.3 0.0 0.017 15.2 0.0 2.6 3 1 0 3 3 3 1 AAA domain Pribosyltran PF00156.22 gi|549455341|ref|YP_008604100.1| - 5.8e-14 51.8 0.2 1.3e-13 50.7 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain HTH_IclR PF09339.5 gi|549455341|ref|YP_008604100.1| - 0.0016 18.0 0.0 0.027 14.0 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_3 PF01381.17 gi|549455341|ref|YP_008604100.1| - 0.012 15.4 0.1 0.029 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix UPRTase PF14681.1 gi|549455341|ref|YP_008604100.1| - 0.012 14.7 0.0 0.024 13.8 0.0 1.4 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_24 PF13412.1 gi|549455341|ref|YP_008604100.1| - 0.018 14.4 0.0 0.034 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Lambda_CIII PF02061.11 gi|549455341|ref|YP_008604100.1| - 0.11 12.5 0.1 0.57 10.1 0.0 2.1 2 0 0 2 2 2 0 Lambda Phage CIII SRP54 PF00448.17 gi|549455342|ref|YP_008604101.1| - 4.6e-73 244.8 0.0 5.6e-73 244.5 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|549455342|ref|YP_008604101.1| - 2.7e-09 36.9 0.7 5.4e-09 36.0 0.2 1.7 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.1 gi|549455342|ref|YP_008604101.1| - 1.6e-05 24.6 0.4 3e-05 23.6 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|549455342|ref|YP_008604101.1| - 0.00011 22.3 0.0 0.00023 21.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|549455342|ref|YP_008604101.1| - 0.00029 20.3 0.1 0.00043 19.7 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|549455342|ref|YP_008604101.1| - 0.00037 20.3 0.0 0.00073 19.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|549455342|ref|YP_008604101.1| - 0.00039 20.1 0.1 0.00086 19.0 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|549455342|ref|YP_008604101.1| - 0.00044 19.9 3.9 0.0018 17.9 1.7 2.7 1 1 1 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|549455342|ref|YP_008604101.1| - 0.0039 17.2 1.4 0.011 15.7 0.1 2.4 1 1 1 2 2 2 1 AAA ATPase domain KaiC PF06745.8 gi|549455342|ref|YP_008604101.1| - 0.0061 15.7 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 KaiC ArgK PF03308.11 gi|549455342|ref|YP_008604101.1| - 0.0085 14.8 3.9 0.011 14.5 0.7 2.3 2 1 0 2 2 2 1 ArgK protein NTPase_1 PF03266.10 gi|549455342|ref|YP_008604101.1| - 0.011 15.5 0.4 0.7 9.5 0.1 2.5 2 0 0 2 2 2 0 NTPase APS_kinase PF01583.15 gi|549455342|ref|YP_008604101.1| - 0.016 14.8 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA PF00004.24 gi|549455342|ref|YP_008604101.1| - 0.019 15.1 0.1 0.039 14.1 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|549455342|ref|YP_008604101.1| - 0.031 14.2 0.1 0.13 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain CbiA PF01656.18 gi|549455342|ref|YP_008604101.1| - 0.038 13.3 3.5 0.57 9.5 2.4 2.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain TPP_enzyme_M PF00205.17 gi|549455342|ref|YP_008604101.1| - 0.07 12.8 1.0 0.15 11.8 0.4 1.9 2 1 0 2 2 1 0 Thiamine pyrophosphate enzyme, central domain AAA_10 PF12846.2 gi|549455342|ref|YP_008604101.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain DUF2855 PF11017.3 gi|549455342|ref|YP_008604101.1| - 0.13 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) AAA_11 PF13086.1 gi|549455342|ref|YP_008604101.1| - 0.17 11.4 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain Prefoldin PF02996.12 gi|549455343|ref|YP_008604102.1| - 8.9e-23 80.2 1.8 1.2e-22 79.8 1.2 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|549455343|ref|YP_008604102.1| - 0.00018 21.1 8.1 0.018 14.7 0.7 2.1 2 0 0 2 2 2 2 Prefoldin subunit vATP-synt_E PF01991.13 gi|549455343|ref|YP_008604102.1| - 0.001 18.3 1.4 0.001 18.3 1.0 1.9 2 0 0 2 2 2 1 ATP synthase (E/31 kDa) subunit Fib_alpha PF08702.5 gi|549455343|ref|YP_008604102.1| - 0.0051 16.9 2.3 0.029 14.4 0.4 2.0 2 0 0 2 2 2 1 Fibrinogen alpha/beta chain family Nsp1_C PF05064.8 gi|549455343|ref|YP_008604102.1| - 0.0058 16.2 3.4 0.14 11.8 0.1 2.2 2 0 0 2 2 2 1 Nsp1-like C-terminal region CENP-F_leu_zip PF10473.4 gi|549455343|ref|YP_008604102.1| - 0.0067 16.2 5.5 0.42 10.4 0.1 2.1 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Syntaxin PF00804.20 gi|549455343|ref|YP_008604102.1| - 0.0074 16.4 3.4 0.25 11.5 0.9 2.1 2 0 0 2 2 2 1 Syntaxin DASH_Dam1 PF08653.5 gi|549455343|ref|YP_008604102.1| - 0.014 15.1 2.2 2.5 7.9 0.0 2.2 2 0 0 2 2 2 0 DASH complex subunit Dam1 Sigma70_r3 PF04539.11 gi|549455343|ref|YP_008604102.1| - 0.023 14.5 0.8 0.11 12.4 0.1 2.3 2 1 1 3 3 2 0 Sigma-70 region 3 DivIC PF04977.10 gi|549455343|ref|YP_008604102.1| - 0.049 13.1 4.4 2.5 7.6 0.8 2.3 2 0 0 2 2 2 0 Septum formation initiator Spc24 PF08286.6 gi|549455343|ref|YP_008604102.1| - 0.052 13.2 4.6 1.7 8.3 1.3 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF4201 PF13870.1 gi|549455343|ref|YP_008604102.1| - 0.059 12.8 3.4 3.8 6.9 0.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) DASH_Dad3 PF08656.5 gi|549455343|ref|YP_008604102.1| - 0.061 13.0 3.3 0.96 9.1 1.3 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad3 V-SNARE PF05008.10 gi|549455343|ref|YP_008604102.1| - 0.064 13.4 1.8 0.064 13.4 1.3 2.6 2 1 1 3 3 2 0 Vesicle transport v-SNARE protein N-terminus Cortex-I_coil PF09304.5 gi|549455343|ref|YP_008604102.1| - 0.066 13.2 9.7 0.2 11.6 2.5 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil HHH_6 PF14579.1 gi|549455343|ref|YP_008604102.1| - 0.095 12.7 0.2 0.17 11.9 0.1 1.4 1 1 0 1 1 1 0 Helix-hairpin-helix motif EIAV_Rev PF11129.3 gi|549455343|ref|YP_008604102.1| - 0.096 12.6 0.6 0.27 11.2 0.1 1.8 2 0 0 2 2 2 0 Rev protein of equine infectious anaemia virus MtrB PF05440.7 gi|549455343|ref|YP_008604102.1| - 0.099 12.6 0.1 2.2 8.3 0.0 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF607 PF04678.8 gi|549455343|ref|YP_008604102.1| - 0.1 12.5 1.4 0.52 10.2 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF607 Med9 PF07544.8 gi|549455343|ref|YP_008604102.1| - 0.11 12.2 4.5 0.48 10.1 0.2 2.4 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 THOC7 PF05615.8 gi|549455343|ref|YP_008604102.1| - 0.12 12.6 5.1 1.5 9.1 0.2 2.2 2 0 0 2 2 2 0 Tho complex subunit 7 CCDC-167 PF15188.1 gi|549455343|ref|YP_008604102.1| - 0.18 11.7 1.4 5.7 6.9 0.3 2.2 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 DivIVA PF05103.8 gi|549455343|ref|YP_008604102.1| - 0.21 11.6 7.8 0.96 9.5 1.7 2.1 2 0 0 2 2 2 0 DivIVA protein GAS PF13851.1 gi|549455343|ref|YP_008604102.1| - 0.23 10.6 8.3 0.46 9.6 2.6 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF4200 PF13863.1 gi|549455343|ref|YP_008604102.1| - 0.28 11.1 5.2 3.5 7.5 1.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Snapin_Pallidin PF14712.1 gi|549455343|ref|YP_008604102.1| - 0.28 11.5 7.3 2.2 8.6 1.5 2.2 2 0 0 2 2 2 0 Snapin/Pallidin Syntaxin-6_N PF09177.6 gi|549455343|ref|YP_008604102.1| - 0.28 11.5 1.8 7.7 7.0 0.2 2.3 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Baculo_PEP_C PF04513.7 gi|549455343|ref|YP_008604102.1| - 0.3 10.8 4.1 4.9 6.9 0.8 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DinB_2 PF12867.2 gi|549455343|ref|YP_008604102.1| - 0.32 11.3 3.8 21 5.4 0.1 2.7 1 1 2 3 3 3 0 DinB superfamily Glutaredoxin2_C PF04399.8 gi|549455343|ref|YP_008604102.1| - 0.33 10.5 2.7 1 8.9 0.5 2.0 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain NPV_P10 PF05531.7 gi|549455343|ref|YP_008604102.1| - 0.35 11.1 2.5 8.4 6.7 0.1 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein PilJ PF13675.1 gi|549455343|ref|YP_008604102.1| - 0.58 10.4 5.4 10 6.4 0.6 2.6 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Snf7 PF03357.16 gi|549455343|ref|YP_008604102.1| - 0.6 9.4 8.0 4.1 6.7 0.1 2.1 2 0 0 2 2 2 0 Snf7 DUF342 PF03961.8 gi|549455343|ref|YP_008604102.1| - 0.63 8.3 6.6 1.8 6.9 1.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Cep57_MT_bd PF06657.8 gi|549455343|ref|YP_008604102.1| - 0.73 9.8 9.4 2.6 8.0 0.6 2.3 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 bZIP_Maf PF03131.12 gi|549455343|ref|YP_008604102.1| - 0.82 9.9 4.2 0.42 10.9 0.6 2.0 2 0 0 2 2 2 0 bZIP Maf transcription factor CENP-K PF11802.3 gi|549455343|ref|YP_008604102.1| - 0.83 8.8 4.2 1.5 7.9 2.9 1.6 1 1 0 1 1 1 0 Centromere-associated protein K Uds1 PF15456.1 gi|549455343|ref|YP_008604102.1| - 1 9.3 6.8 0.66 9.9 1.3 2.1 2 0 0 2 2 2 0 Up-regulated During Septation Sigma70_ner PF04546.8 gi|549455343|ref|YP_008604102.1| - 1 8.9 5.6 9 5.8 0.1 2.1 2 0 0 2 2 2 0 Sigma-70, non-essential region DUF4140 PF13600.1 gi|549455343|ref|YP_008604102.1| - 1.2 9.6 7.3 8.2 6.9 0.5 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) WXG100 PF06013.7 gi|549455343|ref|YP_008604102.1| - 1.3 9.1 9.1 4.8 7.2 0.6 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG PspA_IM30 PF04012.7 gi|549455343|ref|YP_008604102.1| - 1.4 8.1 14.2 0.69 9.2 0.4 2.1 2 0 0 2 2 2 0 PspA/IM30 family NTR2 PF15458.1 gi|549455343|ref|YP_008604102.1| - 1.8 7.7 8.8 1.4 8.1 0.8 2.1 2 0 0 2 2 2 0 Nineteen complex-related protein 2 HrpA_pilin PF09589.5 gi|549455343|ref|YP_008604102.1| - 2.2 8.7 4.6 3.9 7.9 3.2 1.7 1 1 0 1 1 1 0 HrpA pilus formation protein APG6 PF04111.7 gi|549455343|ref|YP_008604102.1| - 2.7 6.9 7.1 0.69 8.9 1.3 1.9 2 0 0 2 2 2 0 Autophagy protein Apg6 MerR-DNA-bind PF09278.6 gi|549455343|ref|YP_008604102.1| - 4.1 7.8 11.2 0.33 11.3 1.1 2.7 2 1 0 2 2 2 0 MerR, DNA binding FlxA PF14282.1 gi|549455343|ref|YP_008604102.1| - 4.4 7.2 16.6 0.1 12.5 1.2 2.4 2 1 0 2 2 2 0 FlxA-like protein SlyX PF04102.7 gi|549455343|ref|YP_008604102.1| - 6.9 7.1 7.8 4.7 7.6 0.3 2.4 2 0 0 2 2 2 0 SlyX GrpE PF01025.14 gi|549455343|ref|YP_008604102.1| - 7.6 6.0 7.7 5.1 6.6 2.1 2.0 2 0 0 2 2 2 0 GrpE Seryl_tRNA_N PF02403.17 gi|549455343|ref|YP_008604102.1| - 7.6 6.5 8.6 3.5 7.6 2.0 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4404 PF14357.1 gi|549455343|ref|YP_008604102.1| - 8.3 6.9 8.3 6.4 7.2 1.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4404) Ribosomal_L18ae PF01775.12 gi|549455344|ref|YP_008604103.1| - 3.5e-11 43.0 0.4 8.2e-11 41.8 0.3 1.6 1 1 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|549455345|ref|YP_008604104.1| - 3.3e-68 228.6 1.2 3.9e-68 228.4 0.9 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|549455346|ref|YP_008604105.1| - 3.9e-24 84.1 2.5 5.1e-24 83.7 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|549455347|ref|YP_008604106.1| - 9.6e-20 69.7 10.2 1.2e-19 69.5 7.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.15 gi|549455348|ref|YP_008604107.1| - 1.5e-27 95.6 13.1 1.7e-27 95.4 9.1 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.6 gi|549455348|ref|YP_008604107.1| - 2.4e-05 23.5 8.3 2.7e-05 23.3 5.7 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 Taq-exonuc PF09281.5 gi|549455348|ref|YP_008604107.1| - 0.015 15.4 0.4 0.018 15.1 0.3 1.1 1 0 0 1 1 1 0 Taq polymerase, exonuclease CAF-1_p150 PF11600.3 gi|549455348|ref|YP_008604107.1| - 0.59 9.4 8.4 0.75 9.1 5.8 1.1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal DUF4192 PF13830.1 gi|549455348|ref|YP_008604107.1| - 2.7 7.5 11.0 3.1 7.3 7.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) Ribosomal_S19e PF01090.14 gi|549455349|ref|YP_008604108.1| - 3.9e-54 181.8 0.0 4.4e-54 181.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e MarR_2 PF12802.2 gi|549455349|ref|YP_008604108.1| - 0.11 12.1 0.4 0.63 9.7 0.1 2.2 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|549455349|ref|YP_008604108.1| - 0.14 12.2 0.1 0.32 11.1 0.1 1.7 1 1 0 1 1 1 0 Transcriptional regulator CRS1_YhbY PF01985.16 gi|549455350|ref|YP_008604109.1| - 4.7e-16 58.5 2.0 5.9e-16 58.2 1.4 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.11 gi|549455351|ref|YP_008604110.1| - 4e-16 58.6 0.0 5.4e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|549455351|ref|YP_008604110.1| - 0.0076 16.0 0.2 0.02 14.7 0.1 1.7 1 0 0 1 1 1 1 Putative zinc ribbon domain GFA PF04828.9 gi|549455351|ref|YP_008604110.1| - 0.038 13.9 0.6 0.079 12.9 0.0 1.7 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|549455351|ref|YP_008604110.1| - 0.08 12.1 0.3 11 5.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_A_M PF01068.16 gi|549455352|ref|YP_008604111.1| - 4e-58 196.1 0.1 9e-58 194.9 0.0 1.6 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|549455352|ref|YP_008604111.1| - 6.8e-50 169.3 0.0 1.2e-49 168.5 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|549455352|ref|YP_008604111.1| - 7.5e-27 93.5 0.0 1.7e-26 92.4 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region FlpD PF02662.11 gi|549455352|ref|YP_008604111.1| - 0.085 12.5 0.1 0.58 9.8 0.0 2.2 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Nol1_Nop2_Fmu PF01189.12 gi|549455353|ref|YP_008604112.1| - 2.5e-31 109.0 0.0 6.3e-31 107.7 0.0 1.6 2 0 0 2 2 2 1 NOL1/NOP2/sun family PUA PF01472.15 gi|549455353|ref|YP_008604112.1| - 4.9e-17 61.4 1.4 9.5e-17 60.5 1.0 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_26 PF13659.1 gi|549455353|ref|YP_008604112.1| - 2.7e-10 40.3 0.1 5.1e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|549455353|ref|YP_008604112.1| - 0.001 18.6 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|549455353|ref|YP_008604112.1| - 0.0045 17.7 0.0 0.066 14.0 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|549455353|ref|YP_008604112.1| - 0.01 16.3 0.0 0.017 15.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|549455353|ref|YP_008604112.1| - 0.032 13.6 0.0 0.052 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|549455353|ref|YP_008604112.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PIN PF01850.16 gi|549455354|ref|YP_008604113.1| - 9.6e-05 22.6 0.1 0.00017 21.9 0.1 1.4 1 1 0 1 1 1 1 PIN domain GHMP_kinases_C PF08544.8 gi|549455354|ref|YP_008604113.1| - 0.0026 17.9 0.0 0.0047 17.0 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal UPF0278 PF08745.6 gi|549455354|ref|YP_008604113.1| - 0.085 12.0 0.4 0.13 11.5 0.3 1.4 1 0 0 1 1 1 0 UPF0278 family NAD_kinase PF01513.16 gi|549455355|ref|YP_008604114.1| - 4.5e-39 133.9 0.3 2e-38 131.8 0.2 1.8 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|549455355|ref|YP_008604114.1| - 0.0036 16.7 0.0 0.0074 15.7 0.0 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain PS_pyruv_trans PF04230.8 gi|549455355|ref|YP_008604114.1| - 0.091 12.4 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase Met_10 PF02475.11 gi|549455356|ref|YP_008604115.1| - 1.3e-41 142.4 0.0 1.6e-41 142.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|549455356|ref|YP_008604115.1| - 8.5e-11 41.9 0.3 1.6e-10 41.0 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|549455356|ref|YP_008604115.1| - 1.9e-05 25.1 0.0 3.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|549455356|ref|YP_008604115.1| - 3.9e-05 22.9 0.0 6.3e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|549455356|ref|YP_008604115.1| - 0.0002 20.9 0.0 0.00032 20.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|549455356|ref|YP_008604115.1| - 0.00035 19.9 0.0 0.00057 19.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|549455356|ref|YP_008604115.1| - 0.0016 17.8 0.0 0.0026 17.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|549455356|ref|YP_008604115.1| - 0.0085 15.6 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|549455356|ref|YP_008604115.1| - 0.011 16.1 0.0 0.021 15.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|549455356|ref|YP_008604115.1| - 0.019 14.5 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltrans_SAM PF10672.4 gi|549455356|ref|YP_008604115.1| - 0.041 12.7 0.0 0.059 12.2 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase DNA_methylase PF00145.12 gi|549455356|ref|YP_008604115.1| - 0.059 12.4 0.0 0.08 12.0 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase FBPase_3 PF01950.11 gi|549455357|ref|YP_008604116.1| - 2.1e-189 629.0 0.0 2.5e-189 628.8 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Peptidase_M24 PF00557.19 gi|549455359|ref|YP_008604118.1| - 5.6e-40 137.1 0.2 6.7e-40 136.8 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Lactamase_B_3 PF13483.1 gi|549455360|ref|YP_008604119.1| - 2.3e-25 89.1 0.1 8.6e-25 87.3 0.1 1.9 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|549455360|ref|YP_008604119.1| - 8.9e-19 67.7 0.0 1.1e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|549455360|ref|YP_008604119.1| - 8.5e-18 64.7 2.2 1e-17 64.4 1.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Inhibitor_I78 PF11720.3 gi|549455360|ref|YP_008604119.1| - 0.021 14.5 0.0 1.6 8.4 0.0 2.6 2 0 0 2 2 2 0 Peptidase inhibitor I78 family ABC_tran PF00005.22 gi|549455361|ref|YP_008604120.1| - 8.6e-40 136.2 0.0 1.6e-18 67.3 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|549455361|ref|YP_008604120.1| - 1.3e-13 51.5 0.3 0.035 14.0 0.0 4.1 2 2 1 3 3 3 3 AAA domain RLI PF04068.10 gi|549455361|ref|YP_008604120.1| - 3.6e-13 48.8 1.8 3.6e-13 48.8 1.3 1.9 2 0 0 2 2 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|549455361|ref|YP_008604120.1| - 2.1e-11 43.4 1.1 0.0056 15.9 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain Fer4_6 PF12837.2 gi|549455361|ref|YP_008604120.1| - 3.9e-09 35.9 14.5 3e-06 26.8 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|549455361|ref|YP_008604120.1| - 9.9e-08 31.2 5.7 9.9e-08 31.2 4.0 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain AAA PF00004.24 gi|549455361|ref|YP_008604120.1| - 2.9e-06 27.5 0.2 0.04 14.1 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|549455361|ref|YP_008604120.1| - 3e-06 27.0 0.1 0.057 13.3 0.0 2.9 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit Fer4_2 PF12797.2 gi|549455361|ref|YP_008604120.1| - 4e-06 26.4 14.2 4.3e-05 23.1 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|549455361|ref|YP_008604120.1| - 4.6e-06 26.3 20.9 0.00032 20.4 1.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|549455361|ref|YP_008604120.1| - 9.9e-06 25.3 8.5 1.8e-05 24.4 5.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|549455361|ref|YP_008604120.1| - 1e-05 25.7 21.8 0.00031 21.0 1.3 2.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain AAA_17 PF13207.1 gi|549455361|ref|YP_008604120.1| - 1.5e-05 25.8 5.8 0.063 14.0 0.4 3.2 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|549455361|ref|YP_008604120.1| - 2.1e-05 23.9 0.3 0.26 10.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain MobB PF03205.9 gi|549455361|ref|YP_008604120.1| - 5e-05 23.0 0.3 0.21 11.3 0.0 3.1 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B Fer4_16 PF13484.1 gi|549455361|ref|YP_008604120.1| - 0.00014 22.5 2.4 0.014 16.1 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain UPF0079 PF02367.12 gi|549455361|ref|YP_008604120.1| - 0.00015 21.4 0.9 0.1 12.2 0.1 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|549455361|ref|YP_008604120.1| - 0.00018 21.2 0.6 0.15 11.7 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_25 PF13481.1 gi|549455361|ref|YP_008604120.1| - 0.00048 19.5 3.0 0.13 11.6 0.1 3.4 4 0 0 4 4 4 1 AAA domain AAA_30 PF13604.1 gi|549455361|ref|YP_008604120.1| - 0.00092 18.8 0.2 0.77 9.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain Fer4_9 PF13187.1 gi|549455361|ref|YP_008604120.1| - 0.001 19.2 8.5 0.0024 18.0 5.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|549455361|ref|YP_008604120.1| - 0.001 19.1 2.6 1.6 8.8 0.2 3.5 3 2 0 3 3 2 2 AAA domain NTPase_1 PF03266.10 gi|549455361|ref|YP_008604120.1| - 0.0011 18.6 1.8 0.11 12.1 0.1 2.7 2 0 0 2 2 2 1 NTPase AAA_33 PF13671.1 gi|549455361|ref|YP_008604120.1| - 0.0011 18.8 0.1 1.1 9.0 0.0 3.4 2 1 0 2 2 2 1 AAA domain Miro PF08477.8 gi|549455361|ref|YP_008604120.1| - 0.0014 19.0 0.0 0.81 10.1 0.0 2.6 2 0 0 2 2 2 1 Miro-like protein Fer4_3 PF12798.2 gi|549455361|ref|YP_008604120.1| - 0.0034 17.8 5.2 0.0034 17.8 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain DUF258 PF03193.11 gi|549455361|ref|YP_008604120.1| - 0.0038 16.4 0.1 1.9 7.6 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|549455361|ref|YP_008604120.1| - 0.0039 16.6 2.5 0.59 9.5 0.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|549455361|ref|YP_008604120.1| - 0.0042 16.9 0.0 0.39 10.6 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|549455361|ref|YP_008604120.1| - 0.0043 17.3 2.0 1.2 9.4 0.7 2.8 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|549455361|ref|YP_008604120.1| - 0.0045 17.3 0.9 3.8 7.7 0.6 2.2 2 0 0 2 2 2 0 AAA domain Fer4_8 PF13183.1 gi|549455361|ref|YP_008604120.1| - 0.0046 16.9 4.3 0.012 15.6 3.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain RNA_helicase PF00910.17 gi|549455361|ref|YP_008604120.1| - 0.0059 16.7 0.0 1.6 8.9 0.0 2.3 2 0 0 2 2 2 1 RNA helicase Thymidylate_kin PF02223.12 gi|549455361|ref|YP_008604120.1| - 0.0061 15.9 0.0 3 7.1 0.0 2.7 2 0 0 2 2 2 0 Thymidylate kinase Fer4_4 PF12800.2 gi|549455361|ref|YP_008604120.1| - 0.0073 16.5 3.0 0.0073 16.5 2.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_28 PF13521.1 gi|549455361|ref|YP_008604120.1| - 0.0094 15.9 0.3 5.1 7.0 0.0 2.8 3 0 0 3 3 3 0 AAA domain PRK PF00485.13 gi|549455361|ref|YP_008604120.1| - 0.013 15.1 0.0 0.12 11.9 0.0 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.1 gi|549455361|ref|YP_008604120.1| - 0.024 14.3 4.3 1.7 8.4 0.1 3.6 3 0 0 3 3 3 0 Part of AAA domain AAA_16 PF13191.1 gi|549455361|ref|YP_008604120.1| - 0.032 14.2 6.8 0.41 10.6 0.1 3.0 3 2 0 3 3 2 0 AAA ATPase domain AAA_5 PF07728.9 gi|549455361|ref|YP_008604120.1| - 0.032 13.9 1.2 7.2 6.3 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|549455361|ref|YP_008604120.1| - 0.049 13.3 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase Fer4_11 PF13247.1 gi|549455361|ref|YP_008604120.1| - 0.064 13.1 3.1 0.11 12.3 2.1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_24 PF13479.1 gi|549455361|ref|YP_008604120.1| - 0.069 12.7 2.6 0.7 9.4 0.3 2.3 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|549455361|ref|YP_008604120.1| - 0.099 11.5 0.0 4.4 6.1 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein Rad17 PF03215.10 gi|549455361|ref|YP_008604120.1| - 0.13 10.9 0.0 11 4.5 0.1 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein NB-ARC PF00931.17 gi|549455361|ref|YP_008604120.1| - 0.19 10.5 3.0 5.9 5.6 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain Fer4_17 PF13534.1 gi|549455361|ref|YP_008604120.1| - 0.22 11.8 7.6 0.16 12.3 1.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain ArgK PF03308.11 gi|549455361|ref|YP_008604120.1| - 0.23 10.2 2.6 5.6 5.6 0.4 2.3 2 0 0 2 2 2 0 ArgK protein Fer4_15 PF13459.1 gi|549455361|ref|YP_008604120.1| - 0.37 11.4 8.3 0.08 13.5 1.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain KaiC PF06745.8 gi|549455361|ref|YP_008604120.1| - 0.72 8.9 2.5 6.5 5.8 0.2 2.6 3 0 0 3 3 3 0 KaiC Fer4_18 PF13746.1 gi|549455361|ref|YP_008604120.1| - 2.4 8.6 10.6 0.49 10.8 2.5 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain AFP PF02420.10 gi|549455361|ref|YP_008604120.1| - 2.7 8.4 4.2 5.4 7.4 2.9 1.5 1 0 0 1 1 1 0 Insect antifreeze protein repeat DUF1512 PF07431.7 gi|549455362|ref|YP_008604121.1| - 1e-159 531.0 5.3 1.2e-159 530.8 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) DUF2100 PF09873.4 gi|549455362|ref|YP_008604121.1| - 0.044 13.2 0.7 0.11 11.9 0.3 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2100) tRNA-synt_1g PF09334.6 gi|549455364|ref|YP_008604123.1| - 4.7e-150 499.6 0.0 5.6e-150 499.3 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|549455364|ref|YP_008604123.1| - 9.8e-15 53.5 0.0 5.1e-08 31.4 0.0 3.6 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|549455364|ref|YP_008604123.1| - 1.5e-09 37.7 0.0 2.7e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|549455364|ref|YP_008604123.1| - 0.0041 16.3 0.0 0.15 11.1 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|549455364|ref|YP_008604123.1| - 0.035 13.9 5.2 0.043 13.6 3.0 1.6 1 1 1 2 2 2 0 Double zinc ribbon TerY-C PF15616.1 gi|549455364|ref|YP_008604123.1| - 0.059 13.2 0.4 0.11 12.4 0.3 1.5 1 0 0 1 1 1 0 TerY-C metal binding domain RNA_POL_M_15KD PF02150.11 gi|549455364|ref|YP_008604123.1| - 3.5 7.4 7.7 3.8 7.2 1.6 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_S24e PF01282.14 gi|549455365|ref|YP_008604124.1| - 3.5e-19 68.3 0.0 4.3e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DNase-RNase PF02577.9 gi|549455365|ref|YP_008604124.1| - 0.076 12.2 0.0 0.086 12.0 0.0 1.2 1 0 0 1 1 1 0 Bifunctional nuclease Ribosomal_S27 PF01599.14 gi|549455366|ref|YP_008604125.1| - 3e-09 36.5 3.6 4.4e-09 36.0 2.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|549455366|ref|YP_008604125.1| - 6.5e-05 22.6 3.4 8.5e-05 22.2 2.4 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|549455366|ref|YP_008604125.1| - 0.00029 20.4 0.6 0.00033 20.2 0.4 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|549455366|ref|YP_008604125.1| - 0.0083 15.9 0.4 0.011 15.4 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon GFA PF04828.9 gi|549455366|ref|YP_008604125.1| - 0.012 15.5 1.8 1.3 9.0 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.11 gi|549455366|ref|YP_008604125.1| - 0.013 15.1 0.2 0.028 14.1 0.1 1.5 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|549455366|ref|YP_008604125.1| - 0.015 15.2 1.0 0.025 14.4 0.7 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF2082 PF09855.4 gi|549455366|ref|YP_008604125.1| - 0.025 14.4 3.3 0.14 11.9 0.3 2.3 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|549455366|ref|YP_008604125.1| - 0.028 13.6 2.2 0.93 8.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|549455366|ref|YP_008604125.1| - 0.03 13.8 5.2 0.16 11.5 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-Sec23_Sec24 PF04810.10 gi|549455366|ref|YP_008604125.1| - 0.031 13.8 0.9 0.05 13.1 0.6 1.3 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger Auto_anti-p27 PF06677.7 gi|549455366|ref|YP_008604125.1| - 0.064 13.0 1.6 1.4 8.7 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ISL3 PF14690.1 gi|549455366|ref|YP_008604125.1| - 0.073 13.1 7.5 0.13 12.3 0.5 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.14 gi|549455366|ref|YP_008604125.1| - 0.092 12.2 1.4 1.9 8.0 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Rubredoxin PF00301.15 gi|549455366|ref|YP_008604125.1| - 0.11 12.3 2.2 4.8 7.1 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin RNHCP PF12647.2 gi|549455366|ref|YP_008604125.1| - 0.11 12.2 1.4 0.14 11.9 1.0 1.2 1 0 0 1 1 1 0 RNHCP domain A2L_zn_ribbon PF08792.5 gi|549455366|ref|YP_008604125.1| - 0.12 11.9 0.4 4.9 6.7 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|549455366|ref|YP_008604125.1| - 0.16 11.7 3.5 0.7 9.6 2.4 1.9 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|549455366|ref|YP_008604125.1| - 0.16 11.4 3.3 2.4 7.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|549455366|ref|YP_008604125.1| - 0.28 10.9 0.1 0.28 10.9 0.1 2.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RanBP PF00641.13 gi|549455366|ref|YP_008604125.1| - 0.31 10.1 3.2 0.92 8.6 0.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Ribosomal_L37e PF01907.14 gi|549455366|ref|YP_008604125.1| - 0.44 10.3 4.4 0.77 9.5 3.0 1.5 1 1 0 1 1 1 0 Ribosomal protein L37e TFIIS_C PF01096.13 gi|549455366|ref|YP_008604125.1| - 0.56 9.8 2.8 9.8 5.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-tcix PF14952.1 gi|549455366|ref|YP_008604125.1| - 0.6 9.4 4.0 0.62 9.4 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding ADK_lid PF05191.9 gi|549455366|ref|YP_008604125.1| - 0.63 9.7 3.4 2 8.1 2.4 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.7 gi|549455366|ref|YP_008604125.1| - 0.68 9.2 4.3 2.3 7.5 0.3 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.1 gi|549455366|ref|YP_008604125.1| - 0.78 9.2 4.3 7.4 6.1 0.4 1.9 1 1 1 2 2 2 0 Transposase zinc-binding domain zf-TFIIB PF13453.1 gi|549455366|ref|YP_008604125.1| - 0.89 8.7 3.6 3.2 7.0 2.5 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn_ribbon_recom PF13408.1 gi|549455366|ref|YP_008604125.1| - 1 9.6 6.3 4.7 7.5 4.4 2.0 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.5 gi|549455366|ref|YP_008604125.1| - 2.6 8.0 5.7 4.8 7.2 0.3 2.2 1 1 0 2 2 2 0 Zinc ribbon domain Peptidase_M22 PF00814.20 gi|549455367|ref|YP_008604126.1| - 4.6e-69 232.9 0.1 5.5e-69 232.6 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.18 gi|549455368|ref|YP_008604127.1| - 4.6e-08 33.0 1.6 0.00018 21.3 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|549455368|ref|YP_008604127.1| - 1.2e-06 27.9 0.0 1.6e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 RIO1 family WaaY PF06176.6 gi|549455368|ref|YP_008604127.1| - 0.0011 18.2 0.0 0.0014 17.8 0.0 1.1 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.9 gi|549455368|ref|YP_008604127.1| - 0.014 14.4 0.0 0.058 12.4 0.0 1.8 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|549455368|ref|YP_008604127.1| - 0.016 14.3 0.0 0.021 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain Ham1p_like PF01725.11 gi|549455369|ref|YP_008604128.1| - 5.1e-49 166.2 0.0 5.7e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Ribosomal_S13_N PF08069.7 gi|549455370|ref|YP_008604129.1| - 6.4e-25 86.7 0.0 1.8e-24 85.3 0.0 1.8 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|549455370|ref|YP_008604129.1| - 3.6e-21 74.7 0.0 5e-21 74.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 NTP_transf_2 PF01909.18 gi|549455371|ref|YP_008604130.1| - 4.2e-11 43.0 0.2 5.7e-11 42.6 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain AA_kinase PF00696.23 gi|549455372|ref|YP_008604131.1| - 1.2e-42 146.1 0.0 2e-42 145.4 0.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT PF01842.20 gi|549455372|ref|YP_008604131.1| - 6.6e-09 35.0 0.1 2.2e-08 33.3 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|549455372|ref|YP_008604131.1| - 9e-05 21.9 0.0 0.00025 20.4 0.0 1.8 1 0 0 1 1 1 1 ACT domain DUF2007 PF09413.5 gi|549455372|ref|YP_008604131.1| - 0.14 11.9 0.1 9 6.2 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2007) Semialdhyde_dhC PF02774.13 gi|549455373|ref|YP_008604132.1| - 7.1e-33 114.0 0.0 9.8e-33 113.5 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|549455373|ref|YP_008604132.1| - 1.4e-25 89.9 0.0 2.3e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Homoserine_dh PF00742.14 gi|549455374|ref|YP_008604133.1| - 7e-37 126.8 0.0 8.8e-37 126.5 0.0 1.1 1 0 0 1 1 1 1 Homoserine dehydrogenase Ribosomal_S3Ae PF01015.13 gi|549455377|ref|YP_008604136.1| - 2.3e-71 239.1 0.0 2.7e-71 238.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family ELYS PF13934.1 gi|549455377|ref|YP_008604136.1| - 0.00022 21.0 0.0 0.0003 20.6 0.0 1.2 1 0 0 1 1 1 1 Nuclear pore complex assembly SPOUT_MTase_2 PF14419.1 gi|549455378|ref|YP_008604137.1| - 9.9e-77 256.0 0.3 1.3e-76 255.6 0.2 1.1 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.12 gi|549455378|ref|YP_008604137.1| - 4.1e-23 81.8 0.0 8.6e-23 80.8 0.0 1.5 1 0 0 1 1 1 1 THUMP domain Radical_SAM PF04055.16 gi|549455379|ref|YP_008604138.1| - 2.2e-15 57.2 0.0 4.6e-15 56.1 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|549455379|ref|YP_008604138.1| - 0.0046 16.8 0.2 0.024 14.5 0.0 2.3 3 0 0 3 3 3 1 B12 binding domain RNase_P_Rpp14 PF01900.14 gi|549455380|ref|YP_008604139.1| - 2.2e-13 50.0 0.0 2.8e-13 49.7 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family GAF_2 PF13185.1 gi|549455380|ref|YP_008604139.1| - 0.065 13.7 0.2 0.081 13.4 0.1 1.2 1 0 0 1 1 1 0 GAF domain MMR_HSR1_C PF08438.5 gi|549455381|ref|YP_008604140.1| - 1.2e-34 118.8 0.0 1.9e-34 118.1 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal TGS PF02824.16 gi|549455381|ref|YP_008604140.1| - 6.6e-17 61.1 0.0 1.3e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|549455381|ref|YP_008604140.1| - 3.2e-16 59.3 0.0 1.2e-15 57.5 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|549455381|ref|YP_008604140.1| - 1.2e-06 27.8 0.0 0.00026 20.3 0.1 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B YchF-GTPase_C PF06071.8 gi|549455381|ref|YP_008604140.1| - 0.01 15.5 0.1 0.91 9.3 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF933) GTP_EFTU PF00009.22 gi|549455381|ref|YP_008604140.1| - 0.024 14.0 0.0 1.5 8.2 0.0 3.1 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain DUF460 PF04312.8 gi|549455381|ref|YP_008604140.1| - 0.067 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF460) AAA_29 PF13555.1 gi|549455381|ref|YP_008604140.1| - 0.097 12.2 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SBDS PF01172.13 gi|549455382|ref|YP_008604141.1| - 1.7e-24 85.4 0.0 2.6e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|549455382|ref|YP_008604141.1| - 1.8e-18 66.4 0.0 2.5e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain HI0933_like PF03486.9 gi|549455382|ref|YP_008604141.1| - 0.002 16.7 0.0 0.003 16.1 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Metallophos_2 PF12850.2 gi|549455383|ref|YP_008604142.1| - 4e-11 42.9 0.0 4.6e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_2 PF12850.2 gi|549455384|ref|YP_008604143.1| - 1.1e-14 54.5 0.0 1.2e-14 54.4 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|549455384|ref|YP_008604143.1| - 1.9e-12 46.9 0.6 2.3e-12 46.7 0.4 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.6 gi|549455384|ref|YP_008604143.1| - 0.13 10.2 0.1 1.4 6.8 0.1 1.9 1 1 1 2 2 2 0 Firmicute fructose-1,6-bisphosphatase Peptidase_S24 PF00717.18 gi|549455385|ref|YP_008604144.1| - 6.5e-06 25.6 0.1 1.1e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like DUF3117 PF11314.3 gi|549455387|ref|YP_008604146.1| - 0.24 10.9 3.7 8.5 5.9 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3117) UPF0542 PF15086.1 gi|549455389|ref|YP_008604148.1| - 0.052 13.2 0.2 0.17 11.6 0.0 1.7 1 1 0 2 2 2 0 Uncharacterised protein family UPF0542 MnhB PF04039.8 gi|549455389|ref|YP_008604148.1| - 0.056 13.4 0.4 0.064 13.3 0.3 1.1 1 0 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter Polysacc_synt PF01943.12 gi|549455392|ref|YP_008604151.1| - 8.3e-07 28.5 28.1 8.3e-07 28.5 19.5 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|549455392|ref|YP_008604151.1| - 2.7e-06 27.0 56.0 4.4e-05 23.0 28.5 2.3 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein MFS_1 PF07690.11 gi|549455393|ref|YP_008604152.1| - 0.0011 17.7 0.0 0.0012 17.6 0.0 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF2254 PF10011.4 gi|549455393|ref|YP_008604152.1| - 0.0041 15.6 0.0 0.006 15.0 0.0 1.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2254) IncA PF04156.9 gi|549455393|ref|YP_008604152.1| - 0.0066 16.0 0.0 0.01 15.4 0.0 1.3 1 1 0 1 1 1 1 IncA protein DUF4131 PF13567.1 gi|549455393|ref|YP_008604152.1| - 0.039 13.3 0.0 0.044 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) T2SM PF04612.7 gi|549455393|ref|YP_008604152.1| - 0.041 13.6 0.2 0.13 12.0 0.0 1.8 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M HGTP_anticodon PF03129.15 gi|549455393|ref|YP_008604152.1| - 0.063 13.2 0.1 0.088 12.7 0.0 1.1 1 0 0 1 1 1 0 Anticodon binding domain APS_kinase PF01583.15 gi|549455394|ref|YP_008604153.1| - 2.5e-59 199.4 0.0 3e-59 199.1 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|549455394|ref|YP_008604153.1| - 1.1e-10 41.6 0.0 1.3e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|549455394|ref|YP_008604153.1| - 4.5e-09 36.6 0.0 7.1e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|549455394|ref|YP_008604153.1| - 1.1e-08 34.6 0.0 1.4e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_17 PF13207.1 gi|549455394|ref|YP_008604153.1| - 3.8e-08 34.1 0.0 5e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|549455394|ref|YP_008604153.1| - 4.3e-06 25.7 0.0 5.9e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 ArgK protein SKI PF01202.17 gi|549455394|ref|YP_008604153.1| - 3e-05 23.9 0.0 6.3e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 Shikimate kinase NTPase_1 PF03266.10 gi|549455394|ref|YP_008604153.1| - 9.3e-05 22.1 0.0 0.00018 21.2 0.0 1.5 1 0 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|549455394|ref|YP_008604153.1| - 0.00011 21.8 0.1 0.00031 20.4 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain SRP54 PF00448.17 gi|549455394|ref|YP_008604153.1| - 0.00012 21.5 0.0 0.00019 20.9 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|549455394|ref|YP_008604153.1| - 0.00014 21.8 0.1 0.00049 20.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain 6PF2K PF01591.13 gi|549455394|ref|YP_008604153.1| - 0.0002 20.5 0.0 0.00041 19.4 0.0 1.5 2 0 0 2 2 2 1 6-phosphofructo-2-kinase AAA_30 PF13604.1 gi|549455394|ref|YP_008604153.1| - 0.00033 20.2 0.0 0.00054 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|549455394|ref|YP_008604153.1| - 0.00059 19.3 0.0 0.00081 18.8 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|549455394|ref|YP_008604153.1| - 0.00084 19.5 0.0 0.0027 17.9 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|549455394|ref|YP_008604153.1| - 0.00098 18.5 0.0 0.0013 18.1 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.9 gi|549455394|ref|YP_008604153.1| - 0.0013 18.4 0.0 0.0022 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|549455394|ref|YP_008604153.1| - 0.0018 17.7 0.1 0.0052 16.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|549455394|ref|YP_008604153.1| - 0.0037 16.3 0.0 0.0053 15.8 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|549455394|ref|YP_008604153.1| - 0.0037 16.9 0.0 0.0058 16.3 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|549455394|ref|YP_008604153.1| - 0.0047 17.0 0.0 0.0092 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|549455394|ref|YP_008604153.1| - 0.0048 16.9 0.1 0.015 15.3 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain CoaE PF01121.15 gi|549455394|ref|YP_008604153.1| - 0.0052 16.1 0.0 0.0084 15.5 0.0 1.4 1 0 0 1 1 1 1 Dephospho-CoA kinase Mg_chelatase PF01078.16 gi|549455394|ref|YP_008604153.1| - 0.0065 15.6 0.1 0.026 13.6 0.0 1.9 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|549455394|ref|YP_008604153.1| - 0.0068 16.0 0.1 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain ATP_bind_1 PF03029.12 gi|549455394|ref|YP_008604153.1| - 0.0086 15.6 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein UPF0079 PF02367.12 gi|549455394|ref|YP_008604153.1| - 0.018 14.6 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF2005 PF09407.5 gi|549455394|ref|YP_008604153.1| - 0.021 13.5 0.7 0.057 12.1 0.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2005) Cytidylate_kin2 PF13189.1 gi|549455394|ref|YP_008604153.1| - 0.024 14.5 0.0 0.05 13.5 0.0 1.6 2 0 0 2 2 1 0 Cytidylate kinase-like family ABC_tran PF00005.22 gi|549455394|ref|YP_008604153.1| - 0.026 14.8 0.0 0.04 14.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|549455394|ref|YP_008604153.1| - 0.028 14.3 0.0 0.059 13.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|549455394|ref|YP_008604153.1| - 0.048 13.8 0.0 0.081 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|549455394|ref|YP_008604153.1| - 0.051 12.9 0.0 0.076 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain Thymidylate_kin PF02223.12 gi|549455394|ref|YP_008604153.1| - 0.056 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase MipZ PF09140.6 gi|549455394|ref|YP_008604153.1| - 0.062 12.3 0.0 0.085 11.9 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ AAA_3 PF07726.6 gi|549455394|ref|YP_008604153.1| - 0.068 12.7 0.0 0.14 11.7 0.0 1.5 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) HHH_3 PF12836.2 gi|549455395|ref|YP_008604154.1| - 0.16 11.9 0.3 1.1 9.2 0.1 2.2 2 1 0 2 2 2 0 Helix-hairpin-helix motif TauE PF01925.14 gi|549455396|ref|YP_008604155.1| - 2.3e-23 82.9 26.8 2.3e-23 82.9 18.6 1.5 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE DUF4383 PF14325.1 gi|549455396|ref|YP_008604155.1| - 0.41 10.6 15.3 2.9 7.9 5.1 3.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4383) ATP-sulfurylase PF01747.12 gi|549455397|ref|YP_008604156.1| - 2.6e-89 298.1 0.1 3.7e-89 297.6 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|549455397|ref|YP_008604156.1| - 1e-48 164.7 0.0 2.1e-48 163.7 0.0 1.5 2 0 0 2 2 2 1 PUA-like domain Phosphodiest PF01663.17 gi|549455398|ref|YP_008604157.1| - 4e-29 102.0 0.0 5.1e-29 101.7 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|549455398|ref|YP_008604157.1| - 0.001 18.3 0.0 0.0015 17.8 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Methyltransf_21 PF05050.7 gi|549455399|ref|YP_008604158.1| - 2.3e-24 86.2 0.2 3e-24 85.8 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|549455399|ref|YP_008604158.1| - 1.4e-06 28.0 1.0 4.3e-06 26.4 0.2 1.9 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|549455399|ref|YP_008604158.1| - 0.00027 21.5 0.0 0.00057 20.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|549455399|ref|YP_008604158.1| - 0.00033 19.8 0.4 0.00061 18.9 0.2 1.4 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein RrnaAD PF00398.15 gi|549455399|ref|YP_008604158.1| - 0.016 14.2 0.0 0.028 13.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Sulfatase PF00884.18 gi|549455400|ref|YP_008604159.1| - 0.004 16.3 0.0 0.0055 15.9 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Glycos_transf_1 PF00534.15 gi|549455401|ref|YP_008604160.1| - 2.7e-18 65.9 0.1 2.1e-17 63.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|549455401|ref|YP_008604160.1| - 5.7e-10 39.4 0.0 1.7e-09 37.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|549455401|ref|YP_008604160.1| - 7.5e-05 22.5 1.2 0.00036 20.2 0.1 2.2 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.21 gi|549455402|ref|YP_008604161.1| - 0.0034 17.0 0.3 0.0064 16.1 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|549455404|ref|YP_008604163.1| - 2.5e-07 30.7 0.0 3.9e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|549455404|ref|YP_008604163.1| - 2.7e-07 30.4 1.8 2.7e-07 30.4 1.3 2.2 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|549455404|ref|YP_008604163.1| - 3.3e-06 26.9 2.8 5.6e-06 26.1 1.9 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|549455404|ref|YP_008604163.1| - 1.4e-05 24.5 0.0 4.4e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 NTP_transferase PF00483.18 gi|549455404|ref|YP_008604163.1| - 0.0027 17.0 0.1 0.0045 16.3 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase Glycos_transf_2 PF00535.21 gi|549455405|ref|YP_008604164.1| - 2e-27 95.8 0.0 3.1e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|549455405|ref|YP_008604164.1| - 8.2e-11 42.1 0.0 4e-10 39.8 0.0 1.8 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|549455405|ref|YP_008604164.1| - 0.013 14.7 0.0 0.022 14.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|549455405|ref|YP_008604164.1| - 0.046 14.0 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Osmo_MPGsynth PF09488.5 gi|549455405|ref|YP_008604164.1| - 0.25 9.9 2.8 0.59 8.7 0.3 2.4 2 1 1 3 3 3 0 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) DUF1426 PF07234.6 gi|549455405|ref|YP_008604164.1| - 0.61 9.8 6.5 1.3 8.7 4.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1426) DUF373 PF04123.8 gi|549455405|ref|YP_008604164.1| - 0.62 9.0 7.3 0.96 8.3 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF373) NTP_transferase PF00483.18 gi|549455406|ref|YP_008604165.1| - 1.2e-21 77.1 0.0 1.5e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|549455406|ref|YP_008604165.1| - 6.1e-15 53.9 12.9 3.4e-06 26.3 0.5 4.1 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|549455406|ref|YP_008604165.1| - 2.5e-10 40.6 0.3 3.5e-10 40.1 0.2 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|549455406|ref|YP_008604165.1| - 0.022 14.3 4.1 0.97 9.0 0.1 3.6 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase SIS PF01380.17 gi|549455407|ref|YP_008604166.1| - 9.8e-44 148.1 0.2 1.1e-29 102.7 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|549455407|ref|YP_008604166.1| - 4.8e-22 78.3 0.1 9.3e-22 77.4 0.1 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|549455407|ref|YP_008604166.1| - 1.6e-18 66.6 0.1 2e-14 53.0 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|549455407|ref|YP_008604166.1| - 2.3e-16 59.6 0.0 5.1e-16 58.5 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|549455407|ref|YP_008604166.1| - 5.8e-05 21.9 0.0 8.2e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|549455407|ref|YP_008604166.1| - 0.011 15.4 0.2 0.18 11.5 0.0 2.6 2 1 0 2 2 2 0 SIS domain bact-PGI_C PF10432.4 gi|549455407|ref|YP_008604166.1| - 0.036 13.7 0.0 0.2 11.3 0.0 2.4 2 1 0 2 2 2 0 Bacterial phospho-glucose isomerase C-terminal region Abhydrolase_5 PF12695.2 gi|549455407|ref|YP_008604166.1| - 0.099 12.3 2.6 0.4 10.4 0.2 2.4 2 0 0 2 2 2 0 Alpha/beta hydrolase family NTP_transf_3 PF12804.2 gi|549455408|ref|YP_008604167.1| - 6.2e-11 42.6 0.6 1.2e-10 41.7 0.1 1.8 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|549455408|ref|YP_008604167.1| - 9.4e-11 40.7 22.3 1.2e-06 27.7 2.7 4.5 3 1 2 5 5 5 3 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.18 gi|549455408|ref|YP_008604167.1| - 2.6e-07 30.1 0.1 7.1e-07 28.7 0.0 1.7 2 0 0 2 2 2 1 Nucleotidyl transferase Hexapep_2 PF14602.1 gi|549455408|ref|YP_008604167.1| - 0.011 15.2 1.2 0.011 15.2 0.8 3.5 3 1 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|549455408|ref|YP_008604167.1| - 0.06 12.8 0.0 0.087 12.3 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MOSC_N PF03476.11 gi|549455409|ref|YP_008604168.1| - 4.2e-12 45.8 0.0 2e-11 43.6 0.0 1.9 1 1 1 2 2 2 1 MOSC N-terminal beta barrel domain MOSC PF03473.12 gi|549455409|ref|YP_008604168.1| - 5.9e-11 41.9 0.0 1.5e-10 40.6 0.0 1.6 1 1 0 1 1 1 1 MOSC domain Acyl-CoA_dh_1 PF00441.19 gi|549455410|ref|YP_008604169.1| - 5e-42 143.5 5.3 7.6e-42 142.9 3.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|549455410|ref|YP_008604169.1| - 4.2e-33 114.2 0.8 8.8e-33 113.2 0.1 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|549455410|ref|YP_008604169.1| - 2.7e-19 68.4 0.6 5.5e-19 67.4 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|549455410|ref|YP_008604169.1| - 8.1e-14 52.0 4.7 1.6e-13 51.0 3.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain PIN PF01850.16 gi|549455411|ref|YP_008604170.1| - 7.9e-11 42.3 1.1 9.6e-11 42.0 0.8 1.1 1 0 0 1 1 1 1 PIN domain RHH_3 PF12651.2 gi|549455412|ref|YP_008604171.1| - 0.094 12.4 0.1 0.23 11.2 0.0 1.7 1 1 0 1 1 1 0 Ribbon-helix-helix domain DUF3323 PF11796.3 gi|549455412|ref|YP_008604171.1| - 0.21 10.9 2.4 0.23 10.7 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) DUF2389 PF09493.5 gi|549455412|ref|YP_008604171.1| - 0.39 11.0 4.6 0.34 11.1 1.5 1.9 1 1 1 2 2 2 0 Tryptophan-rich protein (DUF2389) CcdA PF07362.7 gi|549455412|ref|YP_008604171.1| - 0.7 9.8 6.1 1.9 8.4 4.2 1.8 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA PSK_trans_fac PF07704.6 gi|549455412|ref|YP_008604171.1| - 0.75 10.5 4.6 1.5 9.5 3.2 1.6 1 1 0 1 1 1 0 Rv0623-like transcription factor RHH_1 PF01402.16 gi|549455412|ref|YP_008604171.1| - 2.5 8.1 8.4 0.13 12.2 0.9 2.6 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family Peptidase_S8 PF00082.17 gi|549455413|ref|YP_008604172.1| - 1.5e-20 73.5 0.0 3.2e-19 69.1 0.0 2.7 1 1 0 1 1 1 1 Subtilase family VCBS PF13517.1 gi|549455413|ref|YP_008604172.1| - 1.7 9.0 8.4 3.9 7.9 0.1 3.8 3 1 1 4 4 4 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Reo_sigmaC PF04582.7 gi|549455414|ref|YP_008604173.1| - 8.6e-14 51.4 22.4 1.8e-07 30.6 3.8 3.0 1 1 2 3 3 3 2 Reovirus sigma C capsid protein Myosin_tail_1 PF01576.14 gi|549455414|ref|YP_008604173.1| - 9.1e-12 43.5 23.0 1.2e-11 43.1 16.0 1.1 1 0 0 1 1 1 1 Myosin tail Tropomyosin PF00261.15 gi|549455414|ref|YP_008604173.1| - 1.8e-11 43.6 28.6 6.3e-07 28.7 5.1 3.1 1 1 2 3 3 3 3 Tropomyosin Tropomyosin_1 PF12718.2 gi|549455414|ref|YP_008604173.1| - 1.4e-10 41.2 28.7 4e-08 33.2 11.6 3.7 1 1 2 3 3 3 2 Tropomyosin like AAA_13 PF13166.1 gi|549455414|ref|YP_008604173.1| - 5.6e-10 38.3 1.5 5.6e-10 38.3 1.0 2.1 1 1 1 2 2 2 1 AAA domain IFT57 PF10498.4 gi|549455414|ref|YP_008604173.1| - 3e-09 36.1 21.5 7.5e-07 28.2 1.6 2.4 1 1 2 3 3 3 3 Intra-flagellar transport protein 57 Baculo_PEP_C PF04513.7 gi|549455414|ref|YP_008604173.1| - 1.3e-08 34.7 21.2 5.9e-05 22.9 2.3 3.9 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.4 gi|549455414|ref|YP_008604173.1| - 2.6e-08 33.8 33.2 0.00021 21.1 5.4 3.0 1 1 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin_2 PF01920.15 gi|549455414|ref|YP_008604173.1| - 3.4e-08 33.1 23.3 0.35 10.6 0.1 6.2 1 1 5 6 6 6 1 Prefoldin subunit ADIP PF11559.3 gi|549455414|ref|YP_008604173.1| - 6.1e-08 32.7 25.8 0.0025 17.7 0.3 4.0 1 1 3 4 4 4 2 Afadin- and alpha -actinin-Binding Spc7 PF08317.6 gi|549455414|ref|YP_008604173.1| - 8.8e-08 31.1 21.4 2.6e-05 23.0 3.3 3.2 1 1 2 3 3 3 2 Spc7 kinetochore protein TBPIP PF07106.8 gi|549455414|ref|YP_008604173.1| - 9.9e-08 31.7 21.6 0.0023 17.4 0.6 4.1 1 1 2 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Filament PF00038.16 gi|549455414|ref|YP_008604173.1| - 1.1e-07 31.6 24.7 3.8e-06 26.5 5.0 2.9 1 1 1 2 2 2 2 Intermediate filament protein FlaC_arch PF05377.6 gi|549455414|ref|YP_008604173.1| - 1.2e-07 31.4 16.7 0.081 12.8 0.2 6.8 1 1 7 8 8 8 2 Flagella accessory protein C (FlaC) Laminin_II PF06009.7 gi|549455414|ref|YP_008604173.1| - 1.8e-07 30.9 21.1 0.014 15.1 1.0 4.6 1 1 4 5 5 5 4 Laminin Domain II TMF_DNA_bd PF12329.3 gi|549455414|ref|YP_008604173.1| - 2.1e-07 30.6 31.2 0.05 13.4 1.3 5.3 1 1 5 7 7 7 5 TATA element modulatory factor 1 DNA binding EzrA PF06160.7 gi|549455414|ref|YP_008604173.1| - 2.3e-07 29.3 16.6 7.3e-07 27.7 1.8 2.5 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA SlyX PF04102.7 gi|549455414|ref|YP_008604173.1| - 2.7e-07 30.8 40.0 0.00084 19.6 0.7 5.9 1 1 6 7 7 7 3 SlyX HrpB7 PF09486.5 gi|549455414|ref|YP_008604173.1| - 4.9e-07 29.8 30.7 0.0017 18.3 4.5 4.5 1 1 3 4 4 4 1 Bacterial type III secretion protein (HrpB7) ATG16 PF08614.6 gi|549455414|ref|YP_008604173.1| - 7.2e-07 29.2 30.9 0.012 15.3 5.5 4.1 1 1 3 4 4 4 2 Autophagy protein 16 (ATG16) Cast PF10174.4 gi|549455414|ref|YP_008604173.1| - 7.7e-07 27.5 31.4 3.9e-06 25.2 16.6 2.0 1 1 1 2 2 2 2 RIM-binding protein of the cytomatrix active zone DUF1664 PF07889.7 gi|549455414|ref|YP_008604173.1| - 8.1e-07 28.8 15.9 0.00055 19.7 0.4 3.9 1 1 3 4 4 4 3 Protein of unknown function (DUF1664) MscS_porin PF12795.2 gi|549455414|ref|YP_008604173.1| - 9.2e-07 28.4 45.9 8.7e-05 21.9 11.1 3.8 1 1 3 4 4 4 2 Mechanosensitive ion channel porin domain DUF869 PF05911.6 gi|549455414|ref|YP_008604173.1| - 2.1e-06 26.2 17.6 6.8e-06 24.6 12.2 1.7 1 1 0 1 1 1 1 Plant protein of unknown function (DUF869) MAD PF05557.8 gi|549455414|ref|YP_008604173.1| - 4.3e-06 25.1 26.8 8e-05 20.9 6.6 2.9 1 1 2 3 3 3 2 Mitotic checkpoint protein IncA PF04156.9 gi|549455414|ref|YP_008604173.1| - 5.2e-06 26.1 42.7 4.5e-05 23.1 3.7 3.9 3 1 1 4 4 2 2 IncA protein Nup54 PF13874.1 gi|549455414|ref|YP_008604173.1| - 5.8e-06 26.0 24.8 0.00022 20.8 3.3 4.0 1 1 1 3 3 3 2 Nucleoporin complex subunit 54 NPV_P10 PF05531.7 gi|549455414|ref|YP_008604173.1| - 7.6e-06 26.0 23.0 0.051 13.8 0.1 5.6 1 1 2 3 3 2 2 Nucleopolyhedrovirus P10 protein Atg14 PF10186.4 gi|549455414|ref|YP_008604173.1| - 1.3e-05 24.3 21.1 0.02 13.8 10.6 2.7 1 1 2 3 3 3 3 UV radiation resistance protein and autophagy-related subunit 14 GAS PF13851.1 gi|549455414|ref|YP_008604173.1| - 1.4e-05 24.3 18.4 0.00081 18.6 8.3 2.7 1 1 0 2 2 2 1 Growth-arrest specific micro-tubule binding Uds1 PF15456.1 gi|549455414|ref|YP_008604173.1| - 3.2e-05 23.9 26.2 0.00076 19.4 3.5 3.4 2 1 1 3 3 3 1 Up-regulated During Septation APG6 PF04111.7 gi|549455414|ref|YP_008604173.1| - 7.6e-05 21.9 24.6 0.00061 18.9 2.2 2.9 1 1 2 3 3 3 2 Autophagy protein Apg6 RmuC PF02646.11 gi|549455414|ref|YP_008604173.1| - 8.7e-05 21.5 11.0 0.072 11.9 0.1 4.2 1 1 3 4 4 4 1 RmuC family PspA_IM30 PF04012.7 gi|549455414|ref|YP_008604173.1| - 0.0001 21.7 30.4 0.043 13.1 4.8 4.5 1 1 2 3 3 3 1 PspA/IM30 family Transposase_22 PF02994.9 gi|549455414|ref|YP_008604173.1| - 0.0001 20.9 0.8 0.0001 20.9 0.5 2.9 1 1 2 3 3 3 1 L1 transposable element DUF4200 PF13863.1 gi|549455414|ref|YP_008604173.1| - 0.0001 22.2 19.8 0.33 10.8 1.3 3.4 1 1 2 3 3 3 2 Domain of unknown function (DUF4200) Fib_alpha PF08702.5 gi|549455414|ref|YP_008604173.1| - 0.00016 21.7 12.9 0.0062 16.6 0.4 3.4 1 1 2 3 3 3 1 Fibrinogen alpha/beta chain family Mnd1 PF03962.10 gi|549455414|ref|YP_008604173.1| - 0.00022 20.9 21.0 0.027 14.1 6.4 3.2 1 1 2 3 3 3 2 Mnd1 family DUF3584 PF12128.3 gi|549455414|ref|YP_008604173.1| - 0.00022 18.7 25.8 0.0023 15.4 17.5 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) WEMBL PF05701.6 gi|549455414|ref|YP_008604173.1| - 0.00024 19.7 31.7 0.0028 16.1 15.2 2.0 1 1 1 2 2 2 2 Weak chloroplast movement under blue light DUF972 PF06156.8 gi|549455414|ref|YP_008604173.1| - 0.00025 21.3 20.3 0.14 12.4 3.7 4.2 1 1 3 4 4 4 1 Protein of unknown function (DUF972) FH2 PF02181.18 gi|549455414|ref|YP_008604173.1| - 0.00026 20.0 11.3 0.003 16.4 0.8 3.2 1 1 2 3 3 3 1 Formin Homology 2 Domain XhlA PF10779.4 gi|549455414|ref|YP_008604173.1| - 0.00034 20.4 16.0 3.7 7.5 0.3 5.0 1 1 3 5 5 5 0 Haemolysin XhlA Laminin_I PF06008.9 gi|549455414|ref|YP_008604173.1| - 0.00056 19.2 28.1 0.017 14.4 19.2 2.6 1 1 1 2 2 1 1 Laminin Domain I DUF4201 PF13870.1 gi|549455414|ref|YP_008604173.1| - 0.00068 19.1 14.8 0.043 13.2 1.4 2.9 1 1 2 3 3 3 2 Domain of unknown function (DUF4201) DUF745 PF05335.8 gi|549455414|ref|YP_008604173.1| - 0.0011 18.4 27.8 0.011 15.2 8.3 3.0 1 1 2 3 3 3 3 Protein of unknown function (DUF745) DUF3450 PF11932.3 gi|549455414|ref|YP_008604173.1| - 0.0013 18.0 23.6 0.034 13.3 2.2 3.3 1 1 2 3 3 3 2 Protein of unknown function (DUF3450) Prefoldin PF02996.12 gi|549455414|ref|YP_008604173.1| - 0.0014 18.2 23.9 2.8 7.6 0.2 6.2 1 1 4 7 7 7 0 Prefoldin subunit FliJ PF02050.11 gi|549455414|ref|YP_008604173.1| - 0.0015 18.5 25.6 0.016 15.2 2.4 3.6 1 1 2 3 3 3 1 Flagellar FliJ protein MtrB PF05440.7 gi|549455414|ref|YP_008604173.1| - 0.0015 18.5 5.4 3.6 7.6 0.0 4.8 1 1 4 6 6 4 0 Tetrahydromethanopterin S-methyltransferase subunit B CAMP_factor PF07373.6 gi|549455414|ref|YP_008604173.1| - 0.0019 17.7 6.0 0.012 15.1 1.5 2.3 1 1 1 2 2 2 1 CAMP factor (Cfa) BLOC1_2 PF10046.4 gi|549455414|ref|YP_008604173.1| - 0.0022 18.0 19.3 2.3 8.4 0.8 4.9 1 1 4 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TPR_MLP1_2 PF07926.7 gi|549455414|ref|YP_008604173.1| - 0.0024 17.6 3.2 0.0024 17.6 2.2 4.2 1 1 2 3 3 3 1 TPR/MLP1/MLP2-like protein EMP24_GP25L PF01105.19 gi|549455414|ref|YP_008604173.1| - 0.0031 17.2 14.4 2.9 7.5 0.5 4.3 1 1 3 4 4 4 0 emp24/gp25L/p24 family/GOLD Med9 PF07544.8 gi|549455414|ref|YP_008604173.1| - 0.0031 17.2 25.0 0.033 13.9 2.0 4.8 1 1 3 4 4 4 1 RNA polymerase II transcription mediator complex subunit 9 Bacillus_HBL PF05791.6 gi|549455414|ref|YP_008604173.1| - 0.0037 16.6 16.4 0.2 10.9 0.9 3.9 1 1 4 5 5 5 2 Bacillus haemolytic enterotoxin (HBL) WASH_WAHD PF11945.3 gi|549455414|ref|YP_008604173.1| - 0.0037 16.5 3.7 0.5 9.6 0.0 3.8 1 1 4 5 5 4 1 WAHD domain of WASH complex TMPIT PF07851.8 gi|549455414|ref|YP_008604173.1| - 0.0038 16.3 5.1 0.68 8.9 0.0 2.4 1 1 0 2 2 2 1 TMPIT-like protein MbeD_MobD PF04899.7 gi|549455414|ref|YP_008604173.1| - 0.0044 16.8 0.8 0.0044 16.8 0.5 4.7 1 1 2 4 4 4 1 MbeD/MobD like Phage_GP20 PF06810.6 gi|549455414|ref|YP_008604173.1| - 0.0054 16.1 19.6 0.31 10.4 0.2 4.1 1 1 2 4 4 4 1 Phage minor structural protein GP20 DUF2730 PF10805.3 gi|549455414|ref|YP_008604173.1| - 0.0059 16.3 20.1 0.4 10.4 0.4 4.9 1 1 4 5 5 5 1 Protein of unknown function (DUF2730) Sec2p PF06428.6 gi|549455414|ref|YP_008604173.1| - 0.0063 16.3 28.8 0.072 12.9 4.8 5.0 1 1 1 3 3 3 2 GDP/GTP exchange factor Sec2p THOC7 PF05615.8 gi|549455414|ref|YP_008604173.1| - 0.0065 16.7 21.1 0.12 12.6 2.4 4.0 1 1 1 2 2 2 1 Tho complex subunit 7 HOOK PF05622.7 gi|549455414|ref|YP_008604173.1| - 0.0066 14.3 29.3 0.023 12.5 15.8 2.2 1 1 1 2 2 2 2 HOOK protein COG2 PF06148.6 gi|549455414|ref|YP_008604173.1| - 0.0066 16.3 24.7 0.73 9.7 2.3 4.9 1 1 3 4 4 4 1 COG (conserved oligomeric Golgi) complex component, COG2 Allexi_40kDa PF05549.6 gi|549455414|ref|YP_008604173.1| - 0.0072 15.6 13.5 0.077 12.2 0.8 3.2 1 1 2 3 3 3 1 Allexivirus 40kDa protein DUF2317 PF10079.4 gi|549455414|ref|YP_008604173.1| - 0.0087 14.7 11.1 0.13 10.8 4.0 2.3 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2317) DUF812 PF05667.6 gi|549455414|ref|YP_008604173.1| - 0.0095 14.5 25.0 0.26 9.7 13.1 3.1 1 1 1 2 2 2 1 Protein of unknown function (DUF812) Lebercilin PF15619.1 gi|549455414|ref|YP_008604173.1| - 0.011 15.2 27.2 0.083 12.3 6.0 3.0 1 1 1 3 3 3 0 Ciliary protein causing Leber congenital amaurosis disease Fmp27_WPPW PF10359.4 gi|549455414|ref|YP_008604173.1| - 0.012 14.1 19.7 0.35 9.2 0.9 3.1 1 1 2 3 3 3 0 RNA pol II promoter Fmp27 protein domain AAA_27 PF13514.1 gi|549455414|ref|YP_008604173.1| - 0.012 13.3 35.0 0.45 8.1 13.5 2.3 1 1 0 2 2 2 0 AAA domain FliD_N PF02465.13 gi|549455414|ref|YP_008604173.1| - 0.013 15.8 14.4 1.3 9.3 3.8 4.6 1 1 3 4 4 4 0 Flagellar hook-associated protein 2 N-terminus DUF342 PF03961.8 gi|549455414|ref|YP_008604173.1| - 0.013 13.9 15.1 0.93 7.8 0.2 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF342) DegS PF05384.6 gi|549455414|ref|YP_008604173.1| - 0.014 14.6 15.4 0.06 12.5 1.2 3.5 1 1 2 3 3 3 0 Sensor protein DegS MitMem_reg PF13012.1 gi|549455414|ref|YP_008604173.1| - 0.015 15.3 10.6 0.54 10.3 0.3 4.3 1 1 3 4 4 4 0 Maintenance of mitochondrial structure and function BicD PF09730.4 gi|549455414|ref|YP_008604173.1| - 0.017 13.4 22.6 0.1 10.9 11.2 2.1 1 1 1 2 2 2 0 Microtubule-associated protein Bicaudal-D Matrilin_ccoil PF10393.4 gi|549455414|ref|YP_008604173.1| - 0.021 14.1 26.5 0.43 9.9 0.5 7.4 5 2 5 10 10 8 0 Trimeric coiled-coil oligomerisation domain of matrilin Cortex-I_coil PF09304.5 gi|549455414|ref|YP_008604173.1| - 0.021 14.8 35.3 0.24 11.4 4.0 4.3 1 1 3 4 4 4 0 Cortexillin I, coiled coil Corona_S2 PF01601.11 gi|549455414|ref|YP_008604173.1| - 0.023 12.8 5.2 1.2 7.1 0.9 2.7 1 1 1 3 3 3 0 Coronavirus S2 glycoprotein IL11 PF07400.6 gi|549455414|ref|YP_008604173.1| - 0.024 14.1 5.8 0.66 9.4 0.7 3.0 1 1 2 3 3 2 0 Interleukin 11 DUF211 PF02680.9 gi|549455414|ref|YP_008604173.1| - 0.024 14.4 0.4 9.1 6.1 0.1 2.8 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 Cluap1 PF10234.4 gi|549455414|ref|YP_008604173.1| - 0.025 13.7 20.0 0.28 10.3 0.2 4.1 1 1 3 4 4 4 0 Clusterin-associated protein-1 Snapin_Pallidin PF14712.1 gi|549455414|ref|YP_008604173.1| - 0.025 14.8 21.7 0.066 13.5 0.3 4.7 1 1 2 3 3 3 0 Snapin/Pallidin DUF1202 PF06717.6 gi|549455414|ref|YP_008604173.1| - 0.026 13.8 0.2 12 5.0 0.1 3.3 3 1 1 4 4 3 0 Protein of unknown function (DUF1202) Hemagglutinin PF00509.13 gi|549455414|ref|YP_008604173.1| - 0.031 12.4 3.5 2.1 6.3 0.0 2.7 2 1 0 3 3 2 0 Haemagglutinin Cob_adeno_trans PF01923.13 gi|549455414|ref|YP_008604173.1| - 0.032 14.0 18.9 0.044 13.5 0.6 4.0 1 1 3 4 4 4 0 Cobalamin adenosyltransferase Mod_r PF07200.8 gi|549455414|ref|YP_008604173.1| - 0.041 13.7 22.2 0.4 10.5 2.3 3.3 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Seryl_tRNA_N PF02403.17 gi|549455414|ref|YP_008604173.1| - 0.077 13.0 22.7 0.41 10.6 1.0 4.5 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain CALCOCO1 PF07888.6 gi|549455414|ref|YP_008604173.1| - 0.082 11.1 29.8 1.7 6.8 20.6 2.0 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like FliD_C PF07195.7 gi|549455414|ref|YP_008604173.1| - 0.093 12.0 10.1 5.7 6.1 0.4 3.7 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 C-terminus V_ATPase_I PF01496.14 gi|549455414|ref|YP_008604173.1| - 0.1 10.4 14.3 3.5 5.3 10.1 2.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Vps52 PF04129.7 gi|549455414|ref|YP_008604173.1| - 0.1 11.0 9.9 0.38 9.2 2.1 2.3 1 1 0 2 2 2 0 Vps52 / Sac2 family DUF16 PF01519.11 gi|549455414|ref|YP_008604173.1| - 0.11 12.7 20.2 0.73 10.0 0.6 4.3 1 1 1 2 2 1 0 Protein of unknown function DUF16 Rootletin PF15035.1 gi|549455414|ref|YP_008604173.1| - 0.12 12.2 29.2 0.14 12.0 4.5 3.3 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion LXG PF04740.7 gi|549455414|ref|YP_008604173.1| - 0.13 12.0 15.8 0.063 13.0 0.5 3.1 1 1 2 3 3 3 0 LXG domain of WXG superfamily Syntaxin-6_N PF09177.6 gi|549455414|ref|YP_008604173.1| - 0.14 12.5 24.3 2.7 8.4 1.5 5.2 1 1 4 5 5 5 0 Syntaxin 6, N-terminal Spc24 PF08286.6 gi|549455414|ref|YP_008604173.1| - 0.16 11.6 24.7 5.4 6.7 0.5 4.9 1 1 3 4 4 4 0 Spc24 subunit of Ndc80 Herpes_U30 PF04523.8 gi|549455414|ref|YP_008604173.1| - 0.16 9.3 8.2 0.22 8.9 0.1 2.1 1 1 0 2 2 2 0 Herpes virus tegument protein U30 DUF4140 PF13600.1 gi|549455414|ref|YP_008604173.1| - 0.16 12.4 38.8 2.4 8.6 0.6 5.8 2 1 5 7 7 6 0 N-terminal domain of unknown function (DUF4140) COG5 PF10392.4 gi|549455414|ref|YP_008604173.1| - 0.17 11.8 21.2 1.4 8.8 3.2 3.9 2 1 0 4 4 3 0 Golgi transport complex subunit 5 DivIVA PF05103.8 gi|549455414|ref|YP_008604173.1| - 0.22 11.5 22.0 5.3 7.1 0.3 4.5 1 1 2 4 4 4 0 DivIVA protein Prominin PF05478.6 gi|549455414|ref|YP_008604173.1| - 0.22 9.0 15.9 0.18 9.2 7.2 2.3 1 1 0 2 2 2 0 Prominin CENP-Q PF13094.1 gi|549455414|ref|YP_008604173.1| - 0.27 11.2 34.8 0.046 13.7 10.9 3.0 1 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Microtub_assoc PF07989.6 gi|549455414|ref|YP_008604173.1| - 0.28 11.0 12.5 4.7 7.1 0.7 4.3 2 1 1 4 4 4 0 Microtubule associated DUF641 PF04859.7 gi|549455414|ref|YP_008604173.1| - 0.28 10.9 17.2 4.4 7.0 0.3 4.1 1 1 3 4 4 4 0 Plant protein of unknown function (DUF641) DUF2400 PF09674.5 gi|549455414|ref|YP_008604173.1| - 0.38 10.4 3.2 11 5.6 0.5 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF2400) Erp_C PF06780.6 gi|549455414|ref|YP_008604173.1| - 0.4 10.5 11.9 1.6 8.5 1.6 2.9 1 1 1 3 3 3 0 Erp protein C-terminus ISG65-75 PF11727.3 gi|549455414|ref|YP_008604173.1| - 0.42 9.6 10.6 0.24 10.4 2.7 2.5 1 1 0 2 2 2 0 Invariant surface glycoprotein Lectin_N PF03954.9 gi|549455414|ref|YP_008604173.1| - 0.46 9.8 21.3 0.21 10.9 3.3 3.9 1 1 3 4 4 3 0 Hepatic lectin, N-terminal domain Streptin-Immun PF11083.3 gi|549455414|ref|YP_008604173.1| - 0.5 10.3 9.2 18 5.4 0.0 4.5 2 2 2 5 5 4 0 Lantibiotic streptin immunity protein Prefoldin_3 PF13758.1 gi|549455414|ref|YP_008604173.1| - 0.51 10.1 12.7 0.08 12.7 0.6 4.3 5 0 0 5 5 4 0 Prefoldin subunit MCPsignal PF00015.16 gi|549455414|ref|YP_008604173.1| - 0.63 9.5 15.9 0.61 9.5 0.8 3.2 1 1 3 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF2353 PF09789.4 gi|549455414|ref|YP_008604173.1| - 0.65 9.1 19.8 0.59 9.3 4.5 2.2 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) LMP PF04778.7 gi|549455414|ref|YP_008604173.1| - 0.77 9.5 6.4 0.39 10.4 1.2 2.5 2 1 0 2 2 2 0 LMP repeated region DASH_Spc19 PF08287.6 gi|549455414|ref|YP_008604173.1| - 0.82 9.2 23.9 0.18 11.3 2.8 3.5 1 1 2 3 3 3 0 Spc19 Syntaxin PF00804.20 gi|549455414|ref|YP_008604173.1| - 0.84 9.8 21.2 24 5.1 0.0 3.4 1 1 1 2 2 1 0 Syntaxin HR1 PF02185.11 gi|549455414|ref|YP_008604173.1| - 0.92 9.2 32.3 0.17 11.6 1.0 6.5 1 1 6 7 7 7 0 Hr1 repeat APG17 PF04108.7 gi|549455414|ref|YP_008604173.1| - 1 8.1 13.9 8 5.1 1.1 2.4 1 1 1 2 2 2 0 Autophagy protein Apg17 ERM PF00769.14 gi|549455414|ref|YP_008604173.1| - 1 8.8 23.8 0.073 12.5 2.8 2.4 1 1 1 2 2 2 0 Ezrin/radixin/moesin family MT PF12777.2 gi|549455414|ref|YP_008604173.1| - 1.2 7.8 11.3 0.074 11.7 1.4 2.5 1 1 0 2 2 2 0 Microtubule-binding stalk of dynein motor AATF-Che1 PF13339.1 gi|549455414|ref|YP_008604173.1| - 1.2 9.2 18.5 20 5.3 3.0 3.5 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Occludin_ELL PF07303.8 gi|549455414|ref|YP_008604173.1| - 1.2 9.8 14.4 35 5.1 3.1 5.0 1 1 4 5 5 4 0 Occludin homology domain DUF2951 PF11166.3 gi|549455414|ref|YP_008604173.1| - 1.5 8.6 8.0 1.9 8.3 0.0 3.4 1 1 1 3 3 3 0 Protein of unknown function (DUF2951) Hemerythrin PF01814.18 gi|549455414|ref|YP_008604173.1| - 1.6 8.8 20.3 1.7 8.7 5.9 3.9 1 1 3 4 4 4 0 Hemerythrin HHE cation binding domain KxDL PF10241.4 gi|549455414|ref|YP_008604173.1| - 1.6 8.6 9.2 0.64 9.9 0.7 3.2 2 1 2 4 4 3 0 Uncharacterized conserved protein YscO PF07321.7 gi|549455414|ref|YP_008604173.1| - 1.7 8.4 28.6 3.6 7.4 0.1 3.6 1 1 2 3 3 3 0 Type III secretion protein YscO DUF3552 PF12072.3 gi|549455414|ref|YP_008604173.1| - 1.8 7.7 29.7 0.22 10.7 2.3 3.6 1 1 3 4 4 4 0 Domain of unknown function (DUF3552) Sipho_Gp157 PF05565.6 gi|549455414|ref|YP_008604173.1| - 1.9 8.0 8.9 17 4.9 0.0 3.0 1 1 4 5 5 5 0 Siphovirus Gp157 CCDC-167 PF15188.1 gi|549455414|ref|YP_008604173.1| - 2 8.3 19.4 1 9.3 0.4 4.1 2 2 1 3 3 3 0 Coiled-coil domain-containing protein 167 YPEB PF14620.1 gi|549455414|ref|YP_008604173.1| - 2.1 7.2 12.6 28 3.5 7.2 2.8 1 1 0 1 1 1 0 YpeB sporulation GrpE PF01025.14 gi|549455414|ref|YP_008604173.1| - 2.2 7.8 21.4 0.37 10.3 1.0 4.1 1 1 3 4 4 4 0 GrpE FlxA PF14282.1 gi|549455414|ref|YP_008604173.1| - 2.2 8.2 29.6 4.2 7.3 9.5 3.8 1 1 3 4 4 3 0 FlxA-like protein Med4 PF10018.4 gi|549455414|ref|YP_008604173.1| - 2.3 7.5 30.7 3 7.1 1.0 4.1 1 1 3 4 4 4 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF1342 PF07072.6 gi|549455414|ref|YP_008604173.1| - 2.8 7.5 15.6 0.029 14.0 0.7 2.9 1 1 1 2 2 1 0 Protein of unknown function (DUF1342) HAUS-augmin3 PF14932.1 gi|549455414|ref|YP_008604173.1| - 2.8 7.0 26.9 2.1 7.4 3.2 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 LMBR1 PF04791.11 gi|549455414|ref|YP_008604173.1| - 3.6 6.0 5.2 9.4 4.6 0.3 2.2 2 0 0 2 2 2 0 LMBR1-like membrane protein DUF948 PF06103.6 gi|549455414|ref|YP_008604173.1| - 3.7 7.4 25.3 1.4 8.8 0.1 5.4 2 1 4 6 6 5 0 Bacterial protein of unknown function (DUF948) Fez1 PF06818.10 gi|549455414|ref|YP_008604173.1| - 3.8 7.4 31.1 17 5.3 17.3 2.7 1 1 1 2 2 2 0 Fez1 DUF1395 PF07160.7 gi|549455414|ref|YP_008604173.1| - 4.3 6.7 10.4 21 4.5 0.1 2.8 1 1 1 3 3 3 0 Protein of unknown function (DUF1395) GP41 PF00517.12 gi|549455414|ref|YP_008604173.1| - 4.4 6.8 13.2 20 4.6 0.0 4.5 1 1 2 4 4 3 0 Retroviral envelope protein Surfac_D-trimer PF09006.6 gi|549455414|ref|YP_008604173.1| - 4.5 7.0 11.9 15 5.3 0.0 5.6 6 1 1 7 7 4 0 Lung surfactant protein D coiled-coil trimerisation GST_C_3 PF14497.1 gi|549455414|ref|YP_008604173.1| - 4.7 7.7 6.6 6.6e+02 0.8 4.5 3.9 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Sas10_Utp3 PF04000.10 gi|549455414|ref|YP_008604173.1| - 5.2 7.3 18.2 18 5.6 0.3 5.1 2 1 2 4 4 4 0 Sas10/Utp3/C1D family FemAB PF02388.11 gi|549455414|ref|YP_008604173.1| - 5.7 5.5 9.7 14 4.2 0.1 2.7 1 1 2 3 3 3 0 FemAB family Sec8_exocyst PF04048.9 gi|549455414|ref|YP_008604173.1| - 6.9 6.3 13.0 14 5.3 0.7 3.4 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain DivIC PF04977.10 gi|549455414|ref|YP_008604173.1| - 7 6.2 31.1 10 5.6 0.1 6.4 1 1 7 8 8 8 0 Septum formation initiator YojJ PF10372.4 gi|549455414|ref|YP_008604173.1| - 7.2 6.5 6.2 27 4.7 0.1 4.2 2 1 4 6 6 3 0 Bacterial membrane-spanning protein N-terminus WXG100 PF06013.7 gi|549455414|ref|YP_008604173.1| - 7.9 6.5 21.9 4 7.5 0.7 5.1 1 1 5 6 6 6 0 Proteins of 100 residues with WXG IL6 PF00489.12 gi|549455414|ref|YP_008604173.1| - 7.9 6.0 8.7 6.8 6.2 0.2 3.5 1 1 0 3 3 3 0 Interleukin-6/G-CSF/MGF family DUF2802 PF10975.3 gi|549455414|ref|YP_008604173.1| - 9 6.1 21.8 2.6 7.8 1.5 6.0 2 2 2 4 4 3 0 Protein of unknown function (DUF2802) DUF607 PF04678.8 gi|549455414|ref|YP_008604173.1| - 9.4 6.1 12.5 18 5.2 2.4 3.3 1 1 0 2 2 2 0 Protein of unknown function, DUF607 CcdA PF07362.7 gi|549455415|ref|YP_008604174.1| - 0.00029 20.6 0.0 0.00034 20.4 0.0 1.1 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA KaiA PF07688.7 gi|549455415|ref|YP_008604174.1| - 0.012 14.8 0.2 0.014 14.6 0.1 1.0 1 0 0 1 1 1 0 KaiA domain RepB-RCR_reg PF10723.4 gi|549455415|ref|YP_008604174.1| - 0.047 13.4 0.0 0.063 13.0 0.0 1.1 1 0 0 1 1 1 0 Replication regulatory protein RepB PSK_trans_fac PF07704.6 gi|549455415|ref|YP_008604174.1| - 0.049 14.3 0.2 0.057 14.1 0.1 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor DUF4140 PF13600.1 gi|549455415|ref|YP_008604174.1| - 0.066 13.6 0.2 0.074 13.4 0.1 1.0 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) RHH_1 PF01402.16 gi|549455415|ref|YP_008604174.1| - 0.16 11.9 2.3 2.2 8.2 1.0 2.6 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|549455415|ref|YP_008604174.1| - 0.24 11.2 1.2 0.38 10.6 0.8 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) BChl_A PF02327.12 gi|549455416|ref|YP_008604175.1| - 0.088 11.4 0.3 0.13 10.8 0.2 1.1 1 0 0 1 1 1 0 Bacteriochlorophyll A protein DUF1626 PF07788.6 gi|549455418|ref|YP_008604177.1| - 1.5e-27 95.1 1.0 4.6e-27 93.5 0.7 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) ERM PF00769.14 gi|549455418|ref|YP_008604177.1| - 2.5e-06 27.2 23.6 2.5e-06 27.2 16.4 2.1 1 1 1 2 2 2 2 Ezrin/radixin/moesin family IncA PF04156.9 gi|549455418|ref|YP_008604177.1| - 7.6e-06 25.6 53.3 0.0034 16.9 21.6 2.3 1 1 1 2 2 2 2 IncA protein Vac_Fusion PF02346.11 gi|549455418|ref|YP_008604177.1| - 4.7e-05 22.7 37.9 0.024 14.0 2.2 5.1 2 1 2 4 4 4 4 Chordopoxvirus fusion protein Tropomyosin PF00261.15 gi|549455418|ref|YP_008604177.1| - 0.00011 21.4 42.3 0.00024 20.2 29.3 1.6 1 1 0 1 1 1 1 Tropomyosin BLOC1_2 PF10046.4 gi|549455418|ref|YP_008604177.1| - 0.00078 19.5 17.2 0.043 13.9 3.9 3.5 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tropomyosin_1 PF12718.2 gi|549455418|ref|YP_008604177.1| - 0.00085 19.1 39.8 0.0046 16.7 24.5 2.6 1 1 1 2 2 2 1 Tropomyosin like EzrA PF06160.7 gi|549455418|ref|YP_008604177.1| - 0.0016 16.7 29.2 0.0067 14.6 9.3 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA ADIP PF11559.3 gi|549455418|ref|YP_008604177.1| - 0.0036 17.2 40.1 0.06 13.2 10.9 2.8 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding AAA_13 PF13166.1 gi|549455418|ref|YP_008604177.1| - 0.0075 14.7 11.7 0.0097 14.4 8.1 1.1 1 0 0 1 1 1 1 AAA domain DUF342 PF03961.8 gi|549455418|ref|YP_008604177.1| - 0.0076 14.7 27.3 0.023 13.1 8.6 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF342) GAS PF13851.1 gi|549455418|ref|YP_008604177.1| - 0.011 14.9 42.0 0.25 10.5 5.5 2.4 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Baculo_PEP_C PF04513.7 gi|549455418|ref|YP_008604177.1| - 0.022 14.5 0.8 0.26 11.0 0.0 2.4 2 1 1 3 3 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus RmuC PF02646.11 gi|549455418|ref|YP_008604177.1| - 0.06 12.1 21.7 0.25 10.1 6.0 3.1 1 1 2 3 3 3 0 RmuC family ATG16 PF08614.6 gi|549455418|ref|YP_008604177.1| - 0.086 12.6 37.8 1.6 8.5 11.7 2.