# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- CRISPR_Cas6 PF10040.9 gi|302347804|ref|YP_003815442.1| - 2.8e-12 47.1 0.1 5e-12 46.3 0.1 1.4 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Cas6_N PF17952.1 gi|302347804|ref|YP_003815442.1| - 2.5e-07 31.0 0.0 1.2e-06 28.8 0.0 2.1 2 1 0 2 2 2 1 Cas6 N-terminal domain MarR_2 PF12802.7 gi|302347805|ref|YP_003815443.1| - 0.018 14.9 0.7 0.063 13.2 0.7 1.9 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 gi|302347805|ref|YP_003815443.1| - 0.027 14.5 0.4 0.074 13.1 0.4 1.8 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|302347805|ref|YP_003815443.1| - 0.068 13.1 0.2 0.13 12.3 0.2 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|302347805|ref|YP_003815443.1| - 0.073 13.1 0.6 0.073 13.1 0.6 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|302347805|ref|YP_003815443.1| - 0.088 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Cas_Cas4 PF01930.17 gi|302347806|ref|YP_003815444.1| - 3e-13 50.2 0.0 3.5e-13 50.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|302347806|ref|YP_003815444.1| - 1.1e-05 25.5 0.0 3.1e-05 24.0 0.0 1.7 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.9 gi|302347807|ref|YP_003815445.1| - 2e-12 47.1 0.0 2.2e-12 47.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|302347808|ref|YP_003815446.1| - 1e-56 192.2 0.0 1.2e-56 192.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 His_Phos_1 PF00300.22 gi|302347808|ref|YP_003815446.1| - 0.089 12.5 0.1 3.5 7.3 0.1 2.7 3 0 0 3 3 3 0 Histidine phosphatase superfamily (branch 1) Csa1 PF06023.12 gi|302347809|ref|YP_003815447.1| - 1.2e-43 149.6 0.0 1.5e-43 149.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 Cas_Cas4 PF01930.17 gi|302347809|ref|YP_003815447.1| - 0.0074 16.4 0.0 1.3 9.1 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 Cas_Cmr3 PF09700.10 gi|302347810|ref|YP_003815448.1| - 7.2e-06 25.7 0.0 5.6e-05 22.7 0.0 2.1 1 1 0 2 2 2 1 CRISPR-associated protein (Cas_Cmr3) DUF3692 PF12469.8 gi|302347811|ref|YP_003815449.1| - 2.7e-31 108.1 0.0 2e-30 105.2 0.0 2.3 2 0 0 2 2 2 1 CRISPR-associated protein SpoVIF PF14069.6 gi|302347811|ref|YP_003815449.1| - 0.14 11.9 0.0 4.6 7.1 0.0 2.8 2 0 0 2 2 2 0 Stage VI sporulation protein F GGDEF_2 PF17853.1 gi|302347811|ref|YP_003815449.1| - 0.15 12.4 0.0 0.7 10.2 0.0 2.3 2 0 0 2 2 2 0 GGDEF-like domain RAMPs PF03787.15 gi|302347812|ref|YP_003815450.1| - 3.4e-08 33.8 0.0 7.9e-08 32.6 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|302347813|ref|YP_003815451.1| - 0.00034 20.7 0.7 0.21 11.6 1.6 2.7 2 1 0 2 2 2 1 RAMP superfamily RAMPs PF03787.15 gi|302347815|ref|YP_003815453.1| - 1.3e-29 103.8 0.0 1.5e-29 103.6 0.0 1.1 1 0 0 1 1 1 1 RAMP superfamily Cas_APE2256 PF09651.10 gi|302347818|ref|YP_003815456.1| - 2.3e-22 79.3 0.1 3.2e-22 78.9 0.1 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Rop PF01815.16 gi|302347818|ref|YP_003815456.1| - 0.16 11.8 0.2 0.87 9.5 0.1 2.1 2 0 0 2 2 2 0 Rop protein Sugar_tr PF00083.24 gi|302347821|ref|YP_003815459.1| - 6e-12 45.2 8.5 6e-12 45.2 8.5 2.2 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|302347821|ref|YP_003815459.1| - 9e-12 44.6 60.7 2.5e-09 36.5 24.3 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily ABC_tran PF00005.27 gi|302347822|ref|YP_003815460.1| - 4.3e-29 101.8 0.0 5.7e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302347822|ref|YP_003815460.1| - 3.6e-08 33.6 0.6 0.0059 16.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|302347822|ref|YP_003815460.1| - 0.0045 16.7 0.0 0.0084 15.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|302347822|ref|YP_003815460.1| - 0.048 14.1 0.0 0.075 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|302347822|ref|YP_003815460.1| - 0.049 13.3 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|302347822|ref|YP_003815460.1| - 0.14 12.6 0.0 7.6 7.0 0.0 2.8 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.7 gi|302347822|ref|YP_003815460.1| - 0.16 10.9 0.0 6.1 5.7 0.0 2.1 1 1 2 3 3 3 0 AAA-like domain AAA_22 PF13401.6 gi|302347822|ref|YP_003815460.1| - 0.17 12.1 0.1 0.48 10.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|302347822|ref|YP_003815460.1| - 0.17 11.9 0.0 0.33 11.0 0.0 1.4 1 1 0 1 1 1 0 Helicase HerA, central domain AAA_27 PF13514.6 gi|302347822|ref|YP_003815460.1| - 0.18 11.4 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|302347822|ref|YP_003815460.1| - 0.18 11.3 1.0 1.3 8.6 0.3 2.5 2 1 0 2 2 2 0 AAA domain DEAD_assoc PF08494.11 gi|302347824|ref|YP_003815462.1| - 1.3e-54 184.9 0.0 2.5e-54 184.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|302347824|ref|YP_003815462.1| - 5.4e-31 107.7 0.0 7.3e-30 104.0 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|302347824|ref|YP_003815462.1| - 8.9e-16 58.2 0.1 8e-15 55.1 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|302347824|ref|YP_003815462.1| - 1.5e-07 31.6 0.0 5.9e-07 29.7 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF4130 PF13566.6 gi|302347824|ref|YP_003815462.1| - 0.018 15.0 0.0 0.057 13.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4130 SNF2_N PF00176.23 gi|302347824|ref|YP_003815462.1| - 0.039 12.7 0.0 0.12 11.0 0.0 1.8 3 0 0 3 3 3 0 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|302347824|ref|YP_003815462.1| - 0.11 12.8 0.1 1 9.6 0.0 2.7 2 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|302347824|ref|YP_003815462.1| - 0.16 11.4 0.0 0.33 10.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_11 PF13086.6 gi|302347824|ref|YP_003815462.1| - 0.19 11.5 0.0 0.38 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|302347824|ref|YP_003815462.1| - 0.21 11.9 0.3 5.4 7.3 0.1 2.9 2 1 0 2 2 2 0 AAA domain DUF2208 PF09973.9 gi|302347825|ref|YP_003815463.1| - 2.7e-76 256.2 11.0 3.1e-76 256.0 11.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Phage_holin_3_6 PF07332.11 gi|302347825|ref|YP_003815463.1| - 2 8.5 5.6 10 6.2 0.1 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III SCP2 PF02036.17 gi|302347826|ref|YP_003815464.1| - 6.3e-16 58.7 0.0 7.3e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.6 gi|302347826|ref|YP_003815464.1| - 5.4e-05 23.5 0.0 7.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal Thiolase_N PF00108.23 gi|302347827|ref|YP_003815465.1| - 9e-32 110.4 0.1 7.2e-27 94.4 0.0 2.9 3 0 0 3 3 3 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|302347827|ref|YP_003815465.1| - 7.5e-09 35.5 9.5 9.8e-07 28.6 3.4 3.4 2 2 2 4 4 4 2 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|302347827|ref|YP_003815465.1| - 1.1e-08 34.8 2.7 1.3e-06 28.1 0.3 3.1 3 2 1 4 4 4 2 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|302347827|ref|YP_003815465.1| - 0.0001 22.1 2.5 0.0094 15.8 0.2 3.1 4 0 0 4 4 4 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|302347827|ref|YP_003815465.1| - 0.013 15.5 1.0 0.36 10.8 0.0 2.9 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain FAE1_CUT1_RppA PF08392.12 gi|302347827|ref|YP_003815465.1| - 0.11 11.8 0.0 0.23 10.7 0.0 1.5 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein OB_aCoA_assoc PF01796.17 gi|302347828|ref|YP_003815466.1| - 1.5e-16 60.2 0.6 2.2e-16 59.6 0.6 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|302347828|ref|YP_003815466.1| - 2e-09 37.1 0.1 4.4e-09 36.0 0.0 1.6 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thioredoxin_11 PF18078.1 gi|302347828|ref|YP_003815466.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like SNTX domain PNP_UDP_1 PF01048.20 gi|302347829|ref|YP_003815467.1| - 1e-20 74.0 0.5 2.4e-20 72.8 0.1 1.7 2 1 0 2 2 2 1 Phosphorylase superfamily DeoC PF01791.9 gi|302347830|ref|YP_003815468.1| - 2.2e-38 132.2 0.0 2.7e-38 131.9 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Peptidase_C26 PF07722.13 gi|302347830|ref|YP_003815468.1| - 0.034 13.9 0.0 0.44 10.3 0.0 2.2 2 0 0 2 2 2 0 Peptidase C26 DNA_pol3_gamma3 PF12169.8 gi|302347830|ref|YP_003815468.1| - 0.052 13.5 0.3 0.5 10.3 0.0 2.4 1 1 0 2 2 2 0 DNA polymerase III subunits gamma and tau domain III HTH_psq PF05225.16 gi|302347830|ref|YP_003815468.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain DcuC PF03606.15 gi|302347830|ref|YP_003815468.1| - 0.13 10.7 0.2 0.19 10.1 0.2 1.2 1 0 0 1 1 1 0 C4-dicarboxylate anaerobic carrier ThiG PF05690.14 gi|302347830|ref|YP_003815468.1| - 0.23 10.7 3.7 0.16 11.3 0.7 2.1 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG PfkB PF00294.24 gi|302347831|ref|YP_003815469.1| - 3.8e-49 167.6 0.0 4.6e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|302347831|ref|YP_003815469.1| - 1.5e-05 24.5 0.0 2.5e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase UvsW PF11637.8 gi|302347831|ref|YP_003815469.1| - 0.058 13.5 0.1 0.19 11.9 0.0 1.9 2 0 0 2 2 2 0 ATP-dependant DNA helicase UvsW Flavoprotein PF02441.19 gi|302347832|ref|YP_003815470.1| - 1.5e-19 70.3 0.0 1.9e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein tRNA_int_endo PF01974.17 gi|302347835|ref|YP_003815473.1| - 1.3e-24 86.0 0.1 1.9e-24 85.5 0.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|302347835|ref|YP_003815473.1| - 4.8e-19 67.8 0.8 8.6e-19 67.0 0.0 1.8 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|302347835|ref|YP_003815473.1| - 0.00013 22.0 0.1 0.00028 21.0 0.0 1.7 2 0 0 2 2 2 1 tRNA-splicing endonuclease subunit sen54 N-term RPAP2_Rtr1 PF04181.13 gi|302347836|ref|YP_003815474.1| - 1.3 9.4 5.2 0.19 12.1 1.1 1.7 2 0 0 2 2 2 0 Rtr1/RPAP2 family Cation_efflux PF01545.21 gi|302347837|ref|YP_003815475.1| - 3.1e-13 49.9 16.5 4e-13 49.5 16.5 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|302347837|ref|YP_003815475.1| - 0.0092 16.1 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF485 PF04341.12 gi|302347837|ref|YP_003815475.1| - 6.3 6.8 9.2 0.44 10.5 2.5 2.5 1 1 2 3 3 3 0 Protein of unknown function, DUF485 P5CR_dimer PF14748.6 gi|302347838|ref|YP_003815476.1| - 8.7e-31 106.2 1.0 2e-30 105.1 1.0 1.7 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|302347838|ref|YP_003815476.1| - 4.6e-19 68.8 0.7 2.1e-18 66.7 1.0 2.0 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|302347838|ref|YP_003815476.1| - 4.2e-07 29.7 2.6 1.6e-06 27.8 2.6 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|302347838|ref|YP_003815476.1| - 5.2e-07 30.0 1.4 1e-06 29.0 0.5 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.17 gi|302347838|ref|YP_003815476.1| - 1.5e-05 24.2 0.0 2.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase IlvN PF07991.12 gi|302347838|ref|YP_003815476.1| - 0.00043 19.9 0.1 0.00065 19.3 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|302347838|ref|YP_003815476.1| - 0.0012 18.3 0.2 0.0023 17.3 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|302347838|ref|YP_003815476.1| - 0.0027 18.3 0.7 0.016 15.9 0.3 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding_2 PF13380.6 gi|302347838|ref|YP_003815476.1| - 0.0027 18.2 1.2 0.013 16.0 0.7 2.1 2 0 0 2 2 2 1 CoA binding domain NAD_binding_3 PF03447.16 gi|302347838|ref|YP_003815476.1| - 0.003 18.2 0.3 0.0059 17.2 0.3 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|302347838|ref|YP_003815476.1| - 0.0066 16.7 1.3 0.018 15.3 0.9 2.1 2 1 0 2 2 1 1 TrkA-N domain Rossmann-like PF10727.9 gi|302347838|ref|YP_003815476.1| - 0.0083 16.0 3.4 0.015 15.1 3.4 1.4 1 0 0 1 1 1 1 Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|302347838|ref|YP_003815476.1| - 0.0091 16.3 0.3 0.015 15.5 0.3 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|302347838|ref|YP_003815476.1| - 0.023 15.1 0.6 0.04 14.4 0.6 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|302347838|ref|YP_003815476.1| - 0.031 14.2 3.9 0.058 13.3 2.9 1.9 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|302347838|ref|YP_003815476.1| - 0.036 14.0 4.9 0.19 11.7 0.2 2.4 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|302347838|ref|YP_003815476.1| - 0.037 14.1 0.3 0.064 13.3 0.3 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DapB_N PF01113.20 gi|302347838|ref|YP_003815476.1| - 0.049 13.8 0.7 0.083 13.0 0.7 1.5 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NmrA PF05368.13 gi|302347838|ref|YP_003815476.1| - 0.11 12.0 0.9 0.17 11.5 0.9 1.3 1 0 0 1 1 1 0 NmrA-like family DUF5560 PF17715.1 gi|302347838|ref|YP_003815476.1| - 0.14 11.6 0.0 0.36 10.3 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5560) ThiF PF00899.21 gi|302347838|ref|YP_003815476.1| - 1.4 8.2 8.2 7.6 5.8 0.0 2.1 1 1 1 2 2 2 0 ThiF family Acetyltransf_1 PF00583.25 gi|302347839|ref|YP_003815477.1| - 3.1e-08 33.9 0.0 5.7e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|302347839|ref|YP_003815477.1| - 8.8e-07 28.9 0.0 1.4e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|302347839|ref|YP_003815477.1| - 0.0052 16.9 0.1 0.12 12.5 0.0 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|302347839|ref|YP_003815477.1| - 0.0064 16.9 0.0 0.017 15.5 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|302347839|ref|YP_003815477.1| - 0.0098 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ FR47 PF08445.10 gi|302347839|ref|YP_003815477.1| - 0.077 13.0 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein ATP_bind_1 PF03029.17 gi|302347840|ref|YP_003815478.1| - 1e-56 192.5 0.0 1.2e-56 192.3 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|302347840|ref|YP_003815478.1| - 3.9e-05 23.5 0.0 0.19 11.5 0.0 2.2 2 0 0 2 2 2 2 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_16 PF13191.6 gi|302347840|ref|YP_003815478.1| - 0.00015 22.2 0.0 0.00024 21.