# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF2276 PF10040.4 gi|302347804|ref|YP_003815442.1| - 1.3e-15 57.6 0.0 2.1e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) HTH_28 PF13518.1 gi|302347805|ref|YP_003815443.1| - 0.0036 17.2 0.4 0.036 14.0 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|302347805|ref|YP_003815443.1| - 0.026 14.1 0.8 0.073 12.7 0.5 1.7 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|302347805|ref|YP_003815443.1| - 0.08 12.7 0.4 0.08 12.7 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Cas_Cas4 PF01930.12 gi|302347806|ref|YP_003815444.1| - 1.1e-15 57.9 0.0 1.3e-15 57.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|302347806|ref|YP_003815444.1| - 7.3e-07 28.8 0.0 1.2e-05 24.8 0.0 2.0 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.4 gi|302347807|ref|YP_003815445.1| - 1.4e-13 50.7 0.0 1.6e-13 50.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 PaaX_C PF08223.6 gi|302347807|ref|YP_003815445.1| - 0.0039 16.9 0.2 0.0042 16.7 0.1 1.1 1 0 0 1 1 1 1 PaaX-like protein C-terminal domain Cas_Cas1 PF01867.11 gi|302347808|ref|YP_003815446.1| - 4.4e-57 193.3 0.0 5e-57 193.1 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF911 PF06023.7 gi|302347809|ref|YP_003815447.1| - 5.8e-45 153.7 0.0 7.5e-45 153.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) Cas_Cas4 PF01930.12 gi|302347809|ref|YP_003815447.1| - 0.0083 16.0 0.0 0.69 9.8 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 Cas_Cmr3 PF09700.5 gi|302347810|ref|YP_003815448.1| - 1.2e-07 31.5 0.1 1.6e-06 27.7 0.0 2.1 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_Cmr3) Tub PF01167.13 gi|302347810|ref|YP_003815448.1| - 0.098 11.6 0.0 0.18 10.7 0.0 1.4 1 0 0 1 1 1 0 Tub family DUF3692 PF12469.3 gi|302347811|ref|YP_003815449.1| - 3.3e-29 101.4 0.0 1.6e-28 99.2 0.0 2.2 2 0 0 2 2 2 1 CRISPR-associated protein RAMPs PF03787.10 gi|302347812|ref|YP_003815450.1| - 3.1e-08 33.7 0.0 7.4e-08 32.4 0.0 1.6 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|302347813|ref|YP_003815451.1| - 0.00019 21.3 0.9 0.1 12.4 0.0 2.7 2 1 0 3 3 3 2 RAMP superfamily RAMPs PF03787.10 gi|302347815|ref|YP_003815453.1| - 1.6e-29 103.2 0.0 2e-29 103.0 0.0 1.1 1 0 0 1 1 1 1 RAMP superfamily Cas_APE2256 PF09651.5 gi|302347818|ref|YP_003815456.1| - 5e-21 74.8 0.1 7.1e-21 74.3 0.1 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF2014 PF09427.5 gi|302347820|ref|YP_003815458.1| - 0.13 11.4 0.0 0.14 11.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF2014) Sugar_tr PF00083.19 gi|302347821|ref|YP_003815459.1| - 8.9e-13 47.6 9.0 8.9e-13 47.6 6.3 2.4 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|302347821|ref|YP_003815459.1| - 3.8e-12 45.6 59.6 2e-09 36.6 16.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2107 PF09880.4 gi|302347821|ref|YP_003815459.1| - 0.94 9.4 8.6 1 9.3 0.1 3.3 3 0 0 3 3 3 0 Predicted membrane protein (DUF2107) ABC_tran PF00005.22 gi|302347822|ref|YP_003815460.1| - 3.5e-29 101.8 0.0 4.7e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302347822|ref|YP_003815460.1| - 6.8e-10 39.3 0.1 0.00013 22.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|302347822|ref|YP_003815460.1| - 0.00021 20.8 0.0 0.0005 19.6 0.0 1.8 1 1 0 1 1 1 1 AAA-like domain AAA_29 PF13555.1 gi|302347822|ref|YP_003815460.1| - 0.00075 18.9 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|302347822|ref|YP_003815460.1| - 0.051 13.9 0.0 0.079 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain TAFII28 PF04719.9 gi|302347822|ref|YP_003815460.1| - 0.088 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 hTAFII28-like protein conserved region AAA_30 PF13604.1 gi|302347822|ref|YP_003815460.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|302347822|ref|YP_003815460.1| - 0.12 12.5 0.0 6.3 7.0 0.0 2.8 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|302347822|ref|YP_003815460.1| - 0.13 12.0 0.0 0.32 10.7 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function DUF87 DEAD_assoc PF08494.6 gi|302347824|ref|YP_003815462.1| - 6.3e-58 195.5 0.0 1.4e-57 194.4 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|302347824|ref|YP_003815462.1| - 7.2e-31 106.9 0.0 3.6e-30 104.6 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|302347824|ref|YP_003815462.1| - 1.1e-13 50.7 0.0 8e-13 48.0 0.0 2.3 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|302347824|ref|YP_003815462.1| - 4e-05 23.5 0.0 0.00013 21.8 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DUF4130 PF13566.1 gi|302347824|ref|YP_003815462.1| - 0.0007 19.1 0.0 0.0024 17.4 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 SNF2_N PF00176.18 gi|302347824|ref|YP_003815462.1| - 0.0045 15.8 0.0 0.032 13.0 0.0 2.3 2 1 0 2 2 2 1 SNF2 family N-terminal domain AAA_16 PF13191.1 gi|302347824|ref|YP_003815462.1| - 0.0072 16.3 0.1 0.044 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|302347824|ref|YP_003815462.1| - 0.025 14.7 0.0 0.14 12.2 0.0 2.3 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|302347824|ref|YP_003815462.1| - 0.062 12.5 0.0 0.13 11.5 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DUF2208 PF09973.4 gi|302347825|ref|YP_003815463.1| - 1.3e-41 142.4 9.2 1.8e-41 141.9 6.4 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) SCP2 PF02036.12 gi|302347826|ref|YP_003815464.1| - 1.4e-16 60.6 0.0 1.6e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.1 gi|302347826|ref|YP_003815464.1| - 3.3e-06 27.0 0.0 4.8e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal Thiolase_N PF00108.18 gi|302347827|ref|YP_003815465.1| - 2e-17 63.0 1.7 2.3e-14 53.0 0.0 2.8 3 0 0 3 3 3 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|302347827|ref|YP_003815465.1| - 6.4e-09 35.2 2.7 7.8e-07 28.5 0.2 3.0 3 2 1 4 4 4 2 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|302347827|ref|YP_003815465.1| - 1.4e-07 31.3 9.4 1.4e-05 24.7 2.5 3.1 2 2 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|302347827|ref|YP_003815465.1| - 1.3e-05 24.7 2.3 0.0013 18.3 0.1 3.1 4 0 0 4 4 4 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|302347827|ref|YP_003815465.1| - 0.015 15.1 2.2 0.1 12.4 0.0 3.0 3 1 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain FAE1_CUT1_RppA PF08392.7 gi|302347827|ref|YP_003815465.1| - 0.021 13.9 0.0 0.045 12.8 0.0 1.5 2 0 0 2 2 2 0 FAE1/Type III polyketide synthase-like protein FtsA PF14450.1 gi|302347827|ref|YP_003815465.1| - 0.08 12.7 0.0 1.3 8.8 0.0 2.1 2 0 0 2 2 2 0 Cell division protein FtsA DUF35 PF01796.12 gi|302347828|ref|YP_003815466.1| - 1.3e-14 54.1 0.9 2e-14 53.5 0.7 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|302347828|ref|YP_003815466.1| - 9.4e-09 34.9 0.1 2.2e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) PNP_UDP_1 PF01048.15 gi|302347829|ref|YP_003815467.1| - 3.4e-21 75.2 0.4 1.8e-20 72.8 0.1 2.1 2 1 0 2 2 2 1 Phosphorylase superfamily DeoC PF01791.4 gi|302347830|ref|YP_003815468.1| - 3e-35 121.6 0.0 3.7e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase HTH_psq PF05225.11 gi|302347830|ref|YP_003815468.1| - 0.052 13.1 0.0 0.099 12.2 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain DNA_pol3_gamma3 PF12169.3 gi|302347830|ref|YP_003815468.1| - 0.058 13.1 0.3 0.52 10.0 0.0 2.5 1 1 1 2 2 2 0 DNA polymerase III subunits gamma and tau domain III DcuC PF03606.10 gi|302347830|ref|YP_003815468.1| - 0.11 10.7 0.1 0.17 10.1 0.1 1.2 1 0 0 1 1 1 0 C4-dicarboxylate anaerobic carrier ThiG PF05690.9 gi|302347830|ref|YP_003815468.1| - 0.23 10.4 4.3 0.084 11.9 0.3 2.1 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG YadA_head PF05658.9 gi|302347830|ref|YP_003815468.1| - 1.7 8.9 8.5 1.7 9.0 0.5 2.4 2 0 0 2 2 2 0 Head domain of trimeric autotransporter adhesin PfkB PF00294.19 gi|302347831|ref|YP_003815469.1| - 2.3e-49 168.1 0.0 2.7e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|302347831|ref|YP_003815469.1| - 2.7e-06 26.7 0.0 4.4e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase UvsW PF11637.3 gi|302347831|ref|YP_003815469.1| - 0.013 15.1 0.3 0.038 13.6 0.1 1.9 2 0 0 2 2 2 0 ATP-dependant DNA helicase UvsW Flavoprotein PF02441.14 gi|302347832|ref|YP_003815470.1| - 2.3e-22 79.0 0.0 3e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein YjeF_N PF03853.10 gi|302347833|ref|YP_003815471.1| - 0.065 12.8 0.0 0.094 12.3 0.0 1.5 1 1 0 1 1 1 0 YjeF-related protein N-terminus PhoU_div PF01865.11 gi|302347834|ref|YP_003815472.1| - 0.054 12.6 0.1 0.12 11.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function DUF47 tRNA_int_endo PF01974.12 gi|302347835|ref|YP_003815473.1| - 7.6e-24 83.3 0.0 1.1e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|302347835|ref|YP_003815473.1| - 1e-18 66.6 0.4 2.4e-18 65.4 0.0 1.8 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|302347835|ref|YP_003815473.1| - 0.00021 20.6 0.1 0.0005 19.4 0.0 1.8 2 0 0 2 2 2 1 tRNA-splicing endonuclease subunit sen54 N-term RPAP2_Rtr1 PF04181.8 gi|302347836|ref|YP_003815474.1| - 1.8 8.7 5.3 0.41 10.7 0.7 1.8 2 0 0 2 2 2 0 Rtr1/RPAP2 family Cation_efflux PF01545.16 gi|302347837|ref|YP_003815475.1| - 8.9e-19 67.6 10.1 1.2e-18 67.2 7.0 1.0 1 0 0 1 1 1 1 Cation efflux family DUF2976 PF11190.3 gi|302347837|ref|YP_003815475.1| - 0.53 9.8 3.2 1.8 8.1 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) P5CR_dimer PF14748.1 gi|302347838|ref|YP_003815476.1| - 3.4e-31 107.4 0.8 7.1e-31 106.4 0.6 1.6 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|302347838|ref|YP_003815476.1| - 8.2e-20 71.0 1.0 3.9e-19 68.8 1.0 2.0 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|302347838|ref|YP_003815476.1| - 4.4e-08 32.6 0.5 8.3e-08 31.8 0.3 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|302347838|ref|YP_003815476.1| - 4.2e-07 29.9 1.3 1.8e-06 27.8 0.5 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.12 gi|302347838|ref|YP_003815476.1| - 5.4e-06 25.4 0.0 8.3e-06 24.8 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|302347838|ref|YP_003815476.1| - 1.7e-05 24.6 5.5 0.0009 18.9 3.8 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|302347838|ref|YP_003815476.1| - 0.00031 20.1 0.1 0.00047 19.5 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding_2 PF13380.1 gi|302347838|ref|YP_003815476.1| - 0.00049 20.2 1.2 0.0028 17.7 0.5 2.1 2 0 0 2 2 2 1 CoA binding domain 2-Hacid_dh_C PF02826.14 gi|302347838|ref|YP_003815476.1| - 0.00055 19.1 0.2 0.0011 18.1 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|302347838|ref|YP_003815476.1| - 0.0012 18.8 0.6 0.0036 17.2 0.4 1.9 1 1 0 1 1 1 1 TrkA-N domain NAD_binding_3 PF03447.11 gi|302347838|ref|YP_003815476.1| - 0.003 17.9 0.5 0.0061 16.9 0.3 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|302347838|ref|YP_003815476.1| - 0.0031 17.9 0.5 0.018 15.5 0.2 2.3 2 0 0 2 2 2 1 CoA binding domain Semialdhyde_dh PF01118.19 gi|302347838|ref|YP_003815476.1| - 0.006 16.8 0.4 0.011 16.0 0.3 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|302347838|ref|YP_003815476.1| - 0.017 14.7 3.9 0.051 13.2 2.6 1.9 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|302347838|ref|YP_003815476.1| - 0.023 14.9 0.4 0.038 14.2 0.3 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding DapB_N PF01113.15 gi|302347838|ref|YP_003815476.1| - 0.025 14.4 0.8 0.046 13.6 0.5 1.6 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ADH_zinc_N PF00107.21 gi|302347838|ref|YP_003815476.1| - 0.027 14.0 0.4 0.49 9.9 0.1 2.3 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|302347838|ref|YP_003815476.1| - 0.031 14.3 0.3 0.052 13.6 0.2 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Rossmann-like PF10727.4 gi|302347838|ref|YP_003815476.1| - 0.031 14.0 1.6 0.061 13.0 1.1 1.5 1 0 0 1 1 1 0 Rossmann-like domain GFO_IDH_MocA PF01408.17 gi|302347838|ref|YP_003815476.1| - 0.046 14.2 0.1 0.095 13.2 0.1 1.7 2 0 0 2 2 1 0 Oxidoreductase family, NAD-binding Rossmann fold NmrA PF05368.8 gi|302347838|ref|YP_003815476.1| - 0.066 12.4 1.0 0.1 11.8 0.7 1.3 1 0 0 1 1 1 0 NmrA-like family Saccharop_dh PF03435.13 gi|302347838|ref|YP_003815476.1| - 0.066 12.1 0.6 0.087 11.7 0.5 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|302347838|ref|YP_003815476.1| - 0.091 13.0 0.1 0.28 11.4 0.0 1.8 2 0 0 2 2 2 0 XdhC Rossmann domain ThiF PF00899.16 gi|302347838|ref|YP_003815476.1| - 0.26 11.0 7.6 5.1 6.9 3.8 2.4 1 1 1 2 2 2 0 ThiF family adh_short PF00106.20 gi|302347838|ref|YP_003815476.1| - 0.35 10.7 6.7 0.2 11.5 2.5 2.1 1 1 0 2 2 2 0 short chain dehydrogenase Acetyltransf_1 PF00583.19 gi|302347839|ref|YP_003815477.1| - 9.9e-09 35.1 0.0 2.7e-08 33.7 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|302347839|ref|YP_003815477.1| - 7.3e-05 22.8 0.1 0.00017 21.6 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|302347839|ref|YP_003815477.1| - 9.9e-05 22.4 0.0 0.0002 21.4 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|302347839|ref|YP_003815477.1| - 0.00038 20.3 0.0 0.0015 18.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|302347839|ref|YP_003815477.1| - 0.0021 17.9 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|302347839|ref|YP_003815477.1| - 0.0099 15.4 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|302347839|ref|YP_003815477.1| - 0.064 13.0 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein ATP_bind_1 PF03029.12 gi|302347840|ref|YP_003815478.1| - 4.6e-56 190.0 0.0 5.3e-56 189.8 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|302347840|ref|YP_003815478.1| - 2.7e-07 30.1 0.1 5.3e-07 29.2 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|302347840|ref|YP_003815478.1| - 1.4e-05 24.5 0.1 0.0024 17.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|302347840|ref|YP_003815478.1| - 3.9e-05 24.4 0.0 8.6e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|302347840|ref|YP_003815478.1| - 9.9e-05 22.3 0.0 0.00014 21.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain MipZ PF09140.6 gi|302347840|ref|YP_003815478.1| - 0.00026 20.1 0.1 0.0019 17.3 0.1 2.0 1 1 0 1 1 1 1 ATPase MipZ AAA_33 PF13671.1 gi|302347840|ref|YP_003815478.1| - 0.00032 20.5 0.0 0.00052 19.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|302347840|ref|YP_003815478.1| - 0.00037 20.2 0.1 0.0031 17.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|302347840|ref|YP_003815478.1| - 0.00046 19.6 0.1 0.028 13.8 0.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|302347840|ref|YP_003815478.1| - 0.00052 19.1 0.0 0.0019 17.3 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_10 PF12846.2 gi|302347840|ref|YP_003815478.1| - 0.0011 18.5 0.0 0.0024 17.3 0.0 1.7 1 1 1 2 2 2 1 AAA-like domain PduV-EutP PF10662.4 gi|302347840|ref|YP_003815478.1| - 0.0012 18.2 0.1 1.2 8.6 0.0 3.5 3 1 1 4 4 4 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.1 gi|302347840|ref|YP_003815478.1| - 0.0017 18.6 0.0 0.0037 17.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|302347840|ref|YP_003815478.1| - 0.0019 18.1 0.0 0.0038 17.1 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|302347840|ref|YP_003815478.1| - 0.0019 18.0 0.0 0.0034 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|302347840|ref|YP_003815478.1| - 0.0049 16.0 0.2 0.018 14.2 0.1 1.9 1 1 0 1 1 1 1 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|302347840|ref|YP_003815478.1| - 0.0056 16.8 0.0 0.015 15.4 0.0 1.7 2 0 0 2 2 1 1 RNA helicase AAA_30 PF13604.1 gi|302347840|ref|YP_003815478.1| - 0.0074 15.8 0.1 0.014 14.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|302347840|ref|YP_003815478.1| - 0.0075 15.9 0.0 0.02 14.5 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|302347840|ref|YP_003815478.1| - 0.0076 15.9 0.1 0.021 14.4 0.0 1.7 2 0 0 2 2 2 1 NACHT domain ABC_tran PF00005.22 gi|302347840|ref|YP_003815478.1| - 0.0093 16.2 0.1 0.017 15.3 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_22 PF13401.1 gi|302347840|ref|YP_003815478.1| - 0.011 15.8 0.0 0.029 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|302347840|ref|YP_003815478.1| - 0.012 15.1 0.2 0.079 12.4 0.1 2.0 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.5 gi|302347840|ref|YP_003815478.1| - 0.012 14.8 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 GTP_EFTU PF00009.22 gi|302347840|ref|YP_003815478.1| - 0.013 14.9 0.0 0.062 12.7 0.0 2.1 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|302347840|ref|YP_003815478.1| - 0.021 13.6 0.0 0.13 11.0 0.0 2.0 2 0 0 2 2 2 0 ArgK protein AAA_28 PF13521.1 gi|302347840|ref|YP_003815478.1| - 0.023 14.6 0.0 0.063 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|302347840|ref|YP_003815478.1| - 0.023 13.6 0.0 0.039 12.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_PrkA PF08298.6 gi|302347840|ref|YP_003815478.1| - 0.024 13.3 0.0 0.04 12.5 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_29 PF13555.1 gi|302347840|ref|YP_003815478.1| - 0.054 13.0 0.1 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Fer4_NifH PF00142.13 gi|302347840|ref|YP_003815478.1| - 0.055 12.6 0.0 0.14 11.2 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.11 gi|302347840|ref|YP_003815478.1| - 0.061 12.5 0.3 0.095 11.9 0.2 1.3 1 0 0 1 1 1 0 PhoH-like protein APS_kinase PF01583.15 gi|302347840|ref|YP_003815478.1| - 0.088 12.4 0.0 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA PF00004.24 gi|302347840|ref|YP_003815478.1| - 0.098 12.8 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|302347840|ref|YP_003815478.1| - 0.1 11.5 0.0 0.16 10.9 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|302347840|ref|YP_003815478.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Mg_chelatase PF01078.16 gi|302347840|ref|YP_003815478.1| - 0.12 11.5 0.2 0.26 10.4 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|302347840|ref|YP_003815478.1| - 0.14 11.6 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ArsA_ATPase PF02374.10 gi|302347840|ref|YP_003815478.1| - 0.19 10.7 0.4 0.41 9.6 0.1 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase 4HBT PF03061.17 gi|302347841|ref|YP_003815479.1| - 0.00038 20.5 0.1 0.00065 19.7 0.0 1.4 1 1 0 1 1 1 1 Thioesterase superfamily Aldo_ket_red PF00248.16 gi|302347842|ref|YP_003815480.1| - 6.5e-69 231.8 0.0 7.3e-69 231.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MerR_1 PF13411.1 gi|302347842|ref|YP_003815480.1| - 0.025 14.3 0.0 0.079 12.7 0.0 1.9 1 0 0 1 1 1 0 MerR HTH family regulatory protein Sugar_tr PF00083.19 gi|302347843|ref|YP_003815481.1| - 2.1e-18 66.1 22.6 1.8e-16 59.8 3.2 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|302347843|ref|YP_003815481.1| - 5.3e-11 41.8 38.8 5.3e-11 41.8 26.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF162 PF02589.10 gi|302347845|ref|YP_003815483.1| - 1.7e-47 161.3 1.1 6.8e-47 159.4 0.7 1.8 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|302347845|ref|YP_003815483.1| - 3.8e-11 42.8 4.0 6.5e-11 42.1 2.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|302347845|ref|YP_003815483.1| - 2.3e-08 33.7 4.3 4.2e-08 32.8 3.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|302347845|ref|YP_003815483.1| - 3e-08 33.8 3.7 6.6e-08 32.7 2.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|302347845|ref|YP_003815483.1| - 5.6e-08 33.0 1.6 1.1e-07 32.0 1.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|302347845|ref|YP_003815483.1| - 8.4e-07 29.3 6.7 0.00039 20.7 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|302347845|ref|YP_003815483.1| - 1.3e-06 27.9 11.2 0.0026 17.5 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|302347845|ref|YP_003815483.1| - 7e-06 25.4 15.7 0.0026 17.3 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|302347845|ref|YP_003815483.1| - 1.2e-05 25.6 8.4 3.6e-05 24.0 5.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|302347845|ref|YP_003815483.1| - 5.5e-05 22.9 6.5 0.054 13.3 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|302347845|ref|YP_003815483.1| - 0.00051 20.1 12.0 0.009 16.2 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|302347845|ref|YP_003815483.1| - 0.00079 19.1 12.7 0.0094 15.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|302347845|ref|YP_003815483.1| - 0.0025 17.4 1.6 0.76 9.4 0.0 2.6 3 0 0 3 3 3 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Mitofilin PF09731.4 gi|302347845|ref|YP_003815483.1| - 0.016 13.9 0.0 1.7 7.1 0.0 2.0 1 1 1 2 2 2 0 Mitochondrial inner membrane protein Fer4_3 PF12798.2 gi|302347845|ref|YP_003815483.1| - 0.045 14.3 17.8 1.1 10.0 2.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|302347845|ref|YP_003815483.1| - 0.21 12.3 12.0 2.1 9.1 1.9 2.3 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain CCG PF02754.11 gi|302347846|ref|YP_003815484.1| - 3.4e-10 39.7 0.0 1.4e-08 34.5 0.0 2.3 2 0 0 2 2 2 1 Cysteine-rich domain CHAD PF05235.9 gi|302347846|ref|YP_003815484.1| - 1.2 8.6 7.6 4.6 6.7 4.9 2.1 1 1 0 1 1 1 0 CHAD domain HSBP1 PF06825.7 gi|302347847|ref|YP_003815485.1| - 0.015 14.8 0.4 0.029 13.9 0.2 1.5 1 0 0 1 1 1 0 Heat shock factor binding protein 1 COG2 PF06148.6 gi|302347847|ref|YP_003815485.1| - 0.018 14.9 1.5 0.023 14.5 0.5 1.6 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Tropomyosin_1 PF12718.2 gi|302347847|ref|YP_003815485.1| - 0.026 14.3 0.5 0.056 13.2 0.3 1.6 1 0 0 1 1 1 0 Tropomyosin like HOOK PF05622.7 gi|302347847|ref|YP_003815485.1| - 0.032 12.0 0.0 0.042 11.6 0.0 1.1 1 0 0 1 1 1 0 HOOK protein Med2 PF11214.3 gi|302347847|ref|YP_003815485.1| - 0.038 14.0 0.1 0.089 12.8 0.1 1.6 1 0 0 1 1 1 0 Mediator complex subunit 2 DUF607 PF04678.8 gi|302347847|ref|YP_003815485.1| - 0.044 13.7 0.0 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF607 DUF2937 PF11157.3 gi|302347847|ref|YP_003815485.1| - 0.047 13.0 0.1 0.3 10.4 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) Siah-Interact_N PF09032.6 gi|302347847|ref|YP_003815485.1| - 0.051 13.6 1.0 0.12 12.4 0.7 1.7 1 0 0 1 1 1 0 Siah interacting protein, N terminal Apolipoprotein PF01442.13 gi|302347847|ref|YP_003815485.1| - 0.053 13.0 4.0 0.54 9.7 1.7 2.3 2 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain IncA PF04156.9 gi|302347847|ref|YP_003815485.1| - 0.084 12.4 0.5 0.12 11.9 0.3 1.3 1 0 0 1 1 1 0 IncA protein Matrilin_ccoil PF10393.4 gi|302347847|ref|YP_003815485.1| - 0.1 11.9 0.3 0.36 10.2 0.2 2.0 1 1 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin RHH_1 PF01402.16 gi|302347847|ref|YP_003815485.1| - 0.22 11.4 0.2 0.22 11.4 0.1 2.8 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DUF2968 PF11180.3 gi|302347847|ref|YP_003815485.1| - 1.3 8.3 6.1 2.3 7.5 3.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) VIT1 PF01988.14 gi|302347848|ref|YP_003815486.1| - 4.3e-12 45.9 27.4 2e-07 30.7 6.0 2.5 2 1 1 3 3 3 2 VIT family Rubrerythrin PF02915.12 gi|302347848|ref|YP_003815486.1| - 8.2e-06 26.1 0.7 2e-05 24.9 0.5 1.6 1 1 0 1 1 1 1 Rubrerythrin NRDE-2 PF08424.5 gi|302347848|ref|YP_003815486.1| - 0.097 11.5 0.2 0.12 11.1 0.1 1.1 1 0 0 1 1 1 0 NRDE-2, necessary for RNA interference NUDIX PF00293.23 gi|302347849|ref|YP_003815487.1| - 1.6e-21 76.3 0.4 1.8e-21 76.1 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain Peptidase_S9 PF00326.16 gi|302347850|ref|YP_003815488.1| - 1.1e-49 168.5 0.1 1.5e-49 168.1 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|302347850|ref|YP_003815488.1| - 1.7e-18 65.8 10.0 1.7e-06 27.5 0.0 5.6 5 0 0 5 5 5 4 WD40-like Beta Propeller Repeat Abhydrolase_5 PF12695.2 gi|302347850|ref|YP_003815488.1| - 7.5e-12 45.2 0.0 1e-09 38.2 0.0 2.3 2 0 0 2 2 2 1 Alpha/beta hydrolase family DPPIV_N PF00930.16 gi|302347850|ref|YP_003815488.1| - 2.3e-07 29.7 0.2 0.11 11.0 0.0 4.4 3 1 1 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_6 PF12697.2 gi|302347850|ref|YP_003815488.1| - 7.8e-07 29.2 4.0 3.5e-06 27.0 0.7 3.1 2 2 0 2 2 2 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|302347850|ref|YP_003815488.1| - 9.7e-06 25.1 0.3 0.02 14.3 0.8 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|302347850|ref|YP_003815488.1| - 0.00033 19.2 0.1 0.039 12.4 0.1 2.9 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) DLH PF01738.13 gi|302347850|ref|YP_003815488.1| - 0.0029 16.9 0.0 0.0057 15.9 0.0 1.4 1 1 0 1 1 1 1 Dienelactone hydrolase family eIF2A PF08662.6 gi|302347850|ref|YP_003815488.1| - 0.059 13.0 0.0 0.99 9.0 0.0 2.8 3 1 1 4 4 4 0 Eukaryotic translation initiation factor eIF2A Pectate_lyase22 PF14583.1 gi|302347850|ref|YP_003815488.1| - 0.19 10.1 0.0 0.69 8.2 0.0 1.8 2 0 0 2 2 2 0 Oligogalacturonate lyase WD40 PF00400.27 gi|302347850|ref|YP_003815488.1| - 0.38 10.7 2.9 11 6.0 0.0 3.7 4 0 0 4 4 4 0 WD domain, G-beta repeat Peptidase_M1 PF01433.15 gi|302347851|ref|YP_003815489.1| - 1.9e-104 349.9 0.0 2.6e-104 349.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M1 Peptidase_MA_2 PF13485.1 gi|302347851|ref|YP_003815489.1| - 1.2e-17 64.1 0.5 1.2e-17 64.1 0.4 1.9 2 0 0 2 2 2 1 Peptidase MA superfamily ERAP1_C PF11838.3 gi|302347851|ref|YP_003815489.1| - 4.1e-11 42.7 2.3 6.8e-10 38.6 1.6 2.2 1 1 0 1 1 1 1 ERAP1-like C-terminal domain Helicase_IV_N PF12462.3 gi|302347851|ref|YP_003815489.1| - 0.023 14.3 0.0 0.1 12.2 0.0 2.1 2 0 0 2 2 2 0 DNA helicase IV / RNA helicase N terminal ATP-sulfurylase PF01747.12 gi|302347854|ref|YP_003815492.1| - 1.9e-85 285.5 0.0 2.5e-85 285.1 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|302347854|ref|YP_003815492.1| - 2.9e-49 166.5 0.0 1.1e-48 164.6 0.0 1.9 2 0 0 2 2 2 1 PUA-like domain RHH_1 PF01402.16 gi|302347855|ref|YP_003815493.1| - 0.00022 20.9 0.0 0.0013 18.5 0.0 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PG_binding_2 PF08823.6 gi|302347855|ref|YP_003815493.1| - 0.099 12.7 0.2 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain HisG_C PF08029.6 gi|302347855|ref|YP_003815493.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 HisG, C-terminal domain APS_kinase PF01583.15 gi|302347856|ref|YP_003815494.1| - 1.2e-59 200.4 0.0 1.4e-59 200.2 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_18 PF13238.1 gi|302347856|ref|YP_003815494.1| - 1.2e-11 45.0 0.0 2e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|302347856|ref|YP_003815494.1| - 2.8e-10 40.2 0.0 4.1e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|302347856|ref|YP_003815494.1| - 8e-10 38.3 0.0 9.2e-10 38.1 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_17 PF13207.1 gi|302347856|ref|YP_003815494.1| - 1.1e-08 35.8 0.1 1.7e-08 35.2 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|302347856|ref|YP_003815494.1| - 2.6e-05 23.8 0.6 8.7e-05 22.1 0.1 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|302347856|ref|YP_003815494.1| - 0.00017 21.1 0.1 0.00029 20.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|302347856|ref|YP_003815494.1| - 0.00025 20.7 0.0 0.00056 19.6 0.0 1.5 1 0 0 1 1 1 1 NTPase ArgK PF03308.11 gi|302347856|ref|YP_003815494.1| - 0.00029 19.7 0.0 0.00043 19.1 0.0 1.2 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|302347856|ref|YP_003815494.1| - 0.00029 20.3 0.0 0.00039 19.9 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|302347856|ref|YP_003815494.1| - 0.00031 19.9 0.0 0.00051 19.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin SKI PF01202.17 gi|302347856|ref|YP_003815494.1| - 0.00058 19.7 0.1 0.0024 17.7 0.0 1.9 1 1 0 1 1 1 1 Shikimate kinase CPT PF07931.7 gi|302347856|ref|YP_003815494.1| - 0.00069 19.2 0.1 0.0093 15.6 0.1 2.2 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA PF00004.24 gi|302347856|ref|YP_003815494.1| - 0.0015 18.7 0.0 0.0026 17.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|302347856|ref|YP_003815494.1| - 0.0026 17.2 0.0 0.0041 16.5 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|302347856|ref|YP_003815494.1| - 0.0027 17.7 0.0 0.005 16.8 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|302347856|ref|YP_003815494.1| - 0.0032 16.9 0.0 0.0047 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|302347856|ref|YP_003815494.1| - 0.0042 17.2 0.0 0.014 15.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|302347856|ref|YP_003815494.1| - 0.0062 15.9 0.0 0.014 14.7 0.0 1.6 1 0 0 1 1 1 1 Thymidylate kinase MobB PF03205.9 gi|302347856|ref|YP_003815494.1| - 0.0093 15.6 0.0 0.014 15.0 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Cytidylate_kin2 PF13189.1 gi|302347856|ref|YP_003815494.1| - 0.016 15.1 0.0 0.26 11.1 0.0 2.2 1 1 1 2 2 2 0 Cytidylate kinase-like family AAA_5 PF07728.9 gi|302347856|ref|YP_003815494.1| - 0.05 13.3 0.2 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.12 gi|302347856|ref|YP_003815494.1| - 0.05 13.1 0.0 0.073 12.5 0.0 1.4 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.1 gi|302347856|ref|YP_003815494.1| - 0.076 12.9 0.1 0.14 12.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain DUF1152 PF06626.7 gi|302347856|ref|YP_003815494.1| - 0.077 12.1 0.0 0.094 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1152) AAA_29 PF13555.1 gi|302347856|ref|YP_003815494.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain CbiA PF01656.18 gi|302347856|ref|YP_003815494.1| - 0.15 11.4 0.0 0.31 10.4 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF87 PF01935.12 gi|302347857|ref|YP_003815495.1| - 0.0015 18.4 0.4 0.0015 18.3 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF3408 PF11888.3 gi|302347857|ref|YP_003815495.1| - 0.015 15.2 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3408) PG_binding_2 PF08823.6 gi|302347857|ref|YP_003815495.1| - 0.018 15.1 0.2 0.033 14.2 0.1 1.5 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DUF2497 PF10691.4 gi|302347857|ref|YP_003815495.1| - 0.034 14.0 0.2 0.36 10.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2497) RHH_1 PF01402.16 gi|302347857|ref|YP_003815495.1| - 0.084 12.7 0.7 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Surf_Ag_VNR PF07244.10 gi|302347857|ref|YP_003815495.1| - 0.12 12.7 0.6 0.4 11.1 0.1 1.8 1 1 1 2 2 2 0 Surface antigen variable number repeat DUF2605 PF10792.4 gi|302347857|ref|YP_003815495.1| - 0.17 11.5 0.7 0.31 10.7 0.4 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2605) GED PF02212.13 gi|302347857|ref|YP_003815495.1| - 0.94 9.4 3.2 1 9.3 0.7 1.8 2 0 0 2 2 2 0 Dynamin GTPase effector domain GFO_IDH_MocA PF01408.17 gi|302347860|ref|YP_003815498.1| - 6.2e-22 78.3 0.1 1e-21 77.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|302347860|ref|YP_003815498.1| - 8e-09 35.2 0.1 1.8e-08 34.2 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|302347860|ref|YP_003815498.1| - 4.4e-05 23.7 0.1 7e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|302347860|ref|YP_003815498.1| - 0.027 14.8 0.0 0.046 14.1 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain RraB PF06877.6 gi|302347860|ref|YP_003815498.1| - 0.071 13.7 1.0 1.1 9.9 0.0 2.4 3 0 0 3 3 3 0 Regulator of ribonuclease activity B DUF188 PF02639.9 gi|302347860|ref|YP_003815498.1| - 0.077 12.4 0.0 0.24 10.8 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized BCR, YaiI/YqxD family COG1671 BPD_transp_1 PF00528.17 gi|302347861|ref|YP_003815499.1| - 9e-14 51.4 19.9 9e-14 51.4 13.8 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Gly-zipper_Omp PF13488.1 gi|302347861|ref|YP_003815499.1| - 0.33 10.6 3.8 0.81 9.3 2.7 1.6 1 0 0 1 1 1 0 Glycine zipper BPD_transp_1 PF00528.17 gi|302347862|ref|YP_003815500.1| - 3.1e-31 108.3 13.0 3.1e-31 108.3 9.0 2.7 3 0 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF4227 PF14004.1 gi|302347862|ref|YP_003815500.1| - 4.8 7.0 6.1 7.6 6.4 1.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF4227) SBP_bac_5 PF00496.17 gi|302347863|ref|YP_003815501.1| - 2.2e-18 66.2 6.8 4.5e-11 42.1 0.3 3.1 3 1 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|302347863|ref|YP_003815501.1| - 0.084 12.5 6.2 0.13 11.8 4.3 1.2 1 0 0 1 1 1 0 Rifin/stevor family Peptidase_M56 PF05569.6 gi|302347863|ref|YP_003815501.1| - 0.51 9.2 3.5 0.9 8.4 2.4 1.3 1 0 0 1 1 1 0 BlaR1 peptidase M56 Glyco_trans_1_3 PF13528.1 gi|302347864|ref|YP_003815502.1| - 6.6e-07 28.8 0.0 0.00011 21.5 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|302347864|ref|YP_003815502.1| - 1.6e-06 27.9 0.0 2.8e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Alg14 PF08660.6 gi|302347864|ref|YP_003815502.1| - 2.5e-05 24.3 0.0 4.4e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 Oligosaccharide biosynthesis protein Alg14 like Glyco_trans_4_4 PF13579.1 gi|302347864|ref|YP_003815502.1| - 3.9e-05 23.8 4.0 3.9e-05 23.8 2.8 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain YjeF_N PF03853.10 gi|302347864|ref|YP_003815502.1| - 0.092 12.3 0.0 0.25 10.9 0.0 1.7 1 0 0 1 1 1 0 YjeF-related protein N-terminus Epimerase PF01370.16 gi|302347865|ref|YP_003815503.1| - 1.5e-55 188.2 0.0 1.7e-55 188.0 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|302347865|ref|YP_003815503.1| - 1.1e-19 70.4 0.0 1.9e-19 69.6 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|302347865|ref|YP_003815503.1| - 7e-19 67.5 0.0 9.4e-19 67.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|302347865|ref|YP_003815503.1| - 6.6e-15 54.7 0.0 4.4e-14 52.0 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|302347865|ref|YP_003815503.1| - 1.5e-13 50.2 0.2 7.3e-11 41.4 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|302347865|ref|YP_003815503.1| - 9.6e-10 38.7 0.2 1.3e-09 38.3 0.2 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|302347865|ref|YP_003815503.1| - 2.2e-08 34.1 3.9 4.1e-08 33.3 2.7 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|302347865|ref|YP_003815503.1| - 4.3e-08 32.9 0.0 8e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit TrkA_N PF02254.13 gi|302347865|ref|YP_003815503.1| - 3.6e-05 23.7 0.1 0.00011 22.2 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.5 gi|302347865|ref|YP_003815503.1| - 0.0001 22.0 3.0 0.00031 20.4 2.1 1.7 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|302347865|ref|YP_003815503.1| - 0.00048 19.4 0.0 0.01 15.1 0.2 2.1 2 0 0 2 2 2 1 NmrA-like family UDPG_MGDP_dh_N PF03721.9 gi|302347865|ref|YP_003815503.1| - 0.042 13.2 0.0 0.082 12.2 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|302347865|ref|YP_003815503.1| - 0.12 12.2 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_tranf_2_3 PF13641.1 gi|302347866|ref|YP_003815504.1| - 7.1e-35 120.8 0.1 1.1e-34 120.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|302347866|ref|YP_003815504.1| - 1.7e-23 83.3 2.5 2.7e-23 82.6 1.7 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|302347866|ref|YP_003815504.1| - 1.5e-15 57.2 0.0 5.4e-15 55.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|302347866|ref|YP_003815504.1| - 7.4e-10 38.3 0.1 1.4e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Acetyltransf_7 PF13508.1 gi|302347868|ref|YP_003815506.1| - 2.4e-07 30.8 0.0 3.7e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|302347868|ref|YP_003815506.1| - 4.5e-07 29.7 0.0 8.3e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|302347868|ref|YP_003815506.1| - 4.8e-05 23.4 0.1 0.00011 22.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|302347868|ref|YP_003815506.1| - 0.0014 18.8 0.0 0.0022 18.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|302347868|ref|YP_003815506.1| - 0.0049 16.5 0.0 0.0083 15.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|302347868|ref|YP_003815506.1| - 0.069 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|302347868|ref|YP_003815506.1| - 0.11 12.4 0.1 0.38 10.6 0.1 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Glycos_transf_4 PF00953.16 gi|302347869|ref|YP_003815507.1| - 8e-30 103.7 18.5 2.2e-29 102.3 12.8 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 4 Glycos_transf_2 PF00535.21 gi|302347870|ref|YP_003815508.1| - 2.3e-13 50.1 0.0 3.2e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302347870|ref|YP_003815508.1| - 0.029 14.1 0.1 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 SfsA PF03749.8 gi|302347873|ref|YP_003815511.1| - 6.2e-49 166.3 0.0 7.4e-49 166.1 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein eIF-1a PF01176.14 gi|302347873|ref|YP_003815511.1| - 0.036 13.4 0.0 0.11 11.9 0.0 1.9 1 1 0 1 1 1 0 Translation initiation factor 1A / IF-1 Phosphodiest PF01663.17 gi|302347874|ref|YP_003815512.1| - 2.7e-47 161.8 0.0 3.3e-47 161.5 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|302347874|ref|YP_003815512.1| - 0.027 13.6 0.1 0.11 11.6 0.0 1.9 2 0 0 2 2 2 0 Sulfatase DUF229 PF02995.12 gi|302347874|ref|YP_003815512.1| - 0.22 9.8 0.0 0.31 9.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Baculo_PEP_C PF04513.7 gi|302347875|ref|YP_003815513.1| - 3.8e-12 46.2 27.3 1.1e-06 28.4 3.8 3.7 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|302347875|ref|YP_003815513.1| - 7.9e-08 32.4 1.4 0.38 11.0 0.2 3.7 2 2 1 3 3 3 3 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|302347875|ref|YP_003815513.1| - 9.2e-08 31.6 47.0 2.3e-06 27.0 22.1 2.9 1 1 1 2 2 2 2 Reovirus sigma C capsid protein WEMBL PF05701.6 gi|302347875|ref|YP_003815513.1| - 4.4e-07 28.7 0.2 6.2e-07 28.2 0.1 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light DUF1664 PF07889.7 gi|302347875|ref|YP_003815513.1| - 8.4e-07 28.8 0.1 0.033 13.9 0.1 3.5 1 1 1 3 3 3 2 Protein of unknown function (DUF1664) BLOC1_2 PF10046.4 gi|302347875|ref|YP_003815513.1| - 4.1e-06 26.8 0.7 0.39 10.8 0.0 3.8 2 2 2 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG2 PF06148.6 gi|302347875|ref|YP_003815513.1| - 1.7e-05 24.7 9.4 0.63 9.9 0.2 3.7 2 1 1 3 3 3 3 COG (conserved oligomeric Golgi) complex component, COG2 DUF869 PF05911.6 gi|302347875|ref|YP_003815513.1| - 1.9e-05 23.1 0.8 2.7e-05 22.6 0.6 1.0 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Dynamitin PF04912.9 gi|302347875|ref|YP_003815513.1| - 0.00013 20.8 0.2 0.00057 18.7 0.3 1.8 2 1 0 2 2 2 1 Dynamitin Laminin_II PF06009.7 gi|302347875|ref|YP_003815513.1| - 0.00031 20.4 9.6 0.043 13.5 2.7 3.5 2 2 1 3 3 3 1 Laminin Domain II AAA_13 PF13166.1 gi|302347875|ref|YP_003815513.1| - 0.00033 19.2 0.0 0.00047 18.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain FlaC_arch PF05377.6 gi|302347875|ref|YP_003815513.1| - 0.00085 19.1 6.6 8.9 6.2 0.0 4.9 2 2 3 5 5 5 0 Flagella accessory protein C (FlaC) DUF3407 PF11887.3 gi|302347875|ref|YP_003815513.1| - 0.0011 18.2 5.7 0.0011 18.2 4.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3407) DASH_Dad3 PF08656.5 gi|302347875|ref|YP_003815513.1| - 0.0014 18.2 3.3 0.49 10.1 0.0 4.4 1 1 3 5 5 4 1 DASH complex subunit Dad3 COG5 PF10392.4 gi|302347875|ref|YP_003815513.1| - 0.0034 17.3 12.0 2.4 8.1 0.1 3.4 1 1 3 4 4 4 1 Golgi transport complex subunit 5 MCPsignal PF00015.16 gi|302347875|ref|YP_003815513.1| - 0.0036 16.8 18.6 0.0036 16.8 12.9 2.2 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain CENP-F_leu_zip PF10473.4 gi|302347875|ref|YP_003815513.1| - 0.0051 16.6 0.0 0.068 13.0 0.0 2.2 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FUN14 PF04930.10 gi|302347875|ref|YP_003815513.1| - 0.0092 16.2 6.4 0.086 13.1 0.1 3.6 3 1 0 3 3 3 1 FUN14 family APG17 PF04108.7 gi|302347875|ref|YP_003815513.1| - 0.025 13.3 2.9 0.046 12.5 1.2 1.9 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF745 PF05335.8 gi|302347875|ref|YP_003815513.1| - 0.025 14.1 1.8 0.057 12.9 1.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF745) IFT57 PF10498.4 gi|302347875|ref|YP_003815513.1| - 0.028 13.1 0.1 1.1 7.9 0.1 2.1 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 TBPIP PF07106.8 gi|302347875|ref|YP_003815513.1| - 0.034 13.7 0.0 2.1 7.8 0.0 2.7 2 1 1 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF948 PF06103.6 gi|302347875|ref|YP_003815513.1| - 0.037 13.8 19.8 0.087 12.6 0.1 4.6 2 1 1 4 4 3 0 Bacterial protein of unknown function (DUF948) Spc7 PF08317.6 gi|302347875|ref|YP_003815513.1| - 0.039 12.6 0.0 0.31 9.6 0.0 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein WXG100 PF06013.7 gi|302347875|ref|YP_003815513.1| - 0.05 13.5 8.4 4.9 7.2 0.2 4.0 1 1 2 4 4 4 0 Proteins of 100 residues with WXG Gp58 PF07902.6 gi|302347875|ref|YP_003815513.1| - 0.061 11.5 25.9 0.74 7.9 17.9 2.4 1 1 0 1 1 1 0 gp58-like protein Syntaxin PF00804.20 gi|302347875|ref|YP_003815513.1| - 0.1 12.7 0.6 1.7 8.8 0.3 2.5 1 1 1 2 2 2 0 Syntaxin EzrA PF06160.7 gi|302347875|ref|YP_003815513.1| - 0.15 10.2 0.0 1.4 6.9 0.0 1.9 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Syntaxin-6_N PF09177.6 gi|302347875|ref|YP_003815513.1| - 0.15 12.4 3.2 2.2 8.7 0.8 3.0 1 1 2 3 3 3 0 Syntaxin 6, N-terminal MbeD_MobD PF04899.7 gi|302347875|ref|YP_003815513.1| - 0.22 11.4 4.5 1 9.2 0.0 3.2 2 2 1 3 3 3 0 MbeD/MobD like Filament PF00038.16 gi|302347875|ref|YP_003815513.1| - 0.32 10.3 0.1 3.4 7.0 0.1 2.4 1 1 0 1 1 1 0 Intermediate filament protein Fib_alpha PF08702.5 gi|302347875|ref|YP_003815513.1| - 0.38 10.8 0.5 2.8 8.0 0.3 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family RmuC PF02646.11 gi|302347875|ref|YP_003815513.1| - 0.46 9.2 2.2 19 3.9 0.1 2.9 2 1 1 3 3 3 0 RmuC family Laminin_I PF06008.9 gi|302347875|ref|YP_003815513.1| - 0.51 9.5 6.1 2.1 7.6 0.5 2.2 1 1 0 2 2 2 0 Laminin Domain I IncA PF04156.9 gi|302347875|ref|YP_003815513.1| - 0.97 8.9 0.0 0.97 8.9 0.0 3.9 2 1 0 4 4 3 0 IncA protein Prominin PF05478.6 gi|302347875|ref|YP_003815513.1| - 1.2 6.5 10.7 2.9 5.3 6.4 2.0 1 1 1 2 2 2 0 Prominin SF-assemblin PF06705.6 gi|302347875|ref|YP_003815513.1| - 1.4 7.9 0.0 33 3.5 0.0 2.2 1 1 1 2 2 2 0 SF-assemblin/beta giardin DUF3584 PF12128.3 gi|302347875|ref|YP_003815513.1| - 1.5 6.0 0.0 2 5.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ALIX_LYPXL_bnd PF13949.1 gi|302347875|ref|YP_003815513.1| - 2.1 7.2 5.2 0.41 9.5 0.9 1.6 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV Allexi_40kDa PF05549.6 gi|302347875|ref|YP_003815513.1| - 3.3 6.9 12.1 4.4 6.5 5.9 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein Nop14 PF04147.7 gi|302347875|ref|YP_003815513.1| - 3.9 5.2 4.3 5.6 4.7 3.0 1.1 1 0 0 1 1 1 0 Nop14-like family DnaJ-X PF14308.1 gi|302347875|ref|YP_003815513.1| - 4.4 6.5 3.5 32 3.7 2.5 2.2 1 1 0 1 1 1 0 X-domain of DnaJ-containing DASH_Duo1 PF08651.5 gi|302347875|ref|YP_003815513.1| - 4.7 6.8 8.7 7.9 6.1 0.7 3.4 2 1 2 4 4 3 0 DASH complex subunit Duo1 Sec34 PF04136.10 gi|302347875|ref|YP_003815513.1| - 6.1 6.5 3.9 6.8 6.3 0.3 2.5 2 1 1 3 3 3 0 Sec34-like family Vps51 PF08700.6 gi|302347875|ref|YP_003815513.1| - 8.6 6.2 12.8 5.6 6.8 0.3 3.5 3 1 1 4 4 3 0 Vps51/Vps67 TruD PF01142.13 gi|302347878|ref|YP_003815516.1| - 2.5e-43 148.2 0.0 2.9e-36 124.9 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) Glycos_transf_2 PF00535.21 gi|302347879|ref|YP_003815517.1| - 3.4e-27 95.1 0.0 4.5e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302347879|ref|YP_003815517.1| - 6.2e-26 91.5 0.0 1.2e-25 90.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|302347879|ref|YP_003815517.1| - 2.9e-12 46.7 0.2 2.9e-12 46.7 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|302347879|ref|YP_003815517.1| - 1.6e-11 43.7 0.5 7.4e-11 41.6 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|302347879|ref|YP_003815517.1| - 3e-07 29.8 0.0 7.3e-07 28.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|302347879|ref|YP_003815517.1| - 0.012 15.9 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 AA_permease_2 PF13520.1 gi|302347880|ref|YP_003815518.1| - 1.1e-32 113.1 44.7 2.4e-32 112.0 31.0 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|302347880|ref|YP_003815518.1| - 7.6e-26 90.4 48.0 1.1e-25 89.9 33.3 1.1 1 0 0 1 1 1 1 Amino acid permease Glycos_transf_2 PF00535.21 gi|302347881|ref|YP_003815519.1| - 8.8e-29 100.3 0.0 1.2e-28 99.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302347881|ref|YP_003815519.1| - 3.1e-11 43.5 0.0 4.8e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|302347881|ref|YP_003815519.1| - 0.00033 19.9 0.0 0.0005 19.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|302347881|ref|YP_003815519.1| - 0.049 13.9 0.0 0.097 13.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF58 PF01882.13 gi|302347882|ref|YP_003815520.1| - 3.8e-11 42.9 0.0 7e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF3391 PF11871.3 gi|302347882|ref|YP_003815520.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) Aa_trans PF01490.13 gi|302347882|ref|YP_003815520.1| - 2.3 6.6 4.4 3.4 6.0 3.0 1.1 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein AAA_3 PF07726.6 gi|302347883|ref|YP_003815521.1| - 3e-55 185.3 0.7 4.5e-55 184.8 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|302347883|ref|YP_003815521.1| - 2.3e-18 66.2 0.0 6.6e-18 64.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|302347883|ref|YP_003815521.1| - 5.6e-12 45.0 0.1 7.6e-07 28.2 0.0 2.1 1 1 1 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|302347883|ref|YP_003815521.1| - 5e-10 39.6 0.0 1.2e-09 38.4 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|302347883|ref|YP_003815521.1| - 8.8e-10 38.0 0.3 6.1e-09 35.2 0.2 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|302347883|ref|YP_003815521.1| - 5.2e-07 30.5 0.0 4.1e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|302347883|ref|YP_003815521.1| - 1.1e-05 25.7 0.0 2.3e-05 24.7 0.0 1.6 2 0 0 2 2 1 1 AAA domain Mg_chelatase PF01078.16 gi|302347883|ref|YP_003815521.1| - 1.5e-05 24.2 0.3 0.0019 17.4 0.1 2.6 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|302347883|ref|YP_003815521.1| - 2.5e-05 23.8 0.0 0.00011 21.6 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|302347883|ref|YP_003815521.1| - 9e-05 22.1 0.3 0.00023 20.8 0.2 1.9 1 1 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|302347883|ref|YP_003815521.1| - 9.7e-05 22.5 0.2 0.001 19.1 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|302347883|ref|YP_003815521.1| - 0.0002 21.3 0.0 0.0005 20.0 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|302347883|ref|YP_003815521.1| - 0.00023 21.1 0.5 0.0029 17.5 0.0 2.4 3 0 0 3 3 3 1 AAA ATPase domain UPF0079 PF02367.12 gi|302347883|ref|YP_003815521.1| - 0.00068 19.2 0.2 0.0017 17.9 0.1 1.6 2 0 0 2 2 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|302347883|ref|YP_003815521.1| - 0.0008 19.3 0.0 0.0018 18.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|302347883|ref|YP_003815521.1| - 0.0013 18.8 0.0 0.0036 17.4 0.0 1.8 2 0 0 2 2 1 1 RNA helicase NTPase_1 PF03266.10 gi|302347883|ref|YP_003815521.1| - 0.0026 17.4 0.4 0.038 13.6 0.0 2.7 2 1 1 3 3 3 1 NTPase AAA_25 PF13481.1 gi|302347883|ref|YP_003815521.1| - 0.0036 16.7 0.3 0.01 15.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|302347883|ref|YP_003815521.1| - 0.004 16.7 0.6 0.023 14.2 0.0 2.3 3 0 0 3 3 3 1 AAA domain NACHT PF05729.7 gi|302347883|ref|YP_003815521.1| - 0.0047 16.5 0.1 0.01 15.5 0.1 1.5 1 0 0 1 1 1 1 NACHT domain DUF258 PF03193.11 gi|302347883|ref|YP_003815521.1| - 0.005 16.0 0.0 0.008 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_11 PF13086.1 gi|302347883|ref|YP_003815521.1| - 0.0074 15.8 0.0 0.012 15.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|302347883|ref|YP_003815521.1| - 0.0077 16.2 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|302347883|ref|YP_003815521.1| - 0.011 14.9 0.7 0.027 13.5 0.1 1.9 2 1 1 3 3 3 0 Zeta toxin Sigma54_activ_2 PF14532.1 gi|302347883|ref|YP_003815521.1| - 0.014 15.4 0.1 0.029 14.4 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain CbiA PF01656.18 gi|302347883|ref|YP_003815521.1| - 0.015 14.7 0.6 0.075 12.4 0.1 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_23 PF13476.1 gi|302347883|ref|YP_003815521.1| - 0.016 15.5 0.0 0.024 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|302347883|ref|YP_003815521.1| - 0.02 14.3 0.0 0.039 13.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein KTI12 PF08433.5 gi|302347883|ref|YP_003815521.1| - 0.022 13.9 0.0 0.054 12.6 0.0 1.6 2 0 0 2 2 1 0 Chromatin associated protein KTI12 KAP_NTPase PF07693.9 gi|302347883|ref|YP_003815521.1| - 0.031 13.2 0.0 0.27 10.1 0.0 2.4 1 1 0 1 1 1 0 KAP family P-loop domain ABC_tran PF00005.22 gi|302347883|ref|YP_003815521.1| - 0.041 14.1 0.0 0.081 13.2 0.0 1.8 1 1 0 1 1 1 0 ABC transporter SKI PF01202.17 gi|302347883|ref|YP_003815521.1| - 0.042 13.7 0.1 0.082 12.7 0.1 1.4 1 0 0 1 1 1 0 Shikimate kinase AAA_14 PF13173.1 gi|302347883|ref|YP_003815521.1| - 0.042 13.7 0.0 0.083 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|302347883|ref|YP_003815521.1| - 0.046 13.0 0.0 0.098 12.0 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase AAA_24 PF13479.1 gi|302347883|ref|YP_003815521.1| - 0.051 13.1 0.1 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|302347883|ref|YP_003815521.1| - 0.12 11.5 0.6 0.82 8.8 0.0 2.2 3 0 0 3 3 2 0 PhoH-like protein Rad17 PF03215.10 gi|302347883|ref|YP_003815521.1| - 0.13 10.9 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|302347883|ref|YP_003815521.1| - 0.14 11.5 0.7 0.29 10.5 0.0 1.9 3 0 0 3 3 2 0 AAA-like domain DUF1641 PF07849.6 gi|302347884|ref|YP_003815522.1| - 1.7e-05 24.3 0.1 5.4e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) SBP_bac_5 PF00496.17 gi|302347885|ref|YP_003815523.1| - 1.9e-44 152.0 5.8 2.8e-44 151.4 4.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF3485 PF11984.3 gi|302347885|ref|YP_003815523.1| - 0.22 10.6 10.5 1.4 7.9 0.2 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF3485) ABC_tran PF00005.22 gi|302347886|ref|YP_003815524.1| - 1.5e-30 106.3 0.0 2.2e-30 105.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|302347886|ref|YP_003815524.1| - 2.9e-12 46.3 0.2 9.5e-12 44.7 0.1 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|302347886|ref|YP_003815524.1| - 2e-09 37.8 0.0 9.3e-06 25.8 0.0 2.3 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|302347886|ref|YP_003815524.1| - 1.8e-07 31.1 1.1 0.0012 18.9 0.0 3.2 3 1 0 3 3 3 2 TOBE domain AAA_15 PF13175.1 gi|302347886|ref|YP_003815524.1| - 1.1e-06 28.0 0.0 9.1e-05 21.6 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|302347886|ref|YP_003815524.1| - 4.8e-05 23.4 0.5 0.00019 21.4 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|302347886|ref|YP_003815524.1| - 5.9e-05 22.7 0.0 0.0002 21.0 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain SMC_N PF02463.14 gi|302347886|ref|YP_003815524.1| - 0.001 18.3 0.2 0.0038 16.4 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|302347886|ref|YP_003815524.1| - 0.0012 18.9 0.3 0.009 16.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|302347886|ref|YP_003815524.1| - 0.0014 18.2 0.0 0.0033 17.0 0.0 1.6 1 0 0 1 1 1 1 NACHT domain DUF258 PF03193.11 gi|302347886|ref|YP_003815524.1| - 0.0018 17.4 0.0 0.0032 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|302347886|ref|YP_003815524.1| - 0.0046 16.3 0.1 0.042 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|302347886|ref|YP_003815524.1| - 0.0063 16.2 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase ABC_ATPase PF09818.4 gi|302347886|ref|YP_003815524.1| - 0.011 14.3 0.3 2.5 6.6 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NTPase_1 PF03266.10 gi|302347886|ref|YP_003815524.1| - 0.012 15.3 0.1 0.23 11.1 0.0 2.6 3 0 0 3 3 3 0 NTPase AAA_30 PF13604.1 gi|302347886|ref|YP_003815524.1| - 0.013 15.0 0.1 0.032 13.7 0.0 1.6 2 0 0 2 2 1 0 AAA domain T2SE PF00437.15 gi|302347886|ref|YP_003815524.1| - 0.014 14.3 0.0 0.024 13.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.9 gi|302347886|ref|YP_003815524.1| - 0.024 14.3 0.1 0.073 12.7 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|302347886|ref|YP_003815524.1| - 0.036 13.6 0.0 0.08 12.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|302347886|ref|YP_003815524.1| - 0.058 14.2 0.3 0.21 12.4 0.1 2.2 2 1 0 2 2 1 0 AAA domain AAA_23 PF13476.1 gi|302347886|ref|YP_003815524.1| - 0.061 13.6 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|302347886|ref|YP_003815524.1| - 0.07 13.3 0.4 0.31 11.2 0.3 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|302347886|ref|YP_003815524.1| - 0.082 12.5 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|302347886|ref|YP_003815524.1| - 0.11 12.3 0.1 0.26 11.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|302347886|ref|YP_003815524.1| - 0.13 12.4 0.0 0.37 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.17 gi|302347887|ref|YP_003815525.1| - 2.7e-12 46.5 20.8 2.7e-12 46.5 14.4 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|302347888|ref|YP_003815526.1| - 4.6e-16 58.8 19.4 4.6e-16 58.8 13.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Peptidase_M50 PF02163.17 gi|302347888|ref|YP_003815526.1| - 2.7 6.9 6.1 28 3.6 4.3 2.5 1 1 0 1 1 1 0 Peptidase family M50 SBP_bac_8 PF13416.1 gi|302347889|ref|YP_003815527.1| - 4.7e-26 92.1 8.3 8.5e-26 91.3 5.7 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SoxE PF06525.6 gi|302347889|ref|YP_003815527.1| - 0.00082 18.6 11.4 0.00082 18.6 7.9 1.8 2 0 0 2 2 2 1 Sulfocyanin (SoxE) DUF1510 PF07423.6 gi|302347889|ref|YP_003815527.1| - 0.011 15.0 0.1 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) BCD PF15461.1 gi|302347889|ref|YP_003815527.1| - 0.018 14.4 1.5 0.032 13.6 1.0 1.4 1 0 0 1 1 1 0 Beta-carotene 15,15'-dioxygenase SpoIIIAH PF12685.2 gi|302347889|ref|YP_003815527.1| - 0.054 12.9 3.1 0.094 12.2 2.1 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein DUF1469 PF07332.6 gi|302347889|ref|YP_003815527.1| - 0.059 13.0 0.7 0.14 11.9 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Shisa PF13908.1 gi|302347889|ref|YP_003815527.1| - 0.19 11.8 5.3 0.45 10.6 3.7 1.6 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator E_Pc_C PF06752.7 gi|302347889|ref|YP_003815527.1| - 0.3 10.5 14.8 2.2 7.7 0.0 2.4 2 0 0 2 2 2 0 Enhancer of Polycomb C-terminus Mucin PF01456.12 gi|302347889|ref|YP_003815527.1| - 2 8.2 44.5 4.3 7.1 30.9 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein Phosphodiest PF01663.17 gi|302347890|ref|YP_003815528.1| - 1.1e-17 64.3 0.0 1.5e-17 63.9 0.0 1.1 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Lactamase_B PF00753.22 gi|302347892|ref|YP_003815530.1| - 1.6e-22 80.1 3.2 3.2e-22 79.1 2.2 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|302347892|ref|YP_003815530.1| - 0.0018 17.8 0.0 0.0024 17.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SIR2 PF02146.12 gi|302347893|ref|YP_003815531.1| - 6.5e-51 172.5 0.0 7.9e-51 172.2 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.17 gi|302347893|ref|YP_003815531.1| - 0.00023 20.9 0.1 0.027 14.2 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain zinc_ribbon_2 PF13240.1 gi|302347893|ref|YP_003815531.1| - 0.011 15.2 0.8 0.022 14.2 0.6 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|302347893|ref|YP_003815531.1| - 0.023 14.6 1.2 0.067 13.1 0.9 1.7 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|302347893|ref|YP_003815531.1| - 0.031 13.9 0.0 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|302347893|ref|YP_003815531.1| - 0.032 13.9 0.7 0.061 13.0 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|302347893|ref|YP_003815531.1| - 0.061 12.9 0.7 0.12 12.0 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|302347893|ref|YP_003815531.1| - 0.11 12.2 0.1 0.22 11.3 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|302347893|ref|YP_003815531.1| - 0.43 10.3 3.3 1.8 8.2 0.3 2.3 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|302347893|ref|YP_003815531.1| - 2.1 7.7 4.4 9.1 5.7 3.1 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2189 PF09955.4 gi|302347894|ref|YP_003815532.1| - 0.043 13.7 0.7 0.047 13.6 0.5 1.0 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2189) TGS PF02824.16 gi|302347895|ref|YP_003815533.1| - 2.5e-15 56.0 0.0 6.8e-15 54.6 0.0 1.8 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|302347895|ref|YP_003815533.1| - 1.4e-14 54.0 0.0 2.3e-14 53.3 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|302347895|ref|YP_003815533.1| - 7.2e-06 25.3 0.0 1.3e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|302347895|ref|YP_003815533.1| - 3e-05 24.4 0.0 0.00042 20.7 0.0 2.2 1 1 1 2 2 2 1 Miro-like protein Mg_chelatase PF01078.16 gi|302347895|ref|YP_003815533.1| - 0.05 12.7 0.0 0.073 12.2 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRPRB PF09439.5 gi|302347895|ref|YP_003815533.1| - 0.051 12.8 0.0 0.075 12.2 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|302347895|ref|YP_003815533.1| - 0.063 13.1 0.5 0.6 9.9 0.1 2.3 2 0 0 2 2 2 0 Dynamin family Antitoxin-MazE PF04014.13 gi|302347896|ref|YP_003815534.1| - 2.8e-12 46.0 2.5 3e-12 45.9 0.5 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE FeoA PF04023.9 gi|302347896|ref|YP_003815534.1| - 0.03 14.2 0.3 0.17 11.8 0.0 2.3 2 0 0 2 2 2 0 FeoA domain Germane PF10646.4 gi|302347896|ref|YP_003815534.1| - 0.052 13.7 0.5 3.2 7.9 0.1 2.5 2 1 0 2 2 2 0 Sporulation and spore germination POR PF01558.13 gi|302347897|ref|YP_003815535.1| - 3.1e-40 137.9 0.1 3.6e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|302347898|ref|YP_003815536.1| - 1.2e-16 59.5 17.1 2.1e-08 33.4 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|302347898|ref|YP_003815536.1| - 6.9e-13 48.2 8.6 9.3e-13 47.8 5.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|302347898|ref|YP_003815536.1| - 9.8e-13 47.6 24.3 8.3e-10 38.3 9.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|302347898|ref|YP_003815536.1| - 1.1e-10 41.6 9.3 1.7e-10 41.0 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|302347898|ref|YP_003815536.1| - 4.3e-10 38.9 13.1 3.5e-06 26.6 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|302347898|ref|YP_003815536.1| - 8.9e-10 38.0 17.6 2.1e-05 24.1 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|302347898|ref|YP_003815536.1| - 2e-09 38.0 23.5 3.6e-07 30.8 8.7 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|302347898|ref|YP_003815536.1| - 1.9e-08 34.4 11.3 3.2e-08 33.6 7.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|302347898|ref|YP_003815536.1| - 4.5e-08 33.0 8.6 6.1e-08 32.5 5.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|302347898|ref|YP_003815536.1| - 1.5e-06 28.6 8.9 0.0032 18.0 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|302347898|ref|YP_003815536.1| - 5.6e-05 23.4 10.1 0.00011 22.4 7.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|302347898|ref|YP_003815536.1| - 7.1e-05 22.8 12.9 0.0034 17.5 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|302347898|ref|YP_003815536.1| - 0.00027 21.2 14.6 0.0029 17.9 2.5 2.5 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|302347898|ref|YP_003815536.1| - 0.0015 18.9 13.2 0.014 15.8 1.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|302347898|ref|YP_003815536.1| - 0.011 16.1 17.5 0.13 12.9 4.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|302347898|ref|YP_003815536.1| - 0.4 10.6 6.9 4 7.3 4.8 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR_N PF01855.14 gi|302347899|ref|YP_003815537.1| - 9.7e-72 241.1 1.7 1.4e-71 240.6 1.2 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_C PF02775.16 gi|302347900|ref|YP_003815538.1| - 2.9e-24 85.3 0.1 4.3e-24 84.8 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AA_permease_2 PF13520.1 gi|302347901|ref|YP_003815539.1| - 1.8e-28 99.2 69.5 2.2e-28 98.9 47.5 1.7 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|302347901|ref|YP_003815539.1| - 6.2e-14 51.2 67.0 1.5e-13 49.9 45.0 2.1 1 1 0 1 1 1 1 Amino acid permease tRNA-synt_2 PF00152.15 gi|302347902|ref|YP_003815540.1| - 8.9e-91 304.1 0.0 1.1e-90 303.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|302347902|ref|YP_003815540.1| - 6.6e-10 38.7 0.1 1.3e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|302347902|ref|YP_003815540.1| - 2.5e-09 36.6 0.3 9.2e-06 25.0 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|302347902|ref|YP_003815540.1| - 0.0048 16.4 0.1 0.7 9.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetase class II core domain (G, H, P, S and T) Phage_cap_E PF03864.10 gi|302347902|ref|YP_003815540.1| - 0.045 12.6 0.0 0.073 11.9 0.0 1.3 1 0 0 1 1 1 0 Phage major capsid protein E GlutR_N PF05201.10 gi|302347904|ref|YP_003815542.1| - 3e-31 108.0 0.1 1.5e-30 105.7 0.0 2.1 2 1 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|302347904|ref|YP_003815542.1| - 4.2e-12 46.3 0.0 8e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|302347904|ref|YP_003815542.1| - 4.4e-08 32.9 0.3 8.2e-08 32.1 0.2 1.4 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|302347904|ref|YP_003815542.1| - 0.0014 18.9 0.1 0.0072 16.7 0.0 2.3 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|302347904|ref|YP_003815542.1| - 0.004 17.6 0.0 0.0075 16.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold K_oxygenase PF13434.1 gi|302347904|ref|YP_003815542.1| - 0.14 11.0 0.0 0.25 10.2 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) ALAD PF00490.16 gi|302347905|ref|YP_003815543.1| - 3.1e-134 446.9 0.0 3.5e-134 446.7 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase MFS_1 PF07690.11 gi|302347906|ref|YP_003815544.1| - 3.9e-17 61.9 47.7 8.2e-10 37.9 13.5 2.4 2 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|302347906|ref|YP_003815544.1| - 0.0011 17.7 2.9 0.0011 17.7 2.0 2.5 3 0 0 3 3 3 1 Sugar (and other) transporter NTP_transferase PF00483.18 gi|302347907|ref|YP_003815545.1| - 1.7e-12 47.1 0.0 2.8e-12 46.4 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|302347907|ref|YP_003815545.1| - 1.7e-11 43.0 16.0 0.00011 21.4 0.1 4.0 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|302347907|ref|YP_003815545.1| - 7.4e-11 42.3 0.2 1e-10 41.9 0.2 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|302347907|ref|YP_003815545.1| - 0.0093 15.5 11.5 2.8 7.5 0.7 3.9 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|302347907|ref|YP_003815545.1| - 0.01 15.3 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SIS PF01380.17 gi|302347908|ref|YP_003815546.1| - 7.3e-44 148.5 1.8 1.5e-27 95.7 0.2 2.7 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|302347908|ref|YP_003815546.1| - 4.6e-26 91.3 0.1 1.1e-25 90.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|302347908|ref|YP_003815546.1| - 2e-20 72.7 0.0 1.5e-19 69.9 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|302347908|ref|YP_003815546.1| - 2.7e-19 69.1 0.3 8.3e-14 51.0 0.0 2.4 1 1 1 2 2 2 2 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|302347908|ref|YP_003815546.1| - 4.6e-06 26.3 0.3 1.7e-05 24.5 0.1 2.1 2 0 0 2 2 2 1 SIS domain GATase_4 PF13230.1 gi|302347908|ref|YP_003815546.1| - 0.001 17.8 0.0 0.0015 17.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II PBP PF01161.15 gi|302347909|ref|YP_003815547.1| - 2e-42 144.4 0.0 2.4e-42 144.2 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein RNA_pol_Rpc34 PF05158.7 gi|302347910|ref|YP_003815548.1| - 0.00033 19.9 0.0 0.00084 18.6 0.0 1.5 1 1 1 2 2 2 1 RNA polymerase Rpc34 subunit MarR_2 PF12802.2 gi|302347910|ref|YP_003815548.1| - 0.0063 16.1 0.9 0.01 15.4 0.6 1.3 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|302347910|ref|YP_003815548.1| - 0.022 14.6 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC MarR PF01047.17 gi|302347910|ref|YP_003815548.1| - 0.034 13.8 0.3 0.05 13.3 0.2 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|302347910|ref|YP_003815548.1| - 0.054 13.1 0.2 0.098 12.3 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SRP19 PF01922.12 gi|302347911|ref|YP_003815549.1| - 2.6e-22 79.2 0.0 2.9e-22 79.0 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Radical_SAM PF04055.16 gi|302347912|ref|YP_003815550.1| - 4.7e-19 69.1 0.0 2.9e-17 63.3 0.0 2.8 1 1 1 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|302347912|ref|YP_003815550.1| - 0.00011 22.2 0.0 0.0002 21.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|302347912|ref|YP_003815550.1| - 0.00059 20.1 0.0 0.0012 19.1 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|302347912|ref|YP_003815550.1| - 0.0014 18.7 0.0 0.0025 17.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain MarR_2 PF12802.2 gi|302347913|ref|YP_003815551.1| - 0.089 12.4 0.9 1.1 8.9 0.0 2.9 3 0 0 3 3 3 0 MarR family Radical_SAM PF04055.16 gi|302347914|ref|YP_003815552.1| - 1.6e-22 80.4 0.0 3.3e-22 79.4 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|302347914|ref|YP_003815552.1| - 1.2e-09 38.3 0.1 2.9e-09 37.1 0.1 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|302347914|ref|YP_003815552.1| - 6.4e-07 29.5 0.0 1.4e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|302347914|ref|YP_003815552.1| - 2.9e-06 27.3 0.0 7.2e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain NAD_binding_7 PF13241.1 gi|302347915|ref|YP_003815553.1| - 6.1e-23 81.0 0.6 1.1e-22 80.1 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|302347915|ref|YP_003815553.1| - 0.00043 20.2 0.1 0.00069 19.5 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain Rossmann-like PF10727.4 gi|302347915|ref|YP_003815553.1| - 0.0011 18.6 1.1 0.0023 17.6 0.6 1.6 1 1 0 1 1 1 1 Rossmann-like domain OCD_Mu_crystall PF02423.10 gi|302347915|ref|YP_003815553.1| - 0.0021 16.9 0.2 0.0028 16.4 0.1 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family FAD_binding_2 PF00890.19 gi|302347915|ref|YP_003815553.1| - 0.0024 16.8 0.8 0.0029 16.5 0.5 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|302347915|ref|YP_003815553.1| - 0.0044 17.3 1.3 0.012 15.9 0.2 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|302347915|ref|YP_003815553.1| - 0.0046 16.9 1.4 0.0081 16.1 0.8 1.5 1 1 1 2 2 2 1 NADH(P)-binding ApbA PF02558.11 gi|302347915|ref|YP_003815553.1| - 0.015 14.7 0.1 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|302347915|ref|YP_003815553.1| - 0.018 15.4 0.7 0.037 14.4 0.4 1.6 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|302347915|ref|YP_003815553.1| - 0.03 14.4 0.1 0.046 13.8 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.1 gi|302347915|ref|YP_003815553.1| - 0.033 14.5 0.1 0.055 13.7 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|302347915|ref|YP_003815553.1| - 0.034 13.6 0.4 0.3 10.6 0.3 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|302347915|ref|YP_003815553.1| - 0.035 13.8 0.1 0.062 13.0 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.9 gi|302347915|ref|YP_003815553.1| - 0.04 13.7 0.1 0.074 12.9 0.2 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|302347915|ref|YP_003815553.1| - 0.049 13.0 0.1 0.084 12.2 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|302347915|ref|YP_003815553.1| - 0.055 13.1 0.4 0.092 12.3 0.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|302347915|ref|YP_003815553.1| - 0.074 13.5 0.1 0.11 12.9 0.1 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DAO PF01266.19 gi|302347915|ref|YP_003815553.1| - 0.088 11.6 1.1 0.13 11.1 0.5 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|302347915|ref|YP_003815553.1| - 0.093 11.8 0.0 0.21 10.7 0.0 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|302347915|ref|YP_003815553.1| - 0.1 11.9 0.4 0.27 10.5 0.3 1.8 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NmrA PF05368.8 gi|302347915|ref|YP_003815553.1| - 0.15 11.2 0.8 0.21 10.8 0.6 1.2 1 0 0 1 1 1 0 NmrA-like family Amidinotransf PF02274.12 gi|302347917|ref|YP_003815555.1| - 1.7e-38 132.3 0.0 2e-38 132.1 0.0 1.0 1 0 0 1 1 1 1 Amidinotransferase PNP_UDP_1 PF01048.15 gi|302347918|ref|YP_003815556.1| - 2.3e-38 131.4 0.5 3e-38 131.1 0.4 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily CN_hydrolase PF00795.17 gi|302347919|ref|YP_003815557.1| - 3.3e-15 55.9 0.0 4.8e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase 2-Hacid_dh_C PF02826.14 gi|302347920|ref|YP_003815558.1| - 1e-66 223.5 0.0 1.5e-66 222.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|302347920|ref|YP_003815558.1| - 5.8e-36 122.8 0.0 7.1e-36 122.6 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|302347920|ref|YP_003815558.1| - 0.00095 19.5 0.0 0.0022 18.3 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|302347920|ref|YP_003815558.1| - 0.0041 17.4 0.0 0.0094 16.2 0.0 1.6 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_binding_2 PF03446.10 gi|302347920|ref|YP_003815558.1| - 0.0056 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|302347920|ref|YP_003815558.1| - 0.011 15.0 0.0 0.034 13.5 0.0 1.8 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|302347920|ref|YP_003815558.1| - 0.024 14.4 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_10 PF13460.1 gi|302347920|ref|YP_003815558.1| - 0.052 13.5 0.0 0.59 10.1 0.0 2.2 2 0 0 2 2 2 0 NADH(P)-binding NAD_binding_7 PF13241.1 gi|302347920|ref|YP_003815558.1| - 0.11 12.8 0.0 0.43 10.8 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding TrkA_N PF02254.13 gi|302347920|ref|YP_003815558.1| - 0.12 12.3 0.2 0.35 10.8 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain NMT1 PF09084.6 gi|302347920|ref|YP_003815558.1| - 0.12 11.9 0.0 2.7 7.5 0.0 2.3 2 0 0 2 2 2 0 NMT1/THI5 like CCG PF02754.11 gi|302347921|ref|YP_003815559.1| - 3.6e-25 87.7 0.0 1.7e-11 43.9 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|302347921|ref|YP_003815559.1| - 5.5e-13 48.7 5.2 5.5e-13 48.7 3.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|302347921|ref|YP_003815559.1| - 1.3e-09 37.6 6.0 1.3e-09 37.6 4.2 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|302347921|ref|YP_003815559.1| - 6.2e-09 35.9 9.4 8e-09 35.6 3.5 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|302347921|ref|YP_003815559.1| - 7.6e-08 32.6 5.3 2.3e-07 31.0 3.7 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|302347921|ref|YP_003815559.1| - 5.2e-07 29.9 5.4 0.013 15.9 0.2 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|302347921|ref|YP_003815559.1| - 1.1e-06 28.9 7.1 4.8e-06 26.8 4.4 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|302347921|ref|YP_003815559.1| - 3.3e-06 26.6 16.2 0.00061 19.5 1.3 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|302347921|ref|YP_003815559.1| - 1.4e-05 24.7 14.0 0.00029 20.5 1.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Nitrate_red_gam PF02665.9 gi|302347921|ref|YP_003815559.1| - 9.1e-05 21.9 7.1 0.00015 21.1 4.9 1.3 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Fer4 PF00037.22 gi|302347921|ref|YP_003815559.1| - 0.00038 19.9 19.8 0.0011 18.4 0.6 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|302347921|ref|YP_003815559.1| - 0.00045 20.7 3.9 0.65 10.6 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|302347921|ref|YP_003815559.1| - 0.00069 19.4 6.3 0.25 11.2 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|302347921|ref|YP_003815559.1| - 0.0032 17.6 18.3 0.0082 16.3 1.4 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|302347921|ref|YP_003815559.1| - 0.057 14.1 13.8 1.4 9.6 1.7 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|302347921|ref|YP_003815559.1| - 1.8 9.0 12.3 2.9 8.3 2.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain HSP20 PF00011.16 gi|302347922|ref|YP_003815560.1| - 2.3e-09 37.0 0.0 3e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family IMS_C PF11799.3 gi|302347922|ref|YP_003815560.1| - 0.0011 18.8 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain CS PF04969.11 gi|302347922|ref|YP_003815560.1| - 0.064 13.8 0.0 0.13 12.7 0.0 1.5 1 1 0 1 1 1 0 CS domain PAC2 PF09754.4 gi|302347923|ref|YP_003815561.1| - 5.2e-26 91.8 0.1 6.4e-26 91.5 0.1 1.0 1 0 0 1 1 1 1 PAC2 family Fer4_13 PF13370.1 gi|302347924|ref|YP_003815562.1| - 3.5e-17 62.5 2.7 4.6e-17 62.1 1.9 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|302347924|ref|YP_003815562.1| - 3.7e-15 56.2 3.3 4.2e-15 56.0 2.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|302347924|ref|YP_003815562.1| - 0.017 15.3 0.8 0.027 14.7 0.6 1.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|302347924|ref|YP_003815562.1| - 0.18 11.4 1.3 1.9 8.2 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|302347924|ref|YP_003815562.1| - 0.86 9.5 5.0 1.2 9.1 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Gln-synt_C PF00120.19 gi|302347925|ref|YP_003815563.1| - 1.7e-87 292.8 0.0 2.3e-87 292.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|302347925|ref|YP_003815563.1| - 6.2e-17 60.9 0.0 1.4e-16 59.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Antitoxin-MazE PF04014.13 gi|302347926|ref|YP_003815564.1| - 9.8e-11 41.1 0.1 1.7e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Claudin_2 PF13903.1 gi|302347927|ref|YP_003815565.1| - 0.027 14.1 0.4 0.047 13.3 0.3 1.3 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction HsbA PF12296.3 gi|302347927|ref|YP_003815565.1| - 0.041 13.7 2.0 0.061 13.1 0.1 2.1 2 0 0 2 2 2 0 Hydrophobic surface binding protein A LAGLIDADG_WhiA PF14527.1 gi|302347927|ref|YP_003815565.1| - 0.062 13.1 0.3 0.66 9.8 0.0 2.1 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain DNMT1-RFD PF12047.3 gi|302347927|ref|YP_003815565.1| - 0.18 11.5 2.2 0.45 10.1 0.9 1.9 2 0 0 2 2 2 0 Cytosine specific DNA methyltransferase replication foci domain Cytidylate_kin2 PF13189.1 gi|302347928|ref|YP_003815566.1| - 6.9e-21 74.9 0.0 7.4e-19 68.3 0.0 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|302347928|ref|YP_003815566.1| - 9.3e-15 55.0 0.0 1.6e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|302347928|ref|YP_003815566.1| - 6.7e-13 49.5 0.1 1.2e-12 48.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|302347928|ref|YP_003815566.1| - 1e-06 28.7 0.4 1.5e-05 24.9 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|302347928|ref|YP_003815566.1| - 2.4e-05 24.3 0.0 3.2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SKI PF01202.17 gi|302347928|ref|YP_003815566.1| - 4.4e-05 23.4 0.1 0.00028 20.7 0.1 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_19 PF13245.1 gi|302347928|ref|YP_003815566.1| - 6e-05 22.7 0.1 0.00016 21.3 0.1 1.7 1 1 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|302347928|ref|YP_003815566.1| - 8.5e-05 22.6 0.0 0.00012 22.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|302347928|ref|YP_003815566.1| - 0.00023 20.4 0.0 0.00034 19.9 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|302347928|ref|YP_003815566.1| - 0.00029 19.9 0.1 0.00067 18.7 0.0 1.6 2 0 0 2 2 1 1 Zeta toxin AAA_28 PF13521.1 gi|302347928|ref|YP_003815566.1| - 0.00049 20.0 0.0 0.00078 19.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|302347928|ref|YP_003815566.1| - 0.0013 18.3 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|302347928|ref|YP_003815566.1| - 0.0015 18.7 0.0 0.0027 17.8 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|302347928|ref|YP_003815566.1| - 0.0016 17.9 0.0 0.0026 17.2 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family ADK PF00406.17 gi|302347928|ref|YP_003815566.1| - 0.0016 18.3 0.0 0.0025 17.6 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase RNA_helicase PF00910.17 gi|302347928|ref|YP_003815566.1| - 0.0062 16.6 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_25 PF13481.1 gi|302347928|ref|YP_003815566.1| - 0.012 15.0 0.0 0.044 13.1 0.0 1.9 2 1 1 3 3 3 0 AAA domain AAA_10 PF12846.2 gi|302347928|ref|YP_003815566.1| - 0.012 15.0 0.0 0.023 14.1 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain Viral_helicase1 PF01443.13 gi|302347928|ref|YP_003815566.1| - 0.013 15.0 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|302347928|ref|YP_003815566.1| - 0.016 14.8 0.1 0.091 12.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|302347928|ref|YP_003815566.1| - 0.018 14.5 0.0 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Cytidylate_kin PF02224.13 gi|302347928|ref|YP_003815566.1| - 0.019 14.4 0.2 0.041 13.3 0.1 1.5 1 1 1 2 2 2 0 Cytidylate kinase AAA_5 PF07728.9 gi|302347928|ref|YP_003815566.1| - 0.021 14.5 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF2075 PF09848.4 gi|302347928|ref|YP_003815566.1| - 0.025 13.5 0.0 0.034 13.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ArgK PF03308.11 gi|302347928|ref|YP_003815566.1| - 0.027 13.2 0.0 0.045 12.5 0.0 1.3 1 0 0 1 1 1 0 ArgK protein dNK PF01712.14 gi|302347928|ref|YP_003815566.1| - 0.029 14.2 0.1 0.046 13.6 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase PAZ PF02170.17 gi|302347928|ref|YP_003815566.1| - 0.034 13.4 0.0 0.045 13.0 0.0 1.2 1 0 0 1 1 1 0 PAZ domain CobU PF02283.11 gi|302347928|ref|YP_003815566.1| - 0.04 13.3 0.2 0.072 12.5 0.1 1.6 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_14 PF13173.1 gi|302347928|ref|YP_003815566.1| - 0.04 13.8 0.0 0.062 13.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain CPT PF07931.7 gi|302347928|ref|YP_003815566.1| - 0.044 13.4 0.1 1.8 8.1 0.1 2.4 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein NTPase_1 PF03266.10 gi|302347928|ref|YP_003815566.1| - 0.048 13.3 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 NTPase Thymidylate_kin PF02223.12 gi|302347928|ref|YP_003815566.1| - 0.05 12.9 0.1 14 5.0 0.0 2.8 2 1 1 3 3 3 0 Thymidylate kinase AAA_31 PF13614.1 gi|302347928|ref|YP_003815566.1| - 0.06 13.2 0.0 0.38 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|302347928|ref|YP_003815566.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 E3_binding PF02817.12 gi|302347928|ref|YP_003815566.1| - 0.066 12.8 0.1 6.4 6.4 0.1 3.2 3 0 0 3 3 3 0 e3 binding domain AAA_29 PF13555.1 gi|302347928|ref|YP_003815566.1| - 0.084 12.4 0.0 0.2 11.2 0.0 1.6 2 0 0 2 2 1 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|302347928|ref|YP_003815566.1| - 0.13 11.8 0.0 0.48 9.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|302347928|ref|YP_003815566.1| - 0.13 11.1 0.0 0.27 10.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Alba PF01918.16 gi|302347929|ref|YP_003815567.1| - 2.2e-15 55.9 0.9 2.9e-15 55.5 0.6 1.2 1 0 0 1 1 1 1 Alba Big_2 PF02368.13 gi|302347929|ref|YP_003815567.1| - 0.14 12.0 1.0 0.18 11.7 0.7 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 2) Rpp20 PF12328.3 gi|302347929|ref|YP_003815567.1| - 0.21 11.2 2.9 2 8.0 2.0 2.0 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Cadherin-like PF12733.2 gi|302347929|ref|YP_003815567.1| - 0.42 10.9 2.9 0.53 10.6 2.0 1.1 1 0 0 1 1 1 0 Cadherin-like beta sandwich domain Peptidase_M48 PF01435.13 gi|302347930|ref|YP_003815568.1| - 2.9e-32 112.0 0.0 6.5e-32 110.9 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|302347930|ref|YP_003815568.1| - 0.00032 19.7 0.9 0.00047 19.2 0.1 1.7 2 1 0 2 2 2 1 BlaR1 peptidase M56 Tetraspannin PF00335.15 gi|302347930|ref|YP_003815568.1| - 6.6 5.9 16.3 2.7 7.2 5.0 2.4 2 1 1 3 3 3 0 Tetraspanin family DNA_pol_B PF00136.16 gi|302347931|ref|YP_003815569.1| - 1.6e-81 274.4 0.0 2.3e-81 273.9 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|302347931|ref|YP_003815569.1| - 1.6e-33 116.0 0.0 2.6e-33 115.2 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|302347931|ref|YP_003815569.1| - 6.6e-06 26.0 0.3 0.00012 21.9 0.0 2.8 2 1 0 2 2 2 1 RNase_H superfamily DUF3311 PF11755.3 gi|302347934|ref|YP_003815572.1| - 5.6e-14 51.4 10.2 6.3e-14 51.2 7.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF2269 PF10027.4 gi|302347934|ref|YP_003815572.1| - 0.75 9.5 9.1 1 9.1 6.3 1.3 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF2975 PF11188.3 gi|302347934|ref|YP_003815572.1| - 0.83 9.3 4.9 0.98 9.1 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF2283 PF10049.4 gi|302347935|ref|YP_003815573.1| - 4e-12 45.7 0.7 4.9e-12 45.5 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) zf-ZPR1 PF03367.8 gi|302347936|ref|YP_003815574.1| - 0.0069 15.5 0.1 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Hrs_helical PF12210.3 gi|302347936|ref|YP_003815574.1| - 0.016 15.4 1.0 0.027 14.7 0.7 1.3 1 0 0 1 1 1 0 Hepatocyte growth factor-regulated tyrosine kinase substrate DUF4370 PF14290.1 gi|302347936|ref|YP_003815574.1| - 0.053 12.9 0.0 0.082 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4370) Ovate PF04844.8 gi|302347936|ref|YP_003815574.1| - 0.066 13.0 0.1 0.71 9.7 0.0 2.2 2 0 0 2 2 2 0 Transcriptional repressor, ovate DUF2130 PF09903.4 gi|302347936|ref|YP_003815574.1| - 0.099 11.3 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) TarH PF02203.10 gi|302347936|ref|YP_003815574.1| - 0.11 12.3 0.5 0.16 11.7 0.3 1.2 1 0 0 1 1 1 0 Tar ligand binding domain homologue YABBY PF04690.8 gi|302347936|ref|YP_003815574.1| - 0.16 12.2 0.1 0.21 11.8 0.1 1.1 1 0 0 1 1 1 0 YABBY protein Molydop_binding PF01568.16 gi|302347937|ref|YP_003815575.1| - 8.4e-05 22.3 0.2 0.068 12.9 0.0 2.1 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain tRNA-synt_2b PF00587.20 gi|302347938|ref|YP_003815576.1| - 1.7e-43 148.2 0.1 2.4e-43 147.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|302347938|ref|YP_003815576.1| - 4.3e-21 74.6 0.0 9.7e-21 73.5 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain Rad50_zn_hook PF04423.9 gi|302347938|ref|YP_003815576.1| - 0.011 15.2 0.1 0.024 14.0 0.1 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.5 gi|302347938|ref|YP_003815576.1| - 0.039 13.8 0.3 4.7 7.2 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|302347938|ref|YP_003815576.1| - 0.13 11.8 0.6 13 5.4 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|302347938|ref|YP_003815576.1| - 0.14 11.7 1.4 7 6.3 0.1 2.8 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|302347938|ref|YP_003815576.1| - 0.31 10.7 2.2 13 5.5 0.2 2.8 2 0 0 2 2 2 0 zinc-ribbon domain Arginase PF00491.16 gi|302347939|ref|YP_003815577.1| - 2.8e-71 240.0 0.0 3.1e-71 239.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family Cas_Cas1 PF01867.11 gi|302347939|ref|YP_003815577.1| - 0.049 12.7 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 CRISPR associated protein Cas1 DNA_RNApol_7kD PF03604.8 gi|302347940|ref|YP_003815578.1| - 0.00042 19.7 4.8 0.00085 18.7 3.3 1.5 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|302347940|ref|YP_003815578.1| - 0.0014 17.7 0.3 0.0035 16.5 0.2 1.7 1 1 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|302347940|ref|YP_003815578.1| - 0.0033 16.8 0.8 0.011 15.2 0.5 1.8 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|302347940|ref|YP_003815578.1| - 0.0055 16.3 0.2 0.0074 15.9 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|302347940|ref|YP_003815578.1| - 0.0065 15.9 0.7 0.55 9.8 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|302347940|ref|YP_003815578.1| - 0.0084 15.7 0.3 0.015 14.8 0.2 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|302347940|ref|YP_003815578.1| - 0.0086 15.8 2.3 5.7 6.8 2.6 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|302347940|ref|YP_003815578.1| - 0.015 15.1 0.6 0.073 12.8 0.5 1.9 1 1 1 2 2 2 0 Double zinc ribbon HypA PF01155.14 gi|302347940|ref|YP_003815578.1| - 0.02 14.5 0.1 0.023 14.4 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|302347940|ref|YP_003815578.1| - 0.022 14.3 1.1 2.6 7.7 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) IBR PF01485.16 gi|302347940|ref|YP_003815578.1| - 0.024 14.5 0.3 0.032 14.1 0.2 1.1 1 0 0 1 1 1 0 IBR domain zf-CHY PF05495.7 gi|302347940|ref|YP_003815578.1| - 0.027 14.6 0.1 0.033 14.3 0.1 1.1 1 0 0 1 1 1 0 CHY zinc finger DUF2072 PF09845.4 gi|302347940|ref|YP_003815578.1| - 0.056 13.3 0.3 0.072 13.0 0.2 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DUF2296 PF10058.4 gi|302347940|ref|YP_003815578.1| - 0.062 13.0 3.6 2 8.2 0.1 2.2 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) A2L_zn_ribbon PF08792.5 gi|302347940|ref|YP_003815578.1| - 0.075 12.5 2.8 1.3 8.5 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ISL3 PF14690.1 gi|302347940|ref|YP_003815578.1| - 0.096 12.7 1.4 0.23 11.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|302347940|ref|YP_003815578.1| - 0.11 12.7 1.3 2.3 8.6 0.9 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar Cys_rich_CPCC PF14206.1 gi|302347940|ref|YP_003815578.1| - 0.27 10.8 1.8 4.2 6.9 0.1 2.0 1 1 1 2 2 2 0 Cysteine-rich CPCC PhnA_Zn_Ribbon PF08274.7 gi|302347940|ref|YP_003815578.1| - 0.3 10.9 1.9 0.54 10.0 1.3 1.5 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-CSL PF05207.8 gi|302347940|ref|YP_003815578.1| - 0.32 10.5 4.1 1.1 8.8 2.9 1.8 1 1 0 1 1 1 0 CSL zinc finger Rubredoxin PF00301.15 gi|302347940|ref|YP_003815578.1| - 0.38 10.6 1.8 7.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin zf-Mss51 PF13824.1 gi|302347940|ref|YP_003815578.1| - 0.42 10.5 1.8 14 5.6 1.2 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2082 PF09855.4 gi|302347940|ref|YP_003815578.1| - 0.51 10.2 4.0 1.7 8.5 0.2 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) UPF0547 PF10571.4 gi|302347940|ref|YP_003815578.1| - 0.53 10.0 2.7 2.5 7.8 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2225 PF09986.4 gi|302347940|ref|YP_003815578.1| - 0.63 9.4 5.0 0.74 9.2 0.5 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF1610 PF07754.6 gi|302347940|ref|YP_003815578.1| - 0.66 10.1 0.2 0.66 10.1 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) TF_Zn_Ribbon PF08271.7 gi|302347940|ref|YP_003815578.1| - 0.84 9.0 3.8 6.9 6.0 2.6 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding SUI1 PF01253.17 gi|302347941|ref|YP_003815579.1| - 5.1e-24 83.8 1.2 6e-24 83.6 0.8 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|302347941|ref|YP_003815579.1| - 0.01 16.0 0.5 0.017 15.3 0.3 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) Fzo_mitofusin PF04799.8 gi|302347941|ref|YP_003815579.1| - 0.1 11.9 0.1 0.13 11.6 0.1 1.1 1 0 0 1 1 1 0 fzo-like conserved region DBI_PRT PF02277.12 gi|302347942|ref|YP_003815580.1| - 1.7e-25 89.8 1.5 2.4e-25 89.3 1.0 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase CbiZ PF01955.13 gi|302347943|ref|YP_003815581.1| - 1.1e-36 126.4 0.3 1.6e-36 125.8 0.2 1.3 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase NTP_transf_3 PF12804.2 gi|302347944|ref|YP_003815582.1| - 3e-13 50.1 0.0 3.4e-13 49.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Aminotran_1_2 PF00155.16 gi|302347945|ref|YP_003815583.1| - 4.8e-34 117.8 0.0 5.7e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CobS PF02654.10 gi|302347946|ref|YP_003815584.1| - 1.8e-36 125.9 11.2 2.1e-36 125.6 7.8 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.8 gi|302347947|ref|YP_003815585.1| - 5.5e-71 239.0 10.5 6.4e-71 238.8 7.3 1.0 1 0 0 1 1 1 1 CobD/Cbib protein Asn_synthase PF00733.16 gi|302347948|ref|YP_003815586.1| - 7.3e-21 74.8 0.1 3.5e-19 69.3 0.0 2.2 1 1 1 2 2 2 1 Asparagine synthase DZR PF12773.2 gi|302347948|ref|YP_003815586.1| - 0.047 13.5 0.3 0.09 12.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|302347948|ref|YP_003815586.1| - 0.047 12.9 1.8 0.11 11.7 1.3 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|302347948|ref|YP_003815586.1| - 0.16 11.5 1.8 0.79 9.2 1.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DUF72 PF01904.13 gi|302347949|ref|YP_003815587.1| - 3.4e-52 177.4 0.0 3.8e-52 177.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF2250 PF10007.4 gi|302347950|ref|YP_003815588.1| - 4.4e-48 161.1 3.8 4.4e-29 100.2 0.1 2.0 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|302347950|ref|YP_003815588.1| - 5.2e-05 22.8 0.1 0.017 14.7 0.0 2.5 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|302347950|ref|YP_003815588.1| - 7.3e-05 22.3 0.3 0.016 14.8 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|302347950|ref|YP_003815588.1| - 0.00017 21.1 0.0 0.82 9.4 0.0 2.4 2 0 0 2 2 2 2 MarR family DUF4423 PF14394.1 gi|302347950|ref|YP_003815588.1| - 0.0043 16.6 0.0 0.41 10.1 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) DUF4393 PF14337.1 gi|302347950|ref|YP_003815588.1| - 0.078 12.4 0.0 6.5 6.1 0.0 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4393) PadR PF03551.9 gi|302347950|ref|YP_003815588.1| - 0.15 11.8 0.7 22 4.8 0.1 3.0 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family DMRL_synthase PF00885.14 gi|302347951|ref|YP_003815589.1| - 1.3e-14 54.0 0.0 1.6e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DHBP_synthase PF00926.14 gi|302347952|ref|YP_003815590.1| - 1e-52 178.2 0.0 1.2e-52 178.0 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DUF95 PF01944.12 gi|302347954|ref|YP_003815592.1| - 1.3e-16 60.7 22.5 1.6e-16 60.4 15.6 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF3963 PF13124.1 gi|302347954|ref|YP_003815592.1| - 3.4 7.5 5.8 0.38 10.5 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3963) DUF2393 PF09624.5 gi|302347954|ref|YP_003815592.1| - 3.8 7.0 5.6 0.66 9.4 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) TPPK_C PF12555.3 gi|302347954|ref|YP_003815592.1| - 3.8 7.2 12.2 1.1 9.0 2.0 3.2 3 0 0 3 3 3 0 Thiamine pyrophosphokinase C terminal DUF2192 PF09958.4 gi|302347955|ref|YP_003815593.1| - 4.3e-63 212.6 0.1 4.8e-63 212.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Acyl-CoA_dh_1 PF00441.19 gi|302347956|ref|YP_003815594.1| - 2.2e-47 160.9 2.7 4e-47 160.0 1.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|302347956|ref|YP_003815594.1| - 1.4e-33 115.7 0.7 3.4e-33 114.6 0.5 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|302347956|ref|YP_003815594.1| - 2.1e-18 65.5 0.0 4e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|302347956|ref|YP_003815594.1| - 2.1e-16 60.4 1.3 3.5e-16 59.6 0.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|302347956|ref|YP_003815594.1| - 0.0015 17.9 0.3 0.016 14.5 0.1 2.4 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Acetyltransf_CG PF14542.1 gi|302347956|ref|YP_003815594.1| - 0.045 13.6 1.2 5 7.0 0.1 2.6 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase AA_permease_2 PF13520.1 gi|302347957|ref|YP_003815595.1| - 2.6e-34 118.4 46.5 2.6e-34 118.4 32.3 2.1 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|302347957|ref|YP_003815595.1| - 1.1e-25 90.0 37.2 1.1e-25 90.0 25.8 2.2 2 0 0 2 2 2 2 Amino acid permease EamA PF00892.15 gi|302347958|ref|YP_003815596.1| - 3.7e-20 72.2 34.0 5.6e-10 39.3 12.4 2.4 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|302347958|ref|YP_003815596.1| - 5.3e-05 23.3 5.1 5.3e-05 23.3 3.5 3.0 1 1 2 3 3 3 2 Multidrug resistance efflux transporter DUF2286 PF10051.4 gi|302347959|ref|YP_003815597.1| - 4e-42 143.1 0.2 4.6e-42 143.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) MarC PF01914.12 gi|302347960|ref|YP_003815598.1| - 1.4e-30 105.9 11.0 1.7e-30 105.6 7.6 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.11 gi|302347960|ref|YP_003815598.1| - 0.0036 16.7 0.2 0.0036 16.7 0.1 2.0 2 0 0 2 2 2 1 Integral membrane protein TerC family Usp PF00582.21 gi|302347961|ref|YP_003815599.1| - 6.7e-35 120.3 0.1 7.5e-35 120.1 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family MFS_1 PF07690.11 gi|302347962|ref|YP_003815600.1| - 4.6e-21 74.9 65.8 3.1e-12 45.8 20.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|302347962|ref|YP_003815600.1| - 6.8e-05 21.4 41.5 0.0003 19.3 28.8 2.0 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_1_like PF12832.2 gi|302347962|ref|YP_003815600.1| - 0.0052 16.5 2.0 0.014 15.2 0.2 2.6 2 1 1 3 3 3 1 MFS_1 like family DUF2619 PF10942.3 gi|302347962|ref|YP_003815600.1| - 0.23 11.4 0.2 0.23 11.4 0.1 3.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2619) NTP_transferase PF00483.18 gi|302347963|ref|YP_003815601.1| - 1.4e-23 83.4 0.0 1.7e-23 83.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|302347963|ref|YP_003815601.1| - 1.1e-10 41.7 0.0 1.5e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF126 PF01989.11 gi|302347964|ref|YP_003815602.1| - 5e-26 90.1 0.3 7e-26 89.7 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|302347965|ref|YP_003815603.1| - 3e-109 365.2 0.0 3.3e-109 365.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CoA_binding_2 PF13380.1 gi|302347965|ref|YP_003815603.1| - 0.0092 16.1 0.2 0.11 12.6 0.0 2.4 2 0 0 2 2 2 1 CoA binding domain Aldo_ket_red PF00248.16 gi|302347965|ref|YP_003815603.1| - 0.096 11.4 0.0 0.33 9.7 0.0 1.7 2 0 0 2 2 2 0 Aldo/keto reductase family DUF2419 PF10343.4 gi|302347966|ref|YP_003815604.1| - 0.0012 18.1 0.0 0.0018 17.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2419) DUF1886 PF09171.5 gi|302347966|ref|YP_003815604.1| - 0.026 13.5 0.0 0.051 12.5 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1886) SNARE_assoc PF09335.6 gi|302347969|ref|YP_003815607.1| - 0.00013 22.1 9.4 0.00013 22.1 6.5 2.2 2 1 0 2 2 2 1 SNARE associated Golgi protein EF1_GNE PF00736.14 gi|302347970|ref|YP_003815608.1| - 2.3e-18 65.6 0.1 2.5e-18 65.5 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|302347971|ref|YP_003815609.1| - 2e-18 66.1 20.8 7.8e-11 41.8 3.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|302347971|ref|YP_003815609.1| - 1.2e-05 24.3 14.7 7.4e-05 21.8 1.4 3.0 3 1 0 3 3 3 2 zinc-ribbon domain DUF164 PF02591.10 gi|302347971|ref|YP_003815609.1| - 0.00014 21.6 5.3 2.2 8.1 0.6 3.3 3 0 0 3 3 3 1 Putative zinc ribbon domain DZR PF12773.2 gi|302347971|ref|YP_003815609.1| - 0.00023 20.8 11.8 0.0037 17.0 8.5 2.3 1 1 1 2 2 2 2 Double zinc ribbon PolC_DP2 PF03833.8 gi|302347971|ref|YP_003815609.1| - 0.00031 18.5 3.4 0.00033 18.4 2.4 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DUF35_N PF12172.3 gi|302347971|ref|YP_003815609.1| - 0.0027 17.5 15.6 0.016 15.1 1.4 3.7 1 1 2 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2HC5 PF06221.8 gi|302347971|ref|YP_003815609.1| - 0.0031 17.2 1.7 0.0031 17.2 1.2 2.3 1 1 1 2 2 2 1 Putative zinc finger motif, C2HC5-type zf-B_box PF00643.19 gi|302347971|ref|YP_003815609.1| - 0.0056 16.5 9.6 0.082 12.8 0.6 2.5 1 1 1 2 2 2 2 B-box zinc finger OrfB_Zn_ribbon PF07282.6 gi|302347971|ref|YP_003815609.1| - 0.0064 16.1 10.5 0.017 14.7 0.5 2.4 1 1 1 2 2 2 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|302347971|ref|YP_003815609.1| - 0.0077 15.8 11.2 1.8 8.3 0.1 3.4 2 1 0 2 2 2 1 Nudix N-terminal zf-UBP PF02148.14 gi|302347971|ref|YP_003815609.1| - 0.018 15.1 4.7 0.18 11.9 0.2 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein A2L_zn_ribbon PF08792.5 gi|302347971|ref|YP_003815609.1| - 0.021 14.3 10.2 6.4 6.3 0.1 4.0 4 0 0 4 4 4 0 A2L zinc ribbon domain IBR PF01485.16 gi|302347971|ref|YP_003815609.1| - 0.024 14.4 8.7 0.22 11.4 6.0 2.0 1 1 0 1 1 1 0 IBR domain zf-H2C2_2 PF13465.1 gi|302347971|ref|YP_003815609.1| - 0.024 14.9 0.6 0.024 14.9 0.4 3.7 2 2 2 4 4 4 0 Zinc-finger double domain C1_1 PF00130.17 gi|302347971|ref|YP_003815609.1| - 0.027 14.1 9.4 3.8 7.3 6.5 2.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF1272 PF06906.6 gi|302347971|ref|YP_003815609.1| - 0.029 14.2 10.5 3.3 7.6 7.3 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.1 gi|302347971|ref|YP_003815609.1| - 0.031 13.7 20.0 0.031 13.7 3.1 3.6 2 2 0 3 3 3 0 zinc-ribbon domain Sgf11 PF08209.6 gi|302347971|ref|YP_003815609.1| - 0.031 13.5 13.6 0.55 9.5 0.1 4.0 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) HypA PF01155.14 gi|302347971|ref|YP_003815609.1| - 0.041 13.5 0.4 0.041 13.5 0.2 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family C1_3 PF07649.7 gi|302347971|ref|YP_003815609.1| - 0.052 13.6 10.3 0.054 13.5 0.7 2.8 2 1 0 2 2 2 0 C1-like domain TF_Zn_Ribbon PF08271.7 gi|302347971|ref|YP_003815609.1| - 0.061 12.6 16.7 1.6 8.1 0.5 3.4 2 1 1 3 3 3 0 TFIIB zinc-binding zf-MYND PF01753.13 gi|302347971|ref|YP_003815609.1| - 0.077 12.8 11.8 1.1 9.1 0.8 2.1 2 0 0 2 2 2 0 MYND finger ADK_lid PF05191.9 gi|302347971|ref|YP_003815609.1| - 0.091 12.4 12.7 0.97 9.1 3.6 3.5 2 1 1 3 3 3 0 Adenylate kinase, active site lid DUF2072 PF09845.4 gi|302347971|ref|YP_003815609.1| - 0.093 12.6 1.1 0.093 12.6 0.8 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) Ribosomal_L31 PF01197.13 gi|302347971|ref|YP_003815609.1| - 0.096 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L31 Tnp_zf-ribbon_2 PF13842.1 gi|302347971|ref|YP_003815609.1| - 0.12 12.8 13.0 2.5 8.5 4.5 2.5 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF2296 PF10058.4 gi|302347971|ref|YP_003815609.1| - 0.12 12.1 17.5 1.7 8.4 0.4 3.8 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_5 PF14634.1 gi|302347971|ref|YP_003815609.1| - 0.15 11.8 11.5 0.64 9.7 8.2 1.9 1 1 1 2 2 2 0 zinc-RING finger domain UPF0547 PF10571.4 gi|302347971|ref|YP_003815609.1| - 0.16 11.6 17.1 0.28 10.9 2.4 3.1 2 1 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-C2H2 PF00096.21 gi|302347971|ref|YP_003815609.1| - 0.2 12.0 14.2 4.5 7.8 0.1 4.0 4 0 0 4 4 4 0 Zinc finger, C2H2 type NinF PF05810.7 gi|302347971|ref|YP_003815609.1| - 0.24 11.2 5.5 0.66 9.8 0.2 2.4 1 1 1 2 2 2 0 NinF protein tRNA-synt_1f PF01921.13 gi|302347971|ref|YP_003815609.1| - 0.25 9.9 1.5 0.39 9.3 0.2 1.6 1 1 1 2 2 2 0 tRNA synthetases class I (K) CK_II_beta PF01214.13 gi|302347971|ref|YP_003815609.1| - 0.25 10.8 2.8 0.1 12.1 0.7 1.3 1 1 0 1 1 1 0 Casein kinase II regulatory subunit Ecl1 PF12855.2 gi|302347971|ref|YP_003815609.1| - 0.29 10.4 2.0 1.4 8.2 1.4 2.2 1 1 0 1 1 1 0 Life-span regulatory factor zf-AN1 PF01428.11 gi|302347971|ref|YP_003815609.1| - 0.51 10.2 12.6 2.1 8.2 2.3 2.9 2 1 1 3 3 3 0 AN1-like Zinc finger DUF2321 PF10083.4 gi|302347971|ref|YP_003815609.1| - 0.58 9.6 5.7 1.5 8.3 4.0 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-ISL3 PF14690.1 gi|302347971|ref|YP_003815609.1| - 0.59 10.2 19.4 0.84 9.7 0.4 3.9 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Spt4 PF06093.8 gi|302347971|ref|YP_003815609.1| - 0.67 9.8 8.1 0.59 10.0 2.2 2.1 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger zf-C2H2_jaz PF12171.3 gi|302347971|ref|YP_003815609.1| - 0.77 9.9 3.5 1.6 8.9 0.1 2.7 3 0 0 3 3 3 0 Zinc-finger double-stranded RNA-binding Rpr2 PF04032.11 gi|302347971|ref|YP_003815609.1| - 1.2 9.0 6.3 0.28 11.0 2.0 1.8 2 0 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-CHY PF05495.7 gi|302347971|ref|YP_003815609.1| - 1.5 8.9 8.5 1.5 9.0 0.4 2.2 1 1 1 2 2 2 0 CHY zinc finger zf-UBR PF02207.15 gi|302347971|ref|YP_003815609.1| - 1.6 8.5 8.1 14 5.5 4.6 2.2 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) Prok-RING_1 PF14446.1 gi|302347971|ref|YP_003815609.1| - 2.3 8.0 11.8 2.5 7.8 4.2 2.6 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.7 gi|302347971|ref|YP_003815609.1| - 2.3 8.0 12.8 0.76 9.5 1.6 2.8 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_L32p PF01783.18 gi|302347971|ref|YP_003815609.1| - 2.6 8.2 8.3 73 3.6 3.3 3.1 1 1 1 2 2 2 0 Ribosomal L32p protein family Rubredoxin PF00301.15 gi|302347971|ref|YP_003815609.1| - 3.9 7.4 17.4 8.9 6.2 0.6 4.0 2 2 2 4 4 4 0 Rubredoxin zf-Mss51 PF13824.1 gi|302347971|ref|YP_003815609.1| - 4 7.3 13.3 6 6.8 1.9 2.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_RNApol_7kD PF03604.8 gi|302347971|ref|YP_003815609.1| - 4.3 6.8 15.8 2.4 7.6 3.0 3.6 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37ae PF01780.14 gi|302347971|ref|YP_003815609.1| - 4.8 7.1 9.9 4.9 7.0 2.0 2.8 1 1 2 3 3 3 0 Ribosomal L37ae protein family zinc_ribbon_4 PF13717.1 gi|302347971|ref|YP_003815609.1| - 5.6 6.7 18.6 5.6 6.7 0.2 4.0 2 1 1 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|302347971|ref|YP_003815609.1| - 5.7 6.8 23.6 19 5.1 0.4 3.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|302347971|ref|YP_003815609.1| - 5.8 6.5 18.5 5.4 6.6 0.2 4.0 2 1 1 3 3 3 0 zinc-ribbon domain zf-C3HC4_2 PF13923.1 gi|302347971|ref|YP_003815609.1| - 5.8 7.0 13.0 4.4 7.4 5.5 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PhnA_Zn_Ribbon PF08274.7 gi|302347971|ref|YP_003815609.1| - 6 6.7 8.6 30 4.4 0.1 3.6 4 0 0 4 4 4 0 PhnA Zinc-Ribbon NMD3 PF04981.8 gi|302347971|ref|YP_003815609.1| - 6.2 5.8 7.1 11 5.0 5.0 1.5 1 1 0 1 1 1 0 NMD3 family zf-C3HC4_4 PF15227.1 gi|302347971|ref|YP_003815609.1| - 6.5 6.7 10.7 1.4 8.8 1.1 2.4 1 1 1 2 2 2 0 zinc finger of C3HC4-type, RING NOB1_Zn_bind PF08772.6 gi|302347971|ref|YP_003815609.1| - 6.6 6.6 12.4 4 7.3 4.4 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like RNA_POL_M_15KD PF02150.11 gi|302347971|ref|YP_003815609.1| - 7.4 6.3 9.4 13 5.5 0.5 2.5 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit FbpA PF05833.6 gi|302347972|ref|YP_003815610.1| - 5.2e-40 137.3 0.0 9e-40 136.5 0.0 1.3 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|302347972|ref|YP_003815610.1| - 2.1e-22 78.8 0.0 4.3e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF814) TruB_C PF09142.6 gi|302347972|ref|YP_003815610.1| - 0.0021 17.6 0.5 0.0087 15.6 0.0 2.3 2 0 0 2 2 2 1 tRNA Pseudouridine synthase II, C terminal TBPIP PF07106.8 gi|302347972|ref|YP_003815610.1| - 0.005 16.3 1.5 0.017 14.6 0.2 2.1 2 0 0 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4337 PF14235.1 gi|302347972|ref|YP_003815610.1| - 0.0094 15.7 6.9 0.17 11.6 0.3 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4337) NSP2-B_epitope PF14757.1 gi|302347972|ref|YP_003815610.1| - 0.1 12.0 0.1 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 Immunogenic region of nsp2 protein of arterivirus polyprotein APG6 PF04111.7 gi|302347972|ref|YP_003815610.1| - 3.8 6.4 7.5 5.8 5.8 0.1 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 Plasmid_stabil PF05016.9 gi|302347972|ref|YP_003815610.1| - 9 6.7 8.7 5 7.5 0.8 3.7 4 0 0 4 4 4 0 Plasmid stabilisation system protein Metallophos_2 PF12850.2 gi|302347974|ref|YP_003815612.1| - 3.5e-06 26.9 0.0 5.3e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|302347974|ref|YP_003815612.1| - 0.003 16.9 0.0 0.01 15.2 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase THUMP PF02926.12 gi|302347975|ref|YP_003815613.1| - 8.2e-12 45.2 0.0 1.5e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 THUMP domain CitMHS PF03600.11 gi|302347976|ref|YP_003815614.1| - 2.9e-23 82.0 30.4 2.9e-23 82.0 21.0 2.1 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|302347976|ref|YP_003815614.1| - 9e-07 28.1 12.0 9e-07 28.1 8.3 2.2 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region ECH PF00378.15 gi|302347977|ref|YP_003815615.1| - 1.1e-48 165.5 0.0 1.3e-48 165.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family DUF2236 PF09995.4 gi|302347977|ref|YP_003815615.1| - 0.052 12.8 0.3 0.074 12.3 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2236) KOW PF00467.24 gi|302347978|ref|YP_003815616.1| - 0.00026 20.5 0.7 0.00026 20.5 0.5 1.9 2 0 0 2 2 2 1 KOW motif Ribosomal_L14e PF01929.12 gi|302347978|ref|YP_003815616.1| - 0.0096 16.2 0.0 0.014 15.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 MoaE PF02391.12 gi|302347979|ref|YP_003815617.1| - 4.9e-23 81.1 0.0 7.8e-23 80.5 0.0 1.3 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.15 gi|302347979|ref|YP_003815617.1| - 6.4e-09 36.1 0.3 2.3e-08 34.3 0.0 2.1 3 0 0 3 3 3 1 ThiS family Ribosomal_L24e PF01246.15 gi|302347980|ref|YP_003815618.1| - 0.014 15.2 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L24e DUF581 PF04570.9 gi|302347980|ref|YP_003815618.1| - 0.086 12.1 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF581) Rad50_zn_hook PF04423.9 gi|302347980|ref|YP_003815618.1| - 0.14 11.6 0.4 0.67 9.4 0.0 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif DEAD PF00270.24 gi|302347981|ref|YP_003815619.1| - 2.8e-30 105.0 0.0 6.2e-30 103.9 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|302347981|ref|YP_003815619.1| - 4.9e-12 45.5 0.0 1.7e-11 43.8 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.6 gi|302347981|ref|YP_003815619.1| - 5.8e-10 39.1 0.0 1.3e-08 34.8 0.0 2.3 1 1 0 1 1 1 1 DEAD/H associated ResIII PF04851.10 gi|302347981|ref|YP_003815619.1| - 2.4e-05 24.2 0.0 6.2e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|302347981|ref|YP_003815619.1| - 0.0007 19.3 0.1 0.003 17.2 0.0 2.2 1 0 0 1 1 1 1 Part of AAA domain GerE PF00196.14 gi|302347981|ref|YP_003815619.1| - 0.004 16.4 0.0 0.0083 15.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|302347981|ref|YP_003815619.1| - 0.0059 15.9 0.0 1.8 8.0 0.0 3.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding SNF2_N PF00176.18 gi|302347981|ref|YP_003815619.1| - 0.0087 14.8 0.0 0.016 14.0 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain HTH_11 PF08279.7 gi|302347981|ref|YP_003815619.1| - 0.021 14.4 0.1 0.083 12.5 0.1 2.0 1 0 0 1 1 1 0 HTH domain UvrD-helicase PF00580.16 gi|302347981|ref|YP_003815619.1| - 0.024 13.9 0.0 0.04 13.2 0.0 1.4 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain PseudoU_synth_2 PF00849.17 gi|302347981|ref|YP_003815619.1| - 0.082 12.7 0.1 4.8 6.9 0.0 2.3 1 1 1 2 2 2 0 RNA pseudouridylate synthase HTH_Mga PF08280.6 gi|302347981|ref|YP_003815619.1| - 0.17 11.6 0.0 0.45 10.3 0.0 1.7 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF939 PF06081.6 gi|302347982|ref|YP_003815620.1| - 0.0052 16.6 5.2 0.0084 15.9 3.6 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF939) DUF1700 PF08006.6 gi|302347982|ref|YP_003815620.1| - 2.1 7.6 8.9 3.2 7.0 6.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) RHH_1 PF01402.16 gi|302347983|ref|YP_003815621.1| - 1.5e-08 34.1 0.4 2.2e-08 33.6 0.3 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|302347983|ref|YP_003815621.1| - 0.006 16.7 0.0 0.007 16.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) GHMP_kinases_N PF00288.21 gi|302347984|ref|YP_003815622.1| - 0.021 14.8 0.0 0.042 13.9 0.0 1.6 1 0 0 1 1 1 0 GHMP kinases N terminal domain FKBP_C PF00254.23 gi|302347985|ref|YP_003815623.1| - 4.1e-14 52.3 0.0 9.3e-14 51.2 0.0 1.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase BRX_N PF13713.1 gi|302347985|ref|YP_003815623.1| - 0.036 13.5 0.1 0.092 12.2 0.1 1.7 1 0 0 1 1 1 0 Transcription factor BRX N-terminal domain UPF0113 PF03657.8 gi|302347986|ref|YP_003815624.1| - 2.3e-20 72.8 0.0 2.7e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) Nol1_Nop2_Fmu_2 PF13636.1 gi|302347986|ref|YP_003815624.1| - 2.2e-05 24.4 0.0 3.3e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis RHH_1 PF01402.16 gi|302347986|ref|YP_003815624.1| - 0.064 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Nol1_Nop2_Fmu PF01189.12 gi|302347987|ref|YP_003815625.1| - 3.1e-51 174.4 0.0 3.5e-51 174.2 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_18 PF12847.2 gi|302347987|ref|YP_003815625.1| - 0.0003 21.3 0.0 0.00061 20.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|302347987|ref|YP_003815625.1| - 0.00058 19.8 0.0 0.00097 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302347987|ref|YP_003815625.1| - 0.0038 16.8 0.0 0.0068 16.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|302347987|ref|YP_003815625.1| - 0.036 14.0 0.0 0.096 12.6 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase MTS PF05175.9 gi|302347987|ref|YP_003815625.1| - 0.069 12.5 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain CTP_transf_2 PF01467.21 gi|302347988|ref|YP_003815626.1| - 4.4e-15 56.0 0.0 5.5e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase Adenosine_kin PF04008.9 gi|302347989|ref|YP_003815627.1| - 6e-73 243.4 0.1 6.8e-73 243.2 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Toxin_25 PF08095.6 gi|302347989|ref|YP_003815627.1| - 0.31 10.8 0.2 0.31 10.8 0.1 1.9 2 0 0 2 2 2 0 Hefutoxin family AAA_18 PF13238.1 gi|302347990|ref|YP_003815628.1| - 2.2e-14 53.8 0.0 3e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|302347990|ref|YP_003815628.1| - 1.6e-12 48.2 0.1 2e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|302347990|ref|YP_003815628.1| - 1.4e-05 24.9 0.0 2.4e-05 24.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|302347990|ref|YP_003815628.1| - 0.00012 21.6 0.1 0.00088 18.7 0.1 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.5 gi|302347990|ref|YP_003815628.1| - 0.00021 20.6 0.0 0.00031 20.0 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|302347990|ref|YP_003815628.1| - 0.00044 20.0 0.1 0.0006 19.5 0.1 1.3 1 0 0 1 1 1 1 NTPase ADK PF00406.17 gi|302347990|ref|YP_003815628.1| - 0.0013 18.6 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase APS_kinase PF01583.15 gi|302347990|ref|YP_003815628.1| - 0.0023 17.5 0.0 0.0055 16.3 0.0 1.7 2 1 0 2 2 2 1 Adenylylsulphate kinase AAA_22 PF13401.1 gi|302347990|ref|YP_003815628.1| - 0.0048 17.0 0.0 0.0066 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|302347990|ref|YP_003815628.1| - 0.005 16.6 0.0 0.0086 15.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 CoaE PF01121.15 gi|302347990|ref|YP_003815628.1| - 0.0072 15.7 0.1 0.059 12.7 0.0 2.1 2 0 0 2 2 2 1 Dephospho-CoA kinase ArgK PF03308.11 gi|302347990|ref|YP_003815628.1| - 0.01 14.6 0.2 0.082 11.6 0.0 2.1 2 0 0 2 2 2 1 ArgK protein AAA_16 PF13191.1 gi|302347990|ref|YP_003815628.1| - 0.022 14.7 0.0 0.032 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|302347990|ref|YP_003815628.1| - 0.029 14.5 0.1 0.056 13.6 0.0 1.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|302347990|ref|YP_003815628.1| - 0.035 13.5 0.3 0.073 12.4 0.2 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain T2SE PF00437.15 gi|302347990|ref|YP_003815628.1| - 0.055 12.3 0.1 0.094 11.5 0.0 1.6 1 1 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|302347990|ref|YP_003815628.1| - 0.087 13.1 0.0 0.091 13.0 0.0 1.3 1 1 0 1 1 1 0 ABC transporter TrkA_N PF02254.13 gi|302347990|ref|YP_003815628.1| - 0.11 12.4 0.1 0.39 10.7 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain SKI PF01202.17 gi|302347990|ref|YP_003815628.1| - 0.12 12.2 0.1 0.19 11.5 0.0 1.7 1 1 0 1 1 1 0 Shikimate kinase AAA_19 PF13245.1 gi|302347990|ref|YP_003815628.1| - 0.13 12.0 0.2 0.57 9.9 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain RNA_helicase PF00910.17 gi|302347990|ref|YP_003815628.1| - 0.17 12.1 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase RNA_binding PF01877.12 gi|302347991|ref|YP_003815629.1| - 1.9e-24 85.9 0.0 2.2e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 RNA binding CPL PF08144.6 gi|302347991|ref|YP_003815629.1| - 0.14 11.9 0.1 0.3 10.9 0.0 1.5 1 1 1 2 2 2 0 CPL (NUC119) domain Lactamase_B_2 PF12706.2 gi|302347992|ref|YP_003815630.1| - 3.1e-23 82.3 0.0 3.8e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|302347992|ref|YP_003815630.1| - 3.9e-13 49.4 0.0 3.7e-12 46.2 0.0 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|302347992|ref|YP_003815630.1| - 0.013 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain UPF0020 PF01170.13 gi|302347993|ref|YP_003815631.1| - 2.6e-26 92.3 0.0 4.6e-26 91.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|302347993|ref|YP_003815631.1| - 8.9e-15 54.7 0.0 2.2e-14 53.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|302347993|ref|YP_003815631.1| - 7.4e-09 35.9 0.0 2e-08 34.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|302347993|ref|YP_003815631.1| - 8.8e-09 35.0 0.0 1.4e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|302347993|ref|YP_003815631.1| - 5.4e-07 29.1 0.0 8.2e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|302347993|ref|YP_003815631.1| - 8.5e-06 25.4 0.0 1.4e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|302347993|ref|YP_003815631.1| - 0.00015 20.9 0.0 0.00029 20.0 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_N4_Mtase PF01555.13 gi|302347993|ref|YP_003815631.1| - 0.00062 19.3 0.0 0.13 11.6 0.0 2.3 2 0 0 2 2 2 2 DNA methylase PrmA PF06325.8 gi|302347993|ref|YP_003815631.1| - 0.0044 16.1 0.0 0.0074 15.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|302347993|ref|YP_003815631.1| - 0.0063 16.8 0.0 0.025 14.