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Nsp1_C PF05064.8 gi|549455418|ref|YP_008604177.1| - 0.13 11.9 31.7 0.35 10.5 3.6 3.6 2 1 2 4 4 3 0 Nsp1-like C-terminal region DUF3584 PF12128.3 gi|549455418|ref|YP_008604177.1| - 0.15 9.3 26.9 0.2 8.9 18.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF3552 PF12072.3 gi|549455418|ref|YP_008604177.1| - 0.2 10.8 48.9 0.21 10.7 8.8 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) XhlA PF10779.4 gi|549455418|ref|YP_008604177.1| - 0.24 11.3 25.0 0.7 9.8 2.2 3.8 1 1 1 3 3 3 0 Haemolysin XhlA TMF_DNA_bd PF12329.3 gi|549455418|ref|YP_008604177.1| - 0.32 10.8 35.6 0.66 9.8 6.0 3.4 1 1 4 5 5 5 0 TATA element modulatory factor 1 DNA binding DASH_Dam1 PF08653.5 gi|549455418|ref|YP_008604177.1| - 0.33 10.7 14.5 22 4.9 0.2 5.2 1 1 4 5 5 5 0 DASH complex subunit Dam1 Nup54 PF13874.1 gi|549455418|ref|YP_008604177.1| - 0.41 10.2 42.1 0.13 11.9 13.5 2.7 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 Jnk-SapK_ap_N PF09744.4 gi|549455418|ref|YP_008604177.1| - 0.55 10.2 47.4 1.2 9.1 9.7 3.5 1 1 2 3 3 3 0 JNK_SAPK-associated protein-1 V_ATPase_I PF01496.14 gi|549455418|ref|YP_008604177.1| - 0.88 7.3 32.5 2 6.1 15.0 2.5 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family DUF1465 PF07323.7 gi|549455418|ref|YP_008604177.1| - 1 8.9 30.3 7.4 6.1 2.6 4.5 1 1 3 4 4 4 0 Protein of unknown function (DUF1465) Spc7 PF08317.6 gi|549455418|ref|YP_008604177.1| - 1.1 7.8 28.1 1.8 7.1 14.6 2.3 1 1 1 2 2 2 0 Spc7 kinetochore protein FlaC_arch PF05377.6 gi|549455418|ref|YP_008604177.1| - 1.7 8.5 9.3 2.3 8.1 0.2 3.8 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) ORF6C PF10552.4 gi|549455418|ref|YP_008604177.1| - 1.8 8.3 18.3 3 7.6 1.6 4.6 1 1 3 4 4 4 0 ORF6C domain DUF2400 PF09674.5 gi|549455418|ref|YP_008604177.1| - 2 8.0 17.4 2.3 7.8 4.7 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2400) FadA PF09403.5 gi|549455418|ref|YP_008604177.1| - 2 8.4 37.8 2.8 7.9 7.0 3.9 1 1 2 3 3 3 0 Adhesion protein FadA CALCOCO1 PF07888.6 gi|549455418|ref|YP_008604177.1| - 2.8 6.1 31.1 4.2 5.5 21.6 1.2 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF724 PF05266.9 gi|549455418|ref|YP_008604177.1| - 3.2 7.3 33.5 9 5.8 7.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Prefoldin_2 PF01920.15 gi|549455418|ref|YP_008604177.1| - 3.9 7.2 41.0 3.9 7.3 3.9 4.6 1 1 6 7 7 7 0 Prefoldin subunit AAA_27 PF13514.1 gi|549455418|ref|YP_008604177.1| - 4.8 4.7 34.2 6.2 4.3 23.7 1.0 1 0 0 1 1 1 0 AAA domain DUF869 PF05911.6 gi|549455418|ref|YP_008604177.1| - 4.8 5.2 28.9 0.5 8.5 11.0 2.0 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) Fib_alpha PF08702.5 gi|549455418|ref|YP_008604177.1| - 5.6 7.0 19.8 4.8 7.2 8.5 2.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF972 PF06156.8 gi|549455418|ref|YP_008604177.1| - 8.6 6.7 32.1 1.5e+04 -12.1 22.2 3.5 1 1 0 1 1 0 0 Protein of unknown function (DUF972) PALP PF00291.20 gi|549455419|ref|YP_008604178.1| - 7.3e-60 202.7 0.2 1e-31 110.3 0.2 2.0 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme Pribosyltran PF00156.22 gi|549455419|ref|YP_008604178.1| - 0.038 13.7 0.7 0.73 9.5 0.0 2.5 2 0 0 2 2 2 0 Phosphoribosyl transferase domain Cys_Met_Meta_PP PF01053.15 gi|549455420|ref|YP_008604179.1| - 2.1e-157 523.3 0.0 2.3e-157 523.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|549455420|ref|YP_008604179.1| - 1.6e-10 40.5 0.3 1e-09 37.9 0.0 2.0 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|549455420|ref|YP_008604179.1| - 9e-10 38.0 0.0 1.2e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|549455420|ref|YP_008604179.1| - 1.9e-08 33.4 0.0 4.5e-08 32.2 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|549455420|ref|YP_008604179.1| - 4.9e-07 29.1 0.0 7.5e-07 28.5 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.11 gi|549455420|ref|YP_008604179.1| - 0.0077 14.9 0.1 0.014 14.0 0.0 1.4 2 0 0 2 2 2 1 Glycine cleavage system P-protein Oxidored_nitro PF00148.14 gi|549455420|ref|YP_008604179.1| - 0.094 11.3 0.1 0.25 9.9 0.1 2.0 2 1 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase DUF2276 PF10040.4 gi|549455421|ref|YP_008604180.1| - 3.8e-19 69.0 0.4 5.4e-19 68.5 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Cas_Csa4 PF09703.5 gi|549455422|ref|YP_008604181.1| - 2.8e-130 434.5 0.0 3.3e-130 434.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa4) DUF4131 PF13567.1 gi|549455422|ref|YP_008604181.1| - 0.019 14.3 0.0 4.6 6.6 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) OCIA PF07051.6 gi|549455422|ref|YP_008604181.1| - 0.039 13.3 0.1 0.073 12.4 0.1 1.4 1 0 0 1 1 1 0 Ovarian carcinoma immunoreactive antigen (OCIA) HD PF01966.17 gi|549455423|ref|YP_008604182.1| - 0.045 13.7 0.1 0.18 11.8 0.0 2.1 2 1 0 2 2 2 0 HD domain DEAD PF00270.24 gi|549455424|ref|YP_008604183.1| - 8.2e-14 51.4 0.0 1.7e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|549455424|ref|YP_008604183.1| - 0.0002 21.2 0.0 0.00046 20.0 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|549455424|ref|YP_008604183.1| - 0.00071 19.3 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Cas_Cas5d PF09704.5 gi|549455425|ref|YP_008604184.1| - 2.1e-11 43.8 0.0 2.8e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.11 gi|549455426|ref|YP_008604185.1| - 2.6e-66 223.2 0.0 3e-66 223.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 TrmB PF01978.14 gi|549455428|ref|YP_008604187.1| - 1.1e-05 25.0 0.5 2e-05 24.1 0.3 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|549455428|ref|YP_008604187.1| - 0.00017 21.1 0.7 0.00036 20.1 0.5 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|549455428|ref|YP_008604187.1| - 0.00093 19.4 0.5 0.0016 18.6 0.3 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|549455428|ref|YP_008604187.1| - 0.00093 18.8 0.2 0.0016 18.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HxlR PF01638.12 gi|549455428|ref|YP_008604187.1| - 0.0022 17.5 0.3 0.0052 16.3 0.2 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Rrf2 PF02082.15 gi|549455428|ref|YP_008604187.1| - 0.0022 18.0 0.2 0.004 17.2 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|549455428|ref|YP_008604187.1| - 0.0039 16.9 0.1 0.0073 16.0 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain SelB-wing_2 PF09106.6 gi|549455428|ref|YP_008604187.1| - 0.069 13.0 2.0 0.14 12.0 0.3 2.1 2 0 0 2 2 2 0 Elongation factor SelB, winged helix GntR PF00392.16 gi|549455428|ref|YP_008604187.1| - 0.19 11.1 2.0 0.36 10.2 0.5 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Cas_Cas4 PF01930.12 gi|549455429|ref|YP_008604188.1| - 1.2e-12 48.0 0.0 2e-12 47.3 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|549455429|ref|YP_008604188.1| - 3.9e-10 39.5 0.2 3.7e-08 33.0 0.0 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|549455429|ref|YP_008604188.1| - 1.3e-05 24.5 0.0 1.9e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) CRISPR_Cas2 PF09827.4 gi|549455430|ref|YP_008604189.1| - 1e-13 51.2 0.2 1.2e-13 50.9 0.2 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 CutC PF03932.9 gi|549455430|ref|YP_008604189.1| - 0.014 14.6 0.0 0.015 14.5 0.0 1.1 1 0 0 1 1 1 0 CutC family DUF4385 PF14328.1 gi|549455430|ref|YP_008604189.1| - 0.064 13.1 0.0 0.078 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4385) DUF4616 PF15394.1 gi|549455430|ref|YP_008604189.1| - 0.099 11.6 0.1 0.11 11.4 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4616) PaaX_C PF08223.6 gi|549455430|ref|YP_008604189.1| - 0.1 12.2 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 PaaX-like protein C-terminal domain Cas_Cas1 PF01867.11 gi|549455431|ref|YP_008604190.1| - 1.2e-63 214.8 0.0 1.4e-63 214.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Gly_rich_SFCGS PF14272.1 gi|549455431|ref|YP_008604190.1| - 0.24 11.2 1.5 0.4 10.5 0.1 2.0 3 0 0 3 3 3 0 Glycine-rich SFCGS DUF911 PF06023.7 gi|549455432|ref|YP_008604191.1| - 1.9e-79 266.9 0.0 1.5e-55 188.4 0.0 2.0 1 1 1 2 2 2 2 Archaeal protein of unknown function (DUF911) Cas_DxTHG PF09455.5 gi|549455435|ref|YP_008604194.1| - 8.8e-14 51.4 0.0 2.4e-12 46.7 0.0 2.1 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Abhydrolase_5 PF12695.2 gi|549455437|ref|YP_008604196.1| - 2.2e-13 50.1 0.1 4.9e-13 49.0 0.1 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|549455437|ref|YP_008604196.1| - 2e-12 47.5 5.0 6e-12 45.9 3.5 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|549455437|ref|YP_008604196.1| - 2.9e-05 22.7 0.0 4.3e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.3 gi|549455437|ref|YP_008604196.1| - 0.00012 21.9 0.1 0.00027 20.7 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S9 PF00326.16 gi|549455437|ref|YP_008604196.1| - 0.00036 19.8 0.0 0.00065 18.9 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|549455437|ref|YP_008604196.1| - 0.0028 17.2 0.1 0.0039 16.7 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.13 gi|549455437|ref|YP_008604196.1| - 0.0037 16.5 0.0 0.1 11.8 0.0 2.3 2 0 0 2 2 2 1 Dienelactone hydrolase family DUF2048 PF09752.4 gi|549455437|ref|YP_008604196.1| - 0.014 14.2 2.9 0.023 13.5 2.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Peptidase_S15 PF02129.13 gi|549455437|ref|YP_008604196.1| - 0.038 13.3 0.2 0.077 12.4 0.1 1.5 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_3 PF07859.8 gi|549455437|ref|YP_008604196.1| - 0.056 13.0 0.1 0.14 11.7 0.1 1.6 2 0 0 2 2 2 0 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|549455437|ref|YP_008604196.1| - 0.22 11.1 1.4 0.43 10.2 0.9 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal FtsX PF02687.16 gi|549455439|ref|YP_008604198.1| - 0.0098 15.6 4.7 0.0098 15.6 3.3 5.1 4 2 1 5 5 5 2 FtsX-like permease family ABC_tran PF00005.22 gi|549455440|ref|YP_008604199.1| - 3.9e-31 108.1 0.0 6.9e-31 107.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455440|ref|YP_008604199.1| - 3.3e-13 50.2 0.0 4.9e-07 29.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain T2SE PF00437.15 gi|549455440|ref|YP_008604199.1| - 1.1e-05 24.5 0.2 0.018 13.9 0.0 2.2 2 0 0 2 2 2 2 Type II/IV secretion system protein SMC_N PF02463.14 gi|549455440|ref|YP_008604199.1| - 1.4e-05 24.4 0.0 0.0087 15.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|549455440|ref|YP_008604199.1| - 0.00054 19.1 0.0 0.09 11.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|549455440|ref|YP_008604199.1| - 0.00078 19.1 4.4 0.004 16.8 0.4 3.1 2 1 1 3 3 3 1 Part of AAA domain DUF258 PF03193.11 gi|549455440|ref|YP_008604199.1| - 0.00078 18.6 0.0 0.0014 17.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|549455440|ref|YP_008604199.1| - 0.0015 18.0 0.0 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|549455440|ref|YP_008604199.1| - 0.0016 18.4 0.5 0.0032 17.4 0.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|549455440|ref|YP_008604199.1| - 0.002 18.9 0.3 0.0073 17.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|549455440|ref|YP_008604199.1| - 0.0028 17.1 0.1 0.0086 15.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|549455440|ref|YP_008604199.1| - 0.0057 16.1 0.0 0.017 14.5 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|549455440|ref|YP_008604199.1| - 0.0065 16.1 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|549455440|ref|YP_008604199.1| - 0.0075 16.4 0.3 0.039 14.0 0.0 2.3 2 1 1 3 3 2 1 AAA domain AAA_10 PF12846.2 gi|549455440|ref|YP_008604199.1| - 0.01 15.2 0.9 0.043 13.2 0.0 2.1 2 1 0 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|549455440|ref|YP_008604199.1| - 0.016 15.5 0.4 0.082 13.2 0.0 2.4 3 1 0 3 3 2 0 AAA domain MobB PF03205.9 gi|549455440|ref|YP_008604199.1| - 0.017 14.8 0.8 0.046 13.4 0.0 2.1 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|549455440|ref|YP_008604199.1| - 0.02 14.5 0.1 0.073 12.7 0.1 1.8 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|549455440|ref|YP_008604199.1| - 0.029 13.9 3.2 0.057 12.9 0.0 2.6 3 1 0 3 3 2 0 AAA domain NTPase_1 PF03266.10 gi|549455440|ref|YP_008604199.1| - 0.03 14.0 0.0 0.42 10.2 0.0 2.4 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.1 gi|549455440|ref|YP_008604199.1| - 0.031 14.2 0.3 0.11 12.4 0.0 2.1 3 0 0 3 3 2 0 AAA domain AAA PF00004.24 gi|549455440|ref|YP_008604199.1| - 0.056 13.6 0.1 0.67 10.1 0.0 2.6 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|549455440|ref|YP_008604199.1| - 0.065 12.3 0.8 0.18 10.9 0.0 2.1 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI RecA PF00154.16 gi|549455440|ref|YP_008604199.1| - 0.065 12.2 0.1 0.11 11.5 0.1 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein ABC_ATPase PF09818.4 gi|549455440|ref|YP_008604199.1| - 0.074 11.6 0.1 0.12 10.8 0.0 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|549455440|ref|YP_008604199.1| - 0.075 12.9 0.0 0.17 11.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.1 gi|549455440|ref|YP_008604199.1| - 0.081 12.8 0.1 0.26 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|549455440|ref|YP_008604199.1| - 0.082 13.2 0.3 0.082 13.2 0.2 1.6 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.1 gi|549455440|ref|YP_008604199.1| - 0.1 12.1 0.1 0.69 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|549455440|ref|YP_008604199.1| - 0.11 12.1 0.1 0.25 10.9 0.0 1.6 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|549455440|ref|YP_008604199.1| - 0.22 10.3 0.4 0.64 8.8 0.1 1.8 2 0 0 2 2 2 0 NB-ARC domain KaiC PF06745.8 gi|549455440|ref|YP_008604199.1| - 0.3 10.1 1.7 5 6.1 0.1 2.9 3 1 1 4 4 4 0 KaiC ABC_tran PF00005.22 gi|549455441|ref|YP_008604200.1| - 1.4e-24 86.9 0.0 2e-24 86.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455441|ref|YP_008604200.1| - 2.9e-15 57.0 0.0 1.8e-07 31.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|549455441|ref|YP_008604200.1| - 0.00079 18.7 0.0 0.51 9.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|549455441|ref|YP_008604200.1| - 0.0054 17.0 0.0 0.0076 16.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|549455441|ref|YP_008604200.1| - 0.015 15.0 0.1 0.042 13.5 0.1 1.9 1 0 0 1 1 1 0 Part of AAA domain AAA_29 PF13555.1 gi|549455441|ref|YP_008604200.1| - 0.052 13.0 0.0 0.092 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|549455441|ref|YP_008604200.1| - 0.054 13.0 0.0 0.084 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|549455441|ref|YP_008604200.1| - 0.056 12.8 0.1 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|549455441|ref|YP_008604200.1| - 0.07 13.1 0.0 0.1 12.5 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.14 gi|549455441|ref|YP_008604200.1| - 0.1 12.0 0.1 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|549455441|ref|YP_008604200.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC2_membrane_3 PF12698.2 gi|549455442|ref|YP_008604201.1| - 1.4e-15 57.2 6.3 1.8e-15 56.8 4.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|549455442|ref|YP_008604201.1| - 2.7e-12 46.1 3.4 4.7e-12 45.3 2.4 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|549455442|ref|YP_008604201.1| - 0.0006 19.0 12.6 0.0012 18.0 8.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein Hemerythrin PF01814.18 gi|549455445|ref|YP_008604204.1| - 8.9e-18 64.7 4.4 8.9e-18 64.7 3.0 1.7 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain Lactamase_B PF00753.22 gi|549455446|ref|YP_008604205.1| - 4.4e-22 78.6 2.3 6.8e-22 78.0 1.6 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|549455446|ref|YP_008604205.1| - 0.00082 18.9 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|549455446|ref|YP_008604205.1| - 0.1 12.3 0.0 0.13 11.9 0.0 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Cation_efflux PF01545.16 gi|549455448|ref|YP_008604207.1| - 6.4e-09 35.2 0.0 7.4e-09 35.0 0.0 1.0 1 0 0 1 1 1 1 Cation efflux family LytR_C PF13399.1 gi|549455448|ref|YP_008604207.1| - 0.059 13.7 0.0 0.14 12.5 0.0 1.6 1 1 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator 2-Hacid_dh_C PF02826.14 gi|549455449|ref|YP_008604208.1| - 8.5e-35 119.4 0.0 1.1e-34 119.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|549455449|ref|YP_008604208.1| - 1.2e-15 57.1 0.0 1.6e-15 56.7 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DAO PF01266.19 gi|549455450|ref|YP_008604209.1| - 7.1e-50 169.8 1.0 8.4e-50 169.6 0.7 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|549455450|ref|YP_008604209.1| - 4.2e-06 26.6 1.8 1.1e-05 25.3 1.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|549455450|ref|YP_008604209.1| - 5.2e-06 26.6 0.1 0.00014 22.0 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|549455450|ref|YP_008604209.1| - 7.5e-06 25.9 0.1 0.0037 17.1 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|549455450|ref|YP_008604209.1| - 0.0001 21.2 0.6 0.00016 20.6 0.2 1.4 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|549455450|ref|YP_008604209.1| - 0.00026 20.1 0.1 0.00046 19.3 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|549455450|ref|YP_008604209.1| - 0.00083 19.7 0.6 0.15 12.5 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|549455450|ref|YP_008604209.1| - 0.096 11.1 0.1 0.85 8.0 0.2 2.1 2 0 0 2 2 2 0 HI0933-like protein NTP_transf_2 PF01909.18 gi|549455451|ref|YP_008604210.1| - 2.3e-13 50.2 0.0 3.3e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain BolA PF01722.13 gi|549455451|ref|YP_008604210.1| - 0.031 14.2 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 BolA-like protein Cas_Cas5d PF09704.5 gi|549455451|ref|YP_008604210.1| - 0.068 12.7 0.0 0.098 12.2 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) HEPN PF05168.9 gi|549455452|ref|YP_008604211.1| - 6.2e-33 113.1 0.0 7.6e-33 112.9 0.0 1.1 1 0 0 1 1 1 1 HEPN domain QRPTase_C PF01729.14 gi|549455453|ref|YP_008604212.1| - 8.9e-24 83.8 0.0 1.2e-23 83.4 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|549455453|ref|YP_008604212.1| - 2.2e-05 24.1 0.0 5.6e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NIR_SIR_ferr PF03460.12 gi|549455453|ref|YP_008604212.1| - 0.054 13.1 0.1 0.8 9.3 0.0 2.6 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain BtpA PF03437.10 gi|549455453|ref|YP_008604212.1| - 0.065 12.4 0.0 0.099 11.8 0.0 1.2 1 0 0 1 1 1 0 BtpA family Ribosomal_S2 PF00318.15 gi|549455453|ref|YP_008604212.1| - 0.098 11.8 0.0 0.28 10.3 0.0 1.6 2 0 0 2 2 2 0 Ribosomal protein S2 RibD_C PF01872.12 gi|549455456|ref|YP_008604215.1| - 8.5e-40 136.5 0.0 1e-39 136.2 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain HD PF01966.17 gi|549455458|ref|YP_008604217.1| - 0.00019 21.4 4.7 0.00059 19.8 1.7 2.9 2 1 0 2 2 2 1 HD domain Hist_deacetyl PF00850.14 gi|549455460|ref|YP_008604219.1| - 1.1e-39 136.6 0.0 1.3e-39 136.3 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DUF2807 PF10988.3 gi|549455461|ref|YP_008604220.1| - 0.0081 15.7 3.3 0.21 11.1 0.3 3.3 2 1 0 2 2 2 1 Protein of unknown function (DUF2807) DUF4369 PF14289.1 gi|549455461|ref|YP_008604220.1| - 0.012 15.6 0.0 1.1 9.2 0.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4369) Molybdopterin PF00384.17 gi|549455462|ref|YP_008604221.1| - 6.5e-134 446.9 0.0 7.9e-134 446.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|549455462|ref|YP_008604221.1| - 4.8e-19 68.2 0.1 9.1e-19 67.3 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.4 gi|549455462|ref|YP_008604221.1| - 0.001 18.9 4.1 0.0028 17.5 2.9 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.1 gi|549455463|ref|YP_008604222.1| - 3e-37 126.4 8.0 3e-37 126.4 5.6 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Nitr_red_bet_C PF14711.1 gi|549455463|ref|YP_008604222.1| - 4.3e-24 83.8 0.0 6.9e-24 83.1 0.0 1.3 1 0 0 1 1 1 1 Respiratory nitrate reductase beta C-terminal Fer4_10 PF13237.1 gi|549455463|ref|YP_008604222.1| - 6.9e-08 32.1 17.1 1.6e-05 24.6 3.4 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|549455463|ref|YP_008604222.1| - 1.3e-06 28.6 18.2 3.3e-05 24.1 4.3 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|549455463|ref|YP_008604222.1| - 1.5e-06 27.7 17.2 0.01 15.6 1.1 4.1 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|549455463|ref|YP_008604222.1| - 0.0024 18.0 21.0 0.18 12.1 6.0 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|549455463|ref|YP_008604222.1| - 0.0026 18.0 4.7 0.12 12.8 0.1 3.1 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|549455463|ref|YP_008604222.1| - 0.0053 17.3 13.9 0.096 13.2 1.7 3.6 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|549455463|ref|YP_008604222.1| - 0.014 15.2 18.6 0.52 10.2 1.0 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|549455463|ref|YP_008604222.1| - 0.016 15.2 11.4 0.37 10.8 0.0 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|549455463|ref|YP_008604222.1| - 0.065 12.8 19.3 0.097 12.3 1.5 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|549455463|ref|YP_008604222.1| - 0.12 12.2 18.9 0.086 12.7 0.9 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|549455463|ref|YP_008604222.1| - 0.12 12.7 15.8 0.48 10.8 0.2 3.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fusion_gly PF00523.13 gi|549455463|ref|YP_008604222.1| - 0.27 9.2 0.1 0.38 8.7 0.1 1.1 1 0 0 1 1 1 0 Fusion glycoprotein F0 Fer4_3 PF12798.2 gi|549455463|ref|YP_008604222.1| - 1 10.0 32.6 0.42 11.2 2.6 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|549455463|ref|YP_008604222.1| - 3 7.7 6.3 3.8 7.4 0.6 2.9 3 0 0 3 3 3 0 Divergent 4Fe-4S mono-cluster EB_dh PF09459.5 gi|549455464|ref|YP_008604223.1| - 1.7e-26 93.2 0.0 3.5e-26 92.2 0.0 1.5 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Nitrate_red_del PF02613.10 gi|549455466|ref|YP_008604225.1| - 2.1e-19 69.7 0.3 2.7e-19 69.3 0.2 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit ABC_tran PF00005.22 gi|549455467|ref|YP_008604226.1| - 5.7e-31 107.6 0.0 8.4e-31 107.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455467|ref|YP_008604226.1| - 4.2e-18 66.3 0.1 1.6e-16 61.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|549455467|ref|YP_008604226.1| - 8.3e-07 29.5 0.2 1.2e-06 28.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|549455467|ref|YP_008604226.1| - 1e-06 28.1 0.1 1e-05 24.8 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|549455467|ref|YP_008604226.1| - 2.7e-05 23.4 0.1 0.00029 19.9 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|549455467|ref|YP_008604226.1| - 5.2e-05 22.7 0.1 9.6e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|549455467|ref|YP_008604226.1| - 0.00038 20.5 0.0 0.00063 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|549455467|ref|YP_008604226.1| - 0.00074 19.7 0.0 0.0012 19.0 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|549455467|ref|YP_008604226.1| - 0.00075 18.9 0.0 0.0011 18.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|549455467|ref|YP_008604226.1| - 0.0015 17.2 0.2 0.028 12.9 0.1 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class UPF0079 PF02367.12 gi|549455467|ref|YP_008604226.1| - 0.0021 17.6 0.1 0.0053 16.3 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|549455467|ref|YP_008604226.1| - 0.0022 18.1 4.1 0.0039 17.3 0.6 2.3 2 1 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|549455467|ref|YP_008604226.1| - 0.0029 17.3 0.0 0.012 15.3 0.0 2.0 2 1 0 2 2 2 1 Part of AAA domain DUF258 PF03193.11 gi|549455467|ref|YP_008604226.1| - 0.004 16.3 0.0 0.0063 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|549455467|ref|YP_008604226.1| - 0.0043 16.6 0.2 0.011 15.3 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|549455467|ref|YP_008604226.1| - 0.0051 17.6 1.2 0.028 15.2 0.3 2.2 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|549455467|ref|YP_008604226.1| - 0.0074 16.1 0.1 0.036 13.9 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|549455467|ref|YP_008604226.1| - 0.013 15.2 0.2 0.032 13.9 0.2 1.8 1 1 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|549455467|ref|YP_008604226.1| - 0.023 14.1 0.4 1.1 8.6 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|549455467|ref|YP_008604226.1| - 0.024 14.5 0.1 0.31 10.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|549455467|ref|YP_008604226.1| - 0.046 13.6 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|549455467|ref|YP_008604226.1| - 0.052 13.0 0.0 0.087 12.3 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|549455467|ref|YP_008604226.1| - 0.053 13.1 0.1 0.094 12.3 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|549455467|ref|YP_008604226.1| - 0.056 13.3 0.3 0.16 11.8 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|549455467|ref|YP_008604226.1| - 0.058 13.1 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) cobW PF02492.14 gi|549455467|ref|YP_008604226.1| - 0.063 12.7 0.0 0.098 12.0 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|549455467|ref|YP_008604226.1| - 0.067 12.0 0.3 0.11 11.4 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2813 PF11398.3 gi|549455467|ref|YP_008604226.1| - 0.073 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_24 PF13479.1 gi|549455467|ref|YP_008604226.1| - 0.079 12.5 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|549455467|ref|YP_008604226.1| - 0.13 11.7 0.2 0.28 10.6 0.1 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.12 gi|549455467|ref|YP_008604226.1| - 0.14 11.5 0.4 2.4 7.5 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|549455467|ref|YP_008604226.1| - 0.14 10.9 0.1 0.3 9.8 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain MutS_V PF00488.16 gi|549455467|ref|YP_008604226.1| - 0.15 11.4 0.1 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 MutS domain V Peripla_BP_6 PF13458.1 gi|549455468|ref|YP_008604227.1| - 2.4e-59 201.4 0.4 2.9e-59 201.1 0.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|549455468|ref|YP_008604227.1| - 0.00018 20.4 0.0 0.00043 19.1 0.0 1.6 1 1 0 1 1 1 1 Periplasmic binding protein domain BPD_transp_2 PF02653.11 gi|549455469|ref|YP_008604228.1| - 1.1e-31 109.7 38.3 1.1e-31 109.7 26.5 2.0 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|549455470|ref|YP_008604229.1| - 1.8e-27 95.9 36.5 2.2e-27 95.6 25.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component AMP-binding PF00501.23 gi|549455471|ref|YP_008604230.1| - 1.5e-81 273.9 0.0 1.9e-81 273.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Herpes_UL36 PF03586.8 gi|549455471|ref|YP_008604230.1| - 0.021 13.9 0.0 0.22 10.5 0.0 2.4 2 0 0 2 2 2 0 Herpesvirus UL36 tegument protein ABC_tran PF00005.22 gi|549455472|ref|YP_008604231.1| - 4e-30 104.9 0.0 5.3e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455472|ref|YP_008604231.1| - 4.9e-09 36.5 0.0 7.6e-05 22.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|549455472|ref|YP_008604231.1| - 6.8e-08 32.0 0.8 1.2e-07 31.1 0.0 1.9 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|549455472|ref|YP_008604231.1| - 0.0011 19.2 0.1 0.0018 18.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|549455472|ref|YP_008604231.1| - 0.0013 18.2 0.0 0.0025 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|549455472|ref|YP_008604231.1| - 0.0094 15.1 0.1 0.016 14.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|549455472|ref|YP_008604231.1| - 0.013 15.4 0.6 0.043 13.7 0.4 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|549455472|ref|YP_008604231.1| - 0.018 14.7 0.1 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|549455472|ref|YP_008604231.1| - 0.041 13.4 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|549455472|ref|YP_008604231.1| - 0.048 12.8 1.1 0.11 11.6 0.1 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.20 gi|549455472|ref|YP_008604231.1| - 0.052 13.0 0.0 0.065 12.7 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|549455472|ref|YP_008604231.1| - 0.078 12.0 0.0 1 8.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.14 gi|549455472|ref|YP_008604231.1| - 0.11 11.9 2.9 0.42 10.0 0.1 2.4 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|549455472|ref|YP_008604231.1| - 0.14 11.5 0.6 1.9 7.8 0.1 2.3 2 1 1 3 3 3 0 AAA-like domain Miro PF08477.8 gi|549455472|ref|YP_008604231.1| - 0.16 12.5 0.2 0.32 11.4 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein KdpD PF02702.12 gi|549455472|ref|YP_008604231.1| - 0.17 10.9 1.1 0.97 8.5 0.7 2.0 1 1 1 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain AAA_16 PF13191.1 gi|549455472|ref|YP_008604231.1| - 0.19 11.7 0.3 0.37 10.7 0.1 1.5 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|549455472|ref|YP_008604231.1| - 1.8 7.0 7.0 4.4 5.7 0.7 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AMP-binding PF00501.23 gi|549455473|ref|YP_008604232.1| - 7.2e-59 199.2 0.0 9.3e-59 198.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|549455473|ref|YP_008604232.1| - 7.1e-06 26.8 0.2 1.7e-05 25.6 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4129 PF13559.1 gi|549455474|ref|YP_008604233.1| - 1.7e-06 27.9 7.6 1.7e-06 27.9 5.3 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) AAA_3 PF07726.6 gi|549455476|ref|YP_008604235.1| - 3.5e-64 214.2 0.0 5.1e-64 213.7 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|549455476|ref|YP_008604235.1| - 3.9e-17 62.2 0.0 6.4e-17 61.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|549455476|ref|YP_008604235.1| - 9e-07 29.1 0.0 1.7e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|549455476|ref|YP_008604235.1| - 1.6e-06 27.1 0.0 5e-06 25.5 0.0 1.7 2 0 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|549455476|ref|YP_008604235.1| - 1.8e-05 24.2 0.0 0.00016 21.2 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|549455476|ref|YP_008604235.1| - 4.1e-05 22.7 0.1 0.00032 19.8 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|549455476|ref|YP_008604235.1| - 0.0012 18.8 0.2 0.0047 16.9 0.0 1.9 2 1 0 3 3 3 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|549455476|ref|YP_008604235.1| - 0.0014 17.7 0.9 0.096 11.8 0.2 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|549455476|ref|YP_008604235.1| - 0.0084 16.9 0.0 0.025 15.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|549455476|ref|YP_008604235.1| - 0.04 13.6 0.1 0.12 12.1 0.1 1.9 1 0 0 1 1 1 0 Part of AAA domain DUF58 PF01882.13 gi|549455477|ref|YP_008604236.1| - 1.2e-21 76.6 0.0 3.4e-21 75.1 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|549455477|ref|YP_008604236.1| - 0.0049 16.9 0.0 0.0078 16.3 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain Polysacc_deac_1 PF01522.16 gi|549455477|ref|YP_008604236.1| - 0.17 11.5 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase IncA PF04156.9 gi|549455479|ref|YP_008604238.1| - 0.058 12.9 8.6 0.063 12.8 5.9 1.0 1 0 0 1 1 1 0 IncA protein TAT_signal PF10518.4 gi|549455479|ref|YP_008604238.1| - 0.097 12.7 0.6 0.097 12.7 0.4 2.3 2 1 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF1206 PF06724.6 gi|549455479|ref|YP_008604238.1| - 2.4 7.9 8.5 0.42 10.4 1.7 2.0 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) DUF3188 PF11384.3 gi|549455479|ref|YP_008604238.1| - 7.5 6.2 8.1 3.4 7.2 1.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3188) tRNA_anti-codon PF01336.20 gi|549455481|ref|YP_008604240.1| - 5.1e-09 35.8 0.1 7.6e-09 35.3 0.1 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain GRP PF07172.6 gi|549455481|ref|YP_008604240.1| - 0.012 16.0 2.8 0.02 15.3 1.9 1.4 1 0 0 1 1 1 0 Glycine rich protein family Acetyltransf_1 PF00583.19 gi|549455482|ref|YP_008604241.1| - 1.5e-12 47.3 0.2 2.6e-12 46.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|549455482|ref|YP_008604241.1| - 2.1e-11 44.0 0.0 2.6e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|549455482|ref|YP_008604241.1| - 2.9e-09 37.2 0.0 3.8e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|549455482|ref|YP_008604241.1| - 1.9e-05 24.7 0.3 5.8e-05 23.1 0.0 1.9 2 1 1 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|549455482|ref|YP_008604241.1| - 2.4e-05 24.4 0.0 3.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|549455482|ref|YP_008604241.1| - 4.9e-05 23.0 0.1 8.7e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|549455482|ref|YP_008604241.1| - 0.0029 17.4 0.0 0.0041 17.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Rad50_zn_hook PF04423.9 gi|549455482|ref|YP_008604241.1| - 0.13 11.7 0.1 0.33 10.4 0.1 1.7 1 0 0 1 1 1 0 Rad50 zinc hook motif Radical_SAM PF04055.16 gi|549455483|ref|YP_008604242.1| - 2.3e-07 31.1 0.1 3.1e-06 27.4 0.1 2.6 2 1 0 2 2 2 1 Radical SAM superfamily Hydantoinase_A PF01968.13 gi|549455485|ref|YP_008604244.1| - 2.7e-90 302.4 1.5 3.4e-90 302.0 1.0 1.1 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|549455485|ref|YP_008604244.1| - 6e-35 120.3 0.0 2.8e-34 118.1 0.0 2.1 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region DUF294 PF03445.8 gi|549455485|ref|YP_008604244.1| - 0.1 12.2 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Hydantoinase_B PF02538.9 gi|549455486|ref|YP_008604245.1| - 2.6e-159 530.8 0.0 3.1e-159 530.5 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase ABM PF03992.11 gi|549455487|ref|YP_008604246.1| - 4.4e-15 55.4 2.2 5.3e-15 55.2 1.5 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Dehydratase_hem PF13816.1 gi|549455487|ref|YP_008604246.1| - 0.0044 16.1 0.0 0.0044 16.1 0.0 1.0 1 0 0 1 1 1 1 Haem-containing dehydratase Ribosomal_L14e PF01929.12 gi|549455487|ref|YP_008604246.1| - 0.092 13.1 0.4 0.14 12.5 0.3 1.2 1 0 0 1 1 1 0 Ribosomal protein L14 DUF3291 PF11695.3 gi|549455487|ref|YP_008604246.1| - 0.11 11.8 0.4 0.17 11.3 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3291) DUF1330 PF07045.6 gi|549455487|ref|YP_008604246.1| - 0.2 11.5 1.2 0.65 9.9 0.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1330) Peptidase_M42 PF05343.9 gi|549455488|ref|YP_008604247.1| - 1.1e-85 286.9 0.0 1.2e-85 286.8 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|549455488|ref|YP_008604247.1| - 1.1e-12 47.8 0.1 1.7e-12 47.2 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|549455488|ref|YP_008604247.1| - 1.3e-10 41.3 0.1 2.8e-09 36.9 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|549455488|ref|YP_008604247.1| - 0.00058 18.4 0.0 0.00077 18.0 0.0 1.2 1 0 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) DAO PF01266.19 gi|549455489|ref|YP_008604248.1| - 1.8e-14 53.4 14.7 3.3e-13 49.2 10.2 2.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|549455489|ref|YP_008604248.1| - 3.2e-14 52.8 5.1 1.7e-13 50.4 3.6 2.1 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|549455489|ref|YP_008604248.1| - 8.7e-11 41.6 2.0 1.7e-10 40.7 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|549455489|ref|YP_008604248.1| - 3.7e-08 32.8 1.6 2.2e-07 30.3 0.4 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|549455489|ref|YP_008604248.1| - 6e-07 28.7 0.3 1.5e-06 27.5 0.2 1.5 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|549455489|ref|YP_008604248.1| - 2.2e-06 26.7 1.1 4.7e-05 22.4 0.3 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|549455489|ref|YP_008604248.1| - 5.9e-06 25.3 7.4 1.1e-05 24.5 0.9 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|549455489|ref|YP_008604248.1| - 7.3e-05 21.9 1.2 0.00014 21.0 0.8 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|549455489|ref|YP_008604248.1| - 7.8e-05 21.3 1.0 0.0004 18.9 0.2 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|549455489|ref|YP_008604248.1| - 8.4e-05 22.5 0.0 0.00017 21.5 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|549455489|ref|YP_008604248.1| - 0.00045 20.3 0.1 0.01 15.8 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|549455489|ref|YP_008604248.1| - 0.00079 19.7 0.4 0.00079 19.7 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|549455489|ref|YP_008604248.1| - 0.0019 17.2 0.5 0.0062 15.5 0.0 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|549455489|ref|YP_008604248.1| - 0.016 13.8 0.4 0.016 13.8 0.3 1.7 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.13 gi|549455489|ref|YP_008604248.1| - 7.5 6.1 6.1 0.51 9.9 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF996 PF06195.8 gi|549455490|ref|YP_008604249.1| - 0.0025 17.8 21.0 0.0025 17.8 14.6 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF996) Topoisom_bac PF01131.15 gi|549455492|ref|YP_008604251.1| - 1.1e-80 271.5 0.0 3.5e-77 259.9 0.0 2.3 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|549455492|ref|YP_008604251.1| - 2.4e-20 72.3 0.0 5.8e-20 71.1 0.0 1.7 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|549455492|ref|YP_008604251.1| - 7.8e-12 45.0 0.0 1.7e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|549455492|ref|YP_008604251.1| - 2.1e-09 37.1 0.0 4.6e-05 23.2 0.0 3.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_25 PF13481.1 gi|549455492|ref|YP_008604251.1| - 0.00059 19.2 0.6 0.017 14.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain zf-ribbon_3 PF13248.1 gi|549455492|ref|YP_008604251.1| - 0.0084 15.2 0.6 0.0084 15.2 0.4 2.7 3 0 0 3 3 3 1 zinc-ribbon domain DZR PF12773.2 gi|549455492|ref|YP_008604251.1| - 0.02 14.7 4.7 0.21 11.4 0.3 2.4 2 0 0 2 2 2 0 Double zinc ribbon Terminase_6 PF03237.10 gi|549455492|ref|YP_008604251.1| - 0.032 13.0 0.0 0.08 11.6 0.0 1.7 1 0 0 1 1 1 0 Terminase-like family AAA_22 PF13401.1 gi|549455492|ref|YP_008604251.1| - 0.043 13.9 0.0 0.21 11.7 0.0 2.2 1 0 0 1 1 1 0 AAA domain OrfB_Zn_ribbon PF07282.6 gi|549455492|ref|YP_008604251.1| - 0.063 12.9 5.9 1.2 8.8 0.5 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|549455492|ref|YP_008604251.1| - 0.067 12.8 0.1 0.067 12.8 0.0 3.7 4 0 0 4 4 3 0 Uncharacterised protein family UPF0547 ResIII PF04851.10 gi|549455492|ref|YP_008604251.1| - 0.069 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit YtxH PF12732.2 gi|549455492|ref|YP_008604251.1| - 0.07 13.4 0.2 3.6 8.0 0.0 2.5 2 0 0 2 2 2 0 YtxH-like protein DUF35_N PF12172.3 gi|549455492|ref|YP_008604251.1| - 0.2 11.6 9.2 0.28 11.1 0.9 3.2 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.1 gi|549455492|ref|YP_008604251.1| - 0.21 11.1 12.8 0.025 14.0 1.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|549455492|ref|YP_008604251.1| - 0.34 10.9 8.0 9.6 6.2 2.1 2.9 2 1 0 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|549455492|ref|YP_008604251.1| - 0.61 9.7 4.3 0.87 9.2 0.0 2.7 3 0 0 3 3 3 0 Hydrogenase expression/synthesis hypA family DUF1272 PF06906.6 gi|549455492|ref|YP_008604251.1| - 0.64 9.9 2.8 16 5.4 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) AAA_17 PF13207.1 gi|549455492|ref|YP_008604251.1| - 1.9 9.3 7.9 76 4.1 0.2 4.9 5 0 0 5 5 4 0 AAA domain DNA_ligase_ZBD PF03119.11 gi|549455492|ref|YP_008604251.1| - 4.8 6.9 8.2 0.4 10.4 0.4 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain HR1 PF02185.11 gi|549455492|ref|YP_008604251.1| - 5 6.9 7.6 0.64 9.8 1.8 2.1 2 0 0 2 2 2 0 Hr1 repeat CN_hydrolase PF00795.17 gi|549455493|ref|YP_008604252.1| - 9.7e-09 34.8 0.0 1.4e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase EamA PF00892.15 gi|549455494|ref|YP_008604253.1| - 2.5e-36 124.5 32.9 5.1e-23 81.4 10.6 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|549455494|ref|YP_008604253.1| - 0.0025 18.0 39.3 0.096 12.8 14.1 3.9 1 1 1 3 3 3 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|549455494|ref|YP_008604253.1| - 0.14 12.0 7.3 1.4 8.7 1.4 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 Nuc_sug_transp PF04142.10 gi|549455494|ref|YP_008604253.1| - 2.3 7.2 8.1 0.23 10.5 0.6 2.4 2 1 0 2 2 2 0 Nucleotide-sugar transporter DUF4526 PF15029.1 gi|549455494|ref|YP_008604253.1| - 6.7 6.2 6.5 0.9 9.0 1.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4526) AMP-binding PF00501.23 gi|549455495|ref|YP_008604254.1| - 1.7e-85 286.9 0.0 2.2e-85 286.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|549455495|ref|YP_008604254.1| - 3.4e-18 66.3 1.9 4.9e-18 65.8 0.3 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MoaC PF01967.16 gi|549455497|ref|YP_008604256.1| - 6.2e-44 148.9 1.5 6.9e-44 148.8 1.1 1.0 1 0 0 1 1 1 1 MoaC family Helicase_C PF00271.26 gi|549455498|ref|YP_008604257.1| - 2.7e-12 46.3 0.0 8.3e-11 41.6 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|549455498|ref|YP_008604257.1| - 1.2e-11 44.3 0.0 4.8e-10 39.1 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|549455498|ref|YP_008604257.1| - 0.19 11.5 0.0 0.6 9.9 0.0 1.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NAD_Gly3P_dh_N PF01210.18 gi|549455500|ref|YP_008604259.1| - 0.048 13.4 0.0 0.095 12.4 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BH3 PF15285.1 gi|549455500|ref|YP_008604259.1| - 0.13 11.8 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Beclin-1 BH3 domain, Bcl-2-interacting PadR PF03551.9 gi|549455501|ref|YP_008604260.1| - 1e-20 73.2 0.2 1.7e-20 72.5 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family AphA_like PF14557.1 gi|549455501|ref|YP_008604260.1| - 0.00034 20.2 0.0 0.00047 19.7 0.0 1.2 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator RHH_1 PF01402.16 gi|549455501|ref|YP_008604260.1| - 0.065 13.1 0.7 0.23 11.4 0.5 1.9 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family adh_short_C2 PF13561.1 gi|549455503|ref|YP_008604262.1| - 0.0058 16.4 0.0 0.0061 16.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|549455503|ref|YP_008604262.1| - 0.07 13.0 0.1 0.21 11.4 0.1 1.8 1 1 0 2 2 2 0 short chain dehydrogenase HTH_29 PF13551.1 gi|549455504|ref|YP_008604263.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix RNA_Me_trans PF04252.8 gi|549455505|ref|YP_008604264.1| - 9.6e-75 250.2 0.0 1.1e-74 250.1 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase RHH_1 PF01402.16 gi|549455506|ref|YP_008604265.1| - 7.8e-05 22.4 0.1 7.8e-05 22.4 0.1 2.4 3 1 0 3 3 3 1 Ribbon-helix-helix protein, copG family BMFP PF04380.8 gi|549455506|ref|YP_008604265.1| - 2.9 8.1 5.8 1.5 8.9 0.1 2.9 3 1 0 3 3 3 0 Membrane fusogenic activity CheR_N PF03705.10 gi|549455506|ref|YP_008604265.1| - 4.6 6.6 8.0 0.45 9.9 0.2 3.0 3 0 0 3 3 3 0 CheR methyltransferase, all-alpha domain GGDN PF05165.7 gi|549455507|ref|YP_008604266.1| - 8e-87 290.3 0.3 9.7e-87 290.0 0.2 1.0 1 0 0 1 1 1 1 GGDN family DMRL_synthase PF00885.14 gi|549455508|ref|YP_008604267.1| - 8.5e-37 126.0 0.4 9.5e-37 125.8 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase AAA PF00004.24 gi|549455509|ref|YP_008604268.1| - 6.2e-102 337.0 0.0 1.4e-51 174.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|549455509|ref|YP_008604268.1| - 2.7e-27 94.5 0.2 1.6e-26 92.0 0.5 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|549455509|ref|YP_008604268.1| - 3.2e-16 59.0 0.0 2.6e-08 33.1 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|549455509|ref|YP_008604268.1| - 7.5e-16 58.5 0.0 7.6e-09 35.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|549455509|ref|YP_008604268.1| - 1.8e-15 57.4 0.1 5.5e-08 33.0 0.0 3.3 2 1 1 3 3 3 2 AAA ATPase domain AAA_17 PF13207.1 gi|549455509|ref|YP_008604268.1| - 6.1e-14 52.8 1.2 1.2e-07 32.5 0.1 3.5 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|549455509|ref|YP_008604268.1| - 3e-13 50.0 0.4 4.5e-05 23.6 0.0 4.4 2 2 0 3 3 3 2 AAA domain CDC48_2 PF02933.12 gi|549455509|ref|YP_008604268.1| - 5e-13 48.4 2.3 2.7e-12 46.1 0.1 3.0 3 0 0 3 3 3 1 Cell division protein 48 (CDC48), domain 2 AAA_33 PF13671.1 gi|549455509|ref|YP_008604268.1| - 7.4e-12 45.3 0.0 5.4e-05 23.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|549455509|ref|YP_008604268.1| - 9.4e-12 44.8 0.9 0.00016 21.3 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|549455509|ref|YP_008604268.1| - 4.1e-11 42.2 0.0 6.8e-05 21.7 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|549455509|ref|YP_008604268.1| - 5.2e-11 42.5 0.0 4.4e-06 26.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.5 gi|549455509|ref|YP_008604268.1| - 3.3e-10 39.7 0.2 0.00034 20.4 0.0 3.2 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain IstB_IS21 PF01695.12 gi|549455509|ref|YP_008604268.1| - 2.7e-09 36.7 0.8 0.0025 17.2 0.1 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|549455509|ref|YP_008604268.1| - 2.7e-09 36.4 0.0 0.00016 20.7 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|549455509|ref|YP_008604268.1| - 5.7e-09 36.3 0.1 0.00028 21.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|549455509|ref|YP_008604268.1| - 1e-08 34.7 0.3 0.0071 16.0 0.0 3.2 2 0 0 2 2 2 2 Part of AAA domain AAA_28 PF13521.1 gi|549455509|ref|YP_008604268.1| - 1.5e-08 34.8 0.0 0.0023 17.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|549455509|ref|YP_008604268.1| - 1.8e-07 30.7 11.4 0.028 13.8 0.7 5.1 2 2 3 5 5 5 2 AAA domain RNA_helicase PF00910.17 gi|549455509|ref|YP_008604268.1| - 2.1e-07 31.0 0.0 0.0033 17.5 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|549455509|ref|YP_008604268.1| - 1e-06 28.1 3.1 0.014 14.5 0.1 2.8 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|549455509|ref|YP_008604268.1| - 1.1e-06 28.6 0.0 0.016 15.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|549455509|ref|YP_008604268.1| - 2e-06 27.5 0.1 0.018 14.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|549455509|ref|YP_008604268.1| - 2.3e-06 27.4 0.4 0.0018 17.9 0.1 3.4 2 2 2 4 4 4 1 Archaeal ATPase NACHT PF05729.7 gi|549455509|ref|YP_008604268.1| - 3.5e-06 26.7 0.5 0.26 10.9 0.0 4.0 4 0 0 4 4 4 2 NACHT domain KaiC PF06745.8 gi|549455509|ref|YP_008604268.1| - 4.2e-06 26.0 2.7 0.079 12.0 0.0 3.7 3 1 1 4 4 4 2 KaiC Sigma54_activat PF00158.21 gi|549455509|ref|YP_008604268.1| - 1.3e-05 24.7 0.1 0.39 10.1 0.0 3.6 2 2 0 2 2 2 2 Sigma-54 interaction domain Bac_DnaA PF00308.13 gi|549455509|ref|YP_008604268.1| - 1.8e-05 24.4 0.0 0.0016 18.1 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein PhoH PF02562.11 gi|549455509|ref|YP_008604268.1| - 2.3e-05 23.6 0.9 0.11 11.6 0.1 2.7 2 0 0 2 2 2 2 PhoH-like protein ABC_tran PF00005.22 gi|549455509|ref|YP_008604268.1| - 2.9e-05 24.4 0.0 0.37 11.0 0.0 2.7 2 0 0 2 2 2 2 ABC transporter Parvo_NS1 PF01057.12 gi|549455509|ref|YP_008604268.1| - 3.2e-05 22.9 0.5 0.04 12.7 0.0 2.5 3 0 0 3 3 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.6 gi|549455509|ref|YP_008604268.1| - 3.6e-05 23.3 0.0 0.11 12.0 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|549455509|ref|YP_008604268.1| - 4.3e-05 22.5 0.0 0.12 11.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|549455509|ref|YP_008604268.1| - 6.1e-05 22.1 0.0 0.022 13.7 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|549455509|ref|YP_008604268.1| - 0.00017 21.4 0.0 0.12 12.2 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase UPF0079 PF02367.12 gi|549455509|ref|YP_008604268.1| - 0.00018 21.1 0.2 0.26 10.9 0.0 2.9 3 0 0 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|549455509|ref|YP_008604268.1| - 0.0011 18.7 0.8 11 5.7 0.0 4.0 2 1 1 3 3 3 0 NTPase AAA_11 PF13086.1 gi|549455509|ref|YP_008604268.1| - 0.0013 18.4 0.0 0.95 8.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain IPT PF01745.11 gi|549455509|ref|YP_008604268.1| - 0.0018 17.4 0.1 1.9 7.6 0.0 2.6 2 0 0 2 2 2 1 Isopentenyl transferase T2SE PF00437.15 gi|549455509|ref|YP_008604268.1| - 0.0035 16.2 0.0 0.45 9.3 0.0 2.7 2 0 0 2 2 2 1 Type II/IV secretion system protein NB-ARC PF00931.17 gi|549455509|ref|YP_008604268.1| - 0.0043 15.9 0.0 1.4 7.6 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain ATP-synt_ab PF00006.20 gi|549455509|ref|YP_008604268.1| - 0.0086 15.5 0.0 4.4 6.7 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|549455509|ref|YP_008604268.1| - 0.0086 15.6 0.0 6.1 6.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain Cytidylate_kin2 PF13189.1 gi|549455509|ref|YP_008604268.1| - 0.01 15.7 0.0 0.75 9.6 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family ResIII PF04851.10 gi|549455509|ref|YP_008604268.1| - 0.012 15.4 0.0 5.4 6.8 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit KTI12 PF08433.5 gi|549455509|ref|YP_008604268.1| - 0.021 14.0 0.1 3.3 6.8 0.0 2.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Molydop_binding PF01568.16 gi|549455509|ref|YP_008604268.1| - 0.022 14.5 0.5 0.38 10.5 0.1 2.7 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain Guanylate_kin PF00625.16 gi|549455509|ref|YP_008604268.1| - 0.026 13.9 0.2 24 4.2 0.0 3.8 3 1 1 4 4 4 0 Guanylate kinase AFG1_ATPase PF03969.11 gi|549455509|ref|YP_008604268.1| - 0.03 13.1 0.0 6.5 5.4 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.13 gi|549455509|ref|YP_008604268.1| - 0.058 12.9 0.0 3.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|549455509|ref|YP_008604268.1| - 0.078 12.5 0.0 9.6 5.8 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|549455509|ref|YP_008604268.1| - 0.079 12.4 0.0 7.7 6.0 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|549455509|ref|YP_008604268.1| - 0.087 12.2 4.2 4.1 6.7 0.1 3.5 2 2 0 2 2 2 0 AAA-like domain AAA_21 PF13304.1 gi|549455509|ref|YP_008604268.1| - 0.15 11.9 1.3 17 5.2 1.3 3.0 2 1 0 2 2 2 0 AAA domain KAP_NTPase PF07693.9 gi|549455509|ref|YP_008604268.1| - 0.2 10.6 0.4 23 3.8 0.0 2.8 2 2 1 3 3 3 0 KAP family P-loop domain Rad17 PF03215.10 gi|549455509|ref|YP_008604268.1| - 0.2 10.2 0.0 5 5.6 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|549455509|ref|YP_008604268.1| - 0.23 11.7 0.3 16 5.7 0.0 2.8 3 0 0 3 3 2 0 AAA domain DUF3806 PF12713.2 gi|549455510|ref|YP_008604269.1| - 0.14 11.6 0.0 0.31 10.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3806) DUF4010 PF13194.1 gi|549455511|ref|YP_008604270.1| - 1.1e-15 57.5 27.9 1.1e-15 57.5 19.4 3.0 2 2 0 2 2 2 1 Domain of unknown function (DUF4010) PAS_5 PF07310.8 gi|549455512|ref|YP_008604271.1| - 0.086 12.3 0.1 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 PAS domain Topoisom_bac PF01131.15 gi|549455513|ref|YP_008604272.1| - 1.1e-91 307.6 0.0 1.4e-91 307.3 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|549455513|ref|YP_008604272.1| - 2.8e-20 72.1 0.0 1.1e-19 70.2 0.0 2.0 2 0 0 2 2 2 1 Toprim domain DEAD PF00270.24 gi|549455513|ref|YP_008604272.1| - 3.9e-11 42.7 0.0 1.2e-10 41.1 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|549455513|ref|YP_008604272.1| - 8.1e-07 28.6 0.0 2.4e-06 27.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|549455513|ref|YP_008604272.1| - 2.3e-05 24.3 0.0 4.1e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Toprim_4 PF13662.1 gi|549455513|ref|YP_008604272.1| - 0.00018 21.4 0.7 0.0074 16.2 0.0 3.4 5 0 0 5 5 3 1 Toprim domain zf-ribbon_3 PF13248.1 gi|549455513|ref|YP_008604272.1| - 0.0002 20.4 1.0 0.00035 19.6 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain AAA_19 PF13245.1 gi|549455513|ref|YP_008604272.1| - 0.00032 20.3 0.1 0.00032 20.3 0.1 3.0 3 0 0 3 3 3 1 Part of AAA domain AAA_30 PF13604.1 gi|549455513|ref|YP_008604272.1| - 0.00081 19.0 1.3 0.0038 16.8 0.0 2.6 3 0 0 3 3 3 1 AAA domain Helicase_C PF00271.26 gi|549455513|ref|YP_008604272.1| - 0.0065 16.3 0.0 2.3 8.1 0.0 3.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain zinc_ribbon_2 PF13240.1 gi|549455513|ref|YP_008604272.1| - 0.018 14.5 1.0 0.029 13.8 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|549455513|ref|YP_008604272.1| - 0.028 14.2 0.3 0.049 13.4 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon AAA_22 PF13401.1 gi|549455513|ref|YP_008604272.1| - 0.034 14.3 0.0 0.41 10.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|549455513|ref|YP_008604272.1| - 0.035 13.5 0.0 0.085 12.2 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Cu_amine_oxidN2 PF02727.11 gi|549455513|ref|YP_008604272.1| - 0.12 12.5 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 Copper amine oxidase, N2 domain DUF87 PF01935.12 gi|549455513|ref|YP_008604272.1| - 0.14 11.9 0.1 0.28 10.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|549455513|ref|YP_008604272.1| - 0.21 11.0 0.0 0.39 10.1 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|549455514|ref|YP_008604273.1| - 4.2e-23 82.1 0.0 6.2e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455514|ref|YP_008604273.1| - 4.5e-14 53.1 0.0 3e-07 30.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|549455514|ref|YP_008604273.1| - 6.7e-06 26.5 0.0 1.1e-05 25.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|549455514|ref|YP_008604273.1| - 1.5e-05 24.5 0.1 0.0059 16.0 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|549455514|ref|YP_008604273.1| - 0.00011 21.4 0.0 0.032 13.4 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|549455514|ref|YP_008604273.1| - 0.00015 21.4 0.3 0.019 14.6 0.2 2.8 2 1 0 2 2 2 1 Part of AAA domain DUF4162 PF13732.1 gi|549455514|ref|YP_008604273.1| - 0.0031 17.9 0.0 0.0052 17.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|549455514|ref|YP_008604273.1| - 0.005 16.3 0.1 0.0095 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|549455514|ref|YP_008604273.1| - 0.0086 15.6 0.0 0.29 10.6 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_15 PF13175.1 gi|549455514|ref|YP_008604273.1| - 0.02 13.9 0.0 1.2 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain T2SE PF00437.15 gi|549455514|ref|YP_008604273.1| - 0.026 13.4 0.1 0.045 12.6 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.14 gi|549455514|ref|YP_008604273.1| - 0.038 13.4 1.2 0.063 12.7 0.9 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|549455514|ref|YP_008604273.1| - 0.043 12.6 0.1 0.069 11.9 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_14 PF13173.1 gi|549455514|ref|YP_008604273.1| - 0.044 13.6 0.0 0.86 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|549455514|ref|YP_008604273.1| - 0.095 12.3 0.6 0.21 11.2 0.4 1.5 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.10 gi|549455514|ref|YP_008604273.1| - 0.1 12.3 1.1 1 9.0 0.2 2.2 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.1 gi|549455514|ref|YP_008604273.1| - 0.11 12.3 0.3 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|549455514|ref|YP_008604273.1| - 0.17 11.0 0.0 0.31 10.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC2_membrane_4 PF12730.2 gi|549455515|ref|YP_008604274.1| - 2.9e-11 42.9 21.1 2.9e-11 42.9 14.7 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein Pam17 PF08566.5 gi|549455515|ref|YP_008604274.1| - 5.1 6.7 7.2 0.86 9.2 0.8 2.4 2 1 1 3 3 3 0 Mitochondrial import protein Pam17 Transp_cyt_pur PF02133.10 gi|549455516|ref|YP_008604275.1| - 2.9e-19 68.9 31.9 2.9e-19 68.9 22.1 1.5 2 0 0 2 2 2 1 Permease for cytosine/purines, uracil, thiamine, allantoin Prenyltransf PF01255.14 gi|549455518|ref|YP_008604277.1| - 3.5e-40 137.5 0.0 1.8e-19 69.7 0.0 2.0 1 1 1 2 2 2 2 Putative undecaprenyl diphosphate synthase ELFV_dehydrog PF00208.16 gi|549455519|ref|YP_008604278.1| - 3.6e-72 242.8 3.7 4.4e-72 242.5 2.6 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|549455519|ref|YP_008604278.1| - 2.9e-49 165.9 0.0 5.2e-49 165.1 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|549455519|ref|YP_008604278.1| - 0.00018 20.6 0.1 0.00034 19.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.14 gi|549455519|ref|YP_008604278.1| - 0.013 14.1 0.0 0.019 13.6 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase NAD_binding_7 PF13241.1 gi|549455519|ref|YP_008604278.1| - 0.014 15.6 0.1 0.032 14.4 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Bac_GDH PF05088.7 gi|549455519|ref|YP_008604278.1| - 0.022 12.1 0.0 0.03 11.7 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase AlaDh_PNT_C PF01262.16 gi|549455519|ref|YP_008604278.1| - 0.046 13.2 1.9 0.053 13.0 0.2 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.16 gi|549455519|ref|YP_008604278.1| - 0.069 12.9 1.6 0.24 11.2 1.1 1.9 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Dpy-30 PF05186.8 gi|549455520|ref|YP_008604279.1| - 0.061 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Dpy-30 motif DUF1028 PF06267.7 gi|549455521|ref|YP_008604280.1| - 6.7e-70 234.3 0.0 1.1e-69 233.7 0.0 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF1028) PG_binding_2 PF08823.6 gi|549455521|ref|YP_008604280.1| - 4.7e-24 84.2 0.0 2.6e-23 81.9 0.0 2.1 2 0 0 2 2 2 1 Putative peptidoglycan binding domain SBP_bac_5 PF00496.17 gi|549455522|ref|YP_008604281.1| - 6.9e-72 242.3 5.5 1e-71 241.7 3.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Shisa PF13908.1 gi|549455522|ref|YP_008604281.1| - 0.078 13.1 0.5 0.13 12.4 0.3 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator BPD_transp_1 PF00528.17 gi|549455523|ref|YP_008604282.1| - 4.7e-38 130.5 14.5 4.7e-38 130.5 10.0 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|549455524|ref|YP_008604283.1| - 1.9e-28 99.2 14.4 1.9e-28 99.2 10.0 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|549455524|ref|YP_008604283.1| - 0.00012 21.4 0.7 0.00012 21.4 0.5 3.1 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|549455525|ref|YP_008604284.1| - 4.9e-23 81.9 0.0 6.5e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|549455525|ref|YP_008604284.1| - 1.6e-21 76.3 0.7 2.8e-21 75.6 0.5 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|549455525|ref|YP_008604284.1| - 3.2e-09 37.1 0.1 3e-08 33.9 0.0 2.0 1 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|549455525|ref|YP_008604284.1| - 0.0018 17.7 0.0 0.0041 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|549455525|ref|YP_008604284.1| - 0.0023 17.4 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|549455525|ref|YP_008604284.1| - 0.011 15.2 0.0 0.53 9.6 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|549455525|ref|YP_008604284.1| - 0.013 15.4 0.0 0.018 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|549455525|ref|YP_008604284.1| - 0.027 14.5 1.3 0.49 10.5 0.9 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|549455525|ref|YP_008604284.1| - 0.029 13.4 0.0 0.044 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.9 gi|549455525|ref|YP_008604284.1| - 0.092 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|549455526|ref|YP_008604285.1| - 5.5e-31 107.6 0.0 7.4e-31 107.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|549455526|ref|YP_008604285.1| - 2.8e-20 72.4 0.7 4.8e-20 71.6 0.5 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|549455526|ref|YP_008604285.1| - 4.3e-12 46.5 1.3 2.6e-08 34.2 0.2 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|549455526|ref|YP_008604285.1| - 1.9e-05 23.9 0.2 0.00037 19.8 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|549455526|ref|YP_008604285.1| - 8.2e-05 22.7 0.2 0.00044 20.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|549455526|ref|YP_008604285.1| - 0.0028 16.8 0.6 0.0076 15.3 0.2 1.8 2 0 0 2 2 2 1 KaiC SbcCD_C PF13558.1 gi|549455526|ref|YP_008604285.1| - 0.007 16.2 0.0 0.049 13.5 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|549455526|ref|YP_008604285.1| - 0.012 15.1 0.1 0.022 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|549455526|ref|YP_008604285.1| - 0.021 13.3 0.1 3.5 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|549455526|ref|YP_008604285.1| - 0.027 13.8 0.2 0.28 10.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|549455526|ref|YP_008604285.1| - 0.028 13.4 0.1 0.23 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|549455526|ref|YP_008604285.1| - 0.041 14.1 0.4 0.13 12.5 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|549455526|ref|YP_008604285.1| - 0.045 13.9 0.0 0.53 10.4 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|549455526|ref|YP_008604285.1| - 0.14 12.1 1.4 0.29 11.0 0.9 1.7 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|549455526|ref|YP_008604285.1| - 0.21 10.3 0.2 0.36 9.6 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain EPSP_synthase PF00275.15 gi|549455527|ref|YP_008604286.1| - 2.2e-60 204.2 0.0 2.5e-60 204.0 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Mitofilin PF09731.4 gi|549455528|ref|YP_008604287.1| - 0.0011 17.7 6.2 0.0013 17.5 4.3 1.0 1 0 0 1 1 1 1 Mitochondrial inner membrane protein Muted PF14942.1 gi|549455528|ref|YP_008604287.1| - 0.0014 18.4 1.2 0.0017 18.2 0.8 1.2 1 0 0 1 1 1 1 Organelle biogenesis, Muted-like protein Apolipoprotein PF01442.13 gi|549455528|ref|YP_008604287.1| - 0.0038 16.7 2.9 0.005 16.3 2.0 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain PaaSYMP PF14738.1 gi|549455528|ref|YP_008604287.1| - 0.0045 16.7 2.3 0.0048 16.6 1.6 1.1 1 0 0 1 1 1 1 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 Spo0A_C PF08769.6 gi|549455528|ref|YP_008604287.1| - 0.0058 16.4 0.5 0.14 12.0 0.1 2.0 1 1 1 2 2 2 1 Sporulation initiation factor Spo0A C terminal RapA_C PF12137.3 gi|549455528|ref|YP_008604287.1| - 0.0084 14.9 0.7 0.0094 14.8 0.5 1.0 1 0 0 1 1 1 1 RNA polymerase recycling family C-terminal DUF3175 PF11373.3 gi|549455528|ref|YP_008604287.1| - 0.012 15.6 1.1 0.015 15.3 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3175) Exonuc_VII_L PF02601.10 gi|549455528|ref|YP_008604287.1| - 0.026 13.7 1.0 0.031 13.4 0.7 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Sec2p PF06428.6 gi|549455528|ref|YP_008604287.1| - 0.046 13.5 3.2 0.058 13.2 2.2 1.3 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p Luteo_PO PF04662.8 gi|549455528|ref|YP_008604287.1| - 0.062 12.7 0.1 0.071 12.5 0.1 1.2 1 0 0 1 1 1 0 Luteovirus P0 protein Nsp1_C PF05064.8 gi|549455528|ref|YP_008604287.1| - 0.067 12.8 1.5 0.16 11.6 0.8 1.8 1 1 0 1 1 1 0 Nsp1-like C-terminal region HSP70 PF00012.15 gi|549455528|ref|YP_008604287.1| - 0.074 10.9 1.1 0.079 10.8 0.8 1.0 1 0 0 1 1 1 0 Hsp70 protein LUC7 PF03194.10 gi|549455528|ref|YP_008604287.1| - 0.076 12.5 0.5 0.086 12.3 0.3 1.1 1 0 0 1 1 1 0 LUC7 N_terminus DUF1311 PF07007.7 gi|549455528|ref|YP_008604287.1| - 0.1 12.7 1.7 0.15 12.1 1.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1311) zf-C4H2 PF10146.4 gi|549455528|ref|YP_008604287.1| - 0.11 12.4 0.9 0.13 12.2 0.6 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein IncA PF04156.9 gi|549455528|ref|YP_008604287.1| - 0.16 11.5 3.6 0.21 11.1 2.5 1.2 1 0 0 1 1 1 0 IncA protein ATP-synt_B PF00430.13 gi|549455528|ref|YP_008604287.1| - 0.17 11.6 6.1 0.24 11.2 4.2 1.3 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) DUF3209 PF11483.3 gi|549455528|ref|YP_008604287.1| - 0.2 12.0 6.7 0.78 10.0 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3209) YfcL PF08891.6 gi|549455528|ref|YP_008604287.1| - 0.28 11.1 2.0 0.51 10.3 1.4 1.6 1 1 0 1 1 1 0 YfcL protein COG2 PF06148.6 gi|549455528|ref|YP_008604287.1| - 0.34 10.7 3.4 0.34 10.7 0.2 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 HK97-gp10_like PF04883.7 gi|549455528|ref|YP_008604287.1| - 0.43 11.5 2.5 0.58 11.1 1.1 1.7 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component DUF2018 PF09442.5 gi|549455528|ref|YP_008604287.1| - 1 9.9 3.4 5.1 7.7 1.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2018) GrpE PF01025.14 gi|549455528|ref|YP_008604287.1| - 2.5 7.6 7.1 4.7 6.7 4.9 1.6 1 1 0 1 1 1 0 GrpE DUF883 PF05957.8 gi|549455528|ref|YP_008604287.1| - 4.6 7.7 7.6 4.8 7.6 2.4 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) HemN_C PF06969.11 gi|549455530|ref|YP_008604289.1| - 0.00068 19.6 0.0 0.00092 19.2 0.0 1.3 1 0 0 1 1 1 1 HemN C-terminal domain HTH_Crp_2 PF13545.1 gi|549455530|ref|YP_008604289.1| - 0.003 17.3 0.0 0.0049 16.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|549455530|ref|YP_008604289.1| - 0.052 13.6 0.0 0.068 13.2 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.2 gi|549455530|ref|YP_008604289.1| - 0.061 12.9 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 MarR family GntR PF00392.16 gi|549455530|ref|YP_008604289.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FdhE PF04216.7 gi|549455531|ref|YP_008604290.1| - 3.2e-07 30.3 1.0 6.1e-07 29.4 0.7 1.4 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation UPF0547 PF10571.4 gi|549455531|ref|YP_008604290.1| - 0.0018 17.8 10.6 0.0086 15.7 2.6 3.4 2 1 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|549455531|ref|YP_008604290.1| - 0.0045 16.1 8.4 0.0057 15.8 1.1 2.9 2 1 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|549455531|ref|YP_008604290.1| - 0.0084 15.7 3.6 0.78 9.4 0.2 2.6 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Elf1 PF05129.8 gi|549455531|ref|YP_008604290.1| - 0.012 15.2 0.2 0.95 9.2 0.0 2.5 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|549455531|ref|YP_008604290.1| - 0.016 15.4 7.8 0.64 10.3 5.4 2.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|549455531|ref|YP_008604290.1| - 0.017 14.6 6.7 0.1 12.1 1.5 3.1 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|549455531|ref|YP_008604290.1| - 0.021 14.6 4.4 0.6 9.9 3.0 2.6 1 1 0 1 1 1 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|549455531|ref|YP_008604290.1| - 0.045 13.7 1.9 4.5 7.3 0.0 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.7 gi|549455531|ref|YP_008604290.1| - 0.1 12.4 2.8 23 4.8 0.0 3.3 3 1 0 3 3 3 0 PhnA Zinc-Ribbon zf-NADH-PPase PF09297.6 gi|549455531|ref|YP_008604290.1| - 0.14 11.6 13.8 1.4 8.5 0.1 4.1 3 1 1 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Ral PF11058.3 gi|549455531|ref|YP_008604290.1| - 0.2 11.0 0.7 0.81 9.0 0.2 2.1 2 0 0 2 2 2 0 Antirestriction protein Ral zf-C3HC4_3 PF13920.1 gi|549455531|ref|YP_008604290.1| - 0.54 9.9 6.9 0.17 11.6 2.4 1.9 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_2 PF13923.1 gi|549455531|ref|YP_008604290.1| - 0.78 9.8 6.6 5.3 7.1 0.7 3.2 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.2 gi|549455531|ref|YP_008604290.1| - 0.83 9.5 12.0 10 5.9 0.9 3.