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|302347840|ref|YP_003815478.1| - 0.00054 20.0 0.1 0.0038 17.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|302347840|ref|YP_003815478.1| - 0.00054 19.6 2.0 0.01 15.4 2.0 2.1 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|302347840|ref|YP_003815478.1| - 0.00059 19.5 0.1 0.038 13.6 0.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MipZ PF09140.11 gi|302347840|ref|YP_003815478.1| - 0.00063 19.1 0.0 0.094 12.0 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ AAA_33 PF13671.6 gi|302347840|ref|YP_003815478.1| - 0.00065 19.9 0.0 0.00087 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|302347840|ref|YP_003815478.1| - 0.00072 20.1 0.0 0.0011 19.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|302347840|ref|YP_003815478.1| - 0.00078 19.5 0.0 0.0012 18.9 0.0 1.5 1 1 1 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain RsgA_GTPase PF03193.16 gi|302347840|ref|YP_003815478.1| - 0.0012 18.8 0.5 0.064 13.2 0.2 2.9 3 0 0 3 3 3 1 RsgA GTPase AAA_30 PF13604.6 gi|302347840|ref|YP_003815478.1| - 0.0016 18.2 0.1 0.0028 17.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.6 gi|302347840|ref|YP_003815478.1| - 0.0019 18.1 0.0 0.071 13.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|302347840|ref|YP_003815478.1| - 0.0045 17.0 0.0 0.0083 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.9 gi|302347840|ref|YP_003815478.1| - 0.005 16.6 0.2 1.7 8.4 0.1 3.4 3 1 0 4 4 4 1 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|302347840|ref|YP_003815478.1| - 0.0053 16.4 0.1 0.03 13.9 0.1 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ParA PF10609.9 gi|302347840|ref|YP_003815478.1| - 0.0061 16.0 0.5 0.019 14.4 0.1 1.9 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase RNA_helicase PF00910.22 gi|302347840|ref|YP_003815478.1| - 0.0068 16.8 0.0 0.018 15.4 0.0 1.7 2 0 0 2 2 1 1 RNA helicase Zeta_toxin PF06414.12 gi|302347840|ref|YP_003815478.1| - 0.0083 15.4 0.0 0.1 11.8 0.0 2.5 3 0 0 3 3 3 1 Zeta toxin MMR_HSR1 PF01926.23 gi|302347840|ref|YP_003815478.1| - 0.0089 16.1 0.1 0.091 12.8 0.1 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase NACHT PF05729.12 gi|302347840|ref|YP_003815478.1| - 0.011 15.7 0.1 0.03 14.2 0.1 1.7 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.27 gi|302347840|ref|YP_003815478.1| - 0.011 16.2 0.1 0.021 15.3 0.1 1.8 1 1 0 1 1 1 0 ABC transporter AAA_7 PF12775.7 gi|302347840|ref|YP_003815478.1| - 0.019 14.5 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Cytidylate_kin PF02224.18 gi|302347840|ref|YP_003815478.1| - 0.027 14.2 0.3 0.063 13.0 0.1 1.7 2 0 0 2 2 1 0 Cytidylate kinase AAA_28 PF13521.6 gi|302347840|ref|YP_003815478.1| - 0.027 14.7 0.0 0.06 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 gi|302347840|ref|YP_003815478.1| - 0.029 13.3 0.0 0.049 12.5 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain GTP_EFTU PF00009.27 gi|302347840|ref|YP_003815478.1| - 0.029 13.9 0.0 0.23 11.0 0.0 2.3 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_22 PF13401.6 gi|302347840|ref|YP_003815478.1| - 0.032 14.5 0.0 0.11 12.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain Fer4_NifH PF00142.18 gi|302347840|ref|YP_003815478.1| - 0.042 13.3 0.0 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family T2SSE PF00437.20 gi|302347840|ref|YP_003815478.1| - 0.052 12.6 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein KTI12 PF08433.10 gi|302347840|ref|YP_003815478.1| - 0.059 12.8 0.0 0.092 12.2 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|302347840|ref|YP_003815478.1| - 0.061 12.5 0.2 0.096 11.9 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain PhoH PF02562.16 gi|302347840|ref|YP_003815478.1| - 0.062 12.7 0.3 0.1 12.1 0.3 1.3 1 0 0 1 1 1 0 PhoH-like protein ATPase_2 PF01637.18 gi|302347840|ref|YP_003815478.1| - 0.098 12.5 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|302347840|ref|YP_003815478.1| - 0.11 12.2 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Glyco_trans_4_4 PF13579.6 gi|302347840|ref|YP_003815478.1| - 0.11 12.9 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Ploopntkinase3 PF18751.1 gi|302347840|ref|YP_003815478.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 APS_kinase PF01583.20 gi|302347840|ref|YP_003815478.1| - 0.12 12.2 0.0 0.35 10.7 0.0 1.7 2 0 0 2 2 1 0 Adenylylsulphate kinase AAA PF00004.29 gi|302347840|ref|YP_003815478.1| - 0.13 12.7 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ArsA_ATPase PF02374.15 gi|302347840|ref|YP_003815478.1| - 0.14 11.3 0.4 0.24 10.5 0.1 1.5 2 0 0 2 2 1 0 Anion-transporting ATPase MeaB PF03308.16 gi|302347840|ref|YP_003815478.1| - 0.14 11.1 0.0 0.44 9.5 0.0 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA12 PF10443.9 gi|302347840|ref|YP_003815478.1| - 0.14 10.8 0.0 0.24 10.1 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_24 PF13479.6 gi|302347840|ref|YP_003815478.1| - 0.17 11.6 0.0 0.32 10.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|302347840|ref|YP_003815478.1| - 0.17 11.6 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|302347840|ref|YP_003815478.1| - 0.17 11.2 0.4 0.33 10.3 0.2 1.5 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.18 gi|302347840|ref|YP_003815478.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase FTHFS PF01268.19 gi|302347840|ref|YP_003815478.1| - 0.18 10.0 0.0 0.27 9.4 0.0 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase 4HBT PF03061.22 gi|302347841|ref|YP_003815479.1| - 0.00028 21.2 0.1 0.00043 20.6 0.1 1.4 1 1 0 1 1 1 1 Thioesterase superfamily Aldo_ket_red PF00248.21 gi|302347842|ref|YP_003815480.1| - 1.2e-66 224.9 0.0 1.3e-66 224.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MerR_1 PF13411.6 gi|302347842|ref|YP_003815480.1| - 0.023 14.8 0.0 0.091 12.9 0.0 2.0 1 0 0 1 1 1 0 MerR HTH family regulatory protein Sugar_tr PF00083.24 gi|302347843|ref|YP_003815481.1| - 2.9e-18 66.0 20.0 3.8e-16 59.0 3.3 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|302347843|ref|YP_003815481.1| - 5.7e-11 41.9 38.6 5.7e-11 41.9 38.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Gp45_2 PF17470.2 gi|302347844|ref|YP_003815482.1| - 0.011 15.7 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Phage gene product 45.2 LUD_dom PF02589.15 gi|302347845|ref|YP_003815483.1| - 1.8e-47 161.5 0.3 3e-46 157.5 0.3 2.0 1 1 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|302347845|ref|YP_003815483.1| - 5.5e-12 46.0 2.2 9.9e-12 45.1 2.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|302347845|ref|YP_003815483.1| - 2.5e-08 34.3 1.3 4.7e-08 33.5 1.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|302347845|ref|YP_003815483.1| - 7.6e-07 29.2 9.4 7.7e-05 22.7 10.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|302347845|ref|YP_003815483.1| - 1.7e-06 27.8 11.8 0.00035 20.5 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|302347845|ref|YP_003815483.1| - 8e-06 25.5 15.7 0.003 17.3 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|302347845|ref|YP_003815483.1| - 8.6e-06 25.8 4.9 2.4e-05 24.4 4.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|302347845|ref|YP_003815483.1| - 1.2e-05 25.8 8.7 4.3e-05 24.0 8.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|302347845|ref|YP_003815483.1| - 0.0001 22.4 6.6 0.067 13.3 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|302347845|ref|YP_003815483.1| - 0.00093 20.1 7.0 0.13 13.2 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|302347845|ref|YP_003815483.1| - 0.0011 18.9 12.6 0.028 14.5 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|302347845|ref|YP_003815483.1| - 0.0014 19.4 10.4 0.03 15.2 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|302347845|ref|YP_003815483.1| - 0.0027 17.5 2.4 1.1 9.0 0.0 2.6 3 0 0 3 3 3 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Mitofilin PF09731.9 gi|302347845|ref|YP_003815483.1| - 0.012 14.5 0.0 2 7.1 0.0 2.0 1 1 1 2 2 2 0 Mitochondrial inner membrane protein Fer4_4 PF12800.7 gi|302347845|ref|YP_003815483.1| - 0.031 14.8 10.6 0.57 10.8 1.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|302347845|ref|YP_003815483.1| - 0.11 12.8 3.4 2.7 8.2 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|302347845|ref|YP_003815483.1| - 0.66 11.0 16.3 1.3 10.1 4.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.16 gi|302347846|ref|YP_003815484.1| - 1.1e-09 38.4 0.0 3.3e-08 33.6 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain MIP-T3_C PF17749.1 gi|302347847|ref|YP_003815485.1| - 0.0014 18.6 0.1 0.0023 17.9 0.1 1.4 1 0 0 1 1 1 1 Microtubule-binding protein MIP-T3 C-terminal region DUF4407 PF14362.6 gi|302347847|ref|YP_003815485.1| - 0.015 14.7 0.8 0.019 14.4 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2333 PF10095.9 gi|302347847|ref|YP_003815485.1| - 0.016 14.3 0.0 0.021 13.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2333) LPP PF04728.13 gi|302347847|ref|YP_003815485.1| - 0.02 15.3 0.7 0.049 14.0 0.7 1.6 1 0 0 1 1 1 0 Lipoprotein leucine-zipper KfrA_N PF11740.8 gi|302347847|ref|YP_003815485.1| - 0.024 15.3 8.0 0.25 12.0 5.8 2.3 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term DUF2937 PF11157.8 gi|302347847|ref|YP_003815485.1| - 0.054 13.2 0.0 0.19 11.5 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) DUF3510 PF12022.8 gi|302347847|ref|YP_003815485.1| - 0.056 13.8 0.2 0.13 12.6 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3510) RPW8 PF05659.11 gi|302347847|ref|YP_003815485.1| - 0.071 12.8 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Matrilin_ccoil PF10393.9 gi|302347847|ref|YP_003815485.1| - 0.13 12.2 0.2 1.1 9.2 0.1 2.5 1 1 1 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Prefoldin PF02996.17 gi|302347847|ref|YP_003815485.1| - 0.15 12.0 1.0 0.35 10.8 1.0 1.7 1 0 0 1 1 1 0 Prefoldin subunit BLOC1_2 PF10046.9 gi|302347847|ref|YP_003815485.1| - 0.17 12.2 0.7 0.49 10.7 0.2 2.0 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3772 PF12607.8 gi|302347847|ref|YP_003815485.1| - 8.6 6.2 9.5 8.5 6.2 3.1 2.