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|302347993|ref|YP_003815631.1| - 0.018 15.5 0.0 0.056 14.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Claudin_2 PF13903.1 gi|302347994|ref|YP_003815632.1| - 0.73 9.5 8.5 0.86 9.2 5.9 1.3 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Wzy_C PF04932.10 gi|302347994|ref|YP_003815632.1| - 3.3 7.4 9.0 4 7.1 6.3 1.3 1 0 0 1 1 1 0 O-Antigen ligase YtpI PF14007.1 gi|302347994|ref|YP_003815632.1| - 3.5 7.6 13.2 0.075 12.9 2.8 2.3 1 1 1 2 2 2 0 YtpI-like protein DUF2892 PF11127.3 gi|302347994|ref|YP_003815632.1| - 7.9 6.3 10.8 3.9 7.3 5.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) Glycos_transf_2 PF00535.21 gi|302347995|ref|YP_003815633.1| - 8.6e-35 119.9 0.0 1.4e-34 119.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|302347995|ref|YP_003815633.1| - 1.5e-21 76.4 5.2 2.4e-21 75.8 3.6 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.1 gi|302347995|ref|YP_003815633.1| - 1.8e-15 57.3 0.0 2.9e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|302347995|ref|YP_003815633.1| - 1.1e-06 27.9 0.0 1.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|302347995|ref|YP_003815633.1| - 0.00021 21.3 0.0 0.00035 20.6 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|302347995|ref|YP_003815633.1| - 0.0042 16.4 0.0 0.0067 15.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Glyco_transf_21 PF13506.1 gi|302347995|ref|YP_003815633.1| - 0.005 16.1 0.0 0.011 14.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 21 Peripla_BP_6 PF13458.1 gi|302347995|ref|YP_003815633.1| - 0.041 13.2 0.0 0.15 11.3 0.0 1.8 2 0 0 2 2 2 0 Periplasmic binding protein Metallophos_2 PF12850.2 gi|302347996|ref|YP_003815634.1| - 9.9e-06 25.4 0.7 1.7e-05 24.6 0.5 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|302347996|ref|YP_003815634.1| - 5.9e-05 22.5 0.0 0.00017 21.0 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Aminotran_3 PF00202.16 gi|302347996|ref|YP_003815634.1| - 0.063 12.1 0.0 0.097 11.5 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III TBP PF00352.16 gi|302347997|ref|YP_003815635.1| - 1.2e-64 213.6 1.0 1.3e-33 114.1 0.1 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|302347997|ref|YP_003815635.1| - 1e-05 25.4 0.0 0.19 11.7 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DNA_primase_S PF01896.14 gi|302347999|ref|YP_003815637.1| - 1.6e-11 44.2 0.0 2.6e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit PCNA_N PF00705.13 gi|302348000|ref|YP_003815638.1| - 2.8e-16 59.1 0.1 7.8e-14 51.2 0.0 2.1 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|302348000|ref|YP_003815638.1| - 4.5e-13 49.2 0.1 7e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|302348000|ref|YP_003815638.1| - 5.5e-06 25.3 0.0 0.0039 16.0 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|302348000|ref|YP_003815638.1| - 0.0066 15.6 0.0 0.023 13.8 0.0 1.8 1 1 1 2 2 2 1 Rad9 Ribosomal_L44 PF00935.14 gi|302348001|ref|YP_003815639.1| - 3.3e-28 97.4 7.4 3.3e-28 97.4 5.1 1.5 1 1 1 2 2 2 1 Ribosomal protein L44 zf-ISL3 PF14690.1 gi|302348001|ref|YP_003815639.1| - 0.0055 16.7 1.9 1.7 8.7 0.4 2.4 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Mu-like_Com PF10122.4 gi|302348001|ref|YP_003815639.1| - 0.012 14.6 3.6 1.1 8.3 0.2 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com zinc_ribbon_2 PF13240.1 gi|302348001|ref|YP_003815639.1| - 0.015 14.7 1.9 3.2 7.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.8 gi|302348001|ref|YP_003815639.1| - 0.027 14.1 1.2 1 9.0 0.2 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.1 gi|302348001|ref|YP_003815639.1| - 0.036 13.6 2.0 3.1 7.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|302348001|ref|YP_003815639.1| - 0.042 13.6 0.3 5.9 6.7 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|302348001|ref|YP_003815639.1| - 0.049 13.5 0.5 3.3 7.6 0.1 2.3 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|302348001|ref|YP_003815639.1| - 0.066 12.4 1.5 7.1 5.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Yippee-Mis18 PF03226.9 gi|302348001|ref|YP_003815639.1| - 0.068 13.2 0.3 0.089 12.8 0.2 1.1 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Joubert PF15392.1 gi|302348001|ref|YP_003815639.1| - 0.092 11.9 0.2 0.091 11.9 0.1 1.0 1 0 0 1 1 1 0 Joubert syndrome-associated TF_Zn_Ribbon PF08271.7 gi|302348001|ref|YP_003815639.1| - 0.11 11.8 0.4 6.9 6.0 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Sortase PF04203.8 gi|302348001|ref|YP_003815639.1| - 0.11 12.0 0.2 0.14 11.7 0.2 1.2 1 0 0 1 1 1 0 Sortase family Ribosomal_L33 PF00471.15 gi|302348001|ref|YP_003815639.1| - 0.12 12.6 0.9 0.12 12.6 0.6 2.8 2 1 1 3 3 3 0 Ribosomal protein L33 Lar_restr_allev PF14354.1 gi|302348001|ref|YP_003815639.1| - 0.15 12.3 1.0 1.6 9.1 0.7 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF1660 PF07874.6 gi|302348001|ref|YP_003815639.1| - 0.16 12.2 0.9 1.4 9.2 0.1 2.1 2 0 0 2 2 2 0 Prophage protein (DUF1660) zf-FPG_IleRS PF06827.9 gi|302348001|ref|YP_003815639.1| - 0.18 11.4 0.3 0.18 11.4 0.2 1.8 2 0 0 2 2 1 0 Zinc finger found in FPG and IleRS zinc_ribbon_4 PF13717.1 gi|302348001|ref|YP_003815639.1| - 0.18 11.5 3.7 3.7 7.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|302348001|ref|YP_003815639.1| - 0.36 10.5 2.9 6.1 6.5 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) IBR PF01485.16 gi|302348001|ref|YP_003815639.1| - 0.7 9.8 3.8 1.7 8.5 2.6 1.7 1 1 0 1 1 1 0 IBR domain DZR PF12773.2 gi|302348001|ref|YP_003815639.1| - 0.73 9.6 3.9 3.6 7.4 2.7 1.9 1 1 0 1 1 1 0 Double zinc ribbon Rpr2 PF04032.11 gi|302348001|ref|YP_003815639.1| - 2.8 7.8 5.7 5.8 6.8 3.9 1.6 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Nop10p PF04135.7 gi|302348002|ref|YP_003815640.1| - 3.8e-25 87.3 2.2 4e-25 87.2 1.6 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-CCHC_4 PF14392.1 gi|302348002|ref|YP_003815640.1| - 0.0028 17.2 0.1 0.0049 16.5 0.1 1.3 1 0 0 1 1 1 1 Zinc knuckle RecR PF02132.10 gi|302348002|ref|YP_003815640.1| - 0.0086 15.4 0.2 0.011 15.1 0.1 1.2 1 0 0 1 1 1 1 RecR protein DUF35_N PF12172.3 gi|302348002|ref|YP_003815640.1| - 0.015 15.2 6.3 0.015 15.2 4.4 1.9 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_ribbon_recom PF13408.1 gi|302348002|ref|YP_003815640.1| - 0.016 15.4 2.8 0.083 13.1 0.1 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-FCS PF06467.9 gi|302348002|ref|YP_003815640.1| - 0.047 13.3 1.4 1.6 8.4 0.0 2.2 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DZR PF12773.2 gi|302348002|ref|YP_003815640.1| - 0.057 13.2 0.3 0.083 12.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|302348002|ref|YP_003815640.1| - 0.084 12.1 4.0 0.6 9.3 2.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF1272 PF06906.6 gi|302348002|ref|YP_003815640.1| - 0.092 12.6 1.4 0.12 12.2 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-IS66 PF13005.2 gi|302348002|ref|YP_003815640.1| - 0.1 12.5 3.4 0.21 11.6 0.2 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 UPF0547 PF10571.4 gi|302348002|ref|YP_003815640.1| - 0.19 11.4 1.3 2.8 7.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|302348002|ref|YP_003815640.1| - 0.23 11.0 3.4 1.5 8.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|302348002|ref|YP_003815640.1| - 0.25 11.5 1.3 0.38 10.9 0.8 1.4 1 1 0 1 1 1 0 Ribosomal L32p protein family Cys_rich_CPXG PF14255.1 gi|302348002|ref|YP_003815640.1| - 0.45 10.3 2.0 1.8 8.4 0.2 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-ISL3 PF14690.1 gi|302348002|ref|YP_003815640.1| - 0.59 10.2 5.8 1.6 8.8 0.6 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|302348002|ref|YP_003815640.1| - 1.7 8.2 6.6 5.8 6.5 0.3 2.3 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_S14 PF00253.16 gi|302348002|ref|YP_003815640.1| - 3.8 6.9 5.9 5.2 6.5 1.2 2.7 2 1 1 3 3 3 0 Ribosomal protein S14p/S29e zf-C2H2 PF00096.21 gi|302348002|ref|YP_003815640.1| - 7.8 7.0 6.0 35 5.0 1.1 2.6 2 1 0 2 2 2 0 Zinc finger, C2H2 type zf-C2HC_2 PF13913.1 gi|302348002|ref|YP_003815640.1| - 8 6.2 7.9 17 5.2 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type EIF_2_alpha PF07541.7 gi|302348003|ref|YP_003815641.1| - 3.5e-27 94.3 0.3 6e-27 93.6 0.2 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|302348003|ref|YP_003815641.1| - 2.8e-15 56.1 2.0 7.1e-15 54.8 0.5 2.1 2 0 0 2 2 2 1 S1 RNA binding domain T2SF PF00482.18 gi|302348003|ref|YP_003815641.1| - 0.071 13.0 0.1 0.69 9.8 0.0 2.4 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F LmjF365940-deam PF14421.1 gi|302348003|ref|YP_003815641.1| - 0.11 11.8 2.2 10 5.4 0.0 2.2 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases HTH_23 PF13384.1 gi|302348004|ref|YP_003815642.1| - 5e-05 22.7 0.1 0.00011 21.7 0.0 1.6 1 1 1 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|302348004|ref|YP_003815642.1| - 0.00028 20.8 0.1 0.00037 20.4 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|302348004|ref|YP_003815642.1| - 0.021 14.9 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_17 PF12728.2 gi|302348004|ref|YP_003815642.1| - 0.045 13.9 0.1 0.096 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1870 PF08965.5 gi|302348005|ref|YP_003815643.1| - 0.11 12.1 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1870) AAA_18 PF13238.1 gi|302348006|ref|YP_003815644.1| - 5.6e-15 55.7 0.0 7.3e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|302348006|ref|YP_003815644.1| - 1.1e-08 35.9 0.1 1.7e-08 35.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|302348006|ref|YP_003815644.1| - 4.9e-06 26.0 0.2 4.8e-05 22.8 0.2 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.12 gi|302348006|ref|YP_003815644.1| - 1.5e-05 24.4 0.1 0.0004 19.8 0.1 2.4 1 1 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|302348006|ref|YP_003815644.1| - 2e-05 24.6 0.0 2.8e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|302348006|ref|YP_003815644.1| - 2.4e-05 23.2 0.1 5.5e-05 22.0 0.1 1.6 1 0 0 1 1 1 1 ArgK protein AAA_16 PF13191.1 gi|302348006|ref|YP_003815644.1| - 4.7e-05 23.4 0.1 6.9e-05 22.9 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.5 gi|302348006|ref|YP_003815644.1| - 0.00012 21.3 0.0 0.0002 20.6 0.0 1.5 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|302348006|ref|YP_003815644.1| - 0.00025 20.6 0.6 0.0011 18.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|302348006|ref|YP_003815644.1| - 0.0003 20.5 0.1 0.00063 19.5 0.1 1.5 1 0 0 1 1 1 1 NTPase ATP_bind_1 PF03029.12 gi|302348006|ref|YP_003815644.1| - 0.00032 20.3 0.0 0.0021 17.6 0.0 1.9 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein AAA_14 PF13173.1 gi|302348006|ref|YP_003815644.1| - 0.00055 19.8 0.7 0.0023 17.8 0.5 1.9 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|302348006|ref|YP_003815644.1| - 0.00058 19.3 0.0 0.00098 18.6 0.0 1.5 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|302348006|ref|YP_003815644.1| - 0.00072 19.2 0.8 0.0017 18.0 0.1 1.9 2 1 0 2 2 2 1 Part of AAA domain MobB PF03205.9 gi|302348006|ref|YP_003815644.1| - 0.00085 19.0 0.1 0.0018 17.9 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|302348006|ref|YP_003815644.1| - 0.00089 18.7 0.2 0.0016 17.9 0.1 1.7 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|302348006|ref|YP_003815644.1| - 0.0033 17.5 0.0 0.0066 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|302348006|ref|YP_003815644.1| - 0.0037 17.1 0.5 0.034 14.0 0.3 2.1 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|302348006|ref|YP_003815644.1| - 0.0045 16.0 0.0 0.0055 15.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) CPT PF07931.7 gi|302348006|ref|YP_003815644.1| - 0.0076 15.8 0.0 0.016 14.8 0.0 1.4 1 1 1 2 2 2 1 Chloramphenicol phosphotransferase-like protein APS_kinase PF01583.15 gi|302348006|ref|YP_003815644.1| - 0.0084 15.7 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Viral_helicase1 PF01443.13 gi|302348006|ref|YP_003815644.1| - 0.014 14.9 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|302348006|ref|YP_003815644.1| - 0.014 15.0 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA PF00004.24 gi|302348006|ref|YP_003815644.1| - 0.014 15.5 0.0 0.034 14.3 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|302348006|ref|YP_003815644.1| - 0.022 13.8 0.0 0.048 12.7 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin ABC_tran PF00005.22 gi|302348006|ref|YP_003815644.1| - 0.074 13.3 0.2 0.13 12.5 0.1 1.8 1 1 0 1 1 1 0 ABC transporter Herpes_Helicase PF02689.9 gi|302348006|ref|YP_003815644.1| - 0.079 10.6 0.0 0.11 10.1 0.0 1.1 1 0 0 1 1 1 0 Helicase Arch_ATPase PF01637.13 gi|302348006|ref|YP_003815644.1| - 0.083 12.5 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase T2SE PF00437.15 gi|302348006|ref|YP_003815644.1| - 0.084 11.7 0.1 0.67 8.8 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein 6PF2K PF01591.13 gi|302348006|ref|YP_003815644.1| - 0.094 11.7 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 6-phosphofructo-2-kinase DnaB_C PF03796.10 gi|302348006|ref|YP_003815644.1| - 0.097 11.5 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DUF258 PF03193.11 gi|302348006|ref|YP_003815644.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|302348006|ref|YP_003815644.1| - 0.15 12.0 0.1 0.22 11.4 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase SecY PF00344.15 gi|302348007|ref|YP_003815645.1| - 1.3e-74 251.2 19.1 1.7e-74 250.8 13.3 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|302348007|ref|YP_003815645.1| - 1.7e-09 37.0 0.3 4.5e-09 35.6 0.2 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Thioredoxin_3 PF13192.1 gi|302348009|ref|YP_003815647.1| - 6.6e-25 86.7 0.6 4e-15 55.3 0.1 2.6 2 1 0 2 2 2 2 Thioredoxin domain Thioredoxin_4 PF13462.1 gi|302348009|ref|YP_003815647.1| - 0.0012 18.9 4.6 3.2 7.7 0.0 3.9 2 2 2 4 4 4 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|302348009|ref|YP_003815647.1| - 0.0037 17.4 1.0 2.3 8.4 0.5 3.1 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|302348009|ref|YP_003815647.1| - 0.0052 16.4 0.2 0.036 13.7 0.0 2.1 2 1 0 2 2 2 1 Thioredoxin Glutaredoxin PF00462.19 gi|302348009|ref|YP_003815647.1| - 0.15 12.0 8.7 1.2 9.2 0.4 4.3 2 2 1 3 3 3 0 Glutaredoxin HTH_3 PF01381.17 gi|302348010|ref|YP_003815648.1| - 0.00039 20.2 0.0 0.00084 19.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|302348010|ref|YP_003815648.1| - 0.0058 16.2 0.1 0.24 11.1 0.0 2.7 3 0 0 3 3 3 1 Homeodomain-like domain HTH_37 PF13744.1 gi|302348010|ref|YP_003815648.1| - 0.0082 15.9 0.1 0.038 13.8 0.0 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|302348010|ref|YP_003815648.1| - 0.022 14.2 0.7 0.048 13.1 0.0 1.9 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_17 PF12728.2 gi|302348010|ref|YP_003815648.1| - 0.025 14.8 0.0 0.88 9.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1643 PF07799.7 gi|302348010|ref|YP_003815648.1| - 0.062 12.9 0.0 0.072 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1643) HTH_19 PF12844.2 gi|302348010|ref|YP_003815648.1| - 0.074 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|302348010|ref|YP_003815648.1| - 0.11 12.6 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|302348010|ref|YP_003815648.1| - 0.11 12.2 0.0 0.34 10.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family ArdA PF07275.6 gi|302348010|ref|YP_003815648.1| - 0.13 12.4 0.2 0.16 12.2 0.2 1.3 1 1 0 1 1 1 0 Antirestriction protein (ArdA) HTH_3 PF01381.17 gi|302348011|ref|YP_003815649.1| - 2.4e-10 40.0 0.6 1e-09 38.1 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|302348011|ref|YP_003815649.1| - 4.8e-10 39.3 0.1 1.7e-09 37.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|302348011|ref|YP_003815649.1| - 1.4e-08 34.8 0.0 3.5e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain NTPase_1 PF03266.10 gi|302348012|ref|YP_003815650.1| - 6.7e-40 136.5 0.0 8e-40 136.2 0.0 1.0 1 0 0 1 1 1 1 NTPase IstB_IS21 PF01695.12 gi|302348012|ref|YP_003815650.1| - 4.5e-06 26.1 0.1 0.0014 18.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|302348012|ref|YP_003815650.1| - 1.1e-05 25.5 0.2 8.8e-05 22.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|302348012|ref|YP_003815650.1| - 1.3e-05 25.4 0.0 2.7e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|302348012|ref|YP_003815650.1| - 1.5e-05 25.7 0.5 4e-05 24.4 0.2 2.0 1 1 1 2 2 2 1 AAA domain NACHT PF05729.7 gi|302348012|ref|YP_003815650.1| - 2.5e-05 23.9 0.7 0.00018 21.2 0.2 2.1 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.1 gi|302348012|ref|YP_003815650.1| - 0.0002 21.6 2.0 0.00066 19.9 1.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|302348012|ref|YP_003815650.1| - 0.0002 21.0 0.0 0.0005 19.7 0.0 1.7 1 1 0 1 1 1 1 Part of AAA domain RuvB_N PF05496.7 gi|302348012|ref|YP_003815650.1| - 0.00039 19.5 0.4 0.0032 16.5 0.1 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_24 PF13479.1 gi|302348012|ref|YP_003815650.1| - 0.00059 19.4 0.1 0.026 14.0 0.1 2.4 2 1 1 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|302348012|ref|YP_003815650.1| - 0.00097 18.5 0.1 0.0019 17.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|302348012|ref|YP_003815650.1| - 0.0013 18.5 0.2 0.018 14.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|302348012|ref|YP_003815650.1| - 0.0016 18.1 0.1 0.34 10.6 0.1 2.5 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|302348012|ref|YP_003815650.1| - 0.0017 17.2 0.2 0.0024 16.7 0.1 1.2 1 0 0 1 1 1 1 NB-ARC domain DnaB_C PF03796.10 gi|302348012|ref|YP_003815650.1| - 0.0019 17.1 0.1 0.003 16.4 0.1 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain APS_kinase PF01583.15 gi|302348012|ref|YP_003815650.1| - 0.0025 17.4 0.1 0.072 12.7 0.0 2.1 2 0 0 2 2 2 1 Adenylylsulphate kinase ABC_tran PF00005.22 gi|302348012|ref|YP_003815650.1| - 0.0057 16.9 1.1 0.014 15.7 0.1 1.9 2 0 0 2 2 2 1 ABC transporter ArgK PF03308.11 gi|302348012|ref|YP_003815650.1| - 0.0068 15.2 1.2 0.024 13.4 0.2 1.9 2 0 0 2 2 2 1 ArgK protein RNA_helicase PF00910.17 gi|302348012|ref|YP_003815650.1| - 0.0084 16.2 0.0 0.025 14.7 0.0 1.8 2 0 0 2 2 1 1 RNA helicase AAA_16 PF13191.1 gi|302348012|ref|YP_003815650.1| - 0.01 15.8 1.3 0.02 14.8 0.2 1.9 2 1 0 2 2 2 1 AAA ATPase domain Parvo_NS1 PF01057.12 gi|302348012|ref|YP_003815650.1| - 0.011 14.6 0.0 0.027 13.3 0.0 1.5 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 MobB PF03205.9 gi|302348012|ref|YP_003815650.1| - 0.014 15.0 0.2 0.026 14.2 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|302348012|ref|YP_003815650.1| - 0.015 14.9 0.0 0.045 13.4 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase KTI12 PF08433.5 gi|302348012|ref|YP_003815650.1| - 0.017 14.3 0.3 0.03 13.5 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Elong_Iki1 PF10483.4 gi|302348012|ref|YP_003815650.1| - 0.017 14.4 0.0 0.023 14.0 0.0 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 AAA_28 PF13521.1 gi|302348012|ref|YP_003815650.1| - 0.017 15.0 0.5 0.03 14.2 0.4 1.4 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|302348012|ref|YP_003815650.1| - 0.028 13.5 0.3 0.064 12.3 0.1 1.7 2 0 0 2 2 2 0 KaiC AAA_10 PF12846.2 gi|302348012|ref|YP_003815650.1| - 0.03 13.7 0.0 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain DUF258 PF03193.11 gi|302348012|ref|YP_003815650.1| - 0.038 13.1 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF2075 PF09848.4 gi|302348012|ref|YP_003815650.1| - 0.059 12.3 0.1 0.072 12.0 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_23 PF13476.1 gi|302348012|ref|YP_003815650.1| - 0.074 13.3 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_31 PF13614.1 gi|302348012|ref|YP_003815650.1| - 0.14 12.0 0.1 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|302348012|ref|YP_003815650.1| - 0.17 11.4 0.2 0.62 9.5 0.1 1.9 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF87 PF01935.12 gi|302348012|ref|YP_003815650.1| - 0.17 11.6 0.3 0.36 10.6 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 Viral_helicase1 PF01443.13 gi|302348012|ref|YP_003815650.1| - 0.19 11.2 0.2 1.2 8.5 0.1 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase TRM PF02005.11 gi|302348013|ref|YP_003815651.1| - 1.5e-85 287.4 0.0 2.3e-85 286.8 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|302348013|ref|YP_003815651.1| - 0.00027 20.9 0.2 0.00063 19.7 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|302348013|ref|YP_003815651.1| - 0.00056 19.3 0.0 0.0017 17.7 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|302348013|ref|YP_003815651.1| - 0.0029 17.0 0.0 0.0061 15.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|302348013|ref|YP_003815651.1| - 0.0083 15.7 0.0 0.016 14.8 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_16 PF10294.4 gi|302348013|ref|YP_003815651.1| - 0.043 13.2 0.0 0.069 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_18 PF12847.2 gi|302348013|ref|YP_003815651.1| - 0.061 13.9 0.1 0.17 12.5 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302348013|ref|YP_003815651.1| - 0.064 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|302348013|ref|YP_003815651.1| - 0.084 11.9 0.1 0.12 11.5 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF373 PF04123.8 gi|302348014|ref|YP_003815652.1| - 5.3e-69 232.8 7.5 6.7e-69 232.5 5.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) tRNA_int_endo PF01974.12 gi|302348015|ref|YP_003815653.1| - 0.0057 16.4 0.1 0.024 14.4 0.0 1.9 1 1 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain T2SE PF00437.15 gi|302348017|ref|YP_003815655.1| - 8.8e-39 133.0 0.0 1.3e-38 132.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|302348017|ref|YP_003815655.1| - 0.0052 16.9 0.0 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|302348017|ref|YP_003815655.1| - 0.02 14.3 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|302348017|ref|YP_003815655.1| - 0.02 14.6 1.7 0.047 13.4 0.1 2.4 3 0 0 3 3 3 0 Part of AAA domain UPF0079 PF02367.12 gi|302348017|ref|YP_003815655.1| - 0.021 14.4 0.0 0.058 13.0 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_23 PF13476.1 gi|302348017|ref|YP_003815655.1| - 0.023 15.0 0.0 0.049 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|302348017|ref|YP_003815655.1| - 0.024 14.1 0.0 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|302348017|ref|YP_003815655.1| - 0.032 13.7 0.0 0.067 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|302348017|ref|YP_003815655.1| - 0.035 13.1 0.0 0.083 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.1 gi|302348017|ref|YP_003815655.1| - 0.037 14.3 0.0 0.077 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|302348017|ref|YP_003815655.1| - 0.046 13.2 0.1 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|302348017|ref|YP_003815655.1| - 0.056 13.7 0.0 0.17 12.1 0.0 1.8 2 0 0 2 2 2 0 ABC transporter AAA_17 PF13207.1 gi|302348017|ref|YP_003815655.1| - 0.069 13.9 0.0 0.26 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|302348017|ref|YP_003815655.1| - 0.071 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|302348017|ref|YP_003815655.1| - 0.087 12.8 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.1 gi|302348017|ref|YP_003815655.1| - 0.096 12.6 0.1 0.56 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|302348017|ref|YP_003815655.1| - 0.1 12.4 0.0 0.59 10.0 0.0 2.2 2 1 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|302348017|ref|YP_003815655.1| - 0.19 10.2 0.0 0.34 9.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MacB_PCD PF12704.2 gi|302348018|ref|YP_003815656.1| - 0.014 14.9 4.5 0.021 14.4 3.1 1.4 1 1 0 1 1 1 0 MacB-like periplasmic core domain MinC_C PF03775.11 gi|302348018|ref|YP_003815656.1| - 0.058 13.0 0.2 0.18 11.4 0.1 1.9 1 1 1 2 2 2 0 Septum formation inhibitor MinC, C-terminal domain DS PF01916.12 gi|302348019|ref|YP_003815657.1| - 5e-68 229.4 0.0 5.7e-68 229.2 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Topo-VIb_trans PF09239.6 gi|302348020|ref|YP_003815658.1| - 5.8e-62 207.9 0.0 1e-61 207.1 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|302348020|ref|YP_003815658.1| - 5.2e-13 48.6 0.0 1.3e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|302348020|ref|YP_003815658.1| - 1.4e-11 44.2 0.0 3.3e-11 42.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|302348020|ref|YP_003815658.1| - 0.0052 15.3 0.0 0.0096 14.5 0.0 1.4 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) Hom_end PF05204.9 gi|302348020|ref|YP_003815658.1| - 0.12 12.3 0.1 0.38 10.7 0.1 1.8 1 1 0 1 1 1 0 Homing endonuclease TP6A_N PF04406.9 gi|302348021|ref|YP_003815659.1| - 1.5e-21 75.7 0.1 2.5e-21 75.1 0.1 1.3 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF313 PF03754.8 gi|302348021|ref|YP_003815659.1| - 0.0093 15.8 0.1 0.028 14.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF313) DUF2399 PF09664.5 gi|302348021|ref|YP_003815659.1| - 0.021 14.6 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) HAD_2 PF13419.1 gi|302348021|ref|YP_003815659.1| - 0.028 14.6 0.1 0.086 13.0 0.0 1.8 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase PCNA_N PF00705.13 gi|302348022|ref|YP_003815660.1| - 1.5e-11 43.8 0.1 1.3e-10 40.8 0.0 2.0 1 1 1 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Hus1 PF04005.7 gi|302348022|ref|YP_003815660.1| - 6.3e-06 25.3 0.1 1.4e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 Hus1-like protein Rad9 PF04139.8 gi|302348022|ref|YP_003815660.1| - 0.02 14.0 0.2 0.047 12.8 0.1 1.8 1 1 0 1 1 1 0 Rad9 GvpD PF07088.6 gi|302348022|ref|YP_003815660.1| - 0.028 12.7 0.2 0.036 12.3 0.1 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein PCNA_C PF02747.10 gi|302348022|ref|YP_003815660.1| - 0.28 11.1 1.7 1.4 8.8 0.2 2.7 3 1 0 3 3 3 0 Proliferating cell nuclear antigen, C-terminal domain Ribosomal_S8 PF00410.14 gi|302348023|ref|YP_003815661.1| - 8.8e-27 93.4 0.0 1.2e-26 93.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|302348024|ref|YP_003815662.1| - 3e-17 61.7 1.5 3.4e-17 61.5 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|302348024|ref|YP_003815662.1| - 0.00021 20.8 2.2 0.00038 20.0 1.5 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Ribosomal_L37ae PF01780.14 gi|302348024|ref|YP_003815662.1| - 0.021 14.7 0.6 0.023 14.5 0.4 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family DZR PF12773.2 gi|302348024|ref|YP_003815662.1| - 0.07 12.9 1.5 0.1 12.4 1.0 1.3 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|302348024|ref|YP_003815662.1| - 0.071 12.6 0.2 0.071 12.6 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF1451 PF07295.6 gi|302348024|ref|YP_003815662.1| - 0.073 12.8 0.5 0.088 12.5 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Zn_Tnp_IS1595 PF12760.2 gi|302348024|ref|YP_003815662.1| - 0.093 12.5 2.1 0.12 12.2 1.5 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|302348024|ref|YP_003815662.1| - 0.1 12.2 0.7 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.5 gi|302348024|ref|YP_003815662.1| - 0.12 11.8 1.5 0.17 11.4 1.1 1.2 1 0 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_L5_C PF00673.16 gi|302348025|ref|YP_003815663.1| - 1.7e-21 75.7 0.0 2.8e-21 75.0 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|302348025|ref|YP_003815663.1| - 2.2e-16 59.3 0.3 4.9e-16 58.2 0.2 1.6 1 0 0 1 1 1 1 Ribosomal protein L5 B3_4 PF03483.12 gi|302348025|ref|YP_003815663.1| - 0.074 12.5 0.0 0.23 10.9 0.0 1.7 1 1 1 2 2 2 0 B3/4 domain Ribosomal_S4e PF00900.15 gi|302348026|ref|YP_003815664.1| - 7.6e-25 86.3 0.0 1.6e-24 85.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.20 gi|302348026|ref|YP_003815664.1| - 1e-11 44.0 0.1 1.9e-11 43.1 0.1 1.4 1 0 0 1 1 1 1 S4 domain RS4NT PF08071.7 gi|302348026|ref|YP_003815664.1| - 2e-10 40.3 3.4 3.7e-10 39.4 2.4 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain PetN PF03742.9 gi|302348026|ref|YP_003815664.1| - 0.001 18.6 1.0 0.0031 17.0 0.7 1.8 1 0 0 1 1 1 1 PetN KOW PF00467.24 gi|302348026|ref|YP_003815664.1| - 0.018 14.7 0.7 0.061 13.0 0.0 2.3 2 0 0 2 2 2 0 KOW motif KOW PF00467.24 gi|302348027|ref|YP_003815665.1| - 3.9e-06 26.3 6.2 9.2e-06 25.1 4.3 1.7 1 1 0 1 1 1 1 KOW motif SH3_3 PF08239.6 gi|302348027|ref|YP_003815665.1| - 0.06 13.5 0.1 0.13 12.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial SH3 domain Ribosomal_L14 PF00238.14 gi|302348028|ref|YP_003815666.1| - 1.8e-36 124.6 0.0 2.1e-36 124.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|302348029|ref|YP_003815667.1| - 2.1e-19 69.3 2.3 2.6e-19 69.0 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|302348030|ref|YP_003815668.1| - 6.4e-21 73.7 0.1 7.3e-21 73.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 RNaseH_C PF09293.5 gi|302348030|ref|YP_003815668.1| - 0.0074 16.1 0.0 0.0098 15.7 0.0 1.1 1 0 0 1 1 1 1 T4 RNase H, C terminal Ribosomal_L29 PF00831.18 gi|302348031|ref|YP_003815669.1| - 2.6e-18 65.4 3.0 3.6e-18 65.0 2.1 1.2 1 0 0 1 1 1 1 Ribosomal L29 protein NIT PF08376.5 gi|302348031|ref|YP_003815669.1| - 0.0025 17.3 0.9 0.0026 17.3 0.6 1.0 1 0 0 1 1 1 1 Nitrate and nitrite sensing MRP-L47 PF06984.8 gi|302348031|ref|YP_003815669.1| - 0.013 15.4 0.4 0.019 14.8 0.3 1.3 1 0 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) EzrA PF06160.7 gi|302348031|ref|YP_003815669.1| - 0.023 12.8 0.5 0.026 12.7 0.4 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA HTH_39 PF14090.1 gi|302348031|ref|YP_003815669.1| - 0.036 13.5 0.2 0.048 13.1 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Arena_RNA_pol PF06317.6 gi|302348031|ref|YP_003815669.1| - 0.057 10.0 0.4 0.062 9.8 0.3 1.0 1 0 0 1 1 1 0 Arenavirus RNA polymerase Allexi_40kDa PF05549.6 gi|302348031|ref|YP_003815669.1| - 0.058 12.6 0.2 0.069 12.4 0.2 1.0 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF1313 PF07011.6 gi|302348031|ref|YP_003815669.1| - 0.089 12.4 0.4 0.11 12.1 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1313) MerR-DNA-bind PF09278.6 gi|302348031|ref|YP_003815669.1| - 0.15 12.4 1.7 7.3 7.0 0.3 2.1 2 0 0 2 2 2 0 MerR, DNA binding DUF4208 PF13907.1 gi|302348031|ref|YP_003815669.1| - 0.17 12.1 0.7 0.2 11.8 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) HAUS-augmin3 PF14932.1 gi|302348031|ref|YP_003815669.1| - 0.18 10.9 1.6 0.2 10.7 1.1 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 FbpA PF05833.6 gi|302348031|ref|YP_003815669.1| - 0.19 10.2 3.3 0.24 9.9 2.3 1.0 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Syntaxin PF00804.20 gi|302348031|ref|YP_003815669.1| - 0.28 11.3 4.0 0.54 10.4 0.3 2.1 1 1 0 2 2 2 0 Syntaxin Ribosomal_S3_C PF00189.15 gi|302348032|ref|YP_003815670.1| - 2.7e-16 59.5 2.5 5.6e-16 58.5 0.2 2.4 3 0 0 3 3 3 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|302348032|ref|YP_003815670.1| - 1.9e-10 40.1 0.0 4.4e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|302348032|ref|YP_003815670.1| - 0.0011 18.6 0.2 0.0073 15.9 0.0 2.4 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|302348032|ref|YP_003815670.1| - 0.0018 17.8 0.2 0.0051 16.4 0.0 1.9 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|302348032|ref|YP_003815670.1| - 0.016 14.8 0.1 0.11 12.1 0.0 2.5 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|302348033|ref|YP_003815671.1| - 1.1e-34 118.5 0.1 1.3e-34 118.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|302348034|ref|YP_003815672.1| - 4e-26 90.4 0.2 5.2e-26 90.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 RNA_pol_Rpb2_4 PF04566.8 gi|302348034|ref|YP_003815672.1| - 0.028 14.2 0.1 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 4 DUF4172 PF13776.1 gi|302348034|ref|YP_003815672.1| - 0.069 13.2 0.1 15 5.7 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4172) Metal_resist PF13801.1 gi|302348034|ref|YP_003815672.1| - 0.1 12.6 0.5 0.14 12.1 0.3 1.2 1 0 0 1 1 1 0 Heavy-metal resistance Antitoxin-MazE PF04014.13 gi|302348035|ref|YP_003815673.1| - 9.3e-08 31.6 0.2 2.4e-07 30.3 0.0 1.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE ACT PF01842.20 gi|302348035|ref|YP_003815673.1| - 4.8e-05 22.7 0.2 9.6e-05 21.7 0.2 1.6 1 1 0 1 1 1 1 ACT domain MraZ PF02381.13 gi|302348035|ref|YP_003815673.1| - 0.00013 21.6 0.0 0.00025 20.7 0.0 1.5 1 0 0 1 1 1 1 MraZ protein ACT_4 PF13291.1 gi|302348035|ref|YP_003815673.1| - 0.011 16.0 0.8 0.025 14.9 0.6 1.6 1 1 0 1 1 1 0 ACT domain ACT_6 PF13740.1 gi|302348035|ref|YP_003815673.1| - 0.076 12.7 0.2 0.17 11.5 0.2 1.7 1 0 0 1 1 1 0 ACT domain tRNA-synt_1g PF09334.6 gi|302348036|ref|YP_003815674.1| - 2.7e-143 477.3 0.0 3.2e-143 477.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|302348036|ref|YP_003815674.1| - 1.9e-14 53.6 0.0 3.3e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1 PF00133.17 gi|302348036|ref|YP_003815674.1| - 3.2e-08 32.0 0.2 8.3e-07 27.3 0.0 3.0 2 2 1 3 3 3 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|302348036|ref|YP_003815674.1| - 0.011 14.8 0.0 0.051 12.6 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|302348036|ref|YP_003815674.1| - 0.02 14.6 4.9 0.23 11.2 3.6 2.0 1 1 1 2 2 2 0 Double zinc ribbon RRN7 PF11781.3 gi|302348036|ref|YP_003815674.1| - 0.028 13.9 0.4 1.4 8.4 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 tRNA-synt_1f PF01921.13 gi|302348036|ref|YP_003815674.1| - 0.05 12.2 0.0 1.6 7.2 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) zf-ribbon_3 PF13248.1 gi|302348036|ref|YP_003815674.1| - 0.94 8.7 10.1 8.1 5.7 3.7 3.1 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|302348036|ref|YP_003815674.1| - 1.7 8.2 6.3 2.7 7.5 0.2 3.0 3 1 0 3 3 3 0 zinc-ribbon domain NTP_transf_2 PF01909.18 gi|302348038|ref|YP_003815676.1| - 4.8e-06 26.8 0.0 7.4e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|302348038|ref|YP_003815676.1| - 0.0023 17.3 0.1 0.0045 16.3 0.0 1.5 1 1 0 1 1 1 1 Predicted nucleotidyltransferase HSP20 PF00011.16 gi|302348039|ref|YP_003815677.1| - 1.8e-11 43.8 1.1 3.4e-10 39.6 0.8 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|302348039|ref|YP_003815677.1| - 1.6e-07 31.7 0.1 3.2e-07 30.8 0.1 1.5 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|302348039|ref|YP_003815677.1| - 1.3e-06 28.1 0.4 1.6e-06 27.8 0.3 1.2 1 0 0 1 1 1 1 GvpH DUF3211 PF11485.3 gi|302348039|ref|YP_003815677.1| - 0.046 13.7 0.6 0.2 11.6 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3211) Pup PF05639.6 gi|302348039|ref|YP_003815677.1| - 0.072 13.6 2.3 0.072 13.6 1.6 1.9 2 0 0 2 2 2 0 Pup-like protein PIH1 PF08190.7 gi|302348039|ref|YP_003815677.1| - 0.079 12.3 0.0 0.1 12.0 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 DAO PF01266.19 gi|302348040|ref|YP_003815678.1| - 5.8e-09 35.3 0.0 5.3e-05 22.2 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|302348040|ref|YP_003815678.1| - 9.2e-08 31.5 0.3 0.0021 17.2 0.1 2.8 2 1 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|302348040|ref|YP_003815678.1| - 5.6e-06 26.3 0.0 1.6e-05 24.9 0.0 1.7 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|302348040|ref|YP_003815678.1| - 0.00012 21.0 0.1 0.4 9.4 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|302348040|ref|YP_003815678.1| - 0.00016 20.8 0.0 0.00066 18.8 0.0 2.0 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|302348040|ref|YP_003815678.1| - 0.00033 19.8 0.1 0.0013 17.8 0.1 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|302348040|ref|YP_003815678.1| - 0.0028 16.6 0.1 0.021 13.7 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|302348040|ref|YP_003815678.1| - 0.0041 17.1 1.5 0.038 14.0 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|302348040|ref|YP_003815678.1| - 0.011 14.3 0.1 1.3 7.5 0.0 2.7 2 1 0 2 2 2 0 Tryptophan halogenase TrkA_N PF02254.13 gi|302348040|ref|YP_003815678.1| - 0.12 12.3 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain tRNA-synt_1e PF01406.14 gi|302348041|ref|YP_003815679.1| - 3.2e-123 410.6 0.0 5.1e-123 410.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|302348041|ref|YP_003815679.1| - 1.9e-17 63.0 0.3 2.4e-10 39.6 0.1 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|302348041|ref|YP_003815679.1| - 4.8e-07 28.1 0.1 1.4e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.16 gi|302348041|ref|YP_003815679.1| - 0.0069 15.0 0.1 0.17 10.4 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1f PF01921.13 gi|302348041|ref|YP_003815679.1| - 0.061 11.9 0.1 0.38 9.3 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) UbiA PF01040.13 gi|302348042|ref|YP_003815680.1| - 3.6e-29 101.7 21.2 4.3e-29 101.5 14.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Cation_efflux PF01545.16 gi|302348043|ref|YP_003815681.1| - 0.038 13.0 3.9 0.045 12.8 2.7 1.1 1 0 0 1 1 1 0 Cation efflux family Ribosomal_L11_N PF03946.9 gi|302348044|ref|YP_003815682.1| - 3.1e-24 84.2 0.8 6.7e-24 83.1 0.5 1.6 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|302348044|ref|YP_003815682.1| - 6.9e-18 64.5 1.7 6.9e-18 64.5 1.2 1.7 2 1 0 2 2 2 1 Ribosomal protein L11, RNA binding domain DUF2823 PF11034.3 gi|302348044|ref|YP_003815682.1| - 0.036 14.1 0.5 0.074 13.1 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2823) AFOR_N PF02730.10 gi|302348045|ref|YP_003815683.1| - 1.3e-32 112.8 0.1 2e-32 112.1 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|302348045|ref|YP_003815683.1| - 7.2e-14 51.2 0.0 5.1e-13 48.4 0.0 2.0 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 DUF2411 PF10304.4 gi|302348045|ref|YP_003815683.1| - 0.065 12.7 0.2 0.13 11.8 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2411) tRNA-synt_2c PF01411.14 gi|302348046|ref|YP_003815684.1| - 1.6e-110 369.9 0.0 7.6e-110 367.7 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|302348046|ref|YP_003815684.1| - 5.8e-14 51.7 1.0 1.2e-13 50.6 0.7 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain GvpO PF05800.6 gi|302348046|ref|YP_003815684.1| - 0.009 15.8 0.0 0.025 14.4 0.0 1.7 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO Ribosomal_60s PF00428.14 gi|302348047|ref|YP_003815685.1| - 3e-16 59.5 9.8 3.9e-16 59.2 6.8 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.1 gi|302348047|ref|YP_003815685.1| - 0.0046 16.8 6.9 1.2 9.1 2.7 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DUF177 PF02620.12 gi|302348047|ref|YP_003815685.1| - 0.039 13.9 0.1 0.044 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1399 DUF4340 PF14238.1 gi|302348047|ref|YP_003815685.1| - 0.093 12.4 0.2 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4340) Ribosomal_L10 PF00466.15 gi|302348048|ref|YP_003815686.1| - 2.3e-20 72.3 0.4 2.3e-20 72.3 0.3 1.6 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|302348048|ref|YP_003815686.1| - 0.00029 21.1 13.5 0.00075 19.8 9.3 1.8 1 0 0 1 1 1 1 60s Acidic ribosomal protein Ribosomal_L1 PF00687.16 gi|302348049|ref|YP_003815687.1| - 1.4e-40 138.9 0.0 1.6e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family RE_R_Pab1 PF09522.5 gi|302348050|ref|YP_003815688.1| - 1.9e-16 60.2 0.1 2.4e-16 59.8 0.1 1.2 1 0 0 1 1 1 1 R.Pab1 restriction endonuclease N6_Mtase PF02384.11 gi|302348051|ref|YP_003815689.1| - 9.8e-23 80.6 0.0 9.7e-22 77.4 0.0 2.0 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|302348051|ref|YP_003815689.1| - 2.1e-13 50.3 0.0 3.5e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|302348051|ref|YP_003815689.1| - 0.00034 20.2 0.0 0.00062 19.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|302348051|ref|YP_003815689.1| - 0.00048 19.8 0.0 0.0012 18.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|302348051|ref|YP_003815689.1| - 0.00053 20.3 0.0 0.0011 19.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|302348051|ref|YP_003815689.1| - 0.0007 19.9 0.0 0.0015 18.8 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methylase_S PF01420.14 gi|302348051|ref|YP_003815689.1| - 0.0012 18.8 0.0 0.0029 17.6 0.0 1.6 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain Methyltransf_11 PF08241.7 gi|302348051|ref|YP_003815689.1| - 0.0021 18.5 0.0 0.005 17.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302348051|ref|YP_003815689.1| - 0.0077 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|302348051|ref|YP_003815689.1| - 0.011 15.0 0.0 0.022 14.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Act-Frag_cataly PF09192.5 gi|302348051|ref|YP_003815689.1| - 0.057 12.3 0.1 0.097 11.6 0.0 1.3 1 0 0 1 1 1 0 Actin-fragmin kinase, catalytic DZR PF12773.2 gi|302348054|ref|YP_003815692.1| - 0.00069 19.3 4.1 0.029 14.2 1.8 2.4 1 1 0 2 2 2 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|302348054|ref|YP_003815692.1| - 0.00098 19.0 3.6 0.0047 16.8 1.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|302348054|ref|YP_003815692.1| - 0.0025 17.9 2.8 2.8 8.3 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.7 gi|302348054|ref|YP_003815692.1| - 0.0027 16.9 5.5 0.0079 15.4 1.4 2.4 2 1 0 2 2 2 1 TFIIB zinc-binding DUF2296 PF10058.4 gi|302348054|ref|YP_003815692.1| - 0.0033 17.1 2.0 0.0033 17.1 1.4 2.4 1 1 1 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) DUF1272 PF06906.6 gi|302348054|ref|YP_003815692.1| - 0.0059 16.4 2.0 0.5 10.2 1.4 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) zf-C2HC5 PF06221.8 gi|302348054|ref|YP_003815692.1| - 0.018 14.8 2.1 0.06 13.1 0.3 2.1 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-Di19 PF05605.7 gi|302348054|ref|YP_003815692.1| - 0.02 15.0 3.9 1.2 9.2 0.1 2.7 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|302348054|ref|YP_003815692.1| - 0.029 14.1 1.0 6.8 6.5 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn_ribbon_recom PF13408.1 gi|302348054|ref|YP_003815692.1| - 0.03 14.5 3.3 0.18 12.1 0.5 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-C4_Topoisom PF01396.14 gi|302348054|ref|YP_003815692.1| - 0.031 13.7 3.1 0.92 9.0 0.0 2.7 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.1 gi|302348054|ref|YP_003815692.1| - 0.037 14.0 2.4 18 5.4 0.0 3.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.3 gi|302348054|ref|YP_003815692.1| - 0.038 13.8 6.9 1 9.3 2.1 2.5 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin PF00301.15 gi|302348054|ref|YP_003815692.1| - 0.04 13.7 4.4 3.7 7.4 1.0 2.9 2 1 0 2 2 2 0 Rubredoxin zf-BED PF02892.10 gi|302348054|ref|YP_003815692.1| - 0.043 13.5 2.0 2.3 8.0 0.0 2.6 2 1 1 3 3 3 0 BED zinc finger DUF164 PF02591.10 gi|302348054|ref|YP_003815692.1| - 0.044 13.6 1.6 9.9 6.0 0.0 3.1 3 0 0 3 3 3 0 Putative zinc ribbon domain zf-MYND PF01753.13 gi|302348054|ref|YP_003815692.1| - 0.054 13.3 1.3 0.38 10.6 0.9 2.0 1 1 0 1 1 1 0 MYND finger Zn_Tnp_IS1595 PF12760.2 gi|302348054|ref|YP_003815692.1| - 0.061 13.1 9.1 0.41 10.5 2.8 2.9 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|302348054|ref|YP_003815692.1| - 0.071 12.6 7.2 1.5 8.3 0.1 3.2 2 1 1 3 3 3 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|302348054|ref|YP_003815692.1| - 0.071 12.5 4.4 2.4 7.6 0.0 3.1 3 1 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|302348054|ref|YP_003815692.1| - 0.073 12.3 7.3 1.1 8.4 0.1 3.3 3 1 0 3 3 3 0 zinc-ribbon domain zf-CHY PF05495.7 gi|302348054|ref|YP_003815692.1| - 0.075 13.2 2.0 0.41 10.8 0.1 2.0 1 1 1 2 2 2 0 CHY zinc finger zf-C2H2_4 PF13894.1 gi|302348054|ref|YP_003815692.1| - 0.078 13.3 5.0 11 6.6 0.1 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger HypA PF01155.14 gi|302348054|ref|YP_003815692.1| - 0.12 12.0 3.0 2.3 7.9 2.1 2.2 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-Sec23_Sec24 PF04810.10 gi|302348054|ref|YP_003815692.1| - 0.13 11.8 8.0 0.1 12.1 1.1 2.8 2 1 0 2 2 2 0 Sec23/Sec24 zinc finger OrfB_Zn_ribbon PF07282.6 gi|302348054|ref|YP_003815692.1| - 0.14 11.8 4.3 0.2 11.3 0.5 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|302348054|ref|YP_003815692.1| - 0.16 11.6 4.2 9.4 6.0 0.0 3.1 3 0 0 3 3 3 0 Nudix N-terminal Tnp_zf-ribbon_2 PF13842.1 gi|302348054|ref|YP_003815692.1| - 0.16 12.3 7.4 3 8.3 5.1 2.5 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DUF1610 PF07754.6 gi|302348054|ref|YP_003815692.1| - 0.18 11.9 7.4 1.8 8.7 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1 PF03811.8 gi|302348054|ref|YP_003815692.1| - 0.2 11.1 1.8 15 5.2 0.0 3.1 3 0 0 3 3 3 0 InsA N-terminal domain Mu-like_Com PF10122.4 gi|302348054|ref|YP_003815692.1| - 0.22 10.5 7.4 0.76 8.8 0.2 2.5 2 1 0 2 2 2 0 Mu-like prophage protein Com zinc-ribbons_6 PF07191.7 gi|302348054|ref|YP_003815692.1| - 0.23 11.2 4.2 0.66 9.8 1.5 2.4 1 1 1 2 2 2 0 zinc-ribbons DUF2387 PF09526.5 gi|302348054|ref|YP_003815692.1| - 0.27 11.1 1.5 0.37 10.7 0.4 1.7 2 0 0 2 2 1 0 Probable metal-binding protein (DUF2387) zf-HIT PF04438.11 gi|302348054|ref|YP_003815692.1| - 0.28 10.8 12.7 2.5 7.8 0.9 3.2 2 1 1 3 3 3 0 HIT zinc finger zf-LITAF-like PF10601.4 gi|302348054|ref|YP_003815692.1| - 0.28 11.0 3.0 6.2 6.7 0.1 2.9 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|302348054|ref|YP_003815692.1| - 0.31 10.7 8.4 6.7 6.4 5.8 2.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DNA_ligase_ZBD PF03119.11 gi|302348054|ref|YP_003815692.1| - 0.36 10.5 0.2 0.36 10.5 0.2 2.6 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.21 gi|302348054|ref|YP_003815692.1| - 0.41 11.0 5.2 33 5.0 0.2 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type zinc_ribbon_5 PF13719.1 gi|302348054|ref|YP_003815692.1| - 0.41 10.2 3.9 20 4.8 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain CpXC PF14353.1 gi|302348054|ref|YP_003815692.1| - 0.43 10.5 2.7 5.3 7.0 0.0 2.7 2 1 0 3 3 3 0 CpXC protein Terminase_GpA PF05876.7 gi|302348054|ref|YP_003815692.1| - 0.44 8.8 1.8 2.1 6.6 0.1 1.9 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) Cys_rich_CPXG PF14255.1 gi|302348054|ref|YP_003815692.1| - 0.48 10.2 4.5 3.3 7.6 0.1 3.0 3 0 0 3 3 3 0 Cysteine-rich CPXCG Ribosomal_L37ae PF01780.14 gi|302348054|ref|YP_003815692.1| - 0.63 9.9 2.6 8.1 6.3 0.0 2.4 1 1 1 2 2 2 0 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.8 gi|302348054|ref|YP_003815692.1| - 0.67 9.4 7.1 6.6 6.2 0.1 3.3 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_S27e PF01667.12 gi|302348054|ref|YP_003815692.1| - 0.83 9.2 5.4 13 5.4 0.1 3.0 2 1 0 3 3 3 0 Ribosomal protein S27 zf-RING_5 PF14634.1 gi|302348054|ref|YP_003815692.1| - 0.94 9.2 7.6 23 4.7 5.2 2.7 1 1 0 1 1 1 0 zinc-RING finger domain zinc_ribbon_4 PF13717.1 gi|302348054|ref|YP_003815692.1| - 0.96 9.1 4.9 21 4.9 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-AN1 PF01428.11 gi|302348054|ref|YP_003815692.1| - 1.1 9.2 5.6 47 3.9 0.0 3.0 2 1 1 3 3 3 0 AN1-like Zinc finger Cript PF10235.4 gi|302348054|ref|YP_003815692.1| - 1.4 9.3 4.4 1.3 9.4 0.6 2.0 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT UPF0547 PF10571.4 gi|302348054|ref|YP_003815692.1| - 1.7 8.4 8.6 4.5 7.0 3.3 2.9 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.5 gi|302348054|ref|YP_003815692.1| - 2.2 7.8 6.7 9 5.8 0.1 3.2 3 1 0 3 3 3 0 A2L zinc ribbon domain C1_4 PF07975.7 gi|302348054|ref|YP_003815692.1| - 2.6 8.1 6.2 1.9e+02 2.1 4.7 2.6 1 1 1 2 2 2 0 TFIIH C1-like domain zf-B_box PF00643.19 gi|302348054|ref|YP_003815692.1| - 2.9 7.8 5.6 9.8 6.1 2.1 2.7 2 1 0 2 2 2 0 B-box zinc finger Lar_restr_allev PF14354.1 gi|302348054|ref|YP_003815692.1| - 2.9 8.2 9.5 1.1 9.6 0.3 2.7 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-HYPF PF07503.7 gi|302348054|ref|YP_003815692.1| - 7.7 6.0 8.5 22 4.5 0.2 3.7 4 0 0 4 4 4 0 HypF finger FYVE PF01363.16 gi|302348054|ref|YP_003815692.1| - 7.7 6.4 8.4 7 6.6 1.7 2.1 1 1 1 2 2 2 0 FYVE zinc finger C1_3 PF07649.7 gi|302348054|ref|YP_003815692.1| - 9.9 6.2 7.7 27 4.9 0.6 3.1 3 1 0 3 3 3 0 C1-like domain Novirhabdo_Nv PF05554.6 gi|302348056|ref|YP_003815694.1| - 0.0021 17.6 0.0 0.0025 17.3 0.0 1.1 1 0 0 1 1 1 1 Viral hemorrhagic septicemia virus non-virion protein Wyosine_form PF08608.7 gi|302348057|ref|YP_003815695.1| - 1.9e-21 75.9 0.0 4.2e-21 74.7 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|302348057|ref|YP_003815695.1| - 7.6e-18 65.2 0.0 2.2e-17 63.7 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily HAD_2 PF13419.1 gi|302348057|ref|YP_003815695.1| - 0.0072 16.5 0.0 0.013 15.7 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF3928 PF13065.1 gi|302348057|ref|YP_003815695.1| - 0.08 13.2 0.1 0.32 11.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3928) Pyr_redox_2 PF07992.9 gi|302348058|ref|YP_003815696.1| - 2.3e-29 102.7 0.1 3.1e-29 102.3 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|302348058|ref|YP_003815696.1| - 7.6e-17 61.4 1.9 1.8e-11 44.3 0.1 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|302348058|ref|YP_003815696.1| - 1.3e-16 61.2 0.3 1.3e-11 44.9 0.0 3.0 1 1 2 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|302348058|ref|YP_003815696.1| - 7.4e-09 34.9 2.3 0.00018 20.5 0.5 4.0 2 2 1 4 4 4 2 FAD binding domain DAO PF01266.19 gi|302348058|ref|YP_003815696.1| - 1.1e-08 34.4 1.9 0.00082 18.3 0.0 2.6 2 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|302348058|ref|YP_003815696.1| - 3.2e-07 29.1 1.1 0.015 13.8 0.2 3.4 2 1 1 3 3 3 3 HI0933-like protein GIDA PF01134.17 gi|302348058|ref|YP_003815696.1| - 8.4e-06 24.8 3.5 0.0062 15.4 0.0 3.8 4 0 0 4 4 4 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|302348058|ref|YP_003815696.1| - 1.6e-05 24.1 0.0 0.00018 20.7 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|302348058|ref|YP_003815696.1| - 6.3e-05 22.1 1.8 0.0078 15.2 0.6 2.6 2 1 1 3 3 3 1 FAD binding domain K_oxygenase PF13434.1 gi|302348058|ref|YP_003815696.1| - 0.0001 21.3 0.0 1.7 7.4 0.0 3.1 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|302348058|ref|YP_003815696.1| - 0.00013 21.1 2.8 0.00021 20.4 0.0 2.5 3 0 0 3 3 3 1 Thi4 family NAD_binding_7 PF13241.1 gi|302348058|ref|YP_003815696.1| - 0.0014 18.8 0.5 1.3 9.3 0.0 2.3 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|302348058|ref|YP_003815696.1| - 0.0078 16.2 0.0 0.0078 16.2 0.0 2.0 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|302348058|ref|YP_003815696.1| - 0.026 13.1 0.4 0.56 8.7 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|302348058|ref|YP_003815696.1| - 0.032 13.9 0.1 7.2 6.3 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|302348058|ref|YP_003815696.1| - 0.056 12.3 1.2 0.31 9.8 0.2 2.3 2 1 0 3 3 3 0 Lycopene cyclase protein FCD PF07729.7 gi|302348059|ref|YP_003815697.1| - 7.3e-28 97.4 4.7 1e-27 96.9 3.2 1.2 1 0 0 1 1 1 1 FCD domain GntR PF00392.16 gi|302348059|ref|YP_003815697.1| - 4.1e-18 64.5 0.4 4e-17 61.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|302348059|ref|YP_003815697.1| - 0.00029 20.1 0.0 0.00091 18.5 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|302348059|ref|YP_003815697.1| - 0.001 18.9 0.2 0.006 16.4 0.0 2.3 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|302348059|ref|YP_003815697.1| - 0.0011 18.5 0.0 0.0052 16.4 0.0 2.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|302348059|ref|YP_003815697.1| - 0.0011 19.1 0.0 0.0028 17.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|302348059|ref|YP_003815697.1| - 0.0012 18.4 0.0 0.0036 16.9 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|302348059|ref|YP_003815697.1| - 0.0028 17.3 0.0 0.013 15.2 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|302348059|ref|YP_003815697.1| - 0.0043 17.1 0.0 0.036 14.1 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator DUF1128 PF06569.6 gi|302348059|ref|YP_003815697.1| - 0.0045 16.6 0.4 0.016 14.8 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1128) MarR PF01047.17 gi|302348059|ref|YP_003815697.1| - 0.0048 16.5 0.0 0.012 15.2 0.0 1.7 1 1 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|302348059|ref|YP_003815697.1| - 0.0076 15.7 0.0 0.02 14.3 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain EAP30 PF04157.11 gi|302348059|ref|YP_003815697.1| - 0.03 13.5 0.2 0.35 9.9 0.0 2.2 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_36 PF13730.1 gi|302348059|ref|YP_003815697.1| - 0.034 14.2 0.0 0.077 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DrrA_P4M PF14860.1 gi|302348059|ref|YP_003815697.1| - 0.062 13.0 1.4 1.2 8.8 0.1 2.6 2 1 1 3 3 3 0 DrrA phosphatidylinositol 4-phosphate binding domain DUF2203 PF09969.4 gi|302348059|ref|YP_003815697.1| - 0.071 13.3 0.5 0.73 10.0 0.0 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DNA_ligase_A_N PF04675.9 gi|302348059|ref|YP_003815697.1| - 0.074 12.8 0.3 0.13 12.0 0.2 1.6 1 1 0 1 1 1 0 DNA ligase N terminus DUF4404 PF14357.1 gi|302348059|ref|YP_003815697.1| - 0.15 12.5 4.2 2.3 8.6 0.6 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4404) Lactamase_B_2 PF12706.2 gi|302348061|ref|YP_003815699.1| - 4.6e-08 32.8 0.0 1.4e-06 28.0 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DRMBL PF07522.9 gi|302348061|ref|YP_003815699.1| - 0.00062 19.7 0.0 0.0014 18.6 0.0 1.6 1 0 0 1 1 1 1 DNA repair metallo-beta-lactamase Lactamase_B PF00753.22 gi|302348061|ref|YP_003815699.1| - 0.0027 17.3 1.8 0.24 11.0 0.0 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|302348061|ref|YP_003815699.1| - 0.008 15.9 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase T2SS-T3SS_pil_N PF13629.1 gi|302348062|ref|YP_003815700.1| - 0.0064 15.9 0.1 0.0073 15.8 0.1 1.1 1 0 0 1 1 1 1 Pilus formation protein N terminal region FdhE PF04216.7 gi|302348063|ref|YP_003815701.1| - 3.6e-18 66.3 0.0 4.3e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Lar_restr_allev PF14354.1 gi|302348063|ref|YP_003815701.1| - 6.9e-08 32.6 4.8 0.0031 17.7 0.1 2.4 1 1 1 2 2 2 2 Restriction alleviation protein Lar DZR PF12773.2 gi|302348063|ref|YP_003815701.1| - 2.4e-05 24.0 1.8 0.0012 18.5 0.6 2.3 2 0 0 2 2 2 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|302348063|ref|YP_003815701.1| - 0.00061 19.5 2.4 0.00061 19.5 1.6 3.1 2 2 0 2 2 2 1 PhnA Zinc-Ribbon zf-C3HC4_3 PF13920.1 gi|302348063|ref|YP_003815701.1| - 0.0016 18.0 3.3 0.0041 16.7 0.8 2.1 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) Elf1 PF05129.8 gi|302348063|ref|YP_003815701.1| - 0.0025 17.4 0.4 0.55 9.9 0.0 2.3 2 0 0 2 2 2 1 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|302348063|ref|YP_003815701.1| - 0.019 14.6 3.5 0.35 10.5 0.2 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|302348063|ref|YP_003815701.1| - 0.023 14.6 3.3 4.6 7.2 0.1 3.3 3 0 0 3 3 3 0 Zinc ribbon domain DUF3039 PF11238.3 gi|302348063|ref|YP_003815701.1| - 0.034 13.5 1.2 0.034 13.5 0.8 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3039) zf-ribbon_3 PF13248.1 gi|302348063|ref|YP_003815701.1| - 0.04 13.1 12.8 9.1 5.6 3.6 3.7 3 1 0 3 3 3 0 zinc-ribbon domain FYVE PF01363.16 gi|302348063|ref|YP_003815701.1| - 0.05 13.4 0.3 0.15 12.0 0.2 1.8 1 1 0 1 1 1 0 FYVE zinc finger HypA PF01155.14 gi|302348063|ref|YP_003815701.1| - 0.069 12.8 4.5 0.88 9.2 0.1 3.3 2 1 2 4 4 4 0 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|302348063|ref|YP_003815701.1| - 0.083 12.5 14.7 0.49 10.1 0.1 4.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|302348063|ref|YP_003815701.1| - 0.12 11.9 7.4 0.22 11.0 0.6 3.4 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|302348063|ref|YP_003815701.1| - 0.12 11.7 9.6 1.9 7.8 1.9 3.2 2 1 1 3 3 3 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|302348063|ref|YP_003815701.1| - 0.12 11.8 13.5 0.35 10.4 0.1 4.0 3 1 1 4 4 4 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|302348063|ref|YP_003815701.1| - 0.18 11.6 10.7 14 5.5 0.7 3.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|302348063|ref|YP_003815701.1| - 0.22 10.9 5.5 4.5 6.8 0.2 2.6 1 1 0 2 2 2 0 Cysteine-rich KTR Nudix_N_2 PF14803.1 gi|302348063|ref|YP_003815701.1| - 0.24 11.1 9.7 0.98 9.1 0.8 3.5 3 0 0 3 3 3 0 Nudix N-terminal TerY-C PF15616.1 gi|302348063|ref|YP_003815701.1| - 0.27 11.1 5.6 1.7 8.5 2.6 2.3 1 1 1 2 2 2 0 TerY-C metal binding domain Prim_Zn_Ribbon PF08273.7 gi|302348063|ref|YP_003815701.1| - 0.39 10.8 12.0 0.16 12.0 2.6 2.7 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase NMD3 PF04981.8 gi|302348063|ref|YP_003815701.1| - 0.51 9.4 2.1 1.8 7.6 1.5 1.8 1 1 0 1 1 1 0 NMD3 family Cys_rich_CPXG PF14255.1 gi|302348063|ref|YP_003815701.1| - 0.76 9.6 4.6 7.8 6.4 0.1 2.7 2 0 0 2 2 2 0 Cysteine-rich CPXCG NOB1_Zn_bind PF08772.6 gi|302348063|ref|YP_003815701.1| - 1 9.1 9.8 0.3 10.9 0.2 3.2 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-Sec23_Sec24 PF04810.10 gi|302348063|ref|YP_003815701.1| - 1.3 8.6 8.6 3.6 7.2 0.4 3.9 2 1 0 3 3 3 0 Sec23/Sec24 zinc finger GATA PF00320.22 gi|302348063|ref|YP_003815701.1| - 2.6 7.4 5.6 13 5.2 1.6 2.5 1 1 2 3 3 3 0 GATA zinc finger zf-ISL3 PF14690.1 gi|302348063|ref|YP_003815701.1| - 2.7 8.1 8.7 2.2 8.3 0.4 3.0 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C3HC4_2 PF13923.1 gi|302348063|ref|YP_003815701.1| - 6.5 6.8 9.0 25 4.9 3.4 2.8 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) ETF PF01012.16 gi|302348064|ref|YP_003815702.1| - 2.2e-35 121.7 0.0 5.5e-35 120.4 0.0 1.6 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|302348064|ref|YP_003815702.1| - 1e-31 108.3 1.9 2.3e-31 107.2 1.3 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|302348065|ref|YP_003815703.1| - 2.6e-33 115.0 0.1 3.9e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Fer4_7 PF12838.2 gi|302348066|ref|YP_003815704.1| - 1.7e-08 34.7 9.4 0.00019 21.7 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|302348066|ref|YP_003815704.1| - 2.2e-06 27.2 14.6 0.00063 19.5 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|302348066|ref|YP_003815704.1| - 8.6e-06 25.1 3.9 8.6e-06 25.1 2.7 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|302348066|ref|YP_003815704.1| - 6.4e-05 22.6 23.5 0.0015 18.3 9.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|302348066|ref|YP_003815704.1| - 0.00098 18.9 6.5 0.0013 18.5 4.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|302348066|ref|YP_003815704.1| - 0.0019 18.0 17.6 0.0077 16.0 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|302348066|ref|YP_003815704.1| - 0.0053 17.0 11.4 0.041 14.2 1.4 2.2 1 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|302348066|ref|YP_003815704.1| - 0.0076 16.4 15.8 0.075 13.3 11.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|302348066|ref|YP_003815704.1| - 0.0086 16.0 2.9 0.0086 16.0 2.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|302348066|ref|YP_003815704.1| - 0.021 15.1 3.4 0.021 15.1 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|302348066|ref|YP_003815704.1| - 0.034 14.6 18.7 0.099 13.2 4.0 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|302348066|ref|YP_003815704.1| - 0.049 14.3 1.1 0.049 14.3 0.8 2.4 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|302348066|ref|YP_003815704.1| - 0.076 12.8 14.4 0.54 10.1 10.2 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain DAO PF01266.19 gi|302348067|ref|YP_003815705.1| - 2.3e-17 62.9 3.8 5.9e-08 31.9 0.9 2.8 2 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|302348067|ref|YP_003815705.1| - 2.5e-08 33.2 0.2 1.3e-06 27.7 0.1 2.4 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|302348067|ref|YP_003815705.1| - 6.3e-08 32.7 0.5 9.8e-08 32.1 0.3 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|302348067|ref|YP_003815705.1| - 1.7e-07 30.4 0.6 4.5e-07 29.0 0.4 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|302348067|ref|YP_003815705.1| - 2.9e-07 29.7 1.9 2.1e-06 26.8 0.5 2.2 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|302348067|ref|YP_003815705.1| - 4.3e-07 28.7 0.6 1.9e-06 26.6 0.2 1.8 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|302348067|ref|YP_003815705.1| - 4.5e-07 29.3 1.7 8.8e-07 28.3 1.2 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|302348067|ref|YP_003815705.1| - 6.8e-07 29.2 0.4 1.8e-06 27.8 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|302348067|ref|YP_003815705.1| - 2.4e-06 26.7 0.4 1.4e-05 24.2 0.3 1.9 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|302348067|ref|YP_003815705.1| - 5.4e-06 26.6 0.1 1.6e-05 25.1 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|302348067|ref|YP_003815705.1| - 1.1e-05 24.6 0.3 3.9e-05 22.8 0.1 1.9 1 1 1 2 2 2 1 FAD binding domain GDI PF00996.13 gi|302348067|ref|YP_003815705.1| - 4.6e-05 21.9 0.0 0.04 12.2 0.0 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor Trp_halogenase PF04820.9 gi|302348067|ref|YP_003815705.1| - 0.00011 20.9 0.1 0.2 10.2 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase ThiF PF00899.16 gi|302348067|ref|YP_003815705.1| - 0.0034 17.1 0.0 0.0085 15.9 0.0 1.7 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.15 gi|302348067|ref|YP_003815705.1| - 0.0065 16.5 0.0 0.018 15.1 0.0 1.7 2 0 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|302348067|ref|YP_003815705.1| - 0.017 14.7 0.1 0.03 13.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Chlorosome_CsmC PF11098.3 gi|302348067|ref|YP_003815705.1| - 0.029 14.0 0.5 0.056 13.1 0.3 1.5 1 0 0 1 1 1 0 Chlorosome envelope protein C ApbA PF02558.11 gi|302348067|ref|YP_003815705.1| - 0.055 12.9 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.1 gi|302348067|ref|YP_003815705.1| - 0.062 13.0 0.4 0.71 9.6 0.3 2.2 1 1 0 1 1 1 0 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|302348067|ref|YP_003815705.1| - 0.3 11.5 2.9 0.84 10.0 0.2 3.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase eIF-5_eIF-2B PF01873.12 gi|302348068|ref|YP_003815706.1| - 3.5e-31 107.4 0.0 4.1e-31 107.2 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.1 gi|302348068|ref|YP_003815706.1| - 0.0043 17.3 0.1 0.0075 16.5 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|302348068|ref|YP_003815706.1| - 0.0082 15.3 0.6 0.016 14.4 0.4 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger Elf1 PF05129.8 gi|302348068|ref|YP_003815706.1| - 0.014 15.0 0.4 0.021 14.4 0.3 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like PhnA_Zn_Ribbon PF08274.7 gi|302348068|ref|YP_003815706.1| - 0.024 14.4 1.6 0.19 11.5 1.2 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|302348068|ref|YP_003815706.1| - 0.034 13.3 0.4 3.9 6.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|302348068|ref|YP_003815706.1| - 0.039 13.6 0.4 0.067 12.8 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|302348068|ref|YP_003815706.1| - 0.07 12.9 0.5 0.19 11.5 0.4 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|302348068|ref|YP_003815706.1| - 0.092 12.2 1.6 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF678 PF05077.7 gi|302348068|ref|YP_003815706.1| - 0.1 12.5 2.0 6.7 6.7 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF678) DUF2387 PF09526.5 gi|302348068|ref|YP_003815706.1| - 0.11 12.4 0.4 0.2 11.5 0.3 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DRP PF06044.7 gi|302348068|ref|YP_003815706.1| - 0.12 11.2 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 Dam-replacing family GcpE PF04551.9 gi|302348068|ref|YP_003815706.1| - 0.13 11.0 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 GcpE protein A2L_zn_ribbon PF08792.5 gi|302348068|ref|YP_003815706.1| - 0.15 11.5 1.0 7.6 6.1 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|302348068|ref|YP_003815706.1| - 0.2 11.2 1.3 13 5.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|302348068|ref|YP_003815706.1| - 0.29 11.0 3.7 2 8.4 0.1 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-FPG_IleRS PF06827.9 gi|302348068|ref|YP_003815706.1| - 0.48 10.1 2.1 0.53 9.9 0.4 1.8 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.7 gi|302348068|ref|YP_003815706.1| - 0.75 9.1 2.7 2.4 7.5 1.9 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|302348068|ref|YP_003815706.1| - 0.76 9.7 3.5 4.5 7.3 0.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain tRNA-synt_2b PF00587.20 gi|302348069|ref|YP_003815707.1| - 2.5e-33 115.0 0.0 4e-33 114.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|302348069|ref|YP_003815707.1| - 1.3e-24 86.3 9.4 2.6e-24 85.3 6.5 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain ALIX_LYPXL_bnd PF13949.1 gi|302348069|ref|YP_003815707.1| - 0.036 13.0 2.6 0.064 12.2 1.8 1.3 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV DUF2205 PF10224.4 gi|302348069|ref|YP_003815707.1| - 0.1 12.1 4.3 0.11 12.0 1.8 1.9 1 1 1 2 2 2 0 Predicted coiled-coil protein (DUF2205) TPR_MLP1_2 PF07926.7 gi|302348069|ref|YP_003815707.1| - 0.13 11.9 6.8 0.27 11.0 4.7 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein TBPIP PF07106.8 gi|302348069|ref|YP_003815707.1| - 0.25 10.8 4.6 0.56 9.7 3.2 1.5 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3584 PF12128.3 gi|302348069|ref|YP_003815707.1| - 0.3 8.3 7.8 0.42 7.8 5.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF2968 PF11180.3 gi|302348069|ref|YP_003815707.1| - 0.31 10.3 6.3 0.5 9.7 4.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) DUF342 PF03961.8 gi|302348069|ref|YP_003815707.1| - 0.32 9.3 3.3 0.47 8.7 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) IncA PF04156.9 gi|302348069|ref|YP_003815707.1| - 0.48 9.9 7.8 0.81 9.2 5.4 1.3 1 0 0 1 1 1 0 IncA protein Mnd1 PF03962.10 gi|302348069|ref|YP_003815707.1| - 0.55 9.8 5.3 0.89 9.1 3.6 1.2 1 0 0 1 1 1 0 Mnd1 family APG6 PF04111.7 gi|302348069|ref|YP_003815707.1| - 1.7 7.6 4.8 2.8 6.8 3.3 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 ABC2_membrane_2 PF12679.2 gi|302348070|ref|YP_003815708.1| - 9.6e-20 70.5 27.0 2.4e-19 69.2 18.7 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|302348070|ref|YP_003815708.1| - 1.5e-11 43.9 30.7 2.7e-11 43.1 21.3 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|302348070|ref|YP_003815708.1| - 3.3e-05 23.1 21.4 0.00011 21.5 14.9 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|302348071|ref|YP_003815709.1| - 8.9e-29 100.5 0.0 1.2e-28 100.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302348071|ref|YP_003815709.1| - 4.9e-15 56.2 0.1 4.9e-09 36.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|302348071|ref|YP_003815709.1| - 6.1e-05 22.2 0.1 0.18 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|302348071|ref|YP_003815709.1| - 0.00031 20.0 0.2 0.35 10.0 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|302348071|ref|YP_003815709.1| - 0.00045 19.6 0.0 0.0008 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ArgK PF03308.11 gi|302348071|ref|YP_003815709.1| - 0.00069 18.4 0.1 0.001 17.9 0.1 1.2 1 0 0 1 1 1 1 ArgK protein AAA_23 PF13476.1 gi|302348071|ref|YP_003815709.1| - 0.001 19.4 0.0 0.0016 18.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|302348071|ref|YP_003815709.1| - 0.0021 17.5 0.0 0.021 14.2 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|302348071|ref|YP_003815709.1| - 0.012 14.7 0.1 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|302348071|ref|YP_003815709.1| - 0.029 13.7 0.1 0.1 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|302348071|ref|YP_003815709.1| - 0.029 13.9 0.0 0.069 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|302348071|ref|YP_003815709.1| - 0.032 14.2 0.0 0.073 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain DUF137 PF02006.11 gi|302348072|ref|YP_003815710.1| - 1.1e-72 243.2 1.2 1.3e-72 242.9 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 E3_binding PF02817.12 gi|302348073|ref|YP_003815711.1| - 0.049 13.2 0.0 0.099 12.3 0.0 1.4 1 0 0 1 1 1 0 e3 binding domain GHMP_kinases_N PF00288.21 gi|302348073|ref|YP_003815711.1| - 0.06 13.4 0.9 0.16 12.0 0.6 1.8 1 0 0 1 1 1 0 GHMP kinases N terminal domain Clp_N PF02861.15 gi|302348073|ref|YP_003815711.1| - 0.097 12.6 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Clp amino terminal domain NAD_synthase PF02540.12 gi|302348074|ref|YP_003815712.1| - 9.1e-72 240.8 0.0 1.1e-71 240.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|302348074|ref|YP_003815712.1| - 0.0081 14.7 0.1 0.32 9.4 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase HTH_23 PF13384.1 gi|302348074|ref|YP_003815712.1| - 0.009 15.6 0.0 0.17 11.5 0.0 2.9 3 1 1 4 4 4 1 Homeodomain-like domain ATP_bind_3 PF01171.15 gi|302348074|ref|YP_003815712.1| - 0.1 12.0 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 PP-loop family DFP PF04127.10 gi|302348075|ref|YP_003815713.1| - 4.1e-48 163.4 0.5 2.2e-46 157.8 0.1 2.1 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|302348075|ref|YP_003815713.1| - 1e-22 80.1 0.6 7.1e-22 77.4 0.2 2.4 2 0 0 2 2 2 1 Flavoprotein FlpD PF02662.11 gi|302348075|ref|YP_003815713.1| - 0.01 15.5 0.0 0.029 14.0 0.0 1.8 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit Acetyltransf_1 PF00583.19 gi|302348076|ref|YP_003815714.1| - 1.6e-21 76.1 0.2 3.1e-21 75.1 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|302348076|ref|YP_003815714.1| - 5.3e-13 49.1 0.8 9.1e-11 41.9 0.0 2.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|302348076|ref|YP_003815714.1| - 5.2e-12 45.7 0.1 2.3e-11 43.6 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|302348076|ref|YP_003815714.1| - 9.5e-11 41.7 0.0 1.8e-10 40.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|302348076|ref|YP_003815714.1| - 1.5e-09 38.0 0.0 4.1e-08 33.3 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|302348076|ref|YP_003815714.1| - 6e-09 35.5 0.0 1e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|302348076|ref|YP_003815714.1| - 2.4e-08 33.9 0.1 4.7e-06 26.4 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|302348076|ref|YP_003815714.1| - 5.1e-07 29.9 0.1 1.7e-06 28.2 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|302348076|ref|YP_003815714.1| - 0.044 13.6 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.1 gi|302348076|ref|YP_003815714.1| - 0.083 12.6 0.0 0.51 10.1 0.0 2.0 1 1 1 2 2 2 0 ESCO1/2 acetyl-transferase Baculo_LEF-11 PF06385.7 gi|302348076|ref|YP_003815714.1| - 0.13 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Baculovirus LEF-11 protein DUF3749 PF12568.3 gi|302348076|ref|YP_003815714.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GP41 PF00517.12 gi|302348077|ref|YP_003815715.1| - 0.0025 17.3 0.9 0.0034 16.9 0.5 1.3 1 1 0 1 1 1 1 Retroviral envelope protein CCDC155 PF14662.1 gi|302348077|ref|YP_003815715.1| - 0.11 12.1 2.6 0.22 11.0 0.1 2.0 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 STT3 PF02516.9 gi|302348078|ref|YP_003815716.1| - 3.3e-13 49.4 40.3 5.2e-13 48.7 27.9 1.3 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit eRF1_2 PF03464.10 gi|302348079|ref|YP_003815717.1| - 1.2e-37 129.2 0.1 2.3e-37 128.3 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|302348079|ref|YP_003815717.1| - 1.2e-19 70.6 0.0 3e-18 66.1 0.0 2.7 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|302348079|ref|YP_003815717.1| - 1.3e-17 63.5 0.0 2.4e-17 62.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 CTP_transf_2 PF01467.21 gi|302348080|ref|YP_003815718.1| - 4.6e-12 46.2 0.0 5.5e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase ATP-sulfurylase PF01747.12 gi|302348080|ref|YP_003815718.1| - 0.0025 17.1 0.1 0.36 10.1 0.0 2.5 3 0 0 3 3 3 2 ATP-sulfurylase Peptidase_M50 PF02163.17 gi|302348081|ref|YP_003815719.1| - 4.6e-16 58.3 12.3 3.2e-15 55.5 8.5 2.2 1 1 0 1 1 1 1 Peptidase family M50 BCLP PF12304.3 gi|302348081|ref|YP_003815719.1| - 0.06 12.7 6.5 0.025 14.0 2.6 1.7 1 1 0 1 1 1 0 Beta-casein like protein ACT_7 PF13840.1 gi|302348081|ref|YP_003815719.1| - 0.6 9.6 3.9 7.3 6.1 0.1 2.4 2 0 0 2 2 2 0 ACT domain DEAD_2 PF06733.10 gi|302348082|ref|YP_003815720.1| - 0.054 12.9 0.5 0.17 11.3 0.1 1.7 1 1 1 2 2 2 0 DEAD_2 DUF977 PF06163.6 gi|302348083|ref|YP_003815721.1| - 0.0054 16.4 0.0 0.0074 16.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) Stork_head PF10264.4 gi|302348083|ref|YP_003815721.1| - 0.051 13.7 0.0 0.92 9.7 0.0 2.1 2 0 0 2 2 2 0 Winged helix Storkhead-box1 domain HTH_27 PF13463.1 gi|302348083|ref|YP_003815721.1| - 0.07 13.4 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|302348083|ref|YP_003815721.1| - 0.13 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2122 PF09895.4 gi|302348084|ref|YP_003815722.1| - 4.8e-24 84.6 0.0 6.5e-24 84.1 0.0 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) tRNA-synt_2b PF00587.20 gi|302348085|ref|YP_003815723.1| - 7.2e-27 94.0 0.0 1.1e-26 93.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|302348085|ref|YP_003815723.1| - 0.014 15.3 0.0 0.071 13.0 0.0 2.2 2 1 0 2 2 2 0 Anticodon binding domain DUF106 PF01956.11 gi|302348086|ref|YP_003815724.1| - 0.1 12.0 0.3 0.18 11.3 0.2 1.5 1 0 0 1 1 1 0 Integral membrane protein DUF106 PRRSV_Env PF02340.10 gi|302348086|ref|YP_003815724.1| - 3.3 6.8 7.6 0.15 11.1 1.5 1.5 2 0 0 2 2 2 0 PRRSV putative envelope protein tRNA-synt_1 PF00133.17 gi|302348087|ref|YP_003815725.1| - 7.4e-118 394.1 0.0 6.5e-117 391.0 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|302348087|ref|YP_003815725.1| - 4.8e-27 94.6 0.3 8.3e-14 51.0 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|302348087|ref|YP_003815725.1| - 1.4e-22 80.0 0.1 2.7e-22 79.1 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|302348087|ref|YP_003815725.1| - 0.005 16.1 0.0 0.022 14.0 0.0 2.0 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 zinc_ribbon_2 PF13240.1 gi|302348087|ref|YP_003815725.1| - 0.008 15.6 5.9 0.071 12.6 0.7 3.0 3 0 0 3 3 3 1 zinc-ribbon domain DZR PF12773.2 gi|302348087|ref|YP_003815725.1| - 0.013 15.2 2.5 8.8 6.2 0.5 3.3 3 1 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|302348087|ref|YP_003815725.1| - 0.35 10.1 10.4 3.7 6.8 1.9 3.3 3 1 0 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|302348087|ref|YP_003815725.1| - 0.47 9.9 4.4 3 7.4 0.0 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|302348087|ref|YP_003815725.1| - 0.71 9.6 5.2 15 5.3 0.1 3.4 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Rubredoxin PF00301.15 gi|302348087|ref|YP_003815725.1| - 2.7 7.9 9.6 2.5 8.0 3.4 2.9 2 0 0 2 2 2 0 Rubredoxin Nudix_N_2 PF14803.1 gi|302348087|ref|YP_003815725.1| - 3 7.6 4.9 16 5.2 0.0 3.2 2 1 1 3 3 3 0 Nudix N-terminal zf-TFIIB PF13453.1 gi|302348087|ref|YP_003815725.1| - 4.8 6.4 7.1 41 3.4 0.0 3.6 3 1 1 4 4 4 0 Transcription factor zinc-finger Ldh_1_N PF00056.18 gi|302348088|ref|YP_003815726.1| - 1e-40 138.8 0.2 1.4e-40 138.3 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|302348088|ref|YP_003815726.1| - 2.3e-22 79.5 0.0 4.3e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|302348088|ref|YP_003815726.1| - 1.6e-05 24.3 0.0 4.1e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Pyr_redox_3 PF13738.1 gi|302348088|ref|YP_003815726.1| - 0.0024 17.9 0.1 0.0071 16.4 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FR47 PF08445.5 gi|302348088|ref|YP_003815726.1| - 0.036 13.8 0.0 0.088 12.5 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein S-methyl_trans PF02574.11 gi|302348088|ref|YP_003815726.1| - 0.15 11.2 0.0 0.92 8.7 0.0 1.9 2 0 0 2 2 2 0 Homocysteine S-methyltransferase HTH_3 PF01381.17 gi|302348090|ref|YP_003815728.1| - 5.3e-15 55.0 1.0 7.2e-15 54.5 0.7 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|302348090|ref|YP_003815728.1| - 8.5e-12 44.9 0.1 1.2e-11 44.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|302348090|ref|YP_003815728.1| - 8.9e-10 38.6 0.0 2.7e-09 37.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|302348090|ref|YP_003815728.1| - 3.2e-08 33.0 0.0 5.8e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|302348090|ref|YP_003815728.1| - 0.00015 21.4 0.0 0.00026 20.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Latrotoxin_C PF15658.1 gi|302348090|ref|YP_003815728.1| - 0.0076 16.0 0.0 0.014 15.2 0.0 1.4 1 1 0 1 1 1 1 Latrotoxin C-terminal domain Sigma70_r4 PF04545.11 gi|302348090|ref|YP_003815728.1| - 0.0098 15.1 0.0 0.018 14.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_26 PF13443.1 gi|302348090|ref|YP_003815728.1| - 0.013 15.6 0.1 0.019 15.1 0.1 1.2 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.1 gi|302348090|ref|YP_003815728.1| - 0.019 14.6 0.1 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Death PF00531.17 gi|302348090|ref|YP_003815728.1| - 0.065 13.0 0.0 0.099 12.4 0.0 1.2 1 0 0 1 1 1 0 Death domain SRP14 PF02290.10 gi|302348090|ref|YP_003815728.1| - 0.075 12.9 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Signal recognition particle 14kD protein HTH_11 PF08279.7 gi|302348090|ref|YP_003815728.1| - 0.14 11.8 0.1 0.59 9.8 0.0 2.0 2 0 0 2 2 2 0 HTH domain MMR_HSR1 PF01926.18 gi|302348091|ref|YP_003815729.1| - 2.6e-18 66.0 0.2 7.2e-18 64.6 0.1 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|302348091|ref|YP_003815729.1| - 4.7e-11 42.4 1.0 3.7e-10 39.5 0.7 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|302348091|ref|YP_003815729.1| - 6.4e-11 41.7 0.6 1.5e-10 40.5 0.4 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.5 gi|302348091|ref|YP_003815729.1| - 1e-08 34.6 0.5 1.7e-08 33.8 0.4 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit PduV-EutP PF10662.4 gi|302348091|ref|YP_003815729.1| - 1.4e-07 31.0 0.2 5e-07 29.3 0.2 1.9 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.16 gi|302348091|ref|YP_003815729.1| - 2.5e-07 30.1 0.1 4.7e-07 29.2 0.1 1.5 1 0 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|302348091|ref|YP_003815729.1| - 2.5e-06 28.0 0.1 5.7e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|302348091|ref|YP_003815729.1| - 1e-05 25.3 0.1 0.0074 16.1 0.0 2.6 1 1 1 2 2 2 2 Dynamin family Ras PF00071.17 gi|302348091|ref|YP_003815729.1| - 3e-05 23.4 0.1 5.4e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 Ras family Gtr1_RagA PF04670.7 gi|302348091|ref|YP_003815729.1| - 4.5e-05 22.6 0.1 9.1e-05 21.6 0.1 1.4 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region GTP-bdg_N PF13167.1 gi|302348091|ref|YP_003815729.1| - 0.01 15.9 0.0 0.052 13.6 0.0 2.2 1 1 0 1 1 1 0 GTP-binding GTPase N-terminal NOG1 PF06858.9 gi|302348091|ref|YP_003815729.1| - 0.037 13.8 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) ABC_tran PF00005.22 gi|302348091|ref|YP_003815729.1| - 0.041 14.1 0.2 0.11 12.8 0.1 1.9 1 1 1 2 2 2 0 ABC transporter AAA_23 PF13476.1 gi|302348091|ref|YP_003815729.1| - 0.79 10.0 3.4 4.1 7.6 0.3 2.5 2 1 1 3 3 3 0 AAA domain Trm56 PF01994.11 gi|302348092|ref|YP_003815730.1| - 2.7e-45 153.0 0.0 3.3e-45 152.7 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.12 gi|302348093|ref|YP_003815731.1| - 6.1e-13 48.1 1.3 8.4e-13 47.7 0.4 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.7 gi|302348093|ref|YP_003815731.1| - 0.0028 16.9 0.4 0.0063 15.8 0.3 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Prefoldin_2 PF01920.15 gi|302348093|ref|YP_003815731.1| - 0.01 15.5 0.6 0.037 13.7 0.0 2.0 2 0 0 2 2 2 0 Prefoldin subunit ABC_transp_aux PF09822.4 gi|302348093|ref|YP_003815731.1| - 0.1 12.0 0.1 0.35 10.2 0.0 1.8 2 0 0 2 2 2 0 ABC-type uncharacterized transport system MRC1 PF09444.5 gi|302348093|ref|YP_003815731.1| - 0.1 12.9 0.4 0.21 11.8 0.3 1.7 1 1 0 1 1 1 0 MRC1-like domain DNA_methylase PF00145.12 gi|302348094|ref|YP_003815732.1| - 1.8e-49 168.6 0.0 4.4e-34 118.0 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.5 gi|302348094|ref|YP_003815732.1| - 7.6e-06 25.5 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|302348094|ref|YP_003815732.1| - 0.072 13.1 0.0 0.16 12.0 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain AAA PF00004.24 gi|302348095|ref|YP_003815733.1| - 1.4e-43 148.2 0.2 3.4e-43 147.0 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|302348095|ref|YP_003815733.1| - 1.8e-07 31.2 0.0 5.2e-07 29.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|302348095|ref|YP_003815733.1| - 1.8e-06 28.0 0.0 3.1e-05 24.0 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|302348095|ref|YP_003815733.1| - 8.2e-06 25.5 0.2 5.6e-05 22.8 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|302348095|ref|YP_003815733.1| - 1.8e-05 23.9 0.0 4.1e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|302348095|ref|YP_003815733.1| - 6.7e-05 23.0 0.1 0.0022 18.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|302348095|ref|YP_003815733.1| - 0.00042 21.1 0.5 0.0013 19.5 0.1 2.2 2 1 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|302348095|ref|YP_003815733.1| - 0.0011 18.6 0.1 0.0028 17.3 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|302348095|ref|YP_003815733.1| - 0.0022 17.4 0.8 0.087 12.2 0.1 2.5 2 1 1 3 3 2 1 AAA domain Zeta_toxin PF06414.7 gi|302348095|ref|YP_003815733.1| - 0.0025 16.9 0.0 0.0062 15.6 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|302348095|ref|YP_003815733.1| - 0.0029 17.5 0.0 0.0059 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|302348095|ref|YP_003815733.1| - 0.0033 16.3 0.0 0.0063 15.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|302348095|ref|YP_003815733.1| - 0.0038 16.6 0.0 0.007 15.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|302348095|ref|YP_003815733.1| - 0.004 17.2 0.0 0.0079 16.3 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_18 PF13238.1 gi|302348095|ref|YP_003815733.1| - 0.0043 17.3 0.0 0.013 15.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|302348095|ref|YP_003815733.1| - 0.0046 16.8 0.0 0.027 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|302348095|ref|YP_003815733.1| - 0.0064 15.6 0.0 0.015 14.4 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.8 gi|302348095|ref|YP_003815733.1| - 0.0068 15.1 0.0 0.014 14.1 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_28 PF13521.1 gi|302348095|ref|YP_003815733.1| - 0.0075 16.2 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|302348095|ref|YP_003815733.1| - 0.0086 15.6 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Torsin PF06309.6 gi|302348095|ref|YP_003815733.1| - 0.012 15.4 0.1 0.097 12.5 0.0 2.3 3 0 0 3 3 2 0 Torsin ABC_tran PF00005.22 gi|302348095|ref|YP_003815733.1| - 0.014 15.7 0.0 0.25 11.6 0.0 2.5 2 1 0 2 2 2 0 ABC transporter AAA_24 PF13479.1 gi|302348095|ref|YP_003815733.1| - 0.02 14.4 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|302348095|ref|YP_003815733.1| - 0.048 13.1 0.0 0.2 11.1 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|302348095|ref|YP_003815733.1| - 0.056 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|302348095|ref|YP_003815733.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|302348095|ref|YP_003815733.1| - 0.15 11.0 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|302348095|ref|YP_003815733.1| - 0.51 10.0 3.3 5.6 6.5 0.0 3.1 3 1 1 4 4 3 0 Archaeal ATPase MarR_2 PF12802.2 gi|302348096|ref|YP_003815734.1| - 0.0044 16.6 0.0 0.053 13.1 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|302348096|ref|YP_003815734.1| - 0.0081 15.9 0.1 0.031 14.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_29 PF13551.1 gi|302348096|ref|YP_003815734.1| - 0.0085 16.2 0.1 3.5 7.8 0.0 2.8 2 1 0 2 2 2 2 Winged helix-turn helix Rrf2 PF02082.15 gi|302348096|ref|YP_003815734.1| - 0.0095 16.0 0.0 5.3 7.2 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator TrmB PF01978.14 gi|302348096|ref|YP_003815734.1| - 0.023 14.4 0.5 0.52 10.0 0.0 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.6 gi|302348096|ref|YP_003815734.1| - 0.077 13.4 0.2 0.3 11.5 0.1 1.9 1 1 0 1 1 1 0 Replication protein A C terminal HTH_5 PF01022.15 gi|302348096|ref|YP_003815734.1| - 0.082 12.5 0.0 0.22 11.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HrcA_DNA-bdg PF03444.10 gi|302348096|ref|YP_003815734.1| - 0.09 12.2 0.0 0.67 9.4 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding EHN PF06441.7 gi|302348096|ref|YP_003815734.1| - 0.12 12.2 1.8 0.26 11.2 0.1 2.2 1 1 1 2 2 2 0 Epoxide hydrolase N terminus HTH_45 PF14947.1 gi|302348097|ref|YP_003815735.1| - 0.00076 19.2 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|302348097|ref|YP_003815735.1| - 0.0014 18.2 0.4 0.0052 16.3 0.1 2.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|302348097|ref|YP_003815735.1| - 0.0017 17.9 0.3 0.0049 16.5 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|302348097|ref|YP_003815735.1| - 0.0019 17.5 1.0 0.0087 15.4 0.2 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|302348097|ref|YP_003815735.1| - 0.016 15.2 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.15 gi|302348097|ref|YP_003815735.1| - 0.028 14.0 1.3 0.2 11.3 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family PaaX PF07848.7 gi|302348097|ref|YP_003815735.1| - 0.072 13.1 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 PaaX-like protein MarR PF01047.17 gi|302348097|ref|YP_003815735.1| - 0.094 12.4 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|302348097|ref|YP_003815735.1| - 0.14 11.8 0.1 0.33 10.6 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB T2SE PF00437.15 gi|302348099|ref|YP_003815737.1| - 5e-50 169.9 0.0 7.4e-50 169.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|302348099|ref|YP_003815737.1| - 0.0001 21.7 0.0 0.00024 20.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|302348099|ref|YP_003815737.1| - 0.00017 21.9 0.0 0.0004 20.7 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.1 gi|302348099|ref|YP_003815737.1| - 0.00019 21.8 0.0 0.00048 20.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain Parvo_NS1 PF01057.12 gi|302348099|ref|YP_003815737.1| - 0.00039 19.3 0.0 0.00065 18.6 0.0 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_33 PF13671.1 gi|302348099|ref|YP_003815737.1| - 0.00046 20.0 0.0 0.0014 18.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|302348099|ref|YP_003815737.1| - 0.00051 20.1 0.1 0.0029 17.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|302348099|ref|YP_003815737.1| - 0.00072 19.2 0.2 0.015 15.0 0.0 2.7 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|302348099|ref|YP_003815737.1| - 0.0029 17.6 0.0 0.0081 16.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|302348099|ref|YP_003815737.1| - 0.0045 16.9 0.0 0.01 15.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|302348099|ref|YP_003815737.1| - 0.0085 15.2 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI GCS PF03074.11 gi|302348099|ref|YP_003815737.1| - 0.01 14.8 0.0 0.017 14.1 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase AAA_30 PF13604.1 gi|302348099|ref|YP_003815737.1| - 0.013 15.1 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|302348099|ref|YP_003815737.1| - 0.015 15.2 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|302348099|ref|YP_003815737.1| - 0.017 14.8 0.0 0.047 13.3 0.0 1.7 1 0 0 1 1 1 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|302348099|ref|YP_003815737.1| - 0.021 14.8 0.0 0.056 13.4 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.14 gi|302348099|ref|YP_003815737.1| - 0.025 14.0 0.1 0.05 13.0 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|302348099|ref|YP_003815737.1| - 0.028 13.5 0.0 0.053 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|302348099|ref|YP_003815737.1| - 0.035 14.3 0.0 0.089 12.9 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|302348099|ref|YP_003815737.1| - 0.037 14.8 0.1 0.13 13.0 0.0 2.0 2 0 0 2 2 1 0 AAA domain DUF927 PF06048.6 gi|302348099|ref|YP_003815737.1| - 0.037 13.2 0.0 0.068 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF927) IstB_IS21 PF01695.12 gi|302348099|ref|YP_003815737.1| - 0.044 13.1 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|302348099|ref|YP_003815737.1| - 0.051 13.8 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|302348099|ref|YP_003815737.1| - 0.051 13.3 0.0 0.2 11.4 0.0 1.9 2 0 0 2 2 1 0 Part of AAA domain AAA_5 PF07728.9 gi|302348099|ref|YP_003815737.1| - 0.07 12.8 0.1 0.49 10.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|302348099|ref|YP_003815737.1| - 0.073 12.4 0.1 0.19 11.1 0.0 1.7 2 0 0 2 2 1 0 AAA-like domain DEAD PF00270.24 gi|302348099|ref|YP_003815737.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_24 PF13479.1 gi|302348099|ref|YP_003815737.1| - 0.12 11.9 0.2 0.24 10.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|302348099|ref|YP_003815737.1| - 0.15 11.7 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ATP_bind_1 PF03029.12 gi|302348099|ref|YP_003815737.1| - 0.16 11.4 0.0 0.36 10.3 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|302348099|ref|YP_003815737.1| - 0.17 12.0 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase T2SF PF00482.18 gi|302348100|ref|YP_003815738.1| - 0.0021 17.9 1.9 0.0021 17.9 1.3 2.9 3 1 1 4 4 4 1 Type II secretion system (T2SS), protein F Caveolin PF01146.12 gi|302348100|ref|YP_003815738.1| - 0.054 13.0 3.1 0.097 12.2 2.2 1.5 1 0 0 1 1 1 0 Caveolin T2SF PF00482.18 gi|302348101|ref|YP_003815739.1| - 1.1e-07 31.8 1.2 1.1e-07 31.8 0.8 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF2341 PF10102.4 gi|302348103|ref|YP_003815741.1| - 0.027 14.6 0.8 0.07 13.2 0.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF2341) 2-ph_phosp PF04029.9 gi|302348104|ref|YP_003815742.1| - 0.046 12.6 0.1 0.057 12.3 0.1 1.1 1 0 0 1 1 1 0 2-phosphosulpholactate phosphatase OTCace PF00185.19 gi|302348105|ref|YP_003815743.1| - 7.6e-54 181.8 0.1 1.1e-53 181.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|302348105|ref|YP_003815743.1| - 7.6e-47 158.5 0.0 1.1e-46 158.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TGT_C2 PF14810.1 gi|302348106|ref|YP_003815744.1| - 6.6e-13 48.3 0.0 1e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|302348106|ref|YP_003815744.1| - 5.8e-05 22.7 0.1 9.7e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 PUA domain PAC2 PF09754.4 gi|302348107|ref|YP_003815745.1| - 2.7e-27 96.0 0.0 3.3e-27 95.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT PF01702.13 gi|302348108|ref|YP_003815746.1| - 1.3e-48 165.4 0.0 1.6e-48 165.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Lsm_C PF14894.1 gi|302348109|ref|YP_003815747.1| - 1.1e-26 92.0 0.3 2.3e-26 91.0 0.2 1.5 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.17 gi|302348109|ref|YP_003815747.1| - 4.5e-06 26.1 0.0 6.2e-06 25.6 0.0 1.5 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|302348109|ref|YP_003815747.1| - 5.6e-05 22.9 0.0 7.6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain Nse4-Nse3_bdg PF15412.1 gi|302348109|ref|YP_003815747.1| - 0.11 12.4 0.0 0.29 10.9 0.0 1.7 1 0 0 1 1 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE 4HBT_2 PF13279.1 gi|302348110|ref|YP_003815748.1| - 4e-14 53.1 0.0 4.7e-14 52.8 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|302348110|ref|YP_003815748.1| - 6e-09 35.8 0.0 8.7e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily AA_kinase PF00696.23 gi|302348111|ref|YP_003815749.1| - 2.7e-31 108.9 0.0 3e-31 108.7 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family SIS_2 PF13580.1 gi|302348111|ref|YP_003815749.1| - 0.0076 15.9 0.1 0.02 14.6 0.0 1.7 2 0 0 2 2 2 1 SIS domain Transketolase_N PF00456.16 gi|302348111|ref|YP_003815749.1| - 0.05 12.4 0.0 0.13 11.0 0.0 1.5 1 1 1 2 2 2 0 Transketolase, thiamine diphosphate binding domain Pribosyltran PF00156.22 gi|302348112|ref|YP_003815750.1| - 4e-22 78.2 0.0 6.3e-22 77.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain ThiS PF02597.15 gi|302348112|ref|YP_003815750.1| - 0.0015 18.8 0.0 0.0028 18.0 0.0 1.4 1 0 0 1 1 1 1 ThiS family AMP-binding PF00501.23 gi|302348112|ref|YP_003815750.1| - 0.0066 14.8 0.0 0.01 14.2 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Ribosomal_S17e PF00833.13 gi|302348113|ref|YP_003815751.1| - 3e-21 75.4 0.9 3.4e-21 75.2 0.6 1.0 1 0 0 1 1 1 1 Ribosomal S17 Cpn60_TCP1 PF00118.19 gi|302348114|ref|YP_003815752.1| - 6.8e-175 582.3 7.0 8.2e-175 582.0 4.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Fe-ADH_2 PF13685.1 gi|302348115|ref|YP_003815753.1| - 8.7e-65 218.4 0.0 1.1e-64 218.1 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|302348115|ref|YP_003815753.1| - 9.1e-30 103.5 0.6 4.6e-29 101.1 0.4 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|302348115|ref|YP_003815753.1| - 6.7e-13 48.1 0.0 1.5e-06 27.3 0.0 3.0 2 1 0 2 2 2 2 3-dehydroquinate synthase Peripla_BP_6 PF13458.1 gi|302348115|ref|YP_003815753.1| - 0.028 13.7 0.1 0.071 12.4 0.0 1.7 2 0 0 2 2 2 0 Periplasmic binding protein PASTA PF03793.14 gi|302348115|ref|YP_003815753.1| - 0.13 11.9 0.0 6 6.5 0.0 2.8 2 0 0 2 2 2 0 PASTA domain Proteasome PF00227.21 gi|302348116|ref|YP_003815754.1| - 5e-53 179.2 0.6 5.8e-53 179.0 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|302348117|ref|YP_003815755.1| - 2.9e-34 117.7 0.0 8.9e-34 116.1 0.0 1.9 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|302348117|ref|YP_003815755.1| - 6.8e-19 68.2 0.4 2e-18 66.7 0.2 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|302348117|ref|YP_003815755.1| - 3.5e-14 52.3 0.0 2.8e-13 49.4 0.0 2.5 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|302348117|ref|YP_003815755.1| - 1.5e-11 44.2 0.0 3.3e-11 43.0 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|302348117|ref|YP_003815755.1| - 1.6e-05 24.7 0.1 6.3e-05 22.7 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|302348117|ref|YP_003815755.1| - 0.077 12.6 0.5 0.32 10.6 0.0 2.2 2 0 0 2 2 2 0 KH domain DUF650 PF04894.7 gi|302348118|ref|YP_003815756.1| - 9.6e-94 313.8 0.0 1.3e-93 313.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|302348118|ref|YP_003815756.1| - 1.3e-30 105.2 0.0 2.3e-30 104.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) FUR PF01475.14 gi|302348119|ref|YP_003815757.1| - 1.5e-16 60.3 0.0 1.9e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Phage_cap_E PF03864.10 gi|302348119|ref|YP_003815757.1| - 0.04 12.8 0.0 0.045 12.6 0.0 1.1 1 0 0 1 1 1 0 Phage major capsid protein E Serpin PF00079.15 gi|302348119|ref|YP_003815757.1| - 0.076 12.1 0.0 0.076 12.1 0.0 1.2 1 0 0 1 1 1 0 Serpin (serine protease inhibitor) HTH_20 PF12840.2 gi|302348119|ref|YP_003815757.1| - 0.15 11.9 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain 4HBT PF03061.17 gi|302348120|ref|YP_003815758.1| - 1e-18 67.2 0.1 1.7e-12 47.2 0.1 2.4 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.1 gi|302348120|ref|YP_003815758.1| - 0.011 16.1 0.0 0.047 14.1 0.0 1.8 2 0 0 2 2 2 0 Thioesterase-like superfamily Thiolase_N PF00108.18 gi|302348121|ref|YP_003815759.1| - 2.3e-74 249.6 0.0 3e-74 249.3 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|302348121|ref|YP_003815759.1| - 4.3e-40 135.9 0.1 3.5e-38 129.8 0.0 2.3 2 0 0 2 2 2 2 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|302348121|ref|YP_003815759.1| - 0.00038 20.0 5.3 0.0022 17.5 2.4 2.5 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|302348121|ref|YP_003815759.1| - 0.057 13.0 2.6 0.14 11.8 0.8 2.1 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Meth_synt_1 PF08267.7 gi|302348122|ref|YP_003815760.1| - 2.8e-36 125.3 0.0 5.9e-31 107.8 0.0 2.3 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|302348122|ref|YP_003815760.1| - 3.8e-21 75.3 0.0 4.8e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain LpxD PF04613.9 gi|302348122|ref|YP_003815760.1| - 0.034 13.6 0.3 0.071 12.6 0.2 1.5 1 1 0 1 1 1 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Peptidase_U35 PF04586.12 gi|302348122|ref|YP_003815760.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Caudovirus prohead protease Meth_synt_2 PF01717.13 gi|302348123|ref|YP_003815761.1| - 2.4e-87 292.9 0.0 2.7e-87 292.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|302348123|ref|YP_003815761.1| - 4.5e-24 85.2 0.0 1.1e-18 67.5 0.0 2.0 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|302348123|ref|YP_003815761.1| - 0.00017 20.6 0.0 0.00056 18.9 0.0 1.7 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) SHOCT PF09851.4 gi|302348123|ref|YP_003815761.1| - 0.00018 20.8 0.7 0.00047 19.5 0.5 1.6 1 0 0 1 1 1 1 Short C-terminal domain AIRS_C PF02769.17 gi|302348124|ref|YP_003815762.1| - 2e-19 70.1 0.1 3.4e-19 69.3 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|302348124|ref|YP_003815762.1| - 2e-10 40.7 0.0 5.7e-10 39.3 0.0 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AAA_10 PF12846.2 gi|302348125|ref|YP_003815763.1| - 5.8e-24 85.0 0.0 1.3e-23 83.8 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain DUF853 PF05872.7 gi|302348125|ref|YP_003815763.1| - 4.4e-14 51.7 0.1 6e-06 24.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.12 gi|302348125|ref|YP_003815763.1| - 3.3e-10 40.1 0.0 7.3e-10 39.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|302348125|ref|YP_003815763.1| - 2.4e-07 29.7 0.0 6.5e-05 21.7 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|302348125|ref|YP_003815763.1| - 7.9e-06 26.0 0.1 0.55 10.4 0.0 3.5 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|302348125|ref|YP_003815763.1| - 8.9e-05 22.0 2.2 0.0004 19.9 0.4 2.6 2 1 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|302348125|ref|YP_003815763.1| - 0.00027 21.0 1.3 0.045 13.8 0.1 2.8 3 0 0 3 3 2 1 AAA domain Zot PF05707.7 gi|302348125|ref|YP_003815763.1| - 0.0046 16.4 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) T2SE PF00437.15 gi|302348125|ref|YP_003815763.1| - 0.0056 15.6 0.1 0.013 14.4 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|302348125|ref|YP_003815763.1| - 0.0095 15.9 0.6 5.2 7.0 0.0 2.8 3 1 0 3 3 3 2 AAA ATPase domain ABC_tran PF00005.22 gi|302348125|ref|YP_003815763.1| - 0.061 13.6 0.8 0.12 12.6 0.0 1.9 2 0 0 2 2 1 0 ABC transporter NB-ARC PF00931.17 gi|302348125|ref|YP_003815763.1| - 0.065 12.0 0.1 0.11 11.3 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.1 gi|302348125|ref|YP_003815763.1| - 0.083 13.2 0.4 0.17 12.2 0.3 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|302348125|ref|YP_003815763.1| - 0.1 12.2 0.2 0.24 11.0 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Oxidored_molyb PF00174.14 gi|302348126|ref|YP_003815764.1| - 3.5e-26 91.6 0.0 5.1e-26 91.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Methyltransf_31 PF13847.1 gi|302348127|ref|YP_003815765.1| - 3.2e-18 65.7 0.0 3.7e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|302348127|ref|YP_003815765.1| - 4.2e-16 59.2 0.0 7.2e-16 58.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|302348127|ref|YP_003815765.1| - 1.4e-15 57.8 0.0 2e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|302348127|ref|YP_003815765.1| - 1.3e-13 50.6 0.0 1.6e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|302348127|ref|YP_003815765.1| - 5.1e-13 49.3 0.0 1.1e-12 48.2 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|302348127|ref|YP_003815765.1| - 5.7e-13 49.1 0.0 7.8e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|302348127|ref|YP_003815765.1| - 1.3e-12 47.4 0.0 1.7e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|302348127|ref|YP_003815765.1| - 3e-12 46.6 0.1 4.9e-12 45.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|302348127|ref|YP_003815765.1| - 4.7e-11 42.6 0.0 5.7e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|302348127|ref|YP_003815765.1| - 8.2e-09 35.3 0.0 1.1e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|302348127|ref|YP_003815765.1| - 2.3e-08 33.5 0.1 3.2e-08 33.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|302348127|ref|YP_003815765.1| - 5.5e-08 32.1 0.0 6.9e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|302348127|ref|YP_003815765.1| - 1.2e-07 31.5 0.2 3.2e-07 30.1 0.0 1.8 2 1 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|302348127|ref|YP_003815765.1| - 5.2e-07 28.9 0.0 9.6e-07 28.0 0.0 1.4 2 0 0 2 2 2 1 Putative methyltransferase FtsJ PF01728.14 gi|302348127|ref|YP_003815765.1| - 5.8e-07 29.6 0.0 1.2e-06 28.6 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_2 PF00891.13 gi|302348127|ref|YP_003815765.1| - 3.8e-06 26.2 0.2 5.2e-06 25.8 0.1 1.1 1 0 0 1 1 1 1 O-methyltransferase DUF938 PF06080.7 gi|302348127|ref|YP_003815765.1| - 1.2e-05 24.9 0.0 2.1e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF938) Nol1_Nop2_Fmu PF01189.12 gi|302348127|ref|YP_003815765.1| - 9.7e-05 21.8 0.0 0.00041 19.8 0.0 1.8 2 0 0 2 2 2 1 NOL1/NOP2/sun family GCD14 PF08704.5 gi|302348127|ref|YP_003815765.1| - 0.00012 21.7 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit GidB PF02527.10 gi|302348127|ref|YP_003815765.1| - 0.00015 20.9 0.0 0.00019 20.6 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.15 gi|302348127|ref|YP_003815765.1| - 0.00022 20.4 0.0 0.00029 19.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.12 gi|302348127|ref|YP_003815765.1| - 0.00037 19.4 0.0 0.00044 19.2 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin ADH_zinc_N PF00107.21 gi|302348127|ref|YP_003815765.1| - 0.0013 18.3 0.1 0.0058 16.1 0.1 1.9 1 1 0 1 1 1 1 Zinc-binding dehydrogenase FmrO PF07091.6 gi|302348127|ref|YP_003815765.1| - 0.006 15.6 0.0 0.0086 15.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_8 PF05148.10 gi|302348127|ref|YP_003815765.1| - 0.028 14.0 0.0 0.15 11.6 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase DOT1 PF08123.8 gi|302348127|ref|YP_003815765.1| - 0.033 13.5 0.0 0.062 12.6 0.0 1.4 2 0 0 2 2 2 0 Histone methylation protein DOT1 TehB PF03848.9 gi|302348127|ref|YP_003815765.1| - 0.036 13.2 0.0 0.042 13.0 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB tRNA_U5-meth_tr PF05958.6 gi|302348127|ref|YP_003815765.1| - 0.15 10.6 0.0 0.22 10.1 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF1275 PF06912.6 gi|302348128|ref|YP_003815766.1| - 0.018 14.2 1.7 0.018 14.2 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1275) DUF1454 PF07305.7 gi|302348129|ref|YP_003815767.1| - 0.051 12.6 0.0 0.051 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1454) AA_permease PF00324.16 gi|302348130|ref|YP_003815768.1| - 8.2e-08 31.0 49.9 1.5e-07 30.1 34.6 1.4 1 1 0 1 1 1 1 Amino acid permease FMN_dh PF01070.13 gi|302348131|ref|YP_003815769.1| - 1.3e-27 96.5 0.1 5e-19 68.3 0.0 2.2 1 1 1 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|302348131|ref|YP_003815769.1| - 2.5e-05 23.3 0.1 5.6e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase IMPDH PF00478.20 gi|302348131|ref|YP_003815769.1| - 0.0022 16.9 1.8 0.0022 16.9 1.2 2.2 3 1 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain polyprenyl_synt PF00348.12 gi|302348132|ref|YP_003815770.1| - 9.3e-67 224.5 0.1 1.2e-66 224.2 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Ligase_CoA PF00549.14 gi|302348132|ref|YP_003815770.1| - 0.08 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 CoA-ligase tRNA-synt_1c PF00749.16 gi|302348133|ref|YP_003815771.1| - 1e-67 228.0 0.0 1.9e-67 227.1 0.0 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|302348133|ref|YP_003815771.1| - 2e-16 60.1 0.0 4.6e-16 58.9 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF4455 PF14643.1 gi|302348133|ref|YP_003815771.1| - 0.093 11.3 0.1 0.13 10.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) Glyco_hydro_15 PF00723.16 gi|302348135|ref|YP_003815773.1| - 1.7e-22 79.6 0.6 2.2e-18 66.0 0.9 2.3 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|302348135|ref|YP_003815773.1| - 4.4e-07 28.9 0.4 9.9e-07 27.7 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF608 GCHY-1 PF02649.9 gi|302348136|ref|YP_003815774.1| - 2.2e-40 138.6 0.0 2.5e-40 138.4 0.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 B5 PF03484.10 gi|302348137|ref|YP_003815775.1| - 1.6e-20 72.6 0.2 3.3e-17 62.0 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|302348137|ref|YP_003815775.1| - 1.3e-07 31.2 0.0 2.4e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|302348138|ref|YP_003815776.1| - 8.3e-80 267.5 0.0 1e-79 267.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|302348138|ref|YP_003815776.1| - 0.00045 19.1 0.4 0.2 10.4 0.0 3.1 3 0 0 3 3 3 3 tRNA synthetases class II (D, K and N) DUF2797 PF10977.3 gi|302348139|ref|YP_003815777.1| - 2.1e-07 30.8 0.0 2.6e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) PNP_UDP_1 PF01048.15 gi|302348140|ref|YP_003815778.1| - 3.3e-40 137.5 0.1 3.9e-40 137.2 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily tRNA-synt_1d PF00750.14 gi|302348141|ref|YP_003815779.1| - 2.4e-51 174.6 0.0 4.1e-30 104.8 0.0 2.2 1 1 1 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|302348141|ref|YP_003815779.1| - 1.6e-21 76.4 0.7 3.1e-20 72.3 0.0 3.1 4 1 0 4 4 4 1 DALR anticodon binding domain tRNA-synt_1g PF09334.6 gi|302348141|ref|YP_003815779.1| - 0.03 12.9 0.0 0.13 10.8 0.0 2.0 3 0 0 3 3 3 0 tRNA synthetases class I (M) Arg_tRNA_synt_N PF03485.11 gi|302348141|ref|YP_003815779.1| - 0.093 13.2 0.0 0.37 11.3 0.0 2.1 1 0 0 1 1 1 0 Arginyl tRNA synthetase N terminal domain VWA_CoxE PF05762.9 gi|302348142|ref|YP_003815780.1| - 2.2e-19 69.5 2.5 4.9e-19 68.3 1.7 1.6 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein Reductase_C PF14759.1 gi|302348142|ref|YP_003815780.1| - 0.12 12.6 0.1 0.57 10.5 0.1 2.2 1 0 0 1 1 1 0 Reductase C-terminal AAA_5 PF07728.9 gi|302348143|ref|YP_003815781.1| - 7.4e-17 61.3 0.0 1.2e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|302348143|ref|YP_003815781.1| - 0.00097 18.7 0.0 0.013 15.1 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|302348143|ref|YP_003815781.1| - 0.001 19.3 0.0 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|302348143|ref|YP_003815781.1| - 0.0012 19.0 0.1 0.01 16.0 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|302348143|ref|YP_003815781.1| - 0.0062 16.2 0.0 0.02 14.6 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|302348143|ref|YP_003815781.1| - 0.011 15.2 0.0 2.6 7.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_2 PF07724.9 gi|302348143|ref|YP_003815781.1| - 0.015 15.2 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.1 gi|302348143|ref|YP_003815781.1| - 0.022 14.8 0.0 0.18 11.8 0.0 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_16 PF13191.1 gi|302348143|ref|YP_003815781.1| - 0.025 14.5 0.0 0.078 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|302348143|ref|YP_003815781.1| - 0.026 15.3 0.1 0.093 13.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|302348143|ref|YP_003815781.1| - 0.048 12.8 0.0 0.95 8.5 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|302348143|ref|YP_003815781.1| - 0.052 13.1 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|302348143|ref|YP_003815781.1| - 0.1 11.2 0.0 0.18 10.4 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Abi_C PF14355.1 gi|302348143|ref|YP_003815781.1| - 0.12 12.3 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 Abortive infection C-terminus Rhabdo_NV PF02484.10 gi|302348143|ref|YP_003815781.1| - 0.14 12.0 0.1 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 Rhabdovirus Non-virion protein AAA_22 PF13401.1 gi|302348143|ref|YP_003815781.1| - 0.16 12.1 0.0 3.3 7.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain PDDEXK_1 PF12705.2 gi|302348144|ref|YP_003815782.1| - 6e-11 42.2 0.0 7.5e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|302348144|ref|YP_003815782.1| - 8.1e-07 29.0 0.0 1e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 tRNA-synt_1 PF00133.17 gi|302348145|ref|YP_003815783.1| - 5.2e-184 612.6 0.0 6.6e-184 612.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|302348145|ref|YP_003815783.1| - 5.7e-32 110.5 0.3 1.2e-31 109.5 0.2 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|302348145|ref|YP_003815783.1| - 1.6e-25 89.5 0.4 8e-08 31.3 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|302348145|ref|YP_003815783.1| - 1.5e-07 30.8 0.0 2.2e-05 23.7 0.0 2.6 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|302348145|ref|YP_003815783.1| - 5.7e-06 25.2 0.0 1.3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|302348145|ref|YP_003815783.1| - 0.0073 15.6 0.0 0.017 14.4 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 zf-TFIIB PF13453.1 gi|302348145|ref|YP_003815783.1| - 0.099 11.8 2.2 12 5.1 0.1 3.4 3 0 0 3 3 3 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|302348145|ref|YP_003815783.1| - 0.12 12.3 0.9 3.5 7.6 0.0 3.0 3 0 0 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|302348145|ref|YP_003815783.1| - 0.2 10.8 3.1 11 5.3 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|302348145|ref|YP_003815783.1| - 0.42 10.6 2.1 4.7 7.2 0.1 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-FPG_IleRS PF06827.9 gi|302348145|ref|YP_003815783.1| - 9.5 5.9 9.5 2 8.1 0.5 3.1 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Radical_SAM PF04055.16 gi|302348147|ref|YP_003815785.1| - 2.4e-23 83.1 0.0 3.5e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|302348147|ref|YP_003815785.1| - 0.0051 16.8 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain ATP_bind_3 PF01171.15 gi|302348148|ref|YP_003815786.1| - 4.5e-10 39.3 0.0 7.1e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.12 gi|302348148|ref|YP_003815786.1| - 0.0031 16.4 0.0 0.0044 15.9 0.0 1.1 1 0 0 1 1 1 1 NAD synthase OrfB_Zn_ribbon PF07282.6 gi|302348148|ref|YP_003815786.1| - 0.0031 17.1 5.1 0.19 11.3 0.0 3.1 3 0 0 3 3 3 2 Putative transposase DNA-binding domain DZR PF12773.2 gi|302348148|ref|YP_003815786.1| - 0.034 13.9 7.7 0.34 10.7 0.2 3.1 3 0 0 3 3 3 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|302348148|ref|YP_003815786.1| - 1.5 8.6 12.5 0.48 10.2 1.5 3.2 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger NMD3 PF04981.8 gi|302348148|ref|YP_003815786.1| - 2.1 7.3 10.9 1.9 7.5 0.4 3.1 3 0 0 3 3 3 0 NMD3 family NUDIX PF00293.23 gi|302348149|ref|YP_003815787.1| - 5.5e-18 64.9 0.1 6.9e-18 64.5 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain DUF3536 PF12055.3 gi|302348150|ref|YP_003815788.1| - 1.4e-63 214.7 0.0 2.1e-63 214.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3536) Glyco_hydro_57 PF03065.10 gi|302348150|ref|YP_003815788.1| - 2.3e-21 76.1 0.0 7.6e-21 74.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Abi PF02517.11 gi|302348151|ref|YP_003815789.1| - 1.1e-11 44.7 4.7 1.1e-11 44.7 3.2 2.5 1 1 1 2 2 2 1 CAAX protease self-immunity GDC-P PF02347.11 gi|302348152|ref|YP_003815790.1| - 1.2e-07 30.7 0.0 2.1e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|302348152|ref|YP_003815790.1| - 3.5e-05 22.7 0.0 6e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|302348152|ref|YP_003815790.1| - 0.044 12.7 0.0 0.094 11.6 0.0 1.5 2 0 0 2 2 2 0 Aminotransferase class I and II GDC-P PF02347.11 gi|302348153|ref|YP_003815791.1| - 2.4e-105 352.7 0.0 3e-105 352.4 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Glyco_hydro_15 PF00723.16 gi|302348154|ref|YP_003815792.1| - 3.5e-07 29.1 0.2 0.00011 20.9 0.1 2.4 3 0 0 3 3 3 2 Glycosyl hydrolases family 15 TrmB PF01978.14 gi|302348155|ref|YP_003815793.1| - 0.0047 16.6 0.0 0.0075 15.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|302348155|ref|YP_003815793.1| - 0.13 11.9 0.0 0.34 10.6 0.0 1.6 2 0 0 2 2 2 0 MarR family MarR PF01047.17 gi|302348158|ref|YP_003815796.1| - 1e-06 28.3 0.0 1.5e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|302348158|ref|YP_003815796.1| - 2.6e-06 26.6 0.0 3.8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|302348158|ref|YP_003815796.1| - 5.5e-06 25.9 0.0 7.6e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|302348158|ref|YP_003815796.1| - 1.3e-05 24.9 0.0 1.9e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|302348158|ref|YP_003815796.1| - 4.1e-05 23.2 0.1 6.6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|302348158|ref|YP_003815796.1| - 0.0013 18.2 0.0 0.0017 17.8 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain HTH_36 PF13730.1 gi|302348158|ref|YP_003815796.1| - 0.0017 18.4 0.0 0.0029 17.