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|549455531|ref|YP_008604290.1| - 0.95 9.4 7.8 17 5.5 0.9 3.3 3 0 0 3 3 3 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|549455531|ref|YP_008604290.1| - 1 8.7 13.4 0.54 9.6 1.6 3.0 2 1 0 2 2 2 0 TFIIB zinc-binding zf-tcix PF14952.1 gi|549455531|ref|YP_008604290.1| - 2 7.8 8.6 1 8.7 0.3 3.2 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Zn_ribbon_recom PF13408.1 gi|549455531|ref|YP_008604290.1| - 2.8 8.2 6.0 24 5.3 0.1 3.3 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain Baculo_IE-1 PF05290.6 gi|549455531|ref|YP_008604290.1| - 2.9 7.6 4.5 6.3 6.5 3.1 1.5 1 1 0 1 1 1 0 Baculovirus immediate-early protein (IE-0) A2L_zn_ribbon PF08792.5 gi|549455531|ref|YP_008604290.1| - 3.8 7.0 6.2 9.4 5.8 0.0 3.6 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-C2H2_4 PF13894.1 gi|549455531|ref|YP_008604290.1| - 3.9 8.0 5.4 45 4.7 0.0 3.4 4 0 0 4 4 3 0 C2H2-type zinc finger zf-C3HC4 PF00097.20 gi|549455531|ref|YP_008604290.1| - 8.2 6.1 9.4 5.8 6.6 3.8 2.6 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-FPG_IleRS PF06827.9 gi|549455531|ref|YP_008604290.1| - 9.5 5.9 13.0 4 7.1 0.1 3.7 4 0 0 4 4 3 0 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|549455531|ref|YP_008604290.1| - 9.6 5.9 8.1 3.5 7.3 1.0 3.1 2 1 2 4 4 4 0 Hydrogenase expression/synthesis hypA family Oxidored_q1 PF00361.15 gi|549455532|ref|YP_008604291.1| - 9.8e-28 97.1 13.0 9.8e-28 97.1 9.0 2.3 1 1 1 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4583 PF15190.1 gi|549455532|ref|YP_008604291.1| - 0.73 9.4 5.6 0.15 11.6 1.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4583) DUF3624 PF12292.3 gi|549455532|ref|YP_008604291.1| - 0.92 9.9 7.8 2 8.8 0.1 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3624) Oxidored_q1 PF00361.15 gi|549455533|ref|YP_008604292.1| - 4.2e-53 180.3 17.5 2.3e-50 171.3 10.2 5.2 5 1 0 5 5 5 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|549455533|ref|YP_008604292.1| - 1.6e-10 40.3 1.5 1.6e-10 40.3 1.0 2.5 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF4516 PF14990.1 gi|549455533|ref|YP_008604292.1| - 0.16 11.5 3.3 3.3 7.3 0.2 3.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4516) Oxidored_q1 PF00361.15 gi|549455534|ref|YP_008604293.1| - 3.7e-55 187.0 18.6 3.7e-55 187.0 12.9 1.8 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|549455534|ref|YP_008604293.1| - 0.0001 21.8 2.0 0.0001 21.8 1.4 2.5 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|549455535|ref|YP_008604294.1| - 1.3e-09 37.5 11.4 1.5e-09 37.3 7.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Imp-YgjV PF10688.4 gi|549455535|ref|YP_008604294.1| - 0.26 10.6 6.4 0.31 10.4 4.4 1.0 1 0 0 1 1 1 0 Bacterial inner membrane protein Oxidored_q3 PF00499.15 gi|549455536|ref|YP_008604295.1| - 4.1e-13 49.3 6.8 4.9e-13 49.0 4.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 UPF0114 PF03350.11 gi|549455536|ref|YP_008604295.1| - 1.7 8.5 7.6 0.18 11.6 2.2 1.6 2 0 0 2 2 2 0 Uncharacterized protein family, UPF0114 DUF4131 PF13567.1 gi|549455536|ref|YP_008604295.1| - 6.4 6.1 12.8 0.57 9.5 3.3 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) Fer4 PF00037.22 gi|549455537|ref|YP_008604296.1| - 5.3e-14 51.1 13.8 6.9e-09 34.9 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|549455537|ref|YP_008604296.1| - 7.5e-12 44.8 19.9 2.5e-08 33.5 8.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|549455537|ref|YP_008604296.1| - 1.4e-11 43.7 13.4 1.6e-06 27.7 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|549455537|ref|YP_008604296.1| - 3.8e-10 39.8 18.8 4.1e-08 33.3 7.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|549455537|ref|YP_008604296.1| - 8.1e-10 38.9 11.6 1.7e-09 37.9 8.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|549455537|ref|YP_008604296.1| - 2.7e-08 34.4 18.7 8e-07 29.7 7.2 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|549455537|ref|YP_008604296.1| - 6.7e-08 32.2 7.9 1e-07 31.6 5.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|549455537|ref|YP_008604296.1| - 7.8e-08 32.0 12.5 0.00018 21.6 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|549455537|ref|YP_008604296.1| - 7.9e-08 31.7 13.3 0.00023 20.8 1.6 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|549455537|ref|YP_008604296.1| - 1.4e-07 31.7 2.6 0.0039 17.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|549455537|ref|YP_008604296.1| - 1.2e-06 28.9 5.5 0.018 15.5 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|549455537|ref|YP_008604296.1| - 1.5e-06 28.1 19.0 0.00015 21.6 8.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|549455537|ref|YP_008604296.1| - 0.0001 22.6 5.3 0.13 12.7 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|549455537|ref|YP_008604296.1| - 0.00014 22.1 17.4 0.0015 18.9 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|549455537|ref|YP_008604296.1| - 0.00033 20.9 11.0 0.13 12.6 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|549455537|ref|YP_008604296.1| - 0.0076 16.1 0.6 1.9 8.4 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain NADHdh PF00146.16 gi|549455538|ref|YP_008604297.1| - 6.4e-54 183.1 17.4 8.5e-54 182.7 12.1 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|549455539|ref|YP_008604298.1| - 8e-59 198.8 0.0 1.1e-58 198.4 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TPR_7 PF13176.1 gi|549455539|ref|YP_008604298.1| - 0.13 12.1 0.4 0.8 9.6 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Complex1_30kDa PF00329.14 gi|549455540|ref|YP_008604299.1| - 2.3e-31 108.0 0.0 3.4e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Glyoxalase_3 PF13468.1 gi|549455540|ref|YP_008604299.1| - 0.0072 16.2 0.0 0.0096 15.8 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain PepSY PF03413.14 gi|549455540|ref|YP_008604299.1| - 0.22 12.1 1.9 12 6.6 0.9 3.0 2 1 0 2 2 2 0 Peptidase propeptide and YPEB domain Oxidored_q6 PF01058.17 gi|549455541|ref|YP_008604300.1| - 3.2e-20 72.0 0.1 4.5e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|549455542|ref|YP_008604301.1| - 0.0021 17.8 0.5 0.0043 16.8 0.4 1.5 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Cytochrom_B_N PF00033.14 gi|549455542|ref|YP_008604301.1| - 0.0032 16.8 0.5 0.005 16.2 0.3 1.3 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Yip1 PF04893.12 gi|549455542|ref|YP_008604301.1| - 0.051 13.0 4.9 0.71 9.3 0.3 2.1 2 0 0 2 2 2 0 Yip1 domain UPF0370 PF13980.1 gi|549455542|ref|YP_008604301.1| - 0.35 10.7 1.2 3.5 7.5 0.0 2.7 2 2 1 3 3 3 0 Uncharacterised protein family (UPF0370) Exosortase_EpsH PF09721.5 gi|549455542|ref|YP_008604301.1| - 1.8 7.7 11.6 0.43 9.7 3.7 2.0 2 0 0 2 2 2 0 Transmembrane exosortase (Exosortase_EpsH) DUF805 PF05656.9 gi|549455542|ref|YP_008604301.1| - 2.1 8.1 6.5 4 7.2 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF805) DUF4064 PF13273.1 gi|549455542|ref|YP_008604301.1| - 3.3 7.8 7.3 10 6.3 5.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) YqhR PF11085.3 gi|549455542|ref|YP_008604301.1| - 9.4 5.7 6.8 2.9 7.3 1.3 1.9 2 0 0 2 2 2 0 Conserved membrane protein YqhR GTP_EFTU PF00009.22 gi|549455543|ref|YP_008604302.1| - 4.1e-61 205.6 0.1 5.9e-61 205.1 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|549455543|ref|YP_008604302.1| - 4.8e-35 119.7 0.2 1.3e-33 115.1 0.0 3.0 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|549455543|ref|YP_008604302.1| - 1.7e-23 82.2 0.1 4e-23 81.0 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|549455543|ref|YP_008604302.1| - 1.3e-22 79.4 0.0 6.6e-22 77.1 0.0 2.3 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|549455543|ref|YP_008604302.1| - 3e-13 49.6 0.2 9.2e-13 48.1 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|549455543|ref|YP_008604302.1| - 3.8e-05 23.6 0.5 8.8e-05 22.4 0.1 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|549455543|ref|YP_008604302.1| - 0.033 13.4 0.1 0.41 9.8 0.0 2.2 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit Dak2 PF02734.12 gi|549455543|ref|YP_008604302.1| - 0.068 12.8 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 DAK2 domain G-alpha PF00503.15 gi|549455543|ref|YP_008604302.1| - 0.25 9.9 0.0 0.43 9.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ERCC4 PF02732.10 gi|549455544|ref|YP_008604303.1| - 4.2e-23 81.6 0.0 6.5e-23 81.0 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH PF00633.18 gi|549455544|ref|YP_008604303.1| - 7.3e-11 41.1 0.1 1.5e-05 24.3 0.1 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|549455544|ref|YP_008604303.1| - 7.4e-10 38.5 0.0 2.4e-09 36.9 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|549455544|ref|YP_008604303.1| - 1.3e-09 38.1 0.0 2.2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|549455544|ref|YP_008604303.1| - 0.00011 22.0 0.1 0.0041 17.0 0.0 2.4 1 1 0 1 1 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|549455544|ref|YP_008604303.1| - 0.00058 19.7 0.0 0.017 15.1 0.0 2.5 2 0 0 2 2 2 1 IMS family HHH motif 5_3_exonuc PF01367.15 gi|549455544|ref|YP_008604303.1| - 0.002 18.2 0.0 0.02 15.1 0.0 2.1 1 1 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.11 gi|549455544|ref|YP_008604303.1| - 0.0027 17.7 0.0 0.0066 16.5 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family HHH_8 PF14716.1 gi|549455544|ref|YP_008604303.1| - 0.004 17.3 0.1 2 8.6 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain FAM110_N PF14161.1 gi|549455544|ref|YP_008604303.1| - 0.071 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Centrosome-associated N terminus DHH PF01368.15 gi|549455545|ref|YP_008604304.1| - 2.9e-13 49.7 0.0 5.8e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|549455545|ref|YP_008604304.1| - 9.6e-10 38.0 1.5 9.6e-10 38.0 1.0 2.0 2 0 0 2 2 2 1 DHHA1 domain DUF3313 PF11769.3 gi|549455546|ref|YP_008604305.1| - 0.091 12.1 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3313) DUF1843 PF08898.5 gi|549455546|ref|YP_008604305.1| - 0.19 11.7 2.4 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) Lzipper-MIP1 PF14389.1 gi|549455546|ref|YP_008604305.1| - 0.21 11.7 3.3 0.77 9.9 2.3 1.8 1 1 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 Prefoldin_2 PF01920.15 gi|549455547|ref|YP_008604306.1| - 3.8e-25 87.7 7.7 4.2e-25 87.5 5.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit Nsp1_C PF05064.8 gi|549455547|ref|YP_008604306.1| - 0.00081 19.0 2.4 0.023 14.3 0.4 2.1 2 0 0 2 2 2 1 Nsp1-like C-terminal region DUF869 PF05911.6 gi|549455547|ref|YP_008604306.1| - 0.0091 14.2 1.6 0.011 14.0 1.1 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Cortex-I_coil PF09304.5 gi|549455547|ref|YP_008604306.1| - 0.011 15.7 10.4 0.23 11.5 4.6 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil XhlA PF10779.4 gi|549455547|ref|YP_008604306.1| - 0.018 14.9 1.9 0.025 14.4 0.5 1.7 2 0 0 2 2 2 0 Haemolysin XhlA Prefoldin PF02996.12 gi|549455547|ref|YP_008604306.1| - 0.024 14.2 5.6 0.15 11.6 3.9 2.0 1 1 0 1 1 1 0 Prefoldin subunit Laminin_II PF06009.7 gi|549455547|ref|YP_008604306.1| - 0.046 13.4 5.3 0.088 12.5 3.7 1.5 1 1 0 1 1 1 0 Laminin Domain II ADIP PF11559.3 gi|549455547|ref|YP_008604306.1| - 0.062 13.1 3.8 4.4 7.1 2.8 2.0 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding CENP-F_leu_zip PF10473.4 gi|549455547|ref|YP_008604306.1| - 0.073 12.9 10.1 1.3 8.8 4.4 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-K PF11802.3 gi|549455547|ref|YP_008604306.1| - 0.094 11.9 6.3 0.11 11.6 4.3 1.3 1 1 0 1 1 1 0 Centromere-associated protein K V_ATPase_I PF01496.14 gi|549455547|ref|YP_008604306.1| - 0.26 9.0 1.0 0.29 8.9 0.7 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FlaC_arch PF05377.6 gi|549455547|ref|YP_008604306.1| - 0.32 10.9 6.6 0.26 11.2 2.7 2.0 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DASH_Dad2 PF08654.5 gi|549455547|ref|YP_008604306.1| - 0.46 10.5 4.4 0.45 10.5 2.0 1.7 2 0 0 2 2 2 0 DASH complex subunit Dad2 Viral_P18 PF04521.8 gi|549455547|ref|YP_008604306.1| - 0.58 9.6 2.7 1.2 8.5 1.9 1.5 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein Enkurin PF13864.1 gi|549455547|ref|YP_008604306.1| - 0.59 10.3 9.6 1.3 9.2 0.1 2.6 2 1 0 2 2 2 0 Calmodulin-binding DUF1875 PF08961.5 gi|549455547|ref|YP_008604306.1| - 0.64 9.2 4.2 0.8 8.9 2.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1875) CENP-Q PF13094.1 gi|549455547|ref|YP_008604306.1| - 0.68 9.9 9.7 0.21 11.6 3.1 2.0 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit FbpA PF05833.6 gi|549455547|ref|YP_008604306.1| - 0.93 7.9 10.4 0.22 9.9 0.1 2.0 1 1 0 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) APG6 PF04111.7 gi|549455547|ref|YP_008604306.1| - 1.5 7.7 10.1 2.7 6.9 5.7 1.8 1 1 1 2 2 2 0 Autophagy protein Apg6 TMF_DNA_bd PF12329.3 gi|549455547|ref|YP_008604306.1| - 2.4 8.0 16.4 1.4 8.8 7.4 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF1319 PF07028.6 gi|549455547|ref|YP_008604306.1| - 2.9 8.1 8.5 2.9 8.1 3.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) DivIC PF04977.10 gi|549455547|ref|YP_008604306.1| - 3.2 7.3 6.8 2.4 7.7 3.3 1.8 1 1 1 2 2 2 0 Septum formation initiator bZIP_1 PF00170.16 gi|549455547|ref|YP_008604306.1| - 3.4 7.6 11.2 0.55 10.2 4.6 2.0 2 1 0 2 2 2 0 bZIP transcription factor FTA4 PF13093.1 gi|549455547|ref|YP_008604306.1| - 4.1 6.7 7.1 13 5.1 5.1 1.6 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF4140 PF13600.1 gi|549455547|ref|YP_008604306.1| - 4.5 7.7 6.1 15 6.0 1.8 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF972 PF06156.8 gi|549455547|ref|YP_008604306.1| - 6.3 7.1 6.7 29 5.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) IncA PF04156.9 gi|549455547|ref|YP_008604306.1| - 6.5 6.3 10.1 16 5.0 7.0 1.6 1 1 0 1 1 1 0 IncA protein Pcc1 PF09341.5 gi|549455548|ref|YP_008604307.1| - 4.9e-11 42.5 0.0 5.3e-11 42.3 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 MS_channel PF00924.13 gi|549455549|ref|YP_008604308.1| - 5.5e-53 179.3 0.3 7.4e-53 178.9 0.2 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF432 PF04254.8 gi|549455550|ref|YP_008604309.1| - 3.9e-29 101.0 0.0 5.3e-29 100.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) Brix PF04427.13 gi|549455551|ref|YP_008604310.1| - 2.5e-19 69.7 0.0 3.2e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 Brix domain Ribosomal_L37ae PF01780.14 gi|549455552|ref|YP_008604311.1| - 2.5e-31 107.3 3.7 2.7e-31 107.2 2.6 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|549455552|ref|YP_008604311.1| - 0.00074 19.2 2.2 0.0011 18.7 1.5 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|549455552|ref|YP_008604311.1| - 0.003 17.1 0.4 0.0043 16.6 0.2 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|549455552|ref|YP_008604311.1| - 0.0065 16.3 0.7 0.17 11.8 0.0 2.2 2 0 0 2 2 2 1 Zinc ribbon domain DUF4379 PF14311.1 gi|549455552|ref|YP_008604311.1| - 0.02 14.6 2.6 0.14 11.9 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) TF_Zn_Ribbon PF08271.7 gi|549455552|ref|YP_008604311.1| - 0.03 13.6 0.4 0.051 12.9 0.3 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|549455552|ref|YP_008604311.1| - 0.032 14.5 2.1 0.069 13.4 1.4 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-H2C2_2 PF13465.1 gi|549455552|ref|YP_008604311.1| - 0.069 13.4 1.2 0.19 12.0 0.1 2.0 2 0 0 2 2 2 0 Zinc-finger double domain Prim_Zn_Ribbon PF08273.7 gi|549455552|ref|YP_008604311.1| - 0.092 12.8 5.6 0.2 11.7 3.9 1.5 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-ISL3 PF14690.1 gi|549455552|ref|YP_008604311.1| - 0.23 11.5 3.7 2.1 8.4 0.2 2.8 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1 PF03811.8 gi|549455552|ref|YP_008604311.1| - 0.25 10.8 0.2 0.25 10.8 0.1 2.0 2 0 0 2 2 2 0 InsA N-terminal domain NOB1_Zn_bind PF08772.6 gi|549455552|ref|YP_008604311.1| - 0.35 10.7 2.8 0.7 9.7 0.1 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TFIIS_C PF01096.13 gi|549455552|ref|YP_008604311.1| - 1.8 8.2 4.9 17 5.1 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.5 gi|549455552|ref|YP_008604311.1| - 1.8 8.1 4.2 9.1 5.8 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain RNase_PH PF01138.16 gi|549455553|ref|YP_008604312.1| - 1.8e-33 115.6 0.1 3.2e-32 111.6 0.0 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|549455553|ref|YP_008604312.1| - 2.1e-10 40.4 0.8 3.9e-10 39.5 0.2 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 Cloacin_immun PF03513.9 gi|549455553|ref|YP_008604312.1| - 0.061 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Cloacin immunity protein DUF3000 PF11452.3 gi|549455553|ref|YP_008604312.1| - 0.072 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3000) RNase_PH PF01138.16 gi|549455554|ref|YP_008604313.1| - 3e-37 127.8 0.0 4.2e-37 127.4 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|549455554|ref|YP_008604313.1| - 1.2e-12 47.5 0.2 2e-12 46.8 0.2 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|549455555|ref|YP_008604314.1| - 1.5e-09 37.3 0.1 4e-09 35.9 0.1 1.7 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|549455555|ref|YP_008604314.1| - 2.2e-06 27.6 1.0 1.6e-05 24.9 0.0 2.7 3 0 0 3 3 3 1 S1 RNA binding domain KH_2 PF07650.12 gi|549455555|ref|YP_008604314.1| - 0.00091 18.7 0.3 0.0026 17.2 0.2 1.7 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|549455555|ref|YP_008604314.1| - 0.0025 17.4 0.0 0.0098 15.5 0.0 2.1 1 0 0 1 1 1 1 KH domain Proteasome PF00227.21 gi|549455556|ref|YP_008604315.1| - 4.1e-60 202.3 0.0 7.8e-60 201.4 0.0 1.4 1 1 1 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|549455556|ref|YP_008604315.1| - 1.7e-11 43.2 0.5 1.7e-11 43.2 0.3 1.8 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_p30 PF01876.11 gi|549455557|ref|YP_008604316.1| - 3.8e-21 74.9 0.0 4.5e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Amidohydro_4 PF13147.1 gi|549455557|ref|YP_008604316.1| - 0.079 12.9 2.3 0.21 11.5 0.7 1.8 1 1 1 2 2 2 0 Amidohydrolase RNA_binding PF01877.12 gi|549455558|ref|YP_008604317.1| - 3.6e-32 110.8 0.0 4.6e-32 110.5 0.0 1.1 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.12 gi|549455559|ref|YP_008604318.1| - 5.3e-81 270.7 7.3 6.8e-81 270.3 5.0 1.2 1 0 0 1 1 1 1 Ribosomal L15 E1-E2_ATPase PF00122.15 gi|549455560|ref|YP_008604319.1| - 1.5e-56 190.9 0.2 1.5e-56 190.9 0.1 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|549455560|ref|YP_008604319.1| - 4.6e-52 177.5 0.2 1.1e-51 176.3 0.2 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|549455560|ref|YP_008604319.1| - 7.6e-20 70.8 0.1 6.2e-12 45.4 0.1 2.6 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|549455560|ref|YP_008604319.1| - 4.5e-18 66.1 0.0 1.3e-17 64.6 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|549455560|ref|YP_008604319.1| - 2.5e-05 23.9 0.1 0.0047 16.5 0.1 2.5 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|549455560|ref|YP_008604319.1| - 0.0032 17.3 0.0 0.027 14.3 0.0 2.5 3 1 0 3 3 3 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|549455560|ref|YP_008604319.1| - 0.13 12.4 0.0 0.31 11.2 0.0 1.8 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Ferritin PF00210.19 gi|549455561|ref|YP_008604320.1| - 5.4e-24 84.5 0.0 6.7e-24 84.2 0.0 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|549455561|ref|YP_008604320.1| - 8.5e-08 32.6 1.3 2.2e-06 28.0 0.4 1.9 1 1 1 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.1 gi|549455561|ref|YP_008604320.1| - 0.0015 18.4 0.0 0.002 18.0 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain Pyr_redox_dim PF02852.17 gi|549455562|ref|YP_008604321.1| - 2.4e-31 107.9 0.1 4.9e-31 107.0 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|549455562|ref|YP_008604321.1| - 4.5e-30 105.0 9.3 2.5e-29 102.6 6.5 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|549455562|ref|YP_008604321.1| - 2.4e-13 50.2 3.7 5.2e-11 42.7 0.0 2.8 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|549455562|ref|YP_008604321.1| - 1.2e-11 44.0 11.0 1.2e-06 27.6 2.5 3.5 3 1 1 4 4 4 3 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|549455562|ref|YP_008604321.1| - 8.6e-11 41.5 7.2 1.2e-07 31.1 0.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.19 gi|549455562|ref|YP_008604321.1| - 2.4e-07 29.9 7.0 1.2e-06 27.7 0.2 3.2 3 1 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|549455562|ref|YP_008604321.1| - 3.2e-07 30.6 0.0 0.00014 22.0 0.0 2.5 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|549455562|ref|YP_008604321.1| - 6.2e-07 28.6 1.0 6.2e-07 28.6 0.7 2.6 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.9 gi|549455562|ref|YP_008604321.1| - 1.5e-05 23.7 6.4 0.00019 20.0 1.4 2.8 2 1 1 3 3 3 1 HI0933-like protein Thi4 PF01946.12 gi|549455562|ref|YP_008604321.1| - 0.0016 17.5 2.2 0.2 10.7 0.2 2.6 2 0 0 2 2 2 2 Thi4 family 3HCDH_N PF02737.13 gi|549455562|ref|YP_008604321.1| - 0.0025 17.5 1.0 0.25 10.9 0.0 2.7 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|549455562|ref|YP_008604321.1| - 0.0042 16.1 3.3 0.49 9.3 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_10 PF13460.1 gi|549455562|ref|YP_008604321.1| - 0.66 9.9 3.4 7.7 6.4 0.9 2.7 2 1 1 3 3 3 0 NADH(P)-binding NAD_binding_8 PF13450.1 gi|549455562|ref|YP_008604321.1| - 3.1 7.8 8.9 0.32 11.0 1.5 2.6 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain AsnC_trans_reg PF01037.16 gi|549455563|ref|YP_008604322.1| - 1.4e-15 56.7 0.4 2.1e-15 56.1 0.3 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|549455563|ref|YP_008604322.1| - 1.2e-14 53.4 1.1 1.8e-14 52.8 0.7 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|549455563|ref|YP_008604322.1| - 3.2e-14 52.1 2.0 3.6e-14 52.0 0.3 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|549455563|ref|YP_008604322.1| - 1.6e-07 30.9 0.1 4e-07 29.6 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|549455563|ref|YP_008604322.1| - 5.7e-07 29.0 2.6 1.3e-06 27.9 0.4 2.2 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|549455563|ref|YP_008604322.1| - 9.4e-06 25.3 0.0 2.1e-05 24.2 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|549455563|ref|YP_008604322.1| - 2.4e-05 23.9 0.2 4.3e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|549455563|ref|YP_008604322.1| - 6.5e-05 22.5 0.2 0.0001 21.9 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|549455563|ref|YP_008604322.1| - 7.6e-05 22.2 0.5 0.00016 21.1 0.3 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Mga PF08280.6 gi|549455563|ref|YP_008604322.1| - 0.00016 21.3 0.1 0.00029 20.5 0.1 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_27 PF13463.1 gi|549455563|ref|YP_008604322.1| - 0.00046 20.4 0.2 0.0011 19.2 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|549455563|ref|YP_008604322.1| - 0.00053 19.5 0.1 0.00078 19.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|549455563|ref|YP_008604322.1| - 0.0006 19.2 0.1 0.0012 18.2 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.5 gi|549455563|ref|YP_008604322.1| - 0.001 18.6 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|549455563|ref|YP_008604322.1| - 0.0011 19.0 0.1 0.0015 18.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain FeoC PF09012.5 gi|549455563|ref|YP_008604322.1| - 0.0014 18.3 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_34 PF13601.1 gi|549455563|ref|YP_008604322.1| - 0.0014 18.6 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|549455563|ref|YP_008604322.1| - 0.0029 16.9 0.3 0.0051 16.0 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|549455563|ref|YP_008604322.1| - 0.0035 17.4 0.3 0.01 15.9 0.0 1.9 2 1 0 2 2 2 1 Transcriptional regulator HTH_28 PF13518.1 gi|549455563|ref|YP_008604322.1| - 0.0042 17.0 0.3 0.012 15.5 0.1 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_8 PF02954.14 gi|549455563|ref|YP_008604322.1| - 0.016 14.7 0.1 0.037 13.5 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family DUF2250 PF10007.4 gi|549455563|ref|YP_008604322.1| - 0.019 14.8 0.1 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.14 gi|549455563|ref|YP_008604322.1| - 0.028 14.3 0.0 0.054 13.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain NapD PF03927.8 gi|549455563|ref|YP_008604322.1| - 0.029 14.1 0.3 0.049 13.4 0.2 1.3 1 0 0 1 1 1 0 NapD protein TFIIE_alpha PF02002.12 gi|549455563|ref|YP_008604322.1| - 0.031 13.7 0.1 0.065 12.7 0.1 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit DUF4423 PF14394.1 gi|549455563|ref|YP_008604322.1| - 0.033 13.7 0.0 0.07 12.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_1 PF00126.22 gi|549455563|ref|YP_008604322.1| - 0.038 13.7 0.0 0.07 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.7 gi|549455563|ref|YP_008604322.1| - 0.063 12.8 0.3 0.15 11.6 0.2 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_12 PF08461.5 gi|549455563|ref|YP_008604322.1| - 0.065 12.9 0.5 0.15 11.8 0.3 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_39 PF14090.1 gi|549455563|ref|YP_008604322.1| - 0.065 12.7 0.1 0.14 11.6 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|549455563|ref|YP_008604322.1| - 0.066 12.4 0.0 0.16 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_CodY PF08222.6 gi|549455563|ref|YP_008604322.1| - 0.083 12.2 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|549455563|ref|YP_008604322.1| - 0.1 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain AA_kinase PF00696.23 gi|549455564|ref|YP_008604323.1| - 1.6e-23 83.4 3.9 1.9e-23 83.2 2.7 1.0 1 0 0 1 1 1 1 Amino acid kinase family RE_BstXI PF09552.5 gi|549455564|ref|YP_008604323.1| - 0.17 10.8 0.4 0.41 9.6 0.1 1.6 2 0 0 2 2 2 0 BstXI restriction endonuclease Semialdhyde_dh PF01118.19 gi|549455565|ref|YP_008604324.1| - 7e-23 81.2 0.0 1.2e-22 80.4 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain TF_Zn_Ribbon PF08271.7 gi|549455566|ref|YP_008604325.1| - 0.017 14.4 1.5 0.031 13.5 1.1 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding Desulfoferrod_N PF06397.7 gi|549455566|ref|YP_008604325.1| - 0.028 13.8 0.7 5.6 6.4 0.3 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Prok-RING_1 PF14446.1 gi|549455566|ref|YP_008604325.1| - 0.078 12.7 0.2 0.1 12.3 0.1 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 RimK PF08443.6 gi|549455567|ref|YP_008604326.1| - 1.6e-37 128.8 0.0 2.1e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|549455567|ref|YP_008604326.1| - 3.6e-15 56.1 0.0 5.2e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|549455567|ref|YP_008604326.1| - 7.6e-07 28.1 0.0 2.1e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|549455567|ref|YP_008604326.1| - 4.6e-05 23.3 0.0 7.8e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|549455567|ref|YP_008604326.1| - 0.0045 16.2 0.0 0.016 14.5 0.0 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GSH-S_ATP PF02955.11 gi|549455567|ref|YP_008604326.1| - 0.01 15.0 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain GARS_A PF01071.14 gi|549455567|ref|YP_008604326.1| - 0.018 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|549455567|ref|YP_008604326.1| - 0.025 13.9 0.0 0.047 13.0 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Aminotran_3 PF00202.16 gi|549455568|ref|YP_008604327.1| - 1.7e-80 270.4 0.0 2.4e-80 269.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Peptidase_M20 PF01546.23 gi|549455569|ref|YP_008604328.1| - 2.6e-22 79.2 0.1 3.4e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|549455569|ref|YP_008604328.1| - 4.6e-11 42.4 0.1 8.1e-11 41.6 0.1 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain QueC PF06508.8 gi|549455570|ref|YP_008604329.1| - 1.6e-39 135.3 0.0 3.2e-39 134.4 0.0 1.5 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|549455570|ref|YP_008604329.1| - 0.00013 21.4 0.0 0.00016 21.1 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueF PF14489.1 gi|549455571|ref|YP_008604330.1| - 6.6e-10 38.8 0.0 7.5e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 QueF-like protein GTP_cyclohydroI PF01227.17 gi|549455571|ref|YP_008604330.1| - 0.00043 19.6 0.0 0.00044 19.5 0.0 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase I TPP_enzyme_C PF02775.16 gi|549455572|ref|YP_008604331.1| - 1.4e-29 102.6 0.2 2.2e-29 102.0 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|549455572|ref|YP_008604331.1| - 3.8e-12 45.9 0.6 2e-11 43.6 0.4 2.1 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Phage_DsbA PF11126.3 gi|549455572|ref|YP_008604331.1| - 0.13 12.3 0.0 1.3 9.1 0.0 2.4 3 0 0 3 3 3 0 Transcriptional regulator DsbA POR_N PF01855.14 gi|549455573|ref|YP_008604332.1| - 8.1e-57 192.3 0.1 1.5e-56 191.4 0.1 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|549455573|ref|YP_008604332.1| - 1.8e-39 135.4 0.1 3.7e-39 134.4 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|549455573|ref|YP_008604332.1| - 1.7e-08 34.4 0.0 9.4e-08 32.0 0.0 2.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|549455573|ref|YP_008604332.1| - 0.013 15.0 0.3 0.048 13.1 0.1 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PDZ PF00595.19 gi|549455573|ref|YP_008604332.1| - 0.038 14.1 0.0 0.11 12.7 0.0 1.8 1 0 0 1 1 1 0 PDZ domain (Also known as DHR or GLGF) DUF340 PF03956.8 gi|549455574|ref|YP_008604333.1| - 4.4e-45 153.3 23.5 2.1e-42 144.5 11.9 2.0 2 0 0 2 2 2 2 Membrane protein of unknown function (DUF340) DUF389 PF04087.9 gi|549455575|ref|YP_008604334.1| - 4.1e-25 88.3 21.2 3.9e-23 81.9 12.4 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF389) NUDIX PF00293.23 gi|549455576|ref|YP_008604335.1| - 1.2e-16 60.5 0.1 1.4e-16 60.3 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain DUF2240 PF09999.4 gi|549455576|ref|YP_008604335.1| - 0.11 11.8 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) tRNA_deacylase PF04414.7 gi|549455577|ref|YP_008604336.1| - 7.5e-65 218.0 0.0 9e-65 217.7 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase ECH PF00378.15 gi|549455578|ref|YP_008604337.1| - 2.9e-73 246.0 0.0 4.5e-73 245.4 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH_N PF02737.13 gi|549455578|ref|YP_008604337.1| - 5.8e-64 215.0 2.3 1.1e-63 214.1 1.6 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|549455578|ref|YP_008604337.1| - 5.2e-52 174.2 0.6 1.2e-25 89.7 0.1 2.7 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|549455578|ref|YP_008604337.1| - 0.00023 21.0 0.8 0.00034 20.4 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ECH_C PF13766.1 gi|549455578|ref|YP_008604337.1| - 0.0069 16.5 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region 2-Hacid_dh_C PF02826.14 gi|549455578|ref|YP_008604337.1| - 0.0076 15.4 0.6 0.042 12.9 0.1 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|549455578|ref|YP_008604337.1| - 0.05 13.9 0.0 0.23 11.7 0.0 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.18 gi|549455578|ref|YP_008604337.1| - 0.061 13.0 2.1 0.38 10.4 0.5 2.9 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PALP PF00291.20 gi|549455580|ref|YP_008604339.1| - 4.5e-50 170.6 1.6 6.2e-50 170.1 1.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DZR PF12773.2 gi|549455580|ref|YP_008604339.1| - 0.11 12.3 0.3 0.22 11.3 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon NAD_binding_7 PF13241.1 gi|549455581|ref|YP_008604340.1| - 1.8e-16 60.2 0.0 5.5e-16 58.7 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|549455581|ref|YP_008604340.1| - 0.00048 19.3 0.0 0.00089 18.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|549455581|ref|YP_008604340.1| - 0.014 15.4 1.2 0.023 14.7 0.8 1.5 1 1 0 1 1 1 0 NADH(P)-binding FAD_binding_2 PF00890.19 gi|549455581|ref|YP_008604340.1| - 0.015 14.1 2.6 0.015 14.1 1.8 1.3 1 1 0 1 1 1 0 FAD binding domain FAD_binding_3 PF01494.14 gi|549455581|ref|YP_008604340.1| - 0.022 13.8 1.9 0.035 13.1 1.3 1.3 1 0 0 1 1 1 0 FAD binding domain Shikimate_DH PF01488.15 gi|549455581|ref|YP_008604340.1| - 0.028 14.5 0.1 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|549455581|ref|YP_008604340.1| - 0.05 13.2 0.9 0.081 12.5 0.3 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|549455581|ref|YP_008604340.1| - 0.051 13.8 0.1 0.099 12.9 0.1 1.5 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|549455581|ref|YP_008604340.1| - 0.053 13.9 1.1 0.15 12.4 0.8 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PCMT PF01135.14 gi|549455581|ref|YP_008604340.1| - 0.054 13.0 0.4 0.09 12.2 0.3 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GFO_IDH_MocA PF01408.17 gi|549455581|ref|YP_008604340.1| - 0.087 13.3 0.1 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.11 gi|549455581|ref|YP_008604340.1| - 0.13 11.7 0.3 0.24 10.8 0.2 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.8 gi|549455581|ref|YP_008604340.1| - 0.15 11.2 0.2 0.21 10.8 0.2 1.3 1 0 0 1 1 1 0 NmrA-like family AlaDh_PNT_C PF01262.16 gi|549455581|ref|YP_008604340.1| - 0.35 10.4 2.2 1.6 8.2 0.5 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|549455581|ref|YP_008604340.1| - 0.76 9.6 4.1 2.3 8.0 2.6 2.0 2 0 0 2 2 2 0 ThiF family HEM4 PF02602.10 gi|549455582|ref|YP_008604341.1| - 1.3e-21 76.8 0.1 1.6e-21 76.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD ABC_sub_bind PF04392.7 gi|549455583|ref|YP_008604342.1| - 0.14 11.0 0.0 1.2 8.0 0.0 1.9 2 0 0 2 2 2 0 ABC transporter substrate binding protein Aldo_ket_red PF00248.16 gi|549455584|ref|YP_008604343.1| - 1.4e-42 145.5 0.0 1.5e-42 145.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Haem_oxygenas_2 PF14518.1 gi|549455584|ref|YP_008604343.1| - 0.028 14.5 0.1 0.082 13.0 0.0 1.9 2 0 0 2 2 2 0 Iron-containing redox enzyme RHH_1 PF01402.16 gi|549455585|ref|YP_008604344.1| - 4.2e-10 39.0 0.3 5.1e-10 38.8 0.2 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|549455585|ref|YP_008604344.1| - 4.9e-06 26.6 0.0 5.8e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|549455585|ref|YP_008604344.1| - 0.11 12.3 0.1 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) HTH_24 PF13412.1 gi|549455586|ref|YP_008604345.1| - 4.8e-05 22.6 0.2 0.077 12.3 0.1 2.9 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|549455586|ref|YP_008604345.1| - 0.0013 18.1 0.1 0.046 13.2 0.0 2.6 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|549455586|ref|YP_008604345.1| - 0.0094 15.6 0.2 0.072 12.7 0.0 2.5 3 0 0 3 3 3 1 MarR family LexA_DNA_bind PF01726.11 gi|549455586|ref|YP_008604345.1| - 0.11 12.1 0.0 1.3 8.6 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain PALP PF00291.20 gi|549455587|ref|YP_008604346.1| - 3.7e-79 266.1 3.9 5e-79 265.7 2.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|549455587|ref|YP_008604346.1| - 0.00059 19.2 0.0 0.0016 17.8 0.0 1.8 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|549455587|ref|YP_008604346.1| - 0.017 14.8 0.0 0.047 13.4 0.0 1.8 1 1 0 1 1 1 0 ACT domain ACT_4 PF13291.1 gi|549455587|ref|YP_008604346.1| - 0.043 14.1 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 ACT domain EAL PF00563.15 gi|549455587|ref|YP_008604346.1| - 0.049 13.1 0.0 0.091 12.2 0.0 1.4 1 0 0 1 1 1 0 EAL domain Ribonuc_L-PSP PF01042.16 gi|549455588|ref|YP_008604347.1| - 1.2e-39 134.7 0.0 1.4e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Methyltransf_18 PF12847.2 gi|549455589|ref|YP_008604348.1| - 8.9e-11 42.3 0.0 1.4e-10 41.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|549455589|ref|YP_008604348.1| - 1.9e-09 37.1 0.0 3.1e-07 29.9 0.0 2.1 1 1 1 2 2 2 1 Histone methylation protein DOT1 Methyltransf_25 PF13649.1 gi|549455589|ref|YP_008604348.1| - 6e-08 32.9 0.0 8e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|549455589|ref|YP_008604348.1| - 1.4e-07 31.2 0.1 3.1e-07 30.0 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|549455589|ref|YP_008604348.1| - 4.1e-07 30.3 0.0 5.3e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|549455589|ref|YP_008604348.1| - 6.4e-07 28.6 0.0 1.2e-06 27.8 0.0 1.3 1 1 1 2 2 2 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|549455589|ref|YP_008604348.1| - 8.1e-07 28.7 0.0 1.4e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|549455589|ref|YP_008604348.1| - 1.3e-05 24.6 0.0 1.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|549455589|ref|YP_008604348.1| - 2e-05 23.8 0.0 2.5e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|549455589|ref|YP_008604348.1| - 0.0003 20.8 0.0 0.00039 20.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|549455589|ref|YP_008604348.1| - 0.00052 19.6 0.0 0.00064 19.3 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|549455589|ref|YP_008604348.1| - 0.00054 20.3 0.0 0.00071 20.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|549455589|ref|YP_008604348.1| - 0.0012 17.9 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase DUF633 PF04816.7 gi|549455589|ref|YP_008604348.1| - 0.0014 17.9 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF633) CMAS PF02353.15 gi|549455589|ref|YP_008604348.1| - 0.0036 16.4 0.0 0.005 15.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|549455589|ref|YP_008604348.1| - 0.0066 15.6 0.0 0.0088 15.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.13 gi|549455589|ref|YP_008604348.1| - 0.049 12.8 0.0 0.067 12.3 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_15 PF09445.5 gi|549455589|ref|YP_008604348.1| - 0.049 13.1 0.0 0.056 12.9 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.1 gi|549455589|ref|YP_008604348.1| - 0.086 12.5 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_20 PF12147.3 gi|549455589|ref|YP_008604348.1| - 0.14 11.0 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase KaiC PF06745.8 gi|549455590|ref|YP_008604349.1| - 4.5e-86 287.6 0.0 5e-86 287.4 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|549455590|ref|YP_008604349.1| - 1.8e-08 34.0 0.0 2.4e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|549455590|ref|YP_008604349.1| - 3.6e-06 25.5 0.0 7.9e-06 24.4 0.0 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|549455590|ref|YP_008604349.1| - 0.01 15.5 0.0 0.029 14.1 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|549455590|ref|YP_008604349.1| - 0.042 12.7 0.0 0.065 12.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PPV_E1_C PF00519.12 gi|549455590|ref|YP_008604349.1| - 0.087 11.4 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase DnaB_C PF03796.10 gi|549455590|ref|YP_008604349.1| - 0.091 11.6 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DUF2075 PF09848.4 gi|549455590|ref|YP_008604349.1| - 0.12 11.2 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IMPDH PF00478.20 gi|549455591|ref|YP_008604350.1| - 1.2e-108 363.2 0.0 1.3e-108 363.0 0.0 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|549455591|ref|YP_008604350.1| - 2.9e-08 33.2 4.5 0.00091 18.4 2.0 2.9 3 0 0 3 3 3 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|549455591|ref|YP_008604350.1| - 3.3e-07 29.5 6.7 9.2e-07 28.0 3.9 2.1 1 1 1 2 2 2 1 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|549455591|ref|YP_008604350.1| - 1.9e-05 23.7 1.4 3.3e-05 22.9 1.0 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|549455591|ref|YP_008604350.1| - 2e-05 23.7 2.5 3e-05 23.1 1.7 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.9 gi|549455591|ref|YP_008604350.1| - 0.0058 15.7 2.6 0.023 13.7 1.2 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|549455591|ref|YP_008604350.1| - 0.0074 15.5 2.7 0.047 12.9 1.9 2.0 1 1 0 1 1 1 1 Histidine biosynthesis protein NeuB PF03102.9 gi|549455591|ref|YP_008604350.1| - 0.17 10.9 0.0 0.42 9.7 0.0 1.6 2 0 0 2 2 2 0 NeuB family DUF296 PF03479.10 gi|549455592|ref|YP_008604351.1| - 3.4e-22 78.3 0.5 4.2e-22 78.0 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF296) CBS PF00571.23 gi|549455593|ref|YP_008604352.1| - 9.9e-13 47.6 0.6 4.6e-06 26.3 0.0 3.9 4 0 0 4 4 4 3 CBS domain GHMP_kinases_C PF08544.8 gi|549455594|ref|YP_008604353.1| - 0.00011 22.3 0.0 0.00026 21.1 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|549455594|ref|YP_008604353.1| - 0.00057 19.9 2.0 0.0013 18.7 1.4 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain NTP_transf_3 PF12804.2 gi|549455595|ref|YP_008604354.1| - 5.8e-10 39.4 0.1 8.5e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|549455595|ref|YP_008604354.1| - 0.043 13.0 0.0 0.067 12.4 0.0 1.4 2 0 0 2 2 2 0 Nucleotidyl transferase CDP-OH_P_transf PF01066.16 gi|549455596|ref|YP_008604355.1| - 9.6e-17 61.1 9.0 1.1e-16 60.9 5.0 2.1 2 1 1 3 3 3 1 CDP-alcohol phosphatidyltransferase NAD_binding_5 PF07994.7 gi|549455597|ref|YP_008604356.1| - 1.2e-42 146.4 0.0 1.4e-42 146.2 0.0 1.0 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|549455597|ref|YP_008604356.1| - 2.1e-24 85.5 0.0 3e-24 84.9 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase zf-Tim10_DDP PF02953.10 gi|549455598|ref|YP_008604357.1| - 0.00045 19.4 1.7 0.093 12.0 0.1 2.2 2 0 0 2 2 2 2 Tim10/DDP family zinc finger Antimicrobial21 PF14861.1 gi|549455598|ref|YP_008604357.1| - 0.00047 19.5 5.5 0.00085 18.7 3.8 1.4 1 0 0 1 1 1 1 Plant antimicrobial peptide UPF0047 PF01894.12 gi|549455599|ref|YP_008604358.1| - 1e-33 115.6 0.0 1.2e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Rep_fac_C PF08542.6 gi|549455600|ref|YP_008604359.1| - 7.4e-21 73.9 0.0 2.7e-20 72.1 0.0 2.0 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|549455600|ref|YP_008604359.1| - 2.3e-16 60.1 0.0 4.5e-16 59.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|549455600|ref|YP_008604359.1| - 1.8e-15 56.9 0.1 2.3e-13 50.1 0.1 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|549455600|ref|YP_008604359.1| - 1.2e-10 40.7 0.0 4.9e-07 28.8 0.0 2.2 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|549455600|ref|YP_008604359.1| - 4.4e-09 35.7 0.1 1.3e-08 34.2 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|549455600|ref|YP_008604359.1| - 1.6e-08 34.7 0.1 0.0021 18.1 0.0 3.0 2 2 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|549455600|ref|YP_008604359.1| - 4.7e-08 33.2 0.1 0.00045 20.2 0.0 3.3 2 2 1 3 3 3 2 AAA ATPase domain AAA_3 PF07726.6 gi|549455600|ref|YP_008604359.1| - 2.6e-07 30.3 0.0 5.6e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|549455600|ref|YP_008604359.1| - 1.9e-06 27.8 0.0 3.9e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|549455600|ref|YP_008604359.1| - 2.8e-06 27.6 0.1 2.7e-05 24.4 0.0 2.5 2 1 0 2 2 1 1 AAA domain DNA_pol3_delta PF06144.8 gi|549455600|ref|YP_008604359.1| - 1e-05 25.1 0.0 5.4e-05 22.7 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase III, delta subunit FtsK_SpoIIIE PF01580.13 gi|549455600|ref|YP_008604359.1| - 1.4e-05 24.7 0.2 6e-05 22.6 0.0 2.1 2 1 1 3 3 3 1 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|549455600|ref|YP_008604359.1| - 1.5e-05 24.7 0.0 9.4e-05 22.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|549455600|ref|YP_008604359.1| - 2.2e-05 23.3 0.0 0.036 12.7 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|549455600|ref|YP_008604359.1| - 5.5e-05 22.6 0.0 0.00011 21.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|549455600|ref|YP_008604359.1| - 7.6e-05 23.5 0.0 0.00026 21.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|549455600|ref|YP_008604359.1| - 9e-05 22.1 0.0 0.00027 20.6 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|549455600|ref|YP_008604359.1| - 0.00015 21.2 0.0 0.051 12.9 0.0 2.7 1 1 1 3 3 3 1 AAA-like domain Mg_chelatase PF01078.16 gi|549455600|ref|YP_008604359.1| - 0.00019 20.6 0.0 0.0058 15.8 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|549455600|ref|YP_008604359.1| - 0.00021 20.7 2.3 0.011 15.1 0.3 3.4 1 1 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|549455600|ref|YP_008604359.1| - 0.00034 20.6 0.1 0.0018 18.3 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain KTI12 PF08433.5 gi|549455600|ref|YP_008604359.1| - 0.00051 19.3 0.0 0.00097 18.4 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 PhoH PF02562.11 gi|549455600|ref|YP_008604359.1| - 0.00066 18.9 0.1 0.17 11.1 0.0 2.3 1 1 1 2 2 2 1 PhoH-like protein DUF815 PF05673.8 gi|549455600|ref|YP_008604359.1| - 0.00075 18.4 0.0 0.0015 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) T2SE PF00437.15 gi|549455600|ref|YP_008604359.1| - 0.00077 18.4 0.0 0.007 15.2 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.1 gi|549455600|ref|YP_008604359.1| - 0.00099 19.0 0.0 0.0025 17.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|549455600|ref|YP_008604359.1| - 0.0011 18.9 0.0 0.0039 17.1 0.0 2.0 1 1 1 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|549455600|ref|YP_008604359.1| - 0.0035 17.0 0.0 0.06 13.0 0.0 2.1 1 1 1 2 2 2 1 Archaeal ATPase ResIII PF04851.10 gi|549455600|ref|YP_008604359.1| - 0.0039 17.0 0.0 0.0095 15.7 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Sigma54_activat PF00158.21 gi|549455600|ref|YP_008604359.1| - 0.0047 16.4 0.1 0.17 11.3 0.0 2.6 3 0 0 3 3 2 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|549455600|ref|YP_008604359.1| - 0.0049 17.0 0.0 0.011 15.9 0.0 1.7 1 1 0 1 1 1 1 RNA helicase AAA_2 PF07724.9 gi|549455600|ref|YP_008604359.1| - 0.0052 16.7 0.0 0.029 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.7 gi|549455600|ref|YP_008604359.1| - 0.0071 15.4 0.0 0.022 13.8 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin Viral_helicase1 PF01443.13 gi|549455600|ref|YP_008604359.1| - 0.0073 15.8 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase DEAD PF00270.24 gi|549455600|ref|YP_008604359.1| - 0.0089 15.5 0.1 3.1 7.2 0.0 2.4 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_11 PF13086.1 gi|549455600|ref|YP_008604359.1| - 0.0094 15.5 0.0 0.023 14.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|549455600|ref|YP_008604359.1| - 0.012 15.2 0.3 0.11 12.0 0.0 2.6 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|549455600|ref|YP_008604359.1| - 0.018 14.0 0.0 0.11 11.3 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SNF2_N PF00176.18 gi|549455600|ref|YP_008604359.1| - 0.021 13.6 0.0 2.7 6.6 0.0 2.1 1 1 1 2 2 2 0 SNF2 family N-terminal domain DNA_pol3_gamma3 PF12169.3 gi|549455600|ref|YP_008604359.1| - 0.025 14.3 0.8 4.9 6.8 0.1 3.2 3 0 0 3 3 3 0 DNA polymerase III subunits gamma and tau domain III NTPase_1 PF03266.10 gi|549455600|ref|YP_008604359.1| - 0.026 14.2 0.0 0.21 11.2 0.0 2.1 1 1 1 2 2 2 0 NTPase NACHT PF05729.7 gi|549455600|ref|YP_008604359.1| - 0.03 13.9 0.0 0.16 11.6 0.0 2.1 1 1 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|549455600|ref|YP_008604359.1| - 0.034 13.6 0.0 0.073 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain APS_kinase PF01583.15 gi|549455600|ref|YP_008604359.1| - 0.037 13.6 0.0 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase TrwB_AAD_bind PF10412.4 gi|549455600|ref|YP_008604359.1| - 0.048 12.2 0.0 0.11 11.0 0.0 1.6 2 0 0 2 2 1 0 Type IV secretion-system coupling protein DNA-binding domain KaiC PF06745.8 gi|549455600|ref|YP_008604359.1| - 0.059 12.4 0.0 0.24 10.4 0.0 1.9 1 1 1 2 2 2 0 KaiC Torsin PF06309.6 gi|549455600|ref|YP_008604359.1| - 0.067 13.0 0.0 0.22 11.4 0.0 1.8 2 0 0 2 2 1 0 Torsin SRP54 PF00448.17 gi|549455600|ref|YP_008604359.1| - 0.097 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AraC_N PF06719.8 gi|549455600|ref|YP_008604359.1| - 0.098 11.9 0.2 0.98 8.7 0.0 2.3 3 0 0 3 3 2 0 AraC-type transcriptional regulator N-terminus AAA_23 PF13476.1 gi|549455600|ref|YP_008604359.1| - 0.11 12.8 0.0 0.17 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|549455600|ref|YP_008604359.1| - 0.13 11.9 0.0 0.39 10.4 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|549455601|ref|YP_008604360.1| - 2e-17 63.6 0.0 5.1e-17 62.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|549455601|ref|YP_008604360.1| - 4.7e-11 42.0 0.0 0.00014 20.7 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|549455601|ref|YP_008604360.1| - 2e-10 40.1 0.0 1.9e-08 33.6 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|549455601|ref|YP_008604360.1| - 4e-07 30.0 0.0 8.1e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|549455601|ref|YP_008604360.1| - 9.2e-07 29.7 0.1 6.6e-06 26.9 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|549455601|ref|YP_008604360.1| - 1.3e-06 28.5 0.1 7.3e-05 22.8 0.0 3.0 2 1 1 3 3 3 1 AAA ATPase domain DNA_pol3_delta PF06144.8 gi|549455601|ref|YP_008604360.1| - 1.6e-06 27.7 0.0 3.3e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.1 gi|549455601|ref|YP_008604360.1| - 4.2e-06 26.9 0.0 0.00013 22.1 0.0 2.7 1 1 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|549455601|ref|YP_008604360.1| - 5.5e-06 26.1 0.0 2e-05 24.3 0.0 1.9 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_5 PF07728.9 gi|549455601|ref|YP_008604360.1| - 5.8e-06 26.0 0.0 1.4e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|549455601|ref|YP_008604360.1| - 6.4e-06 25.2 0.0 3.3e-05 22.9 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|549455601|ref|YP_008604360.1| - 3.8e-05 23.5 0.0 7.4e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|549455601|ref|YP_008604360.1| - 0.00011 21.3 0.0 0.0002 20.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin TIP49 PF06068.8 gi|549455601|ref|YP_008604360.1| - 0.00031 19.5 0.1 0.24 10.0 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|549455601|ref|YP_008604360.1| - 0.00068 19.0 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|549455601|ref|YP_008604360.1| - 0.0019 17.9 0.0 0.0077 15.9 0.0 2.0 1 1 0 1 1 1 1 Archaeal ATPase RNA_helicase PF00910.17 gi|549455601|ref|YP_008604360.1| - 0.0019 18.3 0.0 0.0055 16.8 0.0 1.8 1 0 0 1 1 1 1 RNA helicase Parvo_NS1 PF01057.12 gi|549455601|ref|YP_008604360.1| - 0.0075 15.1 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_24 PF13479.1 gi|549455601|ref|YP_008604360.1| - 0.008 15.7 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|549455601|ref|YP_008604360.1| - 0.011 14.9 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|549455601|ref|YP_008604360.1| - 0.011 16.0 0.1 0.041 14.1 0.0 2.0 3 0 0 3 3 1 0 AAA domain NACHT PF05729.7 gi|549455601|ref|YP_008604360.1| - 0.011 15.3 0.0 0.21 11.2 0.0 2.7 3 0 0 3 3 2 0 NACHT domain AAA_25 PF13481.1 gi|549455601|ref|YP_008604360.1| - 0.017 14.5 0.1 0.074 12.4 0.0 2.1 3 0 0 3 3 2 0 AAA domain AAA_29 PF13555.1 gi|549455601|ref|YP_008604360.1| - 0.022 14.2 0.0 0.059 12.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_3 PF07726.6 gi|549455601|ref|YP_008604360.1| - 0.025 14.1 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|549455601|ref|YP_008604360.1| - 0.031 14.1 0.0 0.08 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|549455601|ref|YP_008604360.1| - 0.04 14.2 0.0 0.14 12.4 0.0 1.9 2 0 0 2 2 1 0 ABC transporter AAA_28 PF13521.1 gi|549455601|ref|YP_008604360.1| - 0.054 13.4 0.0 0.16 11.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|549455601|ref|YP_008604360.1| - 0.054 13.4 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|549455601|ref|YP_008604360.1| - 0.07 12.8 0.0 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|549455601|ref|YP_008604360.1| - 0.085 11.7 0.0 0.3 9.9 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain KAP_NTPase PF07693.9 gi|549455601|ref|YP_008604360.1| - 0.15 11.0 0.0 0.18 10.8 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain B5 PF03484.10 gi|549455602|ref|YP_008604361.1| - 0.061 13.1 0.0 0.088 12.6 0.0 1.4 1 1 0 1 1 1 0 tRNA synthetase B5 domain CDP-OH_P_transf PF01066.16 gi|549455603|ref|YP_008604362.1| - 1.8e-12 47.4 9.2 5.3e-12 45.9 6.4 1.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Glyco_trans_4_4 PF13579.1 gi|549455604|ref|YP_008604363.1| - 8.1e-06 26.0 4.6 8.8e-06 25.9 0.1 2.7 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|549455604|ref|YP_008604363.1| - 0.004 16.8 0.0 0.11 12.1 0.0 2.3 2 0 0 2 2 2 1 Glycosyltransferase Family 4 FUN14 PF04930.10 gi|549455605|ref|YP_008604364.1| - 4.2e-18 65.4 6.2 5.5e-18 65.0 4.3 1.2 1 0 0 1 1 1 1 FUN14 family DUF3464 PF11947.3 gi|549455605|ref|YP_008604364.1| - 0.0037 16.7 1.7 0.0037 16.7 1.2 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF3464) Radical_SAM PF04055.16 gi|549455606|ref|YP_008604365.1| - 1.2e-28 100.3 0.4 3e-28 99.0 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|549455606|ref|YP_008604365.1| - 1e-20 73.3 0.0 2.1e-20 72.3 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|549455606|ref|YP_008604365.1| - 2.6e-12 46.3 0.0 4.9e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 TRAM domain VARLMGL PF14383.1 gi|549455606|ref|YP_008604365.1| - 0.3 10.2 1.6 0.84 8.8 1.1 1.7 1 0 0 1 1 1 0 DUF761-associated sequence motif eIF-5_eIF-2B PF01873.12 gi|549455607|ref|YP_008604366.1| - 7.1e-32 109.6 0.1 8.5e-32 109.4 0.1 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Zn_Tnp_IS1595 PF12760.2 gi|549455607|ref|YP_008604366.1| - 0.0062 16.3 0.2 0.011 15.5 0.2 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Elf1 PF05129.8 gi|549455607|ref|YP_008604366.1| - 0.0073 15.9 0.4 0.011 15.3 0.2 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|549455607|ref|YP_008604366.1| - 0.011 15.3 0.9 0.02 14.5 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|549455607|ref|YP_008604366.1| - 0.015 15.1 0.6 0.03 14.2 0.4 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.1 gi|549455607|ref|YP_008604366.1| - 0.015 15.5 0.6 0.037 14.3 0.4 1.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF3797 PF12677.2 gi|549455607|ref|YP_008604366.1| - 0.031 13.9 1.8 0.3 10.7 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.1 gi|549455607|ref|YP_008604366.1| - 0.055 12.7 1.4 7.5 5.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|549455607|ref|YP_008604366.1| - 0.076 12.3 0.6 0.15 11.4 0.4 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding SUI1 PF01253.17 gi|549455607|ref|YP_008604366.1| - 0.077 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor SUI1 Ribosomal_S27e PF01667.12 gi|549455607|ref|YP_008604366.1| - 0.083 12.4 0.2 0.17 11.4 0.2 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 zinc_ribbon_5 PF13719.1 gi|549455607|ref|YP_008604366.1| - 0.093 12.3 3.1 4.3 6.9 1.8 2.9 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|549455607|ref|YP_008604366.1| - 0.097 12.3 3.4 4.9 6.9 1.9 3.0 2 1 0 2 2 2 0 zinc-ribbon domain Myb_DNA-bind_6 PF13921.1 gi|549455607|ref|YP_008604366.1| - 0.15 12.2 0.2 0.27 11.3 0.1 1.7 1 1 0 1 1 1 0 Myb-like DNA-binding domain zf-NADH-PPase PF09297.6 gi|549455607|ref|YP_008604366.1| - 0.32 10.5 3.0 2.2 7.8 2.1 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|549455607|ref|YP_008604366.1| - 0.39 10.5 2.0 1.7 8.5 0.0 2.7 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like DUF1451 PF07295.6 gi|549455607|ref|YP_008604366.1| - 0.44 10.3 3.8 11 5.8 2.6 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1451) Zn-ribbon_8 PF09723.5 gi|549455607|ref|YP_008604366.1| - 0.5 10.3 4.0 13 5.8 0.2 2.2 1 1 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|549455607|ref|YP_008604366.1| - 5.3 6.8 5.9 2 8.1 0.9 2.4 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit Acetyltransf_6 PF13480.1 gi|549455608|ref|YP_008604367.1| - 0.0031 17.4 1.5 0.0031 17.4 1.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Radical_SAM PF04055.16 gi|549455609|ref|YP_008604368.1| - 4.3e-10 40.0 0.0 7.5e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|549455609|ref|YP_008604368.1| - 4.3e-07 30.1 0.0 7.1e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|549455609|ref|YP_008604368.1| - 6.2e-06 26.2 0.0 1.1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TIM PF00121.13 gi|549455610|ref|YP_008604369.1| - 1.7e-20 73.1 0.0 1.9e-18 66.4 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase IGPS PF00218.16 gi|549455610|ref|YP_008604369.1| - 4.9e-07 29.0 0.2 1.3e-06 27.7 0.1 1.6 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase ThiG PF05690.9 gi|549455610|ref|YP_008604369.1| - 6.2e-07 28.7 2.1 9.2e-07 28.1 0.8 1.8 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|549455610|ref|YP_008604369.1| - 0.00039 19.7 1.0 0.0013 18.0 0.6 1.8 1 1 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|549455610|ref|YP_008604369.1| - 0.0012 18.2 0.2 0.0021 17.3 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.10 gi|549455610|ref|YP_008604369.1| - 0.0015 17.7 3.6 0.0018 17.5 2.5 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|549455610|ref|YP_008604369.1| - 0.0022 16.9 1.4 0.0022 16.9 1.0 1.4 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.9 gi|549455610|ref|YP_008604369.1| - 0.0078 15.2 0.4 0.014 14.3 0.3 1.5 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Methyltransf_18 PF12847.2 gi|549455610|ref|YP_008604369.1| - 0.13 12.8 0.0 0.71 10.4 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Helicase_RecD PF05127.9 gi|549455612|ref|YP_008604371.1| - 1.5e-37 128.9 0.0 2.9e-37 128.0 0.0 1.5 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|549455612|ref|YP_008604371.1| - 1.1e-21 77.1 0.6 2.9e-18 65.9 0.4 3.2 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Acetyltransf_1 PF00583.19 gi|549455612|ref|YP_008604371.1| - 6.2e-09 35.7 0.0 1.9e-08 34.2 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|549455612|ref|YP_008604371.1| - 8.7e-07 29.0 0.0 2.1e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|549455612|ref|YP_008604371.1| - 1.7e-06 28.1 0.1 7.7e-06 26.0 0.1 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_30 PF13604.1 gi|549455612|ref|YP_008604371.1| - 3.3e-05 23.5 0.0 6.8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|549455612|ref|YP_008604371.1| - 0.017 15.1 0.2 0.067 13.1 0.1 2.1 1 0 0 1 1 1 0 AAA ATPase domain FR47 PF08445.5 gi|549455612|ref|YP_008604371.1| - 0.088 12.5 0.3 0.3 10.8 0.0 2.0 2 0 0 2 2 2 0 FR47-like protein Acetyltransf_9 PF13527.1 gi|549455612|ref|YP_008604371.1| - 0.11 12.4 0.0 0.31 10.9 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA_19 PF13245.1 gi|549455612|ref|YP_008604371.1| - 0.13 12.0 2.0 0.26 11.0 0.4 2.4 2 0 0 2 2 2 0 Part of AAA domain DUF996 PF06195.8 gi|549455613|ref|YP_008604372.1| - 1.9e-29 102.4 19.9 1.9e-29 102.4 13.8 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF996) UCR_UQCRX_QCR9 PF05365.7 gi|549455613|ref|YP_008604372.1| - 1.7 8.3 4.2 0.39 10.3 0.1 2.0 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DUF805 PF05656.9 gi|549455613|ref|YP_008604372.1| - 2 8.2 18.6 0.07 12.9 6.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF805) DUF373 PF04123.8 gi|549455613|ref|YP_008604372.1| - 2.9 6.8 19.0 5.8 5.8 13.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF373) DUF2975 PF11188.3 gi|549455613|ref|YP_008604372.1| - 8.3 6.1 22.7 0.29 10.8 9.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) DUF2269 PF10027.4 gi|549455614|ref|YP_008604373.1| - 5.4e-06 26.2 11.6 1.5e-05 24.8 8.0 1.8 1 1 0 1 1 1 1 Predicted integral membrane protein (DUF2269) UPF0093 PF03653.8 gi|549455614|ref|YP_008604373.1| - 0.031 14.2 5.4 0.36 10.7 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0093) Ni_hydr_CYTB PF01292.15 gi|549455614|ref|YP_008604373.1| - 0.061 12.7 10.1 0.075 12.4 7.0 1.2 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 EMP70 PF02990.11 gi|549455614|ref|YP_008604373.1| - 0.11 10.8 1.1 0.16 10.3 0.8 1.2 1 0 0 1 1 1 0 Endomembrane protein 70 CopD PF05425.8 gi|549455614|ref|YP_008604373.1| - 0.29 11.3 22.7 2.5 8.3 15.3 2.3 1 1 0 1 1 1 0 Copper resistance protein D EmrE PF13536.1 gi|549455614|ref|YP_008604373.1| - 1 9.5 6.7 2 8.6 4.6 1.4 1 1 0 1 1 1 0 Multidrug resistance efflux transporter DUF998 PF06197.8 gi|549455614|ref|YP_008604373.1| - 2 7.6 18.0 0.18 11.1 4.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF998) DUF2306 PF10067.4 gi|549455614|ref|YP_008604373.1| - 8.5 6.5 11.9 3.2 7.9 3.9 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2306) Peptidase_S9 PF00326.16 gi|549455615|ref|YP_008604374.1| - 5.6e-41 140.0 0.0 8.4e-41 139.5 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|549455615|ref|YP_008604374.1| - 1.2e-18 67.8 2.2 2e-17 63.8 1.5 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|549455615|ref|YP_008604374.1| - 9.8e-16 57.8 0.0 1.7e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|549455615|ref|YP_008604374.1| - 4.8e-07 29.4 0.0 1.4e-05 24.6 0.3 1.9 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|549455615|ref|YP_008604374.1| - 6.2e-06 25.6 0.2 0.00013 21.2 0.0 2.6 2 1 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|549455615|ref|YP_008604374.1| - 7.9e-06 25.5 0.1 1.8e-05 24.4 0.1 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|549455615|ref|YP_008604374.1| - 0.00018 21.3 0.0 0.00055 19.7 0.0 1.8 2 0 0 2 2 2 1 Putative lysophospholipase Abhydrolase_3 PF07859.8 gi|549455615|ref|YP_008604374.1| - 0.00064 19.3 0.3 0.0066 16.0 0.2 2.4 2 1 0 2 2 2 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|549455615|ref|YP_008604374.1| - 0.14 10.8 0.1 0.25 9.9 0.1 1.3 1 1 0 1 1 1 0 Carboxylesterase family ABC_tran PF00005.22 gi|549455616|ref|YP_008604375.1| - 1.2e-27 96.8 0.0 1.5e-27 96.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455616|ref|YP_008604375.1| - 3.6e-15 56.7 0.0 1.1e-08 35.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|549455616|ref|YP_008604375.1| - 2.2e-05 23.8 0.0 0.16 11.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|549455616|ref|YP_008604375.1| - 0.00021 21.3 0.3 0.00067 19.6 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|549455616|ref|YP_008604375.1| - 0.00069 19.0 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|549455616|ref|YP_008604375.1| - 0.0011 18.8 0.0 0.014 15.2 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|549455616|ref|YP_008604375.1| - 0.0024 18.6 0.0 0.005 17.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|549455616|ref|YP_008604375.1| - 0.0049 16.3 0.0 0.0061 16.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|549455616|ref|YP_008604375.1| - 0.0089 15.6 0.1 0.028 13.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|549455616|ref|YP_008604375.1| - 0.01 15.5 1.1 0.029 14.1 0.0 2.3 2 1 1 3 3 3 0 Part of AAA domain NACHT PF05729.7 gi|549455616|ref|YP_008604375.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA PF00004.24 gi|549455616|ref|YP_008604375.1| - 0.011 15.9 0.0 0.035 14.3 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|549455616|ref|YP_008604375.1| - 0.016 15.1 0.0 0.032 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|549455616|ref|YP_008604375.1| - 0.018 14.7 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|549455616|ref|YP_008604375.1| - 0.018 15.1 0.1 0.038 14.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain PaaX_C PF08223.6 gi|549455616|ref|YP_008604375.1| - 0.018 14.7 0.1 0.027 14.1 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein C-terminal domain AAA_23 PF13476.1 gi|549455616|ref|YP_008604375.1| - 0.019 15.2 0.0 0.028 14.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|549455616|ref|YP_008604375.1| - 0.035 13.1 0.0 0.73 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|549455616|ref|YP_008604375.1| - 0.048 13.0 0.2 0.1 11.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|549455616|ref|YP_008604375.1| - 0.048 13.0 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|549455616|ref|YP_008604375.1| - 0.056 13.1 0.0 0.42 10.3 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_10 PF12846.2 gi|549455616|ref|YP_008604375.1| - 0.061 12.7 0.1 0.1 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain Mg_chelatase PF01078.16 gi|549455616|ref|YP_008604375.1| - 0.1 11.7 0.1 0.7 9.0 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|549455616|ref|YP_008604375.1| - 0.12 12.1 0.1 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.14 gi|549455616|ref|YP_008604375.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|549455616|ref|YP_008604375.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase DUF3584 PF12128.3 gi|549455616|ref|YP_008604375.1| - 0.13 9.5 0.1 0.17 9.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_24 PF13479.1 gi|549455616|ref|YP_008604375.1| - 0.19 11.2 0.0 0.35 10.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.2 gi|549455617|ref|YP_008604376.1| - 9.6e-14 51.1 2.7 1.6e-13 50.3 1.9 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|549455617|ref|YP_008604376.1| - 2.2e-05 23.7 9.8 3.8e-05 22.9 4.1 2.2 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|549455617|ref|YP_008604376.1| - 0.12 11.5 15.7 0.32 10.1 10.9 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein Voltage_CLC PF00654.15 gi|549455618|ref|YP_008604377.1| - 8.8e-73 245.3 26.5 8.8e-73 245.3 18.3 1.9 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.23 gi|549455618|ref|YP_008604377.1| - 9.7e-15 54.0 0.9 3.4e-06 26.7 0.0 2.5 2 0 0 2 2 2 2 CBS domain PGM_PMM_I PF02878.11 gi|549455618|ref|YP_008604377.1| - 0.053 13.0 0.0 0.16 11.4 0.0 1.8 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ADH_zinc_N PF00107.21 gi|549455619|ref|YP_008604378.1| - 2.5e-18 65.8 0.5 5.9e-18 64.6 0.0 1.9 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|549455619|ref|YP_008604378.1| - 7.7e-11 42.9 0.1 1.3e-10 42.2 0.0 1.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|549455619|ref|YP_008604378.1| - 2e-10 40.3 0.1 4e-08 32.9 0.0 3.0 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ELFV_dehydrog PF00208.16 gi|549455619|ref|YP_008604378.1| - 0.047 13.2 0.2 0.064 12.8 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DUF3049 PF11250.3 gi|549455619|ref|YP_008604378.1| - 0.25 11.1 2.3 0.8 9.5 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3049) Lactamase_B PF00753.22 gi|549455620|ref|YP_008604379.1| - 1.9e-14 53.8 0.2 7.7e-14 51.7 0.0 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|549455620|ref|YP_008604379.1| - 0.00076 19.2 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|549455620|ref|YP_008604379.1| - 0.0012 18.4 0.1 0.0017 17.9 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain zf-CDGSH PF09360.5 gi|549455621|ref|YP_008604380.1| - 3.2e-16 58.8 0.6 4.4e-16 58.4 0.4 1.2 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type DUF2201_N PF13203.1 gi|549455622|ref|YP_008604381.1| - 0.03 13.4 0.0 0.041 13.0 0.0 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain UPF0278 PF08745.6 gi|549455624|ref|YP_008604383.1| - 7.7e-68 227.7 1.9 9.4e-68 227.5 1.3 1.0 1 0 0 1 1 1 1 UPF0278 family DNA_ligase_A_M PF01068.16 gi|549455625|ref|YP_008604384.1| - 4.3e-13 49.0 0.0 8.5e-13 48.1 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|549455625|ref|YP_008604384.1| - 0.0023 17.7 0.0 0.0071 16.1 0.0 1.7 1 1 0 1 1 1 1 RNA ligase Hydrolase PF00702.21 gi|549455628|ref|YP_008604387.1| - 6.3e-53 180.3 0.9 6.3e-53 180.3 0.6 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|549455628|ref|YP_008604387.1| - 5.7e-50 169.5 2.5 1e-49 168.6 1.7 1.5 1 0 0 1 1 1 1 E1-E2 ATPase HAD PF12710.2 gi|549455628|ref|YP_008604387.1| - 1.2e-19 71.2 0.0 2.4e-19 70.2 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|549455628|ref|YP_008604387.1| - 4.8e-08 32.8 0.1 0.003 17.1 0.1 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase UbiA PF01040.13 gi|549455629|ref|YP_008604388.1| - 7.1e-30 104.0 23.7 8.5e-30 103.8 16.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family UbiD PF01977.11 gi|549455630|ref|YP_008604389.1| - 3.4e-135 450.6 0.0 3.9e-135 450.4 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TIR_2 PF13676.1 gi|549455631|ref|YP_008604390.1| - 0.1 12.7 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 TIR domain Flg_hook PF02120.11 gi|549455632|ref|YP_008604391.1| - 0.033 13.8 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 Flagellar hook-length control protein FliK PEMT PF04191.8 gi|549455633|ref|YP_008604392.1| - 1.9e-15 56.8 3.5 9.9e-15 54.5 2.4 2.1 1 1 0 1 1 1 1 Phospholipid methyltransferase ICMT PF04140.9 gi|549455633|ref|YP_008604392.1| - 1.9e-05 24.7 4.1 3.5e-05 23.9 0.1 2.6 2 1 1 3 3 3 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.12 gi|549455633|ref|YP_008604392.1| - 0.024 13.1 0.1 0.04 12.4 0.1 1.3 1 0 0 1 1 1 0 Ergosterol biosynthesis ERG4/ERG24 family ABC_tran PF00005.22 gi|549455635|ref|YP_008604394.1| - 7.8e-27 94.2 0.0 1.2e-26 93.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|549455635|ref|YP_008604394.1| - 1.7e-18 66.7 0.3 3.4e-18 65.7 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|549455635|ref|YP_008604394.1| - 5e-09 36.5 0.1 3.1e-05 24.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|549455635|ref|YP_008604394.1| - 0.00037 20.5 0.2 0.00067 19.6 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|549455635|ref|YP_008604394.1| - 0.0012 18.3 0.1 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|549455635|ref|YP_008604394.1| - 0.0095 15.3 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|549455635|ref|YP_008604394.1| - 0.012 15.0 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|549455635|ref|YP_008604394.1| - 0.014 15.5 0.8 0.065 13.3 0.5 2.1 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|549455635|ref|YP_008604394.1| - 0.016 14.7 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|549455635|ref|YP_008604394.1| - 0.021 14.4 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|549455635|ref|YP_008604394.1| - 0.025 14.7 0.0 0.049 13.