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3772) VIT1 PF01988.19 gi|302347848|ref|YP_003815486.1| - 1.1e-05 25.5 26.9 0.00058 19.8 7.6 2.3 1 1 1 2 2 2 2 VIT family Rubrerythrin PF02915.17 gi|302347848|ref|YP_003815486.1| - 1.9e-05 25.1 1.4 6e-05 23.5 1.4 1.7 1 1 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|302347848|ref|YP_003815486.1| - 0.052 13.3 0.0 13 5.6 0.0 2.4 2 1 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 TcdA_TcdB_pore PF12920.7 gi|302347848|ref|YP_003815486.1| - 0.27 9.4 2.5 0.38 9.0 2.5 1.1 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain NUDIX PF00293.28 gi|302347849|ref|YP_003815487.1| - 4.6e-19 68.8 0.7 5.8e-19 68.4 0.7 1.1 1 0 0 1 1 1 1 NUDIX domain Peptidase_S9 PF00326.21 gi|302347850|ref|YP_003815488.1| - 5.3e-50 169.8 0.1 7.2e-50 169.4 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|302347850|ref|YP_003815488.1| - 2.6e-22 78.2 11.5 3.8e-08 33.1 0.1 5.7 5 0 0 5 5 5 4 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|302347850|ref|YP_003815488.1| - 7.6e-07 28.2 0.2 0.26 10.0 0.0 4.5 3 1 0 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S15 PF02129.18 gi|302347850|ref|YP_003815488.1| - 2.7e-06 27.2 0.4 0.012 15.3 1.8 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|302347850|ref|YP_003815488.1| - 2e-05 24.3 0.5 5e-05 23.1 0.5 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Gmad1 PF10647.9 gi|302347850|ref|YP_003815488.1| - 0.0003 20.6 0.2 1 9.0 0.0 3.3 2 1 0 3 3 3 2 Lipoprotein LpqB beta-propeller domain AXE1 PF05448.12 gi|302347850|ref|YP_003815488.1| - 0.00094 17.9 0.1 0.069 11.8 0.2 2.5 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|302347850|ref|YP_003815488.1| - 0.001 18.4 0.5 0.84 8.9 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|302347850|ref|YP_003815488.1| - 0.0013 18.3 0.0 0.0024 17.5 0.0 1.4 1 1 0 1 1 1 1 Dienelactone hydrolase family DUF2920 PF11144.8 gi|302347850|ref|YP_003815488.1| - 0.046 12.9 0.0 1.6 7.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) DUF5050 PF16472.5 gi|302347850|ref|YP_003815488.1| - 0.058 12.6 0.0 0.095 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5050) eIF2A PF08662.11 gi|302347850|ref|YP_003815488.1| - 0.21 11.5 0.0 3.3 7.6 0.0 2.7 2 1 2 4 4 4 0 Eukaryotic translation initiation factor eIF2A Peptidase_M1 PF01433.20 gi|302347851|ref|YP_003815489.1| - 3e-78 262.3 0.2 4.2e-78 261.8 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 gi|302347851|ref|YP_003815489.1| - 5e-32 111.6 0.0 9.2e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain ERAP1_C PF11838.8 gi|302347851|ref|YP_003815489.1| - 8.1e-25 88.0 0.4 1.3e-24 87.3 0.4 1.3 1 0 0 1 1 1 1 ERAP1-like C-terminal domain Aminopep PF10023.9 gi|302347851|ref|YP_003815489.1| - 0.056 12.8 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Putative aminopeptidase ATP-sulfurylase PF01747.17 gi|302347854|ref|YP_003815492.1| - 7.2e-85 283.8 0.0 9.1e-85 283.4 0.0 1.1 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|302347854|ref|YP_003815492.1| - 3.8e-48 163.1 0.0 8.2e-48 162.1 0.0 1.6 2 0 0 2 2 2 1 PUA-like domain RHH_1 PF01402.21 gi|302347855|ref|YP_003815493.1| - 0.013 15.4 0.0 0.056 13.4 0.0 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family PG_binding_2 PF08823.11 gi|302347855|ref|YP_003815493.1| - 0.12 12.7 0.2 0.19 12.0 0.2 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain APS_kinase PF01583.20 gi|302347856|ref|YP_003815494.1| - 7.9e-60 201.3 0.0 9.1e-60 201.1 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_18 PF13238.6 gi|302347856|ref|YP_003815494.1| - 6.3e-09 36.5 0.0 1.1e-08 35.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|302347856|ref|YP_003815494.1| - 1.5e-08 34.4 0.0 1.8e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|302347856|ref|YP_003815494.1| - 2.3e-08 34.3 0.0 3.4e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|302347856|ref|YP_003815494.1| - 8e-05 23.1 0.0 0.00017 22.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|302347856|ref|YP_003815494.1| - 0.00013 21.1 0.0 0.00019 20.5 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|302347856|ref|YP_003815494.1| - 0.00028 20.7 0.1 0.00051 19.8 0.1 1.3 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|302347856|ref|YP_003815494.1| - 0.00043 19.6 0.0 0.00063 19.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.15 gi|302347856|ref|YP_003815494.1| - 0.00048 20.1 0.0 0.0011 18.9 0.0 1.6 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|302347856|ref|YP_003815494.1| - 0.00076 19.9 0.0 0.0009 19.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain CPT PF07931.12 gi|302347856|ref|YP_003815494.1| - 0.00084 19.2 0.1 0.011 15.6 0.1 2.2 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein cobW PF02492.19 gi|302347856|ref|YP_003815494.1| - 0.002 17.7 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|302347856|ref|YP_003815494.1| - 0.0021 18.5 0.0 0.0037 17.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|302347856|ref|YP_003815494.1| - 0.0028 17.3 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SKI PF01202.22 gi|302347856|ref|YP_003815494.1| - 0.0045 17.1 0.1 0.034 14.3 0.1 2.0 1 1 0 1 1 1 1 Shikimate kinase Thymidylate_kin PF02223.17 gi|302347856|ref|YP_003815494.1| - 0.0082 15.8 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Thymidylate kinase AAA_22 PF13401.6 gi|302347856|ref|YP_003815494.1| - 0.012 15.8 0.0 0.036 14.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain ParA PF10609.9 gi|302347856|ref|YP_003815494.1| - 0.02 14.3 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|302347856|ref|YP_003815494.1| - 0.023 14.8 0.0 0.028 14.5 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Cytidylate_kin2 PF13189.6 gi|302347856|ref|YP_003815494.1| - 0.03 14.5 0.0 0.28 11.3 0.0 2.0 1 1 1 2 2 2 0 Cytidylate kinase-like family ATP_bind_1 PF03029.17 gi|302347856|ref|YP_003815494.1| - 0.042 13.6 0.0 0.06 13.1 0.0 1.4 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 gi|302347856|ref|YP_003815494.1| - 0.055 13.5 0.2 0.13 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MobB PF03205.14 gi|302347856|ref|YP_003815494.1| - 0.097 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.6 gi|302347856|ref|YP_003815494.1| - 0.14 11.9 0.0 0.18 11.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|302347856|ref|YP_003815494.1| - 0.18 11.7 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|302347856|ref|YP_003815494.1| - 0.19 12.0 0.0 0.37 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|302347857|ref|YP_003815495.1| - 0.003 17.7 0.4 0.003 17.7 0.4 1.0 1 0 0 1 1 1 1 Helicase HerA, central domain PG_binding_2 PF08823.11 gi|302347857|ref|YP_003815495.1| - 0.021 15.1 0.2 0.04 14.2 0.2 1.5 1 0 0 1 1 1 0 Putative peptidoglycan binding domain POTRA PF07244.15 gi|302347857|ref|YP_003815495.1| - 0.054 14.1 1.0 1.1 9.9 0.1 2.1 1 1 1 2 2 2 0 Surface antigen variable number repeat FolB PF02152.18 gi|302347857|ref|YP_003815495.1| - 0.055 14.0 0.2 0.06 13.9 0.2 1.1 1 0 0 1 1 1 0 Dihydroneopterin aldolase CcdA PF07362.12 gi|302347857|ref|YP_003815495.1| - 0.081 13.4 0.4 0.8 10.2 0.4 2.1 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA GFO_IDH_MocA PF01408.22 gi|302347860|ref|YP_003815498.1| - 1.4e-21 77.5 0.1 2.2e-21 76.9 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|302347860|ref|YP_003815498.1| - 1.6e-07 31.3 0.0 3.2e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|302347860|ref|YP_003815498.1| - 0.0021 18.5 0.1 0.0033 17.9 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|302347860|ref|YP_003815498.1| - 0.014 16.0 0.0 0.025 15.2 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain DUF188 PF02639.14 gi|302347860|ref|YP_003815498.1| - 0.086 12.5 0.0 0.3 10.7 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized BCR, YaiI/YqxD family COG1671 BPD_transp_1 PF00528.22 gi|302347861|ref|YP_003815499.1| - 1.1e-13 51.3 19.9 1.1e-13 51.3 19.9 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|302347862|ref|YP_003815500.1| - 3.2e-31 108.5 13.0 3.2e-31 108.5 13.0 2.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component WSS_VP PF12175.8 gi|302347862|ref|YP_003815500.1| - 0.22 11.0 0.1 0.22 11.0 0.1 2.1 2 0 0 2 2 2 0 White spot syndrome virus structural envelope protein VP DUF4396 PF14342.6 gi|302347862|ref|YP_003815500.1| - 2.4 8.5 9.6 0.27 11.6 0.9 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4396) SBP_bac_5 PF00496.22 gi|302347863|ref|YP_003815501.1| - 1.5e-17 63.7 3.9 5.6e-12 45.3 0.5 3.1 3 1 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle Stevor PF17410.2 gi|302347863|ref|YP_003815501.1| - 0.14 11.6 2.7 0.26 10.8 2.7 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Endopep_inhib PF16800.5 gi|302347863|ref|YP_003815501.1| - 0.18 11.8 2.6 0.41 10.6 2.6 1.6 1 0 0 1 1 1 0 IseA DL-endopeptidase inhibitor RIFIN PF02009.16 gi|302347863|ref|YP_003815501.1| - 0.26 11.2 8.0 0.4 10.5 8.0 1.2 1 0 0 1 1 1 0 Rifin MGC-24 PF05283.11 gi|302347863|ref|YP_003815501.1| - 0.34 11.4 21.7 0.84 10.1 21.7 1.6 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Peptidase_M56 PF05569.11 gi|302347863|ref|YP_003815501.1| - 0.62 9.2 3.5 1.1 8.4 3.5 1.3 1 0 0 1 1 1 0 BlaR1 peptidase M56 DUF5305 PF17231.2 gi|302347863|ref|YP_003815501.1| - 0.86 9.0 18.2 1.4 8.3 18.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5305) TMEM154 PF15102.6 gi|302347863|ref|YP_003815501.1| - 7.4 6.5 18.2 14 5.6 18.2 1.4 1 0 0 1 1 1 0 TMEM154 protein family Glyco_transf_4 PF13439.6 gi|302347864|ref|YP_003815502.1| - 1.7e-07 31.4 0.4 0.00018 21.6 0.2 2.2 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_tran_28_C PF04101.16 gi|302347864|ref|YP_003815502.1| - 6.7e-06 26.2 0.0 1.6e-05 25.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_4_4 PF13579.6 gi|302347864|ref|YP_003815502.1| - 0.00023 21.6 4.1 0.00023 21.6 4.1 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Alg14 PF08660.11 gi|302347864|ref|YP_003815502.1| - 0.013 15.4 0.0 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 Oligosaccharide biosynthesis protein Alg14 like YjeF_N PF03853.15 gi|302347864|ref|YP_003815502.1| - 0.1 12.5 0.1 0.38 10.6 0.0 2.0 2 0 0 2 2 2 0 YjeF-related protein N-terminus GDP_Man_Dehyd PF16363.5 gi|302347865|ref|YP_003815503.1| - 2.2e-60 204.8 0.0 1.5e-59 202.0 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|302347865|ref|YP_003815503.1| - 6.5e-54 182.9 0.0 7.7e-54 182.7 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|302347865|ref|YP_003815503.1| - 2.5e-18 66.1 0.0 3.3e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|302347865|ref|YP_003815503.1| - 1.5e-17 63.6 0.0 2.7e-17 62.8 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|302347865|ref|YP_003815503.1| - 3.4e-15 55.9 0.0 2.5e-14 53.1 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|302347865|ref|YP_003815503.1| - 7.6e-11 41.7 0.2 3.7e-08 32.8 0.0 2.4 1 1 1 2 2 2 2 Male sterility protein TrkA_N PF02254.18 gi|302347865|ref|YP_003815503.1| - 4.2e-05 23.8 0.1 0.00013 22.2 0.1 1.9 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.6 gi|302347865|ref|YP_003815503.1| - 0.00013 21.9 1.6 0.00023 21.1 1.6 1.5 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|302347865|ref|YP_003815503.1| - 0.0002 21.3 1.6 0.00096 19.1 1.6 1.9 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|302347865|ref|YP_003815503.1| - 0.0057 16.2 0.1 0.024 14.2 0.3 1.8 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.25 gi|302347865|ref|YP_003815503.1| - 0.006 16.1 0.2 0.01 15.3 0.2 1.4 1 1 0 1 1 1 1 short chain dehydrogenase Glyco_tranf_2_3 PF13641.6 gi|302347866|ref|YP_003815504.1| - 7.6e-31 107.8 0.0 1.2e-30 107.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|302347866|ref|YP_003815504.1| - 1.9e-22 80.2 1.8 3.2e-22 79.4 1.8 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|302347866|ref|YP_003815504.1| - 6.6e-17 61.8 0.0 1.1e-16 61.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|302347866|ref|YP_003815504.1| - 4.4e-08 32.8 0.0 8.2e-08 31.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Acetyltransf_1 PF00583.25 gi|302347868|ref|YP_003815506.1| - 9.3e-07 29.1 0.0 1.5e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|302347868|ref|YP_003815506.1| - 1.7e-06 28.0 0.0 2.7e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|302347868|ref|YP_003815506.1| - 0.00058 20.2 0.0 0.0011 19.