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|302348158|ref|YP_003815796.1| - 0.002 17.7 0.0 0.0032 17.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_10 PF04967.7 gi|302348158|ref|YP_003815796.1| - 0.0024 17.4 0.0 0.0039 16.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Crp_2 PF13545.1 gi|302348158|ref|YP_003815796.1| - 0.0029 17.3 0.0 0.0041 16.8 0.0 1.3 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|302348158|ref|YP_003815796.1| - 0.0033 17.0 0.0 0.0054 16.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|302348158|ref|YP_003815796.1| - 0.0034 16.8 0.0 0.0051 16.3 0.0 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|302348158|ref|YP_003815796.1| - 0.0066 15.6 0.0 0.015 14.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.1 gi|302348158|ref|YP_003815796.1| - 0.01 16.1 0.0 0.013 15.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|302348158|ref|YP_003815796.1| - 0.01 15.9 0.0 0.015 15.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.16 gi|302348158|ref|YP_003815796.1| - 0.011 15.1 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|302348158|ref|YP_003815796.1| - 0.012 15.4 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain RepL PF05732.6 gi|302348158|ref|YP_003815796.1| - 0.018 14.2 0.0 0.02 14.1 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_IclR PF09339.5 gi|302348158|ref|YP_003815796.1| - 0.018 14.6 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|302348158|ref|YP_003815796.1| - 0.038 13.6 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain TFIIE_alpha PF02002.12 gi|302348158|ref|YP_003815796.1| - 0.088 12.3 0.0 0.098 12.1 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Aminotran_3 PF00202.16 gi|302348159|ref|YP_003815797.1| - 6.7e-114 380.2 0.0 8e-114 380.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|302348159|ref|YP_003815797.1| - 0.015 14.2 0.0 0.04 12.8 0.0 1.7 2 0 0 2 2 2 0 Aminotransferase class I and II DUF1778 PF08681.6 gi|302348159|ref|YP_003815797.1| - 0.033 14.0 0.1 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1778) NTP_transferase PF00483.18 gi|302348161|ref|YP_003815799.1| - 5.8e-32 110.9 0.0 7.3e-32 110.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|302348161|ref|YP_003815799.1| - 4.8e-08 32.1 16.9 0.009 15.4 0.5 4.1 1 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|302348161|ref|YP_003815799.1| - 0.018 14.5 7.1 1.3 8.6 2.1 3.6 2 1 1 3 3 3 0 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|302348161|ref|YP_003815799.1| - 0.057 13.5 0.0 0.092 12.8 0.0 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain Glyco_hydro_57 PF03065.10 gi|302348162|ref|YP_003815800.1| - 1.6e-69 234.5 0.0 6.1e-69 232.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|302348162|ref|YP_003815800.1| - 0.00056 19.5 0.0 0.00097 18.7 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase GlnE PF03710.10 gi|302348162|ref|YP_003815800.1| - 0.044 13.0 0.4 0.079 12.2 0.1 1.5 2 0 0 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase DUF2992 PF11208.3 gi|302348162|ref|YP_003815800.1| - 0.081 12.8 0.1 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2992) Glyco_transf_5 PF08323.6 gi|302348163|ref|YP_003815801.1| - 2.5e-34 118.8 0.0 3.6e-34 118.3 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|302348163|ref|YP_003815801.1| - 4e-22 78.4 0.0 1.2e-21 76.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302348163|ref|YP_003815801.1| - 1.6e-08 34.8 0.1 3.2e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|302348163|ref|YP_003815801.1| - 9e-08 32.4 0.1 6.7e-07 29.5 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|302348163|ref|YP_003815801.1| - 2.3e-05 24.5 0.0 0.0001 22.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|302348163|ref|YP_003815801.1| - 0.00064 19.4 0.2 0.097 12.3 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 tRNA_SAD PF07973.9 gi|302348165|ref|YP_003815803.1| - 5.4e-08 32.5 0.3 1.3e-07 31.4 0.2 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|302348165|ref|YP_003815803.1| - 1.2e-07 30.4 0.0 1.6e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) Aminotran_1_2 PF00155.16 gi|302348166|ref|YP_003815804.1| - 1.8e-47 162.0 0.0 2.1e-47 161.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|302348166|ref|YP_003815804.1| - 5.1e-10 38.4 0.0 7e-10 38.0 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.12 gi|302348166|ref|YP_003815804.1| - 2.9e-05 23.2 0.0 5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|302348166|ref|YP_003815804.1| - 0.00026 20.2 0.0 0.00043 19.5 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|302348166|ref|YP_003815804.1| - 0.00031 19.5 0.0 0.00057 18.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Epimerase PF01370.16 gi|302348167|ref|YP_003815805.1| - 3.4e-49 167.3 0.0 4.2e-49 167.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|302348167|ref|YP_003815805.1| - 1.7e-18 66.3 0.0 2e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|302348167|ref|YP_003815805.1| - 8.5e-16 57.6 0.0 1.2e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|302348167|ref|YP_003815805.1| - 1.9e-14 54.1 0.0 2.8e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|302348167|ref|YP_003815805.1| - 3.4e-10 39.2 0.0 4e-09 35.7 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|302348167|ref|YP_003815805.1| - 1e-09 37.6 0.7 2.5e-08 33.1 0.5 2.2 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|302348167|ref|YP_003815805.1| - 1.4e-05 25.1 0.1 2.3e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|302348167|ref|YP_003815805.1| - 9.4e-05 21.7 0.0 0.0005 19.4 0.0 1.9 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.13 gi|302348167|ref|YP_003815805.1| - 0.00037 20.4 0.0 0.00068 19.6 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|302348167|ref|YP_003815805.1| - 0.0037 16.3 0.0 0.0064 15.5 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|302348167|ref|YP_003815805.1| - 0.061 13.7 0.0 0.2 12.1 0.0 1.8 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|302348167|ref|YP_003815805.1| - 0.066 13.6 0.3 0.36 11.2 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase KR PF08659.5 gi|302348167|ref|YP_003815805.1| - 0.075 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 KR domain PsbN PF02468.10 gi|302348168|ref|YP_003815806.1| - 0.042 13.4 0.2 0.17 11.5 0.2 2.1 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) DUF2830 PF11125.3 gi|302348168|ref|YP_003815806.1| - 0.1 12.3 2.3 0.37 10.5 1.6 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2830) ABC_tran PF00005.22 gi|302348169|ref|YP_003815807.1| - 2.2e-36 125.1 0.0 3e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302348169|ref|YP_003815807.1| - 3.2e-16 60.1 0.5 4.9e-14 52.9 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|302348169|ref|YP_003815807.1| - 1.9e-08 33.7 0.2 0.00015 20.9 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain ABC_ATPase PF09818.4 gi|302348169|ref|YP_003815807.1| - 1.2e-06 27.4 0.9 0.0046 15.5 0.1 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class SMC_N PF02463.14 gi|302348169|ref|YP_003815807.1| - 1.5e-06 27.5 0.0 9.9e-06 24.9 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|302348169|ref|YP_003815807.1| - 1.9e-05 24.8 0.2 0.00022 21.3 0.1 2.4 2 1 0 2 2 1 1 AAA domain AAA_23 PF13476.1 gi|302348169|ref|YP_003815807.1| - 0.00016 22.1 0.2 0.00025 21.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|302348169|ref|YP_003815807.1| - 0.00077 19.0 0.1 0.026 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|302348169|ref|YP_003815807.1| - 0.00079 18.8 0.0 0.02 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|302348169|ref|YP_003815807.1| - 0.00092 19.0 0.1 0.0097 15.7 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|302348169|ref|YP_003815807.1| - 0.00093 18.6 0.0 0.0018 17.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|302348169|ref|YP_003815807.1| - 0.0015 18.0 0.2 0.11 11.8 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain Arch_ATPase PF01637.13 gi|302348169|ref|YP_003815807.1| - 0.0026 17.5 0.2 0.0059 16.3 0.2 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|302348169|ref|YP_003815807.1| - 0.0061 16.5 0.1 0.014 15.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.1 gi|302348169|ref|YP_003815807.1| - 0.0063 15.0 0.0 0.011 14.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|302348169|ref|YP_003815807.1| - 0.01 15.7 0.0 0.15 11.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|302348169|ref|YP_003815807.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|302348169|ref|YP_003815807.1| - 0.016 14.7 0.6 0.12 11.8 0.0 2.3 3 0 0 3 3 2 0 AAA domain UPF0079 PF02367.12 gi|302348169|ref|YP_003815807.1| - 0.027 14.0 0.1 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|302348169|ref|YP_003815807.1| - 0.028 14.6 0.1 0.25 11.5 0.0 2.3 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|302348169|ref|YP_003815807.1| - 0.034 13.5 0.1 0.064 12.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|302348169|ref|YP_003815807.1| - 0.034 13.8 0.5 0.23 11.2 0.3 2.4 1 1 0 1 1 1 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|302348169|ref|YP_003815807.1| - 0.041 13.3 0.2 0.68 9.3 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF3584 PF12128.3 gi|302348169|ref|YP_003815807.1| - 0.051 10.9 0.2 0.067 10.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) PEPCK_ATP PF01293.15 gi|302348169|ref|YP_003815807.1| - 0.059 11.8 0.0 0.093 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase T2SE PF00437.15 gi|302348169|ref|YP_003815807.1| - 0.075 11.9 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|302348169|ref|YP_003815807.1| - 0.094 12.5 0.1 0.15 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|302348169|ref|YP_003815807.1| - 0.1 11.7 0.4 10 5.1 0.0 2.2 2 0 0 2 2 2 0 KaiC MutS_V PF00488.16 gi|302348169|ref|YP_003815807.1| - 0.11 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 MutS domain V Zeta_toxin PF06414.7 gi|302348169|ref|YP_003815807.1| - 0.17 10.9 0.0 0.37 9.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|302348169|ref|YP_003815807.1| - 0.27 10.8 0.8 0.57 9.8 0.1 1.8 2 0 0 2 2 2 0 NACHT domain BPD_transp_1 PF00528.17 gi|302348170|ref|YP_003815808.1| - 3.7e-16 59.1 14.4 3.7e-16 59.1 10.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TcpE PF12648.2 gi|302348170|ref|YP_003815808.1| - 0.74 9.9 0.1 0.74 9.9 0.0 3.5 3 1 1 4 4 4 0 TcpE family SBP_bac_11 PF13531.1 gi|302348171|ref|YP_003815809.1| - 2e-23 83.2 1.2 2.7e-23 82.7 0.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein YtxH PF12732.2 gi|302348171|ref|YP_003815809.1| - 0.17 12.2 0.7 0.32 11.3 0.5 1.5 1 0 0 1 1 1 0 YtxH-like protein RHH_1 PF01402.16 gi|302348172|ref|YP_003815810.1| - 5.5e-07 29.2 0.7 7.1e-07 28.8 0.5 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|302348172|ref|YP_003815810.1| - 0.0035 17.0 1.3 0.0066 16.1 0.9 1.5 1 1 0 1 1 1 1 Ribbon-helix-helix domain Oxidored_q1 PF00361.15 gi|302348173|ref|YP_003815811.1| - 1.2e-33 116.5 25.3 1.2e-33 116.5 17.5 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|302348174|ref|YP_003815812.1| - 2.1e-43 148.5 29.2 2.4e-40 138.4 17.4 4.5 5 1 0 5 5 5 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|302348174|ref|YP_003815812.1| - 5.8e-08 32.1 5.4 5.8e-08 32.1 3.7 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus UPF0697 PF15117.1 gi|302348174|ref|YP_003815812.1| - 0.076 12.7 1.8 0.095 12.4 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0697 Oxidored_q1 PF00361.15 gi|302348175|ref|YP_003815813.1| - 3.8e-62 209.9 20.8 3.8e-62 209.9 14.4 2.9 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|302348175|ref|YP_003815813.1| - 0.00011 21.6 0.4 0.00011 21.6 0.3 3.1 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|302348176|ref|YP_003815814.1| - 3.2e-09 36.2 9.5 3.7e-09 36.0 6.6 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q3 PF00499.15 gi|302348177|ref|YP_003815815.1| - 4e-08 33.1 12.6 5.1e-08 32.8 8.7 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Fer4 PF00037.22 gi|302348178|ref|YP_003815816.1| - 2.6e-15 55.2 13.5 1e-09 37.5 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|302348178|ref|YP_003815816.1| - 3.9e-11 42.3 13.9 1.3e-06 28.0 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|302348178|ref|YP_003815816.1| - 5.4e-11 42.1 10.0 1.1e-10 41.1 7.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|302348178|ref|YP_003815816.1| - 9.5e-11 41.9 11.2 1.6e-10 41.1 7.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|302348178|ref|YP_003815816.1| - 2.1e-09 37.4 11.0 3.9e-09 36.6 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|302348178|ref|YP_003815816.1| - 5.7e-09 35.5 11.4 9.5e-05 22.4 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|302348178|ref|YP_003815816.1| - 8e-09 34.9 14.6 1.8e-05 24.3 2.0 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|302348178|ref|YP_003815816.1| - 1.6e-08 34.4 19.0 1.5e-06 28.0 7.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|302348178|ref|YP_003815816.1| - 2.1e-08 34.7 10.0 4.8e-08 33.6 7.0 1.6 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|302348178|ref|YP_003815816.1| - 5.1e-07 29.4 10.2 1.1e-06 28.3 7.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|302348178|ref|YP_003815816.1| - 1.4e-05 25.5 6.5 0.042 14.4 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|302348178|ref|YP_003815816.1| - 5.5e-05 23.4 10.6 0.0039 17.4 8.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|302348178|ref|YP_003815816.1| - 0.00011 22.5 17.5 0.00078 19.8 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|302348178|ref|YP_003815816.1| - 0.0031 17.8 11.5 0.31 11.4 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|302348178|ref|YP_003815816.1| - 0.0051 17.1 13.9 0.02 15.2 1.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Redoxin PF08534.5 gi|302348178|ref|YP_003815816.1| - 0.0055 16.2 0.2 0.008 15.7 0.1 1.3 1 0 0 1 1 1 1 Redoxin Acetone_carb_G PF08882.6 gi|302348178|ref|YP_003815816.1| - 0.25 11.3 2.5 0.37 10.8 1.8 1.1 1 0 0 1 1 1 0 Acetone carboxylase gamma subunit AhpC-TSA PF00578.16 gi|302348178|ref|YP_003815816.1| - 0.29 10.8 1.4 1.7 8.3 0.3 2.4 1 1 1 2 2 2 0 AhpC/TSA family Fer4_20 PF14691.1 gi|302348178|ref|YP_003815816.1| - 2.7 7.6 9.8 2.1 8.0 0.8 2.1 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NADHdh PF00146.16 gi|302348179|ref|YP_003815817.1| - 2e-56 191.3 23.3 2.4e-56 191.0 16.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|302348180|ref|YP_003815818.1| - 2.8e-61 206.8 0.0 4e-61 206.3 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|302348180|ref|YP_003815818.1| - 0.02 13.7 0.0 0.036 12.8 0.0 1.4 1 0 0 1 1 1 0 Nickel-dependent hydrogenase UPF0254 PF06787.6 gi|302348180|ref|YP_003815818.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0254) Complex1_30kDa PF00329.14 gi|302348181|ref|YP_003815819.1| - 3.3e-30 104.3 0.0 4.2e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit tRNA_lig_CPD PF08302.6 gi|302348181|ref|YP_003815819.1| - 0.12 11.6 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Fungal tRNA ligase phosphodiesterase domain HD_assoc PF13286.1 gi|302348181|ref|YP_003815819.1| - 0.13 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphohydrolase-associated domain Oxidored_q6 PF01058.17 gi|302348182|ref|YP_003815820.1| - 2e-21 75.9 0.1 3.4e-21 75.2 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|302348183|ref|YP_003815821.1| - 1.8e-05 24.4 0.5 3e-05 23.7 0.4 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF805 PF05656.9 gi|302348183|ref|YP_003815821.1| - 0.081 12.7 3.5 0.22 11.3 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF805) OppC_N PF12911.2 gi|302348183|ref|YP_003815821.1| - 1.1 8.7 4.5 2.6 7.4 0.2 2.7 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF4149 PF13664.1 gi|302348183|ref|YP_003815821.1| - 1.4 9.0 5.9 4.1 7.5 4.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) Prefoldin_2 PF01920.15 gi|302348184|ref|YP_003815822.1| - 1e-21 76.6 8.5 1.2e-21 76.4 5.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit Tropomyosin_1 PF12718.2 gi|302348184|ref|YP_003815822.1| - 0.015 15.1 4.4 0.077 12.8 1.4 2.0 2 0 0 2 2 2 0 Tropomyosin like TACC PF05010.9 gi|302348184|ref|YP_003815822.1| - 0.022 14.5 3.0 0.035 13.8 2.1 1.2 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) CesA PF11439.3 gi|302348184|ref|YP_003815822.1| - 0.025 14.5 1.4 0.1 12.5 0.0 2.1 2 0 0 2 2 2 0 Type III secretion system filament chaperone CesA HAUS-augmin3 PF14932.1 gi|302348184|ref|YP_003815822.1| - 0.04 13.1 4.0 0.052 12.7 2.7 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF4317 PF14199.1 gi|302348184|ref|YP_003815822.1| - 0.053 12.3 0.5 0.071 11.8 0.4 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4317) Sipho_Gp157 PF05565.6 gi|302348184|ref|YP_003815822.1| - 0.056 13.0 4.3 0.071 12.6 3.0 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Enkurin PF13864.1 gi|302348184|ref|YP_003815822.1| - 0.077 13.2 2.4 1.8 8.8 0.1 2.3 2 0 0 2 2 2 0 Calmodulin-binding DUF3086 PF11285.3 gi|302348184|ref|YP_003815822.1| - 0.11 11.3 0.8 0.17 10.6 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) DUF1878 PF08963.5 gi|302348184|ref|YP_003815822.1| - 0.13 12.4 1.0 0.29 11.3 0.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1878) CENP-F_leu_zip PF10473.4 gi|302348184|ref|YP_003815822.1| - 0.18 11.6 5.6 0.31 10.8 3.8 1.5 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin PF02996.12 gi|302348184|ref|YP_003815822.1| - 0.25 11.0 6.6 3.7 7.2 0.1 2.2 1 1 1 2 2 2 0 Prefoldin subunit DUF4164 PF13747.1 gi|302348184|ref|YP_003815822.1| - 0.25 11.4 5.6 4.1 7.5 1.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) XhlA PF10779.4 gi|302348184|ref|YP_003815822.1| - 0.68 9.8 3.3 2.1 8.3 0.2 2.1 2 0 0 2 2 2 0 Haemolysin XhlA MSP1_C PF07462.6 gi|302348184|ref|YP_003815822.1| - 1.3 7.3 6.7 4 5.7 2.5 2.0 1 1 1 2 2 2 0 Merozoite surface protein 1 (MSP1) C-terminus Seryl_tRNA_N PF02403.17 gi|302348184|ref|YP_003815822.1| - 2 8.4 7.8 7.4 6.6 5.4 1.8 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Cauli_AT PF03233.8 gi|302348184|ref|YP_003815822.1| - 2.3 7.9 5.5 1.7 8.2 1.6 1.9 1 1 1 2 2 2 0 Aphid transmission protein DivIC PF04977.10 gi|302348184|ref|YP_003815822.1| - 7 6.2 9.8 2.7 7.5 3.1 2.1 1 1 1 2 2 2 0 Septum formation initiator DHH PF01368.15 gi|302348185|ref|YP_003815823.1| - 9e-16 57.8 0.0 1.3e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|302348185|ref|YP_003815823.1| - 2.4e-08 33.5 0.2 5.1e-08 32.5 0.2 1.6 1 0 0 1 1 1 1 DHHA1 domain ERCC4 PF02732.10 gi|302348186|ref|YP_003815824.1| - 1.2e-26 93.1 0.0 1.8e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH PF00633.18 gi|302348186|ref|YP_003815824.1| - 1e-11 43.8 0.2 1.8e-06 27.3 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|302348186|ref|YP_003815824.1| - 1e-11 44.7 0.3 2.7e-11 43.4 0.1 1.8 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|302348186|ref|YP_003815824.1| - 8.3e-10 38.4 0.1 1.5e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|302348186|ref|YP_003815824.1| - 0.0006 19.6 0.2 0.017 15.0 0.1 2.3 1 1 0 1 1 1 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|302348186|ref|YP_003815824.1| - 0.00066 19.8 0.1 0.0064 16.7 0.0 2.1 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.1 gi|302348186|ref|YP_003815824.1| - 0.00089 19.3 0.0 1.8 8.8 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|302348186|ref|YP_003815824.1| - 0.0022 17.9 0.1 0.014 15.3 0.0 2.2 2 0 0 2 2 2 1 IMS family HHH motif HhH-GPD PF00730.20 gi|302348186|ref|YP_003815824.1| - 0.015 15.6 0.1 0.058 13.6 0.0 1.9 2 0 0 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein Transposase_20 PF02371.11 gi|302348186|ref|YP_003815824.1| - 0.079 13.0 0.0 0.66 10.1 0.0 2.2 1 1 1 2 2 2 0 Transposase IS116/IS110/IS902 family polyprenyl_synt PF00348.12 gi|302348187|ref|YP_003815825.1| - 4.9e-34 117.3 0.0 6.9e-34 116.8 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase GTP_EFTU PF00009.22 gi|302348189|ref|YP_003815827.1| - 6.8e-58 195.2 0.3 9.6e-58 194.7 0.2 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|302348189|ref|YP_003815827.1| - 3.1e-33 113.8 0.0 1e-32 112.2 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|302348189|ref|YP_003815827.1| - 2.4e-22 78.5 0.0 6.1e-22 77.2 0.0 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|302348189|ref|YP_003815827.1| - 2.2e-20 72.2 0.0 6e-20 70.9 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|302348189|ref|YP_003815827.1| - 1.8e-12 47.1 0.2 3.9e-12 46.1 0.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|302348189|ref|YP_003815827.1| - 5.5e-05 23.1 0.1 0.00012 22.0 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|302348189|ref|YP_003815827.1| - 0.026 13.9 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 Ras family SRPRB PF09439.5 gi|302348189|ref|YP_003815827.1| - 0.12 11.6 0.0 0.35 10.0 0.0 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF371 PF04027.8 gi|302348190|ref|YP_003815828.1| - 1.8e-46 157.0 0.1 2.1e-46 156.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PCMT PF01135.14 gi|302348191|ref|YP_003815829.1| - 6.5e-76 254.5 0.1 7.6e-76 254.3 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|302348191|ref|YP_003815829.1| - 2.7e-08 33.5 0.0 3.4e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|302348191|ref|YP_003815829.1| - 1.1e-07 31.6 0.0 1.5e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|302348191|ref|YP_003815829.1| - 1.5e-06 28.7 0.0 2.7e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|302348191|ref|YP_003815829.1| - 2.1e-06 26.9 0.1 3.3e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_26 PF13659.1 gi|302348191|ref|YP_003815829.1| - 9.8e-06 25.5 0.0 1.5e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|302348191|ref|YP_003815829.1| - 5.9e-05 22.2 0.0 8.2e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|302348191|ref|YP_003815829.1| - 0.0014 19.4 0.0 0.0024 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|302348191|ref|YP_003815829.1| - 0.0057 15.6 0.1 0.0088 14.9 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.1 gi|302348191|ref|YP_003815829.1| - 0.036 14.4 0.0 0.057 13.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|302348191|ref|YP_003815829.1| - 0.037 13.1 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|302348191|ref|YP_003815829.1| - 0.072 12.4 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|302348191|ref|YP_003815829.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|302348191|ref|YP_003815829.1| - 0.16 11.0 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family tRNA-synt_2b PF00587.20 gi|302348192|ref|YP_003815830.1| - 5.7e-26 91.1 0.1 1.2e-25 90.1 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|302348192|ref|YP_003815830.1| - 2.2e-20 72.3 0.0 5.2e-20 71.1 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|302348192|ref|YP_003815830.1| - 7.9e-18 64.1 0.1 1.9e-17 62.9 0.1 1.6 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal Elf1 PF05129.8 gi|302348192|ref|YP_003815830.1| - 0.12 12.0 0.2 2.6 7.8 0.0 2.5 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Rad50_zn_hook PF04423.9 gi|302348192|ref|YP_003815830.1| - 0.18 11.3 1.1 0.57 9.6 0.8 1.8 1 0 0 1 1 1 0 Rad50 zinc hook motif ATP-synt_C PF00137.16 gi|302348193|ref|YP_003815831.1| - 6.8e-20 70.7 28.4 1.4e-18 66.5 13.8 2.1 2 0 0 2 2 2 2 ATP synthase subunit C Yip1 PF04893.12 gi|302348193|ref|YP_003815831.1| - 0.61 9.5 14.2 0.71 9.3 9.8 1.1 1 0 0 1 1 1 0 Yip1 domain DUF418 PF04235.7 gi|302348193|ref|YP_003815831.1| - 4.5 6.9 8.1 0.73 9.4 2.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF418) ABC2_membrane_2 PF12679.2 gi|302348193|ref|YP_003815831.1| - 8.7 5.1 11.3 0.5 9.1 0.1 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein dUTPase PF00692.14 gi|302348194|ref|YP_003815832.1| - 1.5e-15 56.8 0.0 1.9e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|302348194|ref|YP_003815832.1| - 3.8e-06 25.5 0.0 0.92 7.8 0.0 3.0 1 1 1 3 3 3 3 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF1614 PF07758.6 gi|302348195|ref|YP_003815833.1| - 4.3e-44 150.3 14.5 4.3e-44 150.3 10.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) Met_10 PF02475.11 gi|302348196|ref|YP_003815834.1| - 4.6e-42 143.8 0.0 7.2e-42 143.2 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|302348196|ref|YP_003815834.1| - 7.1e-11 42.1 0.0 1.3e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|302348196|ref|YP_003815834.1| - 5.7e-07 30.1 0.0 9.6e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302348196|ref|YP_003815834.1| - 7.5e-06 25.6 0.0 1.1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|302348196|ref|YP_003815834.1| - 0.00069 18.6 0.0 0.0011 18.0 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.10 gi|302348196|ref|YP_003815834.1| - 0.0011 18.3 0.1 0.0022 17.3 0.0 1.7 2 1 0 2 2 2 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|302348196|ref|YP_003815834.1| - 0.002 17.2 0.0 0.0034 16.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NAD_kinase PF01513.16 gi|302348198|ref|YP_003815836.1| - 5.9e-39 133.5 0.2 9e-39 132.9 0.1 1.3 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|302348198|ref|YP_003815836.1| - 0.00079 18.8 0.2 0.057 12.8 0.0 2.2 2 0 0 2 2 2 2 Diacylglycerol kinase catalytic domain NYN_YacP PF05991.6 gi|302348199|ref|YP_003815837.1| - 0.034 13.9 0.1 0.077 12.7 0.0 1.6 1 1 1 2 2 2 0 YacP-like NYN domain Glyco_trans_4_4 PF13579.1 gi|302348199|ref|YP_003815837.1| - 0.04 14.0 0.7 0.099 12.7 0.0 1.9 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain PIN_4 PF13638.1 gi|302348199|ref|YP_003815837.1| - 0.058 13.4 0.0 0.083 12.9 0.0 1.4 1 1 0 1 1 1 0 PIN domain UPF0278 PF08745.6 gi|302348199|ref|YP_003815837.1| - 0.12 11.5 1.8 1.4 8.0 0.5 2.0 1 1 0 2 2 2 0 UPF0278 family UPF0004 PF00919.15 gi|302348200|ref|YP_003815838.1| - 5.2e-24 83.9 0.0 9.4e-24 83.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|302348200|ref|YP_003815838.1| - 1.1e-22 80.9 0.0 3.1e-22 79.5 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.15 gi|302348200|ref|YP_003815838.1| - 0.00014 21.6 0.0 0.00026 20.7 0.0 1.5 1 0 0 1 1 1 1 TRAM domain P21-Arc PF04062.9 gi|302348200|ref|YP_003815838.1| - 0.11 12.2 0.1 0.23 11.1 0.0 1.6 2 0 0 2 2 2 0 ARP2/3 complex ARPC3 (21 kDa) subunit Endonuc_Holl PF10107.4 gi|302348201|ref|YP_003815839.1| - 1.6e-40 138.3 0.1 1.8e-40 138.2 0.1 1.0 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase VRR_NUC PF08774.6 gi|302348201|ref|YP_003815839.1| - 0.0026 17.7 0.1 0.0051 16.8 0.1 1.3 1 1 0 1 1 1 1 VRR-NUC domain Fer4_15 PF13459.1 gi|302348201|ref|YP_003815839.1| - 0.076 13.5 0.7 1.8 9.2 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain HK97-gp10_like PF04883.7 gi|302348201|ref|YP_003815839.1| - 0.082 13.8 0.2 0.17 12.8 0.2 1.6 1 1 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component DUF4446 PF14584.1 gi|302348201|ref|YP_003815839.1| - 0.097 12.4 0.9 1.3 8.8 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) CTP_synth_N PF06418.9 gi|302348202|ref|YP_003815840.1| - 6.1e-126 419.1 0.1 8.1e-126 418.7 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|302348202|ref|YP_003815840.1| - 4.5e-43 146.9 0.0 8.2e-43 146.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|302348202|ref|YP_003815840.1| - 4e-12 46.0 0.0 1.2e-11 44.5 0.0 1.8 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.18 gi|302348202|ref|YP_003815840.1| - 5.1e-06 26.0 0.0 7.9e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|302348202|ref|YP_003815840.1| - 0.0035 16.4 0.1 0.0091 15.0 0.0 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase ArgK PF03308.11 gi|302348202|ref|YP_003815840.1| - 1 8.1 4.0 0.16 10.7 0.2 1.5 2 0 0 2 2 2 0 ArgK protein KH_5 PF13184.1 gi|302348203|ref|YP_003815841.1| - 0.00025 20.7 0.1 0.00054 19.7 0.0 1.6 1 0 0 1 1 1 1 NusA-like KH domain Ribosomal_S7e PF01251.13 gi|302348203|ref|YP_003815841.1| - 0.0034 16.8 0.0 2 7.8 0.0 2.8 2 1 0 2 2 2 2 Ribosomal protein S7e XPG_I PF00867.13 gi|302348204|ref|YP_003815842.1| - 1.5e-26 92.2 0.0 2.6e-26 91.5 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|302348204|ref|YP_003815842.1| - 4.8e-22 78.1 0.0 9.4e-22 77.1 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain DUF4659 PF15558.1 gi|302348204|ref|YP_003815842.1| - 0.0027 16.4 2.1 0.0047 15.6 1.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4659) FUR PF01475.14 gi|302348205|ref|YP_003815843.1| - 0.12 12.3 0.1 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family AAA PF00004.24 gi|302348206|ref|YP_003815844.1| - 9.4e-99 326.7 0.0 8.4e-49 165.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|302348206|ref|YP_003815844.1| - 4.1e-31 106.7 0.2 3e-30 104.0 0.7 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|302348206|ref|YP_003815844.1| - 3e-15 55.8 0.0 5.1e-07 28.9 0.0 3.2 3 2 1 4 4 4 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|302348206|ref|YP_003815844.1| - 3.4e-13 49.8 0.0 7.3e-06 25.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|302348206|ref|YP_003815844.1| - 3.6e-13 49.8 0.6 2e-05 24.7 0.0 4.0 2 2 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|302348206|ref|YP_003815844.1| - 2.3e-12 47.3 0.0 1.7e-05 24.8 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|302348206|ref|YP_003815844.1| - 5.7e-12 45.0 5.0 2.1e-11 43.2 1.8 2.7 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.1 gi|302348206|ref|YP_003815844.1| - 4.2e-11 42.8 0.0 6.5e-05 22.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|302348206|ref|YP_003815844.1| - 5.5e-11 42.5 0.0 0.0003 20.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|302348206|ref|YP_003815844.1| - 8.2e-11 41.7 1.9 0.001 18.8 0.1 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|302348206|ref|YP_003815844.1| - 9e-11 41.1 0.3 0.00021 20.1 0.0 2.9 3 0 0 3 3 3 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|302348206|ref|YP_003815844.1| - 2.3e-10 39.9 0.0 0.00024 20.2 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_17 PF13207.1 gi|302348206|ref|YP_003815844.1| - 2.4e-10 41.2 0.1 0.00042 21.1 0.0 3.1 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.12 gi|302348206|ref|YP_003815844.1| - 5.7e-09 35.6 0.2 0.003 17.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|302348206|ref|YP_003815844.1| - 8.4e-08 32.3 0.0 0.018 14.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|302348206|ref|YP_003815844.1| - 2e-07 30.3 1.3 0.0079 15.3 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|302348206|ref|YP_003815844.1| - 2.4e-07 30.4 3.4 0.0088 15.7 0.1 3.0 2 0 0 2 2 2 2 Part of AAA domain Arch_ATPase PF01637.13 gi|302348206|ref|YP_003815844.1| - 2.9e-07 30.4 0.9 0.058 13.0 0.0 4.3 2 2 2 4 4 4 1 Archaeal ATPase Sigma54_activat PF00158.21 gi|302348206|ref|YP_003815844.1| - 4.6e-07 29.4 0.0 0.028 13.9 0.0 4.0 3 1 0 3 3 3 2 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|302348206|ref|YP_003815844.1| - 7.7e-07 29.2 0.0 0.057 13.4 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|302348206|ref|YP_003815844.1| - 1.4e-06 28.0 0.2 0.024 14.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|302348206|ref|YP_003815844.1| - 1.5e-06 28.5 0.0 0.067 13.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|302348206|ref|YP_003815844.1| - 2.6e-06 27.0 13.9 0.21 10.9 0.2 4.6 3 2 2 5 5 4 2 AAA domain RNA_helicase PF00910.17 gi|302348206|ref|YP_003815844.1| - 7.7e-06 26.0 0.0 0.15 12.2 0.0 2.6 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.22 gi|302348206|ref|YP_003815844.1| - 1.3e-05 25.4 0.0 0.16 12.2 0.0 2.4 2 0 0 2 2 2 2 ABC transporter DUF815 PF05673.8 gi|302348206|ref|YP_003815844.1| - 1.6e-05 23.9 0.0 0.038 12.9 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) PhoH PF02562.11 gi|302348206|ref|YP_003815844.1| - 2e-05 23.9 1.0 0.18 11.0 0.1 2.5 2 0 0 2 2 2 2 PhoH-like protein KaiC PF06745.8 gi|302348206|ref|YP_003815844.1| - 2.2e-05 23.6 1.9 0.3 10.1 0.0 3.8 2 2 2 4 4 4 2 KaiC Vps4_C PF09336.5 gi|302348206|ref|YP_003815844.1| - 3.3e-05 23.6 0.1 0.012 15.4 0.0 3.3 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain Parvo_NS1 PF01057.12 gi|302348206|ref|YP_003815844.1| - 5.1e-05 22.2 0.1 0.11 11.2 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|302348206|ref|YP_003815844.1| - 5.3e-05 22.9 1.1 0.34 10.5 0.1 3.3 4 0 0 4 4 3 2 NACHT domain AAA_3 PF07726.6 gi|302348206|ref|YP_003815844.1| - 0.00012 21.6 0.0 0.63 9.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|302348206|ref|YP_003815844.1| - 0.0014 18.2 0.0 1.3 8.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|302348206|ref|YP_003815844.1| - 0.0015 18.0 0.0 0.95 8.9 0.0 2.9 3 0 0 3 3 3 1 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|302348206|ref|YP_003815844.1| - 0.0015 17.4 0.0 0.95 8.2 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain NTPase_1 PF03266.10 gi|302348206|ref|YP_003815844.1| - 0.0018 18.0 0.9 9.9 5.8 0.0 3.8 2 1 1 3 3 3 0 NTPase UPF0079 PF02367.12 gi|302348206|ref|YP_003815844.1| - 0.0019 17.8 0.1 2 8.0 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 DUF2075 PF09848.4 gi|302348206|ref|YP_003815844.1| - 0.0024 16.9 0.0 0.4 9.5 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|302348206|ref|YP_003815844.1| - 0.0042 16.7 0.0 0.76 9.3 0.0 2.6 2 1 0 2 2 2 1 Bacterial dnaA protein Guanylate_kin PF00625.16 gi|302348206|ref|YP_003815844.1| - 0.0042 16.5 0.3 11 5.4 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase IPT PF01745.11 gi|302348206|ref|YP_003815844.1| - 0.0087 15.2 0.2 0.94 8.5 0.0 2.5 2 0 0 2 2 2 1 Isopentenyl transferase AAA_30 PF13604.1 gi|302348206|ref|YP_003815844.1| - 0.0087 15.6 0.2 5.8 6.4 0.1 2.6 2 0 0 2 2 2 0 AAA domain SKI PF01202.17 gi|302348206|ref|YP_003815844.1| - 0.0097 15.7 0.0 3.9 7.3 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase AFG1_ATPase PF03969.11 gi|302348206|ref|YP_003815844.1| - 0.016 14.0 0.0 2.7 6.7 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase ResIII PF04851.10 gi|302348206|ref|YP_003815844.1| - 0.017 14.9 0.0 6.4 6.5 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_29 PF13555.1 gi|302348206|ref|YP_003815844.1| - 0.023 14.2 0.0 6 6.4 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|302348206|ref|YP_003815844.1| - 0.029 13.8 2.5 3.8 6.8 0.0 3.6 2 1 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|302348206|ref|YP_003815844.1| - 0.048 13.9 0.1 9.5 6.4 0.0 2.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|302348206|ref|YP_003815844.1| - 0.099 12.0 0.3 17 4.8 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|302348206|ref|YP_003815844.1| - 0.1 12.1 0.0 13 5.2 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Molydop_binding PF01568.16 gi|302348206|ref|YP_003815844.1| - 0.13 12.0 0.0 0.82 9.5 0.1 2.2 2 0 0 2 2 2 0 Molydopterin dinucleotide binding domain KTI12 PF08433.5 gi|302348206|ref|YP_003815844.1| - 0.15 11.2 0.0 9.8 5.2 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 HDC PF02329.11 gi|302348207|ref|YP_003815845.1| - 0.1 11.2 0.1 0.099 11.2 0.1 1.0 1 0 0 1 1 1 0 Histidine carboxylase PI chain Radical_SAM PF04055.16 gi|302348208|ref|YP_003815846.1| - 8.2e-16 58.6 0.0 7.9e-15 55.4 0.0 2.3 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|302348208|ref|YP_003815846.1| - 0.032 14.1 0.1 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 B12 binding domain UPF0104 PF03706.8 gi|302348209|ref|YP_003815847.1| - 3.8e-13 49.3 26.0 3.8e-13 49.3 18.0 1.8 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0104) tRNA-synt_2 PF00152.15 gi|302348210|ref|YP_003815848.1| - 3.4e-83 279.1 0.0 4.9e-83 278.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|302348210|ref|YP_003815848.1| - 1.9e-14 53.2 1.5 3.4e-14 52.4 1.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|302348210|ref|YP_003815848.1| - 0.0082 15.3 0.2 0.14 11.2 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) ATP_bind_4 PF01902.12 gi|302348211|ref|YP_003815849.1| - 1.3e-51 175.0 0.0 1.5e-51 174.8 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region ThiI PF02568.9 gi|302348211|ref|YP_003815849.1| - 0.00093 18.7 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|302348211|ref|YP_003815849.1| - 0.045 13.0 0.0 0.092 12.0 0.0 1.6 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Asp_Glu_race PF01177.17 gi|302348211|ref|YP_003815849.1| - 0.16 11.8 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase Peptidase_M50 PF02163.17 gi|302348213|ref|YP_003815851.1| - 1.2e-13 50.5 9.0 1.1e-12 47.2 5.4 2.6 1 1 0 1 1 1 1 Peptidase family M50 TP_methylase PF00590.15 gi|302348214|ref|YP_003815852.1| - 6.3e-20 71.7 0.1 8.3e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases PadR PF03551.9 gi|302348215|ref|YP_003815853.1| - 1.8e-17 62.8 0.0 3.6e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Y2_Tnp PF04986.8 gi|302348215|ref|YP_003815853.1| - 0.013 15.2 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Putative transposase V_ATPase_I PF01496.14 gi|302348216|ref|YP_003815854.1| - 9.6e-55 185.7 0.1 6.6e-35 120.1 0.0 2.4 2 1 0 2 2 2 2 V-type ATPase 116kDa subunit family DUF4200 PF13863.1 gi|302348216|ref|YP_003815854.1| - 0.0016 18.3 0.5 0.78 9.6 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4200) DUF1319 PF07028.6 gi|302348216|ref|YP_003815854.1| - 0.015 15.4 0.6 4.5 7.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1319) MbeD_MobD PF04899.7 gi|302348216|ref|YP_003815854.1| - 0.026 14.4 0.2 4.4 7.2 0.0 2.4 2 0 0 2 2 2 0 MbeD/MobD like DivIC PF04977.10 gi|302348216|ref|YP_003815854.1| - 0.031 13.7 1.2 1.2 8.6 0.1 2.3 2 0 0 2 2 2 0 Septum formation initiator Reo_sigmaC PF04582.7 gi|302348216|ref|YP_003815854.1| - 0.051 12.7 0.8 0.33 10.0 0.0 2.0 2 0 0 2 2 2 0 Reovirus sigma C capsid protein DUF948 PF06103.6 gi|302348216|ref|YP_003815854.1| - 0.083 12.7 1.4 14 5.6 0.0 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|302348216|ref|YP_003815854.1| - 0.083 12.6 0.1 2.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.6 gi|302348216|ref|YP_003815854.1| - 0.23 11.3 1.3 2.8 7.9 0.0 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) HalX PF08663.5 gi|302348216|ref|YP_003815854.1| - 1.8 8.6 4.2 3 7.8 0.1 2.8 3 0 0 3 3 3 0 HalX domain ATP-synt_F PF01990.12 gi|302348217|ref|YP_003815855.1| - 7e-09 35.9 0.1 7.9e-09 35.7 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF1611 PF07755.6 gi|302348217|ref|YP_003815855.1| - 0.007 15.0 0.0 0.0073 14.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) DUF3572 PF12096.3 gi|302348217|ref|YP_003815855.1| - 0.035 13.9 0.0 0.076 12.8 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3572) DpnD-PcfM PF14207.1 gi|302348217|ref|YP_003815855.1| - 0.079 12.7 0.1 3.8 7.3 0.1 2.3 2 0 0 2 2 2 0 DpnD/PcfM-like protein Usp PF00582.21 gi|302348217|ref|YP_003815855.1| - 0.098 12.8 0.2 0.34 11.0 0.1 1.8 1 1 0 1 1 1 0 Universal stress protein family TIR_2 PF13676.1 gi|302348217|ref|YP_003815855.1| - 0.12 12.5 0.1 0.16 12.1 0.1 1.2 1 0 0 1 1 1 0 TIR domain vATP-synt_E PF01991.13 gi|302348218|ref|YP_003815856.1| - 1.5e-14 53.7 4.9 1.9e-14 53.4 3.4 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Terminase_1 PF03354.10 gi|302348218|ref|YP_003815856.1| - 0.019 13.4 0.0 0.022 13.1 0.0 1.2 1 0 0 1 1 1 0 Phage Terminase Dynamin_M PF01031.15 gi|302348218|ref|YP_003815856.1| - 0.031 13.0 0.2 1.8 7.2 0.0 2.2 2 0 0 2 2 2 0 Dynamin central region DUF445 PF04286.7 gi|302348218|ref|YP_003815856.1| - 0.19 11.2 4.8 0.27 10.7 3.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF445) ATP-synt_ab PF00006.20 gi|302348219|ref|YP_003815857.1| - 6.8e-94 313.3 0.0 1e-93 312.7 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|302348219|ref|YP_003815857.1| - 2.2e-17 63.5 0.1 3.8e-17 62.7 0.1 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|302348219|ref|YP_003815857.1| - 1.9e-13 50.3 2.4 4.7e-13 49.1 1.1 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain DUF853 PF05872.7 gi|302348219|ref|YP_003815857.1| - 0.026 12.8 0.1 0.04 12.2 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) Peptidase_M23 PF01551.17 gi|302348219|ref|YP_003815857.1| - 0.092 12.8 0.0 2.3 8.3 0.0 2.3 2 0 0 2 2 2 0 Peptidase family M23 AAA_22 PF13401.1 gi|302348219|ref|YP_003815857.1| - 0.1 12.7 0.1 0.32 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|302348219|ref|YP_003815857.1| - 0.12 12.1 0.4 0.71 9.6 0.3 2.3 1 1 0 1 1 1 0 Part of AAA domain ATP-synt_ab PF00006.20 gi|302348220|ref|YP_003815858.1| - 3.1e-64 216.4 0.0 4e-64 216.0 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|302348220|ref|YP_003815858.1| - 1.8e-16 60.6 0.4 3.6e-16 59.6 0.3 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|302348220|ref|YP_003815858.1| - 3.5e-12 46.3 2.7 8.8e-12 45.0 1.8 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|302348220|ref|YP_003815858.1| - 0.00019 21.2 0.8 0.00041 20.1 0.5 1.6 1 0 0 1 1 1 1 HAS barrel domain AA_kinase PF00696.23 gi|302348221|ref|YP_003815859.1| - 3e-20 72.8 0.0 3.9e-20 72.4 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family DUF3924 PF13062.1 gi|302348222|ref|YP_003815860.1| - 0.051 13.4 0.3 1.3 8.9 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3924) IF2_N PF04760.10 gi|302348222|ref|YP_003815860.1| - 0.09 12.4 0.4 0.82 9.3 0.1 2.5 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Transformer PF06495.6 gi|302348223|ref|YP_003815861.1| - 0.12 12.2 7.2 0.16 11.8 5.0 1.2 1 0 0 1 1 1 0 Fruit fly transformer protein DUF1509 PF07420.6 gi|302348223|ref|YP_003815861.1| - 0.48 9.6 6.1 0.59 9.3 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1509) PRTP PF01366.13 gi|302348223|ref|YP_003815861.1| - 0.52 8.2 2.8 0.62 7.9 2.0 1.1 1 0 0 1 1 1 0 Herpesvirus processing and transport protein Pex14_N PF04695.8 gi|302348223|ref|YP_003815861.1| - 6.9 6.7 10.0 1.6 8.7 2.2 2.0 2 0 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region RNA_pol_Rpb6 PF01192.17 gi|302348224|ref|YP_003815862.1| - 4.1e-12 45.6 0.0 5.6e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Ribosomal_L21e PF01157.13 gi|302348226|ref|YP_003815864.1| - 5.5e-25 87.0 0.7 6.1e-25 86.9 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|302348227|ref|YP_003815865.1| - 1.7e-07 31.2 0.0 2.3e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 Topoisom_bac PF01131.15 gi|302348228|ref|YP_003815866.1| - 2.5e-90 303.2 0.0 3.1e-90 302.9 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|302348228|ref|YP_003815866.1| - 2.7e-10 40.0 0.0 6.3e-10 38.9 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HTH_17 PF12728.2 gi|302348228|ref|YP_003815866.1| - 0.0097 16.1 0.7 1.2 9.3 0.0 4.2 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|302348228|ref|YP_003815866.1| - 0.029 13.9 0.5 0.13 11.7 0.1 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF2240 PF09999.4 gi|302348228|ref|YP_003815866.1| - 0.033 13.6 0.1 6.1 6.2 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2240) HTH_22 PF13309.1 gi|302348228|ref|YP_003815866.1| - 0.051 13.3 0.0 3 7.6 0.0 3.0 2 0 0 2 2 2 0 HTH domain MarR_2 PF12802.2 gi|302348228|ref|YP_003815866.1| - 0.083 12.5 0.2 16 5.2 0.0 3.8 4 0 0 4 4 4 0 MarR family NTS PF15447.1 gi|302348228|ref|YP_003815866.1| - 0.17 12.2 0.0 24 5.4 0.0 2.7 2 0 0 2 2 2 0 N-terminal segments of PfEMP1 RHH_1 PF01402.16 gi|302348228|ref|YP_003815866.1| - 0.19 11.6 3.5 0.14 12.1 0.4 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Peptidase_S24 PF00717.18 gi|302348229|ref|YP_003815867.1| - 3.2e-09 36.2 0.4 6.9e-09 35.2 0.1 1.8 2 1 0 2 2 2 1 Peptidase S24-like MutS_I PF01624.15 gi|302348229|ref|YP_003815867.1| - 0.071 13.1 0.0 0.097 12.7 0.0 1.2 1 0 0 1 1 1 0 MutS domain I NLPC_P60 PF00877.14 gi|302348229|ref|YP_003815867.1| - 0.13 12.0 0.3 0.9 9.3 0.2 2.0 1 1 1 2 2 2 0 NlpC/P60 family Ribonuc_red_lgC PF02867.10 gi|302348230|ref|YP_003815868.1| - 5.9e-123 411.2 0.0 1.4e-91 307.7 0.0 2.9 2 1 0 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|302348230|ref|YP_003815868.1| - 2.4e-14 52.8 0.4 2.4e-14 52.8 0.3 2.3 3 0 0 3 3 3 1 Ribonucleotide reductase, all-alpha domain zf-ribbon_3 PF13248.1 gi|302348232|ref|YP_003815870.1| - 0.012 14.7 1.4 0.022 13.9 1.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|302348232|ref|YP_003815870.1| - 0.11 12.2 0.6 0.2 11.4 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|302348232|ref|YP_003815870.1| - 0.2 11.1 1.2 1 8.8 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|302348232|ref|YP_003815870.1| - 1.1 8.8 3.1 11 5.6 1.9 2.2 1 1 2 3 3 3 0 zinc-ribbon domain Radical_SAM PF04055.16 gi|302348233|ref|YP_003815871.1| - 1.4e-15 57.8 0.0 2.1e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|302348233|ref|YP_003815871.1| - 6.2e-09 35.9 0.0 1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|302348233|ref|YP_003815871.1| - 5.5e-07 29.7 0.0 8.1e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|302348234|ref|YP_003815872.1| - 2.8e-11 43.2 3.4 4.2e-11 42.6 2.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|302348234|ref|YP_003815872.1| - 8.3e-10 38.8 2.4 1.3e-09 38.2 1.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|302348234|ref|YP_003815872.1| - 5.9e-09 35.6 15.9 2.3e-07 30.4 5.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|302348234|ref|YP_003815872.1| - 8.3e-09 34.6 11.5 1.5e-05 24.3 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|302348234|ref|YP_003815872.1| - 3e-08 33.7 3.6 0.00096 19.3 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|302348234|ref|YP_003815872.1| - 1.8e-07 31.4 3.8 0.0037 17.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|302348234|ref|YP_003815872.1| - 1.9e-07 31.3 7.5 5.7e-07 29.8 5.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|302348234|ref|YP_003815872.1| - 4.8e-07 29.3 12.0 0.0019 18.0 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|302348234|ref|YP_003815872.1| - 6.7e-07 28.9 12.9 0.00066 19.4 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|302348234|ref|YP_003815872.1| - 7.2e-06 25.7 6.1 0.0097 15.7 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|302348234|ref|YP_003815872.1| - 2.3e-05 24.3 12.6 0.017 15.4 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|302348234|ref|YP_003815872.1| - 6.1e-05 22.6 1.2 0.19 11.3 0.3 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|302348234|ref|YP_003815872.1| - 0.00094 19.8 9.6 0.0071 17.0 6.9 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|302348234|ref|YP_003815872.1| - 0.0041 17.5 17.0 0.032 14.8 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|302348234|ref|YP_003815872.1| - 0.014 15.9 3.4 1.9 9.0 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain CdhC PF03598.10 gi|302348234|ref|YP_003815872.1| - 0.068 11.6 0.1 0.11 10.9 0.1 1.3 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase complex beta subunit Fer4_13 PF13370.1 gi|302348234|ref|YP_003815872.1| - 1 9.8 9.6 2.5 8.5 1.2 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain CCG PF02754.11 gi|302348235|ref|YP_003815873.1| - 9.2e-08 31.9 0.0 1.8e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Cysteine-rich domain DEAD PF00270.24 gi|302348237|ref|YP_003815875.1| - 2e-32 112.0 0.0 1.4e-31 109.2 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|302348237|ref|YP_003815875.1| - 3.5e-20 72.5 0.0 7.1e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.26 gi|302348237|ref|YP_003815875.1| - 6.6e-16 57.9 0.1 1.9e-15 56.4 0.1 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain PhoH PF02562.11 gi|302348237|ref|YP_003815875.1| - 0.0011 18.2 0.0 2 7.5 0.0 2.7 3 0 0 3 3 3 2 PhoH-like protein DUF4379 PF14311.1 gi|302348237|ref|YP_003815875.1| - 0.017 14.9 0.4 0.033 14.0 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) Zn-ribbon_8 PF09723.5 gi|302348237|ref|YP_003815875.1| - 0.034 14.1 0.0 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|302348237|ref|YP_003815875.1| - 0.17 11.3 0.5 0.35 10.3 0.3 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|302348237|ref|YP_003815875.1| - 0.28 10.9 0.6 8.9 6.1 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain UPF0515 PF15135.1 gi|302348237|ref|YP_003815875.1| - 0.29 10.1 0.0 0.53 9.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 zinc_ribbon_5 PF13719.1 gi|302348237|ref|YP_003815875.1| - 0.36 10.4 1.9 5.9 6.5 0.1 2.5 1 1 1 2 2 2 0 zinc-ribbon domain Cpn60_TCP1 PF00118.19 gi|302348238|ref|YP_003815876.1| - 1.9e-166 554.4 9.4 2.2e-166 554.2 6.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AsnC_trans_reg PF01037.16 gi|302348238|ref|YP_003815876.1| - 0.041 13.5 0.1 2.2 8.0 0.1 2.6 2 0 0 2 2 2 0 AsnC family zinc-ribbons_6 PF07191.7 gi|302348239|ref|YP_003815877.1| - 0.014 15.2 1.8 0.038 13.7 1.2 1.7 1 1 0 1 1 1 0 zinc-ribbons XPA_N PF01286.13 gi|302348239|ref|YP_003815877.1| - 2.2 8.0 5.1 18 5.1 0.1 2.4 2 0 0 2 2 2 0 XPA protein N-terminal Arena_nucleocap PF00843.12 gi|302348240|ref|YP_003815878.1| - 0.13 10.0 0.0 0.14 9.9 0.0 1.0 1 0 0 1 1 1 0 Arenavirus nucleocapsid protein DUF1512 PF07431.7 gi|302348241|ref|YP_003815879.1| - 1e-132 442.2 0.2 1.2e-132 442.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Peptidase_M24 PF00557.19 gi|302348242|ref|YP_003815880.1| - 3.5e-40 137.8 0.0 4.1e-40 137.5 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Lactamase_B_3 PF13483.1 gi|302348243|ref|YP_003815881.1| - 1.3e-27 96.4 0.2 1.9e-27 95.9 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|302348243|ref|YP_003815881.1| - 2.4e-20 72.8 0.2 3e-20 72.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|302348243|ref|YP_003815881.1| - 9.9e-14 51.4 3.2 1.4e-13 50.9 2.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily ABC_tran PF00005.22 gi|302348244|ref|YP_003815882.1| - 1.9e-38 131.8 0.0 7.9e-19 68.3 0.0 2.6 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|302348244|ref|YP_003815882.1| - 1.1e-13 50.9 0.5 0.0003 20.1 0.0 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|302348244|ref|YP_003815882.1| - 1e-12 48.6 4.3 0.01 15.8 0.0 4.3 2 2 2 4 4 4 3 AAA domain RLI PF04068.10 gi|302348244|ref|YP_003815882.1| - 2.4e-09 36.6 2.6 2.4e-09 36.6 1.8 1.9 2 0 0 2 2 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|302348244|ref|YP_003815882.1| - 5.2e-09 35.3 5.7 5.2e-09 35.3 4.0 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_22 PF13401.1 gi|302348244|ref|YP_003815882.1| - 6.4e-08 32.8 0.0 0.00018 21.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|302348244|ref|YP_003815882.1| - 8.3e-08 33.0 1.0 0.0067 17.2 0.0 2.9 2 2 0 2 2 2 2 AAA domain Fer4_6 PF12837.2 gi|302348244|ref|YP_003815882.1| - 2e-07 30.6 15.2 1.2e-06 28.0 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|302348244|ref|YP_003815882.1| - 3.4e-07 29.7 14.4 6.1e-06 25.8 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_18 PF13238.1 gi|302348244|ref|YP_003815882.1| - 4.5e-07 30.2 0.1 0.16 12.2 0.0 3.5 3 0 0 3 3 3 2 AAA domain Fer4_10 PF13237.1 gi|302348244|ref|YP_003815882.1| - 8.1e-07 28.7 20.8 3e-05 23.7 0.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA PF00004.24 gi|302348244|ref|YP_003815882.1| - 2e-06 28.0 0.1 0.05 13.8 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4_7 PF12838.2 gi|302348244|ref|YP_003815882.1| - 3.6e-06 27.2 9.4 7.1e-06 26.3 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain MobB PF03205.9 gi|302348244|ref|YP_003815882.1| - 1.4e-05 24.8 0.0 0.013 15.2 0.0 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Fer4_21 PF14697.1 gi|302348244|ref|YP_003815882.1| - 1.5e-05 24.7 11.2 3e-05 23.8 7.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_23 PF13476.1 gi|302348244|ref|YP_003815882.1| - 3.2e-05 24.3 0.5 0.051 13.8 0.2 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|302348244|ref|YP_003815882.1| - 3.6e-05 23.8 0.1 0.011 15.7 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|302348244|ref|YP_003815882.1| - 3.6e-05 23.4 0.2 0.039 13.5 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_29 PF13555.1 gi|302348244|ref|YP_003815882.1| - 3.7e-05 23.1 0.3 0.34 10.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain DUF258 PF03193.11 gi|302348244|ref|YP_003815882.1| - 4.9e-05 22.5 0.8 0.22 10.6 0.0 3.0 3 0 0 3 3 2 2 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|302348244|ref|YP_003815882.1| - 6.2e-05 22.4 0.0 0.03 13.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|302348244|ref|YP_003815882.1| - 7e-05 22.5 0.2 0.026 14.2 0.0 2.6 2 0 0 2 2 2 1 NTPase RNA_helicase PF00910.17 gi|302348244|ref|YP_003815882.1| - 8.1e-05 22.7 0.0 0.34 11.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_15 PF13175.1 gi|302348244|ref|YP_003815882.1| - 0.00011 21.4 0.0 0.94 8.4 0.0 3.9 4 0 0 4 4 4 1 AAA ATPase domain Miro PF08477.8 gi|302348244|ref|YP_003815882.1| - 0.00011 22.6 0.0 0.33 11.4 0.0 2.5 2 0 0 2 2 2 2 Miro-like protein Fer4_16 PF13484.1 gi|302348244|ref|YP_003815882.1| - 0.00011 22.8 2.0 0.005 17.5 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain UPF0079 PF02367.12 gi|302348244|ref|YP_003815882.1| - 0.00029 20.4 0.1 0.18 11.4 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 SbcCD_C PF13558.1 gi|302348244|ref|YP_003815882.1| - 0.00032 20.5 0.2 2 8.4 0.0 3.2 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|302348244|ref|YP_003815882.1| - 0.00037 20.3 0.1 0.46 10.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|302348244|ref|YP_003815882.1| - 0.00045 20.2 0.1 0.36 10.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain Fer4_3 PF12798.2 gi|302348244|ref|YP_003815882.1| - 0.00075 19.8 5.0 0.00075 19.8 3.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|302348244|ref|YP_003815882.1| - 0.00098 19.2 2.8 0.00098 19.2 1.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|302348244|ref|YP_003815882.1| - 0.001 19.2 10.4 0.002 18.3 7.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain T2SE PF00437.15 gi|302348244|ref|YP_003815882.1| - 0.0025 16.7 0.0 0.45 9.3 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein Fer4_8 PF13183.1 gi|302348244|ref|YP_003815882.1| - 0.0031 17.5 7.2 0.0062 16.5 5.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.1 gi|302348244|ref|YP_003815882.1| - 0.0046 16.5 1.2 1.2 8.6 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|302348244|ref|YP_003815882.1| - 0.0064 16.3 0.3 0.94 9.3 0.0 2.8 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|302348244|ref|YP_003815882.1| - 0.0088 15.5 2.9 1.6 8.1 0.1 2.3 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|302348244|ref|YP_003815882.1| - 0.011 15.4 0.3 0.4 10.3 0.0 2.5 2 0 0 2 2 2 0 Archaeal ATPase VirE PF05272.6 gi|302348244|ref|YP_003815882.1| - 0.011 15.1 0.0 2.9 7.3 0.0 2.5 2 0 0 2 2 2 0 Virulence-associated protein E Rad17 PF03215.10 gi|302348244|ref|YP_003815882.1| - 0.014 14.0 0.0 1.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein ArgK PF03308.11 gi|302348244|ref|YP_003815882.1| - 0.024 13.4 1.0 3.1 6.5 0.1 2.2 2 0 0 2 2 2 0 ArgK protein MMR_HSR1 PF01926.18 gi|302348244|ref|YP_003815882.1| - 0.028 14.3 0.0 3 7.8 0.0 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase PRK PF00485.13 gi|302348244|ref|YP_003815882.1| - 0.047 13.2 0.0 0.75 9.3 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.1 gi|302348244|ref|YP_003815882.1| - 0.054 13.2 0.5 3.7 7.3 0.0 2.8 2 0 0 2 2 2 0 Part of AAA domain AAA_10 PF12846.2 gi|302348244|ref|YP_003815882.1| - 0.059 12.7 0.2 4 6.7 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain Fer4_17 PF13534.1 gi|302348244|ref|YP_003815882.1| - 0.063 13.6 6.9 0.11 12.8 0.8 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain KAP_NTPase PF07693.9 gi|302348244|ref|YP_003815882.1| - 0.064 12.2 0.0 2.3 7.1 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain NB-ARC PF00931.17 gi|302348244|ref|YP_003815882.1| - 0.1 11.4 2.1 3.5 6.4 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain RuvB_N PF05496.7 gi|302348244|ref|YP_003815882.1| - 0.11 11.5 0.2 10 5.0 0.0 2.7 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus Fer4_18 PF13746.1 gi|302348244|ref|YP_003815882.1| - 0.33 11.4 10.1 2.7 8.5 6.3 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|302348244|ref|YP_003815882.1| - 3.2 8.3 12.0 0.15 12.6 2.5 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain SpoU_methylase PF00588.14 gi|302348245|ref|YP_003815883.1| - 3e-27 95.2 0.0 4.1e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|302348245|ref|YP_003815883.1| - 0.00083 18.9 0.0 0.018 14.5 0.0 2.2 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase AraC_binding_2 PF14525.1 gi|302348245|ref|YP_003815883.1| - 0.12 11.9 1.4 1.4 8.4 0.0 2.1 2 0 0 2 2 2 0 AraC-binding-like domain SIS PF01380.17 gi|302348246|ref|YP_003815884.1| - 9.5e-15 54.3 0.0 1.9e-14 53.3 0.0 1.5 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|302348246|ref|YP_003815884.1| - 1.3e-13 50.7 1.8 2.2e-09 37.1 0.6 2.2 1 1 1 2 2 2 2 SIS domain RHH_1 PF01402.16 gi|302348249|ref|YP_003815887.1| - 0.017 14.9 0.4 0.045 13.6 0.2 1.9 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family MarR_2 PF12802.2 gi|302348249|ref|YP_003815887.1| - 0.024 14.2 0.2 0.27 10.9 0.1 2.3 2 1 0 2 2 2 0 MarR family HTH_6 PF01418.12 gi|302348249|ref|YP_003815887.1| - 0.29 10.9 3.0 0.22 11.2 0.9 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Methyltransf_26 PF13659.1 gi|302348250|ref|YP_003815888.1| - 4.4e-12 46.0 0.1 6.7e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|302348250|ref|YP_003815888.1| - 4.5e-10 39.1 0.0 5.9e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|302348250|ref|YP_003815888.1| - 2.1e-09 36.9 0.0 3e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|302348250|ref|YP_003815888.1| - 9.2e-09 35.8 0.1 2e-08 34.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302348250|ref|YP_003815888.1| - 2e-06 27.4 0.0 2.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|302348250|ref|YP_003815888.1| - 0.0056 17.1 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|302348250|ref|YP_003815888.1| - 0.011 15.4 0.0 0.02 14.6 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|302348250|ref|YP_003815888.1| - 0.015 15.7 0.0 0.027 14.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|302348250|ref|YP_003815888.1| - 0.017 15.4 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|302348251|ref|YP_003815889.1| - 9.3e-40 136.3 0.0 1.1e-39 136.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|302348251|ref|YP_003815889.1| - 0.00034 20.6 0.1 0.00061 19.8 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|302348251|ref|YP_003815889.1| - 0.0027 17.2 0.0 0.0046 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.7 gi|302348251|ref|YP_003815889.1| - 0.0066 15.3 0.0 0.0086 14.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_18 PF12847.2 gi|302348251|ref|YP_003815889.1| - 0.011 16.2 0.0 0.017 15.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|302348251|ref|YP_003815889.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|302348251|ref|YP_003815889.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DUF655 PF04919.7 gi|302348252|ref|YP_003815890.1| - 1.6e-56 190.8 0.7 4.7e-56 189.3 0.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|302348252|ref|YP_003815890.1| - 0.0033 17.4 0.1 0.011 15.7 0.0 1.8 1 1 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|302348252|ref|YP_003815890.1| - 0.066 13.1 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif Enkurin PF13864.1 gi|302348253|ref|YP_003815891.1| - 0.0035 17.5 2.0 0.006 16.7 1.4 1.3 1 0 0 1 1 1 1 Calmodulin-binding MRVI1 PF05781.7 gi|302348253|ref|YP_003815891.1| - 0.013 13.8 1.2 0.013 13.9 0.8 1.0 1 0 0 1 1 1 0 MRVI1 protein APG17 PF04108.7 gi|302348253|ref|YP_003815891.1| - 0.016 14.0 2.1 0.018 13.8 1.5 1.2 1 0 0 1 1 1 0 Autophagy protein Apg17 MIS13 PF08202.6 gi|302348253|ref|YP_003815891.1| - 0.031 13.3 0.7 0.032 13.3 0.5 1.1 1 0 0 1 1 1 0 Mis12-Mtw1 protein family MRP-S27 PF10037.4 gi|302348253|ref|YP_003815891.1| - 0.063 12.1 2.3 0.078 11.8 1.6 1.0 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S27 COG5 PF10392.4 gi|302348253|ref|YP_003815891.1| - 0.13 12.2 3.8 0.16 11.9 2.3 1.3 1 1 0 1 1 1 0 Golgi transport complex subunit 5 Zip PF02535.17 gi|302348253|ref|YP_003815891.1| - 1 8.2 3.7 1.1 8.1 2.6 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter PNPase PF03726.9 gi|302348253|ref|YP_003815891.1| - 1.3 9.3 6.4 4.2 7.6 2.3 2.3 1 1 0 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain Glyco_tranf_2_3 PF13641.1 gi|302348254|ref|YP_003815892.1| - 8.3e-16 58.4 0.0 1.2e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|302348254|ref|YP_003815892.1| - 2.1e-14 53.6 5.0 3.1e-14 53.1 3.4 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 TFIIS_C PF01096.13 gi|302348255|ref|YP_003815893.1| - 1.1e-20 72.9 12.2 9e-20 70.0 2.1 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|302348255|ref|YP_003815893.1| - 2.2e-08 33.6 8.7 3.4e-07 29.8 0.9 2.9 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|302348255|ref|YP_003815893.1| - 2e-07 30.7 10.5 0.00026 20.7 0.5 3.1 2 1 1 3 3 3 3 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|302348255|ref|YP_003815893.1| - 3.7e-07 29.1 11.3 0.063 12.5 0.1 4.2 4 0 0 4 4 4 3 zinc-ribbon domain DZR PF12773.2 gi|302348255|ref|YP_003815893.1| - 5.4e-07 29.3 5.5 0.00061 19.5 0.2 2.5 2 1 0 2 2 2 2 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|302348255|ref|YP_003815893.1| - 1.1e-06 27.7 8.5 0.0013 18.0 0.1 3.4 2 2 0 2 2 2 2 TFIIB zinc-binding DUF2387 PF09526.5 gi|302348255|ref|YP_003815893.1| - 1.4e-06 28.1 2.7 0.018 14.9 0.3 2.4 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|302348255|ref|YP_003815893.1| - 1.9e-06 27.3 9.3 0.39 10.3 0.1 4.2 4 0 0 4 4 4 2 zinc-ribbon domain UPF0547 PF10571.4 gi|302348255|ref|YP_003815893.1| - 2.1e-06 27.2 9.9 0.54 10.0 0.1 4.4 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|302348255|ref|YP_003815893.1| - 7.1e-06 25.5 7.4 0.011 15.3 0.5 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|302348255|ref|YP_003815893.1| - 9.8e-06 25.1 11.2 0.42 10.3 0.2 4.2 4 0 0 4 4 4 2 zinc-ribbon domain zf-TFIIB PF13453.1 gi|302348255|ref|YP_003815893.1| - 1.7e-05 23.9 9.8 0.00046 19.3 0.4 2.5 2 1 0 2 2 2 2 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|302348255|ref|YP_003815893.1| - 6.8e-05 22.2 19.2 0.31 10.5 0.7 4.1 3 1 0 3 3 3 2 zinc-ribbon domain IBR PF01485.16 gi|302348255|ref|YP_003815893.1| - 9.8e-05 22.1 3.5 0.021 14.7 0.4 3.0 3 0 0 3 3 3 1 IBR domain PhnA_Zn_Ribbon PF08274.7 gi|302348255|ref|YP_003815893.1| - 0.00019 21.1 3.9 0.13 12.0 1.2 3.4 2 2 0 2 2 2 1 PhnA Zinc-Ribbon zf-ISL3 PF14690.1 gi|302348255|ref|YP_003815893.1| - 0.00021 21.2 7.5 4.5 7.3 0.0 4.2 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|302348255|ref|YP_003815893.1| - 0.00037 19.9 13.2 0.058 12.9 3.8 4.1 3 1 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|302348255|ref|YP_003815893.1| - 0.00097 18.7 1.7 0.00097 18.7 1.2 2.7 3 0 0 3 3 2 1 Zinc finger found in FPG and IleRS Terminase_GpA PF05876.7 gi|302348255|ref|YP_003815893.1| - 0.0012 17.3 0.6 0.0012 17.3 0.4 1.9 2 0 0 2 2 2 1 Phage terminase large subunit (GpA) Zn-ribbon_8 PF09723.5 gi|302348255|ref|YP_003815893.1| - 0.0013 18.6 14.4 3 7.8 0.5 4.2 3 1 0 4 4 4 0 Zinc ribbon domain Elf1 PF05129.8 gi|302348255|ref|YP_003815893.1| - 0.0019 17.8 2.0 0.35 10.5 0.0 2.8 2 1 0 2 2 2 1 Transcription elongation factor Elf1 like Zn_ribbon_recom PF13408.1 gi|302348255|ref|YP_003815893.1| - 0.0093 16.2 10.7 0.41 10.9 1.6 2.9 2 2 0 2 2 2 2 Recombinase zinc beta ribbon domain zf-DNA_Pol PF08996.5 gi|302348255|ref|YP_003815893.1| - 0.01 15.2 0.9 0.33 10.2 0.0 2.2 2 1 0 2 2 2 0 DNA Polymerase alpha zinc finger Lar_restr_allev PF14354.1 gi|302348255|ref|YP_003815893.1| - 0.012 15.8 9.6 0.25 11.6 0.3 2.9 1 1 2 3 3 3 0 Restriction alleviation protein Lar Ribosomal_L32p PF01783.18 gi|302348255|ref|YP_003815893.1| - 0.019 15.1 3.8 4.7 7.4 0.6 3.8 3 1 0 3 3 3 0 Ribosomal L32p protein family HypA PF01155.14 gi|302348255|ref|YP_003815893.1| - 0.035 13.7 6.2 0.17 11.5 0.2 2.8 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|302348255|ref|YP_003815893.1| - 0.047 13.5 13.2 8.3 6.3 0.1 4.2 4 0 0 4 4 4 0 Rubredoxin DUF2082 PF09855.4 gi|302348255|ref|YP_003815893.1| - 0.08 12.7 8.5 13 5.7 0.0 3.8 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-tcix PF14952.1 gi|302348255|ref|YP_003815893.1| - 0.1 11.9 13.4 2.7 7.3 0.2 4.1 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding DRP PF06044.7 gi|302348255|ref|YP_003815893.1| - 0.12 11.4 0.6 4.7 6.1 0.0 2.0 2 0 0 2 2 2 0 Dam-replacing family DUF1178 PF06676.6 gi|302348255|ref|YP_003815893.1| - 0.16 12.1 2.2 0.39 10.9 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) DUF2072 PF09845.4 gi|302348255|ref|YP_003815893.1| - 0.16 11.9 1.9 4.4 7.2 0.0 3.0 3 0 0 3 3 3 0 Zn-ribbon containing protein (DUF2072) Mu-like_Com PF10122.4 gi|302348255|ref|YP_003815893.1| - 0.23 10.5 15.1 0.68 9.0 0.5 3.8 2 2 2 4 4 4 0 Mu-like prophage protein Com TerY-C PF15616.1 gi|302348255|ref|YP_003815893.1| - 0.26 11.2 5.4 4.4 7.2 0.2 2.6 2 1 0 2 2 2 0 TerY-C metal binding domain Zn_Tnp_IS1 PF03811.8 gi|302348255|ref|YP_003815893.1| - 0.26 10.7 0.0 0.26 10.7 0.0 4.0 4 0 0 4 4 4 0 InsA N-terminal domain Nudix_N_2 PF14803.1 gi|302348255|ref|YP_003815893.1| - 0.35 10.6 16.0 0.96 9.1 3.2 3.9 2 2 0 2 2 2 0 Nudix N-terminal DUF3797 PF12677.2 gi|302348255|ref|YP_003815893.1| - 0.37 10.4 14.0 0.82 9.3 3.5 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF3797) zf-C2H2_4 PF13894.1 gi|302348255|ref|YP_003815893.1| - 0.37 11.2 8.7 20 5.8 0.0 4.1 4 0 0 4 4 4 0 C2H2-type zinc finger zf-C4_Topoisom PF01396.14 gi|302348255|ref|YP_003815893.1| - 0.41 10.1 12.3 6.6 6.3 0.0 3.7 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger PolC_DP2 PF03833.8 gi|302348255|ref|YP_003815893.1| - 0.47 8.0 1.8 1.7 6.2 0.1 1.9 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Ogr_Delta PF04606.7 gi|302348255|ref|YP_003815893.1| - 0.55 9.9 13.2 15 5.3 0.1 4.1 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger Cys_rich_CPCC PF14206.1 gi|302348255|ref|YP_003815893.1| - 0.56 9.8 3.5 1.5 8.4 0.1 2.8 3 0 0 3 3 3 0 Cysteine-rich CPCC DUF164 PF02591.10 gi|302348255|ref|YP_003815893.1| - 0.56 10.0 6.6 22 4.9 0.1 3.8 4 0 0 4 4 4 0 Putative zinc ribbon domain zf-IS66 PF13005.2 gi|302348255|ref|YP_003815893.1| - 0.56 10.2 9.2 13 5.8 0.1 4.3 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-HIT PF04438.11 gi|302348255|ref|YP_003815893.1| - 0.57 9.8 14.2 7.1 6.3 0.1 4.1 4 0 0 4 4 4 0 HIT zinc finger Baculo_LEF5_C PF11792.3 gi|302348255|ref|YP_003815893.1| - 0.6 9.5 0.0 0.6 9.5 0.0 3.0 4 0 0 4 4 3 0 Baculoviridae late expression factor 5 C-terminal domain YhfH PF14149.1 gi|302348255|ref|YP_003815893.1| - 0.68 9.7 7.8 28 4.6 0.0 4.1 4 0 0 4 4 4 0 YhfH-like protein zf-Mss51 PF13824.1 gi|302348255|ref|YP_003815893.1| - 0.77 9.6 9.8 5 7.0 1.2 3.0 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS91 PF14319.1 gi|302348255|ref|YP_003815893.1| - 1.1 8.8 9.9 3.3 7.2 0.3 3.6 2 2 2 4 4 4 0 Transposase zinc-binding domain RecR PF02132.10 gi|302348255|ref|YP_003815893.1| - 1.1 8.7 9.1 2.3 7.7 0.0 3.5 4 0 0 4 4 4 0 RecR protein zf-Sec23_Sec24 PF04810.10 gi|302348255|ref|YP_003815893.1| - 1.2 8.7 9.6 1.1 8.8 0.4 3.4 3 1 0 3 3 3 0 Sec23/Sec24 zinc finger DUF2296 PF10058.4 gi|302348255|ref|YP_003815893.1| - 1.4 8.7 10.3 15 5.4 1.3 3.7 3 1 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) zf-LITAF-like PF10601.4 gi|302348255|ref|YP_003815893.1| - 1.5 8.7 5.4 31 4.5 0.0 3.6 4 0 0 4 4 3 0 LITAF-like zinc ribbon domain FdhE PF04216.7 gi|302348255|ref|YP_003815893.1| - 1.6 8.3 9.3 0.066 12.9 0.7 2.2 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation RNHCP PF12647.2 gi|302348255|ref|YP_003815893.1| - 1.9 8.3 6.7 1.6 8.6 0.1 2.9 2 1 1 3 3 3 0 RNHCP domain zf-RING_4 PF14570.1 gi|302348255|ref|YP_003815893.1| - 2 8.0 8.4 26 4.4 0.8 3.3 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-ZPR1 PF03367.8 gi|302348255|ref|YP_003815893.1| - 2.1 7.4 4.8 16 4.6 0.0 3.0 4 0 0 4 4 3 0 ZPR1 zinc-finger domain DUF1936 PF09151.5 gi|302348255|ref|YP_003815893.1| - 2.1 7.8 12.0 6.1 6.4 0.2 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF1936) DUF329 PF03884.9 gi|302348255|ref|YP_003815893.1| - 2.5 7.7 9.3 8.2 6.0 0.0 3.6 3 1 1 4 4 4 0 Domain of unknown function (DUF329) FYDLN_acid PF09538.5 gi|302348255|ref|YP_003815893.1| - 2.5 8.7 6.6 8.2 7.0 0.5 3.4 2 2 1 3 3 2 0 Protein of unknown function (FYDLN_acid) DNA_RNApol_7kD PF03604.8 gi|302348255|ref|YP_003815893.1| - 2.6 7.5 13.7 11 5.5 0.2 3.7 3 1 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit C1_4 PF07975.7 gi|302348255|ref|YP_003815893.1| - 2.6 8.0 6.9 13 5.9 0.1 3.2 2 2 1 3 3 3 0 TFIIH C1-like domain DUF35_N PF12172.3 gi|302348255|ref|YP_003815893.1| - 2.9 7.9 13.6 21 5.2 0.2 4.2 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-MYND PF01753.13 gi|302348255|ref|YP_003815893.1| - 3.5 7.5 6.6 32 4.4 1.2 2.9 2 2 0 2 2 2 0 MYND finger A2L_zn_ribbon PF08792.5 gi|302348255|ref|YP_003815893.1| - 3.8 7.0 12.6 3.7 7.1 0.3 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-H2C2_2 PF13465.1 gi|302348255|ref|YP_003815893.1| - 4.5 7.7 14.4 4.4 7.7 0.4 3.7 4 1 0 4 4 3 0 Zinc-finger double domain CpXC PF14353.1 gi|302348255|ref|YP_003815893.1| - 4.7 7.1 8.8 5.4 6.9 0.0 3.6 2 1 2 4 4 4 0 CpXC protein Ribosomal_S27e PF01667.12 gi|302348255|ref|YP_003815893.1| - 5.5 6.6 8.8 11 5.6 0.9 3.6 2 2 1 3 3 3 0 Ribosomal protein S27 Opy2 PF09463.5 gi|302348255|ref|YP_003815893.1| - 9.1 6.4 8.1 21 5.3 0.0 3.7 4 0 0 4 4 4 0 Opy2 protein GFA PF04828.9 gi|302348255|ref|YP_003815893.1| - 9.2 6.2 10.8 22 5.0 1.6 3.5 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme DUF1610 PF07754.6 gi|302348255|ref|YP_003815893.1| - 9.6 6.4 25.4 0.22 11.6 1.6 4.2 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) DHH PF01368.15 gi|302348256|ref|YP_003815894.1| - 3e-05 23.7 0.0 6.4e-05 22.6 0.0 1.5 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|302348256|ref|YP_003815894.1| - 0.019 14.6 0.4 0.067 12.8 0.3 2.0 1 0 0 1 1 1 0 DHHA1 domain DUF429 PF04250.8 gi|302348257|ref|YP_003815895.1| - 6e-26 90.9 0.0 7.9e-26 90.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF429) tRNA-synt_2 PF00152.15 gi|302348258|ref|YP_003815896.1| - 4.1e-86 288.7 0.4 5.6e-86 288.3 0.3 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|302348258|ref|YP_003815896.1| - 4e-12 45.8 0.6 6.8e-12 45.0 0.4 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|302348258|ref|YP_003815896.1| - 0.0054 15.9 1.5 1.1 8.3 0.3 3.6 3 1 1 4 4 4 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|302348258|ref|YP_003815896.1| - 0.04 13.4 0.1 6.8 6.2 0.0 2.5 2 1 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) DUF4301 PF14134.1 gi|302348258|ref|YP_003815896.1| - 0.077 11.5 0.0 0.16 10.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4301) CoA_trans PF01144.18 gi|302348259|ref|YP_003815897.1| - 2.6e-26 92.1 0.2 3.2e-26 91.8 0.1 1.1 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hydro PF02550.10 gi|302348259|ref|YP_003815897.1| - 0.076 12.7 0.0 0.15 11.7 0.0 1.5 2 0 0 2 2 2 0 Acetyl-CoA hydrolase/transferase N-terminal domain CoA_trans PF01144.18 gi|302348260|ref|YP_003815898.1| - 3.8e-13 49.1 0.0 7.5e-13 48.1 0.0 1.5 1 1 0 1 1 1 1 Coenzyme A transferase Aldose_epim PF01263.15 gi|302348261|ref|YP_003815899.1| - 2.4e-31 108.9 0.0 4.2e-31 108.1 0.0 1.3 1 1 0 1 1 1 1 Aldose 1-epimerase Radical_SAM PF04055.16 gi|302348262|ref|YP_003815900.1| - 2.1e-16 60.5 0.0 3.6e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0126 PF03458.8 gi|302348263|ref|YP_003815901.1| - 5.1e-40 134.9 19.7 2.6e-21 75.0 5.5 2.2 2 0 0 2 2 2 2 UPF0126 domain B12D PF06522.6 gi|302348263|ref|YP_003815901.1| - 0.058 13.1 0.2 2.2 8.0 0.0 2.7 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit TRIC PF05197.8 gi|302348263|ref|YP_003815901.1| - 0.1 12.0 0.5 1 8.7 0.1 2.1 2 0 0 2 2 2 0 TRIC channel PhoU PF01895.14 gi|302348264|ref|YP_003815902.1| - 1.1e-14 54.5 1.7 1.1e-14 54.5 1.2 2.3 3 0 0 3 3 3 1 PhoU domain Antitoxin-MazE PF04014.13 gi|302348264|ref|YP_003815902.1| - 2.3e-11 43.1 0.1 5.7e-11 41.8 0.1 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Amidase PF01425.16 gi|302348266|ref|YP_003815904.1| - 4.7e-127 424.4 0.0 5.4e-127 424.3 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.10 gi|302348267|ref|YP_003815905.1| - 7.4e-91 303.9 0.0 1.2e-90 303.3 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|302348267|ref|YP_003815905.1| - 3.7e-17 62.4 0.0 5.4e-17 61.8 0.0 1.3 1 0 0 1 1 1 1 GatB domain Phosphodiest PF01663.17 gi|302348268|ref|YP_003815906.1| - 4.7e-24 85.3 0.3 1.4e-23 83.8 0.2 1.7 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|302348268|ref|YP_003815906.1| - 0.00012 21.5 0.0 0.0002 20.8 0.0 1.3 1 0 0 1 1 1 1 Metalloenzyme superfamily PglZ PF08665.7 gi|302348268|ref|YP_003815906.1| - 0.019 14.6 0.1 0.17 11.5 0.0 2.1 2 0 0 2 2 2 0 PglZ domain DUF4010 PF13194.1 gi|302348269|ref|YP_003815907.1| - 2.7e-20 72.5 26.2 2.7e-20 72.5 18.2 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|302348269|ref|YP_003815907.1| - 2.1e-06 27.6 12.9 2.1e-06 27.6 9.0 4.0 3 1 0 3 3 3 1 MgtC family DUF3377 PF11857.3 gi|302348269|ref|YP_003815907.1| - 2.6 7.7 4.7 1.3 8.6 0.4 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3377) Rad51 PF08423.6 gi|302348270|ref|YP_003815908.1| - 6.1e-96 320.2 0.0 7.8e-96 319.9 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|302348270|ref|YP_003815908.1| - 2e-16 59.9 0.1 3.3e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|302348270|ref|YP_003815908.1| - 1.1e-14 54.2 0.1 1.4e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|302348270|ref|YP_003815908.1| - 1.2e-12 47.4 0.0 1.8e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|302348270|ref|YP_003815908.1| - 1.5e-12 47.4 0.3 4.6e-12 45.9 0.0 1.9 2 0 0 2 2 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|302348270|ref|YP_003815908.1| - 6.6e-06 25.9 0.2 3.6e-05 23.5 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|302348270|ref|YP_003815908.1| - 2.3e-05 23.8 1.0 0.00059 19.3 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|302348270|ref|YP_003815908.1| - 0.00035 20.4 0.0 0.00079 19.3 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|302348270|ref|YP_003815908.1| - 0.00053 19.4 0.0 0.002 17.6 0.0 2.0 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda AAA_22 PF13401.1 gi|302348270|ref|YP_003815908.1| - 0.00081 19.5 0.0 0.0022 18.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain IMS_HHH PF11798.3 gi|302348270|ref|YP_003815908.1| - 0.0038 17.1 0.0 0.01 15.8 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif DUF4332 PF14229.1 gi|302348270|ref|YP_003815908.1| - 0.0081 16.1 0.1 0.036 14.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) AAA_18 PF13238.1 gi|302348270|ref|YP_003815908.1| - 0.013 15.8 0.1 0.035 14.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.1 gi|302348270|ref|YP_003815908.1| - 0.016 14.7 0.1 0.089 12.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain HHH_3 PF12836.2 gi|302348270|ref|YP_003815908.1| - 0.036 14.0 0.0 16 5.4 0.0 2.5 1 1 0 2 2 2 0 Helix-hairpin-helix motif HTH_23 PF13384.1 gi|302348270|ref|YP_003815908.1| - 0.04 13.5 0.1 0.31 10.7 0.0 2.6 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r3 PF04539.11 gi|302348270|ref|YP_003815908.1| - 0.053 13.4 0.1 0.96 9.3 0.0 2.7 3 0 0 3 3 2 0 Sigma-70 region 3 5_3_exonuc PF01367.15 gi|302348270|ref|YP_003815908.1| - 0.078 13.2 0.1 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold MarR_2 PF12802.2 gi|302348270|ref|YP_003815908.1| - 0.084 12.5 0.0 0.65 9.7 0.0 2.5 2 1 0 2 2 2 0 MarR family Peptidase_A24 PF01478.13 gi|302348271|ref|YP_003815909.1| - 0.00022 21.3 7.9 0.00022 21.3 5.4 1.6 2 0 0 2 2 2 1 Type IV leader peptidase family HIT PF01230.18 gi|302348272|ref|YP_003815910.1| - 1.5e-12 47.8 0.0 2.8e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|302348272|ref|YP_003815910.1| - 2.9e-06 27.5 0.0 4.8e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|302348272|ref|YP_003815910.1| - 7e-05 22.4 0.0 0.00011 21.8 0.0 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DHHA1 PF02272.14 gi|302348273|ref|YP_003815911.1| - 2.9e-07 30.1 0.8 6.5e-07 28.9 0.5 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|302348273|ref|YP_003815911.1| - 7.4e-07 28.9 0.0 1.1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 DHH family Glyco_hydro_49 PF03718.8 gi|302348273|ref|YP_003815911.1| - 0.025 12.6 0.0 0.035 12.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 49 Ribosomal_L38e PF01781.13 gi|302348274|ref|YP_003815912.1| - 0.00011 21.9 3.1 0.00011 21.9 2.2 1.7 1 1 0 1 1 1 1 Ribosomal L38e protein family DNA_pol3_a_NII PF11490.3 gi|302348274|ref|YP_003815912.1| - 0.02 14.4 4.2 0.02 14.4 2.9 2.1 2 0 0 2 2 2 0 DNA polymerase III polC-type N-terminus II Plasmodium_Vir PF05795.6 gi|302348274|ref|YP_003815912.1| - 0.082 12.0 3.9 0.094 11.9 2.7 1.1 1 0 0 1 1 1 0 Plasmodium vivax Vir protein Toxin_55 PF15606.1 gi|302348274|ref|YP_003815912.1| - 0.28 11.1 4.5 0.57 10.1 0.0 2.7 2 1 1 3 3 3 0 Putative toxin 55 Suf PF05843.9 gi|302348274|ref|YP_003815912.1| - 0.28 10.8 7.6 0.31 10.7 5.3 1.0 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) CMV_1a PF12467.3 gi|302348274|ref|YP_003815912.1| - 0.83 9.9 8.8 1.3 9.3 6.1 1.3 1 0 0 1 1 1 0 Cucumber mosaic virus 1a protein family U79_P34 PF03064.11 gi|302348274|ref|YP_003815912.1| - 1.1 8.7 7.5 1.4 8.4 5.2 1.1 1 0 0 1 1 1 0 HSV U79 / HCMV P34 Ada3 PF10198.4 gi|302348274|ref|YP_003815912.1| - 1.5 8.5 9.6 0.11 12.2 3.4 1.6 2 0 0 2 2 2 0 Histone acetyltransferases subunit 3 DUF3886 PF13025.1 gi|302348274|ref|YP_003815912.1| - 3.2 7.7 13.6 0.12 12.3 4.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3886) TraV PF09676.5 gi|302348274|ref|YP_003815912.1| - 4.3 8.0 9.3 7 7.3 6.5 1.3 1 0 0 1 1 1 0 Type IV conjugative transfer system lipoprotein (TraV) Spore_coat_CotO PF14153.1 gi|302348274|ref|YP_003815912.1| - 5.5 6.3 12.3 6.6 6.1 8.5 1.2 1 0 0 1 1 1 0 Spore coat protein CotO ABC_membrane PF00664.18 gi|302348275|ref|YP_003815913.1| - 0.089 12.1 3.4 0.69 9.2 0.3 2.5 2 1 0 2 2 2 0 ABC transporter transmembrane region ABC_tran PF00005.22 gi|302348276|ref|YP_003815914.1| - 1.5e-35 122.4 0.0 3e-35 121.4 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|302348276|ref|YP_003815914.1| - 1.9e-09 37.9 0.0 4e-05 23.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|302348276|ref|YP_003815914.1| - 5.6e-07 28.9 0.0 0.0039 16.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|302348276|ref|YP_003815914.1| - 1e-05 25.9 0.0 2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|302348276|ref|YP_003815914.1| - 4.7e-05 23.4 2.0 0.00054 19.9 1.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|302348276|ref|YP_003815914.1| - 0.0016 17.7 0.2 0.32 10.2 0.0 2.5 2 1 1 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|302348276|ref|YP_003815914.1| - 0.0018 18.4 0.2 0.0083 16.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|302348276|ref|YP_003815914.1| - 0.008 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_29 PF13555.1 gi|302348276|ref|YP_003815914.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|302348276|ref|YP_003815914.1| - 0.014 15.0 0.1 0.044 13.5 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain DUF258 PF03193.11 gi|302348276|ref|YP_003815914.1| - 0.019 14.1 0.0 0.03 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|302348276|ref|YP_003815914.1| - 0.02 15.3 0.1 0.055 13.9 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein AAA_10 PF12846.2 gi|302348276|ref|YP_003815914.1| - 0.021 14.2 0.3 0.066 12.6 0.1 1.8 1 1 1 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|302348276|ref|YP_003815914.1| - 0.026 14.8 0.4 0.087 13.1 0.3 2.1 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|302348276|ref|YP_003815914.1| - 0.029 13.8 0.1 0.052 12.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|302348276|ref|YP_003815914.1| - 0.031 14.1 1.5 0.22 11.4 1.0 2.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|302348276|ref|YP_003815914.1| - 0.039 13.6 0.2 0.084 12.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.1 gi|302348276|ref|YP_003815914.1| - 0.045 13.6 0.0 0.23 11.4 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit LeuA_dimer PF08502.5 gi|302348276|ref|YP_003815914.1| - 0.056 13.2 0.1 0.13 12.0 0.0 1.6 2 0 0 2 2 2 0 LeuA allosteric (dimerisation) domain AAA_25 PF13481.1 gi|302348276|ref|YP_003815914.1| - 0.06 12.7 0.1 0.33 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|302348276|ref|YP_003815914.1| - 0.065 13.1 0.0 0.56 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|302348276|ref|YP_003815914.1| - 0.13 12.2 0.1 0.22 11.5 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|302348276|ref|YP_003815914.1| - 0.13 11.9 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B tRNA_m1G_MT PF01746.16 gi|302348277|ref|YP_003815915.1| - 1.6e-23 83.2 0.0 2.2e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase RNA_Me_trans PF04252.8 gi|302348277|ref|YP_003815915.1| - 2.4e-05 23.8 0.0 4.2e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase DUF3288 PF11691.3 gi|302348277|ref|YP_003815915.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3288) RNA_replicase_B PF03431.8 gi|302348277|ref|YP_003815915.1| - 0.13 10.4 0.0 0.18 9.9 0.0 1.1 1 0 0 1 1 1 0 RNA replicase, beta-chain RNase_HII PF01351.13 gi|302348278|ref|YP_003815916.1| - 3.5e-37 127.9 0.0 4.2e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII DUF59 PF01883.14 gi|302348279|ref|YP_003815917.1| - 2.8e-14 52.8 0.1 4.3e-14 52.2 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF59 YqhG PF11079.3 gi|302348279|ref|YP_003815917.1| - 0.086 11.6 0.0 0.15 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function MoCF_biosynth PF00994.19 gi|302348281|ref|YP_003815919.1| - 3.3e-34 117.3 0.0 4.6e-34 116.8 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain Pox_I5 PF04713.7 gi|302348282|ref|YP_003815920.1| - 0.15 11.7 6.3 0.25 11.0 4.4 1.5 1 1 0 1 1 1 0 Poxvirus protein I5 ABC2_membrane_4 PF12730.2 gi|302348282|ref|YP_003815920.1| - 1.4 8.0 9.4 1.7 7.7 6.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4282 PF14110.1 gi|302348282|ref|YP_003815920.1| - 5.2 7.3 10.6 11 6.2 7.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) ATP-synt_D PF01813.12 gi|302348283|ref|YP_003815921.1| - 2.2e-45 154.6 2.2 2.5e-45 154.4 1.5 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF1351 PF07083.6 gi|302348283|ref|YP_003815921.1| - 0.078 12.5 0.1 0.17 11.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1351) eRF1_3 PF03465.10 gi|302348284|ref|YP_003815922.1| - 1.4e-18 67.1 0.0 5e-17 62.1 0.0 2.3 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|302348284|ref|YP_003815922.1| - 2.2e-16 59.6 0.0 5.4e-16 58.3 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|302348284|ref|YP_003815922.1| - 7e-10 39.3 0.0 1.1e-09 38.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 Inositol_P PF00459.20 gi|302348285|ref|YP_003815923.1| - 6.2e-27 94.5 0.0 7.3e-27 94.3 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|302348285|ref|YP_003815923.1| - 0.001 17.9 0.2 0.0018 17.1 0.0 1.5 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase MFS_1 PF07690.11 gi|302348286|ref|YP_003815924.1| - 2.3e-12 46.2 49.2 1.1e-11 44.0 26.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily PIRT PF15099.1 gi|302348286|ref|YP_003815924.1| - 3.9 6.7 13.4 0.12 11.6 2.9 2.8 3 0 0 3 3 3 0 Phosphoinositide-interacting protein family Glycos_transf_1 PF00534.15 gi|302348287|ref|YP_003815925.1| - 1.9e-21 76.2 0.0 3.5e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302348287|ref|YP_003815925.1| - 1.6e-15 57.4 0.1 2.8e-15 56.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|302348287|ref|YP_003815925.1| - 3e-10 40.2 0.0 5.9e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|302348287|ref|YP_003815925.1| - 0.00014 22.0 1.8 0.0018 18.4 0.4 2.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|302348287|ref|YP_003815925.1| - 0.00017 21.3 0.2 0.0012 18.5 0.0 2.5 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Epimerase PF01370.16 gi|302348288|ref|YP_003815926.1| - 4.2e-19 68.9 0.0 1.9e-18 66.7 0.0 1.9 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|302348288|ref|YP_003815926.1| - 1e-05 24.6 0.0 1.9e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|302348288|ref|YP_003815926.1| - 0.0026 17.7 0.0 0.0061 16.4 0.0 1.7 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|302348288|ref|YP_003815926.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 KR domain RmlD_sub_bind PF04321.12 gi|302348288|ref|YP_003815926.1| - 0.018 13.9 0.0 0.1 11.4 0.0 2.0 1 1 0 1 1 1 0 RmlD substrate binding domain UDPG_MGDP_dh_N PF03721.9 gi|302348288|ref|YP_003815926.1| - 0.047 13.0 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HTH_45 PF14947.1 gi|302348289|ref|YP_003815927.1| - 1e-15 57.3 0.0 1.1e-15 57.1 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|302348289|ref|YP_003815927.1| - 0.002 17.8 0.0 0.0037 16.9 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.1 gi|302348289|ref|YP_003815927.1| - 0.0023 17.5 0.0 0.0024 17.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Rrf2 PF02082.15 gi|302348289|ref|YP_003815927.1| - 0.027 14.5 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator DUF3116 PF11313.3 gi|302348289|ref|YP_003815927.1| - 0.058 13.0 0.1 0.13 11.9 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3116) Cdc6_C PF09079.6 gi|302348289|ref|YP_003815927.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.6 1 1 0 1 1 1 0 CDC6, C terminal S10_plectin PF03501.10 gi|302348289|ref|YP_003815927.1| - 0.11 12.4 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Plectin/S10 domain Put_DNA-bind_N PF06971.8 gi|302348289|ref|YP_003815927.1| - 0.11 12.2 0.3 0.68 9.7 0.0 2.1 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus PfkB PF00294.19 gi|302348291|ref|YP_003815929.1| - 8.2e-06 25.1 0.0 1.2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PsbQ PF05757.6 gi|302348291|ref|YP_003815929.1| - 0.069 12.5 0.0 0.1 12.0 0.0 1.1 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) TrkA_N PF02254.13 gi|302348292|ref|YP_003815930.1| - 1.1e-16 60.8 0.7 2.3e-16 59.8 0.5 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|302348292|ref|YP_003815930.1| - 3.4e-09 36.1 0.1 2.5e-08 33.3 0.0 2.4 2 0 0 2 2 2 1 TrkA-C domain Hydrolase PF00702.21 gi|302348292|ref|YP_003815930.1| - 0.029 14.7 0.1 0.038 14.3 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Glyco_trans_4_4 PF13579.1 gi|302348292|ref|YP_003815930.1| - 0.061 13.4 0.8 0.12 12.5 0.6 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Ion_trans_2 PF07885.11 gi|302348292|ref|YP_003815930.1| - 0.27 10.9 8.9 0.5 10.1 6.2 1.4 1 0 0 1 1 1 0 Ion channel TENA_THI-4 PF03070.11 gi|302348293|ref|YP_003815931.1| - 6.6e-30 104.4 0.1 7.7e-30 104.2 0.1 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family HEAT_2 PF13646.1 gi|302348293|ref|YP_003815931.1| - 0.089 13.0 0.2 0.38 11.0 0.0 2.1 2 1 0 2 2 2 0 HEAT repeats NADPH_Ox PF08414.5 gi|302348293|ref|YP_003815931.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Respiratory burst NADPH oxidase MFS_1 PF07690.11 gi|302348294|ref|YP_003815932.1| - 1.2e-22 80.1 55.2 1.2e-18 67.0 18.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DNA_binding_1 PF01035.15 gi|302348295|ref|YP_003815933.1| - 1.6e-28 98.2 0.0 1.9e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_28 PF13518.1 gi|302348295|ref|YP_003815933.1| - 0.00011 22.1 0.0 0.00019 21.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|302348295|ref|YP_003815933.1| - 0.00013 21.4 0.1 0.00024 20.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|302348295|ref|YP_003815933.1| - 0.00031 20.1 0.0 0.00064 19.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|302348295|ref|YP_003815933.1| - 0.00038 19.5 0.0 0.00068 18.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.1 gi|302348295|ref|YP_003815933.1| - 0.00062 19.2 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|302348295|ref|YP_003815933.1| - 0.00098 18.4 0.0 0.0015 17.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|302348295|ref|YP_003815933.1| - 0.0013 18.2 0.2 0.0023 17.4 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|302348295|ref|YP_003815933.1| - 0.021 14.4 0.4 0.039 13.5 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_8 PF02954.14 gi|302348295|ref|YP_003815933.1| - 0.026 14.0 0.2 0.045 13.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.11 gi|302348295|ref|YP_003815933.1| - 0.051 12.8 0.0 0.084 12.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_17 PF12728.2 gi|302348295|ref|YP_003815933.1| - 0.066 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|302348295|ref|YP_003815933.1| - 0.07 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.1 gi|302348295|ref|YP_003815933.1| - 0.085 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF1641 PF07849.6 gi|302348296|ref|YP_003815934.1| - 8.7e-10 38.0 0.2 6.6e-09 35.2 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) Fer4_15 PF13459.1 gi|302348297|ref|YP_003815935.1| - 2.8e-16 59.8 3.8 3.2e-16 59.6 2.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|302348297|ref|YP_003815935.1| - 3.9e-16 59.1 3.1 5.7e-16 58.6 2.2 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|302348297|ref|YP_003815935.1| - 0.014 15.6 0.7 0.024 14.8 0.5 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|302348297|ref|YP_003815935.1| - 0.36 10.7 6.8 1.2 9.1 1.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|302348297|ref|YP_003815935.1| - 2.5 7.8 6.3 2.1 8.1 0.5 2.5 3 0 0 3 3 3 0 4Fe-4S binding domain Sod_Fe_C PF02777.13 gi|302348298|ref|YP_003815936.1| - 4.7e-39 132.4 0.1 7.2e-39 131.8 0.1 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|302348298|ref|YP_003815936.1| - 1.5e-29 102.1 1.5 2.3e-29 101.4 0.5 1.7 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain ABC_tran PF00005.22 gi|302348299|ref|YP_003815937.1| - 5.5e-22 78.5 0.0 7.7e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302348299|ref|YP_003815937.1| - 8.5e-20 71.8 0.0 2e-10 41.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|302348299|ref|YP_003815937.1| - 1.7e-11 43.8 0.0 6.6e-06 25.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|302348299|ref|YP_003815937.1| - 8.9e-10 38.1 0.0 0.00022 20.5 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|302348299|ref|YP_003815937.1| - 1.3e-06 28.8 0.1 2e-06 28.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|302348299|ref|YP_003815937.1| - 2.7e-06 27.5 0.0 1.4e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|302348299|ref|YP_003815937.1| - 5.8e-06 25.9 0.0 0.043 13.2 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_33 PF13671.1 gi|302348299|ref|YP_003815937.1| - 0.0005 19.9 0.0 0.011 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|302348299|ref|YP_003815937.1| - 0.00057 19.9 0.5 0.0013 18.7 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|302348299|ref|YP_003815937.1| - 0.00069 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|302348299|ref|YP_003815937.1| - 0.00087 18.7 0.0 0.0021 17.4 0.0 1.6 2 0 0 2 2 2 1 MutS domain V AAA_29 PF13555.1 gi|302348299|ref|YP_003815937.1| - 0.00098 18.5 0.1 0.0018 17.7 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|302348299|ref|YP_003815937.1| - 0.0019 18.1 0.1 0.0069 16.2 0.1 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|302348299|ref|YP_003815937.1| - 0.0027 17.4 0.1 0.0085 15.8 0.0 1.8 2 0 0 2 2 1 1 Part of AAA domain AAA_17 PF13207.1 gi|302348299|ref|YP_003815937.1| - 0.0029 18.4 0.0 0.0061 17.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|302348299|ref|YP_003815937.1| - 0.0033 17.6 0.0 0.0084 16.3 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|302348299|ref|YP_003815937.1| - 0.0045 16.5 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|302348299|ref|YP_003815937.1| - 0.0078 15.6 0.4 0.08 12.3 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|302348299|ref|YP_003815937.1| - 0.0079 15.6 0.7 0.086 12.2 0.5 2.1 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|302348299|ref|YP_003815937.1| - 0.0081 15.8 0.2 0.024 14.3 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|302348299|ref|YP_003815937.1| - 0.0086 15.8 0.0 0.03 14.0 0.0 1.8 2 0 0 2 2 2 1 NTPase NACHT PF05729.7 gi|302348299|ref|YP_003815937.1| - 0.009 15.6 0.2 0.013 15.1 0.2 1.5 1 1 0 1 1 1 1 NACHT domain ABC_ATPase PF09818.4 gi|302348299|ref|YP_003815937.1| - 0.013 14.1 1.1 0.052 12.1 0.1 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|302348299|ref|YP_003815937.1| - 0.017 14.3 0.1 0.026 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|302348299|ref|YP_003815937.1| - 0.018 14.5 0.1 0.032 13.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|302348299|ref|YP_003815937.1| - 0.018 14.7 0.1 0.21 11.2 0.2 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|302348299|ref|YP_003815937.1| - 0.026 13.9 0.1 0.049 13.1 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_13 PF13166.1 gi|302348299|ref|YP_003815937.1| - 0.032 12.7 0.0 0.23 9.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|302348299|ref|YP_003815937.1| - 0.036 13.1 0.0 0.073 12.1 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin Miro PF08477.8 gi|302348299|ref|YP_003815937.1| - 0.044 14.2 0.0 0.092 13.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AFG1_ATPase PF03969.11 gi|302348299|ref|YP_003815937.1| - 0.052 12.3 0.3 0.68 8.6 0.1 2.5 3 0 0 3 3 3 0 AFG1-like ATPase T2SE PF00437.15 gi|302348299|ref|YP_003815937.1| - 0.061 12.2 0.1 0.1 11.4 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|302348299|ref|YP_003815937.1| - 0.08 12.8 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain UPF0079 PF02367.12 gi|302348299|ref|YP_003815937.1| - 0.083 12.5 0.1 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|302348299|ref|YP_003815937.1| - 0.088 13.1 0.0 0.2 11.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain Arch_ATPase PF01637.13 gi|302348299|ref|YP_003815937.1| - 0.089 12.4 0.1 0.21 11.2 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase cobW PF02492.14 gi|302348299|ref|YP_003815937.1| - 0.1 12.0 0.4 0.16 11.3 0.3 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|302348299|ref|YP_003815937.1| - 0.1 11.7 0.2 0.38 9.8 0.1 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF3584 PF12128.3 gi|302348299|ref|YP_003815937.1| - 0.27 8.5 0.3 0.35 8.1 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FecCD PF01032.13 gi|302348300|ref|YP_003815938.1| - 1.6e-70 237.4 38.9 1.9e-70 237.1 27.0 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|302348301|ref|YP_003815939.1| - 1.3e-31 109.5 0.0 2e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Baculo_PEP_C PF04513.7 gi|302348301|ref|YP_003815939.1| - 0.0057 16.4 2.4 0.041 13.6 1.6 2.0 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus PsbN PF02468.10 gi|302348301|ref|YP_003815939.1| - 0.2 11.2 2.8 0.47 10.1 1.9 1.6 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) IF-2B PF01008.12 gi|302348302|ref|YP_003815940.1| - 1.5e-29 102.8 0.0 1.8e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF2250 PF10007.4 gi|302348303|ref|YP_003815941.1| - 0.00067 19.5 0.0 0.0021 17.9 0.0 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MS_channel PF00924.13 gi|302348304|ref|YP_003815942.1| - 1.5e-29 102.8 1.4 1.5e-29 102.8 1.0 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel MFS_1 PF07690.11 gi|302348305|ref|YP_003815943.1| - 3.4e-24 85.2 50.6 3.2e-14 52.4 16.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1158 PF06643.6 gi|302348305|ref|YP_003815943.1| - 0.09 13.1 1.3 2.5 8.4 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1158) TrmB PF01978.14 gi|302348306|ref|YP_003815944.1| - 4.5e-17 61.5 0.1 9.9e-17 60.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|302348306|ref|YP_003815944.1| - 0.0017 18.2 0.1 0.011 15.6 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|302348306|ref|YP_003815944.1| - 0.028 14.5 0.0 0.077 13.1 0.0 1.8 1 1 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.2 gi|302348306|ref|YP_003815944.1| - 0.032 13.8 0.0 0.068 12.8 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.1 gi|302348306|ref|YP_003815944.1| - 0.08 12.4 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Lactamase_B PF00753.22 gi|302348307|ref|YP_003815945.1| - 7.9e-24 84.3 2.5 1e-23 83.9 1.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|302348307|ref|YP_003815945.1| - 2.1e-06 27.3 0.0 3.7e-06 26.6 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|302348307|ref|YP_003815945.1| - 0.0003 20.5 0.2 0.00056 19.6 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain EamA PF00892.15 gi|302348308|ref|YP_003815946.1| - 6.3e-18 65.0 36.8 8.8e-10 38.7 8.9 2.4 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|302348308|ref|YP_003815946.1| - 2.8e-08 33.9 5.5 2.8e-08 33.9 3.8 3.3 2 1 0 2 2 2 1 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|302348308|ref|YP_003815946.1| - 0.0023 16.8 0.2 0.0023 16.8 0.1 2.1 1 1 1 2 2 2 1 Eukaryotic protein of unknown function (DUF914) TPT PF03151.11 gi|302348308|ref|YP_003815946.1| - 0.0077 15.8 2.0 0.0077 15.8 1.4 2.9 2 2 0 2 2 2 1 Triose-phosphate Transporter family UPF0147 PF03685.8 gi|302348309|ref|YP_003815947.1| - 1.1e-34 118.0 0.6 1.3e-34 117.9 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|302348309|ref|YP_003815947.1| - 0.0028 17.7 0.5 1.1 9.4 0.1 2.2 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0253) YCII PF03795.9 gi|302348310|ref|YP_003815948.1| - 0.012 15.7 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 YCII-related domain AMP-binding PF00501.23 gi|302348311|ref|YP_003815949.1| - 1.8e-86 290.1 0.0 2.2e-86 289.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|302348311|ref|YP_003815949.1| - 1.4e-13 51.5 0.0 4.3e-13 50.0 0.0 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HycI PF01750.13 gi|302348311|ref|YP_003815949.1| - 0.062 12.8 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase maturation protease Malic_M PF03949.10 gi|302348312|ref|YP_003815950.1| - 2.3e-60 204.3 0.6 2.8e-60 204.0 0.4 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|302348312|ref|YP_003815950.1| - 2.9e-22 79.1 0.0 1.5e-15 57.2 0.0 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain ELFV_dehydrog PF00208.16 gi|302348312|ref|YP_003815950.1| - 0.082 12.4 0.3 0.16 11.5 0.0 1.6 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Acetyltransf_1 PF00583.19 gi|302348313|ref|YP_003815951.1| - 1.2e-14 54.0 0.1 1.9e-14 53.4 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|302348313|ref|YP_003815951.1| - 2.8e-14 53.2 0.0 3.3e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|302348313|ref|YP_003815951.1| - 2.5e-09 37.1 0.0 3.6e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|302348313|ref|YP_003815951.1| - 3.3e-07 29.9 0.1 7.4e-07 28.8 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|302348313|ref|YP_003815951.1| - 3.9e-06 26.7 0.1 1e-05 25.4 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|302348313|ref|YP_003815951.1| - 5.6e-06 26.3 0.0 6.8e-06 26.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|302348313|ref|YP_003815951.1| - 7.2e-06 25.8 0.0 1.3e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|302348313|ref|YP_003815951.1| - 0.00097 19.0 0.0 0.0012 18.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|302348313|ref|YP_003815951.1| - 0.0041 16.6 0.0 0.0067 16.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|302348313|ref|YP_003815951.1| - 0.0082 15.8 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acyl-CoA_dh_C PF12806.2 gi|302348313|ref|YP_003815951.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Acetyl-CoA dehydrogenase C-terminal like Acetyltransf_1 PF00583.19 gi|302348314|ref|YP_003815952.1| - 5.3e-11 42.3 0.0 7.2e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|302348314|ref|YP_003815952.1| - 1.3e-10 41.3 0.0 1.6e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|302348314|ref|YP_003815952.1| - 2.3e-09 37.1 0.0 3.4e-09 36.6 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|302348314|ref|YP_003815952.1| - 1.3e-08 34.8 0.0 2e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|302348314|ref|YP_003815952.1| - 1e-06 28.7 0.0 1.3e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|302348314|ref|YP_003815952.1| - 1.9e-06 27.5 0.0 3.9e-06 26.5 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|302348314|ref|YP_003815952.1| - 6.7e-05 22.8 0.0 0.00012 22.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|302348314|ref|YP_003815952.1| - 0.0019 18.3 0.0 0.0023 18.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|302348314|ref|YP_003815952.1| - 0.0022 17.8 0.0 0.0037 17.1 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF552 PF04472.7 gi|302348314|ref|YP_003815952.1| - 0.011 15.6 2.2 1.7 8.5 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF552) DUF3749 PF12568.3 gi|302348314|ref|YP_003815952.1| - 0.054 13.0 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AstA PF04958.7 gi|302348314|ref|YP_003815952.1| - 0.062 11.7 0.0 0.56 8.5 0.0 1.9 2 0 0 2 2 2 0 Arginine N-succinyltransferase beta subunit Mec-17 PF05301.6 gi|302348314|ref|YP_003815952.1| - 0.065 13.1 0.0 0.11 12.3 0.0 1.4 1 1 0 1 1 1 0 Touch receptor neuron protein Mec-17 DUF4546 PF15079.1 gi|302348314|ref|YP_003815952.1| - 0.15 11.2 0.1 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4546) Fe_dep_repress PF01325.14 gi|302348315|ref|YP_003815953.1| - 9.3e-13 47.9 0.0 2.1e-12 46.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|302348315|ref|YP_003815953.1| - 6.5e-09 35.3 0.0 9.6e-09 34.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|302348315|ref|YP_003815953.1| - 8.2e-06 25.3 0.0 3.8e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|302348315|ref|YP_003815953.1| - 0.016 14.9 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|302348315|ref|YP_003815953.1| - 0.038 13.5 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|302348315|ref|YP_003815953.1| - 0.039 13.3 0.0 0.07 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|302348315|ref|YP_003815953.1| - 0.066 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 MarR family RHH_1 PF01402.16 gi|302348316|ref|YP_003815954.1| - 2.2e-07 30.4 0.1 4.2e-07 29.5 0.1 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|302348316|ref|YP_003815954.1| - 3.8e-07 29.7 0.0 5.8e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain NikR_C PF08753.6 gi|302348316|ref|YP_003815954.1| - 4.8e-05 23.1 0.0 8.7e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain DUF684 PF05075.9 gi|302348316|ref|YP_003815954.1| - 0.006 15.2 0.0 0.0068 15.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF684) tRNA-synt_1b PF00579.20 gi|302348317|ref|YP_003815955.1| - 1.3e-41 142.6 0.0 1.5e-41 142.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) EF-hand_like PF09279.6 gi|302348317|ref|YP_003815955.1| - 0.03 14.3 0.0 0.061 13.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like MarR_2 PF12802.2 gi|302348318|ref|YP_003815956.1| - 1.6e-10 40.4 0.1 2.5e-09 36.6 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|302348318|ref|YP_003815956.1| - 5.1e-09 35.8 0.0 1.4e-08 34.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|302348318|ref|YP_003815956.1| - 3.3e-08 32.7 0.6 6.6e-08 31.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|302348318|ref|YP_003815956.1| - 9.9e-07 28.2 0.1 5.3e-06 25.8 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|302348318|ref|YP_003815956.1| - 1.7e-06 27.6 0.0 4.2e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|302348318|ref|YP_003815956.1| - 1.3e-05 24.8 0.3 0.00014 21.4 0.0 2.6 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|302348318|ref|YP_003815956.1| - 2.3e-05 23.9 0.3 6.8e-05 22.3 0.0 2.0 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|302348318|ref|YP_003815956.1| - 0.00057 20.1 0.1 0.0023 18.2 0.0 2.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|302348318|ref|YP_003815956.1| - 0.0011 18.5 0.0 0.0028 17.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|302348318|ref|YP_003815956.1| - 0.0039 16.7 0.0 0.0076 15.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_CodY PF08222.6 gi|302348318|ref|YP_003815956.1| - 0.0059 15.9 0.0 0.013 14.8 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain Fe_dep_repress PF01325.14 gi|302348318|ref|YP_003815956.1| - 0.03 14.2 0.0 0.08 12.8 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|302348318|ref|YP_003815956.1| - 0.042 13.6 0.0 0.089 12.6 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain AcylCoA_dehyd_C PF12186.3 gi|302348318|ref|YP_003815956.1| - 0.087 12.6 0.2 5.4 6.9 0.0 2.2 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase C terminal B-block_TFIIIC PF04182.7 gi|302348318|ref|YP_003815956.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC EAP30 PF04157.11 gi|302348318|ref|YP_003815956.1| - 0.12 11.5 0.1 0.38 9.8 0.0 1.9 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_WhiA PF02650.9 gi|302348318|ref|YP_003815956.1| - 0.14 12.5 0.0 0.31 11.4 0.0 1.6 1 0 0 1 1 1 0 WhiA C-terminal HTH domain APH PF01636.18 gi|302348319|ref|YP_003815957.1| - 1.3e-05 25.1 0.8 0.027 14.1 0.1 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|302348319|ref|YP_003815957.1| - 0.0019 17.2 0.0 0.024 13.7 0.0 2.5 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family DUF2733 PF10813.3 gi|302348319|ref|YP_003815957.1| - 0.086 12.4 0.0 0.24 10.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2733) DUF504 PF04457.7 gi|302348320|ref|YP_003815958.1| - 3.9e-10 39.7 0.0 4.9e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF504) RA PF00788.18 gi|302348320|ref|YP_003815958.1| - 0.11 13.0 0.0 0.12 12.8 0.0 1.2 1 0 0 1 1 1 0 Ras association (RalGDS/AF-6) domain HIT PF01230.18 gi|302348321|ref|YP_003815959.1| - 1.2e-26 93.0 0.4 7.8e-26 90.4 0.0 1.9 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|302348321|ref|YP_003815959.1| - 1.6e-12 47.6 0.0 2.6e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding LuxC PF05893.9 gi|302348321|ref|YP_003815959.1| - 0.031 12.9 0.0 0.043 12.5 0.0 1.1 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) CwfJ_C_1 PF04677.10 gi|302348321|ref|YP_003815959.1| - 0.049 13.2 0.0 0.084 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 PHP_C PF13263.1 gi|302348322|ref|YP_003815960.1| - 2.5e-15 55.7 0.0 8e-15 54.0 0.0 1.9 1 1 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|302348322|ref|YP_003815960.1| - 2.3e-13 50.3 0.0 3.9e-13 49.5 0.0 1.3 1 1 0 1 1 1 1 PHP domain DUF2139 PF09910.4 gi|302348323|ref|YP_003815961.1| - 7.6e-131 436.1 0.2 9.6e-131 435.8 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) Cyclase PF04199.8 gi|302348324|ref|YP_003815962.1| - 1.6e-26 93.0 0.0 2e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase B12-binding PF02310.14 gi|302348325|ref|YP_003815963.1| - 2.8e-27 94.9 0.0 3.9e-26 91.2 0.0 2.2 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.16 gi|302348325|ref|YP_003815963.1| - 8.6e-27 94.3 0.0 5.9e-25 88.3 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|302348325|ref|YP_003815963.1| - 0.00018 21.6 0.0 0.0003 20.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM_N PF08497.5 gi|302348325|ref|YP_003815963.1| - 0.00036 19.5 0.1 0.26 10.1 0.0 2.9 4 0 0 4 4 4 2 Radical SAM N-terminal Fer4_14 PF13394.1 gi|302348325|ref|YP_003815963.1| - 0.014 15.4 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Glyco_trans_4_2 PF13477.1 gi|302348325|ref|YP_003815963.1| - 0.055 13.2 0.0 1.5 8.6 0.0 2.4 2 0 0 2 2 2 0 Glycosyl transferase 4-like Aldolase PF01081.14 gi|302348325|ref|YP_003815963.1| - 0.089 11.9 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 KDPG and KHG aldolase Radical_SAM PF04055.16 gi|302348326|ref|YP_003815964.1| - 5.5e-27 94.9 0.0 1.4e-26 93.6 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|302348326|ref|YP_003815964.1| - 4.2e-09 36.5 0.9 1.2e-08 35.1 0.6 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|302348326|ref|YP_003815964.1| - 4.9e-09 36.4 0.0 1e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|302348326|ref|YP_003815964.1| - 6.9e-08 32.5 0.0 1.3e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain HMGL-like PF00682.14 gi|302348326|ref|YP_003815964.1| - 0.00011 21.9 0.0 0.0002 21.1 0.0 1.3 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.19 gi|302348326|ref|YP_003815964.1| - 0.028 13.7 0.1 0.14 11.4 0.0 2.1 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Pyridox_ox_2 PF12900.2 gi|302348326|ref|YP_003815964.1| - 0.096 12.5 0.1 2.7 7.8 0.1 2.3 2 0 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase DUF4382 PF14321.1 gi|302348327|ref|YP_003815965.1| - 2.6e-18 66.4 0.1 3.1e-18 66.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) GHMP_kinases_C PF08544.8 gi|302348328|ref|YP_003815966.1| - 4.9e-07 29.8 0.0 1.7e-06 28.1 0.0 2.0 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|302348328|ref|YP_003815966.1| - 0.079 13.0 0.1 0.89 9.6 0.0 2.2 2 0 0 2 2 2 0 GHMP kinases N terminal domain DUF1464 PF07318.7 gi|302348329|ref|YP_003815967.1| - 1.8e-99 332.7 1.9 2.2e-99 332.5 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) NTPase_I-T PF01931.13 gi|302348330|ref|YP_003815968.1| - 8e-31 107.0 0.0 9.6e-31 106.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Lactamase_B PF00753.22 gi|302348331|ref|YP_003815969.1| - 7.9e-22 77.8 0.8 1.2e-21 77.2 0.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|302348331|ref|YP_003815969.1| - 1.4e-06 28.3 0.0 3.4e-06 27.1 0.0 1.7 1 1 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|302348331|ref|YP_003815969.1| - 0.0013 18.3 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain CheB_methylest PF01339.12 gi|302348331|ref|YP_003815969.1| - 0.058 12.8 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 CheB methylesterase HHH_5 PF14520.1 gi|302348331|ref|YP_003815969.1| - 0.061 13.4 1.7 0.27 11.4 0.6 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain FMN_red PF03358.10 gi|302348331|ref|YP_003815969.1| - 0.083 12.3 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 NADPH-dependent FMN reductase AP_endonuc_2 PF01261.19 gi|302348332|ref|YP_003815970.1| - 1.6e-27 96.1 0.1 2.1e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel tRNA-Thr_ED PF08915.6 gi|302348333|ref|YP_003815971.1| - 3.3e-35 121.0 0.0 5.2e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|302348333|ref|YP_003815971.1| - 2.6e-17 62.5 0.4 7.8e-17 61.0 0.1 2.0 3 0 0 3 3 3 1 Anticodon binding domain HypA PF01155.14 gi|302348334|ref|YP_003815972.1| - 0.028 14.1 0.2 0.03 14.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|302348334|ref|YP_003815972.1| - 0.054 13.8 0.7 4.5 7.6 0.0 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn_ribbon_recom PF13408.1 gi|302348334|ref|YP_003815972.1| - 0.059 13.6 1.1 0.085 13.1 0.8 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc_ribbon_4 PF13717.1 gi|302348334|ref|YP_003815972.1| - 0.099 12.3 0.4 5.6 6.