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|549455635|ref|YP_008604394.1| - 0.056 12.8 0.2 0.14 11.5 0.1 1.7 1 1 1 2 2 2 0 AAA-like domain AAA_5 PF07728.9 gi|549455635|ref|YP_008604394.1| - 0.062 13.0 0.1 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|549455635|ref|YP_008604394.1| - 0.076 12.7 0.2 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|549455635|ref|YP_008604394.1| - 0.088 12.4 0.1 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|549455635|ref|YP_008604394.1| - 0.097 11.8 0.1 3.9 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ResIII PF04851.10 gi|549455635|ref|YP_008604394.1| - 0.1 12.4 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_23 PF13476.1 gi|549455635|ref|YP_008604394.1| - 0.1 12.8 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|549455635|ref|YP_008604394.1| - 0.12 12.1 0.0 0.35 10.6 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|549455635|ref|YP_008604394.1| - 0.12 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|549455636|ref|YP_008604395.1| - 1e-29 103.6 0.0 1.3e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|549455636|ref|YP_008604395.1| - 9.1e-21 73.9 1.4 1.5e-20 73.3 0.9 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|549455636|ref|YP_008604395.1| - 3.9e-10 40.1 0.0 3e-07 30.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|549455636|ref|YP_008604395.1| - 7.3e-07 28.6 0.3 4.2e-06 26.1 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|549455636|ref|YP_008604395.1| - 0.00015 20.9 0.1 0.00084 18.4 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|549455636|ref|YP_008604395.1| - 0.0011 18.4 0.3 0.0052 16.2 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|549455636|ref|YP_008604395.1| - 0.0015 18.0 0.0 0.0027 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|549455636|ref|YP_008604395.1| - 0.0024 18.0 1.5 1.5 8.9 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|549455636|ref|YP_008604395.1| - 0.028 14.3 0.4 0.096 12.6 0.1 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|549455636|ref|YP_008604395.1| - 0.035 13.5 0.2 0.2 11.0 0.1 1.9 1 1 1 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|549455636|ref|YP_008604395.1| - 0.071 13.4 0.5 1.8 8.8 0.2 2.2 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|549455636|ref|YP_008604395.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|549455636|ref|YP_008604395.1| - 0.16 10.4 0.2 0.87 7.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|549455637|ref|YP_008604396.1| - 1.1e-22 80.4 18.4 3.2e-22 78.9 11.3 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|549455638|ref|YP_008604397.1| - 4.6e-39 133.8 18.1 4.6e-39 133.8 12.5 2.2 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component FtsL PF04999.8 gi|549455638|ref|YP_008604397.1| - 0.023 14.4 1.2 0.46 10.2 0.2 2.6 2 0 0 2 2 2 0 Cell division protein FtsL Doppel PF11466.3 gi|549455638|ref|YP_008604397.1| - 0.039 13.5 1.5 0.039 13.5 1.0 2.5 3 0 0 3 3 3 0 Prion-like protein Doppel AAA_12 PF13087.1 gi|549455638|ref|YP_008604397.1| - 0.12 11.7 0.1 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Spore_YhaL PF14147.1 gi|549455638|ref|YP_008604397.1| - 1.8 8.0 5.7 24 4.4 1.5 2.7 2 0 0 2 2 2 0 Sporulation protein YhaL SBP_bac_5 PF00496.17 gi|549455639|ref|YP_008604398.1| - 2.9e-14 52.6 6.5 5.5e-10 38.6 0.0 3.2 3 2 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle Kelch_1 PF01344.20 gi|549455639|ref|YP_008604398.1| - 0.028 13.9 0.2 0.2 11.2 0.0 2.5 3 0 0 3 3 3 0 Kelch motif CBS PF00571.23 gi|549455640|ref|YP_008604399.1| - 9.1e-05 22.1 0.3 0.067 12.9 0.0 2.4 2 0 0 2 2 2 2 CBS domain Cupin_2 PF07883.6 gi|549455640|ref|YP_008604399.1| - 0.086 12.3 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Cupin domain PALP PF00291.20 gi|549455641|ref|YP_008604400.1| - 5.6e-47 160.4 0.0 7e-47 160.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Acylphosphatase PF00708.13 gi|549455642|ref|YP_008604401.1| - 5e-27 93.8 0.0 6e-27 93.5 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase tRNA-synt_1e PF01406.14 gi|549455643|ref|YP_008604402.1| - 1.6e-122 408.3 0.0 2e-122 408.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|549455643|ref|YP_008604402.1| - 2.3e-18 66.0 0.3 9.8e-11 40.9 0.1 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|549455643|ref|YP_008604402.1| - 1.2e-07 30.1 0.0 0.00033 18.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.16 gi|549455643|ref|YP_008604402.1| - 0.0005 18.8 0.1 0.016 13.8 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1f PF01921.13 gi|549455643|ref|YP_008604402.1| - 0.0026 16.5 0.1 0.23 10.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) DALR_2 PF09190.6 gi|549455643|ref|YP_008604402.1| - 0.0064 16.7 0.0 0.026 14.7 0.0 2.1 3 0 0 3 3 3 1 DALR domain ThiF PF00899.16 gi|549455644|ref|YP_008604403.1| - 1.3e-44 151.3 0.0 1.9e-44 150.7 0.0 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|549455644|ref|YP_008604403.1| - 3.6e-15 55.3 0.2 5.6e-15 54.7 0.1 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|549455644|ref|YP_008604403.1| - 0.00018 21.5 0.1 0.00041 20.4 0.1 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|549455644|ref|YP_008604403.1| - 0.00099 18.5 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|549455644|ref|YP_008604403.1| - 0.005 16.7 0.5 0.0087 15.9 0.3 1.4 1 0 0 1 1 1 1 short chain dehydrogenase CoA_transf_3 PF02515.12 gi|549455644|ref|YP_008604403.1| - 0.011 15.0 0.9 0.017 14.3 0.0 1.8 2 0 0 2 2 2 0 CoA-transferase family III KR PF08659.5 gi|549455644|ref|YP_008604403.1| - 0.026 14.2 0.2 0.046 13.3 0.1 1.5 1 0 0 1 1 1 0 KR domain 2-Hacid_dh_C PF02826.14 gi|549455644|ref|YP_008604403.1| - 0.039 13.1 0.2 0.086 11.9 0.1 1.6 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|549455644|ref|YP_008604403.1| - 0.045 13.1 0.1 0.066 12.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|549455644|ref|YP_008604403.1| - 0.19 10.7 0.6 0.27 10.2 0.4 1.2 1 0 0 1 1 1 0 FAD binding domain AdoMet_Synthase PF01941.14 gi|549455646|ref|YP_008604405.1| - 7.6e-174 577.8 3.2 8.7e-174 577.6 2.2 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) MCPsignal PF00015.16 gi|549455646|ref|YP_008604405.1| - 0.014 14.9 0.4 0.025 14.1 0.3 1.3 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain S-AdoMet_synt_N PF00438.15 gi|549455646|ref|YP_008604405.1| - 0.095 12.9 0.5 2.6 8.2 0.0 3.0 3 0 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain DUF460 PF04312.8 gi|549455647|ref|YP_008604406.1| - 3.3e-44 149.7 0.0 1e-43 148.2 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF460) GAS PF13851.1 gi|549455647|ref|YP_008604406.1| - 5.2e-05 22.5 6.8 6.9e-05 22.1 3.8 1.8 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding EzrA PF06160.7 gi|549455647|ref|YP_008604406.1| - 6.7e-05 21.2 1.1 6.7e-05 21.2 0.8 1.4 2 0 0 2 2 2 1 Septation ring formation regulator, EzrA DivIC PF04977.10 gi|549455647|ref|YP_008604406.1| - 0.00024 20.5 11.5 0.00035 20.0 4.0 2.5 1 1 1 2 2 2 1 Septum formation initiator Tropomyosin_1 PF12718.2 gi|549455647|ref|YP_008604406.1| - 0.00029 20.6 8.3 0.00029 20.6 5.7 1.8 2 0 0 2 2 2 1 Tropomyosin like WEMBL PF05701.6 gi|549455647|ref|YP_008604406.1| - 0.00049 18.6 7.1 0.00049 18.6 4.9 1.5 2 0 0 2 2 2 1 Weak chloroplast movement under blue light IncA PF04156.9 gi|549455647|ref|YP_008604406.1| - 0.00088 18.9 7.7 0.0017 17.9 5.3 1.4 1 0 0 1 1 1 1 IncA protein ALIX_LYPXL_bnd PF13949.1 gi|549455647|ref|YP_008604406.1| - 0.00096 18.1 6.8 0.00096 18.1 4.7 1.7 3 0 0 3 3 1 1 ALIX V-shaped domain binding to HIV Mur_ligase PF01225.20 gi|549455647|ref|YP_008604406.1| - 0.0012 18.8 0.0 0.0042 17.1 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, catalytic domain FlaC_arch PF05377.6 gi|549455647|ref|YP_008604406.1| - 0.0019 18.0 4.3 0.36 10.7 0.1 3.1 3 0 0 3 3 2 1 Flagella accessory protein C (FlaC) Atg14 PF10186.4 gi|549455647|ref|YP_008604406.1| - 0.0022 16.9 12.6 0.012 14.5 1.8 2.1 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 DUF4201 PF13870.1 gi|549455647|ref|YP_008604406.1| - 0.003 17.0 3.1 0.003 17.0 2.2 1.6 2 0 0 2 2 1 1 Domain of unknown function (DUF4201) Cortex-I_coil PF09304.5 gi|549455647|ref|YP_008604406.1| - 0.0041 17.1 15.3 0.16 12.0 2.3 3.1 2 1 1 3 3 3 2 Cortexillin I, coiled coil Rootletin PF15035.1 gi|549455647|ref|YP_008604406.1| - 0.0041 17.1 8.0 0.0097 15.9 5.5 1.6 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion APG6 PF04111.7 gi|549455647|ref|YP_008604406.1| - 0.011 14.7 3.6 0.018 14.1 2.5 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 V_ATPase_I PF01496.14 gi|549455647|ref|YP_008604406.1| - 0.011 13.6 3.1 0.017 12.9 2.1 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Laminin_I PF06008.9 gi|549455647|ref|YP_008604406.1| - 0.013 14.8 5.4 0.022 14.0 3.7 1.3 1 0 0 1 1 1 0 Laminin Domain I Filament PF00038.16 gi|549455647|ref|YP_008604406.1| - 0.018 14.5 11.5 0.024 14.1 7.1 1.7 1 1 0 1 1 1 0 Intermediate filament protein Reo_sigmaC PF04582.7 gi|549455647|ref|YP_008604406.1| - 0.023 13.9 2.2 0.21 10.7 0.2 2.5 1 1 1 3 3 3 0 Reovirus sigma C capsid protein TMF_TATA_bd PF12325.3 gi|549455647|ref|YP_008604406.1| - 0.023 14.3 10.3 0.057 13.1 7.1 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Spc7 PF08317.6 gi|549455647|ref|YP_008604406.1| - 0.028 13.0 2.3 0.051 12.2 1.6 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein TBPIP PF07106.8 gi|549455647|ref|YP_008604406.1| - 0.031 13.8 3.1 0.06 12.9 1.6 1.9 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Herpes_UL6 PF01763.11 gi|549455647|ref|YP_008604406.1| - 0.032 12.4 2.0 0.05 11.7 1.4 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like HemX PF04375.9 gi|549455647|ref|YP_008604406.1| - 0.033 12.7 2.2 0.053 12.1 1.5 1.3 1 0 0 1 1 1 0 HemX DUF2353 PF09789.4 gi|549455647|ref|YP_008604406.1| - 0.034 13.3 5.5 0.05 12.8 3.8 1.2 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Tnp_P_element PF12017.3 gi|549455647|ref|YP_008604406.1| - 0.046 12.9 3.5 0.041 13.0 0.9 1.8 1 1 1 2 2 2 0 Transposase protein Sec2p PF06428.6 gi|549455647|ref|YP_008604406.1| - 0.049 13.4 8.4 0.2 11.4 1.0 2.5 1 1 0 2 2 2 0 GDP/GTP exchange factor Sec2p DUF342 PF03961.8 gi|549455647|ref|YP_008604406.1| - 0.051 11.9 1.5 0.078 11.3 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) HOOK PF05622.7 gi|549455647|ref|YP_008604406.1| - 0.11 10.2 11.4 0.18 9.5 7.9 1.3 1 1 0 1 1 1 0 HOOK protein AAA_13 PF13166.1 gi|549455647|ref|YP_008604406.1| - 0.13 10.7 0.6 0.18 10.2 0.4 1.2 1 0 0 1 1 1 0 AAA domain FUSC PF04632.7 gi|549455647|ref|YP_008604406.1| - 0.13 10.6 5.7 0.27 9.6 4.0 1.5 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF972 PF06156.8 gi|549455647|ref|YP_008604406.1| - 0.15 12.4 6.4 1.5 9.2 0.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DUF4200 PF13863.1 gi|549455647|ref|YP_008604406.1| - 0.18 11.7 11.0 0.41 10.5 7.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) IFT57 PF10498.4 gi|549455647|ref|YP_008604406.1| - 0.23 10.1 2.4 0.37 9.4 1.7 1.4 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Fib_alpha PF08702.5 gi|549455647|ref|YP_008604406.1| - 0.26 11.3 0.3 0.56 10.3 0.2 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.4 gi|549455647|ref|YP_008604406.1| - 0.29 11.3 1.4 17 5.5 0.1 2.5 2 1 1 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Med9 PF07544.8 gi|549455647|ref|YP_008604406.1| - 0.29 10.8 8.6 0.72 9.6 5.5 2.0 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 CCDC155 PF14662.1 gi|549455647|ref|YP_008604406.1| - 0.32 10.5 11.4 0.75 9.3 7.9 1.6 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 Mnd1 PF03962.10 gi|549455647|ref|YP_008604406.1| - 0.34 10.5 4.8 0.72 9.4 3.3 1.4 1 0 0 1 1 1 0 Mnd1 family DivIVA PF05103.8 gi|549455647|ref|YP_008604406.1| - 0.37 10.8 5.4 0.89 9.6 3.7 1.5 1 0 0 1 1 1 0 DivIVA protein Matrilin_ccoil PF10393.4 gi|549455647|ref|YP_008604406.1| - 0.45 9.9 3.2 0.91 8.9 0.6 2.6 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin ADIP PF11559.3 gi|549455647|ref|YP_008604406.1| - 0.47 10.3 10.7 13 5.7 0.7 2.4 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF3166 PF11365.3 gi|549455647|ref|YP_008604406.1| - 0.66 10.4 8.7 1.6 9.2 5.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3166) TPR_MLP1_2 PF07926.7 gi|549455647|ref|YP_008604406.1| - 0.74 9.5 6.6 0.85 9.3 3.5 1.9 2 0 0 2 2 1 0 TPR/MLP1/MLP2-like protein SlyX PF04102.7 gi|549455647|ref|YP_008604406.1| - 0.81 10.1 8.3 3.2 8.2 0.7 3.2 3 0 0 3 3 2 0 SlyX ATG16 PF08614.6 gi|549455647|ref|YP_008604406.1| - 0.82 9.4 12.3 4.9 6.9 8.5 2.2 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF1515 PF07439.6 gi|549455647|ref|YP_008604406.1| - 0.92 9.3 9.7 0.49 10.2 4.2 2.6 2 1 0 2 2 1 0 Protein of unknown function (DUF1515) DUF641 PF04859.7 gi|549455647|ref|YP_008604406.1| - 1.4 8.6 9.3 0.17 11.6 0.5 2.8 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) OmpH PF03938.9 gi|549455647|ref|YP_008604406.1| - 1.8 8.4 4.5 2.9 7.8 2.5 1.7 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Occludin_ELL PF07303.8 gi|549455647|ref|YP_008604406.1| - 1.9 9.2 4.5 10 6.8 1.4 2.9 3 0 0 3 3 3 0 Occludin homology domain DUF1640 PF07798.6 gi|549455647|ref|YP_008604406.1| - 2 8.4 8.0 6.6 6.7 5.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) Laminin_II PF06009.7 gi|549455647|ref|YP_008604406.1| - 2 8.1 7.7 1.1 9.0 1.2 2.7 3 0 0 3 3 2 0 Laminin Domain II Cir_N PF10197.4 gi|549455647|ref|YP_008604406.1| - 2.7 8.0 5.7 0.49 10.4 1.1 1.9 2 0 0 2 2 1 0 N-terminal domain of CBF1 interacting co-repressor CIR TMF_DNA_bd PF12329.3 gi|549455647|ref|YP_008604406.1| - 3.4 7.5 11.5 3.4 7.5 1.6 2.7 3 0 0 3 3 2 0 TATA element modulatory factor 1 DNA binding Prefoldin PF02996.12 gi|549455647|ref|YP_008604406.1| - 3.6 7.2 9.0 5.3 6.7 0.5 3.2 2 1 1 3 3 3 0 Prefoldin subunit DUF2730 PF10805.3 gi|549455647|ref|YP_008604406.1| - 5.1 6.8 7.8 71 3.1 0.7 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF2730) Prefoldin_2 PF01920.15 gi|549455647|ref|YP_008604406.1| - 5.1 6.9 10.9 4.6 7.0 0.4 2.9 2 1 1 3 3 3 0 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|549455647|ref|YP_008604406.1| - 7.4 6.4 18.9 1.3 8.8 9.9 2.1 2 1 0 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 COG2 PF06148.6 gi|549455647|ref|YP_008604406.1| - 7.6 6.4 8.2 81 3.0 4.5 2.6 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 RIO1 PF01163.17 gi|549455648|ref|YP_008604407.1| - 1.5e-52 177.7 0.0 2e-52 177.3 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|549455648|ref|YP_008604407.1| - 5.5e-21 74.4 0.1 3.1e-20 72.0 0.0 2.1 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.18 gi|549455648|ref|YP_008604407.1| - 2.2e-09 37.4 5.6 0.0011 18.8 0.0 3.4 1 1 2 3 3 3 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|549455648|ref|YP_008604407.1| - 0.00012 21.2 0.0 0.0024 16.9 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|549455648|ref|YP_008604407.1| - 0.0039 16.3 0.0 0.0067 15.6 0.0 1.3 1 1 0 1 1 1 1 Protein kinase domain MarR_2 PF12802.2 gi|549455648|ref|YP_008604407.1| - 0.025 14.2 0.2 0.13 11.9 0.1 2.3 1 0 0 1 1 1 0 MarR family Fructosamin_kin PF03881.9 gi|549455648|ref|YP_008604407.1| - 0.054 12.4 0.0 0.078 11.9 0.0 1.2 1 0 0 1 1 1 0 Fructosamine kinase DUF1203 PF06718.6 gi|549455648|ref|YP_008604407.1| - 0.094 12.5 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1203) HTH_20 PF12840.2 gi|549455649|ref|YP_008604408.1| - 5.5e-11 42.1 0.0 8.3e-11 41.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|549455649|ref|YP_008604408.1| - 1.1e-10 40.9 0.4 2e-10 40.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|549455649|ref|YP_008604408.1| - 1.2e-06 27.7 0.4 2.2e-06 26.9 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|549455649|ref|YP_008604408.1| - 1.4e-05 24.6 0.1 1.8e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|549455649|ref|YP_008604408.1| - 4e-05 23.8 0.0 6.1e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|549455649|ref|YP_008604408.1| - 0.00011 21.8 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|549455649|ref|YP_008604408.1| - 0.00014 21.4 0.0 0.00025 20.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|549455649|ref|YP_008604408.1| - 0.00049 20.0 0.0 0.00071 19.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|549455649|ref|YP_008604408.1| - 0.0015 18.1 0.1 0.0034 16.9 0.1 1.6 1 0 0 1 1 1 1 HTH domain PqqD PF05402.7 gi|549455649|ref|YP_008604408.1| - 0.0035 17.3 0.0 0.008 16.1 0.0 1.8 1 1 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Fe_dep_repress PF01325.14 gi|549455649|ref|YP_008604408.1| - 0.0064 16.3 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain ArsR PF09824.4 gi|549455649|ref|YP_008604408.1| - 0.011 15.1 0.0 0.013 14.7 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_IclR PF09339.5 gi|549455649|ref|YP_008604408.1| - 0.015 14.8 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4 PF04545.11 gi|549455649|ref|YP_008604408.1| - 0.036 13.3 0.1 0.073 12.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 PAX PF00292.13 gi|549455649|ref|YP_008604408.1| - 0.063 12.9 0.1 0.073 12.7 0.0 1.2 1 0 0 1 1 1 0 'Paired box' domain HTH_Crp_2 PF13545.1 gi|549455649|ref|YP_008604408.1| - 0.088 12.6 0.1 0.27 11.0 0.1 1.8 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain CTP_synth_N PF06418.9 gi|549455650|ref|YP_008604409.1| - 5.6e-123 409.4 0.0 7.6e-123 408.9 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|549455650|ref|YP_008604409.1| - 3.6e-44 150.5 0.0 5.8e-44 149.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|549455650|ref|YP_008604409.1| - 1.8e-14 53.7 0.0 3e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|549455650|ref|YP_008604409.1| - 3.8e-08 32.9 0.0 6.1e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Luteo_PO PF04662.8 gi|549455650|ref|YP_008604409.1| - 0.065 12.6 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Luteovirus P0 protein TrbH PF07283.6 gi|549455650|ref|YP_008604409.1| - 0.07 12.9 0.1 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 Conjugal transfer protein TrbH Hydrolase_6 PF13344.1 gi|549455651|ref|YP_008604410.1| - 3.3e-23 81.5 0.0 4.6e-22 77.8 0.0 2.3 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|549455651|ref|YP_008604410.1| - 1.1e-09 37.8 0.0 2.4e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|549455651|ref|YP_008604410.1| - 3.2e-05 24.4 0.1 9.1e-05 22.9 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|549455651|ref|YP_008604410.1| - 0.00036 20.8 0.0 0.16 12.2 0.0 2.4 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|549455651|ref|YP_008604410.1| - 0.028 13.8 0.1 0.51 9.6 0.0 2.3 2 1 0 2 2 2 0 Mitochondrial PGP phosphatase FbpA PF05833.6 gi|549455655|ref|YP_008604414.1| - 4.4e-31 107.9 0.0 5.8e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|549455655|ref|YP_008604414.1| - 3e-25 87.9 0.0 5.6e-25 87.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF814) Cation_efflux PF01545.16 gi|549455657|ref|YP_008604416.1| - 1.4e-27 96.5 7.8 1.8e-27 96.1 5.4 1.0 1 0 0 1 1 1 1 Cation efflux family PhosphMutase PF10143.4 gi|549455658|ref|YP_008604417.1| - 5.9e-55 185.5 0.0 8e-55 185.1 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|549455658|ref|YP_008604417.1| - 7.2e-30 104.1 0.0 9.2e-30 103.8 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|549455658|ref|YP_008604417.1| - 0.012 14.9 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Aconitase PF00330.15 gi|549455661|ref|YP_008604420.1| - 1.3e-143 478.9 0.0 1.5e-143 478.6 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|549455661|ref|YP_008604420.1| - 3.3e-37 127.5 0.0 5.1e-37 126.9 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain NTS_2 PF15448.1 gi|549455661|ref|YP_008604420.1| - 0.062 13.6 0.0 0.29 11.4 0.0 2.2 2 0 0 2 2 2 0 N-terminal segments of P. falciparum erythrocyte membrane protein DAO PF01266.19 gi|549455662|ref|YP_008604421.1| - 1.5e-09 37.2 4.2 0.00022 20.2 0.0 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|549455662|ref|YP_008604421.1| - 2e-08 33.5 0.0 1.5e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|549455662|ref|YP_008604421.1| - 4e-07 29.9 1.8 4e-06 26.7 0.3 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|549455662|ref|YP_008604421.1| - 8.1e-07 29.1 0.1 1.9e-06 27.8 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|549455662|ref|YP_008604421.1| - 8.8e-07 29.2 0.3 0.00096 19.5 0.2 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|549455662|ref|YP_008604421.1| - 4.6e-06 25.9 5.1 0.035 13.1 1.8 3.3 2 1 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|549455662|ref|YP_008604421.1| - 0.00011 22.3 0.6 0.00064 19.8 0.4 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|549455662|ref|YP_008604421.1| - 0.00022 19.8 0.1 0.02 13.3 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.19 gi|549455662|ref|YP_008604421.1| - 0.00052 19.2 1.2 0.48 9.4 0.2 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|549455662|ref|YP_008604421.1| - 0.0075 15.1 0.1 0.0096 14.8 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|549455662|ref|YP_008604421.1| - 0.01 14.7 0.2 0.019 13.8 0.2 1.4 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.9 gi|549455662|ref|YP_008604421.1| - 0.016 13.8 0.1 1.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|549455662|ref|YP_008604421.1| - 0.02 14.6 0.6 0.29 10.9 0.1 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.12 gi|549455662|ref|YP_008604421.1| - 0.11 11.6 0.1 0.21 10.6 0.1 1.5 2 0 0 2 2 2 0 Thi4 family COX1 PF00115.15 gi|549455663|ref|YP_008604422.1| - 6.5e-100 334.8 51.2 6.5e-100 334.8 35.5 1.4 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I XhlA PF10779.4 gi|549455663|ref|YP_008604422.1| - 1.3 8.9 5.0 2.7 7.9 0.1 2.7 2 0 0 2 2 2 0 Haemolysin XhlA DUF4117 PF13491.1 gi|549455664|ref|YP_008604423.1| - 0.072 12.5 7.2 0.092 12.1 5.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4117) DUF2231 PF09990.4 gi|549455664|ref|YP_008604423.1| - 0.27 11.5 4.7 0.6 10.4 3.3 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2231) Ammonium_transp PF00909.16 gi|549455664|ref|YP_008604423.1| - 0.74 8.2 6.8 0.95 7.8 4.7 1.1 1 0 0 1 1 1 0 Ammonium Transporter Family DUF4064 PF13273.1 gi|549455664|ref|YP_008604423.1| - 3.5 7.7 15.1 1.5e+02 2.5 10.5 2.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) SdpI PF13630.1 gi|549455664|ref|YP_008604423.1| - 4.1 7.1 10.3 2.7 7.7 2.4 2.4 2 1 0 2 2 2 0 SdpI/YhfL protein family DUF1122 PF06557.6 gi|549455665|ref|YP_008604424.1| - 3.8e-63 211.6 0.0 4.3e-63 211.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) SUI1 PF01253.17 gi|549455666|ref|YP_008604425.1| - 1.6e-24 85.5 0.9 1.8e-24 85.2 0.6 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|549455666|ref|YP_008604425.1| - 0.015 15.4 0.3 0.024 14.8 0.1 1.3 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) zf-CSL PF05207.8 gi|549455667|ref|YP_008604426.1| - 0.0017 17.7 2.2 0.0041 16.6 1.5 1.5 1 1 0 1 1 1 1 CSL zinc finger DNA_RNApol_7kD PF03604.8 gi|549455667|ref|YP_008604426.1| - 0.0028 17.0 3.8 0.039 13.4 2.6 2.1 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|549455667|ref|YP_008604426.1| - 0.0091 15.5 1.5 0.034 13.7 0.7 2.1 1 1 1 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|549455667|ref|YP_008604426.1| - 0.012 15.2 1.9 0.055 13.1 0.9 2.2 1 1 1 2 2 2 0 zinc-ribbon domain C1_3 PF07649.7 gi|549455667|ref|YP_008604426.1| - 0.018 15.0 0.7 3.7 7.6 0.0 2.2 2 0 0 2 2 2 0 C1-like domain A2L_zn_ribbon PF08792.5 gi|549455667|ref|YP_008604426.1| - 0.038 13.4 1.6 1.9 8.0 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF3268 PF11672.3 gi|549455667|ref|YP_008604426.1| - 0.053 13.5 0.4 5.9 7.0 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) TFIIS_C PF01096.13 gi|549455667|ref|YP_008604426.1| - 0.06 12.9 0.5 1.8 8.2 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) C1_2 PF03107.11 gi|549455667|ref|YP_008604426.1| - 0.09 12.9 0.3 3.4 7.8 0.0 2.1 2 0 0 2 2 2 0 C1 domain RRN7 PF11781.3 gi|549455667|ref|YP_008604426.1| - 0.11 12.0 4.2 3.5 7.2 1.0 2.4 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-NADH-PPase PF09297.6 gi|549455667|ref|YP_008604426.1| - 0.12 11.9 1.0 1.7 8.2 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF4428 PF14471.1 gi|549455667|ref|YP_008604426.1| - 0.17 11.6 1.0 0.5 10.1 0.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) Ribosomal_S27e PF01667.12 gi|549455667|ref|YP_008604426.1| - 0.18 11.3 3.7 0.59 9.7 2.4 1.8 1 1 1 2 2 2 0 Ribosomal protein S27 SBP_bac_1 PF01547.20 gi|549455668|ref|YP_008604427.1| - 9.1e-39 134.0 2.0 1.4e-38 133.4 1.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|549455668|ref|YP_008604427.1| - 3e-36 125.6 0.0 4.6e-36 124.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|549455668|ref|YP_008604427.1| - 5.6e-09 35.9 0.0 5.5e-08 32.7 0.0 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|549455668|ref|YP_008604427.1| - 7.7e-08 31.9 0.1 8.8e-07 28.4 0.1 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|549455669|ref|YP_008604428.1| - 2.1e-05 24.1 16.6 2.1e-05 24.1 11.5 2.7 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|549455670|ref|YP_008604429.1| - 5.5e-14 52.1 23.1 5.5e-14 52.1 16.0 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|549455671|ref|YP_008604430.1| - 2e-32 112.3 0.0 2.9e-32 111.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|549455671|ref|YP_008604430.1| - 8.8e-10 38.4 0.5 8.8e-10 38.4 0.3 2.2 3 0 0 3 3 2 1 TOBE domain TOBE PF03459.12 gi|549455671|ref|YP_008604430.1| - 3.9e-09 36.4 2.3 8.1e-07 29.0 0.2 3.6 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.1 gi|549455671|ref|YP_008604430.1| - 5.9e-06 26.4 0.0 0.037 13.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|549455671|ref|YP_008604430.1| - 0.0004 20.4 0.1 0.0009 19.2 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|549455671|ref|YP_008604430.1| - 0.00043 20.4 0.1 0.039 14.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|549455671|ref|YP_008604430.1| - 0.0014 18.8 0.0 0.021 15.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|549455671|ref|YP_008604430.1| - 0.0063 16.4 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|549455671|ref|YP_008604430.1| - 0.0078 14.9 0.0 0.012 14.3 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|549455671|ref|YP_008604430.1| - 0.0085 15.8 0.4 0.024 14.3 0.1 1.9 1 1 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|549455671|ref|YP_008604430.1| - 0.014 15.3 0.0 0.047 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|549455671|ref|YP_008604430.1| - 0.02 14.1 0.2 0.3 10.2 0.0 2.1 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|549455671|ref|YP_008604430.1| - 0.027 14.1 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_29 PF13555.1 gi|549455671|ref|YP_008604430.1| - 0.039 13.4 0.0 0.077 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|549455671|ref|YP_008604430.1| - 0.042 13.0 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|549455671|ref|YP_008604430.1| - 0.11 12.1 0.0 0.29 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|549455671|ref|YP_008604430.1| - 0.14 11.9 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|549455671|ref|YP_008604430.1| - 0.17 12.7 0.4 0.92 10.3 0.1 2.1 1 1 0 2 2 2 0 AAA domain Arginase PF00491.16 gi|549455672|ref|YP_008604431.1| - 2.3e-74 250.1 0.0 2.8e-74 249.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family IPPT PF01715.12 gi|549455672|ref|YP_008604431.1| - 0.12 11.3 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 IPP transferase tRNA-synt_2b PF00587.20 gi|549455673|ref|YP_008604432.1| - 4.8e-52 176.0 0.0 6.7e-52 175.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|549455673|ref|YP_008604432.1| - 9.4e-26 89.6 0.2 1.9e-25 88.6 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain DNA_pol3_chi PF04364.8 gi|549455673|ref|YP_008604432.1| - 0.088 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III chi subunit, HolC Molydop_binding PF01568.16 gi|549455674|ref|YP_008604433.1| - 1.1e-06 28.4 0.1 0.0066 16.2 0.0 2.2 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain tRNA_int_endo PF01974.12 gi|549455676|ref|YP_008604435.1| - 1.5e-26 91.9 0.0 2.3e-26 91.3 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|549455676|ref|YP_008604435.1| - 6.1e-18 64.1 0.0 8.6e-18 63.6 0.0 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|549455676|ref|YP_008604435.1| - 0.15 11.5 0.1 0.31 10.5 0.0 1.6 1 1 0 1 1 1 0 tRNA-splicing endonuclease subunit sen54 N-term Flavoprotein PF02441.14 gi|549455677|ref|YP_008604436.1| - 3.6e-22 78.4 0.0 4.9e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein Macro PF01661.16 gi|549455678|ref|YP_008604437.1| - 4e-24 84.7 0.0 5.4e-24 84.3 0.0 1.2 1 0 0 1 1 1 1 Macro domain TetR_N PF00440.18 gi|549455678|ref|YP_008604437.1| - 0.11 12.1 0.7 0.88 9.2 0.1 2.2 1 1 1 2 2 2 0 Bacterial regulatory proteins, tetR family MobB PF03205.9 gi|549455679|ref|YP_008604438.1| - 6.1e-05 22.7 0.0 0.00025 20.7 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ETF PF01012.16 gi|549455679|ref|YP_008604438.1| - 0.026 14.2 1.2 2.3 7.9 0.0 3.0 3 0 0 3 3 3 0 Electron transfer flavoprotein domain AAA_10 PF12846.2 gi|549455679|ref|YP_008604438.1| - 0.079 12.3 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain PduV-EutP PF10662.4 gi|549455679|ref|YP_008604438.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Radical_SAM PF04055.16 gi|549455680|ref|YP_008604439.1| - 3e-24 86.0 0.0 5.7e-24 85.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|549455680|ref|YP_008604439.1| - 5.8e-07 29.5 0.0 1e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|549455680|ref|YP_008604439.1| - 7e-07 29.4 0.0 1.1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|549455680|ref|YP_008604439.1| - 4.4e-06 26.9 0.0 9e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain EndIII_4Fe-2S PF10576.4 gi|549455680|ref|YP_008604439.1| - 0.019 15.1 0.9 0.051 13.7 0.6 1.8 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Radical_SAM PF04055.16 gi|549455681|ref|YP_008604440.1| - 5.6e-18 65.6 0.1 2e-17 63.8 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|549455681|ref|YP_008604440.1| - 1.4e-05 25.0 0.0 2.6e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|549455681|ref|YP_008604440.1| - 6.3e-05 23.1 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Aldolase_II PF00596.16 gi|549455682|ref|YP_008604441.1| - 5.7e-40 136.8 0.9 6.6e-40 136.6 0.7 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Aldo_ket_red PF00248.16 gi|549455683|ref|YP_008604442.1| - 1.1e-55 188.4 0.0 1.3e-55 188.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family CoA_binding_2 PF13380.1 gi|549455684|ref|YP_008604443.1| - 4.6e-35 120.2 0.3 5.4e-35 120.0 0.2 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|549455684|ref|YP_008604443.1| - 5.2e-08 33.2 0.0 1e-07 32.3 0.0 1.5 1 1 1 2 2 2 1 CoA binding domain PAS_8 PF13188.1 gi|549455684|ref|YP_008604443.1| - 0.066 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 PAS domain PTH2 PF01981.11 gi|549455685|ref|YP_008604444.1| - 5.1e-43 145.4 0.0 5.7e-43 145.3 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF2396 PF09654.5 gi|549455685|ref|YP_008604444.1| - 0.016 15.2 0.1 0.019 14.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) PyrI PF01948.13 gi|549455686|ref|YP_008604445.1| - 4.4e-29 100.3 0.0 6.1e-29 99.9 0.0 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|549455686|ref|YP_008604445.1| - 2.3e-16 58.9 0.3 3.3e-16 58.4 0.2 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF3125 PF11323.3 gi|549455686|ref|YP_008604445.1| - 0.02 14.6 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3125) Foamy_virus_ENV PF03408.9 gi|549455686|ref|YP_008604445.1| - 0.048 11.2 0.0 0.075 10.5 0.0 1.2 1 0 0 1 1 1 0 Foamy virus envelope protein OTCace_N PF02729.16 gi|549455687|ref|YP_008604446.1| - 6.2e-42 142.6 0.0 8.7e-42 142.1 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|549455687|ref|YP_008604446.1| - 1.6e-31 109.3 0.0 2.3e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Ub-Mut7C PF14451.1 gi|549455687|ref|YP_008604446.1| - 0.062 12.8 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Mut7-C ubiquitin HD PF01966.17 gi|549455688|ref|YP_008604447.1| - 5.3e-09 36.1 0.0 1.1e-08 35.1 0.0 1.6 1 1 1 2 2 2 1 HD domain CutA1 PF03091.10 gi|549455689|ref|YP_008604448.1| - 6.5e-40 134.9 0.2 7.2e-40 134.7 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Pyr_redox_2 PF07992.9 gi|549455690|ref|YP_008604449.1| - 4.1e-34 118.2 13.1 2.7e-33 115.5 8.2 4.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|549455690|ref|YP_008604449.1| - 5e-32 110.2 0.2 9.2e-32 109.3 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|549455690|ref|YP_008604449.1| - 1.3e-24 86.4 2.3 7.2e-22 77.5 0.1 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|549455690|ref|YP_008604449.1| - 9.2e-11 41.2 1.3 1.1e-05 24.4 0.4 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|549455690|ref|YP_008604449.1| - 1.6e-10 40.6 7.4 3.5e-09 36.2 0.9 2.8 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|549455690|ref|YP_008604449.1| - 3.8e-10 40.1 1.0 1.6e-07 31.5 0.1 2.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|549455690|ref|YP_008604449.1| - 6.3e-08 31.8 12.8 4e-05 22.6 0.4 3.6 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|549455690|ref|YP_008604449.1| - 3.7e-07 29.3 4.0 1.4e-05 24.1 0.3 2.6 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|549455690|ref|YP_008604449.1| - 3.8e-06 26.8 4.9 0.0025 17.7 0.3 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|549455690|ref|YP_008604449.1| - 4.9e-06 25.2 10.5 0.0018 16.8 0.3 3.4 3 1 1 4 4 4 2 HI0933-like protein UDPG_MGDP_dh_N PF03721.9 gi|549455690|ref|YP_008604449.1| - 2.8e-05 23.5 2.4 0.00016 21.1 0.0 2.6 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|549455690|ref|YP_008604449.1| - 9.1e-05 22.1 1.6 0.0063 16.1 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|549455690|ref|YP_008604449.1| - 0.0013 17.8 7.7 0.16 10.9 0.8 3.1 2 1 1 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.1 gi|549455690|ref|YP_008604449.1| - 0.0015 18.7 0.2 0.37 11.0 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Thi4 PF01946.12 gi|549455690|ref|YP_008604449.1| - 0.002 17.2 2.4 0.011 14.8 0.1 2.6 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|549455690|ref|YP_008604449.1| - 0.0028 17.2 0.0 0.0079 15.7 0.0 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|549455690|ref|YP_008604449.1| - 0.0033 16.3 5.5 0.074 11.9 0.1 3.0 2 1 1 3 3 3 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|549455690|ref|YP_008604449.1| - 0.023 13.3 1.5 0.5 8.9 0.1 2.2 2 0 0 2 2 2 0 Tryptophan halogenase XdhC_C PF13478.1 gi|549455690|ref|YP_008604449.1| - 0.06 13.6 0.0 0.78 10.0 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain 2-oxoacid_dh PF00198.18 gi|549455691|ref|YP_008604450.1| - 2.6e-83 278.8 0.0 3.2e-83 278.5 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|549455691|ref|YP_008604450.1| - 1.3e-19 69.5 0.7 2.5e-19 68.6 0.5 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|549455691|ref|YP_008604450.1| - 1.7e-14 53.1 4.3 4.5e-14 51.7 0.9 3.0 3 0 0 3 3 3 1 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|549455691|ref|YP_008604450.1| - 1.4e-09 37.4 2.6 1.8e-06 27.4 0.1 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|549455691|ref|YP_008604450.1| - 1.3e-05 24.7 2.7 0.0011 18.3 0.4 2.2 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|549455691|ref|YP_008604450.1| - 0.00096 19.4 0.5 0.027 14.7 0.0 2.6 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_2 PF12700.2 gi|549455691|ref|YP_008604450.1| - 0.021 13.9 0.8 1.9 7.5 0.0 2.7 2 1 1 3 3 3 0 HlyD family secretion protein Transket_pyr PF02779.19 gi|549455692|ref|YP_008604451.1| - 3.8e-51 173.0 0.0 6e-51 172.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|549455692|ref|YP_008604451.1| - 3.4e-40 136.8 0.1 1.8e-38 131.2 0.0 2.4 3 0 0 3 3 3 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|549455693|ref|YP_008604452.1| - 5.9e-83 278.0 0.0 7.1e-83 277.7 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|549455693|ref|YP_008604452.1| - 0.0041 16.0 0.0 0.011 14.6 0.0 1.6 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|549455693|ref|YP_008604452.1| - 0.031 13.8 0.5 0.53 9.8 0.4 2.4 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.16 gi|549455693|ref|YP_008604452.1| - 0.078 11.7 0.0 0.13 11.0 0.0 1.4 1 1 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain Acyl-CoA_dh_1 PF00441.19 gi|549455694|ref|YP_008604453.1| - 7.2e-45 152.7 0.4 1e-44 152.2 0.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|549455694|ref|YP_008604453.1| - 1.9e-30 105.7 0.3 8.2e-30 103.6 0.0 2.2 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|549455694|ref|YP_008604453.1| - 3.2e-18 64.9 0.1 6.2e-18 64.0 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|549455694|ref|YP_008604453.1| - 5.9e-15 55.6 0.0 1.2e-14 54.6 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|549455694|ref|YP_008604453.1| - 0.049 13.0 0.0 0.52 9.6 0.0 2.4 2 1 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal ArgK PF03308.11 gi|549455695|ref|YP_008604454.1| - 3e-114 380.3 2.4 3.7e-114 380.0 1.7 1.1 1 0 0 1 1 1 1 ArgK protein CbiA PF01656.18 gi|549455695|ref|YP_008604454.1| - 1.7e-08 34.1 0.0 2.8e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|549455695|ref|YP_008604454.1| - 3.9e-08 32.9 0.8 1.7e-07 30.8 0.6 1.9 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|549455695|ref|YP_008604454.1| - 2e-05 24.3 0.1 6.2e-05 22.7 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|549455695|ref|YP_008604454.1| - 4.8e-05 22.9 0.2 0.00027 20.4 0.1 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|549455695|ref|YP_008604454.1| - 6.7e-05 22.4 0.2 0.0002 20.8 0.1 1.8 1 1 0 1 1 1 1 AAA-like domain ATP_bind_1 PF03029.12 gi|549455695|ref|YP_008604454.1| - 7.5e-05 22.3 0.0 0.00017 21.2 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|549455695|ref|YP_008604454.1| - 0.00032 20.4 0.1 0.00072 19.3 0.0 1.6 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|549455695|ref|YP_008604454.1| - 0.0006 19.8 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|549455695|ref|YP_008604454.1| - 0.00085 18.9 0.1 0.0015 18.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|549455695|ref|YP_008604454.1| - 0.0018 17.7 0.0 0.14 11.5 0.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain NB-ARC PF00931.17 gi|549455695|ref|YP_008604454.1| - 0.0076 15.1 0.0 0.012 14.4 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_17 PF13207.1 gi|549455695|ref|YP_008604454.1| - 0.014 16.1 0.9 0.028 15.2 0.1 1.9 2 1 0 2 2 1 0 AAA domain MipZ PF09140.6 gi|549455695|ref|YP_008604454.1| - 0.015 14.4 0.0 0.026 13.6 0.0 1.5 1 1 0 1 1 1 0 ATPase MipZ AAA_19 PF13245.1 gi|549455695|ref|YP_008604454.1| - 0.015 15.0 0.3 0.067 12.9 0.2 2.1 1 0 0 1 1 1 0 Part of AAA domain Glyco_trans_4_4 PF13579.1 gi|549455695|ref|YP_008604454.1| - 0.017 15.2 0.0 0.048 13.8 0.0 2.0 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain APS_kinase PF01583.15 gi|549455695|ref|YP_008604454.1| - 0.02 14.5 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.1 gi|549455695|ref|YP_008604454.1| - 0.028 14.3 0.0 0.063 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_31 PF13614.1 gi|549455695|ref|YP_008604454.1| - 0.028 14.3 0.1 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|549455695|ref|YP_008604454.1| - 0.038 13.1 0.0 0.067 12.2 0.0 1.4 1 0 0 1 1 1 0 KaiC ABC_tran PF00005.22 gi|549455695|ref|YP_008604454.1| - 0.043 14.0 0.0 0.079 13.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter TrwB_AAD_bind PF10412.4 gi|549455695|ref|YP_008604454.1| - 0.062 11.9 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KTI12 PF08433.5 gi|549455695|ref|YP_008604454.1| - 0.073 12.2 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.18 gi|549455695|ref|YP_008604454.1| - 0.074 13.0 0.2 0.15 11.9 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|549455695|ref|YP_008604454.1| - 0.088 13.1 0.8 0.16 12.2 0.1 1.9 2 0 0 2 2 1 0 AAA domain PIF1 PF05970.9 gi|549455695|ref|YP_008604454.1| - 0.14 11.0 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase B12-binding PF02310.14 gi|549455696|ref|YP_008604455.1| - 4.5e-20 71.7 0.7 6.4e-20 71.2 0.5 1.3 1 1 0 1 1 1 1 B12 binding domain TPP_enzyme_N PF02776.13 gi|549455696|ref|YP_008604455.1| - 0.077 12.4 0.1 3.4 7.1 0.0 2.5 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IU_nuc_hydro PF01156.14 gi|549455696|ref|YP_008604455.1| - 0.12 11.5 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase MM_CoA_mutase PF01642.17 gi|549455697|ref|YP_008604456.1| - 7.3e-188 624.8 0.0 8.4e-188 624.6 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Peripla_BP_2 PF01497.13 gi|549455698|ref|YP_008604457.1| - 2.5e-23 82.4 0.0 3.3e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein SAA PF00277.13 gi|549455699|ref|YP_008604458.1| - 0.13 12.6 0.1 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 Serum amyloid A protein DUF309 PF03745.9 gi|549455700|ref|YP_008604459.1| - 6.6e-13 47.9 3.1 8.2e-13 47.5 1.3 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF309) Zip PF02535.17 gi|549455701|ref|YP_008604460.1| - 2.2e-22 79.5 27.0 1.3e-18 67.1 8.2 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter Pyrophosphatase PF00719.14 gi|549455702|ref|YP_008604461.1| - 2.2e-60 202.6 0.1 2.5e-60 202.4 0.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase COX15-CtaA PF02628.10 gi|549455704|ref|YP_008604463.1| - 1.1e-25 90.1 13.0 1.4e-25 89.8 9.0 1.0 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein DUF998 PF06197.8 gi|549455704|ref|YP_008604463.1| - 0.012 14.9 11.7 0.019 14.3 8.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF1516 PF07457.6 gi|549455704|ref|YP_008604463.1| - 0.12 12.4 3.6 0.2 11.7 2.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1516) SirB PF04247.7 gi|549455704|ref|YP_008604463.1| - 4.3 7.0 11.9 0.26 11.0 3.2 2.2 2 1 1 3 3 3 0 Invasion gene expression up-regulator, SirB DUF2628 PF10947.3 gi|549455704|ref|YP_008604463.1| - 8.2 6.2 12.7 0.35 10.6 2.3 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2628) GCV_T PF01571.16 gi|549455705|ref|YP_008604464.1| - 6.1e-51 172.7 0.0 8.8e-51 172.2 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|549455705|ref|YP_008604464.1| - 2.5e-21 75.5 0.3 1.3e-20 73.2 0.1 2.0 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|549455705|ref|YP_008604464.1| - 0.0099 15.7 0.0 0.022 14.6 0.0 1.6 1 1 0 1 1 1 1 Sarcosine oxidase, gamma subunit family 3-alpha PF03475.9 gi|549455706|ref|YP_008604465.1| - 0.023 14.4 0.1 0.047 13.4 0.1 1.5 1 0 0 1 1 1 0 3-alpha domain Transketolase_C PF02780.15 gi|549455706|ref|YP_008604465.1| - 0.14 12.1 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Transketolase, C-terminal domain DUF2299 PF10061.4 gi|549455708|ref|YP_008604467.1| - 5.2e-39 132.8 0.0 6e-39 132.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) ABC_tran PF00005.22 gi|549455710|ref|YP_008604469.1| - 3.4e-23 82.4 0.0 4.4e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455710|ref|YP_008604469.1| - 4.9e-12 46.4 0.1 7.6e-11 42.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|549455710|ref|YP_008604469.1| - 2.8e-07 30.0 0.1 0.016 14.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|549455710|ref|YP_008604469.1| - 0.00078 18.9 0.0 0.16 11.4 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain MutS_V PF00488.16 gi|549455710|ref|YP_008604469.1| - 0.0059 16.0 0.0 2.6 7.3 0.0 2.3 2 0 0 2 2 2 2 MutS domain V AAA_29 PF13555.1 gi|549455710|ref|YP_008604469.1| - 0.0059 16.0 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|549455710|ref|YP_008604469.1| - 0.015 13.7 0.0 2.1 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|549455710|ref|YP_008604469.1| - 0.051 13.8 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|549455710|ref|YP_008604469.1| - 0.08 12.8 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|549455710|ref|YP_008604469.1| - 0.17 11.0 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0051 PF01458.12 gi|549455711|ref|YP_008604470.1| - 1.9e-61 207.4 0.1 2.4e-61 207.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|549455712|ref|YP_008604471.1| - 1.6e-38 132.4 0.0 1.9e-38 132.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF4398 PF14346.1 gi|549455713|ref|YP_008604472.1| - 9.8e-08 31.9 128.0 0.00011 22.1 23.9 8.7 4 2 4 8 8 8 5 Domain of unknown function (DUF4398) EzrA PF06160.7 gi|549455713|ref|YP_008604472.1| - 5.5e-06 24.8 61.3 2e-05 23.0 16.8 4.6 2 1 3 5 5 5 3 Septation ring formation regulator, EzrA Laminin_II PF06009.7 gi|549455713|ref|YP_008604472.1| - 0.0096 15.6 54.1 0.011 15.4 4.7 6.2 3 1 2 6 6 6 3 Laminin Domain II B5 PF03484.10 gi|549455713|ref|YP_008604472.1| - 0.04 13.7 0.3 11 5.9 0.0 3.5 2 0 0 2 2 2 0 tRNA synthetase B5 domain YfdX PF10938.3 gi|549455713|ref|YP_008604472.1| - 0.098 12.3 72.3 0.14 11.7 0.7 8.1 4 1 2 6 6 6 0 YfdX protein SSP160 PF06933.6 gi|549455713|ref|YP_008604472.1| - 0.18 9.7 5.7 0.34 8.8 3.9 1.3 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DASH_Dad3 PF08656.5 gi|549455713|ref|YP_008604472.1| - 0.3 10.8 15.6 0.54 9.9 0.7 4.6 3 1 1 4 4 4 0 DASH complex subunit Dad3 Laminin_I PF06008.9 gi|549455713|ref|YP_008604472.1| - 0.41 9.9 76.4 0.34 10.2 13.0 5.4 2 1 2 4 4 4 0 Laminin Domain I DUF3439 PF11921.3 gi|549455713|ref|YP_008604472.1| - 2.2 8.0 6.1 4.7 6.9 4.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) DUF2935 PF11155.3 gi|549455713|ref|YP_008604472.1| - 2.7 8.0 19.5 15 5.7 3.3 5.2 3 2 1 4 4 4 0 Domain of unknown function (DUF2935) Apolipoprotein PF01442.13 gi|549455713|ref|YP_008604472.1| - 6.2 6.2 74.1 0.46 9.9 11.3 5.5 2 1 2 4 4 4 0 Apolipoprotein A1/A4/E domain HTH_24 PF13412.1 gi|549455714|ref|YP_008604473.1| - 3e-08 32.9 0.1 5.3e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|549455714|ref|YP_008604473.1| - 1.1e-05 24.9 0.1 2.1e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|549455714|ref|YP_008604473.1| - 0.00028 20.4 0.1 0.00063 19.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|549455714|ref|YP_008604473.1| - 0.00057 19.3 0.5 0.0018 17.7 0.3 1.9 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|549455714|ref|YP_008604473.1| - 0.0085 15.7 0.1 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_psq PF05225.11 gi|549455714|ref|YP_008604473.1| - 0.0096 15.4 0.1 0.019 14.4 0.1 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_20 PF12840.2 gi|549455714|ref|YP_008604473.1| - 0.011 15.4 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|549455714|ref|YP_008604473.1| - 0.051 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Citrate_synt PF00285.16 gi|549455715|ref|YP_008604474.1| - 4.1e-116 387.6 0.0 4.6e-116 387.4 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase ERp29 PF07749.7 gi|549455715|ref|YP_008604474.1| - 0.19 12.4 1.2 0.45 11.1 0.2 2.0 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain CitG PF01874.11 gi|549455716|ref|YP_008604475.1| - 1.4e-35 122.8 0.0 1.6e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Amidase PF01425.16 gi|549455718|ref|YP_008604477.1| - 9.5e-114 380.6 0.0 1.1e-113 380.4 0.0 1.0 1 0 0 1 1 1 1 Amidase DUF1370 PF07114.6 gi|549455718|ref|YP_008604477.1| - 0.049 12.8 0.0 0.082 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1370) GatB_N PF02934.10 gi|549455719|ref|YP_008604478.1| - 1e-100 336.3 0.0 1.3e-100 335.9 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|549455719|ref|YP_008604478.1| - 1.5e-26 92.9 0.0 2.2e-26 92.3 0.0 1.3 1 0 0 1 1 1 1 GatB domain DUF4366 PF14283.1 gi|549455720|ref|YP_008604479.1| - 0.0044 16.4 2.5 0.0057 16.1 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) Cytochrom_C PF00034.16 gi|549455720|ref|YP_008604479.1| - 0.02 15.6 0.1 0.044 14.6 0.0 1.6 2 0 0 2 2 2 0 Cytochrome c Rifin_STEVOR PF02009.11 gi|549455720|ref|YP_008604479.1| - 0.14 11.8 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Rifin/stevor family DUF347 PF03988.7 gi|549455720|ref|YP_008604479.1| - 0.43 10.5 4.1 1.1 9.1 0.4 2.2 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) OppC_N PF12911.2 gi|549455720|ref|YP_008604479.1| - 8.5 5.8 7.5 18 4.8 0.0 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C TMEM187 PF15100.1 gi|549455721|ref|YP_008604480.1| - 0.098 12.0 0.1 0.1 11.9 0.1 1.0 1 0 0 1 1 1 0 TMEM187 protein family RhodobacterPufX PF11511.3 gi|549455721|ref|YP_008604480.1| - 0.13 11.6 2.0 0.15 11.4 1.4 1.1 1 0 0 1 1 1 0 Intrinsic membrane protein PufX COX2 PF00116.15 gi|549455722|ref|YP_008604481.1| - 6.9e-24 83.9 0.0 1e-23 83.4 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain DUF1207 PF06727.6 gi|549455722|ref|YP_008604481.1| - 0.13 11.1 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1207) Adeno_E3_CR2 PF02439.10 gi|549455722|ref|YP_008604481.1| - 0.48 10.0 2.5 1.2 8.7 1.7 1.6 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 SCO1-SenC PF02630.9 gi|549455723|ref|YP_008604482.1| - 0.018 14.7 0.0 0.099 12.2 0.0 2.1 1 1 1 2 2 2 0 SCO1/SenC Thioredoxin PF00085.15 gi|549455724|ref|YP_008604483.1| - 8.9e-09 34.9 0.0 1.8e-08 33.9 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|549455724|ref|YP_008604483.1| - 8.7e-06 25.9 0.0 1.8e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain DsbD PF02683.10 gi|549455724|ref|YP_008604483.1| - 9.7e-06 25.3 23.4 0.00089 18.9 14.1 3.0 2 1 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|549455724|ref|YP_008604483.1| - 0.0038 16.9 0.0 0.0074 16.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.1 gi|549455724|ref|YP_008604483.1| - 0.063 13.4 0.0 2.2 8.4 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin-like TcpE PF12648.2 gi|549455724|ref|YP_008604483.1| - 0.88 9.7 4.6 25 5.0 1.5 2.7 2 0 0 2 2 2 0 TcpE family DUF461 PF04314.8 gi|549455725|ref|YP_008604484.1| - 1.3e-10 40.9 0.1 1.7e-10 40.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF461) DUF485 PF04341.7 gi|549455725|ref|YP_008604484.1| - 0.2 11.3 0.8 0.3 10.8 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 Methyltransf_3 PF01596.12 gi|549455726|ref|YP_008604485.1| - 1.2e-10 40.8 0.0 1.5e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|549455726|ref|YP_008604485.1| - 1.2e-08 35.6 0.0 1.6e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|549455726|ref|YP_008604485.1| - 1.2e-07 32.3 0.1 1.7e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|549455726|ref|YP_008604485.1| - 0.047 13.3 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|549455726|ref|YP_008604485.1| - 0.13 11.7 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Rieske PF00355.21 gi|549455727|ref|YP_008604486.1| - 1e-24 85.8 0.0 1.6e-24 85.2 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|549455727|ref|YP_008604486.1| - 0.012 15.5 0.2 0.024 14.6 0.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CytB6-F_Fe-S PF08802.5 gi|549455727|ref|YP_008604486.1| - 0.043 13.8 0.6 0.043 13.8 0.4 2.4 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit Form-deh_trans PF09163.6 gi|549455727|ref|YP_008604486.1| - 2.2 7.8 4.4 0.74 9.3 0.4 2.1 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane Cytochrom_B_N_2 PF13631.1 gi|549455728|ref|YP_008604487.1| - 5.9e-30 104.2 2.3 5.9e-30 104.2 1.6 3.2 3 1 1 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|549455728|ref|YP_008604487.1| - 0.01 16.0 3.8 0.01 16.0 2.6 3.1 4 0 0 4 4 4 0 Cytochrome b(C-terminal)/b6/petD VKOR PF07884.9 gi|549455729|ref|YP_008604488.1| - 2e-18 66.5 11.3 2.2e-18 66.4 7.8 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family SBP_bac_1 PF01547.20 gi|549455730|ref|YP_008604489.1| - 1.7e-27 96.9 4.6 5.3e-27 95.3 3.2 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|549455730|ref|YP_008604489.1| - 1e-24 87.2 0.1 1.5e-24 86.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|549455730|ref|YP_008604489.1| - 7.6e-20 71.7 0.2 1.4e-19 70.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|549455730|ref|YP_008604489.1| - 1.2e-12 47.9 0.4 3.3e-12 46.5 0.3 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|549455731|ref|YP_008604490.1| - 1.3e-20 73.7 32.4 3.7e-13 49.3 6.9 3.7 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|549455732|ref|YP_008604491.1| - 1e-33 116.5 0.0 2.2e-33 115.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|549455732|ref|YP_008604491.1| - 1.4e-13 50.7 4.0 7.3e-09 35.6 0.0 3.6 3 1 0 3 3 3 2 TOBE domain TOBE_2 PF08402.5 gi|549455732|ref|YP_008604491.1| - 3.5e-12 46.1 0.9 3.6e-11 42.8 0.0 2.8 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|549455732|ref|YP_008604491.1| - 3.1e-08 33.9 0.0 9.4e-05 22.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|549455732|ref|YP_008604491.1| - 0.00037 19.6 0.0 0.0027 16.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.10 gi|549455732|ref|YP_008604491.1| - 0.00076 18.2 0.0 0.0012 17.6 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein RNA_helicase PF00910.17 gi|549455732|ref|YP_008604491.1| - 0.0011 19.0 0.0 0.0034 17.5 0.0 1.8 2 0 0 2 2 2 1 RNA helicase AAA_16 PF13191.1 gi|549455732|ref|YP_008604491.1| - 0.0035 17.3 0.1 0.0097 15.9 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|549455732|ref|YP_008604491.1| - 0.0056 16.8 1.8 0.064 13.3 1.3 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|549455732|ref|YP_008604491.1| - 0.019 15.1 0.0 0.084 13.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|549455732|ref|YP_008604491.1| - 0.046 13.6 1.0 0.63 9.9 0.7 2.2 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|549455732|ref|YP_008604491.1| - 0.052 12.7 0.0 0.084 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|549455732|ref|YP_008604491.1| - 0.055 13.2 0.2 0.16 11.7 0.0 1.9 2 0 0 2 2 1 0 Part of AAA domain AAA_14 PF13173.1 gi|549455732|ref|YP_008604491.1| - 0.057 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|549455732|ref|YP_008604491.1| - 0.061 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_29 PF13555.1 gi|549455732|ref|YP_008604491.1| - 0.061 12.8 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|549455732|ref|YP_008604491.1| - 0.12 12.7 0.2 0.18 12.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|549455734|ref|YP_008604493.1| - 1.3e-66 223.7 0.0 1.8e-66 223.3 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|549455734|ref|YP_008604493.1| - 1.7e-30 105.3 1.0 4.4e-29 100.7 0.9 2.4 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|549455734|ref|YP_008604493.1| - 2.1e-13 50.1 0.1 7.2e-13 48.4 0.0 2.0 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|549455734|ref|YP_008604493.1| - 1.4e-07 31.1 0.1 5.6e-07 29.1 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|549455734|ref|YP_008604493.1| - 3e-06 27.1 0.0 6.3e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|549455734|ref|YP_008604493.1| - 3.8e-06 26.6 0.7 2.2e-05 24.1 0.1 2.1 1 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|549455734|ref|YP_008604493.1| - 5.7e-06 27.1 0.5 1.7e-05 25.6 0.0 2.1 3 0 0 3 3 1 1 AAA domain AAA_10 PF12846.2 gi|549455734|ref|YP_008604493.1| - 3.8e-05 23.2 0.0 7.2e-05 22.3 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|549455734|ref|YP_008604493.1| - 9.5e-05 22.5 0.0 0.00057 20.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|549455734|ref|YP_008604493.1| - 0.0012 18.5 0.6 0.004 16.7 0.1 2.1 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|549455734|ref|YP_008604493.1| - 0.0012 18.2 0.0 0.005 16.2 0.0 2.1 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|549455734|ref|YP_008604493.1| - 0.0019 17.3 0.9 0.0043 16.2 0.0 2.1 2 1 0 2 2 2 1 KaiC AAA_16 PF13191.1 gi|549455734|ref|YP_008604493.1| - 0.0021 18.0 0.0 0.009 16.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|549455734|ref|YP_008604493.1| - 0.0025 16.9 0.0 0.0051 15.9 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.15 gi|549455734|ref|YP_008604493.1| - 0.0063 16.1 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_18 PF13238.1 gi|549455734|ref|YP_008604493.1| - 0.0088 16.3 0.2 0.027 14.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|549455734|ref|YP_008604493.1| - 0.01 15.5 0.4 0.045 13.4 0.2 2.2 1 1 0 1 1 1 0 Part of AAA domain cobW PF02492.14 gi|549455734|ref|YP_008604493.1| - 0.011 15.1 0.1 0.032 13.6 0.0 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|549455734|ref|YP_008604493.1| - 0.011 14.5 0.1 0.032 13.0 0.0 1.7 2 0 0 2 2 2 0 ArgK protein AAA PF00004.24 gi|549455734|ref|YP_008604493.1| - 0.017 15.2 0.1 0.12 12.5 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|549455734|ref|YP_008604493.1| - 0.029 13.5 0.0 0.064 12.4 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_5 PF07728.9 gi|549455734|ref|YP_008604493.1| - 0.034 13.8 0.2 0.12 12.0 0.0 2.0 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) BRO1 PF03097.13 gi|549455734|ref|YP_008604493.1| - 0.057 12.1 0.0 1.9 7.1 0.0 2.1 2 0 0 2 2 2 0 BRO1-like domain AAA_31 PF13614.1 gi|549455734|ref|YP_008604493.1| - 0.084 12.8 0.0 1 9.2 0.0 2.5 2 1 1 3 3 2 0 AAA domain AAA_28 PF13521.1 gi|549455734|ref|YP_008604493.1| - 0.085 12.8 0.6 0.18 11.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain Thymidylate_kin PF02223.12 gi|549455734|ref|YP_008604493.1| - 0.092 12.1 0.6 0.28 10.5 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase LpxK PF02606.9 gi|549455734|ref|YP_008604493.1| - 0.12 11.3 0.2 0.27 10.1 0.1 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase IstB_IS21 PF01695.12 gi|549455734|ref|YP_008604493.1| - 0.12 11.7 0.3 0.81 9.0 0.0 2.4 3 0 0 3 3 2 0 IstB-like ATP binding protein DUF373 PF04123.8 gi|549455734|ref|YP_008604493.1| - 0.13 11.2 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Ribosomal_S13 PF00416.17 gi|549455735|ref|YP_008604494.1| - 6.4e-32 110.1 0.0 7.6e-32 109.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|549455735|ref|YP_008604494.1| - 0.032 12.7 0.0 0.037 12.5 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) HHH_4 PF14490.1 gi|549455735|ref|YP_008604494.1| - 0.098 12.4 0.0 0.25 11.1 0.0 1.7 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain S4 PF01479.20 gi|549455736|ref|YP_008604495.1| - 3.3e-15 55.2 0.1 7.6e-15 54.0 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|549455736|ref|YP_008604495.1| - 4.6e-05 23.7 2.7 4.8e-05 23.6 1.0 1.7 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|549455737|ref|YP_008604496.1| - 7.4e-43 145.2 0.5 8.7e-43 144.9 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 M20_dimer PF07687.9 gi|549455737|ref|YP_008604496.1| - 0.066 12.9 0.3 0.11 12.2 0.2 1.4 1 0 0 1 1 1 0 Peptidase dimerisation domain RNA_pol_A_bac PF01000.21 gi|549455738|ref|YP_008604497.1| - 6.8e-27 93.8 0.0 1.1e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|549455738|ref|YP_008604497.1| - 5.3e-12 44.6 0.0 6.7e-12 44.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18e PF00828.14 gi|549455739|ref|YP_008604498.1| - 6.6e-13 49.1 0.2 8.1e-13 48.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|549455740|ref|YP_008604499.1| - 1e-26 93.4 0.0 1.2e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|549455741|ref|YP_008604500.1| - 8.1e-34 116.4 0.1 9.6e-34 116.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|549455742|ref|YP_008604501.1| - 1.9e-25 88.6 0.0 2.2e-25 88.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|549455742|ref|YP_008604501.1| - 0.016 15.2 0.0 0.022 14.8 0.0 1.3 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S2 PF00318.15 gi|549455743|ref|YP_008604502.1| - 3.4e-34 117.9 0.0 4.5e-20 71.7 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 RNA_binding PF01877.12 gi|549455744|ref|YP_008604503.1| - 1.5e-27 95.9 0.0 1.8e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 RNA binding AAA_17 PF13207.1 gi|549455745|ref|YP_008604504.1| - 2.8e-12 47.5 0.1 3.2e-12 47.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|549455745|ref|YP_008604504.1| - 8.7e-11 42.2 0.0 1.3e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|549455745|ref|YP_008604504.1| - 3.4e-09 36.7 0.2 4.9e-09 36.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|549455745|ref|YP_008604504.1| - 1.9e-05 24.1 0.0 0.05 12.9 0.0 2.1 2 0 0 2 2 2 2 Dephospho-CoA kinase Zeta_toxin PF06414.7 gi|549455745|ref|YP_008604504.1| - 3.1e-05 23.1 0.0 4.2e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Zeta toxin Cytidylate_kin2 PF13189.1 gi|549455745|ref|YP_008604504.1| - 5.6e-05 23.1 0.8 0.17 11.7 0.0 2.3 1 1 0 2 2 2 2 Cytidylate kinase-like family AAA_19 PF13245.1 gi|549455745|ref|YP_008604504.1| - 0.00021 20.9 4.1 0.0034 17.1 2.8 2.8 1 1 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|549455745|ref|YP_008604504.1| - 0.00024 21.1 0.2 0.00026 21.0 0.2 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|549455745|ref|YP_008604504.1| - 0.0012 18.9 0.0 0.0025 17.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|549455745|ref|YP_008604504.1| - 0.0021 18.2 0.0 0.0028 17.8 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|549455745|ref|YP_008604504.1| - 0.0021 17.3 0.0 0.0031 16.7 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 APS_kinase PF01583.15 gi|549455745|ref|YP_008604504.1| - 0.0028 17.3 0.1 0.0053 16.4 0.0 1.5 1 1 0 1 1 1 1 Adenylylsulphate kinase ADK PF00406.17 gi|549455745|ref|YP_008604504.1| - 0.0074 16.1 0.0 0.011 15.6 0.0 1.4 1 1 0 1 1 1 1 Adenylate kinase RuvB_N PF05496.7 gi|549455745|ref|YP_008604504.1| - 0.0089 15.0 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|549455745|ref|YP_008604504.1| - 0.039 13.6 0.1 0.065 12.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|549455745|ref|YP_008604504.1| - 0.042 13.5 0.2 0.084 12.5 0.1 1.6 1 1 0 1 1 1 0 NTPase Radical_SAM PF04055.16 gi|549455745|ref|YP_008604504.1| - 0.052 13.7 0.1 0.15 12.2 0.1 1.7 1 1 0 1 1 1 0 Radical SAM superfamily ABC_tran PF00005.22 gi|549455745|ref|YP_008604504.1| - 0.054 13.7 0.0 0.063 13.5 0.0 1.3 1 1 0 1 1 1 0 ABC transporter DUF3596 PF12167.3 gi|549455745|ref|YP_008604504.1| - 0.066 12.7 0.2 0.14 11.6 0.0 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF3596) AAA_28 PF13521.1 gi|549455745|ref|YP_008604504.1| - 0.067 13.1 0.3 0.15 12.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|549455745|ref|YP_008604504.1| - 0.076 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain ArgK PF03308.11 gi|549455745|ref|YP_008604504.1| - 0.095 11.4 0.2 0.26 10.0 0.1 1.7 2 0 0 2 2 2 0 ArgK protein AAA_30 PF13604.1 gi|549455745|ref|YP_008604504.1| - 0.099 12.2 0.9 1.2 8.6 0.1 2.2 1 1 1 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|549455745|ref|YP_008604504.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Aminotran_5 PF00266.14 gi|549455746|ref|YP_008604505.1| - 7.4e-35 120.3 0.0 1.1e-34 119.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|549455746|ref|YP_008604505.1| - 3.4e-05 22.9 0.0 0.00015 20.8 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|549455746|ref|YP_008604505.1| - 9.5e-05 20.8 0.0 0.00015 20.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|549455746|ref|YP_008604505.1| - 0.058 12.4 0.1 0.13 11.2 0.1 1.5 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family DUF2934 PF11154.3 gi|549455746|ref|YP_008604505.1| - 0.16 11.3 0.7 0.29 10.5 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2934) tRNA-synt_1d PF00750.14 gi|549455747|ref|YP_008604506.1| - 3.2e-46 157.7 0.0 4.9e-28 97.9 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|549455747|ref|YP_008604506.1| - 3.5e-28 97.9 0.0 7.2e-28 96.9 0.0 1.6 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|549455747|ref|YP_008604506.1| - 8.1e-11 42.3 0.0 1.9e-10 41.1 0.0 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|549455747|ref|YP_008604506.1| - 0.011 14.3 0.0 1.3 7.5 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|549455747|ref|YP_008604506.1| - 0.1 11.2 0.0 0.74 8.3 0.0 2.3 3 0 0 3 3 3 0 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|549455747|ref|YP_008604506.1| - 0.32 8.9 0.1 0.93 7.4 0.0 1.8 3 0 0 3 3 3 0 tRNA synthetases class I (I, L, M and V) RtcB PF01139.12 gi|549455748|ref|YP_008604507.1| - 1.6e-151 505.0 0.0 1.8e-151 504.9 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.10 gi|549455748|ref|YP_008604507.1| - 0.1 12.4 0.0 0.29 10.9 0.0 1.8 2 0 0 2 2 2 0 Complex 1 protein (LYR family) CYTH PF01928.16 gi|549455749|ref|YP_008604508.1| - 7.2e-29 100.7 0.3 8.4e-29 100.5 0.2 1.1 1 0 0 1 1 1 1 CYTH domain DUF2118 PF09891.4 gi|549455750|ref|YP_008604509.1| - 2.6e-42 144.0 1.0 3e-42 143.8 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) polyprenyl_synt PF00348.12 gi|549455751|ref|YP_008604510.1| - 5e-63 212.3 0.1 6.6e-63 211.9 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase FMN_dh PF01070.13 gi|549455752|ref|YP_008604511.1| - 8.9e-17 60.9 0.1 8.9e-12 44.5 0.1 2.2 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|549455752|ref|YP_008604511.1| - 0.00023 20.1 2.1 0.0004 19.4 1.0 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|549455752|ref|YP_008604511.1| - 0.0051 15.7 0.2 0.0091 14.9 0.2 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase Amidohydro_2 PF04909.9 gi|549455752|ref|YP_008604511.1| - 0.016 14.7 0.3 0.027 14.0 0.2 1.3 1 0 0 1 1 1 0 Amidohydrolase DeoC PF01791.4 gi|549455752|ref|YP_008604511.1| - 0.02 14.2 3.7 0.052 12.8 2.6 1.7 1 1 0 1 1 1 0 DeoC/LacD family aldolase AA_kinase PF00696.23 gi|549455753|ref|YP_008604512.1| - 1.1e-25 90.5 0.8 2.4e-25 89.5 0.6 1.5 1 1 0 1 1 1 1 Amino acid kinase family ETF PF01012.16 gi|549455753|ref|YP_008604512.1| - 0.97 9.1 5.3 4.1 7.1 0.0 2.8 3 0 0 3 3 3 0 Electron transfer flavoprotein domain Memo PF01875.12 gi|549455755|ref|YP_008604514.1| - 4.1e-71 239.0 0.0 4.6e-71 238.9 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein MatE PF01554.13 gi|549455756|ref|YP_008604515.1| - 1.1e-47 161.6 28.2 9.3e-27 93.6 4.8 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|549455756|ref|YP_008604515.1| - 3e-08 33.5 7.1 3e-08 33.5 4.9 4.8 2 2 4 6 6 6 2 Polysaccharide biosynthesis C-terminal domain YjbE PF11106.3 gi|549455756|ref|YP_008604515.1| - 0.075 12.9 3.0 0.3 11.0 2.1 2.1 1 0 0 1 1 1 0 Exopolysaccharide production protein YjbE Peptidase_M32 PF02074.10 gi|549455757|ref|YP_008604516.1| - 2.9e-185 616.6 0.1 3.4e-185 616.3 0.1 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase HTH_IclR PF09339.5 gi|549455758|ref|YP_008604517.1| - 0.0049 16.4 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF3028 PF11229.3 gi|549455758|ref|YP_008604517.1| - 0.0087 14.3 0.4 0.063 11.5 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3028) ASCH PF04266.9 gi|549455759|ref|YP_008604518.1| - 0.013 15.9 0.1 0.016 15.5 0.0 1.4 1 1 0 1 1 1 0 ASCH domain FTP PF07504.8 gi|549455759|ref|YP_008604518.1| - 0.24 10.8 0.0 0.24 10.8 0.0 1.5 2 0 0 2 2 2 0 Fungalysin/Thermolysin Propeptide Motif SIR2 PF02146.12 gi|549455760|ref|YP_008604519.1| - 4.8e-55 186.0 0.0 6e-55 185.7 0.0 1.1 1 0 0 1 1 1 1 Sir2 family DZR PF12773.2 gi|549455760|ref|YP_008604519.1| - 0.026 14.3 0.2 0.048 13.4 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|549455760|ref|YP_008604519.1| - 0.035 14.0 0.3 0.071 13.0 0.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|549455760|ref|YP_008604519.1| - 0.055 12.7 0.7 5.9 6.2 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|549455760|ref|YP_008604519.1| - 0.16 11.2 1.1 2.8 7.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|549455760|ref|YP_008604519.1| - 0.8 9.2 3.2 6.2 6.4 2.4 2.0 1 1 1 2 2 2 0 zinc-ribbon domain HemN_C PF06969.11 gi|549455762|ref|YP_008604521.1| - 0.0025 17.8 0.1 0.014 15.4 0.0 2.1 2 1 0 2 2 2 1 HemN C-terminal domain LexA_DNA_bind PF01726.11 gi|549455762|ref|YP_008604521.1| - 0.024 14.1 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_45 PF14947.1 gi|549455762|ref|YP_008604521.1| - 0.094 12.5 0.1 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix CTP_transf_3 PF02348.14 gi|549455762|ref|YP_008604521.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Aldedh PF00171.17 gi|549455763|ref|YP_008604522.1| - 8.2e-120 400.2 0.0 9.4e-120 400.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|549455763|ref|YP_008604522.1| - 7.9e-07 28.1 0.0 2.7e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF1487 PF07368.6 gi|549455763|ref|YP_008604522.1| - 0.073 12.2 0.0 8.6 5.