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|302347868|ref|YP_003815506.1| - 0.0059 16.5 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|302347868|ref|YP_003815506.1| - 0.01 16.5 0.0 0.017 15.8 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|302347868|ref|YP_003815506.1| - 0.045 13.9 0.0 0.09 12.9 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Glycos_transf_4 PF00953.21 gi|302347869|ref|YP_003815507.1| - 4.4e-30 104.8 18.6 4.4e-30 104.8 18.6 1.9 3 0 0 3 3 3 1 Glycosyl transferase family 4 Glycos_transf_2 PF00535.26 gi|302347870|ref|YP_003815508.1| - 1.7e-12 47.5 0.0 2.2e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302347870|ref|YP_003815508.1| - 0.063 13.2 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 SfsA PF03749.13 gi|302347873|ref|YP_003815511.1| - 5.2e-36 123.6 0.0 6.7e-36 123.2 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|302347873|ref|YP_003815511.1| - 4.3e-15 55.6 0.1 8e-15 54.8 0.1 1.4 1 0 0 1 1 1 1 SfsA N-terminal OB domain eIF-1a PF01176.19 gi|302347873|ref|YP_003815511.1| - 0.044 13.6 0.0 0.092 12.6 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Phosphodiest PF01663.22 gi|302347874|ref|YP_003815512.1| - 8e-52 177.0 0.0 9.6e-52 176.7 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|302347874|ref|YP_003815512.1| - 0.033 13.6 0.0 0.15 11.4 0.0 2.0 2 0 0 2 2 2 0 Sulfatase DUF229 PF02995.17 gi|302347874|ref|YP_003815512.1| - 0.26 9.9 0.0 0.36 9.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Baculo_PEP_C PF04513.12 gi|302347875|ref|YP_003815513.1| - 4.6e-12 46.2 27.3 1.4e-06 28.4 5.4 3.7 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|302347875|ref|YP_003815513.1| - 1.3e-09 38.1 0.8 0.0053 16.8 0.0 3.6 1 1 1 3 3 3 2 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|302347875|ref|YP_003815513.1| - 9.5e-08 32.4 1.4 0.46 11.0 0.3 3.7 2 2 1 3 3 3 3 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.9 gi|302347875|ref|YP_003815513.1| - 8.3e-06 26.0 1.3 0.12 12.7 0.1 3.5 2 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlaC_arch PF05377.11 gi|302347875|ref|YP_003815513.1| - 0.00014 22.2 8.3 5 7.6 0.9 5.0 2 2 3 5 5 5 0 Flagella accessory protein C (FlaC) COG2 PF06148.11 gi|302347875|ref|YP_003815513.1| - 0.00015 21.9 7.1 3.9 7.6 0.1 3.9 2 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 WEMBL PF05701.11 gi|302347875|ref|YP_003815513.1| - 0.00045 19.0 0.2 0.00065 18.5 0.2 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light Laminin_II PF06009.12 gi|302347875|ref|YP_003815513.1| - 0.00049 20.1 10.0 0.069 13.2 4.4 3.5 2 2 1 3 3 3 2 Laminin Domain II Mce4_CUP1 PF11887.8 gi|302347875|ref|YP_003815513.1| - 0.00056 19.4 4.2 0.00056 19.4 4.2 2.3 2 0 0 2 2 2 1 Cholesterol uptake porter CUP1 of Mce4, putative LPP PF04728.13 gi|302347875|ref|YP_003815513.1| - 0.00071 19.9 20.4 0.97 9.9 0.9 5.7 2 2 2 5 5 5 2 Lipoprotein leucine-zipper IFT57 PF10498.9 gi|302347875|ref|YP_003815513.1| - 0.00088 18.3 0.1 0.084 11.8 0.2 2.2 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 DUF948 PF06103.11 gi|302347875|ref|YP_003815513.1| - 0.002 18.3 6.9 0.011 15.9 1.8 4.9 3 1 2 5 5 3 2 Bacterial protein of unknown function (DUF948) CENP-F_leu_zip PF10473.9 gi|302347875|ref|YP_003815513.1| - 0.0029 17.7 0.0 0.042 13.9 0.0 2.2 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 COG5 PF10392.9 gi|302347875|ref|YP_003815513.1| - 0.0041 17.3 12.0 2.9 8.1 0.1 3.4 1 1 3 4 4 4 1 Golgi transport complex subunit 5 MCPsignal PF00015.21 gi|302347875|ref|YP_003815513.1| - 0.0072 16.2 11.2 0.0072 16.2 11.2 2.3 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain CALCOCO1 PF07888.11 gi|302347875|ref|YP_003815513.1| - 0.021 13.7 0.0 0.03 13.2 0.0 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Dynamitin PF04912.14 gi|302347875|ref|YP_003815513.1| - 0.022 14.1 0.2 0.63 9.3 1.6 2.4 2 1 0 2 2 2 0 Dynamitin DUF1206 PF06724.11 gi|302347875|ref|YP_003815513.1| - 0.022 14.8 1.4 0.11 12.6 1.4 2.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1206) DUF5082 PF16888.5 gi|302347875|ref|YP_003815513.1| - 0.026 14.8 1.2 7.4 6.9 0.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) DUF4407 PF14362.6 gi|302347875|ref|YP_003815513.1| - 0.039 13.3 3.2 0.8 9.0 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4407) AAA_13 PF13166.6 gi|302347875|ref|YP_003815513.1| - 0.041 12.5 0.0 0.058 12.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain Alanine_zipper PF11839.8 gi|302347875|ref|YP_003815513.1| - 0.042 14.2 4.9 0.078 13.3 3.2 2.4 1 1 1 2 2 1 0 Alanine-zipper, major outer membrane lipoprotein Prominin PF05478.11 gi|302347875|ref|YP_003815513.1| - 0.044 11.7 5.6 0.039 11.9 1.0 2.4 1 1 1 2 2 2 0 Prominin Apolipoprotein PF01442.18 gi|302347875|ref|YP_003815513.1| - 0.052 13.4 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF16 PF01519.16 gi|302347875|ref|YP_003815513.1| - 0.063 13.8 0.0 3.6 8.1 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function DUF16 Fib_alpha PF08702.10 gi|302347875|ref|YP_003815513.1| - 0.085 13.0 1.2 4.8 7.4 0.9 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Syntaxin-6_N PF09177.11 gi|302347875|ref|YP_003815513.1| - 0.088 13.4 6.2 1.6 9.4 3.6 3.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DASH_Duo1 PF08651.10 gi|302347875|ref|YP_003815513.1| - 0.14 11.9 9.8 2.5 8.0 0.3 3.4 1 1 2 3 3 3 0 DASH complex subunit Duo1 DUF2730 PF10805.8 gi|302347875|ref|YP_003815513.1| - 0.15 12.2 0.1 13 5.9 0.0 3.2 2 1 0 3 3 3 0 Protein of unknown function (DUF2730) TMPIT PF07851.13 gi|302347875|ref|YP_003815513.1| - 0.16 11.2 0.3 0.52 9.5 0.1 1.8 1 1 0 2 2 2 0 TMPIT-like protein HBM PF16591.5 gi|302347875|ref|YP_003815513.1| - 0.2 11.0 1.5 0.98 8.8 0.1 2.1 2 0 0 2 2 2 0 Helical bimodular sensor domain DASH_Dad3 PF08656.10 gi|302347875|ref|YP_003815513.1| - 0.22 11.6 5.3 1.8 8.7 0.3 4.0 2 2 0 2 2 2 0 DASH complex subunit Dad3 LXG PF04740.12 gi|302347875|ref|YP_003815513.1| - 0.25 11.0 6.1 0.93 9.2 5.4 2.2 1 1 1 2 2 2 0 LXG domain of WXG superfamily MbeD_MobD PF04899.12 gi|302347875|ref|YP_003815513.1| - 0.26 11.4 4.5 1.3 9.2 0.0 3.2 2 2 1 3 3 3 0 MbeD/MobD like APG17 PF04108.12 gi|302347875|ref|YP_003815513.1| - 0.27 10.3 6.4 0.66 9.0 6.2 1.6 1 1 0 1 1 1 0 Autophagy protein Apg17 COG6 PF06419.11 gi|302347875|ref|YP_003815513.1| - 0.29 9.3 4.2 3.2 5.9 1.2 2.7 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 DUF745 PF05335.13 gi|302347875|ref|YP_003815513.1| - 0.32 10.7 6.7 0.03 14.1 1.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF745) SKA1 PF07160.12 gi|302347875|ref|YP_003815513.1| - 0.36 10.7 1.0 3 7.6 0.5 2.4 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 DUF3450 PF11932.8 gi|302347875|ref|YP_003815513.1| - 0.41 9.9 1.0 4 6.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) ApoLp-III PF07464.11 gi|302347875|ref|YP_003815513.1| - 0.47 10.5 7.3 1.3 9.1 4.1 2.2 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) WXG100 PF06013.12 gi|302347875|ref|YP_003815513.1| - 0.5 10.6 9.0 20 5.5 0.4 4.1 1 1 4 5 5 5 0 Proteins of 100 residues with WXG AIP3 PF03915.13 gi|302347875|ref|YP_003815513.1| - 0.51 9.4 2.0 0.84 8.7 2.0 1.3 1 0 0 1 1 1 0 Actin interacting protein 3 Laminin_I PF06008.14 gi|302347875|ref|YP_003815513.1| - 0.91 9.2 3.5 3.3 7.3 0.1 2.1 1 1 1 2 2 2 0 Laminin Domain I Dynactin_p22 PF07426.11 gi|302347875|ref|YP_003815513.1| - 1.1 9.1 3.1 8.9 6.1 3.1 2.4 1 1 0 1 1 1 0 Dynactin subunit p22 RmuC PF02646.16 gi|302347875|ref|YP_003815513.1| - 1.2 8.3 2.4 3.8 6.6 0.2 2.6 2 1 0 2 2 2 0 RmuC family Vps51 PF08700.11 gi|302347875|ref|YP_003815513.1| - 1.8 8.7 10.8 4.5 7.4 0.6 3.7 2 2 2 4 4 4 0 Vps51/Vps67 Sec34 PF04136.15 gi|302347875|ref|YP_003815513.1| - 2.3 8.1 4.9 4.2 7.2 1.0 2.5 2 1 1 3 3 2 0 Sec34-like family Serine_rich PF08824.10 gi|302347875|ref|YP_003815513.1| - 3.1 7.8 4.3 17 5.4 1.8 2.3 1 1 0 2 2 2 0 Serine rich protein interaction domain Collagen_mid PF15984.5 gi|302347875|ref|YP_003815513.1| - 3.5 7.3 44.6 0.6 9.8 22.3 3.5 1 1 1 2 2 2 0 Bacterial collagen, middle region Allexi_40kDa PF05549.11 gi|302347875|ref|YP_003815513.1| - 4 6.9 12.1 5.3 6.5 8.6 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein FPP PF05911.11 gi|302347875|ref|YP_003815513.1| - 7.4 4.6 11.2 2.9 6.0 8.3 1.4 1 1 0 1 1 1 0 Filament-like plant protein, long coiled-coil Uso1_p115_C PF04871.13 gi|302347875|ref|YP_003815513.1| - 9.1 6.7 4.8 10 6.5 1.0 2.5 1 1 2 3 3 3 0 Uso1 / p115 like vesicle tethering protein, C terminal region TruD PF01142.18 gi|302347878|ref|YP_003815516.1| - 4e-57 193.9 0.0 9.9e-52 176.1 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) Glycos_transf_2 PF00535.26 gi|302347879|ref|YP_003815517.1| - 7.7e-29 100.7 0.0 1.1e-28 100.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302347879|ref|YP_003815517.1| - 2.2e-20 73.6 0.0 4.4e-20 72.6 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|302347879|ref|YP_003815517.1| - 6e-11 42.1 0.1 3.6e-10 39.6 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|302347879|ref|YP_003815517.1| - 1.8e-09 37.8 0.2 1.8e-09 37.8 0.2 1.6 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|302347879|ref|YP_003815517.1| - 1.9e-09 37.4 0.0 2.9e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|302347879|ref|YP_003815517.1| - 0.019 15.5 0.0 0.032 14.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 YAcAr PF10686.9 gi|302347879|ref|YP_003815517.1| - 0.038 14.0 0.1 0.18 11.8 0.0 2.1 1 1 1 2 2 2 0 YspA, cpYpsA-related SLOG family AA_permease_2 PF13520.6 gi|302347880|ref|YP_003815518.1| - 1.7e-31 109.5 44.0 3e-31 108.7 44.0 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|302347880|ref|YP_003815518.1| - 8.4e-24 84.0 46.0 1.2e-23 83.4 46.0 1.2 1 0 0 1 1 1 1 Amino acid permease Glycos_transf_2 PF00535.26 gi|302347881|ref|YP_003815519.1| - 7e-28 97.6 0.0 9.5e-28 97.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302347881|ref|YP_003815519.1| - 3.1e-10 40.3 0.0 5.6e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|302347881|ref|YP_003815519.1| - 0.003 17.0 0.0 0.0045 16.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|302347881|ref|YP_003815519.1| - 0.13 12.8 0.0 0.28 11.7 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 DUF58 PF01882.18 gi|302347882|ref|YP_003815520.1| - 2.5e-11 43.7 0.0 4.6e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 Aa_trans PF01490.18 gi|302347882|ref|YP_003815520.1| - 2.1 7.0 4.6 2.9 6.5 4.6 1.1 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein AAA_3 PF07726.11 gi|302347883|ref|YP_003815521.1| - 4.7e-55 185.0 0.8 6.8e-55 184.5 0.1 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|302347883|ref|YP_003815521.1| - 2.8e-18 66.3 0.0 8.2e-18 64.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|302347883|ref|YP_003815521.1| - 2.4e-15 56.1 0.2 5.9e-15 54.9 0.2 1.6 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|302347883|ref|YP_003815521.1| - 5.1e-10 39.9 0.0 1.2e-09 38.7 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|302347883|ref|YP_003815521.1| - 2.1e-09 37.3 0.1 2.6e-08 33.8 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|302347883|ref|YP_003815521.1| - 3.9e-07 29.4 0.0 6.1e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain AAA_16 PF13191.6 gi|302347883|ref|YP_003815521.1| - 1.9e-06 28.4 0.2 0.00011 22.6 0.0 2.4 1 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|302347883|ref|YP_003815521.1| - 1.1e-05 26.0 0.0 4.1e-05 24.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|302347883|ref|YP_003815521.1| - 1.7e-05 24.3 0.3 0.0021 17.5 0.1 2.6 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|302347883|ref|YP_003815521.1| - 3.8e-05 23.4 0.0 0.00018 21.3 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|302347883|ref|YP_003815521.1| - 0.00022 21.4 0.0 0.00055 20.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) TsaE PF02367.17 gi|302347883|ref|YP_003815521.1| - 0.00039 20.4 0.1 0.00078 19.4 0.1 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|302347883|ref|YP_003815521.1| - 0.00067 19.4 3.5 0.0039 16.9 1.4 2.5 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|302347883|ref|YP_003815521.1| - 0.00074 19.7 0.0 0.0015 18.