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|302348334|ref|YP_003815972.1| - 0.11 12.0 0.5 5.7 6.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|302348334|ref|YP_003815972.1| - 0.12 11.8 0.4 0.26 10.7 0.0 1.7 2 0 0 2 2 2 0 Cysteine-rich KTR Terminase_GpA PF05876.7 gi|302348334|ref|YP_003815972.1| - 0.12 10.6 0.1 0.13 10.5 0.1 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zinc_ribbon_2 PF13240.1 gi|302348334|ref|YP_003815972.1| - 0.13 11.8 1.5 10 5.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF866 PF05907.8 gi|302348334|ref|YP_003815972.1| - 0.14 11.6 0.3 0.19 11.2 0.2 1.3 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) DZR PF12773.2 gi|302348334|ref|YP_003815972.1| - 0.14 11.9 0.8 0.42 10.4 0.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|302348334|ref|YP_003815972.1| - 0.2 11.4 1.5 2.1 8.1 0.2 2.0 2 0 0 2 2 2 0 Ribosomal protein L37e DUF3797 PF12677.2 gi|302348334|ref|YP_003815972.1| - 0.26 10.9 2.2 1.7 8.3 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.7 gi|302348334|ref|YP_003815972.1| - 0.5 9.7 2.8 4.5 6.6 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L33 PF00471.15 gi|302348334|ref|YP_003815972.1| - 0.65 10.2 4.7 5.7 7.2 3.2 2.1 1 1 0 1 1 1 0 Ribosomal protein L33 zf-ribbon_3 PF13248.1 gi|302348334|ref|YP_003815972.1| - 0.77 9.0 4.5 4.4 6.6 0.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|302348334|ref|YP_003815972.1| - 1.3 8.5 5.0 7.7 6.1 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain ABC2_membrane PF01061.19 gi|302348335|ref|YP_003815973.1| - 0.00035 19.7 19.9 0.00035 19.7 13.8 2.2 1 1 2 3 3 3 2 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|302348335|ref|YP_003815973.1| - 0.014 14.4 22.0 0.0042 16.1 13.1 1.7 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|302348336|ref|YP_003815974.1| - 1.7e-23 83.4 0.0 2.5e-23 82.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302348336|ref|YP_003815974.1| - 6.5e-10 39.4 0.0 0.00085 19.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|302348336|ref|YP_003815974.1| - 0.00033 19.9 0.1 0.15 11.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|302348336|ref|YP_003815974.1| - 0.0055 16.7 0.3 0.0079 16.1 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.1 gi|302348336|ref|YP_003815974.1| - 0.0075 14.7 0.0 0.0098 14.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|302348336|ref|YP_003815974.1| - 0.0082 15.6 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|302348336|ref|YP_003815974.1| - 0.01 16.6 0.0 0.023 15.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|302348336|ref|YP_003815974.1| - 0.013 15.6 0.0 0.028 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|302348336|ref|YP_003815974.1| - 0.013 14.7 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|302348336|ref|YP_003815974.1| - 0.013 15.8 0.0 0.018 15.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|302348336|ref|YP_003815974.1| - 0.033 13.8 0.0 0.084 12.5 0.0 1.7 1 0 0 1 1 1 0 NACHT domain UBA PF00627.26 gi|302348336|ref|YP_003815974.1| - 0.039 13.8 0.0 0.085 12.7 0.0 1.6 1 0 0 1 1 1 0 UBA/TS-N domain AAA_28 PF13521.1 gi|302348336|ref|YP_003815974.1| - 0.1 12.5 0.0 0.32 10.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|302348336|ref|YP_003815974.1| - 0.1 11.9 0.0 0.46 9.8 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain Lyase_1 PF00206.15 gi|302348337|ref|YP_003815975.1| - 5.6e-88 295.1 0.0 1e-87 294.2 0.0 1.4 2 0 0 2 2 2 1 Lyase FumaraseC_C PF10415.4 gi|302348337|ref|YP_003815975.1| - 2.7e-06 27.3 0.2 6.7e-05 22.8 0.0 3.1 3 0 0 3 3 3 1 Fumarase C C-terminus RHH_1 PF01402.16 gi|302348337|ref|YP_003815975.1| - 2.6 8.0 6.0 2.2 8.2 0.1 3.3 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family Aldo_ket_red PF00248.16 gi|302348338|ref|YP_003815976.1| - 2.5e-64 216.8 0.0 2.8e-64 216.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family AMP-binding PF00501.23 gi|302348339|ref|YP_003815977.1| - 3e-74 249.8 0.0 3.8e-74 249.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|302348339|ref|YP_003815977.1| - 6.4e-14 52.6 0.5 3.6e-13 50.2 0.0 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF1634 PF07843.6 gi|302348340|ref|YP_003815978.1| - 2.4e-25 88.1 10.9 2.9e-25 87.9 7.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) TauE PF01925.14 gi|302348341|ref|YP_003815979.1| - 2.6e-37 128.5 25.9 3.1e-37 128.2 17.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE HTH_31 PF13560.1 gi|302348342|ref|YP_003815980.1| - 5.2e-11 42.5 0.9 7.1e-11 42.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|302348342|ref|YP_003815980.1| - 1.3e-09 37.7 0.0 3.7e-09 36.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|302348342|ref|YP_003815980.1| - 3e-08 33.5 0.0 5.5e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|302348342|ref|YP_003815980.1| - 0.00036 20.2 0.0 0.00086 19.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|302348342|ref|YP_003815980.1| - 0.017 14.7 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|302348342|ref|YP_003815980.1| - 0.045 13.2 0.0 0.16 11.4 0.0 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_psq PF05225.11 gi|302348342|ref|YP_003815980.1| - 0.071 12.6 0.1 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain DUF134 PF02001.11 gi|302348342|ref|YP_003815980.1| - 0.12 12.2 0.1 0.55 10.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF134 NAC PF01849.13 gi|302348343|ref|YP_003815981.1| - 3e-09 36.2 0.7 6.6e-09 35.1 0.5 1.6 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|302348343|ref|YP_003815981.1| - 3.3e-06 26.7 0.5 3.3e-06 26.7 0.3 1.5 2 0 0 2 2 2 1 UBA/TS-N domain Clp_N PF02861.15 gi|302348343|ref|YP_003815981.1| - 0.027 14.3 0.3 1.5 8.8 0.1 2.5 2 1 0 2 2 2 0 Clp amino terminal domain DUF2018 PF09442.5 gi|302348343|ref|YP_003815981.1| - 0.12 12.9 0.1 2.5 8.7 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2018) DUF2605 PF10792.4 gi|302348343|ref|YP_003815981.1| - 0.14 11.8 0.5 0.3 10.7 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2605) Beta-Casp PF10996.3 gi|302348344|ref|YP_003815982.1| - 1.2e-22 80.1 0.0 2.4e-22 79.2 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|302348344|ref|YP_003815982.1| - 2.7e-16 59.7 0.6 7.6e-16 58.3 0.4 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|302348344|ref|YP_003815982.1| - 1.8e-11 43.9 0.1 2.8e-09 36.8 0.1 2.4 2 1 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|302348344|ref|YP_003815982.1| - 1.3e-07 31.2 0.0 2.6e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|302348344|ref|YP_003815982.1| - 0.0039 16.9 0.1 0.11 12.2 0.0 2.4 1 1 0 2 2 2 1 Beta-lactamase superfamily domain Hydrolase_3 PF08282.7 gi|302348345|ref|YP_003815983.1| - 6.6e-22 78.3 0.0 1.6e-10 41.0 0.0 2.5 1 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|302348345|ref|YP_003815983.1| - 2e-05 25.1 0.2 0.011 16.1 0.0 2.9 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|302348345|ref|YP_003815983.1| - 0.0001 22.5 2.1 0.00099 19.3 0.1 2.8 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|302348345|ref|YP_003815983.1| - 0.038 13.8 0.0 0.2 11.5 0.0 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase CoA_trans PF01144.18 gi|302348346|ref|YP_003815984.1| - 1.4e-48 164.9 0.3 1.5e-42 145.2 0.0 3.0 2 1 0 2 2 2 2 Coenzyme A transferase Lip_prot_lig_C PF10437.4 gi|302348347|ref|YP_003815985.1| - 2e-09 36.9 0.0 2.3e-09 36.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus BPL_LplA_LipB PF03099.14 gi|302348348|ref|YP_003815986.1| - 5.1e-21 74.9 0.0 7.4e-21 74.4 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF366 PF04017.7 gi|302348348|ref|YP_003815986.1| - 0.15 11.3 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF366) CBS PF00571.23 gi|302348349|ref|YP_003815987.1| - 6.4e-34 115.4 5.5 6.6e-18 64.2 0.8 2.1 2 0 0 2 2 2 2 CBS domain Peptidase_S29 PF02907.10 gi|302348349|ref|YP_003815987.1| - 0.0013 18.2 0.1 0.011 15.3 0.0 1.9 1 1 1 2 2 2 1 Hepatitis C virus NS3 protease DUF3659 PF12396.3 gi|302348349|ref|YP_003815987.1| - 0.04 13.5 0.3 3.4 7.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) PRC PF05239.11 gi|302348349|ref|YP_003815987.1| - 0.047 13.5 0.2 0.21 11.4 0.0 2.0 2 0 0 2 2 2 0 PRC-barrel domain Robl_LC7 PF03259.12 gi|302348349|ref|YP_003815987.1| - 0.069 12.7 0.6 2.9 7.5 0.1 2.3 2 0 0 2 2 2 0 Roadblock/LC7 domain TBSV_P22 PF03558.8 gi|302348349|ref|YP_003815987.1| - 0.073 12.4 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 TBSV core protein P21/P22 GTP_cyclohydro2 PF00925.15 gi|302348349|ref|YP_003815987.1| - 0.074 12.2 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 GTP cyclohydrolase II DUF998 PF06197.8 gi|302348350|ref|YP_003815988.1| - 1.4e-25 89.7 14.5 1.6e-25 89.5 10.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) YfhO PF09586.5 gi|302348350|ref|YP_003815988.1| - 0.046 11.7 1.2 0.038 12.0 0.8 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO MerC PF03203.9 gi|302348350|ref|YP_003815988.1| - 4.1 7.8 7.1 9.3 6.6 2.7 2.1 1 1 1 2 2 2 0 MerC mercury resistance protein DEAD PF00270.24 gi|302348351|ref|YP_003815989.1| - 3.1e-16 59.3 0.0 9.9e-15 54.4 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|302348351|ref|YP_003815989.1| - 5.3e-16 58.2 0.0 3.8e-13 49.1 0.0 2.6 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.10 gi|302348351|ref|YP_003815989.1| - 0.0015 18.3 0.0 0.0083 15.9 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Oxidored_q6 PF01058.17 gi|302348351|ref|YP_003815989.1| - 0.029 13.9 0.0 0.089 12.4 0.0 1.8 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase, 20 Kd subunit TFIIB PF00382.14 gi|302348352|ref|YP_003815990.1| - 2.9e-12 46.1 0.2 9e-11 41.4 0.0 2.2 2 0 0 2 2 2 1 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|302348352|ref|YP_003815990.1| - 1.3e-08 34.0 1.5 2.1e-08 33.3 1.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|302348352|ref|YP_003815990.1| - 6.1e-05 22.3 0.8 0.00015 21.0 0.5 1.7 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|302348352|ref|YP_003815990.1| - 0.00011 21.3 1.5 0.00021 20.3 1.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|302348352|ref|YP_003815990.1| - 0.00098 18.7 0.4 0.0018 17.8 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|302348352|ref|YP_003815990.1| - 0.0015 18.2 1.4 0.0022 17.6 0.9 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.2 gi|302348352|ref|YP_003815990.1| - 0.0028 17.4 0.2 0.0043 16.8 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|302348352|ref|YP_003815990.1| - 0.0029 17.3 1.0 0.0089 15.7 0.7 1.8 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zf-NADH-PPase PF09297.6 gi|302348352|ref|YP_003815990.1| - 0.0038 16.6 0.3 0.011 15.2 0.2 1.7 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|302348352|ref|YP_003815990.1| - 0.0093 15.6 2.3 0.019 14.6 1.6 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit HTH_24 PF13412.1 gi|302348352|ref|YP_003815990.1| - 0.012 15.0 0.0 0.024 14.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|302348352|ref|YP_003815990.1| - 0.024 13.9 0.0 0.065 12.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Rubredoxin PF00301.15 gi|302348352|ref|YP_003815990.1| - 0.025 14.4 1.3 0.17 11.7 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin HTH_3 PF01381.17 gi|302348352|ref|YP_003815990.1| - 0.035 13.9 0.1 0.14 12.0 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix HTH_23 PF13384.1 gi|302348352|ref|YP_003815990.1| - 0.037 13.6 0.0 0.099 12.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Auto_anti-p27 PF06677.7 gi|302348352|ref|YP_003815990.1| - 0.044 13.5 3.2 0.083 12.6 2.2 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Trm112p PF03966.11 gi|302348352|ref|YP_003815990.1| - 0.079 13.3 0.2 0.25 11.7 0.1 1.9 1 0 0 1 1 1 0 Trm112p-like protein Holin_LLH PF09682.5 gi|302348352|ref|YP_003815990.1| - 0.11 12.6 0.3 6.8 6.8 0.1 2.3 2 0 0 2 2 2 0 Phage holin protein (Holin_LLH) A2L_zn_ribbon PF08792.5 gi|302348352|ref|YP_003815990.1| - 0.2 11.1 1.7 0.41 10.1 1.2 1.5 1 1 0 1 1 1 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|302348352|ref|YP_003815990.1| - 0.61 9.8 2.9 10 5.9 2.0 2.2 1 1 0 1 1 1 0 Nudix N-terminal DNA_ligase_ZBD PF03119.11 gi|302348352|ref|YP_003815990.1| - 0.64 9.7 4.6 2.6 7.8 3.1 2.0 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|302348352|ref|YP_003815990.1| - 2.1 8.4 6.4 5.2 7.1 0.1 2.9 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0547 PF10571.4 gi|302348352|ref|YP_003815990.1| - 2.2 8.0 5.4 11 5.8 3.7 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-C4_Topoisom PF01396.14 gi|302348352|ref|YP_003815990.1| - 2.7 7.5 4.5 1.3 8.5 0.1 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1595 PF12760.2 gi|302348352|ref|YP_003815990.1| - 6.1 6.7 5.0 14 5.5 0.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Gar1 PF04410.9 gi|302348353|ref|YP_003815991.1| - 1.5e-10 40.7 0.0 1.7e-10 40.5 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Lactamase_B PF00753.22 gi|302348354|ref|YP_003815992.1| - 2.4e-31 108.9 1.9 2.9e-31 108.6 1.3 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|302348354|ref|YP_003815992.1| - 4.8e-05 22.9 0.0 6.1e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Response_reg PF00072.19 gi|302348354|ref|YP_003815992.1| - 0.021 14.8 0.0 0.61 10.1 0.0 2.2 2 0 0 2 2 2 0 Response regulator receiver domain MFS_1 PF07690.11 gi|302348357|ref|YP_003815995.1| - 1e-40 139.5 55.1 1e-40 139.5 38.2 2.6 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|302348357|ref|YP_003815995.1| - 8e-06 24.6 10.8 8e-06 24.6 7.5 3.1 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|302348357|ref|YP_003815995.1| - 0.0011 17.1 23.5 0.0041 15.2 6.8 2.6 2 1 1 3 3 3 2 Transmembrane secretion effector DUF72 PF01904.13 gi|302348358|ref|YP_003815996.1| - 6.1e-43 147.2 0.0 7.3e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.19 gi|302348358|ref|YP_003815996.1| - 0.013 14.8 0.0 0.02 14.1 0.0 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel AAA_19 PF13245.1 gi|302348358|ref|YP_003815996.1| - 0.087 12.5 0.1 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Phosphodiest PF01663.17 gi|302348358|ref|YP_003815996.1| - 0.096 11.9 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase CDP-OH_P_transf PF01066.16 gi|302348359|ref|YP_003815997.1| - 1.4e-15 57.3 12.6 1.4e-15 57.3 5.0 2.3 1 1 1 2 2 2 2 CDP-alcohol phosphatidyltransferase Polysacc_deac_1 PF01522.16 gi|302348360|ref|YP_003815998.1| - 2.9e-18 65.6 0.0 4.4e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2194 PF09960.4 gi|302348360|ref|YP_003815998.1| - 0.11 10.5 0.0 0.14 10.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2194) Glycos_transf_1 PF00534.15 gi|302348361|ref|YP_003815999.1| - 3.9e-31 107.7 0.0 5.4e-31 107.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302348361|ref|YP_003815999.1| - 4.5e-19 68.9 0.2 1.3e-18 67.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|302348361|ref|YP_003815999.1| - 1.1e-15 58.1 2.0 2.9e-15 56.7 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|302348361|ref|YP_003815999.1| - 1.5e-13 50.8 0.0 3.2e-13 49.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|302348361|ref|YP_003815999.1| - 9.1e-08 32.2 0.0 2.2e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 PIGA PF08288.7 gi|302348361|ref|YP_003815999.1| - 0.00025 21.3 0.0 0.00048 20.4 0.0 1.4 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Glyco_trans_4_2 PF13477.1 gi|302348361|ref|YP_003815999.1| - 0.0003 20.6 0.0 0.0057 16.4 0.0 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|302348361|ref|YP_003815999.1| - 0.00034 20.1 0.0 0.042 13.3 0.0 2.3 2 0 0 2 2 2 1 Starch synthase catalytic domain UPF0104 PF03706.8 gi|302348362|ref|YP_003816000.1| - 1.8e-19 70.1 32.1 6.3e-19 68.3 22.3 1.7 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0104) adh_short PF00106.20 gi|302348363|ref|YP_003816001.1| - 1.1e-31 109.9 0.9 1.5e-31 109.5 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|302348363|ref|YP_003816001.1| - 1.2e-23 84.1 0.0 1.5e-23 83.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|302348363|ref|YP_003816001.1| - 8.7e-15 54.8 0.2 3e-14 53.0 0.1 1.6 1 1 1 2 2 2 1 KR domain DUF1776 PF08643.5 gi|302348363|ref|YP_003816001.1| - 0.00032 19.9 0.0 0.0018 17.4 0.0 1.8 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.16 gi|302348363|ref|YP_003816001.1| - 0.01 15.2 0.1 0.028 13.8 0.0 1.8 1 1 1 2 2 2 0 NAD dependent epimerase/dehydratase family SCP2_2 PF13530.1 gi|302348363|ref|YP_003816001.1| - 0.023 14.0 0.0 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 Sterol carrier protein domain NAD_binding_10 PF13460.1 gi|302348363|ref|YP_003816001.1| - 0.072 13.0 0.1 0.18 11.8 0.1 1.7 1 0 0 1 1 1 0 NADH(P)-binding TauE PF01925.14 gi|302348364|ref|YP_003816002.1| - 4.8e-43 147.3 42.5 5.4e-43 147.1 29.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF202 PF02656.10 gi|302348364|ref|YP_003816002.1| - 7.8 6.8 12.9 17 5.6 0.4 4.2 2 2 0 2 2 2 0 Domain of unknown function (DUF202) Inos-1-P_synth PF01658.12 gi|302348365|ref|YP_003816003.1| - 4.5e-26 90.8 0.0 1.1e-25 89.5 0.0 1.7 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.7 gi|302348365|ref|YP_003816003.1| - 8.4e-24 84.5 0.0 1.4e-23 83.8 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase LSM PF01423.17 gi|302348366|ref|YP_003816004.1| - 1.5e-16 59.6 0.5 1.8e-16 59.4 0.4 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|302348366|ref|YP_003816004.1| - 0.029 14.2 0.1 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain FAA_hydrolase PF01557.13 gi|302348367|ref|YP_003816005.1| - 3.7e-58 196.5 0.0 5e-58 196.1 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.4 gi|302348367|ref|YP_003816005.1| - 0.04 14.3 0.0 0.2 12.0 0.0 2.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2437) Aldo_ket_red PF00248.16 gi|302348368|ref|YP_003816006.1| - 3.3e-66 222.9 0.0 4.6e-66 222.5 0.0 1.2 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_1 PF01402.16 gi|302348368|ref|YP_003816006.1| - 0.076 12.9 0.3 3.6 7.6 0.0 3.1 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DUF3143 PF11341.3 gi|302348368|ref|YP_003816006.1| - 0.11 12.3 0.2 0.39 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3143) GCV_T PF01571.16 gi|302348369|ref|YP_003816007.1| - 1.2e-48 165.2 0.0 1.7e-48 164.8 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|302348369|ref|YP_003816007.1| - 1.1e-18 67.0 0.1 1.8e-18 66.3 0.1 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Amidohydro_3 PF07969.6 gi|302348370|ref|YP_003816008.1| - 1.2e-73 248.7 0.3 1.4e-73 248.4 0.2 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|302348370|ref|YP_003816008.1| - 2.3e-07 30.8 0.6 0.00045 19.9 0.0 2.3 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|302348370|ref|YP_003816008.1| - 0.00048 19.8 0.0 0.0037 17.0 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|302348371|ref|YP_003816009.1| - 1.5e-21 77.6 9.8 2e-21 77.2 6.8 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|302348371|ref|YP_003816009.1| - 3.7e-15 56.4 0.5 5.6e-13 49.2 0.3 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|302348371|ref|YP_003816009.1| - 2.6e-13 49.9 7.7 1.5e-10 40.8 3.1 2.3 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|302348371|ref|YP_003816009.1| - 1.5e-10 40.7 0.0 2.8e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Lyase_aromatic PF00221.14 gi|302348372|ref|YP_003816010.1| - 9.7e-116 387.0 5.2 1.2e-115 386.6 3.6 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Arginase PF00491.16 gi|302348373|ref|YP_003816011.1| - 7.3e-48 163.2 0.0 9e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family AA_permease_2 PF13520.1 gi|302348374|ref|YP_003816012.1| - 1.2e-26 93.2 57.2 1.5e-26 92.9 39.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|302348374|ref|YP_003816012.1| - 5e-18 64.7 46.7 8.2e-18 63.9 32.4 1.3 1 1 0 1 1 1 1 Amino acid permease Urocanase PF01175.13 gi|302348375|ref|YP_003816013.1| - 9.8e-235 779.7 0.1 1.1e-234 779.5 0.1 1.0 1 0 0 1 1 1 1 Urocanase SBP_bac_6 PF13343.1 gi|302348375|ref|YP_003816013.1| - 0.032 13.5 0.1 1.1 8.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein MMPL PF03176.10 gi|302348376|ref|YP_003816014.1| - 5.4e-64 215.9 39.9 1.3e-35 122.6 11.1 2.4 2 0 0 2 2 2 2 MMPL family YHS PF04945.8 gi|302348377|ref|YP_003816015.1| - 5e-20 71.0 0.9 5.9e-20 70.8 0.6 1.0 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|302348377|ref|YP_003816015.1| - 5.8e-06 25.8 0.8 7.4e-06 25.5 0.6 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|302348377|ref|YP_003816015.1| - 3.5e-05 23.8 1.1 5e-05 23.3 0.8 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.3 gi|302348377|ref|YP_003816015.1| - 0.012 16.1 0.0 0.013 15.9 0.0 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase E1-E2_ATPase PF00122.15 gi|302348378|ref|YP_003816016.1| - 5.4e-55 185.9 0.8 8.6e-55 185.2 0.6 1.3 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|302348378|ref|YP_003816016.1| - 2.4e-39 135.9 0.4 8e-39 134.2 0.3 2.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|302348378|ref|YP_003816016.1| - 6.2e-21 74.3 0.5 3.3e-13 49.5 0.3 2.6 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|302348378|ref|YP_003816016.1| - 1.3e-16 61.2 0.0 7.7e-15 55.5 0.0 2.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|302348378|ref|YP_003816016.1| - 0.0049 16.4 0.1 2.6 7.5 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|302348378|ref|YP_003816016.1| - 0.056 13.6 0.0 0.56 10.3 0.0 2.7 2 2 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF3234 PF11572.3 gi|302348378|ref|YP_003816016.1| - 0.38 10.8 3.6 6.2 7.0 0.3 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3234) Aminotran_5 PF00266.14 gi|302348379|ref|YP_003816017.1| - 1.3e-38 132.6 0.0 1.6e-38 132.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|302348379|ref|YP_003816017.1| - 9.9e-09 34.6 0.0 3.3e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|302348379|ref|YP_003816017.1| - 7.8e-07 28.4 0.1 2.7e-06 26.6 0.0 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|302348379|ref|YP_003816017.1| - 3.6e-05 22.2 0.0 6.1e-05 21.4 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.14 gi|302348379|ref|YP_003816017.1| - 0.0014 17.1 0.0 0.002 16.5 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|302348379|ref|YP_003816017.1| - 0.0021 17.2 0.0 0.0035 16.5 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|302348379|ref|YP_003816017.1| - 0.0025 16.2 0.0 0.0044 15.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Glyco_tranf_2_3 PF13641.1 gi|302348379|ref|YP_003816017.1| - 0.084 12.6 1.7 2.3 7.9 0.0 3.1 2 1 0 3 3 3 0 Glycosyltransferase like family 2 TPR_2 PF07719.12 gi|302348380|ref|YP_003816018.1| - 0.0003 20.4 4.0 0.00096 18.8 1.0 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|302348380|ref|YP_003816018.1| - 0.0073 15.9 0.5 0.0073 15.9 0.3 2.4 2 0 0 2 2 2 1 TPR repeat TPR_12 PF13424.1 gi|302348380|ref|YP_003816018.1| - 0.047 13.6 2.2 1.3 9.0 0.1 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF4197 PF13852.1 gi|302348380|ref|YP_003816018.1| - 0.062 12.8 0.6 2.6 7.5 0.4 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4197) TPR_1 PF00515.23 gi|302348380|ref|YP_003816018.1| - 0.092 12.3 6.3 0.035 13.7 1.8 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|302348380|ref|YP_003816018.1| - 0.22 11.6 2.4 0.36 10.9 0.1 2.3 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 AhpC-TSA PF00578.16 gi|302348381|ref|YP_003816019.1| - 4.2e-40 136.2 0.0 4.9e-40 136.0 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|302348381|ref|YP_003816019.1| - 9.4e-27 93.3 0.1 1e-26 93.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|302348381|ref|YP_003816019.1| - 2.4e-05 23.8 0.0 3e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Thioredoxin_8 PF13905.1 gi|302348381|ref|YP_003816019.1| - 0.00017 21.6 0.0 0.00023 21.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.1 gi|302348381|ref|YP_003816019.1| - 0.00018 21.3 0.0 0.00025 20.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.9 gi|302348381|ref|YP_003816019.1| - 0.026 14.1 0.1 0.045 13.3 0.0 1.4 1 1 0 1 1 1 0 SCO1/SenC DUF4473 PF14747.1 gi|302348381|ref|YP_003816019.1| - 0.036 14.2 0.1 0.056 13.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4473) GSHPx PF00255.14 gi|302348381|ref|YP_003816019.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.4 1 1 0 1 1 1 0 Glutathione peroxidase Acyl-CoA_dh_1 PF00441.19 gi|302348382|ref|YP_003816020.1| - 7.1e-47 159.2 3.3 1.2e-46 158.4 2.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|302348382|ref|YP_003816020.1| - 4.2e-31 107.8 0.2 5.3e-30 104.3 0.0 2.6 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|302348382|ref|YP_003816020.1| - 2.9e-22 77.9 0.2 5.8e-22 76.9 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|302348382|ref|YP_003816020.1| - 4.5e-19 69.0 3.8 5.2e-19 68.8 0.8 2.1 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Antitoxin-MazE PF04014.13 gi|302348383|ref|YP_003816021.1| - 2.3e-07 30.3 0.0 4.8e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE AhpC-TSA PF00578.16 gi|302348384|ref|YP_003816022.1| - 2.7e-29 101.3 0.0 4.2e-29 100.7 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|302348384|ref|YP_003816022.1| - 3.9e-12 45.9 0.0 5.2e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|302348384|ref|YP_003816022.1| - 5.4e-07 29.1 0.0 1.2e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Radical_SAM PF04055.16 gi|302348385|ref|YP_003816023.1| - 1.4e-12 48.1 0.0 2.8e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|302348385|ref|YP_003816023.1| - 3e-08 33.6 0.0 6.3e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|302348385|ref|YP_003816023.1| - 1e-06 28.9 0.0 1.7e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF364 PF04016.7 gi|302348386|ref|YP_003816024.1| - 1.7e-34 118.2 0.0 2.3e-34 117.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|302348386|ref|YP_003816024.1| - 1.6e-10 41.0 0.0 3.6e-10 39.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) Ham1p_like PF01725.11 gi|302348388|ref|YP_003816026.1| - 3.2e-52 176.6 0.0 3.7e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 Ham1 family APH PF01636.18 gi|302348389|ref|YP_003816027.1| - 6.6e-09 35.8 0.5 3e-06 27.1 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|302348389|ref|YP_003816027.1| - 4.9e-08 32.5 0.0 7.5e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|302348389|ref|YP_003816027.1| - 1.6e-05 24.2 0.0 2.3e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|302348389|ref|YP_003816027.1| - 0.0018 17.5 0.0 0.0025 17.0 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|302348389|ref|YP_003816027.1| - 0.0021 17.2 0.0 0.0059 15.7 0.0 1.7 1 1 0 1 1 1 1 Protein tyrosine kinase EcKinase PF02958.15 gi|302348389|ref|YP_003816027.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase Peptidase_M22 PF00814.20 gi|302348390|ref|YP_003816028.1| - 1.7e-70 237.6 0.1 1.9e-70 237.4 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family CheX PF13690.1 gi|302348390|ref|YP_003816028.1| - 0.0047 16.7 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX UPF0075 PF03702.9 gi|302348390|ref|YP_003816028.1| - 0.013 14.4 0.0 0.12 11.2 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0075) DUF1537 PF07005.6 gi|302348390|ref|YP_003816028.1| - 0.039 13.6 3.8 0.15 11.6 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function, DUF1537 CmcH_NodU PF02543.10 gi|302348390|ref|YP_003816028.1| - 0.12 11.5 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Carbamoyltransferase Ribosomal_S27 PF01599.14 gi|302348391|ref|YP_003816029.1| - 7.6e-08 32.0 2.6 1e-07 31.6 1.8 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|302348391|ref|YP_003816029.1| - 0.00037 20.2 1.7 0.00039 20.1 1.2 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|302348391|ref|YP_003816029.1| - 0.0055 15.8 3.6 0.14 11.3 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-piccolo PF05715.8 gi|302348391|ref|YP_003816029.1| - 0.0057 16.6 0.6 0.0066 16.4 0.4 1.1 1 0 0 1 1 1 1 Piccolo Zn-finger RNA_POL_M_15KD PF02150.11 gi|302348391|ref|YP_003816029.1| - 0.0059 16.2 2.4 0.007 16.0 0.6 1.9 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|302348391|ref|YP_003816029.1| - 0.0073 15.9 0.4 0.0076 15.8 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|302348391|ref|YP_003816029.1| - 0.0097 15.7 0.5 0.015 15.1 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon IBR PF01485.16 gi|302348391|ref|YP_003816029.1| - 0.01 15.7 0.6 0.011 15.5 0.4 1.1 1 0 0 1 1 1 0 IBR domain A2L_zn_ribbon PF08792.5 gi|302348391|ref|YP_003816029.1| - 0.027 13.9 2.4 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|302348391|ref|YP_003816029.1| - 0.046 13.3 0.4 0.22 11.1 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|302348391|ref|YP_003816029.1| - 0.063 12.9 0.6 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|302348391|ref|YP_003816029.1| - 0.071 12.6 1.5 0.11 12.0 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|302348391|ref|YP_003816029.1| - 0.083 12.8 0.8 2.1 8.3 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-tcix PF14952.1 gi|302348391|ref|YP_003816029.1| - 0.083 12.2 0.2 0.083 12.2 0.2 1.8 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-H2C2_2 PF13465.1 gi|302348391|ref|YP_003816029.1| - 0.092 13.0 2.5 6.3 7.2 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger double domain RecR PF02132.10 gi|302348391|ref|YP_003816029.1| - 0.095 12.1 1.5 0.28 10.6 1.0 1.7 1 1 0 1 1 1 0 RecR protein zf-ISL3 PF14690.1 gi|302348391|ref|YP_003816029.1| - 0.14 12.2 6.0 1 9.4 0.6 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FlhC PF05280.6 gi|302348391|ref|YP_003816029.1| - 0.15 11.5 0.3 0.15 11.5 0.2 1.1 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) DUF3797 PF12677.2 gi|302348391|ref|YP_003816029.1| - 0.15 11.7 1.0 0.15 11.7 0.7 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) FYVE PF01363.16 gi|302348391|ref|YP_003816029.1| - 0.19 11.6 2.1 0.27 11.1 1.5 1.3 1 0 0 1 1 1 0 FYVE zinc finger DUF2082 PF09855.4 gi|302348391|ref|YP_003816029.1| - 0.21 11.4 6.7 2.5 8.0 0.5 2.3 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF4379 PF14311.1 gi|302348391|ref|YP_003816029.1| - 0.26 11.1 2.0 5.6 6.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zf-RanBP PF00641.13 gi|302348391|ref|YP_003816029.1| - 0.28 10.3 2.2 8.4 5.6 0.1 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others GFA PF04828.9 gi|302348391|ref|YP_003816029.1| - 0.32 10.9 2.2 4.4 7.3 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-LITAF-like PF10601.4 gi|302348391|ref|YP_003816029.1| - 0.52 10.1 3.8 0.3 10.9 0.3 1.9 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|302348391|ref|YP_003816029.1| - 0.58 9.6 4.0 1.4 8.4 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-binding domain TFIIS_C PF01096.13 gi|302348391|ref|YP_003816029.1| - 0.6 9.7 3.5 2.3 7.9 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|302348391|ref|YP_003816029.1| - 1.8 7.9 4.2 8.5 5.7 0.5 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|302348391|ref|YP_003816029.1| - 2.5 7.7 12.0 80 2.9 8.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|302348391|ref|YP_003816029.1| - 4.5 7.0 7.6 1.4 8.6 0.1 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_S24e PF01282.14 gi|302348392|ref|YP_003816030.1| - 2.7e-22 78.3 2.5 3.7e-22 77.9 1.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e DUF436 PF04260.7 gi|302348392|ref|YP_003816030.1| - 0.025 14.1 0.1 0.031 13.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF436) Methyltransf_26 PF13659.1 gi|302348394|ref|YP_003816032.1| - 3.1e-13 49.7 0.0 6.2e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|302348394|ref|YP_003816032.1| - 5.5e-08 32.2 0.0 9.3e-08 31.4 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_31 PF13847.1 gi|302348394|ref|YP_003816032.1| - 1.8e-07 30.8 0.0 3.7e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|302348394|ref|YP_003816032.1| - 0.00017 21.0 0.0 0.00053 19.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain UPF0020 PF01170.13 gi|302348394|ref|YP_003816032.1| - 0.00019 21.0 0.0 0.00073 19.1 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|302348394|ref|YP_003816032.1| - 0.00053 19.5 0.0 0.003 17.0 0.0 2.1 2 1 0 3 3 3 1 DNA methylase Met_10 PF02475.11 gi|302348394|ref|YP_003816032.1| - 0.0013 18.3 0.0 0.0022 17.5 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|302348394|ref|YP_003816032.1| - 0.0016 19.0 0.0 0.0044 17.5 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain TaqI_C PF12950.2 gi|302348394|ref|YP_003816032.1| - 0.002 17.8 0.1 0.0039 16.9 0.0 1.5 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Methyltransf_15 PF09445.5 gi|302348394|ref|YP_003816032.1| - 0.024 14.1 0.0 0.049 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MarR_2 PF12802.2 gi|302348395|ref|YP_003816033.1| - 0.0013 18.3 0.1 0.0022 17.6 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|302348395|ref|YP_003816033.1| - 0.0023 18.2 0.0 0.0033 17.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|302348395|ref|YP_003816033.1| - 0.0027 17.4 0.1 0.0041 16.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|302348395|ref|YP_003816033.1| - 0.0048 16.5 0.0 0.0087 15.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|302348395|ref|YP_003816033.1| - 0.0063 15.8 0.1 0.011 15.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|302348395|ref|YP_003816033.1| - 0.0075 15.9 0.1 0.012 15.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Amidohydro_2 PF04909.9 gi|302348396|ref|YP_003816034.1| - 1.1e-28 100.5 0.5 1.8e-28 99.8 0.3 1.4 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|302348396|ref|YP_003816034.1| - 0.13 11.4 0.0 1.2 8.2 0.0 2.3 1 1 0 1 1 1 0 TatD related DNase AMP-binding PF00501.23 gi|302348397|ref|YP_003816035.1| - 1.2e-95 320.4 0.0 1.5e-95 320.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|302348397|ref|YP_003816035.1| - 6.9e-23 81.3 0.2 1.3e-22 80.4 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Grp1_Fun34_YaaH PF01184.14 gi|302348398|ref|YP_003816036.1| - 5e-36 123.9 23.8 6.1e-36 123.7 16.5 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Acetyltransf_1 PF00583.19 gi|302348399|ref|YP_003816037.1| - 2.2e-06 27.5 0.3 1e-05 25.4 0.2 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|302348399|ref|YP_003816037.1| - 4.8e-06 26.2 0.0 7.4e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein GNAT_acetyltran PF12746.2 gi|302348399|ref|YP_003816037.1| - 8.4e-06 24.7 0.0 1.1e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_3 PF13302.1 gi|302348399|ref|YP_003816037.1| - 4.1e-05 23.7 0.0 5.1e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|302348399|ref|YP_003816037.1| - 0.0043 17.1 0.1 0.0054 16.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|302348399|ref|YP_003816037.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ATP_bind_4 PF01902.12 gi|302348400|ref|YP_003816038.1| - 2.5e-34 118.5 0.0 3e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region MTS PF05175.9 gi|302348400|ref|YP_003816038.1| - 0.12 11.7 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain SBP_bac_8 PF13416.1 gi|302348401|ref|YP_003816039.1| - 8.6e-21 74.8 0.4 1.5e-20 74.1 0.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|302348401|ref|YP_003816039.1| - 1.4e-19 70.9 1.3 5.8e-19 68.9 0.9 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|302348401|ref|YP_003816039.1| - 0.0034 17.0 0.5 0.066 12.8 0.0 2.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Shisa PF13908.1 gi|302348401|ref|YP_003816039.1| - 0.22 11.6 2.3 0.39 10.8 1.6 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator SoxE PF06525.6 gi|302348401|ref|YP_003816039.1| - 1.3 8.2 14.8 0.022 14.0 4.6 2.0 2 0 0 2 2 2 0 Sulfocyanin (SoxE) MFS_1 PF07690.11 gi|302348402|ref|YP_003816040.1| - 4.7e-45 153.8 45.7 4.7e-45 153.8 31.7 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|302348402|ref|YP_003816040.1| - 1.8e-08 33.3 6.3 1.8e-08 33.3 4.4 3.2 2 1 0 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|302348402|ref|YP_003816040.1| - 0.00056 18.4 30.8 0.0029 16.0 13.4 3.7 1 1 1 3 3 3 3 MFS/sugar transport protein Apolipoprotein PF01442.13 gi|302348403|ref|YP_003816041.1| - 0.0027 17.2 0.7 0.0028 17.2 0.5 1.0 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF883 PF05957.8 gi|302348403|ref|YP_003816041.1| - 0.011 16.1 1.7 0.013 15.8 1.2 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) PLC-beta_C PF08703.5 gi|302348403|ref|YP_003816041.1| - 0.021 14.5 0.6 0.024 14.3 0.4 1.1 1 0 0 1 1 1 0 PLC-beta C terminal Cor1 PF04803.7 gi|302348403|ref|YP_003816041.1| - 0.024 14.4 0.4 0.026 14.2 0.3 1.2 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region Rho_Binding PF08912.6 gi|302348403|ref|YP_003816041.1| - 0.033 14.5 0.3 0.035 14.3 0.2 1.2 1 0 0 1 1 1 0 Rho Binding BRX_N PF13713.1 gi|302348403|ref|YP_003816041.1| - 0.039 13.4 0.3 0.42 10.1 0.0 2.2 1 1 1 2 2 2 0 Transcription factor BRX N-terminal domain MRP-S26 PF14943.1 gi|302348403|ref|YP_003816041.1| - 0.086 12.3 0.6 0.1 12.1 0.4 1.2 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 DUF993 PF06187.6 gi|302348403|ref|YP_003816041.1| - 0.1 11.1 0.0 0.11 11.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF993) YtxH PF12732.2 gi|302348403|ref|YP_003816041.1| - 0.12 12.7 1.3 0.14 12.5 0.9 1.1 1 0 0 1 1 1 0 YtxH-like protein Sulf_transp PF04143.9 gi|302348404|ref|YP_003816042.1| - 2.5e-11 43.4 24.7 2.7e-05 24.0 5.6 3.5 2 0 0 2 2 2 2 Sulphur transport SdpI PF13630.1 gi|302348405|ref|YP_003816043.1| - 1.6e-05 24.5 1.8 1.9e-05 24.2 1.2 1.1 1 0 0 1 1 1 1 SdpI/YhfL protein family DUF1761 PF08570.5 gi|302348405|ref|YP_003816043.1| - 0.0035 17.3 1.9 0.0041 17.1 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1761) DUF1469 PF07332.6 gi|302348405|ref|YP_003816043.1| - 0.0043 16.7 1.0 0.0054 16.4 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) DUF1275 PF06912.6 gi|302348405|ref|YP_003816043.1| - 0.0093 15.1 0.2 0.01 15.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1275) ABC2_membrane_4 PF12730.2 gi|302348405|ref|YP_003816043.1| - 0.018 14.2 3.6 0.022 13.9 2.5 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2207 PF09972.4 gi|302348405|ref|YP_003816043.1| - 0.024 13.2 0.1 0.025 13.1 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3177 PF11375.3 gi|302348405|ref|YP_003816043.1| - 0.024 14.0 0.9 0.027 13.9 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3177) Cyto_ox_2 PF02322.10 gi|302348405|ref|YP_003816043.1| - 0.026 13.6 0.9 0.029 13.5 0.6 1.0 1 0 0 1 1 1 0 Cytochrome oxidase subunit II DUF4231 PF14015.1 gi|302348405|ref|YP_003816043.1| - 0.031 14.2 1.5 0.037 14.0 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) Pox_A14 PF05767.7 gi|302348405|ref|YP_003816043.1| - 0.035 14.0 4.6 0.49 10.3 3.2 2.0 1 1 0 1 1 1 0 Poxvirus virion envelope protein A14 7TMR-DISM_7TM PF07695.6 gi|302348405|ref|YP_003816043.1| - 0.062 12.9 1.5 0.072 12.7 1.1 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling CAAD PF14159.1 gi|302348405|ref|YP_003816043.1| - 0.07 12.7 3.2 0.12 11.9 2.2 1.4 1 1 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF3278 PF11683.3 gi|302348405|ref|YP_003816043.1| - 0.095 12.7 0.1 0.1 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3278) Cation_ATPase_C PF00689.16 gi|302348405|ref|YP_003816043.1| - 0.13 11.8 2.3 0.15 11.6 1.6 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus OppC_N PF12911.2 gi|302348405|ref|YP_003816043.1| - 0.3 10.5 3.4 0.55 9.6 0.0 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF485 PF04341.7 gi|302348405|ref|YP_003816043.1| - 0.31 10.7 2.6 0.39 10.4 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 DUF2754 PF10953.3 gi|302348405|ref|YP_003816043.1| - 0.91 9.6 3.7 1.7 8.7 2.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2754) Vpu PF00558.14 gi|302348405|ref|YP_003816043.1| - 1.2 8.7 3.8 15 5.2 0.3 2.1 2 0 0 2 2 2 0 Vpu protein DUF2929 PF11151.3 gi|302348405|ref|YP_003816043.1| - 5.4 7.1 10.8 4.7 7.3 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2929) BPD_transp_1 PF00528.17 gi|302348407|ref|YP_003816045.1| - 3.2e-13 49.6 72.5 1.1e-08 34.8 12.5 4.2 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component DUF422 PF04240.7 gi|302348408|ref|YP_003816046.1| - 1.1e-29 103.4 19.2 1.7e-29 102.7 13.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF422) DUF608 PF04685.8 gi|302348409|ref|YP_003816047.1| - 4.3e-75 252.7 0.0 5.3e-74 249.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF608 GBA2_N PF12215.3 gi|302348409|ref|YP_003816047.1| - 2.7e-44 151.5 0.0 3.6e-44 151.0 0.0 1.2 1 0 0 1 1 1 1 beta-Glucocerebrosidase 2 N terminal POR PF01558.13 gi|302348410|ref|YP_003816048.1| - 6.2e-31 107.6 0.3 8.5e-31 107.1 0.2 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Gly_rich_SFCGS PF14272.1 gi|302348410|ref|YP_003816048.1| - 0.041 13.7 1.0 0.89 9.4 0.0 2.7 2 1 1 3 3 3 0 Glycine-rich SFCGS TPP_enzyme_C PF02775.16 gi|302348411|ref|YP_003816049.1| - 1.9e-23 82.7 0.2 4e-23 81.6 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|302348411|ref|YP_003816049.1| - 2.7e-18 66.3 0.9 5e-18 65.4 0.1 1.8 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|302348411|ref|YP_003816049.1| - 4.1e-11 42.0 13.5 2.5e-08 33.1 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|302348411|ref|YP_003816049.1| - 2.5e-07 30.2 20.3 6.1e-07 29.0 1.5 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|302348411|ref|YP_003816049.1| - 6.9e-07 28.9 5.4 0.0031 16.9 0.2 2.8 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_2 PF12797.2 gi|302348411|ref|YP_003816049.1| - 1.7e-06 27.6 12.3 0.00013 21.6 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|302348411|ref|YP_003816049.1| - 4.2e-06 27.0 11.7 7.3e-06 26.2 7.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|302348411|ref|YP_003816049.1| - 8.8e-06 25.4 21.8 5.4e-05 22.8 8.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|302348411|ref|YP_003816049.1| - 3.2e-05 23.6 9.8 7.3e-05 22.5 6.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|302348411|ref|YP_003816049.1| - 0.00012 22.2 11.0 0.0003 21.0 7.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|302348411|ref|YP_003816049.1| - 0.00017 21.6 12.9 0.0074 16.5 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|302348411|ref|YP_003816049.1| - 0.0002 21.3 8.7 0.00047 20.1 6.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|302348411|ref|YP_003816049.1| - 0.002 18.8 6.8 0.0075 16.9 0.7 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|302348411|ref|YP_003816049.1| - 0.0024 18.4 15.8 0.004 17.6 1.3 3.4 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|302348411|ref|YP_003816049.1| - 0.006 16.9 16.2 0.034 14.5 2.0 2.8 3 0 0 3 3 2 2 4Fe-4S single cluster domain Transketolase_C PF02780.15 gi|302348411|ref|YP_003816049.1| - 0.022 14.6 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transketolase, C-terminal domain Fer4_18 PF13746.1 gi|302348411|ref|YP_003816049.1| - 0.085 13.2 7.2 0.2 12.0 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|302348411|ref|YP_003816049.1| - 0.25 11.7 12.2 0.29 11.5 1.7 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Glycos_transf_2 PF00535.21 gi|302348412|ref|YP_003816050.1| - 8.4e-11 41.8 0.1 1.8e-10 40.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302348412|ref|YP_003816050.1| - 0.00037 20.3 0.0 0.00072 19.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|302348412|ref|YP_003816050.1| - 0.03 14.6 0.0 0.063 13.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Fer2_4 PF13510.1 gi|302348414|ref|YP_003816052.1| - 3.1e-19 68.5 0.1 8.8e-19 67.1 0.0 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Molybdopterin PF00384.17 gi|302348414|ref|YP_003816052.1| - 1.3e-16 60.3 0.0 2.1e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fer4 PF00037.22 gi|302348414|ref|YP_003816052.1| - 1.1e-09 37.4 17.9 2.8e-06 26.6 1.7 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer2 PF00111.22 gi|302348414|ref|YP_003816052.1| - 6.8e-09 35.3 0.3 6.8e-09 35.3 0.2 2.4 2 1 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_10 PF13237.1 gi|302348414|ref|YP_003816052.1| - 8.3e-09 35.1 10.0 2.4e-07 30.4 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|302348414|ref|YP_003816052.1| - 2e-07 30.9 6.2 2e-07 30.9 4.3 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|302348414|ref|YP_003816052.1| - 1.1e-06 28.7 26.6 6.2e-05 23.1 7.5 2.9 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|302348414|ref|YP_003816052.1| - 1.5e-06 27.7 24.9 5e-05 22.9 2.5 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|302348414|ref|YP_003816052.1| - 2.5e-06 27.8 9.0 0.0053 17.1 0.4 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Molybdop_Fe4S4 PF04879.11 gi|302348414|ref|YP_003816052.1| - 2.6e-06 27.1 0.1 7.2e-06 25.7 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.1 gi|302348414|ref|YP_003816052.1| - 4e-06 26.6 11.0 6.3e-05 22.7 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|302348414|ref|YP_003816052.1| - 1.2e-05 25.6 11.1 1.2e-05 25.6 7.7 3.1 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|302348414|ref|YP_003816052.1| - 0.00035 20.3 11.7 0.001 18.8 2.3 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|302348414|ref|YP_003816052.1| - 0.00073 20.2 1.6 0.00073 20.2 1.1 3.5 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|302348414|ref|YP_003816052.1| - 0.0039 17.4 4.9 0.0039 17.4 3.4 3.7 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|302348414|ref|YP_003816052.1| - 0.0045 17.2 8.2 0.0045 17.2 5.7 3.1 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|302348414|ref|YP_003816052.1| - 0.016 15.7 5.8 0.016 15.7 4.0 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Oxidored_nitro PF00148.14 gi|302348414|ref|YP_003816052.1| - 0.078 11.6 0.0 0.3 9.6 0.0 1.9 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Fer4_15 PF13459.1 gi|302348414|ref|YP_003816052.1| - 1.4 9.5 13.1 3.7 8.1 2.1 3.0 2 1 0 2 2 2 0 4Fe-4S single cluster domain Complex1_51K PF01512.12 gi|302348415|ref|YP_003816053.1| - 4.6e-46 156.2 0.0 6.5e-46 155.7 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|302348415|ref|YP_003816053.1| - 5.4e-09 35.0 0.3 1.4e-08 33.7 0.2 1.7 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.4 gi|302348415|ref|YP_003816053.1| - 9.9e-06 25.3 0.2 3.3e-05 23.6 0.1 2.0 1 0 0 1 1 1 1 SLBB domain Aminotran_1_2 PF00155.16 gi|302348416|ref|YP_003816054.1| - 1.7e-52 178.5 0.0 1.9e-52 178.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|302348416|ref|YP_003816054.1| - 5.4e-12 45.4 0.0 8.6e-12 44.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|302348416|ref|YP_003816054.1| - 4.5e-09 35.0 0.0 6.4e-09 34.5 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|302348416|ref|YP_003816054.1| - 6.1e-06 25.2 0.0 9.4e-06 24.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|302348416|ref|YP_003816054.1| - 4.3e-05 22.7 0.0 7.1e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Voltage_CLC PF00654.15 gi|302348417|ref|YP_003816055.1| - 1.8e-67 227.9 30.4 1.8e-67 227.9 21.1 1.9 1 1 1 2 2 2 1 Voltage gated chloride channel CBS PF00571.23 gi|302348417|ref|YP_003816055.1| - 8.5e-19 67.0 0.2 2.1e-11 43.3 0.0 2.4 2 0 0 2 2 2 2 CBS domain ThiI PF02568.9 gi|302348418|ref|YP_003816056.1| - 5.2e-48 163.1 0.0 6.7e-48 162.7 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|302348418|ref|YP_003816056.1| - 2.3e-17 63.2 0.1 8.7e-17 61.3 0.0 1.8 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|302348418|ref|YP_003816056.1| - 0.00066 19.0 0.0 0.23 10.7 0.0 2.7 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|302348418|ref|YP_003816056.1| - 0.029 13.7 0.0 0.058 12.7 0.0 1.5 1 1 0 1 1 1 0 ATP-binding region ATP_bind_3 PF01171.15 gi|302348418|ref|YP_003816056.1| - 0.059 12.8 0.0 0.19 11.1 0.0 1.8 1 1 0 1 1 1 0 PP-loop family Thioredoxin_7 PF13899.1 gi|302348419|ref|YP_003816057.1| - 6.6e-05 22.8 0.0 0.00012 22.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|302348419|ref|YP_003816057.1| - 0.00031 20.3 0.0 0.00052 19.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|302348419|ref|YP_003816057.1| - 0.00064 19.8 0.1 0.003 17.7 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|302348419|ref|YP_003816057.1| - 0.029 14.4 0.0 0.15 12.1 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin-like Thioredox_DsbH PF03190.10 gi|302348419|ref|YP_003816057.1| - 0.21 11.3 0.0 0.32 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF255 DUF1129 PF06570.6 gi|302348419|ref|YP_003816057.1| - 0.22 10.7 3.6 0.2 10.9 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Auto_anti-p27 PF06677.7 gi|302348420|ref|YP_003816058.1| - 1.6e-16 59.7 1.5 2.4e-16 59.2 1.0 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cupin_6 PF12852.2 gi|302348420|ref|YP_003816058.1| - 0.05 13.2 0.0 0.059 12.9 0.0 1.3 1 1 0 1 1 1 0 Cupin FYDLN_acid PF09538.5 gi|302348420|ref|YP_003816058.1| - 0.058 13.9 0.8 0.32 11.5 0.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) TF_Zn_Ribbon PF08271.7 gi|302348420|ref|YP_003816058.1| - 0.083 12.2 0.1 0.16 11.2 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding EamA PF00892.15 gi|302348422|ref|YP_003816060.1| - 2e-21 76.3 26.2 1.1e-13 51.2 3.6 2.7 2 1 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|302348422|ref|YP_003816060.1| - 4.3 6.9 16.6 0.28 10.8 0.4 4.4 3 2 1 5 5 5 0 Triose-phosphate Transporter family TIP49 PF06068.8 gi|302348423|ref|YP_003816061.1| - 4.7e-152 506.3 0.5 5.5e-152 506.1 0.3 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|302348423|ref|YP_003816061.1| - 3.6e-10 40.1 1.8 3.2e-07 30.6 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|302348423|ref|YP_003816061.1| - 9.1e-07 29.0 0.1 0.021 14.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|302348423|ref|YP_003816061.1| - 2.6e-06 26.6 3.6 0.00028 19.9 0.0 3.2 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|302348423|ref|YP_003816061.1| - 7.5e-06 26.0 2.1 0.00012 22.1 0.1 2.7 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|302348423|ref|YP_003816061.1| - 8.1e-05 22.1 0.5 0.00037 20.0 0.1 2.3 3 0 0 3 3 2 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|302348423|ref|YP_003816061.1| - 0.00027 20.6 0.3 0.00078 19.1 0.2 1.8 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|302348423|ref|YP_003816061.1| - 0.00078 18.9 0.1 0.0017 17.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|302348423|ref|YP_003816061.1| - 0.00079 20.2 0.0 0.0028 18.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|302348423|ref|YP_003816061.1| - 0.00097 18.5 0.9 0.0027 17.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|302348423|ref|YP_003816061.1| - 0.0014 18.3 0.1 0.0087 15.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|302348423|ref|YP_003816061.1| - 0.0017 17.5 0.1 0.0035 16.6 0.1 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_33 PF13671.1 gi|302348423|ref|YP_003816061.1| - 0.0046 16.8 0.0 0.048 13.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|302348423|ref|YP_003816061.1| - 0.0053 16.6 0.0 0.13 12.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|302348423|ref|YP_003816061.1| - 0.0061 16.8 0.0 0.02 15.1 0.0 2.1 1 1 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.7 gi|302348423|ref|YP_003816061.1| - 0.0099 14.9 0.1 0.021 13.9 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|302348423|ref|YP_003816061.1| - 0.011 16.1 0.0 0.024 14.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain DBI_PRT PF02277.12 gi|302348423|ref|YP_003816061.1| - 0.013 14.6 1.8 0.021 13.8 1.2 1.3 1 0 0 1 1 1 0 Phosphoribosyltransferase ResIII PF04851.10 gi|302348423|ref|YP_003816061.1| - 0.021 14.6 0.1 0.053 13.3 0.0 1.7 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit Mg_chelatase PF01078.16 gi|302348423|ref|YP_003816061.1| - 0.023 13.8 0.6 0.046 12.8 0.1 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|302348423|ref|YP_003816061.1| - 0.028 13.5 0.1 0.07 12.2 0.1 1.7 1 0 0 1 1 1 0 KaiC AAA_30 PF13604.1 gi|302348423|ref|YP_003816061.1| - 0.03 13.8 0.6 0.52 9.8 0.1 2.4 2 0 0 2 2 2 0 AAA domain IPT PF01745.11 gi|302348423|ref|YP_003816061.1| - 0.03 13.4 0.3 0.06 12.5 0.0 1.6 2 0 0 2 2 1 0 Isopentenyl transferase AAA_28 PF13521.1 gi|302348423|ref|YP_003816061.1| - 0.031 14.2 0.0 0.1 12.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|302348423|ref|YP_003816061.1| - 0.047 12.6 0.1 0.079 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_32 PF13654.1 gi|302348423|ref|YP_003816061.1| - 0.054 12.1 3.0 0.51 8.9 0.1 2.8 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.17 gi|302348423|ref|YP_003816061.1| - 0.062 13.4 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|302348423|ref|YP_003816061.1| - 0.062 12.8 0.1 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|302348423|ref|YP_003816061.1| - 0.066 12.9 0.0 0.17 11.5 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_2 PF07724.9 gi|302348423|ref|YP_003816061.1| - 0.067 13.0 0.1 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DEAD PF00270.24 gi|302348423|ref|YP_003816061.1| - 0.082 12.3 0.1 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 DEAD/DEAH box helicase ATP-synt_ab PF00006.20 gi|302348423|ref|YP_003816061.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|302348423|ref|YP_003816061.1| - 0.13 11.9 0.0 0.33 10.5 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|302348423|ref|YP_003816061.1| - 0.21 11.9 0.6 0.46 10.7 0.4 2.0 1 1 0 1 1 1 0 AAA domain TauE PF01925.14 gi|302348425|ref|YP_003816063.1| - 0.024 14.1 21.3 0.039 13.3 14.7 1.3 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE Creatininase PF02633.9 gi|302348427|ref|YP_003816065.1| - 2e-60 203.8 0.0 2.5e-60 203.4 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase PsiE PF06146.7 gi|302348428|ref|YP_003816066.1| - 0.0023 18.1 6.4 0.0023 18.1 4.4 2.3 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF1622 PF07784.6 gi|302348428|ref|YP_003816066.1| - 4.5 7.0 14.6 2.6 7.7 2.9 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1622) ADH_zinc_N PF00107.21 gi|302348430|ref|YP_003816068.1| - 2.7e-37 127.2 0.6 4e-37 126.6 0.4 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|302348430|ref|YP_003816068.1| - 5.4e-27 93.7 0.1 9.5e-27 92.9 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|302348430|ref|YP_003816068.1| - 3.9e-15 56.8 0.3 1e-14 55.5 0.1 1.8 1 1 1 2 2 2 1 Zinc-binding dehydrogenase NmrA PF05368.8 gi|302348430|ref|YP_003816068.1| - 0.00031 20.0 0.2 0.00041 19.6 0.2 1.2 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|302348430|ref|YP_003816068.1| - 0.0004 19.5 0.1 0.00063 18.9 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|302348430|ref|YP_003816068.1| - 0.00084 19.2 0.9 0.0015 18.4 0.6 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|302348430|ref|YP_003816068.1| - 0.00091 19.2 1.1 0.0014 18.6 0.8 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|302348430|ref|YP_003816068.1| - 0.0012 18.7 1.8 0.0021 17.9 1.2 1.4 1 0 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|302348430|ref|YP_003816068.1| - 0.0047 16.9 0.0 0.0093 15.9 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|302348430|ref|YP_003816068.1| - 0.026 14.1 0.2 0.038 13.5 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain CMAS PF02353.15 gi|302348430|ref|YP_003816068.1| - 0.029 13.4 0.1 0.04 12.9 0.1 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DXP_reductoisom PF02670.11 gi|302348430|ref|YP_003816068.1| - 0.12 12.8 2.5 0.88 10.1 0.9 2.1 1 1 1 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase adh_short_C2 PF13561.1 gi|302348430|ref|YP_003816068.1| - 0.12 12.0 0.9 0.99 9.1 0.6 2.1 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Acetyltransf_1 PF00583.19 gi|302348431|ref|YP_003816069.1| - 1.5e-20 73.0 1.3 2e-20 72.5 0.9 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|302348431|ref|YP_003816069.1| - 4.7e-14 52.5 0.0 6.7e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|302348431|ref|YP_003816069.1| - 3.7e-12 46.2 0.0 5e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|302348431|ref|YP_003816069.1| - 8.7e-10 38.5 0.1 3.4e-09 36.6 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|302348431|ref|YP_003816069.1| - 2.9e-08 33.3 0.0 4e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|302348431|ref|YP_003816069.1| - 9e-07 28.8 0.0 1.7e-06 27.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|302348431|ref|YP_003816069.1| - 3.2e-05 24.1 0.1 0.00012 22.2 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|302348431|ref|YP_003816069.1| - 0.001 18.6 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|302348431|ref|YP_003816069.1| - 0.0016 18.3 0.0 0.0036 17.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|302348431|ref|YP_003816069.1| - 0.0026 17.7 0.2 0.0037 17.2 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|302348431|ref|YP_003816069.1| - 0.011 15.6 0.1 0.016 15.0 0.1 1.2 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase UbiA PF01040.13 gi|302348432|ref|YP_003816070.1| - 3.3e-21 75.6 28.5 4.7e-21 75.1 19.8 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family Hydantoinase_A PF01968.13 gi|302348433|ref|YP_003816071.1| - 6.5e-83 278.1 10.7 2.8e-81 272.8 3.4 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|302348433|ref|YP_003816071.1| - 2.8e-46 157.2 0.1 5.4e-46 156.2 0.0 1.5 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|302348433|ref|YP_003816071.1| - 0.0078 14.5 2.2 0.92 7.7 0.1 2.2 2 0 0 2 2 2 2 MutL protein EutA PF06277.6 gi|302348433|ref|YP_003816071.1| - 0.29 9.6 0.5 0.58 8.7 0.4 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutA Hydantoinase_B PF02538.9 gi|302348434|ref|YP_003816072.1| - 1.1e-155 518.8 0.0 1.2e-155 518.7 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Reo_sigmaC PF04582.7 gi|302348435|ref|YP_003816073.1| - 0.0019 17.4 2.8 0.0019 17.4 1.9 2.4 1 1 1 2 2 2 2 Reovirus sigma C capsid protein DUF883 PF05957.8 gi|302348435|ref|YP_003816073.1| - 0.023 15.0 3.8 0.11 12.8 1.3 2.7 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) Glyco_transf_21 PF13506.1 gi|302348435|ref|YP_003816073.1| - 0.1 11.9 0.0 0.3 10.3 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferase family 21 Fib_alpha PF08702.5 gi|302348435|ref|YP_003816073.1| - 0.67 10.0 0.1 1 9.4 0.0 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Gp58 PF07902.6 gi|302348435|ref|YP_003816073.1| - 0.77 7.9 3.8 1.2 7.2 2.6 1.2 1 0 0 1 1 1 0 gp58-like protein Baculo_PEP_C PF04513.7 gi|302348435|ref|YP_003816073.1| - 0.86 9.4 5.7 24 4.7 0.1 2.6 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Glycos_transf_2 PF00535.21 gi|302348436|ref|YP_003816074.1| - 3.3e-16 59.4 0.0 4.6e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302348436|ref|YP_003816074.1| - 2.1e-06 27.7 0.1 5.9e-06 26.2 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Raffinose_syn PF05691.7 gi|302348438|ref|YP_003816076.1| - 7.1e-40 136.2 0.0 1.4e-25 88.9 0.0 2.2 2 0 0 2 2 2 2 Raffinose synthase or seed imbibition protein Sip1 Melibiase PF02065.13 gi|302348438|ref|YP_003816076.1| - 2.3e-09 36.4 0.1 4.6e-09 35.4 0.0 1.4 1 1 0 1 1 1 1 Melibiase Glyoxalase_2 PF12681.2 gi|302348438|ref|YP_003816076.1| - 0.034 14.7 0.0 9.5 6.8 0.0 2.9 2 0 0 2 2 2 0 Glyoxalase-like domain Thermopsin PF05317.6 gi|302348440|ref|YP_003816078.1| - 1.2e-27 96.5 30.0 4.9e-18 65.0 9.9 2.9 1 1 1 2 2 2 2 Thermopsin Arch_ATPase PF01637.13 gi|302348441|ref|YP_003816079.1| - 5.2e-25 88.5 0.0 6.7e-25 88.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|302348441|ref|YP_003816079.1| - 1e-09 38.3 0.0 9.7e-05 22.2 0.0 2.6 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|302348441|ref|YP_003816079.1| - 6.7e-08 32.7 0.1 3.7e-07 30.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|302348441|ref|YP_003816079.1| - 0.074 13.0 2.1 0.31 11.0 1.4 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|302348441|ref|YP_003816079.1| - 0.14 12.3 0.0 0.52 10.5 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SBP_bac_1 PF01547.20 gi|302348442|ref|YP_003816080.1| - 2.9e-11 43.6 5.2 4.2e-11 43.1 3.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1469 PF07332.6 gi|302348442|ref|YP_003816080.1| - 0.012 15.2 1.3 0.027 14.2 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF3038 PF11237.3 gi|302348444|ref|YP_003816082.1| - 0.12 12.2 0.1 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) COX1 PF00115.15 gi|302348446|ref|YP_003816084.1| - 1.3e-19 70.1 52.5 1.3e-19 70.1 36.4 2.0 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF488 PF04343.8 gi|302348447|ref|YP_003816085.1| - 2.5e-27 95.6 1.1 2.7e-27 95.5 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 HAD_2 PF13419.1 gi|302348447|ref|YP_003816085.1| - 0.012 15.8 0.2 0.015 15.5 0.1 1.1 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF2576 PF10845.3 gi|302348447|ref|YP_003816085.1| - 0.1 11.8 0.5 0.18 10.9 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2576) NosD PF05048.8 gi|302348448|ref|YP_003816086.1| - 4.4e-18 65.3 0.3 4.4e-18 65.3 0.2 5.5 3 2 2 5 5 5 2 Periplasmic copper-binding protein (NosD) Rifin_STEVOR PF02009.11 gi|302348448|ref|YP_003816086.1| - 0.0011 18.7 5.7 0.0015 18.2 4.0 1.1 1 0 0 1 1 1 1 Rifin/stevor family DUF566 PF04484.7 gi|302348448|ref|YP_003816086.1| - 7.2 6.0 12.3 11 5.4 8.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF566) Sulfatase PF00884.18 gi|302348450|ref|YP_003816088.1| - 3.3e-24 85.6 0.0 7e-24 84.5 0.0 1.5 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|302348450|ref|YP_003816088.1| - 2.6e-07 30.3 0.1 0.0049 16.2 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|302348450|ref|YP_003816088.1| - 0.2 10.0 0.0 0.27 9.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Peptidase_A4 PF01828.12 gi|302348451|ref|YP_003816089.1| - 1e-19 70.4 4.4 1.3e-19 70.1 3.1 1.1 1 0 0 1 1 1 1 Peptidase A4 family HHH_5 PF14520.1 gi|302348452|ref|YP_003816090.1| - 0.076 13.1 0.0 0.087 13.0 0.0 1.1 1 0 0 1 1 1 0 Helix-hairpin-helix domain Methyltransf_21 PF05050.7 gi|302348454|ref|YP_003816092.1| - 7.9e-17 61.6 0.0 1.1e-16 61.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|302348454|ref|YP_003816092.1| - 1.7e-10 41.4 0.0 2.4e-10 40.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|302348454|ref|YP_003816092.1| - 1.4e-05 24.4 0.0 1.9e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|302348454|ref|YP_003816092.1| - 6.7e-05 22.5 0.0 9.9e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|302348454|ref|YP_003816092.1| - 0.00022 21.2 0.1 0.00034 20.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_22 PF13383.1 gi|302348454|ref|YP_003816092.1| - 0.0009 18.8 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|302348454|ref|YP_003816092.1| - 0.001 18.4 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|302348454|ref|YP_003816092.1| - 0.0012 18.4 0.0 0.0013 18.2 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.1 gi|302348454|ref|YP_003816092.1| - 0.0019 17.9 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|302348454|ref|YP_003816092.1| - 0.0063 15.9 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|302348454|ref|YP_003816092.1| - 0.015 14.8 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|302348454|ref|YP_003816092.1| - 0.046 12.7 0.0 0.063 12.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_11 PF08241.7 gi|302348454|ref|YP_003816092.1| - 0.11 13.0 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_21 PF05050.7 gi|302348455|ref|YP_003816093.1| - 5.6e-06 26.3 0.0 6.7e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Agenet PF05641.7 gi|302348455|ref|YP_003816093.1| - 0.11 12.6 0.1 0.15 12.2 0.0 1.4 1 1 0 1 1 1 0 Agenet domain Polysacc_synt PF01943.12 gi|302348456|ref|YP_003816094.1| - 1.1e-11 44.5 15.2 1.1e-11 44.5 10.6 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|302348456|ref|YP_003816094.1| - 1.6e-08 34.3 26.9 1.6e-08 34.3 18.6 2.5 1 1 2 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|302348456|ref|YP_003816094.1| - 0.00033 20.4 13.6 0.00033 20.4 9.4 3.0 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|302348456|ref|YP_003816094.1| - 0.0011 18.6 7.6 0.0011 18.6 5.3 3.7 2 2 1 3 3 3 1 MatE DUF4235 PF14019.1 gi|302348456|ref|YP_003816094.1| - 0.062 13.1 2.9 0.095 12.5 0.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4235) dTDP_sugar_isom PF00908.12 gi|302348457|ref|YP_003816095.1| - 1.5e-68 229.6 0.0 1.6e-68 229.4 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|302348457|ref|YP_003816095.1| - 0.053 13.0 0.0 0.079 12.4 0.0 1.4 1 1 0 1 1 1 0 WxcM-like, C-terminal RmlD_sub_bind PF04321.12 gi|302348458|ref|YP_003816096.1| - 4.9e-62 209.4 0.0 5.5e-62 209.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|302348458|ref|YP_003816096.1| - 1.3e-17 64.0 0.0 2.2e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|302348458|ref|YP_003816096.1| - 1e-07 31.1 0.4 9.1e-07 28.0 0.3 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|302348458|ref|YP_003816096.1| - 2.6e-06 26.5 0.0 4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein NTP_transferase PF00483.18 gi|302348459|ref|YP_003816097.1| - 2.1e-46 158.2 0.0 2.7e-46 157.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|302348459|ref|YP_003816097.1| - 2.9e-11 43.7 0.5 4.7e-11 43.0 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain Fucokinase PF07959.7 gi|302348459|ref|YP_003816097.1| - 0.0041 15.7 0.1 0.0057 15.2 0.1 1.2 1 0 0 1 1 1 1 L-fucokinase Hexapep PF00132.19 gi|302348459|ref|YP_003816097.1| - 0.008 15.6 7.7 0.16 11.5 0.1 5.1 4 1 1 5 5 5 1 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|302348459|ref|YP_003816097.1| - 0.0089 15.5 0.0 0.043 13.3 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Epimerase PF01370.16 gi|302348460|ref|YP_003816098.1| - 1e-61 208.3 0.0 1.4e-61 207.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|302348460|ref|YP_003816098.1| - 7.1e-22 77.6 0.0 8.8e-22 77.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|302348460|ref|YP_003816098.1| - 2e-18 66.0 0.0 2.7e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|302348460|ref|YP_003816098.1| - 1.8e-14 53.3 0.1 8.6e-13 47.7 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|302348460|ref|YP_003816098.1| - 1.7e-11 43.5 0.0 5.7e-11 41.8 0.0 1.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|302348460|ref|YP_003816098.1| - 2.2e-10 40.8 0.0 2.9e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|302348460|ref|YP_003816098.1| - 0.0057 16.5 0.2 0.015 15.2 0.2 1.8 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_8 PF13450.1 gi|302348460|ref|YP_003816098.1| - 0.054 13.5 0.1 0.72 9.9 0.0 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Glycos_transf_2 PF00535.21 gi|302348461|ref|YP_003816099.1| - 1.9e-18 66.7 0.1 2.8e-18 66.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302348461|ref|YP_003816099.1| - 1.6e-07 31.3 0.0 2.5e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|302348461|ref|YP_003816099.1| - 0.00091 18.3 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Methyltransf_21 PF05050.7 gi|302348464|ref|YP_003816102.1| - 1.3e-10 41.5 0.0 1.8e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|302348464|ref|YP_003816102.1| - 3.3e-05 24.4 0.0 5.1e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|302348464|ref|YP_003816102.1| - 0.055 13.1 0.0 0.089 12.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_22 PF13383.1 gi|302348464|ref|YP_003816102.1| - 0.14 11.7 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_1 PF00534.15 gi|302348465|ref|YP_003816103.1| - 5.3e-23 81.2 0.0 8.1e-23 80.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|302348465|ref|YP_003816103.1| - 1.9e-12 47.2 0.0 3.3e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302348465|ref|YP_003816103.1| - 2e-11 44.1 0.0 1.5e-10 41.3 0.0 2.3 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|302348465|ref|YP_003816103.1| - 0.013 15.1 0.0 0.58 9.8 0.0 2.7 3 0 0 3 3 3 0 Glycosyltransferase Family 4 Glyco_transf_20 PF00982.16 gi|302348465|ref|YP_003816103.1| - 0.2 10.1 0.0 0.3 9.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 20 Glycos_transf_2 PF00535.21 gi|302348466|ref|YP_003816104.1| - 4.7e-14 52.4 0.4 9.9e-14 51.3 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302348466|ref|YP_003816104.1| - 6.2e-06 26.1 0.2 1e-05 25.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|302348468|ref|YP_003816106.1| - 0.00013 21.6 0.0 0.00014 21.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302348468|ref|YP_003816106.1| - 0.011 15.6 0.0 0.012 15.4 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|302348469|ref|YP_003816107.1| - 3.1e-26 91.8 0.0 4.7e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302348469|ref|YP_003816107.1| - 6e-13 49.1 0.0 1.1e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|302348469|ref|YP_003816107.1| - 6.2e-07 29.7 0.0 1.1e-05 25.6 0.0 2.7 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|302348469|ref|YP_003816107.1| - 2e-06 27.6 0.1 3.8e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|302348469|ref|YP_003816107.1| - 0.003 17.7 0.0 0.0066 16.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|302348470|ref|YP_003816108.1| - 0.0005 19.5 0.0 0.00058 19.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|302348470|ref|YP_003816108.1| - 0.0044 17.2 0.0 0.0044 17.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|302348471|ref|YP_003816109.1| - 6.8e-11 41.8 0.0 1e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302348471|ref|YP_003816109.1| - 2.6e-05 24.3 0.0 4.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|302348471|ref|YP_003816109.1| - 0.0077 15.9 0.4 0.019 14.7 0.3 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 DUF4318 PF14201.1 gi|302348471|ref|YP_003816109.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4318) Glycos_transf_2 PF00535.21 gi|302348472|ref|YP_003816110.1| - 4e-11 42.8 0.1 7e-11 42.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302348472|ref|YP_003816110.1| - 9.2e-05 22.3 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|302348473|ref|YP_003816111.1| - 1.1e-11 44.7 0.0 1.5e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302348473|ref|YP_003816111.1| - 6e-05 22.9 0.0 0.00017 21.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Toxin_67 PF15545.1 gi|302348473|ref|YP_003816111.1| - 0.036 13.9 0.1 0.081 12.8 0.0 1.6 1 0 0 1 1 1 0 Putative toxin 67 DUF3267 PF11667.3 gi|302348476|ref|YP_003816114.1| - 7.2 6.8 12.6 0.63 10.2 0.3 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3267) Glycos_transf_1 PF00534.15 gi|302348477|ref|YP_003816115.1| - 3.3e-20 72.2 0.1 1.3e-19 70.2 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302348477|ref|YP_003816115.1| - 2.4e-17 63.3 0.1 1.8e-13 50.8 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|302348477|ref|YP_003816115.1| - 1.1e-10 41.5 0.0 3.4e-10 39.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|302348477|ref|YP_003816115.1| - 2.1e-09 37.7 4.3 7.3e-09 35.9 1.2 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|302348477|ref|YP_003816115.1| - 3.5e-09 36.8 0.0 6.5e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|302348479|ref|YP_003816117.1| - 1.2e-19 70.6 0.1 2e-19 69.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302348479|ref|YP_003816117.1| - 3.5e-08 33.5 0.0 7.1e-08 32.5 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|302348479|ref|YP_003816117.1| - 0.00045 19.3 0.0 0.0008 18.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|302348479|ref|YP_003816117.1| - 0.033 13.4 0.0 0.064 12.5 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.15 gi|302348480|ref|YP_003816118.1| - 4e-31 107.7 0.0 1.2e-30 106.1 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302348480|ref|YP_003816118.1| - 3.1e-19 69.4 1.5 8.4e-18 64.8 0.2 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|302348480|ref|YP_003816118.1| - 1e-18 67.9 3.6 1e-18 67.9 2.5 2.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|302348480|ref|YP_003816118.1| - 5.5e-11 42.5 0.6 9.4e-11 41.7 0.4 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|302348480|ref|YP_003816118.1| - 3.3e-06 26.9 0.0 7.2e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|302348480|ref|YP_003816118.1| - 7.1e-06 25.6 0.1 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain PIGA PF08288.7 gi|302348480|ref|YP_003816118.1| - 0.027 14.8 0.1 0.12 12.7 0.0 2.1 2 1 0 2 2 2 0 PIGA (GPI anchor biosynthesis) NifW PF03206.9 gi|302348480|ref|YP_003816118.1| - 0.099 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Nitrogen fixation protein NifW Glycos_transf_1 PF00534.15 gi|302348482|ref|YP_003816120.1| - 2.1e-28 98.8 0.0 3.4e-28 98.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|302348482|ref|YP_003816120.1| - 3.1e-23 82.4 0.7 4.4e-23 81.9 0.5 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|302348482|ref|YP_003816120.1| - 5.1e-21 75.4 7.4 5.1e-21 75.4 5.2 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|302348482|ref|YP_003816120.1| - 2.8e-11 43.7 0.1 8e-10 38.9 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|302348482|ref|YP_003816120.1| - 9.3e-09 35.4 0.0 5.5e-08 32.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|302348482|ref|YP_003816120.1| - 2.4e-08 33.9 0.0 6.3e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|302348482|ref|YP_003816120.1| - 0.0014 18.1 2.0 0.0097 15.4 1.4 2.1 1 1 0 1 1 1 1 Starch synthase catalytic domain PIG-L PF02585.12 gi|302348482|ref|YP_003816120.1| - 0.12 12.9 0.0 0.41 11.1 0.0 1.8 1 1 0 1 1 1 0 GlcNAc-PI de-N-acetylase Glycos_transf_2 PF00535.21 gi|302348483|ref|YP_003816121.1| - 9.5e-15 54.6 0.1 2.1e-14 53.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302348483|ref|YP_003816121.1| - 4.5e-06 26.6 0.0 1.2e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Rifin_STEVOR PF02009.11 gi|302348484|ref|YP_003816122.1| - 0.04 13.5 3.4 0.045 13.3 2.4 1.0 1 0 0 1 1 1 0 Rifin/stevor family MGC-24 PF05283.6 gi|302348484|ref|YP_003816122.1| - 0.51 10.1 17.8 0.61 9.8 12.3 1.1 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) Mucin PF01456.12 gi|302348484|ref|YP_003816122.1| - 0.58 9.9 32.2 0.85 9.3 22.4 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein TMEM154 PF15102.1 gi|302348484|ref|YP_003816122.1| - 6.1 6.5 11.4 9.2 5.9 7.9 1.3 1 0 0 1 1 1 0 TMEM154 protein family SBP_bac_5 PF00496.17 gi|302348485|ref|YP_003816123.1| - 2.5e-06 26.5 0.1 3.1e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF3272 PF11676.3 gi|302348485|ref|YP_003816123.1| - 0.094 12.7 0.1 0.16 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3272) Methyltransf_11 PF08241.7 gi|302348486|ref|YP_003816124.1| - 9.4e-13 48.4 0.0 1.7e-12 47.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|302348486|ref|YP_003816124.1| - 2.7e-07 30.4 0.0 3.5e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|302348486|ref|YP_003816124.1| - 0.00075 19.8 0.0 0.0013 19.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302348486|ref|YP_003816124.1| - 0.0034 16.9 0.0 0.007 15.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|302348486|ref|YP_003816124.1| - 0.0097 16.3 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|302348486|ref|YP_003816124.1| - 0.013 14.6 0.0 0.15 11.1 0.0 2.1 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family SBP_bac_1 PF01547.20 gi|302348488|ref|YP_003816126.1| - 3.7e-22 79.4 0.4 1.6e-21 77.3 0.3 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|302348488|ref|YP_003816126.1| - 1.3e-16 61.2 0.3 2e-16 60.5 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|302348488|ref|YP_003816126.1| - 3.1e-06 26.9 0.4 0.0024 17.5 0.0 2.6 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Glyco_tranf_2_3 PF13641.1 gi|302348488|ref|YP_003816126.1| - 0.0071 16.1 0.6 0.013 15.3 0.4 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Arch_ATPase PF01637.13 gi|302348489|ref|YP_003816127.1| - 1.2e-34 120.0 0.0 2e-34 119.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|302348489|ref|YP_003816127.1| - 1.6e-07 31.2 0.0 0.0062 16.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|302348489|ref|YP_003816127.1| - 8.8e-07 29.0 0.5 1.8e-06 28.0 0.1 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|302348489|ref|YP_003816127.1| - 1.6e-05 25.0 0.0 3.2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain CPT PF07931.7 gi|302348489|ref|YP_003816127.1| - 0.01 15.5 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein Prenylcys_lyase PF07156.9 gi|302348490|ref|YP_003816128.1| - 0.0061 15.4 0.3 0.0061 15.4 0.2 1.0 1 0 0 1 1 1 1 Prenylcysteine lyase GtrA PF04138.9 gi|302348491|ref|YP_003816129.1| - 0.24 11.3 5.2 0.27 11.1 1.0 2.2 1 1 1 2 2 2 0 GtrA-like protein Fer4_7 PF12838.2 gi|302348492|ref|YP_003816130.1| - 9.1e-20 70.7 47.3 1e-09 38.6 7.6 3.3 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|302348492|ref|YP_003816130.1| - 1.1e-18 66.1 35.0 2.6e-08 33.3 3.0 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|302348492|ref|YP_003816130.1| - 1.2e-15 57.2 13.2 1.1e-14 54.1 7.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|302348492|ref|YP_003816130.1| - 2.3e-15 56.5 26.0 1.2e-08 35.0 8.0 2.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|302348492|ref|YP_003816130.1| - 2.5e-15 55.3 43.8 2.4e-07 30.0 3.5 5.8 4 2 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|302348492|ref|YP_003816130.1| - 5.7e-14 51.0 29.4 5.1e-05 22.9 2.3 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|302348492|ref|YP_003816130.1| - 3.4e-13 49.1 48.0 7.9e-07 28.7 7.2 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|302348492|ref|YP_003816130.1| - 1.6e-10 40.7 24.4 3.3e-07 30.0 6.0 3.4 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|302348492|ref|YP_003816130.1| - 2.3e-10 41.0 22.8 0.0061 17.2 0.3 4.2 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|302348492|ref|YP_003816130.1| - 1e-09 37.9 32.4 0.0022 18.1 2.3 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_3 PF12798.2 gi|302348492|ref|YP_003816130.1| - 3.2e-08 33.5 42.9 0.0047 17.4 3.7 5.0 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|302348492|ref|YP_003816130.1| - 1.7e-07 31.1 26.2 0.00086 19.2 5.5 3.4 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|302348492|ref|YP_003816130.1| - 2e-06 28.0 28.6 0.14 12.4 1.7 4.1 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|302348492|ref|YP_003816130.1| - 0.0008 19.9 33.5 0.0019 18.7 3.3 4.7 2 2 1 3 3 3 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|302348492|ref|YP_003816130.1| - 0.022 15.1 3.7 0.022 15.1 2.6 4.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|302348492|ref|YP_003816130.1| - 0.058 13.7 24.6 0.32 11.4 1.0 4.6 4 1 1 5 5 5 0 4Fe-4S single cluster domain PPC PF04151.10 gi|302348493|ref|YP_003816131.1| - 0.21 12.5 9.7 0.57 11.2 1.7 3.0 3 0 0 3 3 3 0 Bacterial pre-peptidase C-terminal domain GPI-anchored PF10342.4 gi|302348496|ref|YP_003816134.1| - 0.097 13.1 5.7 0.49 10.9 2.4 2.1 1 1 1 2 2 2 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family Big_5 PF13205.1 gi|302348496|ref|YP_003816134.1| - 0.25 11.9 5.7 0.37 11.4 3.3 1.7 1 1 1 2 2 2 0 Bacterial Ig-like domain AFOR_C PF01314.13 gi|302348497|ref|YP_003816135.1| - 3.3e-103 345.3 0.2 4.2e-103 344.9 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|302348497|ref|YP_003816135.1| - 2.8e-63 212.9 0.0 4.8e-63 212.1 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain RPEL PF02755.10 gi|302348497|ref|YP_003816135.1| - 0.069 12.5 1.2 0.4 10.0 0.0 2.6 3 0 0 3 3 3 0 RPEL repeat TraD PF06412.6 gi|302348497|ref|YP_003816135.1| - 0.081 12.5 0.0 0.24 10.9 0.0 1.8 1 0 0 1 1 1 0 Conjugal transfer protein TraD Lactamase_B PF00753.22 gi|302348498|ref|YP_003816136.1| - 4.5e-20 72.1 0.2 1.7e-19 70.2 0.1 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|302348498|ref|YP_003816136.1| - 1.2e-06 28.2 0.1 1.6e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF2750 PF11042.3 gi|302348498|ref|YP_003816136.1| - 0.052 13.5 0.3 4.2 7.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2750) Fe-ADH PF00465.14 gi|302348499|ref|YP_003816137.1| - 3e-93 312.3 0.0 3.5e-93 312.1 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|302348499|ref|YP_003816137.1| - 3.6e-11 42.8 0.3 3e-10 39.8 0.0 2.0 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase YbjQ_1 PF01906.12 gi|302348500|ref|YP_003816138.1| - 4e-36 123.6 1.9 4.6e-36 123.4 1.3 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|302348500|ref|YP_003816138.1| - 3.3e-06 27.1 0.3 0.0025 17.8 0.0 2.2 2 0 0 2 2 2 2 Selenium binding protein Fe-ADH PF00465.14 gi|302348500|ref|YP_003816138.1| - 0.027 13.1 0.0 0.031 12.9 0.0 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase DUF504 PF04457.7 gi|302348500|ref|YP_003816138.1| - 0.15 12.2 0.0 0.31 11.2 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF504) Rubrerythrin PF02915.12 gi|302348501|ref|YP_003816139.1| - 0.0079 16.5 0.8 2.5 8.4 0.0 2.7 1 1 2 3 3 3 2 Rubrerythrin MiaE_2 PF13794.1 gi|302348501|ref|YP_003816139.1| - 0.009 15.5 0.3 0.017 14.6 0.2 1.5 1 1 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like Amidohydro_1 PF01979.15 gi|302348503|ref|YP_003816141.1| - 2.4e-40 139.2 2.1 2.8e-40 138.9 1.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|302348503|ref|YP_003816141.1| - 1.8e-20 74.1 12.3 8.5e-19 68.6 8.5 2.8 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|302348503|ref|YP_003816141.1| - 4.7e-13 48.7 0.4 1.5e-12 47.1 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|302348503|ref|YP_003816141.1| - 1.2e-11 44.5 9.0 4.5e-08 32.7 4.9 3.1 2 1 0 2 2 2 2 Amidohydrolase family URO-D PF01208.12 gi|302348503|ref|YP_003816141.1| - 0.0015 17.5 0.1 0.0024 16.8 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) ABC_membrane PF00664.18 gi|302348504|ref|YP_003816142.1| - 4.2e-37 128.0 5.2 5.2e-37 127.7 3.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|302348504|ref|YP_003816142.1| - 1.3e-34 119.4 0.0 2.1e-34 118.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter DUF1854 PF08909.6 gi|302348504|ref|YP_003816142.1| - 4e-19 68.5 0.0 8.5e-19 67.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1854) AAA_21 PF13304.1 gi|302348504|ref|YP_003816142.1| - 3.4e-09 37.0 0.0 0.0012 18.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|302348504|ref|YP_003816142.1| - 8.5e-05 21.8 0.1 0.0065 15.7 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|302348504|ref|YP_003816142.1| - 0.00022 20.6 0.1 0.012 15.0 0.0 2.7 3 0 0 3 3 3 1 AAA domain ABC_membrane_3 PF13748.1 gi|302348504|ref|YP_003816142.1| - 0.00026 20.1 1.9 0.00026 20.1 1.3 2.1 2 1 0 2 2 2 1 ABC transporter transmembrane region AAA_17 PF13207.1 gi|302348504|ref|YP_003816142.1| - 0.0007 20.4 0.4 0.0086 16.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|302348504|ref|YP_003816142.1| - 0.00073 19.5 0.0 0.0022 18.0 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|302348504|ref|YP_003816142.1| - 0.002 17.5 0.1 0.0043 16.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF87 PF01935.12 gi|302348504|ref|YP_003816142.1| - 0.0021 17.8 0.1 0.006 16.4 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|302348504|ref|YP_003816142.1| - 0.011 15.8 0.2 0.081 13.0 0.1 2.4 2 1 0 2 2 1 0 AAA domain AAA_10 PF12846.2 gi|302348504|ref|YP_003816142.1| - 0.011 15.1 0.1 0.037 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.18 gi|302348504|ref|YP_003816142.1| - 0.015 15.2 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Miro PF08477.8 gi|302348504|ref|YP_003816142.1| - 0.024 15.1 0.0 0.047 14.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|302348504|ref|YP_003816142.1| - 0.033 13.8 0.1 0.064 12.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|302348504|ref|YP_003816142.1| - 0.036 13.2 0.4 0.066 12.4 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 IIGP PF05049.8 gi|302348504|ref|YP_003816142.1| - 0.053 12.3 0.1 0.095 11.4 0.0 1.3 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) NTPase_1 PF03266.10 gi|302348504|ref|YP_003816142.1| - 0.057 13.1 0.1 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 NTPase AAA_19 PF13245.1 gi|302348504|ref|YP_003816142.1| - 0.064 13.0 0.7 0.25 11.0 0.0 2.4 3 0 0 3 3 3 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|302348504|ref|YP_003816142.1| - 0.097 12.1 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|302348504|ref|YP_003816142.1| - 0.098 12.2 0.1 1.1 8.7 0.0 2.4 3 0 0 3 3 2 0 AAA domain SbcCD_C PF13558.1 gi|302348504|ref|YP_003816142.1| - 0.11 12.4 0.1 0.37 10.7 0.0 2.0 2 0 0 2 2 1 0 Putative exonuclease SbcCD, C subunit B3_4 PF03483.12 gi|302348505|ref|YP_003816143.1| - 6.4e-24 84.3 0.0 8e-24 84.0 0.0 1.1 1 0 0 1 1 1 1 B3/4 domain FUN14 PF04930.10 gi|302348506|ref|YP_003816144.1| - 0.1 12.8 3.1 0.15 12.3 2.1 1.3 1 0 0 1 1 1 0 FUN14 family DUF1189 PF06691.6 gi|302348506|ref|YP_003816144.1| - 5 6.3 6.9 18 4.5 0.0 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1189) DrsE_2 PF13686.1 gi|302348507|ref|YP_003816145.1| - 3.7e-15 55.9 0.5 5.9e-14 52.0 0.3 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|302348507|ref|YP_003816145.1| - 0.016 15.2 0.1 0.023 14.7 0.0 1.5 1 1 0 1 1 1 0 DsrE/DsrF-like family Linocin_M18 PF04454.7 gi|302348508|ref|YP_003816146.1| - 2e-25 89.1 0.0 2.7e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.12 gi|302348508|ref|YP_003816146.1| - 7.7e-08 32.7 0.0 1.2e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|302348508|ref|YP_003816146.1| - 0.024 14.8 0.1 0.052 13.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) STT3 PF02516.9 gi|302348509|ref|YP_003816147.1| - 4.8e-11 42.3 27.8 1.2e-06 27.7 12.4 3.0 2 1 1 3 3 3 2 Oligosaccharyl transferase STT3 subunit PfkB PF00294.19 gi|302348512|ref|YP_003816150.1| - 3.5e-55 187.2 0.6 5.1e-55 186.7 0.4 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|302348512|ref|YP_003816150.1| - 6.5e-11 41.9 0.1 9.8e-11 41.3 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|302348512|ref|YP_003816150.1| - 0.00075 18.8 0.1 0.0019 17.5 0.1 1.6 2 0 0 2 2 2 1 Carbohydrate kinase EamA PF00892.15 gi|302348514|ref|YP_003816152.1| - 1.2e-19 70.6 26.0 7e-11 42.2 9.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|302348514|ref|YP_003816152.1| - 0.00065 19.8 24.3 0.11 12.7 3.1 3.1 2 2 1 3 3 3 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|302348514|ref|YP_003816152.1| - 0.0068 16.2 3.2 0.1 12.4 0.5 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0546 GATase_6 PF13522.1 gi|302348515|ref|YP_003816153.1| - 3.5e-09 36.7 0.0 5.7e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|302348515|ref|YP_003816153.1| - 2.2e-07 29.8 0.0 2.8e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II HTH_24 PF13412.1 gi|302348516|ref|YP_003816154.1| - 7e-11 41.3 0.0 1.1e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|302348516|ref|YP_003816154.1| - 2.7e-08 33.2 0.0 5.7e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|302348516|ref|YP_003816154.1| - 1.3e-06 28.1 0.0 2.4e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|302348516|ref|YP_003816154.1| - 5.1e-06 26.0 0.0 1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|302348516|ref|YP_003816154.1| - 1.5e-05 24.5 0.0 2.7e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|302348516|ref|YP_003816154.1| - 2.8e-05 23.7 0.0 4.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|302348516|ref|YP_003816154.1| - 0.00027 20.3 0.8 0.00048 19.6 0.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|302348516|ref|YP_003816154.1| - 0.0028 17.9 0.0 0.0049 17.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|302348516|ref|YP_003816154.1| - 0.028 14.3 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1936 PF09151.5 gi|302348516|ref|YP_003816154.1| - 0.091 12.2 0.1 0.15 11.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) DUF2754 PF10953.3 gi|302348518|ref|YP_003816156.1| - 0.0014 18.6 1.9 0.0032 17.4 1.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2754) MNHE PF01899.11 gi|302348518|ref|YP_003816156.1| - 0.85 9.2 7.1 1.4 8.5 4.9 1.5 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit NADHdh-2_N PF12155.3 gi|302348518|ref|YP_003816156.1| - 0.91 9.7 8.6 0.18 11.9 2.9 2.0 1 1 1 2 2 2 0 NADH dehydrogenase subunit 2 N-terminal ATP_synt_H PF05493.8 gi|302348518|ref|YP_003816156.1| - 2.9 8.0 10.0 0.38 10.8 1.4 2.6 3 0 0 3 3 3 0 ATP synthase subunit H CD20 PF04103.10 gi|302348518|ref|YP_003816156.1| - 4.5 7.1 14.1 86 3.0 9.8 2.1 1 1 0 1 1 1 0 CD20-like family Methyltransf_11 PF08241.7 gi|302348519|ref|YP_003816157.1| - 1e-18 67.5 0.0 1.5e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302348519|ref|YP_003816157.1| - 2.1e-14 53.3 0.0 2.7e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|302348519|ref|YP_003816157.1| - 2.5e-10 40.7 0.0 3.5e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|302348519|ref|YP_003816157.1| - 2.9e-10 39.6 0.0 3.5e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|302348519|ref|YP_003816157.1| - 3.5e-10 39.8 0.0 4.3e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|302348519|ref|YP_003816157.1| - 5.2e-10 39.5 0.0 7.5e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|302348519|ref|YP_003816157.1| - 5.4e-09 36.6 0.0 6.5e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|302348519|ref|YP_003816157.1| - 1.5e-06 28.2 0.1 2.1e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|302348519|ref|YP_003816157.1| - 1.4e-05 24.5 0.0 6.7e-05 22.3 0.0 1.8 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|302348519|ref|YP_003816157.1| - 0.00058 19.2 0.0 0.00081 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain FmrO PF07091.6 gi|302348519|ref|YP_003816157.1| - 0.0045 16.0 0.0 0.0053 15.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) PCMT PF01135.14 gi|302348519|ref|YP_003816157.1| - 0.071 12.6 0.0 0.092 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 5-FTHF_cyc-lig PF01812.15 gi|302348520|ref|YP_003816158.1| - 4.7e-35 121.0 0.0 5.6e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family DUF1469 PF07332.6 gi|302348522|ref|YP_003816160.1| - 0.0089 15.7 1.0 0.024 14.3 0.7 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) Mucin PF01456.12 gi|302348522|ref|YP_003816160.1| - 0.054 13.2 13.6 0.1 12.3 9.4 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein SSP160 PF06933.6 gi|302348522|ref|YP_003816160.1| - 1.6 6.6 11.6 2.6 5.9 8.1 1.3 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 SNARE_assoc PF09335.6 gi|302348523|ref|YP_003816161.1| - 4.9e-17 62.2 5.7 4.9e-17 62.2 4.0 2.3 2 1 0 2 2 2 1 SNARE associated Golgi protein ABC_tran PF00005.22 gi|302348524|ref|YP_003816162.1| - 9.3e-25 87.5 0.0 1.6e-24 86.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302348524|ref|YP_003816162.1| - 2.5e-09 37.5 0.0 8.2e-07 29.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|302348524|ref|YP_003816162.1| - 0.0077 15.7 0.2 0.016 14.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|302348524|ref|YP_003816162.1| - 0.014 15.7 0.0 0.018 15.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|302348524|ref|YP_003816162.1| - 0.034 13.7 1.1 0.27 10.8 0.1 2.2 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|302348524|ref|YP_003816162.1| - 0.055 12.8 1.7 0.061 12.7 0.5 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|302348524|ref|YP_003816162.1| - 0.08 12.8 1.1 0.52 10.1 0.8 2.3 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|302348524|ref|YP_003816162.1| - 0.12 12.1 3.9 6.2 6.6 0.2 3.0 3 0 0 3 3 3 0 Part of AAA domain AAA_17 PF13207.1 gi|302348524|ref|YP_003816162.1| - 0.13 13.1 0.1 0.32 11.8 0.0 1.9 1 1 1 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.2 gi|302348525|ref|YP_003816163.1| - 5.7e-16 58.1 17.8 5.7e-16 58.1 12.4 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|302348525|ref|YP_003816163.1| - 1e-12 47.7 19.7 2e-12 46.8 13.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|302348525|ref|YP_003816163.1| - 4.9e-06 25.9 12.1 4.9e-06 25.9 8.4 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|302348525|ref|YP_003816163.1| - 1.6e-05 24.1 16.4 1.6e-05 24.1 11.4 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein F420_ligase PF01996.11 gi|302348526|ref|YP_003816164.1| - 3.3e-39 134.2 0.1 4.8e-39 133.7 0.0 1.2 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Radical_SAM PF04055.16 gi|302348527|ref|YP_003816165.1| - 1.5e-15 57.7 0.0 2.3e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mrr_cat PF04471.7 gi|302348528|ref|YP_003816166.1| - 1.3e-05 24.9 0.0 2.4e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease MarR_2 PF12802.2 gi|302348528|ref|YP_003816166.1| - 0.0031 17.1 0.7 0.11 12.1 0.1 2.7 1 1 1 2 2 2 1 MarR family HTH_24 PF13412.1 gi|302348528|ref|YP_003816166.1| - 0.024 13.9 0.0 0.066 12.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding NERD PF08378.6 gi|302348528|ref|YP_003816166.1| - 0.036 14.3 0.0 0.048 13.9 0.0 1.2 1 0 0 1 1 1 0 Nuclease-related domain HTH_29 PF13551.1 gi|302348528|ref|YP_003816166.1| - 0.065 13.3 0.3 0.84 9.7 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|302348528|ref|YP_003816166.1| - 0.11 12.1 0.8 0.23 11.0 0.1 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|302348528|ref|YP_003816166.1| - 0.12 12.0 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB OrfB_Zn_ribbon PF07282.6 gi|302348530|ref|YP_003816168.1| - 5.7e-19 67.5 0.0 1e-18 66.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|302348530|ref|YP_003816168.1| - 1.9e-06 27.4 0.2 3.2e-06 26.7 0.2 1.3 1 0 0 1 1 1 1 Probable transposase DUF1168 PF06658.7 gi|302348530|ref|YP_003816168.1| - 0.12 11.9 2.5 0.23 11.0 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1168) HA PF03457.9 gi|302348530|ref|YP_003816168.1| - 0.43 10.7 3.4 8.3 6.6 0.0 2.5 2 0 0 2 2 2 0 Helicase associated domain Resolvase PF00239.16 gi|302348531|ref|YP_003816169.1| - 2.7e-18 66.1 0.1 3.9e-18 65.6 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|302348531|ref|YP_003816169.1| - 5.9e-15 55.2 0.6 1.2e-14 54.3 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|302348531|ref|YP_003816169.1| - 6.1e-07 28.8 2.1 8.3e-07 28.4 0.3 2.1 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.1 gi|302348531|ref|YP_003816169.1| - 3.9e-06 26.5 0.1 8.9e-06 25.3 0.1 1.7 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.1 gi|302348531|ref|YP_003816169.1| - 0.00014 21.3 0.2 0.0012 18.3 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|302348531|ref|YP_003816169.1| - 0.00056 19.8 2.2 0.0028 17.6 0.1 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|302348531|ref|YP_003816169.1| - 0.0087 16.2 0.1 0.023 14.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix Phage_AlpA PF05930.7 gi|302348531|ref|YP_003816169.1| - 0.01 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) Exc PF07825.6 gi|302348531|ref|YP_003816169.1| - 0.016 14.9 0.1 0.027 14.2 0.1 1.3 1 0 0 1 1 1 0 Excisionase-like protein DUF3853 PF12964.2 gi|302348531|ref|YP_003816169.1| - 0.046 13.5 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3853) Glyco_hydro_97 PF10566.4 gi|302348531|ref|YP_003816169.1| - 0.076 12.1 0.0 0.08 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycoside hydrolase 97 HTH_8 PF02954.14 gi|302348531|ref|YP_003816169.1| - 0.077 12.5 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family SecA_DEAD PF07517.9 gi|302348531|ref|YP_003816169.1| - 0.12 11.6 0.1 0.22 10.7 0.0 1.5 2 0 0 2 2 2 0 SecA DEAD-like domain MFS_1 PF07690.11 gi|302348534|ref|YP_003816172.1| - 2.3e-23 82.5 63.1 1.4e-18 66.8 25.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|302348534|ref|YP_003816172.1| - 3.6e-05 23.4 7.4 4.1e-05 23.2 0.3 3.5 3 0 0 3 3 3 1 MFS_1 like family MFS_2 PF13347.1 gi|302348534|ref|YP_003816172.1| - 0.00032 19.2 16.6 0.013 13.9 2.1 2.3 1 1 1 2 2 2 2 MFS/sugar transport protein GerA PF03323.8 gi|302348534|ref|YP_003816172.1| - 0.17 9.9 0.6 0.3 9.1 0.4 1.3 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein FPN1 PF06963.7 gi|302348534|ref|YP_003816172.1| - 2 6.7 13.8 0.2 9.9 0.1 2.7 2 1 1 3 3 3 0 Ferroportin1 (FPN1) DUF131 PF01998.12 gi|302348535|ref|YP_003816173.1| - 7.6e-19 66.8 8.6 7.6e-19 66.8 6.0 1.6 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF3816 PF12822.2 gi|302348535|ref|YP_003816173.1| - 0.044 13.6 6.8 0.054 13.3 4.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) Claudin_3 PF06653.6 gi|302348535|ref|YP_003816173.1| - 0.05 13.3 3.4 0.061 13.0 2.3 1.1 1 0 0 1 1 1 0 Tight junction protein, Claudin-like DUF4064 PF13273.1 gi|302348535|ref|YP_003816173.1| - 0.064 13.3 6.4 0.079 13.0 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) TMEM101 PF15111.1 gi|302348535|ref|YP_003816173.1| - 0.074 12.3 0.4 0.074 12.3 0.3 1.8 1 1 1 2 2 2 0 TMEM101 protein family TctB PF07331.6 gi|302348535|ref|YP_003816173.1| - 0.093 12.3 8.4 0.56 9.8 5.9 1.9 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family ATP-synt_8 PF00895.15 gi|302348535|ref|YP_003816173.1| - 0.099 12.8 1.5 8.6 6.6 0.0 2.2 2 0 0 2 2 2 0 ATP synthase protein 8 ABC2_membrane_4 PF12730.2 gi|302348535|ref|YP_003816173.1| - 0.13 11.3 10.9 0.19 10.8 7.6 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2976 PF11190.3 gi|302348535|ref|YP_003816173.1| - 0.25 10.8 13.6 0.034 13.6 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) Sensor PF13796.1 gi|302348535|ref|YP_003816173.1| - 0.43 10.1 9.3 0.62 9.6 6.4 1.2 1 0 0 1 1 1 0 Putative sensor DUF3325 PF11804.3 gi|302348535|ref|YP_003816173.1| - 0.43 10.5 6.9 0.64 9.9 4.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3325) Sigma_reg_N PF13800.1 gi|302348535|ref|YP_003816173.1| - 0.5 10.4 3.7 9.3 6.3 0.7 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal EcsB PF05975.7 gi|302348535|ref|YP_003816173.1| - 0.66 8.3 5.7 0.76 8.1 3.9 1.1 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB TadE PF07811.7 gi|302348535|ref|YP_003816173.1| - 0.83 9.5 14.5 0.21 11.4 0.8 2.5 2 0 0 2 2 2 0 TadE-like protein DUF898 PF05987.8 gi|302348535|ref|YP_003816173.1| - 0.88 8.3 8.7 1.1 8.0 6.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) Claudin_2 PF13903.1 gi|302348535|ref|YP_003816173.1| - 0.91 9.1 7.9 2.7 7.6 5.5 1.6 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction IncA PF04156.9 gi|302348535|ref|YP_003816173.1| - 1.2 8.7 11.9 1.2 8.7 3.2 2.1 2 0 0 2 2 2 0 IncA protein RDD PF06271.7 gi|302348535|ref|YP_003816173.1| - 1.6 8.6 9.8 6.7 6.6 6.8 1.8 1 1 0 1 1 1 0 RDD family DUF1049 PF06305.6 gi|302348535|ref|YP_003816173.1| - 1.7 8.1 7.5 0.86 9.1 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) EphA2_TM PF14575.1 gi|302348535|ref|YP_003816173.1| - 1.8 8.9 3.7 23 5.4 0.9 2.2 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain DUF4381 PF14316.1 gi|302348535|ref|YP_003816173.1| - 1.9 8.5 5.7 14 5.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) OppC_N PF12911.2 gi|302348535|ref|YP_003816173.1| - 3 7.2 10.6 5 6.5 2.7 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF202 PF02656.10 gi|302348535|ref|YP_003816173.1| - 3.4 7.9 8.5 19 5.5 5.9 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) PRA1 PF03208.14 gi|302348535|ref|YP_003816173.1| - 3.8 6.8 5.8 5.1 6.4 4.0 1.2 1 0 0 1 1 1 0 PRA1 family protein Yip1 PF04893.12 gi|302348535|ref|YP_003816173.1| - 4.3 6.7 14.0 6.7 6.1 9.7 1.4 1 1 0 1 1 1 0 Yip1 domain SdpI PF13630.1 gi|302348535|ref|YP_003816173.1| - 5.7 6.7 15.5 6 6.6 4.0 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family Pox_A14 PF05767.7 gi|302348535|ref|YP_003816173.1| - 6.4 6.7 7.2 7.2 6.6 0.1 2.2 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 DUF3899 PF13038.1 gi|302348535|ref|YP_003816173.1| - 7.3 6.8 7.9 3.8 7.7 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) Pro-kuma_activ PF09286.6 gi|302348536|ref|YP_003816174.1| - 3.6e-17 62.7 0.0 5.9e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.17 gi|302348536|ref|YP_003816174.1| - 8.3e-05 21.8 2.3 0.00016 20.9 1.6 1.4 1 0 0 1 1 1 1 Subtilase family DUF1616 PF07760.6 gi|302348537|ref|YP_003816175.1| - 2.9e-06 26.6 0.0 4.6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Ferric_reduct PF01794.14 gi|302348537|ref|YP_003816175.1| - 0.059 13.4 0.2 0.059 13.4 0.1 1.9 2 0 0 2 2 2 0 Ferric reductase like transmembrane component PEP-utilizers_C PF02896.13 gi|302348538|ref|YP_003816176.1| - 8.2e-90 300.6 0.2 1.4e-89 299.8 0.1 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|302348538|ref|YP_003816176.1| - 8.7e-57 192.6 0.0 3.7e-55 187.2 0.0 3.3 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|302348538|ref|YP_003816176.1| - 6.6e-24 83.2 0.5 1.6e-23 82.0 0.4 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain FlgN PF05130.7 gi|302348538|ref|YP_003816176.1| - 0.11 12.7 1.2 0.43 10.8 0.1 2.5 3 0 0 3 3 3 0 FlgN protein HTH_20 PF12840.2 gi|302348538|ref|YP_003816176.1| - 0.2 11.4 1.1 36 4.2 0.1 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain ThiS PF02597.15 gi|302348539|ref|YP_003816177.1| - 7.6e-12 45.4 0.0 8.6e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 ThiS family HemN_C PF06969.11 gi|302348539|ref|YP_003816177.1| - 0.03 14.3 0.1 0.058 13.4 0.1 1.5 2 0 0 2 2 2 0 HemN C-terminal domain AA_permease_2 PF13520.1 gi|302348540|ref|YP_003816178.1| - 8.2e-26 90.4 45.1 1.1e-25 90.0 31.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|302348540|ref|YP_003816178.1| - 5.5e-22 77.7 46.0 9.6e-22 76.9 31.9 1.3 1 1 0 1 1 1 1 Amino acid permease Herpes_HEPA PF03324.9 gi|302348540|ref|YP_003816178.1| - 0.007 16.3 0.9 0.025 14.6 0.1 2.2 1 1 1 2 2 2 1 Herpesvirus DNA helicase/primase complex associated protein Peptidase_M32 PF02074.10 gi|302348541|ref|YP_003816179.1| - 5.9e-187 622.2 1.2 6.7e-187 622.0 0.8 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Aldedh PF00171.17 gi|302348542|ref|YP_003816180.1| - 1.7e-134 448.6 0.0 2.2e-134 448.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|302348542|ref|YP_003816180.1| - 5.1e-08 32.0 0.0 3.7e-07 29.1 0.0 2.4 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF973 PF06157.6 gi|302348543|ref|YP_003816181.1| - 1e-30 106.7 25.9 1.2e-30 106.4 17.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.8 gi|302348543|ref|YP_003816181.1| - 0.15 12.0 30.7 0.38 10.7 9.6 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF996) Trp_oprn_chp PF09534.5 gi|302348543|ref|YP_003816181.1| - 1.4 8.5 16.9 0.85 9.1 7.4 2.1 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF973 PF06157.6 gi|302348544|ref|YP_003816182.1| - 5.2e-32 110.9 18.1 6e-32 110.7 12.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) YtpI PF14007.1 gi|302348544|ref|YP_003816182.1| - 1.9 8.4 17.5 9.5 6.2 0.1 2.5 2 0 0 2 2 2 0 YtpI-like protein COPI_assoc PF08507.5 gi|302348544|ref|YP_003816182.1| - 2 8.0 25.7 1.2 8.8 2.1 3.2 1 1 2 3 3 3 0 COPI associated protein DUF2371 PF10177.4 gi|302348544|ref|YP_003816182.1| - 2.8 7.8 16.8 0.056 13.3 0.6 2.7 2 1 1 3 3 3 0 Uncharacterised conserved protein (DUF2371) SPASM PF13186.1 gi|302348545|ref|YP_003816183.1| - 2.5e-10 40.5 0.3 5.8e-10 39.3 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain PGM_PMM_I PF02878.11 gi|302348546|ref|YP_003816184.1| - 7.3e-43 145.3 0.1 1.2e-42 144.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|302348546|ref|YP_003816184.1| - 1e-25 90.0 0.0 1.9e-25 89.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|302348546|ref|YP_003816184.1| - 1.5e-14 53.9 0.0 3.1e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|302348546|ref|YP_003816184.1| - 8.3e-12 44.9 0.2 1.9e-11 43.7 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Trm112p PF03966.11 gi|302348547|ref|YP_003816185.1| - 9.2e-14 51.5 0.5 1.5e-13 50.9 0.4 1.3 1 0 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.1 gi|302348547|ref|YP_003816185.1| - 0.085 13.1 5.2 0.81 10.0 3.6 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|302348547|ref|YP_003816185.1| - 0.29 10.4 5.0 0.53 9.6 0.0 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding PHD PF00628.24 gi|302348547|ref|YP_003816185.1| - 0.79 9.4 3.7 1.4 8.6 0.9 2.3 2 0 0 2 2 2 0 PHD-finger DUF35_N PF12172.3 gi|302348547|ref|YP_003816185.1| - 1 9.3 7.8 1.5 8.8 0.1 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prim_Zn_Ribbon PF08273.7 gi|302348547|ref|YP_003816185.1| - 2.2 8.4 4.4 14 5.8 0.0 2.8 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase DZR PF12773.2 gi|302348547|ref|YP_003816185.1| - 6.5 6.6 7.2 51 3.7 5.1 2.1 1 1 0 1 1 1 0 Double zinc ribbon Cdc6_C PF09079.6 gi|302348548|ref|YP_003816186.1| - 4e-20 71.3 0.5 1.7e-19 69.3 0.0 2.2 3 0 0 3 3 3 1 CDC6, C terminal AAA_16 PF13191.1 gi|302348548|ref|YP_003816186.1| - 4.7e-13 49.5 2.0 4.9e-11 42.9 0.0 3.2 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|302348548|ref|YP_003816186.1| - 1.1e-12 48.2 0.0 3.3e-12 46.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|302348548|ref|YP_003816186.1| - 4.3e-07 30.1 0.0 3.4e-06 27.2 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|302348548|ref|YP_003816186.1| - 6.9e-07 29.1 0.2 5.9e-06 26.1 0.2 2.1 1 1 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|302348548|ref|YP_003816186.1| - 0.00029 19.8 0.0 0.00039 19.3 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_32 PF13654.1 gi|302348548|ref|YP_003816186.1| - 0.00031 19.5 0.4 0.032 12.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain RHH_1 PF01402.16 gi|302348548|ref|YP_003816186.1| - 0.0025 17.6 0.3 0.013 15.3 0.0 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DEAD PF00270.24 gi|302348548|ref|YP_003816186.1| - 0.0038 16.7 0.2 0.44 10.0 0.0 2.5 1 1 1 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|302348548|ref|YP_003816186.1| - 0.0087 15.0 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|302348548|ref|YP_003816186.1| - 0.01 16.6 1.0 0.15 12.9 0.1 2.9 1 1 0 2 2 2 0 AAA domain DUF815 PF05673.8 gi|302348548|ref|YP_003816186.1| - 0.032 13.1 0.0 0.088 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|302348548|ref|YP_003816186.1| - 0.045 13.5 0.0 0.15 11.8 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain Bac_DnaA PF00308.13 gi|302348548|ref|YP_003816186.1| - 0.052 13.1 0.0 8.1 6.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_25 PF13481.1 gi|302348548|ref|YP_003816186.1| - 0.071 12.5 4.8 1.5 8.1 0.2 3.1 2 1 0 2 2 2 0 AAA domain PCP_red PF08369.5 gi|302348548|ref|YP_003816186.1| - 0.17 11.7 2.1 1.8 8.5 0.2 3.3 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit Sulf_transp PF04143.9 gi|302348549|ref|YP_003816187.1| - 3e-13 49.5 23.3 1.6e-09 37.6 4.8 4.7 6 0 0 6 6 6 2 Sulphur transport ORMDL PF04061.9 gi|302348549|ref|YP_003816187.1| - 0.0049 16.4 0.2 0.038 13.5 0.0 2.3 1 1 1 2 2 2 1 ORMDL family DUF4191 PF13829.1 gi|302348549|ref|YP_003816187.1| - 0.86 8.6 0.0 0.86 8.6 0.0 3.1 4 1 1 5 5 5 0 Domain of unknown function (DUF4191) Herpes_US9 PF06072.6 gi|302348549|ref|YP_003816187.1| - 1.9 8.3 10.4 1.2 9.0 0.0 4.7 5 0 0 5 5 5 0 Alphaherpesvirus tegument protein US9 Adeno_E3_CR2 PF02439.10 gi|302348549|ref|YP_003816187.1| - 8.3 6.0 6.8 4.2 7.0 0.5 2.8 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 MFS_1 PF07690.11 gi|302348550|ref|YP_003816188.1| - 3.7e-07 29.1 52.8 4e-06 25.7 20.4 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1414 PF07208.6 gi|302348550|ref|YP_003816188.1| - 0.029 14.0 0.6 0.029 14.0 0.4 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1414) DUF2897 PF11446.3 gi|302348550|ref|YP_003816188.1| - 8.6 6.2 6.6 16 5.3 1.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2897) Sua5_yciO_yrdC PF01300.13 gi|302348551|ref|YP_003816189.1| - 6.4e-61 204.7 0.0 4.3e-60 202.0 0.0 1.9 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.8 gi|302348551|ref|YP_003816189.1| - 6.1e-24 84.4 0.0 9.6e-24 83.8 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Se-cys_synth_N PF12390.3 gi|302348552|ref|YP_003816190.1| - 0.083 12.9 1.2 0.13 12.3 0.8 1.6 1 1 0 1 1 1 0 Selenocysteine synthase N terminal PEGA PF08308.6 gi|302348553|ref|YP_003816191.1| - 1.1e-10 41.1 7.0 6.1e-05 22.7 0.3 3.0 2 0 0 2 2 2 2 PEGA domain Neisseria_TspB PF05616.8 gi|302348553|ref|YP_003816191.1| - 0.54 8.5 1.2 1 7.6 0.9 1.3 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein TENA_THI-4 PF03070.11 gi|302348554|ref|YP_003816192.1| - 0.0017 18.1 0.0 0.055 13.2 0.0 2.1 2 0 0 2 2 2 2 TENA/THI-4/PQQC family MFS_1 PF07690.11 gi|302348555|ref|YP_003816193.1| - 6.7e-18 64.5 50.7 4e-12 45.5 25.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|302348555|ref|YP_003816193.1| - 2.9 5.9 17.1 0.05 11.7 0.8 2.6 2 1 1 3 3 3 0 Transmembrane secretion effector DUF3834 PF12916.2 gi|302348556|ref|YP_003816194.1| - 5.3e-62 208.4 0.0 6e-62 208.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) SBP_bac_3 PF00497.15 gi|302348556|ref|YP_003816194.1| - 0.014 14.6 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Lactamase_B PF00753.22 gi|302348558|ref|YP_003816196.1| - 4.8e-20 72.0 0.1 7.1e-20 71.4 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|302348558|ref|YP_003816196.1| - 1.2e-05 24.9 0.0 1.6e-05 24.5 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DrsE PF02635.10 gi|302348559|ref|YP_003816197.1| - 0.00028 20.9 0.0 0.00039 20.4 0.0 1.3 1 1 0 1 1 1 1 DsrE/DsrF-like family tRNA_anti-codon PF01336.20 gi|302348560|ref|YP_003816198.1| - 1.6e-05 24.6 0.1 2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain AFOR_C PF01314.13 gi|302348561|ref|YP_003816199.1| - 8.2e-114 380.2 0.0 1e-113 379.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|302348561|ref|YP_003816199.1| - 1.2e-76 256.5 0.2 2.1e-76 255.7 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Vicilin_N PF04702.7 gi|302348562|ref|YP_003816200.1| - 0.08 12.5 1.2 0.08 12.5 0.9 1.1 1 0 0 1 1 1 0 Vicilin N terminal region PALP PF00291.20 gi|302348563|ref|YP_003816201.1| - 5.4e-48 163.7 2.3 6.1e-48 163.6 1.