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) tRNA_NucTransf2 PF09249.6 gi|549455766|ref|YP_008604525.1| - 1.8e-40 137.3 0.0 2.5e-40 136.8 0.0 1.2 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|549455766|ref|YP_008604525.1| - 8e-16 58.1 0.0 1.3e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain LigT_PEase PF02834.11 gi|549455767|ref|YP_008604526.1| - 1.8e-33 114.3 0.1 1.5e-16 60.1 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|549455767|ref|YP_008604526.1| - 5.4e-14 52.1 0.0 7e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|549455767|ref|YP_008604526.1| - 1.7e-12 47.4 0.0 5.7e-12 45.7 0.0 1.6 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|549455767|ref|YP_008604526.1| - 0.004 16.2 0.0 0.014 14.4 0.0 1.7 1 1 1 2 2 2 1 Uncharacterised conserved protein Topoisom_bac PF01131.15 gi|549455768|ref|YP_008604527.1| - 8.8e-95 317.8 0.0 1.1e-94 317.6 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|549455768|ref|YP_008604527.1| - 0.00062 19.6 0.0 0.0034 17.3 0.0 2.2 1 1 0 1 1 1 1 Toprim domain CbiC PF02570.10 gi|549455768|ref|YP_008604527.1| - 0.022 14.1 0.1 0.61 9.4 0.0 2.2 2 0 0 2 2 2 0 Precorrin-8X methylmutase Peptidase_S24 PF00717.18 gi|549455769|ref|YP_008604528.1| - 2.3e-08 33.5 1.4 3.4e-08 33.0 0.5 1.7 2 0 0 2 2 2 1 Peptidase S24-like B3_4 PF03483.12 gi|549455770|ref|YP_008604529.1| - 1.6e-29 102.5 0.0 4.5e-29 101.1 0.0 1.6 2 0 0 2 2 2 1 B3/4 domain Inositol_P PF00459.20 gi|549455771|ref|YP_008604530.1| - 4.2e-34 118.0 0.2 5.2e-34 117.7 0.1 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|549455771|ref|YP_008604530.1| - 0.008 15.0 0.2 0.014 14.2 0.1 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase AsnC_trans_reg PF01037.16 gi|549455773|ref|YP_008604532.1| - 8.8e-11 41.3 0.2 1.1e-10 41.0 0.1 1.1 1 0 0 1 1 1 1 AsnC family RHH_1 PF01402.16 gi|549455773|ref|YP_008604532.1| - 0.012 15.4 0.1 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family ACT_4 PF13291.1 gi|549455773|ref|YP_008604532.1| - 0.014 15.7 0.1 0.024 14.9 0.0 1.5 1 1 0 1 1 1 0 ACT domain GYD PF08734.6 gi|549455773|ref|YP_008604532.1| - 0.047 13.4 0.0 0.051 13.3 0.0 1.1 1 0 0 1 1 1 0 GYD domain NapD PF03927.8 gi|549455773|ref|YP_008604532.1| - 0.067 13.0 0.1 0.091 12.6 0.0 1.3 1 1 0 1 1 1 0 NapD protein Spt5-NGN PF03439.8 gi|549455773|ref|YP_008604532.1| - 0.076 12.7 0.0 0.23 11.2 0.0 1.7 1 1 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section PP_M1 PF03012.9 gi|549455773|ref|YP_008604532.1| - 0.1 11.9 0.0 6.6 5.9 0.0 2.0 2 0 0 2 2 2 0 Phosphoprotein eRF1_3 PF03465.10 gi|549455774|ref|YP_008604533.1| - 4e-24 85.0 0.0 8.7e-24 83.9 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|549455774|ref|YP_008604533.1| - 2.8e-20 73.0 0.2 5.4e-20 72.0 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_1 PF03463.10 gi|549455774|ref|YP_008604533.1| - 1.8e-18 66.3 0.0 3.8e-18 65.3 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 DUF4350 PF14258.1 gi|549455774|ref|YP_008604533.1| - 0.079 13.1 0.4 0.34 11.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) tRNA-synt_1 PF00133.17 gi|549455775|ref|YP_008604534.1| - 4.3e-115 385.0 0.0 2.5e-114 382.5 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|549455775|ref|YP_008604534.1| - 7.7e-25 87.4 0.6 1.4e-24 86.5 0.4 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|549455775|ref|YP_008604534.1| - 7.7e-25 87.3 0.0 3.2e-13 49.1 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|549455775|ref|YP_008604534.1| - 0.0026 17.0 0.0 0.12 11.6 0.0 2.3 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 DZR PF12773.2 gi|549455775|ref|YP_008604534.1| - 0.0064 16.2 1.3 0.94 9.3 0.1 3.2 3 0 0 3 3 3 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|549455775|ref|YP_008604534.1| - 0.0096 15.1 0.7 0.0096 15.1 0.5 2.7 3 0 0 3 3 3 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|549455775|ref|YP_008604534.1| - 0.023 14.1 0.7 0.023 14.1 0.5 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|549455775|ref|YP_008604534.1| - 0.07 12.6 6.9 1.6 8.2 0.2 3.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain CDC37_C PF08564.5 gi|549455775|ref|YP_008604534.1| - 0.091 12.6 0.0 0.72 9.7 0.0 2.2 2 0 0 2 2 2 0 Cdc37 C terminal domain zf-IS66 PF13005.2 gi|549455775|ref|YP_008604534.1| - 0.17 11.9 2.9 57 3.7 0.1 3.6 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 tRNA-synt_1d PF00750.14 gi|549455775|ref|YP_008604534.1| - 0.29 9.9 0.0 0.52 9.0 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) zf-TFIIB PF13453.1 gi|549455775|ref|YP_008604534.1| - 4.4 6.5 7.5 29 3.9 0.1 3.5 3 1 1 4 4 4 0 Transcription factor zinc-finger DUF457 PF04307.9 gi|549455777|ref|YP_008604536.1| - 1.9e-20 72.8 5.3 2.3e-20 72.5 3.7 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Ldr_toxin PF13940.1 gi|549455777|ref|YP_008604536.1| - 0.085 12.6 1.2 0.21 11.3 0.0 2.2 2 0 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system ABC_ATPase PF09818.4 gi|549455778|ref|YP_008604537.1| - 4.6e-142 473.7 0.0 5.7e-142 473.4 0.0 1.0 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|549455778|ref|YP_008604537.1| - 0.013 15.8 0.0 0.019 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|549455778|ref|YP_008604537.1| - 0.037 12.9 0.0 0.063 12.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_25 PF13481.1 gi|549455778|ref|YP_008604537.1| - 0.038 13.4 0.0 0.089 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|549455778|ref|YP_008604537.1| - 0.12 12.1 0.1 0.12 12.1 0.1 2.4 3 0 0 3 3 3 0 Part of AAA domain DUF457 PF04307.9 gi|549455779|ref|YP_008604538.1| - 8.9e-05 21.8 9.1 0.00031 20.1 6.3 1.8 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF1286 PF06939.6 gi|549455779|ref|YP_008604538.1| - 0.0016 18.6 0.1 0.0025 17.9 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1286) VIT1 PF01988.14 gi|549455780|ref|YP_008604539.1| - 4.8e-17 62.1 34.6 2.1e-09 37.1 7.7 3.0 1 1 2 3 3 3 2 VIT family Rubrerythrin PF02915.12 gi|549455780|ref|YP_008604539.1| - 1.3e-05 25.5 6.5 0.0017 18.7 1.0 2.2 2 0 0 2 2 2 2 Rubrerythrin COQ7 PF03232.8 gi|549455780|ref|YP_008604539.1| - 0.0047 16.4 0.0 1.8 8.0 0.0 2.4 2 1 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 Ferritin_2 PF13668.1 gi|549455780|ref|YP_008604539.1| - 0.023 14.6 0.1 0.39 10.6 0.1 2.6 1 1 0 1 1 1 0 Ferritin-like domain TcdA_TcdB_pore PF12920.2 gi|549455780|ref|YP_008604539.1| - 3.5 5.4 7.1 5.4 4.8 4.9 1.2 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain Lyase_1 PF00206.15 gi|549455781|ref|YP_008604540.1| - 8.1e-86 288.0 0.0 1.1e-85 287.6 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|549455781|ref|YP_008604540.1| - 1.9e-10 40.6 2.4 5.6e-10 39.1 0.1 2.9 3 0 0 3 3 3 1 Fumarase C C-terminus HTH_23 PF13384.1 gi|549455781|ref|YP_008604540.1| - 0.097 12.3 0.0 1.1 9.0 0.0 2.6 2 0 0 2 2 2 0 Homeodomain-like domain DUF2286 PF10051.4 gi|549455782|ref|YP_008604541.1| - 8.4e-44 148.6 0.5 9.4e-44 148.4 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Ribosomal_L7Ae PF01248.21 gi|549455783|ref|YP_008604542.1| - 1.5e-32 110.9 0.2 1.8e-32 110.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|549455783|ref|YP_008604542.1| - 0.0025 17.5 0.2 0.0038 16.9 0.1 1.4 1 1 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.6 gi|549455783|ref|YP_008604542.1| - 0.053 13.3 0.0 0.055 13.3 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 TruD PF01142.13 gi|549455784|ref|YP_008604543.1| - 9.8e-42 142.9 0.0 1.7e-40 138.8 0.0 1.9 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DAO PF01266.19 gi|549455785|ref|YP_008604544.1| - 9.2e-12 44.5 0.8 1e-06 27.9 0.6 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|549455785|ref|YP_008604544.1| - 7.9e-09 35.0 2.1 5.8e-08 32.2 1.6 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|549455785|ref|YP_008604544.1| - 1.4e-07 31.4 1.4 1.4e-07 31.4 1.0 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|549455785|ref|YP_008604544.1| - 1e-06 27.9 2.3 1.3e-05 24.2 2.5 1.9 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|549455785|ref|YP_008604544.1| - 0.0001 21.2 1.6 0.00019 20.3 1.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|549455785|ref|YP_008604544.1| - 0.00018 21.4 0.3 0.0003 20.7 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|549455785|ref|YP_008604544.1| - 0.00035 19.7 0.8 0.0011 18.1 0.3 1.8 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|549455785|ref|YP_008604544.1| - 0.00036 20.8 1.4 0.00069 19.9 0.5 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|549455785|ref|YP_008604544.1| - 0.00044 18.8 0.9 0.00075 18.0 0.6 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|549455785|ref|YP_008604544.1| - 0.00044 19.4 1.1 0.00066 18.8 0.8 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|549455785|ref|YP_008604544.1| - 0.0014 18.7 0.7 0.0075 16.3 0.4 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|549455785|ref|YP_008604544.1| - 0.0029 16.7 2.9 0.0036 16.4 1.3 1.6 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase ESX-1_EspG PF14011.1 gi|549455785|ref|YP_008604544.1| - 0.036 13.3 0.4 0.06 12.5 0.3 1.2 1 0 0 1 1 1 0 EspG family UDPG_MGDP_dh_N PF03721.9 gi|549455785|ref|YP_008604544.1| - 0.22 10.8 0.2 0.44 9.8 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|549455785|ref|YP_008604544.1| - 0.31 9.8 1.6 0.45 9.3 1.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|549455785|ref|YP_008604544.1| - 0.41 9.2 0.9 0.63 8.5 0.6 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Alba PF01918.16 gi|549455786|ref|YP_008604545.1| - 1.1e-14 53.7 0.4 1.5e-14 53.3 0.3 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|549455786|ref|YP_008604545.1| - 0.015 14.9 2.9 1.1 8.8 2.0 2.1 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Ribosomal_L31e PF01198.14 gi|549455786|ref|YP_008604545.1| - 0.058 13.0 0.4 0.092 12.4 0.3 1.4 1 0 0 1 1 1 0 Ribosomal protein L31e DUF1827 PF08860.5 gi|549455786|ref|YP_008604545.1| - 0.15 12.1 0.7 0.22 11.6 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1827) DUF763 PF05559.6 gi|549455787|ref|YP_008604546.1| - 1.8e-106 355.6 0.0 2.3e-106 355.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH_5 PF14520.1 gi|549455787|ref|YP_008604546.1| - 0.61 10.3 2.6 1 9.6 0.1 2.7 3 1 0 3 3 3 0 Helix-hairpin-helix domain NAD_kinase PF01513.16 gi|549455788|ref|YP_008604547.1| - 6.6e-45 153.0 0.0 7.3e-45 152.9 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|549455788|ref|YP_008604547.1| - 2.8e-05 23.5 0.9 0.00022 20.6 0.0 2.5 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain ABC2_membrane PF01061.19 gi|549455789|ref|YP_008604548.1| - 7.4e-10 38.3 21.7 7.4e-10 38.3 15.1 1.7 2 0 0 2 2 2 1 ABC-2 type transporter MNSV_P7B PF06692.6 gi|549455789|ref|YP_008604548.1| - 0.12 12.1 1.3 0.4 10.4 0.0 2.3 2 0 0 2 2 2 0 Melon necrotic spot virus P7B protein ABC2_membrane_3 PF12698.2 gi|549455789|ref|YP_008604548.1| - 1.6 7.6 29.8 0.079 11.9 16.0 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|549455790|ref|YP_008604549.1| - 4.6e-09 35.7 19.5 4.6e-09 35.7 13.5 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|549455790|ref|YP_008604549.1| - 1.8 7.5 28.7 0.84 8.6 16.9 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|549455791|ref|YP_008604550.1| - 9.5e-27 93.9 0.0 1.6e-26 93.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455791|ref|YP_008604550.1| - 8.4e-18 65.3 0.0 4.6e-13 49.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|549455791|ref|YP_008604550.1| - 0.0005 19.2 0.0 0.0061 15.6 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|549455791|ref|YP_008604550.1| - 0.0056 16.1 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.17 gi|549455791|ref|YP_008604550.1| - 0.0064 15.9 0.0 0.0098 15.3 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|549455791|ref|YP_008604550.1| - 0.0091 16.0 0.0 0.042 13.8 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.1 gi|549455791|ref|YP_008604550.1| - 0.015 13.7 0.0 0.71 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|549455791|ref|YP_008604550.1| - 0.051 13.7 0.0 0.17 12.0 0.0 1.9 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|549455791|ref|YP_008604550.1| - 0.091 12.9 0.0 0.32 11.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|549455791|ref|YP_008604550.1| - 0.092 12.1 0.0 4.8 6.5 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|549455791|ref|YP_008604550.1| - 0.1 12.8 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|549455791|ref|YP_008604550.1| - 0.12 13.2 0.1 0.34 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|549455791|ref|YP_008604550.1| - 0.13 12.2 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|549455791|ref|YP_008604550.1| - 0.14 11.7 0.0 0.31 10.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|549455791|ref|YP_008604550.1| - 0.14 11.8 0.5 0.41 10.4 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain 2-Hacid_dh_C PF02826.14 gi|549455792|ref|YP_008604551.1| - 1.1e-68 229.8 0.0 1.5e-68 229.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|549455792|ref|YP_008604551.1| - 2.9e-39 133.6 0.0 3.3e-39 133.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|549455792|ref|YP_008604551.1| - 0.00013 21.8 0.0 0.00037 20.3 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|549455792|ref|YP_008604551.1| - 0.0099 15.2 0.0 0.028 13.7 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|549455792|ref|YP_008604551.1| - 0.023 14.5 0.0 0.063 13.1 0.0 1.7 2 1 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Peptidase_S9 PF00326.16 gi|549455793|ref|YP_008604552.1| - 1.9e-52 177.6 0.0 2.8e-52 177.0 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|549455793|ref|YP_008604552.1| - 4e-12 46.1 0.0 6.6e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|549455793|ref|YP_008604552.1| - 1.5e-06 27.8 0.0 0.0012 18.3 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|549455793|ref|YP_008604552.1| - 2e-05 23.2 0.0 0.00038 19.0 0.0 2.3 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.2 gi|549455793|ref|YP_008604552.1| - 0.00019 21.3 0.0 0.0072 16.2 0.0 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|549455793|ref|YP_008604552.1| - 0.014 14.7 0.0 0.066 12.4 0.0 1.9 1 1 0 1 1 1 0 Dienelactone hydrolase family BAAT_C PF08840.6 gi|549455793|ref|YP_008604552.1| - 0.017 14.8 0.0 0.4 10.3 0.0 2.2 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase_phd PF10503.4 gi|549455793|ref|YP_008604552.1| - 0.14 11.4 0.0 0.28 10.4 0.0 1.4 1 0 0 1 1 1 0 Esterase PHB depolymerase PD40 PF07676.7 gi|549455793|ref|YP_008604552.1| - 0.65 9.7 5.2 4.2 7.1 0.0 4.4 5 0 0 5 5 5 0 WD40-like Beta Propeller Repeat Alba PF01918.16 gi|549455794|ref|YP_008604553.1| - 1.7e-15 56.3 0.3 2.4e-15 55.8 0.2 1.2 1 0 0 1 1 1 1 Alba HTH_41 PF14502.1 gi|549455794|ref|YP_008604553.1| - 0.11 12.1 0.1 0.29 10.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Pribosyltran_N PF13793.1 gi|549455795|ref|YP_008604554.1| - 2.2e-19 69.3 0.0 5.7e-19 67.9 0.0 1.6 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|549455795|ref|YP_008604554.1| - 3.4e-12 46.1 1.0 5.4e-12 45.5 0.3 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|549455795|ref|YP_008604554.1| - 1.2e-08 34.9 0.3 2.8e-08 33.7 0.1 1.6 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|549455795|ref|YP_008604554.1| - 0.0015 17.7 0.0 0.0025 17.0 0.0 1.6 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase KR PF08659.5 gi|549455795|ref|YP_008604554.1| - 0.098 12.3 0.1 12 5.4 0.1 2.6 3 0 0 3 3 3 0 KR domain UPF0020 PF01170.13 gi|549455796|ref|YP_008604555.1| - 1.8e-44 151.4 0.0 2.3e-44 151.1 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|549455796|ref|YP_008604555.1| - 1e-10 41.6 0.0 1.7e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|549455796|ref|YP_008604555.1| - 0.00062 19.2 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|549455796|ref|YP_008604555.1| - 0.0025 17.2 0.0 0.0037 16.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain N6_N4_Mtase PF01555.13 gi|549455796|ref|YP_008604555.1| - 0.12 11.8 0.0 6.2 6.2 0.0 2.1 2 0 0 2 2 2 0 DNA methylase Lactamase_B_2 PF12706.2 gi|549455797|ref|YP_008604556.1| - 5e-22 78.3 0.0 7.1e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|549455797|ref|YP_008604556.1| - 6.5e-11 42.2 0.7 1.7e-09 37.6 0.5 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|549455797|ref|YP_008604556.1| - 0.012 15.3 0.0 0.053 13.2 0.0 1.9 2 0 0 2 2 2 0 Beta-lactamase superfamily domain CBS PF00571.23 gi|549455798|ref|YP_008604557.1| - 9.3e-31 105.3 3.4 1.9e-16 59.5 0.2 2.1 2 0 0 2 2 2 2 CBS domain SchA_CurD PF04486.7 gi|549455798|ref|YP_008604557.1| - 0.0046 16.7 0.6 0.0092 15.8 0.3 1.6 1 1 0 1 1 1 1 SchA/CurD like domain Ribosomal_S10 PF00338.17 gi|549455800|ref|YP_008604559.1| - 3.2e-30 103.8 0.0 3.6e-30 103.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NETI PF14044.1 gi|549455800|ref|YP_008604559.1| - 0.076 12.5 0.1 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 NETI protein GTP_EFTU PF00009.22 gi|549455801|ref|YP_008604560.1| - 6.6e-59 198.5 0.0 8.8e-59 198.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|549455801|ref|YP_008604560.1| - 1.2e-28 99.1 0.2 3.6e-28 97.6 0.1 1.9 2 0 0 2 2 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|549455801|ref|YP_008604560.1| - 1.2e-18 67.0 3.3 1.5e-18 66.7 1.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|549455801|ref|YP_008604560.1| - 1.3e-07 31.1 0.7 3.3e-07 29.8 0.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|549455801|ref|YP_008604560.1| - 6.9e-06 26.0 0.1 1.6e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|549455801|ref|YP_008604560.1| - 2.1e-05 24.9 0.1 0.00012 22.5 0.1 2.1 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|549455801|ref|YP_008604560.1| - 0.0028 17.5 0.3 1.1 9.0 0.0 2.7 2 1 1 3 3 3 2 Dynamin family Septin PF00735.13 gi|549455801|ref|YP_008604560.1| - 0.007 15.4 0.0 0.016 14.2 0.0 1.5 1 1 0 1 1 1 1 Septin MRP-S22 PF10245.4 gi|549455801|ref|YP_008604560.1| - 0.016 14.6 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S22 Ras PF00071.17 gi|549455801|ref|YP_008604560.1| - 0.039 13.3 0.3 0.42 9.9 0.0 2.2 2 0 0 2 2 2 0 Ras family Arf PF00025.16 gi|549455801|ref|YP_008604560.1| - 0.11 11.7 0.2 0.56 9.4 0.0 2.0 2 0 0 2 2 2 0 ADP-ribosylation factor family TetR_C_2 PF08361.6 gi|549455801|ref|YP_008604560.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region Ribosomal_S7 PF00177.16 gi|549455802|ref|YP_008604561.1| - 1.1e-45 154.7 0.0 1.9e-45 154.0 0.0 1.3 2 0 0 2 2 2 1 Ribosomal protein S7p/S5e DNase-RNase PF02577.9 gi|549455803|ref|YP_008604562.1| - 4.2e-09 35.7 0.1 5.5e-09 35.3 0.1 1.1 1 0 0 1 1 1 1 Bifunctional nuclease Ribosom_S12_S23 PF00164.20 gi|549455804|ref|YP_008604563.1| - 2.9e-39 133.2 0.3 3.3e-39 133.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|549455805|ref|YP_008604564.1| - 3.2e-20 71.4 8.1 1.6e-12 46.8 0.5 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|549455805|ref|YP_008604564.1| - 5.4e-12 45.3 3.3 1.7e-10 40.5 0.1 2.2 2 0 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.1 gi|549455805|ref|YP_008604564.1| - 3.3e-09 36.2 2.0 8.5e-05 22.1 0.3 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|549455805|ref|YP_008604564.1| - 4.7e-09 35.7 3.8 0.00019 21.0 0.2 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|549455805|ref|YP_008604564.1| - 0.021 14.4 3.7 3.5 7.3 0.1 2.8 2 0 0 2 2 2 0 KH domain Ribosomal_L7Ae PF01248.21 gi|549455806|ref|YP_008604565.1| - 2.2e-21 75.1 0.1 2.5e-21 75.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Peptidase_M42 PF05343.9 gi|549455806|ref|YP_008604565.1| - 0.045 12.5 0.0 0.052 12.3 0.0 1.1 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase FdhD-NarQ PF02634.10 gi|549455806|ref|YP_008604565.1| - 0.12 11.7 0.0 0.13 11.6 0.0 1.2 1 1 0 1 1 1 0 FdhD/NarQ family RNA_pol_Rpb1_5 PF04998.12 gi|549455807|ref|YP_008604566.1| - 1.2e-50 172.2 0.2 1.7e-50 171.8 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 FhuF PF06276.7 gi|549455807|ref|YP_008604566.1| - 0.035 14.0 0.0 0.066 13.1 0.0 1.4 1 0 0 1 1 1 0 Ferric iron reductase FhuF-like transporter DUF4373 PF14297.1 gi|549455807|ref|YP_008604566.1| - 0.11 12.8 1.2 2.2 8.6 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4373) RNA_pol_Rpb1_1 PF04997.7 gi|549455808|ref|YP_008604567.1| - 1.1e-68 231.9 0.0 2.5e-67 227.5 0.0 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|549455808|ref|YP_008604567.1| - 3.7e-66 222.1 0.0 7.3e-66 221.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|549455808|ref|YP_008604567.1| - 7.3e-40 136.2 0.0 1.6e-39 135.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|549455808|ref|YP_008604567.1| - 4.8e-32 109.9 0.0 1.1e-31 108.7 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|549455808|ref|YP_008604567.1| - 2e-29 102.7 0.4 3.5e-29 101.9 0.1 1.6 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.1 gi|549455808|ref|YP_008604567.1| - 0.049 12.8 3.1 0.36 10.1 0.0 2.8 2 1 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|549455808|ref|YP_008604567.1| - 2.1 8.3 6.9 0.62 10.0 0.0 2.8 3 0 0 3 3 3 0 Zinc ribbon domain RNA_pol_Rpb2_6 PF00562.23 gi|549455809|ref|YP_008604568.1| - 2.9e-122 408.1 0.0 4e-122 407.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|549455809|ref|YP_008604568.1| - 2.2e-46 157.3 0.0 3.2e-46 156.8 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|549455809|ref|YP_008604568.1| - 3.9e-30 104.6 0.0 6.3e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.15 gi|549455809|ref|YP_008604568.1| - 4.2e-28 97.4 0.0 1e-27 96.1 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.11 gi|549455809|ref|YP_008604568.1| - 4e-25 87.3 0.0 8.9e-25 86.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.8 gi|549455809|ref|YP_008604568.1| - 1.7e-15 56.5 0.2 4.6e-15 55.1 0.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|549455809|ref|YP_008604568.1| - 9.4e-12 44.7 1.3 2.1e-11 43.6 0.9 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb5_C PF01191.14 gi|549455810|ref|YP_008604569.1| - 8.5e-28 95.7 0.1 1e-27 95.4 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Metallophos PF00149.23 gi|549455811|ref|YP_008604570.1| - 4.4e-08 32.7 0.0 1.9e-07 30.7 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|549455811|ref|YP_008604570.1| - 3.1e-06 27.0 0.0 1.5e-05 24.8 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TBP PF00352.16 gi|549455812|ref|YP_008604571.1| - 2.4e-68 225.5 1.2 1e-35 120.9 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|549455812|ref|YP_008604571.1| - 4.3e-06 26.6 0.0 0.02 14.9 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Radical_SAM PF04055.16 gi|549455814|ref|YP_008604573.1| - 1.1e-20 74.4 0.0 7.6e-20 71.7 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily zinc_ribbon_2 PF13240.1 gi|549455814|ref|YP_008604573.1| - 4.9e-05 22.6 0.2 4.9e-05 22.6 0.2 2.1 2 0 0 2 2 1 1 zinc-ribbon domain Fer4_12 PF13353.1 gi|549455814|ref|YP_008604573.1| - 0.00028 21.0 0.0 0.0005 20.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TF_Zn_Ribbon PF08271.7 gi|549455814|ref|YP_008604573.1| - 0.0015 17.8 4.3 0.048 12.9 0.0 2.8 3 0 0 3 3 3 2 TFIIB zinc-binding DZR PF12773.2 gi|549455814|ref|YP_008604573.1| - 0.012 15.4 0.1 0.012 15.4 0.1 2.7 3 1 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|549455814|ref|YP_008604573.1| - 0.015 14.5 4.0 0.015 14.5 2.8 3.0 2 1 1 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|549455814|ref|YP_008604573.1| - 0.037 13.6 0.4 0.13 11.9 0.2 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF1610 PF07754.6 gi|549455814|ref|YP_008604573.1| - 0.044 13.9 6.5 0.91 9.7 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Fer4_14 PF13394.1 gi|549455814|ref|YP_008604573.1| - 0.049 13.6 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain zf-NADH-PPase PF09297.6 gi|549455814|ref|YP_008604573.1| - 0.064 12.7 1.6 6.2 6.4 0.0 2.7 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|549455814|ref|YP_008604573.1| - 0.34 10.3 5.8 5 6.6 0.1 3.4 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-C4_Topoisom PF01396.14 gi|549455814|ref|YP_008604573.1| - 0.85 9.1 0.0 0.85 9.1 0.0 3.5 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.1 gi|549455814|ref|YP_008604573.1| - 1.1 9.3 0.1 1.1 9.3 0.0 3.3 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2258 PF10015.4 gi|549455815|ref|YP_008604574.1| - 4.4e-31 106.5 3.5 4.6e-31 106.4 0.5 2.3 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2258) MS_channel PF00924.13 gi|549455816|ref|YP_008604575.1| - 1.2e-43 148.8 0.5 1.2e-43 148.8 0.3 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF4117 PF13491.1 gi|549455816|ref|YP_008604575.1| - 0.16 11.4 9.4 0.25 10.7 6.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4117) DUF432 PF04254.8 gi|549455817|ref|YP_008604576.1| - 3.3e-30 104.5 0.0 5.2e-30 103.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF432) HMG-CoA_red PF00368.13 gi|549455818|ref|YP_008604577.1| - 5.2e-146 486.0 0.0 6e-146 485.8 0.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF35_N PF12172.3 gi|549455819|ref|YP_008604578.1| - 2e-11 43.4 4.5 2e-11 43.4 3.1 1.6 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|549455819|ref|YP_008604578.1| - 1.7e-10 40.9 1.4 2.4e-10 40.4 1.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DZR PF12773.2 gi|549455819|ref|YP_008604578.1| - 0.0021 17.8 0.5 0.003 17.3 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|549455819|ref|YP_008604578.1| - 0.011 15.1 4.9 0.019 14.4 3.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|549455819|ref|YP_008604578.1| - 0.017 14.2 7.3 0.031 13.5 5.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.1 gi|549455819|ref|YP_008604578.1| - 0.084 12.6 1.2 6 6.7 0.1 2.3 2 0 0 2 2 2 0 YhfH-like protein HypA PF01155.14 gi|549455819|ref|YP_008604578.1| - 0.14 11.8 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|549455819|ref|YP_008604578.1| - 0.25 11.6 2.5 0.75 10.1 0.1 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2H2 PF00096.21 gi|549455819|ref|YP_008604578.1| - 0.39 11.1 3.9 1.7 9.1 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-CHCC PF10276.4 gi|549455819|ref|YP_008604578.1| - 0.65 9.8 0.2 0.65 9.8 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger domain TF_Zn_Ribbon PF08271.7 gi|549455819|ref|YP_008604578.1| - 1.9 7.9 5.4 1.5 8.1 0.1 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding Thiolase_C PF02803.13 gi|549455820|ref|YP_008604579.1| - 0.00058 19.2 0.8 0.0012 18.2 0.1 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain MgtC PF02308.11 gi|549455820|ref|YP_008604579.1| - 0.022 14.6 0.5 0.043 13.6 0.4 1.4 1 0 0 1 1 1 0 MgtC family ACP_syn_III PF08545.5 gi|549455820|ref|YP_008604579.1| - 0.07 12.7 5.3 0.35 10.5 0.2 2.8 2 1 1 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.5 gi|549455821|ref|YP_008604580.1| - 6.2e-10 38.9 0.0 1.4e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|549455821|ref|YP_008604580.1| - 0.00054 19.5 0.0 0.046 13.1 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|549455821|ref|YP_008604580.1| - 0.0039 16.8 2.0 0.0039 16.8 1.4 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Radical_SAM PF04055.16 gi|549455822|ref|YP_008604581.1| - 8.3e-23 81.3 0.0 1.3e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|549455822|ref|YP_008604581.1| - 0.074 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Rhomboid PF01694.17 gi|549455824|ref|YP_008604583.1| - 3.5e-32 111.4 21.1 3.5e-32 111.4 14.6 1.9 2 1 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|549455824|ref|YP_008604583.1| - 0.0028 17.9 0.3 0.0028 17.9 0.2 2.1 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) UbiA PF01040.13 gi|549455825|ref|YP_008604584.1| - 6.7e-39 133.6 24.9 8.7e-39 133.2 17.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family BNR_2 PF13088.1 gi|549455827|ref|YP_008604586.1| - 7.4e-09 35.2 0.0 3.2e-08 33.1 0.0 2.2 1 1 0 1 1 1 1 BNR repeat-like domain BNR PF02012.15 gi|549455827|ref|YP_008604586.1| - 4.1e-05 22.7 15.2 0.66 10.0 1.3 4.7 4 0 0 4 4 4 3 BNR/Asp-box repeat Gp58 PF07902.6 gi|549455827|ref|YP_008604586.1| - 0.00094 17.5 4.6 0.0014 16.9 3.2 1.2 1 0 0 1 1 1 1 gp58-like protein DUF4185 PF13810.1 gi|549455827|ref|YP_008604586.1| - 0.0014 17.6 0.1 1.8 7.3 0.0 3.1 2 2 1 3 3 3 2 Domain of unknown function (DUF4185) Apolipoprotein PF01442.13 gi|549455827|ref|YP_008604586.1| - 0.0029 17.1 0.8 0.005 16.3 0.6 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain IncA PF04156.9 gi|549455827|ref|YP_008604586.1| - 0.0075 15.8 1.5 0.019 14.5 1.0 1.7 1 0 0 1 1 1 1 IncA protein Baculo_PEP_C PF04513.7 gi|549455827|ref|YP_008604586.1| - 0.011 15.5 4.9 0.034 13.9 3.0 1.9 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Filament PF00038.16 gi|549455827|ref|YP_008604586.1| - 0.033 13.6 3.1 0.049 13.0 1.2 1.8 1 1 1 2 2 2 0 Intermediate filament protein NPV_P10 PF05531.7 gi|549455827|ref|YP_008604586.1| - 0.046 13.9 4.0 0.05 13.8 1.1 2.2 1 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|549455827|ref|YP_008604586.1| - 0.061 11.9 2.6 0.094 11.3 1.8 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein STAT_alpha PF01017.15 gi|549455827|ref|YP_008604586.1| - 0.072 12.8 0.1 0.14 11.8 0.1 1.5 1 1 0 1 1 1 0 STAT protein, all-alpha domain DUF1664 PF07889.7 gi|549455827|ref|YP_008604586.1| - 0.09 12.5 4.3 0.084 12.6 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|549455827|ref|YP_008604586.1| - 0.1 12.3 3.2 0.19 11.4 2.2 1.4 1 0 0 1 1 1 0 Laminin Domain II Reo_sigmaC PF04582.7 gi|549455827|ref|YP_008604586.1| - 0.11 11.6 6.6 0.21 10.7 4.6 1.4 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Tropomyosin_1 PF12718.2 gi|549455827|ref|YP_008604586.1| - 0.14 12.0 1.8 0.23 11.2 1.2 1.3 1 0 0 1 1 1 0 Tropomyosin like TMF_DNA_bd PF12329.3 gi|549455827|ref|YP_008604586.1| - 0.18 11.6 3.5 2.1 8.2 0.8 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Orthopox_A5L PF06193.6 gi|549455827|ref|YP_008604586.1| - 0.18 11.7 1.5 0.29 11.0 1.0 1.3 1 0 0 1 1 1 0 Orthopoxvirus A5L protein-like DUF3584 PF12128.3 gi|549455827|ref|YP_008604586.1| - 0.21 8.9 4.2 0.28 8.4 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.1 gi|549455827|ref|YP_008604586.1| - 0.21 10.0 2.5 0.29 9.5 1.8 1.1 1 0 0 1 1 1 0 AAA domain HAUS-augmin3 PF14932.1 gi|549455827|ref|YP_008604586.1| - 0.37 9.9 1.5 0.57 9.3 1.0 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 IFT57 PF10498.4 gi|549455827|ref|YP_008604586.1| - 0.43 9.2 2.1 0.61 8.7 1.4 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 PNP_UDP_1 PF01048.15 gi|549455828|ref|YP_008604587.1| - 1.5e-48 164.8 0.0 1.7e-48 164.6 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily NinB PF05772.7 gi|549455828|ref|YP_008604587.1| - 0.069 12.7 0.0 0.27 10.9 0.0 1.8 1 1 1 2 2 2 0 NinB protein Fucose_iso_C PF02952.12 gi|549455830|ref|YP_008604589.1| - 3.3e-14 52.5 0.0 5.3e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain Methyltransf_11 PF08241.7 gi|549455831|ref|YP_008604590.1| - 4.7e-11 43.0 0.0 7.1e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|549455831|ref|YP_008604590.1| - 3.8e-05 23.4 0.0 0.00023 20.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|549455831|ref|YP_008604590.1| - 0.048 14.1 0.0 0.72 10.3 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|549455831|ref|YP_008604590.1| - 0.13 12.8 0.0 0.7 10.4 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain ABC_tran PF00005.22 gi|549455833|ref|YP_008604592.1| - 8.3e-39 133.0 0.0 1.1e-38 132.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455833|ref|YP_008604592.1| - 3.4e-13 50.2 0.0 5.5e-07 29.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|549455833|ref|YP_008604592.1| - 2e-07 30.4 0.2 2.1e-05 23.8 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|549455833|ref|YP_008604592.1| - 6e-07 29.6 0.2 1.2e-06 28.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|549455833|ref|YP_008604592.1| - 2.3e-06 27.0 0.1 4.1e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|549455833|ref|YP_008604592.1| - 9.5e-05 22.2 0.2 0.00044 20.1 0.2 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|549455833|ref|YP_008604592.1| - 0.00033 19.3 0.1 0.57 8.6 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|549455833|ref|YP_008604592.1| - 0.00086 18.5 0.1 0.0013 17.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 T2SE PF00437.15 gi|549455833|ref|YP_008604592.1| - 0.0011 17.9 0.1 0.01 14.7 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein NACHT PF05729.7 gi|549455833|ref|YP_008604592.1| - 0.0013 18.4 0.0 0.07 12.7 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.1 gi|549455833|ref|YP_008604592.1| - 0.0014 18.7 0.2 0.0072 16.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|549455833|ref|YP_008604592.1| - 0.0014 18.9 0.0 0.0023 18.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|549455833|ref|YP_008604592.1| - 0.0015 17.6 0.0 0.24 10.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Cuticle_1 PF08140.6 gi|549455833|ref|YP_008604592.1| - 0.0018 18.0 0.0 0.012 15.3 0.1 2.1 2 0 0 2 2 2 1 Crustacean cuticle protein repeat AAA_10 PF12846.2 gi|549455833|ref|YP_008604592.1| - 0.0021 17.5 0.7 0.031 13.6 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_19 PF13245.1 gi|549455833|ref|YP_008604592.1| - 0.0025 17.5 0.0 0.0084 15.8 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|549455833|ref|YP_008604592.1| - 0.0029 16.8 0.1 0.0072 15.5 0.0 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|549455833|ref|YP_008604592.1| - 0.0034 18.1 0.3 0.012 16.4 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|549455833|ref|YP_008604592.1| - 0.0042 17.2 0.0 0.023 14.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|549455833|ref|YP_008604592.1| - 0.0081 15.5 0.0 0.18 11.2 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|549455833|ref|YP_008604592.1| - 0.0091 15.8 0.3 0.036 13.9 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|549455833|ref|YP_008604592.1| - 0.0096 15.5 0.0 0.023 14.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|549455833|ref|YP_008604592.1| - 0.0097 15.3 0.4 0.12 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|549455833|ref|YP_008604592.1| - 0.019 14.6 0.0 0.034 13.8 0.0 1.5 2 0 0 2 2 1 0 Archaeal ATPase AAA_24 PF13479.1 gi|549455833|ref|YP_008604592.1| - 0.029 13.9 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|549455833|ref|YP_008604592.1| - 0.033 12.8 0.0 0.045 12.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.1 gi|549455833|ref|YP_008604592.1| - 0.042 14.1 0.0 0.079 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|549455833|ref|YP_008604592.1| - 0.054 12.9 0.8 0.17 11.3 0.2 2.1 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|549455833|ref|YP_008604592.1| - 0.061 13.2 0.0 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|549455833|ref|YP_008604592.1| - 0.067 12.6 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|549455833|ref|YP_008604592.1| - 0.088 12.7 0.1 0.2 11.5 0.0 1.6 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.10 gi|549455833|ref|YP_008604592.1| - 0.097 12.3 0.1 0.38 10.4 0.0 2.0 2 1 0 2 2 2 0 NTPase MMR_HSR1 PF01926.18 gi|549455833|ref|YP_008604592.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|549455833|ref|YP_008604592.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|549455833|ref|YP_008604592.1| - 0.13 12.7 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein BPD_transp_1 PF00528.17 gi|549455834|ref|YP_008604593.1| - 5.5e-18 65.1 10.0 5.5e-18 65.1 6.9 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|549455835|ref|YP_008604594.1| - 7.5e-52 175.8 0.2 8.8e-52 175.5 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|549455835|ref|YP_008604594.1| - 0.001 18.6 1.2 0.11 12.0 0.1 2.1 1 1 1 2 2 2 2 NMT1/THI5 like YhfZ_C PF14503.1 gi|549455835|ref|YP_008604594.1| - 0.0033 16.8 0.3 1.4 8.1 0.0 2.2 1 1 1 2 2 2 2 YhfZ C-terminal domain Phosphonate-bd PF12974.2 gi|549455835|ref|YP_008604594.1| - 0.0041 16.5 0.2 0.11 11.9 0.1 2.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF2613 PF11021.3 gi|549455835|ref|YP_008604594.1| - 0.0054 16.4 0.8 0.01 15.5 0.6 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2613) ACT_7 PF13840.1 gi|549455836|ref|YP_008604595.1| - 9.9e-13 47.4 1.5 4e-09 35.8 0.2 2.4 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|549455836|ref|YP_008604595.1| - 0.00034 20.0 0.8 0.0016 17.9 0.0 2.4 3 0 0 3 3 3 1 ACT domain DUF2791 PF10923.3 gi|549455836|ref|YP_008604595.1| - 0.037 12.6 0.0 0.059 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) T2SF PF00482.18 gi|549455837|ref|YP_008604596.1| - 2.9e-16 59.4 9.2 2e-08 34.2 0.1 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Trp_oprn_chp PF09534.5 gi|549455837|ref|YP_008604596.1| - 2.7 7.5 10.0 0.16 11.5 0.6 2.8 3 0 0 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) T2SE PF00437.15 gi|549455838|ref|YP_008604597.1| - 2.6e-49 167.5 0.0 3.7e-49 167.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|549455838|ref|YP_008604597.1| - 2.2e-06 27.0 0.0 4e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|549455838|ref|YP_008604597.1| - 0.00078 19.7 0.0 0.0039 17.4 0.0 2.1 3 0 0 3 3 3 1 ABC transporter FtsK_SpoIIIE PF01580.13 gi|549455838|ref|YP_008604597.1| - 0.014 14.8 0.0 0.25 10.7 0.0 2.6 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|549455838|ref|YP_008604597.1| - 0.054 13.6 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|549455838|ref|YP_008604597.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_23 PF13476.1 gi|549455838|ref|YP_008604597.1| - 0.16 12.2 0.2 0.39 11.0 0.2 1.6 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|549455839|ref|YP_008604598.1| - 3.2e-16 59.1 0.0 3.8e-16 58.8 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_22 PF13401.1 gi|549455839|ref|YP_008604598.1| - 2.5e-05 24.4 0.0 5.2e-05 23.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|549455839|ref|YP_008604598.1| - 0.0049 17.1 0.0 0.0069 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF835 PF05763.7 gi|549455839|ref|YP_008604598.1| - 0.0056 16.2 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Rad51 PF08423.6 gi|549455839|ref|YP_008604598.1| - 0.0094 14.8 0.0 0.02 13.7 0.0 1.5 1 1 0 1 1 1 1 Rad51 RecA PF00154.16 gi|549455839|ref|YP_008604598.1| - 0.011 14.8 0.1 0.017 14.2 0.1 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|549455839|ref|YP_008604598.1| - 0.012 15.0 0.1 0.035 13.5 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|549455839|ref|YP_008604598.1| - 0.02 14.3 0.0 0.036 13.4 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|549455839|ref|YP_008604598.1| - 0.021 14.5 0.1 0.16 11.7 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain PAXNEB PF05625.6 gi|549455839|ref|YP_008604598.1| - 0.03 13.1 0.2 0.34 9.7 0.0 1.9 2 0 0 2 2 2 0 PAXNEB protein AAA_16 PF13191.1 gi|549455839|ref|YP_008604598.1| - 0.054 13.4 0.1 0.085 12.8 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|549455839|ref|YP_008604598.1| - 0.087 13.6 0.1 0.13 13.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|549455839|ref|YP_008604598.1| - 0.11 12.1 0.1 4.9 6.6 0.0 2.4 3 0 0 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|549455839|ref|YP_008604598.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase VirC2 PF07181.6 gi|549455839|ref|YP_008604598.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 VirC2 protein AAA_14 PF13173.1 gi|549455839|ref|YP_008604598.1| - 0.14 12.0 0.1 0.58 10.0 0.0 2.2 1 1 0 1 1 1 0 AAA domain Arch_flagellin PF01917.11 gi|549455841|ref|YP_008604600.1| - 1.6e-08 34.4 1.4 7e-08 32.3 1.0 1.8 1 1 0 1 1 1 1 Archaebacterial flagellin Pertactin PF03212.9 gi|549455841|ref|YP_008604600.1| - 0.1 12.3 0.1 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Pertactin SinI PF08671.5 gi|549455842|ref|YP_008604601.1| - 0.003 16.9 0.1 0.015 14.6 0.0 2.0 2 0 0 2 2 2 1 Anti-repressor SinI Arch_flagellin PF01917.11 gi|549455843|ref|YP_008604602.1| - 1.5e-26 93.2 0.9 2.2e-26 92.6 0.6 1.3 1 1 0 1 1 1 1 Archaebacterial flagellin DUF1469 PF07332.6 gi|549455843|ref|YP_008604602.1| - 0.011 15.4 1.7 0.02 14.6 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) EIID-AGA PF03613.9 gi|549455843|ref|YP_008604602.1| - 0.11 11.4 0.3 0.12 11.2 0.2 1.1 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component DUF3185 PF11381.3 gi|549455844|ref|YP_008604603.1| - 0.17 11.6 4.4 1.2 9.0 1.8 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) DUF3040 PF11239.3 gi|549455844|ref|YP_008604603.1| - 1.5 8.9 4.7 13 5.9 2.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) ABC2_membrane_3 PF12698.2 gi|549455845|ref|YP_008604604.1| - 0.025 13.6 21.1 0.035 13.1 14.6 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|549455845|ref|YP_008604604.1| - 2.1 7.4 24.3 3.1 6.8 16.8 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|549455845|ref|YP_008604604.1| - 6.4 5.5 28.2 0.38 9.5 13.4 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|549455846|ref|YP_008604605.1| - 2.9e-26 92.4 0.0 4e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455846|ref|YP_008604605.1| - 4e-11 43.4 0.6 2.1e-05 24.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|549455846|ref|YP_008604605.1| - 0.00038 20.0 0.1 0.57 9.5 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain ArgK PF03308.11 gi|549455846|ref|YP_008604605.1| - 0.00055 18.7 0.2 0.00086 18.1 0.1 1.2 1 0 0 1 1 1 1 ArgK protein AAA_33 PF13671.1 gi|549455846|ref|YP_008604605.1| - 0.0018 18.1 0.0 0.01 15.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|549455846|ref|YP_008604605.1| - 0.0049 17.0 0.0 0.024 14.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|549455846|ref|YP_008604605.1| - 0.0052 16.2 0.2 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.17 gi|549455846|ref|YP_008604605.1| - 0.015 14.7 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|549455846|ref|YP_008604605.1| - 0.017 15.1 2.6 0.089 12.7 1.7 2.4 1 1 1 2 2 2 0 AAA ATPase domain PIN PF01850.16 gi|549455846|ref|YP_008604605.1| - 0.036 14.3 0.3 0.071 13.4 0.2 1.5 1 0 0 1 1 1 0 PIN domain AAA_23 PF13476.1 gi|549455846|ref|YP_008604605.1| - 0.041 14.2 0.1 0.062 13.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|549455846|ref|YP_008604605.1| - 0.066 12.6 0.2 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|549455846|ref|YP_008604605.1| - 0.072 12.7 0.1 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|549455846|ref|YP_008604605.1| - 0.12 11.7 0.5 0.59 9.5 0.4 2.2 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|549455846|ref|YP_008604605.1| - 0.16 11.1 0.0 1.8 7.7 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|549455846|ref|YP_008604605.1| - 0.16 11.0 0.1 0.27 10.3 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.1 gi|549455846|ref|YP_008604605.1| - 9.9 6.0 9.3 0.48 10.2 0.3 2.7 3 0 0 3 3 3 0 Part of AAA domain MFS_1 PF07690.11 gi|549455847|ref|YP_008604606.1| - 6.6e-21 74.4 61.8 4.3e-16 58.5 18.3 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|549455847|ref|YP_008604606.1| - 0.0008 18.0 2.0 0.0008 18.0 1.4 2.7 2 1 1 3 3 3 1 Sugar (and other) transporter LacY_symp PF01306.14 gi|549455847|ref|YP_008604606.1| - 0.072 11.6 0.3 0.2 10.1 0.0 1.8 2 1 1 3 3 3 0 LacY proton/sugar symporter MFS_3 PF05977.8 gi|549455847|ref|YP_008604606.1| - 5.7 4.9 33.4 0.21 9.6 3.0 3.2 2 1 1 3 3 3 0 Transmembrane secretion effector Peptidase_M20 PF01546.23 gi|549455848|ref|YP_008604607.1| - 1.5e-33 115.8 0.0 2e-33 115.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 SNARE_assoc PF09335.6 gi|549455851|ref|YP_008604610.1| - 1.4e-07 31.7 8.2 1.4e-07 31.7 5.7 2.1 2 0 0 2 2 2 1 SNARE associated Golgi protein ABC2_membrane_3 PF12698.2 gi|549455852|ref|YP_008604611.1| - 1e-24 87.2 6.6 1.6e-24 86.5 4.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|549455852|ref|YP_008604611.1| - 1.3e-23 83.2 2.0 2e-23 82.6 1.4 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|549455852|ref|YP_008604611.1| - 3.2e-09 36.2 8.9 4.8e-09 35.7 6.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|549455852|ref|YP_008604611.1| - 9.4e-09 34.7 12.3 9.4e-09 34.7 8.5 2.2 3 0 0 3 3 3 1 ABC-2 type transporter ABC_tran PF00005.22 gi|549455853|ref|YP_008604612.1| - 4.8e-22 78.7 0.0 6.8e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455853|ref|YP_008604612.1| - 1.5e-11 44.8 0.0 1.4e-09 38.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|549455853|ref|YP_008604612.1| - 0.0018 16.8 0.0 0.21 10.0 0.0 2.0 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|549455853|ref|YP_008604612.1| - 0.015 14.5 0.0 0.96 8.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|549455853|ref|YP_008604612.1| - 0.017 14.6 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|549455853|ref|YP_008604612.1| - 0.021 14.5 0.1 1.9 8.3 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain SRP54 PF00448.17 gi|549455853|ref|YP_008604612.1| - 0.039 13.3 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|549455853|ref|YP_008604612.1| - 0.047 12.4 0.1 0.078 11.7 0.1 1.3 1 0 0 1 1 1 0 ArgK protein DUF87 PF01935.12 gi|549455854|ref|YP_008604613.1| - 0.003 17.4 0.2 0.0039 17.0 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF137 PF02006.11 gi|549455855|ref|YP_008604614.1| - 4.1e-67 224.9 0.1 5e-67 224.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 GHMP_kinases_N PF00288.21 gi|549455856|ref|YP_008604615.1| - 0.57 10.2 5.7 2 8.5 4.0 2.0 1 1 0 1 1 1 0 GHMP kinases N terminal domain SIS PF01380.17 gi|549455857|ref|YP_008604616.1| - 4.9e-17 61.7 0.0 9.5e-17 60.8 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|549455857|ref|YP_008604616.1| - 7.4e-13 48.4 1.0 4.8e-08 32.8 0.4 2.2 1 1 1 2 2 2 2 SIS domain AlaDh_PNT_C PF01262.16 gi|549455857|ref|YP_008604616.1| - 0.097 12.2 1.3 2.1 7.8 0.2 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NTP_transf_2 PF01909.18 gi|549455858|ref|YP_008604617.1| - 0.021 15.1 0.1 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyltransferase domain NTP_transf_2 PF01909.18 gi|549455859|ref|YP_008604618.1| - 4.3e-05 23.7 0.0 7.3e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF2450 PF10475.4 gi|549455861|ref|YP_008604620.1| - 0.13 11.1 0.3 1.6 7.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) Spc7_N PF15402.1 gi|549455862|ref|YP_008604621.1| - 0.01 13.9 1.0 0.01 13.9 0.7 1.1 1 0 0 1 1 1 0 N-terminus of kinetochore NMS complex subunit Spc7 Innate_immun PF12782.2 gi|549455862|ref|YP_008604621.1| - 0.02 14.1 4.2 0.018 14.2 2.9 1.1 1 0 0 1 1 1 0 Invertebrate innate immunity transcript family DUF1796 PF08795.5 gi|549455862|ref|YP_008604621.1| - 0.022 14.3 1.4 0.027 14.1 1.0 1.1 1 0 0 1 1 1 0 Putative papain-like cysteine peptidase (DUF1796) Zip PF02535.17 gi|549455862|ref|YP_008604621.1| - 0.031 13.2 7.0 0.036 13.0 4.9 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter DUF2611 PF11022.3 gi|549455862|ref|YP_008604621.1| - 0.039 14.0 1.9 0.76 9.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2611) DUF4422 PF14393.1 gi|549455862|ref|YP_008604621.1| - 0.08 12.5 0.8 0.096 12.2 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4422) CPSF73-100_C PF11718.3 gi|549455862|ref|YP_008604621.1| - 0.3 10.4 4.4 0.37 10.1 3.1 1.2 1 0 0 1 1 1 0 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term Prefoldin PF02996.12 gi|549455862|ref|YP_008604621.1| - 0.33 10.5 3.3 2.9 7.5 0.0 2.8 3 0 0 3 3 3 0 Prefoldin subunit TPR_MLP1_2 PF07926.7 gi|549455862|ref|YP_008604621.1| - 0.44 10.2 6.6 0.14 11.8 1.6 2.0 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Cep57_CLD_2 PF14197.1 gi|549455862|ref|YP_008604621.1| - 0.65 9.9 7.0 0.18 11.7 1.6 2.3 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 Atg14 PF10186.4 gi|549455862|ref|YP_008604621.1| - 1.5 7.6 5.8 1.8 7.4 4.0 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 SelP_N PF04592.9 gi|549455862|ref|YP_008604621.1| - 1.8 7.8 8.9 2.4 7.5 6.2 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region zf-ZPR1 PF03367.8 gi|549455863|ref|YP_008604622.1| - 6.7e-32 109.8 0.0 8.8e-32 109.4 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Zn-ribbon_8 PF09723.5 gi|549455863|ref|YP_008604622.1| - 0.015 15.2 0.6 0.59 10.1 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|549455863|ref|YP_008604622.1| - 0.029 14.2 1.7 4.8 7.1 0.1 2.6 2 0 0 2 2 2 0 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|549455863|ref|YP_008604622.1| - 0.21 11.4 1.2 1.1 9.0 0.9 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|549455863|ref|YP_008604622.1| - 0.31 10.3 0.1 0.31 10.3 0.0 2.7 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|549455863|ref|YP_008604622.1| - 0.38 10.4 2.2 0.6 9.8 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|549455863|ref|YP_008604622.1| - 1.3 8.5 4.9 17 4.9 0.6 2.7 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit HSP20 PF00011.16 gi|549455864|ref|YP_008604623.1| - 1.8e-11 43.8 2.5 6.4e-10 38.8 1.7 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|549455864|ref|YP_008604623.1| - 6e-07 29.9 0.3 9.3e-07 29.3 0.2 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|549455864|ref|YP_008604623.1| - 9.8e-06 25.3 0.1 1.2e-05 25.0 0.1 1.1 1 0 0 1 1 1 1 GvpH DUF3014 PF11219.3 gi|549455864|ref|YP_008604623.1| - 0.012 15.4 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3014) HlyD_3 PF13437.1 gi|549455864|ref|YP_008604623.1| - 0.016 15.5 0.2 0.024 14.9 0.1 1.3 1 0 0 1 1 1 0 HlyD family secretion protein DPCD PF14913.1 gi|549455864|ref|YP_008604623.1| - 0.069 12.2 0.1 0.098 11.7 0.1 1.3 1 0 0 1 1 1 0 DPCD protein family DAO PF01266.19 gi|549455865|ref|YP_008604624.1| - 1.2e-09 37.6 0.1 0.0011 17.9 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|549455865|ref|YP_008604624.1| - 5.4e-06 25.6 0.4 0.0092 15.0 0.1 3.0 3 0 0 3 3 3 1 FAD binding domain FAD_binding_2 PF00890.19 gi|549455865|ref|YP_008604624.1| - 2.4e-05 23.3 0.2 0.078 11.8 0.0 2.8 3 1 1 4 4 4 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|549455865|ref|YP_008604624.1| - 5.7e-05 23.0 0.0 8.5e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|549455865|ref|YP_008604624.1| - 0.0012 17.9 0.0 0.0089 15.1 0.0 2.3 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.9 gi|549455865|ref|YP_008604624.1| - 0.0012 17.5 0.0 0.051 12.2 0.0 2.5 2 1 0 2 2 2 1 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|549455865|ref|YP_008604624.1| - 0.0053 15.7 0.5 0.056 12.3 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|549455865|ref|YP_008604624.1| - 0.0066 15.5 0.2 0.067 12.2 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|549455865|ref|YP_008604624.1| - 0.034 13.0 0.0 0.057 12.2 0.0 1.3 1 1 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|549455865|ref|YP_008604624.1| - 0.042 13.8 0.3 0.3 11.1 0.1 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Acetyltransf_1 PF00583.19 gi|549455866|ref|YP_008604625.1| - 6e-20 71.0 0.0 8.9e-20 70.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|549455866|ref|YP_008604625.1| - 1.5e-12 47.0 0.0 2.7e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|549455866|ref|YP_008604625.1| - 2.3e-11 43.6 0.0 9.3e-11 41.7 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|549455866|ref|YP_008604625.1| - 8.4e-11 41.9 0.0 1.9e-10 40.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|549455866|ref|YP_008604625.1| - 1.3e-09 38.1 0.0 2.7e-08 33.9 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|549455866|ref|YP_008604625.1| - 5.1e-08 33.0 0.0 2.5e-06 27.5 0.0 2.4 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|549455866|ref|YP_008604625.1| - 9.8e-06 25.7 0.0 1.5e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|549455866|ref|YP_008604625.1| - 2.6e-05 24.0 0.1 0.00034 20.4 0.0 2.3 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|549455866|ref|YP_008604625.1| - 0.0035 16.9 0.0 0.0061 16.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|549455866|ref|YP_008604625.1| - 0.057 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase CMD PF02627.15 gi|549455867|ref|YP_008604626.1| - 0.02 14.7 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family ThiG PF05690.9 gi|549455867|ref|YP_008604626.1| - 0.12 11.4 0.0 0.13 11.2 0.0 1.0 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG DUF1788 PF08747.6 gi|549455867|ref|YP_008604626.1| - 0.14 12.0 0.1 0.85 9.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1788) MotA_activ PF09114.5 gi|549455868|ref|YP_008604627.1| - 0.0089 15.7 0.2 1.6 8.5 0.0 3.3 3 0 0 3 3 3 1 Transcription factor MotA, activation domain RRM_6 PF14259.1 gi|549455868|ref|YP_008604627.1| - 0.019 14.9 0.5 10 6.1 0.0 4.0 4 1 0 4 4 4 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) zf-C2H2_4 PF13894.1 gi|549455869|ref|YP_008604628.1| - 0.00012 22.2 0.2 0.00017 21.6 0.1 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|549455869|ref|YP_008604628.1| - 0.0024 18.1 0.1 0.0035 17.6 0.0 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.3 gi|549455869|ref|YP_008604628.1| - 0.032 14.3 0.0 0.056 13.5 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-met PF12874.2 gi|549455869|ref|YP_008604628.1| - 0.098 12.8 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger of C2H2 type NAD_synthase PF02540.12 gi|549455870|ref|YP_008604629.1| - 4.8e-74 248.3 0.0 5.6e-74 248.0 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|549455870|ref|YP_008604629.1| - 3.5e-06 25.8 0.0 9.6e-05 21.0 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|549455870|ref|YP_008604629.1| - 0.0011 18.2 0.0 0.0072 15.6 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|549455870|ref|YP_008604629.1| - 0.0013 18.2 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase DFP PF04127.10 gi|549455871|ref|YP_008604630.1| - 4.7e-50 169.7 1.1 1.1e-48 165.3 0.0 2.5 3 0 0 3 3 3 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|549455871|ref|YP_008604630.1| - 5.7e-26 90.6 0.2 5.7e-26 90.6 0.2 2.4 3 0 0 3 3 3 1 Flavoprotein DMRL_synthase PF00885.14 gi|549455871|ref|YP_008604630.1| - 0.038 13.6 0.8 0.28 10.8 0.2 2.5 2 0 0 2 2 2 0 6,7-dimethyl-8-ribityllumazine synthase Aldo_ket_red PF00248.16 gi|549455872|ref|YP_008604631.1| - 8.5e-61 205.2 0.0 9.8e-61 205.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family SHMT PF00464.14 gi|549455873|ref|YP_008604632.1| - 9.1e-65 218.5 0.0 1.2e-64 218.1 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|549455873|ref|YP_008604632.1| - 2e-08 33.7 0.0 2.8e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|549455873|ref|YP_008604632.1| - 1.4e-07 30.7 0.0 8.3e-07 28.2 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|549455873|ref|YP_008604632.1| - 0.0024 16.9 0.2 0.0036 16.4 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|549455873|ref|YP_008604632.1| - 0.02 13.6 0.0 0.041 12.6 0.0 1.7 1 1 0 1 1 1 0 Aminotransferase class-V DUF2624 PF11116.3 gi|549455873|ref|YP_008604632.1| - 0.024 15.1 0.1 2.9 8.4 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2624) Fe-ADH PF00465.14 gi|549455874|ref|YP_008604633.1| - 3.6e-97 325.2 0.7 4e-97 325.1 0.5 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|549455874|ref|YP_008604633.1| - 2.7e-22 79.3 1.1 5.4e-11 42.2 0.3 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|549455874|ref|YP_008604633.1| - 0.26 10.1 6.8 0.56 9.0 0.1 3.0 2 1 0 2 2 2 0 3-dehydroquinate synthase Lamprin PF06403.6 gi|549455874|ref|YP_008604633.1| - 0.8 9.4 7.7 1.4 8.6 0.5 2.2 2 0 0 2 2 2 0 Lamprin SCP2 PF02036.12 gi|549455875|ref|YP_008604634.1| - 1.2e-17 64.0 0.0 1.5e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Peptidase_M50 PF02163.17 gi|549455879|ref|YP_008604638.1| - 3.4e-19 68.5 9.5 7.9e-19 67.3 6.6 1.5 1 1 0 1 1 1 1 Peptidase family M50 AA_kinase PF00696.23 gi|549455880|ref|YP_008604639.1| - 9.6e-27 94.0 0.0 1.1e-26 93.8 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family cobW PF02492.14 gi|549455881|ref|YP_008604640.1| - 4.4e-06 26.2 0.0 1e-05 25.0 0.0 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|549455881|ref|YP_008604640.1| - 0.00022 20.7 0.4 0.0038 16.6 0.0 2.3 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|549455881|ref|YP_008604640.1| - 0.0085 15.8 0.0 0.023 14.4 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|549455881|ref|YP_008604640.1| - 0.023 14.2 0.1 0.055 13.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|549455881|ref|YP_008604640.1| - 0.091 11.8 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin tRNA-synt_2b PF00587.20 gi|549455884|ref|YP_008604643.1| - 5e-33 114.1 0.0 8.7e-33 113.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|549455884|ref|YP_008604643.1| - 3.8e-21 75.1 5.9 6.9e-21 74.2 4.1 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain APG6 PF04111.7 gi|549455884|ref|YP_008604643.1| - 0.17 10.8 2.6 0.27 10.2 1.8 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DivIC PF04977.10 gi|549455884|ref|YP_008604643.1| - 1.2 8.7 8.1 11 5.5 0.0 3.8 4 0 0 4 4 4 0 Septum formation initiator DUF59 PF01883.14 gi|549455886|ref|YP_008604645.1| - 7.4e-17 61.1 0.9 1.1e-16 60.5 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF59 DUF3040 PF11239.3 gi|549455887|ref|YP_008604646.1| - 0.016 15.2 5.3 0.016 15.2 3.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) UPF0104 PF03706.8 gi|549455887|ref|YP_008604646.1| - 0.016 14.4 4.5 0.017 14.3 3.1 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) ATP_synt_I PF03899.10 gi|549455887|ref|YP_008604646.1| - 0.037 14.1 4.0 0.043 13.9 2.8 1.1 1 0 0 1 1 1 0 ATP synthase I chain Oxidored_q2 PF00420.19 gi|549455887|ref|YP_008604646.1| - 0.13 11.8 4.7 0.16 11.5 3.2 1.1 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AtpR PF12966.2 gi|549455887|ref|YP_008604646.1| - 0.2 11.8 3.4 0.17 12.0 1.4 1.5 1 1 0 1 1 1 0 N-ATPase, AtpR subunit TrbC PF04956.8 gi|549455887|ref|YP_008604646.1| - 0.3 11.1 3.4 0.38 10.7 2.4 1.2 1 0 0 1 1 1 0 TrbC/VIRB2 family Glucos_trans_II PF14264.1 gi|549455887|ref|YP_008604646.1| - 0.46 9.4 3.6 0.48 9.3 2.5 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII Phageshock_PspG PF09583.5 gi|549455887|ref|YP_008604646.1| - 0.46 10.5 7.2 0.58 10.2 5.0 1.2 1 0 0 1 1 1 0 Phage shock protein G (Phageshock_PspG) DUF202 PF02656.10 gi|549455887|ref|YP_008604646.1| - 2.1 8.6 5.9 3.1 8.1 4.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF1634 PF07843.6 gi|549455887|ref|YP_008604646.1| - 5.2 6.7 9.3 3.7 7.2 2.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1634) PSII_Ycf12 PF05969.6 gi|549455887|ref|YP_008604646.1| - 9.8 5.9 11.8 0.8 9.3 0.3 2.9 2 1 1 3 3 3 0 Photosystem II complex subunit Ycf12 MoCF_biosynth PF00994.19 gi|549455888|ref|YP_008604647.1| - 4.8e-38 129.8 0.0 6.5e-38 129.3 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain Acetyltransf_1 PF00583.19 gi|549455889|ref|YP_008604648.1| - 2.1e-10 40.4 0.3 3.8e-10 39.6 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|549455889|ref|YP_008604648.1| - 6.5e-10 38.6 0.1 1.2e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|549455889|ref|YP_008604648.1| - 2.4e-07 30.8 0.1 4.8e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|549455889|ref|YP_008604648.1| - 4.1e-07 30.1 0.3 4.1e-07 30.1 0.2 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|549455889|ref|YP_008604648.1| - 0.00088 19.1 0.0 0.0017 18.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|549455889|ref|YP_008604648.1| - 0.031 14.1 0.0 0.13 12.1 0.0 1.9 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|549455889|ref|YP_008604648.1| - 0.073 13.2 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|549455889|ref|YP_008604648.1| - 0.095 12.5 0.4 0.15 11.9 0.3 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CTP_transf_2 PF01467.21 gi|549455892|ref|YP_008604651.1| - 5.4e-12 46.0 0.0 7.2e-12 45.6 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase eRF1_2 PF03464.10 gi|549455893|ref|YP_008604652.1| - 7.6e-39 133.0 0.3 1.3e-38 132.3 0.2 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|549455893|ref|YP_008604652.1| - 3.4e-24 85.2 2.5 3.6e-23 81.9 0.3 3.1 3 1 0 3 3 3 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|549455893|ref|YP_008604652.1| - 1.2e-18 66.9 0.0 3.5e-18 65.4 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 1 SpoU_sub_bind PF08032.7 gi|549455893|ref|YP_008604652.1| - 8e-05 22.7 0.1 0.00054 20.0 0.1 2.4 2 0 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding Clr5 PF14420.1 gi|549455893|ref|YP_008604652.1| - 0.007 16.2 0.0 0.018 14.9 0.0 1.7 1 0 0 1 1 1 1 Clr5 domain Aconitase_B_N PF11791.3 gi|549455893|ref|YP_008604652.1| - 0.084 12.6 0.3 0.25 11.1 0.1 1.9 2 0 0 2 2 2 0 Aconitate B N-terminal domain Thioredoxin_3 PF13192.1 gi|549455894|ref|YP_008604653.1| - 0.00014 21.6 0.1 0.0002 21.1 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.6 gi|549455894|ref|YP_008604653.1| - 0.027 14.6 0.0 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD PEP-utilizers PF00391.18 gi|549455894|ref|YP_008604653.1| - 0.079 12.5 0.1 0.29 10.7 0.0 1.8 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain OTCace PF00185.19 gi|549455895|ref|YP_008604654.1| - 1.2e-52 177.9 0.0 2e-52 177.2 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|549455895|ref|YP_008604654.1| - 5.2e-48 162.3 0.0 7.7e-48 161.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HTH_32 PF13565.1 gi|549455896|ref|YP_008604655.1| - 0.035 14.9 1.5 0.29 11.9 0.8 2.0 1 1 1 2 2 2 0 Homeodomain-like domain HTH_45 PF14947.1 gi|549455898|ref|YP_008604657.1| - 0.0016 18.2 0.1 0.051 13.3 0.0 3.1 3 1 1 4 4 4 1 Winged helix-turn-helix TrmB PF01978.14 gi|549455898|ref|YP_008604657.1| - 0.0087 15.7 0.1 1.1 8.9 0.0 3.1 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|549455898|ref|YP_008604657.1| - 0.018 14.8 0.0 0.06 13.1 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|549455898|ref|YP_008604657.1| - 0.026 14.1 0.1 0.061 12.9 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.2 gi|549455898|ref|YP_008604657.1| - 0.034 13.8 0.0 0.14 11.8 0.0 2.0 2 0 0 2 2 2 0 MarR family Med31 PF05669.7 gi|549455898|ref|YP_008604657.1| - 0.062 13.0 0.2 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 SOH1 PrgH PF09480.5 gi|549455898|ref|YP_008604657.1| - 0.071 11.9 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Type III secretion system protein PrgH-EprH (PrgH) DED PF01335.16 gi|549455898|ref|YP_008604657.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Death effector domain HTH_5 PF01022.15 gi|549455898|ref|YP_008604657.1| - 0.13 12.0 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|549455898|ref|YP_008604657.1| - 0.17 12.0 2.6 3.9 7.6 0.0 3.1 2 1 1 3 3 3 0 Winged helix-turn helix DUF4096 PF13340.1 gi|549455898|ref|YP_008604657.1| - 0.35 10.7 0.1 0.35 10.7 0.1 2.2 3 0 0 3 3 3 0 Putative transposase of IS4/5 family (DUF4096) DUF650 PF04894.7 gi|549455899|ref|YP_008604658.1| - 5.1e-92 308.2 0.0 6.2e-92 307.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|549455899|ref|YP_008604658.1| - 3.7e-27 94.1 0.0 6.7e-27 93.2 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) TrkA_C PF02080.16 gi|549455900|ref|YP_008604659.1| - 2.2e-08 33.5 1.1 0.00058 19.4 0.1 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|549455900|ref|YP_008604659.1| - 1.1e-06 29.0 1.4 0.0067 16.8 0.1 2.4 2 0 0 2 2 2 2 PhoU domain DUF2122 PF09895.4 gi|549455901|ref|YP_008604660.1| - 9.1e-33 112.6 0.0 1.3e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) DNA_methylase PF00145.12 gi|549455902|ref|YP_008604661.1| - 7.9e-44 150.1 0.0 3.9e-28 98.5 0.0 2.0 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|549455902|ref|YP_008604661.1| - 0.0022 18.0 0.3 0.0035 17.3 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|549455902|ref|YP_008604661.1| - 0.0074 15.8 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TF_Zn_Ribbon PF08271.7 gi|549455903|ref|YP_008604662.1| - 1e-09 37.5 1.1 1.9e-09 36.6 0.8 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIE_alpha PF02002.12 gi|549455903|ref|YP_008604662.1| - 6.7e-09 35.1 0.6 9.8e-09 34.6 0.0 1.5 2 0 0 2 2 1 1 TFIIE alpha subunit zf-ribbon_3 PF13248.1 gi|549455903|ref|YP_008604662.1| - 7.4e-05 21.8 2.1 0.17 11.1 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|549455903|ref|YP_008604662.1| - 0.00015 21.0 1.1 0.00026 20.3 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|549455903|ref|YP_008604662.1| - 0.00056 19.4 0.2 0.9 9.2 0.0 2.5 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS zinc_ribbon_4 PF13717.1 gi|549455903|ref|YP_008604662.1| - 0.0019 17.8 1.9 0.0077 15.9 1.3 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|549455903|ref|YP_008604662.1| - 0.0019 17.7 2.0 0.0075 15.8 1.4 1.9 1 1 0 1 1 1 1 zinc-ribbon domain LcrV PF04792.7 gi|549455903|ref|YP_008604662.1| - 0.0032 16.5 0.0 0.0042 16.1 0.0 1.1 1 0 0 1 1 1 1 V antigen (LcrV) protein HypA PF01155.14 gi|549455903|ref|YP_008604662.1| - 0.0051 16.4 0.1 0.012 15.2 0.0 1.7 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|549455903|ref|YP_008604662.1| - 0.0055 16.6 0.3 3.6 7.6 0.0 2.4 2 0 0 2 2 2 1 Zinc ribbon domain RNA_pol_Rpc34 PF05158.7 gi|549455903|ref|YP_008604662.1| - 0.0084 15.3 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit zf-Di19 PF05605.7 gi|549455903|ref|YP_008604662.1| - 0.013 15.6 0.2 6.1 7.0 0.0 2.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Rad50_zn_hook PF04423.9 gi|549455903|ref|YP_008604662.1| - 0.015 14.7 1.1 0.073 12.5 0.1 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif Zn_Tnp_IS1595 PF12760.2 gi|549455903|ref|YP_008604662.1| - 0.019 14.7 3.6 2.2 8.1 0.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|549455903|ref|YP_008604662.1| - 0.02 14.6 1.0 0.043 13.6 0.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|549455903|ref|YP_008604662.1| - 0.021 14.4 1.7 0.085 12.5 1.2 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TrmB PF01978.14 gi|549455903|ref|YP_008604662.1| - 0.028 14.1 0.5 9.3 6.0 0.0 2.6 3 0 0 3 3 2 0 Sugar-specific transcriptional regulator TrmB zf-RING_3 PF14369.1 gi|549455903|ref|YP_008604662.1| - 0.03 14.3 0.8 3.1 7.8 0.0 2.4 2 0 0 2 2 2 0 zinc-finger IBR PF01485.16 gi|549455903|ref|YP_008604662.1| - 0.031 14.1 0.2 0.049 13.5 0.1 1.3 1 0 0 1 1 1 0 IBR domain Rrf2 PF02082.15 gi|549455903|ref|YP_008604662.1| - 0.034 14.2 0.0 0.1 12.7 0.0 1.8 1 1 1 2 2 2 0 Transcriptional regulator zf-HIT PF04438.11 gi|549455903|ref|YP_008604662.1| - 0.039 13.5 5.6 0.75 9.4 1.8 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-NADH-PPase PF09297.6 gi|549455903|ref|YP_008604662.1| - 0.064 12.7 1.3 5.8 6.5 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-Mss51 PF13824.1 gi|549455903|ref|YP_008604662.1| - 0.076 12.8 4.0 5.3 6.9 2.6 2.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Elf1 PF05129.8 gi|549455903|ref|YP_008604662.1| - 0.1 12.3 1.8 5 6.8 0.0 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DUF4224 PF13986.1 gi|549455903|ref|YP_008604662.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) Ribosomal_L37ae PF01780.14 gi|549455903|ref|YP_008604662.1| - 0.13 12.1 0.1 0.27 11.1 0.1 1.5 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-CSL PF05207.8 gi|549455903|ref|YP_008604662.1| - 0.13 11.8 4.8 0.75 9.3 3.3 2.1 1 1 1 2 2 2 0 CSL zinc finger Mut7-C PF01927.11 gi|549455903|ref|YP_008604662.1| - 0.14 12.1 0.2 5.9 6.8 0.0 2.5 1 1 1 2 2 2 0 Mut7-C RNAse domain zf-C2H2_6 PF13912.1 gi|549455903|ref|YP_008604662.1| - 0.14 12.1 3.1 3.2 7.8 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ISL3 PF14690.1 gi|549455903|ref|YP_008604662.1| - 0.15 12.1 4.9 5 7.2 0.1 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_4 PF13894.1 gi|549455903|ref|YP_008604662.1| - 0.15 12.4 1.4 14 6.2 0.3 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf-TFIIB PF13453.1 gi|549455903|ref|YP_008604662.1| - 0.17 11.1 1.7 3.9 6.7 0.2 2.5 2 1 0 2 2 2 0 Transcription factor zinc-finger YhfH PF14149.1 gi|549455903|ref|YP_008604662.1| - 0.17 11.6 0.6 4 7.3 0.1 2.5 2 0 0 2 2 2 0 YhfH-like protein DNA_ligase_ZBD PF03119.11 gi|549455903|ref|YP_008604662.1| - 0.41 10.4 5.8 5.7 6.7 0.3 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain ADK_lid PF05191.9 gi|549455903|ref|YP_008604662.1| - 0.44 10.2 3.9 23 4.7 0.1 3.1 3 0 0 3 3 3 0 Adenylate kinase, active site lid TFIIS_C PF01096.13 gi|549455903|ref|YP_008604662.1| - 0.48 10.1 5.4 13 5.5 0.3 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2 PF00096.21 gi|549455903|ref|YP_008604662.1| - 0.69 10.3 2.8 24 5.5 0.5 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|549455903|ref|YP_008604662.1| - 0.71 9.6 4.2 6 6.