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|302347883|ref|YP_003815521.1| - 0.00091 19.5 0.1 0.0082 16.4 0.1 2.3 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|302347883|ref|YP_003815521.1| - 0.0015 18.9 0.8 0.33 11.3 0.1 2.7 3 0 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|302347883|ref|YP_003815521.1| - 0.0016 18.8 0.0 0.0044 17.4 0.0 1.8 2 0 0 2 2 1 1 RNA helicase MCM_lid PF17855.1 gi|302347883|ref|YP_003815521.1| - 0.0025 18.2 0.3 0.0053 17.2 0.3 1.6 1 0 0 1 1 1 1 MCM AAA-lid domain NTPase_1 PF03266.15 gi|302347883|ref|YP_003815521.1| - 0.0043 17.0 1.1 0.032 14.1 0.0 2.7 4 0 0 4 4 4 1 NTPase RsgA_GTPase PF03193.16 gi|302347883|ref|YP_003815521.1| - 0.0067 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase NACHT PF05729.12 gi|302347883|ref|YP_003815521.1| - 0.0073 16.2 0.1 0.016 15.1 0.1 1.5 1 0 0 1 1 1 1 NACHT domain AAA_11 PF13086.6 gi|302347883|ref|YP_003815521.1| - 0.011 15.5 0.1 0.036 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|302347883|ref|YP_003815521.1| - 0.015 15.7 0.0 0.034 14.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|302347883|ref|YP_003815521.1| - 0.016 15.5 0.0 0.04 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|302347883|ref|YP_003815521.1| - 0.024 14.7 0.2 0.08 13.0 0.0 1.9 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.17 gi|302347883|ref|YP_003815521.1| - 0.027 14.2 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Rad17 PF03215.15 gi|302347883|ref|YP_003815521.1| - 0.035 14.0 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|302347883|ref|YP_003815521.1| - 0.042 13.4 0.7 0.096 12.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|302347883|ref|YP_003815521.1| - 0.046 13.5 0.2 0.41 10.4 0.0 2.3 2 1 0 2 2 2 0 Cytidylate kinase ABC_tran PF00005.27 gi|302347883|ref|YP_003815521.1| - 0.05 14.1 0.0 0.098 13.2 0.0 1.8 1 1 0 1 1 1 0 ABC transporter AAA_23 PF13476.6 gi|302347883|ref|YP_003815521.1| - 0.054 14.0 0.0 0.085 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|302347883|ref|YP_003815521.1| - 0.056 13.3 0.0 0.089 12.6 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase KTI12 PF08433.10 gi|302347883|ref|YP_003815521.1| - 0.073 12.5 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 KAP_NTPase PF07693.14 gi|302347883|ref|YP_003815521.1| - 0.074 12.3 0.2 5.4 6.2 0.0 2.5 3 0 0 3 3 3 0 KAP family P-loop domain Zeta_toxin PF06414.12 gi|302347883|ref|YP_003815521.1| - 0.075 12.3 0.0 0.19 11.0 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin Sigma54_activ_2 PF14532.6 gi|302347883|ref|YP_003815521.1| - 0.078 13.1 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|302347883|ref|YP_003815521.1| - 0.081 12.4 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Thymidylate_kin PF02223.17 gi|302347883|ref|YP_003815521.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase AAA_24 PF13479.6 gi|302347883|ref|YP_003815521.1| - 0.14 11.8 0.2 0.31 10.7 0.0 1.6 2 0 0 2 2 1 0 AAA domain DUF4390 PF14334.6 gi|302347883|ref|YP_003815521.1| - 0.17 11.3 0.3 17 4.8 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4390) DUF1641 PF07849.11 gi|302347884|ref|YP_003815522.1| - 0.00019 21.2 0.0 0.00065 19.5 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) DUF1631 PF07793.11 gi|302347884|ref|YP_003815522.1| - 1.2 7.4 5.7 1.4 7.3 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) SBP_bac_5 PF00496.22 gi|302347885|ref|YP_003815523.1| - 1.1e-42 146.4 4.7 1.8e-42 145.6 4.7 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MIT PF04212.18 gi|302347885|ref|YP_003815523.1| - 0.15 12.2 0.7 0.52 10.4 0.7 1.9 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain PKD PF00801.20 gi|302347885|ref|YP_003815523.1| - 0.28 11.1 2.9 2.7 7.9 0.0 3.8 3 1 1 4 4 4 0 PKD domain DUF3485 PF11984.8 gi|302347885|ref|YP_003815523.1| - 1 9.1 6.3 0.66 9.7 0.0 3.1 3 1 1 4 4 4 0 Protein of unknown function (DUF3485) ABC_tran PF00005.27 gi|302347886|ref|YP_003815524.1| - 1.8e-30 106.3 0.0 2.7e-30 105.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|302347886|ref|YP_003815524.1| - 2.2e-13 50.8 0.1 6.8e-13 49.2 0.1 1.9 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|302347886|ref|YP_003815524.1| - 6.2e-12 45.5 0.2 1.9e-11 43.9 0.2 1.9 1 0 0 1 1 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|302347886|ref|YP_003815524.1| - 2.3e-07 31.3 0.1 1.3e-06 28.9 0.1 2.5 2 0 0 2 2 1 1 CysA C-terminal regulatory domain AAA_21 PF13304.6 gi|302347886|ref|YP_003815524.1| - 1e-06 28.8 0.0 0.022 14.6 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|302347886|ref|YP_003815524.1| - 3.2e-05 23.9 0.0 0.01 15.7 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|302347886|ref|YP_003815524.1| - 0.00011 22.7 0.0 0.00023 21.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain TOBE PF03459.17 gi|302347886|ref|YP_003815524.1| - 0.00013 22.2 0.3 0.0013 19.0 0.0 2.6 3 0 0 3 3 2 1 TOBE domain SMC_N PF02463.19 gi|302347886|ref|YP_003815524.1| - 0.0015 18.0 0.2 0.0064 16.0 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain NACHT PF05729.12 gi|302347886|ref|YP_003815524.1| - 0.0027 17.6 0.0 0.0065 16.4 0.0 1.6 1 0 0 1 1 1 1 NACHT domain NTPase_1 PF03266.15 gi|302347886|ref|YP_003815524.1| - 0.0047 16.9 0.1 0.3 11.0 0.0 2.6 3 0 0 3 3 3 1 NTPase AAA_30 PF13604.6 gi|302347886|ref|YP_003815524.1| - 0.0057 16.4 0.1 0.024 14.3 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|302347886|ref|YP_003815524.1| - 0.021 15.1 0.1 0.064 13.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|302347886|ref|YP_003815524.1| - 0.026 14.5 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|302347886|ref|YP_003815524.1| - 0.033 13.2 0.0 0.058 12.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|302347886|ref|YP_003815524.1| - 0.035 13.7 0.1 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|302347886|ref|YP_003815524.1| - 0.04 12.7 0.1 3.6 6.3 0.2 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|302347886|ref|YP_003815524.1| - 0.068 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|302347886|ref|YP_003815524.1| - 0.072 13.6 0.0 0.16 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|302347886|ref|YP_003815524.1| - 0.082 13.1 0.0 0.25 11.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|302347886|ref|YP_003815524.1| - 0.085 13.3 0.4 0.39 11.1 0.4 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|302347886|ref|YP_003815524.1| - 0.12 12.4 0.0 1.2 9.2 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain TniB PF05621.11 gi|302347886|ref|YP_003815524.1| - 0.13 11.6 0.1 4.5 6.6 0.0 2.5 2 1 0 2 2 2 0 Bacterial TniB protein RNA_helicase PF00910.22 gi|302347886|ref|YP_003815524.1| - 0.16 12.4 0.0 0.45 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|302347887|ref|YP_003815525.1| - 3.2e-12 46.6 20.5 3.2e-12 46.6 20.5 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|302347888|ref|YP_003815526.1| - 7.5e-16 58.4 19.9 7.5e-16 58.4 19.9 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|302347889|ref|YP_003815527.1| - 2e-25 90.2 7.8 3.8e-25 89.3 7.8 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SpoIIIAH PF12685.7 gi|302347889|ref|YP_003815527.1| - 0.013 15.3 1.8 0.022 14.6 1.8 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein DUF3357 PF11837.8 gi|302347889|ref|YP_003815527.1| - 0.078 13.4 1.4 0.19 12.2 1.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) DUF4330 PF14221.6 gi|302347889|ref|YP_003815527.1| - 0.21 11.8 5.0 0.43 10.8 5.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Mucin PF01456.17 gi|302347889|ref|YP_003815527.1| - 2.4 8.2 44.5 5.2 7.1 44.5 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein Shisa PF13908.6 gi|302347889|ref|YP_003815527.1| - 4.3 7.5 10.1 7.8 6.7 10.1 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Phosphodiest PF01663.22 gi|302347890|ref|YP_003815528.1| - 2.7e-15 56.8 0.0 4.1e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Lactamase_B PF00753.27 gi|302347892|ref|YP_003815530.1| - 5.3e-23 82.1 4.5 8.8e-23 81.3 4.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|302347892|ref|YP_003815530.1| - 7.3e-05 22.4 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SIR2 PF02146.17 gi|302347893|ref|YP_003815531.1| - 1e-51 175.4 0.0 1.3e-51 175.1 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.10 gi|302347893|ref|YP_003815531.1| - 0.00052 20.1 0.6 0.00099 19.2 0.6 1.4 1 0 0 1 1 1 1 Zinc ribbon domain TPP_enzyme_M PF00205.22 gi|302347893|ref|YP_003815531.1| - 0.0009 19.0 0.0 0.18 11.5 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain HypA PF01155.19 gi|302347893|ref|YP_003815531.1| - 0.015 15.3 0.0 0.047 13.7 0.0 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ADK_lid PF05191.14 gi|302347893|ref|YP_003815531.1| - 0.026 14.5 0.5 0.053 13.5 0.5 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid SIS PF01380.22 gi|302347893|ref|YP_003815531.1| - 0.043 13.7 0.3 0.45 10.4 0.0 2.1 2 0 0 2 2 2 0 SIS domain zinc_ribbon_4 PF13717.6 gi|302347893|ref|YP_003815531.1| - 0.046 13.6 0.5 0.091 12.7 0.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|302347893|ref|YP_003815531.1| - 0.056 13.4 2.0 0.5 10.3 0.3 2.3 2 0 0 2 2 2 0 Nudix N-terminal DZR PF12773.7 gi|302347893|ref|YP_003815531.1| - 0.094 12.8 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|302347893|ref|YP_003815531.1| - 0.57 10.0 2.7 3.6 7.4 2.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|302347893|ref|YP_003815531.1| - 1.1 8.9 4.1 6.1 6.4 0.2 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding TGS PF02824.21 gi|302347895|ref|YP_003815533.1| - 4.4e-15 55.5 0.0 1.2e-14 54.1 0.0 1.8 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|302347895|ref|YP_003815533.1| - 1.2e-14 54.4 0.0 3.1e-14 53.0 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|302347895|ref|YP_003815533.1| - 2.3e-13 50.0 0.0 3.8e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|302347895|ref|YP_003815533.1| - 7e-06 25.6 0.0 1.2e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Roc PF08477.13 gi|302347895|ref|YP_003815533.1| - 0.047 13.9 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Mg_chelatase PF01078.21 gi|302347895|ref|YP_003815533.1| - 0.054 12.9 0.0 0.08 12.3 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRPRB PF09439.10 gi|302347895|ref|YP_003815533.1| - 0.06 12.8 0.0 0.088 12.2 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|302347895|ref|YP_003815533.1| - 0.15 12.1 0.7 0.99 9.4 0.1 2.2 2 0 0 2 2 2 0 Dynamin family MazE_antitoxin PF04014.18 gi|302347896|ref|YP_003815534.1| - 5.2e-12 45.4 2.1 7.8e-12 44.8 0.5 2.2 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin CheY-binding PF09078.11 gi|302347896|ref|YP_003815534.1| - 0.11 12.7 0.1 0.25 11.5 0.1 1.6 1 0 0 1 1 1 0 CheY binding FeoA PF04023.14 gi|302347896|ref|YP_003815534.1| - 0.17 12.2 1.2 0.44 10.8 0.0 2.3 3 0 0 3 3 3 0 FeoA domain POR PF01558.18 gi|302347897|ref|YP_003815535.1| - 4.5e-40 137.6 0.1 5.2e-40 137.4 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Thump_like PF18096.1 gi|302347897|ref|YP_003815535.1| - 0.095 12.6 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 THUMP domain-like Fer4 PF00037.27 gi|302347898|ref|YP_003815536.1| - 1.3e-16 59.6 17.1 2.5e-08 33.4 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|302347898|ref|YP_003815536.1| - 3e-12 46.5 8.6 4.1e-12 46.1 8.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|302347898|ref|YP_003815536.1| - 3.8e-10 40.2 10.0 5.8e-10 39.6 10.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|302347898|ref|YP_003815536.1| - 1.6e-09 37.4 17.2 3e-05 23.9 5.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|302347898|ref|YP_003815536.1| - 3.1e-09 36.8 10.6 5.5e-09 36.0 10.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|302347898|ref|YP_003815536.1| - 4.1e-09 37.2 9.1 0.00017 22.4 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|302347898|ref|YP_003815536.1| - 2.3e-08 34.0 9.5 3.7e-08 33.4 9.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|302347898|ref|YP_003815536.1| - 2.7e-08 33.4 11.7 0.00014 21.8 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|302347898|ref|YP_003815536.1| - 9.1e-08 32.4 8.3 1.2e-07 32.0 8.