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.1 gi|302348563|ref|YP_003816201.1| - 0.0023 17.0 2.3 0.0053 15.9 1.6 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Adenine_deam_C PF13382.1 gi|302348563|ref|YP_003816201.1| - 0.029 13.5 0.0 0.052 12.6 0.0 1.3 1 0 0 1 1 1 0 Adenine deaminase C-terminal domain Nudix_N_2 PF14803.1 gi|302348563|ref|YP_003816201.1| - 0.03 14.0 2.5 5.4 6.7 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal HypA PF01155.14 gi|302348563|ref|YP_003816201.1| - 0.033 13.8 0.3 0.06 13.0 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|302348563|ref|YP_003816201.1| - 0.05 13.4 0.2 0.095 12.5 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|302348563|ref|YP_003816201.1| - 0.27 10.7 5.4 1 8.9 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|302348563|ref|YP_003816201.1| - 0.43 10.2 1.7 0.95 9.1 1.2 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|302348563|ref|YP_003816201.1| - 0.73 9.4 5.8 2.3 7.8 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|302348563|ref|YP_003816201.1| - 1.1 8.6 5.3 3 7.2 3.1 2.1 2 1 0 2 2 2 0 TFIIB zinc-binding zf-FPG_IleRS PF06827.9 gi|302348563|ref|YP_003816201.1| - 1.3 8.7 5.8 2.8 7.6 0.3 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DNA_ligase_ZBD PF03119.11 gi|302348563|ref|YP_003816201.1| - 4.7 7.0 6.7 0.45 10.2 0.2 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-CSL PF05207.8 gi|302348563|ref|YP_003816201.1| - 5.1 6.6 5.2 27 4.3 3.9 1.9 1 1 1 2 2 2 0 CSL zinc finger ThiF PF00899.16 gi|302348564|ref|YP_003816202.1| - 5.9e-38 129.7 0.7 1e-37 129.0 0.5 1.4 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|302348564|ref|YP_003816202.1| - 2.8e-18 65.2 0.1 5.2e-18 64.4 0.1 1.5 1 0 0 1 1 1 1 MoeZ/MoeB domain 2-Hacid_dh_C PF02826.14 gi|302348564|ref|YP_003816202.1| - 0.0077 15.3 0.0 0.11 11.6 0.0 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|302348564|ref|YP_003816202.1| - 0.017 14.2 0.2 0.025 13.6 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain ELFV_dehydrog PF00208.16 gi|302348564|ref|YP_003816202.1| - 0.048 13.2 0.1 0.085 12.4 0.1 1.4 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_7 PF13241.1 gi|302348564|ref|YP_003816202.1| - 0.055 13.7 0.2 0.15 12.3 0.2 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|302348564|ref|YP_003816202.1| - 0.06 13.0 0.8 0.13 11.8 0.6 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|302348564|ref|YP_003816202.1| - 0.067 12.5 0.1 0.17 11.2 0.0 1.7 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ApbA PF02558.11 gi|302348564|ref|YP_003816202.1| - 0.099 12.0 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UBACT PF02134.16 gi|302348564|ref|YP_003816202.1| - 0.14 11.7 0.0 0.81 9.2 0.1 2.1 2 0 0 2 2 2 0 Repeat in ubiquitin-activating (UBA) protein Shikimate_DH PF01488.15 gi|302348564|ref|YP_003816202.1| - 0.23 11.5 1.4 0.99 9.4 0.1 2.5 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase T2SE PF00437.15 gi|302348565|ref|YP_003816203.1| - 1.5e-15 56.8 0.0 2.7e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|302348565|ref|YP_003816203.1| - 7.9e-06 26.6 0.0 5.8e-05 23.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|302348565|ref|YP_003816203.1| - 6.6e-05 23.2 0.0 0.00023 21.4 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|302348565|ref|YP_003816203.1| - 7.2e-05 22.2 0.0 0.00016 21.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|302348565|ref|YP_003816203.1| - 0.0006 18.9 0.0 0.0015 17.6 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|302348565|ref|YP_003816203.1| - 0.00093 18.9 0.0 0.0033 17.1 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|302348565|ref|YP_003816203.1| - 0.0012 18.8 0.0 0.0056 16.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain ArgK PF03308.11 gi|302348565|ref|YP_003816203.1| - 0.0022 16.7 0.0 0.0044 15.8 0.0 1.4 1 0 0 1 1 1 1 ArgK protein AAA_30 PF13604.1 gi|302348565|ref|YP_003816203.1| - 0.0031 17.1 0.1 0.0063 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|302348565|ref|YP_003816203.1| - 0.0033 16.8 0.0 0.0086 15.4 0.0 1.7 1 1 0 1 1 1 1 Thymidylate kinase IstB_IS21 PF01695.12 gi|302348565|ref|YP_003816203.1| - 0.0036 16.7 0.0 0.0067 15.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|302348565|ref|YP_003816203.1| - 0.0042 16.9 0.0 0.014 15.2 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|302348565|ref|YP_003816203.1| - 0.0046 16.9 0.0 0.022 14.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|302348565|ref|YP_003816203.1| - 0.0063 16.1 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|302348565|ref|YP_003816203.1| - 0.0077 16.5 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ATP_bind_1 PF03029.12 gi|302348565|ref|YP_003816203.1| - 0.0081 15.7 0.1 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.13 gi|302348565|ref|YP_003816203.1| - 0.0088 15.5 0.0 0.021 14.3 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|302348565|ref|YP_003816203.1| - 0.0094 15.8 0.0 0.025 14.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|302348565|ref|YP_003816203.1| - 0.01 15.5 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|302348565|ref|YP_003816203.1| - 0.012 15.7 0.0 0.041 14.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA PF00004.24 gi|302348565|ref|YP_003816203.1| - 0.015 15.5 0.0 0.038 14.1 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|302348565|ref|YP_003816203.1| - 0.016 14.3 0.0 0.044 12.8 0.0 1.7 1 0 0 1 1 1 0 KaiC KTI12 PF08433.5 gi|302348565|ref|YP_003816203.1| - 0.017 14.3 0.0 0.061 12.5 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|302348565|ref|YP_003816203.1| - 0.017 14.8 0.0 0.13 12.0 0.0 2.5 3 0 0 3 3 2 0 NTPase DnaB_C PF03796.10 gi|302348565|ref|YP_003816203.1| - 0.029 13.2 0.4 0.14 11.0 0.0 2.0 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain RuvB_N PF05496.7 gi|302348565|ref|YP_003816203.1| - 0.03 13.3 0.0 0.21 10.5 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus NACHT PF05729.7 gi|302348565|ref|YP_003816203.1| - 0.033 13.8 0.0 0.085 12.5 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_10 PF12846.2 gi|302348565|ref|YP_003816203.1| - 0.047 13.1 0.0 0.085 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain APS_kinase PF01583.15 gi|302348565|ref|YP_003816203.1| - 0.059 13.0 0.0 1.1 8.9 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase CbiA PF01656.18 gi|302348565|ref|YP_003816203.1| - 0.071 12.5 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|302348565|ref|YP_003816203.1| - 0.072 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PRK PF00485.13 gi|302348565|ref|YP_003816203.1| - 0.094 12.2 0.1 0.18 11.3 0.0 1.4 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Sigma54_activ_2 PF14532.1 gi|302348565|ref|YP_003816203.1| - 0.13 12.3 0.0 0.34 10.9 0.0 1.7 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_29 PF13555.1 gi|302348565|ref|YP_003816203.1| - 0.15 11.6 0.2 0.4 10.2 0.0 1.7 2 0 0 2 2 1 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.13 gi|302348565|ref|YP_003816203.1| - 0.17 11.3 0.0 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Amidohydro_5 PF13594.1 gi|302348566|ref|YP_003816204.1| - 0.00028 20.6 2.2 0.0007 19.3 1.5 1.8 1 1 0 1 1 1 1 Amidohydrolase DUF340 PF03956.8 gi|302348567|ref|YP_003816205.1| - 0.012 14.9 4.1 0.013 14.8 2.8 1.0 1 0 0 1 1 1 0 Membrane protein of unknown function (DUF340) ABC2_membrane_2 PF12679.2 gi|302348567|ref|YP_003816205.1| - 0.36 9.6 5.3 0.43 9.3 3.6 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein EpuA PF11772.3 gi|302348567|ref|YP_003816205.1| - 0.37 10.2 8.9 0.54 9.7 0.1 2.5 2 1 1 3 3 3 0 DNA-directed RNA polymerase subunit beta DUF1469 PF07332.6 gi|302348567|ref|YP_003816205.1| - 0.5 10.1 6.8 0.27 10.9 3.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) ABC2_membrane_4 PF12730.2 gi|302348567|ref|YP_003816205.1| - 1.2 8.2 8.2 1.4 7.9 5.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2628 PF10947.3 gi|302348567|ref|YP_003816205.1| - 2 8.2 4.6 2.4 7.9 1.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) DUF1427 PF07235.6 gi|302348567|ref|YP_003816205.1| - 2.9 8.0 5.9 32 4.6 4.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1427) DUF340 PF03956.8 gi|302348568|ref|YP_003816206.1| - 4.3e-37 127.2 10.2 4.8e-37 127.0 7.1 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function (DUF340) dUTPase PF00692.14 gi|302348569|ref|YP_003816207.1| - 2.3e-09 36.7 0.0 3.3e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|302348569|ref|YP_003816207.1| - 0.0011 17.5 0.1 0.34 9.2 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DrsE PF02635.10 gi|302348570|ref|YP_003816208.1| - 6.3e-16 58.5 0.1 7e-16 58.3 0.1 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|302348570|ref|YP_003816208.1| - 0.0013 18.5 0.1 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DUF2761 PF10959.3 gi|302348570|ref|YP_003816208.1| - 0.034 13.7 0.0 0.34 10.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2761) Glyco_hydro_31 PF01055.21 gi|302348571|ref|YP_003816209.1| - 1.7e-104 350.0 0.0 2.2e-104 349.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|302348571|ref|YP_003816209.1| - 4.7e-13 48.7 0.3 1.1e-12 47.5 0.2 1.7 1 0 0 1 1 1 1 Galactose mutarotase-like Melibiase PF02065.13 gi|302348571|ref|YP_003816209.1| - 0.0058 15.3 0.0 0.0084 14.8 0.0 1.1 1 0 0 1 1 1 1 Melibiase AA_permease_2 PF13520.1 gi|302348572|ref|YP_003816210.1| - 5.5e-44 150.3 59.9 5.5e-44 150.3 41.6 2.2 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|302348572|ref|YP_003816210.1| - 3.1e-31 108.2 57.6 3.1e-31 108.2 40.0 2.2 1 1 1 2 2 2 1 Amino acid permease XhlA PF10779.4 gi|302348572|ref|YP_003816210.1| - 7.2 6.6 8.2 1.5 8.8 0.6 2.9 2 0 0 2 2 2 0 Haemolysin XhlA Glycos_transf_2 PF00535.21 gi|302348573|ref|YP_003816211.1| - 9.5e-24 83.9 0.1 1.7e-23 83.1 0.0 1.3 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|302348573|ref|YP_003816211.1| - 9.3e-07 28.8 0.0 1.2e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|302348573|ref|YP_003816211.1| - 0.013 14.5 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|302348573|ref|YP_003816211.1| - 0.046 14.0 0.0 0.14 12.5 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase family 2 NurA PF09376.5 gi|302348574|ref|YP_003816212.1| - 0.0048 16.4 0.0 0.0066 15.9 0.0 1.3 1 0 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|302348575|ref|YP_003816213.1| - 1.7e-20 73.7 0.0 9e-12 45.0 0.0 2.7 3 0 0 3 3 3 2 AAA-like domain DUF87 PF01935.12 gi|302348575|ref|YP_003816213.1| - 1.3e-10 41.4 0.0 5.1e-10 39.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|302348575|ref|YP_003816213.1| - 4e-10 39.5 0.7 4.9e-05 22.9 0.1 2.6 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF853 PF05872.7 gi|302348575|ref|YP_003816213.1| - 7.5e-10 37.7 0.0 3.5e-05 22.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|302348575|ref|YP_003816213.1| - 8.7e-08 31.1 0.0 2.5e-07 29.6 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|302348575|ref|YP_003816213.1| - 3.2e-07 30.6 0.1 0.00059 20.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|302348575|ref|YP_003816213.1| - 2e-06 27.9 0.0 0.024 14.7 0.0 3.1 2 1 0 2 2 2 2 AAA domain Zot PF05707.7 gi|302348575|ref|YP_003816213.1| - 6.7e-05 22.4 0.0 0.0027 17.1 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_25 PF13481.1 gi|302348575|ref|YP_003816213.1| - 0.00038 19.8 0.0 0.48 9.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|302348575|ref|YP_003816213.1| - 0.001 19.0 0.0 0.6 10.0 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|302348575|ref|YP_003816213.1| - 0.0014 18.3 0.0 0.0035 17.0 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ResIII PF04851.10 gi|302348575|ref|YP_003816213.1| - 0.0018 18.1 0.3 0.33 10.7 0.1 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit cobW PF02492.14 gi|302348575|ref|YP_003816213.1| - 0.0027 17.1 0.1 0.0051 16.2 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|302348575|ref|YP_003816213.1| - 0.003 17.0 0.1 0.0063 16.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|302348575|ref|YP_003816213.1| - 0.0033 18.2 0.0 0.012 16.4 0.0 2.0 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|302348575|ref|YP_003816213.1| - 0.0034 16.3 0.2 0.0076 15.1 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein Miro PF08477.8 gi|302348575|ref|YP_003816213.1| - 0.0042 17.5 0.0 0.02 15.3 0.0 2.1 2 0 0 2 2 2 1 Miro-like protein ABC_tran PF00005.22 gi|302348575|ref|YP_003816213.1| - 0.0064 16.7 0.0 0.016 15.5 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.1 gi|302348575|ref|YP_003816213.1| - 0.0067 16.7 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|302348575|ref|YP_003816213.1| - 0.007 15.3 0.9 0.52 9.2 0.0 2.4 3 0 0 3 3 2 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|302348575|ref|YP_003816213.1| - 0.011 15.3 0.1 0.036 13.7 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.7 gi|302348575|ref|YP_003816213.1| - 0.021 13.9 0.0 0.05 12.6 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.1 gi|302348575|ref|YP_003816213.1| - 0.028 14.1 0.0 0.076 12.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|302348575|ref|YP_003816213.1| - 0.033 14.4 0.0 0.094 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|302348575|ref|YP_003816213.1| - 0.038 13.9 0.1 0.17 11.8 0.0 2.2 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.1 gi|302348575|ref|YP_003816213.1| - 0.04 13.8 0.0 0.36 10.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|302348575|ref|YP_003816213.1| - 0.084 12.8 0.0 0.24 11.3 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase PV-1 PF06637.6 gi|302348575|ref|YP_003816213.1| - 0.086 11.4 0.0 0.14 10.6 0.0 1.2 1 0 0 1 1 1 0 PV-1 protein (PLVAP) Mg_chelatase PF01078.16 gi|302348575|ref|YP_003816213.1| - 0.16 11.0 0.1 0.46 9.6 0.0 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Arf PF00025.16 gi|302348575|ref|YP_003816213.1| - 0.16 11.1 0.1 0.31 10.2 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family SRP54 PF00448.17 gi|302348575|ref|YP_003816213.1| - 0.17 11.3 0.1 0.34 10.3 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PduV-EutP PF10662.4 gi|302348575|ref|YP_003816213.1| - 0.21 11.0 0.1 0.37 10.2 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation OrfB_IS605 PF01385.14 gi|302348576|ref|YP_003816214.1| - 0.0035 16.7 0.0 0.0035 16.7 0.0 1.0 1 0 0 1 1 1 1 Probable transposase Cob_adeno_trans PF01923.13 gi|302348578|ref|YP_003816216.1| - 1.5e-44 151.6 0.0 1.7e-44 151.5 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Rnk_N PF14760.1 gi|302348578|ref|YP_003816216.1| - 0.039 14.0 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Rnk N-terminus Aldedh PF00171.17 gi|302348579|ref|YP_003816217.1| - 3.5e-38 131.1 0.0 4.8e-38 130.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family PCNA_N PF00705.13 gi|302348580|ref|YP_003816218.1| - 1.3e-12 47.3 0.0 2.5e-12 46.4 0.0 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|302348580|ref|YP_003816218.1| - 1.5e-05 24.9 0.2 0.0035 17.2 0.0 2.5 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|302348580|ref|YP_003816218.1| - 0.014 14.5 0.0 0.044 12.8 0.0 1.7 2 1 0 3 3 3 0 Rad9 FYDLN_acid PF09538.5 gi|302348580|ref|YP_003816218.1| - 0.34 11.5 7.7 0.74 10.4 5.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) UbiA PF01040.13 gi|302348581|ref|YP_003816219.1| - 5.4e-33 114.3 18.0 7.8e-33 113.7 12.5 1.2 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF3021 PF11457.3 gi|302348581|ref|YP_003816219.1| - 0.16 11.8 2.2 1.2 9.0 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3021) TauE PF01925.14 gi|302348582|ref|YP_003816220.1| - 3.2e-33 115.1 37.2 3.8e-33 114.9 25.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MTHFR PF02219.12 gi|302348583|ref|YP_003816221.1| - 0.0035 16.4 0.0 0.0056 15.8 0.0 1.4 1 1 0 1 1 1 1 Methylenetetrahydrofolate reductase MFS_1 PF07690.11 gi|302348584|ref|YP_003816222.1| - 5.1e-12 45.1 38.7 6.2e-12 44.8 26.5 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|302348584|ref|YP_003816222.1| - 0.072 12.8 0.2 0.072 12.8 0.2 3.2 3 1 0 3 3 3 0 MFS_1 like family DHDPS PF00701.17 gi|302348585|ref|YP_003816223.1| - 1.8e-59 200.6 0.0 2.3e-59 200.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family GalKase_gal_bdg PF10509.4 gi|302348587|ref|YP_003816225.1| - 8.5e-18 63.3 0.0 2.4e-17 61.9 0.0 1.8 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_N PF00288.21 gi|302348587|ref|YP_003816225.1| - 9e-14 51.3 0.7 2.4e-13 49.9 0.5 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|302348587|ref|YP_003816225.1| - 2.3e-12 46.9 0.1 1e-11 44.8 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal DUF1940 PF09155.5 gi|302348587|ref|YP_003816225.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1940) GalP_UDP_transf PF01087.17 gi|302348588|ref|YP_003816226.1| - 1.4e-29 103.4 0.0 2.4e-29 102.6 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|302348588|ref|YP_003816226.1| - 1.3e-12 47.5 0.0 2.1e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|302348588|ref|YP_003816226.1| - 0.0015 18.6 0.0 0.006 16.7 0.0 1.8 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.18 gi|302348588|ref|YP_003816226.1| - 0.0017 18.8 0.0 0.047 14.2 0.0 2.2 2 0 0 2 2 2 1 HIT domain Acylphosphatase PF00708.13 gi|302348590|ref|YP_003816228.1| - 8.6e-25 86.6 0.0 1e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.7 gi|302348590|ref|YP_003816228.1| - 0.092 12.4 0.0 0.15 11.7 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1115) AIRS_C PF02769.17 gi|302348591|ref|YP_003816229.1| - 7.8e-09 35.7 0.0 5.2e-08 33.0 0.0 2.3 2 1 0 2 2 2 1 AIR synthase related protein, C-terminal domain PALP PF00291.20 gi|302348592|ref|YP_003816230.1| - 3.4e-48 164.4 0.0 5.2e-48 163.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Metallophos PF00149.23 gi|302348593|ref|YP_003816231.1| - 6.3e-25 87.7 0.2 9.7e-25 87.1 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|302348593|ref|YP_003816231.1| - 0.0019 18.0 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Glyco_tranf_2_3 PF13641.1 gi|302348594|ref|YP_003816232.1| - 4.8e-07 29.8 0.0 1.7e-06 27.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|302348594|ref|YP_003816232.1| - 3e-06 27.0 0.0 5.3e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|302348594|ref|YP_003816232.1| - 0.033 13.4 0.0 0.055 12.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 ATP-synt_C PF00137.16 gi|302348594|ref|YP_003816232.1| - 3.6 7.5 6.5 1.3 8.9 2.0 2.0 2 0 0 2 2 2 0 ATP synthase subunit C Glyco_transf_20 PF00982.16 gi|302348595|ref|YP_003816233.1| - 1.1e-161 538.5 0.0 1.3e-161 538.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.11 gi|302348595|ref|YP_003816233.1| - 1.2e-50 171.6 0.0 1.7e-50 171.1 0.0 1.2 1 0 0 1 1 1 1 Trehalose-phosphatase Glycos_transf_1 PF00534.15 gi|302348595|ref|YP_003816233.1| - 3.1e-05 23.4 0.2 0.00059 19.2 0.1 2.3 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302348595|ref|YP_003816233.1| - 0.00012 22.2 0.0 0.00044 20.4 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferases group 1 Hydrolase_3 PF08282.7 gi|302348595|ref|YP_003816233.1| - 0.00057 19.5 0.0 0.0012 18.4 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glyco_transf_5 PF08323.6 gi|302348595|ref|YP_003816233.1| - 0.039 13.4 0.0 0.12 11.8 0.0 1.8 2 0 0 2 2 2 0 Starch synthase catalytic domain S6PP PF05116.8 gi|302348595|ref|YP_003816233.1| - 0.041 13.1 0.0 6.2 6.0 0.0 2.4 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Amidase PF01425.16 gi|302348596|ref|YP_003816234.1| - 1.5e-96 323.9 0.1 2.2e-96 323.4 0.1 1.2 1 0 0 1 1 1 1 Amidase Peripla_BP_6 PF13458.1 gi|302348597|ref|YP_003816235.1| - 5.1e-34 118.1 2.0 7.1e-34 117.6 1.4 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|302348597|ref|YP_003816235.1| - 5.4e-09 35.2 0.7 2e-08 33.4 0.3 1.8 2 0 0 2 2 2 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|302348597|ref|YP_003816235.1| - 0.0044 15.8 0.6 0.0079 15.0 0.4 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region BPD_transp_2 PF02653.11 gi|302348598|ref|YP_003816236.1| - 1.2e-29 103.1 48.4 1.4e-29 102.8 33.6 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ISK_Channel PF02060.10 gi|302348598|ref|YP_003816236.1| - 1.3 8.6 4.0 0.44 10.1 0.2 2.0 2 0 0 2 2 2 0 Slow voltage-gated potassium channel BPD_transp_2 PF02653.11 gi|302348599|ref|YP_003816237.1| - 3e-31 108.3 45.4 3e-31 108.3 31.4 1.3 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|302348600|ref|YP_003816238.1| - 1.9e-28 99.4 0.0 2.4e-28 99.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302348600|ref|YP_003816238.1| - 4.7e-12 46.4 0.5 4.9e-07 30.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|302348600|ref|YP_003816238.1| - 4.1e-05 22.9 0.2 0.00023 20.4 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|302348600|ref|YP_003816238.1| - 0.00022 21.5 0.2 0.00032 21.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|302348600|ref|YP_003816238.1| - 0.00027 20.5 0.4 0.4 10.0 0.2 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|302348600|ref|YP_003816238.1| - 0.003 17.0 0.6 0.0055 16.2 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.17 gi|302348600|ref|YP_003816238.1| - 0.0035 16.8 0.2 0.0047 16.3 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_15 PF13175.1 gi|302348600|ref|YP_003816238.1| - 0.0088 15.1 0.0 1.2 8.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|302348600|ref|YP_003816238.1| - 0.022 13.9 0.4 0.091 11.9 0.1 1.9 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI Arf PF00025.16 gi|302348600|ref|YP_003816238.1| - 0.027 13.7 0.2 0.038 13.2 0.1 1.2 1 0 0 1 1 1 0 ADP-ribosylation factor family DUF2813 PF11398.3 gi|302348600|ref|YP_003816238.1| - 0.051 12.6 0.0 2.2 7.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) DUF853 PF05872.7 gi|302348600|ref|YP_003816238.1| - 0.061 11.6 1.2 4.4 5.5 0.4 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|302348600|ref|YP_003816238.1| - 0.074 12.5 0.2 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|302348600|ref|YP_003816238.1| - 0.09 12.1 0.1 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|302348600|ref|YP_003816238.1| - 0.091 11.9 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|302348600|ref|YP_003816238.1| - 0.1 12.8 0.7 0.83 9.8 0.5 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|302348600|ref|YP_003816238.1| - 0.12 11.9 0.1 0.24 10.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|302348600|ref|YP_003816238.1| - 0.12 12.3 0.1 0.2 11.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.1 gi|302348600|ref|YP_003816238.1| - 0.12 11.8 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|302348600|ref|YP_003816238.1| - 0.16 11.3 0.1 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase DUF3584 PF12128.3 gi|302348600|ref|YP_003816238.1| - 0.52 7.5 2.3 0.73 7.0 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.22 gi|302348601|ref|YP_003816239.1| - 8.7e-22 77.8 0.0 1.1e-21 77.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|302348601|ref|YP_003816239.1| - 1.2e-06 28.0 0.1 2.2e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|302348601|ref|YP_003816239.1| - 7.6e-05 22.8 0.0 0.022 14.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|302348601|ref|YP_003816239.1| - 0.00012 21.5 0.0 0.00022 20.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|302348601|ref|YP_003816239.1| - 0.00017 21.9 0.0 0.00032 21.0 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|302348601|ref|YP_003816239.1| - 0.0002 21.5 0.1 0.0015 18.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|302348601|ref|YP_003816239.1| - 0.00051 20.2 0.2 0.0078 16.4 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|302348601|ref|YP_003816239.1| - 0.0018 17.5 0.1 0.18 10.9 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|302348601|ref|YP_003816239.1| - 0.0024 17.0 0.0 0.0041 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|302348601|ref|YP_003816239.1| - 0.0029 17.0 0.1 0.78 9.1 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_14 PF13173.1 gi|302348601|ref|YP_003816239.1| - 0.0051 16.7 0.0 0.99 9.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|302348601|ref|YP_003816239.1| - 0.009 15.6 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|302348601|ref|YP_003816239.1| - 0.018 14.6 0.1 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|302348601|ref|YP_003816239.1| - 0.058 14.2 0.2 0.15 12.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|302348601|ref|YP_003816239.1| - 0.067 13.0 0.0 0.088 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|302348601|ref|YP_003816239.1| - 0.071 12.8 0.2 3.3 7.3 0.0 2.5 2 1 0 2 2 2 0 NTPase AAA_16 PF13191.1 gi|302348601|ref|YP_003816239.1| - 0.083 12.8 0.1 0.22 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain Asparaginase_2 PF01112.13 gi|302348602|ref|YP_003816240.1| - 1.9e-61 207.5 2.5 2.7e-61 207.0 1.8 1.1 1 0 0 1 1 1 1 Asparaginase SBP_bac_5 PF00496.17 gi|302348603|ref|YP_003816241.1| - 4.1e-47 160.8 3.2 9e-47 159.6 2.2 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MHC_I PF00129.13 gi|302348603|ref|YP_003816241.1| - 0.046 13.0 0.2 0.088 12.1 0.1 1.4 1 0 0 1 1 1 0 Class I Histocompatibility antigen, domains alpha 1 and 2 Terminase_4 PF05119.7 gi|302348603|ref|YP_003816241.1| - 0.11 12.6 0.2 0.32 11.1 0.2 1.8 1 0 0 1 1 1 0 Phage terminase, small subunit Shisa PF13908.1 gi|302348603|ref|YP_003816241.1| - 0.18 11.9 4.5 0.35 11.0 3.1 1.4 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator SpoIIIAH PF12685.2 gi|302348603|ref|YP_003816241.1| - 0.22 11.0 0.2 0.4 10.1 0.2 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein BPD_transp_1 PF00528.17 gi|302348604|ref|YP_003816242.1| - 9.8e-34 116.4 11.0 9.8e-34 116.4 7.7 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component AgrB PF04647.10 gi|302348604|ref|YP_003816242.1| - 0.11 11.5 0.1 0.11 11.5 0.1 2.1 3 0 0 3 3 3 0 Accessory gene regulator B BPD_transp_1 PF00528.17 gi|302348605|ref|YP_003816243.1| - 1.6e-25 89.6 18.6 1.6e-25 89.6 12.9 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|302348605|ref|YP_003816243.1| - 0.00054 19.2 1.0 0.00054 19.2 0.7 3.4 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C SpoVAB PF13782.1 gi|302348605|ref|YP_003816243.1| - 0.071 13.1 5.5 0.059 13.3 1.4 2.4 2 0 0 2 2 2 0 Stage V sporulation protein AB DUF2556 PF10831.3 gi|302348605|ref|YP_003816243.1| - 0.38 10.4 1.9 1.9 8.2 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2556) ABC_tran PF00005.22 gi|302348606|ref|YP_003816244.1| - 5.4e-24 85.0 0.0 9.9e-23 80.9 0.0 2.4 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|302348606|ref|YP_003816244.1| - 1.4e-23 82.9 0.4 2.5e-23 82.1 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|302348606|ref|YP_003816244.1| - 5.5e-11 42.9 0.0 2.1e-09 37.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|302348606|ref|YP_003816244.1| - 1.1e-05 24.7 0.6 5.5e-05 22.4 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|302348606|ref|YP_003816244.1| - 0.0041 17.4 0.1 0.067 13.4 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|302348606|ref|YP_003816244.1| - 0.0051 16.2 0.0 0.028 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain PRK PF00485.13 gi|302348606|ref|YP_003816244.1| - 0.0065 16.0 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family SbcCD_C PF13558.1 gi|302348606|ref|YP_003816244.1| - 0.055 13.3 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|302348606|ref|YP_003816244.1| - 0.081 11.9 0.4 0.46 9.4 0.2 2.2 2 1 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|302348606|ref|YP_003816244.1| - 0.18 11.3 0.0 0.36 10.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|302348607|ref|YP_003816245.1| - 7.7e-33 113.6 0.0 1.8e-32 112.4 0.0 1.7 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|302348607|ref|YP_003816245.1| - 1.8e-19 69.8 0.0 3.5e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|302348607|ref|YP_003816245.1| - 1.6e-12 48.0 0.9 1.8e-10 41.2 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|302348607|ref|YP_003816245.1| - 7.1e-07 29.4 0.1 0.0004 20.5 0.1 3.0 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|302348607|ref|YP_003816245.1| - 5.6e-06 25.7 0.2 0.00027 20.2 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|302348607|ref|YP_003816245.1| - 4.6e-05 22.1 0.0 0.018 13.5 0.0 3.3 4 0 0 4 4 4 1 AAA domain AAA_25 PF13481.1 gi|302348607|ref|YP_003816245.1| - 5.5e-05 22.6 0.1 0.11 11.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|302348607|ref|YP_003816245.1| - 0.00013 21.5 0.8 0.21 10.9 0.0 2.6 2 1 1 3 3 3 2 AAA-like domain AAA_18 PF13238.1 gi|302348607|ref|YP_003816245.1| - 0.00075 19.8 0.2 0.0032 17.7 0.0 2.1 3 0 0 3 3 2 1 AAA domain AAA_15 PF13175.1 gi|302348607|ref|YP_003816245.1| - 0.001 18.2 0.0 0.051 12.6 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|302348607|ref|YP_003816245.1| - 0.0013 18.2 0.0 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|302348607|ref|YP_003816245.1| - 0.0017 18.4 0.4 0.0041 17.1 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain G-alpha PF00503.15 gi|302348607|ref|YP_003816245.1| - 0.01 14.5 0.0 0.011 14.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit DEAD PF00270.24 gi|302348607|ref|YP_003816245.1| - 0.012 15.1 0.0 0.29 10.6 0.0 2.8 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_5 PF07728.9 gi|302348607|ref|YP_003816245.1| - 0.012 15.3 0.1 0.39 10.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|302348607|ref|YP_003816245.1| - 0.016 16.0 0.5 0.071 13.9 0.2 2.3 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|302348607|ref|YP_003816245.1| - 0.019 14.8 0.0 0.084 12.8 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|302348607|ref|YP_003816245.1| - 0.026 14.2 0.0 0.062 13.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|302348607|ref|YP_003816245.1| - 0.027 13.6 0.0 0.054 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF87 PF01935.12 gi|302348607|ref|YP_003816245.1| - 0.085 12.6 0.1 0.44 10.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 UPF0079 PF02367.12 gi|302348607|ref|YP_003816245.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Adeno_IVa2 PF02456.10 gi|302348607|ref|YP_003816245.1| - 0.17 10.4 0.0 0.29 9.7 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein NAD_kinase PF01513.16 gi|302348608|ref|YP_003816246.1| - 4.9e-50 169.9 0.0 5.5e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|302348608|ref|YP_003816246.1| - 0.00038 19.8 0.6 0.001 18.5 0.1 1.9 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.17 gi|302348608|ref|YP_003816246.1| - 0.047 13.3 0.0 0.12 12.0 0.0 1.8 1 0 0 1 1 1 0 DeoR C terminal sensor domain TetR_N PF00440.18 gi|302348608|ref|YP_003816246.1| - 0.12 12.0 0.1 0.59 9.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family NTP_transf_2 PF01909.18 gi|302348610|ref|YP_003816248.1| - 3e-08 33.8 0.1 6.8e-08 32.7 0.0 1.7 2 0 0 2 2 2 1 Nucleotidyltransferase domain DMRL_synthase PF00885.14 gi|302348611|ref|YP_003816249.1| - 8.2e-36 122.8 0.3 9.3e-36 122.6 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF885 PF05960.6 gi|302348611|ref|YP_003816249.1| - 0.0022 17.2 0.0 0.0027 16.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) GGDN PF05165.7 gi|302348612|ref|YP_003816250.1| - 7.2e-43 146.4 0.0 1.1e-42 145.7 0.0 1.2 1 0 0 1 1 1 1 GGDN family DUF2299 PF10061.4 gi|302348614|ref|YP_003816252.1| - 1.2e-21 76.5 0.1 1.4e-21 76.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) IF-2B PF01008.12 gi|302348615|ref|YP_003816253.1| - 6.4e-80 268.1 0.0 7.5e-80 267.9 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Iso_dh PF00180.15 gi|302348616|ref|YP_003816254.1| - 4.6e-93 311.9 0.0 5.5e-93 311.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase MannoseP_isomer PF01050.13 gi|302348616|ref|YP_003816254.1| - 0.11 12.0 0.1 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Tox-SGS PF15651.1 gi|302348616|ref|YP_003816254.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Salivary glad secreted protein domain toxin HAD PF12710.2 gi|302348617|ref|YP_003816255.1| - 4.1e-12 46.6 0.0 5.9e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|302348617|ref|YP_003816255.1| - 6.3e-11 43.1 0.0 8.1e-09 36.2 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|302348617|ref|YP_003816255.1| - 3.4e-08 33.3 0.0 5.4e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|302348617|ref|YP_003816255.1| - 2e-06 28.1 0.0 7.2e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|302348617|ref|YP_003816255.1| - 0.17 11.1 0.0 0.24 10.6 0.0 1.3 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase DUF123 PF01986.11 gi|302348618|ref|YP_003816256.1| - 1.4e-12 47.5 0.0 1.9e-12 47.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Thioredoxin PF00085.15 gi|302348619|ref|YP_003816257.1| - 0.031 13.9 0.4 0.079 12.6 0.3 1.7 1 1 0 1 1 1 0 Thioredoxin DUF981 PF06168.6 gi|302348620|ref|YP_003816258.1| - 4.1e-46 157.1 20.4 4.7e-46 157.0 14.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) DUF4131 PF13567.1 gi|302348620|ref|YP_003816258.1| - 5.3 6.4 19.1 0.053 12.9 2.2 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) CbiA PF01656.18 gi|302348621|ref|YP_003816259.1| - 0.00032 20.1 0.2 0.0021 17.5 0.2 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|302348621|ref|YP_003816259.1| - 0.055 13.1 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_26 PF13500.1 gi|302348621|ref|YP_003816259.1| - 0.1 12.2 1.7 0.25 10.9 1.2 1.6 1 1 0 1 1 1 0 AAA domain RTC PF01137.16 gi|302348622|ref|YP_003816260.1| - 8.2e-78 260.3 0.1 9.3e-78 260.1 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|302348622|ref|YP_003816260.1| - 2.9e-27 94.7 0.1 5.2e-27 93.8 0.0 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Glyco_hydro_57 PF03065.10 gi|302348624|ref|YP_003816262.1| - 1.5e-45 155.7 0.5 4.2e-45 154.2 0.4 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 CARDB PF07705.6 gi|302348624|ref|YP_003816262.1| - 0.00079 19.4 1.1 0.0031 17.5 0.7 2.0 1 0 0 1 1 1 1 CARDB SAM_adeno_trans PF01887.11 gi|302348625|ref|YP_003816263.1| - 2e-75 253.1 0.0 2.3e-75 253.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DAO PF01266.19 gi|302348626|ref|YP_003816264.1| - 3.5e-37 128.1 0.6 4.1e-37 127.9 0.4 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|302348626|ref|YP_003816264.1| - 1.3e-06 28.3 0.3 3e-06 27.1 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|302348626|ref|YP_003816264.1| - 0.0032 16.3 0.2 0.0047 15.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|302348626|ref|YP_003816264.1| - 0.016 14.9 0.1 0.03 14.1 0.1 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|302348626|ref|YP_003816264.1| - 0.02 14.7 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|302348626|ref|YP_003816264.1| - 0.027 14.8 2.0 0.027 14.8 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|302348626|ref|YP_003816264.1| - 0.069 12.1 0.5 0.11 11.5 0.3 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.1 gi|302348626|ref|YP_003816264.1| - 0.08 13.0 0.2 0.16 11.9 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|302348626|ref|YP_003816264.1| - 0.096 11.1 0.0 0.13 10.6 0.0 1.1 1 0 0 1 1 1 0 HI0933-like protein 3HCDH_N PF02737.13 gi|302348626|ref|YP_003816264.1| - 0.13 11.8 0.1 0.19 11.3 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aminotran_1_2 PF00155.16 gi|302348627|ref|YP_003816265.1| - 1.5e-68 231.4 0.0 1.7e-68 231.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|302348627|ref|YP_003816265.1| - 2.4e-10 39.6 0.0 7e-10 38.1 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|302348627|ref|YP_003816265.1| - 3.4e-09 36.2 0.0 8e-09 35.0 0.0 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|302348627|ref|YP_003816265.1| - 2.1e-05 22.9 0.0 3.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|302348627|ref|YP_003816265.1| - 8e-05 21.9 0.0 0.00012 21.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Tsp45I PF06300.7 gi|302348628|ref|YP_003816266.1| - 0.063 12.7 0.0 0.09 12.1 0.0 1.1 1 0 0 1 1 1 0 Tsp45I type II restriction enzyme CutA1 PF03091.10 gi|302348629|ref|YP_003816267.1| - 5.6e-36 122.2 0.0 6.4e-36 122.1 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein T6SS-SciN PF12790.2 gi|302348630|ref|YP_003816268.1| - 0.022 14.3 0.0 0.042 13.4 0.0 1.6 1 1 1 2 2 2 0 Type VI secretion lipoprotein TF_Zn_Ribbon PF08271.7 gi|302348630|ref|YP_003816268.1| - 0.024 13.9 0.2 0.14 11.5 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding GAGA PF09237.6 gi|302348630|ref|YP_003816268.1| - 0.033 13.7 0.0 0.064 12.8 0.0 1.5 1 0 0 1 1 1 0 GAGA factor Chisel PF15355.1 gi|302348630|ref|YP_003816268.1| - 0.11 12.4 0.2 0.33 10.9 0.2 1.7 1 1 0 1 1 1 0 Stretch-responsive small skeletal muscle X protein, Chisel DUF1610 PF07754.6 gi|302348630|ref|YP_003816268.1| - 0.23 11.6 4.8 0.72 10.0 0.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DNA_ligase_ZBD PF03119.11 gi|302348630|ref|YP_003816268.1| - 0.24 11.1 5.5 3.1 7.5 0.5 2.9 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Enolase_C PF00113.17 gi|302348631|ref|YP_003816269.1| - 8.9e-108 359.7 0.0 1.2e-107 359.3 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|302348631|ref|YP_003816269.1| - 8.1e-44 148.7 0.6 1.6e-43 147.8 0.4 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|302348631|ref|YP_003816269.1| - 0.022 15.2 0.0 0.06 13.8 0.0 1.8 1 0 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|302348631|ref|YP_003816269.1| - 0.03 14.2 0.0 0.17 11.8 0.0 2.1 2 0 0 2 2 2 0 Enolase C-terminal domain-like AdoHcyase PF05221.12 gi|302348632|ref|YP_003816270.1| - 4.2e-67 225.9 0.0 5.1e-67 225.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|302348632|ref|YP_003816270.1| - 3.3e-59 199.3 0.1 8.9e-59 197.9 0.1 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|302348632|ref|YP_003816270.1| - 1.1e-09 37.6 0.1 2.5e-09 36.5 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|302348632|ref|YP_003816270.1| - 2.5e-08 33.4 0.1 4.9e-08 32.5 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|302348632|ref|YP_003816270.1| - 0.035 13.6 0.2 0.062 12.8 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|302348632|ref|YP_003816270.1| - 0.082 12.9 0.4 0.27 11.2 0.1 2.1 2 0 0 2 2 2 0 TrkA-N domain FlhE PF06366.8 gi|302348632|ref|YP_003816270.1| - 0.082 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Flagellar protein FlhE Peptidase_M50 PF02163.17 gi|302348633|ref|YP_003816271.1| - 1e-14 53.9 3.5 1e-14 53.9 2.4 2.0 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|302348633|ref|YP_003816271.1| - 4.7e-08 32.8 0.0 9.7e-08 31.8 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|302348633|ref|YP_003816271.1| - 5.5e-06 26.4 0.0 1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) GRASP55_65 PF04495.9 gi|302348633|ref|YP_003816271.1| - 0.048 13.6 0.0 0.083 12.8 0.0 1.4 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain Metallophos_2 PF12850.2 gi|302348634|ref|YP_003816272.1| - 2.5e-25 89.1 0.0 2.9e-25 88.9 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|302348634|ref|YP_003816272.1| - 6.3e-05 22.4 0.3 0.014 14.7 0.2 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Prok-JAB PF14464.1 gi|302348635|ref|YP_003816273.1| - 2e-10 40.1 0.0 2.5e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|302348635|ref|YP_003816273.1| - 0.028 14.1 0.0 0.04 13.6 0.0 1.5 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|302348635|ref|YP_003816273.1| - 0.14 11.8 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 RadC-like JAB domain SBP_bac_11 PF13531.1 gi|302348636|ref|YP_003816274.1| - 7.7e-10 38.7 0.0 9.8e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein zf-CDGSH PF09360.5 gi|302348637|ref|YP_003816275.1| - 4.3e-13 48.8 0.9 6.7e-13 48.2 0.6 1.3 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type adh_short_C2 PF13561.1 gi|302348639|ref|YP_003816277.1| - 7.9e-31 107.6 0.0 9.5e-31 107.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|302348639|ref|YP_003816277.1| - 3.8e-15 56.2 0.2 1.1e-14 54.6 0.1 1.7 1 1 1 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|302348639|ref|YP_003816277.1| - 5.6e-06 26.1 0.1 2.4e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 KR domain DUF1776 PF08643.5 gi|302348639|ref|YP_003816277.1| - 0.017 14.2 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) 3HCDH_N PF02737.13 gi|302348639|ref|YP_003816277.1| - 0.068 12.8 0.1 0.25 10.9 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RskA PF10099.4 gi|302348641|ref|YP_003816279.1| - 1.6 8.4 6.4 11 5.7 4.5 2.1 1 1 0 1 1 1 0 Anti-sigma-K factor rskA Carb_kinase PF01256.12 gi|302348642|ref|YP_003816280.1| - 2.5e-45 154.6 0.4 3.8e-45 154.0 0.2 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|302348642|ref|YP_003816280.1| - 8.6e-44 149.1 0.4 1.7e-43 148.1 0.1 1.6 2 0 0 2 2 2 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.7 gi|302348642|ref|YP_003816280.1| - 0.00015 21.0 0.0 0.00034 19.8 0.0 1.6 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase MFS_1 PF07690.11 gi|302348644|ref|YP_003816282.1| - 5e-22 78.0 33.4 5e-22 78.0 23.1 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|302348644|ref|YP_003816282.1| - 0.2 10.1 11.6 0.0039 15.7 2.9 1.9 2 1 1 3 3 3 0 LacY proton/sugar symporter DUF766 PF05571.7 gi|302348644|ref|YP_003816282.1| - 2 7.6 6.3 0.42 9.8 1.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF766) MFS_1 PF07690.11 gi|302348645|ref|YP_003816283.1| - 1.4e-24 86.4 53.3 1.7e-18 66.4 21.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|302348645|ref|YP_003816283.1| - 4.7e-05 22.1 22.2 0.0015 17.1 3.9 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter Isochorismatase PF00857.15 gi|302348646|ref|YP_003816284.1| - 4.7e-49 166.6 0.0 5.3e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family AAA_25 PF13481.1 gi|302348646|ref|YP_003816284.1| - 0.055 12.8 0.0 0.093 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain PAP2 PF01569.16 gi|302348648|ref|YP_003816286.1| - 0.00047 19.8 13.1 0.0015 18.2 9.1 2.2 1 1 0 1 1 1 1 PAP2 superfamily UbiA PF01040.13 gi|302348649|ref|YP_003816287.1| - 1.2e-26 93.4 24.9 1.7e-26 93.0 17.3 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4199 PF13858.1 gi|302348650|ref|YP_003816288.1| - 1.4 8.8 12.7 0.083 12.8 2.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) DUF2636 PF11120.3 gi|302348650|ref|YP_003816288.1| - 7.5 6.1 8.0 3.5 7.1 0.7 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2636) 2-oxoacid_dh PF00198.18 gi|302348651|ref|YP_003816289.1| - 1.1e-22 80.5 0.0 1.5e-22 79.9 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FAM194 PF14977.1 gi|302348651|ref|YP_003816289.1| - 0.01 14.8 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 0 FAM194 protein Cache_1 PF02743.13 gi|302348651|ref|YP_003816289.1| - 0.1 12.1 0.2 0.48 10.0 0.0 2.0 1 1 1 2 2 2 0 Cache domain DUF2258 PF10015.4 gi|302348652|ref|YP_003816290.1| - 3.1e-23 81.3 0.3 6.2e-23 80.3 0.2 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) Peripla_BP_6 PF13458.1 gi|302348653|ref|YP_003816291.1| - 9.3e-28 97.5 3.7 1.3e-27 97.0 2.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|302348653|ref|YP_003816291.1| - 5.6e-08 31.9 1.0 6.9e-06 25.0 0.3 2.0 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|302348653|ref|YP_003816291.1| - 0.0018 17.1 0.7 0.0027 16.5 0.5 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region KaiC PF06745.8 gi|302348654|ref|YP_003816292.1| - 6.1e-51 172.7 0.0 9e-51 172.1 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|302348654|ref|YP_003816292.1| - 6.4e-08 32.2 0.0 1.7e-07 30.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|302348654|ref|YP_003816292.1| - 1.5e-05 23.4 0.0 0.005 15.2 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_16 PF13191.1 gi|302348654|ref|YP_003816292.1| - 0.00029 20.8 0.0 0.00049 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|302348654|ref|YP_003816292.1| - 0.00066 19.5 0.0 0.0015 18.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|302348654|ref|YP_003816292.1| - 0.0015 19.3 0.1 0.0058 17.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|302348654|ref|YP_003816292.1| - 0.0023 18.2 0.0 0.0072 16.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|302348654|ref|YP_003816292.1| - 0.0031 17.2 0.0 0.0066 16.1 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|302348654|ref|YP_003816292.1| - 0.0046 15.9 0.0 0.006 15.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.7 gi|302348654|ref|YP_003816292.1| - 0.0046 16.0 0.1 0.0083 15.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|302348654|ref|YP_003816292.1| - 0.0072 16.4 0.0 0.018 15.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|302348654|ref|YP_003816292.1| - 0.0074 15.8 0.5 0.21 11.1 0.1 2.1 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|302348654|ref|YP_003816292.1| - 0.0076 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.12 gi|302348654|ref|YP_003816292.1| - 0.014 14.7 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DnaB_C PF03796.10 gi|302348654|ref|YP_003816292.1| - 0.027 13.3 0.0 0.043 12.7 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_33 PF13671.1 gi|302348654|ref|YP_003816292.1| - 0.054 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|302348654|ref|YP_003816292.1| - 0.055 12.5 0.1 2.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus UPF0079 PF02367.12 gi|302348654|ref|YP_003816292.1| - 0.065 12.8 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|302348654|ref|YP_003816292.1| - 0.08 13.1 0.1 0.16 12.1 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|302348654|ref|YP_003816292.1| - 0.085 13.1 0.3 0.2 11.9 0.1 1.7 2 0 0 2 2 1 0 ABC transporter UDP-g_GGTase PF06427.6 gi|302348654|ref|YP_003816292.1| - 0.12 11.6 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose:Glycoprotein Glucosyltransferase Arch_ATPase PF01637.13 gi|302348654|ref|YP_003816292.1| - 0.15 11.7 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase ArgK PF03308.11 gi|302348654|ref|YP_003816292.1| - 0.17 10.6 0.0 0.32 9.7 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Na_Ca_ex PF01699.19 gi|302348655|ref|YP_003816293.1| - 1.6e-16 60.1 17.6 3e-09 36.5 3.3 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein SBP_bac_1 PF01547.20 gi|302348656|ref|YP_003816294.1| - 0.003 17.3 0.0 0.0037 17.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein OppC_N PF12911.2 gi|302348656|ref|YP_003816294.1| - 0.041 13.2 0.9 0.057 12.7 0.6 1.3 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C UPF0118 PF01594.11 gi|302348656|ref|YP_003816294.1| - 0.047 12.6 0.2 0.053 12.5 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF20 SP_C-Propep PF08999.5 gi|302348656|ref|YP_003816294.1| - 0.079 12.4 0.2 0.086 12.3 0.2 1.2 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide FixH PF05751.6 gi|302348656|ref|YP_003816294.1| - 1 9.1 3.4 1.4 8.7 2.3 1.2 1 0 0 1 1 1 0 FixH IMPDH PF00478.20 gi|302348657|ref|YP_003816295.1| - 4.8e-98 328.2 0.2 6e-98 327.9 0.1 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|302348657|ref|YP_003816295.1| - 6.7e-08 32.0 7.5 0.0019 17.4 5.3 2.4 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|302348657|ref|YP_003816295.1| - 4.7e-07 28.9 4.2 1.1e-06 27.8 2.9 1.6 1 0 0 1 1 1 1 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|302348657|ref|YP_003816295.1| - 6.9e-06 25.2 1.1 1.4e-05 24.2 0.8 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|302348657|ref|YP_003816295.1| - 5.3e-05 22.2 3.9 8.2e-05 21.6 2.7 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.9 gi|302348657|ref|YP_003816295.1| - 0.0034 16.5 0.5 0.008 15.2 0.3 1.6 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|302348657|ref|YP_003816295.1| - 0.014 14.6 0.0 0.03 13.5 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein GATase PF00117.23 gi|302348658|ref|YP_003816296.1| - 4.4e-37 127.4 0.0 7.1e-37 126.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.17 gi|302348658|ref|YP_003816296.1| - 2.6e-33 113.6 0.0 5.3e-33 112.6 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|302348658|ref|YP_003816296.1| - 1e-11 44.1 0.1 8.6e-07 28.1 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.8 gi|302348658|ref|YP_003816296.1| - 1.1e-09 38.0 0.0 3.1e-09 36.5 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 QueC PF06508.8 gi|302348658|ref|YP_003816296.1| - 7.3e-05 22.1 0.0 0.003 16.8 0.0 2.5 3 0 0 3 3 3 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|302348658|ref|YP_003816296.1| - 9.5e-05 22.0 0.2 0.00019 21.0 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|302348658|ref|YP_003816296.1| - 0.0018 17.8 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|302348658|ref|YP_003816296.1| - 0.021 13.4 0.1 0.08 11.4 0.1 1.8 2 0 0 2 2 2 0 tRNA methyl transferase FR47 PF08445.5 gi|302348658|ref|YP_003816296.1| - 0.026 14.2 0.6 1 9.1 0.0 3.6 3 2 2 5 5 5 0 FR47-like protein Adenine_deam_C PF13382.1 gi|302348659|ref|YP_003816297.1| - 7.7e-40 135.8 0.0 1.1e-39 135.2 0.0 1.2 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|302348659|ref|YP_003816297.1| - 4.5e-19 69.2 0.0 1.1e-10 41.7 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|302348659|ref|YP_003816297.1| - 2.7e-10 39.9 0.0 7.1e-10 38.5 0.0 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|302348659|ref|YP_003816297.1| - 1.4e-08 35.1 4.7 2.5e-06 27.7 3.3 2.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|302348659|ref|YP_003816297.1| - 3.2e-07 29.9 0.3 0.046 12.9 0.0 3.2 3 0 0 3 3 3 2 Amidohydrolase family NosD PF05048.8 gi|302348660|ref|YP_003816298.1| - 1e-13 50.9 1.9 1e-13 50.9 1.3 2.0 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Mucin PF01456.12 gi|302348660|ref|YP_003816298.1| - 0.041 13.6 34.5 0.067 12.9 23.9 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein Rifin_STEVOR PF02009.11 gi|302348660|ref|YP_003816298.1| - 0.057 13.0 3.4 0.077 12.6 2.4 1.1 1 0 0 1 1 1 0 Rifin/stevor family Beta_helix PF13229.1 gi|302348660|ref|YP_003816298.1| - 0.063 13.0 0.3 0.063 13.0 0.2 2.1 2 0 0 2 2 2 0 Right handed beta helix region AJAP1_PANP_C PF15298.1 gi|302348660|ref|YP_003816298.1| - 1.3 8.8 21.9 1.7 8.4 15.2 1.2 1 0 0 1 1 1 0 AJAP1/PANP C-terminus ABC2_membrane_3 PF12698.2 gi|302348660|ref|YP_003816298.1| - 2.2 7.2 10.1 2.5 7.0 7.0 1.2 1 1 0 1 1 1 0 ABC-2 family transporter protein Ub-Mut7C PF14451.1 gi|302348661|ref|YP_003816299.1| - 0.17 11.3 1.8 2.2 7.8 0.1 3.2 3 1 1 4 4 4 0 Mut7-C ubiquitin NicO PF03824.11 gi|302348662|ref|YP_003816300.1| - 5.9e-05 22.5 1.9 5.9e-05 22.5 1.3 2.3 2 1 0 2 2 2 1 High-affinity nickel-transport protein LysE PF01810.13 gi|302348662|ref|YP_003816300.1| - 0.044 13.0 6.2 0.13 11.4 4.3 2.0 1 1 0 1 1 1 0 LysE type translocator FeoB_C PF07664.7 gi|302348662|ref|YP_003816300.1| - 0.33 10.3 0.1 0.33 10.3 0.1 3.0 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus Cys_Met_Meta_PP PF01053.15 gi|302348663|ref|YP_003816301.1| - 1.2e-109 366.1 0.0 1.4e-109 365.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|302348663|ref|YP_003816301.1| - 0.011 14.8 0.0 0.042 12.9 0.0 1.9 3 0 0 3 3 3 0 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|302348663|ref|YP_003816301.1| - 0.033 13.1 0.0 0.058 12.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|302348663|ref|YP_003816301.1| - 0.12 11.0 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V DUF630 PF04783.7 gi|302348664|ref|YP_003816302.1| - 0.05 13.5 0.1 0.092 12.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF630) zinc_ribbon_5 PF13719.1 gi|302348665|ref|YP_003816303.1| - 4e-05 23.1 0.1 0.12 11.9 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|302348665|ref|YP_003816303.1| - 8.6e-05 22.1 0.2 0.22 11.2 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-ZPR1 PF03367.8 gi|302348665|ref|YP_003816303.1| - 0.0027 16.8 0.0 0.0053 15.9 0.0 1.4 2 0 0 2 2 2 1 ZPR1 zinc-finger domain zf-ISL3 PF14690.1 gi|302348665|ref|YP_003816303.1| - 0.0094 15.9 1.0 1.1 9.3 0.0 2.3 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|302348665|ref|YP_003816303.1| - 0.029 13.5 2.0 2.4 7.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|302348665|ref|YP_003816303.1| - 0.051 13.5 0.4 12 5.9 0.0 2.5 3 0 0 3 3 2 0 Zinc ribbon domain CpXC PF14353.1 gi|302348665|ref|YP_003816303.1| - 0.054 13.4 0.2 6 6.8 0.0 2.4 2 0 0 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.2 gi|302348665|ref|YP_003816303.1| - 0.055 13.2 2.3 3.2 7.6 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|302348665|ref|YP_003816303.1| - 0.086 12.1 0.2 11 5.4 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|302348665|ref|YP_003816303.1| - 0.1 12.2 0.7 0.62 9.7 0.5 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|302348665|ref|YP_003816303.1| - 0.22 11.0 2.3 0.7 9.4 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-Mss51 PF13824.1 gi|302348665|ref|YP_003816303.1| - 0.3 10.9 1.2 20 5.1 0.0 2.5 3 0 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_4 PF13894.1 gi|302348665|ref|YP_003816303.1| - 0.34 11.3 4.6 1.5 9.2 0.3 2.6 3 0 0 3 3 3 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|302348665|ref|YP_003816303.1| - 0.39 10.2 4.3 8.5 6.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2752 PF10825.3 gi|302348665|ref|YP_003816303.1| - 0.44 10.6 5.1 4.5 7.3 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) zf-C2H2 PF00096.21 gi|302348665|ref|YP_003816303.1| - 0.87 10.0 3.1 13 6.3 0.1 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF998 PF06197.8 gi|302348666|ref|YP_003816304.1| - 9.6e-29 99.9 21.3 1.1e-28 99.8 14.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Frag1 PF10277.4 gi|302348666|ref|YP_003816304.1| - 0.00032 20.2 0.8 0.00052 19.5 0.5 1.3 1 0 0 1 1 1 1 Frag1/DRAM/Sfk1 family DUF4401 PF14351.1 gi|302348666|ref|YP_003816304.1| - 0.0035 16.4 8.4 0.0035 16.4 5.8 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4401) Gram_pos_anchor PF00746.16 gi|302348666|ref|YP_003816304.1| - 0.13 12.1 0.7 0.13 12.1 0.5 3.7 5 0 0 5 5 5 0 Gram positive anchor IncA PF04156.9 gi|302348666|ref|YP_003816304.1| - 9.8 5.7 8.7 11 5.5 0.7 2.5 2 0 0 2 2 2 0 IncA protein MFS_1 PF07690.11 gi|302348667|ref|YP_003816305.1| - 2.2e-19 69.3 98.0 7.9e-18 64.2 42.7 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily ABC_tran PF00005.22 gi|302348668|ref|YP_003816306.1| - 3.9e-30 104.9 0.0 7.8e-30 103.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302348668|ref|YP_003816306.1| - 2.4e-15 57.2 0.0 4.3e-11 43.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|302348668|ref|YP_003816306.1| - 4.3e-06 27.1 0.1 8.5e-06 26.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|302348668|ref|YP_003816306.1| - 0.00045 19.3 0.0 0.24 10.4 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain KdpD PF02702.12 gi|302348668|ref|YP_003816306.1| - 0.00076 18.6 0.1 0.0017 17.5 0.0 1.6 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain SRP54 PF00448.17 gi|302348668|ref|YP_003816306.1| - 0.0022 17.4 0.1 0.014 14.8 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|302348668|ref|YP_003816306.1| - 0.0026 17.2 0.0 0.005 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Toprim_4 PF13662.1 gi|302348668|ref|YP_003816306.1| - 0.0064 16.4 0.1 0.38 10.7 0.1 2.6 2 0 0 2 2 2 1 Toprim domain AAA PF00004.24 gi|302348668|ref|YP_003816306.1| - 0.012 15.8 1.8 0.22 11.7 0.5 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|302348668|ref|YP_003816306.1| - 0.013 15.4 0.0 6.4 6.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|302348668|ref|YP_003816306.1| - 0.018 14.4 0.1 2.8 7.3 0.0 2.9 3 0 0 3 3 3 0 AAA domain SMC_N PF02463.14 gi|302348668|ref|YP_003816306.1| - 0.022 13.9 0.0 4.5 6.4 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain KaiC PF06745.8 gi|302348668|ref|YP_003816306.1| - 0.025 13.7 0.2 0.46 9.5 0.0 2.3 2 0 0 2 2 2 0 KaiC AAA_23 PF13476.1 gi|302348668|ref|YP_003816306.1| - 0.037 14.3 0.0 0.082 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|302348668|ref|YP_003816306.1| - 0.056 13.3 0.0 0.38 10.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|302348668|ref|YP_003816306.1| - 0.073 12.6 0.3 1 8.8 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|302348668|ref|YP_003816306.1| - 0.093 12.8 0.0 1 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain Hydrolase PF00702.21 gi|302348668|ref|YP_003816306.1| - 0.11 12.9 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_17 PF13207.1 gi|302348668|ref|YP_003816306.1| - 0.11 13.3 0.5 0.48 11.2 0.3 2.3 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|302348668|ref|YP_003816306.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|302348668|ref|YP_003816306.1| - 0.14 11.5 0.2 15 4.8 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain BCA_ABC_TP_C PF12399.3 gi|302348668|ref|YP_003816306.1| - 0.29 10.8 1.2 1 9.1 0.1 2.2 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter ABC2_membrane PF01061.19 gi|302348669|ref|YP_003816307.1| - 2.4e-31 108.5 19.4 2.4e-31 108.5 13.5 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|302348669|ref|YP_003816307.1| - 4.2e-22 78.6 22.0 4.2e-22 78.6 15.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|302348669|ref|YP_003816307.1| - 1.2e-07 31.1 21.8 1.6e-07 30.7 15.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|302348669|ref|YP_003816307.1| - 2.7e-07 29.7 17.5 3.3e-07 29.4 12.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein Citrate_synt PF00285.16 gi|302348670|ref|YP_003816308.1| - 2.4e-115 385.0 0.0 2.7e-115 384.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase Hjc PF01870.13 gi|302348671|ref|YP_003816309.1| - 3.2e-28 97.1 0.0 4.4e-28 96.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|302348671|ref|YP_003816309.1| - 2.2e-05 24.6 0.0 3.3e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Nuclease-related domain DUF1626 PF07788.6 gi|302348671|ref|YP_003816309.1| - 0.08 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1626) Lipoprotein_8 PF02030.10 gi|302348671|ref|YP_003816309.1| - 0.13 10.7 0.0 0.16 10.4 0.0 1.1 1 0 0 1 1 1 0 Hypothetical lipoprotein (MG045 family) MFS_1 PF07690.11 gi|302348672|ref|YP_003816310.1| - 1.1e-25 90.1 58.0 4.9e-18 64.9 14.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|302348672|ref|YP_003816310.1| - 1.6e-06 27.0 29.3 0.00026 19.6 4.9 2.8 2 1 0 2 2 2 2 Sugar (and other) transporter TRI12 PF06609.8 gi|302348672|ref|YP_003816310.1| - 1e-05 23.9 23.0 7.7e-05 21.0 3.1 2.0 1 1 1 2 2 2 2 Fungal trichothecene efflux pump (TRI12) MFS_1_like PF12832.2 gi|302348672|ref|YP_003816310.1| - 0.03 14.1 7.7 2.1 8.1 0.3 3.6 3 0 0 3 3 3 0 MFS_1 like family TPP_enzyme_C PF02775.16 gi|302348673|ref|YP_003816311.1| - 4.7e-30 104.1 0.1 6.6e-30 103.6 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|302348673|ref|YP_003816311.1| - 9.3e-09 35.0 0.1 2.1e-07 30.7 0.1 2.5 2 1 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|302348674|ref|YP_003816312.1| - 3.3e-48 164.1 0.2 5.1e-48 163.5 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|302348674|ref|YP_003816312.1| - 8.8e-33 113.6 0.2 2.2e-32 112.3 0.0 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|302348674|ref|YP_003816312.1| - 8.2e-08 32.2 0.0 5.8e-07 29.4 0.0 2.5 3 0 0 3 3 3 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|302348674|ref|YP_003816312.1| - 0.026 13.9 2.1 0.079 12.4 1.4 1.8 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AA_permease_2 PF13520.1 gi|302348676|ref|YP_003816314.1| - 1.8e-07 30.0 34.1 1.8e-07 30.0 23.6 2.1 2 0 0 2 2 2 1 Amino acid permease ROK PF00480.15 gi|302348677|ref|YP_003816315.1| - 1.2e-35 122.9 0.0 1.5e-35 122.6 0.0 1.1 1 0 0 1 1 1 1 ROK family MutL PF13941.1 gi|302348677|ref|YP_003816315.1| - 0.067 11.5 0.0 0.09 11.0 0.0 1.1 1 0 0 1 1 1 0 MutL protein Hexokinase_1 PF00349.16 gi|302348677|ref|YP_003816315.1| - 0.14 11.4 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Hexokinase Pribosyltran PF00156.22 gi|302348678|ref|YP_003816316.1| - 2e-18 66.3 0.0 2.7e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PK PF00224.16 gi|302348679|ref|YP_003816317.1| - 3.2e-85 285.7 0.1 4.7e-85 285.2 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|302348679|ref|YP_003816317.1| - 1.8e-12 46.8 0.0 3.6e-12 45.8 0.0 1.5 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|302348679|ref|YP_003816317.1| - 1.6e-05 23.8 0.1 3e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Amidohydro_2 PF04909.9 gi|302348679|ref|YP_003816317.1| - 0.046 13.2 0.1 0.48 9.9 0.0 2.6 3 2 1 4 4 4 0 Amidohydrolase DUF2204 PF09970.4 gi|302348680|ref|YP_003816318.1| - 1.3e-49 168.1 0.1 1.4e-49 168.0 0.1 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) DoxD PF04173.8 gi|302348681|ref|YP_003816319.1| - 2.6e-62 209.4 3.4 2.9e-62 209.2 2.4 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.7 gi|302348681|ref|YP_003816319.1| - 0.0072 16.7 14.1 0.008 16.5 7.9 2.3 2 1 0 2 2 2 1 DoxX DoxA PF07680.6 gi|302348682|ref|YP_003816320.1| - 8.4e-46 154.8 0.1 1e-45 154.6 0.1 1.1 1 0 0 1 1 1 1 TQO small subunit DoxA CytB6-F_Fe-S PF08802.5 gi|302348683|ref|YP_003816321.1| - 0.16 11.9 2.6 0.43 10.6 1.8 1.7 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit UDG PF03167.14 gi|302348684|ref|YP_003816322.1| - 1.2e-42 144.9 0.0 1.5e-42 144.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Lon_C PF05362.8 gi|302348685|ref|YP_003816323.1| - 0.003 16.9 1.7 0.0061 15.8 0.0 2.1 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain Polyhedrin PF00738.13 gi|302348686|ref|YP_003816324.1| - 0.0093 15.0 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 Polyhedrin Orbi_VP6 PF01516.11 gi|302348686|ref|YP_003816324.1| - 0.11 11.6 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Orbivirus helicase VP6 HTH_3 PF01381.17 gi|302348687|ref|YP_003816325.1| - 9.3e-09 35.0 0.2 1.1e-07 31.5 0.0 2.5 2 2 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|302348687|ref|YP_003816325.1| - 2.8e-06 27.4 0.2 2.5e-05 24.3 0.1 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|302348687|ref|YP_003816325.1| - 6.9e-05 22.8 0.0 0.00023 21.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|302348687|ref|YP_003816325.1| - 7.4e-05 22.2 0.1 0.12 11.9 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|302348687|ref|YP_003816325.1| - 0.00046 19.6 0.0 0.04 13.4 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_24 PF13412.1 gi|302348687|ref|YP_003816325.1| - 0.0031 16.8 0.2 0.083 12.2 0.0 2.5 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|302348687|ref|YP_003816325.1| - 0.0038 16.8 0.0 0.015 14.9 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TetR_N PF00440.18 gi|302348687|ref|YP_003816325.1| - 0.0078 15.8 0.1 0.073 12.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family Cro PF09048.5 gi|302348687|ref|YP_003816325.1| - 0.0086 15.6 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 1 Cro HTH_28 PF13518.1 gi|302348687|ref|YP_003816325.1| - 0.011 15.7 0.0 0.15 12.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|302348687|ref|YP_003816325.1| - 0.013 15.1 0.0 0.063 12.9 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain IF2_N PF04760.10 gi|302348687|ref|YP_003816325.1| - 0.013 15.0 0.0 0.12 12.0 0.0 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_11 PF08279.7 gi|302348687|ref|YP_003816325.1| - 0.014 15.0 0.0 0.068 12.8 0.0 2.1 3 0 0 3 3 3 0 HTH domain MarR_2 PF12802.2 gi|302348687|ref|YP_003816325.1| - 0.015 14.9 0.1 0.19 11.4 0.0 2.5 3 0 0 3 3 3 0 MarR family HTH_IclR PF09339.5 gi|302348687|ref|YP_003816325.1| - 0.02 14.4 0.2 5.3 6.7 0.0 2.5 2 1 0 2 2 2 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|302348687|ref|YP_003816325.1| - 0.024 14.1 0.5 1.5 8.3 0.0 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Rho_N PF07498.7 gi|302348687|ref|YP_003816325.1| - 0.031 14.0 0.5 1.7 8.4 0.0 2.6 3 0 0 3 3 3 0 Rho termination factor, N-terminal domain P22_Cro PF14549.1 gi|302348687|ref|YP_003816325.1| - 0.047 13.4 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_Tnp_1 PF01527.15 gi|302348687|ref|YP_003816325.1| - 0.092 12.7 0.1 0.18 11.7 0.0 1.7 2 1 0 2 2 1 0 Transposase Lactamase_B_3 PF13483.1 gi|302348689|ref|YP_003816327.1| - 6.2e-32 110.5 0.0 8.2e-32 110.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|302348689|ref|YP_003816327.1| - 1.1e-13 51.1 1.3 9.9e-12 44.8 0.9 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|302348689|ref|YP_003816327.1| - 0.43 10.1 8.9 5.4 6.6 0.1 2.4 2 1 0 2 2 2 0 Metallo-beta-lactamase superfamily PGK PF00162.14 gi|302348690|ref|YP_003816328.1| - 3.8e-98 328.5 0.0 4.3e-98 328.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Glyco_hydro_42M PF08532.5 gi|302348690|ref|YP_003816328.1| - 0.039 13.1 0.0 1 8.4 0.0 2.2 2 0 0 2 2 2 0 Beta-galactosidase trimerisation domain Gp_dh_N PF00044.19 gi|302348691|ref|YP_003816329.1| - 8.1e-20 71.3 0.1 3.4e-19 69.2 0.1 2.0 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|302348691|ref|YP_003816329.1| - 5.8e-16 58.3 0.3 7.8e-16 57.9 0.2 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|302348691|ref|YP_003816329.1| - 1.1e-11 44.7 0.1 3e-11 43.3 0.1 1.8 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|302348691|ref|YP_003816329.1| - 0.00047 20.6 0.1 0.0028 18.1 0.0 2.4 2 2 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|302348691|ref|YP_003816329.1| - 0.0013 19.0 0.1 0.0056 16.9 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|302348691|ref|YP_003816329.1| - 0.048 12.8 0.2 0.61 9.2 0.1 2.2 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF4352 PF11611.3 gi|302348692|ref|YP_003816330.1| - 0.0081 16.2 0.2 0.011 15.8 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) Glyco_hydro_61 PF03443.9 gi|302348692|ref|YP_003816330.1| - 0.015 15.1 0.5 0.018 14.8 0.3 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 61 Bac_chlorC PF02043.12 gi|302348692|ref|YP_003816330.1| - 0.024 14.4 0.7 0.042 13.6 0.5 1.4 1 0 0 1 1 1 0 Bacteriochlorophyll C binding protein DUF1034 PF06280.7 gi|302348692|ref|YP_003816330.1| - 0.059 13.7 0.6 0.15 12.4 0.3 1.6 1 1 0 1 1 1 0 Fn3-like domain (DUF1034) CBM_2 PF00553.14 gi|302348692|ref|YP_003816330.1| - 0.067 13.2 8.0 0.11 12.5 5.2 1.7 1 1 0 1 1 1 0 Cellulose binding domain DUF2393 PF09624.5 gi|302348692|ref|YP_003816330.1| - 1.6 8.2 4.1 2.6 7.5 2.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2393) DUF1628 PF07790.6 gi|302348692|ref|YP_003816330.1| - 1.9 9.2 9.3 1.5 9.6 5.0 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF1628) CitG PF01874.11 gi|302348693|ref|YP_003816331.1| - 3.2e-21 75.7 0.3 4.4e-21 75.3 0.2 1.1 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DSPc PF00782.15 gi|302348694|ref|YP_003816332.1| - 3.4e-12 46.1 0.0 4.3e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|302348694|ref|YP_003816332.1| - 2.1e-05 24.0 0.0 2.5e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.7 gi|302348694|ref|YP_003816332.1| - 0.00015 21.2 0.0 0.00021 20.7 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.1 gi|302348694|ref|YP_003816332.1| - 0.012 15.8 0.0 0.015 15.5 0.0 1.1 1 0 0 1 1 1 0 Tyrosine phosphatase family UDG PF03167.14 gi|302348695|ref|YP_003816333.1| - 2.4e-30 105.0 0.0 3.1e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Rifin_STEVOR PF02009.11 gi|302348696|ref|YP_003816334.1| - 0.79 9.3 4.3 1.1 8.8 3.0 1.1 1 0 0 1 1 1 0 Rifin/stevor family Glyco_hydro_77 PF02446.12 gi|302348697|ref|YP_003816335.1| - 9.6e-148 492.8 0.0 1.1e-147 492.6 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase DrsE_2 PF13686.1 gi|302348698|ref|YP_003816336.1| - 1.3e-08 34.7 0.0 1.7e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|302348698|ref|YP_003816336.1| - 0.00031 20.7 0.0 0.0023 17.9 0.0 1.9 1 1 0 1 1 1 1 DsrE/DsrF-like family Metallophos_2 PF12850.2 gi|302348699|ref|YP_003816337.1| - 5e-23 81.6 0.0 7e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|302348699|ref|YP_003816337.1| - 3.6e-09 36.3 0.9 2.8e-07 30.1 0.1 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase MFS_1 PF07690.11 gi|302348700|ref|YP_003816338.1| - 9.2e-55 185.7 44.3 9.2e-55 185.7 30.7 1.9 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|302348700|ref|YP_003816338.1| - 1.3e-12 47.0 31.0 9.5e-12 44.2 8.0 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|302348700|ref|YP_003816338.1| - 0.00029 19.1 8.7 0.00029 19.1 6.1 2.2 2 1 1 3 3 3 1 Transmembrane secretion effector Memo PF01875.12 gi|302348701|ref|YP_003816339.1| - 1.3e-81 273.5 0.0 1.5e-81 273.3 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein AA_kinase PF00696.23 gi|302348703|ref|YP_003816341.1| - 9.6e-30 103.8 1.0 1.3e-29 103.4 0.7 1.1 1 0 0 1 1 1 1 Amino acid kinase family DUF790 PF05626.6 gi|302348704|ref|YP_003816342.1| - 8e-88 294.4 0.0 1e-87 294.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.10 gi|302348705|ref|YP_003816343.1| - 1.4e-23 83.7 0.0 2.1e-22 79.8 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|302348705|ref|YP_003816343.1| - 2.4e-17 62.5 0.0 4.4e-17 61.7 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|302348705|ref|YP_003816343.1| - 6.1e-10 38.3 0.0 2e-08 33.4 0.0 2.7 1 1 2 3 3 3 1 SNF2 family N-terminal domain DEAD PF00270.24 gi|302348705|ref|YP_003816343.1| - 2.4e-08 33.6 0.0 1.2e-07 31.3 0.0 2.1 2 1 0 2 2 2 1 DEAD/DEAH box helicase FCD PF07729.7 gi|302348705|ref|YP_003816343.1| - 0.003 17.8 0.6 0.0059 16.9 0.4 1.4 1 0 0 1 1 1 1 FCD domain AP_endonuc_2 PF01261.19 gi|302348705|ref|YP_003816343.1| - 0.094 11.9 0.2 0.91 8.7 0.1 2.2 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF3701 PF12482.3 gi|302348705|ref|YP_003816343.1| - 0.11 12.2 0.1 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Phage integrase protein Saccharop_dh PF03435.13 gi|302348706|ref|YP_003816344.1| - 6.1e-44 150.5 0.0 6.8e-44 150.3 0.0 1.0 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|302348706|ref|YP_003816344.1| - 1.6e-05 24.9 0.1 2.5e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.13 gi|302348706|ref|YP_003816344.1| - 0.00082 19.0 0.1 0.0014 18.3 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|302348706|ref|YP_003816344.1| - 0.002 18.1 0.2 0.003 17.6 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|302348706|ref|YP_003816344.1| - 0.0029 17.4 0.1 0.0046 16.8 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|302348706|ref|YP_003816344.1| - 0.0045 17.2 0.0 0.007 16.6 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|302348706|ref|YP_003816344.1| - 0.014 14.8 0.0 0.023 14.0 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|302348706|ref|YP_003816344.1| - 0.029 14.1 0.1 0.087 12.5 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|302348706|ref|YP_003816344.1| - 0.072 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|302348706|ref|YP_003816344.1| - 0.075 12.4 0.1 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Na_H_Exchanger PF00999.16 gi|302348708|ref|YP_003816346.1| - 1.4e-49 168.6 48.2 1.9e-49 168.2 33.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Band_7 PF01145.20 gi|302348709|ref|YP_003816347.1| - 6e-29 101.2 2.9 7.5e-29 100.8 2.0 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|302348709|ref|YP_003816347.1| - 0.016 14.6 0.1 0.028 13.9 0.1 1.5 1 1 0 1 1 1 0 SPFH domain-Band 7 family DUF2605 PF10792.4 gi|302348709|ref|YP_003816347.1| - 0.02 14.5 2.7 0.035 13.7 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2605) NfeD PF01957.13 gi|302348710|ref|YP_003816348.1| - 1.2e-20 74.0 10.8 1.2e-20 74.0 7.5 3.2 3 0 0 3 3 3 2 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|302348710|ref|YP_003816348.1| - 2.2e-07 30.7 2.7 6.1e-07 29.2 1.8 1.6 1 1 0 1 1 1 1 Clp protease Peptidase_S49 PF01343.13 gi|302348710|ref|YP_003816348.1| - 1.1e-05 25.2 6.6 0.00029 20.6 0.3 3.4 3 0 0 3 3 3 1 Peptidase family S49 SDH_sah PF01972.11 gi|302348710|ref|YP_003816348.1| - 2.4e-05 23.2 0.5 4.1e-05 22.5 0.3 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Peripla_BP_4 PF13407.1 gi|302348710|ref|YP_003816348.1| - 0.00061 19.2 1.2 0.0012 18.2 0.8 1.5 1 0 0 1 1 1 1 Periplasmic binding protein domain PEP-utilizers PF00391.18 gi|302348710|ref|YP_003816348.1| - 0.69 9.5 4.9 0.47 10.0 0.5 2.9 3 1 1 4 4 4 0 PEP-utilising enzyme, mobile domain NfeD PF01957.13 gi|302348711|ref|YP_003816349.1| - 1.6e-13 50.9 1.6 2.3e-13 50.4 1.1 1.2 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Rieske PF00355.21 gi|302348712|ref|YP_003816350.1| - 6.2e-15 54.5 0.1 7.1e-15 54.3 0.1 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|302348712|ref|YP_003816350.1| - 2.7e-09 36.6 0.0 3.4e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain RNA_pol_Rpb8 PF03870.10 gi|302348713|ref|YP_003816351.1| - 0.026 14.7 0.1 0.064 13.4 0.0 1.7 1 1 1 2 2 2 0 RNA polymerase Rpb8 DsbC_N PF10411.4 gi|302348713|ref|YP_003816351.1| - 0.08 12.2 0.1 0.13 11.4 0.1 1.3 1 0 0 1 1 1 0 Disulfide bond isomerase protein N-terminus PUA PF01472.15 gi|302348714|ref|YP_003816352.1| - 1e-19 70.0 0.8 1.6e-19 69.4 0.6 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.5 gi|302348714|ref|YP_003816352.1| - 0.0026 17.4 0.0 0.0042 16.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) DUF308 PF03729.8 gi|302348715|ref|YP_003816353.1| - 0.027 14.4 1.9 0.027 14.4 1.3 3.0 2 1 1 3 3 3 0 Short repeat of unknown function (DUF308) YoqO PF14037.1 gi|302348715|ref|YP_003816353.1| - 0.14 12.2 5.6 0.29 11.2 0.0 2.7 2 1 1 3 3 3 0 YoqO-like protein ATP_synt_H PF05493.8 gi|302348715|ref|YP_003816353.1| - 0.27 11.3 2.2 3 7.9 0.2 2.5 2 1 0 2 2 2 0 ATP synthase subunit H PHO4 PF01384.15 gi|302348715|ref|YP_003816353.1| - 1.4 7.4 6.1 1.3 7.5 3.5 1.6 1 1 0 1 1 1 0 Phosphate transporter family Sensor PF13796.1 gi|302348715|ref|YP_003816353.1| - 5.5 6.5 11.1 3.3 7.2 1.7 2.2 2 1 0 2 2 2 0 Putative sensor DUF4234 PF14018.1 gi|302348715|ref|YP_003816353.1| - 7 6.4 8.3 0.98 9.2 0.1 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4234) COX14 PF14880.1 gi|302348715|ref|YP_003816353.1| - 7 6.3 6.5 9.1 5.9 0.2 3.0 3 0 0 3 3 3 0 Cytochrome oxidase c assembly ATP_bind_3 PF01171.15 gi|302348716|ref|YP_003816354.1| - 1.9e-16 60.1 0.0 4.6e-16 58.8 0.0 1.6 1 1 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|302348716|ref|YP_003816354.1| - 0.0059 15.9 0.1 1.6 7.9 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC HMGL-like PF00682.14 gi|302348716|ref|YP_003816354.1| - 0.071 12.7 0.1 3.1 7.4 0.0 2.2 1 1 1 2 2 2 0 HMGL-like ProRS-C_1 PF09180.6 gi|302348716|ref|YP_003816354.1| - 0.14 12.1 2.2 16 5.4 0.0 2.8 2 1 1 3 3 3 0 Prolyl-tRNA synthetase, C-terminal Peptidase_M24 PF00557.19 gi|302348717|ref|YP_003816355.1| - 2.4e-50 171.0 0.0 3e-50 170.6 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|302348717|ref|YP_003816355.1| - 6.8e-09 36.3 0.0 1.9e-08 34.8 0.0 1.8 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Ribosomal_L37e PF01907.14 gi|302348718|ref|YP_003816356.1| - 1.6e-25 88.6 9.8 1.8e-25 88.4 6.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|302348718|ref|YP_003816356.1| - 0.0069 16.1 0.6 0.0089 15.8 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RING_5 PF14634.1 gi|302348718|ref|YP_003816356.1| - 0.045 13.4 1.0 0.063 13.0 0.7 1.2 1 0 0 1 1 1 0 zinc-RING finger domain FYVE_2 PF02318.11 gi|302348718|ref|YP_003816356.1| - 0.16 11.9 0.8 0.17 11.7 0.5 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Ribosomal_L32p PF01783.18 gi|302348718|ref|YP_003816356.1| - 2.5 8.3 8.5 4.4 7.5 1.1 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family LSM PF01423.17 gi|302348719|ref|YP_003816357.1| - 7.2e-21 73.5 0.1 8.2e-21 73.3 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|302348719|ref|YP_003816357.1| - 0.0057 16.5 0.1 0.0071 16.2 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Ferritin PF00210.19 gi|302348719|ref|YP_003816357.1| - 0.041 13.6 0.0 0.041 13.6 0.0 1.0 1 0 0 1 1 1 0 Ferritin-like domain DEAD PF00270.24 gi|302348720|ref|YP_003816358.1| - 3.1e-26 91.8 0.0 5.6e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|302348720|ref|YP_003816358.1| - 3.1e-17 62.4 0.3 2.3e-15 56.4 0.0 3.6 4 0 0 4 4 4 1 Helix-hairpin-helix domain HHH PF00633.18 gi|302348720|ref|YP_003816358.1| - 7e-12 44.3 0.1 2.1e-07 30.2 0.0 3.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|302348720|ref|YP_003816358.1| - 1.8e-11 43.7 0.1 5.7e-10 38.9 0.0 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif Helicase_C PF00271.26 gi|302348720|ref|YP_003816358.1| - 1.3e-08 34.5 0.0 3.3e-08 33.2 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|302348720|ref|YP_003816358.1| - 8.6e-07 28.9 0.0 1.4e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Sec63 PF02889.11 gi|302348720|ref|YP_003816358.1| - 1.3e-06 27.8 0.0 2e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain DNA_pol_lambd_f PF10391.4 gi|302348720|ref|YP_003816358.1| - 6.5e-05 22.3 0.0 0.00035 20.0 0.0 2.3 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.1 gi|302348720|ref|YP_003816358.1| - 0.0018 18.2 0.0 0.0057 16.6 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Arch_ATPase PF01637.13 gi|302348720|ref|YP_003816358.1| - 0.0053 16.4 0.1 0.011 15.4 0.1 1.5 1 0 0 1 1 1 1 Archaeal ATPase SNF2_N PF00176.18 gi|302348720|ref|YP_003816358.1| - 0.0056 15.5 0.0 0.0086 14.9 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Cdd1 PF11731.3 gi|302348720|ref|YP_003816358.1| - 0.0066 16.3 0.0 0.029 14.2 0.0 2.0 1 1 1 2 2 2 1 Pathogenicity locus IMS_HHH PF11798.3 gi|302348720|ref|YP_003816358.1| - 0.012 15.6 0.0 1.4 9.1 0.0 2.9 2 0 0 2 2 2 0 IMS family HHH motif HHH_3 PF12836.2 gi|302348720|ref|YP_003816358.1| - 0.012 15.5 0.0 0.13 12.2 0.0 2.3 1 1 0 1 1 1 0 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|302348720|ref|YP_003816358.1| - 0.014 15.5 0.1 0.26 11.4 0.0 2.6 1 1 1 2 2 2 0 Helix-hairpin-helix domain AAA_22 PF13401.1 gi|302348720|ref|YP_003816358.1| - 0.035 14.2 0.0 0.17 12.0 0.0 2.1 2 0 0 2 2 1 0 AAA domain DUF3701 PF12482.3 gi|302348720|ref|YP_003816358.1| - 0.059 13.1 0.0 0.2 11.3 0.0 1.9 1 0 0 1 1 1 0 Phage integrase protein RNA_pol_A_CTD PF03118.10 gi|302348720|ref|YP_003816358.1| - 0.065 12.6 0.0 0.2 11.0 0.0 1.8 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain Pyridox_oxidase PF01243.15 gi|302348720|ref|YP_003816358.1| - 0.068 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase MCM PF00493.18 gi|302348721|ref|YP_003816359.1| - 2.8e-134 447.0 0.0 8.7e-134 445.4 0.0 1.7 2 0 0 2 2 2 1 MCM2/3/5 family MCM_N PF14551.1 gi|302348721|ref|YP_003816359.1| - 1.1e-25 90.5 1.6 2.3e-25 89.4 0.3 2.2 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.9 gi|302348721|ref|YP_003816359.1| - 3.5e-06 26.7 0.0 7e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|302348721|ref|YP_003816359.1| - 3.9e-06 26.1 0.0 0.001 18.2 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|302348721|ref|YP_003816359.1| - 0.00011 21.7 0.0 0.00026 20.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2540 PF10802.3 gi|302348721|ref|YP_003816359.1| - 0.081 12.6 0.3 0.081 12.6 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2540) Sld5 PF05916.6 gi|302348722|ref|YP_003816360.1| - 6.7e-05 23.1 0.0 9.3e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 GINS complex protein Rep_fac_C PF08542.6 gi|302348723|ref|YP_003816361.1| - 1e-23 83.0 0.0 7.9e-23 80.2 0.0 2.3 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|302348723|ref|YP_003816361.1| - 1.4e-16 60.9 0.0 3.1e-16 59.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|302348723|ref|YP_003816361.1| - 2.9e-15 56.3 0.0 3.2e-13 49.6 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|302348723|ref|YP_003816361.1| - 2.5e-10 39.6 0.0 1.9e-05 23.5 0.0 2.1 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|302348723|ref|YP_003816361.1| - 1e-08 35.4 0.3 0.0068 16.5 0.0 3.1 2 2 1 3 3 3 2 AAA domain RuvB_N PF05496.7 gi|302348723|ref|YP_003816361.1| - 1.8e-08 33.7 0.0 4.4e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|302348723|ref|YP_003816361.1| - 1e-06 28.8 0.0 0.00036 20.5 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|302348723|ref|YP_003816361.1| - 1.6e-06 28.0 0.0 3.7e-06 26.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|302348723|ref|YP_003816361.1| - 2.2e-06 27.3 0.0 3.7e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|302348723|ref|YP_003816361.1| - 5.5e-06 26.7 0.3 8.2e-05 22.9 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|302348723|ref|YP_003816361.1| - 8.5e-06 25.5 0.0 5.3e-05 22.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.1 gi|302348723|ref|YP_003816361.1| - 1.6e-05 24.9 0.0 6.2e-05 23.0 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain DNA_pol3_delta PF06144.8 gi|302348723|ref|YP_003816361.1| - 1.8e-05 24.3 0.0 0.00014 21.4 0.0 2.1 2 1 1 3 3 3 1 DNA polymerase III, delta subunit TIP49 PF06068.8 gi|302348723|ref|YP_003816361.1| - 0.00012 21.0 0.0 0.04 12.6 0.0 2.3 2 0 0 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|302348723|ref|YP_003816361.1| - 0.00012 22.8 0.1 0.00042 21.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|302348723|ref|YP_003816361.1| - 0.00016 21.3 0.0 0.00037 20.1 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|302348723|ref|YP_003816361.1| - 0.00017 20.8 0.0 0.0028 16.8 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|302348723|ref|YP_003816361.1| - 0.00021 20.8 0.0 0.0011 18.4 0.0 2.1 2 1 0 2 2 2 1 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|302348723|ref|YP_003816361.1| - 0.00024 20.5 0.0 0.00052 19.4 0.0 1.5 1 1 0 1 1 1 1 IstB-like ATP binding protein PhoH PF02562.11 gi|302348723|ref|YP_003816361.1| - 0.00071 18.8 0.1 0.14 11.3 0.0 2.3 1 1 0 2 2 2 1 PhoH-like protein AAA_10 PF12846.2 gi|302348723|ref|YP_003816361.1| - 0.00089 18.7 0.0 0.21 10.9 0.0 2.4 1 1 1 2 2 2 1 AAA-like domain DUF815 PF05673.8 gi|302348723|ref|YP_003816361.1| - 0.0011 17.9 0.0 0.0017 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|302348723|ref|YP_003816361.1| - 0.0012 18.2 2.5 0.018 14.4 0.1 3.0 2 2 1 3 3 3 1 AAA domain KTI12 PF08433.5 gi|302348723|ref|YP_003816361.1| - 0.0014 17.9 0.0 0.0023 17.1 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.1 gi|302348723|ref|YP_003816361.1| - 0.0017 18.2 0.0 0.0045 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|302348723|ref|YP_003816361.1| - 0.0043 17.0 0.0 0.0076 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|302348723|ref|YP_003816361.1| - 0.0071 15.9 0.0 0.01 15.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|302348723|ref|YP_003816361.1| - 0.0082 15.7 0.3 0.1 12.1 0.1 2.5 2 1 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|302348723|ref|YP_003816361.1| - 0.0085 15.2 0.0 0.028 13.5 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin ResIII PF04851.10 gi|302348723|ref|YP_003816361.1| - 0.0088 15.8 0.0 0.035 13.9 0.0 1.9 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit Sigma54_activat PF00158.21 gi|302348723|ref|YP_003816361.1| - 0.0089 15.5 0.1 0.36 10.3 0.0 2.5 3 0 0 3 3 2 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|302348723|ref|YP_003816361.1| - 0.0097 15.6 0.0 0.024 14.3 0.0 1.6 1 1 1 2 2 2 1 Archaeal ATPase RNA_helicase PF00910.17 gi|302348723|ref|YP_003816361.1| - 0.011 15.8 0.0 0.024 14.7 0.0 1.6 2 0 0 2 2 1 0 RNA helicase T2SE PF00437.15 gi|302348723|ref|YP_003816361.1| - 0.013 14.4 0.0 0.039 12.8 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_2 PF07724.9 gi|302348723|ref|YP_003816361.1| - 0.015 15.2 0.0 0.073 12.9 0.0 2.3 2 1 0 2 2 1 0 AAA domain (Cdc48 subfamily) SNF2_N PF00176.18 gi|302348723|ref|YP_003816361.1| - 0.016 14.0 0.0 2.8 6.6 0.0 2.1 1 1 1 2 2 2 0 SNF2 family N-terminal domain Viral_helicase1 PF01443.13 gi|302348723|ref|YP_003816361.1| - 0.026 14.0 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.10 gi|302348723|ref|YP_003816361.1| - 0.027 14.1 0.0 0.37 10.5 0.0 2.2 1 1 1 2 2 2 0 NTPase DUF2075 PF09848.4 gi|302348723|ref|YP_003816361.1| - 0.038 12.9 0.0 0.19 10.6 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.1 gi|302348723|ref|YP_003816361.1| - 0.039 13.4 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DEAD PF00270.24 gi|302348723|ref|YP_003816361.1| - 0.047 13.1 0.1 10 5.5 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.7 gi|302348723|ref|YP_003816361.1| - 0.053 13.1 0.0 0.19 11.3 0.0 1.9 1 1 0 1 1 1 0 NACHT domain APS_kinase PF01583.15 gi|302348723|ref|YP_003816361.1| - 0.064 12.9 0.0 0.22 11.1 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase TPR_6 PF13174.1 gi|302348723|ref|YP_003816361.1| - 0.093 13.2 0.7 51 4.6 0.0 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat SseB_C PF14581.1 gi|302348723|ref|YP_003816361.1| - 0.098 12.5 0.0 0.34 10.7 0.0 1.9 1 0 0 1 1 1 0 SseB protein C-terminal domain NB-ARC PF00931.17 gi|302348723|ref|YP_003816361.1| - 0.11 11.2 0.0 0.16 10.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain TPR_16 PF13432.1 gi|302348723|ref|YP_003816361.1| - 0.73 10.5 4.2 54 4.6 0.2 4.2 5 0 0 5 5 4 0 Tetratricopeptide repeat AAA PF00004.24 gi|302348724|ref|YP_003816362.1| - 2.7e-13 50.2 0.0 6e-13 49.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|302348724|ref|YP_003816362.1| - 4.9e-08 33.1 0.0 2.1e-07 31.1 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|302348724|ref|YP_003816362.1| - 6.2e-07 28.6 0.0 3.4e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|302348724|ref|YP_003816362.1| - 1.1e-05 24.4 0.0 4.7e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|302348724|ref|YP_003816362.1| - 3.4e-05 24.6 0.4 0.0003 21.6 0.1 2.7 1 1 2 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|302348724|ref|YP_003816362.1| - 6.5e-05 23.0 0.0 0.00054 20.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|302348724|ref|YP_003816362.1| - 9.7e-05 22.1 0.0 0.00021 21.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|302348724|ref|YP_003816362.1| - 0.0003 20.5 0.0 0.00062 19.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial dnaA protein Rad17 PF03215.10 gi|302348724|ref|YP_003816362.1| - 0.00058 18.6 0.0 0.012 14.3 0.0 2.2 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|302348724|ref|YP_003816362.1| - 0.00069 19.5 0.0 0.0013 18.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|302348724|ref|YP_003816362.1| - 0.0022 17.6 0.0 0.0058 16.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|302348724|ref|YP_003816362.1| - 0.0023 17.6 0.4 0.0071 16.0 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|302348724|ref|YP_003816362.1| - 0.0039 16.3 0.0 0.0068 15.5 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.1 gi|302348724|ref|YP_003816362.1| - 0.0063 15.9 0.5 0.02 14.3 0.1 2.1 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|302348724|ref|YP_003816362.1| - 0.011 15.6 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF258 PF03193.11 gi|302348724|ref|YP_003816362.1| - 0.016 14.3 0.0 0.03 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|302348724|ref|YP_003816362.1| - 0.02 14.5 0.0 0.14 11.8 0.0 2.2 2 1 0 3 3 2 0 Archaeal ATPase AAA_18 PF13238.1 gi|302348724|ref|YP_003816362.1| - 0.024 14.9 0.0 0.63 10.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain DNA_pol3_delta PF06144.8 gi|302348724|ref|YP_003816362.1| - 0.026 14.0 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit PPV_E1_C PF00519.12 gi|302348724|ref|YP_003816362.1| - 0.1 11.1 0.0 0.21 10.1 0.0 1.4 1 0 0 1 1 1 0 Papillomavirus helicase AAA_29 PF13555.1 gi|302348724|ref|YP_003816362.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|302348724|ref|YP_003816362.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein TIP49 PF06068.8 gi|302348724|ref|YP_003816362.1| - 0.18 10.5 0.0 5.3 5.6 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus AMP-binding PF00501.23 gi|302348725|ref|YP_003816363.1| - 3.5e-70 236.4 0.1 4.1e-70 236.2 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|302348725|ref|YP_003816363.1| - 1.5e-10 41.8 1.4 1.9e-10 41.5 0.1 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MR_MLE_C PF13378.1 gi|302348726|ref|YP_003816364.1| - 8.2e-22 77.2 0.0 1.7e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|302348726|ref|YP_003816364.1| - 2.9e-13 50.1 0.1 2.9e-12 46.9 0.0 2.4 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|302348726|ref|YP_003816364.1| - 7.4e-13 48.5 0.0 1.4e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PadR PF03551.9 gi|302348728|ref|YP_003816366.1| - 8.8e-12 44.6 0.0 1.4e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|302348728|ref|YP_003816366.1| - 3.2e-05 23.6 0.0 5.7e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|302348728|ref|YP_003816366.1| - 0.0055 16.3 0.1 0.0098 15.5 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.1 gi|302348728|ref|YP_003816366.1| - 0.0073 15.9 0.0 0.0089 15.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Rrf2 PF02082.15 gi|302348728|ref|YP_003816366.1| - 0.013 15.6 0.0 0.048 13.7 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_27 PF13463.1 gi|302348728|ref|YP_003816366.1| - 0.014 15.7 0.0 0.028 14.7 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|302348728|ref|YP_003816366.1| - 0.021 14.2 0.0 0.11 11.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|302348728|ref|YP_003816366.1| - 0.026 14.5 0.0 0.04 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain YjcQ PF09639.5 gi|302348728|ref|YP_003816366.1| - 0.074 13.1 0.0 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 YjcQ protein MarR PF01047.17 gi|302348728|ref|YP_003816366.1| - 0.077 12.7 0.0 0.17 11.5 0.0 1.7 1 1 0 1 1 1 0 MarR family FUR PF01475.14 gi|302348728|ref|YP_003816366.1| - 0.082 12.8 0.0 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_12 PF08461.5 gi|302348728|ref|YP_003816366.1| - 0.084 12.6 0.2 0.39 10.4 0.0 2.0 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Peptidase_M20 PF01546.23 gi|302348729|ref|YP_003816367.1| - 8.1e-37 126.5 0.0 1e-36 126.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|302348729|ref|YP_003816367.1| - 5.6e-17 61.4 0.0 9.8e-17 60.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain pRN1_helical PF13010.1 gi|302348729|ref|YP_003816367.1| - 0.044 13.4 0.1 0.082 12.5 0.1 1.3 1 0 0 1 1 1 0 Primase helical domain AhpC-TSA PF00578.16 gi|302348730|ref|YP_003816368.1| - 5.5e-39 132.6 0.0 7e-39 132.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|302348730|ref|YP_003816368.1| - 1.5e-17 63.5 0.1 1.7e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin M60-like PF13402.1 gi|302348730|ref|YP_003816368.1| - 0.14 11.0 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 Peptidase M60-like family ParA PF10609.4 gi|302348731|ref|YP_003816369.1| - 7.2e-28 96.2 0.0 1.7e-27 95.0 0.0 1.7 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|302348731|ref|YP_003816369.1| - 2.7e-13 49.7 0.0 4.4e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|302348731|ref|YP_003816369.1| - 2.2e-09 36.9 0.0 0.00016 20.9 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|302348731|ref|YP_003816369.1| - 2.9e-06 27.3 0.0 7.7e-06 25.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|302348731|ref|YP_003816369.1| - 5.8e-05 22.5 0.0 0.00028 20.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|302348731|ref|YP_003816369.1| - 0.00028 20.0 0.0 0.00041 19.5 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|302348731|ref|YP_003816369.1| - 0.0014 18.3 0.8 0.76 9.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|302348731|ref|YP_003816369.1| - 0.0031 16.6 0.5 0.0057 15.7 0.3 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|302348731|ref|YP_003816369.1| - 0.0055 16.0 0.2 0.035 13.4 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein Ribosomal_L23 PF00276.15 gi|302348732|ref|YP_003816370.1| - 1e-19 70.2 0.3 1.4e-19 69.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L4 PF00573.17 gi|302348733|ref|YP_003816371.1| - 2e-37 128.4 0.0 2.3e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|302348734|ref|YP_003816372.1| - 1.2e-51 175.6 0.0 1.4e-51 175.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 HAD_2 PF13419.1 gi|302348735|ref|YP_003816373.1| - 1.2e-17 64.6 0.0 1.6e-17 64.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|302348735|ref|YP_003816373.1| - 4.5e-14 53.3 0.1 9.5e-14 52.3 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|302348735|ref|YP_003816373.1| - 9.2e-09 35.7 0.0 1.2e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|302348735|ref|YP_003816373.1| - 2.6e-05 23.8 0.0 6.7e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_3 PF08282.7 gi|302348735|ref|YP_003816373.1| - 0.043 13.3 0.0 9.9 5.6 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|302348735|ref|YP_003816373.1| - 0.11 12.3 0.0 3.2 7.6 0.0 2.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase RepL PF05732.6 gi|302348735|ref|YP_003816373.1| - 0.14 11.3 0.1 2.1 7.5 0.0 2.1 1 1 1 2 2 2 0 Firmicute plasmid replication protein (RepL) Macro PF01661.16 gi|302348737|ref|YP_003816375.1| - 1.4e-29 102.3 0.2 1.9e-29 101.9 0.1 1.2 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.1 gi|302348737|ref|YP_003816375.1| - 2.4e-05 23.6 0.3 0.0008 18.6 0.2 2.4 1 1 0 1 1 1 1 Macro-like domain HK97-gp10_like PF04883.7 gi|302348737|ref|YP_003816375.1| - 0.14 13.1 1.3 0.25 12.2 0.2 1.9 2 0 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component ABC_tran PF00005.22 gi|302348738|ref|YP_003816376.1| - 2.1e-28 99.3 0.0 2.9e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302348738|ref|YP_003816376.1| - 2e-11 44.4 0.0 0.00021 21.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|302348738|ref|YP_003816376.1| - 1.6e-05 24.3 0.0 0.00011 21.7 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|302348738|ref|YP_003816376.1| - 1.9e-05 23.9 0.0 0.0024 17.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|302348738|ref|YP_003816376.1| - 5.2e-05 22.4 0.0 8.1e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|302348738|ref|YP_003816376.1| - 6.7e-05 23.2 0.0 9.9e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|302348738|ref|YP_003816376.1| - 0.00013 21.2 0.2 0.13 11.4 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|302348738|ref|YP_003816376.1| - 0.00077 19.4 0.0 0.0034 17.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|302348738|ref|YP_003816376.1| - 0.0011 19.2 0.1 0.9 9.7 0.0 2.5 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|302348738|ref|YP_003816376.1| - 0.0019 18.3 0.1 0.0056 16.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|302348738|ref|YP_003816376.1| - 0.0024 18.6 0.1 0.0062 17.3 0.1 1.7 2 0 0 2 2 1 1 AAA domain T2SE PF00437.15 gi|302348738|ref|YP_003816376.1| - 0.0029 16.5 0.0 0.0042 16.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein MobB PF03205.9 gi|302348738|ref|YP_003816376.1| - 0.0067 16.1 0.0 0.02 14.5 0.0 1.8 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B MutS_V PF00488.16 gi|302348738|ref|YP_003816376.1| - 0.0078 15.6 0.0 0.016 14.5 0.0 1.5 1 0 0 1 1 1 1 MutS domain V AAA_30 PF13604.1 gi|302348738|ref|YP_003816376.1| - 0.0086 15.6 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|302348738|ref|YP_003816376.1| - 0.0088 15.7 0.1 0.033 13.9 0.0 1.9 2 0 0 2 2 1 1 Part of AAA domain AAA_25 PF13481.1 gi|302348738|ref|YP_003816376.1| - 0.012 14.9 0.0 0.024 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|302348738|ref|YP_003816376.1| - 0.012 15.4 0.2 0.018 14.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|302348738|ref|YP_003816376.1| - 0.014 14.8 0.2 0.035 13.5 0.1 1.7 2 0 0 2 2 2 0 AAA-like domain Rad17 PF03215.10 gi|302348738|ref|YP_003816376.1| - 0.018 13.7 0.0 0.02 13.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_18 PF13238.1 gi|302348738|ref|YP_003816376.1| - 0.024 14.9 0.1 0.046 14.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain Amidohydro_4 PF13147.1 gi|302348738|ref|YP_003816376.1| - 0.031 14.3 0.1 0.046 13.7 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase Arch_ATPase PF01637.13 gi|302348738|ref|YP_003816376.1| - 0.04 13.6 0.0 0.088 12.4 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|302348738|ref|YP_003816376.1| - 0.041 13.8 0.4 0.069 13.1 0.3 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.1 gi|302348738|ref|YP_003816376.1| - 0.041 13.8 0.0 0.091 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|302348738|ref|YP_003816376.1| - 0.041 12.9 0.0 0.069 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Adeno_IVa2 PF02456.10 gi|302348738|ref|YP_003816376.1| - 0.043 12.4 0.0 0.067 11.8 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein ABC_ATPase PF09818.4 gi|302348738|ref|YP_003816376.1| - 0.074 11.6 0.0 7.4 5.0 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF3987 PF13148.1 gi|302348738|ref|YP_003816376.1| - 0.082 11.4 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) NB-ARC PF00931.17 gi|302348738|ref|YP_003816376.1| - 0.085 11.6 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA12 PF10443.4 gi|302348738|ref|YP_003816376.1| - 0.1 11.0 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein NACHT PF05729.7 gi|302348738|ref|YP_003816376.1| - 0.13 11.8 0.1 0.28 10.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|302348738|ref|YP_003816376.1| - 0.15 11.9 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|302348739|ref|YP_003816377.1| - 1.7e-15 57.0 44.9 3.9e-13 49.3 9.6 3.2 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component ADH_zinc_N PF00107.21 gi|302348740|ref|YP_003816378.1| - 2.2e-16 59.6 0.1 5.3e-16 58.3 0.0 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|302348740|ref|YP_003816378.1| - 1.7e-11 43.8 0.6 1.1e-09 37.9 0.1 2.9 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|302348740|ref|YP_003816378.1| - 1.2e-08 35.8 0.0 3.5e-08 34.3 0.0 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase adh_short PF00106.20 gi|302348740|ref|YP_003816378.1| - 0.055 13.3 0.6 0.22 11.4 0.3 1.9 2 0 0 2 2 2 0 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|302348740|ref|YP_003816378.1| - 0.092 13.0 0.1 0.16 12.3 0.1 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|302348741|ref|YP_003816379.1| - 1.7e-23 83.2 0.0 2.8e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|302348741|ref|YP_003816379.1| - 3.8e-12 46.3 0.2 7.8e-12 45.3 0.2 1.5 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|302348741|ref|YP_003816379.1| - 1.6e-06 27.4 0.0 2.6e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|302348741|ref|YP_003816379.1| - 9.8e-06 25.9 0.0 4.5e-05 23.8 0.0 2.2 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|302348741|ref|YP_003816379.1| - 4.2e-05 23.2 0.0 7.4e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|302348741|ref|YP_003816379.1| - 0.0024 17.8 0.0 0.0071 16.3 0.0 1.9 1 0 0 1 1 1 1 TrkA-N domain DDE_Tnp_Tn3 PF01526.12 gi|302348741|ref|YP_003816379.1| - 0.096 11.2 0.0 0.15 10.6 0.0 1.3 1 0 0 1 1 1 0 Tn3 transposase DDE domain UDPG_MGDP_dh_N PF03721.9 gi|302348741|ref|YP_003816379.1| - 0.1 11.9 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RuvA_C PF07499.8 gi|302348741|ref|YP_003816379.1| - 0.13 12.4 6.7 0.5 10.5 0.1 3.0 2 1 0 2 2 2 0 RuvA, C-terminal domain Ribonuc_L-PSP PF01042.16 gi|302348742|ref|YP_003816380.1| - 7.8e-43 145.0 0.0 8.7e-43 144.9 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP ApbA_C PF08546.6 gi|302348742|ref|YP_003816380.1| - 0.09 12.7 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA C terminal DUF357 PF04010.8 gi|302348743|ref|YP_003816381.1| - 4.5e-16 58.2 0.5 7.5e-16 57.6 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|302348743|ref|YP_003816381.1| - 9.3e-10 38.7 0.0 1.8e-09 37.8 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|302348743|ref|YP_003816381.1| - 0.011 15.3 0.0 0.026 14.1 0.0 1.8 1 1 0 1 1 1 0 FAD synthetase T4_deiodinase PF00837.12 gi|302348743|ref|YP_003816381.1| - 0.16 10.9 0.0 0.28 10.1 0.0 1.3 1 0 0 1 1 1 0 Iodothyronine deiodinase Spt5-NGN PF03439.8 gi|302348744|ref|YP_003816382.1| - 5.2e-13 48.5 0.0 8.2e-13 47.9 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|302348744|ref|YP_003816382.1| - 8.8e-05 22.0 3.3 0.00027 20.5 2.3 1.8 1 0 0 1 1 1 1 KOW motif NusG PF02357.14 gi|302348744|ref|YP_003816382.1| - 0.14 12.4 0.1 0.46 10.7 0.1 1.8 1 1 0 1 1 1 0 Transcription termination factor nusG LHC PF00556.15 gi|302348745|ref|YP_003816383.1| - 0.35 10.7 1.7 0.44 10.4 0.6 1.7 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit AMMECR1 PF01871.12 gi|302348746|ref|YP_003816384.1| - 9e-56 187.6 0.0 1.1e-55 187.3 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 zf-FPG_IleRS PF06827.9 gi|302348747|ref|YP_003816385.1| - 0.0098 15.5 0.1 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS PP_kinase_C PF13090.1 gi|302348747|ref|YP_003816385.1| - 0.068 11.7 0.0 0.068 11.7 0.0 1.1 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain DUF2175 PF09943.4 gi|302348747|ref|YP_003816385.1| - 0.091 12.8 0.1 0.12 12.4 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) PRP21_like_P PF12230.3 gi|302348747|ref|YP_003816385.1| - 0.099 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein zf-C2H2 PF00096.21 gi|302348747|ref|YP_003816385.1| - 0.11 12.8 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type Rad50_zn_hook PF04423.9 gi|302348747|ref|YP_003816385.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C2H2_jaz PF12171.3 gi|302348747|ref|YP_003816385.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-Di19 PF05605.7 gi|302348747|ref|YP_003816385.1| - 0.13 12.3 0.1 0.17 12.0 0.0 1.4 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Endonuclease_5 PF04493.9 gi|302348748|ref|YP_003816386.1| - 4.1e-42 143.8 0.0 5.3e-42 143.5 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V Proteasome PF00227.21 gi|302348749|ref|YP_003816387.1| - 1.2e-50 171.4 1.2 1.4e-50 171.2 0.8 1.0 1 0 0 1 1 1 1 Proteasome subunit MarR_2 PF12802.2 gi|302348750|ref|YP_003816388.1| - 0.0028 17.2 0.1 0.0073 15.9 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|302348750|ref|YP_003816388.1| - 0.011 15.7 0.1 0.055 13.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|302348750|ref|YP_003816388.1| - 0.022 14.4 0.1 0.41 10.3 0.0 2.9 3 0 0 3 3 3 0 Homeodomain-like domain HTH_8 PF02954.14 gi|302348750|ref|YP_003816388.1| - 0.025 14.1 0.1 0.22 11.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_DeoR PF08220.7 gi|302348750|ref|YP_003816388.1| - 0.026 14.0 0.0 0.098 12.2 0.0 2.1 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|302348750|ref|YP_003816388.1| - 0.034 14.0 0.3 0.092 12.6 0.1 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|302348750|ref|YP_003816388.1| - 0.036 13.5 1.4 0.26 10.7 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|302348750|ref|YP_003816388.1| - 0.043 13.4 0.0 0.14 11.7 0.0 1.9 1 0 0 1 1 1 0 HTH domain DUF1974 PF09317.6 gi|302348750|ref|YP_003816388.1| - 0.051 12.9 0.0 0.068 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1974) HTH_29 PF13551.1 gi|302348750|ref|YP_003816388.1| - 0.071 13.2 0.0 1 9.5 0.0 2.7 3 0 0 3 3 3 0 Winged helix-turn helix DASH_Dad2 PF08654.5 gi|302348750|ref|YP_003816388.1| - 0.072 13.1 0.3 0.22 11.5 0.2 1.8 1 1 0 1 1 1 0 DASH complex subunit Dad2 HTH_24 PF13412.1 gi|302348750|ref|YP_003816388.1| - 0.13 11.6 1.8 0.15 11.4 0.0 2.0 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_17 PF12728.2 gi|302348750|ref|YP_003816388.1| - 0.15 12.2 0.4 0.53 10.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain AAA PF00004.24 gi|302348751|ref|YP_003816389.1| - 7.9e-38 129.6 0.0 2e-37 128.3 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.13 gi|302348751|ref|YP_003816389.1| - 1.2e-06 28.2 2.8 2.7e-06 27.1 1.9 1.6 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_22 PF13401.1 gi|302348751|ref|YP_003816389.1| - 1.4e-06 28.4 0.0 0.00048 20.2 0.0 3.3 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|302348751|ref|YP_003816389.1| - 2.6e-06 27.1 0.0 2.2e-05 24.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|302348751|ref|YP_003816389.1| - 5.2e-06 26.5 0.0 0.0016 18.4 0.0 3.1 2 1 1 4 4 3 1 AAA ATPase domain AAA_14 PF13173.1 gi|302348751|ref|YP_003816389.1| - 1.1e-05 25.3 0.0 6.3e-05 22.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain Vps4_C PF09336.5 gi|302348751|ref|YP_003816389.1| - 1.4e-05 24.8 0.1 6.4e-05 22.7 0.1 2.0 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_25 PF13481.1 gi|302348751|ref|YP_003816389.1| - 1.5e-05 24.4 1.0 0.00066 19.1 0.2 2.7 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|302348751|ref|YP_003816389.1| - 2.3e-05 23.5 0.0 0.0013 17.8 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|302348751|ref|YP_003816389.1| - 3.6e-05 23.7 0.0 8.7e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_19 PF13245.1 gi|302348751|ref|YP_003816389.1| - 0.00029 20.5 0.0 0.00077 19.1 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|302348751|ref|YP_003816389.1| - 0.00044 19.7 0.1 0.2 11.0 0.0 2.8 3 0 0 3 3 2 1 AAA-like domain AAA_33 PF13671.1 gi|302348751|ref|YP_003816389.1| - 0.00054 19.8 0.0 0.0034 17.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|302348751|ref|YP_003816389.1| - 0.00055 19.0 1.8 0.0077 15.3 0.0 3.1 4 0 0 4 4 3 1 Zeta toxin AAA_17 PF13207.1 gi|302348751|ref|YP_003816389.1| - 0.00055 20.7 3.4 0.00078 20.2 0.4 2.7 2 2 0 2 2 1 1 AAA domain TIP49 PF06068.8 gi|302348751|ref|YP_003816389.1| - 0.00065 18.5 0.2 0.0028 16.4 0.1 1.8 1 1 1 2 2 2 1 TIP49 C-terminus Arch_ATPase PF01637.13 gi|302348751|ref|YP_003816389.1| - 0.00074 19.2 1.5 1.4 8.5 0.0 3.6 2 1 2 4 4 4 2 Archaeal ATPase IstB_IS21 PF01695.12 gi|302348751|ref|YP_003816389.1| - 0.00083 18.8 0.0 0.0017 17.7 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|302348751|ref|YP_003816389.1| - 0.00094 19.3 0.0 0.0079 16.3 0.0 2.4 3 0 0 3 3 3 1 RNA helicase Mg_chelatase PF01078.16 gi|302348751|ref|YP_003816389.1| - 0.002 17.3 0.0 0.0044 16.2 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|302348751|ref|YP_003816389.1| - 0.0028 17.3 0.0 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_24 PF13479.1 gi|302348751|ref|YP_003816389.1| - 0.0063 16.1 0.6 0.03 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain TPR_6 PF13174.1 gi|302348751|ref|YP_003816389.1| - 0.0076 16.6 0.2 0.035 14.5 0.1 2.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|302348751|ref|YP_003816389.1| - 0.0092 15.6 0.8 0.02 14.5 0.6 1.6 1 0 0 1 1 1 1 TPR repeat AAA_18 PF13238.1 gi|302348751|ref|YP_003816389.1| - 0.016 15.5 1.9 0.11 12.7 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.1 gi|302348751|ref|YP_003816389.1| - 0.018 15.0 0.1 0.058 13.3 0.0 1.9 2 0 0 2 2 1 0 AAA domain ResIII PF04851.10 gi|302348751|ref|YP_003816389.1| - 0.02 14.7 0.0 0.05 13.4 0.0 1.7 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit Sigma54_activat PF00158.21 gi|302348751|ref|YP_003816389.1| - 0.02 14.3 0.0 0.11 11.9 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|302348751|ref|YP_003816389.1| - 0.03 13.9 0.0 0.062 12.8 0.0 1.7 2 1 0 2 2 1 0 AAA domain PhoH PF02562.11 gi|302348751|ref|YP_003816389.1| - 0.045 12.9 0.3 0.13 11.5 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein KaiC PF06745.8 gi|302348751|ref|YP_003816389.1| - 0.055 12.5 0.2 0.57 9.2 0.0 2.4 2 1 1 3 3 3 0 KaiC Parvo_NS1 PF01057.12 gi|302348751|ref|YP_003816389.1| - 0.071 11.9 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 SnAPC_2_like PF11035.3 gi|302348751|ref|YP_003816389.1| - 0.078 12.4 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Small nuclear RNA activating complex subunit 2-like DUF1569 PF07606.6 gi|302348751|ref|YP_003816389.1| - 0.16 11.8 0.1 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1569) TPR_16 PF13432.1 gi|302348751|ref|YP_003816389.1| - 0.24 12.1 2.0 0.84 10.3 0.5 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat AAA_23 PF13476.1 gi|302348751|ref|YP_003816389.1| - 0.25 11.6 2.0 3 8.1 0.1 2.8 2 1 0 2 2 2 0 AAA domain TPR_2 PF07719.12 gi|302348751|ref|YP_003816389.1| - 1.3 9.1 6.3 0.55 10.2 0.7 2.6 2 1 1 3 3 3 0 Tetratricopeptide repeat Methyltransf_18 PF12847.2 gi|302348752|ref|YP_003816390.1| - 2.8e-15 56.8 0.0 3.3e-13 50.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|302348752|ref|YP_003816390.1| - 1.3e-13 51.0 0.0 3.1e-12 46.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|302348752|ref|YP_003816390.1| - 8.4e-07 28.7 0.0 1.3e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|302348752|ref|YP_003816390.1| - 1.8e-05 24.1 0.0 2.6e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|302348752|ref|YP_003816390.1| - 2.3e-05 24.0 0.0 4.5e-05 23.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|302348752|ref|YP_003816390.1| - 0.00028 20.0 0.0 0.00036 19.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|302348752|ref|YP_003816390.1| - 0.0013 19.1 0.0 0.006 16.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|302348752|ref|YP_003816390.1| - 0.0015 18.2 0.0 0.014 15.0 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|302348752|ref|YP_003816390.1| - 0.0017 19.1 0.0 0.008 16.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|302348752|ref|YP_003816390.1| - 0.0023 17.3 0.0 0.0034 16.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RrnaAD PF00398.15 gi|302348752|ref|YP_003816390.1| - 0.0027 16.7 0.0 0.0037 16.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Spermine_synth PF01564.12 gi|302348752|ref|YP_003816390.1| - 0.003 16.5 0.0 0.0036 16.2 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_3 PF01596.12 gi|302348752|ref|YP_003816390.1| - 0.0064 15.5 0.0 0.087 11.8 0.0 2.1 2 0 0 2 2 2 1 O-methyltransferase Methyltransf_12 PF08242.7 gi|302348752|ref|YP_003816390.1| - 0.096 13.1 0.0 0.33 11.4 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|302348752|ref|YP_003816390.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF87 PF01935.12 gi|302348753|ref|YP_003816391.1| - 5.3e-48 163.8 0.0 8e-48 163.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|302348753|ref|YP_003816391.1| - 6.8e-20 71.7 0.0 2.8e-19 69.6 0.0 1.8 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|302348753|ref|YP_003816391.1| - 1.6e-06 26.7 0.0 0.00018 20.0 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|302348753|ref|YP_003816391.1| - 0.0017 17.8 0.0 0.3 10.5 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|302348753|ref|YP_003816391.1| - 0.012 14.2 0.0 0.061 11.9 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.5 gi|302348754|ref|YP_003816392.1| - 2e-17 63.4 0.0 5.5e-17 62.0 0.0 1.6 1 1 0 1 1 1 1 NurA domain SMC_N PF02463.14 gi|302348755|ref|YP_003816393.1| - 4.7e-25 88.1 0.4 1.4e-24 86.5 0.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|302348755|ref|YP_003816393.1| - 1.2e-21 76.8 30.1 8.9e-18 64.1 5.1 5.3 2 1 2 4 4 4 2 AAA domain AAA_23 PF13476.1 gi|302348755|ref|YP_003816393.1| - 8.2e-18 65.4 40.2 5.3e-10 39.9 27.8 5.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|302348755|ref|YP_003816393.1| - 4.9e-13 49.6 0.1 4.1e-07 30.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Rad50_zn_hook PF04423.9 gi|302348755|ref|YP_003816393.1| - 1.6e-09 37.1 4.5 5.4e-09 35.3 0.1 4.2 3 0 0 3 3 3 1 Rad50 zinc hook motif SbcCD_C PF13558.1 gi|302348755|ref|YP_003816393.1| - 7.2e-09 35.4 0.0 1.9e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|302348755|ref|YP_003816393.1| - 4.3e-08 32.6 0.0 0.00018 20.6 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain ABC_tran PF00005.22 gi|302348755|ref|YP_003816393.1| - 1.9e-07 31.4 7.6 0.0053 17.0 0.0 4.7 3 2 0 4 4 4 2 ABC transporter AAA_27 PF13514.1 gi|302348755|ref|YP_003816393.1| - 2.6e-07 28.8 65.8 0.00012 19.9 11.6 4.4 2 1 2 5 5 5 4 AAA domain NPV_P10 PF05531.7 gi|302348755|ref|YP_003816393.1| - 8.7e-07 29.0 18.3 0.82 9.9 1.2 7.5 3 2 3 7 7 7 2 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|302348755|ref|YP_003816393.1| - 1.7e-06 27.8 19.8 0.68 9.7 0.3 6.2 3 2 2 6 6 6 4 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.6 gi|302348755|ref|YP_003816393.1| - 6.7e-06 24.9 52.6 0.021 13.5 5.0 4.6 4 1 0 4 4 4 4 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|302348755|ref|YP_003816393.1| - 8.8e-06 25.1 25.9 0.39 9.8 2.2 5.2 1 1 3 5 5 5 3 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|302348755|ref|YP_003816393.1| - 1e-05 25.4 74.6 0.13 12.0 10.3 6.5 3 2 2 6 6 6 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_29 PF13555.1 gi|302348755|ref|YP_003816393.1| - 0.00025 20.4 0.0 0.00051 19.