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 CpXC PF14353.1 gi|549455903|ref|YP_008604662.1| - 1.4 8.8 4.5 7.2 6.5 0.2 2.9 1 1 2 3 3 3 0 CpXC protein Rubredoxin PF00301.15 gi|549455903|ref|YP_008604662.1| - 1.8 8.4 4.6 1.4e+02 2.4 3.2 2.4 1 1 0 1 1 1 0 Rubredoxin DUF1610 PF07754.6 gi|549455903|ref|YP_008604662.1| - 1.9 8.6 11.0 1.9 8.6 0.3 2.8 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) Trm56 PF01994.11 gi|549455904|ref|YP_008604663.1| - 2.1e-46 156.5 0.0 2.6e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 MMR_HSR1 PF01926.18 gi|549455905|ref|YP_008604664.1| - 1.4e-15 57.2 0.0 2.6e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|549455905|ref|YP_008604664.1| - 3.7e-08 33.0 0.0 1.8e-05 24.3 0.0 3.0 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|549455905|ref|YP_008604664.1| - 3e-07 29.8 0.0 6.7e-07 28.7 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|549455905|ref|YP_008604664.1| - 1.1e-06 29.0 0.0 1.8e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|549455905|ref|YP_008604664.1| - 8.6e-05 22.4 0.0 0.0095 15.7 0.0 2.3 2 0 0 2 2 2 1 Dynamin family Arf PF00025.16 gi|549455905|ref|YP_008604664.1| - 0.0027 16.9 0.0 0.051 12.8 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family SRPRB PF09439.5 gi|549455905|ref|YP_008604664.1| - 0.0079 15.4 1.3 0.017 14.3 0.0 2.2 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit GTP-bdg_N PF13167.1 gi|549455905|ref|YP_008604664.1| - 0.069 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 GTP-binding GTPase N-terminal ABC_tran PF00005.22 gi|549455905|ref|YP_008604664.1| - 0.072 13.3 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter HTH_3 PF01381.17 gi|549455906|ref|YP_008604665.1| - 7.6e-12 44.8 1.0 1.1e-11 44.3 0.7 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|549455906|ref|YP_008604665.1| - 1.7e-11 44.1 1.5 2.7e-11 43.4 0.5 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|549455906|ref|YP_008604665.1| - 1e-10 41.4 0.1 1.6e-10 40.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|549455906|ref|YP_008604665.1| - 4.7e-08 32.5 0.5 8e-08 31.8 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|549455906|ref|YP_008604665.1| - 0.0028 17.4 0.1 0.0043 16.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|549455906|ref|YP_008604665.1| - 0.052 13.7 0.2 0.097 12.8 0.2 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain ZZ PF00569.12 gi|549455906|ref|YP_008604665.1| - 0.078 12.5 0.1 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Zinc finger, ZZ type zf-FCS PF06467.9 gi|549455906|ref|YP_008604665.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif AAA PF00004.24 gi|549455907|ref|YP_008604666.1| - 2.1e-44 150.9 0.0 4.8e-44 149.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|549455907|ref|YP_008604666.1| - 1.3e-06 28.4 0.0 3e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|549455907|ref|YP_008604666.1| - 5.6e-06 26.5 0.7 0.002 18.2 0.3 3.0 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|549455907|ref|YP_008604666.1| - 5.9e-06 25.4 0.1 1.4e-05 24.2 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|549455907|ref|YP_008604666.1| - 6.4e-06 26.2 1.8 7.4e-05 22.8 1.2 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|549455907|ref|YP_008604666.1| - 9.6e-05 22.1 2.3 0.00061 19.5 0.5 2.9 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|549455907|ref|YP_008604666.1| - 0.00034 20.3 0.9 0.00082 19.0 0.1 2.0 2 0 0 2 2 1 1 Part of AAA domain AAA_17 PF13207.1 gi|549455907|ref|YP_008604666.1| - 0.00065 20.5 0.2 0.0023 18.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|549455907|ref|YP_008604666.1| - 0.0011 18.7 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|549455907|ref|YP_008604666.1| - 0.0013 18.1 0.1 0.0052 16.2 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|549455907|ref|YP_008604666.1| - 0.0017 17.1 0.0 0.0031 16.2 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus AAA_3 PF07726.6 gi|549455907|ref|YP_008604666.1| - 0.0022 17.6 0.0 0.035 13.6 0.0 2.7 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|549455907|ref|YP_008604666.1| - 0.0037 16.3 0.0 0.0072 15.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|549455907|ref|YP_008604666.1| - 0.0052 16.6 0.0 0.0096 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|549455907|ref|YP_008604666.1| - 0.006 15.5 0.0 0.013 14.4 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|549455907|ref|YP_008604666.1| - 0.0071 16.3 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|549455907|ref|YP_008604666.1| - 0.011 14.8 0.1 0.029 13.5 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI bZIP_1 PF00170.16 gi|549455907|ref|YP_008604666.1| - 0.016 15.1 0.7 0.033 14.1 0.5 1.5 1 0 0 1 1 1 0 bZIP transcription factor AAA_18 PF13238.1 gi|549455907|ref|YP_008604666.1| - 0.028 14.7 0.0 0.064 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|549455907|ref|YP_008604666.1| - 0.035 14.2 0.0 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.7 gi|549455907|ref|YP_008604666.1| - 0.038 13.6 0.6 0.43 10.2 0.1 2.1 2 0 0 2 2 2 0 NACHT domain Sigma54_activat PF00158.21 gi|549455907|ref|YP_008604666.1| - 0.041 13.3 0.7 0.32 10.4 0.0 2.6 3 1 0 3 3 2 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|549455907|ref|YP_008604666.1| - 0.044 14.0 0.0 0.15 12.3 0.0 2.0 2 0 0 2 2 1 0 ABC transporter AAA_25 PF13481.1 gi|549455907|ref|YP_008604666.1| - 0.057 12.8 1.1 0.31 10.4 0.2 2.4 1 1 1 2 2 2 0 AAA domain PhoH PF02562.11 gi|549455907|ref|YP_008604666.1| - 0.061 12.5 0.1 0.13 11.4 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.1 gi|549455907|ref|YP_008604666.1| - 0.077 12.5 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|549455907|ref|YP_008604666.1| - 0.093 11.8 0.1 0.38 9.8 0.0 1.9 2 0 0 2 2 2 0 KaiC Torsin PF06309.6 gi|549455907|ref|YP_008604666.1| - 0.095 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_11 PF13086.1 gi|549455907|ref|YP_008604666.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|549455907|ref|YP_008604666.1| - 0.15 10.8 0.0 0.34 9.7 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain TSC22 PF01166.13 gi|549455907|ref|YP_008604666.1| - 0.37 10.8 2.7 0.55 10.2 0.6 2.1 2 0 0 2 2 2 0 TSC-22/dip/bun family TGT PF01702.13 gi|549455910|ref|YP_008604669.1| - 4e-50 170.3 0.0 5.1e-50 169.9 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Glyco_hydro_3 PF00933.16 gi|549455910|ref|YP_008604669.1| - 0.14 11.0 0.0 0.25 10.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 N terminal domain PAC2 PF09754.4 gi|549455911|ref|YP_008604670.1| - 1.9e-32 112.9 0.0 2.2e-32 112.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT_C2 PF14810.1 gi|549455912|ref|YP_008604671.1| - 1.9e-10 40.3 0.0 3.3e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|549455912|ref|YP_008604671.1| - 4.8e-06 26.2 1.0 9e-06 25.3 0.7 1.6 1 0 0 1 1 1 1 PUA domain FUR PF01475.14 gi|549455913|ref|YP_008604672.1| - 1.9e-20 72.9 0.1 2.4e-20 72.6 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.6 gi|549455913|ref|YP_008604672.1| - 2e-06 27.1 0.0 3.1e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_20 PF12840.2 gi|549455913|ref|YP_008604672.1| - 0.00027 20.6 0.0 0.00044 20.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|549455913|ref|YP_008604672.1| - 0.0026 17.3 0.1 0.0093 15.6 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|549455913|ref|YP_008604672.1| - 0.0038 17.3 0.0 0.008 16.2 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|549455913|ref|YP_008604672.1| - 0.0078 15.9 0.1 0.053 13.2 0.0 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|549455913|ref|YP_008604672.1| - 0.015 14.6 0.4 0.051 12.9 0.0 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|549455913|ref|YP_008604672.1| - 0.016 14.9 0.1 0.065 13.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF4423 PF14394.1 gi|549455913|ref|YP_008604672.1| - 0.017 14.7 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_32 PF13565.1 gi|549455913|ref|YP_008604672.1| - 0.033 14.9 0.0 0.061 14.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.7 gi|549455913|ref|YP_008604672.1| - 0.036 13.7 0.0 0.1 12.2 0.0 1.8 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|549455913|ref|YP_008604672.1| - 0.091 12.3 0.1 0.33 10.5 0.0 2.0 2 1 0 2 2 2 0 IclR helix-turn-helix domain HxlR PF01638.12 gi|549455913|ref|YP_008604672.1| - 0.12 11.9 0.0 0.5 10.0 0.0 2.0 2 1 0 2 2 2 0 HxlR-like helix-turn-helix HTH_23 PF13384.1 gi|549455913|ref|YP_008604672.1| - 0.14 11.8 0.0 0.47 10.1 0.0 1.9 1 1 1 2 2 2 0 Homeodomain-like domain Aminotran_5 PF00266.14 gi|549455917|ref|YP_008604676.1| - 1.4e-126 422.1 0.0 1.6e-126 422.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|549455917|ref|YP_008604676.1| - 0.0023 17.0 0.2 0.0043 16.1 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|549455917|ref|YP_008604676.1| - 0.029 12.6 0.0 0.06 11.6 0.0 1.4 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|549455917|ref|YP_008604676.1| - 0.084 11.5 0.0 0.14 10.8 0.0 1.4 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase AIRS_C PF02769.17 gi|549455918|ref|YP_008604677.1| - 4.5e-19 68.9 1.6 4.5e-19 68.9 1.1 1.5 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|549455918|ref|YP_008604677.1| - 1.4e-09 38.0 0.2 3.3e-09 36.8 0.2 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Meth_synt_2 PF01717.13 gi|549455919|ref|YP_008604678.1| - 8.4e-86 287.8 0.0 9.7e-86 287.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|549455919|ref|YP_008604678.1| - 6.7e-25 88.0 0.0 2.1e-18 66.6 0.0 2.0 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|549455919|ref|YP_008604678.1| - 0.0063 15.4 0.0 0.0093 14.9 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.7 gi|549455920|ref|YP_008604679.1| - 9.7e-47 159.7 0.0 1.7e-43 149.0 0.0 2.8 2 1 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|549455920|ref|YP_008604679.1| - 1.1e-24 87.0 0.0 1.4e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain TGS PF02824.16 gi|549455921|ref|YP_008604680.1| - 1.1e-23 82.8 0.1 1.8e-23 82.1 0.1 1.4 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|549455921|ref|YP_008604680.1| - 7.5e-20 71.0 0.0 4.5e-19 68.5 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|549455921|ref|YP_008604680.1| - 1.9e-08 33.7 0.0 1.2e-07 31.1 0.0 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|549455921|ref|YP_008604680.1| - 9.1e-05 22.9 0.0 0.00022 21.7 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|549455921|ref|YP_008604680.1| - 0.00013 21.5 0.0 0.0047 16.4 0.0 2.6 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.18 gi|549455921|ref|YP_008604680.1| - 0.013 15.3 0.1 2.1 8.1 0.0 3.1 2 1 0 3 3 3 0 Dynamin family Ras PF00071.17 gi|549455921|ref|YP_008604680.1| - 0.019 14.3 0.0 0.054 12.8 0.0 1.8 1 1 0 1 1 1 0 Ras family AAA_29 PF13555.1 gi|549455921|ref|YP_008604680.1| - 0.02 14.4 0.1 0.049 13.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|549455921|ref|YP_008604680.1| - 0.064 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|549455921|ref|YP_008604680.1| - 0.12 11.2 0.0 0.8 8.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|549455921|ref|YP_008604680.1| - 0.12 13.1 0.3 1 10.2 0.0 2.6 2 1 0 2 2 2 0 AAA domain YchF-GTPase_C PF06071.8 gi|549455921|ref|YP_008604680.1| - 0.17 11.7 0.1 11 5.9 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) AAA_23 PF13476.1 gi|549455921|ref|YP_008604680.1| - 0.83 9.9 3.0 2.5 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain CN_hydrolase PF00795.17 gi|549455923|ref|YP_008604682.1| - 7.8e-17 61.2 0.0 5.9e-15 55.0 0.0 2.4 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase NUDIX PF00293.23 gi|549455924|ref|YP_008604683.1| - 3.3e-17 62.3 0.2 4.1e-17 62.0 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain PadR PF03551.9 gi|549455925|ref|YP_008604684.1| - 0.029 14.1 0.0 5.7 6.7 0.0 2.3 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family NusG PF02357.14 gi|549455926|ref|YP_008604685.1| - 0.11 12.8 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcription termination factor nusG Exo5 PF09810.4 gi|549455927|ref|YP_008604686.1| - 0.00055 19.2 0.1 0.00061 19.1 0.1 1.1 1 0 0 1 1 1 1 Exonuclease V - a 5' deoxyribonuclease Cas_Cas4 PF01930.12 gi|549455927|ref|YP_008604686.1| - 0.031 14.2 0.2 0.046 13.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF83 ABC_tran PF00005.22 gi|549455928|ref|YP_008604687.1| - 3.4e-35 121.3 0.0 5e-35 120.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549455928|ref|YP_008604687.1| - 3.5e-13 50.1 0.4 7.6e-07 29.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|549455928|ref|YP_008604687.1| - 9.1e-05 22.4 0.0 0.00028 20.9 0.0 1.8 2 0 0 2 2 2 1 TOBE domain AAA_15 PF13175.1 gi|549455928|ref|YP_008604687.1| - 0.00025 20.2 0.0 0.025 13.6 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|549455928|ref|YP_008604687.1| - 0.00034 19.9 0.0 0.47 9.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.5 gi|549455928|ref|YP_008604687.1| - 0.00061 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 TOBE domain AAA_29 PF13555.1 gi|549455928|ref|YP_008604687.1| - 0.0026 17.2 0.0 0.0082 15.6 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|549455928|ref|YP_008604687.1| - 0.0078 15.9 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|549455928|ref|YP_008604687.1| - 0.01 15.7 0.0 0.044 13.6 0.0 2.1 2 1 1 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|549455928|ref|YP_008604687.1| - 0.017 15.4 0.6 0.042 14.1 0.4 1.8 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|549455928|ref|YP_008604687.1| - 0.017 14.8 0.0 0.057 13.1 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase AAA_22 PF13401.1 gi|549455928|ref|YP_008604687.1| - 0.017 15.2 0.4 0.081 13.0 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|549455928|ref|YP_008604687.1| - 0.019 14.3 0.0 0.23 10.8 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|549455928|ref|YP_008604687.1| - 0.03 14.2 0.2 0.064 13.2 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|549455928|ref|YP_008604687.1| - 0.043 12.7 0.0 0.088 11.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|549455928|ref|YP_008604687.1| - 0.07 12.3 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KaiC PF06745.8 gi|549455928|ref|YP_008604687.1| - 0.072 12.2 0.0 9.7 5.2 0.0 2.3 2 0 0 2 2 2 0 KaiC AAA_17 PF13207.1 gi|549455928|ref|YP_008604687.1| - 0.1 13.3 0.7 0.22 12.3 0.5 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|549455928|ref|YP_008604687.1| - 0.13 12.4 0.0 0.56 10.4 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|549455928|ref|YP_008604687.1| - 0.15 11.6 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.17 gi|549455928|ref|YP_008604687.1| - 0.18 10.6 0.0 0.29 9.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Ribonuc_red_lgC PF02867.10 gi|549455929|ref|YP_008604688.1| - 4.8e-122 408.2 0.0 7e-89 298.8 0.0 2.3 2 1 0 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|549455929|ref|YP_008604688.1| - 3.8e-14 52.2 0.3 9.2e-14 51.0 0.2 1.6 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Thy1 PF02511.10 gi|549455930|ref|YP_008604689.1| - 1.3e-60 203.9 0.2 1.8e-60 203.5 0.1 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Glycos_transf_1 PF00534.15 gi|549455931|ref|YP_008604690.1| - 2.9e-41 140.7 0.0 6.2e-41 139.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|549455931|ref|YP_008604690.1| - 1.1e-20 74.1 0.0 1.9e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|549455931|ref|YP_008604690.1| - 3.9e-16 59.4 0.0 7.8e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|549455931|ref|YP_008604690.1| - 3.8e-15 56.3 0.0 1.2e-14 54.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|549455931|ref|YP_008604690.1| - 9e-15 54.7 0.0 1.7e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|549455931|ref|YP_008604690.1| - 1.2e-05 25.1 0.0 5.8e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like Oxidored_nitro PF00148.14 gi|549455931|ref|YP_008604690.1| - 0.00087 18.0 0.0 0.0013 17.4 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase PIGA PF08288.7 gi|549455931|ref|YP_008604690.1| - 0.013 15.8 0.1 0.029 14.7 0.0 1.6 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) Glyco_transf_5 PF08323.6 gi|549455931|ref|YP_008604690.1| - 0.033 13.6 0.2 1.5 8.2 0.0 2.3 2 0 0 2 2 2 0 Starch synthase catalytic domain YcfA PF07927.7 gi|549455931|ref|YP_008604690.1| - 0.24 11.3 2.4 8.6 6.3 0.0 4.0 3 1 2 5 5 5 0 YcfA-like protein GHMP_kinases_N PF00288.21 gi|549455932|ref|YP_008604691.1| - 2.2e-15 56.4 3.1 1.3e-14 53.9 1.1 2.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|549455932|ref|YP_008604691.1| - 6.8e-10 39.0 1.7 1.1e-09 38.4 0.3 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal Cys_Met_Meta_PP PF01053.15 gi|549455933|ref|YP_008604692.1| - 4.1e-98 328.1 0.0 5.1e-98 327.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pribosyltran PF00156.22 gi|549455936|ref|YP_008604695.1| - 1.6e-22 79.5 0.4 2.4e-22 78.9 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|549455936|ref|YP_008604695.1| - 0.049 12.8 0.0 0.081 12.1 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Ribosomal_S17e PF00833.13 gi|549455937|ref|YP_008604696.1| - 1.5e-23 82.8 0.8 1.7e-23 82.6 0.6 1.0 1 0 0 1 1 1 1 Ribosomal S17 Sld5 PF05916.6 gi|549455937|ref|YP_008604696.1| - 0.094 13.0 0.1 0.1 12.9 0.1 1.2 1 0 0 1 1 1 0 GINS complex protein Cpn60_TCP1 PF00118.19 gi|549455938|ref|YP_008604697.1| - 5.1e-174 579.4 5.2 5.8e-174 579.2 3.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family tRNA-synt_1b PF00579.20 gi|549455939|ref|YP_008604698.1| - 9.7e-46 156.2 0.0 4.3e-44 150.8 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) PAPS_reduct PF01507.14 gi|549455940|ref|YP_008604699.1| - 1.1e-29 103.5 0.0 1.6e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|549455940|ref|YP_008604699.1| - 0.00023 20.6 0.0 0.00038 19.8 0.0 1.3 1 0 0 1 1 1 1 ATP-binding region NAD_synthase PF02540.12 gi|549455940|ref|YP_008604699.1| - 0.00097 18.1 0.1 0.0015 17.4 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.15 gi|549455940|ref|YP_008604699.1| - 0.03 13.8 0.0 0.048 13.1 0.0 1.2 1 0 0 1 1 1 0 PP-loop family QueC PF06508.8 gi|549455940|ref|YP_008604699.1| - 0.037 13.3 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF308 PF03729.8 gi|549455941|ref|YP_008604700.1| - 0.0052 16.7 7.8 0.097 12.6 1.3 2.1 2 0 0 2 2 2 2 Short repeat of unknown function (DUF308) DUF4501 PF14946.1 gi|549455941|ref|YP_008604700.1| - 0.86 9.0 5.9 2.4 7.6 1.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4501) DUF4225 PF13988.1 gi|549455941|ref|YP_008604700.1| - 3.8 6.9 6.1 0.45 9.9 0.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4225) DUF350 PF03994.9 gi|549455941|ref|YP_008604700.1| - 5.5 6.8 10.8 2.4 7.9 0.4 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) DUF2613 PF11021.3 gi|549455941|ref|YP_008604700.1| - 5.6 6.7 5.8 4 7.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) DpnD-PcfM PF14207.1 gi|549455942|ref|YP_008604701.1| - 0.0015 18.2 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 DpnD/PcfM-like protein PaaB PF06243.6 gi|549455942|ref|YP_008604701.1| - 0.017 15.2 0.0 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 Phenylacetic acid degradation B CIDE-N PF02017.10 gi|549455942|ref|YP_008604701.1| - 0.057 13.1 0.0 0.062 13.0 0.0 1.1 1 0 0 1 1 1 0 CIDE-N domain BRCA2 PF00634.13 gi|549455942|ref|YP_008604701.1| - 0.15 11.4 0.2 0.23 10.7 0.1 1.3 1 0 0 1 1 1 0 BRCA2 repeat UbiD PF01977.11 gi|549455944|ref|YP_008604703.1| - 6.9e-97 324.4 0.1 8.4e-97 324.1 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NUDIX PF00293.23 gi|549455945|ref|YP_008604704.1| - 3.4e-24 85.0 0.1 4e-24 84.7 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain Peptidase_M29 PF02073.10 gi|549455946|ref|YP_008604705.1| - 1.6e-109 366.3 0.0 1.8e-109 366.1 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) PhoU PF01895.14 gi|549455947|ref|YP_008604706.1| - 6.1e-15 55.4 2.3 5.4e-12 45.9 0.2 2.6 2 1 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|549455947|ref|YP_008604706.1| - 2.2e-10 40.0 0.0 4.9e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE eIF-5a PF01287.15 gi|549455948|ref|YP_008604707.1| - 4e-15 55.5 0.1 6.6e-15 54.8 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|549455948|ref|YP_008604707.1| - 5e-06 26.2 0.0 1.4e-05 24.8 0.0 1.7 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|549455948|ref|YP_008604707.1| - 0.0041 16.7 0.1 0.0079 15.8 0.1 1.5 1 0 0 1 1 1 1 KOW motif EFP PF01132.15 gi|549455948|ref|YP_008604707.1| - 0.022 14.3 0.1 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain ATP_bind_3 PF01171.15 gi|549455949|ref|YP_008604708.1| - 1.3e-11 44.3 0.0 4e-11 42.7 0.0 1.7 1 1 0 1 1 1 1 PP-loop family RecR PF02132.10 gi|549455949|ref|YP_008604708.1| - 0.00036 19.8 6.3 0.0016 17.7 0.5 3.3 3 0 0 3 3 3 1 RecR protein tRNA_Me_trans PF03054.11 gi|549455949|ref|YP_008604708.1| - 0.0039 15.8 0.0 0.0059 15.2 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|549455949|ref|YP_008604708.1| - 0.0053 16.2 0.1 0.0082 15.6 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|549455949|ref|YP_008604708.1| - 0.092 11.6 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 NAD synthase Cas_Csx8 PF09657.5 gi|549455949|ref|YP_008604708.1| - 0.11 11.2 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein Csx8 (Cas_Csx8) PAPS_reduct PF01507.14 gi|549455949|ref|YP_008604708.1| - 0.17 11.7 0.0 0.86 9.3 0.0 1.9 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|549455949|ref|YP_008604708.1| - 0.6 9.3 0.0 0.6 9.3 0.0 2.0 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC OrfB_Zn_ribbon PF07282.6 gi|549455949|ref|YP_008604708.1| - 1.5 8.5 5.9 4.8 6.9 0.0 3.4 3 1 0 3 3 3 0 Putative transposase DNA-binding domain ThiS PF02597.15 gi|549455950|ref|YP_008604709.1| - 0.018 15.4 0.5 0.021 15.2 0.3 1.1 1 0 0 1 1 1 0 ThiS family Ub-Mut7C PF14451.1 gi|549455950|ref|YP_008604709.1| - 0.14 11.7 0.1 1.2 8.7 0.1 1.9 1 1 1 2 2 2 0 Mut7-C ubiquitin DUF521 PF04412.8 gi|549455951|ref|YP_008604710.1| - 9.2e-127 422.8 0.0 1e-126 422.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.11 gi|549455952|ref|YP_008604711.1| - 1.1e-27 95.4 0.3 1.5e-27 95.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF126 Thymidylate_kin PF02223.12 gi|549455953|ref|YP_008604712.1| - 1.6e-33 115.6 0.0 1.8e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.14 gi|549455953|ref|YP_008604712.1| - 2.4e-05 24.2 0.0 3.4e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.1 gi|549455953|ref|YP_008604712.1| - 0.00032 21.0 0.3 0.0079 16.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|549455953|ref|YP_008604712.1| - 0.043 13.6 0.2 0.14 12.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain SKI PF01202.17 gi|549455953|ref|YP_008604712.1| - 0.092 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Shikimate kinase ROK PF00480.15 gi|549455954|ref|YP_008604713.1| - 8.7e-28 97.3 0.0 1.2e-27 96.9 0.0 1.2 1 0 0 1 1 1 1 ROK family AAA_10 PF12846.2 gi|549455955|ref|YP_008604714.1| - 1.7e-22 80.2 0.0 6.1e-22 78.4 0.0 1.8 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|549455955|ref|YP_008604714.1| - 3.9e-15 56.3 0.0 5.4e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|549455955|ref|YP_008604714.1| - 1.3e-07 30.3 0.0 6e-05 21.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|549455955|ref|YP_008604714.1| - 4.5e-05 22.2 0.0 0.00041 19.0 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|549455955|ref|YP_008604714.1| - 8.3e-05 22.1 0.1 0.00026 20.5 0.0 1.8 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|549455955|ref|YP_008604714.1| - 0.00083 18.8 0.1 0.003 16.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain Zot PF05707.7 gi|549455955|ref|YP_008604714.1| - 0.0031 16.9 0.1 0.0079 15.6 0.0 1.6 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|549455955|ref|YP_008604714.1| - 0.0047 17.0 0.4 4.3 7.4 0.4 2.3 2 0 0 2 2 2 2 AAA domain IPT PF01745.11 gi|549455955|ref|YP_008604714.1| - 0.021 13.9 0.4 0.043 12.9 0.3 1.4 1 0 0 1 1 1 0 Isopentenyl transferase DEAD_2 PF06733.10 gi|549455955|ref|YP_008604714.1| - 0.084 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 DEAD_2 CbiA PF01656.18 gi|549455955|ref|YP_008604714.1| - 0.096 12.0 0.1 0.23 10.8 0.1 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Miro PF08477.8 gi|549455955|ref|YP_008604714.1| - 0.1 13.0 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|549455955|ref|YP_008604714.1| - 0.11 12.2 0.1 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|549455955|ref|YP_008604714.1| - 0.14 11.0 0.5 0.21 10.4 0.4 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.24 gi|549455955|ref|YP_008604714.1| - 0.15 11.5 0.0 18 4.7 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase cobW PF02492.14 gi|549455955|ref|YP_008604714.1| - 0.22 10.9 0.1 0.37 10.2 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|549455956|ref|YP_008604715.1| - 1.1e-09 38.6 0.2 5.5e-08 33.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|549455956|ref|YP_008604715.1| - 8.3e-09 36.3 0.0 2.4e-08 34.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|549455956|ref|YP_008604715.1| - 1.6e-07 31.3 0.0 6.6e-07 29.3 0.0 1.8 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.24 gi|549455956|ref|YP_008604715.1| - 1.8e-05 24.9 0.0 3e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|549455956|ref|YP_008604715.1| - 0.00014 21.7 0.2 0.0024 17.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|549455956|ref|YP_008604715.1| - 0.0021 18.0 0.6 0.006 16.5 0.1 2.0 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|549455956|ref|YP_008604715.1| - 0.0049 15.9 0.1 0.0079 15.2 0.1 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|549455956|ref|YP_008604715.1| - 0.0065 16.1 1.3 0.015 14.9 0.9 1.8 1 1 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|549455956|ref|YP_008604715.1| - 0.026 13.5 0.0 0.031 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|549455956|ref|YP_008604715.1| - 0.031 14.2 0.1 0.083 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|549455956|ref|YP_008604715.1| - 0.041 14.0 0.0 0.071 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Cytidylate_kin2 PF13189.1 gi|549455956|ref|YP_008604715.1| - 0.092 12.6 0.0 0.21 11.5 0.0 1.6 2 0 0 2 2 2 0 Cytidylate kinase-like family Zeta_toxin PF06414.7 gi|549455956|ref|YP_008604715.1| - 0.092 11.8 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.9 gi|549455956|ref|YP_008604715.1| - 0.12 12.0 0.1 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) CPT PF07931.7 gi|549455956|ref|YP_008604715.1| - 0.14 11.7 0.0 16 5.0 0.0 2.2 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Toprim_4 PF13662.1 gi|549455957|ref|YP_008604716.1| - 1.2e-08 34.8 2.0 2.6e-08 33.7 0.0 2.5 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|549455957|ref|YP_008604716.1| - 1.8e-06 27.8 0.0 7.4e-06 25.8 0.0 2.1 2 0 0 2 2 2 1 Toprim domain CARD PF00619.16 gi|549455957|ref|YP_008604716.1| - 0.0075 16.0 0.6 0.021 14.6 0.4 1.7 1 0 0 1 1 1 1 Caspase recruitment domain Toprim_2 PF13155.1 gi|549455957|ref|YP_008604716.1| - 0.023 14.9 0.0 0.077 13.3 0.0 1.9 2 0 0 2 2 2 0 Toprim-like Phage_min_cap2 PF06152.6 gi|549455957|ref|YP_008604716.1| - 0.068 12.1 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Phage minor capsid protein 2 DUF4259 PF14078.1 gi|549455957|ref|YP_008604716.1| - 1.2 9.6 4.1 1.4 9.4 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4259) DNA_pol_B PF00136.16 gi|549455958|ref|YP_008604717.1| - 2.7e-96 323.1 0.0 3.6e-96 322.7 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|549455958|ref|YP_008604717.1| - 3.8e-35 121.2 0.0 1.7e-33 115.8 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|549455958|ref|YP_008604717.1| - 3.4e-10 39.9 0.0 6.4e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|549455958|ref|YP_008604717.1| - 1.9e-05 24.2 0.0 3.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.8 gi|549455958|ref|YP_008604717.1| - 0.044 12.4 1.5 0.073 11.7 0.1 2.0 3 0 0 3 3 3 0 DNA polymerase type B, organellar and viral AP_endonuc_2 PF01261.19 gi|549455960|ref|YP_008604719.1| - 1.7e-21 76.4 0.0 2.3e-21 76.0 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|549455960|ref|YP_008604719.1| - 5.9e-05 22.2 0.0 8.6e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 UV-endonuclease UvdE PNP_UDP_1 PF01048.15 gi|549455961|ref|YP_008604720.1| - 2.9e-45 154.0 2.2 3.6e-45 153.7 1.6 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily PfkB PF00294.19 gi|549455962|ref|YP_008604721.1| - 1.4e-29 103.2 0.0 1.9e-29 102.7 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Thiolase_N PF00108.18 gi|549455963|ref|YP_008604722.1| - 5.3e-67 225.5 0.0 6.6e-67 225.2 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|549455963|ref|YP_008604722.1| - 2e-42 143.4 0.0 4.7e-42 142.3 0.0 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain FAE1_CUT1_RppA PF08392.7 gi|549455963|ref|YP_008604722.1| - 0.054 12.5 0.1 0.08 11.9 0.1 1.2 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein ketoacyl-synt PF00109.21 gi|549455963|ref|YP_008604722.1| - 0.13 11.7 3.2 0.27 10.6 1.6 1.9 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain Radical_SAM PF04055.16 gi|549455964|ref|YP_008604723.1| - 2.9e-24 86.1 0.0 1.1e-23 84.2 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|549455964|ref|YP_008604723.1| - 2.5e-12 46.7 1.8 2.5e-12 46.7 1.2 1.7 2 0 0 2 2 2 1 B12 binding domain DUF165 PF02592.10 gi|549455965|ref|YP_008604724.1| - 7.4e-49 165.6 8.6 7.4e-49 165.6 6.0 1.5 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 CTP-dep_RFKase PF01982.11 gi|549455966|ref|YP_008604725.1| - 1e-34 118.7 0.0 1.1e-34 118.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 SirB PF04247.7 gi|549455967|ref|YP_008604726.1| - 0.042 13.5 2.8 0.13 12.0 0.3 2.1 2 0 0 2 2 2 0 Invasion gene expression up-regulator, SirB DUF4149 PF13664.1 gi|549455967|ref|YP_008604726.1| - 0.091 12.8 4.2 0.98 9.5 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) Phage_holin_3 PF05106.7 gi|549455967|ref|YP_008604726.1| - 0.34 10.9 3.6 0.25 11.3 1.3 1.7 1 1 1 2 2 2 0 Phage holin family (Lysis protein S) Amidohydro_1 PF01979.15 gi|549455968|ref|YP_008604727.1| - 0.0036 17.0 0.0 0.0077 15.9 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|549455968|ref|YP_008604727.1| - 0.018 14.8 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 Amidohydrolase GDC-P PF02347.11 gi|549455971|ref|YP_008604730.1| - 1.3e-06 27.4 0.0 2.1e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|549455971|ref|YP_008604730.1| - 2e-05 23.5 0.0 4e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|549455971|ref|YP_008604730.1| - 0.00059 18.9 0.0 0.0011 18.0 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class I and II Bac_luciferase PF00296.15 gi|549455971|ref|YP_008604730.1| - 0.025 13.7 1.1 2 7.4 0.1 2.2 2 0 0 2 2 2 0 Luciferase-like monooxygenase Beta_elim_lyase PF01212.16 gi|549455971|ref|YP_008604730.1| - 0.095 11.8 0.1 0.23 10.5 0.0 1.6 2 0 0 2 2 2 0 Beta-eliminating lyase GDC-P PF02347.11 gi|549455972|ref|YP_008604731.1| - 9.7e-113 377.0 0.0 1.1e-112 376.8 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein AhpC-TSA PF00578.16 gi|549455973|ref|YP_008604732.1| - 1.1e-39 134.9 0.1 1.3e-39 134.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|549455973|ref|YP_008604732.1| - 9.8e-24 83.5 0.0 1.1e-23 83.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|549455973|ref|YP_008604732.1| - 0.00039 20.3 0.0 0.016 15.1 0.0 2.1 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.9 gi|549455973|ref|YP_008604732.1| - 0.0094 15.5 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.1 gi|549455973|ref|YP_008604732.1| - 0.081 13.0 0.2 0.16 12.0 0.1 1.7 1 1 0 1 1 1 0 Thioredoxin-like DUF899 PF05988.7 gi|549455973|ref|YP_008604732.1| - 0.13 11.6 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Dsl1_C PF11989.3 gi|549455974|ref|YP_008604733.1| - 0.016 14.4 0.6 0.016 14.4 0.4 1.0 1 0 0 1 1 1 0 Retrograde transport protein Dsl1 C terminal FliT PF05400.8 gi|549455974|ref|YP_008604733.1| - 0.18 12.2 1.7 0.22 11.9 1.2 1.1 1 0 0 1 1 1 0 Flagellar protein FliT POR_N PF01855.14 gi|549455975|ref|YP_008604734.1| - 4.9e-60 202.8 0.0 7.5e-60 202.3 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|549455975|ref|YP_008604734.1| - 5.6e-35 120.7 0.0 1.1e-34 119.8 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|549455975|ref|YP_008604734.1| - 1.5e-10 41.0 0.0 5.3e-09 36.0 0.0 2.6 3 0 0 3 3 3 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|549455975|ref|YP_008604734.1| - 0.017 14.6 0.0 0.037 13.5 0.0 1.6 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|549455976|ref|YP_008604735.1| - 2.4e-31 108.3 0.1 4.1e-31 107.6 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|549455976|ref|YP_008604735.1| - 2e-13 50.0 0.4 1.5e-12 47.2 0.3 2.2 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF1850 PF08905.6 gi|549455977|ref|YP_008604736.1| - 1e-05 25.2 0.0 1.3e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) DUF4388 PF14332.1 gi|549455977|ref|YP_008604736.1| - 0.079 12.8 0.0 0.15 11.9 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4388) Aminotran_3 PF00202.16 gi|549455978|ref|YP_008604737.1| - 5.8e-61 206.2 0.0 8.4e-61 205.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III ADH_zinc_N PF00107.21 gi|549455978|ref|YP_008604737.1| - 0.0025 17.3 0.0 0.083 12.4 0.0 2.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Aminotran_1_2 PF00155.16 gi|549455978|ref|YP_008604737.1| - 0.072 12.0 0.0 0.15 11.0 0.0 1.8 1 1 0 1 1 1 0 Aminotransferase class I and II DctM PF06808.7 gi|549455979|ref|YP_008604738.1| - 1.6e-71 241.1 65.7 2.2e-51 174.7 14.0 3.5 3 1 1 4 4 4 3 DctM-like transporters NMT1 PF09084.6 gi|549455980|ref|YP_008604739.1| - 1.3e-08 34.7 0.1 2e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|549455980|ref|YP_008604739.1| - 1.9e-05 24.1 0.9 6.5e-05 22.4 0.6 2.0 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OsmC PF02566.14 gi|549455981|ref|YP_008604740.1| - 0.013 15.7 0.1 0.022 14.9 0.0 1.4 1 1 0 1 1 1 0 OsmC-like protein AIM24 PF01987.12 gi|549455982|ref|YP_008604741.1| - 1e-50 172.2 1.1 1.1e-50 172.0 0.8 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 PRC PF05239.11 gi|549455982|ref|YP_008604741.1| - 0.23 11.3 2.9 0.59 10.0 1.1 2.6 2 1 0 2 2 2 0 PRC-barrel domain MttA_Hcf106 PF02416.11 gi|549455983|ref|YP_008604742.1| - 8.9e-16 56.7 0.3 1.1e-15 56.4 0.2 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family Sperm_Ag_HE2 PF05324.8 gi|549455983|ref|YP_008604742.1| - 0.049 13.5 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 Sperm antigen HE2 OppC_N PF12911.2 gi|549455983|ref|YP_008604742.1| - 0.21 10.9 0.9 0.27 10.6 0.7 1.2 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Gln-synt_C PF00120.19 gi|549455984|ref|YP_008604743.1| - 1.6e-87 292.9 0.0 2e-87 292.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|549455984|ref|YP_008604743.1| - 1e-12 47.4 0.0 2e-12 46.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DEAD_assoc PF08494.6 gi|549455985|ref|YP_008604744.1| - 8.2e-60 201.7 0.1 2e-59 200.4 0.1 1.7 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|549455985|ref|YP_008604744.1| - 3.9e-29 101.2 0.0 4.8e-28 97.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|549455985|ref|YP_008604744.1| - 1.5e-14 53.5 0.0 5.3e-14 51.8 0.0 1.9 2 0 0 2 2 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|549455985|ref|YP_008604744.1| - 4.3e-05 23.4 0.0 0.00014 21.7 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Ubiq_cyt_C_chap PF03981.7 gi|549455985|ref|YP_008604744.1| - 0.00097 19.0 0.4 0.0075 16.1 0.0 2.4 2 0 0 2 2 2 1 Ubiquinol-cytochrome C chaperone DUF1269 PF06897.7 gi|549455985|ref|YP_008604744.1| - 0.0012 18.8 0.0 0.26 11.3 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1269) SNF2_N PF00176.18 gi|549455985|ref|YP_008604744.1| - 0.0034 16.2 0.0 0.01 14.6 0.0 1.7 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|549455985|ref|YP_008604744.1| - 0.022 14.4 0.1 1.9 8.3 0.0 2.8 2 0 0 2 2 2 0 Part of AAA domain AAA_22 PF13401.1 gi|549455985|ref|YP_008604744.1| - 0.027 14.6 1.2 1.7 8.8 0.1 3.5 2 2 0 3 3 3 0 AAA domain DUF4130 PF13566.1 gi|549455985|ref|YP_008604744.1| - 0.034 13.7 0.0 0.09 12.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4130 UvrD-helicase PF00580.16 gi|549455985|ref|YP_008604744.1| - 0.048 12.9 0.9 11 5.1 0.0 2.8 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain PhoH PF02562.11 gi|549455985|ref|YP_008604744.1| - 0.09 11.9 0.0 0.19 10.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DivIC PF04977.10 gi|549455986|ref|YP_008604745.1| - 0.0016 17.9 1.4 0.0027 17.1 0.5 1.8 1 1 0 1 1 1 1 Septum formation initiator Filament PF00038.16 gi|549455986|ref|YP_008604745.1| - 0.0025 17.3 0.5 0.0037 16.7 0.4 1.1 1 0 0 1 1 1 1 Intermediate filament protein HCMV_UL139 PF12507.3 gi|549455986|ref|YP_008604745.1| - 0.003 17.7 0.1 0.0054 16.8 0.0 1.4 1 0 0 1 1 1 1 Human Cytomegalovirus UL139 protein ADIP PF11559.3 gi|549455986|ref|YP_008604745.1| - 0.003 17.4 0.8 0.0043 16.9 0.6 1.1 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding WEMBL PF05701.6 gi|549455986|ref|YP_008604745.1| - 0.0034 15.8 0.5 0.0045 15.5 0.3 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light YidC_periplas PF14849.1 gi|549455986|ref|YP_008604745.1| - 0.0037 17.1 0.1 0.0049 16.7 0.1 1.3 1 0 0 1 1 1 1 YidC periplasmic domain MAD PF05557.8 gi|549455986|ref|YP_008604745.1| - 0.006 14.7 0.3 0.008 14.3 0.2 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein TMF_DNA_bd PF12329.3 gi|549455986|ref|YP_008604745.1| - 0.014 15.2 2.9 0.025 14.3 2.0 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Prefoldin PF02996.12 gi|549455986|ref|YP_008604745.1| - 0.015 14.9 0.4 0.038 13.6 0.0 1.9 3 0 0 3 3 1 0 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|549455986|ref|YP_008604745.1| - 0.015 15.1 2.4 0.029 14.2 1.5 1.5 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 UPF0184 PF03670.8 gi|549455986|ref|YP_008604745.1| - 0.022 14.9 0.1 0.044 13.9 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) BicD PF09730.4 gi|549455986|ref|YP_008604745.1| - 0.026 12.8 0.6 0.037 12.3 0.4 1.1 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D Tropomyosin_1 PF12718.2 gi|549455986|ref|YP_008604745.1| - 0.027 14.3 0.9 0.042 13.7 0.6 1.2 1 0 0 1 1 1 0 Tropomyosin like DUF904 PF06005.7 gi|549455986|ref|YP_008604745.1| - 0.028 14.7 3.3 0.049 13.9 2.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF904) PspA_IM30 PF04012.7 gi|549455986|ref|YP_008604745.1| - 0.037 13.3 0.1 0.055 12.8 0.1 1.2 1 0 0 1 1 1 0 PspA/IM30 family APG6 PF04111.7 gi|549455986|ref|YP_008604745.1| - 0.041 12.9 0.1 0.06 12.3 0.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 FlaC_arch PF05377.6 gi|549455986|ref|YP_008604745.1| - 0.043 13.6 2.5 0.044 13.6 0.4 1.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) HALZ PF02183.13 gi|549455986|ref|YP_008604745.1| - 0.044 13.5 2.0 0.086 12.5 1.4 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper Taxilin PF09728.4 gi|549455986|ref|YP_008604745.1| - 0.044 12.8 0.1 0.065 12.3 0.1 1.2 1 0 0 1 1 1 0 Myosin-like coiled-coil protein CALCOCO1 PF07888.6 gi|549455986|ref|YP_008604745.1| - 0.052 11.8 0.1 0.077 11.2 0.0 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Spc24 PF08286.6 gi|549455986|ref|YP_008604745.1| - 0.052 13.2 0.1 0.097 12.3 0.1 1.4 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 DUF812 PF05667.6 gi|549455986|ref|YP_008604745.1| - 0.059 11.8 0.4 0.085 11.3 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Cortex-I_coil PF09304.5 gi|549455986|ref|YP_008604745.1| - 0.067 13.2 1.4 0.12 12.4 1.0 1.3 1 0 0 1 1 1 0 Cortexillin I, coiled coil HR1 PF02185.11 gi|549455986|ref|YP_008604745.1| - 0.07 12.8 3.9 1.8 8.3 0.7 2.4 1 1 1 2 2 2 0 Hr1 repeat Prefoldin_2 PF01920.15 gi|549455986|ref|YP_008604745.1| - 0.077 12.7 1.8 0.12 12.1 0.3 1.7 1 1 1 2 2 2 0 Prefoldin subunit TBPIP PF07106.8 gi|549455986|ref|YP_008604745.1| - 0.087 12.3 0.3 0.13 11.8 0.2 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) bZIP_1 PF00170.16 gi|549455986|ref|YP_008604745.1| - 0.087 12.7 0.5 0.19 11.7 0.4 1.5 1 0 0 1 1 1 0 bZIP transcription factor Herpes_BLRF2 PF05812.7 gi|549455986|ref|YP_008604745.1| - 0.11 12.3 0.6 0.18 11.6 0.4 1.3 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein GAS PF13851.1 gi|549455986|ref|YP_008604745.1| - 0.13 11.4 1.2 0.19 10.8 0.8 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4200 PF13863.1 gi|549455986|ref|YP_008604745.1| - 0.17 11.8 2.1 0.17 11.8 0.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) SlyX PF04102.7 gi|549455986|ref|YP_008604745.1| - 0.36 11.2 2.4 0.57 10.5 0.6 2.0 1 1 1 2 2 2 0 SlyX Atg14 PF10186.4 gi|549455986|ref|YP_008604745.1| - 2 7.3 3.8 0.66 8.8 0.8 1.4 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|549455986|ref|YP_008604745.1| - 8.8 5.8 11.9 0.054 13.0 1.2 2.0 2 0 0 2 2 2 0 IncA protein MmgE_PrpD PF03972.9 gi|549455987|ref|YP_008604746.1| - 3.2e-152 506.7 0.0 3.9e-152 506.4 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family SDH_alpha PF03313.10 gi|549455987|ref|YP_008604746.1| - 0.0012 17.9 4.9 0.0064 15.5 3.4 2.2 2 1 0 2 2 2 1 Serine dehydratase alpha chain Pantoate_ligase PF02569.10 gi|549455987|ref|YP_008604746.1| - 0.15 10.7 0.0 0.32 9.7 0.0 1.5 1 0 0 1 1 1 0 Pantoate-beta-alanine ligase Thi4 PF01946.12 gi|549455988|ref|YP_008604747.1| - 2.3e-63 213.3 0.0 3.2e-63 212.9 0.0 1.2 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|549455988|ref|YP_008604747.1| - 9.9e-16 57.5 0.9 9.6e-10 37.8 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|549455988|ref|YP_008604747.1| - 1.1e-14 54.3 0.7 1.6e-14 53.8 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|549455988|ref|YP_008604747.1| - 1.8e-11 43.5 6.3 1.1e-07 31.1 1.2 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|549455988|ref|YP_008604747.1| - 7.2e-10 38.7 1.4 1.7e-09 37.5 1.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|549455988|ref|YP_008604747.1| - 1.8e-08 33.2 0.0 2.4e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|549455988|ref|YP_008604747.1| - 1.7e-07 30.6 0.2 6.1e-07 28.8 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|549455988|ref|YP_008604747.1| - 3.2e-07 30.4 0.1 4.8e-07 29.8 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|549455988|ref|YP_008604747.1| - 4.9e-07 28.9 1.0 4.9e-07 28.9 0.7 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|549455988|ref|YP_008604747.1| - 1.3e-06 28.6 0.7 3.2e-06 27.3 0.5 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|549455988|ref|YP_008604747.1| - 2.6e-06 26.6 1.8 4.8e-05 22.4 0.2 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|549455988|ref|YP_008604747.1| - 0.00058 19.0 0.2 0.00089 18.4 0.1 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|549455988|ref|YP_008604747.1| - 0.00069 19.4 1.1 0.002 17.9 0.1 2.0 2 1 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|549455988|ref|YP_008604747.1| - 0.0021 18.4 0.2 0.0072 16.7 0.1 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|549455988|ref|YP_008604747.1| - 0.0043 15.7 0.3 0.024 13.2 0.2 1.9 2 0 0 2 2 2 1 Tryptophan halogenase ApbA PF02558.11 gi|549455988|ref|YP_008604747.1| - 0.027 13.8 0.4 0.064 12.6 0.3 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|549455988|ref|YP_008604747.1| - 0.043 14.0 0.1 0.12 12.5 0.0 1.8 2 1 0 2 2 2 0 Putative NAD(P)-binding ThiF PF00899.16 gi|549455988|ref|YP_008604747.1| - 0.072 12.9 0.1 0.16 11.7 0.1 1.6 1 0 0 1 1 1 0 ThiF family 3HCDH_N PF02737.13 gi|549455988|ref|YP_008604747.1| - 0.097 12.3 0.1 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NfeD PF01957.13 gi|549455989|ref|YP_008604748.1| - 5.2e-31 107.7 5.7 5.2e-31 107.7 4.0 2.4 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|549455989|ref|YP_008604748.1| - 4.2e-06 26.5 0.1 6.9e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|549455989|ref|YP_008604748.1| - 0.00045 19.0 0.2 0.0007 18.4 0.1 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Defensin_propep PF00879.13 gi|549455989|ref|YP_008604748.1| - 0.14 12.1 1.4 0.33 10.9 1.0 1.6 1 0 0 1 1 1 0 Defensin propeptide RskA PF10099.4 gi|549455989|ref|YP_008604748.1| - 0.2 11.3 2.3 0.18 11.5 0.5 1.7 2 0 0 2 2 2 0 Anti-sigma-K factor rskA Band_7 PF01145.20 gi|549455990|ref|YP_008604749.1| - 3.1e-38 131.4 3.1 4.1e-38 131.0 2.1 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|549455990|ref|YP_008604749.1| - 1.7e-05 24.4 0.2 0.00024 20.6 0.1 2.1 2 0 0 2 2 2 1 SPFH domain-Band 7 family Sec23_trunk PF04811.10 gi|549455990|ref|YP_008604749.1| - 0.076 12.3 0.1 0.23 10.8 0.0 1.7 2 0 0 2 2 2 0 Sec23/Sec24 trunk domain TatC PF00902.13 gi|549455991|ref|YP_008604750.1| - 1.8e-34 119.0 14.0 2.5e-34 118.5 9.7 1.2 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) MttA_Hcf106 PF02416.11 gi|549455992|ref|YP_008604751.1| - 4.5e-18 64.0 0.3 4.8e-18 64.0 0.2 1.0 1 0 0 1 1 1 1 mttA/Hcf106 family ABC_cobalt PF09819.4 gi|549455993|ref|YP_008604752.1| - 2.9e-25 88.6 13.6 2.9e-25 88.6 9.4 1.7 2 0 0 2 2 2 1 ABC-type cobalt transport system, permease component Na_H_antiport_2 PF13726.1 gi|549455993|ref|YP_008604752.1| - 2.2 8.2 11.5 0.055 13.3 3.2 2.0 2 1 1 3 3 3 0 Na+-H+ antiporter family DUF1212 PF06738.7 gi|549455993|ref|YP_008604752.1| - 2.7 7.4 10.6 0.3 10.5 2.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) Abi PF02517.11 gi|549455993|ref|YP_008604752.1| - 3.7 7.7 17.3 0.13 12.4 2.9 2.8 2 1 1 3 3 3 0 CAAX protease self-immunity ABC_tran PF00005.22 gi|549455994|ref|YP_008604753.1| - 9.4e-45 152.2 0.0 1.2e-21 77.4 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|549455994|ref|YP_008604753.1| - 7.1e-28 98.3 0.4 2.6e-08 34.1 0.0 4.1 3 1 0 4 4 4 3 AAA domain SMC_N PF02463.14 gi|549455994|ref|YP_008604753.1| - 1.2e-13 50.8 0.0 0.0033 16.6 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|549455994|ref|YP_008604753.1| - 4.6e-11 42.0 0.3 0.00027 20.4 0.0 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|549455994|ref|YP_008604753.1| - 1.6e-10 41.6 0.1 0.00042 20.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|549455994|ref|YP_008604753.1| - 5.1e-08 33.7 1.5 0.0026 18.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|549455994|ref|YP_008604753.1| - 8.1e-08 31.8 0.7 0.014 14.8 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|549455994|ref|YP_008604753.1| - 7.8e-07 29.2 0.7 0.0035 17.3 0.0 2.9 3 1 0 3 3 3 2 AAA ATPase domain UPF0079 PF02367.12 gi|549455994|ref|YP_008604753.1| - 9.5e-07 28.4 0.3 0.039 13.5 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|549455994|ref|YP_008604753.1| - 1.3e-06 28.1 0.9 0.0015 18.2 0.0 2.3 2 0 0 2 2 2 2 NACHT domain AAA_33 PF13671.1 gi|549455994|ref|YP_008604753.1| - 1.5e-06 28.1 3.0 0.01 15.7 0.1 2.6 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|549455994|ref|YP_008604753.1| - 2.3e-06 27.7 0.5 0.012 15.7 0.0 2.6 2 1 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|549455994|ref|YP_008604753.1| - 3e-06 26.3 1.9 0.021 13.7 0.2 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein MobB PF03205.9 gi|549455994|ref|YP_008604753.1| - 3e-06 26.9 4.9 0.0015 18.2 0.2 3.0 3 0 0 3 3 3 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|549455994|ref|YP_008604753.1| - 1.1e-05 25.7 2.2 0.06 13.6 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|549455994|ref|YP_008604753.1| - 1.1e-05 25.0 1.9 0.016 14.9 0.1 3.2 3 0 0 3 3 2 2 Part of AAA domain AAA_30 PF13604.1 gi|549455994|ref|YP_008604753.1| - 2.3e-05 24.0 0.1 0.041 13.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|549455994|ref|YP_008604753.1| - 2.8e-05 24.0 0.6 0.027 14.3 0.1 2.9 3 0 0 3 3 3 1 AAA domain Mg_chelatase PF01078.16 gi|549455994|ref|YP_008604753.1| - 3.4e-05 23.1 0.1 0.088 11.9 0.0 2.6 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|549455994|ref|YP_008604753.1| - 3.4e-05 23.6 0.6 0.1 12.2 0.0 2.6 3 0 0 3 3 2 2 Archaeal ATPase DUF258 PF03193.11 gi|549455994|ref|YP_008604753.1| - 5.1e-05 22.5 0.6 0.041 13.0 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|549455994|ref|YP_008604753.1| - 5.4e-05 22.7 0.4 0.36 10.2 0.1 2.6 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|549455994|ref|YP_008604753.1| - 9.9e-05 21.9 2.6 0.074 12.4 0.0 2.9 3 0 0 3 3 3 2 AAA-like domain SRP54 PF00448.17 gi|549455994|ref|YP_008604753.1| - 0.00014 21.4 3.2 0.027 13.9 0.1 2.3 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|549455994|ref|YP_008604753.1| - 0.00015 21.7 0.6 0.025 14.5 0.0 2.9 3 0 0 3 3 2 1 AAA domain NTPase_1 PF03266.10 gi|549455994|ref|YP_008604753.1| - 0.00015 21.4 2.4 0.092 12.4 0.0 2.7 3 0 0 3 3 2 2 NTPase AAA_15 PF13175.1 gi|549455994|ref|YP_008604753.1| - 0.00023 20.3 0.0 0.26 10.2 0.0 3.6 4 0 0 4 4 4 1 AAA ATPase domain Miro PF08477.8 gi|549455994|ref|YP_008604753.1| - 0.00027 21.4 0.7 0.039 14.4 0.0 2.6 2 0 0 2 2 2 1 Miro-like protein SbcCD_C PF13558.1 gi|549455994|ref|YP_008604753.1| - 0.00044 20.1 0.0 0.78 9.6 0.0 3.1 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.7 gi|549455994|ref|YP_008604753.1| - 0.00055 19.0 0.3 0.96 8.5 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_24 PF13479.1 gi|549455994|ref|YP_008604753.1| - 0.001 18.6 6.0 0.068 12.7 0.2 2.9 3 0 0 3 3 3 1 AAA domain PRK PF00485.13 gi|549455994|ref|YP_008604753.1| - 0.0011 18.5 0.3 0.4 10.2 0.1 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family cobW PF02492.14 gi|549455994|ref|YP_008604753.1| - 0.0013 18.1 3.1 0.059 12.8 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|549455994|ref|YP_008604753.1| - 0.0015 18.7 0.8 0.17 12.0 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|549455994|ref|YP_008604753.1| - 0.0016 17.3 0.7 0.21 10.4 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain SRPRB PF09439.5 gi|549455994|ref|YP_008604753.1| - 0.0017 17.5 0.4 1.7 7.8 0.0 2.3 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit DEAD PF00270.24 gi|549455994|ref|YP_008604753.1| - 0.0026 17.2 0.0 0.62 9.5 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase ATP_bind_1 PF03029.12 gi|549455994|ref|YP_008604753.1| - 0.0028 17.2 1.5 0.67 9.4 0.0 2.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|549455994|ref|YP_008604753.1| - 0.0034 17.5 0.2 1 9.5 0.0 2.4 2 0 0 2 2 2 1 RNA helicase KaiC PF06745.8 gi|549455994|ref|YP_008604753.1| - 0.004 16.3 0.6 0.99 8.4 0.1 2.3 2 0 0 2 2 2 1 KaiC RecA PF00154.16 gi|549455994|ref|YP_008604753.1| - 0.0043 16.1 0.3 1.5 7.8 0.0 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|549455994|ref|YP_008604753.1| - 0.0045 16.4 0.6 1.1 8.6 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein ABC_ATPase PF09818.4 gi|549455994|ref|YP_008604753.1| - 0.0048 15.5 0.4 0.37 9.3 0.0 3.1 3 0 0 3 3 3 1 Predicted ATPase of the ABC class PhoH PF02562.11 gi|549455994|ref|YP_008604753.1| - 0.0054 15.9 0.3 1.4 8.1 0.1 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_5 PF07728.9 gi|549455994|ref|YP_008604753.1| - 0.0057 16.3 0.6 0.3 10.7 0.1 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MutS_V PF00488.16 gi|549455994|ref|YP_008604753.1| - 0.0086 15.5 0.1 4.5 6.5 0.0 2.4 2 0 0 2 2 2 0 MutS domain V Pox_A32 PF04665.7 gi|549455994|ref|YP_008604753.1| - 0.012 14.9 1.0 1.2 8.3 0.1 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein Rad17 PF03215.10 gi|549455994|ref|YP_008604753.1| - 0.016 13.9 0.1 3.8 6.0 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein MMR_HSR1 PF01926.18 gi|549455994|ref|YP_008604753.1| - 0.019 14.9 0.4 1.1 9.2 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase Septin PF00735.13 gi|549455994|ref|YP_008604753.1| - 0.021 13.8 1.0 3.9 6.3 0.0 2.2 2 0 0 2 2 2 0 Septin PduV-EutP PF10662.4 gi|549455994|ref|YP_008604753.1| - 0.028 13.8 2.7 1.2 8.6 0.0 2.7 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation PIF1 PF05970.9 gi|549455994|ref|YP_008604753.1| - 0.038 12.9 0.2 5.8 5.7 0.1 2.2 2 0 0 2 2 2 0 PIF1-like helicase RNA12 PF10443.4 gi|549455994|ref|YP_008604753.1| - 0.073 11.5 0.3 4.4 5.6 0.1 2.1 2 0 0 2 2 2 0 RNA12 protein ATP-synt_ab PF00006.20 gi|549455994|ref|YP_008604753.1| - 0.074 12.5 0.8 2.7 7.4 0.0 2.6 3 0 0 3 3 2 0 ATP synthase alpha/beta family, nucleotide-binding domain KAP_NTPase PF07693.9 gi|549455994|ref|YP_008604753.1| - 0.075 12.0 0.0 5.6 5.8 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain TIP49 PF06068.8 gi|549455994|ref|YP_008604753.1| - 0.15 10.7 1.4 2.6 6.6 0.0 2.4 3 0 0 3 3 2 0 TIP49 C-terminus Thymidylate_kin PF02223.12 gi|549455994|ref|YP_008604753.1| - 0.15 11.4 0.7 3.1 7.1 0.0 3.2 5 0 0 5 5 3 0 Thymidylate kinase APS_kinase PF01583.15 gi|549455994|ref|YP_008604753.1| - 0.16 11.6 1.0 10 5.7 0.1 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_13 PF13166.1 gi|549455994|ref|YP_008604753.1| - 0.16 10.4 0.0 1 7.7 0.0 2.1 3 0 0 3 3 3 0 AAA domain DUF3584 PF12128.3 gi|549455994|ref|YP_008604753.1| - 0.18 9.0 0.0 0.26 8.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_11 PF13086.1 gi|549455994|ref|YP_008604753.1| - 0.22 11.0 0.0 4.6 6.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|549455994|ref|YP_008604753.1| - 0.26 10.0 3.3 2.5 6.7 0.1 2.7 3 0 0 3 3 2 0 ArgK protein CbiQ PF02361.11 gi|549455995|ref|YP_008604754.1| - 2.2e-07 30.6 10.3 3.3e-07 30.0 7.2 1.2 1 0 0 1 1 1 1 Cobalt transport protein MerC PF03203.9 gi|549455995|ref|YP_008604754.1| - 2.7 8.3 10.0 7.1 7.0 2.8 2.5 2 1 0 2 2 2 0 MerC mercury resistance protein Lactamase_B PF00753.22 gi|549455996|ref|YP_008604755.1| - 1.2e-23 83.8 0.2 1.9e-23 83.1 0.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|549455996|ref|YP_008604755.1| - 2.6e-05 23.8 0.0 4e-05 23.2 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Acyl-CoA_dh_1 PF00441.19 gi|549455998|ref|YP_008604757.1| - 3.2e-48 163.6 3.2 4.5e-48 163.1 2.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|549455998|ref|YP_008604757.1| - 5.8e-32 110.6 0.8 8.7e-32 110.0 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|549455998|ref|YP_008604757.1| - 2.2e-18 66.8 1.5 3.3e-18 66.2 1.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|549455998|ref|YP_008604757.1| - 2.3e-18 65.4 0.1 4.5e-18 64.5 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain DHHA1 PF02272.14 gi|549455998|ref|YP_008604757.1| - 0.021 14.4 0.2 9.8 5.9 0.0 3.2 2 0 0 2 2 2 0 DHHA1 domain HpaB_N PF11794.3 gi|549455998|ref|YP_008604757.1| - 0.056 12.8 0.0 0.19 11.0 0.0 1.9 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Amidohydro_3 PF07969.6 gi|549455999|ref|YP_008604758.1| - 1.4e-52 179.3 0.0 1.8e-52 178.9 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|549455999|ref|YP_008604758.1| - 3.6e-05 23.5 0.0 6.4e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Amidohydrolase DUF2910 PF11139.3 gi|549456000|ref|YP_008604759.1| - 0.053 12.6 2.2 0.055 12.5 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) Bac_rhodopsin PF01036.13 gi|549456000|ref|YP_008604759.1| - 0.082 12.2 0.8 0.11 11.7 0.5 1.3 1 1 0 1 1 1 0 Bacteriorhodopsin-like protein SdpI PF13630.1 gi|549456000|ref|YP_008604759.1| - 0.14 11.8 0.7 0.2 11.4 0.5 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF308 PF03729.8 gi|549456000|ref|YP_008604759.1| - 0.78 9.7 6.8 1.3 9.0 4.7 1.4 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) PGPGW PF09656.5 gi|549456000|ref|YP_008604759.1| - 0.83 9.0 7.9 4.2 6.7 0.8 2.1 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) DUF1469 PF07332.6 gi|549456000|ref|YP_008604759.1| - 1 9.1 6.0 1.2 8.8 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1206 PF06724.6 gi|549456000|ref|YP_008604759.1| - 1.9 8.2 6.2 0.77 9.5 1.0 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) CstA PF02554.9 gi|549456001|ref|YP_008604760.1| - 1.2e-121 405.8 23.4 1.2e-121 405.8 16.2 2.0 1 1 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|549456001|ref|YP_008604760.1| - 2.7e-25 89.1 9.0 2.7e-25 89.1 6.3 3.6 4 0 0 4 4 4 1 C-terminal domain on CstA (DUF4161) DUF2973 PF11189.3 gi|549456001|ref|YP_008604760.1| - 5.1 6.9 10.5 2.9 7.7 1.0 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2973) ArsA_ATPase PF02374.10 gi|549456003|ref|YP_008604762.1| - 2.4e-27 95.7 0.0 2.8e-27 95.5 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.4 gi|549456003|ref|YP_008604762.1| - 0.013 15.3 0.0 0.27 11.1 0.0 2.3 2 0 0 2 2 2 0 ParA/MinD ATPase like tRNA-synt_2c PF01411.14 gi|549456004|ref|YP_008604763.1| - 5e-112 374.9 0.0 7.2e-112 374.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|549456004|ref|YP_008604763.1| - 1.4e-15 56.8 0.7 2.9e-15 55.8 0.2 1.8 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|549456004|ref|YP_008604763.1| - 0.001 18.7 1.1 0.0025 17.5 0.7 1.7 1 0 0 1 1 1 1 DHHA1 domain Apolipoprotein PF01442.13 gi|549456004|ref|YP_008604763.1| - 0.011 15.2 1.3 0.024 14.1 0.9 1.5 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Ribosomal_60s PF00428.14 gi|549456005|ref|YP_008604764.1| - 2.3e-15 56.7 22.7 2.7e-15 56.5 15.7 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein IFT43 PF15305.1 gi|549456005|ref|YP_008604764.1| - 0.013 15.4 1.1 0.017 15.1 0.8 1.1 1 0 0 1 1 1 0 Intraflagellar transport protein 43 PepSY_2 PF13670.1 gi|549456005|ref|YP_008604764.1| - 0.035 14.0 7.3 2.9 7.8 0.0 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain UBN_AB PF14075.1 gi|549456005|ref|YP_008604764.1| - 0.058 13.0 2.3 0.067 12.8 1.6 1.0 1 0 0 1 1 1 0 Ubinuclein conserved middle domain DUF177 PF02620.12 gi|549456005|ref|YP_008604764.1| - 0.061 13.3 1.5 0.069 13.1 1.1 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1399 Myc_N PF01056.13 gi|549456005|ref|YP_008604764.1| - 0.093 11.8 3.3 0.12 11.5 2.3 1.1 1 0 0 1 1 1 0 Myc amino-terminal region HEPPP_synt_1 PF07307.6 gi|549456005|ref|YP_008604764.1| - 0.13 11.7 0.8 0.17 11.2 0.5 1.3 1 1 1 2 2 2 0 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 RNase_H2-Ydr279 PF09468.5 gi|549456005|ref|YP_008604764.1| - 0.51 9.4 2.1 0.62 9.2 1.5 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) Flavodoxin_1 PF00258.20 gi|549456005|ref|YP_008604764.1| - 0.52 10.3 3.5 0.67 9.9 2.4 1.2 1 0 0 1 1 1 0 Flavodoxin Band_7 PF01145.20 gi|549456005|ref|YP_008604764.1| - 0.93 9.3 7.0 1.3 8.9 4.9 1.3 1 0 0 1 1 1 0 SPFH domain / Band 7 family BSP_II PF05432.6 gi|549456005|ref|YP_008604764.1| - 1.4 8.1 6.9 1.4 8.1 4.8 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) Sigma70_ner PF04546.8 gi|549456005|ref|YP_008604764.1| - 1.5 8.4 8.2 1.5 8.3 5.3 1.3 1 1 0 1 1 1 0 Sigma-70, non-essential region DUF2360 PF10152.4 gi|549456005|ref|YP_008604764.1| - 3 8.1 6.1 4 7.7 4.2 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) Ribosomal_L10 PF00466.15 gi|549456006|ref|YP_008604765.1| - 2.3e-18 65.9 0.1 1.2e-17 63.6 0.0 2.2 2 0 0 2 2 2 1 Ribosomal protein L10 RBD PF02196.10 gi|549456006|ref|YP_008604765.1| - 0.14 11.9 0.0 0.55 10.0 0.0 2.0 2 0 0 2 2 2 0 Raf-like Ras-binding domain Ribosomal_60s PF00428.14 gi|549456006|ref|YP_008604765.1| - 3.4 8.1 33.7 6.2 7.2 21.7 2.6 2 1 1 3 3 3 0 60s Acidic ribosomal protein Ribosomal_L1 PF00687.16 gi|549456007|ref|YP_008604766.1| - 5.7e-40 136.9 0.0 6.7e-40 136.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.14 gi|549456008|ref|YP_008604767.1| - 7.9e-22 77.1 0.9 1e-21 76.8 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain FliH PF02108.11 gi|549456008|ref|YP_008604767.1| - 0.0039 17.0 0.0 0.0053 16.6 0.0 1.1 1 0 0 1 1 1 1 Flagellar assembly protein FliH Spt5-NGN PF03439.8 gi|549456009|ref|YP_008604768.1| - 4.4e-20 71.2 0.0 7.5e-20 70.4 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|549456009|ref|YP_008604768.1| - 8.6e-08 31.6 0.6 2.1e-07 30.3 0.4 1.7 1 0 0 1 1 1 1 KOW motif Lipid_DES PF08557.5 gi|549456009|ref|YP_008604768.1| - 0.034 13.3 0.6 0.069 12.4 0.4 1.5 1 0 0 1 1 1 0 Sphingolipid Delta4-desaturase (DES) NusG PF02357.14 gi|549456009|ref|YP_008604768.1| - 0.044 14.0 0.0 0.28 11.4 0.0 2.2 2 1 0 2 2 2 0 Transcription termination factor nusG Mut7-C PF01927.11 gi|549456011|ref|YP_008604770.1| - 4.1e-51 172.8 0.1 4.7e-51 172.6 0.1 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain Rubredoxin PF00301.15 gi|549456011|ref|YP_008604770.1| - 0.041 13.7 1.2 0.075 12.9 0.8 1.5 1 1 0 1 1 1 0 Rubredoxin HypA PF01155.14 gi|549456011|ref|YP_008604770.1| - 0.12 12.0 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Rad50_zn_hook PF04423.9 gi|549456011|ref|YP_008604770.1| - 0.14 11.6 0.7 0.37 10.3 0.3 1.8 1 1 1 2 2 2 0 Rad50 zinc hook motif zf-IS66 PF13005.2 gi|549456011|ref|YP_008604770.1| - 0.16 11.9 3.7 1 9.4 2.5 2.1 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 CBS PF00571.23 gi|549456012|ref|YP_008604771.1| - 2.6e-39 132.7 4.2 3.6e-11 42.6 0.0 4.1 4 0 0 4 4 4 4 CBS domain Cache_1 PF02743.13 gi|549456012|ref|YP_008604771.1| - 0.02 14.4 0.1 2.8 7.5 0.0 2.8 2 1 0 2 2 2 0 Cache domain DUF72 PF01904.13 gi|549456013|ref|YP_008604772.1| - 5e-42 144.2 0.1 5.9e-42 143.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 zf-P11 PF03854.9 gi|549456014|ref|YP_008604773.1| - 0.093 12.2 1.3 0.15 11.5 0.9 1.3 1 0 0 1 1 1 0 P-11 zinc finger Prok-RING_4 PF14447.1 gi|549456014|ref|YP_008604773.1| - 0.11 12.0 3.2 0.19 11.3 2.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 zf-HIT PF04438.11 gi|549456014|ref|YP_008604773.1| - 0.21 11.2 2.7 0.29 10.8 0.4 2.0 2 0 0 2 2 2 0 HIT zinc finger PCNA_N PF00705.13 gi|549456015|ref|YP_008604774.1| - 6.5e-06 25.6 0.0 1.2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|549456015|ref|YP_008604774.1| - 1.9e-05 24.5 0.4 0.00047 20.0 0.1 2.9 1 1 3 4 4 4 1 Proliferating cell nuclear antigen, C-terminal domain DUF592 PF04574.8 gi|549456016|ref|YP_008604775.1| - 0.018 14.6 0.3 0.026 14.0 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF592) EMG1 PF03587.9 gi|549456016|ref|YP_008604775.1| - 0.029 13.6 0.0 0.036 13.3 0.0 1.1 1 0 0 1 1 1 0 EMG1/NEP1 methyltransferase DUF3321 PF11968.3 gi|549456016|ref|YP_008604775.1| - 0.044 13.4 0.1 1.7 8.1 0.0 2.1 2 0 0 2 2 2 0 Putative methyltransferase (DUF3321) Lipocalin_6 PF13944.1 gi|549456016|ref|YP_008604775.1| - 0.088 12.9 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Lipocalin-like domain B5 PF03484.10 gi|549456016|ref|YP_008604775.1| - 0.092 12.5 0.1 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetase B5 domain Mut7-C PF01927.11 gi|549456016|ref|YP_008604775.1| - 0.11 12.4 0.0 17 5.3 0.0 2.1 2 0 0 2 2 2 0 Mut7-C RNAse domain DMRL_synthase PF00885.14 gi|549456017|ref|YP_008604776.1| - 0.043 13.4 1.3 0.089 12.4 0.9 1.7 1 1 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase MRP-S31 PF15433.1 gi|549456017|ref|YP_008604776.1| - 2.4 7.4 15.3 2.7 7.3 10.6 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S31 MDFI PF15316.1 gi|549456017|ref|YP_008604776.1| - 2.5 8.0 5.1 3.2 7.7 3.5 1.2 1 0 0 1 1 1 0 MyoD family inhibitor DEAD PF00270.24 gi|549456019|ref|YP_008604778.1| - 1.4e-27 96.2 0.0 3.4e-27 94.9 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|549456019|ref|YP_008604778.1| - 5.9e-26 91.3 0.2 3.2e-25 88.9 0.1 2.3 3 0 0 3 3 3 1 DEAD/H associated Helicase_C PF00271.26 gi|549456019|ref|YP_008604778.1| - 1.2e-14 53.9 0.1 4.9e-14 51.9 0.1 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|549456019|ref|YP_008604778.1| - 0.00016 21.5 0.0 0.00081 19.2 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|549456019|ref|YP_008604778.1| - 0.0087 15.7 2.2 2.8 7.7 0.3 3.1 2 0 0 2 2 2 2 Part of AAA domain AAA_10 PF12846.2 gi|549456019|ref|YP_008604778.1| - 0.056 12.8 0.4 7.2 5.9 0.0 2.5 1 1 1 2 2 2 0 AAA-like domain TK PF00265.13 gi|549456019|ref|YP_008604778.1| - 0.16 11.5 0.0 0.49 9.9 0.0 1.7 1 1 0 1 1 1 0 Thymidine kinase DHH PF01368.15 gi|549456020|ref|YP_008604779.1| - 0.012 15.2 0.0 0.041 13.5 0.0 1.8 1 1 0 1 1 1 0 DHH family DHHA1 PF02272.14 gi|549456020|ref|YP_008604779.1| - 0.041 13.5 0.1 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 DHHA1 domain tRNA-synt_2 PF00152.15 gi|549456021|ref|YP_008604780.1| - 7.1e-86 288.0 0.1 8.7e-86 287.7 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|549456021|ref|YP_008604780.1| - 1.5e-14 53.5 0.1 2.5e-14 52.8 0.1 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|549456021|ref|YP_008604780.1| - 0.0011 18.2 0.2 1.4 8.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) DUF61 PF01886.11 gi|549456022|ref|YP_008604781.1| - 6.9e-13 48.5 0.0 7.7e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF61 Fibrillarin PF01269.12 gi|549456023|ref|YP_008604782.1| - 5.9e-99 329.6 0.0 6.7e-99 329.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|549456023|ref|YP_008604782.1| - 0.00052 19.5 0.0 0.00081 18.9 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|549456023|ref|YP_008604782.1| - 0.0055 16.2 0.0 0.01 15.3 0.0 1.5 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Nop PF01798.13 gi|549456024|ref|YP_008604783.1| - 6.7e-54 181.2 0.3 1.1e-53 180.6 0.2 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|549456024|ref|YP_008604783.1| - 1.4e-22 79.2 0.3 9.2e-22 76.6 0.1 2.1 2 0 0 2 2 2 1 NOSIC (NUC001) domain UBA PF00627.26 gi|549456024|ref|YP_008604783.1| - 0.0013 18.4 0.1 0.032 14.0 0.0 2.8 2 0 0 2 2 2 1 UBA/TS-N domain DUF3173 PF11372.3 gi|549456024|ref|YP_008604783.1| - 0.012 15.1 0.0 0.033 13.7 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3173) HhH-GPD PF00730.20 gi|549456024|ref|YP_008604783.1| - 0.036 14.3 0.5 0.1 12.8 0.3 2.1 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein RuvA_C PF07499.8 gi|549456024|ref|YP_008604783.1| - 0.046 13.8 2.8 0.28 11.3 0.0 3.3 3 0 0 3 3 3 0 RuvA, C-terminal domain DUF1758 PF05585.7 gi|549456024|ref|YP_008604783.1| - 0.075 12.5 0.1 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative peptidase (DUF1758) Tweety PF04906.8 gi|549456024|ref|YP_008604783.1| - 0.16 10.3 0.1 1.2 7.4 0.0 2.0 1 1 1 2 2 2 0 Tweety HHH_5 PF14520.1 gi|549456024|ref|YP_008604783.1| - 1.2 9.3 5.7 0.65 10.2 0.8 3.0 2 1 0 2 2 2 0 Helix-hairpin-helix domain Ribosomal_S30 PF04758.9 gi|549456025|ref|YP_008604784.1| - 4.6e-11 42.3 3.4 5e-11 42.1 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Sas10 PF09368.5 gi|549456025|ref|YP_008604784.1| - 0.029 14.5 4.1 0.049 13.8 3.0 1.4 1 1 0 1 1 1 0 Sas10 C-terminal domain Asparaginase PF00710.15 gi|549456026|ref|YP_008604785.1| - 4.8e-96 321.3 0.0 5.6e-96 321.0 0.0 1.0 1 0 0 1 1 1 1 Asparaginase Calmodulin_bind PF07887.6 gi|549456026|ref|YP_008604785.1| - 0.016 14.2 0.0 0.026 13.5 0.0 1.2 1 0 0 1 1 1 0 Calmodulin binding protein-like Gly_reductase PF09338.6 gi|549456026|ref|YP_008604785.1| - 0.1 10.7 0.0 0.24 9.5 0.0 1.6 2 0 0 2 2 2 0 Glycine/sarcosine/betaine reductase component B subunits PI-PLC-Y PF00387.14 gi|549456026|ref|YP_008604785.1| - 0.16 11.9 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, Y domain GatB_N PF02934.10 gi|549456027|ref|YP_008604786.1| - 6.2e-82 274.7 0.0 8.2e-82 274.3 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|549456027|ref|YP_008604786.1| - 5.4e-23 81.3 0.1 1.2e-22 80.2 0.1 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|549456027|ref|YP_008604786.1| - 1.1e-17 63.9 0.0 6.7e-17 61.4 0.0 2.2 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|549456027|ref|YP_008604786.1| - 1.2e-07 31.6 0.1 2.7e-07 30.5 0.1 1.6 1 0 0 1 1 1 1 Yqey-like protein FumaraseC_C PF10415.4 gi|549456027|ref|YP_008604786.1| - 0.05 13.6 3.0 0.31 11.1 0.5 3.2 2 1 0 2 2 2 0 Fumarase C C-terminus T2SF PF00482.18 gi|549456028|ref|YP_008604787.1| - 3.7e-20 72.0 4.2 2.8e-12 46.6 0.2 3.4 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|549456029|ref|YP_008604788.1| - 5.2e-48 163.2 0.0 9.8e-48 162.