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|302347898|ref|YP_003815536.1| - 2.4e-05 25.0 11.7 0.014 16.2 0.8 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|302347898|ref|YP_003815536.1| - 0.0001 22.8 14.0 0.002 18.6 4.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|302347898|ref|YP_003815536.1| - 0.00019 21.9 11.0 0.00064 20.2 11.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|302347898|ref|YP_003815536.1| - 0.0016 18.8 14.7 0.036 14.6 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|302347898|ref|YP_003815536.1| - 0.0033 18.2 10.3 0.011 16.5 1.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|302347898|ref|YP_003815536.1| - 0.63 10.3 9.6 2.1 8.5 1.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain MqsA_antitoxin PF15731.5 gi|302347898|ref|YP_003815536.1| - 0.92 9.6 3.4 1.3 9.1 3.4 1.2 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Fer4_3 PF12798.7 gi|302347898|ref|YP_003815536.1| - 1.2 10.2 16.9 1.1 10.3 7.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 gi|302347899|ref|YP_003815537.1| - 1.5e-71 240.8 1.7 2.3e-71 240.2 1.7 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|302347899|ref|YP_003815537.1| - 9.2e-22 77.3 0.0 2e-21 76.2 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_C PF02775.21 gi|302347900|ref|YP_003815538.1| - 2.8e-24 85.6 0.1 4.1e-24 85.1 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AA_permease_2 PF13520.6 gi|302347901|ref|YP_003815539.1| - 3.5e-26 92.0 64.3 1e-25 90.5 64.2 1.9 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|302347901|ref|YP_003815539.1| - 1.6e-11 43.5 64.5 2.3e-11 43.0 62.0 2.1 1 1 0 1 1 1 1 Amino acid permease tRNA-synt_2 PF00152.20 gi|302347902|ref|YP_003815540.1| - 8.3e-79 264.9 0.0 1e-78 264.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|302347902|ref|YP_003815540.1| - 3.5e-10 39.7 0.1 7e-10 38.8 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|302347902|ref|YP_003815540.1| - 6.5e-09 35.6 0.1 2.6e-05 23.8 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) GlutR_N PF05201.15 gi|302347904|ref|YP_003815542.1| - 1.7e-31 109.0 0.1 7.5e-31 106.9 0.0 1.9 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|302347904|ref|YP_003815542.1| - 1.8e-10 41.0 0.2 4.9e-10 39.6 0.0 1.9 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|302347904|ref|YP_003815542.1| - 4e-08 33.6 0.6 8.1e-08 32.6 0.6 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|302347904|ref|YP_003815542.1| - 0.0014 19.2 0.1 0.0054 17.3 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|302347904|ref|YP_003815542.1| - 0.004 17.6 0.0 0.026 15.0 0.0 2.3 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|302347904|ref|YP_003815542.1| - 0.015 16.1 0.0 0.027 15.3 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF4147 PF13660.6 gi|302347904|ref|YP_003815542.1| - 0.062 12.8 0.2 0.15 11.6 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4147) K_oxygenase PF13434.6 gi|302347904|ref|YP_003815542.1| - 0.15 11.2 0.1 0.26 10.4 0.1 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) ALAD PF00490.21 gi|302347905|ref|YP_003815543.1| - 1.1e-136 455.1 0.0 1.3e-136 455.0 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase MFS_1 PF07690.16 gi|302347906|ref|YP_003815544.1| - 5.4e-17 61.7 47.5 1.5e-09 37.3 19.5 2.4 2 1 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|302347906|ref|YP_003815544.1| - 0.00061 18.8 4.0 0.024 13.5 0.1 2.2 1 1 0 2 2 2 2 MFS_1 like family NTP_transferase PF00483.23 gi|302347907|ref|YP_003815545.1| - 3.4e-13 49.8 0.0 4.9e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|302347907|ref|YP_003815545.1| - 4.9e-11 43.2 0.4 7.1e-11 42.7 0.4 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|302347907|ref|YP_003815545.1| - 7.5e-11 41.3 16.4 0.00048 19.7 0.1 4.4 4 1 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|302347907|ref|YP_003815545.1| - 0.012 15.3 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|302347907|ref|YP_003815545.1| - 0.048 11.8 2.2 0.75 7.8 2.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) Hexapep_2 PF14602.6 gi|302347907|ref|YP_003815545.1| - 2.9 7.7 15.8 3.1 7.6 1.2 4.1 2 1 1 3 3 3 0 Hexapeptide repeat of succinyl-transferase SIS PF01380.22 gi|302347908|ref|YP_003815546.1| - 1.4e-44 151.1 1.0 4.6e-28 97.7 0.3 2.6 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|302347908|ref|YP_003815546.1| - 1.9e-23 83.1 0.1 3.9e-23 82.1 0.1 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|302347908|ref|YP_003815546.1| - 3.7e-18 65.6 0.0 1e-17 64.2 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|302347908|ref|YP_003815546.1| - 4.7e-05 23.4 1.4 0.00016 21.7 0.1 2.3 2 1 0 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|302347908|ref|YP_003815546.1| - 0.058 12.3 0.0 0.13 11.2 0.0 1.5 2 0 0 2 2 2 0 Glutamine amidotransferases class-II PBP PF01161.20 gi|302347909|ref|YP_003815547.1| - 7e-38 129.9 0.0 8.5e-38 129.7 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein RNA_pol_Rpc34 PF05158.12 gi|302347910|ref|YP_003815548.1| - 0.0064 15.9 0.0 0.0089 15.4 0.0 1.2 1 1 0 1 1 1 1 RNA polymerase Rpc34 subunit MarR_2 PF12802.7 gi|302347910|ref|YP_003815548.1| - 0.022 14.6 0.7 0.035 14.0 0.7 1.3 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|302347910|ref|YP_003815548.1| - 0.025 14.5 0.3 0.038 13.9 0.3 1.3 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.12 gi|302347910|ref|YP_003815548.1| - 0.037 14.2 0.0 0.052 13.7 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC SRP19 PF01922.17 gi|302347911|ref|YP_003815549.1| - 6.6e-18 65.4 0.0 8.3e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein Radical_SAM PF04055.21 gi|302347912|ref|YP_003815550.1| - 2.4e-19 70.3 0.0 4.4e-18 66.2 0.0 2.6 1 1 1 3 3 3 1 Radical SAM superfamily SPASM PF13186.6 gi|302347912|ref|YP_003815550.1| - 6.7e-05 23.3 0.0 0.00019 21.9 0.0 1.8 1 1 1 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|302347912|ref|YP_003815550.1| - 0.0048 17.0 0.0 0.009 16.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|302347912|ref|YP_003815550.1| - 0.0048 17.2 0.0 0.0084 16.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain OTOS PF15182.6 gi|302347912|ref|YP_003815550.1| - 0.082 12.8 0.2 26 4.8 0.0 2.8 3 0 0 3 3 3 0 Otospiralin AsnC_trans_reg2 PF17805.1 gi|302347913|ref|YP_003815551.1| - 1.2e-31 108.7 0.0 1.8e-17 63.2 0.0 2.2 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_28 PF13518.6 gi|302347913|ref|YP_003815551.1| - 0.011 15.8 0.4 9.5 6.4 0.0 3.4 4 0 0 4 4 4 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|302347913|ref|YP_003815551.1| - 0.042 13.8 0.0 4.5 7.3 0.0 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Radical_SAM PF04055.21 gi|302347914|ref|YP_003815552.1| - 1.6e-22 80.7 0.0 3e-22 79.8 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|302347914|ref|YP_003815552.1| - 4e-09 36.8 0.1 1e-08 35.6 0.1 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|302347914|ref|YP_003815552.1| - 9.9e-07 29.1 0.0 2.3e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|302347914|ref|YP_003815552.1| - 0.00029 20.9 0.0 0.00082 19.5 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain NAD_binding_7 PF13241.6 gi|302347915|ref|YP_003815553.1| - 5.8e-23 81.3 0.8 1.1e-22 80.5 0.1 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|302347915|ref|YP_003815553.1| - 0.00031 20.8 0.0 0.00055 20.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|302347915|ref|YP_003815553.1| - 0.0045 16.3 0.5 0.0092 15.3 0.5 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|302347915|ref|YP_003815553.1| - 0.0061 17.1 0.3 0.018 15.6 0.3 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|302347915|ref|YP_003815553.1| - 0.0079 16.4 0.4 0.016 15.5 0.4 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.6 gi|302347915|ref|YP_003815553.1| - 0.0097 15.8 0.9 0.015 15.2 0.9 1.3 1 0 0 1 1 1 1 NAD(P)H-binding FAD_binding_2 PF00890.24 gi|302347915|ref|YP_003815553.1| - 0.01 14.9 0.6 0.013 14.6 0.6 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_2 PF07992.14 gi|302347915|ref|YP_003815553.1| - 0.013 14.8 0.1 0.019 14.2 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|302347915|ref|YP_003815553.1| - 0.019 15.5 0.5 0.037 14.6 0.5 1.5 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 gi|302347915|ref|YP_003815553.1| - 0.023 15.2 0.1 0.038 14.5 0.1 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain GFO_IDH_MocA PF01408.22 gi|302347915|ref|YP_003815553.1| - 0.036 14.9 0.1 0.056 14.3 0.1 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.12 gi|302347915|ref|YP_003815553.1| - 0.047 13.3 0.1 0.086 12.4 0.1 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ThiF PF00899.21 gi|302347915|ref|YP_003815553.1| - 0.058 12.8 1.2 0.073 12.4 0.1 1.7 1 1 1 2 2 2 0 ThiF family ApbA PF02558.16 gi|302347915|ref|YP_003815553.1| - 0.069 12.8 0.1 0.097 12.3 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short PF00106.25 gi|302347915|ref|YP_003815553.1| - 0.084 12.3 0.9 0.48 9.9 0.9 2.0 1 1 0 1 1 1 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 gi|302347915|ref|YP_003815553.1| - 0.11 11.8 0.2 0.24 10.7 0.2 1.6 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|302347915|ref|YP_003815553.1| - 0.12 12.2 0.3 0.2 11.5 0.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|302347915|ref|YP_003815553.1| - 0.14 11.4 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Smoothelin PF12510.8 gi|302347916|ref|YP_003815554.1| - 0.15 12.1 0.2 1.4 9.0 0.0 2.1 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein Amidinotransf PF02274.17 gi|302347917|ref|YP_003815555.1| - 2.5e-33 115.6 0.1 2.6e-31 109.0 0.1 2.1 1 1 0 1 1 1 1 Amidinotransferase PAD_porph PF04371.15 gi|302347917|ref|YP_003815555.1| - 0.017 14.4 0.5 0.073 12.3 0.1 1.9 2 0 0 2 2 2 0 Porphyromonas-type peptidyl-arginine deiminase PNP_UDP_1 PF01048.20 gi|302347918|ref|YP_003815556.1| - 4.7e-37 127.5 0.5 5.6e-37 127.2 0.5 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily CN_hydrolase PF00795.22 gi|302347919|ref|YP_003815557.1| - 3e-18 66.1 0.0 3.7e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase 2-Hacid_dh_C PF02826.19 gi|302347920|ref|YP_003815558.1| - 1.7e-66 223.0 0.0 2.8e-66 222.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|302347920|ref|YP_003815558.1| - 1.2e-34 118.8 0.0 1.4e-34 118.6 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|302347920|ref|YP_003815558.1| - 0.0021 18.6 0.0 0.005 17.4 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|302347920|ref|YP_003815558.1| - 0.0081 15.7 0.0 0.025 14.2 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|302347920|ref|YP_003815558.1| - 0.0087 16.2 0.1 0.021 15.0 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 gi|302347920|ref|YP_003815558.1| - 0.025 15.1 0.0 0.05 14.1 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain AdoHcyase_NAD PF00670.21 gi|302347920|ref|YP_003815558.1| - 0.033 14.3 0.0 0.066 13.3 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.6 gi|302347920|ref|YP_003815558.1| - 0.039 14.4 0.0 0.16 12.4 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding CCG PF02754.16 gi|302347921|ref|YP_003815559.1| - 8.5e-25 86.8 0.0 2.3e-11 43.8 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|302347921|ref|YP_003815559.1| - 2.1e-11 44.1 3.7 5.9e-11 42.6 3.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|302347921|ref|YP_003815559.1| - 2.3e-09 37.2 6.2 2.3e-09 37.2 6.2 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|302347921|ref|YP_003815559.1| - 9.5e-09 35.3 7.5 9.5e-09 35.3 7.5 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|302347921|ref|YP_003815559.1| - 3.3e-07 30.7 2.8 1.1e-06 29.0 2.8 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|302347921|ref|YP_003815559.1| - 3.8e-07 29.8 12.2 0.00046 20.1 2.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|302347921|ref|YP_003815559.1| - 7.6e-07 29.6 7.7 4.7e-06 27.1 8.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Nitrate_red_gam PF02665.14 gi|302347921|ref|YP_003815559.1| - 5.7e-06 26.0 6.0 9.2e-06 25.3 6.0 1.3 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Fer4_6 PF12837.7 gi|302347921|ref|YP_003815559.1| - 0.00027 20.9 14.2 0.0037 17.3 2.