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain TBPIP PF07106.8 gi|302348755|ref|YP_003816393.1| - 0.00029 20.4 40.2 0.059 12.9 3.4 5.6 3 1 3 6 6 6 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IncA PF04156.9 gi|302348755|ref|YP_003816393.1| - 0.00067 19.2 76.8 0.013 15.1 9.4 6.2 2 2 1 3 3 2 1 IncA protein Phage_GP20 PF06810.6 gi|302348755|ref|YP_003816393.1| - 0.00094 18.6 36.9 0.0021 17.5 1.6 5.8 3 2 3 7 7 7 2 Phage minor structural protein GP20 ALIX_LYPXL_bnd PF13949.1 gi|302348755|ref|YP_003816393.1| - 0.0021 17.0 20.6 0.0021 17.0 14.3 4.3 1 1 1 3 3 3 1 ALIX V-shaped domain binding to HIV BLOC1_2 PF10046.4 gi|302348755|ref|YP_003816393.1| - 0.0025 17.9 37.4 0.58 10.3 1.4 8.0 4 3 3 8 8 8 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Filament PF00038.16 gi|302348755|ref|YP_003816393.1| - 0.0031 17.0 55.5 0.037 13.5 7.0 5.3 3 2 1 5 5 5 2 Intermediate filament protein Nup54 PF13874.1 gi|302348755|ref|YP_003816393.1| - 0.0036 16.9 5.8 0.0036 16.9 4.0 6.3 3 2 4 7 7 7 2 Nucleoporin complex subunit 54 Allexi_40kDa PF05549.6 gi|302348755|ref|YP_003816393.1| - 0.0067 15.7 16.3 0.59 9.3 0.3 4.9 3 1 1 5 5 5 1 Allexivirus 40kDa protein GAS PF13851.1 gi|302348755|ref|YP_003816393.1| - 0.018 14.2 57.7 0.07 12.3 6.0 5.9 3 2 2 5 5 5 0 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.17 gi|302348755|ref|YP_003816393.1| - 0.024 14.6 57.6 0.24 11.4 4.5 7.3 3 2 3 6 6 6 0 Seryl-tRNA synthetase N-terminal domain DUF2730 PF10805.3 gi|302348755|ref|YP_003816393.1| - 0.024 14.3 24.6 1.3 8.7 0.2 5.9 4 1 0 5 5 5 0 Protein of unknown function (DUF2730) DASH_Dam1 PF08653.5 gi|302348755|ref|YP_003816393.1| - 0.032 13.9 2.6 5.4 6.8 0.1 4.9 4 0 0 4 4 4 0 DASH complex subunit Dam1 DNA_ligase_ZBD PF03119.11 gi|302348755|ref|YP_003816393.1| - 0.062 13.0 1.1 0.21 11.3 0.8 2.0 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3584 PF12128.3 gi|302348755|ref|YP_003816393.1| - 0.082 10.2 52.2 2.8 5.1 12.1 4.4 3 2 0 3 3 3 0 Protein of unknown function (DUF3584) DUF1664 PF07889.7 gi|302348755|ref|YP_003816393.1| - 0.09 12.5 27.9 0.4 10.4 1.9 6.2 4 2 2 6 6 6 0 Protein of unknown function (DUF1664) DUF342 PF03961.8 gi|302348755|ref|YP_003816393.1| - 0.14 10.5 43.9 0.17 10.2 2.9 5.6 1 1 5 7 7 7 0 Protein of unknown function (DUF342) Prominin PF05478.6 gi|302348755|ref|YP_003816393.1| - 0.26 8.7 21.9 0.11 9.9 2.9 3.4 2 1 0 3 3 3 0 Prominin DUF948 PF06103.6 gi|302348755|ref|YP_003816393.1| - 0.42 10.5 18.4 21 5.0 0.0 6.7 4 4 2 6 6 6 0 Bacterial protein of unknown function (DUF948) FlxA PF14282.1 gi|302348755|ref|YP_003816393.1| - 0.46 10.4 28.1 1.2 9.1 2.6 5.7 4 3 0 4 4 4 0 FlxA-like protein WEMBL PF05701.6 gi|302348755|ref|YP_003816393.1| - 0.59 8.5 75.7 0.26 9.6 10.1 3.9 2 2 2 4 4 4 0 Weak chloroplast movement under blue light ATG16 PF08614.6 gi|302348755|ref|YP_003816393.1| - 0.67 9.7 58.9 0.071 12.9 2.2 4.7 3 2 1 4 4 4 0 Autophagy protein 16 (ATG16) DUF972 PF06156.8 gi|302348755|ref|YP_003816393.1| - 1.1 9.6 45.7 0.61 10.4 1.1 7.2 3 3 4 7 7 7 0 Protein of unknown function (DUF972) DivIC PF04977.10 gi|302348755|ref|YP_003816393.1| - 1.2 8.6 47.6 0.75 9.3 0.2 8.5 4 3 3 8 8 8 0 Septum formation initiator NAS PF03059.11 gi|302348755|ref|YP_003816393.1| - 2 7.4 10.4 3.6 6.6 0.9 4.0 5 0 0 5 5 4 0 Nicotianamine synthase protein TPR_MLP1_2 PF07926.7 gi|302348755|ref|YP_003816393.1| - 2.7 7.7 58.7 0.58 9.8 9.1 5.9 3 1 2 5 5 5 0 TPR/MLP1/MLP2-like protein LXG PF04740.7 gi|302348755|ref|YP_003816393.1| - 3.3 7.4 21.6 6 6.6 0.2 5.6 3 2 3 6 6 6 0 LXG domain of WXG superfamily DUF489 PF04356.7 gi|302348755|ref|YP_003816393.1| - 5.5 6.5 16.1 0.58 9.7 0.4 4.6 2 2 3 5 5 5 0 Protein of unknown function (DUF489) Metallophos_2 PF12850.2 gi|302348756|ref|YP_003816394.1| - 3.8e-10 39.8 0.0 5.4e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|302348756|ref|YP_003816394.1| - 9.8e-07 28.3 0.2 7.4e-06 25.4 0.1 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase OMPdecase PF00215.19 gi|302348757|ref|YP_003816395.1| - 4.2e-24 85.1 3.6 5.7e-24 84.7 2.5 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|302348757|ref|YP_003816395.1| - 2.2e-05 23.6 0.7 5.6e-05 22.3 0.5 1.7 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.16 gi|302348757|ref|YP_003816395.1| - 0.00015 21.0 0.4 0.00033 19.9 0.2 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|302348757|ref|YP_003816395.1| - 0.001 18.3 1.3 0.005 16.1 0.2 2.0 2 0 0 2 2 2 1 PcrB family QRPTase_C PF01729.14 gi|302348757|ref|YP_003816395.1| - 0.0012 18.4 1.1 0.0035 16.8 0.7 1.8 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain ThiG PF05690.9 gi|302348757|ref|YP_003816395.1| - 0.0022 17.1 5.1 0.0022 17.1 3.5 2.0 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|302348757|ref|YP_003816395.1| - 0.0022 17.1 0.1 0.0044 16.0 0.0 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|302348757|ref|YP_003816395.1| - 0.0025 16.4 0.8 0.0034 15.9 0.6 1.4 1 1 0 1 1 1 1 Tryptophan synthase alpha chain PEP_mutase PF13714.1 gi|302348757|ref|YP_003816395.1| - 0.0026 17.0 2.5 0.084 12.0 0.5 2.1 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase DUF556 PF04476.8 gi|302348757|ref|YP_003816395.1| - 0.029 13.5 3.7 0.026 13.7 1.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF556) TMP-TENI PF02581.12 gi|302348757|ref|YP_003816395.1| - 0.031 13.4 1.0 0.031 13.4 0.7 1.7 1 1 1 2 2 2 0 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|302348757|ref|YP_003816395.1| - 0.046 12.5 1.5 0.17 10.6 0.3 2.0 1 1 1 2 2 2 0 FMN-dependent dehydrogenase Oxidored_FMN PF00724.15 gi|302348757|ref|YP_003816395.1| - 0.13 11.2 0.0 0.19 10.6 0.0 1.3 1 1 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family DUF561 PF04481.7 gi|302348757|ref|YP_003816395.1| - 0.2 10.5 0.7 0.36 9.7 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) TIM-br_sig_trns PF09370.5 gi|302348757|ref|YP_003816395.1| - 0.23 10.5 3.3 1.4 7.8 0.1 2.7 1 1 2 3 3 3 0 TIM-barrel signal transduction protein Lactamase_B PF00753.22 gi|302348759|ref|YP_003816397.1| - 3.7e-07 29.9 0.8 1.4e-06 28.1 0.5 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|302348759|ref|YP_003816397.1| - 0.00016 21.3 0.0 0.00047 19.7 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain USP7_C2 PF14533.1 gi|302348759|ref|YP_003816397.1| - 0.092 12.1 0.1 0.21 10.9 0.0 1.5 2 0 0 2 2 2 0 Ubiquitin-specific protease C-terminal tRNA_anti-codon PF01336.20 gi|302348760|ref|YP_003816398.1| - 3.9e-08 33.0 0.2 5.2e-08 32.6 0.2 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain ParBc PF02195.13 gi|302348761|ref|YP_003816399.1| - 2.3e-09 37.2 0.9 3.5e-09 36.6 0.0 1.7 2 0 0 2 2 2 1 ParB-like nuclease domain CBS PF00571.23 gi|302348762|ref|YP_003816400.1| - 7e-33 112.1 3.5 1.1e-15 57.1 1.3 2.1 2 0 0 2 2 2 2 CBS domain DUF512 PF04459.7 gi|302348762|ref|YP_003816400.1| - 0.11 11.5 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF512) Mut7-C PF01927.11 gi|302348763|ref|YP_003816401.1| - 3.1e-44 150.5 0.0 3.7e-44 150.2 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain UPF0278 PF08745.6 gi|302348763|ref|YP_003816401.1| - 0.029 13.6 0.0 0.04 13.1 0.0 1.2 1 0 0 1 1 1 0 UPF0278 family PIN PF01850.16 gi|302348763|ref|YP_003816401.1| - 0.038 14.3 0.0 0.068 13.5 0.0 1.4 1 0 0 1 1 1 0 PIN domain TF_Zn_Ribbon PF08271.7 gi|302348763|ref|YP_003816401.1| - 0.082 12.2 1.1 6.4 6.1 0.1 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|302348763|ref|YP_003816401.1| - 0.12 12.7 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar TFIIS_C PF01096.13 gi|302348763|ref|YP_003816401.1| - 6.9 6.3 7.0 0.34 10.5 0.9 1.7 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PAP2 PF01569.16 gi|302348764|ref|YP_003816402.1| - 2.2e-19 69.4 5.6 2.2e-19 69.4 3.9 1.8 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|302348764|ref|YP_003816402.1| - 0.00077 19.6 3.6 0.00077 19.6 2.5 2.3 2 0 0 2 2 2 1 PAP2 superfamily C-terminal PAP2_3 PF14378.1 gi|302348764|ref|YP_003816402.1| - 0.00087 18.8 8.6 0.0051 16.3 5.9 2.1 1 1 0 1 1 1 1 PAP2 superfamily TRAM1 PF08390.6 gi|302348764|ref|YP_003816402.1| - 2.6 7.6 6.5 0.76 9.3 0.3 2.4 2 0 0 2 2 2 0 TRAM1-like protein DHO_dh PF01180.16 gi|302348765|ref|YP_003816403.1| - 6.8e-52 176.2 0.0 7.9e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|302348765|ref|YP_003816403.1| - 1.4e-08 33.9 1.4 6.4e-07 28.4 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|302348765|ref|YP_003816403.1| - 0.00015 21.1 0.6 0.13 11.5 0.0 2.4 2 0 0 2 2 2 2 Histidine biosynthesis protein DUF561 PF04481.7 gi|302348765|ref|YP_003816403.1| - 0.0081 15.1 1.9 0.1 11.5 0.1 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF561) IMPDH PF00478.20 gi|302348765|ref|YP_003816403.1| - 0.014 14.2 1.9 0.038 12.8 0.1 2.2 2 1 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain SOR_SNZ PF01680.12 gi|302348765|ref|YP_003816403.1| - 0.031 13.8 1.5 0.065 12.8 1.1 1.4 1 0 0 1 1 1 0 SOR/SNZ family FMN_dh PF01070.13 gi|302348765|ref|YP_003816403.1| - 0.054 12.3 4.9 0.5 9.1 2.2 2.8 1 1 1 2 2 2 0 FMN-dependent dehydrogenase G3P_antiterm PF04309.7 gi|302348765|ref|YP_003816403.1| - 0.085 11.8 0.5 2.9 6.8 0.0 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator NMO PF03060.10 gi|302348765|ref|YP_003816403.1| - 0.45 9.5 13.0 1.1 8.2 0.9 3.0 3 0 0 3 3 3 0 Nitronate monooxygenase Amidohydro_4 PF13147.1 gi|302348766|ref|YP_003816404.1| - 8.6e-25 88.3 0.1 2.7e-24 86.6 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|302348766|ref|YP_003816404.1| - 3.4e-18 66.4 0.0 3.1e-17 63.2 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|302348766|ref|YP_003816404.1| - 4.9e-10 39.1 0.0 7.7e-07 28.6 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|302348766|ref|YP_003816404.1| - 2.4e-08 33.6 0.0 4.5e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Amidohydrolase DUF3733 PF12534.3 gi|302348766|ref|YP_003816404.1| - 0.11 11.8 0.1 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Leucine-rich repeat containing protein 8 PyrI PF01948.13 gi|302348767|ref|YP_003816405.1| - 3e-34 116.9 1.5 3.7e-34 116.6 1.0 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|302348767|ref|YP_003816405.1| - 1.2e-19 69.4 0.0 1.9e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|302348768|ref|YP_003816406.1| - 4.4e-46 156.0 0.0 5.8e-46 155.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|302348768|ref|YP_003816406.1| - 2.8e-32 111.7 0.0 5e-32 110.9 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain B12-binding PF02310.14 gi|302348768|ref|YP_003816406.1| - 0.1 12.4 0.2 1.7 8.4 0.1 2.7 2 1 0 2 2 2 0 B12 binding domain Pribosyltran PF00156.22 gi|302348769|ref|YP_003816407.1| - 1.1e-15 57.4 0.4 2.6e-15 56.2 0.3 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain Ost4 PF10215.4 gi|302348769|ref|YP_003816407.1| - 0.011 15.1 0.0 0.029 13.8 0.0 1.7 1 0 0 1 1 1 0 Oligosaccaryltransferase UPF0278 PF08745.6 gi|302348769|ref|YP_003816407.1| - 0.076 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 UPF0278 family UPRTase PF14681.1 gi|302348769|ref|YP_003816407.1| - 0.094 11.9 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase OMPdecase PF00215.19 gi|302348770|ref|YP_003816408.1| - 1.8e-30 106.0 0.0 2.1e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Epimerase PF01370.16 gi|302348771|ref|YP_003816409.1| - 8e-14 51.6 0.0 1.4e-13 50.8 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|302348771|ref|YP_003816409.1| - 3.1e-11 42.6 0.1 4.9e-10 38.7 0.1 2.1 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|302348771|ref|YP_003816409.1| - 3.1e-10 39.2 0.0 4.4e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|302348771|ref|YP_003816409.1| - 5.5e-08 33.0 0.1 9.4e-08 32.2 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|302348771|ref|YP_003816409.1| - 0.00074 18.4 0.1 0.0022 16.9 0.1 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain TrkA_N PF02254.13 gi|302348771|ref|YP_003816409.1| - 0.0034 17.3 0.0 0.037 14.0 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain Pyr_redox PF00070.22 gi|302348771|ref|YP_003816409.1| - 0.019 15.3 0.3 0.044 14.1 0.2 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase MR_MLE_N PF02746.11 gi|302348772|ref|YP_003816410.1| - 2.6e-15 56.4 0.0 6.9e-15 55.0 0.0 1.7 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE_C PF13378.1 gi|302348772|ref|YP_003816410.1| - 3e-15 56.1 0.0 5.5e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|302348772|ref|YP_003816410.1| - 1.2e-12 48.1 0.1 2.6e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Enolase_N PF03952.11 gi|302348772|ref|YP_003816410.1| - 0.02 14.8 0.0 2.4 8.1 0.0 2.7 2 1 0 2 2 2 0 Enolase, N-terminal domain Aldo_ket_red PF00248.16 gi|302348774|ref|YP_003816412.1| - 5.8e-56 189.3 0.0 6.6e-56 189.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Pyridoxal_deC PF00282.14 gi|302348775|ref|YP_003816413.1| - 4.5e-28 97.7 0.0 1.6e-27 95.9 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|302348775|ref|YP_003816413.1| - 1.5e-08 33.8 0.0 1.8e-07 30.2 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|302348775|ref|YP_003816413.1| - 5.5e-06 25.5 0.0 0.056 12.3 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|302348775|ref|YP_003816413.1| - 0.00055 19.1 0.0 0.00085 18.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|302348775|ref|YP_003816413.1| - 0.1 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Malic_M PF03949.10 gi|302348776|ref|YP_003816414.1| - 2.3e-62 210.8 0.2 2.8e-62 210.5 0.2 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|302348776|ref|YP_003816414.1| - 4e-22 78.6 0.1 3.8e-15 55.9 0.0 2.7 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Transp_cyt_pur PF02133.10 gi|302348777|ref|YP_003816415.1| - 3.1e-64 217.1 51.9 4.6e-64 216.6 36.0 1.3 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin Cupin_2 PF07883.6 gi|302348778|ref|YP_003816416.1| - 9.6e-18 63.4 0.1 1.3e-17 63.0 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|302348778|ref|YP_003816416.1| - 1.7e-08 34.2 0.0 2.5e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|302348778|ref|YP_003816416.1| - 3.9e-06 26.3 0.0 5.2e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|302348778|ref|YP_003816416.1| - 6.5e-05 22.5 0.0 8.2e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|302348778|ref|YP_003816416.1| - 0.002 17.4 0.1 0.0038 16.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|302348778|ref|YP_003816416.1| - 0.0021 17.9 0.0 0.0029 17.5 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_7 PF12973.2 gi|302348778|ref|YP_003816416.1| - 0.011 15.5 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain EutQ PF06249.7 gi|302348778|ref|YP_003816416.1| - 0.041 13.4 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Ectoine_synth PF06339.7 gi|302348778|ref|YP_003816416.1| - 0.12 12.2 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase Shisa PF13908.1 gi|302348779|ref|YP_003816417.1| - 0.12 12.5 1.8 0.21 11.7 1.2 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator ERGIC_N PF13850.1 gi|302348779|ref|YP_003816417.1| - 1.2 9.1 4.1 3.1 7.8 2.8 1.8 1 1 0 1 1 1 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) Sigma_reg_N PF13800.1 gi|302348779|ref|YP_003816417.1| - 1.3 9.1 6.3 8.7 6.4 3.5 2.4 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Mucin PF01456.12 gi|302348779|ref|YP_003816417.1| - 8.1 6.2 26.1 15 5.3 18.1 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein BPD_transp_1 PF00528.17 gi|302348780|ref|YP_003816418.1| - 6.7e-08 32.2 35.8 5.1e-06 26.1 24.8 2.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|302348781|ref|YP_003816419.1| - 2.1e-19 69.7 18.3 2.1e-19 69.7 12.7 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|302348782|ref|YP_003816420.1| - 2.3e-30 105.6 0.0 3.6e-30 105.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302348782|ref|YP_003816420.1| - 5.3e-06 26.6 0.0 0.001 19.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|302348782|ref|YP_003816420.1| - 0.0034 16.8 0.0 0.88 8.9 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SbcCD_C PF13558.1 gi|302348782|ref|YP_003816420.1| - 0.0035 17.2 0.1 0.011 15.6 0.1 1.8 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|302348782|ref|YP_003816420.1| - 0.03 13.3 0.0 0.056 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain KaiC PF06745.8 gi|302348782|ref|YP_003816420.1| - 0.03 13.4 0.2 4.2 6.4 0.0 2.3 2 0 0 2 2 2 0 KaiC AAA_17 PF13207.1 gi|302348782|ref|YP_003816420.1| - 0.085 13.6 0.1 0.22 12.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|302348782|ref|YP_003816420.1| - 0.14 12.1 0.7 0.83 9.6 0.5 2.0 1 1 0 1 1 1 0 AAA ATPase domain KaiC PF06745.8 gi|302348783|ref|YP_003816421.1| - 3.7e-84 281.3 0.1 4.6e-84 281.0 0.1 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|302348783|ref|YP_003816421.1| - 3.6e-12 46.0 0.0 5.7e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|302348783|ref|YP_003816421.1| - 1.4e-05 23.6 0.1 1.8e-05 23.2 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.1 gi|302348783|ref|YP_003816421.1| - 0.00024 20.9 0.0 0.00049 20.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|302348783|ref|YP_003816421.1| - 0.0034 16.4 0.2 0.0061 15.5 0.1 1.6 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|302348783|ref|YP_003816421.1| - 0.0034 17.5 0.0 0.0096 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|302348783|ref|YP_003816421.1| - 0.0058 16.3 0.1 0.025 14.3 0.1 2.0 2 0 0 2 2 2 1 Part of AAA domain N6_N4_Mtase PF01555.13 gi|302348783|ref|YP_003816421.1| - 0.017 14.6 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 DNA methylase AAA_18 PF13238.1 gi|302348783|ref|YP_003816421.1| - 0.029 14.6 0.1 0.15 12.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|302348783|ref|YP_003816421.1| - 0.03 13.8 0.0 0.76 9.2 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family ASCH PF04266.9 gi|302348784|ref|YP_003816422.1| - 2.4e-16 60.0 0.0 3.7e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 ASCH domain Pro-kuma_activ PF09286.6 gi|302348785|ref|YP_003816423.1| - 1.6e-20 73.5 0.0 3.1e-20 72.6 0.0 1.4 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.17 gi|302348785|ref|YP_003816423.1| - 3.1e-07 29.8 0.9 5.7e-07 28.9 0.6 1.3 1 0 0 1 1 1 1 Subtilase family Thioredoxin PF00085.15 gi|302348787|ref|YP_003816425.1| - 5.5e-26 90.2 0.0 8.7e-26 89.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|302348787|ref|YP_003816425.1| - 3.2e-08 33.7 0.1 4.8e-07 29.9 0.1 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|302348787|ref|YP_003816425.1| - 1e-05 25.5 0.1 2.7e-05 24.1 0.0 1.8 2 1 0 2 2 2 1 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|302348787|ref|YP_003816425.1| - 0.0011 18.4 0.7 0.0021 17.6 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin Redoxin PF08534.5 gi|302348787|ref|YP_003816425.1| - 0.0019 17.7 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_3 PF13192.1 gi|302348787|ref|YP_003816425.1| - 0.0031 17.2 0.0 0.005 16.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.1 gi|302348787|ref|YP_003816425.1| - 0.0098 15.8 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like AdoMet_dc PF02675.10 gi|302348788|ref|YP_003816426.1| - 1.4e-30 105.3 0.0 1.7e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase UPF0122 PF04297.9 gi|302348788|ref|YP_003816426.1| - 0.081 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Lactamase_B PF00753.22 gi|302348789|ref|YP_003816427.1| - 1e-08 35.0 0.0 2.1e-08 34.0 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|302348789|ref|YP_003816427.1| - 5.9e-07 29.2 0.0 1.2e-06 28.1 0.0 1.6 1 1 1 2 2 2 1 Beta-lactamase superfamily domain PTH2 PF01981.11 gi|302348790|ref|YP_003816428.1| - 7e-45 151.4 0.1 7.8e-45 151.3 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF2396 PF09654.5 gi|302348790|ref|YP_003816428.1| - 0.11 12.4 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) PNP_UDP_1 PF01048.15 gi|302348792|ref|YP_003816430.1| - 1.3e-46 158.4 0.1 1.6e-46 158.2 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily MoCF_biosynth PF00994.19 gi|302348793|ref|YP_003816431.1| - 2.7e-30 104.6 0.0 3e-30 104.5 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain GATase PF00117.23 gi|302348793|ref|YP_003816431.1| - 0.031 13.7 0.1 0.064 12.6 0.0 1.4 2 0 0 2 2 2 0 Glutamine amidotransferase class-I TP_methylase PF00590.15 gi|302348793|ref|YP_003816431.1| - 0.12 12.0 0.4 2.9 7.5 0.1 2.0 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases AMP-binding PF00501.23 gi|302348795|ref|YP_003816433.1| - 7.2e-75 251.9 0.0 9.2e-75 251.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|302348795|ref|YP_003816433.1| - 8.1e-23 81.1 0.9 2.1e-22 79.8 0.6 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PALP PF00291.20 gi|302348796|ref|YP_003816434.1| - 2.9e-21 76.0 0.1 1.1e-19 70.8 0.1 2.8 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PadR PF03551.9 gi|302348796|ref|YP_003816434.1| - 0.037 13.7 0.1 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF2258 PF10015.4 gi|302348797|ref|YP_003816435.1| - 8e-26 89.6 1.4 8e-26 89.6 0.9 1.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) Filament PF00038.16 gi|302348797|ref|YP_003816435.1| - 0.00037 20.0 1.3 0.00059 19.3 0.9 1.4 1 0 0 1 1 1 1 Intermediate filament protein Chibby PF14645.1 gi|302348797|ref|YP_003816435.1| - 0.0013 18.5 0.3 0.0019 18.0 0.2 1.2 1 0 0 1 1 1 1 Chibby family bZIP_1 PF00170.16 gi|302348797|ref|YP_003816435.1| - 0.0024 17.7 6.1 0.0064 16.4 4.2 1.7 1 0 0 1 1 1 1 bZIP transcription factor Kinetocho_Slk19 PF12709.2 gi|302348797|ref|YP_003816435.1| - 0.0035 17.3 4.1 0.15 12.1 1.9 2.5 2 0 0 2 2 2 1 Central kinetochore-associated RTBV_P46 PF06216.6 gi|302348797|ref|YP_003816435.1| - 0.0093 14.8 1.9 0.01 14.6 1.3 1.1 1 0 0 1 1 1 1 Rice tungro bacilliform virus P46 protein IncA PF04156.9 gi|302348797|ref|YP_003816435.1| - 0.026 14.1 1.4 0.036 13.6 0.9 1.3 1 0 0 1 1 1 0 IncA protein TPR_MLP1_2 PF07926.7 gi|302348797|ref|YP_003816435.1| - 0.045 13.4 4.5 0.095 12.4 3.1 1.5 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein MbeD_MobD PF04899.7 gi|302348797|ref|YP_003816435.1| - 0.08 12.8 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 MbeD/MobD like DUF4362 PF14275.1 gi|302348797|ref|YP_003816435.1| - 0.13 12.3 2.0 0.29 11.2 1.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4362) Spc24 PF08286.6 gi|302348797|ref|YP_003816435.1| - 0.16 11.6 3.8 0.37 10.4 2.6 1.6 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Bacillus_HBL PF05791.6 gi|302348797|ref|YP_003816435.1| - 0.17 11.2 4.0 0.38 10.0 2.8 1.7 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) DUF972 PF06156.8 gi|302348797|ref|YP_003816435.1| - 0.22 11.8 4.9 0.21 11.9 2.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF972) TSC22 PF01166.13 gi|302348797|ref|YP_003816435.1| - 0.35 10.8 4.1 0.73 9.8 2.8 1.6 1 0 0 1 1 1 0 TSC-22/dip/bun family DUF3373 PF11853.3 gi|302348797|ref|YP_003816435.1| - 0.42 9.0 2.0 0.58 8.6 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) V_ATPase_I PF01496.14 gi|302348797|ref|YP_003816435.1| - 1.7 6.4 5.1 1.9 6.2 3.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DivIC PF04977.10 gi|302348797|ref|YP_003816435.1| - 3.5 7.1 8.3 1.1 8.7 3.7 1.7 2 0 0 2 2 2 0 Septum formation initiator FlaC_arch PF05377.6 gi|302348797|ref|YP_003816435.1| - 6 6.8 8.2 1.8 8.5 3.1 2.1 2 1 0 2 2 1 0 Flagella accessory protein C (FlaC) Nitro_FeMo-Co PF02579.12 gi|302348798|ref|YP_003816436.1| - 5.8e-06 26.2 0.1 9.4e-06 25.6 0.0 1.4 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor AdoMet_dc PF02675.10 gi|302348799|ref|YP_003816437.1| - 5.2e-30 103.4 0.0 6e-30 103.2 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase FliT PF05400.8 gi|302348800|ref|YP_003816438.1| - 0.077 13.4 1.3 0.086 13.2 0.9 1.1 1 0 0 1 1 1 0 Flagellar protein FliT Ribosomal_S2 PF00318.15 gi|302348801|ref|YP_003816439.1| - 5e-34 117.3 0.0 2.7e-30 105.1 0.0 2.1 1 1 0 1 1 1 1 Ribosomal protein S2 RNA_pol_N PF01194.12 gi|302348802|ref|YP_003816440.1| - 1.9e-19 69.3 0.1 2.3e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.14 gi|302348803|ref|YP_003816441.1| - 5.6e-32 110.5 0.1 7e-32 110.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 PDZ PF00595.19 gi|302348803|ref|YP_003816441.1| - 0.033 14.3 0.1 0.055 13.6 0.0 1.3 1 0 0 1 1 1 0 PDZ domain (Also known as DHR or GLGF) Ribosomal_L13 PF00572.13 gi|302348804|ref|YP_003816442.1| - 4.1e-26 91.5 0.0 5.3e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Cytidylate_kin2 PF13189.1 gi|302348804|ref|YP_003816442.1| - 0.092 12.6 0.1 1.4 8.7 0.1 2.1 1 1 0 1 1 1 0 Cytidylate kinase-like family Ribosomal_L18e PF00828.14 gi|302348805|ref|YP_003816443.1| - 2e-14 54.0 0.1 2.9e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|302348806|ref|YP_003816444.1| - 5.7e-25 87.6 0.0 1.7e-24 86.1 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|302348806|ref|YP_003816444.1| - 6.7e-13 47.5 0.0 8.5e-13 47.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.14 gi|302348807|ref|YP_003816445.1| - 4.5e-43 145.8 0.4 5.3e-43 145.6 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|302348808|ref|YP_003816446.1| - 2.6e-18 65.1 0.8 6.2e-18 63.9 0.1 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|302348808|ref|YP_003816446.1| - 0.00026 21.2 0.2 0.00078 19.7 0.0 1.9 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.17 gi|302348809|ref|YP_003816447.1| - 4.2e-30 104.3 0.1 5.1e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_4 PF14490.1 gi|302348809|ref|YP_003816447.1| - 0.035 13.8 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain HHH_6 PF14579.1 gi|302348809|ref|YP_003816447.1| - 0.073 13.1 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif FbpA PF05833.6 gi|302348809|ref|YP_003816447.1| - 0.079 11.4 0.0 0.12 10.8 0.0 1.4 1 1 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_L7Ae PF01248.21 gi|302348810|ref|YP_003816448.1| - 1.4e-30 104.6 0.2 1.9e-30 104.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNase_P_pop3 PF08228.6 gi|302348810|ref|YP_003816448.1| - 0.0011 18.8 0.0 0.0012 18.7 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 PELOTA_1 PF15608.1 gi|302348810|ref|YP_003816448.1| - 0.0092 15.7 0.1 0.013 15.2 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain DUF2325 PF10087.4 gi|302348810|ref|YP_003816448.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) H_PPase PF03030.11 gi|302348811|ref|YP_003816449.1| - 1.5e-233 776.9 44.3 1.8e-233 776.7 30.7 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase DMAP_binding PF06464.6 gi|302348811|ref|YP_003816449.1| - 0.14 12.7 0.0 0.21 12.2 0.0 1.2 1 0 0 1 1 1 0 DMAP1-binding Domain Phage_holin_5 PF06946.6 gi|302348812|ref|YP_003816450.1| - 0.0094 16.0 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 1 Phage holin CitG PF01874.11 gi|302348812|ref|YP_003816450.1| - 0.015 14.5 0.0 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 ATP:dephospho-CoA triphosphoribosyl transferase Aldo_ket_red PF00248.16 gi|302348813|ref|YP_003816451.1| - 1.1e-35 122.8 0.0 1.5e-35 122.4 0.0 1.2 1 0 0 1 1 1 1 Aldo/keto reductase family Phage_holin_4 PF05105.7 gi|302348814|ref|YP_003816452.1| - 3.4 7.3 6.2 79 2.9 4.5 2.3 1 1 0 1 1 1 0 Holin family UNC-93 PF05978.11 gi|302348815|ref|YP_003816453.1| - 0.35 10.3 2.3 0.18 11.2 0.2 1.5 2 0 0 2 2 2 0 Ion channel regulatory protein UNC-93 Radical_SAM PF04055.16 gi|302348817|ref|YP_003816455.1| - 1.4e-21 77.3 0.0 2.3e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|302348817|ref|YP_003816455.1| - 1.1e-18 67.0 0.0 1.6e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|302348817|ref|YP_003816455.1| - 2.3e-05 24.3 0.0 5.2e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|302348817|ref|YP_003816455.1| - 0.0092 16.1 0.0 0.036 14.1 0.0 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Imm34 PF15596.1 gi|302348818|ref|YP_003816456.1| - 0.0012 19.0 0.1 0.0023 18.0 0.1 1.5 1 0 0 1 1 1 1 Immunity protein 34 GTP_EFTU_D2 PF03144.20 gi|302348818|ref|YP_003816456.1| - 0.027 14.5 0.1 0.06 13.4 0.1 1.5 1 0 0 1 1 1 0 Elongation factor Tu domain 2 FAD_binding_5 PF00941.16 gi|302348818|ref|YP_003816456.1| - 0.048 13.0 0.1 0.16 11.4 0.0 1.9 3 0 0 3 3 3 0 FAD binding domain in molybdopterin dehydrogenase DUF4147 PF13660.1 gi|302348819|ref|YP_003816457.1| - 1e-63 214.6 0.0 1.4e-63 214.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|302348819|ref|YP_003816457.1| - 7.4e-32 109.6 0.2 1.7e-31 108.4 0.1 1.7 1 0 0 1 1 1 1 MOFRL family Nol1_Nop2_Fmu PF01189.12 gi|302348820|ref|YP_003816458.1| - 1.5e-32 113.1 0.0 2.9e-32 112.1 0.0 1.4 2 0 0 2 2 2 1 NOL1/NOP2/sun family PUA PF01472.15 gi|302348820|ref|YP_003816458.1| - 1.6e-13 50.1 4.7 2.8e-13 49.3 3.3 1.4 1 0 0 1 1 1 1 PUA domain Methyltransf_26 PF13659.1 gi|302348820|ref|YP_003816458.1| - 9e-10 38.6 0.0 1.5e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|302348820|ref|YP_003816458.1| - 5e-06 27.0 0.0 9.5e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302348820|ref|YP_003816458.1| - 9.9e-06 25.2 0.0 1.6e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|302348820|ref|YP_003816458.1| - 7.4e-05 22.8 0.0 0.0018 18.3 0.0 2.2 2 0 0 2 2 2 1 FtsJ-like methyltransferase MTS PF05175.9 gi|302348820|ref|YP_003816458.1| - 0.011 15.1 0.0 0.027 13.8 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|302348820|ref|YP_003816458.1| - 0.016 14.5 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PCMT PF01135.14 gi|302348820|ref|YP_003816458.1| - 0.053 13.0 0.0 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltrans_SAM PF10672.4 gi|302348820|ref|YP_003816458.1| - 0.056 12.2 0.0 0.12 11.1 0.0 1.5 2 0 0 2 2 2 0 S-adenosylmethionine-dependent methyltransferase Methyltransf_11 PF08241.7 gi|302348820|ref|YP_003816458.1| - 0.067 13.6 0.0 0.43 11.0 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain Cytochrom_D1 PF02239.11 gi|302348820|ref|YP_003816458.1| - 0.12 10.6 0.1 0.18 10.0 0.1 1.2 1 0 0 1 1 1 0 Cytochrome D1 heme domain Met_10 PF02475.11 gi|302348821|ref|YP_003816459.1| - 1.1e-47 162.2 0.0 1.8e-47 161.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.11 gi|302348821|ref|YP_003816459.1| - 2.1e-05 23.6 0.0 2.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|302348821|ref|YP_003816459.1| - 5.2e-05 23.2 0.0 7.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|302348821|ref|YP_003816459.1| - 0.00016 21.0 0.0 0.00023 20.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|302348821|ref|YP_003816459.1| - 0.0003 20.0 0.0 0.0004 19.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|302348821|ref|YP_003816459.1| - 0.00054 19.5 0.0 0.00086 18.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|302348821|ref|YP_003816459.1| - 0.00082 19.9 0.0 0.0014 19.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302348821|ref|YP_003816459.1| - 0.0063 16.1 0.0 0.0081 15.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltrans_SAM PF10672.4 gi|302348821|ref|YP_003816459.1| - 0.0099 14.7 0.0 0.02 13.7 0.0 1.4 2 0 0 2 2 2 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_16 PF10294.4 gi|302348821|ref|YP_003816459.1| - 0.086 12.2 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase DNA_primase_lrg PF04104.9 gi|302348822|ref|YP_003816460.1| - 1.4e-06 27.7 0.0 4.9e-06 26.0 0.0 1.9 2 1 0 2 2 2 1 Eukaryotic and archaeal DNA primase, large subunit MmgE_PrpD PF03972.9 gi|302348823|ref|YP_003816461.1| - 1.6e-126 422.0 0.0 1.9e-126 421.8 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Laminin_II PF06009.7 gi|302348824|ref|YP_003816462.1| - 0.046 13.4 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 Laminin Domain II CTP-dep_RFKase PF01982.11 gi|302348825|ref|YP_003816463.1| - 1.7e-32 111.5 0.0 2.3e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF120 Pyr_redox_2 PF07992.9 gi|302348826|ref|YP_003816464.1| - 7.5e-38 130.4 2.3 8.2e-20 71.5 0.0 3.2 2 1 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|302348826|ref|YP_003816464.1| - 9.6e-27 93.2 2.1 1e-19 70.7 0.5 3.4 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|302348826|ref|YP_003816464.1| - 5.2e-20 71.6 2.3 7.5e-07 28.3 0.0 4.1 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|302348826|ref|YP_003816464.1| - 1.8e-13 51.0 0.4 2.2e-06 27.9 0.0 3.2 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|302348826|ref|YP_003816464.1| - 4.5e-12 45.9 0.0 1.1e-11 44.7 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.9 gi|302348826|ref|YP_003816464.1| - 2.6e-11 42.6 3.3 0.0027 16.2 0.0 4.1 3 1 1 4 4 4 3 HI0933-like protein FAD_binding_2 PF00890.19 gi|302348826|ref|YP_003816464.1| - 2.2e-08 33.4 4.3 0.00099 18.0 0.0 3.7 2 1 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.1 gi|302348826|ref|YP_003816464.1| - 5.5e-08 32.7 0.0 0.012 15.5 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|302348826|ref|YP_003816464.1| - 5.9e-07 28.7 1.9 0.02 13.8 0.0 3.2 3 0 0 3 3 3 2 Lycopene cyclase protein K_oxygenase PF13434.1 gi|302348826|ref|YP_003816464.1| - 1.7e-06 27.2 0.0 1.5e-05 24.0 0.0 2.2 2 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|302348826|ref|YP_003816464.1| - 1.9e-05 24.3 0.5 0.19 11.3 0.1 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|302348826|ref|YP_003816464.1| - 2e-05 23.6 1.7 0.065 12.0 0.2 3.2 3 1 1 4 4 4 2 Glucose inhibited division protein A TrkA_N PF02254.13 gi|302348826|ref|YP_003816464.1| - 3.7e-05 23.7 0.4 0.13 12.2 0.1 2.6 2 1 0 2 2 2 2 TrkA-N domain Thi4 PF01946.12 gi|302348826|ref|YP_003816464.1| - 9.7e-05 21.5 0.6 0.047 12.7 0.1 2.7 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.1 gi|302348826|ref|YP_003816464.1| - 0.00015 21.9 0.2 0.025 14.8 0.1 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|302348826|ref|YP_003816464.1| - 0.00022 20.6 0.1 0.0034 16.7 0.1 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|302348826|ref|YP_003816464.1| - 0.0004 19.5 0.2 0.15 11.0 0.2 3.0 3 0 0 3 3 3 1 FAD binding domain NAD_binding_9 PF13454.1 gi|302348826|ref|YP_003816464.1| - 0.00047 19.9 0.2 8.8 6.0 0.0 3.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|302348826|ref|YP_003816464.1| - 0.0021 17.2 0.1 0.34 10.0 0.0 2.6 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|302348826|ref|YP_003816464.1| - 0.0031 17.1 0.8 0.0085 15.7 0.1 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|302348826|ref|YP_003816464.1| - 0.01 14.9 2.1 0.55 9.2 0.0 2.8 2 1 0 2 2 2 0 FAD dependent oxidoreductase ThiF PF00899.16 gi|302348826|ref|YP_003816464.1| - 0.014 15.1 0.8 0.43 10.4 0.2 2.4 2 0 0 2 2 2 0 ThiF family NAD_binding_2 PF03446.10 gi|302348826|ref|YP_003816464.1| - 0.032 14.0 0.2 0.12 12.1 0.1 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|302348826|ref|YP_003816464.1| - 0.049 13.7 0.7 0.68 10.0 0.1 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|302348826|ref|YP_003816464.1| - 0.068 13.5 1.4 14 6.2 0.2 2.9 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent tRNA_deacylase PF04414.7 gi|302348828|ref|YP_003816466.1| - 2.3e-59 200.0 0.0 2.8e-59 199.8 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase ECH PF00378.15 gi|302348829|ref|YP_003816467.1| - 8.4e-72 241.2 0.1 1.8e-71 240.1 0.0 1.6 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase family 3HCDH_N PF02737.13 gi|302348829|ref|YP_003816467.1| - 2.3e-61 206.5 0.6 4.8e-61 205.5 0.4 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|302348829|ref|YP_003816467.1| - 1.5e-53 179.1 0.2 5.8e-28 97.1 0.0 3.0 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|302348829|ref|YP_003816467.1| - 0.00011 22.0 1.3 0.00059 19.7 0.9 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.1 gi|302348829|ref|YP_003816467.1| - 0.021 15.0 0.2 0.049 13.9 0.2 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|302348829|ref|YP_003816467.1| - 0.033 14.5 0.4 0.14 12.5 0.0 2.3 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|302348829|ref|YP_003816467.1| - 0.036 14.1 0.1 0.12 12.5 0.1 1.9 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|302348829|ref|YP_003816467.1| - 0.042 13.5 0.4 0.21 11.3 0.3 2.2 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ECH_C PF13766.1 gi|302348829|ref|YP_003816467.1| - 0.065 13.3 0.0 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region 2-Hacid_dh_C PF02826.14 gi|302348829|ref|YP_003816467.1| - 0.071 12.2 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|302348829|ref|YP_003816467.1| - 0.8 9.5 3.4 2.5 7.9 2.4 1.9 1 1 0 1 1 1 0 ThiF family DapB_N PF01113.15 gi|302348829|ref|YP_003816467.1| - 0.97 9.3 4.0 89 3.0 2.6 3.2 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus DUF3078 PF11276.3 gi|302348830|ref|YP_003816468.1| - 0.061 13.5 0.2 0.069 13.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3078) DUF1533 PF07550.6 gi|302348830|ref|YP_003816468.1| - 0.066 13.2 0.2 1.2 9.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1533) Cren7 PF11520.3 gi|302348831|ref|YP_003816469.1| - 2.8e-27 94.1 1.4 2.9e-27 94.0 1.0 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DUF2231 PF09990.4 gi|302348832|ref|YP_003816470.1| - 0.028 14.7 1.7 0.028 14.7 1.2 2.1 2 1 0 2 2 2 0 Predicted membrane protein (DUF2231) DsbD_2 PF13386.1 gi|302348832|ref|YP_003816470.1| - 0.09 12.5 16.4 0.22 11.2 11.4 1.7 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region NicO PF03824.11 gi|302348832|ref|YP_003816470.1| - 2.1 7.6 21.1 0.044 13.0 5.9 2.9 1 1 1 2 2 2 0 High-affinity nickel-transport protein ACP_syn_III_C PF08541.5 gi|302348833|ref|YP_003816471.1| - 5.8e-10 39.0 0.0 2.6e-09 36.9 0.0 2.0 2 1 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|302348833|ref|YP_003816471.1| - 6e-07 29.0 1.3 1e-06 28.3 0.5 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.5 gi|302348833|ref|YP_003816471.1| - 0.00024 20.6 0.0 0.0053 16.2 0.0 2.0 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.18 gi|302348833|ref|YP_003816471.1| - 0.0052 15.8 0.0 0.011 14.7 0.0 1.4 2 0 0 2 2 2 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|302348833|ref|YP_003816471.1| - 0.091 12.6 0.0 11 5.9 0.0 2.7 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|302348834|ref|YP_003816472.1| - 5.5e-08 32.3 0.4 0.00028 20.4 0.1 2.5 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_C PF02803.13 gi|302348834|ref|YP_003816472.1| - 6.3e-07 28.8 1.3 8.2e-07 28.4 0.1 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|302348834|ref|YP_003816472.1| - 2.2e-05 24.0 0.2 0.00011 21.8 0.1 2.1 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Chal_sti_synt_N PF00195.14 gi|302348834|ref|YP_003816472.1| - 0.00077 18.7 0.2 0.0021 17.3 0.0 1.7 2 0 0 2 2 2 1 Chalcone and stilbene synthases, N-terminal domain Thiolase_N PF00108.18 gi|302348834|ref|YP_003816472.1| - 0.012 14.5 0.2 0.056 12.4 0.0 1.9 2 0 0 2 2 2 0 Thiolase, N-terminal domain DUF35_N PF12172.3 gi|302348835|ref|YP_003816473.1| - 5.9e-11 41.9 3.5 5.9e-11 41.9 2.4 1.5 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|302348835|ref|YP_003816473.1| - 1.9e-10 40.7 0.1 2.7e-10 40.3 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DZR PF12773.2 gi|302348835|ref|YP_003816473.1| - 0.0075 16.0 1.2 0.011 15.4 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|302348835|ref|YP_003816473.1| - 0.01 15.1 0.3 0.17 11.2 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|302348835|ref|YP_003816473.1| - 0.059 13.1 3.7 0.22 11.3 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-CHCC PF10276.4 gi|302348835|ref|YP_003816473.1| - 0.41 10.5 2.5 1.4 8.8 0.4 2.2 2 0 0 2 2 2 0 Zinc-finger domain zf-ribbon_3 PF13248.1 gi|302348835|ref|YP_003816473.1| - 0.69 9.1 6.5 2.2 7.5 4.5 1.8 1 1 0 1 1 1 0 zinc-ribbon domain HMG-CoA_red PF00368.13 gi|302348836|ref|YP_003816474.1| - 8.5e-135 449.1 0.0 1e-134 448.9 0.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase NAD_binding_2 PF03446.10 gi|302348837|ref|YP_003816475.1| - 5.1e-36 123.9 0.1 7e-36 123.5 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|302348837|ref|YP_003816475.1| - 1.8e-24 86.1 0.0 2.7e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|302348837|ref|YP_003816475.1| - 9.2e-07 29.2 0.0 2.1e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|302348837|ref|YP_003816475.1| - 7.4e-05 22.8 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|302348837|ref|YP_003816475.1| - 0.00035 21.0 0.0 0.00062 20.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|302348837|ref|YP_003816475.1| - 0.00043 19.4 0.0 0.00078 18.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|302348837|ref|YP_003816475.1| - 0.00054 19.6 0.1 0.00084 19.0 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|302348837|ref|YP_003816475.1| - 0.0028 17.3 0.2 0.0049 16.5 0.1 1.4 1 0 0 1 1 1 1 Rossmann-like domain ApbA PF02558.11 gi|302348837|ref|YP_003816475.1| - 0.0035 16.8 0.3 0.008 15.6 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA TSCPD PF12637.2 gi|302348837|ref|YP_003816475.1| - 0.0089 15.9 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 TSCPD domain UDPG_MGDP_dh_N PF03721.9 gi|302348837|ref|YP_003816475.1| - 0.017 14.4 0.4 3.7 6.8 0.0 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF211 PF02680.9 gi|302348837|ref|YP_003816475.1| - 0.093 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized ArCR, COG1888 Staph_haemo PF05480.6 gi|302348837|ref|YP_003816475.1| - 0.1 12.2 0.0 0.34 10.6 0.0 1.9 2 0 0 2 2 2 0 Staphylococcus haemolytic protein Acyl-CoA_dh_1 PF00441.19 gi|302348840|ref|YP_003816478.1| - 2.1e-30 105.8 2.6 3.2e-30 105.2 1.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|302348840|ref|YP_003816478.1| - 4.4e-25 88.4 0.0 1.3e-24 86.9 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|302348840|ref|YP_003816478.1| - 1.6e-14 54.2 2.3 2.6e-14 53.6 1.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|302348840|ref|YP_003816478.1| - 6.6e-12 44.7 0.1 1.6e-11 43.5 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Fe-ADH PF00465.14 gi|302348841|ref|YP_003816479.1| - 3.4e-80 269.4 0.0 4.2e-80 269.1 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|302348841|ref|YP_003816479.1| - 6e-11 42.1 0.0 3.4e-09 36.3 0.1 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase TLE_N PF03920.10 gi|302348841|ref|YP_003816479.1| - 0.17 11.7 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 Groucho/TLE N-terminal Q-rich domain Elf1 PF05129.8 gi|302348842|ref|YP_003816480.1| - 5.5e-16 58.0 1.7 7.1e-16 57.6 1.2 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|302348842|ref|YP_003816480.1| - 0.027 14.7 0.2 0.027 14.7 0.1 1.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar FdhE PF04216.7 gi|302348842|ref|YP_003816480.1| - 0.051 13.2 0.4 0.06 13.0 0.3 1.3 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-TFIIB PF13453.1 gi|302348842|ref|YP_003816480.1| - 0.066 12.4 0.7 0.066 12.4 0.5 1.7 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|302348842|ref|YP_003816480.1| - 0.071 12.3 0.0 0.071 12.3 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Cytochrome_C554 PF13435.1 gi|302348842|ref|YP_003816480.1| - 0.098 12.7 0.1 0.1 12.6 0.1 1.2 1 1 0 1 1 1 0 Cytochrome c554 and c-prime TF_Zn_Ribbon PF08271.7 gi|302348842|ref|YP_003816480.1| - 0.26 10.6 0.1 0.26 10.6 0.0 2.0 3 0 0 3 3 3 0 TFIIB zinc-binding PcrB PF01884.12 gi|302348843|ref|YP_003816481.1| - 3.7e-63 212.8 0.0 4.8e-63 212.5 0.0 1.0 1 0 0 1 1 1 1 PcrB family NanE PF04131.9 gi|302348843|ref|YP_003816481.1| - 0.00045 19.2 0.1 0.02 13.8 0.0 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|302348843|ref|YP_003816481.1| - 0.00099 18.4 0.0 0.0016 17.7 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.14 gi|302348843|ref|YP_003816481.1| - 0.0025 16.9 0.0 0.0053 15.8 0.0 1.5 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family B12-binding PF02310.14 gi|302348843|ref|YP_003816481.1| - 0.013 15.4 0.0 0.069 13.0 0.0 2.1 2 1 0 2 2 2 0 B12 binding domain MazG PF03819.12 gi|302348844|ref|YP_003816482.1| - 1.4e-11 44.1 0.1 2e-11 43.6 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|302348844|ref|YP_003816482.1| - 0.0013 18.9 0.1 0.0015 18.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Sec61_beta PF03911.11 gi|302348845|ref|YP_003816483.1| - 1.5e-07 31.0 1.4 1.7e-07 30.9 1.0 1.1 1 0 0 1 1 1 1 Sec61beta family DUF3175 PF11373.3 gi|302348845|ref|YP_003816483.1| - 0.06 13.3 0.1 0.075 13.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3175) SWIM PF04434.12 gi|302348846|ref|YP_003816484.1| - 0.0012 18.2 0.0 0.002 17.5 0.0 1.3 1 0 0 1 1 1 1 SWIM zinc finger TP6A_N PF04406.9 gi|302348846|ref|YP_003816484.1| - 0.087 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Type IIB DNA topoisomerase Rib_5-P_isom_A PF06026.9 gi|302348847|ref|YP_003816485.1| - 1.8e-44 151.0 0.0 2.3e-44 150.7 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DUF162 PF02589.10 gi|302348847|ref|YP_003816485.1| - 0.089 12.3 0.1 0.19 11.2 0.1 1.5 1 1 0 1 1 1 0 Uncharacterised ACR, YkgG family COG1556 TatD_DNase PF01026.16 gi|302348848|ref|YP_003816486.1| - 2.6e-12 46.4 0.0 3.1e-12 46.2 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase VWA_2 PF13519.1 gi|302348849|ref|YP_003816487.1| - 4e-15 56.3 0.2 2.5e-14 53.7 0.0 2.1 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|302348849|ref|YP_003816487.1| - 9e-09 34.7 0.0 1.7e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|302348849|ref|YP_003816487.1| - 1.3e-07 31.5 1.2 2.4e-07 30.6 0.1 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|302348849|ref|YP_003816487.1| - 0.00083 19.2 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 vWA found in TerF C terminus Glyco_trans_2_3 PF13632.1 gi|302348849|ref|YP_003816487.1| - 0.13 11.9 0.0 0.47 10.1 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family group 2 AAA_5 PF07728.9 gi|302348850|ref|YP_003816488.1| - 3.5e-27 94.8 0.1 1.9e-26 92.4 0.0 2.2 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|302348850|ref|YP_003816488.1| - 2.4e-06 27.1 0.0 5.1e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|302348850|ref|YP_003816488.1| - 8.9e-05 22.6 0.3 0.00059 20.0 0.0 2.6 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|302348850|ref|YP_003816488.1| - 0.00083 19.5 0.4 0.015 15.3 0.0 3.0 2 2 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|302348850|ref|YP_003816488.1| - 0.002 17.3 0.0 0.0098 15.0 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Exo70 PF03081.10 gi|302348850|ref|YP_003816488.1| - 0.0022 16.8 0.3 0.0036 16.1 0.2 1.2 1 0 0 1 1 1 1 Exo70 exocyst complex subunit AAA_16 PF13191.1 gi|302348850|ref|YP_003816488.1| - 0.0064 16.4 0.0 0.013 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|302348850|ref|YP_003816488.1| - 0.013 14.9 0.0 0.062 12.7 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain Vps53_N PF04100.7 gi|302348850|ref|YP_003816488.1| - 0.045 12.5 6.4 0.069 11.9 4.5 1.2 1 0 0 1 1 1 0 Vps53-like, N-terminal IncA PF04156.9 gi|302348850|ref|YP_003816488.1| - 0.048 13.2 2.5 0.085 12.4 1.7 1.4 1 0 0 1 1 1 0 IncA protein GAT PF03127.9 gi|302348850|ref|YP_003816488.1| - 0.056 13.4 2.1 0.15 12.0 1.4 1.7 1 0 0 1 1 1 0 GAT domain AAA_19 PF13245.1 gi|302348850|ref|YP_003816488.1| - 0.082 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain Baculo_PEP_C PF04513.7 gi|302348850|ref|YP_003816488.1| - 0.21 11.4 3.8 3.1 7.6 0.1 2.1 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Med4 PF10018.4 gi|302348850|ref|YP_003816488.1| - 0.35 10.2 3.3 0.62 9.4 2.3 1.4 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 3HCDH_N PF02737.13 gi|302348850|ref|YP_003816488.1| - 3.1 7.4 7.3 0.83 9.2 0.3 2.2 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Med9 PF07544.8 gi|302348850|ref|YP_003816488.1| - 6.8 6.5 8.7 14 5.5 0.3 2.5 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 TPP_enzyme_C PF02775.16 gi|302348851|ref|YP_003816489.1| - 5.9e-21 74.6 0.3 7.9e-21 74.2 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|302348851|ref|YP_003816489.1| - 1.6e-05 23.9 0.1 2.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|302348851|ref|YP_003816489.1| - 0.061 12.0 1.3 0.084 11.5 0.9 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component POR_N PF01855.14 gi|302348852|ref|YP_003816490.1| - 6.8e-72 241.6 3.8 8.3e-72 241.4 2.6 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|302348852|ref|YP_003816490.1| - 1.5e-09 37.8 0.1 8.3e-09 35.4 0.0 2.2 3 0 0 3 3 3 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|302348852|ref|YP_003816490.1| - 0.0037 16.7 0.8 0.0064 15.9 0.6 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.22 gi|302348853|ref|YP_003816491.1| - 1e-15 56.5 12.2 1e-09 37.6 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|302348853|ref|YP_003816491.1| - 4.3e-11 42.4 19.7 3.1e-07 30.1 7.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|302348853|ref|YP_003816491.1| - 9.7e-11 41.3 6.8 1.2e-10 41.0 4.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|302348853|ref|YP_003816491.1| - 1.6e-09 37.9 8.7 3.5e-09 36.9 6.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|302348853|ref|YP_003816491.1| - 1.8e-09 36.9 11.2 3e-05 23.6 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|302348853|ref|YP_003816491.1| - 6.4e-09 35.2 12.1 3.4e-06 26.6 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|302348853|ref|YP_003816491.1| - 1.8e-08 35.0 6.4 2.7e-06 28.0 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|302348853|ref|YP_003816491.1| - 4.6e-08 33.2 9.7 5.8e-08 32.8 6.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|302348853|ref|YP_003816491.1| - 1.8e-05 25.1 8.1 0.00036 21.0 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|302348853|ref|YP_003816491.1| - 0.00015 22.0 9.5 0.089 13.1 0.2 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|302348853|ref|YP_003816491.1| - 0.00039 20.5 10.9 0.052 13.9 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|302348853|ref|YP_003816491.1| - 0.00044 20.2 9.5 0.0075 16.2 6.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|302348853|ref|YP_003816491.1| - 0.00053 20.2 8.7 0.066 13.5 1.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|302348853|ref|YP_003816491.1| - 0.0017 18.1 4.6 0.0023 17.7 3.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|302348853|ref|YP_003816491.1| - 0.019 15.3 11.3 0.064 13.6 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|302348853|ref|YP_003816491.1| - 0.039 14.5 7.3 0.039 14.5 5.0 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|302348854|ref|YP_003816492.1| - 2.1e-37 128.6 0.0 2.5e-37 128.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF1743 PF08489.6 gi|302348855|ref|YP_003816493.1| - 3.9e-19 68.5 0.0 6e-19 67.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.6 gi|302348855|ref|YP_003816493.1| - 0.0038 16.8 0.8 0.0072 15.9 0.5 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|302348855|ref|YP_003816493.1| - 0.0048 16.3 6.9 0.0087 15.5 4.8 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain tRNA_anti_2 PF13742.1 gi|302348855|ref|YP_003816493.1| - 0.018 14.8 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|302348855|ref|YP_003816493.1| - 0.021 14.7 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain zf-HIT PF04438.11 gi|302348855|ref|YP_003816493.1| - 0.077 12.6 4.2 0.89 9.2 0.3 2.3 2 0 0 2 2 2 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|302348855|ref|YP_003816493.1| - 0.2 11.1 3.6 0.47 9.9 2.5 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin PF00301.15 gi|302348855|ref|YP_003816493.1| - 0.37 10.6 2.7 20 5.1 0.0 2.8 3 0 0 3 3 3 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|302348855|ref|YP_003816493.1| - 0.44 9.8 3.5 5.3 6.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|302348855|ref|YP_003816493.1| - 0.59 9.3 3.7 1.6 8.0 2.5 1.8 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-ISL3 PF14690.1 gi|302348855|ref|YP_003816493.1| - 0.68 10.0 8.3 2.4 8.2 1.1 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|302348855|ref|YP_003816493.1| - 0.8 9.5 7.0 5.2 6.9 4.8 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1610 PF07754.6 gi|302348855|ref|YP_003816493.1| - 0.95 9.6 7.3 2.9 8.0 5.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|302348855|ref|YP_003816493.1| - 1.1 8.7 3.4 8.1 6.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|302348855|ref|YP_003816493.1| - 3.7 7.2 7.9 41 3.9 1.5 2.5 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS MFS_1 PF07690.11 gi|302348856|ref|YP_003816494.1| - 9.4e-12 44.2 48.2 9.4e-12 44.2 33.4 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily DEAD PF00270.24 gi|302348858|ref|YP_003816496.1| - 2.2e-23 82.5 0.0 3.4e-23 81.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|302348858|ref|YP_003816496.1| - 4.3e-21 74.5 0.0 2.1e-18 65.9 0.0 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|302348858|ref|YP_003816496.1| - 2.3e-12 47.3 0.1 6.1e-12 45.9 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.10 gi|302348858|ref|YP_003816496.1| - 9.1e-05 22.3 0.0 0.00015 21.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|302348858|ref|YP_003816496.1| - 0.00028 20.2 0.0 0.00045 19.5 0.0 1.2 1 0 0 1 1 1 1 SecA DEAD-like domain AAA_19 PF13245.1 gi|302348858|ref|YP_003816496.1| - 0.0029 17.3 0.7 0.0079 15.9 0.1 2.1 2 0 0 2 2 2 1 Part of AAA domain YcxB PF14317.1 gi|302348858|ref|YP_003816496.1| - 0.024 13.8 0.0 0.053 12.7 0.0 1.5 1 0 0 1 1 1 0 YcxB-like protein UvrD-helicase PF00580.16 gi|302348858|ref|YP_003816496.1| - 0.072 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Sugar_tr PF00083.19 gi|302348859|ref|YP_003816497.1| - 6e-58 196.5 18.8 7.2e-58 196.2 13.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|302348859|ref|YP_003816497.1| - 2e-31 109.0 41.5 1.7e-29 102.6 22.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF726 PF05277.7 gi|302348859|ref|YP_003816497.1| - 0.66 8.7 4.2 10 4.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF726) dCMP_cyt_deam_1 PF00383.17 gi|302348860|ref|YP_003816498.1| - 5.7e-15 54.8 0.0 6.6e-15 54.6 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|302348860|ref|YP_003816498.1| - 5.9e-11 42.4 0.3 2.1e-10 40.6 0.1 1.8 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|302348860|ref|YP_003816498.1| - 0.0004 19.8 2.0 0.022 14.1 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases MafB19-deam PF14437.1 gi|302348860|ref|YP_003816498.1| - 0.083 12.5 0.0 0.14 11.7 0.0 1.3 1 1 0 1 1 1 0 MafB19-like deaminase Pyr_redox_2 PF07992.9 gi|302348861|ref|YP_003816499.1| - 5.5e-29 101.4 4.6 8.3e-26 91.1 3.2 3.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|302348861|ref|YP_003816499.1| - 2.8e-24 85.2 0.1 3.4e-23 81.7 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|302348861|ref|YP_003816499.1| - 2.5e-21 75.8 4.0 2.2e-20 72.8 0.0 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|302348861|ref|YP_003816499.1| - 1e-07 31.1 2.6 0.00061 18.7 0.6 3.9 3 1 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|302348861|ref|YP_003816499.1| - 1.4e-07 30.6 7.0 0.00088 18.2 0.3 3.4 2 1 1 3 3 3 3 FAD binding domain K_oxygenase PF13434.1 gi|302348861|ref|YP_003816499.1| - 6e-06 25.3 0.0 0.00019 20.4 0.0 2.1 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|302348861|ref|YP_003816499.1| - 7.7e-06 26.1 0.1 0.00092 19.3 0.0 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|302348861|ref|YP_003816499.1| - 1.4e-05 24.2 10.8 0.017 14.0 0.2 4.0 3 1 0 4 4 4 3 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|302348861|ref|YP_003816499.1| - 2e-05 23.8 2.7 0.005 15.9 0.1 2.4 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|302348861|ref|YP_003816499.1| - 0.00044 18.8 7.7 0.1 11.0 0.2 3.4 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|302348861|ref|YP_003816499.1| - 0.00053 19.9 1.1 1.3 9.1 0.2 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|302348861|ref|YP_003816499.1| - 0.00059 19.0 2.4 0.054 12.5 0.0 3.1 3 1 1 4 4 4 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|302348861|ref|YP_003816499.1| - 0.00077 18.6 0.7 0.15 11.1 0.1 2.7 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.13 gi|302348861|ref|YP_003816499.1| - 0.002 17.8 0.2 0.026 14.1 0.1 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|302348861|ref|YP_003816499.1| - 0.0051 16.2 0.2 0.022 14.1 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|302348861|ref|YP_003816499.1| - 0.007 15.5 0.1 0.093 11.8 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|302348861|ref|YP_003816499.1| - 0.0092 16.3 0.0 0.15 12.3 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain Lycopene_cycl PF05834.7 gi|302348861|ref|YP_003816499.1| - 0.018 13.9 5.9 0.95 8.3 0.1 3.2 2 1 1 3 3 3 0 Lycopene cyclase protein TrkA_N PF02254.13 gi|302348861|ref|YP_003816499.1| - 0.061 13.3 0.4 0.4 10.6 0.0 2.7 3 0 0 3 3 3 0 TrkA-N domain DAO PF01266.19 gi|302348862|ref|YP_003816500.1| - 0.00085 18.3 0.2 0.049 12.5 0.0 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|302348862|ref|YP_003816500.1| - 0.012 14.7 0.1 0.13 11.3 0.0 2.2 2 1 1 3 3 3 0 FAD binding domain NAD_binding_8 PF13450.1 gi|302348862|ref|YP_003816500.1| - 0.031 14.3 0.8 1.6 8.8 0.0 3.0 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|302348862|ref|YP_003816500.1| - 0.034 13.9 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_2 PF00890.19 gi|302348862|ref|YP_003816500.1| - 0.048 12.4 0.0 0.098 11.4 0.0 1.5 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.7 gi|302348862|ref|YP_003816500.1| - 0.097 11.5 0.0 0.18 10.7 0.0 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_10 PF13460.1 gi|302348862|ref|YP_003816500.1| - 0.11 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding Baculo_p24 PF05073.7 gi|302348862|ref|YP_003816500.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Baculovirus P24 capsid protein Pyr_redox_2 PF07992.9 gi|302348862|ref|YP_003816500.1| - 0.13 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AsnC_trans_reg PF01037.16 gi|302348863|ref|YP_003816501.1| - 3.2e-14 52.3 0.5 3.6e-14 52.2 0.3 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|302348863|ref|YP_003816501.1| - 0.019 14.6 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 GYD domain BLYB PF05289.6 gi|302348863|ref|YP_003816501.1| - 0.094 12.5 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Borrelia hemolysin accessory protein RecO_N_2 PF13114.1 gi|302348863|ref|YP_003816501.1| - 0.15 11.8 0.7 0.5 10.1 0.4 2.0 1 1 0 1 1 1 0 RecO N terminal Pribosyltran_N PF13793.1 gi|302348864|ref|YP_003816502.1| - 2.3e-25 88.5 0.1 3.7e-21 75.0 0.0 2.4 2 1 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.1 gi|302348864|ref|YP_003816502.1| - 4.9e-18 65.5 2.6 7.9e-14 51.8 1.2 2.7 2 1 0 3 3 3 2 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.22 gi|302348864|ref|YP_003816502.1| - 2.3e-16 59.6 0.2 6.2e-16 58.2 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|302348864|ref|YP_003816502.1| - 2.5e-07 30.1 0.1 4.9e-07 29.1 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|302348864|ref|YP_003816502.1| - 0.00063 19.1 0.1 0.001 18.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase PRTase_3 PF15610.1 gi|302348864|ref|YP_003816502.1| - 0.0083 15.0 0.0 0.014 14.3 0.0 1.4 1 0 0 1 1 1 1 PRTase ComF-like DUF218 PF02698.12 gi|302348864|ref|YP_003816502.1| - 0.023 14.1 0.1 0.055 12.9 0.0 1.7 2 0 0 2 2 2 0 DUF218 domain Pribosyltran PF00156.22 gi|302348865|ref|YP_003816503.1| - 2.9e-16 59.3 0.1 4.8e-16 58.6 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|302348865|ref|YP_003816503.1| - 1.6e-05 24.6 0.0 5.6e-05 22.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|302348865|ref|YP_003816503.1| - 0.0025 17.8 0.0 0.005 16.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|302348865|ref|YP_003816503.1| - 0.12 12.5 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain S1 PF00575.18 gi|302348866|ref|YP_003816504.1| - 8.4e-12 45.0 0.4 1.6e-11 44.0 0.3 1.4 1 0 0 1 1 1 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.12 gi|302348866|ref|YP_003816504.1| - 1.3e-10 41.2 0.0 2.7e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 COMP PF11598.3 gi|302348866|ref|YP_003816504.1| - 0.11 12.5 0.1 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein tRNA_bind PF01588.15 gi|302348867|ref|YP_003816505.1| - 1.2e-29 101.9 0.0 1.4e-29 101.7 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain DUF2097 PF09870.4 gi|302348868|ref|YP_003816506.1| - 0.053 13.5 0.0 0.077 13.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2097) ResIII PF04851.10 gi|302348869|ref|YP_003816507.1| - 3.2e-23 82.4 0.3 1.4e-22 80.4 0.0 2.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|302348869|ref|YP_003816507.1| - 1.3e-16 60.1 0.0 4.6e-16 58.4 0.0 2.0 1 1 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|302348869|ref|YP_003816507.1| - 2.4e-11 42.9 0.0 2.1e-09 36.6 0.0 2.3 1 1 1 2 2 2 2 SNF2 family N-terminal domain DEAD PF00270.24 gi|302348869|ref|YP_003816507.1| - 2.5e-11 43.3 0.1 1.8e-10 40.6 0.0 2.3 2 1 1 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|302348869|ref|YP_003816507.1| - 1.4e-06 27.9 0.5 0.0015 18.2 0.1 3.2 3 1 0 3 3 3 2 Part of AAA domain AAA_22 PF13401.1 gi|302348869|ref|YP_003816507.1| - 7.6e-05 22.8 0.1 0.00095 19.3 0.0 2.6 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.4 gi|302348869|ref|YP_003816507.1| - 0.012 14.6 0.0 0.032 13.2 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CoA_binding PF02629.14 gi|302348870|ref|YP_003816508.1| - 3.9e-33 113.8 6.7 2.9e-32 111.0 1.6 2.5 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|302348870|ref|YP_003816508.1| - 3.4e-16 59.2 0.2 6e-16 58.4 0.1 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|302348870|ref|YP_003816508.1| - 9.6e-14 51.1 0.1 3.9e-13 49.2 0.0 1.9 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|302348870|ref|YP_003816508.1| - 1.2e-10 41.6 0.8 7e-10 39.0 0.1 2.4 2 1 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|302348870|ref|YP_003816508.1| - 0.0047 17.4 0.2 0.016 15.7 0.1 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold PHP PF02811.14 gi|302348870|ref|YP_003816508.1| - 0.13 12.0 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 PHP domain ATP-grasp_2 PF08442.5 gi|302348871|ref|YP_003816509.1| - 9.1e-56 188.4 0.0 2e-55 187.3 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|302348871|ref|YP_003816509.1| - 5.2e-17 61.8 0.1 7.8e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|302348871|ref|YP_003816509.1| - 6.5e-05 22.2 0.5 0.00052 19.2 0.3 2.2 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|302348871|ref|YP_003816509.1| - 0.00011 21.7 0.0 0.0002 20.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|302348871|ref|YP_003816509.1| - 0.0014 18.4 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|302348871|ref|YP_003816509.1| - 0.0025 17.4 0.0 0.0091 15.6 0.0 1.9 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain Alpha-amylase PF00128.19 gi|302348872|ref|YP_003816510.1| - 2.1e-53 181.7 0.0 3e-53 181.2 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain hDGE_amylase PF14701.1 gi|302348872|ref|YP_003816510.1| - 6.7e-05 21.9 0.0 0.0021 17.0 0.0 2.1 2 0 0 2 2 2 2 glucanotransferase domain of human glycogen debranching enzyme Phosphorylase PF00343.15 gi|302348873|ref|YP_003816511.1| - 1.8e-09 36.1 1.5 2.8e-08 32.1 0.3 2.1 2 0 0 2 2 2 2 Carbohydrate phosphorylase Glycos_transf_1 PF00534.15 gi|302348873|ref|YP_003816511.1| - 8.9e-08 31.7 0.0 2.8e-07 30.1 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302348873|ref|YP_003816511.1| - 0.001 19.2 0.0 0.0026 17.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Peripla_BP_2 PF01497.13 gi|302348874|ref|YP_003816512.1| - 6.4e-30 104.0 0.0 7.6e-30 103.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein MM_CoA_mutase PF01642.17 gi|302348875|ref|YP_003816513.1| - 4.3e-195 648.7 0.0 4.9e-195 648.5 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase B12-binding PF02310.14 gi|302348876|ref|YP_003816514.1| - 5.6e-23 81.0 2.8 5.7e-23 81.0 1.3 1.5 1 1 1 2 2 2 1 B12 binding domain TPP_enzyme_N PF02776.13 gi|302348876|ref|YP_003816514.1| - 0.013 14.9 0.1 1.4 8.3 0.0 2.7 1 1 2 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PEP_mutase PF13714.1 gi|302348876|ref|YP_003816514.1| - 0.019 14.1 0.0 0.036 13.2 0.0 1.5 1 1 0 1 1 1 0 Phosphoenolpyruvate phosphomutase HHH_5 PF14520.1 gi|302348876|ref|YP_003816514.1| - 0.028 14.5 0.5 0.11 12.6 0.3 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain adh_short_C2 PF13561.1 gi|302348876|ref|YP_003816514.1| - 0.047 13.4 0.0 0.06 13.1 0.0 1.1 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase TP_methylase PF00590.15 gi|302348876|ref|YP_003816514.1| - 0.083 12.5 0.1 0.47 10.1 0.0 2.1 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases OKR_DC_1_N PF03709.10 gi|302348876|ref|YP_003816514.1| - 0.099 12.6 0.0 0.2 11.6 0.0 1.5 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Radical_SAM PF04055.16 gi|302348876|ref|YP_003816514.1| - 0.16 12.1 0.2 0.89 9.7 0.1 1.9 1 1 1 2 2 2 0 Radical SAM superfamily ArgK PF03308.11 gi|302348877|ref|YP_003816515.1| - 1.8e-101 338.4 1.0 2.3e-101 338.0 0.7 1.1 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|302348877|ref|YP_003816515.1| - 2.6e-10 40.0 0.2 6.6e-10 38.7 0.2 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|302348877|ref|YP_003816515.1| - 3.8e-09 36.2 0.0 7.2e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|302348877|ref|YP_003816515.1| - 1.3e-06 27.9 0.1 2.3e-05 23.9 0.1 2.4 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|302348877|ref|YP_003816515.1| - 2.2e-05 24.1 0.2 0.00019 21.1 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|302348877|ref|YP_003816515.1| - 0.00023 20.7 0.0 0.0013 18.3 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|302348877|ref|YP_003816515.1| - 0.00032 20.4 0.8 0.00062 19.5 0.1 1.8 2 0 0 2 2 2 1 NTPase AAA_10 PF12846.2 gi|302348877|ref|YP_003816515.1| - 0.00038 19.9 0.2 0.0011 18.4 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|302348877|ref|YP_003816515.1| - 0.00041 21.1 0.4 0.0012 19.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain KaiC PF06745.8 gi|302348877|ref|YP_003816515.1| - 0.00052 19.2 0.4 0.0087 15.1 0.0 2.2 2 0 0 2 2 2 1 KaiC AAA_31 PF13614.1 gi|302348877|ref|YP_003816515.1| - 0.00063 19.6 0.1 1.2 9.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain APS_kinase PF01583.15 gi|302348877|ref|YP_003816515.1| - 0.00078 19.1 0.9 0.3 10.7 0.0 2.6 2 1 0 2 2 2 1 Adenylylsulphate kinase AAA_30 PF13604.1 gi|302348877|ref|YP_003816515.1| - 0.0019 17.8 0.0 0.0044 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|302348877|ref|YP_003816515.1| - 0.0031 17.8 0.8 0.0064 16.7 0.2 1.8 2 0 0 2 2 1 1 AAA domain MMR_HSR1 PF01926.18 gi|302348877|ref|YP_003816515.1| - 0.0031 17.4 0.6 0.0064 16.4 0.4 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|302348877|ref|YP_003816515.1| - 0.0067 16.4 0.3 0.025 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain KAP_NTPase PF07693.9 gi|302348877|ref|YP_003816515.1| - 0.0084 15.1 0.0 0.026 13.5 0.0 2.0 1 1 1 2 2 2 1 KAP family P-loop domain AAA_19 PF13245.1 gi|302348877|ref|YP_003816515.1| - 0.0098 15.6 0.1 0.037 13.7 0.1 2.0 1 0 0 1 1 1 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|302348877|ref|YP_003816515.1| - 0.014 14.9 0.1 0.022 14.2 0.1 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TrwB_AAD_bind PF10412.4 gi|302348877|ref|YP_003816515.1| - 0.014 14.0 0.1 0.022 13.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KTI12 PF08433.5 gi|302348877|ref|YP_003816515.1| - 0.017 14.3 0.0 0.034 13.3 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 GTP_EFTU PF00009.22 gi|302348877|ref|YP_003816515.1| - 0.019 14.3 0.1 0.074 12.4 0.0 1.9 2 1 0 2 2 1 0 Elongation factor Tu GTP binding domain ABC_tran PF00005.22 gi|302348877|ref|YP_003816515.1| - 0.022 15.0 0.5 0.053 13.8 0.1 1.7 2 0 0 2 2 2 0 ABC transporter Zeta_toxin PF06414.7 gi|302348877|ref|YP_003816515.1| - 0.024 13.7 0.0 0.055 12.5 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin MipZ PF09140.6 gi|302348877|ref|YP_003816515.1| - 0.033 13.2 0.0 0.065 12.3 0.0 1.5 1 0 0 1 1 1 0 ATPase MipZ PIF1 PF05970.9 gi|302348877|ref|YP_003816515.1| - 0.042 12.8 0.0 0.077 11.9 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_28 PF13521.1 gi|302348877|ref|YP_003816515.1| - 0.047 13.6 0.1 0.24 11.3 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|302348877|ref|YP_003816515.1| - 0.049 13.5 0.1 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|302348877|ref|YP_003816515.1| - 0.052 12.5 0.0 0.078 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|302348877|ref|YP_003816515.1| - 0.063 12.1 0.0 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Thymidylate_kin PF02223.12 gi|302348877|ref|YP_003816515.1| - 0.067 12.5 0.2 0.13 11.6 0.0 1.5 2 0 0 2 2 1 0 Thymidylate kinase AAA_25 PF13481.1 gi|302348877|ref|YP_003816515.1| - 0.081 12.3 0.4 0.3 10.4 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|302348877|ref|YP_003816515.1| - 0.093 12.8 0.1 0.41 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|302348877|ref|YP_003816515.1| - 0.11 11.7 0.1 0.31 10.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|302348877|ref|YP_003816515.1| - 0.12 11.9 0.1 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ribosomal_S28e PF01200.13 gi|302348879|ref|YP_003816517.1| - 4e-31 106.5 4.8 4.6e-31 106.3 3.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|302348879|ref|YP_003816517.1| - 0.07 12.8 0.5 1.1 9.1 0.1 2.5 2 1 0 2 2 2 0 KOW motif RNase_P_Rpp14 PF01900.14 gi|302348880|ref|YP_003816518.1| - 2.9e-16 59.3 0.0 3e-16 59.2 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family Pox_VERT_large PF04441.8 gi|302348880|ref|YP_003816518.1| - 0.075 11.1 0.0 0.075 11.1 0.0 1.0 1 0 0 1 1 1 0 Poxvirus early transcription factor (VETF), large subunit MMR_HSR1_C PF08438.5 gi|302348881|ref|YP_003816519.1| - 4e-32 110.6 0.0 7.3e-32 109.8 0.0 1.5 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|302348881|ref|YP_003816519.1| - 1e-16 60.8 0.0 8.5e-16 57.9 0.0 2.3 1 1 1 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|302348881|ref|YP_003816519.1| - 1.2e-16 60.2 0.0 2.3e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|302348881|ref|YP_003816519.1| - 2.9e-08 33.1 0.4 0.00017 20.8 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B Miro PF08477.8 gi|302348881|ref|YP_003816519.1| - 0.0002 21.8 0.1 0.0037 17.7 0.0 2.7 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU PF00009.22 gi|302348881|ref|YP_003816519.1| - 0.003 16.9 0.3 0.057 12.8 0.0 2.7 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.8 gi|302348881|ref|YP_003816519.1| - 0.012 15.3 0.1 0.26 11.0 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF933) Dynamin_N PF00350.18 gi|302348881|ref|YP_003816519.1| - 0.086 12.6 0.1 2.9 7.6 0.0 2.6 3 0 0 3 3 3 0 Dynamin family DUF3600 PF12207.3 gi|302348882|ref|YP_003816520.1| - 0.016 14.7 0.0 0.035 13.6 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3600) PMT_2 PF13231.1 gi|302348883|ref|YP_003816521.1| - 2.6e-09 37.1 14.3 2.6e-09 37.1 9.9 3.3 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|302348883|ref|YP_003816521.1| - 0.00031 20.1 30.5 0.0014 18.0 16.4 3.5 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2332 PF10094.4 gi|302348883|ref|YP_003816521.1| - 0.051 12.5 0.5 0.072 12.0 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2332) DUF1422 PF07226.6 gi|302348883|ref|YP_003816521.1| - 1.7 8.3 12.4 2.8 7.6 0.3 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1422) PIG-X PF08320.7 gi|302348884|ref|YP_003816522.1| - 0.026 13.8 0.0 0.026 13.8 0.0 1.1 1 0 0 1 1 1 0 PIG-X / PBN1 DUF1152 PF06626.7 gi|302348884|ref|YP_003816522.1| - 0.091 11.8 0.0 0.092 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1152) UPF0228 PF05727.6 gi|302348886|ref|YP_003816524.1| - 0.094 12.4 0.0 0.23 11.2 0.0 1.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0228) TFIIIC_delta PF12657.2 gi|302348886|ref|YP_003816524.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Transcription factor IIIC subunit delta N-term LemA PF04011.7 gi|302348887|ref|YP_003816525.1| - 0.12 11.5 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 LemA family Cbl_N2 PF02761.9 gi|302348888|ref|YP_003816526.1| - 0.029 14.4 0.0 0.034 14.2 0.0 1.2 1 0 0 1 1 1 0 CBL proto-oncogene N-terminus, EF hand-like domain NTP_transferase PF00483.18 gi|302348889|ref|YP_003816527.1| - 3.1e-29 102.0 0.0 3.9e-29 101.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|302348889|ref|YP_003816527.1| - 5.4e-19 66.7 11.4 7.6e-06 25.2 0.6 4.4 4 0 0 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|302348889|ref|YP_003816527.1| - 5.3e-14 52.5 0.0 6.7e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|302348889|ref|YP_003816527.1| - 7.7e-06 25.5 0.0 1.3e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|302348889|ref|YP_003816527.1| - 0.0085 15.6 8.1 3.4 7.3 0.2 4.2 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase Lactamase_B PF00753.22 gi|302348890|ref|YP_003816528.1| - 7.4e-15 55.1 0.9 3.4e-10 39.9 0.2 2.1 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|302348890|ref|YP_003816528.1| - 1e-06 28.4 0.0 1.4e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|302348890|ref|YP_003816528.1| - 0.11 12.2 0.0 0.41 10.3 0.0 1.9 2 0 0 2 2 2 0 Beta-lactamase superfamily domain NDK PF00334.14 gi|302348891|ref|YP_003816529.1| - 6.9e-59 197.4 0.0 7.7e-59 197.3 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU PF00009.22 gi|302348892|ref|YP_003816530.1| - 1.2e-31 109.6 0.0 7.4e-31 107.0 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.1 gi|302348892|ref|YP_003816530.1| - 1.4e-27 95.0 1.8 1.4e-27 95.0 1.3 3.3 3 0 0 3 3 3 1 Elongation factor Tu domain 4 IF-2 PF11987.3 gi|302348892|ref|YP_003816530.1| - 1.8e-24 85.6 0.4 4.4e-24 84.4 0.3 1.6 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|302348892|ref|YP_003816530.1| - 3e-14 52.9 9.7 9.6e-13 48.0 0.1 3.6 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|302348892|ref|YP_003816530.1| - 1.3e-05 25.1 0.6 4.5e-05 23.3 0.0 2.3 3 0 0 3 3 3 1 50S ribosome-binding GTPase Miro PF08477.8 gi|302348892|ref|YP_003816530.1| - 2.3e-05 24.8 0.0 9.1e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 Miro-like protein Ras PF00071.17 gi|302348892|ref|YP_003816530.1| - 0.021 14.2 0.0 0.12 11.7 0.0 2.1 1 1 0 1 1 1 0 Ras family ATP_bind_1 PF03029.12 gi|302348892|ref|YP_003816530.1| - 0.032 13.7 0.0 0.11 12.0 0.0 1.9 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|302348892|ref|YP_003816530.1| - 0.052 13.3 0.1 0.68 9.7 0.0 2.4 2 0 0 2 2 2 0 Dynamin family DUF367 PF04034.8 gi|302348892|ref|YP_003816530.1| - 0.063 12.8 0.0 0.32 10.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF367) NTP_transferase PF00483.18 gi|302348893|ref|YP_003816531.1| - 9.4e-37 126.6 0.0 1.1e-36 126.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|302348893|ref|YP_003816531.1| - 1.2e-11 44.9 0.0 1.3e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|302348893|ref|YP_003816531.1| - 0.00012 21.7 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.1 gi|302348893|ref|YP_003816531.1| - 0.018 14.5 0.0 0.042 13.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) Fcf1 PF04900.7 gi|302348894|ref|YP_003816532.1| - 4.8e-14 52.2 0.1 6.2e-14 51.9 0.1 1.1 1 0 0 1 1 1 1 Fcf1 PIN PF01850.16 gi|302348894|ref|YP_003816532.1| - 4.7e-05 23.6 1.4 0.00047 20.4 1.0 2.0 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|302348894|ref|YP_003816532.1| - 0.00069 19.7 2.6 0.019 15.0 1.8 2.1 1 1 0 1 1 1 1 PIN domain 5_3_exonuc_N PF02739.11 gi|302348894|ref|YP_003816532.1| - 0.0072 15.7 0.1 0.0084 15.4 0.1 1.2 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain NYN_YacP PF05991.6 gi|302348894|ref|YP_003816532.1| - 0.016 14.9 0.1 0.027 14.1 0.0 1.4 1 1 0 1 1 1 0 YacP-like NYN domain PIN_3 PF13470.1 gi|302348894|ref|YP_003816532.1| - 0.019 15.6 0.1 0.052 14.2 0.0 1.6 1 1 1 2 2 2 0 PIN domain TK PF00265.13 gi|302348894|ref|YP_003816532.1| - 0.12 11.9 0.1 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Thymidine kinase GTP_EFTU PF00009.22 gi|302348895|ref|YP_003816533.1| - 1.9e-43 148.0 0.0 3e-43 147.4 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|302348895|ref|YP_003816533.1| - 1.1e-27 95.9 0.1 2.3e-27 94.8 0.0 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|302348895|ref|YP_003816533.1| - 1.4e-11 44.3 1.4 6.3e-09 35.8 0.5 3.4 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|302348895|ref|YP_003816533.1| - 0.00052 19.9 0.0 0.0009 19.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|302348895|ref|YP_003816533.1| - 0.0021 17.5 0.1 0.46 9.9 0.0 2.2 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|302348895|ref|YP_003816533.1| - 0.0074 15.5 0.2 2.7 7.2 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B Miro PF08477.8 gi|302348895|ref|YP_003816533.1| - 0.026 14.9 0.1 0.12 12.9 0.0 2.1 1 1 0 1 1 1 0 Miro-like protein ArgK PF03308.11 gi|302348895|ref|YP_003816533.1| - 0.058 12.1 0.0 1.4 7.5 0.0 2.4 3 0 0 3 3 3 0 ArgK protein Dynamin_N PF00350.18 gi|302348895|ref|YP_003816533.1| - 0.072 12.9 0.0 0.23 11.2 0.0 1.8 1 1 0 2 2 2 0 Dynamin family Spore_IV_A PF09547.5 gi|302348895|ref|YP_003816533.1| - 0.095 11.3 0.0 0.16 10.6 0.0 1.3 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) Ribosomal_S6e PF01092.14 gi|302348896|ref|YP_003816534.1| - 4.1e-24 84.6 0.3 1.4e-23 82.8 0.0 1.9 2 1 1 3 3 3 1 Ribosomal protein S6e Molydop_binding PF01568.16 gi|302348896|ref|YP_003816534.1| - 0.035 13.9 0.1 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain RNA_pol_Rpb5_C PF01191.14 gi|302348896|ref|YP_003816534.1| - 0.068 12.7 0.3 0.76 9.4 0.0 2.5 3 0 0 3 3 3 0 RNA polymerase Rpb5, C-terminal domain PhosphMutase PF10143.4 gi|302348897|ref|YP_003816535.1| - 1e-50 171.7 0.0 1.5e-50 171.2 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|302348897|ref|YP_003816535.1| - 6.7e-28 97.7 0.0 8.9e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|302348897|ref|YP_003816535.1| - 0.044 13.1 0.3 0.11 11.7 0.2 1.6 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|302348897|ref|YP_003816535.1| - 0.15 11.6 0.0 0.44 10.1 0.0 1.7 2 0 0 2 2 2 0 PglZ domain Ribosomal_S13_N PF08069.7 gi|302348900|ref|YP_003816538.1| - 6.4e-24 83.5 0.0 1.2e-23 82.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|302348900|ref|YP_003816538.1| - 1.5e-22 79.0 0.2 4.1e-22 77.7 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein S15 RecX PF02631.11 gi|302348900|ref|YP_003816538.1| - 0.032 14.4 0.0 3.7 7.7 0.0 2.1 2 0 0 2 2 2 0 RecX family Glycos_trans_3N PF02885.12 gi|302348900|ref|YP_003816538.1| - 0.093 12.3 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family, helical bundle domain Ribosomal_S3Ae PF01015.13 gi|302348901|ref|YP_003816539.1| - 1.3e-58 197.5 1.0 1.6e-58 197.2 0.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Band_7 PF01145.20 gi|302348901|ref|YP_003816539.1| - 0.00016 21.6 0.8 0.00058 19.8 0.5 1.9 1 1 0 1 1 1 1 SPFH domain / Band 7 family RNA_POL_M_15KD PF02150.11 gi|302348902|ref|YP_003816540.1| - 1.3e-06 27.9 0.4 2.2e-06 27.2 0.3 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.6 gi|302348902|ref|YP_003816540.1| - 3.2e-05 23.3 1.7 0.0006 19.2 1.5 2.2 1 1 1 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|302348902|ref|YP_003816540.1| - 0.00082 18.5 1.0 0.00082 18.5 0.7 1.6 2 0 0 2 2 1 1 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.6 gi|302348902|ref|YP_003816540.1| - 0.001 18.6 0.5 0.002 17.7 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|302348902|ref|YP_003816540.1| - 0.0026 17.5 0.4 0.0051 16.6 0.3 1.5 1 0 0 1 1 1 1 IBR domain SBDS PF01172.13 gi|302348902|ref|YP_003816540.1| - 0.0035 17.0 1.0 0.0041 16.8 0.7 1.1 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein zinc_ribbon_2 PF13240.1 gi|302348902|ref|YP_003816540.1| - 0.0039 16.6 3.4 1.2 8.7 0.8 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|302348902|ref|YP_003816540.1| - 0.0049 16.6 0.3 0.0087 15.8 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon DUF2387 PF09526.5 gi|302348902|ref|YP_003816540.1| - 0.0068 16.3 4.5 0.024 14.5 3.1 1.9 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) Zn_ribbon_recom PF13408.1 gi|302348902|ref|YP_003816540.1| - 0.0074 16.5 4.9 0.55 10.5 0.5 2.3 1 1 1 2 2 2 2 Recombinase zinc beta ribbon domain DUF1936 PF09151.5 gi|302348902|ref|YP_003816540.1| - 0.01 15.3 3.1 0.023 14.2 2.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) PcfK PF14058.1 gi|302348902|ref|YP_003816540.1| - 0.015 15.4 1.9 0.019 15.1 1.3 1.2 1 0 0 1 1 1 0 PcfK-like protein UPF0547 PF10571.4 gi|302348902|ref|YP_003816540.1| - 0.017 14.8 2.0 1.7 8.4 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|302348902|ref|YP_003816540.1| - 0.025 13.7 5.7 0.22 10.7 4.0 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|302348902|ref|YP_003816540.1| - 0.032 13.7 1.6 2.5 7.6 0.2 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.1 gi|302348902|ref|YP_003816540.1| - 0.036 14.1 2.9 0.85 9.6 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|302348902|ref|YP_003816540.1| - 0.055 13.2 0.3 0.1 12.4 0.2 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain YhfH PF14149.1 gi|302348902|ref|YP_003816540.1| - 0.064 13.0 0.7 11 5.9 0.1 2.5 2 0 0 2 2 2 0 YhfH-like protein zf-C3HC PF07967.8 gi|302348902|ref|YP_003816540.1| - 0.1 12.3 0.6 0.21 11.3 0.5 1.5 1 1 0 1 1 1 0 C3HC zinc finger-like Ogr_Delta PF04606.7 gi|302348902|ref|YP_003816540.1| - 0.2 11.3 3.9 7.8 6.2 0.1 3.0 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger C1_1 PF00130.17 gi|302348902|ref|YP_003816540.1| - 0.23 11.1 0.9 0.35 10.6 0.6 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-FPG_IleRS PF06827.9 gi|302348902|ref|YP_003816540.1| - 0.25 11.0 6.1 0.3 10.7 0.1 2.6 3 0 0 3 3 2 0 Zinc finger found in FPG and IleRS DUF2072 PF09845.4 gi|302348902|ref|YP_003816540.1| - 0.36 10.7 6.7 0.65 9.9 4.6 1.5 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Elf1 PF05129.8 gi|302348902|ref|YP_003816540.1| - 0.39 10.4 3.4 0.24 11.1 0.2 2.0 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like FYDLN_acid PF09538.5 gi|302348902|ref|YP_003816540.1| - 0.43 11.1 7.4 1 9.9 5.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-IS66 PF13005.2 gi|302348902|ref|YP_003816540.1| - 0.44 10.5 3.8 0.66 9.9 0.1 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|302348902|ref|YP_003816540.1| - 0.49 10.1 4.3 8.4 6.1 3.4 2.2 1 1 1 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.1 gi|302348902|ref|YP_003816540.1| - 0.52 10.6 2.4 1.1 9.6 1.6 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-tcix PF14952.1 gi|302348902|ref|YP_003816540.1| - 1.1 8.6 4.3 9.5 5.6 0.1 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Ribosomal_L37e PF01907.14 gi|302348902|ref|YP_003816540.1| - 1.5 8.6 3.8 4.4 7.1 2.6 1.8 1 1 0 1 1 1 0 Ribosomal protein L37e Radical_SAM PF04055.16 gi|302348903|ref|YP_003816541.1| - 1.1e-21 77.7 0.0 4.9e-21 75.5 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|302348903|ref|YP_003816541.1| - 0.00073 19.6 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-NADH-PPase PF09297.6 gi|302348903|ref|YP_003816541.1| - 0.0016 17.9 0.7 0.85 9.1 0.0 2.5 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|302348903|ref|YP_003816541.1| - 0.0021 17.2 3.5 0.0021 17.2 2.5 3.0 2 1 2 4 4 4 3 zinc-ribbon domain DZR PF12773.2 gi|302348903|ref|YP_003816541.1| - 0.0033 17.2 0.1 0.0033 17.2 0.0 2.5 3 0 0 3 3 3 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|302348903|ref|YP_003816541.1| - 0.0044 16.4 6.1 0.42 10.1 0.0 2.9 3 0 0 3 3 3 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|302348903|ref|YP_003816541.1| - 0.04 13.6 0.6 2.9 7.6 0.1 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain GFA PF04828.9 gi|302348903|ref|YP_003816541.1| - 0.1 12.5 1.4 3.8 7.5 0.0 3.0 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Auto_anti-p27 PF06677.7 gi|302348903|ref|YP_003816541.1| - 0.13 12.0 0.6 3.1 7.6 0.0 2.6 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.14 gi|302348903|ref|YP_003816541.1| - 0.33 10.4 7.6 1.9 8.0 0.0 3.5 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|302348903|ref|YP_003816541.1| - 0.54 9.6 3.5 8.6 5.7 0.0 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|302348903|ref|YP_003816541.1| - 0.97 9.0 5.3 11 5.6 0.0 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|302348903|ref|YP_003816541.1| - 2.9 7.9 10.2 2.2 8.3 0.0 2.8 2 1 1 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|302348904|ref|YP_003816542.1| - 0.0067 15.5 0.5 0.59 9.4 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|302348904|ref|YP_003816542.1| - 0.02 14.7 0.1 0.041 13.7 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|302348904|ref|YP_003816542.1| - 0.031 13.9 0.1 0.079 12.6 0.1 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.6 gi|302348904|ref|YP_003816542.1| - 0.057 12.9 0.1 0.12 11.8 0.1 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|302348904|ref|YP_003816542.1| - 0.059 12.8 2.8 1.6 8.3 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|302348904|ref|YP_003816542.1| - 0.12 12.1 2.0 0.12 12.0 0.1 2.0 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|302348904|ref|YP_003816542.1| - 1.3 8.9 3.8 33 4.3 0.1 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Translin PF01997.11 gi|302348905|ref|YP_003816543.1| - 3.2e-40 137.8 0.0 3.7e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 Translin family TPR_12 PF13424.1 gi|302348905|ref|YP_003816543.1| - 0.0039 17.1 1.5 0.024 14.5 0.0 2.6 3 0 0 3 3 3 1 Tetratricopeptide repeat PPR_3 PF13812.1 gi|302348905|ref|YP_003816543.1| - 0.072 13.4 0.1 0.41 11.0 0.0 2.3 2 0 0 2 2 2 0 Pentatricopeptide repeat domain TPR_8 PF13181.1 gi|302348905|ref|YP_003816543.1| - 0.082 12.7 0.1 0.8 9.6 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|302348905|ref|YP_003816543.1| - 0.24 11.4 1.8 0.86 9.6 0.0 2.7 3 0 0 3 3 3 0 Tetratricopeptide repeat B12-binding PF02310.14 gi|302348906|ref|YP_003816544.1| - 0.081 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 B12 binding domain Ribosomal_L40e PF01020.12 gi|302348907|ref|YP_003816545.1| - 9.1e-07 28.3 1.7 1.1e-06 28.1 1.2 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.1 gi|302348907|ref|YP_003816545.1| - 6.1e-05 22.3 4.3 8.5e-05 21.9 3.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.13 gi|302348907|ref|YP_003816545.1| - 8.2e-05 21.6 1.4 0.00011 21.2 0.9 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|302348907|ref|YP_003816545.1| - 0.00044 19.3 2.6 0.00058 18.9 1.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|302348907|ref|YP_003816545.1| - 0.0011 18.6 1.3 0.0015 18.3 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|302348907|ref|YP_003816545.1| - 0.05 13.2 0.4 0.055 13.1 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF35_N PF12172.3 gi|302348907|ref|YP_003816545.1| - 0.06 13.2 3.4 0.089 12.7 2.4 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2082 PF09855.4 gi|302348907|ref|YP_003816545.1| - 0.12 12.2 0.5 1.2 9.0 0.0 2.0 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.11 gi|302348907|ref|YP_003816545.1| - 0.15 11.7 3.3 0.51 10.0 0.0 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-DHHC PF01529.15 gi|302348907|ref|YP_003816545.1| - 0.23 10.8 1.0 0.23 10.8 0.7 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF2296 PF10058.4 gi|302348907|ref|YP_003816545.1| - 0.58 9.9 5.9 4.9 6.9 4.1 2.1 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Methyltransf_13 PF08421.6 gi|302348907|ref|YP_003816545.1| - 0.62 9.6 2.9 11 5.6 0.0 2.1 2 0 0 2 2 2 0 Putative zinc binding domain zf-trcl PF13451.1 gi|302348907|ref|YP_003816545.1| - 2.4 7.8 5.3 9.7 5.9 0.1 2.2 2 0 0 2 2 2 0 Probable zinc-binding domain Ribosomal_S26e PF01283.14 gi|302348908|ref|YP_003816546.1| - 3.1e-32 111.2 1.3 3.3e-32 111.0 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e PRP21_like_P PF12230.3 gi|302348908|ref|YP_003816546.1| - 0.018 14.5 0.1 0.023 14.1 0.1 1.2 1 0 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein DZR PF12773.2 gi|302348908|ref|YP_003816546.1| - 0.02 14.6 1.3 0.073 12.9 0.1 2.0 2 0 0 2 2 2 0 Double zinc ribbon PHD PF00628.24 gi|302348908|ref|YP_003816546.1| - 0.024 14.3 0.5 0.1 12.2 0.0 2.0 2 0 0 2 2 2 0 PHD-finger DUF164 PF02591.10 gi|302348908|ref|YP_003816546.1| - 0.042 13.6 0.8 0.29 11.0 0.1 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-dskA_traR PF01258.12 gi|302348908|ref|YP_003816546.1| - 0.052 13.2 3.9 0.57 9.9 0.2 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-C2HC_2 PF13913.1 gi|302348908|ref|YP_003816546.1| - 0.053 13.1 0.2 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ribosomal_L18ae PF01775.12 gi|302348909|ref|YP_003816547.1| - 7e-11 42.1 0.0 9.8e-11 41.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Prefoldin PF02996.12 gi|302348910|ref|YP_003816548.1| - 2.2e-15 56.3 0.2 2.9e-15 55.9 0.1 1.1 1 0 0 1 1 1 1 Prefoldin subunit ATP-synt_B PF00430.13 gi|302348910|ref|YP_003816548.1| - 0.0002 21.1 2.1 0.00035 20.3 1.5 1.3 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) vATP-synt_E PF01991.13 gi|302348910|ref|YP_003816548.1| - 0.0099 15.1 1.2 0.012 14.9 0.2 1.5 2 0 0 2 2 2 1 ATP synthase (E/31 kDa) subunit Syntaxin_2 PF14523.1 gi|302348910|ref|YP_003816548.1| - 0.013 15.5 1.1 4.3 7.4 0.1 2.2 2 0 0 2 2 2 0 Syntaxin-like protein CENP-F_N PF10481.4 gi|302348910|ref|YP_003816548.1| - 0.019 14.3 0.5 0.03 13.7 0.3 1.3 1 0 0 1 1 1 0 Cenp-F N-terminal domain Sec34 PF04136.10 gi|302348910|ref|YP_003816548.1| - 0.043 13.5 0.7 0.26 10.9 0.1 1.9 2 0 0 2 2 2 0 Sec34-like family Rab5-bind PF09311.6 gi|302348910|ref|YP_003816548.1| - 0.044 13.6 2.6 0.86 9.4 0.3 2.1 2 0 0 2 2 2 0 Rabaptin-like protein Prefoldin_2 PF01920.15 gi|302348910|ref|YP_003816548.1| - 0.058 13.1 1.6 2.8 7.7 0.4 2.1 2 0 0 2 2 2 0 Prefoldin subunit COG2 PF06148.6 gi|302348910|ref|YP_003816548.1| - 0.063 13.1 0.8 7.6 6.4 0.0 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 BLOC1_2 PF10046.4 gi|302348910|ref|YP_003816548.1| - 0.069 13.2 2.1 3.3 7.9 0.2 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlgN PF05130.7 gi|302348910|ref|YP_003816548.1| - 0.097 12.9 2.4 0.54 10.5 0.3 2.0 2 0 0 2 2 2 0 FlgN protein GAS PF13851.1 gi|302348910|ref|YP_003816548.1| - 0.12 11.5 1.6 3 6.9 0.3 2.0 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF2762 PF10960.3 gi|302348910|ref|YP_003816548.1| - 0.13 11.9 0.1 0.28 10.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2762) NPV_P10 PF05531.7 gi|302348910|ref|YP_003816548.1| - 0.18 12.0 4.1 1.4 9.1 0.2 2.6 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Syntaxin PF00804.20 gi|302348910|ref|YP_003816548.1| - 0.22 11.7 1.9 2.3 8.4 1.3 2.1 1 1 0 1 1 1 0 Syntaxin V-SNARE PF05008.10 gi|302348910|ref|YP_003816548.1| - 0.25 11.5 3.3 0.76 9.9 1.0 2.2 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Matrilin_ccoil PF10393.4 gi|302348910|ref|YP_003816548.1| - 0.56 9.6 3.8 0.55 9.6 0.3 2.6 2 2 1 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin BMFP PF04380.8 gi|302348910|ref|YP_003816548.1| - 0.69 10.0 3.5 3.4 7.8 0.2 2.3 2 0 0 2 2 2 0 Membrane fusogenic activity DivIVA PF05103.8 gi|302348910|ref|YP_003816548.1| - 0.81 9.7 3.7 3.1 7.8 0.8 2.0 2 0 0 2 2 2 0 DivIVA protein OEP PF02321.13 gi|302348910|ref|YP_003816548.1| - 2 7.9 8.5 0.37 10.3 2.0 1.9 2 0 0 2 2 2 0 Outer membrane efflux protein SRP54 PF00448.17 gi|302348911|ref|YP_003816549.1| - 4.7e-72 241.5 0.1 6.1e-72 241.1 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|302348911|ref|YP_003816549.1| - 3.5e-11 43.0 0.7 7.1e-11 42.0 0.5 1.5 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.1 gi|302348911|ref|YP_003816549.1| - 3e-05 24.1 0.0 7.2e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|302348911|ref|YP_003816549.1| - 0.00041 20.0 1.2 0.00086 19.0 0.1 2.1 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|302348911|ref|YP_003816549.1| - 0.00049 19.7 0.3 0.00091 18.8 0.2 1.5 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|302348911|ref|YP_003816549.1| - 0.0012 18.3 0.1 0.002 17.6 0.1 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|302348911|ref|YP_003816549.1| - 0.0077 15.9 0.5 0.08 12.6 0.1 2.4 3 0 0 3 3 3 1 NTPase AAA_33 PF13671.1 gi|302348911|ref|YP_003816549.1| - 0.02 14.7 0.0 0.052 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|302348911|ref|YP_003816549.1| - 0.022 14.9 0.1 0.049 13.8 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|302348911|ref|YP_003816549.1| - 0.048 12.4 0.1 0.1 11.3 0.1 1.5 1 0 0 1 1 1 0 ArgK protein AAA_19 PF13245.1 gi|302348911|ref|YP_003816549.1| - 0.072 12.8 2.4 0.33 10.7 0.5 2.4 1 1 1 2 2 2 0 Part of AAA domain TPP_enzyme_M PF00205.17 gi|302348911|ref|YP_003816549.1| - 0.083 12.6 0.2 5.6 6.7 0.0 2.7 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain Thymidylate_kin PF02223.12 gi|302348911|ref|YP_003816549.1| - 0.1 11.9 0.3 0.67 9.2 0.0 2.4 3 0 0 3 3 3 0 Thymidylate kinase NACHT PF05729.7 gi|302348911|ref|YP_003816549.1| - 0.13 11.9 0.0 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 NACHT domain CBS PF00571.23 gi|302348912|ref|YP_003816550.1| - 1.1e-52 175.4 7.6 5.1e-17 61.3 0.1 4.1 4 0 0 4 4 4 4 CBS domain IF3_N PF05198.11 gi|302348912|ref|YP_003816550.1| - 0.00099 18.9 0.7 4.8 7.1 0.0 3.9 4 0 0 4 4 4 2 Translation initiation factor IF-3, N-terminal domain PRC PF05239.11 gi|302348912|ref|YP_003816550.1| - 0.011 15.6 5.5 5.3 6.9 0.1 4.4 4 0 0 4 4 4 0 PRC-barrel domain Cache_3 PF14827.1 gi|302348912|ref|YP_003816550.1| - 0.016 15.0 0.2 7.9 6.4 0.0 3.2 3 0 0 3 3 3 0 Sensory domain of two-component sensor kinase Ribosomal_L9_C PF03948.9 gi|302348912|ref|YP_003816550.1| - 0.018 15.0 0.1 4.6 7.4 0.0 3.4 4 1 0 4 4 4 0 Ribosomal protein L9, C-terminal domain DUF3659 PF12396.3 gi|302348912|ref|YP_003816550.1| - 0.44 10.2 7.7 25 4.6 0.1 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3659) CBS PF00571.23 gi|302348913|ref|YP_003816551.1| - 3.2e-52 174.0 7.0 1.9e-15 56.3 0.2 4.3 4 0 0 4 4 4 4 CBS domain EF-hand_like PF09279.6 gi|302348913|ref|YP_003816551.1| - 0.0053 16.7 0.0 0.021 14.8 0.0 2.0 2 0 0 2 2 2 1 Phosphoinositide-specific phospholipase C, efhand-like CBS PF00571.23 gi|302348914|ref|YP_003816552.1| - 1.2e-50 168.9 0.5 3.6e-13 49.0 0.1 4.1 4 0 0 4 4 4 4 CBS domain Cache_3 PF14827.1 gi|302348914|ref|YP_003816552.1| - 0.083 12.7 0.4 9.3 6.1 0.0 2.9 3 1 1 4 4 4 0 Sensory domain of two-component sensor kinase HTH_26 PF13443.1 gi|302348915|ref|YP_003816553.1| - 0.14 12.3 0.0 2 8.7 0.0 2.4 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain Spt4 PF06093.8 gi|302348917|ref|YP_003816555.1| - 0.00095 18.9 0.0 0.001 18.8 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DUF359 PF04019.7 gi|302348918|ref|YP_003816556.1| - 2.3e-26 91.5 0.0 2.9e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) PhoU_div PF01865.11 gi|302348919|ref|YP_003816557.1| - 0.092 11.9 0.0 0.1 11.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF47 Clathrin_H_link PF13838.1 gi|302348919|ref|YP_003816557.1| - 0.094 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Clathrin-H-link DUF3990 PF13151.1 gi|302348919|ref|YP_003816557.1| - 0.11 11.8 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3990) zf-ribbon_3 PF13248.1 gi|302348920|ref|YP_003816558.1| - 0.00018 20.5 0.2 0.23 10.7 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|302348920|ref|YP_003816558.1| - 0.011 15.3 1.0 0.35 10.4 0.2 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Zn_ribbon_recom PF13408.1 gi|302348920|ref|YP_003816558.1| - 0.024 14.9 0.8 1.7 8.9 0.1 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.1 gi|302348920|ref|YP_003816558.1| - 0.033 14.2 0.4 2.9 7.9 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.8 gi|302348920|ref|YP_003816558.1| - 0.034 13.6 2.2 1.5 8.3 0.9 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|302348920|ref|YP_003816558.1| - 0.039 13.4 1.9 2.3 7.7 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|302348920|ref|YP_003816558.1| - 0.045 13.4 0.6 5.3 6.8 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.6 gi|302348920|ref|YP_003816558.1| - 0.055 12.9 2.8 4.1 6.9 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF164 PF02591.10 gi|302348920|ref|YP_003816558.1| - 0.055 13.2 0.8 0.92 9.3 0.1 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain DZR PF12773.2 gi|302348920|ref|YP_003816558.1| - 0.059 13.1 0.8 0.22 11.3 0.6 1.8 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|302348920|ref|YP_003816558.1| - 0.06 13.0 0.2 6.3 6.5 0.0 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|302348920|ref|YP_003816558.1| - 0.072 12.4 0.6 6.4 6.1 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|302348920|ref|YP_003816558.1| - 0.072 12.6 0.6 2.1 7.9 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|302348920|ref|YP_003816558.1| - 0.077 13.3 0.1 9.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|302348920|ref|YP_003816558.1| - 0.088 12.5 0.7 2.7 7.7 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-FCS PF06467.9 gi|302348920|ref|YP_003816558.1| - 0.11 12.0 0.1 8.7 6.0 0.0 2.2 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif RRN7 PF11781.3 gi|302348920|ref|YP_003816558.1| - 0.13 11.8 0.3 4.3 6.9 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 UPF0547 PF10571.4 gi|302348920|ref|YP_003816558.1| - 0.13 12.0 2.7 5.4 6.8 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_ligase_ZBD PF03119.11 gi|302348920|ref|YP_003816558.1| - 0.26 11.0 4.5 0.71 9.6 0.7 2.6 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.1 gi|302348920|ref|YP_003816558.1| - 0.44 10.2 4.0 4.5 7.0 0.3 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-HYPF PF07503.7 gi|302348920|ref|YP_003816558.1| - 0.67 9.4 4.5 2 7.8 0.2 2.5 2 1 0 2 2 2 0 HypF finger RIO1 PF01163.17 gi|302348921|ref|YP_003816559.1| - 0.019 14.2 0.0 0.032 13.5 0.0 1.4 1 0 0 1 1 1 0 RIO1 family tRNA_NucTransf2 PF09249.6 gi|302348922|ref|YP_003816560.1| - 2.6e-40 136.8 0.0 4.1e-40 136.2 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|302348922|ref|YP_003816560.1| - 1.3e-09 38.2 0.1 4.6e-09 36.4 0.0 1.9 2 0 0 2 2 2 1 Nucleotidyltransferase domain LigT_PEase PF02834.11 gi|302348923|ref|YP_003816561.1| - 4.3e-30 103.5 0.0 7.9e-16 57.8 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|302348923|ref|YP_003816561.1| - 7.7e-15 54.9 0.0 9.8e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|302348923|ref|YP_003816561.1| - 2.1e-14 53.7 0.0 6e-14 52.2 0.0 1.6 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Corona_NS2A PF05213.7 gi|302348923|ref|YP_003816561.1| - 0.003 16.9 0.0 0.0038 16.5 0.0 1.2 1 0 0 1 1 1 1 Coronavirus NS2A protein HVSL PF09749.4 gi|302348923|ref|YP_003816561.1| - 0.0055 15.7 0.0 0.0088 15.0 0.0 1.3 1 1 0 1 1 1 1 Uncharacterised conserved protein dsDNA_bind PF01984.15 gi|302348924|ref|YP_003816562.1| - 8.8e-24 83.5 6.9 1e-23 83.3 4.8 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.6 gi|302348924|ref|YP_003816562.1| - 0.00074 18.6 4.8 0.0009 18.3 3.3 1.1 1 0 0 1 1 1 1 Radial spoke protein 3 CENP-Q PF13094.1 gi|302348924|ref|YP_003816562.1| - 0.023 14.7 3.7 0.026 14.5 2.6 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF4574 PF15141.1 gi|302348924|ref|YP_003816562.1| - 0.084 12.6 3.7 0.14 11.9 2.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4574) Cwf_Cwc_15 PF04889.7 gi|302348924|ref|YP_003816562.1| - 0.18 11.4 8.2 0.29 10.7 5.7 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Ribosomal_L39 PF00832.15 gi|302348925|ref|YP_003816563.1| - 1.2e-19 69.5 7.5 1.4e-19 69.2 5.2 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|302348926|ref|YP_003816564.1| - 1.1e-11 44.2 0.8 1.3e-11 43.9 0.4 1.3 1 1 0 1 1 1 1 Ribosomal protein L31e Lsm_C PF14894.1 gi|302348926|ref|YP_003816564.1| - 0.092 12.2 0.8 0.88 9.1 0.0 2.4 2 1 1 3 3 3 0 Lsm C-terminal eIF-6 PF01912.13 gi|302348927|ref|YP_003816565.1| - 6.3e-70 234.3 5.2 7.7e-70 234.0 3.6 1.1 1 0 0 1 1 1 1 eIF-6 family Beta_helix PF13229.1 gi|302348927|ref|YP_003816565.1| - 2.7 7.7 7.8 0.21 11.3 0.7 2.3 3 0 0 3 3 3 0 Right handed beta helix region pRN1_helical PF13010.1 gi|302348928|ref|YP_003816566.1| - 0.0098 15.5 0.0 0.045 13.3 0.0 1.9 2 1 0 2 2 2 1 Primase helical domain DASH_Dad4 PF08650.5 gi|302348928|ref|YP_003816566.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 DASH complex subunit Dad4 Thy1 PF02511.10 gi|302348929|ref|YP_003816567.1| - 1.2e-57 194.3 0.5 1.7e-57 193.8 0.3 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein RNA_binding PF01877.12 gi|302348930|ref|YP_003816568.1| - 1.6e-22 79.7 0.4 2.6e-22 79.0 0.1 1.5 1 1 1 2 2 2 1 RNA binding CCDC92 PF14916.1 gi|302348930|ref|YP_003816568.1| - 0.061 12.9 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Coiled-coil domain of unknown function Ribosomal_L15e PF00827.12 gi|302348931|ref|YP_003816569.1| - 3.6e-71 238.6 3.6 4.8e-71 238.2 2.5 1.2 1 0 0 1 1 1 1 Ribosomal L15 Brix PF04427.13 gi|302348933|ref|YP_003816571.1| - 6.4e-17 61.8 0.0 8.1e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 Brix domain Ribosomal_L37ae PF01780.14 gi|302348934|ref|YP_003816572.1| - 2.3e-28 97.8 3.9 2.6e-28 97.7 2.7 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|302348934|ref|YP_003816572.1| - 4.2e-07 29.6 0.9 5.8e-07 29.2 0.6 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|302348934|ref|YP_003816572.1| - 0.00034 20.1 0.5 0.00034 20.1 0.3 1.5 2 0 0 2 2 2 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|302348934|ref|YP_003816572.1| - 0.00038 19.7 3.8 0.0098 15.2 0.4 1.8 1 1 1 2 2 2 2 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|302348934|ref|YP_003816572.1| - 0.0052 17.0 0.2 0.0077 16.5 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|302348934|ref|YP_003816572.1| - 0.02 14.0 1.5 0.87 8.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|302348934|ref|YP_003816572.1| - 0.022 14.7 0.3 0.92 9.5 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|302348934|ref|YP_003816572.1| - 0.024 14.0 1.2 0.36 10.3 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Elf1 PF05129.8 gi|302348934|ref|YP_003816572.1| - 0.026 14.1 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like CpXC PF14353.1 gi|302348934|ref|YP_003816572.1| - 0.027 14.4 0.8 0.091 12.7 0.1 1.8 1 1 1 2 2 2 0 CpXC protein Prim_Zn_Ribbon PF08273.7 gi|302348934|ref|YP_003816572.1| - 0.03 14.3 2.6 0.045 13.8 1.8 1.3 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF1610 PF07754.6 gi|302348934|ref|YP_003816572.1| - 0.065 13.3 3.5 0.73 9.9 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF4379 PF14311.1 gi|302348934|ref|YP_003816572.1| - 0.1 12.4 3.2 0.45 10.3 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) FdhE PF04216.7 gi|302348934|ref|YP_003816572.1| - 0.14 11.8 0.3 0.16 11.6 0.2 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-H2C2_2 PF13465.1 gi|302348934|ref|YP_003816572.1| - 0.16 12.3 0.7 2.2 8.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain UPF0547 PF10571.4 gi|302348934|ref|YP_003816572.1| - 0.27 10.9 3.5 7.6 6.3 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|302348934|ref|YP_003816572.1| - 1.1 8.8 3.6 9.5 5.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.1 gi|302348934|ref|YP_003816572.1| - 1.2 8.4 7.0 0.5 9.7 0.9 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_5 PF13719.1 gi|302348934|ref|YP_003816572.1| - 1.4 8.5 5.2 7.9 6.1 3.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|302348934|ref|YP_003816572.1| - 2.5 7.8 5.2 16 5.3 3.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain RNase_PH PF01138.16 gi|302348935|ref|YP_003816573.1| - 1.7e-30 106.0 0.0 2.5e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|302348935|ref|YP_003816573.1| - 8.6e-13 48.0 0.1 2e-12 46.8 0.1 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|302348936|ref|YP_003816574.1| - 9.7e-37 126.2 0.0 1.5e-36 125.6 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|302348936|ref|YP_003816574.1| - 7.2e-11 41.8 0.5 1.3e-10 40.9 0.4 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Pinin_SDK_N PF04697.8 gi|302348936|ref|YP_003816574.1| - 0.041 13.9 0.5 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 pinin/SDK conserved region KH_1 PF00013.24 gi|302348937|ref|YP_003816575.1| - 7.8e-09 35.0 2.8 1.7e-08 33.9 1.8 1.7 1 1 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|302348937|ref|YP_003816575.1| - 2.2e-06 27.1 0.7 4.6e-06 26.1 0.3 1.6 1 1 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|302348937|ref|YP_003816575.1| - 0.0001 21.8 1.0 0.00021 20.8 0.1 2.0 2 0 0 2 2 2 1 KH domain S1 PF00575.18 gi|302348937|ref|YP_003816575.1| - 0.0059 16.6 0.1 0.042 13.9 0.0 2.5 2 1 0 2 2 2 1 S1 RNA binding domain SBDS PF01172.13 gi|302348938|ref|YP_003816576.1| - 1.1e-25 89.2 0.4 3.6e-25 87.5 0.6 1.7 2 0 0 2 2 2 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|302348938|ref|YP_003816576.1| - 3.1e-20 72.1 0.0 6.2e-20 71.1 0.0 1.5 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.19 gi|302348938|ref|YP_003816576.1| - 0.0007 19.4 0.1 0.0021 17.9 0.0 1.7 2 0 0 2 2 2 1 Elongation factor G C-terminus Proteasome PF00227.21 gi|302348939|ref|YP_003816577.1| - 6e-55 185.4 0.0 7.9e-55 185.0 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|302348939|ref|YP_003816577.1| - 1e-11 43.9 0.7 2.3e-11 42.7 0.2 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature Ribosomal_L24e PF01246.15 gi|302348940|ref|YP_003816578.1| - 1.3e-18 66.5 0.7 1.5e-18 66.3 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|302348940|ref|YP_003816578.1| - 0.016 14.8 2.2 0.029 14.0 1.5 1.5 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.13 gi|302348940|ref|YP_003816578.1| - 0.022 14.5 0.1 0.043 13.7 0.1 1.5 1 1 0 1 1 1 0 MYND finger Ecl1 PF12855.2 gi|302348940|ref|YP_003816578.1| - 0.029 13.6 0.1 0.11 11.8 0.1 1.8 1 1 0 1 1 1 0 Life-span regulatory factor DUF2175 PF09943.4 gi|302348940|ref|YP_003816578.1| - 0.045 13.8 0.1 0.048 13.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) LIM PF00412.17 gi|302348940|ref|YP_003816578.1| - 0.069 13.2 0.1 0.09 12.8 0.1 1.2 1 0 0 1 1 1 0 LIM domain Ta0938 PF11494.3 gi|302348940|ref|YP_003816578.1| - 0.092 12.8 0.0 0.098 12.7 0.0 1.1 1 0 0 1 1 1 0 Ta0938 zf-ribbon_3 PF13248.1 gi|302348940|ref|YP_003816578.1| - 0.2 10.9 1.1 0.32 10.2 0.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-HIT PF04438.11 gi|302348940|ref|YP_003816578.1| - 0.2 11.3 4.9 1.6 8.4 3.4 1.9 1 1 0 1 1 1 0 HIT zinc finger DUF2116 PF09889.4 gi|302348940|ref|YP_003816578.1| - 0.7 9.7 3.2 12 5.7 2.2 2.1 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF2256 PF10013.4 gi|302348940|ref|YP_003816578.1| - 0.82 9.4 10.2 3.1 7.6 0.2 3.1 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) Cation_efflux PF01545.16 gi|302348941|ref|YP_003816579.1| - 1.5e-15 57.0 4.6 1.8e-15 56.7 3.2 1.1 1 0 0 1 1 1 1 Cation efflux family MARVEL PF01284.18 gi|302348941|ref|YP_003816579.1| - 0.15 11.8 4.2 0.081 12.7 0.7 2.0 1 1 1 2 2 2 0 Membrane-associating domain Bac_Ubq_Cox PF01654.12 gi|302348942|ref|YP_003816580.1| - 2.3e-13 49.3 23.0 2.3e-13 49.3 15.9 2.3 2 1 0 2 2 2 1 Bacterial Cytochrome Ubiquinol Oxidase ODV-E18 PF10717.4 gi|302348942|ref|YP_003816580.1| - 0.0095 15.3 0.3 0.0095 15.3 0.2 2.0 2 0 0 2 2 2 1 Occlusion-derived virus envelope protein ODV-E18 Bac_Ubq_Cox PF01654.12 gi|302348943|ref|YP_003816581.1| - 1.6e-60 204.8 34.2 1.5e-59 201.5 23.7 2.2 1 1 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase tRNA-synt_1 PF00133.17 gi|302348946|ref|YP_003816584.1| - 3.2e-62 210.3 0.9 1.3e-46 158.8 0.0 3.3 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|302348946|ref|YP_003816584.1| - 2.4e-27 95.5 0.0 4e-12 45.5 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|302348946|ref|YP_003816584.1| - 3.7e-22 78.7 0.3 7.5e-22 77.7 0.2 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|302348946|ref|YP_003816584.1| - 6.1e-12 45.2 0.0 1.1e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|302348946|ref|YP_003816584.1| - 5.4e-09 35.5 0.0 1.8e-05 23.9 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|302348946|ref|YP_003816584.1| - 0.04 12.5 0.0 0.33 9.5 0.0 2.6 3 1 1 4 4 4 0 tRNA synthetases class I (K) HD_3 PF13023.1 gi|302348947|ref|YP_003816585.1| - 2.8e-15 56.4 0.0 4.7e-15 55.7 0.0 1.3 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|302348947|ref|YP_003816585.1| - 5.8e-08 32.7 0.0 7.9e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|302348947|ref|YP_003816585.1| - 1.3e-05 24.5 0.1 2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 HDOD domain DUF763 PF05559.6 gi|302348948|ref|YP_003816586.1| - 2.6e-95 319.0 0.0 3.1e-95 318.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH_5 PF14520.1 gi|302348948|ref|YP_003816586.1| - 0.014 15.5 0.1 0.21 11.7 0.1 2.8 2 1 0 2 2 2 0 Helix-hairpin-helix domain HHH PF00633.18 gi|302348948|ref|YP_003816586.1| - 0.017 14.8 0.0 0.042 13.5 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif HRDC PF00570.18 gi|302348948|ref|YP_003816586.1| - 0.92 9.2 0.0 0.92 9.2 0.0 2.5 3 0 0 3 3 3 0 HRDC domain Metallophos_2 PF12850.2 gi|302348949|ref|YP_003816587.1| - 3.4e-15 56.2 0.0 4.1e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|302348949|ref|YP_003816587.1| - 2.9e-08 33.2 0.1 6e-08 32.1 0.1 1.8 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|302348949|ref|YP_003816587.1| - 4.2e-06 26.3 2.3 0.0002 20.8 1.6 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase UPF0047 PF01894.12 gi|302348950|ref|YP_003816588.1| - 6.4e-34 116.2 0.0 7.7e-34 116.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Luciferase_N PF05295.6 gi|302348950|ref|YP_003816588.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Luciferase/LBP N-terminal domain RibD_C PF01872.12 gi|302348951|ref|YP_003816589.1| - 6.6e-44 149.9 0.0 7.5e-44 149.7 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain ATP_sub_h PF10775.4 gi|302348951|ref|YP_003816589.1| - 0.14 11.8 0.0 0.47 10.2 0.0 1.8 2 0 0 2 2 2 0 ATP synthase complex subunit h Radical_SAM PF04055.16 gi|302348952|ref|YP_003816590.1| - 5.3e-19 68.9 1.1 1.3e-18 67.7 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|302348952|ref|YP_003816590.1| - 5e-09 36.2 0.4 1.7e-08 34.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|302348952|ref|YP_003816590.1| - 6e-07 29.6 1.0 1.8e-06 28.1 0.0 2.1 1 1 1 2 2 2 1 4Fe-4S single cluster domain Thioredoxin PF00085.15 gi|302348953|ref|YP_003816591.1| - 9.8e-20 70.1 0.0 1.2e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|302348953|ref|YP_003816591.1| - 9.2e-07 29.0 0.1 2.1e-05 24.6 0.1 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|302348953|ref|YP_003816591.1| - 1.9e-05 24.7 0.2 0.00082 19.4 0.0 2.3 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|302348953|ref|YP_003816591.1| - 3.1e-05 23.9 0.0 4.4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|302348953|ref|YP_003816591.1| - 0.0019 17.8 0.3 0.0082 15.8 0.1 1.7 1 1 1 2 2 2 1 AhpC/TSA family Redoxin PF08534.5 gi|302348953|ref|YP_003816591.1| - 0.0036 16.8 0.9 1 8.9 0.0 2.1 1 1 0 2 2 2 2 Redoxin Thioredoxin_9 PF14595.1 gi|302348953|ref|YP_003816591.1| - 0.0064 16.0 0.0 0.0086 15.