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|549456029|ref|YP_008604788.1| - 3e-05 23.4 0.3 0.00014 21.3 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|549456029|ref|YP_008604788.1| - 0.0009 19.5 0.0 0.0024 18.1 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_17 PF13207.1 gi|549456029|ref|YP_008604788.1| - 0.003 18.3 0.3 0.026 15.3 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|549456029|ref|YP_008604788.1| - 0.0035 17.4 0.0 0.0089 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|549456029|ref|YP_008604788.1| - 0.0067 16.7 0.2 0.031 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|549456029|ref|YP_008604788.1| - 0.024 14.3 0.1 0.069 12.9 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|549456029|ref|YP_008604788.1| - 0.025 14.8 0.0 0.065 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|549456029|ref|YP_008604788.1| - 0.026 13.9 0.0 0.04 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Viral_helicase1 PF01443.13 gi|549456029|ref|YP_008604788.1| - 0.03 13.8 0.1 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase FtsK_SpoIIIE PF01580.13 gi|549456029|ref|YP_008604788.1| - 0.032 13.7 0.0 0.08 12.4 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family SRP54 PF00448.17 gi|549456029|ref|YP_008604788.1| - 0.035 13.5 0.1 0.062 12.7 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|549456029|ref|YP_008604788.1| - 0.068 12.7 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|549456029|ref|YP_008604788.1| - 0.081 12.7 0.1 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Miro PF08477.8 gi|549456029|ref|YP_008604788.1| - 0.14 12.6 0.1 0.89 10.0 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein cobW PF02492.14 gi|549456029|ref|YP_008604788.1| - 0.19 11.1 0.1 0.37 10.2 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain OsmC PF02566.14 gi|549456030|ref|YP_008604789.1| - 7.5e-13 48.5 0.0 1.1e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein SDH_sah PF01972.11 gi|549456031|ref|YP_008604790.1| - 2.4e-116 387.5 0.0 2.8e-116 387.2 0.0 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|549456031|ref|YP_008604790.1| - 5.2e-09 36.0 0.1 1.3e-07 31.5 0.0 2.1 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.13 gi|549456031|ref|YP_008604790.1| - 0.0015 18.2 0.0 0.0031 17.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase family S49 SRP54_N PF02881.14 gi|549456031|ref|YP_008604790.1| - 0.17 11.9 0.9 0.31 11.1 0.6 1.4 1 0 0 1 1 1 0 SRP54-type protein, helical bundle domain Fer2_2 PF01799.15 gi|549456032|ref|YP_008604791.1| - 4.9e-33 112.8 0.0 4.9e-33 112.8 0.0 2.0 2 1 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|549456032|ref|YP_008604791.1| - 2.9e-06 26.9 0.2 2.9e-06 26.9 0.2 2.1 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|549456032|ref|YP_008604791.1| - 0.00063 19.5 0.1 0.00094 18.9 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|549456032|ref|YP_008604791.1| - 0.13 12.0 3.7 3.6 7.4 2.6 2.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.13 gi|549456033|ref|YP_008604792.1| - 1.4e-161 538.5 0.0 1.7e-161 538.2 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|549456033|ref|YP_008604792.1| - 2.1e-31 108.2 0.0 6.4e-31 106.6 0.0 1.9 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF865 PF05906.6 gi|549456033|ref|YP_008604792.1| - 0.0094 15.5 2.6 0.0095 15.4 0.1 2.2 2 0 0 2 2 2 1 Herpesvirus-7 repeat of unknown function (DUF865) FAD_binding_5 PF00941.16 gi|549456034|ref|YP_008604793.1| - 2.9e-53 179.7 0.0 4.1e-53 179.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|549456034|ref|YP_008604793.1| - 4e-27 94.1 1.0 7.3e-27 93.3 0.7 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain AAA_5 PF07728.9 gi|549456035|ref|YP_008604794.1| - 9.8e-13 48.0 0.0 1.3e-11 44.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|549456035|ref|YP_008604794.1| - 2e-10 40.9 0.0 5e-10 39.6 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|549456035|ref|YP_008604794.1| - 1.8e-09 37.3 0.0 0.0016 18.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|549456035|ref|YP_008604794.1| - 2.1e-06 27.8 0.2 3.4e-05 23.9 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|549456035|ref|YP_008604794.1| - 5.5e-05 23.4 0.8 0.002 18.4 0.5 2.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|549456035|ref|YP_008604794.1| - 5.7e-05 23.2 0.0 0.0003 20.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|549456035|ref|YP_008604794.1| - 0.0004 20.0 0.0 0.0019 17.9 0.0 2.1 2 1 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|549456035|ref|YP_008604794.1| - 0.00054 20.7 0.5 0.002 18.9 0.4 2.3 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|549456035|ref|YP_008604794.1| - 0.0006 18.9 0.1 0.038 13.0 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activ_2 PF14532.1 gi|549456035|ref|YP_008604794.1| - 0.0009 19.3 0.0 0.026 14.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|549456035|ref|YP_008604794.1| - 0.0024 17.5 0.1 0.014 15.0 0.0 2.2 1 1 0 1 1 1 1 NACHT domain TIP49 PF06068.8 gi|549456035|ref|YP_008604794.1| - 0.0034 16.1 0.2 0.089 11.4 0.0 2.2 2 1 0 2 2 2 1 TIP49 C-terminus Sigma54_activat PF00158.21 gi|549456035|ref|YP_008604794.1| - 0.0082 15.6 0.0 1.9 7.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|549456035|ref|YP_008604794.1| - 0.0099 15.8 0.0 0.02 14.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.17 gi|549456035|ref|YP_008604794.1| - 0.013 15.6 0.0 0.062 13.4 0.0 2.0 1 1 0 1 1 1 0 RNA helicase UPF0079 PF02367.12 gi|549456035|ref|YP_008604794.1| - 0.014 15.0 0.1 0.026 14.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|549456035|ref|YP_008604794.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|549456035|ref|YP_008604794.1| - 0.15 11.2 0.1 0.22 10.6 0.0 1.4 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI VWA_CoxE PF05762.9 gi|549456036|ref|YP_008604795.1| - 1.9e-55 187.4 2.8 2.8e-55 186.8 2.0 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|549456036|ref|YP_008604795.1| - 3.6e-06 27.2 0.0 1.6e-05 25.1 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain TPR_14 PF13428.1 gi|549456036|ref|YP_008604795.1| - 0.53 11.0 7.9 0.21 12.2 0.5 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|549456036|ref|YP_008604795.1| - 0.96 10.2 7.6 2.7 8.7 1.4 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|549456036|ref|YP_008604795.1| - 1.3 9.1 6.1 18 5.4 0.0 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat NTP_transf_3 PF12804.2 gi|549456037|ref|YP_008604796.1| - 5.5e-30 104.5 0.7 7e-30 104.2 0.5 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|549456037|ref|YP_008604796.1| - 7e-05 22.4 0.0 0.00022 20.8 0.0 1.8 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase COXG PF06240.8 gi|549456038|ref|YP_008604797.1| - 2.6e-43 147.0 0.0 3e-43 146.8 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.4 gi|549456038|ref|YP_008604797.1| - 3.8e-17 62.7 0.1 4.3e-17 62.5 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|549456038|ref|YP_008604797.1| - 5.2e-06 26.4 0.0 1.1e-05 25.4 0.0 1.5 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|549456038|ref|YP_008604797.1| - 8.6e-06 25.8 0.0 1e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein DUF3211 PF11485.3 gi|549456038|ref|YP_008604797.1| - 0.047 13.7 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3211) XdhC_C PF13478.1 gi|549456039|ref|YP_008604798.1| - 8.4e-25 87.6 0.0 1.2e-24 87.1 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|549456039|ref|YP_008604798.1| - 4.5e-18 64.6 0.3 9.6e-18 63.5 0.2 1.6 1 0 0 1 1 1 1 XdhC and CoxI family DNA_pol_B PF00136.16 gi|549456041|ref|YP_008604800.1| - 3.3e-17 62.4 0.0 5.2e-16 58.4 0.0 2.1 1 1 0 1 1 1 1 DNA polymerase family B Mic1 PF07035.7 gi|549456042|ref|YP_008604801.1| - 0.066 12.5 0.0 0.073 12.4 0.0 1.1 1 0 0 1 1 1 0 Colon cancer-associated protein Mic1-like KaiA PF07688.7 gi|549456042|ref|YP_008604801.1| - 0.13 11.5 0.2 0.15 11.2 0.2 1.1 1 0 0 1 1 1 0 KaiA domain Imm31 PF15595.1 gi|549456045|ref|YP_008604804.1| - 0.037 13.7 0.0 1.7 8.4 0.0 2.2 2 0 0 2 2 2 0 Immunity protein 31 PmbA_TldD PF01523.11 gi|549456045|ref|YP_008604804.1| - 0.073 12.3 0.1 0.08 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative modulator of DNA gyrase DUF488 PF04343.8 gi|549456048|ref|YP_008604807.1| - 3.6e-29 101.6 0.0 4.3e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Pur_DNA_glyco PF02245.11 gi|549456049|ref|YP_008604808.1| - 6.6e-39 132.9 0.0 1.3e-38 132.0 0.0 1.4 1 1 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) Aminotran_1_2 PF00155.16 gi|549456050|ref|YP_008604809.1| - 4.3e-74 249.6 0.0 5e-74 249.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|549456050|ref|YP_008604809.1| - 8.7e-13 48.0 0.0 1.7e-12 47.1 0.0 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|549456050|ref|YP_008604809.1| - 3e-08 32.7 0.0 5.2e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|549456050|ref|YP_008604809.1| - 4.5e-07 29.2 0.0 6.5e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|549456050|ref|YP_008604809.1| - 5.1e-05 21.7 0.0 8.5e-05 20.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF629 PF04780.7 gi|549456052|ref|YP_008604811.1| - 0.0032 16.0 0.0 0.0033 16.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF629) Rad50_zn_hook PF04423.9 gi|549456052|ref|YP_008604811.1| - 0.15 11.5 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Rad50 zinc hook motif BPD_transp_1 PF00528.17 gi|549456053|ref|YP_008604812.1| - 2.8e-09 36.7 21.4 2.8e-09 36.7 14.8 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SUR7 PF06687.7 gi|549456053|ref|YP_008604812.1| - 0.66 9.5 4.7 0.87 9.1 2.7 1.6 1 1 0 1 1 1 0 SUR7/PalI family BPD_transp_1 PF00528.17 gi|549456054|ref|YP_008604813.1| - 3.5e-09 36.4 23.3 3.5e-09 36.4 16.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|549456055|ref|YP_008604814.1| - 1.1e-52 179.7 6.9 1.4e-52 179.3 4.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|549456055|ref|YP_008604814.1| - 1.7e-06 27.9 5.7 1.7e-05 24.7 4.2 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SoxE PF06525.6 gi|549456055|ref|YP_008604814.1| - 0.098 11.9 0.3 0.15 11.3 0.2 1.3 1 0 0 1 1 1 0 Sulfocyanin (SoxE) SBP_bac_5 PF00496.17 gi|549456056|ref|YP_008604815.1| - 2.9e-89 299.5 0.5 3.6e-89 299.2 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|549456057|ref|YP_008604816.1| - 2.9e-38 131.2 17.7 2.9e-38 131.2 12.3 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|549456058|ref|YP_008604817.1| - 2.2e-25 89.2 12.7 2.2e-25 89.2 8.8 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|549456058|ref|YP_008604817.1| - 9.8e-06 24.8 0.8 9.8e-06 24.8 0.6 2.9 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|549456059|ref|YP_008604818.1| - 3.6e-28 98.5 0.0 4.7e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|549456059|ref|YP_008604818.1| - 1.1e-19 70.4 0.3 1.9e-19 69.7 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|549456059|ref|YP_008604818.1| - 1.3e-11 45.0 0.0 4.7e-09 36.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|549456059|ref|YP_008604818.1| - 6.3e-05 22.4 0.0 0.00012 21.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|549456059|ref|YP_008604818.1| - 0.0001 21.7 0.0 0.0061 15.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|549456059|ref|YP_008604818.1| - 0.00014 21.1 0.1 0.036 13.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|549456059|ref|YP_008604818.1| - 0.0031 16.6 0.0 0.15 11.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|549456059|ref|YP_008604818.1| - 0.0055 16.8 0.4 0.48 10.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|549456059|ref|YP_008604818.1| - 0.018 15.0 0.9 0.05 13.5 0.6 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|549456059|ref|YP_008604818.1| - 0.02 14.3 0.9 0.32 10.3 0.1 2.1 1 1 0 2 2 2 0 AAA-like domain ATP-synt_ab PF00006.20 gi|549456059|ref|YP_008604818.1| - 0.075 12.5 0.0 2.9 7.3 0.0 2.3 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|549456059|ref|YP_008604818.1| - 0.089 11.6 0.1 0.17 10.7 0.0 1.4 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.4 gi|549456059|ref|YP_008604818.1| - 0.13 10.8 0.4 3.6 6.0 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.22 gi|549456060|ref|YP_008604819.1| - 1.9e-31 109.2 0.0 2.8e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|549456060|ref|YP_008604819.1| - 4.7e-18 65.2 0.5 8.2e-18 64.5 0.4 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|549456060|ref|YP_008604819.1| - 2.1e-08 34.5 0.0 6.1e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|549456060|ref|YP_008604819.1| - 0.0014 18.7 0.7 0.013 15.5 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|549456060|ref|YP_008604819.1| - 0.0096 15.9 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|549456060|ref|YP_008604819.1| - 0.016 14.6 0.1 0.13 11.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|549456060|ref|YP_008604819.1| - 0.062 12.1 0.1 0.11 11.3 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.1 gi|549456060|ref|YP_008604819.1| - 0.067 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain KaiC PF06745.8 gi|549456060|ref|YP_008604819.1| - 0.07 12.2 0.3 0.15 11.1 0.0 1.6 2 0 0 2 2 2 0 KaiC NACHT PF05729.7 gi|549456060|ref|YP_008604819.1| - 0.083 12.5 0.1 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|549456060|ref|YP_008604819.1| - 0.088 11.2 0.1 1 7.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|549456060|ref|YP_008604819.1| - 0.09 12.2 0.1 2 7.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|549456060|ref|YP_008604819.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Lactamase_B PF00753.22 gi|549456061|ref|YP_008604820.1| - 7.8e-09 35.4 1.0 8.8e-08 32.0 0.7 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|549456061|ref|YP_008604820.1| - 0.0024 17.4 0.0 0.0044 16.5 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Thioredoxin_2 PF13098.1 gi|549456061|ref|YP_008604820.1| - 0.045 13.9 0.0 0.092 12.9 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain Pyridoxal_deC PF00282.14 gi|549456062|ref|YP_008604821.1| - 1.8e-17 62.8 0.0 2.5e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|549456062|ref|YP_008604821.1| - 2.4e-07 29.8 0.0 1e-06 27.7 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|549456062|ref|YP_008604821.1| - 0.0074 15.2 0.0 0.031 13.2 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|549456062|ref|YP_008604821.1| - 0.044 12.8 0.0 0.064 12.2 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family MFS_1 PF07690.11 gi|549456063|ref|YP_008604822.1| - 3.7e-22 78.5 34.0 3.7e-22 78.5 23.6 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF3624 PF12292.3 gi|549456064|ref|YP_008604823.1| - 0.17 12.3 1.7 0.41 11.0 1.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) SSP160 PF06933.6 gi|549456064|ref|YP_008604823.1| - 0.56 8.1 14.7 0.91 7.4 10.2 1.3 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 ABC_tran PF00005.22 gi|549456065|ref|YP_008604824.1| - 3.9e-16 59.5 0.0 1.1e-15 58.1 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549456065|ref|YP_008604824.1| - 8e-14 52.2 0.0 3.2e-09 37.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|549456065|ref|YP_008604824.1| - 7.7e-07 28.8 0.2 0.015 14.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain Acetyltransf_1 PF00583.19 gi|549456065|ref|YP_008604824.1| - 1.2e-06 28.4 0.3 4.2e-06 26.7 0.2 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_22 PF13401.1 gi|549456065|ref|YP_008604824.1| - 1.4e-06 28.4 0.0 3e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain Acetyltransf_7 PF13508.1 gi|549456065|ref|YP_008604824.1| - 2.6e-05 24.2 0.0 8.1e-05 22.7 0.0 1.9 2 0 0 2 2 1 1 Acetyltransferase (GNAT) domain AAA_15 PF13175.1 gi|549456065|ref|YP_008604824.1| - 3.4e-05 23.0 0.0 0.018 14.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|549456065|ref|YP_008604824.1| - 0.0004 20.4 1.7 0.0068 16.4 0.2 2.7 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|549456065|ref|YP_008604824.1| - 0.00072 18.8 0.0 0.084 12.0 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|549456065|ref|YP_008604824.1| - 0.0024 17.3 0.2 0.0093 15.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|549456065|ref|YP_008604824.1| - 0.0049 16.3 0.1 0.41 10.0 0.0 2.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family MobB PF03205.9 gi|549456065|ref|YP_008604824.1| - 0.01 15.5 0.2 0.029 14.0 0.2 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|549456065|ref|YP_008604824.1| - 0.012 15.1 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|549456065|ref|YP_008604824.1| - 0.018 14.2 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|549456065|ref|YP_008604824.1| - 0.022 15.5 0.1 0.14 12.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain Acetyltransf_10 PF13673.1 gi|549456065|ref|YP_008604824.1| - 0.022 14.8 0.1 0.058 13.5 0.1 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|549456065|ref|YP_008604824.1| - 0.026 13.8 0.0 0.045 13.0 0.0 1.4 1 0 0 1 1 1 0 GNAT acetyltransferase 2 UPF0079 PF02367.12 gi|549456065|ref|YP_008604824.1| - 0.03 13.9 0.0 0.08 12.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|549456065|ref|YP_008604824.1| - 0.057 13.0 0.5 0.11 12.1 0.3 1.6 1 1 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|549456065|ref|YP_008604824.1| - 0.069 12.5 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|549456065|ref|YP_008604824.1| - 0.069 12.7 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|549456065|ref|YP_008604824.1| - 0.07 13.0 0.0 0.07 13.0 0.0 2.2 3 0 0 3 3 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|549456065|ref|YP_008604824.1| - 0.089 11.4 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_23 PF13476.1 gi|549456065|ref|YP_008604824.1| - 0.096 13.0 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|549456065|ref|YP_008604824.1| - 0.12 12.6 0.1 0.66 10.1 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Dynamin_N PF00350.18 gi|549456065|ref|YP_008604824.1| - 0.18 11.6 0.1 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 Dynamin family NB-ARC PF00931.17 gi|549456065|ref|YP_008604824.1| - 0.19 10.5 0.0 0.59 8.9 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.1 gi|549456065|ref|YP_008604824.1| - 0.2 11.2 2.6 0.19 11.3 0.2 2.1 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|549456065|ref|YP_008604824.1| - 0.34 10.6 3.3 0.98 9.2 0.2 2.9 2 1 0 2 2 2 0 Part of AAA domain Thioredoxin PF00085.15 gi|549456066|ref|YP_008604825.1| - 1e-12 47.6 0.0 1.7e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|549456066|ref|YP_008604825.1| - 3.8e-07 30.2 0.2 5.4e-06 26.5 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain DsbD PF02683.10 gi|549456066|ref|YP_008604825.1| - 0.00042 19.9 21.5 0.0012 18.4 14.9 1.8 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|549456066|ref|YP_008604825.1| - 0.00095 18.9 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.1 gi|549456066|ref|YP_008604825.1| - 0.033 14.2 0.0 0.082 13.0 0.0 1.6 2 0 0 2 2 2 0 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|549456066|ref|YP_008604825.1| - 0.073 13.1 0.0 0.15 12.0 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin_4 PF13462.1 gi|549456066|ref|YP_008604825.1| - 0.23 11.4 0.1 18 5.2 0.1 2.1 1 1 1 2 2 2 0 Thioredoxin Cytochrom_C_asm PF01578.15 gi|549456067|ref|YP_008604826.1| - 5.3e-14 52.2 16.2 5.3e-14 52.2 11.2 4.1 2 1 1 3 3 3 1 Cytochrome C assembly protein DsbC_N PF10411.4 gi|549456068|ref|YP_008604827.1| - 0.012 14.8 1.5 0.74 9.1 0.1 3.0 3 0 0 3 3 3 0 Disulfide bond isomerase protein N-terminus CN_hydrolase PF00795.17 gi|549456069|ref|YP_008604828.1| - 4.5e-18 65.2 0.0 6.2e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF1081 PF06448.6 gi|549456069|ref|YP_008604828.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1081) AhpC-TSA PF00578.16 gi|549456070|ref|YP_008604829.1| - 9.9e-33 112.4 0.0 1.6e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|549456070|ref|YP_008604829.1| - 3.9e-13 49.1 0.0 5.2e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|549456070|ref|YP_008604829.1| - 7.9e-09 35.0 0.0 1.5e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.1 gi|549456070|ref|YP_008604829.1| - 0.006 16.4 0.0 0.013 15.4 0.0 1.5 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Sel1 PF08238.7 gi|549456070|ref|YP_008604829.1| - 0.12 13.0 0.1 0.43 11.2 0.0 1.9 1 0 0 1 1 1 0 Sel1 repeat Lon_C PF05362.8 gi|549456071|ref|YP_008604830.1| - 1.5e-10 40.7 0.1 3.5e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DUF357 PF04010.8 gi|549456072|ref|YP_008604831.1| - 1.1e-19 69.8 2.4 2e-19 69.0 1.7 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|549456072|ref|YP_008604831.1| - 6.7e-09 35.9 0.0 1.4e-08 34.9 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase DUF4398 PF14346.1 gi|549456072|ref|YP_008604831.1| - 0.00049 20.0 0.3 0.0007 19.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) Metallophos_2 PF12850.2 gi|549456073|ref|YP_008604832.1| - 1.5e-13 50.8 0.1 2e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|549456073|ref|YP_008604832.1| - 7.8e-09 35.0 0.1 1.2e-08 34.3 0.1 1.4 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|549456073|ref|YP_008604832.1| - 5.1e-06 26.0 0.7 0.0013 18.2 0.2 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase AMP-binding PF00501.23 gi|549456074|ref|YP_008604833.1| - 2.7e-113 378.4 0.0 3.3e-113 378.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|549456074|ref|YP_008604833.1| - 2.5e-17 63.5 0.6 8.5e-17 61.8 0.4 2.0 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PALP PF00291.20 gi|549456075|ref|YP_008604834.1| - 1.9e-75 253.9 1.2 2.2e-75 253.7 0.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TBPIP PF07106.8 gi|549456076|ref|YP_008604835.1| - 0.087 12.3 1.9 2.4 7.6 0.0 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Ycf54 PF10674.4 gi|549456076|ref|YP_008604835.1| - 0.13 12.4 0.4 0.35 11.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2488) DUF1488 PF07369.6 gi|549456076|ref|YP_008604835.1| - 0.15 11.8 0.4 0.15 11.8 0.3 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1488) Hira PF07569.6 gi|549456076|ref|YP_008604835.1| - 0.3 10.2 2.8 0.33 10.1 0.2 1.9 2 0 0 2 2 2 0 TUP1-like enhancer of split DUF4319 PF14203.1 gi|549456076|ref|YP_008604835.1| - 0.71 9.4 5.5 1.7 8.2 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4319) Adenosine_kin PF04008.9 gi|549456077|ref|YP_008604836.1| - 6.3e-74 246.6 0.1 7.2e-74 246.4 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Peptidase_S9 PF00326.16 gi|549456078|ref|YP_008604837.1| - 9.8e-51 171.9 0.1 1.4e-50 171.4 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|549456078|ref|YP_008604837.1| - 4e-10 39.5 1.1 3.6e-07 29.8 0.3 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_5 PF12695.2 gi|549456078|ref|YP_008604837.1| - 1.5e-09 37.7 0.1 4.2e-09 36.2 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|549456078|ref|YP_008604837.1| - 1.5e-05 23.6 0.7 0.00066 18.2 0.5 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.2 gi|549456078|ref|YP_008604837.1| - 3.7e-05 23.7 0.0 7.7e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family PD40 PF07676.7 gi|549456078|ref|YP_008604837.1| - 6e-05 22.6 0.3 0.00015 21.3 0.2 1.7 1 0 0 1 1 1 1 WD40-like Beta Propeller Repeat Esterase_phd PF10503.4 gi|549456078|ref|YP_008604837.1| - 0.00064 19.0 0.0 0.002 17.4 0.0 1.8 1 0 0 1 1 1 1 Esterase PHB depolymerase DLH PF01738.13 gi|549456078|ref|YP_008604837.1| - 0.041 13.1 0.1 0.15 11.3 0.1 1.8 1 1 0 1 1 1 0 Dienelactone hydrolase family BAAT_C PF08840.6 gi|549456078|ref|YP_008604837.1| - 0.042 13.5 0.1 0.18 11.4 0.0 1.9 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2048 PF09752.4 gi|549456078|ref|YP_008604837.1| - 0.061 12.1 0.0 0.094 11.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) NTP_transferase PF00483.18 gi|549456079|ref|YP_008604838.1| - 1.3e-34 119.6 0.0 1.5e-34 119.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|549456079|ref|YP_008604838.1| - 7.4e-13 48.8 0.0 8.8e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|549456079|ref|YP_008604838.1| - 0.00035 20.1 0.0 0.00052 19.6 0.0 1.3 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Lactamase_B_2 PF12706.2 gi|549456082|ref|YP_008604841.1| - 2.2e-08 33.8 0.0 9.8e-07 28.5 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DRMBL PF07522.9 gi|549456082|ref|YP_008604841.1| - 8.7e-07 28.9 0.0 5.7e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 DNA repair metallo-beta-lactamase Lactamase_B PF00753.22 gi|549456082|ref|YP_008604841.1| - 7.1e-06 25.8 0.3 1.5e-05 24.7 0.2 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|549456082|ref|YP_008604841.1| - 0.0036 17.0 0.0 0.0073 16.0 0.0 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Pec_lyase_N PF04431.8 gi|549456082|ref|YP_008604841.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Pectate lyase, N terminus GlutR_N PF05201.10 gi|549456083|ref|YP_008604842.1| - 1.5e-33 115.5 0.0 3.9e-33 114.2 0.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|549456083|ref|YP_008604842.1| - 9.4e-23 80.7 0.0 1.6e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|549456083|ref|YP_008604842.1| - 4e-08 33.1 0.7 9.9e-08 31.8 0.5 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|549456083|ref|YP_008604842.1| - 0.0049 17.3 0.0 0.012 16.1 0.0 1.8 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DUF3354 PF11834.3 gi|549456083|ref|YP_008604842.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3354) Porphobil_deam PF01379.15 gi|549456084|ref|YP_008604843.1| - 9.3e-53 178.3 0.0 1.2e-52 178.0 0.0 1.0 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|549456084|ref|YP_008604843.1| - 1.4e-09 37.9 0.0 2.5e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.16 gi|549456085|ref|YP_008604844.1| - 6e-64 216.0 0.0 9.1e-64 215.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|549456085|ref|YP_008604844.1| - 5.2e-05 22.3 0.0 6.9e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II ALAD PF00490.16 gi|549456086|ref|YP_008604845.1| - 2.5e-127 424.2 0.0 2.8e-127 424.0 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase tRNA-synt_2d PF01409.15 gi|549456087|ref|YP_008604846.1| - 6.4e-83 277.7 0.0 8.1e-83 277.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|549456087|ref|YP_008604846.1| - 3.3e-05 22.8 0.1 0.64 8.7 0.0 3.5 4 0 0 4 4 4 2 tRNA synthetases class II (D, K and N) tRNA-synt_His PF13393.1 gi|549456087|ref|YP_008604846.1| - 3.4e-05 23.0 1.0 0.17 10.8 0.0 3.2 3 0 0 3 3 3 2 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|549456087|ref|YP_008604846.1| - 0.00049 19.7 0.0 0.0092 15.5 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) MarR_2 PF12802.2 gi|549456087|ref|YP_008604846.1| - 0.00098 18.7 0.2 0.00098 18.7 0.1 3.8 4 0 0 4 4 4 1 MarR family HTH_27 PF13463.1 gi|549456087|ref|YP_008604846.1| - 0.022 15.0 1.4 0.44 10.8 0.1 3.1 2 1 0 3 3 3 0 Winged helix DNA-binding domain TetR_N PF00440.18 gi|549456087|ref|YP_008604846.1| - 0.047 13.3 0.8 0.15 11.7 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_IclR PF09339.5 gi|549456087|ref|YP_008604846.1| - 0.073 12.6 0.6 0.34 10.5 0.1 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|549456087|ref|YP_008604846.1| - 0.087 12.6 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix B5 PF03484.10 gi|549456088|ref|YP_008604847.1| - 2.3e-20 72.1 0.0 3.7e-16 58.6 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|549456088|ref|YP_008604847.1| - 6.6e-06 25.6 0.0 1.4e-05 24.6 0.0 1.5 1 1 0 1 1 1 1 B3/4 domain GCHY-1 PF02649.9 gi|549456089|ref|YP_008604848.1| - 3.3e-46 157.7 0.0 3.8e-46 157.5 0.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.13 gi|549456089|ref|YP_008604848.1| - 5.7e-05 23.2 0.0 0.00013 22.0 0.0 1.6 2 0 0 2 2 2 1 Dihydroneopterin aldolase BON PF04972.12 gi|549456089|ref|YP_008604848.1| - 0.028 14.1 0.3 0.09 12.5 0.0 2.0 2 0 0 2 2 2 0 BON domain APH PF01636.18 gi|549456090|ref|YP_008604849.1| - 1.6e-12 47.6 1.9 3.1e-12 46.7 1.3 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family Jag_N PF14804.1 gi|549456090|ref|YP_008604849.1| - 0.038 13.9 0.1 0.086 12.8 0.0 1.6 1 0 0 1 1 1 0 Jag N-terminus DUF2797 PF10977.3 gi|549456091|ref|YP_008604850.1| - 1.3e-10 41.3 0.2 1.8e-10 40.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) DUF3989 PF13150.1 gi|549456092|ref|YP_008604851.1| - 0.0056 16.1 1.3 0.0059 16.0 0.5 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3989) FtsX PF02687.16 gi|549456092|ref|YP_008604851.1| - 0.019 14.7 2.5 0.022 14.5 1.7 1.0 1 0 0 1 1 1 0 FtsX-like permease family DUF2878 PF11086.3 gi|549456092|ref|YP_008604851.1| - 0.053 13.5 0.9 0.06 13.3 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2878) DUF4492 PF14899.1 gi|549456092|ref|YP_008604851.1| - 0.083 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4492) DUF1240 PF06836.7 gi|549456092|ref|YP_008604851.1| - 0.086 13.0 0.1 0.1 12.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1240) DUF202 PF02656.10 gi|549456092|ref|YP_008604851.1| - 1.1 9.5 6.1 2.2 8.5 4.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF3040 PF11239.3 gi|549456092|ref|YP_008604851.1| - 3.9 7.5 6.7 2.2 8.3 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) CbtB PF09489.5 gi|549456092|ref|YP_008604851.1| - 4.5 7.2 9.8 6.3 6.7 1.5 2.1 1 1 1 2 2 2 0 Probable cobalt transporter subunit (CbtB) DUF3397 PF11877.3 gi|549456093|ref|YP_008604852.1| - 0.34 10.9 3.3 0.27 11.2 0.3 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3397) ArgJ PF01960.13 gi|549456095|ref|YP_008604854.1| - 0.095 11.0 0.1 0.11 10.8 0.1 1.0 1 0 0 1 1 1 0 ArgJ family DUF1206 PF06724.6 gi|549456095|ref|YP_008604854.1| - 1.1 9.0 7.7 0.33 10.7 1.3 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) PALP PF00291.20 gi|549456096|ref|YP_008604855.1| - 1.1e-36 126.7 0.2 1.3e-36 126.3 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme tRNA-synt_1c PF00749.16 gi|549456098|ref|YP_008604857.1| - 9.6e-72 241.2 0.0 1.2e-71 240.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|549456098|ref|YP_008604857.1| - 1.2e-21 77.1 0.0 1.9e-21 76.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF447 PF04289.7 gi|549456099|ref|YP_008604858.1| - 0.00067 19.2 0.0 0.0013 18.3 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF447) MAF_flag10 PF01973.13 gi|549456100|ref|YP_008604859.1| - 0.0001 21.8 0.0 0.00014 21.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Ribosomal_L35Ae PF01247.13 gi|549456101|ref|YP_008604860.1| - 1.1e-12 47.5 0.9 3.7e-12 45.8 0.6 1.7 1 1 0 1 1 1 1 Ribosomal protein L35Ae GDNF PF02351.11 gi|549456102|ref|YP_008604861.1| - 0.069 13.6 1.5 10 6.6 0.0 2.3 2 0 0 2 2 2 0 GDNF/GAS1 domain ATP-synt_C PF00137.16 gi|549456103|ref|YP_008604862.1| - 9.2e-21 73.5 16.8 9.2e-21 73.5 11.7 1.8 2 0 0 2 2 2 1 ATP synthase subunit C TrbC PF04956.8 gi|549456103|ref|YP_008604862.1| - 0.0051 16.8 5.5 0.0062 16.5 3.8 1.3 1 1 0 1 1 1 1 TrbC/VIRB2 family Rhomboid PF01694.17 gi|549456103|ref|YP_008604862.1| - 0.97 9.4 7.2 0.62 10.0 3.9 1.5 1 1 0 1 1 1 0 Rhomboid family Yip1 PF04893.12 gi|549456103|ref|YP_008604862.1| - 3.9 6.9 11.4 4.8 6.6 7.9 1.1 1 0 0 1 1 1 0 Yip1 domain HGTP_anticodon PF03129.15 gi|549456104|ref|YP_008604863.1| - 2.7e-21 75.3 0.0 4.6e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|549456104|ref|YP_008604863.1| - 8.2e-21 74.3 0.4 1.4e-20 73.6 0.3 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|549456104|ref|YP_008604863.1| - 3.9e-15 55.5 0.1 6.5e-15 54.7 0.1 1.4 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Rad50_zn_hook PF04423.9 gi|549456104|ref|YP_008604863.1| - 0.26 10.7 1.5 0.62 9.5 1.1 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif Ribosomal_S26e PF01283.14 gi|549456105|ref|YP_008604864.1| - 3.8e-31 107.6 3.0 4.4e-31 107.4 2.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e DZR PF12773.2 gi|549456105|ref|YP_008604864.1| - 0.025 14.3 1.3 0.11 12.2 0.1 2.0 2 0 0 2 2 2 0 Double zinc ribbon UPF0547 PF10571.4 gi|549456105|ref|YP_008604864.1| - 0.054 13.2 0.7 0.097 12.3 0.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-C2HC_2 PF13913.1 gi|549456105|ref|YP_008604864.1| - 0.064 12.9 0.6 0.17 11.6 0.1 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Sgf11 PF08209.6 gi|549456105|ref|YP_008604864.1| - 0.27 10.5 0.1 0.27 10.5 0.1 1.9 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-dskA_traR PF01258.12 gi|549456105|ref|YP_008604864.1| - 0.43 10.3 3.6 7.3 6.4 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.1 gi|549456105|ref|YP_008604864.1| - 5.1 6.4 6.6 0.21 10.8 0.5 1.8 2 0 0 2 2 2 0 zinc-ribbon domain Mrr_cat PF04471.7 gi|549456107|ref|YP_008604866.1| - 0.00025 20.8 0.1 0.00046 19.9 0.0 1.5 1 1 0 1 1 1 1 Restriction endonuclease HTH_1 PF00126.22 gi|549456107|ref|YP_008604866.1| - 0.00034 20.2 0.9 0.002 17.8 0.3 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family UPF0102 PF02021.12 gi|549456107|ref|YP_008604866.1| - 0.0009 19.1 0.1 0.0021 17.9 0.1 1.7 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 DUF91 PF01939.11 gi|549456107|ref|YP_008604866.1| - 0.0019 17.3 1.0 0.0029 16.8 0.2 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF91 HTH_24 PF13412.1 gi|549456107|ref|YP_008604866.1| - 0.0049 16.2 0.4 0.019 14.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Hjc PF01870.13 gi|549456107|ref|YP_008604866.1| - 0.011 15.2 0.1 0.021 14.3 0.1 1.4 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) gag-asp_proteas PF13975.1 gi|549456107|ref|YP_008604866.1| - 0.019 14.7 0.4 14 5.6 0.0 3.1 2 1 1 3 3 3 0 gag-polyprotein putative aspartyl protease Clp_N PF02861.15 gi|549456107|ref|YP_008604866.1| - 0.019 14.8 1.3 21 5.1 0.0 3.6 3 1 0 3 3 3 0 Clp amino terminal domain HTH_AsnC-type PF13404.1 gi|549456107|ref|YP_008604866.1| - 0.082 12.4 0.7 0.082 12.4 0.5 3.1 3 1 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|549456107|ref|YP_008604866.1| - 0.086 12.6 0.3 0.21 11.4 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4143 PF13635.1 gi|549456107|ref|YP_008604866.1| - 0.13 12.4 0.1 0.3 11.3 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4143) HTH_28 PF13518.1 gi|549456107|ref|YP_008604866.1| - 0.15 12.0 0.6 0.66 10.0 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain NMD3 PF04981.8 gi|549456109|ref|YP_008604868.1| - 1.6e-37 128.9 0.0 1.8e-37 128.7 0.0 1.0 1 0 0 1 1 1 1 NMD3 family DUF35_N PF12172.3 gi|549456109|ref|YP_008604868.1| - 1.6 8.7 6.0 4.4 7.3 0.1 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L37e PF01907.14 gi|549456109|ref|YP_008604868.1| - 5.4 6.8 8.4 1.8 8.4 0.1 3.0 3 0 0 3 3 3 0 Ribosomal protein L37e DUF402 PF04167.8 gi|549456112|ref|YP_008604871.1| - 1.8e-18 66.1 0.0 3e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|549456112|ref|YP_008604871.1| - 0.036 13.2 0.0 0.05 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease E/G family UPF0147 PF03685.8 gi|549456113|ref|YP_008604872.1| - 6.3e-36 122.1 0.4 7e-36 121.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HEAT_PBS PF03130.11 gi|549456113|ref|YP_008604872.1| - 0.0087 16.4 0.7 0.02 15.3 0.5 1.7 1 1 0 1 1 1 1 PBS lyase HEAT-like repeat HEAT_2 PF13646.1 gi|549456113|ref|YP_008604872.1| - 0.012 15.8 0.3 0.034 14.4 0.2 1.6 1 1 0 1 1 1 0 HEAT repeats UPF0253 PF06786.7 gi|549456113|ref|YP_008604872.1| - 0.043 13.9 0.1 3 8.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) SAM_adeno_trans PF01887.11 gi|549456114|ref|YP_008604873.1| - 4.7e-84 281.4 0.0 5.4e-84 281.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase BPL_LplA_LipB PF03099.14 gi|549456116|ref|YP_008604875.1| - 2e-20 73.0 0.1 3.6e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_LplA_LipB PF03099.14 gi|549456117|ref|YP_008604876.1| - 3.6e-20 72.2 0.0 5.5e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Radical_SAM PF04055.16 gi|549456118|ref|YP_008604877.1| - 4.5e-12 46.4 0.0 1.1e-11 45.1 0.0 1.6 1 1 1 2 2 2 1 Radical SAM superfamily Biotin_lipoyl PF00364.17 gi|549456119|ref|YP_008604878.1| - 1.7e-14 53.1 3.7 2.3e-14 52.7 2.6 1.1 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|549456119|ref|YP_008604878.1| - 1.9e-06 27.4 4.1 0.00041 19.9 0.1 2.2 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.1 gi|549456119|ref|YP_008604878.1| - 1.5e-05 24.6 0.4 2e-05 24.2 0.3 1.2 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.14 gi|549456119|ref|YP_008604878.1| - 0.00018 21.1 2.3 0.00023 20.8 1.2 1.5 1 1 1 2 2 2 1 Glycine cleavage H-protein QRPTase_N PF02749.11 gi|549456119|ref|YP_008604878.1| - 0.00031 20.4 0.3 0.23 11.3 0.0 2.1 1 1 1 2 2 2 2 Quinolinate phosphoribosyl transferase, N-terminal domain HlyD_2 PF12700.2 gi|549456119|ref|YP_008604878.1| - 0.0029 16.7 2.9 0.34 10.0 0.2 2.0 1 1 1 2 2 2 2 HlyD family secretion protein NQRA PF05896.6 gi|549456119|ref|YP_008604878.1| - 0.014 14.5 0.5 0.016 14.4 0.3 1.0 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HlyD_3 PF13437.1 gi|549456119|ref|YP_008604878.1| - 0.014 15.6 1.8 0.22 11.8 0.3 2.0 1 1 1 2 2 2 0 HlyD family secretion protein DUF2118 PF09891.4 gi|549456119|ref|YP_008604878.1| - 0.034 13.8 0.6 0.041 13.5 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) HlyD PF00529.15 gi|549456119|ref|YP_008604878.1| - 0.054 12.7 2.0 0.085 12.1 0.2 1.8 1 1 1 2 2 2 0 HlyD family secretion protein PYNP_C PF07831.8 gi|549456119|ref|YP_008604878.1| - 0.15 11.5 0.1 0.15 11.5 0.1 1.5 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain OMPdecase PF00215.19 gi|549456120|ref|YP_008604879.1| - 4.9e-28 98.0 0.0 6.1e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pribosyltran PF00156.22 gi|549456121|ref|YP_008604880.1| - 2.4e-15 56.3 0.2 7.2e-15 54.8 0.1 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|549456121|ref|YP_008604880.1| - 0.0078 15.4 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Dirigent PF03018.9 gi|549456121|ref|YP_008604880.1| - 0.11 11.9 0.1 0.23 10.9 0.1 1.5 1 0 0 1 1 1 0 Dirigent-like protein PRTase_2 PF15609.1 gi|549456121|ref|YP_008604880.1| - 0.11 11.7 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Isochorismatase PF00857.15 gi|549456122|ref|YP_008604881.1| - 1.4e-43 148.8 0.0 1.7e-43 148.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family MobB PF03205.9 gi|549456122|ref|YP_008604881.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CCG PF02754.11 gi|549456123|ref|YP_008604882.1| - 1.9e-10 40.5 0.0 6.6e-09 35.6 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Acyl-CoA_dh_1 PF00441.19 gi|549456124|ref|YP_008604883.1| - 3.2e-33 114.9 2.7 5e-33 114.3 1.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|549456124|ref|YP_008604883.1| - 3e-16 58.6 0.1 5.3e-16 57.8 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|549456124|ref|YP_008604883.1| - 8.4e-16 58.4 2.2 1.2e-15 57.9 1.5 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|549456124|ref|YP_008604883.1| - 1.9e-14 54.1 0.6 5e-14 52.8 0.0 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain NfeD PF01957.13 gi|549456125|ref|YP_008604884.1| - 3.2e-10 40.3 7.7 3.7e-10 40.1 5.3 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding GTP_EFTU_D2 PF03144.20 gi|549456125|ref|YP_008604884.1| - 0.048 13.7 0.3 0.12 12.5 0.2 1.7 1 0 0 1 1 1 0 Elongation factor Tu domain 2 KOW PF00467.24 gi|549456125|ref|YP_008604884.1| - 0.078 12.7 0.5 2.4 8.0 0.0 2.5 2 0 0 2 2 2 0 KOW motif Antitoxin-MazE PF04014.13 gi|549456125|ref|YP_008604884.1| - 0.47 10.2 2.3 19 5.1 0.5 2.6 1 1 1 2 2 2 0 Antidote-toxin recognition MazE Prok-JAB PF14464.1 gi|549456126|ref|YP_008604885.1| - 0.045 13.3 0.1 0.22 11.0 0.0 2.0 2 0 0 2 2 2 0 Prokaryotic homologs of the JAB domain HD_3 PF13023.1 gi|549456127|ref|YP_008604886.1| - 8.5e-17 61.3 0.0 1.1e-16 61.0 0.0 1.1 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|549456127|ref|YP_008604886.1| - 2.6e-06 27.4 0.2 8e-06 25.8 0.1 1.8 1 1 0 1 1 1 1 HD domain HD_2 PF12917.2 gi|549456127|ref|YP_008604886.1| - 0.047 13.4 0.0 0.087 12.5 0.0 1.4 1 1 0 1 1 1 0 HD containing hydrolase-like enzyme Abhydrolase_6 PF12697.2 gi|549456129|ref|YP_008604888.1| - 3.8e-33 115.2 6.2 4.3e-33 115.0 4.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|549456129|ref|YP_008604888.1| - 1.2e-18 67.2 0.4 1.6e-18 66.8 0.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|549456129|ref|YP_008604888.1| - 4.1e-11 42.8 0.0 1.3e-07 31.4 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|549456129|ref|YP_008604888.1| - 8.8e-06 25.4 0.4 0.00024 20.9 0.0 2.9 3 0 0 3 3 3 1 Putative lysophospholipase TraB PF01963.12 gi|549456129|ref|YP_008604888.1| - 0.0043 16.5 0.3 0.0065 15.9 0.2 1.2 1 0 0 1 1 1 1 TraB family Peripla_BP_6 PF13458.1 gi|549456129|ref|YP_008604888.1| - 0.015 14.6 0.1 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein Thioesterase PF00975.15 gi|549456129|ref|YP_008604888.1| - 0.027 14.7 0.5 0.46 10.6 0.3 2.0 1 1 0 1 1 1 0 Thioesterase domain Abhydrolase_2 PF02230.11 gi|549456129|ref|YP_008604888.1| - 0.048 13.1 0.1 5.9 6.2 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Esterase PF00756.15 gi|549456129|ref|YP_008604888.1| - 0.12 11.7 0.1 10 5.4 0.0 2.3 1 1 1 2 2 2 0 Putative esterase Carb_kinase PF01256.12 gi|549456130|ref|YP_008604889.1| - 7.2e-42 143.3 0.2 9.7e-42 142.9 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|549456130|ref|YP_008604889.1| - 3.4e-40 137.4 0.5 5.5e-40 136.7 0.4 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.7 gi|549456130|ref|YP_008604889.1| - 0.091 11.9 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase KR PF08659.5 gi|549456130|ref|YP_008604889.1| - 0.26 10.9 3.4 0.33 10.6 0.7 2.3 2 0 0 2 2 2 0 KR domain Fcf1 PF04900.7 gi|549456131|ref|YP_008604890.1| - 1.8e-15 56.8 0.0 2.3e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 Fcf1 NYN_YacP PF05991.6 gi|549456131|ref|YP_008604890.1| - 3.6e-05 23.5 0.0 5.1e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 YacP-like NYN domain 5_3_exonuc_N PF02739.11 gi|549456131|ref|YP_008604890.1| - 0.00025 20.4 0.0 0.00038 19.8 0.0 1.3 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain PIN PF01850.16 gi|549456131|ref|YP_008604890.1| - 0.00027 21.2 0.1 0.00049 20.4 0.1 1.4 1 1 0 1 1 1 1 PIN domain Nitro_FeMo-Co PF02579.12 gi|549456131|ref|YP_008604890.1| - 0.069 13.2 0.0 0.65 10.1 0.0 2.3 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor NTP_transf_3 PF12804.2 gi|549456131|ref|YP_008604890.1| - 0.082 12.9 0.8 0.39 10.7 0.4 2.0 1 1 1 2 2 2 0 MobA-like NTP transferase domain GTP_EFTU PF00009.22 gi|549456132|ref|YP_008604891.1| - 1.3e-41 142.1 0.0 2e-41 141.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|549456132|ref|YP_008604891.1| - 2.1e-32 110.9 0.6 4.2e-32 110.0 0.4 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|549456132|ref|YP_008604891.1| - 2e-07 31.0 3.9 4.9e-07 29.7 1.8 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|549456132|ref|YP_008604891.1| - 0.001 18.9 0.0 0.0018 18.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|549456132|ref|YP_008604891.1| - 0.011 15.1 1.6 0.46 9.9 0.0 2.6 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|549456132|ref|YP_008604891.1| - 0.041 13.1 0.8 3.1 7.0 0.0 2.6 2 0 0 2 2 2 0 Ferrous iron transport protein B Miro PF08477.8 gi|549456132|ref|YP_008604891.1| - 0.074 13.5 0.0 0.32 11.5 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|549456132|ref|YP_008604891.1| - 0.076 12.8 0.0 0.2 11.4 0.0 1.6 1 1 0 2 2 2 0 Dynamin family Ribosomal_S6e PF01092.14 gi|549456133|ref|YP_008604892.1| - 2.2e-22 79.0 0.2 6.8e-22 77.4 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein S6e DUF2922 PF11148.3 gi|549456133|ref|YP_008604892.1| - 0.031 13.9 0.1 0.08 12.6 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2922) GTP_EFTU PF00009.22 gi|549456134|ref|YP_008604893.1| - 8.2e-32 110.1 0.0 3.9e-31 107.9 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.1 gi|549456134|ref|YP_008604893.1| - 1e-24 85.9 0.1 1e-24 85.9 0.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.3 gi|549456134|ref|YP_008604893.1| - 1.3e-23 82.9 0.0 2.6e-23 81.9 0.0 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|549456134|ref|YP_008604893.1| - 2.4e-14 53.1 3.7 7e-13 48.4 0.3 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|549456134|ref|YP_008604893.1| - 2e-05 24.4 0.0 4.7e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase MobB PF03205.9 gi|549456134|ref|YP_008604893.1| - 0.0082 15.8 0.3 0.054 13.2 0.1 2.4 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|549456134|ref|YP_008604893.1| - 0.01 16.3 0.0 0.029 14.8 0.0 1.8 2 0 0 2 2 2 1 Miro-like protein AAA_22 PF13401.1 gi|549456134|ref|YP_008604893.1| - 0.015 15.4 0.0 0.11 12.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain DAO PF01266.19 gi|549456134|ref|YP_008604893.1| - 0.018 13.9 0.4 0.04 12.8 0.3 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase PduV-EutP PF10662.4 gi|549456134|ref|YP_008604893.1| - 0.039 13.4 0.0 1.3 8.5 0.0 3.0 4 0 0 4 4 3 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|549456134|ref|YP_008604893.1| - 0.046 13.2 0.0 0.22 11.0 0.0 2.1 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Arf PF00025.16 gi|549456134|ref|YP_008604893.1| - 0.051 12.8 0.0 19 4.4 0.0 3.2 2 1 0 2 2 2 0 ADP-ribosylation factor family Ras PF00071.17 gi|549456134|ref|YP_008604893.1| - 0.079 12.3 0.0 0.94 8.8 0.0 2.7 2 1 0 2 2 2 0 Ras family Dynamin_N PF00350.18 gi|549456134|ref|YP_008604893.1| - 0.089 12.6 0.0 0.99 9.1 0.0 2.3 2 0 0 2 2 2 0 Dynamin family AAA_19 PF13245.1 gi|549456134|ref|YP_008604893.1| - 0.25 11.1 3.5 4.7 7.0 0.2 2.8 3 0 0 3 3 2 0 Part of AAA domain NDK PF00334.14 gi|549456135|ref|YP_008604894.1| - 7.1e-57 190.9 0.0 8e-57 190.8 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase LysE PF01810.13 gi|549456136|ref|YP_008604895.1| - 2.1e-18 66.3 15.9 2.4e-18 66.1 11.0 1.0 1 0 0 1 1 1 1 LysE type translocator Ribosomal_L24e PF01246.15 gi|549456137|ref|YP_008604896.1| - 4.1e-20 71.4 0.9 4.7e-20 71.2 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|549456137|ref|YP_008604896.1| - 9e-06 25.2 2.4 1.5e-05 24.5 1.7 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.4 gi|549456137|ref|YP_008604896.1| - 0.00047 19.9 1.5 0.039 13.7 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ta0938 PF11494.3 gi|549456137|ref|YP_008604896.1| - 0.0083 16.2 0.0 0.0083 16.2 0.0 1.1 1 0 0 1 1 1 1 Ta0938 YHS PF04945.8 gi|549456137|ref|YP_008604896.1| - 0.012 15.4 0.2 0.016 15.0 0.2 1.2 1 0 0 1 1 1 0 YHS domain Arc_trans_TRASH PF08394.5 gi|549456137|ref|YP_008604896.1| - 0.062 13.4 0.4 0.1 12.7 0.3 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain Phi-29_GP4 PF05464.6 gi|549456137|ref|YP_008604896.1| - 0.07 13.0 0.0 0.083 12.7 0.0 1.1 1 0 0 1 1 1 0 Phi-29-like late genes activator (early protein GP4) DUF581 PF04570.9 gi|549456137|ref|YP_008604896.1| - 0.11 11.7 0.2 0.18 11.0 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF581) RPAP2_Rtr1 PF04181.8 gi|549456137|ref|YP_008604896.1| - 0.14 12.3 0.8 0.14 12.2 0.6 1.3 1 1 0 1 1 1 0 Rtr1/RPAP2 family zf-HIT PF04438.11 gi|549456137|ref|YP_008604896.1| - 2.8 7.6 6.8 43 3.8 4.7 2.1 1 1 0 1 1 1 0 HIT zinc finger zf-C4_ClpX PF06689.8 gi|549456137|ref|YP_008604896.1| - 5.2 6.6 5.4 0.39 10.2 0.4 1.6 2 0 0 2 2 2 0 ClpX C4-type zinc finger Ribosomal_S28e PF01200.13 gi|549456138|ref|YP_008604897.1| - 2.2e-31 107.3 3.9 2.6e-31 107.1 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|549456138|ref|YP_008604897.1| - 0.024 14.3 0.9 0.77 9.5 0.1 2.9 2 1 0 2 2 2 0 KOW motif SCFA_trans PF02667.9 gi|549456139|ref|YP_008604898.1| - 5.5e-146 486.8 15.4 6.2e-146 486.7 10.7 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter ABG_transport PF03806.8 gi|549456139|ref|YP_008604898.1| - 6.4e-07 27.7 2.1 1.6e-06 26.4 1.4 1.7 1 0 0 1 1 1 1 AbgT putative transporter family DcuC PF03606.10 gi|549456139|ref|YP_008604898.1| - 2.4e-05 22.7 5.9 2.4e-05 22.7 4.1 2.0 2 1 0 2 2 2 1 C4-dicarboxylate anaerobic carrier BRI3BP PF14965.1 gi|549456139|ref|YP_008604898.1| - 0.015 14.6 0.3 0.043 13.1 0.2 1.7 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Thiolase_C PF02803.13 gi|549456141|ref|YP_008604900.1| - 0.0086 15.4 0.0 2.1 7.8 0.0 2.8 3 0 0 3 3 3 2 Thiolase, C-terminal domain DUF35_N PF12172.3 gi|549456142|ref|YP_008604901.1| - 1.3e-09 37.7 5.8 1.3e-09 37.7 4.0 1.8 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|549456142|ref|YP_008604901.1| - 2.7e-09 37.1 0.6 4.7e-09 36.3 0.4 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain zf-ribbon_3 PF13248.1 gi|549456142|ref|YP_008604901.1| - 0.0062 15.7 2.4 0.013 14.7 1.7 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|549456142|ref|YP_008604901.1| - 0.019 14.7 0.2 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|549456142|ref|YP_008604901.1| - 0.094 12.2 2.4 0.21 11.1 1.7 1.6 1 0 0 1 1 1 0 zinc-ribbon domain NMD3 PF04981.8 gi|549456142|ref|YP_008604901.1| - 0.15 11.1 0.1 0.21 10.7 0.1 1.2 1 0 0 1 1 1 0 NMD3 family DUF35 PF01796.12 gi|549456143|ref|YP_008604902.1| - 1.9e-10 40.8 0.4 3.8e-10 39.8 0.3 1.5 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|549456143|ref|YP_008604902.1| - 6.5e-05 22.7 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Helicase_RecD PF05127.9 gi|549456144|ref|YP_008604903.1| - 1.5e-54 184.2 0.0 3.8e-54 182.9 0.0 1.7 2 0 0 2 2 2 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|549456144|ref|YP_008604903.1| - 9.3e-49 165.4 0.0 1.1e-47 161.9 0.0 2.5 2 1 0 2 2 2 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|549456144|ref|YP_008604903.1| - 4.2e-28 96.8 0.0 9.2e-28 95.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|549456144|ref|YP_008604903.1| - 2.8e-10 40.1 0.0 5.8e-09 35.9 0.0 2.4 2 0 0 2 2 2 1 Possible tRNA binding domain Acetyltransf_7 PF13508.1 gi|549456144|ref|YP_008604903.1| - 2.6e-08 33.9 0.0 7.2e-08 32.4 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|549456144|ref|YP_008604903.1| - 1.4e-06 28.2 0.1 5.4e-06 26.3 0.1 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|549456144|ref|YP_008604903.1| - 0.00028 20.7 0.0 0.011 15.5 0.0 2.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Sigma70_r4_2 PF08281.7 gi|549456144|ref|YP_008604903.1| - 0.00044 19.6 0.0 0.0022 17.4 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 Sua5_yciO_yrdC PF01300.13 gi|549456145|ref|YP_008604904.1| - 2.5e-61 206.0 0.0 4.5e-61 205.2 0.0 1.4 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.8 gi|549456145|ref|YP_008604904.1| - 6.4e-27 94.1 0.0 1.2e-26 93.2 0.0 1.4 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Phos_pyr_kin PF08543.7 gi|549456146|ref|YP_008604905.1| - 5.6e-97 323.7 2.0 7.1e-97 323.4 1.4 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|549456146|ref|YP_008604905.1| - 7.3e-61 204.4 0.1 2.5e-60 202.7 0.0 1.9 2 0 0 2 2 2 1 Putative aldolase PfkB PF00294.19 gi|549456146|ref|YP_008604905.1| - 8.5e-14 51.3 1.1 1.2e-13 50.8 0.7 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase ABC_tran PF00005.22 gi|549456148|ref|YP_008604907.1| - 1.8e-12 47.7 0.1 3.7e-11 43.4 0.1 2.2 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549456148|ref|YP_008604907.1| - 9.2e-09 35.6 0.0 0.00042 20.3 0.1 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|549456148|ref|YP_008604907.1| - 0.00012 21.5 0.3 0.00023 20.6 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|549456148|ref|YP_008604907.1| - 0.00015 21.4 0.9 0.00042 20.0 0.6 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|549456148|ref|YP_008604907.1| - 0.00033 20.7 0.6 0.00075 19.5 0.4 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|549456148|ref|YP_008604907.1| - 0.0012 19.2 0.0 0.0017 18.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|549456148|ref|YP_008604907.1| - 0.0022 17.2 0.0 0.031 13.4 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|549456148|ref|YP_008604907.1| - 0.0087 14.6 0.1 0.012 14.1 0.1 1.1 1 0 0 1 1 1 1 Predicted ATPase of the ABC class DUF3584 PF12128.3 gi|549456148|ref|YP_008604907.1| - 0.01 13.2 0.1 0.013 12.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_30 PF13604.1 gi|549456148|ref|YP_008604907.1| - 0.022 14.3 0.1 0.033 13.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|549456148|ref|YP_008604907.1| - 0.024 14.3 0.3 0.13 11.9 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|549456148|ref|YP_008604907.1| - 0.03 14.4 0.1 0.049 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|549456148|ref|YP_008604907.1| - 0.034 14.6 0.0 0.052 14.0 0.0 1.2 1 0 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|549456148|ref|YP_008604907.1| - 0.041 13.5 0.3 0.062 12.9 0.2 1.3 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|549456148|ref|YP_008604907.1| - 0.049 14.4 0.1 0.11 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|549456148|ref|YP_008604907.1| - 0.055 12.8 0.2 0.11 11.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|549456148|ref|YP_008604907.1| - 0.062 12.7 0.3 0.097 12.1 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|549456148|ref|YP_008604907.1| - 0.1 12.0 0.1 0.16 11.4 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|549456148|ref|YP_008604907.1| - 0.13 12.1 0.1 0.18 11.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|549456148|ref|YP_008604907.1| - 0.16 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|549456148|ref|YP_008604907.1| - 0.2 11.0 0.5 0.3 10.5 0.3 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|549456148|ref|YP_008604907.1| - 0.22 11.4 0.9 0.47 10.3 0.2 1.8 1 1 1 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|549456148|ref|YP_008604907.1| - 0.24 9.7 0.2 0.38 9.1 0.0 1.3 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|549456149|ref|YP_008604908.1| - 1.4e-17 64.2 0.0 2.3e-17 63.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549456149|ref|YP_008604908.1| - 9.8e-07 29.0 0.1 0.019 14.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|549456149|ref|YP_008604908.1| - 0.00082 18.8 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|549456149|ref|YP_008604908.1| - 0.0018 18.6 0.0 0.0027 18.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|549456149|ref|YP_008604908.1| - 0.0058 16.0 0.1 0.012 15.0 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|549456149|ref|YP_008604908.1| - 0.036 13.8 0.8 0.036 13.8 0.6 2.4 3 0 0 3 3 3 0 Part of AAA domain T2SE PF00437.15 gi|549456149|ref|YP_008604908.1| - 0.086 11.7 0.3 0.13 11.1 0.2 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|549456149|ref|YP_008604908.1| - 0.11 12.4 0.0 0.89 9.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|549456149|ref|YP_008604908.1| - 0.18 10.3 1.4 2.3 6.7 0.2 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|549456150|ref|YP_008604909.1| - 0.0075 16.2 0.0 0.01 15.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|549456150|ref|YP_008604909.1| - 0.0084 15.5 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_5 PF07728.9 gi|549456150|ref|YP_008604909.1| - 0.029 14.0 0.1 0.076 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF853 PF05872.7 gi|549456150|ref|YP_008604909.1| - 0.067 11.5 0.0 0.093 11.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) CbiA PF01656.18 gi|549456150|ref|YP_008604909.1| - 0.088 12.2 0.0 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Glyco_transf_21 PF13506.1 gi|549456150|ref|YP_008604909.1| - 0.12 11.6 0.0 0.22 10.7 0.0 1.4 2 0 0 2 2 2 0 Glycosyl transferase family 21 ThiW PF09512.5 gi|549456151|ref|YP_008604910.1| - 9.7e-44 148.8 16.7 1.1e-43 148.6 11.5 1.0 1 0 0 1 1 1 1 Thiamine-precursor transporter protein (ThiW) DUF3816 PF12822.2 gi|549456151|ref|YP_008604910.1| - 0.00039 20.3 14.8 0.00057 19.8 10.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) 5TM-5TMR_LYT PF07694.7 gi|549456151|ref|YP_008604910.1| - 0.0033 16.7 15.8 0.0059 15.9 11.0 1.4 1 1 0 1 1 1 1 5TMR of 5TMR-LYT YbhQ PF11076.3 gi|549456151|ref|YP_008604910.1| - 1.4 8.5 5.3 12 5.4 0.5 2.4 2 0 0 2 2 2 0 Putative inner membrane protein YbhQ DUF3093 PF11292.3 gi|549456151|ref|YP_008604910.1| - 6 6.6 7.8 0.53 10.0 0.2 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3093) SprB PF13573.1 gi|549456152|ref|YP_008604911.1| - 0.26 10.9 2.7 0.27 10.8 0.1 2.4 3 0 0 3 3 3 0 SprB repeat Peptidase_S24 PF00717.18 gi|549456155|ref|YP_008604914.1| - 1.4e-07 31.0 0.7 2.6e-07 30.2 0.5 1.4 1 0 0 1 1 1 1 Peptidase S24-like Flg_new PF09479.5 gi|549456156|ref|YP_008604915.1| - 0.0008 19.3 7.9 3.7 7.6 0.0 5.4 4 1 1 5 5 5 3 Listeria-Bacteroides repeat domain (List_Bact_rpt) Prok_Ub PF14454.1 gi|549456156|ref|YP_008604915.1| - 0.05 13.2 0.0 8.7 6.0 0.0 2.8 2 0 0 2 2 2 0 Prokaryotic Ubiquitin HTH_5 PF01022.15 gi|549456157|ref|YP_008604916.1| - 1.1e-06 28.1 0.0 1.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|549456157|ref|YP_008604916.1| - 2.3e-06 26.9 0.1 6.7e-06 25.3 0.0 1.8 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|549456157|ref|YP_008604916.1| - 7.7e-05 22.4 0.1 0.00015 21.4 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|549456157|ref|YP_008604916.1| - 0.00043 19.8 0.0 0.00067 19.2 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|549456157|ref|YP_008604916.1| - 0.00053 20.0 0.1 0.00053 20.0 0.1 1.6 2 0 0 2 2 1 1 Transcriptional regulator TrmB PF01978.14 gi|549456157|ref|YP_008604916.1| - 0.0012 18.5 0.1 0.0017 18.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.6 gi|549456157|ref|YP_008604916.1| - 0.0013 18.3 0.1 0.0051 16.4 0.0 1.8 1 1 1 2 2 2 1 Winged helix DNA-binding domain (DUF1495) MarR PF01047.17 gi|549456157|ref|YP_008604916.1| - 0.003 17.2 0.0 0.0051 16.4 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|549456157|ref|YP_008604916.1| - 0.012 15.1 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain T2SJ PF11612.3 gi|549456157|ref|YP_008604916.1| - 0.038 13.7 0.0 0.041 13.6 0.0 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein J HTH_34 PF13601.1 gi|549456157|ref|YP_008604916.1| - 0.08 12.9 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_pRha PF09669.5 gi|549456157|ref|YP_008604916.1| - 0.082 13.2 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) FaeA PF04703.7 gi|549456157|ref|YP_008604916.1| - 0.094 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_27 PF13463.1 gi|549456157|ref|YP_008604916.1| - 0.12 12.7 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MatE PF01554.13 gi|549456158|ref|YP_008604917.1| - 2.9e-49 166.8 36.6 8.8e-29 100.2 12.1 3.0 4 0 0 4 4 4 2 MatE MVIN PF03023.9 gi|549456158|ref|YP_008604917.1| - 6.5e-07 28.1 15.5 6.5e-07 28.1 10.7 1.9 1 1 1 2 2 2 1 MviN-like protein Polysacc_synt_C PF14667.1 gi|549456158|ref|YP_008604917.1| - 0.00089 19.0 23.2 0.00089 19.0 16.1 4.4 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain GlgS PF08971.6 gi|549456159|ref|YP_008604918.1| - 0.036 13.9 0.2 0.28 11.1 0.0 2.3 3 0 0 3 3 3 0 Glycogen synthesis protein DUF4406 PF14359.1 gi|549456159|ref|YP_008604918.1| - 0.062 13.3 0.0 0.15 12.1 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4406) ETF PF01012.16 gi|549456160|ref|YP_008604919.1| - 1.5e-34 119.0 0.0 2e-34 118.6 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|549456161|ref|YP_008604920.1| - 1.2e-37 129.1 0.0 2.4e-37 128.1 0.0 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|549456161|ref|YP_008604920.1| - 1.8e-35 120.4 0.6 3.5e-35 119.4 0.4 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain DAO PF01266.19 gi|549456162|ref|YP_008604921.1| - 1.7e-19 69.9 8.0 1.1e-10 41.0 1.4 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|549456162|ref|YP_008604921.1| - 2.2e-09 36.7 3.8 3.8e-08 32.7 0.5 2.3 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|549456162|ref|YP_008604921.1| - 2.8e-09 36.5 1.2 5.7e-09 35.5 0.8 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|549456162|ref|YP_008604921.1| - 5.1e-09 35.4 7.6 1.5e-06 27.3 2.1 2.5 1 1 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|549456162|ref|YP_008604921.1| - 2.3e-08 32.9 1.8 1.6e-07 30.1 0.7 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|549456162|ref|YP_008604921.1| - 6.2e-08 32.5 1.4 1.5e-07 31.2 1.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|549456162|ref|YP_008604921.1| - 1.6e-07 30.6 1.0 7.2e-07 28.5 0.3 2.0 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.9 gi|549456162|ref|YP_008604921.1| - 2.7e-07 29.5 2.2 0.00093 17.9 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|549456162|ref|YP_008604921.1| - 5.9e-07 29.5 0.0 1.2e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|549456162|ref|YP_008604921.1| - 2.2e-05 24.6 0.7 5.5e-05 23.3 0.5 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|549456162|ref|YP_008604921.1| - 5e-05 22.4 1.9 0.00019 20.5 1.3 1.8 1 1 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.17 gi|549456162|ref|YP_008604921.1| - 0.00026 19.9 3.3 0.00058 18.8 1.0 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|549456162|ref|YP_008604921.1| - 0.00073 18.7 0.2 0.0022 17.1 0.1 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.22 gi|549456162|ref|YP_008604921.1| - 0.0013 19.1 3.5 0.0033 17.7 0.8 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|549456162|ref|YP_008604921.1| - 0.0048 15.2 0.0 1.7 6.9 0.0 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor 3HCDH_N PF02737.13 gi|549456162|ref|YP_008604921.1| - 0.05 13.2 0.5 0.17 11.4 0.2 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|549456162|ref|YP_008604921.1| - 0.094 12.4 1.2 0.3 10.8 0.8 1.9 1 1 0 1 1 1 0 FAD-NAD(P)-binding Aminotran_5 PF00266.14 gi|549456163|ref|YP_008604922.1| - 4e-31 108.1 0.0 5e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Hexokinase_2 PF03727.11 gi|549456163|ref|YP_008604922.1| - 0.0061 15.7 0.1 0.014 14.5 0.1 1.5 1 1 0 1 1 1 1 Hexokinase Aminotran_1_2 PF00155.16 gi|549456163|ref|YP_008604922.1| - 0.024 13.6 0.0 0.061 12.2 0.0 1.6 1 1 0 1 1 1 0 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|549456163|ref|YP_008604922.1| - 0.024 13.7 0.0 0.079 12.0 0.0 1.7 1 1 0 1 1 1 0 Beta-eliminating lyase SPK PF04435.13 gi|549456163|ref|YP_008604922.1| - 0.038 13.9 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF545) Metal_resist PF13801.1 gi|549456163|ref|YP_008604922.1| - 0.057 13.4 2.7 0.061 13.3 0.1 2.3 3 0 0 3 3 3 0 Heavy-metal resistance Translin PF01997.11 gi|549456164|ref|YP_008604923.1| - 1.1e-34 119.7 0.0 1.3e-34 119.5 0.0 1.1 1 0 0 1 1 1 1 Translin family PPR_3 PF13812.1 gi|549456164|ref|YP_008604923.1| - 0.0022 18.1 0.5 0.052 13.8 0.0 3.1 2 0 0 2 2 2 1 Pentatricopeptide repeat domain FUSC PF04632.7 gi|549456164|ref|YP_008604923.1| - 0.18 10.2 3.2 0.22 9.8 2.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family TPR_16 PF13432.1 gi|549456164|ref|YP_008604923.1| - 1.7 9.4 7.6 19 6.0 1.3 3.6 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|549456164|ref|YP_008604923.1| - 2.5 8.9 10.6 9.8 7.1 0.3 3.8 3 1 1 4 4 4 0 Tetratricopeptide repeat GHMP_kinases_N PF00288.21 gi|549456165|ref|YP_008604924.1| - 1.6e-05 24.8 0.3 3.4e-05 23.8 0.2 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|549456165|ref|YP_008604924.1| - 3.3e-05 23.9 0.1 9.1e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal Na_H_Exchanger PF00999.16 gi|549456166|ref|YP_008604925.1| - 7.8e-51 172.7 57.4 7.8e-51 172.7 39.8 1.5 2 0 0 2 2 2 1 Sodium/hydrogen exchanger family UPF0546 PF10639.4 gi|549456166|ref|YP_008604925.1| - 5.8 6.7 11.0 0.29 10.9 2.5 2.8 2 1 1 3 3 3 0 Uncharacterised protein family UPF0546 Thioredoxin PF00085.15 gi|549456167|ref|YP_008604926.1| - 2.3e-18 65.7 0.0 3.1e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|549456167|ref|YP_008604926.1| - 1.9e-07 31.2 0.0 3.4e-06 27.2 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain DIM1 PF02966.11 gi|549456167|ref|YP_008604926.1| - 0.00089 18.7 0.0 0.0021 17.5 0.0 1.5 1 1 1 2 2 2 1 Mitosis protein DIM1 Thioredoxin_7 PF13899.1 gi|549456167|ref|YP_008604926.1| - 0.00096 19.1 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|549456167|ref|YP_008604926.1| - 0.0019 17.9 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.6 gi|549456167|ref|YP_008604926.1| - 0.0021 17.9 0.1 0.0073 16.1 0.1 1.8 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_8 PF13905.1 gi|549456167|ref|YP_008604926.1| - 0.0073 16.3 0.0 2.1 8.5 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|549456167|ref|YP_008604926.1| - 0.015 14.8 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_6 PF13848.1 gi|549456167|ref|YP_008604926.1| - 0.069 12.9 0.0 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain DFF-C PF09033.5 gi|549456167|ref|YP_008604926.1| - 0.14 12.0 0.1 0.22 11.3 0.1 1.3 1 0 0 1 1 1 0 DNA Fragmentation factor 45kDa, C terminal domain CBS PF00571.23 gi|549456167|ref|YP_008604926.1| - 0.16 11.7 1.8 3.1 7.6 0.5 3.1 2 2 0 2 2 2 0 CBS domain THUMP PF02926.12 gi|549456168|ref|YP_008604927.1| - 4.1e-16 59.1 1.5 5.4e-16 58.7 1.1 1.1 1 0 0 1 1 1 1 THUMP domain PGM_PMM_I PF02878.11 gi|549456169|ref|YP_008604928.1| - 2.8e-36 124.0 0.1 5.9e-36 122.9 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|549456169|ref|YP_008604928.1| - 5.7e-20 71.5 0.0 1.2e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|549456169|ref|YP_008604928.1| - 2.1e-12 46.8 0.1 6.1e-12 45.3 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|549456169|ref|YP_008604928.1| - 8.4e-06 25.8 0.0 2.8e-05 24.1 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DUF2208 PF09973.4 gi|549456170|ref|YP_008604929.1| - 1.8e-72 243.3 3.9 2.1e-72 243.1 2.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Tiny_TM_bacill PF09680.5 gi|549456170|ref|YP_008604929.1| - 0.006 15.9 0.8 0.006 15.9 0.6 2.2 2 0 0 2 2 2 1 Protein of unknown function (Tiny_TM_bacill) DUF1673 PF07895.6 gi|549456170|ref|YP_008604929.1| - 0.042 13.3 6.4 0.095 12.2 4.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1673) Wzz PF02706.10 gi|549456170|ref|YP_008604929.1| - 0.27 11.0 1.0 0.71 9.6 0.7 1.7 1 0 0 1 1 1 0 Chain length determinant protein Amidohydro_1 PF01979.15 gi|549456171|ref|YP_008604930.1| - 1.1e-06 28.6 0.0 6.6e-06 26.0 0.0 1.9 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|549456171|ref|YP_008604930.1| - 4.5e-06 26.8 0.0 2e-05 24.8 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase SCP2 PF02036.12 gi|549456172|ref|YP_008604931.1| - 7.9e-19 67.8 0.1 9.4e-19 67.6 0.0 1.0 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.1 gi|549456172|ref|YP_008604931.1| - 2.4e-05 24.3 0.0 3.3e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal Pox_VERT_large PF04441.8 gi|549456172|ref|YP_008604931.1| - 0.009 14.2 0.0 0.0092 14.1 0.0 1.0 1 0 0 1 1 1 1 Poxvirus early transcription factor (VETF), large subunit DeoC PF01791.4 gi|549456173|ref|YP_008604932.1| - 6.9e-32 110.6 0.1 7.9e-32 110.4 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase IF2_N PF04760.10 gi|549456173|ref|YP_008604932.1| - 0.049 13.3 0.0 0.94 9.1 0.0 3.0 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region IMPDH PF00478.20 gi|549456173|ref|YP_008604932.1| - 0.13 11.1 0.8 0.19 10.5 0.6 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Lipase_GDSL_3 PF14606.1 gi|549456173|ref|YP_008604932.1| - 0.13 11.9 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family FMN_dh PF01070.13 gi|549456173|ref|YP_008604932.1| - 0.47 9.2 5.6 2.4 6.9 0.9 2.7 3 0 0 3 3 3 0 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|549456173|ref|YP_008604932.1| - 1.1 8.1 3.3 1.3 7.9 1.6 1.4 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase DUF4346 PF14251.1 gi|549456174|ref|YP_008604933.1| - 3.4e-08 33.2 0.0 4.3e-05 23.2 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4346) GHMP_kinases_N PF00288.21 gi|549456175|ref|YP_008604934.1| - 4.8e-18 64.9 0.2 1.2e-17 63.7 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|549456175|ref|YP_008604934.1| - 3.1e-16 59.3 1.6 6.7e-16 58.2 1.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Peptidase_S9 PF00326.16 gi|549456176|ref|YP_008604935.1| - 3.4e-47 160.4 0.0 4.5e-47 160.0 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|549456176|ref|YP_008604935.1| - 1.3e-15 57.3 0.1 2.1e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|549456176|ref|YP_008604935.1| - 9.6e-11 41.9 2.0 1.8e-09 37.8 1.4 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|549456176|ref|YP_008604935.1| - 5.6e-08 32.6 0.1 0.001 18.6 0.1 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold PD40 PF07676.7 gi|549456176|ref|YP_008604935.1| - 6.5e-07 28.8 4.2 0.00054 19.5 0.1 3.5 3 0 0 3 3 3 2 WD40-like Beta Propeller Repeat AXE1 PF05448.7 gi|549456176|ref|YP_008604935.1| - 4.8e-06 25.2 0.0 0.00035 19.1 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DLH PF01738.13 gi|549456176|ref|YP_008604935.1| - 2.8e-05 23.4 0.0 0.00033 20.0 0.0 2.0 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|549456176|ref|YP_008604935.1| - 0.0001 21.9 1.1 0.0041 16.7 0.7 2.