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|302347921|ref|YP_003815559.1| - 0.00042 20.6 16.8 0.0062 17.0 1.6 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|302347921|ref|YP_003815559.1| - 0.00046 19.9 19.9 0.0013 18.5 0.9 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|302347921|ref|YP_003815559.1| - 0.00078 19.5 5.9 0.33 11.1 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|302347921|ref|YP_003815559.1| - 0.00084 20.1 3.9 0.22 12.4 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|302347921|ref|YP_003815559.1| - 0.00094 19.9 2.9 0.75 10.6 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|302347921|ref|YP_003815559.1| - 0.0073 16.5 3.4 0.57 10.4 0.1 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|302347921|ref|YP_003815559.1| - 0.012 16.6 12.6 0.49 11.4 14.0 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain DUF3262 PF11660.8 gi|302347921|ref|YP_003815559.1| - 0.3 11.5 3.3 1.6 9.1 3.3 2.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3262) Fer4_13 PF13370.6 gi|302347921|ref|YP_003815559.1| - 0.55 10.8 11.6 1.1 9.8 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I HSP20 PF00011.21 gi|302347922|ref|YP_003815560.1| - 5.8e-09 36.0 0.0 7.8e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|302347922|ref|YP_003815560.1| - 0.0014 18.1 0.0 0.003 17.1 0.0 1.6 1 1 0 1 1 1 1 HSP20-like domain found in ArsA Haem_degrading PF03928.14 gi|302347922|ref|YP_003815560.1| - 0.005 16.9 0.0 0.0077 16.3 0.0 1.3 1 0 0 1 1 1 1 Haem-degrading GvpH PF05455.11 gi|302347922|ref|YP_003815560.1| - 0.074 13.1 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 GvpH CS PF04969.16 gi|302347922|ref|YP_003815560.1| - 0.18 12.8 0.0 0.33 12.0 0.0 1.4 1 1 0 1 1 1 0 CS domain PAC2 PF09754.9 gi|302347923|ref|YP_003815561.1| - 1.6e-31 110.0 0.2 1.8e-31 109.8 0.2 1.0 1 0 0 1 1 1 1 PAC2 family Fer4_13 PF13370.6 gi|302347924|ref|YP_003815562.1| - 7e-18 64.9 3.0 9.1e-18 64.6 3.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|302347924|ref|YP_003815562.1| - 3.7e-14 53.2 3.0 4.2e-14 53.0 3.0 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Gln-synt_C PF00120.24 gi|302347925|ref|YP_003815563.1| - 2.3e-118 395.2 0.0 2.7e-118 394.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|302347925|ref|YP_003815563.1| - 1.9e-17 62.8 0.0 4.2e-17 61.7 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain MazE_antitoxin PF04014.18 gi|302347926|ref|YP_003815564.1| - 1.5e-10 40.7 0.1 2.7e-10 39.9 0.1 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF3408 PF11888.8 gi|302347926|ref|YP_003815564.1| - 0.12 12.5 0.3 0.22 11.7 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3408) DNMT1-RFD PF12047.8 gi|302347927|ref|YP_003815565.1| - 0.064 13.3 1.6 0.17 11.9 1.4 1.7 2 0 0 2 2 2 0 Cytosine specific DNA methyltransferase replication foci domain LAGLIDADG_WhiA PF14527.6 gi|302347927|ref|YP_003815565.1| - 0.096 12.8 0.2 0.89 9.7 0.0 2.1 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain Cytidylate_kin2 PF13189.6 gi|302347928|ref|YP_003815566.1| - 7.7e-18 65.2 0.1 2.3e-08 34.4 0.1 2.0 1 1 1 2 2 2 2 Cytidylate kinase-like family AAA_18 PF13238.6 gi|302347928|ref|YP_003815566.1| - 6.9e-14 52.5 0.0 1e-13 52.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|302347928|ref|YP_003815566.1| - 1.6e-11 44.8 0.0 2.6e-11 44.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|302347928|ref|YP_003815566.1| - 3.8e-10 39.9 0.5 1.4e-05 25.0 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase dNK PF01712.19 gi|302347928|ref|YP_003815566.1| - 1.7e-06 28.0 0.0 0.022 14.6 0.0 2.1 1 1 0 2 2 2 2 Deoxynucleoside kinase AAA_33 PF13671.6 gi|302347928|ref|YP_003815566.1| - 4.5e-06 26.9 0.3 3.9e-05 23.8 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|302347928|ref|YP_003815566.1| - 8.8e-06 26.2 0.1 1.1e-05 25.9 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|302347928|ref|YP_003815566.1| - 5.5e-05 23.5 0.0 8.1e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|302347928|ref|YP_003815566.1| - 0.00015 22.0 0.1 0.0018 18.4 0.1 2.2 1 1 0 1 1 1 1 Shikimate kinase Zeta_toxin PF06414.12 gi|302347928|ref|YP_003815566.1| - 0.00046 19.5 0.0 0.001 18.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 gi|302347928|ref|YP_003815566.1| - 0.00049 20.4 0.1 0.00065 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|302347928|ref|YP_003815566.1| - 0.00069 19.2 0.0 0.00096 18.7 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NACHT PF05729.12 gi|302347928|ref|YP_003815566.1| - 0.0011 18.9 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|302347928|ref|YP_003815566.1| - 0.0019 18.6 0.0 0.0036 17.7 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|302347928|ref|YP_003815566.1| - 0.0034 17.5 0.0 0.0055 16.8 0.0 1.3 1 0 0 1 1 1 1 Adenylate kinase AAA_30 PF13604.6 gi|302347928|ref|YP_003815566.1| - 0.0073 16.0 0.0 0.013 15.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|302347928|ref|YP_003815566.1| - 0.0075 16.6 0.0 0.012 15.9 0.0 1.4 1 0 0 1 1 1 1 RNA helicase Viral_helicase1 PF01443.18 gi|302347928|ref|YP_003815566.1| - 0.015 15.0 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|302347928|ref|YP_003815566.1| - 0.02 14.1 0.0 0.026 13.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MeaB PF03308.16 gi|302347928|ref|YP_003815566.1| - 0.023 13.7 0.0 0.04 12.9 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|302347928|ref|YP_003815566.1| - 0.027 14.5 0.0 0.04 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|302347928|ref|YP_003815566.1| - 0.031 13.8 0.0 0.26 10.8 0.0 2.1 1 1 1 2 2 2 0 AAA domain E3_binding PF02817.17 gi|302347928|ref|YP_003815566.1| - 0.032 14.6 0.1 12 6.4 0.0 3.3 3 0 0 3 3 3 0 e3 binding domain ParA PF10609.9 gi|302347928|ref|YP_003815566.1| - 0.042 13.3 0.0 0.063 12.7 0.0 1.2 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase NTPase_1 PF03266.15 gi|302347928|ref|YP_003815566.1| - 0.048 13.6 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 NTPase CPT PF07931.12 gi|302347928|ref|YP_003815566.1| - 0.053 13.4 0.1 2.2 8.1 0.1 2.4 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein CobU PF02283.16 gi|302347928|ref|YP_003815566.1| - 0.073 12.6 0.2 0.13 11.8 0.2 1.6 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase RuvB_N PF05496.12 gi|302347928|ref|YP_003815566.1| - 0.08 12.7 0.0 0.25 11.1 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Thymidylate_kin PF02223.17 gi|302347928|ref|YP_003815566.1| - 0.084 12.5 0.2 19 4.8 0.0 2.9 2 1 1 3 3 3 0 Thymidylate kinase PRK PF00485.18 gi|302347928|ref|YP_003815566.1| - 0.091 12.5 0.0 0.51 10.0 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.6 gi|302347928|ref|YP_003815566.1| - 0.094 13.0 0.0 0.27 11.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|302347928|ref|YP_003815566.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PknG_rubred PF16919.5 gi|302347928|ref|YP_003815566.1| - 0.12 12.5 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain CoaE PF01121.20 gi|302347928|ref|YP_003815566.1| - 0.14 11.8 0.0 3.4 7.3 0.0 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase AAA_24 PF13479.6 gi|302347928|ref|YP_003815566.1| - 0.14 11.8 0.0 0.29 10.8 0.0 1.7 1 1 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|302347928|ref|YP_003815566.1| - 0.16 11.9 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Alba PF01918.21 gi|302347929|ref|YP_003815567.1| - 2.4e-18 65.7 1.2 3.6e-18 65.1 1.2 1.3 1 0 0 1 1 1 1 Alba Peptidase_M48 PF01435.18 gi|302347930|ref|YP_003815568.1| - 1e-32 113.5 0.0 2.2e-32 112.4 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|302347930|ref|YP_003815568.1| - 0.00039 19.7 0.9 0.00056 19.2 0.1 1.7 2 1 0 2 2 2 1 BlaR1 peptidase M56 Tetraspanin PF00335.20 gi|302347930|ref|YP_003815568.1| - 0.04 13.6 5.9 0.48 10.1 2.5 2.2 2 0 0 2 2 2 0 Tetraspanin family S1FA PF04689.13 gi|302347930|ref|YP_003815568.1| - 0.26 11.4 0.2 0.26 11.4 0.2 2.1 2 0 0 2 2 2 0 DNA binding protein S1FA DUF373 PF04123.13 gi|302347930|ref|YP_003815568.1| - 7.6 5.9 9.0 2.3 7.6 4.9 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DNA_pol_B PF00136.21 gi|302347931|ref|YP_003815569.1| - 1.3e-49 169.2 0.1 2.4e-49 168.3 0.1 1.4 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|302347931|ref|YP_003815569.1| - 6.4e-31 107.7 0.0 1.3e-30 106.8 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|302347931|ref|YP_003815569.1| - 1.5e-05 25.0 0.3 0.00012 22.2 0.1 2.5 2 1 0 2 2 2 1 RNase_H superfamily DUF3311 PF11755.8 gi|302347934|ref|YP_003815572.1| - 5.3e-13 48.7 8.8 6.4e-13 48.4 8.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) Saf_2TM PF18303.1 gi|302347934|ref|YP_003815572.1| - 0.12 12.0 3.1 0.14 11.7 3.1 1.0 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain CsgF PF10614.9 gi|302347934|ref|YP_003815572.1| - 0.18 12.0 0.2 0.24 11.6 0.2 1.1 1 0 0 1 1 1 0 Type VIII secretion system (T8SS), CsgF protein DUF2070 PF09843.9 gi|302347934|ref|YP_003815572.1| - 0.23 9.7 3.8 0.28 9.4 3.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2283 PF10049.9 gi|302347935|ref|YP_003815573.1| - 1.8e-12 47.3 0.7 2.2e-12 47.0 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Hrs_helical PF12210.8 gi|302347936|ref|YP_003815574.1| - 0.00019 21.9 1.1 0.0003 21.2 1.1 1.3 1 0 0 1 1 1 1 Hepatocyte growth factor-regulated tyrosine kinase substrate DUF4370 PF14290.6 gi|302347936|ref|YP_003815574.1| - 0.048 13.5 0.0 0.071 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4370) DUF2508 PF10704.9 gi|302347936|ref|YP_003815574.1| - 0.051 13.8 0.4 0.16 12.2 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2508) IFT81_CH PF18383.1 gi|302347936|ref|YP_003815574.1| - 0.12 12.7 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 Intraflagellar transport 81 calponin homology domain Molydop_binding PF01568.21 gi|302347937|ref|YP_003815575.1| - 7.1e-05 22.8 0.3 0.085 12.9 0.0 2.1 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain HGTP_anticodon PF03129.20 gi|302347938|ref|YP_003815576.1| - 5.5e-22 77.7 0.0 1.3e-21 76.5 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|302347938|ref|YP_003815576.1| - 1.6e-05 25.0 0.0 7.4e-05 22.8 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ADK_lid PF05191.14 gi|302347938|ref|YP_003815576.1| - 0.018 15.0 0.4 0.085 12.8 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Rad50_zn_hook PF04423.14 gi|302347938|ref|YP_003815576.1| - 0.037 13.9 0.1 0.081 12.8 0.1 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif zinc_ribbon_2 PF13240.6 gi|302347938|ref|YP_003815576.1| - 0.079 12.7 0.7 6.7 6.6 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|302347938|ref|YP_003815576.1| - 0.11 12.7 0.8 2.4 8.4 0.1 2.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|302347938|ref|YP_003815576.1| - 0.14 12.1 1.2 1.2 9.1 0.0 2.4 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|302347938|ref|YP_003815576.1| - 0.19 11.9 1.9 3.9 7.7 1.9 2.5 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|302347938|ref|YP_003815576.1| - 0.35 10.7 4.8 3.3 7.5 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|302347938|ref|YP_003815576.1| - 0.77 9.5 3.8 11 5.8 0.1 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|302347938|ref|YP_003815576.1| - 2.1 8.3 5.1 8.3 6.4 0.3 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Arginase PF00491.21 gi|302347939|ref|YP_003815577.1| - 1e-71 241.7 0.0 1.1e-71 241.