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|302348953|ref|YP_003816591.1| - 0.0071 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.6 gi|302348953|ref|YP_003816591.1| - 0.072 13.0 0.0 0.3 10.9 0.0 1.9 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE PGM_PMM_I PF02878.11 gi|302348954|ref|YP_003816592.1| - 1.3e-30 105.6 0.0 2.9e-30 104.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|302348954|ref|YP_003816592.1| - 2.6e-20 72.7 0.0 6.1e-20 71.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|302348954|ref|YP_003816592.1| - 9.1e-12 44.8 0.1 7.5e-11 41.8 0.1 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|302348954|ref|YP_003816592.1| - 0.0019 18.2 0.0 0.01 15.8 0.0 2.1 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III QRPTase_C PF01729.14 gi|302348956|ref|YP_003816594.1| - 4e-19 68.7 0.0 6e-19 68.2 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|302348956|ref|YP_003816594.1| - 0.012 15.3 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain KaiC PF06745.8 gi|302348958|ref|YP_003816596.1| - 1.8e-55 187.5 0.0 2.1e-55 187.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|302348958|ref|YP_003816596.1| - 1e-11 44.6 0.0 1.6e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|302348958|ref|YP_003816596.1| - 3.3e-08 32.2 0.0 4.6e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|302348958|ref|YP_003816596.1| - 1.1e-06 27.9 0.0 1.5e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|302348958|ref|YP_003816596.1| - 2.1e-05 23.9 0.0 7.2e-05 22.2 0.0 2.0 2 1 1 3 3 3 1 IstB-like ATP binding protein Rad51 PF08423.6 gi|302348958|ref|YP_003816596.1| - 9.8e-05 21.3 0.0 0.00017 20.5 0.0 1.4 1 1 0 1 1 1 1 Rad51 AAA_22 PF13401.1 gi|302348958|ref|YP_003816596.1| - 0.0001 22.4 0.0 0.00016 21.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|302348958|ref|YP_003816596.1| - 0.00034 20.1 0.0 0.00078 18.9 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain DnaB_C PF03796.10 gi|302348958|ref|YP_003816596.1| - 0.0028 16.5 0.0 0.004 16.0 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain MEDS PF14417.1 gi|302348958|ref|YP_003816596.1| - 0.0029 16.6 0.1 0.0041 16.1 0.0 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PhoH PF02562.11 gi|302348958|ref|YP_003816596.1| - 0.0033 16.6 0.0 0.0057 15.9 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein DUF2075 PF09848.4 gi|302348958|ref|YP_003816596.1| - 0.0039 16.2 0.0 0.0047 15.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) PAXNEB PF05625.6 gi|302348958|ref|YP_003816596.1| - 0.0042 15.9 0.0 0.0069 15.2 0.0 1.2 1 0 0 1 1 1 1 PAXNEB protein AAA_19 PF13245.1 gi|302348958|ref|YP_003816596.1| - 0.0062 16.2 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|302348958|ref|YP_003816596.1| - 0.0076 16.1 0.1 0.013 15.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|302348958|ref|YP_003816596.1| - 0.014 15.5 0.1 0.025 14.7 0.1 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|302348958|ref|YP_003816596.1| - 0.023 13.5 0.0 0.033 13.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|302348958|ref|YP_003816596.1| - 0.031 13.7 0.0 0.04 13.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF643 PF04867.7 gi|302348958|ref|YP_003816596.1| - 0.037 14.4 0.8 5.2 7.5 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF643) AAA_24 PF13479.1 gi|302348958|ref|YP_003816596.1| - 0.047 13.2 0.2 0.082 12.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|302348958|ref|YP_003816596.1| - 0.048 13.3 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_31 PF13614.1 gi|302348958|ref|YP_003816596.1| - 0.082 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|302348958|ref|YP_003816596.1| - 0.083 12.3 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase NACHT PF05729.7 gi|302348958|ref|YP_003816596.1| - 0.13 11.9 0.1 0.33 10.6 0.0 1.8 1 1 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.21 gi|302348958|ref|YP_003816596.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_33 PF13671.1 gi|302348958|ref|YP_003816596.1| - 0.14 12.0 0.0 0.3 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|302348958|ref|YP_003816596.1| - 0.17 12.7 0.5 0.4 11.5 0.4 1.8 1 1 0 1 1 1 0 AAA domain GTP_EFTU_D2 PF03144.20 gi|302348958|ref|YP_003816596.1| - 0.26 11.4 1.4 0.3 11.2 0.1 1.8 2 0 0 2 2 1 0 Elongation factor Tu domain 2 AdoMet_Synthase PF01941.14 gi|302348959|ref|YP_003816597.1| - 8.6e-170 564.4 0.1 9.8e-170 564.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF460 PF04312.8 gi|302348960|ref|YP_003816598.1| - 1.2e-41 141.4 0.1 3.7e-41 139.8 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) Atg14 PF10186.4 gi|302348960|ref|YP_003816598.1| - 0.0062 15.5 6.1 0.01 14.7 4.2 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 DUF904 PF06005.7 gi|302348960|ref|YP_003816598.1| - 0.04 14.1 0.5 0.04 14.1 0.3 3.8 4 0 0 4 4 3 0 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|302348960|ref|YP_003816598.1| - 0.05 13.5 6.1 1.1 9.2 0.8 2.9 2 0 0 2 2 2 0 bZIP transcription factor Snapin_Pallidin PF14712.1 gi|302348960|ref|YP_003816598.1| - 0.064 13.5 0.5 0.064 13.5 0.4 3.2 3 0 0 3 3 2 0 Snapin/Pallidin AAA_13 PF13166.1 gi|302348960|ref|YP_003816598.1| - 0.12 10.8 9.1 0.18 10.2 6.3 1.2 1 0 0 1 1 1 0 AAA domain IncA PF04156.9 gi|302348960|ref|YP_003816598.1| - 0.21 11.1 23.4 0.19 11.2 13.1 2.3 1 1 1 2 2 2 0 IncA protein TBPIP PF07106.8 gi|302348960|ref|YP_003816598.1| - 0.85 9.1 12.2 0.51 9.8 3.8 2.8 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF342 PF03961.8 gi|302348960|ref|YP_003816598.1| - 1.1 7.6 12.9 3.9 5.7 5.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF342) EMP24_GP25L PF01105.19 gi|302348960|ref|YP_003816598.1| - 2.4 7.8 7.5 4.5e+02 0.4 5.2 2.7 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD AAA_23 PF13476.1 gi|302348960|ref|YP_003816598.1| - 3.5 7.8 9.9 7.2 6.8 6.9 1.5 1 0 0 1 1 1 0 AAA domain Pox_A_type_inc PF04508.7 gi|302348960|ref|YP_003816598.1| - 4.6 7.2 6.4 17 5.4 0.1 3.9 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat DUF4140 PF13600.1 gi|302348960|ref|YP_003816598.1| - 5 7.6 10.1 1.7 9.1 1.5 3.0 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) CCDC-167 PF15188.1 gi|302348960|ref|YP_003816598.1| - 6.3 6.8 10.5 3.8 7.5 0.4 2.8 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 DivIC PF04977.10 gi|302348960|ref|YP_003816598.1| - 9.4 5.7 12.4 0.68 9.4 0.4 3.1 2 1 1 3 3 3 0 Septum formation initiator RIO1 PF01163.17 gi|302348961|ref|YP_003816599.1| - 3.1e-36 124.5 0.0 4.4e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|302348961|ref|YP_003816599.1| - 1.3e-07 31.5 0.1 6.8e-07 29.2 0.0 2.2 2 1 0 2 2 2 1 Rio2, N-terminal APH PF01636.18 gi|302348961|ref|YP_003816599.1| - 4.8e-07 29.7 0.2 0.0014 18.4 0.1 2.5 2 1 0 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|302348961|ref|YP_003816599.1| - 4.2e-06 25.9 0.0 9e-06 24.8 0.0 1.5 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|302348961|ref|YP_003816599.1| - 5.7e-06 25.6 0.0 1e-05 24.8 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain HTH_20 PF12840.2 gi|302348962|ref|YP_003816600.1| - 6.4e-11 41.8 0.0 8.7e-11 41.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|302348962|ref|YP_003816600.1| - 5.3e-09 35.6 0.1 7.7e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|302348962|ref|YP_003816600.1| - 8.2e-07 28.3 0.5 1.2e-06 27.7 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|302348962|ref|YP_003816600.1| - 5.5e-06 25.9 0.0 8.4e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|302348962|ref|YP_003816600.1| - 1.7e-05 24.3 0.0 2.4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|302348962|ref|YP_003816600.1| - 5e-05 23.2 0.0 7.2e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|302348962|ref|YP_003816600.1| - 0.0003 20.4 0.1 0.00044 19.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|302348962|ref|YP_003816600.1| - 0.00069 19.5 0.0 0.0017 18.2 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|302348962|ref|YP_003816600.1| - 0.0031 17.2 0.0 0.0042 16.8 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|302348962|ref|YP_003816600.1| - 0.0061 16.8 0.0 0.0092 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Stk19 PF10494.4 gi|302348962|ref|YP_003816600.1| - 0.0081 15.5 0.1 0.0092 15.3 0.1 1.1 1 0 0 1 1 1 1 Serine-threonine protein kinase 19 HTH_IclR PF09339.5 gi|302348962|ref|YP_003816600.1| - 0.015 14.8 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|302348962|ref|YP_003816600.1| - 0.017 15.2 0.1 0.024 14.7 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|302348962|ref|YP_003816600.1| - 0.058 13.0 0.1 0.091 12.4 0.1 1.3 1 0 0 1 1 1 0 HTH domain Nitrophorin PF02087.10 gi|302348962|ref|YP_003816600.1| - 0.072 12.8 0.0 0.087 12.5 0.0 1.1 1 0 0 1 1 1 0 Nitrophorin TFIIE_alpha PF02002.12 gi|302348962|ref|YP_003816600.1| - 0.12 11.8 0.1 0.19 11.2 0.0 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_CodY PF08222.6 gi|302348962|ref|YP_003816600.1| - 0.22 10.9 1.3 0.35 10.2 0.1 1.8 2 0 0 2 2 2 0 CodY helix-turn-helix domain MFS_1 PF07690.11 gi|302348964|ref|YP_003816602.1| - 6.6e-42 143.4 58.6 4.5e-32 111.1 22.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|302348964|ref|YP_003816602.1| - 3.5e-14 52.2 14.1 3.5e-14 52.2 9.8 2.9 1 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|302348964|ref|YP_003816602.1| - 1.9e-05 23.2 40.9 0.00045 18.7 4.3 4.1 2 1 1 4 4 4 3 MFS/sugar transport protein NPCBM_assoc PF10633.4 gi|302348965|ref|YP_003816603.1| - 2.1e-05 24.4 1.1 0.22 11.5 0.0 4.0 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF1641 PF07849.6 gi|302348966|ref|YP_003816604.1| - 8.9e-14 50.8 0.9 2e-13 49.7 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.9 gi|302348967|ref|YP_003816605.1| - 1e-10 41.8 0.0 1.9e-10 40.9 0.0 1.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|302348967|ref|YP_003816605.1| - 1.5e-05 25.2 0.0 0.00062 20.1 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|302348967|ref|YP_003816605.1| - 0.0067 15.3 0.0 3.4 6.4 0.0 3.6 4 0 0 4 4 4 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|302348967|ref|YP_003816605.1| - 0.035 12.7 0.1 0.062 11.9 0.1 1.4 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|302348967|ref|YP_003816605.1| - 0.075 12.8 0.2 4.7 6.9 0.1 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|302348967|ref|YP_003816605.1| - 0.087 12.8 0.1 0.87 9.6 0.1 2.4 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain DUF1641 PF07849.6 gi|302348968|ref|YP_003816606.1| - 2.3e-07 30.3 0.6 5.1e-07 29.1 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) tRNA-synt_His PF13393.1 gi|302348968|ref|YP_003816606.1| - 0.016 14.2 2.7 0.084 11.9 0.3 2.0 1 1 1 2 2 2 0 Histidyl-tRNA synthetase RP-C_C PF11800.3 gi|302348968|ref|YP_003816606.1| - 0.17 11.5 0.1 0.17 11.5 0.1 1.6 2 0 0 2 2 2 0 Replication protein C C-terminal region PTS_EIIA_2 PF00359.17 gi|302348968|ref|YP_003816606.1| - 0.18 11.4 3.0 11 5.7 0.0 2.9 1 1 2 3 3 3 0 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AAA_22 PF13401.1 gi|302348968|ref|YP_003816606.1| - 0.41 10.7 2.2 0.75 9.9 1.5 1.6 1 1 0 1 1 1 0 AAA domain L27 PF02828.11 gi|302348968|ref|YP_003816606.1| - 2.2 8.0 4.7 1.8 8.3 0.0 2.7 3 1 0 3 3 3 0 L27 domain Pyr_redox_2 PF07992.9 gi|302348969|ref|YP_003816607.1| - 1.7e-10 41.1 0.0 2.8e-10 40.4 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|302348969|ref|YP_003816607.1| - 3.6e-05 24.0 0.1 0.091 13.1 0.0 2.9 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|302348969|ref|YP_003816607.1| - 5.2e-05 22.3 0.6 0.0035 16.2 0.1 2.5 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|302348969|ref|YP_003816607.1| - 0.0002 21.1 0.1 0.27 11.0 0.0 2.6 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|302348969|ref|YP_003816607.1| - 0.00089 19.2 0.1 0.002 18.1 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|302348969|ref|YP_003816607.1| - 0.0012 17.9 0.0 0.0031 16.6 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|302348969|ref|YP_003816607.1| - 0.0019 16.7 0.0 0.021 13.3 0.0 2.2 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|302348969|ref|YP_003816607.1| - 0.0034 16.2 0.0 0.0054 15.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|302348969|ref|YP_003816607.1| - 0.0052 15.7 0.2 0.018 14.0 0.1 1.8 1 1 0 2 2 2 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|302348969|ref|YP_003816607.1| - 0.0054 15.8 0.1 0.05 12.6 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase ApbA PF02558.11 gi|302348969|ref|YP_003816607.1| - 0.023 14.1 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA RBD PF02196.10 gi|302348969|ref|YP_003816607.1| - 0.053 13.2 0.0 0.93 9.2 0.0 2.3 2 0 0 2 2 2 0 Raf-like Ras-binding domain GIDA PF01134.17 gi|302348969|ref|YP_003816607.1| - 0.061 12.1 1.0 4.4 6.0 0.2 2.2 1 1 1 2 2 2 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|302348969|ref|YP_003816607.1| - 0.078 13.0 0.0 4.7 7.2 0.0 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|302348969|ref|YP_003816607.1| - 0.14 11.2 0.0 0.28 10.2 0.0 1.4 1 0 0 1 1 1 0 Thi4 family Trp_halogenase PF04820.9 gi|302348969|ref|YP_003816607.1| - 0.15 10.6 0.2 0.3 9.6 0.0 1.5 2 0 0 2 2 2 0 Tryptophan halogenase DrsE_2 PF13686.1 gi|302348970|ref|YP_003816608.1| - 8e-22 77.6 0.4 3.5e-21 75.5 0.2 1.8 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|302348970|ref|YP_003816608.1| - 2.7e-06 27.4 0.0 7.5e-06 25.9 0.0 1.6 1 1 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.5 gi|302348970|ref|YP_003816608.1| - 0.032 13.6 0.4 2.2 7.8 0.0 2.5 2 0 0 2 2 2 0 Anti-repressor SinI AAA_assoc_C PF09821.4 gi|302348971|ref|YP_003816609.1| - 1.8e-12 47.5 0.0 2e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 C-terminal AAA-associated domain HemN_C PF06969.11 gi|302348971|ref|YP_003816609.1| - 0.095 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain RNA_pol_Rpb5_C PF01191.14 gi|302348972|ref|YP_003816610.1| - 1.7e-25 88.3 0.0 1.9e-25 88.2 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.23 gi|302348973|ref|YP_003816611.1| - 2.5e-124 414.9 0.1 3.4e-124 414.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|302348973|ref|YP_003816611.1| - 4.4e-52 175.9 0.0 7e-52 175.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|302348973|ref|YP_003816611.1| - 1.6e-29 102.6 0.1 2.8e-29 101.8 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.15 gi|302348973|ref|YP_003816611.1| - 4.3e-27 94.2 0.0 1.5e-26 92.4 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.11 gi|302348973|ref|YP_003816611.1| - 1.2e-26 92.2 0.0 3.4e-26 90.7 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.8 gi|302348973|ref|YP_003816611.1| - 1.5e-15 56.7 0.2 4.1e-15 55.3 0.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|302348973|ref|YP_003816611.1| - 9.4e-12 44.7 1.2 9.4e-12 44.7 0.8 2.3 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.7 gi|302348974|ref|YP_003816612.1| - 4.7e-70 236.4 0.0 2.8e-69 233.9 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|302348974|ref|YP_003816612.1| - 8.3e-68 227.5 0.0 1.7e-67 226.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|302348974|ref|YP_003816612.1| - 1.9e-38 131.6 0.0 3.8e-38 130.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|302348974|ref|YP_003816612.1| - 2.7e-31 108.8 0.1 5.2e-31 107.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|302348974|ref|YP_003816612.1| - 3.7e-31 107.0 0.0 9.2e-31 105.7 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 zf-ribbon_3 PF13248.1 gi|302348974|ref|YP_003816612.1| - 0.31 10.3 8.4 0.24 10.6 0.5 3.1 2 1 0 2 2 2 0 zinc-ribbon domain Cullin PF00888.17 gi|302348974|ref|YP_003816612.1| - 0.31 9.5 0.0 0.5 8.8 0.0 1.2 1 0 0 1 1 1 0 Cullin family UPF0547 PF10571.4 gi|302348974|ref|YP_003816612.1| - 0.46 10.2 3.9 0.55 9.9 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|302348974|ref|YP_003816612.1| - 0.95 9.1 3.5 2 8.1 0.0 2.8 3 0 0 3 3 3 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|302348974|ref|YP_003816612.1| - 4.4 7.3 6.7 2 8.4 0.1 2.9 3 0 0 3 3 3 0 Zinc ribbon domain RNA_pol_Rpb1_5 PF04998.12 gi|302348975|ref|YP_003816613.1| - 1.4e-50 172.0 0.3 1.7e-50 171.8 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 BacteriocIIc_cy PF12173.3 gi|302348975|ref|YP_003816613.1| - 0.048 13.7 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like LsmAD PF06741.8 gi|302348975|ref|YP_003816613.1| - 0.48 10.5 0.1 0.48 10.5 0.0 3.7 4 1 0 4 4 4 0 LsmAD domain Ribosomal_L7Ae PF01248.21 gi|302348976|ref|YP_003816614.1| - 3e-19 68.3 0.0 3.4e-19 68.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_5 PF13184.1 gi|302348977|ref|YP_003816615.1| - 6.1e-13 48.3 4.5 1.9e-11 43.5 0.3 2.3 2 0 0 2 2 2 2 NusA-like KH domain KH_2 PF07650.12 gi|302348977|ref|YP_003816615.1| - 8e-13 47.7 5.1 1.2e-07 31.1 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_4 PF13083.1 gi|302348977|ref|YP_003816615.1| - 2.9e-11 42.8 2.0 2.4e-05 23.8 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|302348977|ref|YP_003816615.1| - 6.3e-07 28.9 1.6 0.003 17.1 0.0 2.8 3 0 0 3 3 3 2 KH domain DUF2874 PF11396.3 gi|302348977|ref|YP_003816615.1| - 0.018 15.0 0.9 0.037 13.9 0.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2874) HAP1_N PF04849.8 gi|302348977|ref|YP_003816615.1| - 0.03 13.2 0.0 0.032 13.2 0.0 1.0 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Ribosom_S12_S23 PF00164.20 gi|302348978|ref|YP_003816616.1| - 2.2e-37 127.1 0.7 2.6e-37 126.9 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 DNase-RNase PF02577.9 gi|302348979|ref|YP_003816617.1| - 1.7e-08 33.8 0.0 2.3e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Bifunctional nuclease Ribosomal_S7 PF00177.16 gi|302348980|ref|YP_003816618.1| - 3.4e-46 156.4 0.1 4e-46 156.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|302348981|ref|YP_003816619.1| - 2.5e-57 193.3 0.0 3.5e-57 192.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|302348981|ref|YP_003816619.1| - 8.3e-30 102.8 0.5 3.6e-29 100.8 0.1 2.3 2 1 1 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|302348981|ref|YP_003816619.1| - 2.4e-19 69.1 3.5 5.6e-19 68.0 2.4 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|302348981|ref|YP_003816619.1| - 2.8e-08 33.2 1.7 5.8e-08 32.2 1.2 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|302348981|ref|YP_003816619.1| - 1.4e-05 25.0 0.1 4.5e-05 23.3 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|302348981|ref|YP_003816619.1| - 0.00016 22.1 0.1 0.00079 19.9 0.1 2.1 1 1 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|302348981|ref|YP_003816619.1| - 0.023 14.0 0.3 0.15 11.4 0.0 2.1 2 0 0 2 2 2 0 Ras family Dioxygenase_N PF04444.9 gi|302348981|ref|YP_003816619.1| - 0.026 14.5 0.0 0.065 13.2 0.0 1.6 1 0 0 1 1 1 0 Catechol dioxygenase N terminus Septin PF00735.13 gi|302348981|ref|YP_003816619.1| - 0.044 12.7 0.0 0.096 11.6 0.0 1.5 1 1 0 1 1 1 0 Septin Gtr1_RagA PF04670.7 gi|302348981|ref|YP_003816619.1| - 0.058 12.5 0.0 0.14 11.2 0.0 1.6 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region GH97_C PF14509.1 gi|302348981|ref|YP_003816619.1| - 0.065 13.3 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Glycosyl-hydrolase 97 C-terminal, oligomerisation Ribosomal_S10 PF00338.17 gi|302348982|ref|YP_003816620.1| - 9.9e-33 111.8 0.1 1.1e-32 111.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NETI PF14044.1 gi|302348982|ref|YP_003816620.1| - 0.13 11.7 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 NETI protein DNA_ligase_A_M PF01068.16 gi|302348983|ref|YP_003816621.1| - 7.2e-58 195.2 0.1 1e-57 194.7 0.1 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|302348983|ref|YP_003816621.1| - 3.7e-45 153.9 0.0 6.3e-45 153.1 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|302348983|ref|YP_003816621.1| - 1.8e-24 85.9 0.0 3.7e-24 84.9 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|302348983|ref|YP_003816621.1| - 0.0017 17.9 2.5 0.019 14.6 0.0 2.9 4 0 0 4 4 4 1 DNA ligase OB-like domain DUF970 PF06153.6 gi|302348983|ref|YP_003816621.1| - 0.032 14.2 0.1 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF970) Rpr2 PF04032.11 gi|302348984|ref|YP_003816622.1| - 5.8e-19 67.7 0.1 6.4e-19 67.6 0.1 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Tnp_zf-ribbon_2 PF13842.1 gi|302348984|ref|YP_003816622.1| - 0.12 12.8 1.7 4.4 7.7 0.0 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon adh_short PF00106.20 gi|302348985|ref|YP_003816623.1| - 7.2e-36 123.6 0.1 1.1e-35 123.0 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|302348985|ref|YP_003816623.1| - 1.2e-32 113.6 0.0 1.4e-32 113.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|302348985|ref|YP_003816623.1| - 4.3e-17 62.3 0.0 7.5e-17 61.5 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|302348985|ref|YP_003816623.1| - 0.00027 20.4 0.0 0.00039 19.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|302348985|ref|YP_003816623.1| - 0.036 13.1 0.3 0.088 11.8 0.0 1.8 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Glyco_trans_2_3 PF13632.1 gi|302348985|ref|YP_003816623.1| - 0.11 12.2 0.0 8.3 6.0 0.0 2.3 2 1 0 2 2 2 0 Glycosyl transferase family group 2 PA PF02225.17 gi|302348985|ref|YP_003816623.1| - 0.13 11.9 0.2 0.4 10.3 0.1 1.9 2 0 0 2 2 2 0 PA domain Eno-Rase_NADH_b PF12242.3 gi|302348985|ref|YP_003816623.1| - 0.15 11.8 2.5 0.17 11.7 0.2 2.0 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Methyltrn_RNA_3 PF02598.12 gi|302348986|ref|YP_003816624.1| - 9.6e-35 120.3 0.0 1.4e-34 119.7 0.0 1.2 1 1 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|302348986|ref|YP_003816624.1| - 0.057 13.2 0.0 0.85 9.4 0.0 2.1 2 0 0 2 2 2 0 SpoU rRNA Methylase family Myosin_TH1 PF06017.8 gi|302348987|ref|YP_003816625.1| - 0.016 14.5 0.1 0.017 14.4 0.1 1.0 1 0 0 1 1 1 0 Myosin tail PEP_mutase PF13714.1 gi|302348988|ref|YP_003816626.1| - 6.2e-65 218.7 1.2 7.4e-65 218.4 0.8 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|302348988|ref|YP_003816626.1| - 2.5e-19 68.8 1.8 3.9e-18 64.9 1.2 2.0 1 1 1 2 2 2 2 Isocitrate lyase family PadR PF03551.9 gi|302348989|ref|YP_003816627.1| - 6.7e-08 32.1 0.0 1.6e-07 30.9 0.0 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family Mrr_N PF14338.1 gi|302348989|ref|YP_003816627.1| - 0.0029 17.6 0.0 0.0066 16.5 0.0 1.7 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_45 PF14947.1 gi|302348989|ref|YP_003816627.1| - 0.0047 16.7 0.1 0.0081 15.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|302348989|ref|YP_003816627.1| - 0.0063 16.2 0.0 0.017 14.8 0.0 1.7 1 0 0 1 1 1 1 MarR family zf-Di19 PF05605.7 gi|302348990|ref|YP_003816628.1| - 0.01 15.9 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.1 gi|302348990|ref|YP_003816628.1| - 0.016 15.5 0.0 0.03 14.6 0.0 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|302348990|ref|YP_003816628.1| - 0.039 14.3 0.0 0.079 13.3 0.0 1.6 1 0 0 1 1 1 0 Zinc finger, C2H2 type Diphthamide_syn PF01866.12 gi|302348991|ref|YP_003816629.1| - 9.4e-69 231.9 0.0 1.1e-68 231.7 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Methyltransf_26 PF13659.1 gi|302348992|ref|YP_003816630.1| - 4.3e-08 33.1 0.0 5.7e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|302348992|ref|YP_003816630.1| - 8.1e-06 26.3 0.0 1.1e-05 25.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|302348992|ref|YP_003816630.1| - 5.4e-05 22.4 0.0 6.8e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|302348992|ref|YP_003816630.1| - 0.00013 21.3 0.0 0.00016 21.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|302348992|ref|YP_003816630.1| - 0.00061 19.4 0.0 0.00075 19.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|302348992|ref|YP_003816630.1| - 0.0015 17.9 0.0 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 ECR1_N PF14382.1 gi|302348993|ref|YP_003816631.1| - 0.00062 18.9 0.2 0.0022 17.2 0.0 2.1 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region zf-ribbon_3 PF13248.1 gi|302348993|ref|YP_003816631.1| - 0.0015 17.6 1.2 0.003 16.6 0.9 1.5 1 0 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|302348993|ref|YP_003816631.1| - 0.0022 17.6 0.4 0.004 16.7 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain EXOSC1 PF10447.4 gi|302348993|ref|YP_003816631.1| - 0.0036 17.2 0.1 0.025 14.5 0.1 2.2 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 HypA PF01155.14 gi|302348993|ref|YP_003816631.1| - 0.021 14.4 0.1 0.039 13.6 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|302348993|ref|YP_003816631.1| - 0.047 13.2 2.0 1 8.9 0.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|302348993|ref|YP_003816631.1| - 0.048 13.4 0.2 0.073 12.9 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|302348993|ref|YP_003816631.1| - 0.053 13.2 0.3 0.081 12.6 0.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.1 gi|302348993|ref|YP_003816631.1| - 0.068 12.8 2.4 1 9.1 0.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|302348993|ref|YP_003816631.1| - 0.087 12.3 2.4 0.18 11.3 1.7 1.5 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain S1 PF00575.18 gi|302348993|ref|YP_003816631.1| - 0.11 12.5 1.3 0.32 11.1 0.0 2.3 3 0 0 3 3 3 0 S1 RNA binding domain zf-FPG_IleRS PF06827.9 gi|302348993|ref|YP_003816631.1| - 0.13 11.8 0.2 11 5.7 0.0 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C2HC5 PF06221.8 gi|302348993|ref|YP_003816631.1| - 0.15 11.8 0.8 0.23 11.2 0.5 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.7 gi|302348993|ref|YP_003816631.1| - 1.3 8.3 7.3 4.1 6.8 0.3 2.6 2 1 1 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|302348993|ref|YP_003816631.1| - 2.1 7.9 4.5 16 5.1 3.0 2.2 1 1 2 3 3 3 0 zinc-ribbon domain DUF2067 PF09840.4 gi|302348994|ref|YP_003816632.1| - 1.2e-20 73.8 1.3 1.4e-20 73.6 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) SUI1 PF01253.17 gi|302348994|ref|YP_003816632.1| - 0.025 14.3 0.1 0.083 12.6 0.0 1.8 2 0 0 2 2 2 0 Translation initiation factor SUI1 Diacid_rec PF05651.8 gi|302348994|ref|YP_003816632.1| - 0.065 12.6 0.5 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Putative sugar diacid recognition RNA_pol_L_2 PF13656.1 gi|302348995|ref|YP_003816633.1| - 6.2e-20 70.4 0.0 7.2e-20 70.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|302348995|ref|YP_003816633.1| - 0.0047 16.0 0.0 0.043 12.9 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF3928 PF13065.1 gi|302348995|ref|YP_003816633.1| - 0.038 14.2 0.1 0.046 13.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3928) cIII PF08134.6 gi|302348995|ref|YP_003816633.1| - 0.051 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 cIII protein family PBP_like PF12727.2 gi|302348997|ref|YP_003816635.1| - 3e-08 32.8 0.0 3.6e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.12 gi|302348998|ref|YP_003816636.1| - 2.6e-52 176.4 0.1 3.9e-52 175.8 0.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.2 gi|302348998|ref|YP_003816636.1| - 1.6e-28 99.0 0.0 3.2e-28 98.0 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoCF_biosynth PF00994.19 gi|302348998|ref|YP_003816636.1| - 9e-25 86.7 0.1 1.7e-24 85.8 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|302348998|ref|YP_003816636.1| - 4e-12 45.9 0.0 1.6e-11 43.9 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|302348998|ref|YP_003816636.1| - 0.0081 15.8 0.0 0.064 12.8 0.0 2.2 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein Fil_haemagg PF05594.9 gi|302348998|ref|YP_003816636.1| - 0.0091 16.3 0.0 0.025 14.9 0.0 1.7 1 0 0 1 1 1 1 Haemagluttinin repeat OpuAC PF04069.7 gi|302348998|ref|YP_003816636.1| - 0.073 12.4 0.0 1.9 7.7 0.0 2.2 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system YjgP_YjgQ PF03739.9 gi|302348998|ref|YP_003816636.1| - 0.13 10.9 0.1 0.21 10.2 0.0 1.2 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family HEM4 PF02602.10 gi|302348999|ref|YP_003816637.1| - 4.8e-29 101.2 0.0 5.7e-29 100.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD CobS_N PF12556.3 gi|302348999|ref|YP_003816637.1| - 0.032 13.6 0.0 0.075 12.4 0.0 1.7 1 0 0 1 1 1 0 Cobaltochelatase CobS subunit N terminal TP_methylase PF00590.15 gi|302349000|ref|YP_003816638.1| - 4.1e-42 144.2 0.1 4.7e-42 144.0 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Porphobil_deam PF01379.15 gi|302349001|ref|YP_003816639.1| - 2.7e-55 186.5 0.0 3.5e-55 186.2 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|302349001|ref|YP_003816639.1| - 8.7e-11 41.7 0.2 1.7e-10 40.8 0.1 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.16 gi|302349002|ref|YP_003816640.1| - 3.2e-64 216.9 0.0 4.1e-64 216.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|302349002|ref|YP_003816640.1| - 5.7e-05 22.2 0.0 8.1e-05 21.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II NIR_SIR_ferr PF03460.12 gi|302349002|ref|YP_003816640.1| - 0.068 12.8 0.0 0.17 11.4 0.0 1.7 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain CRISPR_Cas2 PF09827.4 gi|302349002|ref|YP_003816640.1| - 0.11 12.7 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 CRISPR associated protein Cas2 DUF793 PF05633.6 gi|302349003|ref|YP_003816641.1| - 0.0066 15.2 0.1 0.0066 15.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF793) HD PF01966.17 gi|302349004|ref|YP_003816642.1| - 7.2e-10 38.9 0.9 3.2e-09 36.8 0.2 2.5 3 1 0 3 3 3 1 HD domain HDOD PF08668.7 gi|302349004|ref|YP_003816642.1| - 0.0082 15.4 0.0 0.024 13.9 0.0 1.8 1 0 0 1 1 1 1 HDOD domain bact-PGI_C PF10432.4 gi|302349005|ref|YP_003816643.1| - 1e-24 87.0 0.0 1.5e-24 86.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|302349005|ref|YP_003816643.1| - 2.6e-08 33.5 0.0 6.1e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|302349005|ref|YP_003816643.1| - 6.8e-06 25.8 0.1 2.1e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 SIS domain ICL PF00463.16 gi|302349005|ref|YP_003816643.1| - 0.12 10.5 0.0 0.16 10.1 0.0 1.1 1 0 0 1 1 1 0 Isocitrate lyase family Reo_sigmaC PF04582.7 gi|302349006|ref|YP_003816644.1| - 4e-09 36.1 6.3 1e-05 24.8 0.4 2.0 2 0 0 2 2 2 2 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|302349006|ref|YP_003816644.1| - 8e-06 25.8 11.3 8e-06 25.8 7.8 3.9 1 1 2 4 4 3 1 Autophagy protein 16 (ATG16) GAS PF13851.1 gi|302349006|ref|YP_003816644.1| - 4.6e-05 22.7 43.0 0.00026 20.2 13.2 2.7 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding TMF_DNA_bd PF12329.3 gi|302349006|ref|YP_003816644.1| - 7.5e-05 22.4 7.8 7.5e-05 22.4 5.4 5.3 2 1 2 4 4 4 2 TATA element modulatory factor 1 DNA binding AAA_13 PF13166.1 gi|302349006|ref|YP_003816644.1| - 9.6e-05 21.0 26.0 9.6e-05 21.0 18.0 1.5 1 1 0 1 1 1 1 AAA domain Baculo_PEP_C PF04513.7 gi|302349006|ref|YP_003816644.1| - 0.00025 20.8 17.6 0.00079 19.2 2.9 2.8 1 1 2 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1202 PF06717.6 gi|302349006|ref|YP_003816644.1| - 0.00043 19.6 3.2 0.00043 19.6 2.2 2.8 2 2 1 3 3 3 1 Protein of unknown function (DUF1202) DUF869 PF05911.6 gi|302349006|ref|YP_003816644.1| - 0.00046 18.5 11.1 0.00046 18.5 7.7 2.4 1 1 0 2 2 2 1 Plant protein of unknown function (DUF869) IncA PF04156.9 gi|302349006|ref|YP_003816644.1| - 0.0011 18.6 47.0 0.17 11.4 10.3 3.8 1 1 3 4 4 4 1 IncA protein DUF4527 PF15030.1 gi|302349006|ref|YP_003816644.1| - 0.0014 17.9 1.7 0.0014 17.9 1.2 2.6 1 1 0 2 2 2 1 Protein of unknown function (DUF4527) Spc7 PF08317.6 gi|302349006|ref|YP_003816644.1| - 0.002 16.8 20.9 0.002 16.8 14.5 2.7 1 1 2 3 3 3 1 Spc7 kinetochore protein Mnd1 PF03962.10 gi|302349006|ref|YP_003816644.1| - 0.0023 17.6 34.6 0.0084 15.7 4.3 3.2 1 1 2 3 3 3 2 Mnd1 family FlaC_arch PF05377.6 gi|302349006|ref|YP_003816644.1| - 0.0023 17.7 2.5 0.0023 17.7 1.8 5.2 3 2 2 5 5 3 2 Flagella accessory protein C (FlaC) TBPIP PF07106.8 gi|302349006|ref|YP_003816644.1| - 0.0025 17.3 41.3 0.0093 15.5 8.8 4.0 1 1 3 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Laminin_I PF06008.9 gi|302349006|ref|YP_003816644.1| - 0.0048 16.2 34.3 0.03 13.6 9.2 2.4 1 1 1 2 2 2 2 Laminin Domain I DUF972 PF06156.8 gi|302349006|ref|YP_003816644.1| - 0.0049 17.1 36.8 0.048 13.9 1.9 4.6 1 1 4 5 5 5 2 Protein of unknown function (DUF972) Seryl_tRNA_N PF02403.17 gi|302349006|ref|YP_003816644.1| - 0.0053 16.7 47.1 0.008 16.1 8.6 4.8 2 2 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain AAA_27 PF13514.1 gi|302349006|ref|YP_003816644.1| - 0.0053 14.5 27.0 0.0018 16.0 16.9 1.4 1 1 0 1 1 1 1 AAA domain FliJ PF02050.11 gi|302349006|ref|YP_003816644.1| - 0.0068 16.4 11.8 0.0068 16.4 8.1 3.7 1 1 3 4 4 3 1 Flagellar FliJ protein DUF641 PF04859.7 gi|302349006|ref|YP_003816644.1| - 0.0068 16.1 5.9 0.0068 16.1 4.1 3.3 2 2 1 3 3 2 1 Plant protein of unknown function (DUF641) DUF948 PF06103.6 gi|302349006|ref|YP_003816644.1| - 0.0085 15.9 18.0 0.015 15.1 1.7 4.1 1 1 3 4 4 3 1 Bacterial protein of unknown function (DUF948) FlxA PF14282.1 gi|302349006|ref|YP_003816644.1| - 0.0093 15.8 3.2 0.0093 15.8 2.2 4.2 1 1 5 6 6 5 2 FlxA-like protein DUF3450 PF11932.3 gi|302349006|ref|YP_003816644.1| - 0.01 15.1 2.9 0.01 15.1 2.0 3.1 1 1 2 3 3 2 0 Protein of unknown function (DUF3450) XhlA PF10779.4 gi|302349006|ref|YP_003816644.1| - 0.014 15.3 3.2 0.014 15.3 2.2 4.9 3 2 2 5 5 5 0 Haemolysin XhlA bZIP_1 PF00170.16 gi|302349006|ref|YP_003816644.1| - 0.014 15.2 0.9 0.014 15.2 0.7 7.0 2 2 5 7 7 7 0 bZIP transcription factor Mitofilin PF09731.4 gi|302349006|ref|YP_003816644.1| - 0.022 13.4 31.2 0.038 12.6 21.6 1.4 1 1 0 1 1 1 0 Mitochondrial inner membrane protein PspA_IM30 PF04012.7 gi|302349006|ref|YP_003816644.1| - 0.024 14.0 37.5 0.28 10.4 4.5 3.7 1 1 2 3 3 3 0 PspA/IM30 family MCPsignal PF00015.16 gi|302349006|ref|YP_003816644.1| - 0.042 13.4 10.9 0.56 9.7 2.7 2.2 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain APG6 PF04111.7 gi|302349006|ref|YP_003816644.1| - 0.054 12.5 39.5 0.24 10.4 11.8 3.1 1 1 2 3 3 3 0 Autophagy protein Apg6 FliD_N PF02465.13 gi|302349006|ref|YP_003816644.1| - 0.059 13.7 17.0 0.12 12.7 2.6 3.8 2 2 1 3 3 3 0 Flagellar hook-associated protein 2 N-terminus MbeD_MobD PF04899.7 gi|302349006|ref|YP_003816644.1| - 0.069 13.0 0.0 0.069 13.0 0.0 3.4 2 1 1 3 3 3 0 MbeD/MobD like HOOK PF05622.7 gi|302349006|ref|YP_003816644.1| - 0.075 10.8 39.4 0.075 10.8 14.8 2.4 1 1 1 2 2 2 0 HOOK protein HsbA PF12296.3 gi|302349006|ref|YP_003816644.1| - 0.077 12.8 7.5 2.5 7.9 0.1 3.4 3 1 0 3 3 2 0 Hydrophobic surface binding protein A COG5 PF10392.4 gi|302349006|ref|YP_003816644.1| - 0.088 12.7 20.1 0.75 9.7 0.2 3.9 1 1 2 3 3 3 0 Golgi transport complex subunit 5 SlyX PF04102.7 gi|302349006|ref|YP_003816644.1| - 0.11 12.8 0.6 0.11 12.8 0.4 5.8 2 2 2 5 5 3 0 SlyX Pet20 PF08692.5 gi|302349006|ref|YP_003816644.1| - 0.12 12.2 0.6 0.56 10.1 0.4 2.2 1 1 0 1 1 1 0 Mitochondrial protein Pet20 Syntaxin PF00804.20 gi|302349006|ref|YP_003816644.1| - 0.15 12.2 33.3 2.1 8.5 9.3 4.0 1 1 1 2 2 2 0 Syntaxin WXG100 PF06013.7 gi|302349006|ref|YP_003816644.1| - 0.16 11.9 7.4 0.25 11.3 0.1 3.8 2 2 2 4 4 4 0 Proteins of 100 residues with WXG NPV_P10 PF05531.7 gi|302349006|ref|YP_003816644.1| - 0.17 12.1 20.5 0.069 13.4 3.2 4.2 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF3584 PF12128.3 gi|302349006|ref|YP_003816644.1| - 0.25 8.6 31.3 0.081 10.2 11.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|302349006|ref|YP_003816644.1| - 0.55 10.0 48.4 0.098 12.5 10.5 4.1 1 1 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3142 PF11340.3 gi|302349006|ref|YP_003816644.1| - 0.55 9.8 5.4 0.17 11.5 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3142) Filament PF00038.16 gi|302349006|ref|YP_003816644.1| - 0.73 9.2 36.7 19 4.5 25.5 3.2 1 1 0 1 1 1 0 Intermediate filament protein Laminin_II PF06009.7 gi|302349006|ref|YP_003816644.1| - 0.81 9.4 33.0 0.041 13.6 4.5 4.2 1 1 3 4 4 4 0 Laminin Domain II Hemagglutinin PF00509.13 gi|302349006|ref|YP_003816644.1| - 0.89 7.6 5.1 1.8 6.5 3.6 1.6 1 0 0 1 1 1 0 Haemagglutinin Bacillus_HBL PF05791.6 gi|302349006|ref|YP_003816644.1| - 1.1 8.6 26.9 0.056 12.8 5.4 3.3 1 1 3 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) BLOC1_2 PF10046.4 gi|302349006|ref|YP_003816644.1| - 1.1 9.4 31.8 0.15 12.1 4.6 5.0 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2203 PF09969.4 gi|302349006|ref|YP_003816644.1| - 1.3 9.2 20.4 1.2 9.4 3.6 3.6 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF3452 PF11934.3 gi|302349006|ref|YP_003816644.1| - 1.9 7.8 9.7 0.39 10.0 1.0 3.1 1 1 0 2 2 2 0 Domain of unknown function (DUF3452) Atg14 PF10186.4 gi|302349006|ref|YP_003816644.1| - 2 7.2 40.6 13 4.5 14.9 2.7 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF2968 PF11180.3 gi|302349006|ref|YP_003816644.1| - 2.1 7.6 30.7 0.82 9.0 4.7 3.6 1 1 2 4 4 4 0 Protein of unknown function (DUF2968) DUF812 PF05667.6 gi|302349006|ref|YP_003816644.1| - 2.2 6.7 34.7 3.6 5.9 12.3 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) DUF2935 PF11155.3 gi|302349006|ref|YP_003816644.1| - 2.3 8.3 13.9 0.46 10.5 1.7 3.4 1 1 0 2 2 2 0 Domain of unknown function (DUF2935) DUF4201 PF13870.1 gi|302349006|ref|YP_003816644.1| - 2.4 7.5 45.6 1.4 8.3 5.2 4.0 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) M_domain PF12938.2 gi|302349006|ref|YP_003816644.1| - 2.8 7.6 11.7 1.5e+02 1.9 6.4 2.5 1 1 0 1 1 1 0 M domain of GW182 WEMBL PF05701.6 gi|302349006|ref|YP_003816644.1| - 3.2 6.0 40.5 0.056 11.9 14.0 2.1 1 1 1 2 2 2 0 Weak chloroplast movement under blue light V_ATPase_I PF01496.14 gi|302349006|ref|YP_003816644.1| - 3.2 5.4 28.9 1.2 6.8 8.1 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family TraF_2 PF13729.1 gi|302349006|ref|YP_003816644.1| - 4.1 6.1 6.5 1.5 7.5 0.1 2.8 2 2 1 3 3 3 0 F plasmid transfer operon, TraF, protein RTBV_P46 PF06216.6 gi|302349006|ref|YP_003816644.1| - 4.8 5.9 13.3 0.16 10.7 1.5 2.5 1 1 2 3 3 3 0 Rice tungro bacilliform virus P46 protein HlyD PF00529.15 gi|302349006|ref|YP_003816644.1| - 4.8 6.3 27.1 4.9 6.3 10.5 2.1 1 1 1 2 2 2 0 HlyD family secretion protein Cortex-I_coil PF09304.5 gi|302349006|ref|YP_003816644.1| - 4.8 7.2 44.0 0.092 12.7 4.3 3.8 1 1 2 4 4 4 0 Cortexillin I, coiled coil Methyltrn_RNA_4 PF09936.4 gi|302349006|ref|YP_003816644.1| - 4.8 6.6 5.8 4.6 6.7 0.5 2.5 1 1 1 2 2 2 0 SAM-dependent RNA methyltransferase zf-ZPR1 PF03367.8 gi|302349006|ref|YP_003816644.1| - 5.1 6.2 12.3 0.59 9.2 4.1 2.6 1 1 0 2 2 2 0 ZPR1 zinc-finger domain FliD_C PF07195.7 gi|302349006|ref|YP_003816644.1| - 5.6 6.1 15.8 5.5e+02 -0.4 10.9 3.3 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Mod_r PF07200.8 gi|302349006|ref|YP_003816644.1| - 6.2 6.7 37.1 0.064 13.1 7.8 3.5 1 1 1 2 2 1 0 Modifier of rudimentary (Mod(r)) protein EzrA PF06160.7 gi|302349006|ref|YP_003816644.1| - 6.9 4.7 34.6 2.8 6.0 4.4 2.8 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA GLE1 PF07817.8 gi|302349006|ref|YP_003816644.1| - 9.1 5.1 12.9 4.9 6.0 1.6 2.4 2 0 0 2 2 2 0 GLE1-like protein ADIP PF11559.3 gi|302349006|ref|YP_003816644.1| - 9.2 6.1 38.0 0.3 10.9 6.4 3.6 2 2 1 3 3 3 0 Afadin- and alpha -actinin-Binding ATP-grasp_5 PF13549.1 gi|302349008|ref|YP_003816646.1| - 2.4e-72 242.7 0.2 4.3e-72 241.9 0.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|302349008|ref|YP_003816646.1| - 2.3e-47 160.0 0.6 2.3e-46 156.8 0.2 2.3 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|302349008|ref|YP_003816646.1| - 1.6e-27 95.9 0.2 4e-25 88.2 0.0 3.7 4 0 0 4 4 4 1 CoA binding domain CoA_binding PF02629.14 gi|302349008|ref|YP_003816646.1| - 4.5e-08 33.4 0.0 3.9e-07 30.5 0.0 2.5 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_4 PF13535.1 gi|302349008|ref|YP_003816646.1| - 0.0061 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|302349008|ref|YP_003816646.1| - 0.14 11.4 0.0 0.49 9.7 0.0 1.9 2 0 0 2 2 2 0 ATP-grasp domain AAA PF00004.24 gi|302349009|ref|YP_003816647.1| - 4.4e-100 331.0 0.0 2.7e-50 169.9 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|302349009|ref|YP_003816647.1| - 2.8e-21 75.2 0.1 1.4e-20 72.9 0.2 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|302349009|ref|YP_003816647.1| - 1.5e-15 56.9 0.0 5.6e-08 32.1 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|302349009|ref|YP_003816647.1| - 1.8e-15 57.2 0.0 2.1e-08 34.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|302349009|ref|YP_003816647.1| - 2.2e-13 50.4 0.3 2.3e-05 24.5 0.1 4.4 2 2 2 4 4 3 2 AAA domain AAA_17 PF13207.1 gi|302349009|ref|YP_003816647.1| - 4.1e-13 50.2 0.0 2.8e-06 28.1 0.0 3.2 3 1 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|302349009|ref|YP_003816647.1| - 5.3e-13 49.3 0.0 2.1e-06 27.8 0.0 3.0 2 1 1 3 3 3 2 AAA ATPase domain TIP49 PF06068.8 gi|302349009|ref|YP_003816647.1| - 1e-12 47.5 0.0 1.9e-05 23.5 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_5 PF07728.9 gi|302349009|ref|YP_003816647.1| - 5.3e-12 45.6 0.9 2.2e-05 24.2 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|302349009|ref|YP_003816647.1| - 7.4e-12 45.3 0.0 6.2e-05 22.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|302349009|ref|YP_003816647.1| - 9.6e-11 41.6 0.0 1.2e-05 25.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|302349009|ref|YP_003816647.1| - 1.1e-10 40.9 0.0 0.00011 21.3 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin CDC48_2 PF02933.12 gi|302349009|ref|YP_003816647.1| - 1.8e-10 40.3 0.1 9.9e-10 37.9 0.0 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 IstB_IS21 PF01695.12 gi|302349009|ref|YP_003816647.1| - 2.7e-09 36.6 0.6 0.0027 17.1 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|302349009|ref|YP_003816647.1| - 3.2e-09 36.4 1.4 0.015 14.7 0.0 3.8 2 1 0 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|302349009|ref|YP_003816647.1| - 1e-08 35.5 0.0 0.00031 21.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|302349009|ref|YP_003816647.1| - 1.2e-08 35.1 0.0 0.0036 17.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.5 gi|302349009|ref|YP_003816647.1| - 2.5e-08 33.6 0.1 2.3e-05 24.1 0.0 2.8 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain Mg_chelatase PF01078.16 gi|302349009|ref|YP_003816647.1| - 7.5e-08 31.7 1.2 0.0077 15.4 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|302349009|ref|YP_003816647.1| - 2.1e-07 30.5 2.2 0.013 15.2 0.1 2.7 2 0 0 2 2 2 2 Part of AAA domain RNA_helicase PF00910.17 gi|302349009|ref|YP_003816647.1| - 2.8e-07 30.6 0.0 0.0054 16.8 0.0 2.6 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.7 gi|302349009|ref|YP_003816647.1| - 7.7e-07 28.9 1.9 0.26 10.9 0.0 3.8 4 0 0 4 4 4 2 NACHT domain AAA_24 PF13479.1 gi|302349009|ref|YP_003816647.1| - 1.5e-06 27.9 0.1 0.024 14.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain Bac_DnaA PF00308.13 gi|302349009|ref|YP_003816647.1| - 2e-06 27.6 0.0 0.00025 20.7 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein Arch_ATPase PF01637.13 gi|302349009|ref|YP_003816647.1| - 2.1e-06 27.5 0.2 0.0015 18.2 0.0 2.9 2 1 1 3 3 3 1 Archaeal ATPase Sigma54_activat PF00158.21 gi|302349009|ref|YP_003816647.1| - 8.6e-06 25.3 0.1 0.22 11.0 0.0 3.2 2 1 0 2 2 2 2 Sigma-54 interaction domain KaiC PF06745.8 gi|302349009|ref|YP_003816647.1| - 9.8e-06 24.8 1.9 0.26 10.3 0.0 3.9 4 1 0 5 5 4 2 KaiC DUF815 PF05673.8 gi|302349009|ref|YP_003816647.1| - 1e-05 24.6 0.0 0.06 12.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_3 PF07726.6 gi|302349009|ref|YP_003816647.1| - 1.1e-05 24.9 0.0 0.11 12.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|302349009|ref|YP_003816647.1| - 1.5e-05 25.0 0.0 0.14 12.2 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|302349009|ref|YP_003816647.1| - 1.9e-05 23.6 0.2 0.038 12.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|302349009|ref|YP_003816647.1| - 4.1e-05 22.9 1.1 0.16 11.1 0.1 2.7 2 0 0 2 2 2 2 PhoH-like protein ABC_tran PF00005.22 gi|302349009|ref|YP_003816647.1| - 8.5e-05 22.8 0.0 0.65 10.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter UPF0079 PF02367.12 gi|302349009|ref|YP_003816647.1| - 0.00011 21.7 0.0 0.29 10.7 0.0 2.7 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 DUF2075 PF09848.4 gi|302349009|ref|YP_003816647.1| - 0.00035 19.6 0.0 0.053 12.4 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Molydop_binding PF01568.16 gi|302349009|ref|YP_003816647.1| - 0.00084 19.1 0.1 0.014 15.2 0.3 2.6 2 1 0 2 2 1 1 Molydopterin dinucleotide binding domain AAA_11 PF13086.1 gi|302349009|ref|YP_003816647.1| - 0.00094 18.8 0.0 0.99 8.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain IPT PF01745.11 gi|302349009|ref|YP_003816647.1| - 0.0011 18.1 0.7 1 8.5 0.0 2.7 3 0 0 3 3 3 1 Isopentenyl transferase SKI PF01202.17 gi|302349009|ref|YP_003816647.1| - 0.0015 18.4 0.0 0.89 9.4 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase T2SE PF00437.15 gi|302349009|ref|YP_003816647.1| - 0.0023 16.9 0.0 0.46 9.3 0.0 2.7 3 0 0 3 3 2 1 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|302349009|ref|YP_003816647.1| - 0.0026 17.2 0.0 2.3 7.6 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|302349009|ref|YP_003816647.1| - 0.0032 16.3 0.1 2.1 7.1 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain NTPase_1 PF03266.10 gi|302349009|ref|YP_003816647.1| - 0.0035 17.0 4.3 12 5.6 0.0 4.5 3 2 1 4 4 4 0 NTPase AFG1_ATPase PF03969.11 gi|302349009|ref|YP_003816647.1| - 0.0049 15.7 0.0 1.4 7.6 0.0 2.6 3 0 0 3 3 3 1 AFG1-like ATPase ResIII PF04851.10 gi|302349009|ref|YP_003816647.1| - 0.0098 15.7 0.0 3.2 7.5 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_10 PF12846.2 gi|302349009|ref|YP_003816647.1| - 0.012 15.1 0.1 3.3 7.0 0.0 3.0 2 1 1 3 3 3 0 AAA-like domain AAA_30 PF13604.1 gi|302349009|ref|YP_003816647.1| - 0.012 15.2 0.1 5.2 6.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|302349009|ref|YP_003816647.1| - 0.014 14.6 0.0 3.9 6.6 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 KAP_NTPase PF07693.9 gi|302349009|ref|YP_003816647.1| - 0.021 13.8 0.1 6.4 5.6 0.0 3.2 3 1 0 3 3 3 0 KAP family P-loop domain AAA_29 PF13555.1 gi|302349009|ref|YP_003816647.1| - 0.022 14.2 0.0 2.9 7.4 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Guanylate_kin PF00625.16 gi|302349009|ref|YP_003816647.1| - 0.022 14.2 0.1 11 5.4 0.0 3.3 2 1 1 3 3 3 0 Guanylate kinase Cytidylate_kin2 PF13189.1 gi|302349009|ref|YP_003816647.1| - 0.027 14.3 0.0 0.82 9.5 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family PduV-EutP PF10662.4 gi|302349009|ref|YP_003816647.1| - 0.034 13.6 0.0 7.8 5.9 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.1 gi|302349009|ref|YP_003816647.1| - 0.046 14.0 0.1 14 5.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.13 gi|302349009|ref|YP_003816647.1| - 0.052 13.0 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.10 gi|302349009|ref|YP_003816647.1| - 0.093 11.3 0.0 8.5 4.9 0.0 2.6 2 1 1 3 3 3 0 Rad17 cell cycle checkpoint protein cobW PF02492.14 gi|302349009|ref|YP_003816647.1| - 0.11 11.9 0.3 16 4.9 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|302349009|ref|YP_003816647.1| - 0.13 11.9 0.1 59 3.3 0.0 3.4 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_21 PF13304.1 gi|302349009|ref|YP_003816647.1| - 0.17 11.8 1.3 6.5 6.6 0.1 3.1 2 1 1 3 3 3 0 AAA domain CYTH PF01928.16 gi|302349010|ref|YP_003816648.1| - 3e-32 111.8 0.1 3.3e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 CYTH domain Ribosomal_S19e PF01090.14 gi|302349011|ref|YP_003816649.1| - 5.4e-56 187.9 0.0 6.2e-56 187.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.5 gi|302349011|ref|YP_003816649.1| - 0.0045 16.6 0.4 0.038 13.7 0.0 2.5 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|302349011|ref|YP_003816649.1| - 0.014 15.1 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|302349011|ref|YP_003816649.1| - 0.059 13.1 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|302349011|ref|YP_003816649.1| - 0.074 13.1 0.2 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator Mrr_N PF14338.1 gi|302349011|ref|YP_003816649.1| - 0.12 12.4 0.0 0.6 10.2 0.0 2.0 2 0 0 2 2 2 0 Mrr N-terminal domain DUF447 PF04289.7 gi|302349012|ref|YP_003816650.1| - 3.1e-10 39.8 0.0 3.4e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF447) MAF_flag10 PF01973.13 gi|302349013|ref|YP_003816651.1| - 7.1e-08 32.1 0.0 1.1e-07 31.4 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF115 MoeA_N PF03453.12 gi|302349014|ref|YP_003816652.1| - 4.6e-54 182.1 0.2 6.7e-54 181.6 0.1 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|302349014|ref|YP_003816652.1| - 2.2e-31 108.2 0.2 3.5e-31 107.5 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|302349014|ref|YP_003816652.1| - 2.2e-17 62.7 0.1 6.2e-17 61.3 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) RHH_2 PF03693.9 gi|302349015|ref|YP_003816653.1| - 0.0063 16.6 0.1 0.014 15.5 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) UPF0175 PF03683.8 gi|302349015|ref|YP_003816653.1| - 0.01 15.2 0.0 0.024 14.0 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|302349015|ref|YP_003816653.1| - 0.091 12.6 1.0 0.52 10.3 0.1 2.6 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|302349015|ref|YP_003816653.1| - 0.1 12.4 0.8 0.35 10.7 0.5 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) CcdA PF07362.7 gi|302349015|ref|YP_003816653.1| - 0.14 12.0 0.9 88 3.0 0.0 3.3 3 0 0 3 3 3 0 Post-segregation antitoxin CcdA VWA_2 PF13519.1 gi|302349016|ref|YP_003816654.1| - 1.2e-20 74.3 0.0 1.3e-20 74.2 0.0 1.0 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|302349016|ref|YP_003816654.1| - 7e-14 51.9 0.1 8.1e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|302349016|ref|YP_003816654.1| - 5.3e-06 26.1 0.0 7.4e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF1194 PF06707.6 gi|302349016|ref|YP_003816654.1| - 4.5e-05 22.5 0.0 5.8e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1194) MYEOV2 PF15004.1 gi|302349016|ref|YP_003816654.1| - 0.043 14.3 0.1 0.12 12.9 0.0 1.7 2 0 0 2 2 2 0 Myeloma-overexpressed-like RNase_PH_C PF03725.10 gi|302349016|ref|YP_003816654.1| - 0.13 12.2 0.2 1.7 8.6 0.0 2.2 2 0 0 2 2 2 0 3' exoribonuclease family, domain 2 Ribosomal_L6 PF00347.18 gi|302349018|ref|YP_003816656.1| - 1.6e-29 102.1 6.7 2e-17 63.4 1.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF4469 PF14734.1 gi|302349018|ref|YP_003816656.1| - 0.028 14.2 0.3 1.9 8.3 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4469) with IG-like fold Ribosomal_L32e PF01655.13 gi|302349019|ref|YP_003816657.1| - 5.4e-33 113.3 0.0 7e-33 112.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 HERV-K_env_2 PF13804.1 gi|302349019|ref|YP_003816657.1| - 0.12 11.8 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Retro-transcribing viruses envelope glycoprotein Ribosomal_L19e PF01280.15 gi|302349020|ref|YP_003816658.1| - 2.1e-43 147.6 2.3 2.3e-43 147.4 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.2 gi|302349020|ref|YP_003816658.1| - 0.006 16.8 1.6 21 5.4 0.0 3.9 3 1 0 3 3 3 2 Helix-turn-helix domain JmjN PF02375.12 gi|302349020|ref|YP_003816658.1| - 0.11 12.0 0.0 16 5.1 0.0 3.0 3 0 0 3 3 3 0 jmjN domain RVT_thumb PF06817.9 gi|302349020|ref|YP_003816658.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Reverse transcriptase thumb domain Ribosomal_L18p PF00861.17 gi|302349021|ref|YP_003816659.1| - 3.6e-35 120.7 0.1 9.1e-35 119.4 0.0 1.7 2 0 0 2 2 2 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|302349021|ref|YP_003816659.1| - 5e-08 33.3 0.0 8.9e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region DUF4456 PF14644.1 gi|302349021|ref|YP_003816659.1| - 0.022 14.0 0.1 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4456) AAA_22 PF13401.1 gi|302349021|ref|YP_003816659.1| - 0.12 12.4 0.2 0.2 11.8 0.1 1.7 2 1 0 2 2 2 0 AAA domain Ribosomal_S5_C PF03719.10 gi|302349022|ref|YP_003816660.1| - 7.1e-26 89.2 0.1 1.2e-25 88.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|302349022|ref|YP_003816660.1| - 1.2e-23 82.5 1.5 1.2e-23 82.5 1.1 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.15 gi|302349023|ref|YP_003816661.1| - 7.4e-12 44.6 0.0 1.3e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|302349024|ref|YP_003816662.1| - 3.2e-30 105.1 3.5 4.9e-30 104.5 2.4 1.3 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 DUF1425 PF07233.7 gi|302349024|ref|YP_003816662.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1425) AAA_19 PF13245.1 gi|302349025|ref|YP_003816663.1| - 4.3e-05 23.1 0.0 8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|302349025|ref|YP_003816663.1| - 0.00023 21.4 0.0 0.00033 20.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|302349025|ref|YP_003816663.1| - 0.00079 18.8 0.0 0.0015 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|302349025|ref|YP_003816663.1| - 0.00083 19.5 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|302349025|ref|YP_003816663.1| - 0.0012 18.1 0.0 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein AAA_16 PF13191.1 gi|302349025|ref|YP_003816663.1| - 0.0014 18.6 0.0 0.0018 18.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|302349025|ref|YP_003816663.1| - 0.002 17.5 0.0 0.0036 16.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.1 gi|302349025|ref|YP_003816663.1| - 0.0034 17.0 0.0 0.0055 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain NAD_binding_10 PF13460.1 gi|302349025|ref|YP_003816663.1| - 0.0034 17.4 0.0 0.0049 16.9 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding AAA_22 PF13401.1 gi|302349025|ref|YP_003816663.1| - 0.0038 17.3 0.0 0.005 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|302349025|ref|YP_003816663.1| - 0.0041 16.7 0.0 0.0065 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|302349025|ref|YP_003816663.1| - 0.0049 17.6 0.0 0.0064 17.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|302349025|ref|YP_003816663.1| - 0.0054 16.4 0.0 0.0068 16.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase UPF0079 PF02367.12 gi|302349025|ref|YP_003816663.1| - 0.012 15.2 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Glyco_transf_4 PF13439.1 gi|302349025|ref|YP_003816663.1| - 0.017 14.8 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 AAA_11 PF13086.1 gi|302349025|ref|YP_003816663.1| - 0.018 14.6 0.0 0.023 14.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|302349025|ref|YP_003816663.1| - 0.028 14.5 0.0 0.045 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase TIP49 PF06068.8 gi|302349025|ref|YP_003816663.1| - 0.036 12.7 0.0 0.05 12.3 0.0 1.1 1 0 0 1 1 1 0 TIP49 C-terminus AAA_5 PF07728.9 gi|302349025|ref|YP_003816663.1| - 0.071 12.8 0.0 0.11 12.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Glyco_trans_4_4 PF13579.1 gi|302349025|ref|YP_003816663.1| - 0.073 13.2 0.1 0.25 11.4 0.1 1.9 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain MobB PF03205.9 gi|302349025|ref|YP_003816663.1| - 0.089 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|302349025|ref|YP_003816663.1| - 0.11 12.4 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain HCV_core PF01542.13 gi|302349025|ref|YP_003816663.1| - 0.13 12.6 0.1 0.32 11.4 0.0 1.8 2 0 0 2 2 1 0 Hepatitis C virus core protein DUF46 PF01864.12 gi|302349026|ref|YP_003816664.1| - 1.1e-41 142.5 3.8 5e-41 140.4 2.6 1.7 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|302349026|ref|YP_003816664.1| - 1.2e-08 35.0 3.0 1.2e-08 35.0 2.1 2.0 1 1 1 2 2 2 1 Cytidylyltransferase family 5TM-5TMR_LYT PF07694.7 gi|302349026|ref|YP_003816664.1| - 1.9 7.7 6.4 4.8 6.4 4.4 1.6 1 1 0 1 1 1 0 5TMR of 5TMR-LYT Sulfate_tra_GLY PF13792.1 gi|302349026|ref|YP_003816664.1| - 7.4 6.3 7.8 5.1 6.8 0.9 2.7 2 1 0 2 2 2 0 Sulfate transporter N-terminal domain with GLY motif FBPase_3 PF01950.11 gi|302349027|ref|YP_003816665.1| - 9.3e-183 607.2 0.0 1.1e-182 607.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase TIM PF00121.13 gi|302349028|ref|YP_003816666.1| - 1.1e-19 70.4 0.3 3.3e-10 39.4 0.0 2.0 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.9 gi|302349028|ref|YP_003816666.1| - 1.3e-07 30.9 0.9 2.8e-07 29.8 0.6 1.5 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|302349028|ref|YP_003816666.1| - 5.4e-05 22.4 1.2 8.7e-05 21.8 0.8 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Trp_syntA PF00290.15 gi|302349028|ref|YP_003816666.1| - 0.00013 20.5 0.2 0.00055 18.5 0.1 1.8 2 0 0 2 2 2 1 Tryptophan synthase alpha chain IGPS PF00218.16 gi|302349028|ref|YP_003816666.1| - 0.00031 19.9 0.0 0.00055 19.0 0.0 1.4 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|302349028|ref|YP_003816666.1| - 0.00037 19.8 0.4 0.001 18.3 0.2 1.6 1 1 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|302349028|ref|YP_003816666.1| - 0.00061 18.7 0.9 0.0011 17.9 0.7 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase PcrB PF01884.12 gi|302349028|ref|YP_003816666.1| - 0.0017 17.6 0.1 0.0032 16.7 0.1 1.5 1 0 0 1 1 1 1 PcrB family IMPDH PF00478.20 gi|302349028|ref|YP_003816666.1| - 0.011 14.6 0.9 0.017 14.0 0.6 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.7 gi|302349028|ref|YP_003816666.1| - 0.017 14.0 0.1 0.03 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) HTH_11 PF08279.7 gi|302349029|ref|YP_003816667.1| - 2.1e-05 24.0 0.3 4.7e-05 22.9 0.2 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|302349029|ref|YP_003816667.1| - 3.7e-05 23.3 0.7 9.2e-05 22.0 0.2 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|302349029|ref|YP_003816667.1| - 8.6e-05 21.8 1.2 9.4e-05 21.7 0.1 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|302349029|ref|YP_003816667.1| - 0.0001 21.8 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|302349029|ref|YP_003816667.1| - 0.0012 19.0 0.1 0.0019 18.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|302349029|ref|YP_003816667.1| - 0.0013 18.2 1.1 0.0016 17.9 0.8 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|302349029|ref|YP_003816667.1| - 0.0015 18.1 0.0 0.003 17.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2089 PF09862.4 gi|302349029|ref|YP_003816667.1| - 0.0037 17.0 0.3 0.47 10.2 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF2089) HTH_29 PF13551.1 gi|302349029|ref|YP_003816667.1| - 0.0048 17.0 0.0 0.0069 16.5 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.10 gi|302349029|ref|YP_003816667.1| - 0.0067 16.2 0.3 1.5 8.7 0.0 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain of resolvase Rrf2 PF02082.15 gi|302349029|ref|YP_003816667.1| - 0.011 15.8 0.1 0.021 14.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Mga PF05043.8 gi|302349029|ref|YP_003816667.1| - 0.013 15.7 0.0 0.042 14.1 0.0 1.8 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_Mga PF08280.6 gi|302349029|ref|YP_003816667.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.7 gi|302349029|ref|YP_003816667.1| - 0.015 14.7 0.5 0.03 13.8 0.1 1.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_9 PF08221.6 gi|302349029|ref|YP_003816667.1| - 0.026 14.3 0.4 0.059 13.2 0.1 1.7 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_28 PF13518.1 gi|302349029|ref|YP_003816667.1| - 0.028 14.4 0.0 0.045 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|302349029|ref|YP_003816667.1| - 0.036 13.7 0.0 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_32 PF13565.1 gi|302349029|ref|YP_003816667.1| - 0.041 14.6 0.4 11 6.8 0.0 2.1 1 1 1 2 2 2 0 Homeodomain-like domain GntR PF00392.16 gi|302349029|ref|YP_003816667.1| - 0.073 12.5 0.1 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|302349029|ref|YP_003816667.1| - 0.095 12.4 0.1 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_6 PF01418.12 gi|302349029|ref|YP_003816667.1| - 0.098 12.3 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Ftsk_gamma PF09397.5 gi|302349029|ref|YP_003816667.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Ftsk gamma domain Peptidase_U32 PF01136.14 gi|302349029|ref|YP_003816667.1| - 0.12 11.2 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Peptidase family U32 Acyl-CoA_dh_1 PF00441.19 gi|302349030|ref|YP_003816668.1| - 1.1e-33 116.4 2.0 1.8e-33 115.7 1.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|302349030|ref|YP_003816668.1| - 1.2e-13 50.2 0.1 2.1e-13 49.5 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|302349030|ref|YP_003816668.1| - 1e-10 41.9 0.6 1.7e-10 41.2 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Ribosomal_L16 PF00252.13 gi|302349031|ref|YP_003816669.1| - 2e-31 108.5 0.0 2.3e-31 108.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e SHMT PF00464.14 gi|302349033|ref|YP_003816671.1| - 5.4e-68 229.1 0.2 6.7e-68 228.8 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|302349033|ref|YP_003816671.1| - 6.2e-12 45.2 0.1 8.7e-12 44.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|302349033|ref|YP_003816671.1| - 3.7e-08 32.7 0.0 1.1e-07 31.1 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|302349033|ref|YP_003816671.1| - 0.00071 18.4 0.6 0.0011 17.8 0.1 1.5 2 0 0 2 2 2 1 Aminotransferase class-V SelA PF03841.8 gi|302349033|ref|YP_003816671.1| - 0.0017 17.2 0.1 0.016 13.9 0.1 2.0 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Egg_lysin PF01303.12 gi|302349033|ref|YP_003816671.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 Egg lysin (Sperm-lysin) ABC_tran PF00005.22 gi|302349034|ref|YP_003816672.1| - 3.6e-26 92.0 0.0 5.2e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|302349034|ref|YP_003816672.1| - 3.4e-19 68.9 0.1 5.7e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|302349034|ref|YP_003816672.1| - 6.4e-15 55.8 1.3 3.8e-13 50.0 0.0 2.1 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|302349034|ref|YP_003816672.1| - 2.8e-05 23.4 0.2 0.00084 18.6 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|302349034|ref|YP_003816672.1| - 0.00015 21.1 0.0 0.00027 20.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|302349034|ref|YP_003816672.1| - 0.0013 18.2 0.0 0.0075 15.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|302349034|ref|YP_003816672.1| - 0.0016 17.6 0.8 0.058 12.4 0.3 2.1 2 0 0 2 2 2 1 AAA ATPase domain PRK PF00485.13 gi|302349034|ref|YP_003816672.1| - 0.015 14.8 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|302349034|ref|YP_003816672.1| - 0.028 15.2 0.1 0.13 13.0 0.0 2.2 2 1 0 2 2 2 0 AAA domain CbiA PF01656.18 gi|302349034|ref|YP_003816672.1| - 0.036 13.4 0.2 0.29 10.5 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.1 gi|302349034|ref|YP_003816672.1| - 0.042 14.1 0.0 0.099 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|302349034|ref|YP_003816672.1| - 0.077 12.6 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_10 PF12846.2 gi|302349034|ref|YP_003816672.1| - 0.099 12.0 0.3 0.47 9.8 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_13 PF13166.1 gi|302349034|ref|YP_003816672.1| - 0.1 11.0 0.0 4.1 5.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.10 gi|302349034|ref|YP_003816672.1| - 0.1 11.4 0.1 1.2 7.9 0.0 2.0 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_23 PF13476.1 gi|302349034|ref|YP_003816672.1| - 0.12 12.7 0.0 0.25 11.6 0.0 1.5 2 0 0 2 2 1 0 AAA domain DUF258 PF03193.11 gi|302349034|ref|YP_003816672.1| - 0.13 11.4 0.0 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|302349034|ref|YP_003816672.1| - 0.16 11.9 0.1 0.32 10.9 0.1 1.5 1 0 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|302349034|ref|YP_003816672.1| - 0.17 10.4 0.5 2.5 6.5 0.1 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|302349034|ref|YP_003816672.1| - 0.19 11.8 1.0 1.1 9.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|302349035|ref|YP_003816673.1| - 5e-28 98.1 0.0 7.4e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|302349035|ref|YP_003816673.1| - 1.4e-20 73.4 0.1 2.3e-20 72.7 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|302349035|ref|YP_003816673.1| - 4.9e-05 23.4 0.3 0.038 13.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|302349035|ref|YP_003816673.1| - 0.00022 21.3 0.1 0.00093 19.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|302349035|ref|YP_003816673.1| - 0.0098 15.4 0.3 0.02 14.4 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|302349035|ref|YP_003816673.1| - 0.04 13.3 0.2 0.19 11.1 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain UPF0079 PF02367.12 gi|302349035|ref|YP_003816673.1| - 0.064 12.8 0.2 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|302349035|ref|YP_003816673.1| - 0.085 12.0 0.1 0.14 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|302349035|ref|YP_003816673.1| - 0.11 11.9 0.5 1.1 8.5 0.2 2.3 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|302349035|ref|YP_003816673.1| - 0.13 11.7 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein KaiC PF06745.8 gi|302349035|ref|YP_003816673.1| - 0.13 11.3 0.2 0.21 10.6 0.1 1.4 1 0 0 1 1 1 0 KaiC DUF1056 PF06341.6 gi|302349036|ref|YP_003816674.1| - 0.022 14.7 0.2 0.026 14.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1056) PRC PF05239.11 gi|302349037|ref|YP_003816675.1| - 5.8e-05 22.8 2.6 5.8e-05 22.8 1.8 1.7 2 0 0 2 2 2 1 PRC-barrel domain Prp18 PF02840.10 gi|302349037|ref|YP_003816675.1| - 0.016 15.0 1.3 0.033 14.0 0.2 1.8 1 1 1 2 2 2 0 Prp18 domain DUF1664 PF07889.7 gi|302349037|ref|YP_003816675.1| - 0.2 11.4 4.6 3.8 7.3 0.6 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) AF0941-like PF14591.1 gi|302349037|ref|YP_003816675.1| - 0.2 11.7 5.0 2.6 8.1 3.4 2.5 1 1 0 1 1 1 0 AF0941-like Snf7 PF03357.16 gi|302349038|ref|YP_003816676.1| - 1.2e-05 24.8 1.2 1.5e-05 24.4 0.8 1.1 1 0 0 1 1 1 1 Snf7 PGK PF00162.14 gi|302349038|ref|YP_003816676.1| - 0.0048 15.4 0.2 0.0067 15.0 0.1 1.1 1 0 0 1 1 1 1 Phosphoglycerate kinase Epimerase_2 PF02350.14 gi|302349038|ref|YP_003816676.1| - 0.045 12.5 0.2 0.092 11.5 0.0 1.7 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase Baculo_PEP_C PF04513.7 gi|302349038|ref|YP_003816676.1| - 0.12 12.1 0.3 4.2 7.2 0.0 2.3 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Cbl_N PF02262.11 gi|302349038|ref|YP_003816676.1| - 0.15 11.7 0.3 2.8 7.6 0.2 2.1 1 1 1 2 2 2 0 CBL proto-oncogene N-terminal domain 1 TrmB PF01978.14 gi|302349039|ref|YP_003816677.1| - 3.4e-13 49.0 0.1 1e-12 47.5 0.0 1.8 1 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.15 gi|302349039|ref|YP_003816677.1| - 1 8.9 3.2 1.5 8.4 0.1 2.3 1 1 1 2 2 2 0 E2F/DP family winged-helix DNA-binding domain Topoisom_bac PF01131.15 gi|302349040|ref|YP_003816678.1| - 2.6e-84 283.4 0.0 3.8e-84 282.8 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|302349040|ref|YP_003816678.1| - 1.2e-21 76.5 0.0 3.8e-21 74.9 0.0 1.9 2 0 0 2 2 1 1 Toprim domain DEAD PF00270.24 gi|302349040|ref|YP_003816678.1| - 4.7e-16 58.7 0.1 5.5e-15 55.2 0.0 2.8 4 0 0 4 4 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|302349040|ref|YP_003816678.1| - 1.2e-07 31.7 0.0 2.8e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|302349040|ref|YP_003816678.1| - 3.1e-05 23.7 0.0 0.063 13.1 0.0 4.2 4 0 0 4 4 4 1 Helicase conserved C-terminal domain AAA_30 PF13604.1 gi|302349040|ref|YP_003816678.1| - 7.6e-05 22.3 0.8 0.00025 20.6 0.0 2.3 3 0 0 3 3 3 1 AAA domain PhoH PF02562.11 gi|302349040|ref|YP_003816678.1| - 0.0011 18.2 0.1 0.0042 16.3 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein AAA_25 PF13481.1 gi|302349040|ref|YP_003816678.1| - 0.0017 17.7 0.0 0.01 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain Toprim_4 PF13662.1 gi|302349040|ref|YP_003816678.1| - 0.002 18.0 0.1 0.012 15.5 0.0 2.4 2 0 0 2 2 2 1 Toprim domain IstB_IS21 PF01695.12 gi|302349040|ref|YP_003816678.1| - 0.006 16.0 0.0 0.02 14.3 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|302349040|ref|YP_003816678.1| - 0.0061 16.7 0.0 0.03 14.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain zinc_ribbon_2 PF13240.1 gi|302349040|ref|YP_003816678.1| - 0.0086 15.5 4.9 1.6 8.3 1.4 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Sgf11 PF08209.6 gi|302349040|ref|YP_003816678.1| - 0.046 13.0 0.1 0.14 11.5 0.1 1.9 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.1 gi|302349040|ref|YP_003816678.1| - 0.051 12.7 9.0 0.36 10.1 0.8 2.4 2 0 0 2 2 2 0 zinc-ribbon domain MobB PF03205.9 gi|302349040|ref|YP_003816678.1| - 0.07 12.8 0.2 0.26 10.9 0.0 2.0 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B HypA PF01155.14 gi|302349040|ref|YP_003816678.1| - 0.082 12.6 1.6 0.55 9.9 0.0 2.7 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Terminase_GpA PF05876.7 gi|302349040|ref|YP_003816678.1| - 0.094 11.0 0.0 0.2 9.9 0.0 1.5 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Pox_A32 PF04665.7 gi|302349040|ref|YP_003816678.1| - 0.13 11.5 0.1 0.28 10.4 0.0 1.5 2 0 0 2 2 2 0 Poxvirus A32 protein DZR PF12773.2 gi|302349040|ref|YP_003816678.1| - 0.17 11.7 5.7 0.27 11.0 0.2 2.2 2 0 0 2 2 2 0 Double zinc ribbon UPF0547 PF10571.4 gi|302349040|ref|YP_003816678.1| - 1.4 8.6 12.8 1.3 8.7 0.0 3.3 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|302349040|ref|YP_003816678.1| - 1.5 8.5 4.2 5.1 6.8 0.1 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF35_N PF12172.3 gi|302349040|ref|YP_003816678.1| - 2.2 8.3 4.3 2.4 8.1 0.5 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2HC_2 PF13913.1 gi|302349040|ref|YP_003816678.1| - 9.1 6.0 6.5 0.39 10.4 0.1 2.0 2 0 0 2 2 1 0 zinc-finger of a C2HC-type Pantoate_transf PF02548.10 gi|302349041|ref|YP_003816679.1| - 1.1e-108 362.3 0.5 1.2e-108 362.1 0.4 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|302349041|ref|YP_003816679.1| - 5.2e-13 48.7 3.1 2.4e-11 43.3 2.1 2.5 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ComA PF02679.10 gi|302349041|ref|YP_003816679.1| - 0.00075 18.5 0.8 0.044 12.7 0.2 2.1 1 1 1 2 2 2 2 (2R)-phospho-3-sulfolactate synthase (ComA) ALAD PF00490.16 gi|302349041|ref|YP_003816679.1| - 0.0018 17.2 0.7 0.0046 15.8 0.5 1.7 1 1 0 1 1 1 1 Delta-aminolevulinic acid dehydratase ApbA_C PF08546.6 gi|302349042|ref|YP_003816680.1| - 2.8e-23 82.2 0.3 3.9e-23 81.7 0.2 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|302349042|ref|YP_003816680.1| - 2.8e-13 49.5 0.0 4.4e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.1 gi|302349042|ref|YP_003816680.1| - 0.00052 19.9 0.6 0.0011 18.9 0.4 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|302349042|ref|YP_003816680.1| - 0.039 12.4 3.0 0.059 11.8 2.1 1.2 1 0 0 1 1 1 0 HI0933-like protein F420_oxidored PF03807.12 gi|302349042|ref|YP_003816680.1| - 0.056 13.8 1.8 0.14 12.6 0.5 2.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|302349042|ref|YP_003816680.1| - 0.076 13.0 0.3 0.2 11.6 0.1 1.8 2 0 0 2 2 2 0 NADH(P)-binding FAD_binding_3 PF01494.14 gi|302349042|ref|YP_003816680.1| - 0.18 10.8 1.7 0.38 9.7 1.2 1.5 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.22 gi|302349042|ref|YP_003816680.1| - 0.24 11.8 2.2 0.42 11.0 0.8 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|302349042|ref|YP_003816680.1| - 0.44 10.3 2.3 2.5 7.9 1.2 2.3 2 0 0 2 2 2 0 ThiF family GIDA PF01134.17 gi|302349042|ref|YP_003816680.1| - 0.72 8.6 2.5 1 8.1 1.7 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Alba PF01918.16 gi|302349043|ref|YP_003816681.1| - 3.8e-05 23.1 0.0 4.8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Alba eIF-5a PF01287.15 gi|302349044|ref|YP_003816682.1| - 4.1e-12 45.8 0.1 6.9e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|302349044|ref|YP_003816682.1| - 4.7e-07 29.5 0.0 9.9e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|302349044|ref|YP_003816682.1| - 0.00089 18.8 0.5 0.0016 18.0 0.3 1.5 1 0 0 1 1 1 1 KOW motif EFP PF01132.15 gi|302349044|ref|YP_003816682.1| - 0.0069 16.0 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain TFIIB PF00382.14 gi|302349045|ref|YP_003816683.1| - 2.2e-39 133.1 1.0 2.6e-20 71.9 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|302349045|ref|YP_003816683.1| - 3e-06 26.4 0.1 4.9e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_AsnC-type PF13404.1 gi|302349045|ref|YP_003816683.1| - 0.00083 18.8 0.1 0.0023 17.4 0.1 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|302349045|ref|YP_003816683.1| - 0.0021 17.3 0.0 0.013 14.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 UPF0253 PF06786.7 gi|302349045|ref|YP_003816683.1| - 0.0097 15.9 0.0 0.029 14.5 0.0 1.7 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0253) Sigma70_r4_2 PF08281.7 gi|302349045|ref|YP_003816683.1| - 0.0098 15.3 0.1 0.15 11.5 0.0 2.8 3 0 0 3 3 3 1 Sigma-70, region 4 Cyclin_C PF02984.14 gi|302349045|ref|YP_003816683.1| - 0.026 14.4 0.0 0.26 11.2 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain HTH_23 PF13384.1 gi|302349045|ref|YP_003816683.1| - 0.056 13.1 0.4 0.36 10.5 0.0 2.5 2 1 0 2 2 2 0 Homeodomain-like domain MMR_HSR1 PF01926.18 gi|302349046|ref|YP_003816684.1| - 1.4e-14 54.0 0.0 1.4e-11 44.3 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase DUF258 PF03193.11 gi|302349046|ref|YP_003816684.1| - 1.4e-06 27.5 0.0 2e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|302349046|ref|YP_003816684.1| - 4.1e-06 26.7 0.5 0.035 13.9 0.1 3.1 2 1 1 3 3 3 2 Dynamin family FeoB_N PF02421.13 gi|302349046|ref|YP_003816684.1| - 5.4e-06 25.7 0.0 6.3e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|302349046|ref|YP_003816684.1| - 0.00026 20.4 0.1 0.0069 15.8 0.0 2.7 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|302349046|ref|YP_003816684.1| - 0.017 14.5 0.0 0.15 11.4 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|302349046|ref|YP_003816684.1| - 0.021 15.2 0.0 0.16 12.5 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein AAA_16 PF13191.1 gi|302349046|ref|YP_003816684.1| - 0.023 14.6 0.3 0.11 12.5 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain AFOR_C PF01314.13 gi|302349047|ref|YP_003816685.1| - 4e-111 371.3 0.1 5.1e-111 371.0 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|302349047|ref|YP_003816685.1| - 8.5e-73 244.0 0.0 1.3e-72 243.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF2153 PF09921.4 gi|302349048|ref|YP_003816686.1| - 2.5e-42 143.4 0.3 2.8e-42 143.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) LXG PF04740.7 gi|302349048|ref|YP_003816686.1| - 0.065 13.0 0.0 0.083 12.6 0.0 1.3 1 1 0 1 1 1 0 LXG domain of WXG superfamily Ribosomal_S25 PF03297.10 gi|302349049|ref|YP_003816687.1| - 5.2e-05 23.2 0.4 6.7e-05 22.8 0.3 1.2 1 0 0 1 1 1 1 S25 ribosomal protein Fe_dep_repress PF01325.14 gi|302349049|ref|YP_003816687.1| - 0.0012 18.7 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|302349049|ref|YP_003816687.1| - 0.0019 17.8 0.1 0.0023 17.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|302349049|ref|YP_003816687.1| - 0.0058 16.9 0.0 0.011 16.0 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|302349049|ref|YP_003816687.1| - 0.023 14.3 0.0 0.039 13.6 0.0 1.4 1 1 0 1 1 1 0 MarR family GntR PF00392.16 gi|302349049|ref|YP_003816687.1| - 0.066 12.6 0.1 0.14 11.5 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|302349049|ref|YP_003816687.1| - 0.07 12.8 0.5 0.18 11.5 0.4 1.8 1 1 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|302349049|ref|YP_003816687.1| - 0.12 12.5 0.1 0.65 10.1 0.0 1.8 1 1 1 2 2 2 0 Transcriptional regulator EAP30 PF04157.11 gi|302349049|ref|YP_003816687.1| - 0.12 11.5 0.0 0.34 10.0 0.0 1.5 1 1 0 1 1 1 0 EAP30/Vps36 family Ribonuc_red_lgC PF02867.10 gi|302349050|ref|YP_003816688.1| - 7.9e-160 532.9 0.0 2e-159 531.6 0.0 1.6 2 0 0 2 2 2 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|302349050|ref|YP_003816688.1| - 1e-19 70.1 0.0 2.1e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain DAO PF01266.19 gi|302349051|ref|YP_003816689.1| - 3.9e-53 180.6 0.0 4.4e-53 180.4 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|302349051|ref|YP_003816689.1| - 9e-06 24.7 0.0 0.0019 17.1 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|302349051|ref|YP_003816689.1| - 4.9e-05 23.4 0.0 0.015 15.3 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|302349051|ref|YP_003816689.1| - 0.0001 22.2 0.1 0.00024 21.0 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|302349051|ref|YP_003816689.1| - 0.0022 16.5 0.0 0.19 10.1 0.0 2.9 3 0 0 3 3 3 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|302349051|ref|YP_003816689.1| - 0.0029 17.5 0.0 0.056 13.3 0.1 2.1 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|302349051|ref|YP_003816689.1| - 0.026 13.6 0.0 0.026 13.6 0.0 1.9 2 0 0 2 2 2 0 Thi4 family Lycopene_cycl PF05834.7 gi|302349051|ref|YP_003816689.1| - 0.051 12.4 0.0 0.087 11.7 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Aldolase PF01081.14 gi|302349052|ref|YP_003816690.1| - 0.088 11.9 1.2 8.6 5.4 0.3 2.3 2 0 0 2 2 2 0 KDPG and KHG aldolase CdhD PF03599.11 gi|302349052|ref|YP_003816690.1| - 0.12 10.8 0.1 2.3 6.6 0.0 2.1 2 0 0 2 2 2 0 CO dehydrogenase/acetyl-CoA synthase delta subunit SurE PF01975.12 gi|302349053|ref|YP_003816691.1| - 4.6e-44 150.0 0.1 6.4e-44 149.6 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE Hemerythrin PF01814.18 gi|302349054|ref|YP_003816692.1| - 3.1e-11 43.5 0.4 5e-11 42.8 0.3 1.4 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain Metallophos_2 PF12850.2 gi|302349055|ref|YP_003816693.1| - 2e-07 30.9 0.0 3.3e-07 30.2 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|302349055|ref|YP_003816693.1| - 0.022 14.1 0.5 0.096 12.0 0.0 1.9 1 1 0 2 2 2 0 Calcineurin-like phosphoesterase RimM PF01782.13 gi|302349055|ref|YP_003816693.1| - 0.11 12.4 0.1 0.25 11.3 0.1 1.6 1 0 0 1 1 1 0 RimM N-terminal domain Polyketide_cyc PF03364.15 gi|302349057|ref|YP_003816695.1| - 0.0063 16.5 0.0 0.0078 16.2 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport PC4 PF02229.11 gi|302349057|ref|YP_003816695.1| - 0.092 11.9 0.0 0.21 10.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional Coactivator p15 (PC4) Polyketide_cyc2 PF10604.4 gi|302349057|ref|YP_003816695.1| - 0.12 12.5 0.6 0.2 11.7 0.4 1.4 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport AMP-binding PF00501.23 gi|302349058|ref|YP_003816696.1| - 6.7e-82 275.1 0.0 8.4e-82 274.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|302349058|ref|YP_003816696.1| - 1.9e-14 54.3 1.3 4e-14 53.3 0.2 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Thiolase_C PF02803.13 gi|302349059|ref|YP_003816697.1| - 0.0027 17.1 0.0 0.0054 16.1 0.0 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_C PF02803.13 gi|302349060|ref|YP_003816698.1| - 0.0017 17.7 0.0 2.5 7.5 0.0 2.8 3 0 0 3 3 3 2 Thiolase, C-terminal domain Peptidase_M22 PF00814.20 gi|302349060|ref|YP_003816698.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Glycoprotease family DUF35 PF01796.12 gi|302349061|ref|YP_003816699.1| - 5.4e-11 42.5 0.1 8.3e-11 41.9 0.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|302349061|ref|YP_003816699.1| - 3.1e-10 39.6 2.6 7.4e-10 38.4 1.8 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|302349061|ref|YP_003816699.1| - 0.006 15.7 0.7 0.01 15.0 0.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain NMD3 PF04981.8 gi|302349061|ref|YP_003816699.1| - 0.017 14.2 0.3 0.025 13.6 0.2 1.2 1 0 0 1 1 1 0 NMD3 family DZR PF12773.2 gi|302349061|ref|YP_003816699.1| - 0.018 14.8 0.1 0.033 14.0 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-U1 PF06220.7 gi|302349061|ref|YP_003816699.1| - 0.023 14.2 0.3 0.043 13.3 0.2 1.4 1 0 0 1 1 1 0 U1 zinc finger Auto_anti-p27 PF06677.7 gi|302349061|ref|YP_003816699.1| - 0.1 12.3 0.2 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.1 gi|302349061|ref|YP_003816699.1| - 0.14 11.7 2.0 0.29 10.6 1.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF35 PF01796.12 gi|302349062|ref|YP_003816700.1| - 1.1e-06 28.7 0.5 1.8e-06 28.0 0.3 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|302349062|ref|YP_003816700.1| - 0.00053 19.8 0.0 0.001 18.9 0.0 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Prenyltransf PF01255.14 gi|302349063|ref|YP_003816701.1| - 1.4e-32 112.6 0.0 6.1e-20 71.3 0.0 2.0 1 1 1 2 2 2 2 Putative undecaprenyl diphosphate synthase AIRS_C PF02769.17 gi|302349064|ref|YP_003816702.1| - 2e-07 31.1 0.0 3e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|302349064|ref|YP_003816702.1| - 5.7e-07 29.6 0.2 1.2e-06 28.6 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF1886 PF09171.5 gi|302349065|ref|YP_003816703.1| - 1.6e-57 194.3 0.0 1.9e-57 194.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) VASP_tetra PF08776.6 gi|302349065|ref|YP_003816703.1| - 0.092 12.0 0.0 0.21 10.8 0.0 1.6 1 0 0 1 1 1 0 VASP tetramerisation domain Ribosomal_S8e PF01201.17 gi|302349066|ref|YP_003816704.1| - 2.6e-33 114.9 0.5 2.9e-33 114.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Spermine_synth PF01564.12 gi|302349067|ref|YP_003816705.1| - 7.8e-61 205.1 0.0 9.7e-61 204.8 0.0 1.0 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|302349067|ref|YP_003816705.1| - 1.3e-06 28.9 0.0 1.9e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302349067|ref|YP_003816705.1| - 4.4e-06 26.3 0.0 6e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|302349067|ref|YP_003816705.1| - 2.6e-05 24.5 0.0 4.4e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|302349067|ref|YP_003816705.1| - 0.00014 21.5 0.0 0.00023 20.8 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_12 PF08242.7 gi|302349067|ref|YP_003816705.1| - 0.0009 19.6 0.0 0.0018 18.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|302349067|ref|YP_003816705.1| - 0.0061 17.0 0.0 0.0095 16.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|302349067|ref|YP_003816705.1| - 0.029 13.7 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DUF340 PF03956.8 gi|302349068|ref|YP_003816706.1| - 0.016 14.5 0.3 0.018 14.3 0.2 1.1 1 0 0 1 1 1 0 Membrane protein of unknown function (DUF340) Lysis_S PF04971.7 gi|302349068|ref|YP_003816706.1| - 0.21 11.2 0.4 0.21 11.2 0.3 1.8 2 0 0 2 2 2 0 Lysis protein S Rab5ip PF07019.7 gi|302349068|ref|YP_003816706.1| - 1.3 9.2 5.7 0.33 11.0 1.1 1.9 2 0 0 2 2 2 0 Rab5-interacting protein (Rab5ip) AAA_10 PF12846.2 gi|302349070|ref|YP_003816708.1| - 9e-17 61.4 0.0 7.3e-11 42.0 0.0 2.4 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|302349070|ref|YP_003816708.1| - 5.6e-06 26.3 0.0 1.1e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|302349070|ref|YP_003816708.1| - 5.9e-05 21.6 0.0 0.064 11.5 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|302349070|ref|YP_003816708.1| - 0.00099 17.8 0.0 0.017 13.7 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|302349070|ref|YP_003816708.1| - 0.0022 17.5 0.0 0.023 14.1 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|302349070|ref|YP_003816708.1| - 0.022 14.8 0.0 0.19 11.8 0.0 2.5 1 1 0 1 1 1 0 AAA domain T4SS-DNA_transf PF02534.9 gi|302349070|ref|YP_003816708.1| - 0.047 12.2 0.0 0.091 11.3 0.0 1.4 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer Ribosomal_L2_C PF03947.13 gi|302349071|ref|YP_003816709.1| - 1.6e-42 144.3 0.1 2.2e-42 143.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|302349071|ref|YP_003816709.1| - 2.4e-12 46.6 0.0 4.9e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Phos_pyr_kin PF08543.7 gi|302349072|ref|YP_003816710.1| - 2.6e-96 321.5 0.1 8.1e-95 316.6 0.1 2.0 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|302349072|ref|YP_003816710.1| - 8.6e-53 178.2 0.0 1.3e-52 177.6 0.0 1.3 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|302349072|ref|YP_003816710.1| - 2.7e-13 49.7 0.1 5.4e-13 48.7 0.1 1.4 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|302349072|ref|YP_003816710.1| - 0.00015 21.1 0.1 0.00025 20.3 0.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase AIRS_C PF02769.17 gi|302349073|ref|YP_003816711.1| - 2.7e-21 76.1 0.1 4.2e-21 75.5 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|302349073|ref|YP_003816711.1| - 8.2e-05 22.7 0.1 0.0016 18.6 0.0 2.6 2 1 1 3 3 3 1 AIR synthase related protein, N-terminal domain Glyco_trans_1_3 PF13528.1 gi|302349074|ref|YP_003816712.1| - 6.4e-12 45.3 0.0 6e-05 22.3 0.0 2.3 2 1 0 2 2 2 2 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|302349074|ref|YP_003816712.1| - 6.1e-05 22.7 0.0 9.3e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain YmdB PF13277.1 gi|302349074|ref|YP_003816712.1| - 0.033 13.1 0.0 0.054 12.5 0.0 1.3 1 0 0 1 1 1 0 YmdB-like protein Fumerase PF05681.9 gi|302349075|ref|YP_003816713.1| - 1e-83 280.5 0.0 1.1e-83 280.4 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) SoxY PF13501.1 gi|302349075|ref|YP_003816713.1| - 0.16 12.0 0.1 0.46 10.5 0.0 1.7 2 0 0 2 2 2 0 Sulfur oxidation protein SoxY Fumerase_C PF05683.7 gi|302349076|ref|YP_003816714.1| - 4.4e-55 186.0 0.1 5e-55 185.8 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus tRNA_anti-codon PF01336.20 gi|302349076|ref|YP_003816714.1| - 0.09 12.6 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain UPF0051 PF01458.12 gi|302349077|ref|YP_003816715.1| - 8e-32 110.5 0.0 9.8e-32 110.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|302349078|ref|YP_003816716.1| - 1.4e-59 201.3 0.0 1.8e-59 200.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|302349079|ref|YP_003816717.1| - 2.1e-19 70.2 0.0 2.8e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302349079|ref|YP_003816717.1| - 3.9e-11 43.4 0.0 3.4e-05 23.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|302349079|ref|YP_003816717.1| - 1.2e-07 31.1 0.0 5.7e-06 25.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|302349079|ref|YP_003816717.1| - 0.00025 20.9 0.0 0.00046 20.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|302349079|ref|YP_003816717.1| - 0.00091 18.6 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_29 PF13555.1 gi|302349079|ref|YP_003816717.1| - 0.0012 18.3 0.0 0.002 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|302349079|ref|YP_003816717.1| - 0.0031 16.7 0.0 0.0053 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|302349079|ref|YP_003816717.1| - 0.0043 16.4 0.0 0.0084 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|302349079|ref|YP_003816717.1| - 0.0046 17.0 0.0 0.0071 16.3 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain TIP49 PF06068.8 gi|302349079|ref|YP_003816717.1| - 0.005 15.5 0.0 0.49 9.0 0.0 2.1 2 0 0 2 2 2 1 TIP49 C-terminus AAA PF00004.24 gi|302349079|ref|YP_003816717.1| - 0.0075 16.4 0.1 0.014 15.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|302349079|ref|YP_003816717.1| - 0.008 16.3 0.0 0.046 13.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|302349079|ref|YP_003816717.1| - 0.016 15.1 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|302349079|ref|YP_003816717.1| - 0.025 13.5 0.0 0.042 12.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|302349079|ref|YP_003816717.1| - 0.026 14.8 0.0 0.036 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|302349079|ref|YP_003816717.1| - 0.05 13.5 0.0 0.077 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|302349079|ref|YP_003816717.1| - 0.056 11.8 0.0 2.1 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|302349079|ref|YP_003816717.1| - 0.063 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|302349079|ref|YP_003816717.1| - 0.069 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|302349079|ref|YP_003816717.1| - 0.095 12.5 0.0 0.65 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|302349079|ref|YP_003816717.1| - 0.1 13.4 0.0 0.16 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|302349079|ref|YP_003816717.1| - 0.1 12.0 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation HEPN PF05168.9 gi|302349080|ref|YP_003816718.1| - 1.1e-08 34.9 1.1 6e-08 32.5 0.7 2.0 1 1 0 1 1 1 1 HEPN domain Radical_SAM PF04055.16 gi|302349081|ref|YP_003816719.1| - 5.1e-13 49.5 0.0 8.1e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|302349081|ref|YP_003816719.1| - 0.11 12.3 0.0 0.35 10.7 0.0 1.9 2 0 0 2 2 2 0 B12 binding domain AA_permease_2 PF13520.1 gi|302349082|ref|YP_003816720.1| - 4.1e-32 111.2 52.8 4.1e-32 111.2 36.6 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|302349082|ref|YP_003816720.1| - 4.6e-23 81.3 39.1 4.6e-23 81.3 27.1 2.1 2 0 0 2 2 2 1 Amino acid permease Aldolase_II PF00596.16 gi|302349083|ref|YP_003816721.1| - 2.6e-38 131.4 0.1 3e-38 131.2 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain HTH_Crp_2 PF13545.1 gi|302349083|ref|YP_003816721.1| - 0.052 13.3 0.0 0.31 10.8 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Ribonuc_red_sm PF00268.16 gi|302349084|ref|YP_003816722.1| - 0.028 13.4 0.6 0.084 11.8 0.1 1.9 1 1 1 2 2 2 0 Ribonucleotide reductase, small chain Ferritin PF00210.19 gi|302349084|ref|YP_003816722.1| - 0.042 13.5 5.0 0.12 12.1 3.5 1.8 1 1 0 1 1 1 0 Ferritin-like domain Op_neuropeptide PF08035.6 gi|302349084|ref|YP_003816722.1| - 0.096 12.2 0.1 10 5.7 0.0 2.5 2 0 0 2 2 2 0 Opioids neuropeptide Fungal_trans_2 PF11951.3 gi|302349084|ref|YP_003816722.1| - 0.11 11.1 2.1 0.12 10.9 0.8 1.5 1 1 1 2 2 2 0 Fungal specific transcription factor domain FCH PF00611.18 gi|302349084|ref|YP_003816722.1| - 0.12 12.5 1.4 0.48 10.6 0.2 2.2 2 0 0 2 2 2 0 Fes/CIP4, and EFC/F-BAR homology domain DUF148 PF02520.12 gi|302349084|ref|YP_003816722.1| - 1.1 9.0 5.6 12 5.7 0.0 2.8 2 1 0 2 2 2 0 Domain of unknown function DUF148 Peptidase_M19 PF01244.16 gi|302349085|ref|YP_003816723.1| - 6.1e-67 225.8 0.0 7.3e-67 225.5 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|302349085|ref|YP_003816723.1| - 0.00071 19.2 0.0 0.02 14.4 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase DUF424 PF04242.8 gi|302349086|ref|YP_003816724.1| - 3e-16 59.2 0.0 3.5e-16 59.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) ETF PF01012.16 gi|302349087|ref|YP_003816725.1| - 2.3e-30 105.4 0.2 2.3e-30 105.4 0.1 1.6 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|302349088|ref|YP_003816726.1| - 3.1e-30 103.6 0.1 8.8e-30 102.1 0.0 1.8 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|302349088|ref|YP_003816726.1| - 1.1e-09 38.2 0.3 4e-09 36.4 0.1 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein domain DUF4331 PF14224.1 gi|302349088|ref|YP_003816726.1| - 0.011 14.8 0.0 0.016 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4331) POR_N PF01855.14 gi|302349089|ref|YP_003816727.1| - 2.1e-59 200.8 0.0 3.1e-59 200.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|302349089|ref|YP_003816727.1| - 9.2e-31 107.0 0.1 2.2e-30 105.8 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|302349089|ref|YP_003816727.1| - 4.1e-05 23.1 0.1 0.00011 21.7 0.0 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|302349089|ref|YP_003816727.1| - 0.0016 18.3 0.0 0.0048 16.8 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|302349090|ref|YP_003816728.1| - 9.2e-29 99.9 0.1 3.5e-28 98.1 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|302349090|ref|YP_003816728.1| - 8.5e-11 41.6 0.2 1.4e-09 37.7 0.1 2.3 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Lipase_GDSL_2 PF13472.1 gi|302349090|ref|YP_003816728.1| - 0.002 18.2 0.0 0.33 11.0 0.0 2.5 1 1 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase family EamA PF00892.15 gi|302349091|ref|YP_003816729.1| - 2.8e-19 69.3 18.3 1.1e-13 51.2 7.1 2.4 2 1 0 2 2 2 2 EamA-like transporter family UPF0546 PF10639.4 gi|302349091|ref|YP_003816729.1| - 0.028 14.2 5.8 0.53 10.1 1.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 EmrE PF13536.1 gi|302349091|ref|YP_003816729.1| - 0.36 11.0 24.3 0.069 13.3 1.8 2.8 2 1 1 3 3 3 0 Multidrug resistance efflux transporter DUF4225 PF13988.1 gi|302349091|ref|YP_003816729.1| - 6.8 6.1 5.9 14 5.1 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) DUF296 PF03479.10 gi|302349092|ref|YP_003816730.1| - 1.7e-19 69.5 0.2 2.2e-19 69.2 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF296) AFOR_C PF01314.13 gi|302349093|ref|YP_003816731.1| - 6.5e-116 387.1 0.0 8.5e-116 386.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|302349093|ref|YP_003816731.1| - 2.9e-74 248.7 0.0 4.6e-74 248.1 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Fer4_11 PF13247.1 gi|302349094|ref|YP_003816732.1| - 1.5e-15 56.8 13.8 6.6e-14 51.6 6.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|302349094|ref|YP_003816732.1| - 5.2e-13 49.1 29.4 2.3e-07 31.0 8.4 3.4 1 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|302349094|ref|YP_003816732.1| - 1.1e-12 46.9 36.5 2.8e-07 29.8 2.2 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|302349094|ref|YP_003816732.1| - 2.4e-12 46.4 23.3 1.6e-07 30.9 6.7 2.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|302349094|ref|YP_003816732.1| - 3.7e-11 42.3 32.9 3.9e-05 23.3 1.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|302349094|ref|YP_003816732.1| - 8.8e-10 38.7 28.5 1.2e-07 31.8 7.3 2.9 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|302349094|ref|YP_003816732.1| - 3.2e-09 37.4 21.9 0.0085 16.8 1.1 4.2 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|302349094|ref|YP_003816732.1| - 1.8e-07 31.2 44.9 0.0051 17.2 3.9 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|302349094|ref|YP_003816732.1| - 1.4e-06 27.8 12.6 0.00015 21.4 1.9 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|302349094|ref|YP_003816732.1| - 2.5e-06 27.2 30.5 0.0011 18.8 7.6 3.7 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|302349094|ref|YP_003816732.1| - 5.1e-05 23.5 24.3 0.013 15.8 1.9 4.1 2 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|302349094|ref|YP_003816732.1| - 0.00038 20.9 19.7 0.02 15.4 0.3 4.1 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|302349094|ref|YP_003816732.1| - 0.0012 18.7 26.3 0.019 14.9 8.1 3.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|302349094|ref|YP_003816732.1| - 0.0022 18.1 3.8 0.0022 18.1 2.6 4.4 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|302349094|ref|YP_003816732.1| - 0.0056 17.0 30.0 0.015 15.7 2.5 4.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|302349094|ref|YP_003816732.1| - 0.032 14.6 1.2 0.032 14.6 0.8 4.1 4 0 0 4 4 4 0 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|302349095|ref|YP_003816733.1| - 1.5e-17 64.3 0.0 2.5e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|302349095|ref|YP_003816733.1| - 0.017 15.0 0.0 0.041 13.7 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain Radical_SAM PF04055.16 gi|302349096|ref|YP_003816734.1| - 2e-25 89.8 0.0 3.3e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|302349096|ref|YP_003816734.1| - 2.2e-08 34.3 0.0 3.8e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|302349096|ref|YP_003816734.1| - 5.1e-06 26.5 0.0 8e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|302349096|ref|YP_003816734.1| - 1.4e-05 25.3 0.4 3.6e-05 24.0 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain ACPS PF01648.15 gi|302349096|ref|YP_003816734.1| - 0.16 11.7 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 4'-phosphopantetheinyl transferase superfamily AP_endonuc_2 PF01261.19 gi|302349096|ref|YP_003816734.1| - 0.17 11.1 0.0 1.1 8.4 0.0 2.1 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel PadR PF03551.9 gi|302349097|ref|YP_003816735.1| - 1.9e-14 53.1 0.0 4.2e-14 52.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|302349097|ref|YP_003816735.1| - 0.0011 18.6 0.0 0.0031 17.3 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix HemN_C PF06969.11 gi|302349097|ref|YP_003816735.1| - 0.0094 15.9 0.2 0.026 14.5 0.0 1.9 2 0 0 2 2 2 1 HemN C-terminal domain RP-C PF03428.8 gi|302349097|ref|YP_003816735.1| - 0.08 12.3 0.2 0.15 11.4 0.2 1.4 1 1 0 1 1 1 0 Replication protein C N-terminal domain Mrr_N PF14338.1 gi|302349097|ref|YP_003816735.1| - 0.13 12.3 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 Mrr N-terminal domain NUDIX PF00293.23 gi|302349098|ref|YP_003816736.1| - 6e-18 64.7 0.0 7.1e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain TM_helix PF05552.7 gi|302349099|ref|YP_003816737.1| - 1.6e-07 30.8 0.7 1.6e-07 30.8 0.5 4.4 5 0 0 5 5 5 2 Conserved TM helix Lipid_DES PF08557.5 gi|302349099|ref|YP_003816737.1| - 0.15 11.3 0.1 5.4 6.3 0.0 2.5 3 0 0 3 3 3 0 Sphingolipid Delta4-desaturase (DES) TMCO5 PF14992.1 gi|302349099|ref|YP_003816737.1| - 0.4 9.7 1.4 0.67 9.0 1.0 1.3 1 0 0 1 1 1 0 TMCO5 family NDUF_B12 PF08122.7 gi|302349099|ref|YP_003816737.1| - 1.7 8.4 10.4 0.36 10.5 0.6 3.5 2 1 2 4 4 4 0 NADH-ubiquinone oxidoreductase B12 subunit family TusA PF01206.12 gi|302349100|ref|YP_003816738.1| - 4.1e-20 71.1 0.0 4.8e-20 70.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|302349100|ref|YP_003816738.1| - 0.0012 18.4 0.0 0.0024 17.3 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) Sulf_transp PF04143.9 gi|302349101|ref|YP_003816739.1| - 1.2e-10 41.2 34.1 8.9e-07 28.8 6.8 4.1 4 0 0 4 4 4 2 Sulphur transport Pox_I5 PF04713.7 gi|302349101|ref|YP_003816739.1| - 0.11 12.2 0.1 0.11 12.2 0.1 3.7 4 0 0 4 4 4 0 Poxvirus protein I5 ELFV_dehydrog PF00208.16 gi|302349102|ref|YP_003816740.1| - 3.3e-68 229.8 4.7 4.4e-68 229.4 3.3 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|302349102|ref|YP_003816740.1| - 1.2e-47 160.7 0.0 2.1e-47 159.9 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|302349102|ref|YP_003816740.1| - 3e-05 23.2 0.1 5.4e-05 22.4 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|302349102|ref|YP_003816740.1| - 0.0033 17.6 0.0 0.0072 16.5 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Bac_GDH PF05088.7 gi|302349102|ref|YP_003816740.1| - 0.0055 14.1 0.1 0.0081 13.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase IlvN PF07991.7 gi|302349102|ref|YP_003816740.1| - 0.013 14.8 0.1 0.083 12.2 0.1 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|302349102|ref|YP_003816740.1| - 0.015 14.8 0.4 0.015 14.8 0.3 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.16 gi|302349102|ref|YP_003816740.1| - 0.032 14.0 2.5 0.033 14.0 0.3 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox_2 PF07992.9 gi|302349102|ref|YP_003816740.1| - 0.077 12.8 0.5 0.16 11.8 0.3 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase MMR_HSR1 PF01926.18 gi|302349103|ref|YP_003816741.1| - 5.5e-15 55.3 0.0 1.2e-14 54.2 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|302349103|ref|YP_003816741.1| - 2.2e-11 43.2 0.0 3.5e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B NOG1 PF06858.9 gi|302349103|ref|YP_003816741.1| - 6.8e-11 41.8 0.0 1.4e-10 40.9 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) PduV-EutP PF10662.4 gi|302349103|ref|YP_003816741.1| - 0.00012 21.6 0.0 0.0015 18.0 0.0 2.3 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.1 gi|302349103|ref|YP_003816741.1| - 0.00014 21.9 0.1 0.00047 20.1 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AIG1 PF04548.11 gi|302349103|ref|YP_003816741.1| - 0.0018 17.4 0.0 0.0027 16.8 0.0 1.4 1 0 0 1 1 1 1 AIG1 family AAA_22 PF13401.1 gi|302349103|ref|YP_003816741.1| - 0.0034 17.5 0.0 0.01 15.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_PrkA PF08298.6 gi|302349103|ref|YP_003816741.1| - 0.013 14.1 0.0 0.41 9.2 0.0 2.2 1 1 1 2 2 2 0 PrkA AAA domain GTP_EFTU PF00009.22 gi|302349103|ref|YP_003816741.1| - 0.015 14.6 0.0 3.2 7.1 0.0 3.0 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.12 gi|302349103|ref|YP_003816741.1| - 0.018 14.6 0.0 2.1 7.8 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|302349103|ref|YP_003816741.1| - 0.023 14.1 0.1 0.25 10.7 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|302349103|ref|YP_003816741.1| - 0.047 14.5 0.0 0.12 13.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|302349103|ref|YP_003816741.1| - 0.1 13.0 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|302349103|ref|YP_003816741.1| - 0.11 12.3 0.6 4.7 6.9 0.0 2.4 1 1 1 2 2 2 0 Dynamin family AAA_33 PF13671.1 gi|302349103|ref|YP_003816741.1| - 0.11 12.3 0.0 0.31 10.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|302349103|ref|YP_003816741.1| - 0.11 12.1 0.2 1.6 8.4 0.0 2.6 3 0 0 3 3 3 0 NTPase AAA_23 PF13476.1 gi|302349103|ref|YP_003816741.1| - 0.12 12.7 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|302349103|ref|YP_003816741.1| - 0.12 11.7 1.5 0.25 10.7 0.1 2.0 2 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain PLD_C PF12357.3 gi|302349103|ref|YP_003816741.1| - 0.14 11.7 0.1 0.4 10.2 0.1 1.7 1 0 0 1 1 1 0 Phospholipase D C terminal PPV_E1_C PF00519.12 gi|302349103|ref|YP_003816741.1| - 0.14 10.7 0.0 0.21 10.1 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA_29 PF13555.1 gi|302349103|ref|YP_003816741.1| - 0.18 11.3 0.0 0.39 10.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TF_Zn_Ribbon PF08271.7 gi|302349104|ref|YP_003816742.1| - 2e-09 36.5 0.2 3.2e-09 35.9 0.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|302349104|ref|YP_003816742.1| - 9.6e-06 24.9 0.2 1.6e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|302349104|ref|YP_003816742.1| - 0.0032 17.4 0.3 0.0057 16.6 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.1 gi|302349104|ref|YP_003816742.1| - 0.0055 15.8 0.4 0.011 14.9 0.3 1.5 1 1 0 1 1 1 1 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|302349104|ref|YP_003816742.1| - 0.0059 16.8 0.1 0.012 15.8 0.1 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|302349104|ref|YP_003816742.1| - 0.0084 15.8 0.5 0.017 14.9 0.3 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF4182 PF13790.1 gi|302349104|ref|YP_003816742.1| - 0.033 13.9 0.2 0.061 13.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4182) Zn_ribbon_recom PF13408.1 gi|302349104|ref|YP_003816742.1| - 0.061 13.6 1.4 10 6.4 0.1 2.3 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Trm112p PF03966.11 gi|302349104|ref|YP_003816742.1| - 0.062 13.6 1.5 0.16 12.3 0.4 2.1 2 1 0 2 2 2 0 Trm112p-like protein Ribosomal_S27e PF01667.12 gi|302349104|ref|YP_003816742.1| - 0.088 12.3 0.1 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 RRN7 PF11781.3 gi|302349104|ref|YP_003816742.1| - 0.11 12.0 0.5 0.18 11.3 0.4 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 OrfB_Zn_ribbon PF07282.6 gi|302349104|ref|YP_003816742.1| - 0.12 12.0 0.5 0.25 11.0 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|302349104|ref|YP_003816742.1| - 0.48 9.9 3.4 2.7 7.6 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|302349104|ref|YP_003816742.1| - 0.77 9.5 2.6 2 8.2 1.8 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Phage_integrase PF00589.17 gi|302349105|ref|YP_003816743.1| - 2.8e-33 115.0 0.1 8.1e-33 113.5 0.1 1.8 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|302349105|ref|YP_003816743.1| - 9.6e-08 32.2 0.0 4.3e-05 23.7 0.0 2.3 2 0 0 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|302349105|ref|YP_003816743.1| - 1.1e-07 31.9 0.1 5e-07 29.7 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|302349105|ref|YP_003816743.1| - 0.0034 17.1 0.3 0.01 15.6 0.2 1.7 1 1 0 1 1 1 1 Integrase E3_binding PF02817.12 gi|302349105|ref|YP_003816743.1| - 0.0075 15.8 0.4 0.33 10.6 0.0 3.5 5 0 0 5 5 5 1 e3 binding domain DUF165 PF02592.10 gi|302349106|ref|YP_003816744.1| - 0.018 15.1 0.3 3.8 7.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized ACR, YhhQ family COG1738 DUF3235 PF11574.3 gi|302349106|ref|YP_003816744.1| - 0.1 12.8 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3235) GatB_N PF02934.10 gi|302349108|ref|YP_003816746.1| - 2.4e-81 272.8 0.0 3.3e-81 272.3 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|302349108|ref|YP_003816746.1| - 4.4e-23 81.6 1.6 4.4e-23 81.6 1.1 2.1 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|302349108|ref|YP_003816746.1| - 7.5e-17 61.2 0.0 2.5e-16 59.6 0.0 2.0 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|302349108|ref|YP_003816746.1| - 0.00078 19.3 0.9 0.0024 17.7 0.6 1.8 1 0 0 1 1 1 1 Yqey-like protein Asparaginase PF00710.15 gi|302349109|ref|YP_003816747.1| - 3.6e-95 318.4 0.0 4.4e-95 318.1 0.0 1.1 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|302349109|ref|YP_003816747.1| - 0.16 11.2 0.0 1 8.6 0.0 2.2 3 0 0 3 3 3 0 Periplasmic binding protein domain Ribosomal_S30 PF04758.9 gi|302349110|ref|YP_003816748.1| - 2.2e-07 30.5 4.6 2.3e-07 30.4 3.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Nop PF01798.13 gi|302349111|ref|YP_003816749.1| - 1.5e-51 173.6 0.0 2.6e-51 172.8 0.0 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|302349111|ref|YP_003816749.1| - 6.1e-20 70.7 0.5 1.3e-19 69.6 0.1 1.8 2 0 0 2 2 2 1 NOSIC (NUC001) domain Fibrillarin PF01269.12 gi|302349112|ref|YP_003816750.1| - 1.1e-90 302.6 0.0 1.2e-90 302.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|302349112|ref|YP_003816750.1| - 0.0036 16.8 0.0 0.0066 16.0 0.0 1.4 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|302349112|ref|YP_003816750.1| - 0.031 13.7 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|302349112|ref|YP_003816750.1| - 0.048 13.6 0.0 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain DUF61 PF01886.11 gi|302349113|ref|YP_003816751.1| - 1.8e-13 50.4 0.0 1.9e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF61 PALP PF00291.20 gi|302349114|ref|YP_003816752.1| - 3.7e-79 266.1 1.2 4.4e-79 265.8 0.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|302349114|ref|YP_003816752.1| - 2.4e-07 30.0 0.0 5.7e-07 28.8 0.0 1.6 1 0 0 1 1 1 1 ACT domain MacB_PCD PF12704.2 gi|302349114|ref|YP_003816752.1| - 0.026 14.1 0.0 0.046 13.2 0.0 1.4 1 0 0 1 1 1 0 MacB-like periplasmic core domain ACT_6 PF13740.1 gi|302349114|ref|YP_003816752.1| - 0.061 13.0 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 ACT domain AsnC_trans_reg PF01037.16 gi|302349116|ref|YP_003816754.1| - 2.9e-13 49.2 0.0 5e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|302349116|ref|YP_003816754.1| - 9e-12 44.1 0.1 7.9e-11 41.1 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|302349116|ref|YP_003816754.1| - 4.3e-11 42.1 0.0 7.9e-11 41.3 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|302349116|ref|YP_003816754.1| - 4.2e-06 26.3 0.0 1.2e-05 24.8 0.0 1.8 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|302349116|ref|YP_003816754.1| - 0.0003 20.4 1.1 0.00046 19.8 0.1 1.9 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|302349116|ref|YP_003816754.1| - 0.0005 19.6 0.0 0.0011 18.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|302349116|ref|YP_003816754.1| - 0.00069 19.2 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|302349116|ref|YP_003816754.1| - 0.0014 18.3 0.0 0.0072 16.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|302349116|ref|YP_003816754.1| - 0.0051 16.4 0.0 0.01 15.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|302349116|ref|YP_003816754.1| - 0.0054 16.3 0.0 0.014 15.0 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_Mga PF08280.6 gi|302349116|ref|YP_003816754.1| - 0.0062 16.2 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.1 gi|302349116|ref|YP_003816754.1| - 0.0074 16.2 0.0 0.021 14.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain NapD PF03927.8 gi|302349116|ref|YP_003816754.1| - 0.0085 15.9 0.0 0.4 10.5 0.0 2.3 1 1 1 2 2 2 1 NapD protein HTH_IclR PF09339.5 gi|302349116|ref|YP_003816754.1| - 0.01 15.4 0.0 0.027 14.0 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_7 PF02796.10 gi|302349116|ref|YP_003816754.1| - 0.013 15.2 0.0 0.061 13.2 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.7 gi|302349116|ref|YP_003816754.1| - 0.016 14.7 0.0 0.033 13.7 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Mga PF05043.8 gi|302349116|ref|YP_003816754.1| - 0.016 15.4 0.0 0.033 14.4 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|302349116|ref|YP_003816754.1| - 0.018 14.5 0.0 0.047 13.1 0.0 1.7 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_22 PF13309.1 gi|302349116|ref|YP_003816754.1| - 0.019 14.6 0.3 0.15 11.8 0.2 2.4 1 1 0 1 1 1 0 HTH domain Phage_terminase PF10668.4 gi|302349116|ref|YP_003816754.1| - 0.025 14.3 0.0 0.045 13.5 0.0 1.5 1 0 0 1 1 1 0 Phage terminase small subunit Fe_dep_repress PF01325.14 gi|302349116|ref|YP_003816754.1| - 0.031 14.2 0.1 0.065 13.1 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DDRGK PF09756.4 gi|302349116|ref|YP_003816754.1| - 0.064 12.6 0.0 0.099 12.0 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_34 PF13601.1 gi|302349116|ref|YP_003816754.1| - 0.073 13.1 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_IS630 PF01710.11 gi|302349116|ref|YP_003816754.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Transposase NAD_binding_8 PF13450.1 gi|302349117|ref|YP_003816755.1| - 7.4e-07 29.0 0.1 2e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|302349117|ref|YP_003816755.1| - 0.00036 19.5 0.0 0.00083 18.3 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|302349117|ref|YP_003816755.1| - 0.00046 20.1 0.1 0.00073 19.4 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|302349117|ref|YP_003816755.1| - 0.0011 17.5 0.0 0.0024 16.4 0.0 1.5 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.17 gi|302349117|ref|YP_003816755.1| - 0.0012 17.7 0.3 0.002 17.0 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|302349117|ref|YP_003816755.1| - 0.0028 16.6 0.1 0.32 9.8 0.1 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|302349117|ref|YP_003816755.1| - 0.0068 15.2 0.2 0.015 14.1 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|302349117|ref|YP_003816755.1| - 0.0075 15.3 0.1 0.016 14.2 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|302349117|ref|YP_003816755.1| - 0.0092 15.1 0.4 0.016 14.3 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|302349117|ref|YP_003816755.1| - 0.011 14.8 0.0 0.02 13.9 0.0 1.5 1 0 0 1 1 1 0 Thi4 family Pyr_redox_3 PF13738.1 gi|302349117|ref|YP_003816755.1| - 0.031 14.3 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Archease PF01951.11 gi|302349118|ref|YP_003816756.1| - 2.8e-42 143.9 0.0 3.1e-42 143.7 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Peptidase_M54 PF07998.6 gi|302349119|ref|YP_003816757.1| - 5.9e-27 94.6 0.0 7.5e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|302349119|ref|YP_003816757.1| - 8.4e-05 22.3 0.0 8.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.3 gi|302349119|ref|YP_003816757.1| - 0.016 13.7 0.2 0.022 13.2 0.2 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M66 PF10462.4 gi|302349119|ref|YP_003816757.1| - 0.03 13.1 0.0 0.041 12.7 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 HhH-GPD PF00730.20 gi|302349120|ref|YP_003816758.1| - 1.2e-13 51.2 0.0 1.6e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|302349120|ref|YP_003816758.1| - 1.2e-06 28.4 6.6 2e-06 27.7 4.6 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|302349120|ref|YP_003816758.1| - 7.8e-06 25.9 0.2 0.025 14.7 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix domain DAO PF01266.19 gi|302349120|ref|YP_003816758.1| - 0.049 12.5 0.0 0.055 12.3 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase DUF3320 PF11784.3 gi|302349120|ref|YP_003816758.1| - 0.05 13.1 0.1 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3320) HHH PF00633.18 gi|302349120|ref|YP_003816758.1| - 0.071 12.8 0.0 0.27 11.0 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif Cdc6_C PF09079.6 gi|302349122|ref|YP_003816760.1| - 1.9e-15 56.3 0.0 4e-15 55.3 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|302349122|ref|YP_003816760.1| - 4.3e-11 43.0 0.0 1e-10 41.