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|549456176|ref|YP_008604935.1| - 0.00018 21.0 0.0 0.02 14.3 0.0 2.3 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Esterase_phd PF10503.4 gi|549456176|ref|YP_008604935.1| - 0.00063 19.0 0.3 0.0058 15.9 0.2 2.1 1 1 0 1 1 1 1 Esterase PHB depolymerase LIP PF03583.9 gi|549456176|ref|YP_008604935.1| - 0.0028 16.8 0.1 0.05 12.8 0.0 2.1 2 0 0 2 2 2 1 Secretory lipase DUF2920 PF11144.3 gi|549456176|ref|YP_008604935.1| - 0.003 16.6 0.0 0.57 9.1 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2920) Hydrolase_4 PF12146.3 gi|549456176|ref|YP_008604935.1| - 0.011 15.5 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 Putative lysophospholipase Peptidase_S15 PF02129.13 gi|549456176|ref|YP_008604935.1| - 0.012 15.0 0.0 3.2 7.1 0.0 2.2 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_4 PF08386.5 gi|549456176|ref|YP_008604935.1| - 0.026 14.4 0.0 0.05 13.4 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein DPPIV_N PF00930.16 gi|549456176|ref|YP_008604935.1| - 0.1 11.1 0.0 2.4 6.6 0.0 2.3 1 1 1 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region TFIIB PF00382.14 gi|549456177|ref|YP_008604936.1| - 1.1e-35 121.2 1.9 1.1e-16 60.3 0.1 2.5 3 0 0 3 3 3 2 Transcription factor TFIIB repeat Sigma70_r4 PF04545.11 gi|549456177|ref|YP_008604936.1| - 0.00092 18.4 2.6 0.0072 15.6 0.2 3.0 2 1 1 3 3 3 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|549456177|ref|YP_008604936.1| - 0.0017 17.8 0.0 0.0097 15.4 0.0 2.2 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|549456177|ref|YP_008604936.1| - 0.0047 16.3 2.6 0.11 11.9 0.3 3.3 2 1 1 3 3 3 2 Sigma-70, region 4 DUF2089 PF09862.4 gi|549456177|ref|YP_008604936.1| - 0.0058 16.4 0.5 0.014 15.1 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2089) HTH_23 PF13384.1 gi|549456177|ref|YP_008604936.1| - 0.006 16.2 0.5 0.095 12.3 0.4 2.7 1 1 0 1 1 1 1 Homeodomain-like domain Cyclin_N PF00134.18 gi|549456177|ref|YP_008604936.1| - 0.043 13.3 0.0 0.37 10.3 0.0 2.0 2 0 0 2 2 2 0 Cyclin, N-terminal domain TF_Zn_Ribbon PF08271.7 gi|549456177|ref|YP_008604936.1| - 0.048 12.9 0.2 0.096 12.0 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding LexA_DNA_bind PF01726.11 gi|549456178|ref|YP_008604937.1| - 0.016 14.7 0.0 0.049 13.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain HTH_28 PF13518.1 gi|549456178|ref|YP_008604937.1| - 0.042 13.8 1.3 0.13 12.2 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain DUF711 PF05167.7 gi|549456179|ref|YP_008604938.1| - 4.1e-66 223.3 0.0 4.9e-66 223.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) CopD PF05425.8 gi|549456180|ref|YP_008604939.1| - 2.4e-08 34.1 7.9 2.4e-08 34.1 5.4 1.8 1 1 1 2 2 2 1 Copper resistance protein D DUF2269 PF10027.4 gi|549456180|ref|YP_008604939.1| - 0.0075 16.0 8.6 0.016 14.9 6.0 1.6 1 1 0 1 1 1 1 Predicted integral membrane protein (DUF2269) DUF2306 PF10067.4 gi|549456180|ref|YP_008604939.1| - 0.13 12.3 8.8 0.023 14.7 3.2 1.9 2 1 0 2 2 2 0 Predicted membrane protein (DUF2306) UPF0093 PF03653.8 gi|549456180|ref|YP_008604939.1| - 0.18 11.7 7.9 1.5 8.7 5.5 1.9 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0093) DUF161 PF02588.10 gi|549456180|ref|YP_008604939.1| - 0.69 10.2 3.5 0.25 11.6 0.4 1.8 2 0 0 2 2 2 0 Uncharacterized BCR, YitT family COG1284 BtpA PF03437.10 gi|549456181|ref|YP_008604940.1| - 8.8e-105 349.5 0.0 1e-104 349.3 0.0 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|549456181|ref|YP_008604940.1| - 0.014 13.9 0.0 0.028 12.9 0.0 1.5 1 0 0 1 1 1 0 Tryptophan synthase alpha chain AIRS PF00586.19 gi|549456181|ref|YP_008604940.1| - 0.062 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 AIR synthase related protein, N-terminal domain Peptidase_M17 PF00883.16 gi|549456182|ref|YP_008604941.1| - 3e-95 318.6 0.0 3.7e-95 318.3 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.12 gi|549456182|ref|YP_008604941.1| - 7.2e-11 41.9 1.6 1e-09 38.2 0.0 3.3 4 0 0 4 4 4 1 Cytosol aminopeptidase family, N-terminal domain GMP_synt_C PF00958.17 gi|549456183|ref|YP_008604942.1| - 2.1e-35 120.2 0.0 3.7e-35 119.5 0.0 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain GATase PF00117.23 gi|549456183|ref|YP_008604942.1| - 3.8e-34 117.8 0.0 5.6e-34 117.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|549456183|ref|YP_008604942.1| - 8.5e-12 44.9 0.0 1.2e-10 41.2 0.0 2.5 1 1 0 1 1 1 1 Peptidase C26 NAD_synthase PF02540.12 gi|549456183|ref|YP_008604942.1| - 1.8e-10 40.1 0.1 1.7e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 NAD synthase QueC PF06508.8 gi|549456183|ref|YP_008604942.1| - 0.00013 21.2 0.0 0.0011 18.3 0.0 2.0 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|549456183|ref|YP_008604942.1| - 0.0014 18.1 0.0 0.0027 17.2 0.0 1.5 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|549456183|ref|YP_008604942.1| - 0.0014 18.1 0.0 0.0023 17.3 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|549456183|ref|YP_008604942.1| - 0.022 13.3 0.0 0.096 11.2 0.0 1.8 2 0 0 2 2 2 0 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|549456183|ref|YP_008604942.1| - 0.025 14.0 0.0 0.037 13.5 0.0 1.4 1 1 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.14 gi|549456183|ref|YP_008604942.1| - 0.057 13.2 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family GATase_3 PF07685.9 gi|549456183|ref|YP_008604942.1| - 0.065 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Imm38 PF15599.1 gi|549456183|ref|YP_008604942.1| - 0.079 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Immunity protein 38 DNA_RNApol_7kD PF03604.8 gi|549456184|ref|YP_008604943.1| - 0.00034 19.9 2.2 0.42 10.1 0.0 2.2 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|549456184|ref|YP_008604943.1| - 0.0025 17.4 2.0 0.095 12.4 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-IS66 PF13005.2 gi|549456184|ref|YP_008604943.1| - 0.0074 16.2 0.5 0.014 15.3 0.3 1.5 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DUF4379 PF14311.1 gi|549456184|ref|YP_008604943.1| - 0.0082 15.9 2.5 0.029 14.1 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4379) zf-ribbon_3 PF13248.1 gi|549456184|ref|YP_008604943.1| - 0.012 14.8 1.5 0.36 10.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|549456184|ref|YP_008604943.1| - 0.017 15.4 0.3 0.029 14.6 0.2 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.5 gi|549456184|ref|YP_008604943.1| - 0.02 14.3 0.3 5.5 6.5 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Elf1 PF05129.8 gi|549456184|ref|YP_008604943.1| - 0.023 14.3 0.1 0.049 13.3 0.1 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DZR PF12773.2 gi|549456184|ref|YP_008604943.1| - 0.031 14.0 1.3 0.36 10.6 0.9 2.0 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|549456184|ref|YP_008604943.1| - 0.043 13.7 0.4 1.3 9.0 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|549456184|ref|YP_008604943.1| - 0.059 13.1 0.6 11 5.9 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.14 gi|549456184|ref|YP_008604943.1| - 0.078 12.6 0.2 7 6.3 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|549456184|ref|YP_008604943.1| - 0.083 12.5 1.9 1.8 8.2 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-H2C2_2 PF13465.1 gi|549456184|ref|YP_008604943.1| - 0.085 13.1 0.3 3.5 8.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_2 PF13240.1 gi|549456184|ref|YP_008604943.1| - 0.097 12.1 1.2 3.7 7.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|549456184|ref|YP_008604943.1| - 0.12 12.4 0.3 2.9 7.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|549456184|ref|YP_008604943.1| - 0.14 11.8 0.2 17 5.1 0.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain FYDLN_acid PF09538.5 gi|549456184|ref|YP_008604943.1| - 0.14 12.7 0.2 4.9 7.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_5 PF13719.1 gi|549456184|ref|YP_008604943.1| - 0.14 11.7 1.0 10 5.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|549456184|ref|YP_008604943.1| - 0.16 11.8 1.4 2.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin Ribosomal_L44 PF00935.14 gi|549456184|ref|YP_008604943.1| - 0.2 11.6 0.7 1.3 9.0 0.0 2.0 1 1 1 2 2 2 0 Ribosomal protein L44 zinc_ribbon_4 PF13717.1 gi|549456184|ref|YP_008604943.1| - 0.24 11.1 1.2 15 5.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|549456184|ref|YP_008604943.1| - 0.33 11.1 0.3 0.33 11.1 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.2 gi|549456184|ref|YP_008604943.1| - 2.9 7.7 6.2 1 9.1 1.6 2.1 2 1 0 2 2 1 0 Transposase zinc-ribbon domain MS_channel PF00924.13 gi|549456185|ref|YP_008604944.1| - 8e-08 31.8 1.0 1.2e-07 31.2 0.7 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF1118 PF06549.7 gi|549456185|ref|YP_008604944.1| - 2 8.5 5.8 1.8 8.7 1.8 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1118) TrkA_N PF02254.13 gi|549456186|ref|YP_008604945.1| - 5.8e-24 84.3 0.9 8.1e-24 83.8 0.3 1.5 2 0 0 2 2 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|549456186|ref|YP_008604945.1| - 3.6e-09 36.7 0.1 1.2e-08 35.1 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_C PF02080.16 gi|549456186|ref|YP_008604945.1| - 1.8e-08 33.8 0.3 1.9e-07 30.5 0.1 2.3 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|549456186|ref|YP_008604945.1| - 2.3e-06 27.7 0.1 3.7e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding XdhC_C PF13478.1 gi|549456186|ref|YP_008604945.1| - 4.8e-06 26.9 0.0 8.1e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 XdhC Rossmann domain ThiF PF00899.16 gi|549456186|ref|YP_008604945.1| - 1.2e-05 25.1 0.8 0.0019 18.0 0.1 2.4 1 1 1 2 2 2 1 ThiF family 3HCDH_N PF02737.13 gi|549456186|ref|YP_008604945.1| - 1.4e-05 24.8 0.0 2.3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|549456186|ref|YP_008604945.1| - 5.9e-05 23.4 0.1 0.00014 22.2 0.1 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|549456186|ref|YP_008604945.1| - 6.1e-05 22.1 0.1 8.1e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase FAD_binding_3 PF01494.14 gi|549456186|ref|YP_008604945.1| - 6.8e-05 22.0 0.2 0.00018 20.6 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain ApbA PF02558.11 gi|549456186|ref|YP_008604945.1| - 6.9e-05 22.3 0.0 0.00011 21.6 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|549456186|ref|YP_008604945.1| - 8.6e-05 21.7 0.1 0.00019 20.6 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|549456186|ref|YP_008604945.1| - 0.00011 22.4 0.8 0.00027 21.2 0.1 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|549456186|ref|YP_008604945.1| - 0.00014 21.3 0.0 0.00024 20.5 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.15 gi|549456186|ref|YP_008604945.1| - 0.00019 21.5 0.1 0.00053 20.0 0.0 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|549456186|ref|YP_008604945.1| - 0.0012 18.6 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.9 gi|549456186|ref|YP_008604945.1| - 0.0018 18.1 0.0 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DapB_N PF01113.15 gi|549456186|ref|YP_008604945.1| - 0.0036 17.2 0.1 0.01 15.7 0.0 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus DAO PF01266.19 gi|549456186|ref|YP_008604945.1| - 0.0037 16.2 0.1 0.006 15.5 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|549456186|ref|YP_008604945.1| - 0.0083 15.2 0.7 0.82 8.7 0.1 2.1 2 0 0 2 2 2 1 Thi4 family adh_short PF00106.20 gi|549456186|ref|YP_008604945.1| - 0.013 15.4 0.1 0.036 13.9 0.0 1.7 2 0 0 2 2 1 0 short chain dehydrogenase GFO_IDH_MocA PF01408.17 gi|549456186|ref|YP_008604945.1| - 0.016 15.7 0.0 0.029 14.8 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold OKR_DC_1_N PF03709.10 gi|549456186|ref|YP_008604945.1| - 0.018 15.1 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Methyltransf_25 PF13649.1 gi|549456186|ref|YP_008604945.1| - 0.024 14.9 0.0 0.036 14.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RmlD_sub_bind PF04321.12 gi|549456186|ref|YP_008604945.1| - 0.027 13.3 0.0 0.04 12.8 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain NAD_binding_8 PF13450.1 gi|549456186|ref|YP_008604945.1| - 0.029 14.3 0.1 0.063 13.3 0.1 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ADH_zinc_N PF00107.21 gi|549456186|ref|YP_008604945.1| - 0.033 13.7 0.4 1.6 8.2 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding dehydrogenase 3Beta_HSD PF01073.14 gi|549456186|ref|YP_008604945.1| - 0.036 12.7 0.1 0.061 12.0 0.1 1.4 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Rossmann-like PF10727.4 gi|549456186|ref|YP_008604945.1| - 0.04 13.6 0.4 0.11 12.2 0.3 2.0 1 1 0 1 1 1 0 Rossmann-like domain Epimerase PF01370.16 gi|549456186|ref|YP_008604945.1| - 0.044 13.2 0.0 0.074 12.4 0.0 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family TehB PF03848.9 gi|549456186|ref|YP_008604945.1| - 0.072 12.2 0.0 0.15 11.2 0.0 1.4 1 1 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_18 PF12847.2 gi|549456186|ref|YP_008604945.1| - 0.079 13.5 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain NAD_Gly3P_dh_N PF01210.18 gi|549456186|ref|YP_008604945.1| - 0.091 12.4 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding_2 PF13380.1 gi|549456186|ref|YP_008604945.1| - 0.13 12.3 0.1 0.32 11.1 0.1 1.5 1 1 0 1 1 1 0 CoA binding domain Enolase_C PF00113.17 gi|549456187|ref|YP_008604946.1| - 7e-105 350.2 0.0 9.2e-105 349.8 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|549456187|ref|YP_008604946.1| - 3.6e-47 159.6 0.0 6e-47 158.8 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|549456187|ref|YP_008604946.1| - 0.0003 20.7 0.0 0.00074 19.4 0.0 1.7 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|549456187|ref|YP_008604946.1| - 0.011 14.7 0.0 0.019 13.9 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|549456187|ref|YP_008604946.1| - 0.012 16.1 0.3 0.06 13.8 0.0 2.3 2 0 0 2 2 2 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DUF3639 PF12341.3 gi|549456188|ref|YP_008604947.1| - 0.068 13.1 0.0 0.068 13.1 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3639) DUF3197 PF11432.3 gi|549456188|ref|YP_008604947.1| - 0.089 12.8 0.1 0.19 11.7 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3197) tRNA-synt_1b PF00579.20 gi|549456190|ref|YP_008604949.1| - 2.5e-40 138.4 0.0 5.1e-40 137.4 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) VKOR PF07884.9 gi|549456191|ref|YP_008604950.1| - 8.8e-19 67.7 21.2 1.1e-18 67.4 14.7 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family PhoH PF02562.11 gi|549456193|ref|YP_008604952.1| - 2e-45 154.5 0.0 2.8e-45 154.0 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.12 gi|549456193|ref|YP_008604952.1| - 1.7e-09 37.1 4.9 6.4e-07 28.8 0.9 2.6 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|549456193|ref|YP_008604952.1| - 1.3e-08 34.4 0.4 1.1e-07 31.4 0.1 2.3 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|549456193|ref|YP_008604952.1| - 2e-06 27.3 4.5 7.5e-06 25.5 0.8 2.6 2 0 0 2 2 2 1 KH domain AAA_30 PF13604.1 gi|549456193|ref|YP_008604952.1| - 1.3e-05 24.8 0.0 4.4e-05 23.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain KH_3 PF13014.1 gi|549456193|ref|YP_008604952.1| - 5.3e-05 22.7 0.6 0.00024 20.6 0.3 2.2 2 0 0 2 2 2 1 KH domain DEAD PF00270.24 gi|549456193|ref|YP_008604952.1| - 0.0091 15.5 0.0 0.012 15.0 0.0 1.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|549456193|ref|YP_008604952.1| - 0.017 15.2 0.2 0.1 12.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|549456193|ref|YP_008604952.1| - 0.12 12.6 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Nol1_Nop2_Fmu PF01189.12 gi|549456194|ref|YP_008604953.1| - 1.6e-47 162.2 0.0 2e-47 161.9 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_26 PF13659.1 gi|549456194|ref|YP_008604953.1| - 1.2e-08 34.9 0.2 3.3e-08 33.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|549456194|ref|YP_008604953.1| - 9.4e-07 28.5 0.0 1.7e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|549456194|ref|YP_008604953.1| - 3.5e-06 27.5 0.0 7.4e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|549456194|ref|YP_008604953.1| - 4.8e-05 23.4 0.0 8.6e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_15 PF09445.5 gi|549456194|ref|YP_008604953.1| - 0.00043 19.8 0.0 0.00065 19.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|549456194|ref|YP_008604953.1| - 0.0019 17.7 0.0 0.0038 16.8 0.0 1.6 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 DUF2630 PF10944.3 gi|549456194|ref|YP_008604953.1| - 0.015 15.3 0.0 0.06 13.4 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2630) Cons_hypoth95 PF03602.10 gi|549456194|ref|YP_008604953.1| - 0.071 12.5 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|549456194|ref|YP_008604953.1| - 0.12 11.4 0.0 0.61 9.1 0.0 1.9 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|549456194|ref|YP_008604953.1| - 0.15 12.5 0.0 3.7 8.1 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain MFS_1 PF07690.11 gi|549456195|ref|YP_008604954.1| - 4.8e-24 84.7 47.8 5.6e-12 45.0 21.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|549456195|ref|YP_008604954.1| - 9.4e-06 25.3 2.2 0.081 12.7 0.2 3.4 3 0 0 3 3 3 2 MFS_1 like family DUF1213 PF06740.7 gi|549456195|ref|YP_008604954.1| - 0.18 11.9 0.4 0.3 11.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1213) CoA_trans PF01144.18 gi|549456197|ref|YP_008604956.1| - 5.1e-52 176.1 0.2 3.3e-49 166.9 0.0 2.7 3 0 0 3 3 3 2 Coenzyme A transferase Ribosomal_S25 PF03297.10 gi|549456198|ref|YP_008604957.1| - 5.2e-06 26.4 0.6 7e-06 26.0 0.4 1.3 1 1 0 1 1 1 1 S25 ribosomal protein HTH_42 PF06224.7 gi|549456198|ref|YP_008604957.1| - 0.00024 20.5 0.6 0.00026 20.4 0.4 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|549456198|ref|YP_008604957.1| - 0.0014 18.0 2.5 0.0027 17.0 0.2 2.0 1 1 1 2 2 2 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|549456198|ref|YP_008604957.1| - 0.004 16.8 0.0 0.0053 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family EAP30 PF04157.11 gi|549456198|ref|YP_008604957.1| - 0.0046 16.1 0.1 0.005 16.0 0.1 1.2 1 0 0 1 1 1 1 EAP30/Vps36 family Atg8 PF02991.11 gi|549456198|ref|YP_008604957.1| - 0.017 15.0 0.2 0.019 14.9 0.1 1.1 1 0 0 1 1 1 0 Autophagy protein Atg8 ubiquitin like HTH_11 PF08279.7 gi|549456198|ref|YP_008604957.1| - 0.02 14.5 0.1 0.03 13.9 0.1 1.2 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.1 gi|549456198|ref|YP_008604957.1| - 0.021 14.8 0.1 0.033 14.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain F420_ligase PF01996.11 gi|549456198|ref|YP_008604957.1| - 0.028 13.4 0.0 0.03 13.3 0.0 1.0 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase Rrf2 PF02082.15 gi|549456198|ref|YP_008604957.1| - 0.056 13.5 0.0 0.079 13.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_29 PF13551.1 gi|549456198|ref|YP_008604957.1| - 0.061 13.4 0.3 0.24 11.5 0.1 1.6 1 1 1 2 2 2 0 Winged helix-turn helix HTH_24 PF13412.1 gi|549456198|ref|YP_008604957.1| - 0.077 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|549456198|ref|YP_008604957.1| - 0.1 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|549456198|ref|YP_008604957.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|549456198|ref|YP_008604957.1| - 0.11 11.9 0.1 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HxlR PF01638.12 gi|549456198|ref|YP_008604957.1| - 0.13 11.9 0.4 0.47 10.1 0.1 1.8 1 1 1 2 2 2 0 HxlR-like helix-turn-helix AAA_26 PF13500.1 gi|549456199|ref|YP_008604958.1| - 0.0085 15.7 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|549456199|ref|YP_008604958.1| - 0.058 12.7 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Metallophos PF00149.23 gi|549456200|ref|YP_008604959.1| - 1.2e-05 24.8 0.0 0.008 15.5 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|549456200|ref|YP_008604959.1| - 4.3e-05 23.3 0.0 6.1e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PGA_cap PF09587.5 gi|549456200|ref|YP_008604959.1| - 0.098 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap DUF3116 PF11313.3 gi|549456201|ref|YP_008604960.1| - 0.0077 15.8 0.3 0.01 15.4 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) Cdc6_C PF09079.6 gi|549456201|ref|YP_008604960.1| - 0.028 14.1 0.3 0.064 12.9 0.1 1.6 1 1 1 2 2 2 0 CDC6, C terminal TrmB PF01978.14 gi|549456201|ref|YP_008604960.1| - 0.029 14.0 0.2 2.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AAA PF00004.24 gi|549456202|ref|YP_008604961.1| - 7.5e-100 330.3 0.0 5.8e-51 172.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|549456202|ref|YP_008604961.1| - 6.8e-32 109.2 1.9 4.5e-31 106.6 1.5 2.3 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|549456202|ref|YP_008604961.1| - 3.1e-16 59.1 0.1 2.2e-07 30.1 0.0 3.5 3 1 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|549456202|ref|YP_008604961.1| - 3.3e-14 53.1 0.0 3.2e-07 30.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|549456202|ref|YP_008604961.1| - 6.6e-14 52.3 0.0 9.2e-07 29.0 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|549456202|ref|YP_008604961.1| - 2.7e-13 50.2 0.3 2.4e-05 24.4 0.0 4.3 2 2 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|549456202|ref|YP_008604961.1| - 3.3e-13 49.0 2.7 3.3e-13 49.0 1.9 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_17 PF13207.1 gi|549456202|ref|YP_008604961.1| - 4e-13 50.2 0.0 7.7e-07 29.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|549456202|ref|YP_008604961.1| - 7.1e-12 45.4 0.0 4.7e-05 23.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|549456202|ref|YP_008604961.1| - 3.2e-10 39.8 3.7 0.0011 18.6 0.0 4.3 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|549456202|ref|YP_008604961.1| - 3.3e-10 39.2 0.2 0.00078 18.2 0.0 2.9 3 0 0 3 3 3 2 TIP49 C-terminus AAA_14 PF13173.1 gi|549456202|ref|YP_008604961.1| - 3.5e-10 39.8 0.0 4.4e-05 23.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|549456202|ref|YP_008604961.1| - 1.1e-09 37.7 0.0 0.0001 21.4 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|549456202|ref|YP_008604961.1| - 4.5e-09 35.9 0.4 0.0028 17.1 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|549456202|ref|YP_008604961.1| - 5.8e-09 35.9 0.0 0.0036 17.0 0.0 4.0 2 2 2 4 4 4 2 Archaeal ATPase AAA_19 PF13245.1 gi|549456202|ref|YP_008604961.1| - 4.3e-08 32.8 3.6 0.0055 16.4 0.0 3.2 3 0 0 3 3 2 2 Part of AAA domain AAA_18 PF13238.1 gi|549456202|ref|YP_008604961.1| - 5.9e-08 33.0 0.1 0.0041 17.4 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.1 gi|549456202|ref|YP_008604961.1| - 9e-08 32.2 0.0 0.012 15.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|549456202|ref|YP_008604961.1| - 5.9e-07 29.1 0.1 0.06 12.8 0.0 3.8 3 1 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|549456202|ref|YP_008604961.1| - 6.6e-07 28.7 0.6 0.034 13.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|549456202|ref|YP_008604961.1| - 7.9e-07 28.6 7.2 0.014 14.8 0.3 3.8 2 2 1 3 3 3 2 AAA domain KaiC PF06745.8 gi|549456202|ref|YP_008604961.1| - 9.2e-07 28.2 0.5 0.15 11.1 0.0 3.6 2 1 1 3 3 3 2 KaiC AAA_24 PF13479.1 gi|549456202|ref|YP_008604961.1| - 1.2e-06 28.2 0.1 0.011 15.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|549456202|ref|YP_008604961.1| - 2.6e-06 27.5 0.0 0.04 13.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|549456202|ref|YP_008604961.1| - 3.1e-06 27.3 0.0 0.052 13.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase PhoH PF02562.11 gi|549456202|ref|YP_008604961.1| - 1.4e-05 24.4 0.4 0.11 11.6 0.0 2.7 2 0 0 2 2 2 2 PhoH-like protein Vps4_C PF09336.5 gi|549456202|ref|YP_008604961.1| - 1.4e-05 24.9 0.2 0.034 14.0 0.0 3.4 4 0 0 4 4 2 1 Vps4 C terminal oligomerisation domain NACHT PF05729.7 gi|549456202|ref|YP_008604961.1| - 2.3e-05 24.1 0.1 0.69 9.5 0.0 3.8 4 0 0 4 4 4 2 NACHT domain DUF815 PF05673.8 gi|549456202|ref|YP_008604961.1| - 5.7e-05 22.1 0.0 0.17 10.7 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|549456202|ref|YP_008604961.1| - 7.9e-05 22.9 0.0 0.46 10.7 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.6 gi|549456202|ref|YP_008604961.1| - 0.00011 21.8 0.0 0.43 10.1 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|549456202|ref|YP_008604961.1| - 0.00013 20.9 0.1 0.16 10.8 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|549456202|ref|YP_008604961.1| - 0.00018 20.6 0.0 0.072 12.0 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|549456202|ref|YP_008604961.1| - 0.00033 20.4 0.2 4.4 6.9 0.0 4.2 2 1 1 3 3 3 0 NTPase UFD1 PF03152.9 gi|549456202|ref|YP_008604961.1| - 0.00073 18.7 0.1 0.0041 16.2 0.0 2.0 1 1 1 2 2 2 1 Ubiquitin fusion degradation protein UFD1 NB-ARC PF00931.17 gi|549456202|ref|YP_008604961.1| - 0.00093 18.1 0.0 0.34 9.7 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain SKI PF01202.17 gi|549456202|ref|YP_008604961.1| - 0.0026 17.6 0.0 2 8.2 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase UPF0079 PF02367.12 gi|549456202|ref|YP_008604961.1| - 0.0026 17.3 0.0 3.1 7.4 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_11 PF13086.1 gi|549456202|ref|YP_008604961.1| - 0.0032 17.0 0.0 2.4 7.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|549456202|ref|YP_008604961.1| - 0.0033 16.9 0.0 2.1 7.8 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|549456202|ref|YP_008604961.1| - 0.0043 16.6 0.0 4.1 6.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain Bac_DnaA PF00308.13 gi|549456202|ref|YP_008604961.1| - 0.0044 16.7 0.0 0.57 9.7 0.0 2.9 3 1 0 3 3 2 1 Bacterial dnaA protein T2SE PF00437.15 gi|549456202|ref|YP_008604961.1| - 0.0094 14.8 0.0 1.9 7.3 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein IPT PF01745.11 gi|549456202|ref|YP_008604961.1| - 0.014 14.5 0.1 1.9 7.6 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase ResIII PF04851.10 gi|549456202|ref|YP_008604961.1| - 0.019 14.8 0.0 8.1 6.2 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.11 gi|549456202|ref|YP_008604961.1| - 0.028 13.2 0.0 3.4 6.3 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.13 gi|549456202|ref|YP_008604961.1| - 0.057 12.9 0.0 3.2 7.2 0.0 2.5 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|549456202|ref|YP_008604961.1| - 0.065 12.7 0.0 6.7 6.3 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|549456202|ref|YP_008604961.1| - 0.08 12.3 2.7 14 4.9 0.1 3.8 3 2 1 4 4 2 0 AAA-like domain AAA_21 PF13304.1 gi|549456202|ref|YP_008604961.1| - 0.69 9.8 1.2 29 4.4 0.5 3.0 2 1 0 2 2 2 0 AAA domain EF1_GNE PF00736.14 gi|549456204|ref|YP_008604963.1| - 7.2e-20 70.4 0.7 7.7e-20 70.3 0.5 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3970 PF13113.1 gi|549456204|ref|YP_008604963.1| - 0.043 13.5 0.2 0.08 12.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) DUF1464 PF07318.7 gi|549456206|ref|YP_008604965.1| - 1.6e-125 418.4 0.1 1.8e-125 418.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) His_Phos_1 PF00300.17 gi|549456207|ref|YP_008604966.1| - 1e-11 45.1 0.0 2.6e-11 43.8 0.0 1.5 1 1 1 2 2 2 1 Histidine phosphatase superfamily (branch 1) DUF95 PF01944.12 gi|549456208|ref|YP_008604967.1| - 2.7e-22 79.2 13.9 4.5e-22 78.4 9.6 1.4 1 1 0 1 1 1 1 Integral membrane protein DUF95 DUF3815 PF12821.2 gi|549456208|ref|YP_008604967.1| - 0.9 9.4 8.3 0.42 10.5 1.4 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF3815) GCD14 PF08704.5 gi|549456209|ref|YP_008604968.1| - 5.1e-19 68.7 0.0 6.2e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|549456209|ref|YP_008604968.1| - 3.7e-09 36.6 0.1 6.3e-09 35.8 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|549456209|ref|YP_008604968.1| - 1.4e-07 32.0 0.0 1.8e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|549456209|ref|YP_008604968.1| - 7.5e-07 28.8 0.0 9.9e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|549456209|ref|YP_008604968.1| - 8e-07 28.7 0.0 1.2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|549456209|ref|YP_008604968.1| - 2.4e-06 26.7 0.0 3.5e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase UPF0020 PF01170.13 gi|549456209|ref|YP_008604968.1| - 0.00032 20.3 0.0 0.00059 19.4 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|549456209|ref|YP_008604968.1| - 0.0006 20.2 0.0 0.00094 19.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|549456209|ref|YP_008604968.1| - 0.00083 19.6 0.0 0.0012 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|549456209|ref|YP_008604968.1| - 0.0028 18.4 0.0 0.0045 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|549456209|ref|YP_008604968.1| - 0.0092 16.4 0.0 0.014 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|549456209|ref|YP_008604968.1| - 0.013 15.2 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|549456209|ref|YP_008604968.1| - 0.015 14.6 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain CBS PF00571.23 gi|549456210|ref|YP_008604969.1| - 8.2e-36 121.5 9.2 9.4e-19 66.9 0.5 2.2 2 0 0 2 2 2 2 CBS domain FTR1 PF03239.9 gi|549456211|ref|YP_008604970.1| - 2.1e-58 197.7 22.8 2.5e-58 197.4 15.8 1.0 1 0 0 1 1 1 1 Iron permease FTR1 family YfhO PF09586.5 gi|549456211|ref|YP_008604970.1| - 1.1 7.2 5.6 2.9 5.8 3.9 1.6 1 1 0 1 1 1 0 Bacterial membrane protein YfhO CcmD PF04995.9 gi|549456211|ref|YP_008604970.1| - 1.7 8.4 0.0 1.7 8.4 0.0 3.2 4 0 0 4 4 4 0 Heme exporter protein D (CcmD) Pox_L3_FP4 PF03339.9 gi|549456212|ref|YP_008604971.1| - 0.075 11.4 0.0 0.11 10.9 0.0 1.2 1 0 0 1 1 1 0 Poxvirus L3/FP4 protein Radical_SAM PF04055.16 gi|549456213|ref|YP_008604972.1| - 6.3e-18 65.4 0.0 1e-17 64.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HIT PF01230.18 gi|549456214|ref|YP_008604973.1| - 5.2e-23 81.4 0.0 4.5e-22 78.4 0.0 1.9 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|549456214|ref|YP_008604973.1| - 9.8e-11 41.9 0.0 1.7e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|549456214|ref|YP_008604973.1| - 0.0015 18.2 0.0 0.0022 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 BAGE PF08180.6 gi|549456214|ref|YP_008604973.1| - 1.2 8.9 4.4 2.1 8.1 3.1 1.4 1 0 0 1 1 1 0 B melanoma antigen family Thioredoxin PF00085.15 gi|549456215|ref|YP_008604974.1| - 4.5e-14 51.9 0.0 5.8e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|549456215|ref|YP_008604974.1| - 9.9e-12 45.0 0.9 7.7e-10 38.9 0.6 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|549456215|ref|YP_008604974.1| - 7.3e-05 22.4 0.0 0.00016 21.4 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin domain DSBA PF01323.15 gi|549456215|ref|YP_008604974.1| - 0.0023 17.5 0.2 0.34 10.4 0.0 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|549456215|ref|YP_008604974.1| - 0.0046 16.9 0.4 0.16 11.9 0.2 2.1 1 1 1 2 2 2 1 Thioredoxin Glutaredoxin PF00462.19 gi|549456215|ref|YP_008604974.1| - 0.0058 16.5 0.2 0.023 14.6 0.0 2.1 2 1 0 2 2 2 1 Glutaredoxin Redoxin PF08534.5 gi|549456215|ref|YP_008604974.1| - 0.014 14.9 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Redoxin MarC PF01914.12 gi|549456216|ref|YP_008604975.1| - 7.1e-34 116.7 12.3 8.8e-34 116.3 8.5 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein 4HBT PF03061.17 gi|549456217|ref|YP_008604976.1| - 8.9e-09 35.3 0.4 1.2e-08 34.9 0.3 1.2 1 0 0 1 1 1 1 Thioesterase superfamily MMPL PF03176.10 gi|549456218|ref|YP_008604977.1| - 1.1e-48 165.6 37.0 2.4e-28 98.8 5.9 2.9 3 0 0 3 3 3 2 MMPL family HU-DNA_bdg PF14848.1 gi|549456218|ref|YP_008604977.1| - 0.16 11.7 0.0 0.57 9.9 0.0 1.9 1 0 0 1 1 1 0 DNA-binding domain Amidohydro_2 PF04909.9 gi|549456219|ref|YP_008604978.1| - 1.7e-55 188.5 0.4 2.1e-55 188.2 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase HSDR_N PF04313.9 gi|549456220|ref|YP_008604979.1| - 2.4e-09 37.2 0.1 0.00021 21.0 0.0 2.5 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) adh_short PF00106.20 gi|549456222|ref|YP_008604981.1| - 1e-25 90.5 0.6 1.3e-25 90.2 0.4 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|549456222|ref|YP_008604981.1| - 8.1e-21 74.8 0.0 8.9e-21 74.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|549456222|ref|YP_008604981.1| - 8.2e-10 38.6 0.2 1.8e-09 37.5 0.1 1.6 1 1 1 2 2 2 1 KR domain DUF1776 PF08643.5 gi|549456222|ref|YP_008604981.1| - 0.14 11.3 0.0 0.17 10.9 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) TrmB PF01978.14 gi|549456223|ref|YP_008604982.1| - 2.1e-09 36.9 0.4 3.3e-09 36.3 0.3 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|549456223|ref|YP_008604982.1| - 4.5e-08 32.6 0.1 8.3e-08 31.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|549456223|ref|YP_008604982.1| - 3.3e-07 29.5 0.1 5.1e-07 28.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|549456223|ref|YP_008604982.1| - 4.5e-06 26.7 0.1 7.5e-06 26.0 0.1 1.4 1 1 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.2 gi|549456223|ref|YP_008604982.1| - 5.5e-06 26.1 0.0 8.5e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|549456223|ref|YP_008604982.1| - 5.7e-06 25.8 0.0 8.5e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|549456223|ref|YP_008604982.1| - 1.5e-05 24.5 0.1 4.3e-05 23.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|549456223|ref|YP_008604982.1| - 3.2e-05 23.6 0.0 4.7e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|549456223|ref|YP_008604982.1| - 3.6e-05 24.0 0.1 5.1e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|549456223|ref|YP_008604982.1| - 0.0005 20.1 0.0 0.00074 19.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|549456223|ref|YP_008604982.1| - 0.00057 19.3 0.0 0.00077 18.9 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit Sulfolobus_pRN PF05584.6 gi|549456223|ref|YP_008604982.1| - 0.0012 18.7 0.1 0.0016 18.3 0.0 1.2 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein PadR PF03551.9 gi|549456223|ref|YP_008604982.1| - 0.0023 17.6 0.1 0.0064 16.2 0.1 1.8 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|549456223|ref|YP_008604982.1| - 0.0075 15.9 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|549456223|ref|YP_008604982.1| - 0.01 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|549456223|ref|YP_008604982.1| - 0.025 14.6 0.0 0.037 14.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator EAP30 PF04157.11 gi|549456223|ref|YP_008604982.1| - 0.051 12.7 0.0 0.065 12.3 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family B-block_TFIIIC PF04182.7 gi|549456223|ref|YP_008604982.1| - 0.062 13.1 0.0 0.094 12.5 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC RNA_pol_Rpc34 PF05158.7 gi|549456223|ref|YP_008604982.1| - 0.073 12.2 0.0 0.078 12.1 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_29 PF13551.1 gi|549456223|ref|YP_008604982.1| - 0.085 13.0 0.1 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix DUF2250 PF10007.4 gi|549456223|ref|YP_008604982.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PaaX PF07848.7 gi|549456223|ref|YP_008604982.1| - 0.14 12.2 0.2 0.24 11.4 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein 2-Hacid_dh_C PF02826.14 gi|549456224|ref|YP_008604983.1| - 6e-59 198.1 0.0 8.1e-59 197.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|549456224|ref|YP_008604983.1| - 5.5e-28 97.0 0.0 6.4e-28 96.8 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|549456224|ref|YP_008604983.1| - 5.3e-06 26.3 0.0 1e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|549456224|ref|YP_008604983.1| - 0.0013 18.7 0.1 0.0048 16.8 0.0 1.9 2 0 0 2 2 2 1 TrkA-N domain IlvN PF07991.7 gi|549456224|ref|YP_008604983.1| - 0.0028 17.0 0.0 0.0048 16.2 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|549456224|ref|YP_008604983.1| - 0.037 13.8 0.1 0.3 10.8 0.0 2.3 2 1 0 2 2 2 0 ThiF family F420_oxidored PF03807.12 gi|549456224|ref|YP_008604983.1| - 0.092 13.1 0.0 0.22 11.9 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|549456224|ref|YP_008604983.1| - 0.11 13.0 0.0 0.33 11.4 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold TPP_enzyme_N PF02776.13 gi|549456225|ref|YP_008604984.1| - 5e-49 166.0 0.4 9.2e-49 165.2 0.3 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|549456225|ref|YP_008604984.1| - 7.9e-29 100.2 0.0 1.1e-27 96.4 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|549456225|ref|YP_008604984.1| - 3.5e-21 75.3 0.0 9.9e-21 73.9 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain ABC2_membrane PF01061.19 gi|549456226|ref|YP_008604985.1| - 2.2e-18 66.1 13.4 2.9e-18 65.8 9.3 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|549456226|ref|YP_008604985.1| - 2.7e-10 39.8 13.7 3.9e-10 39.2 9.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|549456226|ref|YP_008604985.1| - 2.9e-08 32.9 8.5 2.9e-08 32.9 5.9 1.6 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_6 PF06182.6 gi|549456226|ref|YP_008604985.1| - 3.2e-05 23.5 1.3 5.4e-05 22.8 0.9 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|549456227|ref|YP_008604986.1| - 2.3e-12 46.5 17.6 2.3e-12 46.5 12.2 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|549456227|ref|YP_008604986.1| - 0.0019 17.2 18.3 0.0019 17.2 12.7 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|549456227|ref|YP_008604986.1| - 0.55 9.0 11.5 0.38 9.5 6.7 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein Oxidored_q2 PF00420.19 gi|549456227|ref|YP_008604986.1| - 0.63 9.6 8.2 0.053 13.1 1.5 2.3 2 1 1 3 3 3 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABC_tran PF00005.22 gi|549456228|ref|YP_008604987.1| - 4.3e-26 91.8 0.0 6.6e-26 91.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549456228|ref|YP_008604987.1| - 1.2e-14 54.9 0.0 1.2e-08 35.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|549456228|ref|YP_008604987.1| - 2.3e-05 23.8 0.0 4.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|549456228|ref|YP_008604987.1| - 0.00026 21.0 0.6 0.0051 16.8 0.4 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|549456228|ref|YP_008604987.1| - 0.0059 16.3 3.7 0.0098 15.6 0.1 2.7 3 0 0 3 3 2 1 Part of AAA domain NTPase_1 PF03266.10 gi|549456228|ref|YP_008604987.1| - 0.0064 16.2 0.2 0.27 10.9 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_15 PF13175.1 gi|549456228|ref|YP_008604987.1| - 0.0085 15.1 0.0 1.4 7.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|549456228|ref|YP_008604987.1| - 0.012 15.9 0.0 0.017 15.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|549456228|ref|YP_008604987.1| - 0.012 15.5 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|549456228|ref|YP_008604987.1| - 0.013 16.3 0.0 0.13 13.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|549456228|ref|YP_008604987.1| - 0.021 15.0 0.0 0.055 13.6 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|549456228|ref|YP_008604987.1| - 0.038 13.6 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF4162 PF13732.1 gi|549456228|ref|YP_008604987.1| - 0.049 14.1 0.0 0.092 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_25 PF13481.1 gi|549456228|ref|YP_008604987.1| - 0.049 13.0 1.2 0.23 10.8 0.8 2.2 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|549456228|ref|YP_008604987.1| - 0.089 12.5 0.0 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|549456228|ref|YP_008604987.1| - 0.11 12.1 0.0 0.7 9.5 0.0 2.0 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.10 gi|549456228|ref|YP_008604987.1| - 0.14 10.7 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein HxlR PF01638.12 gi|549456229|ref|YP_008604988.1| - 2.6e-24 84.6 0.1 3.3e-24 84.3 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|549456229|ref|YP_008604988.1| - 0.0052 16.5 0.0 0.0082 15.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|549456229|ref|YP_008604988.1| - 0.0063 16.1 0.1 0.01 15.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4423 PF14394.1 gi|549456229|ref|YP_008604988.1| - 0.039 13.4 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Glyoxalase_2 PF12681.2 gi|549456230|ref|YP_008604989.1| - 6.1e-15 55.7 0.0 1.2e-08 35.4 0.0 2.3 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|549456230|ref|YP_008604989.1| - 4.5e-11 42.8 0.0 0.0003 20.7 0.1 2.9 3 1 0 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|549456230|ref|YP_008604989.1| - 9.8e-05 22.3 0.0 0.78 9.7 0.0 2.9 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Aldo_ket_red PF00248.16 gi|549456231|ref|YP_008604990.1| - 2.3e-65 220.2 0.0 2.6e-65 220.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Thioredox_DsbH PF03190.10 gi|549456232|ref|YP_008604991.1| - 2.9e-60 202.6 0.0 4.8e-60 201.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|549456232|ref|YP_008604991.1| - 3.9e-11 42.8 0.0 7.2e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like C5-epim_C PF06662.8 gi|549456232|ref|YP_008604991.1| - 0.014 14.7 0.0 0.072 12.3 0.0 2.1 3 0 0 3 3 3 0 D-glucuronyl C5-epimerase C-terminus Thioredoxin_2 PF13098.1 gi|549456232|ref|YP_008604991.1| - 0.043 14.0 0.0 0.092 12.9 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain DUF1680 PF07944.7 gi|549456232|ref|YP_008604991.1| - 0.21 9.7 0.1 1 7.5 0.0 2.1 2 1 0 2 2 2 0 Putative glycosyl hydrolase of unknown function (DUF1680) DUF998 PF06197.8 gi|549456233|ref|YP_008604992.1| - 4.6e-28 97.7 27.0 5.3e-28 97.5 18.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) EamA PF00892.15 gi|549456234|ref|YP_008604993.1| - 6.1e-18 65.0 29.2 1.4e-11 44.5 7.8 2.3 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|549456234|ref|YP_008604993.1| - 0.025 14.2 12.3 0.31 10.6 0.7 3.0 2 2 0 2 2 2 0 Triose-phosphate Transporter family EmrE PF13536.1 gi|549456234|ref|YP_008604993.1| - 0.03 14.5 1.2 0.03 14.5 0.8 3.6 2 2 2 4 4 4 0 Multidrug resistance efflux transporter IFRD PF05004.8 gi|549456234|ref|YP_008604993.1| - 0.49 9.4 1.9 0.76 8.7 1.3 1.2 1 0 0 1 1 1 0 Interferon-related developmental regulator (IFRD) GATase_6 PF13522.1 gi|549456235|ref|YP_008604994.1| - 3.8e-09 36.5 0.1 6.3e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|549456235|ref|YP_008604994.1| - 8.9e-05 21.3 0.0 0.00011 20.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II tRNA_edit PF04073.10 gi|549456236|ref|YP_008604995.1| - 2.7e-31 107.9 0.0 3.5e-31 107.6 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain DctM PF06808.7 gi|549456238|ref|YP_008604997.1| - 7.7e-89 298.1 45.7 7.7e-89 298.1 31.7 2.1 2 0 0 2 2 2 1 DctM-like transporters DUF3735 PF12537.3 gi|549456238|ref|YP_008604997.1| - 0.14 12.2 1.9 0.66 10.0 1.3 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3735) SBP_bac_3 PF00497.15 gi|549456239|ref|YP_008604998.1| - 0.041 13.1 0.0 1.6 7.9 0.0 2.5 2 1 1 3 3 3 0 Bacterial extracellular solute-binding proteins, family 3 TrbC PF04956.8 gi|549456240|ref|YP_008604999.1| - 0.056 13.4 0.6 0.09 12.7 0.4 1.3 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF1510 PF07423.6 gi|549456240|ref|YP_008604999.1| - 0.12 11.7 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Molydop_binding PF01568.16 gi|549456241|ref|YP_008605000.1| - 1.8e-24 85.6 0.4 3.3e-24 84.8 0.3 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|549456241|ref|YP_008605000.1| - 9.1e-24 83.9 0.2 2.7e-17 62.6 0.0 3.2 2 1 0 2 2 2 2 Molybdopterin oxidoreductase CDC48_N PF02359.13 gi|549456241|ref|YP_008605000.1| - 0.0031 17.4 0.3 0.012 15.5 0.0 2.0 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Molybdop_Fe4S4 PF04879.11 gi|549456241|ref|YP_008605000.1| - 0.0071 16.1 0.1 0.018 14.8 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Rieske PF00355.21 gi|549456242|ref|YP_008605001.1| - 7.7e-12 44.6 0.1 2.6e-11 42.9 0.0 1.9 2 1 0 2 2 2 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|549456242|ref|YP_008605001.1| - 0.014 15.3 4.9 0.029 14.3 3.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|549456242|ref|YP_008605001.1| - 0.16 11.1 6.4 0.31 10.2 4.4 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HTH_AsnC-type PF13404.1 gi|549456243|ref|YP_008605002.1| - 2.2e-13 49.5 0.9 3.7e-13 48.7 0.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|549456243|ref|YP_008605002.1| - 2.6e-12 45.9 0.2 4e-12 45.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|549456243|ref|YP_008605002.1| - 0.00025 20.6 0.0 0.00045 19.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|549456243|ref|YP_008605002.1| - 0.00056 19.5 0.1 0.0037 16.8 0.2 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|549456243|ref|YP_008605002.1| - 0.0007 19.2 0.0 0.0015 18.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|549456243|ref|YP_008605002.1| - 0.00084 18.9 0.1 0.0018 17.8 0.1 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|549456243|ref|YP_008605002.1| - 0.0015 17.9 0.1 0.0022 17.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|549456243|ref|YP_008605002.1| - 0.0022 17.7 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|549456243|ref|YP_008605002.1| - 0.0026 17.2 0.0 0.0046 16.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|549456243|ref|YP_008605002.1| - 0.0028 17.1 0.1 0.0067 15.9 0.0 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_DeoR PF08220.7 gi|549456243|ref|YP_008605002.1| - 0.0037 16.7 0.0 0.0055 16.2 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain FaeA PF04703.7 gi|549456243|ref|YP_008605002.1| - 0.011 15.8 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein Ribosomal_L24e PF01246.15 gi|549456243|ref|YP_008605002.1| - 0.013 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L24e HTH_27 PF13463.1 gi|549456243|ref|YP_008605002.1| - 0.022 15.0 0.1 0.036 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|549456243|ref|YP_008605002.1| - 0.037 14.1 0.0 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_23 PF13384.1 gi|549456243|ref|YP_008605002.1| - 0.052 13.2 0.1 0.093 12.4 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|549456243|ref|YP_008605002.1| - 0.074 12.9 0.0 0.38 10.7 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|549456243|ref|YP_008605002.1| - 0.092 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_39 PF14090.1 gi|549456243|ref|YP_008605002.1| - 0.12 11.9 0.1 0.66 9.4 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.17 gi|549456243|ref|YP_008605002.1| - 0.12 12.0 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 MarR family AhpC-TSA PF00578.16 gi|549456245|ref|YP_008605004.1| - 1e-09 38.1 0.0 6.9e-09 35.4 0.0 1.9 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|549456245|ref|YP_008605004.1| - 6.3e-08 32.2 0.0 1.1e-07 31.4 0.0 1.4 1 1 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|549456245|ref|YP_008605004.1| - 1.4e-07 31.5 0.1 2.8e-07 30.5 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|549456245|ref|YP_008605004.1| - 2.5e-07 30.8 0.0 5.5e-07 29.7 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|549456245|ref|YP_008605004.1| - 5.4e-06 26.0 0.0 2.6e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin SCO1-SenC PF02630.9 gi|549456245|ref|YP_008605004.1| - 0.00018 21.1 0.0 0.00043 19.9 0.0 1.5 2 0 0 2 2 2 1 SCO1/SenC Thioredoxin_7 PF13899.1 gi|549456245|ref|YP_008605004.1| - 0.019 14.9 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like TraF PF13728.1 gi|549456245|ref|YP_008605004.1| - 0.021 14.2 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein GSHPx PF00255.14 gi|549456245|ref|YP_008605004.1| - 0.026 13.8 0.0 0.042 13.2 0.0 1.3 1 0 0 1 1 1 0 Glutathione peroxidase RHH_1 PF01402.16 gi|549456246|ref|YP_008605005.1| - 2.8e-08 33.2 0.0 4.6e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.6 gi|549456246|ref|YP_008605005.1| - 0.00025 20.8 0.0 0.00044 20.0 0.0 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain DUF2191 PF09957.4 gi|549456246|ref|YP_008605005.1| - 0.0012 18.6 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2191) RHH_2 PF03693.9 gi|549456246|ref|YP_008605005.1| - 0.047 13.8 0.0 0.063 13.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) E1-E2_ATPase PF00122.15 gi|549456247|ref|YP_008605006.1| - 7.3e-37 126.6 1.5 7.3e-37 126.6 1.1 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|549456247|ref|YP_008605006.1| - 2e-30 106.7 0.1 5.1e-30 105.4 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|549456247|ref|YP_008605006.1| - 8.9e-13 48.8 0.0 4.6e-12 46.4 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|549456247|ref|YP_008605006.1| - 1.2e-10 41.4 0.3 4.2e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DrrA_P4M PF14860.1 gi|549456247|ref|YP_008605006.1| - 0.0061 16.3 0.5 0.8 9.4 0.0 2.2 2 0 0 2 2 2 2 DrrA phosphatidylinositol 4-phosphate binding domain GTP_EFTU_D2 PF03144.20 gi|549456247|ref|YP_008605006.1| - 0.068 13.2 2.8 0.64 10.1 0.0 3.4 4 0 0 4 4 4 0 Elongation factor Tu domain 2 DUF4131 PF13567.1 gi|549456248|ref|YP_008605007.1| - 0.012 15.0 0.2 0.012 15.0 0.1 2.9 2 2 0 2 2 2 0 Domain of unknown function (DUF4131) DUF3088 PF11287.3 gi|549456248|ref|YP_008605007.1| - 0.095 12.1 0.0 6.1 6.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3088) Peripla_BP_6 PF13458.1 gi|549456250|ref|YP_008605009.1| - 3e-35 122.1 0.0 3.6e-35 121.9 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|549456250|ref|YP_008605009.1| - 2.9e-15 55.9 0.0 3.4e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|549456250|ref|YP_008605009.1| - 1.2e-06 27.4 0.0 1.4e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_4 PF13407.1 gi|549456250|ref|YP_008605009.1| - 0.0074 15.6 0.1 0.027 13.8 0.0 1.8 1 1 0 2 2 2 1 Periplasmic binding protein domain Peripla_BP_6 PF13458.1 gi|549456251|ref|YP_008605010.1| - 3.5e-09 36.4 0.0 4e-09 36.2 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|549456251|ref|YP_008605010.1| - 0.0075 15.0 0.0 0.0083 14.9 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain Anticodon_1 PF08264.8 gi|549456251|ref|YP_008605010.1| - 0.072 12.8 0.0 0.092 12.4 0.0 1.1 1 0 0 1 1 1 0 Anticodon-binding domain of tRNA VSP PF03302.8 gi|549456252|ref|YP_008605011.1| - 0.046 12.3 0.5 0.046 12.3 0.4 1.1 1 0 0 1 1 1 0 Giardia variant-specific surface protein DUF347 PF03988.7 gi|549456252|ref|YP_008605011.1| - 0.055 13.3 1.4 0.07 13.0 1.0 1.1 1 0 0 1 1 1 0 Repeat of Unknown Function (DUF347) Rifin_STEVOR PF02009.11 gi|549456252|ref|YP_008605011.1| - 0.09 12.4 0.3 0.094 12.3 0.2 1.0 1 0 0 1 1 1 0 Rifin/stevor family TPPK_C PF12555.3 gi|549456252|ref|YP_008605011.1| - 5.2 6.8 7.9 6.9 6.4 5.5 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal BPD_transp_2 PF02653.11 gi|549456253|ref|YP_008605012.1| - 1e-12 47.6 11.4 1.2e-12 47.4 7.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Bax1-I PF01027.15 gi|549456253|ref|YP_008605012.1| - 0.09 12.3 11.4 0.14 11.7 7.9 1.3 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4199 PF13858.1 gi|549456253|ref|YP_008605012.1| - 1.3 8.9 11.4 0.099 12.5 2.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) MreD PF04093.7 gi|549456253|ref|YP_008605012.1| - 8.2 6.2 13.0 8.6 6.1 7.9 1.8 1 1 1 2 2 2 0 rod shape-determining protein MreD BPD_transp_2 PF02653.11 gi|549456254|ref|YP_008605013.1| - 7.3e-28 97.2 20.3 8.6e-28 97.0 14.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Pam17 PF08566.5 gi|549456254|ref|YP_008605013.1| - 0.02 14.5 3.1 0.024 14.3 1.7 1.5 1 1 0 1 1 1 0 Mitochondrial import protein Pam17 Trp_oprn_chp PF09534.5 gi|549456254|ref|YP_008605013.1| - 6.2 6.3 10.0 0.62 9.6 2.8 1.9 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4271 PF14093.1 gi|549456254|ref|YP_008605013.1| - 9.4 5.8 9.7 3.5 7.2 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4271) BPD_transp_2 PF02653.11 gi|549456255|ref|YP_008605014.1| - 1e-27 96.7 35.7 1.5e-27 96.2 24.8 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|549456256|ref|YP_008605015.1| - 8.8e-13 48.7 0.0 1e-12 48.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|549456256|ref|YP_008605015.1| - 0.00042 19.7 0.0 0.00057 19.3 0.0 1.2 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|549456256|ref|YP_008605015.1| - 0.008 15.7 0.0 0.0097 15.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|549456256|ref|YP_008605015.1| - 0.012 15.6 0.0 0.013 15.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|549456256|ref|YP_008605015.1| - 0.012 14.3 0.1 0.014 14.1 0.1 1.2 1 0 0 1 1 1 0 ArgK protein DUF258 PF03193.11 gi|549456256|ref|YP_008605015.1| - 0.023 13.9 0.0 0.023 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|549456256|ref|YP_008605015.1| - 0.026 14.8 0.0 0.026 14.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|549456256|ref|YP_008605015.1| - 0.034 13.9 0.6 0.044 13.5 0.2 1.4 1 1 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|549456256|ref|YP_008605015.1| - 0.1 12.2 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Archaeal ATPase Rad17 PF03215.10 gi|549456256|ref|YP_008605015.1| - 0.1 11.2 0.0 0.13 10.9 0.0 1.0 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MMR_HSR1 PF01926.18 gi|549456256|ref|YP_008605015.1| - 0.11 12.4 0.1 0.13 12.2 0.1 1.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.14 gi|549456256|ref|YP_008605015.1| - 0.15 11.2 0.1 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain ABC_tran PF00005.22 gi|549456257|ref|YP_008605016.1| - 0.00045 20.5 0.1 0.00053 20.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|549456258|ref|YP_008605017.1| - 2.2e-11 43.1 0.4 2.2e-11 43.1 0.3 1.7 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter DIM1 PF02966.11 gi|549456258|ref|YP_008605017.1| - 0.13 11.7 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Mitosis protein DIM1 ABC_tran PF00005.22 gi|549456259|ref|YP_008605018.1| - 2.3e-27 95.9 0.0 4.1e-27 95.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549456259|ref|YP_008605018.1| - 3.1e-10 40.5 0.0 1.2e-05 25.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|549456259|ref|YP_008605018.1| - 0.0003 21.1 0.4 0.00056 20.2 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|549456259|ref|YP_008605018.1| - 0.00037 19.9 0.2 0.00095 18.6 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|549456259|ref|YP_008605018.1| - 0.0019 17.4 0.0 0.52 9.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|549456259|ref|YP_008605018.1| - 0.0058 16.0 1.1 0.087 12.2 0.8 2.2 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|549456259|ref|YP_008605018.1| - 0.011 15.5 0.2 0.19 11.6 0.1 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|549456259|ref|YP_008605018.1| - 0.036 14.2 1.2 0.57 10.3 0.9 2.2 1 1 0 1 1 1 0 AAA domain BCA_ABC_TP_C PF12399.3 gi|549456259|ref|YP_008605018.1| - 0.11 12.1 0.4 0.3 10.8 0.3 1.8 1 1 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_15 PF13175.1 gi|549456259|ref|YP_008605018.1| - 0.14 11.2 0.0 6.8 5.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Aminotran_1_2 PF00155.16 gi|549456260|ref|YP_008605019.1| - 7.9e-39 133.6 0.0 9.6e-39 133.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|549456260|ref|YP_008605019.1| - 0.00042 19.5 0.0 0.00062 18.9 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|549456260|ref|YP_008605019.1| - 0.0011 17.7 0.0 0.003 16.3 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Alliinase_C PF04864.8 gi|549456260|ref|YP_008605019.1| - 0.15 10.7 0.0 0.35 9.4 0.0 1.6 1 1 0 1 1 1 0 Allinase ABC2_membrane PF01061.19 gi|549456261|ref|YP_008605020.1| - 4e-31 107.8 21.8 4e-31 107.8 15.1 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|549456261|ref|YP_008605020.1| - 8.1e-19 67.8 21.3 8.1e-19 67.8 14.8 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|549456261|ref|YP_008605020.1| - 1.9e-09 37.0 20.2 2.6e-09 36.6 14.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|549456261|ref|YP_008605020.1| - 9.5e-08 31.2 17.4 1.1e-07 30.9 12.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|549456262|ref|YP_008605021.1| - 2.9e-29 102.1 0.0 4.6e-29 101.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|549456262|ref|YP_008605021.1| - 9.5e-16 58.5 0.0 1.1e-10 41.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|549456262|ref|YP_008605021.1| - 0.00023 20.5 0.1 0.00044 19.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|549456262|ref|YP_008605021.1| - 0.00061 18.9 0.0 0.081 11.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF4162 PF13732.1 gi|549456262|ref|YP_008605021.1| - 0.00078 19.9 0.0 0.0013 19.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|549456262|ref|YP_008605021.1| - 0.0019 18.5 0.2 0.003 17.9 0.2 1.2 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|549456262|ref|YP_008605021.1| - 0.005 16.3 0.0 0.0081 15.6 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain KdpD PF02702.12 gi|549456262|ref|YP_008605021.1| - 0.0052 15.9 0.0 0.01 14.9 0.0 1.4 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain AAA PF00004.24 gi|549456262|ref|YP_008605021.1| - 0.0065 16.6 0.1 0.069 13.3 0.1 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_11 PF08279.7 gi|549456262|ref|YP_008605021.1| - 0.0091 15.6 0.0 0.027 14.0 0.0 1.8 1 0 0 1 1 1 1 HTH domain AAA_22 PF13401.1 gi|549456262|ref|YP_008605021.1| - 0.011 15.9 0.0 0.056 13.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|549456262|ref|YP_008605021.1| - 0.025 14.5 0.0 0.052 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.1 gi|549456262|ref|YP_008605021.1| - 0.028 14.4 0.0 0.2 11.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|549456262|ref|YP_008605021.1| - 0.036 13.6 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_5 PF07728.9 gi|549456262|ref|YP_008605021.1| - 0.052 13.2 0.3 2.8 7.6 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|549456262|ref|YP_008605021.1| - 0.066 12.3 0.0 0.23 10.5 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|549456262|ref|YP_008605021.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|549456262|ref|YP_008605021.1| - 0.11 12.4 0.0 0.38 10.6 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.10 gi|549456262|ref|YP_008605021.1| - 0.14 10.8 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein G-alpha PF00503.15 gi|549456262|ref|YP_008605021.1| - 0.22 10.1 0.0 0.25 9.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Flavin_Reduct PF01613.13 gi|549456263|ref|YP_008605022.1| - 2.1e-05 24.4 0.0 2.3e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Lactamase_B PF00753.22 gi|549456264|ref|YP_008605023.1| - 5.9e-20 71.7 3.2 8.6e-20 71.2 2.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|549456264|ref|YP_008605023.1| - 0.014 14.9 0.0 0.025 14.1 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain GSDH PF07995.6 gi|549456265|ref|YP_008605024.1| - 1.1e-84 284.3 0.0 1.4e-84 284.0 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.4 gi|549456265|ref|YP_008605024.1| - 0.016 15.1 3.1 0.04 13.9 2.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SGL PF08450.7 gi|549456265|ref|YP_008605024.1| - 0.037 13.4 0.0 2.7 7.3 0.0 2.4 3 0 0 3 3 3 0 SMP-30/Gluconolaconase/LRE-like region BPD_transp_2 PF02653.11 gi|549456266|ref|YP_008605025.1| - 2.4e-35 121.8 36.2 3e-35 121.4 25.1 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|549456267|ref|YP_008605026.1| - 5.8e-44 150.0 25.2 5.8e-44 150.0 17.4 2.1 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|549456268|ref|YP_008605027.1| - 3.3e-44 150.5 0.0 3.9e-30 104.9 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|549456268|ref|YP_008605027.1| - 1.4e-05 25.1 0.0 0.0035 17.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|549456268|ref|YP_008605027.1| - 0.00045 19.6 0.0 0.012 15.1 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|549456268|ref|YP_008605027.1| - 0.00053 18.6 0.9 0.11 11.0 0.1 3.4 3 1 0 3 3 3 1 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|549456268|ref|YP_008605027.1| - 0.0017 17.5 0.0 0.012 14.8 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|549456268|ref|YP_008605027.1| - 0.0024 17.3 0.2 4 6.7 0.0 3.0 3 0 0 3 3 3 2 AAA-like domain UPF0079 PF02367.12 gi|549456268|ref|YP_008605027.1| - 0.0025 17.4 0.1 0.019 14.5 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_23 PF13476.1 gi|549456268|ref|YP_008605027.1| - 0.01 16.1 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|549456268|ref|YP_008605027.1| - 0.011 15.9 0.8 0.19 11.8 0.3 2.7 2 1 0 2 2 1 0 AAA domain AAA_16 PF13191.1 gi|549456268|ref|YP_008605027.1| - 0.07 13.1 0.1 0.34 10.8 0.0 2.2 2 1 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|549456268|ref|YP_008605027.1| - 0.072 12.7 0.0 0.34 10.5 0.0 2.1 3 0 0 3 3 3 0 NACHT domain DUF3584 PF12128.3 gi|549456268|ref|YP_008605027.1| - 0.12 9.6 0.2 0.17 9.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_15 PF13175.1 gi|549456268|ref|YP_008605027.1| - 0.26 10.2 0.0 0.42 9.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.1 gi|549456268|ref|YP_008605027.1| - 0.32 9.4 0.0 0.44 8.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain Bmp PF02608.9 gi|549456269|ref|YP_008605028.1| - 4e-76 255.6 0.0 5.7e-76 255.1 0.0 1.3 1 1 0 1 1 1 1 Basic membrane protein Mucin PF01456.12 gi|549456269|ref|YP_008605028.1| - 0.017 14.8 3.6 0.029 14.1 2.5 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein TPP_enzyme_N PF02776.13 gi|549456269|ref|YP_008605028.1| - 0.054 12.9 0.1 0.65 9.4 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TusA PF01206.12 gi|549456270|ref|YP_008605029.1| - 6.5e-06 25.6 0.0 8.1e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Rhodanese PF00581.15 gi|549456271|ref|YP_008605030.1| - 1e-42 145.0 0.0 1.5e-25 89.7 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Radical_SAM PF04055.16 gi|549456272|ref|YP_008605031.1| - 3.2e-16 59.9 2.0 4.9e-16 59.3 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|549456272|ref|YP_008605031.1| - 4.6e-08 33.1 0.0 1.3e-07 31.6 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|549456272|ref|YP_008605031.1| - 3.4e-05 23.9 0.0 7.7e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Amidinotransf PF02274.12 gi|549456275|ref|YP_008605034.1| - 1.1e-41 142.7 0.0 1.3e-41 142.5 0.0 1.0 1 0 0 1 1 1 1 Amidinotransferase RAP PF08373.5 gi|549456275|ref|YP_008605034.1| - 0.018 14.8 0.0 10 6.0 0.0 3.1 3 0 0 3 3 3 0 RAP domain Hjc PF01870.13 gi|549456275|ref|YP_008605034.1| - 0.07 12.7 0.1 15 5.2 0.0 3.1 3 0 0 3 3 3 0 Archaeal holliday junction resolvase (hjc) HEM4 PF02602.10 gi|549456275|ref|YP_008605034.1| - 0.12 11.5 0.0 0.56 9.4 0.0 1.9 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD AMP-binding PF00501.23 gi|549456277|ref|YP_008605036.1| - 4.7e-89 298.6 0.0 6.3e-89 298.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|549456277|ref|YP_008605036.1| - 2.5e-25 89.1 0.6 5.8e-25 88.0 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain TFX_C PF14601.1 gi|549456277|ref|YP_008605036.1| - 0.096 12.4 0.0 0.44 10.3 0.0 2.1 3 0 0 3 3 3 0 DNA_binding protein, TFX, C-term Fer4_11 PF13247.1 gi|549456278|ref|YP_008605037.1| - 1.5e-30 104.9 14.6 2.8e-30 104.1 6.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|549456278|ref|YP_008605037.1| - 4.6e-18 65.3 27.8 5.9e-10 39.3 5.1 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|549456278|ref|YP_008605037.1| - 1.7e-16 59.3 37.2 6.1e-07 29.0 1.8 4.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4 PF00037.22 gi|549456278|ref|YP_008605037.1| - 2.5e-14 52.1 42.6 2.4e-08 33.2 2.1 5.8 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|549456278|ref|YP_008605037.1| - 1.2e-13 50.5 26.8 5.9e-08 32.3 5.9 2.8 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|549456278|ref|YP_008605037.1| - 1.3e-13 50.9 30.4 2.1e-09 37.5 6.9 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|549456278|ref|YP_008605037.1| - 4.7e-13 48.6 44.3 0.0002 21.6 1.9 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|549456278|ref|YP_008605037.1| - 5.3e-13 48.0 37.3 1.7e-06 27.5 1.1 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|549456278|ref|YP_008605037.1| - 7.3e-07 29.1 26.4 0.00011 22.1 5.1 3.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|549456278|ref|YP_008605037.1| - 2.6e-05 23.9 28.7 0.0011 18.7 6.2 3.4 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|549456278|ref|YP_008605037.1| - 5.7e-05 23.7 29.0 0.24 12.1 2.4 4.4 3 2 2 5 5 5 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|549456278|ref|YP_008605037.1| - 6.7e-05 23.2 22.0 0.013 15.8 1.5 4.4 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|549456278|ref|YP_008605037.1| - 0.0004 20.4 36.9 0.0063 16.7 1.8 4.6 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|549456278|ref|YP_008605037.1| - 0.001 19.3 28.1 1.1 9.6 1.4 4.3 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|549456278|ref|YP_008605037.1| - 0.0025 18.3 28.2 0.16 12.5 7.9 4.1 3 1 1 4 4 4 2 4Fe-4S single cluster domain stn_TNFRSF12A PF12191.3 gi|549456278|ref|YP_008605037.1| - 1.2 9.1 7.0 3.3 7.7 0.2 2.3 2 1 0 2 2 2 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain Fer4_13 PF13370.1 gi|549456278|ref|YP_008605037.1| - 5.2 7.5 27.3 0.15 12.5 2.4 4.3 4 0 0 4 4 4 0 4Fe-4S single cluster domain NrfD PF03916.9 gi|549456279|ref|YP_008605038.1| - 1.7e-71 241.2 20.6 2.5e-71 240.6 14.3 1.2 1 0 0 1 1 1 1 Polysulphide reductase, NrfD 7tm_1 PF00001.16 gi|549456279|ref|YP_008605038.1| - 0.0012 17.9 0.0 0.0024 17.0 0.0 1.5 1 0 0 1 1 1 1 7 transmembrane receptor (rhodopsin family) Molybdopterin PF00384.17 gi|549456280|ref|YP_008605039.1| - 8.8e-17 60.9 0.1 4e-13 48.8 0.0 2.4 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|549456280|ref|YP_008605039.1| - 2.7e-15 56.1 0.0 1.2e-14 54.0 0.0 2.1 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|549456280|ref|YP_008605039.1| - 1.3e-05 24.9 0.1 0.0021 17.8 0.1 2.4 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|549456280|ref|YP_008605039.1| - 0.02 14.8 0.1 0.044 13.7 0.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CDC48_N PF02359.13 gi|549456280|ref|YP_008605039.1| - 0.032 14.1 0.0 0.084 12.8 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Nitrate_red_del PF02613.10 gi|549456281|ref|YP_008605040.1| - 0.00086 19.1 0.4 0.0016 18.2 0.0 1.6 2 0 0 2 2 2 1 Nitrate reductase delta subunit GntR PF00392.16 gi|549456281|ref|YP_008605040.1| - 0.15 11.5 1.0 0.63 9.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MFS_1 PF07690.11 gi|549456282|ref|YP_008605041.1| - 4.1e-20 71.7 41.1 5.3e-20 71.4 28.5 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily PIN PF01850.16 gi|549456283|ref|YP_008605042.1| - 1.8e-21 76.7 1.4 3.9e-21 75.6 1.0 1.5 1 1 0 1 1 1 1 PIN domain Phage_HK97_TLTM PF06120.6 gi|549456283|ref|YP_008605042.1| - 0.031 13.6 0.0 0.043 13.1 0.0 1.2 1 0 0 1 1 1 0 Tail length tape measure protein DUF104 PF01954.11 gi|549456284|ref|YP_008605043.1| - 3.6e-11 42.9 3.7 4.4e-11 42.6 2.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Catalase-rel PF06628.7 gi|549456284|ref|YP_008605043.1| - 0.05 13.4 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Catalase-related immune-responsive PIN PF01850.16 gi|549456285|ref|YP_008605044.1| - 2.6e-21 76.1 0.7 3.1e-21 75.9 0.5 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|549456285|ref|YP_008605044.1| - 0.0054 17.3 0.0 0.0079 16.8 0.0 1.4 1 1 0 1 1 1 1 PIN domain DUF1426 PF07234.6 gi|549456285|ref|YP_008605044.1| - 0.094 12.4 0.1 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1426) DUF104 PF01954.11 gi|549456286|ref|YP_008605045.1| - 4.5e-18 65.0 3.9 5.2e-18 64.8 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Curto_V2 PF07325.6 gi|549456286|ref|YP_008605045.1| - 0.11 12.1 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Curtovirus V2 protein CcdA PF07362.7 gi|549456287|ref|YP_008605046.1| - 4.5e-07 29.6 0.5 6.6e-07 29.0 0.3 1.3 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.16 gi|549456287|ref|YP_008605046.1| - 0.00085 19.1 2.5 0.00085 19.1 1.8 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Hydant_A_N PF05378.8 gi|549456287|ref|YP_008605046.1| - 0.015 14.8 1.0 0.015 14.7 0.7 1.1 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region Phage_Gp14 PF10666.4 gi|549456287|ref|YP_008605046.1| - 0.018 14.9 0.4 0.02 14.7 0.2 1.1 1 0 0 1 1 1 0 Phage protein Gp14 DUF3725 PF12523.3 gi|549456287|ref|YP_008605046.1| - 0.54 10.3 2.1 0.65 10.1 0.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3725) PIN PF01850.16 gi|549456288|ref|YP_008605047.1| - 1.1e-06 28.9 0.2 1.7e-06 28.3 0.1 1.4 1 1 0 1 1 1 1 PIN domain DUF4411 PF14367.1 gi|549456288|ref|YP_008605047.1| - 0.04 13.6 0.3 0.25 11.0 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4411)