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|302349122|ref|YP_003816760.1| - 0.00022 21.2 0.0 0.00082 19.4 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|302349122|ref|YP_003816760.1| - 0.0017 18.1 0.2 0.0041 16.8 0.1 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_35 PF14516.1 gi|302349122|ref|YP_003816760.1| - 0.0027 16.3 0.1 0.0048 15.5 0.1 1.3 1 0 0 1 1 1 1 AAA-like domain AAA PF00004.24 gi|302349122|ref|YP_003816760.1| - 0.0061 16.7 0.0 0.015 15.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|302349122|ref|YP_003816760.1| - 0.023 13.5 0.0 0.049 12.4 0.0 1.4 1 1 0 1 1 1 0 NB-ARC domain Trigger_C PF05698.9 gi|302349122|ref|YP_003816760.1| - 0.035 13.9 0.0 0.09 12.6 0.0 1.8 1 1 0 1 1 1 0 Bacterial trigger factor protein (TF) C-terminus RuvB_N PF05496.7 gi|302349122|ref|YP_003816760.1| - 0.081 11.9 0.2 1.1 8.2 0.0 2.5 2 1 1 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus NTPase_1 PF03266.10 gi|302349122|ref|YP_003816760.1| - 0.089 12.4 0.0 0.34 10.6 0.0 1.9 1 0 0 1 1 1 0 NTPase PhoH PF02562.11 gi|302349122|ref|YP_003816760.1| - 0.11 11.7 0.1 8.2 5.5 0.0 2.7 3 0 0 3 3 3 0 PhoH-like protein RNA_helicase PF00910.17 gi|302349122|ref|YP_003816760.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PCP_red PF08369.5 gi|302349122|ref|YP_003816760.1| - 1.4 8.8 7.1 0.28 11.0 1.4 2.4 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit TrmB PF01978.14 gi|302349123|ref|YP_003816761.1| - 2.2e-07 30.4 0.7 2.7e-07 30.1 0.1 1.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|302349123|ref|YP_003816761.1| - 4.9e-06 26.2 0.0 7.1e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|302349123|ref|YP_003816761.1| - 4.3e-05 23.1 0.8 0.00011 21.8 0.3 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_9 PF08221.6 gi|302349123|ref|YP_003816761.1| - 0.00052 19.8 0.2 0.00081 19.2 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.1 gi|302349123|ref|YP_003816761.1| - 0.00084 18.6 0.5 0.0014 17.9 0.2 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|302349123|ref|YP_003816761.1| - 0.0013 18.5 0.9 0.0016 18.2 0.2 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|302349123|ref|YP_003816761.1| - 0.0051 16.8 0.1 0.0079 16.2 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator FeoC PF09012.5 gi|302349123|ref|YP_003816761.1| - 0.0081 15.8 0.2 0.015 14.9 0.1 1.5 1 1 0 1 1 1 1 FeoC like transcriptional regulator MarR PF01047.17 gi|302349123|ref|YP_003816761.1| - 0.0091 15.6 0.2 0.04 13.6 0.1 1.8 2 0 0 2 2 2 1 MarR family DUF2250 PF10007.4 gi|302349123|ref|YP_003816761.1| - 0.011 15.6 0.2 0.014 15.3 0.2 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|302349123|ref|YP_003816761.1| - 0.013 15.8 0.3 0.022 15.0 0.1 1.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain TBPIP PF07106.8 gi|302349123|ref|YP_003816761.1| - 0.019 14.5 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MarR_2 PF12802.2 gi|302349123|ref|YP_003816761.1| - 0.033 13.8 1.3 0.033 13.8 0.3 1.5 2 0 0 2 2 2 0 MarR family GatB_Yqey PF02637.13 gi|302349123|ref|YP_003816761.1| - 0.061 13.0 0.0 0.072 12.8 0.0 1.1 1 0 0 1 1 1 0 GatB domain MoaC PF01967.16 gi|302349124|ref|YP_003816762.1| - 3.2e-42 143.4 0.9 3.6e-42 143.2 0.6 1.0 1 0 0 1 1 1 1 MoaC family BP28CT PF08146.7 gi|302349125|ref|YP_003816763.1| - 0.13 11.9 0.0 0.65 9.7 0.0 1.8 1 1 0 1 1 1 0 BP28CT (NUC211) domain DHH PF01368.15 gi|302349126|ref|YP_003816764.1| - 1.4e-05 24.8 0.0 2.4e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 DHH family Pyr_redox PF00070.22 gi|302349127|ref|YP_003816765.1| - 1.5e-06 28.4 0.1 0.0004 20.7 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|302349127|ref|YP_003816765.1| - 2.1e-06 27.6 0.1 2.1e-06 27.6 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|302349127|ref|YP_003816765.1| - 4.5e-06 25.8 0.2 0.00086 18.3 0.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|302349127|ref|YP_003816765.1| - 1.9e-05 23.9 1.2 0.018 14.0 0.0 3.1 4 0 0 4 4 4 2 FAD binding domain HI0933_like PF03486.9 gi|302349127|ref|YP_003816765.1| - 7.2e-05 21.4 0.0 0.0001 20.9 0.0 1.1 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|302349127|ref|YP_003816765.1| - 0.00068 19.5 0.0 0.0013 18.7 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|302349127|ref|YP_003816765.1| - 0.0013 17.6 0.5 0.29 10.0 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|302349127|ref|YP_003816765.1| - 0.0053 15.6 0.0 0.025 13.4 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|302349127|ref|YP_003816765.1| - 0.018 13.8 0.1 0.026 13.3 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|302349127|ref|YP_003816765.1| - 0.02 14.6 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|302349127|ref|YP_003816765.1| - 0.061 13.3 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|302349127|ref|YP_003816765.1| - 0.12 12.0 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aconitase PF00330.15 gi|302349128|ref|YP_003816766.1| - 1.3e-141 472.3 0.0 1.6e-141 472.0 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|302349128|ref|YP_003816766.1| - 3.4e-36 124.2 0.0 7.2e-36 123.1 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain AA_permease_2 PF13520.1 gi|302349129|ref|YP_003816767.1| - 5.1e-12 45.0 40.5 9.1e-12 44.2 27.8 1.6 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|302349129|ref|YP_003816767.1| - 9.1e-11 40.7 42.1 1.3e-09 36.9 29.2 2.2 1 1 0 1 1 1 1 Amino acid permease Abhydrolase_5 PF12695.2 gi|302349130|ref|YP_003816768.1| - 1.5e-17 63.7 0.4 1.9e-17 63.3 0.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|302349130|ref|YP_003816768.1| - 2.4e-17 63.5 3.0 2.3e-10 40.7 0.7 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|302349130|ref|YP_003816768.1| - 1.1e-11 44.7 0.1 1.3e-07 31.4 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Ndr PF03096.9 gi|302349130|ref|YP_003816768.1| - 9.3e-05 21.0 0.2 0.00015 20.3 0.1 1.4 1 1 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.5 gi|302349130|ref|YP_003816768.1| - 0.0031 17.3 0.0 0.0051 16.6 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Peptidase_S9 PF00326.16 gi|302349130|ref|YP_003816768.1| - 0.018 14.2 0.2 5.8 6.0 0.1 2.5 2 1 1 3 3 3 0 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|302349130|ref|YP_003816768.1| - 0.091 12.6 0.0 0.2 11.5 0.0 1.6 2 0 0 2 2 2 0 Putative lysophospholipase PGAP1 PF07819.8 gi|302349130|ref|YP_003816768.1| - 0.095 12.2 0.1 4.7 6.7 0.0 2.7 3 0 0 3 3 3 0 PGAP1-like protein zf-C2H2_3 PF13878.1 gi|302349131|ref|YP_003816769.1| - 0.046 13.3 0.7 0.046 13.3 0.5 1.8 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Corona_NS3b PF03053.9 gi|302349132|ref|YP_003816770.1| - 0.17 11.4 6.8 0.34 10.4 4.7 1.5 1 0 0 1 1 1 0 ORF3b coronavirus protein IFRD PF05004.8 gi|302349133|ref|YP_003816771.1| - 0.028 13.4 0.1 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 Interferon-related developmental regulator (IFRD) DeoC PF01791.4 gi|302349135|ref|YP_003816773.1| - 1.2e-42 145.8 0.0 1.4e-42 145.6 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.16 gi|302349135|ref|YP_003816773.1| - 0.079 12.2 0.0 0.17 11.1 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein FAD-oxidase_C PF02913.14 gi|302349136|ref|YP_003816774.1| - 2.6e-58 197.2 0.0 3.9e-58 196.6 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|302349136|ref|YP_003816774.1| - 3.7e-37 126.8 0.2 7e-37 125.9 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain AP_endonuc_2 PF01261.19 gi|302349136|ref|YP_003816774.1| - 0.0096 15.2 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel SIS PF01380.17 gi|302349138|ref|YP_003816776.1| - 3.9e-40 136.5 0.4 6.6e-26 90.4 0.2 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|302349138|ref|YP_003816776.1| - 2.8e-22 79.1 0.0 6.7e-22 77.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|302349138|ref|YP_003816776.1| - 7.9e-19 67.6 0.0 1.9e-18 66.3 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|302349138|ref|YP_003816776.1| - 1.7e-13 49.9 0.0 1.5e-10 40.3 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|302349138|ref|YP_003816776.1| - 0.0015 18.2 1.5 0.046 13.4 0.3 3.0 2 1 0 3 3 3 1 SIS domain GATase_4 PF13230.1 gi|302349138|ref|YP_003816776.1| - 0.0059 15.3 0.0 0.0097 14.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.4 gi|302349138|ref|YP_003816776.1| - 0.053 13.2 0.4 0.11 12.2 0.3 1.5 1 0 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal region Amidohydro_4 PF13147.1 gi|302349139|ref|YP_003816777.1| - 7.6e-13 49.1 7.7 1.5e-10 41.5 5.3 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|302349139|ref|YP_003816777.1| - 8.7e-11 42.0 0.2 4.9e-09 36.2 0.2 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|302349139|ref|YP_003816777.1| - 2.2e-08 33.7 0.3 1e-07 31.6 0.1 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|302349139|ref|YP_003816777.1| - 2.4e-05 23.7 0.9 0.023 13.9 0.0 2.6 3 0 0 3 3 3 2 Amidohydrolase family LysE PF01810.13 gi|302349140|ref|YP_003816778.1| - 1.4e-14 53.8 14.3 1.8e-14 53.5 9.9 1.1 1 0 0 1 1 1 1 LysE type translocator Methyltransf_24 PF13578.1 gi|302349141|ref|YP_003816779.1| - 3.4e-13 50.3 0.1 4.7e-13 49.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|302349141|ref|YP_003816779.1| - 7.8e-12 44.6 0.0 1e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|302349141|ref|YP_003816779.1| - 7.7e-09 36.1 0.1 1e-08 35.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302349141|ref|YP_003816779.1| - 2.9e-08 33.4 0.0 3.8e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|302349141|ref|YP_003816779.1| - 1.5e-05 24.6 0.0 2.1e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|302349141|ref|YP_003816779.1| - 3.2e-05 23.9 0.0 5.3e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|302349141|ref|YP_003816779.1| - 0.0011 19.3 0.1 0.0019 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|302349141|ref|YP_003816779.1| - 0.015 14.6 0.1 0.022 14.1 0.1 1.1 1 0 0 1 1 1 0 Methyltransferase small domain GCD14 PF08704.5 gi|302349141|ref|YP_003816779.1| - 0.089 12.2 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.12 gi|302349141|ref|YP_003816779.1| - 0.14 11.1 0.0 0.68 8.9 0.0 1.8 2 0 0 2 2 2 0 Putative methyltransferase HALZ PF02183.13 gi|302349142|ref|YP_003816780.1| - 0.0038 16.9 1.1 0.77 9.5 0.1 2.2 1 1 1 2 2 2 2 Homeobox associated leucine zipper DUF393 PF04134.7 gi|302349142|ref|YP_003816780.1| - 0.032 15.3 0.9 36 5.4 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function, DUF393 DUF4446 PF14584.1 gi|302349142|ref|YP_003816780.1| - 0.059 13.2 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) GAS PF13851.1 gi|302349142|ref|YP_003816780.1| - 0.068 12.3 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding HTH_5 PF01022.15 gi|302349143|ref|YP_003816781.1| - 3e-12 45.9 0.1 4.6e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|302349143|ref|YP_003816781.1| - 2.1e-09 37.0 0.1 3.1e-09 36.4 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|302349143|ref|YP_003816781.1| - 5e-08 32.5 0.1 1.3e-07 31.2 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|302349143|ref|YP_003816781.1| - 4.4e-07 29.3 0.0 7.3e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|302349143|ref|YP_003816781.1| - 1.4e-06 28.4 0.0 1.5e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.7 gi|302349143|ref|YP_003816781.1| - 2.5e-06 27.0 0.0 4.1e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.1 gi|302349143|ref|YP_003816781.1| - 5.5e-06 26.2 0.0 8.3e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|302349143|ref|YP_003816781.1| - 1.3e-05 24.4 0.0 2.2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|302349143|ref|YP_003816781.1| - 0.0014 18.6 0.0 0.0017 18.4 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|302349143|ref|YP_003816781.1| - 0.0014 18.1 0.2 0.0024 17.3 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain GerE PF00196.14 gi|302349143|ref|YP_003816781.1| - 0.0015 17.7 0.0 0.0022 17.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family FaeA PF04703.7 gi|302349143|ref|YP_003816781.1| - 0.0017 18.4 0.1 0.0057 16.7 0.0 1.8 1 1 1 2 2 2 1 FaeA-like protein MarR_2 PF12802.2 gi|302349143|ref|YP_003816781.1| - 0.0018 17.9 0.0 0.0032 17.0 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF2089 PF09862.4 gi|302349143|ref|YP_003816781.1| - 0.003 17.3 0.0 0.0043 16.8 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2089) GntR PF00392.16 gi|302349143|ref|YP_003816781.1| - 0.0038 16.6 0.1 0.0059 16.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|302349143|ref|YP_003816781.1| - 0.0051 16.3 0.0 0.0084 15.6 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|302349143|ref|YP_003816781.1| - 0.0062 16.4 0.0 0.0094 15.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|302349143|ref|YP_003816781.1| - 0.0079 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RP-C PF03428.8 gi|302349143|ref|YP_003816781.1| - 0.0081 15.6 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 Replication protein C N-terminal domain TFIIE_alpha PF02002.12 gi|302349143|ref|YP_003816781.1| - 0.0088 15.5 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_30 PF13556.1 gi|302349143|ref|YP_003816781.1| - 0.0094 15.5 0.1 0.014 14.9 0.1 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_45 PF14947.1 gi|302349143|ref|YP_003816781.1| - 0.011 15.5 0.0 0.015 15.1 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix DUF977 PF06163.6 gi|302349143|ref|YP_003816781.1| - 0.012 15.3 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) MerR_1 PF13411.1 gi|302349143|ref|YP_003816781.1| - 0.016 15.0 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 MerR HTH family regulatory protein Sigma70_r4_2 PF08281.7 gi|302349143|ref|YP_003816781.1| - 0.018 14.5 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|302349143|ref|YP_003816781.1| - 0.039 13.5 0.0 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.1 gi|302349143|ref|YP_003816781.1| - 0.04 13.4 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|302349143|ref|YP_003816781.1| - 0.041 14.2 0.0 0.063 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|302349143|ref|YP_003816781.1| - 0.063 12.4 0.0 0.091 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 EAP30 PF04157.11 gi|302349143|ref|YP_003816781.1| - 0.071 12.2 0.0 0.093 11.8 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_12 PF08461.5 gi|302349143|ref|YP_003816781.1| - 0.074 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF2250 PF10007.4 gi|302349143|ref|YP_003816781.1| - 0.098 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) TarH PF02203.10 gi|302349144|ref|YP_003816782.1| - 0.15 11.8 0.8 0.23 11.2 0.6 1.4 1 0 0 1 1 1 0 Tar ligand binding domain homologue 5TM-5TMR_LYT PF07694.7 gi|302349144|ref|YP_003816782.1| - 0.19 11.0 5.6 0.22 10.8 3.9 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT CopD PF05425.8 gi|302349144|ref|YP_003816782.1| - 0.89 9.7 11.4 1.1 9.4 7.9 1.1 1 0 0 1 1 1 0 Copper resistance protein D DUF4350 PF14258.1 gi|302349145|ref|YP_003816783.1| - 0.0003 20.9 0.3 0.0015 18.6 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) HTH_32 PF13565.1 gi|302349145|ref|YP_003816783.1| - 0.13 13.0 0.1 0.22 12.3 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DUF4129 PF13559.1 gi|302349146|ref|YP_003816784.1| - 0.00051 19.9 1.3 0.00066 19.5 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) TPR_11 PF13414.1 gi|302349146|ref|YP_003816784.1| - 0.12 12.0 7.2 0.11 12.1 3.8 1.9 2 0 0 2 2 2 0 TPR repeat Yip1 PF04893.12 gi|302349147|ref|YP_003816785.1| - 0.48 9.9 8.3 0.83 9.1 5.7 1.4 1 1 0 1 1 1 0 Yip1 domain DUF3804 PF12707.2 gi|302349148|ref|YP_003816786.1| - 0.12 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3804) DUF1616 PF07760.6 gi|302349149|ref|YP_003816787.1| - 1.7e-14 53.6 5.4 2.2e-14 53.2 3.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) UIM PF02809.15 gi|302349149|ref|YP_003816787.1| - 0.56 9.9 2.8 4.8 7.0 1.2 2.7 2 0 0 2 2 2 0 Ubiquitin interaction motif Thioredoxin_2 PF13098.1 gi|302349150|ref|YP_003816788.1| - 0.028 14.5 0.2 0.15 12.2 0.1 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain Toprim_4 PF13662.1 gi|302349151|ref|YP_003816789.1| - 5.2e-09 36.0 0.1 1.6e-08 34.4 0.1 1.9 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|302349151|ref|YP_003816789.1| - 0.00025 20.9 0.3 0.0013 18.6 0.0 2.4 2 1 0 2 2 2 1 Toprim domain DUF3673 PF12425.3 gi|302349151|ref|YP_003816789.1| - 0.0096 15.7 0.4 0.027 14.3 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3673) DUF1319 PF07028.6 gi|302349151|ref|YP_003816789.1| - 0.022 14.9 1.3 0.075 13.2 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1319) Toprim_2 PF13155.1 gi|302349151|ref|YP_003816789.1| - 0.067 13.5 0.0 0.18 12.1 0.0 1.8 1 0 0 1 1 1 0 Toprim-like Med30 PF11315.3 gi|302349151|ref|YP_003816789.1| - 0.16 12.0 2.6 0.27 11.3 0.4 2.1 2 0 0 2 2 2 0 Mediator complex subunit 30 PAT1 PF09770.4 gi|302349151|ref|YP_003816789.1| - 0.2 9.8 24.1 0.27 9.4 16.7 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 GCOM2 PF15328.1 gi|302349151|ref|YP_003816789.1| - 0.22 11.2 3.3 0.21 11.3 0.6 1.9 2 0 0 2 2 2 0 Putative GRINL1B complex locus protein 2 DUF935 PF06074.7 gi|302349151|ref|YP_003816789.1| - 0.82 8.3 11.2 1.3 7.6 7.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF935) DUF4106 PF13388.1 gi|302349151|ref|YP_003816789.1| - 3 6.7 16.3 4.4 6.1 10.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4106) TFIIA PF03153.8 gi|302349151|ref|YP_003816789.1| - 6 6.6 14.6 8.5 6.1 10.1 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DNA_pol_B PF00136.16 gi|302349152|ref|YP_003816790.1| - 4.9e-94 315.7 0.0 6.8e-94 315.2 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|302349152|ref|YP_003816790.1| - 1.3e-36 126.1 0.0 5e-35 120.9 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|302349152|ref|YP_003816790.1| - 8.9e-14 51.6 0.0 2.1e-13 50.4 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|302349152|ref|YP_003816790.1| - 3.8e-10 39.6 0.0 6.8e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.8 gi|302349152|ref|YP_003816790.1| - 0.0013 17.4 0.0 0.0025 16.5 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase type B, organellar and viral Nramp PF01566.13 gi|302349153|ref|YP_003816791.1| - 2.8e-43 148.1 21.9 3.6e-43 147.7 15.2 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Thymidylate_kin PF02223.12 gi|302349154|ref|YP_003816792.1| - 8.2e-42 142.6 0.0 9.8e-42 142.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|302349154|ref|YP_003816792.1| - 0.00079 19.7 0.0 0.021 15.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|302349154|ref|YP_003816792.1| - 0.0013 19.5 0.0 0.0029 18.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain dNK PF01712.14 gi|302349154|ref|YP_003816792.1| - 0.012 15.5 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_33 PF13671.1 gi|302349154|ref|YP_003816792.1| - 0.013 15.4 0.3 0.13 12.1 0.2 2.2 1 1 0 1 1 1 0 AAA domain Glyco_trans_4_4 PF13579.1 gi|302349154|ref|YP_003816792.1| - 0.41 10.7 4.6 0.26 11.4 0.6 2.1 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain Cytochrom_B_C PF00032.12 gi|302349155|ref|YP_003816793.1| - 0.0065 16.6 0.4 0.0087 16.2 0.3 1.1 1 0 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD T2SM PF04612.7 gi|302349155|ref|YP_003816793.1| - 0.012 15.3 0.0 0.066 13.0 0.0 1.8 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M BPD_transp_1 PF00528.17 gi|302349155|ref|YP_003816793.1| - 0.021 14.3 2.6 0.029 13.8 1.8 1.2 1 0 0 1 1 1 0 Binding-protein-dependent transport system inner membrane component MitoNEET_N PF10660.4 gi|302349155|ref|YP_003816793.1| - 0.023 14.5 0.1 0.034 13.9 0.1 1.3 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF973 PF06157.6 gi|302349155|ref|YP_003816793.1| - 0.031 13.2 0.6 0.034 13.1 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF1469 PF07332.6 gi|302349155|ref|YP_003816793.1| - 0.062 13.0 0.2 0.083 12.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) PIG-P PF08510.7 gi|302349155|ref|YP_003816793.1| - 0.11 12.1 0.6 1.5 8.4 0.4 2.0 1 1 0 1 1 1 0 PIG-P MFS_2 PF13347.1 gi|302349155|ref|YP_003816793.1| - 0.14 10.4 5.6 0.28 9.5 0.2 2.0 1 1 1 2 2 2 0 MFS/sugar transport protein IncA PF04156.9 gi|302349155|ref|YP_003816793.1| - 0.51 9.9 4.8 1 8.9 3.3 1.5 1 1 0 1 1 1 0 IncA protein Thioredoxin_2 PF13098.1 gi|302349156|ref|YP_003816794.1| - 1.7e-05 24.9 0.1 0.00033 20.8 0.1 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|302349156|ref|YP_003816794.1| - 0.027 14.4 0.0 0.04 13.9 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin NAD_binding_2 PF03446.10 gi|302349158|ref|YP_003816796.1| - 3.2e-27 95.3 0.8 6.3e-27 94.4 0.6 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|302349158|ref|YP_003816796.1| - 1.5e-18 67.0 0.6 3.1e-18 65.9 0.4 1.6 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|302349158|ref|YP_003816796.1| - 4.3e-11 43.0 1.1 6.1e-09 36.2 0.1 2.6 3 0 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|302349158|ref|YP_003816796.1| - 4.7e-08 32.8 0.2 1.1e-07 31.7 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|302349158|ref|YP_003816796.1| - 2.8e-07 29.8 0.0 4.2e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|302349158|ref|YP_003816796.1| - 3.4e-07 30.4 0.0 9.9e-07 28.9 0.0 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|302349158|ref|YP_003816796.1| - 3.9e-07 29.9 0.2 9.2e-07 28.7 0.1 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|302349158|ref|YP_003816796.1| - 2.5e-06 26.9 0.0 4.6e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.1 gi|302349158|ref|YP_003816796.1| - 8.6e-05 22.4 0.1 8.6e-05 22.4 0.0 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain IlvN PF07991.7 gi|302349158|ref|YP_003816796.1| - 0.00011 21.5 0.2 0.00043 19.6 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain OCD_Mu_crystall PF02423.10 gi|302349158|ref|YP_003816796.1| - 0.00016 20.5 0.1 0.00028 19.7 0.0 1.4 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family DAO PF01266.19 gi|302349158|ref|YP_003816796.1| - 0.00018 20.5 2.3 0.00027 19.9 1.6 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|302349158|ref|YP_003816796.1| - 0.00018 20.7 0.0 0.00032 19.9 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|302349158|ref|YP_003816796.1| - 0.00022 20.6 0.0 0.001 18.5 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|302349158|ref|YP_003816796.1| - 0.00087 19.3 0.2 0.0015 18.5 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding TrkA_N PF02254.13 gi|302349158|ref|YP_003816796.1| - 0.0014 18.5 0.2 0.13 12.2 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain XdhC_C PF13478.1 gi|302349158|ref|YP_003816796.1| - 0.0014 18.9 0.1 0.0054 17.0 0.0 1.9 2 0 0 2 2 2 1 XdhC Rossmann domain FAD_binding_3 PF01494.14 gi|302349158|ref|YP_003816796.1| - 0.0029 16.7 0.1 0.005 15.9 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain GFO_IDH_MocA PF01408.17 gi|302349158|ref|YP_003816796.1| - 0.004 17.6 0.1 0.0099 16.3 0.1 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Ldh_1_N PF00056.18 gi|302349158|ref|YP_003816796.1| - 0.013 15.2 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain GIDA PF01134.17 gi|302349158|ref|YP_003816796.1| - 0.043 12.6 0.3 0.06 12.2 0.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|302349158|ref|YP_003816796.1| - 0.081 12.9 0.1 0.28 11.2 0.2 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|302349158|ref|YP_003816796.1| - 0.092 12.6 0.4 0.25 11.2 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|302349158|ref|YP_003816796.1| - 0.13 12.7 0.0 0.34 11.3 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NMD3 PF04981.8 gi|302349159|ref|YP_003816797.1| - 8.9e-37 126.4 0.0 1.1e-36 126.1 0.0 1.1 1 0 0 1 1 1 1 NMD3 family eIF-1a PF01176.14 gi|302349160|ref|YP_003816798.1| - 1.8e-18 65.7 0.0 2.2e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|302349161|ref|YP_003816799.1| - 9.3e-58 194.6 0.0 1.4e-57 194.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|302349161|ref|YP_003816799.1| - 5.3e-06 26.3 1.0 0.0054 16.4 0.3 2.6 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|302349161|ref|YP_003816799.1| - 0.0034 16.4 0.0 0.035 13.1 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family KH_1 PF00013.24 gi|302349162|ref|YP_003816800.1| - 1.2e-06 28.0 7.5 5.1e-05 22.8 3.0 2.8 2 1 1 3 3 3 2 KH domain KH_3 PF13014.1 gi|302349162|ref|YP_003816800.1| - 0.0029 17.2 4.2 0.092 12.4 1.8 2.5 2 0 0 2 2 2 2 KH domain IlvN PF07991.7 gi|302349163|ref|YP_003816801.1| - 1.3e-53 180.7 0.1 1.9e-53 180.2 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|302349163|ref|YP_003816801.1| - 9.7e-09 34.6 0.0 1.8e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|302349163|ref|YP_003816801.1| - 6.8e-08 32.5 0.0 1.2e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|302349163|ref|YP_003816801.1| - 6e-07 29.8 0.0 1.3e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|302349163|ref|YP_003816801.1| - 3.5e-06 26.9 0.0 5.5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvC PF01450.14 gi|302349163|ref|YP_003816801.1| - 0.00029 20.7 0.0 0.00029 20.7 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|302349163|ref|YP_003816801.1| - 0.0019 17.9 0.2 0.16 11.7 0.1 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|302349163|ref|YP_003816801.1| - 0.15 10.8 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase MobB PF03205.9 gi|302349164|ref|YP_003816802.1| - 2.1e-05 24.2 0.0 8.6e-05 22.2 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|302349164|ref|YP_003816802.1| - 0.0027 16.9 0.0 0.0044 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|302349164|ref|YP_003816802.1| - 0.021 14.3 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|302349164|ref|YP_003816802.1| - 0.028 15.2 0.0 0.068 13.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|302349164|ref|YP_003816802.1| - 0.031 14.1 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|302349164|ref|YP_003816802.1| - 0.04 13.8 0.0 0.09 12.7 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRPRB PF09439.5 gi|302349164|ref|YP_003816802.1| - 0.048 12.8 0.0 0.071 12.3 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_22 PF13401.1 gi|302349164|ref|YP_003816802.1| - 0.07 13.2 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|302349164|ref|YP_003816802.1| - 0.093 13.0 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter PduV-EutP PF10662.4 gi|302349164|ref|YP_003816802.1| - 0.13 11.7 0.0 0.49 9.8 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Glyco_hydro_38 PF01074.17 gi|302349165|ref|YP_003816803.1| - 9.3e-72 241.5 0.0 1.3e-71 241.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.8 gi|302349165|ref|YP_003816803.1| - 1e-62 212.4 0.0 1.6e-62 211.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.6 gi|302349165|ref|YP_003816803.1| - 1.5e-17 63.5 0.1 2.7e-17 62.7 0.1 1.5 1 0 0 1 1 1 1 Alpha mannosidase, middle domain Glyco_hydro_57 PF03065.10 gi|302349165|ref|YP_003816803.1| - 0.0061 15.5 0.0 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1464 PF07318.7 gi|302349166|ref|YP_003816804.1| - 0.032 13.0 0.0 0.041 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1464) UbiD PF01977.11 gi|302349167|ref|YP_003816805.1| - 8.9e-98 327.4 0.0 1.1e-97 327.1 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase tRNA-synt_1b PF00579.20 gi|302349168|ref|YP_003816806.1| - 6.3e-46 156.8 0.0 5.1e-44 150.5 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Pyr_redox_2 PF07992.9 gi|302349169|ref|YP_003816807.1| - 9.4e-27 94.2 0.4 2.8e-11 43.7 0.0 4.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|302349169|ref|YP_003816807.1| - 2.1e-22 79.2 0.2 9.8e-22 77.0 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|302349169|ref|YP_003816807.1| - 8.2e-21 74.2 1.3 1.9e-19 69.8 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|302349169|ref|YP_003816807.1| - 3.3e-11 42.7 6.2 0.00054 18.9 0.5 3.3 3 0 0 3 3 3 3 FAD dependent oxidoreductase GIDA PF01134.17 gi|302349169|ref|YP_003816807.1| - 3.4e-11 42.6 0.8 0.0031 16.4 0.0 3.1 3 0 0 3 3 3 3 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|302349169|ref|YP_003816807.1| - 2.5e-08 34.2 0.0 2.3e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|302349169|ref|YP_003816807.1| - 1e-07 31.4 4.7 0.00056 19.1 0.1 3.2 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|302349169|ref|YP_003816807.1| - 2.7e-07 29.9 4.8 3.3e-05 23.0 0.9 2.4 2 1 0 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|302349169|ref|YP_003816807.1| - 5.1e-06 25.7 0.2 0.059 12.4 0.0 2.2 2 0 0 2 2 2 2 Thi4 family HI0933_like PF03486.9 gi|302349169|ref|YP_003816807.1| - 1.6e-05 23.5 4.5 0.14 10.5 0.1 3.1 2 1 1 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|302349169|ref|YP_003816807.1| - 1.6e-05 24.8 3.8 0.028 14.4 0.0 3.0 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|302349169|ref|YP_003816807.1| - 2.4e-05 24.0 0.8 0.001 18.7 0.2 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|302349169|ref|YP_003816807.1| - 0.00012 21.1 0.0 0.0024 16.8 0.0 1.9 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.9 gi|302349169|ref|YP_003816807.1| - 0.001 18.5 0.3 0.0028 17.0 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|302349169|ref|YP_003816807.1| - 0.0023 16.9 2.2 0.25 10.2 0.1 2.7 3 0 0 3 3 3 2 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|302349169|ref|YP_003816807.1| - 0.0026 16.6 0.2 0.0026 16.6 0.2 3.8 3 1 1 4 4 4 1 FAD binding domain NAD_binding_7 PF13241.1 gi|302349169|ref|YP_003816807.1| - 0.0084 16.3 0.3 0.14 12.3 0.1 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|302349169|ref|YP_003816807.1| - 0.014 14.5 0.0 0.033 13.3 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|302349169|ref|YP_003816807.1| - 0.022 14.3 0.0 0.055 13.0 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|302349169|ref|YP_003816807.1| - 0.024 14.4 2.0 0.32 10.8 0.1 2.3 2 0 0 2 2 2 0 ThiF family XdhC_C PF13478.1 gi|302349169|ref|YP_003816807.1| - 0.12 12.6 0.1 2.2 8.5 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain Trp_halogenase PF04820.9 gi|302349169|ref|YP_003816807.1| - 0.17 10.4 4.7 0.44 9.1 0.3 2.6 3 0 0 3 3 3 0 Tryptophan halogenase Amino_oxidase PF01593.19 gi|302349169|ref|YP_003816807.1| - 3.7 6.4 8.9 9.9 5.0 0.0 3.3 4 0 0 4 4 4 0 Flavin containing amine oxidoreductase HTH_1 PF00126.22 gi|302349170|ref|YP_003816808.1| - 0.0004 20.0 0.4 0.0012 18.5 0.3 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family UPF0102 PF02021.12 gi|302349170|ref|YP_003816808.1| - 0.0026 17.6 0.1 0.0064 16.3 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 Mrr_cat PF04471.7 gi|302349170|ref|YP_003816808.1| - 0.0035 17.1 0.3 0.013 15.3 0.1 1.9 2 0 0 2 2 2 1 Restriction endonuclease Hjc PF01870.13 gi|302349170|ref|YP_003816808.1| - 0.012 15.1 0.3 0.095 12.3 0.1 2.3 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) DUF4143 PF13635.1 gi|302349170|ref|YP_003816808.1| - 0.022 14.9 0.1 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4143) HTH_13 PF11972.3 gi|302349170|ref|YP_003816808.1| - 0.077 12.8 0.2 0.18 11.6 0.1 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_28 PF13518.1 gi|302349170|ref|YP_003816808.1| - 0.088 12.8 0.1 0.26 11.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain ABC_tran PF00005.22 gi|302349171|ref|YP_003816809.1| - 6.9e-27 94.4 0.0 9.6e-27 93.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302349171|ref|YP_003816809.1| - 2.1e-18 67.3 0.1 1.6e-16 61.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|302349171|ref|YP_003816809.1| - 4e-07 29.4 0.1 7.8e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|302349171|ref|YP_003816809.1| - 8e-05 21.9 0.0 0.016 14.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|302349171|ref|YP_003816809.1| - 0.00044 19.4 0.0 0.08 11.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|302349171|ref|YP_003816809.1| - 0.00045 19.9 0.1 0.0013 18.4 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_23 PF13476.1 gi|302349171|ref|YP_003816809.1| - 0.00066 20.0 0.0 0.00091 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|302349171|ref|YP_003816809.1| - 0.00076 18.9 0.1 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|302349171|ref|YP_003816809.1| - 0.00076 20.2 0.1 0.0021 18.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|302349171|ref|YP_003816809.1| - 0.00094 19.0 0.0 0.0025 17.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|302349171|ref|YP_003816809.1| - 0.0012 18.8 0.0 0.0018 18.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|302349171|ref|YP_003816809.1| - 0.0015 18.2 0.1 0.0025 17.5 0.1 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|302349171|ref|YP_003816809.1| - 0.0034 17.3 0.3 0.0096 15.9 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|302349171|ref|YP_003816809.1| - 0.0037 16.9 0.0 0.0067 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|302349171|ref|YP_003816809.1| - 0.0058 16.9 0.2 0.011 16.0 0.1 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|302349171|ref|YP_003816809.1| - 0.0089 15.6 0.1 0.02 14.5 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA_10 PF12846.2 gi|302349171|ref|YP_003816809.1| - 0.009 15.4 0.3 0.025 14.0 0.1 1.7 2 0 0 2 2 2 1 AAA-like domain AAA PF00004.24 gi|302349171|ref|YP_003816809.1| - 0.012 15.8 0.0 0.024 14.8 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|302349171|ref|YP_003816809.1| - 0.012 14.7 0.0 0.024 13.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|302349171|ref|YP_003816809.1| - 0.014 15.5 0.1 0.028 14.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|302349171|ref|YP_003816809.1| - 0.025 14.1 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|302349171|ref|YP_003816809.1| - 0.029 13.7 0.0 0.058 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|302349171|ref|YP_003816809.1| - 0.029 13.1 0.1 0.043 12.5 0.0 1.2 1 0 0 1 1 1 0 ArgK protein Arch_ATPase PF01637.13 gi|302349171|ref|YP_003816809.1| - 0.044 13.4 0.1 0.11 12.2 0.0 1.6 2 0 0 2 2 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|302349171|ref|YP_003816809.1| - 0.049 13.5 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|302349171|ref|YP_003816809.1| - 0.057 12.5 0.1 0.086 12.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF4102 PF13356.1 gi|302349171|ref|YP_003816809.1| - 0.068 13.0 0.1 0.2 11.5 0.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4102) Rad17 PF03215.10 gi|302349171|ref|YP_003816809.1| - 0.069 11.8 0.0 0.081 11.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NB-ARC PF00931.17 gi|302349171|ref|YP_003816809.1| - 0.075 11.8 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.14 gi|302349171|ref|YP_003816809.1| - 0.11 11.8 0.2 0.17 11.2 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|302349171|ref|YP_003816809.1| - 0.16 11.4 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.7 gi|302349171|ref|YP_003816809.1| - 0.16 11.0 0.0 0.38 9.8 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin ABC2_membrane PF01061.19 gi|302349172|ref|YP_003816810.1| - 7e-10 38.4 26.2 7e-10 38.4 18.1 1.5 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|302349172|ref|YP_003816810.1| - 0.00058 18.9 26.4 0.00058 18.9 18.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3353 PF11833.3 gi|302349172|ref|YP_003816810.1| - 5.8 6.3 8.8 5.7 6.3 5.0 1.7 1 1 0 2 2 2 0 Protein of unknown function (DUF3353) HAD_2 PF13419.1 gi|302349173|ref|YP_003816811.1| - 4.3e-19 69.4 0.0 5.2e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|302349173|ref|YP_003816811.1| - 3.9e-11 42.5 0.0 6.7e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|302349173|ref|YP_003816811.1| - 4.8e-08 33.6 0.0 9.3e-08 32.7 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_31 PF13560.1 gi|302349173|ref|YP_003816811.1| - 0.0036 17.4 2.8 1 9.6 0.1 3.5 2 1 0 2 2 2 2 Helix-turn-helix domain DUF2530 PF10745.4 gi|302349173|ref|YP_003816811.1| - 0.011 15.6 0.1 0.023 14.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) HTH_19 PF12844.2 gi|302349173|ref|YP_003816811.1| - 0.087 12.8 0.0 0.25 11.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF99 PF01949.11 gi|302349175|ref|YP_003816813.1| - 2.6e-38 131.0 0.0 3e-38 130.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Glyco_hydro_3 PF00933.16 gi|302349176|ref|YP_003816814.1| - 6.2e-71 238.8 0.0 7.6e-71 238.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|302349176|ref|YP_003816814.1| - 4.4e-45 153.9 0.0 6e-45 153.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|302349176|ref|YP_003816814.1| - 2.2e-17 62.7 0.3 4.2e-17 61.8 0.2 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain Glyco_hydro_12 PF01670.11 gi|302349178|ref|YP_003816816.1| - 6.7e-08 32.4 0.0 2.1e-06 27.5 0.0 2.3 2 0 0 2 2 2 1 Glycosyl hydrolase family 12 TMEM154 PF15102.1 gi|302349178|ref|YP_003816816.1| - 1.5 8.5 6.6 0.95 9.1 3.1 1.7 2 0 0 2 2 2 0 TMEM154 protein family ABC_tran PF00005.22 gi|302349179|ref|YP_003816817.1| - 2.6e-33 115.2 0.0 3.4e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|302349179|ref|YP_003816817.1| - 9.2e-17 61.1 0.0 1.7e-16 60.3 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|302349179|ref|YP_003816817.1| - 3.5e-09 37.0 0.2 0.00099 19.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|302349179|ref|YP_003816817.1| - 1e-06 28.9 0.1 6.2e-06 26.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|302349179|ref|YP_003816817.1| - 3.5e-05 23.8 0.0 6.7e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|302349179|ref|YP_003816817.1| - 0.00016 21.2 0.1 0.025 14.0 0.0 2.2 1 1 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|302349179|ref|YP_003816817.1| - 0.00016 21.0 0.0 0.00032 20.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|302349179|ref|YP_003816817.1| - 0.00059 19.1 0.1 0.46 9.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|302349179|ref|YP_003816817.1| - 0.00076 18.6 0.0 0.0015 17.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|302349179|ref|YP_003816817.1| - 0.0025 17.2 0.1 0.055 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|302349179|ref|YP_003816817.1| - 0.0037 17.5 0.0 0.0069 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|302349179|ref|YP_003816817.1| - 0.0051 17.3 0.0 0.011 16.2 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AAA_15 PF13175.1 gi|302349179|ref|YP_003816817.1| - 0.0082 15.2 0.0 0.017 14.2 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|302349179|ref|YP_003816817.1| - 0.016 14.9 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|302349179|ref|YP_003816817.1| - 0.028 15.2 0.0 0.049 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|302349179|ref|YP_003816817.1| - 0.029 14.0 0.0 0.057 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.4 gi|302349179|ref|YP_003816817.1| - 0.045 12.3 0.4 1.6 7.2 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class FtsK_SpoIIIE PF01580.13 gi|302349179|ref|YP_003816817.1| - 0.048 13.1 0.0 0.081 12.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family KaiC PF06745.8 gi|302349179|ref|YP_003816817.1| - 0.073 12.1 0.1 3.9 6.5 0.0 2.2 2 0 0 2 2 2 0 KaiC DUF3987 PF13148.1 gi|302349179|ref|YP_003816817.1| - 0.078 11.5 0.0 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) NB-ARC PF00931.17 gi|302349179|ref|YP_003816817.1| - 0.082 11.7 0.0 0.15 10.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain DUF87 PF01935.12 gi|302349179|ref|YP_003816817.1| - 0.11 12.2 0.1 0.35 10.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 MMR_HSR1 PF01926.18 gi|302349179|ref|YP_003816817.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|302349179|ref|YP_003816817.1| - 0.14 12.4 0.0 0.22 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|302349179|ref|YP_003816817.1| - 0.15 11.9 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|302349180|ref|YP_003816818.1| - 2.2e-22 79.8 0.0 2.9e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|302349180|ref|YP_003816818.1| - 2.6e-20 72.5 0.2 4.3e-20 71.8 0.1 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|302349180|ref|YP_003816818.1| - 1.1e-06 28.8 2.1 0.00074 19.5 1.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|302349180|ref|YP_003816818.1| - 0.0011 18.4 0.1 0.0022 17.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|302349180|ref|YP_003816818.1| - 0.0014 17.8 0.0 0.0022 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|302349180|ref|YP_003816818.1| - 0.0058 15.1 0.4 0.085 11.3 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|302349180|ref|YP_003816818.1| - 0.0099 16.1 0.1 0.031 14.5 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|302349180|ref|YP_003816818.1| - 0.011 16.5 0.0 0.023 15.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|302349180|ref|YP_003816818.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.1 gi|302349180|ref|YP_003816818.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|302349180|ref|YP_003816818.1| - 0.14 11.9 0.1 0.26 11.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|302349180|ref|YP_003816818.1| - 0.21 11.7 1.0 0.75 9.9 0.7 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|302349180|ref|YP_003816818.1| - 0.22 11.4 0.8 0.35 10.8 0.6 1.6 1 1 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.17 gi|302349181|ref|YP_003816819.1| - 3.8e-17 62.4 21.3 3.8e-17 62.4 14.8 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|302349181|ref|YP_003816819.1| - 0.00056 19.2 0.7 0.00056 19.2 0.5 2.9 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|302349182|ref|YP_003816820.1| - 9.5e-32 110.0 17.5 9.5e-32 110.0 12.2 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component EIIBC-GUT_C PF07663.6 gi|302349182|ref|YP_003816820.1| - 0.38 10.8 4.1 0.13 12.4 0.4 2.0 2 0 0 2 2 2 0 Sorbitol phosphotransferase enzyme II C-terminus SBP_bac_5 PF00496.17 gi|302349183|ref|YP_003816821.1| - 6.9e-41 140.3 12.9 6.9e-41 140.3 8.9 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Mucin PF01456.12 gi|302349183|ref|YP_003816821.1| - 0.015 15.0 45.4 0.032 13.9 31.5 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein Rifin_STEVOR PF02009.11 gi|302349183|ref|YP_003816821.1| - 0.016 14.8 1.8 0.023 14.3 1.3 1.2 1 0 0 1 1 1 0 Rifin/stevor family TMEM154 PF15102.1 gi|302349183|ref|YP_003816821.1| - 0.11 12.2 15.2 0.18 11.4 10.5 1.4 1 0 0 1 1 1 0 TMEM154 protein family Pex14_N PF04695.8 gi|302349183|ref|YP_003816821.1| - 0.74 9.8 7.0 1.5 8.8 4.9 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region AJAP1_PANP_C PF15298.1 gi|302349183|ref|YP_003816821.1| - 2.9 7.7 27.6 5 6.9 19.1 1.3 1 0 0 1 1 1 0 AJAP1/PANP C-terminus Glyco_hydro_12 PF01670.11 gi|302349184|ref|YP_003816822.1| - 2.8e-16 59.6 0.0 5.4e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 Gram_pos_anchor PF00746.16 gi|302349184|ref|YP_003816822.1| - 0.056 13.2 0.2 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Gram positive anchor PGK PF00162.14 gi|302349185|ref|YP_003816823.1| - 4e-107 358.1 0.0 4.6e-107 357.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Pyr_redox_3 PF13738.1 gi|302349185|ref|YP_003816823.1| - 0.1 12.6 0.1 4.5 7.2 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Usp PF00582.21 gi|302349186|ref|YP_003816824.1| - 1.7e-20 73.6 0.7 2.7e-20 73.0 0.5 1.3 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|302349186|ref|YP_003816824.1| - 0.0007 19.3 0.1 0.00092 18.9 0.1 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain SRP54 PF00448.17 gi|302349186|ref|YP_003816824.1| - 0.028 13.8 0.0 0.031 13.7 0.0 1.0 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MFS_1 PF07690.11 gi|302349187|ref|YP_003816825.1| - 3.5e-18 65.4 56.7 6e-18 64.6 39.3 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|302349187|ref|YP_003816825.1| - 9e-08 31.1 14.8 9e-08 31.1 10.2 2.7 1 1 1 3 3 3 3 Sugar (and other) transporter Glyco_hydro_1 PF00232.13 gi|302349188|ref|YP_003816826.1| - 5.7e-65 219.2 1.9 2.5e-54 184.2 0.0 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 UbiA PF01040.13 gi|302349189|ref|YP_003816827.1| - 1.1e-29 103.3 27.2 1.5e-29 103.0 18.9 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family UbiD PF01977.11 gi|302349190|ref|YP_003816828.1| - 1.1e-126 422.6 0.0 1.2e-126 422.4 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ABC_tran PF00005.22 gi|302349191|ref|YP_003816829.1| - 4.1e-26 91.9 0.0 7.8e-26 91.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302349191|ref|YP_003816829.1| - 3.1e-16 60.2 0.0 1.3e-08 35.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|302349191|ref|YP_003816829.1| - 1.5e-05 25.0 0.0 2.8e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|302349191|ref|YP_003816829.1| - 0.00012 21.4 0.0 0.43 9.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|302349191|ref|YP_003816829.1| - 0.0012 18.0 0.0 1.1 8.1 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain MobB PF03205.9 gi|302349191|ref|YP_003816829.1| - 0.0022 17.6 0.3 0.0064 16.1 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|302349191|ref|YP_003816829.1| - 0.0026 17.9 0.0 0.0084 16.3 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|302349191|ref|YP_003816829.1| - 0.0034 16.8 0.0 0.0068 15.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|302349191|ref|YP_003816829.1| - 0.0053 16.4 0.1 0.09 12.4 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|302349191|ref|YP_003816829.1| - 0.0077 17.0 0.2 0.014 16.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|302349191|ref|YP_003816829.1| - 0.0081 15.8 0.0 0.031 13.9 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.1 gi|302349191|ref|YP_003816829.1| - 0.012 15.8 0.2 0.055 13.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|302349191|ref|YP_003816829.1| - 0.012 14.1 0.8 4 5.9 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|302349191|ref|YP_003816829.1| - 0.014 15.7 0.0 0.022 15.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|302349191|ref|YP_003816829.1| - 0.016 15.0 0.2 0.4 10.5 0.1 2.7 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|302349191|ref|YP_003816829.1| - 0.018 14.6 0.0 0.77 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|302349191|ref|YP_003816829.1| - 0.022 13.9 0.0 0.037 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|302349191|ref|YP_003816829.1| - 0.023 14.4 0.3 0.87 9.2 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.1 gi|302349191|ref|YP_003816829.1| - 0.023 14.1 0.0 0.062 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|302349191|ref|YP_003816829.1| - 0.034 13.0 0.0 0.09 11.6 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|302349191|ref|YP_003816829.1| - 0.035 13.9 0.0 0.58 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|302349191|ref|YP_003816829.1| - 0.036 13.6 0.2 0.19 11.2 0.0 2.1 2 1 1 3 3 3 0 AAA domain AAA_18 PF13238.1 gi|302349191|ref|YP_003816829.1| - 0.039 14.2 0.0 0.53 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|302349191|ref|YP_003816829.1| - 0.044 13.5 2.4 0.072 12.8 0.1 2.4 2 1 0 2 2 2 0 Part of AAA domain Stomoxyn PF11585.3 gi|302349191|ref|YP_003816829.1| - 0.058 13.2 0.8 0.1 12.3 0.5 1.4 1 0 0 1 1 1 0 Insect antimicrobial peptide, stomoxyn DUF3584 PF12128.3 gi|302349191|ref|YP_003816829.1| - 0.12 9.7 0.0 0.16 9.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_5 PF07728.9 gi|302349191|ref|YP_003816829.1| - 0.12 12.0 0.3 0.85 9.3 0.0 2.3 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|302349191|ref|YP_003816829.1| - 0.14 11.5 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain BPD_transp_1 PF00528.17 gi|302349192|ref|YP_003816830.1| - 0.0014 18.1 11.8 0.0014 18.1 8.1 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2177 PF09945.4 gi|302349192|ref|YP_003816830.1| - 0.026 14.4 5.7 1.8 8.5 0.2 2.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2177) DUF3094 PF11293.3 gi|302349192|ref|YP_003816830.1| - 0.058 12.8 0.7 0.058 12.8 0.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3094) Phosphonate-bd PF12974.2 gi|302349193|ref|YP_003816831.1| - 2.4e-07 30.4 0.2 3.9e-07 29.7 0.1 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.1 gi|302349193|ref|YP_003816831.1| - 8e-06 25.4 2.5 1.4e-05 24.5 1.8 1.3 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|302349193|ref|YP_003816831.1| - 3.1e-05 23.3 0.0 0.00078 18.7 0.0 2.2 1 1 1 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|302349193|ref|YP_003816831.1| - 0.00025 20.7 0.0 0.00083 19.0 0.0 1.9 1 1 0 1 1 1 1 NMT1/THI5 like Complex1_51K PF01512.12 gi|302349194|ref|YP_003816832.1| - 3.7e-46 156.5 0.0 7e-46 155.6 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|302349194|ref|YP_003816832.1| - 1e-10 40.5 0.1 2.3e-10 39.4 0.1 1.7 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.4 gi|302349194|ref|YP_003816832.1| - 1e-05 25.3 0.9 3e-05 23.8 0.2 2.1 2 0 0 2 2 2 1 SLBB domain Molybdopterin PF00384.17 gi|302349195|ref|YP_003816833.1| - 4.3e-84 282.7 0.0 5.2e-84 282.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|302349195|ref|YP_003816833.1| - 7.1e-28 96.6 1.5 1.9e-27 95.2 0.0 2.2 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|302349195|ref|YP_003816833.1| - 1.2e-20 73.0 1.3 1.2e-20 73.0 0.9 2.4 3 0 0 3 3 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.1 gi|302349195|ref|YP_003816833.1| - 1.5e-16 59.9 0.2 3.5e-16 58.7 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.22 gi|302349195|ref|YP_003816833.1| - 5.9e-08 32.3 0.3 2e-07 30.6 0.2 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_21 PF14697.1 gi|302349195|ref|YP_003816833.1| - 6e-08 32.4 4.5 6e-08 32.4 3.1 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|302349195|ref|YP_003816833.1| - 1.6e-07 31.2 6.1 1.6e-07 31.2 4.3 2.3 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|302349195|ref|YP_003816833.1| - 2.1e-07 31.2 8.2 2.1e-07 31.2 5.6 2.8 4 1 0 4 4 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|302349195|ref|YP_003816833.1| - 3.4e-07 29.5 1.4 3.4e-07 29.5 1.0 3.5 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|302349195|ref|YP_003816833.1| - 3.9e-07 29.6 24.3 2.9e-05 23.7 1.1 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|302349195|ref|YP_003816833.1| - 1.4e-06 28.4 9.1 1.4e-06 28.4 6.3 3.0 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|302349195|ref|YP_003816833.1| - 5.6e-06 26.0 11.6 5.6e-06 26.0 8.1 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|302349195|ref|YP_003816833.1| - 0.00032 21.1 9.5 0.033 14.7 1.7 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|302349195|ref|YP_003816833.1| - 0.0006 19.5 25.4 0.0019 18.0 1.7 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|302349195|ref|YP_003816833.1| - 0.0037 17.9 2.4 0.0037 17.9 1.7 3.1 3 1 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|302349195|ref|YP_003816833.1| - 0.0065 16.7 3.8 0.0065 16.7 2.6 4.5 5 0 0 5 5 5 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|302349195|ref|YP_003816833.1| - 0.017 15.6 6.5 0.017 15.6 4.5 3.9 5 0 0 5 5 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|302349195|ref|YP_003816833.1| - 0.018 15.4 2.5 0.018 15.4 1.7 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer2_3 PF13085.1 gi|302349195|ref|YP_003816833.1| - 0.047 13.5 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.1 gi|302349195|ref|YP_003816833.1| - 0.088 13.1 15.3 0.21 11.9 7.6 3.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|302349195|ref|YP_003816833.1| - 0.11 12.8 11.0 2.2 8.7 1.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain NTP_transf_3 PF12804.2 gi|302349196|ref|YP_003816834.1| - 9.7e-23 81.0 0.8 9.7e-23 81.0 0.6 1.5 2 0 0 2 2 2 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|302349196|ref|YP_003816834.1| - 0.0012 18.4 0.1 0.003 17.2 0.0 1.6 2 0 0 2 2 2 1 Cytidylyltransferase IspD PF01128.14 gi|302349196|ref|YP_003816834.1| - 0.0039 16.7 0.0 0.0056 16.2 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Claudin_2 PF13903.1 gi|302349197|ref|YP_003816835.1| - 0.067 12.8 2.0 0.073 12.7 1.4 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction PGG PF13962.1 gi|302349197|ref|YP_003816835.1| - 0.1 12.1 0.2 0.1 12.1 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function DNA_gyraseA_C PF03989.8 gi|302349197|ref|YP_003816835.1| - 0.15 11.3 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 DNA gyrase C-terminal domain, beta-propeller SprT-like PF10263.4 gi|302349198|ref|YP_003816836.1| - 0.14 11.8 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 SprT-like family Pyr_redox_2 PF07992.9 gi|302349199|ref|YP_003816837.1| - 1.1e-23 84.1 0.2 2.1e-23 83.2 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|302349199|ref|YP_003816837.1| - 1.5e-21 76.6 8.6 2.6e-16 59.7 0.3 3.8 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|302349199|ref|YP_003816837.1| - 6.2e-15 55.1 0.4 2.1e-14 53.4 0.0 2.1 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|302349199|ref|YP_003816837.1| - 3e-13 50.2 0.1 6.5e-07 29.6 0.0 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|302349199|ref|YP_003816837.1| - 5.9e-12 45.1 6.3 0.0006 18.8 0.0 4.1 4 0 0 4 4 4 4 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|302349199|ref|YP_003816837.1| - 1.3e-06 28.2 0.6 0.00071 19.5 0.1 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|302349199|ref|YP_003816837.1| - 1.8e-06 27.1 0.2 1.7e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|302349199|ref|YP_003816837.1| - 4.5e-05 22.5 2.6 0.043 12.7 0.0 3.1 2 1 1 3 3 3 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|302349199|ref|YP_003816837.1| - 0.00014 20.4 3.0 0.0029 16.1 0.1 3.4 4 0 0 4 4 4 1 HI0933-like protein GIDA PF01134.17 gi|302349199|ref|YP_003816837.1| - 0.00028 19.8 6.2 0.24 10.2 0.2 3.8 5 0 0 5 5 5 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|302349199|ref|YP_003816837.1| - 0.0028 16.5 7.7 0.0066 15.3 0.1 2.6 2 1 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|302349199|ref|YP_003816837.1| - 0.0032 17.2 5.3 6.7 6.4 0.0 4.1 4 0 0 4 4 4 1 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|302349199|ref|YP_003816837.1| - 0.0094 15.0 1.8 0.22 10.5 0.2 2.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|302349199|ref|YP_003816837.1| - 0.017 15.3 0.5 3.7 7.8 0.1 2.8 1 1 1 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|302349199|ref|YP_003816837.1| - 0.029 13.0 5.5 0.048 12.2 0.1 2.8 3 0 0 3 3 3 0 Tryptophan halogenase TrkA_N PF02254.13 gi|302349199|ref|YP_003816837.1| - 0.066 13.2 0.4 8.9 6.3 0.0 3.1 3 0 0 3 3 3 0 TrkA-N domain FAD_binding_3 PF01494.14 gi|302349199|ref|YP_003816837.1| - 0.11 11.5 3.0 5.7 5.8 0.0 2.4 2 0 0 2 2 2 0 FAD binding domain DUF4129 PF13559.1 gi|302349199|ref|YP_003816837.1| - 0.13 12.2 4.8 5.5 7.0 0.6 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4129) 3HCDH_N PF02737.13 gi|302349199|ref|YP_003816837.1| - 0.19 11.3 1.5 0.51 9.9 0.2 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|302349199|ref|YP_003816837.1| - 0.23 11.0 3.0 8.3 5.9 0.0 2.8 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain KaiC PF06745.8 gi|302349200|ref|YP_003816838.1| - 1.3e-52 178.1 0.0 1.8e-52 177.7 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|302349200|ref|YP_003816838.1| - 6.1e-09 35.5 0.0 1.5e-08 34.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|302349200|ref|YP_003816838.1| - 2.4e-05 22.8 0.0 0.007 14.7 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_18 PF13238.1 gi|302349200|ref|YP_003816838.1| - 0.00017 21.8 0.0 0.0087 16.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|302349200|ref|YP_003816838.1| - 0.00076 19.3 0.0 0.0015 18.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|302349200|ref|YP_003816838.1| - 0.0012 18.8 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|302349200|ref|YP_003816838.1| - 0.0023 18.7 0.0 0.0065 17.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|302349200|ref|YP_003816838.1| - 0.0044 16.0 0.0 0.0063 15.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.10 gi|302349200|ref|YP_003816838.1| - 0.005 15.7 0.0 0.0077 15.1 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|302349200|ref|YP_003816838.1| - 0.0056 16.3 0.0 0.016 14.9 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|302349200|ref|YP_003816838.1| - 0.0058 16.2 0.3 0.24 10.9 0.1 2.2 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|302349200|ref|YP_003816838.1| - 0.0059 15.7 0.1 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.7 gi|302349200|ref|YP_003816838.1| - 0.0068 16.0 0.0 0.015 14.9 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.1 gi|302349200|ref|YP_003816838.1| - 0.013 15.6 0.0 0.034 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|302349200|ref|YP_003816838.1| - 0.034 13.5 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|302349200|ref|YP_003816838.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|302349200|ref|YP_003816838.1| - 0.094 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RecA PF00154.16 gi|302349200|ref|YP_003816838.1| - 0.11 11.5 0.5 0.27 10.2 0.3 1.6 1 1 0 1 1 1 0 recA bacterial DNA recombination protein UPF0079 PF02367.12 gi|302349200|ref|YP_003816838.1| - 0.13 11.8 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|302349200|ref|YP_003816838.1| - 0.23 10.9 0.1 0.47 9.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Peptidase_M24 PF00557.19 gi|302349201|ref|YP_003816839.1| - 2e-37 128.8 0.0 3.6e-37 127.9 0.0 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|302349201|ref|YP_003816839.1| - 7.3e-11 42.6 0.0 1.7e-10 41.4 0.0 1.7 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain EMG1 PF03587.9 gi|302349202|ref|YP_003816840.1| - 1.1e-35 122.7 0.0 1.3e-35 122.5 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Glyco_trans_4_4 PF13579.1 gi|302349202|ref|YP_003816840.1| - 0.013 15.5 2.1 0.18 11.9 0.4 2.6 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain VWA_2 PF13519.1 gi|302349202|ref|YP_003816840.1| - 0.038 14.1 0.0 0.045 13.8 0.0 1.1 1 0 0 1 1 1 0 von Willebrand factor type A domain Lactamase_B_2 PF12706.2 gi|302349203|ref|YP_003816841.1| - 1.9e-07 30.8 0.0 2.4e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|302349203|ref|YP_003816841.1| - 0.0011 18.6 1.3 0.0036 16.9 0.2 2.2 3 0 0 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|302349203|ref|YP_003816841.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Asp_Glu_race PF01177.17 gi|302349204|ref|YP_003816842.1| - 5.1e-11 42.9 0.0 6.3e-11 42.5 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase NYN PF01936.13 gi|302349204|ref|YP_003816842.1| - 0.01 16.1 0.0 0.018 15.3 0.0 1.6 1 1 0 1 1 1 0 NYN domain Radical_SAM PF04055.16 gi|302349206|ref|YP_003816844.1| - 2.8e-16 60.1 0.1 8.9e-16 58.4 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|302349206|ref|YP_003816844.1| - 3.6e-09 36.8 0.0 5.3e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|302349206|ref|YP_003816844.1| - 3.8e-07 30.1 0.0 7.6e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Gp37_Gp68 PF07505.6 gi|302349207|ref|YP_003816845.1| - 2e-14 53.4 0.0 3.8e-14 52.4 0.0 1.4 1 1 0 1 1 1 1 Phage protein Gp37/Gp68 Radical_SAM PF04055.16 gi|302349207|ref|YP_003816845.1| - 0.0077 16.4 0.0 0.016 15.4 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily HTH_20 PF12840.2 gi|302349208|ref|YP_003816846.1| - 9.6e-11 41.3 0.1 2.4e-10 40.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|302349208|ref|YP_003816846.1| - 0.0029 17.2 0.0 0.018 14.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|302349208|ref|YP_003816846.1| - 0.0058 15.9 0.0 0.013 14.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Herpes_UL56 PF04534.7 gi|302349208|ref|YP_003816846.1| - 0.078 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus UL56 protein DUF1269 PF06897.7 gi|302349208|ref|YP_003816846.1| - 0.12 12.4 0.8 23 5.0 0.8 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) ABC_tran PF00005.22 gi|302349210|ref|YP_003816848.1| - 3e-29 102.0 0.0 4.8e-29 101.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302349210|ref|YP_003816848.1| - 3.5e-14 53.4 0.0 6.5e-10 39.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|302349210|ref|YP_003816848.1| - 0.00051 20.0 0.6 0.0035 17.3 0.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|302349210|ref|YP_003816848.1| - 0.00067 19.8 0.0 0.0043 17.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|302349210|ref|YP_003816848.1| - 0.0008 18.8 0.0 0.27 10.6 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_15 PF13175.1 gi|302349210|ref|YP_003816848.1| - 0.0011 18.1 0.0 0.14 11.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|302349210|ref|YP_003816848.1| - 0.0012 18.1 0.0 1.3 8.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|302349210|ref|YP_003816848.1| - 0.0018 18.1 0.0 0.013 15.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|302349210|ref|YP_003816848.1| - 0.0022 16.8 0.0 0.0037 16.0 0.0 1.3 1 0 0 1 1 1 1 ArgK protein UPF0079 PF02367.12 gi|302349210|ref|YP_003816848.1| - 0.0023 17.5 0.1 0.0042 16.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|302349210|ref|YP_003816848.1| - 0.0045 16.4 0.0 0.083 12.3 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain BCA_ABC_TP_C PF12399.3 gi|302349210|ref|YP_003816848.1| - 0.0045 16.6 0.1 0.014 15.1 0.0 1.9 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter DUF258 PF03193.11 gi|302349210|ref|YP_003816848.1| - 0.0054 15.9 0.0 0.0071 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|302349210|ref|YP_003816848.1| - 0.0067 16.3 0.1 0.018 14.9 0.0 1.8 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|302349210|ref|YP_003816848.1| - 0.0095 15.4 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|302349210|ref|YP_003816848.1| - 0.012 15.3 0.4 0.3 10.7 0.0 2.7 2 1 1 3 3 3 0 NTPase AAA PF00004.24 gi|302349210|ref|YP_003816848.1| - 0.012 15.8 0.0 0.055 13.6 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|302349210|ref|YP_003816848.1| - 0.013 15.1 0.0 0.032 13.8 0.0 1.6 2 0 0 2 2 1 0 NACHT domain AAA_19 PF13245.1 gi|302349210|ref|YP_003816848.1| - 0.022 14.5 0.1 0.1 12.3 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|302349210|ref|YP_003816848.1| - 0.024 14.0 0.8 0.063 12.6 0.1 2.3 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|302349210|ref|YP_003816848.1| - 0.026 14.2 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_28 PF13521.1 gi|302349210|ref|YP_003816848.1| - 0.026 14.4 0.7 0.17 11.8 0.0 2.5 2 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|302349210|ref|YP_003816848.1| - 0.038 13.4 0.0 0.061 12.7 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|302349210|ref|YP_003816848.1| - 0.04 13.8 0.0 0.13 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|302349210|ref|YP_003816848.1| - 0.051 13.9 0.0 0.08 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|302349210|ref|YP_003816848.1| - 0.059 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|302349210|ref|YP_003816848.1| - 0.12 12.0 0.3 0.92 9.2 0.0 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|302349210|ref|YP_003816848.1| - 0.77 10.5 3.9 9.4 7.0 2.7 2.4 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|302349211|ref|YP_003816849.1| - 1.5e-12 47.1 22.8 1.5e-12 47.1 15.8 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|302349211|ref|YP_003816849.1| - 2.4e-07 30.1 17.9 2.4e-07 30.1 12.4 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein Glycos_transf_1 PF00534.15 gi|302349212|ref|YP_003816850.1| - 1.5e-18 66.8 0.0 2.3e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|302349212|ref|YP_003816850.1| - 4.1e-10 39.9 0.2 1.1e-09 38.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|302349212|ref|YP_003816850.1| - 5.1e-05 23.4 0.0 0.00026 21.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|302349212|ref|YP_003816850.1| - 6.4e-05 22.7 0.2 0.0019 17.9 0.1 2.7 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|302349212|ref|YP_003816850.1| - 0.0004 20.5 7.2 0.0004 20.5 5.0 2.8 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_hydro_12 PF01670.11 gi|302349213|ref|YP_003816851.1| - 6.7e-15 55.2 0.0 1.3e-14 54.3 0.0 1.4 2 0 0 2 2 2 1 Glycosyl hydrolase family 12 GluR_Homer-bdg PF10606.4 gi|302349213|ref|YP_003816851.1| - 0.07 13.0 0.1 0.21 11.5 0.0 1.8 1 0 0 1 1 1 0 Homer-binding domain of metabotropic glutamate receptor SBP_bac_5 PF00496.17 gi|302349214|ref|YP_003816852.1| - 1.3e-44 152.5 6.6 2.2e-44 151.8 4.6 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PKD PF00801.15 gi|302349214|ref|YP_003816852.1| - 1.2e-05 24.8 4.0 0.00023 20.8 0.1 4.1 3 1 0 3 3 3 1 PKD domain PNGaseA PF12222.3 gi|302349215|ref|YP_003816853.1| - 2.7e-96 323.0 7.4 3.7e-96 322.6 5.1 1.1 1 0 0 1 1 1 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A Glug PF07581.7 gi|302349215|ref|YP_003816853.1| - 3.2 8.1 7.0 1.9 8.8 0.4 3.4 3 0 0 3 3 3 0 The GLUG motif AA_permease_2 PF13520.1 gi|302349216|ref|YP_003816854.1| - 1.7e-20 73.0 49.0 2.3e-20 72.5 33.9 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|302349216|ref|YP_003816854.1| - 1.1e-17 63.5 46.1 1.5e-17 63.1 31.9 1.1 1 0 0 1 1 1 1 Amino acid permease MFS_1 PF07690.11 gi|302349217|ref|YP_003816855.1| - 1.6e-05 23.7 44.9 1.6e-05 23.7 31.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily SseC PF04888.7 gi|302349217|ref|YP_003816855.1| - 1 8.6 5.9 1.7 7.8 4.1 1.3 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family Pro-kuma_activ PF09286.6 gi|302349218|ref|YP_003816856.1| - 2.8e-19 69.5 0.0 7.4e-19 68.2 0.0 1.8 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.17 gi|302349218|ref|YP_003816856.1| - 2.3e-09 36.8 1.5 4.8e-09 35.7 1.1 1.5 1 0 0 1 1 1 1 Subtilase family Bacillus_HBL PF05791.6 gi|302349218|ref|YP_003816856.1| - 0.044 13.1 1.0 0.072 12.4 0.7 1.2 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) FlxA PF14282.1 gi|302349218|ref|YP_003816856.1| - 0.24 11.3 1.2 0.38 10.7 0.8 1.2 1 0 0 1 1 1 0 FlxA-like protein COG2 PF06148.6 gi|302349218|ref|YP_003816856.1| - 0.66 9.8 2.2 1.1 9.0 1.5 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 HAUS-augmin3 PF14932.1 gi|302349218|ref|YP_003816856.1| - 0.76 8.9 1.9 1.1 8.3 1.3 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 SBP_bac_1 PF01547.20 gi|302349219|ref|YP_003816857.1| - 2.6e-15 56.9 1.0 2.6e-15 56.9 0.7 2.2 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|302349219|ref|YP_003816857.1| - 1.4e-12 47.9 5.6 1.1e-05 25.3 0.4 2.6 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein DUF3112 PF11309.3 gi|302349219|ref|YP_003816857.1| - 0.052 13.3 0.7 0.11 12.3 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) SBP_bac_6 PF13343.1 gi|302349219|ref|YP_003816857.1| - 0.055 12.7 0.1 0.2 10.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein DUF1628 PF07790.6 gi|302349219|ref|YP_003816857.1| - 0.14 12.9 1.6 0.34 11.7 1.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) SoxE PF06525.6 gi|302349219|ref|YP_003816857.1| - 2.4 7.4 13.3 0.15 11.3 5.5 1.8 2 1 0 2 2 2 0 Sulfocyanin (SoxE) SBP_bac_1 PF01547.20 gi|302349220|ref|YP_003816858.1| - 7.6e-23 81.7 1.6 9.7e-23 81.3 0.2 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Aldedh PF00171.17 gi|302349221|ref|YP_003816859.1| - 2.8e-121 405.0 0.0 3.2e-121 404.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|302349221|ref|YP_003816859.1| - 2.2e-08 33.2 0.0 3.7e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF3420 PF11900.3 gi|302349222|ref|YP_003816860.1| - 0.0056 16.7 0.5 0.012 15.6 0.1 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF3420) Catalase-rel PF06628.7 gi|302349222|ref|YP_003816860.1| - 0.012 15.4 0.1 0.047 13.5 0.0 1.9 1 1 1 2 2 2 0 Catalase-related immune-responsive NblA PF04485.7 gi|302349222|ref|YP_003816860.1| - 0.072 12.9 0.6 0.68 9.8 0.3 2.3 1 1 1 2 2 2 0 Phycobilisome degradation protein nblA DUF4423 PF14394.1 gi|302349222|ref|YP_003816860.1| - 0.11 12.0 0.5 0.45 10.0 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) NUDIX PF00293.23 gi|302349223|ref|YP_003816861.1| - 3.7e-16 58.9 0.6 5.9e-16 58.3 0.4 1.3 1 1 0 1 1 1 1 NUDIX domain Pyr_redox_2 PF07992.9 gi|302349224|ref|YP_003816862.1| - 3.8e-20 72.6 0.0 7.8e-20 71.6 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|302349224|ref|YP_003816862.1| - 1.3e-08 34.1 3.9 0.00079 18.4 0.4 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|302349224|ref|YP_003816862.1| - 1.9e-08 34.6 0.1 0.022 14.8 0.3 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|302349224|ref|YP_003816862.1| - 9.1e-07 29.1 5.1 0.00013 22.3 0.5 3.4 2 2 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|302349224|ref|YP_003816862.1| - 2.7e-06 27.3 0.6 2.7e-06 27.3 0.4 1.7 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|302349224|ref|YP_003816862.1| - 6.8e-06 25.7 0.1 4.3e-05 23.1 0.0 2.0 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|302349224|ref|YP_003816862.1| - 5.2e-05 23.3 0.0 0.23 11.5 0.0 3.2 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|302349224|ref|YP_003816862.1| - 0.00049 19.8 0.4 0.001 18.7 0.3 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|302349224|ref|YP_003816862.1| - 0.002 16.6 0.5 0.002 16.6 0.4 1.8 3 0 0 3 3 3 1 HI0933-like protein DJ-1_PfpI PF01965.19 gi|302349224|ref|YP_003816862.1| - 0.0032 16.9 1.1 0.046 13.1 0.2 2.6 2 1 1 3 3 3 1 DJ-1/PfpI family FAD_binding_2 PF00890.19 gi|302349224|ref|YP_003816862.1| - 0.005 15.7 1.0 0.037 12.8 0.4 2.4 3 0 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.14 gi|302349224|ref|YP_003816862.1| - 0.0061 15.6 0.1 0.013 14.5 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|302349224|ref|YP_003816862.1| - 0.011 14.5 0.4 0.21 10.3 0.2 2.3 2 0 0 2 2 2 0 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.14 gi|302349224|ref|YP_003816862.1| - 0.012 14.7 0.1 0.085 12.0 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|302349224|ref|YP_003816862.1| - 0.029 14.6 2.9 0.16 12.2 0.2 2.8 2 1 0 2 2 2 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|302349224|ref|YP_003816862.1| - 0.036 13.4 2.1 0.45 9.8 1.4 2.2 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|302349224|ref|YP_003816862.1| - 0.055 13.3 0.7 0.3 10.9 0.2 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|302349224|ref|YP_003816862.1| - 0.076 13.0 0.3 3 7.7 0.0 2.2 2 0 0 2 2 2 0 NADH(P)-binding IlvN PF07991.7 gi|302349224|ref|YP_003816862.1| - 0.078 12.3 0.9 0.23 10.7 0.1 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|302349224|ref|YP_003816862.1| - 0.084 12.6 0.6 0.22 11.2 0.4 1.8 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LcnG-beta PF11632.3 gi|302349224|ref|YP_003816862.1| - 0.13 11.9 0.1 0.31 10.8 0.1 1.6 1 0 0 1 1 1 0 Lactococcin G-beta Thi4 PF01946.12 gi|302349224|ref|YP_003816862.1| - 0.38 9.7 2.6 0.21 10.6 0.1 1.7 2 0 0 2 2 2 0 Thi4 family AdoHcyase_NAD PF00670.16 gi|302349224|ref|YP_003816862.1| - 0.48 10.2 2.2 3.4 7.4 0.4 2.3 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TusA PF01206.12 gi|302349226|ref|YP_003816864.1| - 0.033 13.7 0.0 0.035 13.7 0.0 1.0 1 0 0 1 1 1 0 Sulfurtransferase TusA TonB_2 PF13103.1 gi|302349226|ref|YP_003816864.1| - 0.11 12.4 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 TonB C terminal Methyltransf_11 PF08241.7 gi|302349227|ref|YP_003816865.1| - 3.2e-14 53.1 0.0 7.6e-14 51.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|302349227|ref|YP_003816865.1| - 8.8e-10 38.0 0.0 1.2e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|302349227|ref|YP_003816865.1| - 1.8e-07 31.0 0.0 2.2e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|302349227|ref|YP_003816865.1| - 3.5e-07 30.4 0.0 9.8e-07 29.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302349227|ref|YP_003816865.1| - 8.8e-07 28.6 0.0 1.4e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|302349227|ref|YP_003816865.1| - 2.4e-06 28.1 0.0 4.5e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|302349227|ref|YP_003816865.1| - 1.4e-05 25.4 0.0 2.5e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|302349227|ref|YP_003816865.1| - 0.0012 18.8 0.3 0.0022 18.0 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|302349227|ref|YP_003816865.1| - 0.042 13.8 0.0 0.071 13.1 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Nol1_Nop2_Fmu PF01189.12 gi|302349227|ref|YP_003816865.1| - 0.064 12.6 0.0 0.09 12.1 0.0 1.1 1 0 0 1 1 1 0 NOL1/NOP2/sun family MTS PF05175.9 gi|302349227|ref|YP_003816865.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase small domain vATP-synt_AC39 PF01992.11 gi|302349228|ref|YP_003816866.1| - 0.00032 19.9 0.1 0.005 16.0 0.0 2.1 2 0 0 2 2 2 2 ATP synthase (C/AC39) subunit SF-assemblin PF06705.6 gi|302349229|ref|YP_003816867.1| - 0.0018 17.5 6.4 0.0022 17.2 4.4 1.0 1 0 0 1 1 1 1 SF-assemblin/beta giardin DUF2267 PF10025.4 gi|302349229|ref|YP_003816867.1| - 0.0031 17.5 2.6 0.0053 16.8 1.8 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) DUF1864 PF08933.6 gi|302349229|ref|YP_003816867.1| - 0.0078 14.7 1.6 0.028 12.9 0.3 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF1864) Apolipoprotein PF01442.13 gi|302349229|ref|YP_003816867.1| - 0.0086 15.6 9.8 0.017 14.6 6.8 1.4 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Caldesmon PF02029.10 gi|302349229|ref|YP_003816867.1| - 0.013 13.9 3.9 0.014 13.8 2.7 1.1 1 0 0 1 1 1 0 Caldesmon HGD-D PF06050.8 gi|302349229|ref|YP_003816867.1| - 0.014 14.2 0.2 0.045 12.5 0.0 1.7 1 1 1 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component ISG65-75 PF11727.3 gi|302349229|ref|YP_003816867.1| - 0.016 14.3 5.9 0.017 14.1 4.1 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein Mitofilin PF09731.4 gi|302349229|ref|YP_003816867.1| - 0.022 13.4 7.3 0.023 13.3 5.1 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein OmpH PF03938.9 gi|302349229|ref|YP_003816867.1| - 0.054 13.4 9.4 0.067 13.1 6.5 1.0 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HTH_16 PF12645.2 gi|302349229|ref|YP_003816867.1| - 0.1 12.5 0.2 0.49 10.3 0.0 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain hDGE_amylase PF14701.1 gi|302349229|ref|YP_003816867.1| - 0.14 11.0 2.3 0.17 10.7 1.6 1.0 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme DUF607 PF04678.8 gi|302349229|ref|YP_003816867.1| - 0.16 11.8 2.2 0.19 11.6 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF607 ApoLp-III PF07464.6 gi|302349229|ref|YP_003816867.1| - 0.18 11.7 8.7 0.32 11.0 6.0 1.4 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) RapA_C PF12137.3 gi|302349229|ref|YP_003816867.1| - 0.22 10.2 4.1 0.33 9.7 2.9 1.4 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal Atg14 PF10186.4 gi|302349229|ref|YP_003816867.1| - 0.33 9.8 3.3 0.39 9.5 2.3 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Mt_ATP-synt_B PF05405.9 gi|302349229|ref|YP_003816867.1| - 0.42 10.0 6.9 0.9 8.9 4.8 1.6 1 1 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) AAA_13 PF13166.1 gi|302349229|ref|YP_003816867.1| - 0.44 8.9 4.2 0.5 8.7 2.9 1.0 1 0 0 1 1 1 0 AAA domain Exonuc_VII_L PF02601.10 gi|302349229|ref|YP_003816867.1| - 0.77 8.8 4.7 1.1 8.3 3.3 1.3 1 1 0 1 1 1 0 Exonuclease VII, large subunit LUC7 PF03194.10 gi|302349229|ref|YP_003816867.1| - 1.1 8.7 5.4 1.3 8.4 3.7 1.1 1 0 0 1 1 1 0 LUC7 N_terminus FUSC PF04632.7 gi|302349229|ref|YP_003816867.1| - 1.2 7.4 5.7 1.5 7.1 4.0 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF1451 PF07295.6 gi|302349229|ref|YP_003816867.1| - 1.4 8.6 4.5 2.1 8.1 3.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1451) CCDC-167 PF15188.1 gi|302349229|ref|YP_003816867.1| - 1.7 8.6 7.0 6.9 6.7 4.1 2.0 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 DUF883 PF05957.8 gi|302349229|ref|YP_003816867.1| - 2.1 8.8 12.3 3.4 8.1 5.9 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) SBP_bac_7 PF03480.8 gi|302349229|ref|YP_003816867.1| - 2.2 7.2 5.3 1.9 7.5 2.9 1.3 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 DUF4404 PF14357.1 gi|302349229|ref|YP_003816867.1| - 2.6 8.5 7.7 59 4.1 5.5 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) KfrA_N PF11740.3 gi|302349229|ref|YP_003816867.1| - 4.6 7.7 16.1 12 6.3 10.8 1.9 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term PhoU PF01895.14 gi|302349229|ref|YP_003816867.1| - 4.6 7.7 7.2 3 8.3 2.3 2.0 1 1 1 2 2 2 0 PhoU domain HSCB_C PF07743.8 gi|302349229|ref|YP_003816867.1| - 6.9 7.2 10.2 17 5.9 4.3 2.4 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain UPRTase PF14681.1 gi|302349230|ref|YP_003816868.1| - 5.3e-45 153.1 0.0 6.4e-45 152.8 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|302349230|ref|YP_003816868.1| - 3.6e-05 23.5 0.1 5.6e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain ECH PF00378.15 gi|302349231|ref|YP_003816869.1| - 1.1e-36 126.1 0.1 1.2e-36 126.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ApoLp-III PF07464.6 gi|302349231|ref|YP_003816869.1| - 0.042 13.8 0.1 0.075 13.0 0.1 1.3 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) HupE_UreJ_2 PF13795.1 gi|302349232|ref|YP_003816870.1| - 0.016 14.6 0.2 0.02 14.3 0.1 1.1 1 0 0 1 1 1 0 HupE / UreJ protein CoA_transf_3 PF02515.12 gi|302349233|ref|YP_003816871.1| - 3.3e-51 173.2 0.0 6.4e-51 172.3 0.0 1.5 1 0 0 1 1 1 1 CoA-transferase family III HpcH_HpaI PF03328.9 gi|302349234|ref|YP_003816872.1| - 1.7e-35 121.8 0.4 1.4e-18 66.5 0.0 2.3 3 0 0 3 3 3 2 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|302349234|ref|YP_003816872.1| - 3.5e-15 55.6 0.0 2.1e-08 33.3 0.0 2.2 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold MFS_1 PF07690.11 gi|302349235|ref|YP_003816873.1| - 5.1e-25 87.9 47.0 5.1e-25 87.9 32.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|302349235|ref|YP_003816873.1| - 8.9e-21 73.9 37.3 4.7e-19 68.2 7.3 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|302349235|ref|YP_003816873.1| - 0.0049 15.3 31.9 0.067 11.5 1.8 2.6 1 1 0 2 2 2 2 MFS/sugar transport protein GHMP_kinases_C PF08544.8 gi|302349236|ref|YP_003816874.1| - 5e-19 68.2 1.1 8.5e-19 67.5 0.2 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|302349236|ref|YP_003816874.1| - 4.2e-18 65.1 5.1 4.2e-18 65.1 3.6 2.3 3 0 0 3 3 3 1 GHMP kinases N terminal domain GCD14 PF08704.5 gi|302349237|ref|YP_003816875.1| - 2.3e-27 96.0 0.0 5.1e-27 94.9 0.0 1.5 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|302349237|ref|YP_003816875.1| - 1.6e-08 34.6 0.1 3.1e-08 33.6 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|302349237|ref|YP_003816875.1| - 1.6e-08 34.3 0.0 2.4e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|302349237|ref|YP_003816875.1| - 3.9e-08 33.0 0.0 5.1e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|302349237|ref|YP_003816875.1| - 8.1e-07 29.6 0.0 1.2e-06 29.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|302349237|ref|YP_003816875.1| - 0.00018 20.6 0.0 0.00025 20.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|302349237|ref|YP_003816875.1| - 0.00027 20.3 0.0 0.00037 19.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|302349237|ref|YP_003816875.1| - 0.00077 20.2 0.0 0.0016 19.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|302349237|ref|YP_003816875.1| - 0.0014 17.7 0.0 0.0019 17.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.7 gi|302349237|ref|YP_003816875.1| - 0.013 16.0 0.0 0.025 15.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|302349237|ref|YP_003816875.1| - 0.023 14.1 0.0 0.033 13.6 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_25 PF13649.1 gi|302349237|ref|YP_003816875.1| - 0.024 14.9 0.0 0.036 14.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|302349237|ref|YP_003816875.1| - 0.024 13.7 0.0 0.046 12.8 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|302349237|ref|YP_003816875.1| - 0.05 13.3 0.0 0.18 11.5 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Fer2_3 PF13085.1 gi|302349238|ref|YP_003816876.1| - 2.3e-37 127.1 0.0 4.3e-37 126.3 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|302349238|ref|YP_003816876.1| - 2.1e-07 30.8 4.0 2.1e-07 30.8 2.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|302349238|ref|YP_003816876.1| - 4.5e-07 30.1 2.4 4.5e-07 30.1 1.7 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer2 PF00111.22 gi|302349238|ref|YP_003816876.1| - 2.5e-06 27.1 0.4 2.5e-06 27.1 0.2 2.1 3 0 0 3 3 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_9 PF13187.1 gi|302349238|ref|YP_003816876.1| - 9.2e-05 22.6 6.4 0.0022 18.1 0.2 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|302349238|ref|YP_003816876.1| - 0.00012 21.5 3.4 0.00012 21.5 2.4 3.7 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|302349238|ref|YP_003816876.1| - 0.00015 22.0 7.7 0.029 14.8 0.6 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|302349238|ref|YP_003816876.1| - 0.00023 20.8 12.4 0.00031 20.4 5.3 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer2_4 PF13510.1 gi|302349238|ref|YP_003816876.1| - 0.00027 20.6 0.2 0.00053 19.7 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.2 gi|302349238|ref|YP_003816876.1| - 0.0016 18.7 15.1 0.002 18.4 7.4 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|302349238|ref|YP_003816876.1| - 0.0044 16.6 0.8 1.7 8.3 0.0 2.3 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.1 gi|302349238|ref|YP_003816876.1| - 0.0047 16.7 0.3 0.0047 16.7 0.2 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|302349238|ref|YP_003816876.1| - 0.008 16.0 2.7 0.008 16.0 1.9 2.9 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|302349238|ref|YP_003816876.1| - 0.018 14.9 15.1 0.02 14.7 0.8 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|302349238|ref|YP_003816876.1| - 0.037 14.3 1.3 0.037 14.3 0.9 3.4 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|302349238|ref|YP_003816876.1| - 2.5 8.7 6.6 2.9 8.5 0.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Sdh_cyt PF01127.17 gi|302349239|ref|YP_003816877.1| - 1.9e-07 30.9 11.2 2.2e-07 30.7 7.7 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Tetraspannin PF00335.15 gi|302349239|ref|YP_003816877.1| - 6 6.0 8.0 8 5.6 5.6 1.1 1 0 0 1 1 1 0 Tetraspanin family Sdh_cyt PF01127.17 gi|302349240|ref|YP_003816878.1| - 1.2e-09 38.0 7.6 2e-09 37.2 5.3 1.4 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PepSY_TM_2 PF13703.1 gi|302349240|ref|YP_003816878.1| - 0.024 14.8 0.3 0.024 14.8 0.2 2.8 3 0 0 3 3 3 0 PepSY-associated TM helix DUF2842 PF11003.3 gi|302349240|ref|YP_003816878.1| - 7.6 6.4 11.2 3.1 7.7 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2842) FAD_binding_2 PF00890.19 gi|302349241|ref|YP_003816879.1| - 5.5e-102 341.7 0.1 6.7e-102 341.4 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|302349241|ref|YP_003816879.1| - 1.6e-40 137.9 0.1 2.4e-40 137.3 0.1 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|302349241|ref|YP_003816879.1| - 7.7e-05 22.6 0.8 0.0019 18.0 0.1 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|302349241|ref|YP_003816879.1| - 8.1e-05 21.6 0.6 0.00016 20.6 0.4 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|302349241|ref|YP_003816879.1| - 0.0057 15.7 0.6 0.46 9.5 0.1 2.3 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|302349241|ref|YP_003816879.1| - 0.0064 15.0 0.1 0.75 8.2 0.0 2.8 3 0 0 3 3 3 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|302349241|ref|YP_003816879.1| - 0.016 14.1 0.1 0.082 11.8 0.1 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|302349241|ref|YP_003816879.1| - 0.048 13.6 0.7 0.18 11.8 0.1 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|302349241|ref|YP_003816879.1| - 0.1 11.4 0.1 0.22 10.3 0.1 1.5 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|302349241|ref|YP_003816879.1| - 0.15 11.8 0.5 17 5.1 0.1 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding GCV_H PF01597.14 gi|302349243|ref|YP_003816881.1| - 1.1e-38 131.6 0.8 1.3e-38 131.4 0.6 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|302349243|ref|YP_003816881.1| - 1.5e-06 27.7 1.9 6.4e-06 25.7 0.3 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|302349243|ref|YP_003816881.1| - 0.016 14.9 0.2 0.027 14.1 0.0 1.5 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain RE_Bpu10I PF09549.5 gi|302349243|ref|YP_003816881.1| - 0.064 12.8 0.0 6.4 6.2 0.0 2.1 2 0 0 2 2 2 0 Bpu10I restriction endonuclease PmbA_TldD PF01523.11 gi|302349244|ref|YP_003816882.1| - 1e-48 166.0 2.6 1.3e-48 165.8 1.8 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|302349245|ref|YP_003816883.1| - 8.6e-39 133.5 0.0 1e-38 133.2 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Mucin PF01456.12 gi|302349246|ref|YP_003816884.1| - 0.084 12.6 12.4 0.13 12.0 8.6 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF3439 PF11921.3 gi|302349246|ref|YP_003816884.1| - 0.26 11.0 5.9 0.43 10.3 4.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) CitMHS PF03600.11 gi|302349247|ref|YP_003816885.1| - 5.7e-28 97.5 0.0 2.2e-24 85.7 0.0 2.0 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|302349247|ref|YP_003816885.1| - 3e-13 49.1 3.1 1.9e-07 30.5 0.1 2.6 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|302349247|ref|YP_003816885.1| - 1e-10 41.1 22.0 4e-06 25.9 6.3 2.6 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region MFS_1 PF07690.11 gi|302349248|ref|YP_003816886.1| - 1.8e-13 49.9 55.3 1.3e-11 43.8 18.5 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|302349248|ref|YP_003816886.1| - 1.4e-11 43.6 11.8 1.4e-11 43.6 8.2 2.7 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|302349248|ref|YP_003816886.1| - 0.00037 18.9 5.6 0.00037 18.9 3.9 2.6 2 1 0 2 2 2 1 MFS/sugar transport protein Aminotran_5 PF00266.14 gi|302349249|ref|YP_003816887.1| - 5.7e-28 97.7 0.0 6.8e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|302349249|ref|YP_003816887.1| - 0.009 15.0 0.3 0.013 14.5 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Peptidase_M28 PF04389.12 gi|302349250|ref|YP_003816888.1| - 3.5e-13 49.6 0.0 6.5e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 DUF2172 PF09940.4 gi|302349250|ref|YP_003816888.1| - 7.3e-08 31.1 0.0 1.6e-05 23.5 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF2172) DUF3311 PF11755.3 gi|302349252|ref|YP_003816890.1| - 2.6e-18 65.3 4.8 2.7e-18 65.2 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) Ribosomal_L29 PF00831.18 gi|302349253|ref|YP_003816891.1| - 0.012 15.3 2.1 0.037 13.7 1.5 1.9 1 1 0 1 1 1 0 Ribosomal L29 protein HTH_21 PF13276.1 gi|302349253|ref|YP_003816891.1| - 0.047 13.7 1.1 0.091 12.7 0.8 1.6 1 1 0 1 1 1 0 HTH-like domain WD40_alt PF14077.1 gi|302349253|ref|YP_003816891.1| - 0.12 12.0 0.3 0.25 11.0 0.2 1.6 1 0 0 1 1 1 0 Alternative WD40 repeat motif MutS_II PF05188.12 gi|302349253|ref|YP_003816891.1| - 0.34 10.9 1.8 0.35 10.9 0.1 1.8 2 0 0 2 2 2 0 MutS domain II Flavin_Reduct PF01613.13 gi|302349254|ref|YP_003816892.1| - 3.7e-26 91.8 0.0 4.3e-26 91.6 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain CMAS PF02353.15 gi|302349255|ref|YP_003816893.1| - 4.8e-11 42.2 0.0 6.1e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.2 gi|302349255|ref|YP_003816893.1| - 3e-10 40.6 0.0 4.5e-10 40.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|302349255|ref|YP_003816893.1| - 4.8e-10 39.2 0.0 7.4e-10 38.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|302349255|ref|YP_003816893.1| - 5.8e-10 38.8 0.0 4e-09 36.0 0.0 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_26 PF13659.1 gi|302349255|ref|YP_003816893.1| - 1.4e-08 34.7 0.0 1.8e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|302349255|ref|YP_003816893.1| - 4e-08 32.5 0.0 5e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|302349255|ref|YP_003816893.1| - 5e-08 33.2 0.0 6.6e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|302349255|ref|YP_003816893.1| - 4.8e-07 29.0 0.0 6.4e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|302349255|ref|YP_003816893.1| - 5.5e-06 26.0 0.0 7.1e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.7 gi|302349255|ref|YP_003816893.1| - 6.4e-06 26.5 0.0 9.9e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|302349255|ref|YP_003816893.1| - 7.6e-06 25.2 0.0 1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase MTS PF05175.9 gi|302349255|ref|YP_003816893.1| - 8.3e-05 22.0 0.0 0.00012 21.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|302349255|ref|YP_003816893.1| - 0.00025 20.2 0.0 0.00034 19.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.13 gi|302349255|ref|YP_003816893.1| - 0.0011 18.5 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 DUF633 PF04816.7 gi|302349255|ref|YP_003816893.1| - 0.0013 18.1 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF633) PrmA PF06325.8 gi|302349255|ref|YP_003816893.1| - 0.0019 17.3 0.0 0.0021 17.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|302349255|ref|YP_003816893.1| - 0.01 15.4 0.0 0.012 15.1 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|302349255|ref|YP_003816893.1| - 0.011 16.1 0.0 0.016 15.6 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|302349255|ref|YP_003816893.1| - 0.016 14.9 0.0 0.02 14.6 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|302349255|ref|YP_003816893.1| - 0.091 12.1 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Helicase_RecD PF05127.9 gi|302349256|ref|YP_003816894.1| - 8e-54 181.9 0.0 2.5e-53 180.3 0.0 1.9 3 0 0 3 3 3 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|302349256|ref|YP_003816894.1| - 7.7e-48 162.4 0.0 1.3e-46 158.4 0.0 2.6 2 1 0 2 2 2 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|302349256|ref|YP_003816894.1| - 1.1e-24 85.9 0.0 2.6e-24 84.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.19 gi|302349256|ref|YP_003816894.1| - 6e-08 32.6 0.1 2.5e-07 30.6 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|302349256|ref|YP_003816894.1| - 1.8e-07 31.1 0.0 5.1e-07 29.7 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Arch_flagellin PF01917.11 gi|302349257|ref|YP_003816895.1| - 8.4e-14 51.6 6.6 1.2e-13 51.1 4.6 1.5 1 1 0 1 1 1 1 Archaebacterial flagellin Adeno_PX PF05829.7 gi|302349258|ref|YP_003816896.1| - 0.24 10.9 3.0 28 4.3 0.0 3.3 3 0 0 3 3 3 0 Adenovirus late L2 mu core protein (Protein X) HisKA PF00512.20 gi|302349259|ref|YP_003816897.1| - 0.025 14.5 6.5 0.4 10.7 0.8 2.7 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain HisKA_3 PF07730.8 gi|302349259|ref|YP_003816897.1| - 0.043 14.1 0.5 0.043 14.1 0.4 2.7 1 1 2 3 3 3 0 Histidine kinase Herpes_UL25 PF01499.11 gi|302349259|ref|YP_003816897.1| - 5.4 5.1 8.6 9 4.4 6.0 1.3 1 0 0 1 1 1 0 Herpesvirus UL25 family Arch_flagellin PF01917.11 gi|302349260|ref|YP_003816898.1| - 0.003 17.2 6.7 0.0063 16.1 4.7 1.6 1 1 0 1 1 1 1 Archaebacterial flagellin DUF2542 PF10808.3 gi|302349260|ref|YP_003816898.1| - 0.62 10.3 2.5 1.7 8.9 1.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2542) KaiC PF06745.8 gi|302349262|ref|YP_003816900.1| - 1.7e-17 63.3 0.0 2e-17 63.1 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|302349262|ref|YP_003816900.1| - 5.5e-09 35.7 0.0 8e-09 35.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|302349262|ref|YP_003816900.1| - 9.4e-05 22.1 0.0 0.0004 20.0 0.0 1.8 1 1 0 1 1 1 1 NACHT domain Thymidylate_kin PF02223.12 gi|302349262|ref|YP_003816900.1| - 0.0002 20.8 0.0 0.00031 20.1 0.0 1.3 1 0 0 1 1 1 1 Thymidylate kinase RecA PF00154.16 gi|302349262|ref|YP_003816900.1| - 0.0014 17.7 0.1 0.0021 17.1 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.6 gi|302349262|ref|YP_003816900.1| - 0.0028 16.5 0.0 0.0043 16.0 0.0 1.3 1 0 0 1 1 1 1 Rad51 PAXNEB PF05625.6 gi|302349262|ref|YP_003816900.1| - 0.0052 15.6 0.3 0.013 14.3 0.1 1.6 2 0 0 2 2 2 1 PAXNEB protein AAA_22 PF13401.1 gi|302349262|ref|YP_003816900.1| - 0.0058 16.7 0.0 0.013 15.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|302349262|ref|YP_003816900.1| - 0.007 15.7 0.0 0.024 14.0 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_23 PF13476.1 gi|302349262|ref|YP_003816900.1| - 0.013 15.7 0.1 0.022 15.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_26 PF13500.1 gi|302349262|ref|YP_003816900.1| - 0.022 14.3 0.0 0.053 13.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|302349262|ref|YP_003816900.1| - 0.022 14.1 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain CbiA PF01656.18 gi|302349262|ref|YP_003816900.1| - 0.023 14.0 0.1 0.054 12.8 0.1 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|302349262|ref|YP_003816900.1| - 0.03 15.1 0.1 0.041 14.6 0.1 1.4 1 1 0 1 1 1 0 AAA domain Coronavirus_5 PF05528.6 gi|302349262|ref|YP_003816900.1| - 0.042 13.6 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Coronavirus gene 5 protein Elong_Iki1 PF10483.4 gi|302349262|ref|YP_003816900.1| - 0.047 13.0 0.0 0.068 12.5 0.0 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 ABC_tran PF00005.22 gi|302349262|ref|YP_003816900.1| - 0.061 13.6 0.0 0.097 12.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter AAA_16 PF13191.1 gi|302349262|ref|YP_003816900.1| - 0.065 13.2 0.1 0.12 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|302349262|ref|YP_003816900.1| - 0.088 13.1 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|302349263|ref|YP_003816901.1| - 4.2e-48 163.5 0.0 6.6e-48 162.9 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|302349263|ref|YP_003816901.1| - 1.1e-05 24.8 0.0 2.1e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|302349263|ref|YP_003816901.1| - 0.0077 16.3 0.0 0.027 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain Glyco_trans_4_4 PF13579.1 gi|302349263|ref|YP_003816901.1| - 0.02 15.0 0.1 0.044 13.9 0.1 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain ABC_tran PF00005.22 gi|302349263|ref|YP_003816901.1| - 0.031 14.5 0.0 0.068 13.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter FtsK_SpoIIIE PF01580.13 gi|302349263|ref|YP_003816901.1| - 0.054 12.9 0.1 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|302349263|ref|YP_003816901.1| - 0.12 12.7 0.4 0.22 11.8 0.3 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|302349263|ref|YP_003816901.1| - 0.12 13.1 0.0 0.57 11.0 0.0 2.2 1 1 0 1 1 1 0 AAA domain T2SF PF00482.18 gi|302349264|ref|YP_003816902.1| - 1.8e-14 53.6 16.1 7.3e-08 32.3 2.8 3.8 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Neurensin PF14927.1 gi|302349264|ref|YP_003816902.1| - 0.042 13.2 4.5 0.63 9.4 0.2 3.5 3 0 0 3 3 3 0 Neurensin DUF2079 PF09852.4 gi|302349265|ref|YP_003816903.1| - 1.8e-30 106.0 28.1 2.4e-30 105.6 19.4 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2079) AP_endonuc_2 PF01261.19 gi|302349266|ref|YP_003816904.1| - 3.4e-24 85.3 0.7 4.2e-24 85.0 0.5 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|302349266|ref|YP_003816904.1| - 6.9e-06 25.2 0.1 1.1e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 UV-endonuclease UvdE THUMP PF02926.12 gi|302349266|ref|YP_003816904.1| - 0.046 13.5 0.1 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 THUMP domain TF_Zn_Ribbon PF08271.7 gi|302349267|ref|YP_003816905.1| - 0.00037 19.7 0.9 0.71 9.2 0.1 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|302349267|ref|YP_003816905.1| - 0.0007 19.3 0.9 0.0015 18.3 0.6 1.5 1 1 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|302349267|ref|YP_003816905.1| - 0.0052 16.7 3.1 1.9 8.5 0.5 2.3 2 0 0 2 2 2 2 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|302349267|ref|YP_003816905.1| - 0.016 14.4 3.0 0.87 8.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|302349267|ref|YP_003816905.1| - 0.045 13.2 0.8 4.8 6.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|302349267|ref|YP_003816905.1| - 0.053 13.4 1.5 8.8 6.3 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CpXC PF14353.1 gi|302349267|ref|YP_003816905.1| - 0.065 13.1 0.5 0.63 10.0 0.3 2.0 1 1 0 1 1 1 0 CpXC protein Rubredoxin PF00301.15 gi|302349267|ref|YP_003816905.1| - 0.12 12.2 2.3 6.7 6.6 1.5 2.3 1 1 2 3 3 3 0 Rubredoxin zinc_ribbon_4 PF13717.1 gi|302349267|ref|YP_003816905.1| - 0.21 11.2 1.2 9.4 6.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|302349267|ref|YP_003816905.1| - 0.24 11.0 1.3 10 5.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|302349267|ref|YP_003816905.1| - 0.28 10.7 4.7 4.5 6.8 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.1 gi|302349267|ref|YP_003816905.1| - 0.77 9.4 4.2 7.8 6.2 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|302349267|ref|YP_003816905.1| - 1.2 9.2 4.0 23 5.1 2.5 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0547 PF10571.4 gi|302349267|ref|YP_003816905.1| - 1.2 8.8 5.1 15 5.4 0.7 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|302349267|ref|YP_003816905.1| - 3.2 7.9 6.1 8.8 6.5 0.4 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Arch_flagellin PF01917.11 gi|302349268|ref|YP_003816906.1| - 3.5e-14 52.8 6.0 5.6e-14 52.2 4.1 1.5 1 1 0 1 1 1 1 Archaebacterial flagellin DUF711 PF05167.7 gi|302349270|ref|YP_003816908.1| - 5.2e-60 203.2 0.0 1.1e-59 202.1 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) SRP54 PF00448.17 gi|302349271|ref|YP_003816909.1| - 3e-65 219.3 0.0 4.6e-65 218.7 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|302349271|ref|YP_003816909.1| - 1.4e-26 92.7 0.0 3.6e-26 91.4 0.0 1.7 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|302349271|ref|YP_003816909.1| - 2.7e-14 53.0 1.3 8.8e-14 51.3 0.0 2.6 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|302349271|ref|YP_003816909.1| - 1.3e-06 27.9 0.2 2e-05 24.0 0.1 2.7 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|302349271|ref|YP_003816909.1| - 1.7e-06 27.7 0.2 1.1e-05 25.1 0.0 2.5 3 1 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|302349271|ref|YP_003816909.1| - 5.1e-06 26.6 0.0 2e-05 24.7 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|302349271|ref|YP_003816909.1| - 5.7e-06 26.2 0.3 1.6e-05 24.8 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|302349271|ref|YP_003816909.1| - 1.3e-05 26.0 0.1 5e-05 24.1 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_30 PF13604.1 gi|302349271|ref|YP_003816909.1| - 2.6e-05 23.8 0.7 0.00066 19.3 0.1 2.6 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|302349271|ref|YP_003816909.1| - 0.00014 21.4 0.0 0.00074 19.0 0.0 2.3 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|302349271|ref|YP_003816909.1| - 0.00035 20.6 0.2 0.0019 18.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain cobW PF02492.14 gi|302349271|ref|YP_003816909.1| - 0.0018 17.7 0.0 0.0084 15.5 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|302349271|ref|YP_003816909.1| - 0.0018 17.4 0.0 0.005 15.9 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.1 gi|302349271|ref|YP_003816909.1| - 0.0045 16.4 1.4 0.22 10.9 0.3 3.4 3 1 0 3 3 3 1 AAA domain APS_kinase PF01583.15 gi|302349271|ref|YP_003816909.1| - 0.0058 16.2 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA PF00004.24 gi|302349271|ref|YP_003816909.1| - 0.0074 16.4 0.0 0.023 14.9 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_31 PF13614.1 gi|302349271|ref|YP_003816909.1| - 0.008 16.1 0.0 0.1 12.5 0.0 2.4 1 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|302349271|ref|YP_003816909.1| - 0.0081 16.4 0.1 0.027 14.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain LpxK PF02606.9 gi|302349271|ref|YP_003816909.1| - 0.0098 14.8 0.8 0.17 10.7 0.0 2.2 2 0 0 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase ArgK PF03308.11 gi|302349271|ref|YP_003816909.1| - 0.019 13.7 0.5 0.073 11.8 0.3 2.0 1 1 0 1 1 1 0 ArgK protein AAA_5 PF07728.9 gi|302349271|ref|YP_003816909.1| - 0.022 14.5 0.0 0.065 12.9 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) 6PF2K PF01591.13 gi|302349271|ref|YP_003816909.1| - 0.022 13.8 0.0 0.042 12.9 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase KTI12 PF08433.5 gi|302349271|ref|YP_003816909.1| - 0.026 13.7 0.0 0.058 12.6 0.0 1.6 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|302349271|ref|YP_003816909.1| - 0.031 14.0 0.1 0.15 11.8 0.1 2.3 1 0 0 1 1 1 0 Part of AAA domain AAA_28 PF13521.1 gi|302349271|ref|YP_003816909.1| - 0.032 14.2 0.5 0.11 12.4 0.3 2.0 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|302349271|ref|YP_003816909.1| - 0.032 13.7 0.1 0.067 12.7 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein VirC1 PF07015.6 gi|302349271|ref|YP_003816909.1| - 0.041 12.9 0.0 0.18 10.8 0.0 1.9 2 0 0 2 2 2 0 VirC1 protein Thymidylate_kin PF02223.12 gi|302349271|ref|YP_003816909.1| - 0.044 13.1 0.0 0.12 11.6 0.0 1.8 1 0 0 1 1 1 0 Thymidylate kinase NTPase_1 PF03266.10 gi|302349271|ref|YP_003816909.1| - 0.089 12.4 0.7 0.7 9.5 0.1 2.5 2 1 0 3 3 2 0 NTPase TrwB_AAD_bind PF10412.4 gi|302349271|ref|YP_003816909.1| - 0.15 10.6 0.1 0.94 8.0 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Abhydrolase_5 PF12695.2 gi|302349271|ref|YP_003816909.1| - 0.19 11.4 0.4 6 6.6 0.3 2.4 1 1 0 1 1 1 0 Alpha/beta hydrolase family Alba PF01918.16 gi|302349272|ref|YP_003816910.1| - 8.4e-10 38.1 0.6 1.2e-09 37.6 0.4 1.2 1 0 0 1 1 1 1 Alba DUF3325 PF11804.3 gi|302349273|ref|YP_003816911.1| - 2.1 8.2 10.2 1.1 9.2 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) ABC2_membrane_2 PF12679.2 gi|302349274|ref|YP_003816912.1| - 0.0031 16.4 18.0 0.0047 15.8 12.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF423 PF04241.10 gi|302349274|ref|YP_003816912.1| - 0.61 10.0 6.6 0.21 11.5 2.3 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF423) CCSMST1 PF15013.1 gi|302349274|ref|YP_003816912.1| - 5.2 7.0 5.3 15 5.5 0.4 3.4 3 1 1 4 4 4 0 CCSMST1 family ABC_tran PF00005.22 gi|302349275|ref|YP_003816913.1| - 3.3e-24 85.7 0.0 5.9e-24 84.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|302349275|ref|YP_003816913.1| - 2e-11 44.4 0.0 4.4e-07 30.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|302349275|ref|YP_003816913.1| - 4e-05 23.7 0.0 0.00012 22.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|302349275|ref|YP_003816913.1| - 0.00069 19.6 0.5 0.0015 18.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|302349275|ref|YP_003816913.1| - 0.0019 17.6 0.2 0.02 14.3 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|302349275|ref|YP_003816913.1| - 0.009 15.8 0.0 0.052 13.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|302349275|ref|YP_003816913.1| - 0.015 14.5 0.1 1.5 7.9 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|302349275|ref|YP_003816913.1| - 0.019 14.0 0.0 0.83 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|302349275|ref|YP_003816913.1| - 0.024 14.1 0.1 0.045 13.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain HTH_psq PF05225.11 gi|302349275|ref|YP_003816913.1| - 0.027 13.9 0.2 0.1 12.1 0.0 2.1 2 0 0 2 2 2 0 helix-turn-helix, Psq domain Mg_chelatase PF01078.16 gi|302349275|ref|YP_003816913.1| - 0.033 13.3 0.0 0.23 10.5 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|302349275|ref|YP_003816913.1| - 0.044 14.1 0.1 0.067 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|302349275|ref|YP_003816913.1| - 0.051 12.3 0.0 0.08 11.7 0.0 1.3 1 0 0 1 1 1 0 ArgK protein SbcCD_C PF13558.1 gi|302349275|ref|YP_003816913.1| - 0.085 12.7 0.3 0.32 10.9 0.0 2.1 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|302349275|ref|YP_003816913.1| - 0.097 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|302349275|ref|YP_003816913.1| - 0.14 11.5 0.1 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain adh_short PF00106.20 gi|302349276|ref|YP_003816914.1| - 3.1e-13 49.9 0.0 7.1e-13 48.8 0.0 1.6 1 1 1 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|302349276|ref|YP_003816914.1| - 2.4e-11 43.8 0.0 3.2e-11 43.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|302349276|ref|YP_003816914.1| - 2e-05 24.3 0.0 3.5e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|302349276|ref|YP_003816914.1| - 0.064 13.0 0.2 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TP_methylase PF00590.15 gi|302349276|ref|YP_003816914.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1152 PF06626.7 gi|302349277|ref|YP_003816915.1| - 1.1e-101 339.9 1.1 1.3e-101 339.6 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) OEP PF02321.13 gi|302349278|ref|YP_003816916.1| - 0.035 13.7 1.9 0.035 13.7 1.3 1.1 1 0 0 1 1 1 0 Outer membrane efflux protein PMC2NT PF08066.7 gi|302349278|ref|YP_003816916.1| - 0.055 13.7 0.5 0.66 10.3 0.0 2.0 2 0 0 2 2 2 0 PMC2NT (NUC016) domain Matrilin_ccoil PF10393.4 gi|302349278|ref|YP_003816916.1| - 0.057 12.8 1.1 0.6 9.5 0.1 2.4 1 1 1 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin RHH_3 PF12651.2 gi|302349278|ref|YP_003816916.1| - 0.086 12.5 0.1 0.086 12.5 0.1 2.4 3 1 1 4 4 4 0 Ribbon-helix-helix domain FliD_C PF07195.7 gi|302349278|ref|YP_003816916.1| - 0.088 12.0 0.2 0.1 11.9 0.1 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus BAG PF02179.11 gi|302349278|ref|YP_003816916.1| - 0.11 12.6 1.7 0.24 11.5 0.8 1.7 1 1 1 2 2 2 0 BAG domain DUF4525 PF15027.1 gi|302349278|ref|YP_003816916.1| - 0.44 10.0 2.1 8.2 5.9 1.5 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4525) RHH_1 PF01402.16 gi|302349279|ref|YP_003816917.1| - 1.7e-11 43.5 0.8 2e-11 43.2 0.5 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|302349279|ref|YP_003816917.1| - 9.2e-07 28.5 0.8 1.1e-06 28.2 0.6 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain DUF2191 PF09957.4 gi|302349279|ref|YP_003816917.1| - 0.029 14.1 1.1 0.089 12.6 0.8 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) RHH_4 PF13467.1 gi|302349279|ref|YP_003816917.1| - 0.055 13.3 0.0 0.06 13.2 0.0 1.1 1 0 0 1 1 1 0 Ribbon-helix-helix domain Sda PF08970.5 gi|302349279|ref|YP_003816917.1| - 0.43 10.0 2.9 3 7.3 2.0 2.0 1 1 0 1 1 1 0 Sporulation inhibitor A PPDK_N PF01326.14 gi|302349281|ref|YP_003816919.1| - 1.2e-22 80.3 0.0 6e-17 61.6 0.0 2.1 1 1 0 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain tRNA-synt_His PF13393.1 gi|302349282|ref|YP_003816920.1| - 9.2e-45 153.0 0.0 1.3e-44 152.5 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|302349282|ref|YP_003816920.1| - 2.6e-18 66.2 0.0 3.9e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|302349282|ref|YP_003816920.1| - 3.6e-12 46.0 0.0 6.9e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|302349282|ref|YP_003816920.1| - 0.00065 18.5 0.0 0.059 12.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|302349282|ref|YP_003816920.1| - 0.018 14.2 0.0 0.043 13.0 0.0 1.5 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) CBS PF00571.23 gi|302349283|ref|YP_003816921.1| - 2e-38 129.8 3.1 1.2e-12 47.3 0.1 4.1 4 0 0 4 4 4 4 CBS domain NTP_transf_3 PF12804.2 gi|302349283|ref|YP_003816921.1| - 0.034 14.2 0.2 0.053 13.6 0.2 1.4 1 0 0 1 1 1 0 MobA-like NTP transferase domain ADH_N PF08240.7 gi|302349284|ref|YP_003816922.1| - 2.8e-29 101.0 2.7 3.3e-29 100.8 0.8 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|302349284|ref|YP_003816922.1| - 1.4e-23 82.9 0.2 3.5e-23 81.5 0.1 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|302349284|ref|YP_003816922.1| - 4.3e-12 47.0 0.2 1.3e-11 45.4 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|302349284|ref|YP_003816922.1| - 0.00047 20.2 0.2 0.00069 19.6 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|302349284|ref|YP_003816922.1| - 0.017 15.0 0.4 3.7 7.4 0.0 2.5 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus AlaDh_PNT_C PF01262.16 gi|302349284|ref|YP_003816922.1| - 0.031 13.8 0.3 0.053 13.0 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.19 gi|302349284|ref|YP_003816922.1| - 0.061 13.6 0.5 1.2 9.4 0.2 2.4 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DUF4346 PF14251.1 gi|302349285|ref|YP_003816923.1| - 4.9e-05 23.0 0.0 9.4e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) PcrB PF01884.12 gi|302349285|ref|YP_003816923.1| - 0.06 12.5 0.0 3.7 6.7 0.0 2.3 1 1 0 2 2 2 0 PcrB family Cytochrom_B_N_2 PF13631.1 gi|302349286|ref|YP_003816924.1| - 2.7e-13 50.0 25.2 5.8e-13 48.9 6.0 3.9 2 1 1 3 3 3 2 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|302349286|ref|YP_003816924.1| - 8.7 5.6 35.8 0.059 12.7 8.1 3.3 2 1 1 3 3 3 0 Cytochrome b(N-terminal)/b6/petB VKOR PF07884.9 gi|302349287|ref|YP_003816925.1| - 2.1e-20 72.9 11.1 2.4e-20 72.8 7.7 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family Tombus_P19 PF03220.8 gi|302349287|ref|YP_003816925.1| - 0.16 11.2 0.3 2.9 7.2 0.0 2.0 1 1 1 2 2 2 0 Tombusvirus P19 core protein tRNA_edit PF04073.10 gi|302349288|ref|YP_003816926.1| - 2.8e-31 107.9 0.0 3.3e-31 107.6 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain ThiS PF02597.15 gi|302349290|ref|YP_003816928.1| - 0.00011 22.5 0.1 0.00015 22.0 0.1 1.2 1 0 0 1 1 1 1 ThiS family Creatininase PF02633.9 gi|302349291|ref|YP_003816929.1| - 3.4e-42 144.1 0.0 3.9e-42 143.9 0.0 1.2 1 0 0 1 1 1 1 Creatinine amidohydrolase His_Phos_1 PF00300.17 gi|302349292|ref|YP_003816930.1| - 2.6e-48 164.0 0.0 3.1e-48 163.8 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) DUF973 PF06157.6 gi|302349294|ref|YP_003816932.1| - 1.9e-10 40.2 2.8 1.2e-08 34.2 1.1 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF973) AA_permease_2 PF13520.1 gi|302349295|ref|YP_003816933.1| - 2.8e-41 141.4 60.6 2.8e-41 141.4 42.0 2.9 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|302349295|ref|YP_003816933.1| - 3.8e-30 104.6 63.0 3.8e-30 104.6 43.7 2.3 1 1 1 2 2 2 1 Amino acid permease Y_Y_Y PF07495.8 gi|302349297|ref|YP_003816935.1| - 0.0059 16.3 0.9 0.19 11.4 0.1 3.3 3 0 0 3 3 3 1 Y_Y_Y domain Rifin_STEVOR PF02009.11 gi|302349297|ref|YP_003816935.1| - 3 7.4 6.9 4.4 6.8 4.8 1.2 1 0 0 1 1 1 0 Rifin/stevor family Tubulin_2 PF13809.1 gi|302349298|ref|YP_003816936.1| - 3.9e-18 65.4 0.0 1.1e-17 64.0 0.0 1.7 1 1 0 1 1 1 1 Tubulin like Tubulin PF00091.20 gi|302349298|ref|YP_003816936.1| - 4.6e-08 33.1 0.0 2.6e-07 30.6 0.0 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Baculo_PEP_C PF04513.7 gi|302349298|ref|YP_003816936.1| - 0.0075 16.0 3.2 11 5.8 0.1 4.0 4 1 0 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|302349298|ref|YP_003816936.1| - 0.037 13.2 1.9 1.3 8.1 0.0 2.9 3 0 0 3 3 3 0 Reovirus sigma C capsid protein COG2 PF06148.6 gi|302349298|ref|YP_003816936.1| - 0.073 12.9 4.9 12 5.8 0.1 3.9 4 0 0 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Mod_r PF07200.8 gi|302349298|ref|YP_003816936.1| - 0.8 9.6 3.0 0.71 9.7 0.4 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein IncA PF04156.9 gi|302349298|ref|YP_003816936.1| - 1.8 8.0 6.7 0.88 9.1 0.1 3.0 3 1 0 3 3 3 0 IncA protein IFT57 PF10498.4 gi|302349298|ref|YP_003816936.1| - 1.9 7.1 3.2 21 3.7 0.0 2.9 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 DUF87 PF01935.12 gi|302349300|ref|YP_003816938.1| - 2.3e-29 102.8 0.0 3.1e-29 102.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|302349300|ref|YP_003816938.1| - 4.3e-22 78.9 0.0 5.7e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|302349300|ref|YP_003816938.1| - 0.0015 17.0 0.1 0.28 9.4 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|302349300|ref|YP_003816938.1| - 0.0037 16.7 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|302349300|ref|YP_003816938.1| - 0.017 13.7 0.0 0.16 10.5 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.5 gi|302349301|ref|YP_003816939.1| - 4.7e-12 45.9 0.0 8.1e-12 45.1 0.0 1.4 1 1 0 1 1 1 1 NurA domain