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family DegT_DnrJ_EryC1 PF01041.17 gi|302347939|ref|YP_003815577.1| - 0.21 10.9 0.1 0.29 10.4 0.1 1.1 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DNA_RNApol_7kD PF03604.13 gi|302347940|ref|YP_003815578.1| - 0.0019 17.9 5.2 0.004 16.8 5.2 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|302347940|ref|YP_003815578.1| - 0.0036 17.0 0.5 0.46 10.3 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|302347940|ref|YP_003815578.1| - 0.0037 17.3 0.1 0.004 17.1 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-FPG_IleRS PF06827.14 gi|302347940|ref|YP_003815578.1| - 0.0044 16.8 0.4 0.0082 16.0 0.4 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.7 gi|302347940|ref|YP_003815578.1| - 0.005 16.8 1.2 0.28 11.2 0.1 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|302347940|ref|YP_003815578.1| - 0.0098 15.8 0.2 0.014 15.3 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-Mss51 PF13824.6 gi|302347940|ref|YP_003815578.1| - 0.011 15.9 1.5 1.3 9.2 0.0 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-NADH-PPase PF09297.11 gi|302347940|ref|YP_003815578.1| - 0.012 15.3 2.1 0.033 13.8 2.1 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|302347940|ref|YP_003815578.1| - 0.023 14.7 0.5 0.057 13.5 0.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon TackOD1 PF18551.1 gi|302347940|ref|YP_003815578.1| - 0.024 14.3 0.2 0.029 14.1 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 TFIIS_C PF01096.18 gi|302347940|ref|YP_003815578.1| - 0.026 14.4 1.3 3.3 7.7 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.10 gi|302347940|ref|YP_003815578.1| - 0.052 13.3 2.1 1.8 8.4 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|302347940|ref|YP_003815578.1| - 0.054 13.2 3.4 3.1 7.6 0.2 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Cys_rich_KTR PF14205.6 gi|302347940|ref|YP_003815578.1| - 0.1 12.4 0.6 0.16 11.8 0.6 1.4 1 1 0 1 1 1 0 Cysteine-rich KTR zf-ribbon_3 PF13248.6 gi|302347940|ref|YP_003815578.1| - 0.13 11.7 2.7 0.15 11.5 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|302347940|ref|YP_003815578.1| - 0.16 11.5 2.2 0.66 9.6 0.2 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger zf_UBZ PF18439.1 gi|302347940|ref|YP_003815578.1| - 0.25 11.0 0.7 14 5.4 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_L37e PF01907.19 gi|302347940|ref|YP_003815578.1| - 0.4 10.9 4.1 1.5 9.1 4.0 1.8 1 1 0 1 1 1 0 Ribosomal protein L37e DUF2225 PF09986.9 gi|302347940|ref|YP_003815578.1| - 0.83 9.3 5.1 1 9.1 0.7 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zinc_ribbon_13 PF09855.9 gi|302347940|ref|YP_003815578.1| - 1.2 9.3 5.2 2.6 8.3 0.5 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zn-ribbon_14 PF16503.5 gi|302347940|ref|YP_003815578.1| - 4.7 6.8 6.7 6.8 6.3 0.9 2.2 2 0 0 2 2 2 0 Zinc-ribbon SUI1 PF01253.22 gi|302347941|ref|YP_003815579.1| - 1.7e-21 76.5 0.9 2.1e-21 76.2 0.9 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|302347941|ref|YP_003815579.1| - 0.0005 20.3 0.6 0.00071 19.8 0.6 1.3 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DBI_PRT PF02277.17 gi|302347942|ref|YP_003815580.1| - 8.5e-13 48.2 3.1 8.5e-13 48.2 3.1 1.4 2 0 0 2 2 2 1 Phosphoribosyltransferase CbiZ PF01955.18 gi|302347943|ref|YP_003815581.1| - 8.2e-36 123.9 0.6 1.1e-35 123.5 0.6 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase NTP_transf_3 PF12804.7 gi|302347944|ref|YP_003815582.1| - 3e-14 53.7 0.1 3.4e-14 53.5 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Aminotran_1_2 PF00155.21 gi|302347945|ref|YP_003815583.1| - 6e-34 117.8 0.0 7.2e-34 117.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CobS PF02654.15 gi|302347946|ref|YP_003815584.1| - 2.6e-37 129.0 17.3 3e-37 128.8 17.3 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.13 gi|302347947|ref|YP_003815585.1| - 1.2e-67 228.0 9.1 1.4e-67 227.8 9.1 1.1 1 0 0 1 1 1 1 CobD/Cbib protein Asn_synthase PF00733.21 gi|302347948|ref|YP_003815586.1| - 2e-18 67.2 0.0 3.8e-17 63.0 0.0 2.0 1 1 0 2 2 2 1 Asparagine synthase zf-ribbon_3 PF13248.6 gi|302347948|ref|YP_003815586.1| - 0.071 12.5 1.1 0.17 11.3 1.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|302347948|ref|YP_003815586.1| - 0.21 11.5 2.8 1.1 9.3 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|302347948|ref|YP_003815586.1| - 0.51 10.1 3.4 5.4 6.9 3.4 2.2 1 1 2 3 3 3 0 zinc-ribbon domain DUF72 PF01904.18 gi|302347949|ref|YP_003815587.1| - 9.9e-43 146.8 0.1 1.3e-42 146.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF2250 PF10007.9 gi|302347950|ref|YP_003815588.1| - 8.2e-48 160.5 4.0 1.9e-28 98.4 0.1 2.0 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|302347950|ref|YP_003815588.1| - 3.8e-05 23.5 0.3 0.026 14.4 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|302347950|ref|YP_003815588.1| - 0.00023 21.0 0.0 1 9.3 0.0 2.4 2 0 0 2 2 2 2 MarR family DUF4423 PF14394.6 gi|302347950|ref|YP_003815588.1| - 0.0011 18.7 0.0 0.69 9.6 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|302347950|ref|YP_003815588.1| - 0.0014 18.5 0.0 0.69 9.8 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|302347950|ref|YP_003815588.1| - 0.046 13.6 0.3 13 5.8 0.0 3.0 4 0 0 4 4 4 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|302347950|ref|YP_003815588.1| - 0.098 12.6 0.8 19 5.3 0.1 3.0 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family DMRL_synthase PF00885.19 gi|302347951|ref|YP_003815589.1| - 7.2e-11 42.1 0.0 9.3e-11 41.7 0.0 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DHBP_synthase PF00926.19 gi|302347952|ref|YP_003815590.1| - 2.7e-49 167.3 0.0 3.2e-49 167.1 0.0 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase SpoIIM PF01944.17 gi|302347954|ref|YP_003815592.1| - 9.7e-13 48.4 23.2 3.7e-12 46.5 23.3 1.7 1 1 0 1 1 1 1 Stage II sporulation protein M DUF2192 PF09958.9 gi|302347955|ref|YP_003815593.1| - 6.8e-72 241.7 0.0 7.6e-72 241.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Acyl-CoA_dh_1 PF00441.24 gi|302347956|ref|YP_003815594.1| - 2.9e-47 160.6 2.6 4.9e-47 159.9 2.6 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|302347956|ref|YP_003815594.1| - 2.8e-34 118.2 0.8 6.9e-34 116.9 0.8 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|302347956|ref|YP_003815594.1| - 6.7e-24 83.9 0.0 1.3e-23 83.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|302347956|ref|YP_003815594.1| - 1.7e-18 67.2 1.0 3e-18 66.4 1.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|302347956|ref|YP_003815594.1| - 0.0009 19.0 0.1 0.003 17.2 0.1 1.8 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Acetyltransf_CG PF14542.6 gi|302347956|ref|YP_003815594.1| - 0.018 15.1 1.2 4.4 7.5 0.1 2.5 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase AA_permease_2 PF13520.6 gi|302347957|ref|YP_003815595.1| - 2.2e-32 112.5 59.9 8.4e-32 110.5 46.9 2.1 2 0 0 2 2 2 2 Amino acid permease AA_permease PF00324.21 gi|302347957|ref|YP_003815595.1| - 3.2e-23 82.1 34.5 3.2e-23 82.1 34.5 2.3 2 0 0 2 2 2 1 Amino acid permease EamA PF00892.20 gi|302347958|ref|YP_003815596.1| - 1.8e-22 80.0 38.8 1.7e-11 44.5 19.9 2.2 2 0 0 2 2 2 2 EamA-like transporter family DUF2286 PF10051.9 gi|302347959|ref|YP_003815597.1| - 2.7e-51 173.0 0.2 3.2e-51 172.7 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) DUF4768 PF15989.5 gi|302347959|ref|YP_003815597.1| - 0.11 12.5 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4768) GH115_C PF17829.1 gi|302347959|ref|YP_003815597.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Gylcosyl hydrolase family 115 C-terminal domain MarC PF01914.17 gi|302347960|ref|YP_003815598.1| - 4.8e-30 104.5 11.0 6e-30 104.2 11.0 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein DUF2070 PF09843.9 gi|302347960|ref|YP_003815598.1| - 0.75 8.0 11.7 0.91 7.7 11.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF3687 PF12459.8 gi|302347960|ref|YP_003815598.1| - 0.92 9.1 7.7 0.19 11.3 1.4 2.6 2 0 0 2 2 2 0 D-Ala-teichoic acid biosynthesis protein IBV_3C PF03620.13 gi|302347960|ref|YP_003815598.1| - 2 9.0 5.8 3.1 8.3 1.0 2.5 2 1 0 2 2 2 0 IBV 3C protein Phage_holin_2_2 PF10746.9 gi|302347960|ref|YP_003815598.1| - 2.1 8.1 4.2 5.8 6.6 0.5 2.3 2 0 0 2 2 2 0 Phage holin T7 family, holin superfamily II Usp PF00582.26 gi|302347961|ref|YP_003815599.1| - 5.1e-34 117.8 0.1 5.7e-34 117.6 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family MFS_1 PF07690.16 gi|302347962|ref|YP_003815600.1| - 3.5e-21 75.5 65.6 3e-12 46.2 29.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|302347962|ref|YP_003815600.1| - 1.2e-08 34.2 19.5 1.2e-08 34.2 19.5 2.7 2 1 1 3 3 3 2 MFS_1 like family MFS_2 PF13347.6 gi|302347962|ref|YP_003815600.1| - 0.092 11.3 37.4 0.39 9.2 37.4 2.0 1 1 0 1 1 1 0 MFS/sugar transport protein NTP_transferase PF00483.23 gi|302347963|ref|YP_003815601.1| - 2.6e-24 86.2 0.0 3e-24 86.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|302347963|ref|YP_003815601.1| - 3.6e-11 43.7 0.0 5e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF126 PF01989.16 gi|302347964|ref|YP_003815602.1| - 1.5e-25 88.7 0.2 2.3e-25 88.2 0.2 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain DUF521 PF04412.13 gi|302347965|ref|YP_003815603.1| - 3.8e-122 407.9 0.0 4.2e-122 407.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CoA_binding_2 PF13380.6 gi|302347965|ref|YP_003815603.1| - 0.015 15.7 0.1 0.24 11.9 0.0 2.6 2 1 0 2 2 2 0 CoA binding domain DUF871 PF05913.11 gi|302347965|ref|YP_003815603.1| - 0.17 11.0 0.0 0.23 10.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF871) Q_salvage PF10343.9 gi|302347966|ref|YP_003815604.1| - 0.0038 16.9 0.0 0.0064 16.1 0.0 1.3 1 0 0 1 1 1 1 Potential Queuosine, Q, salvage protein family AGOG PF09171.10 gi|302347966|ref|YP_003815604.1| - 0.028 13.8 0.0 0.045 13.1 0.0 1.2 1 0 0 1 1 1 0 N-glycosylase/DNA lyase SNARE_assoc PF09335.11 gi|302347969|ref|YP_003815607.1| - 6.9e-05 23.3 7.2 6.9e-05 23.3 7.2 2.2 2 1 0 2 2 2 1 SNARE associated Golgi protein LapA_dom PF06305.11 gi|302347969|ref|YP_003815607.1| - 5.8 6.8 6.4 1.7 8.5 1.1 2.6 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain EF1_GNE PF00736.19 gi|302347970|ref|YP_003815608.1| - 1.2e-15 57.5 0.0 1.3e-15 57.3 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|302347971|ref|YP_003815609.1| - 9.2e-16 57.5 10.9 1.4e-13 50.5 3.7 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.7 gi|302347971|ref|YP_003815609.1| - 1.5e-05 24.9 21.2 0.00066 19.7 12.3 2.3 1 1 1 2 2 2 2 Double zinc ribbon zf-RING_7 PF02591.15 gi|302347971|ref|YP_003815609.1| - 3.4e-05 23.9 8.5 1.1 9.5 0.1 3.3 3 0 0 3 3 3 2 C4-type zinc ribbon domain DUF35_N PF12172.8 gi|302347971|ref|YP_003815609.1| - 0.00046 20.0 12.9 0.013 15.3 1.3 3.8 2 1 1 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|302347971|ref|YP_003815609.1| - 0.0019 17.6 15.4 0.05 13.0 0.2 3.8 4 0 0 4 4 4 2 zinc-ribbon domain zf-C2HC5 PF06221.13 gi|302347971|ref|YP_003815609.1| - 0.0022 17.9 10.0 0.0056 16.6 3.6 2.3 1 1 1 2 2 2 2 Putative zinc finger motif, C2HC5-type Nudix_N_2 PF14803.6 gi|302347971|ref|YP_003815609.1| - 0.0052 16.7 11.7 2.8 7.9 0.1 3.5 2 1 0 2 2 2 1 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|302347971|ref|YP_003815609.1| - 0.0053 16.4 20.4 0.019 14.7 5.1 3.7 2 2 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|302347971|ref|YP_003815609.1| - 0.012 15.6 10.6 0.038 14.0 0.4 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|302347971|ref|YP_003815609.1| - 0.013 15.4 10.7 0.034 14.1 0.8 2.3 1 1 0 2 2 2 0 Putative transposase DNA-binding domain DUF1272 PF06906.11 gi|302347971|ref|YP_003815609.1| - 0.017 15.2 10.2 1.6 8.9 10.2 2.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) ADK_lid PF05191.14 gi|302347971|ref|YP_003815609.1| - 0.023 14.7 2.9 0.023 14.7 2.9 2.9 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-UBP PF02148.19 gi|302347971|ref|YP_003815609.1| - 0.024 15.0 5.2 0.22 11.9 0.3 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-CHY PF05495.12 gi|302347971|ref|YP_003815609.1| - 0.024 15.1 8.7 0.29 11.7 8.7 2.0 1 1 0 1 1 1 0 CHY zinc finger C1_2 PF03107.16 gi|302347971|ref|YP_003815609.1| - 0.027 14.8 9.0 0.31 11.4 2.1 2.1 1 1 1 2 2 2 0 C1 domain DUF2072 PF09845.9 gi|302347971|ref|YP_003815609.1| - 0.035 14.3 1.4 0.035 14.3 1.4 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein zinc_ribbon_10 PF10058.9 gi|302347971|ref|YP_003815609.1| - 0.039 13.7 17.6 1.2 9.0 0.4 3.8 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_15 PF17032.5 gi|302347971|ref|YP_003815609.1| - 0.044 14.5 0.2 0.044 14.5 0.2 2.3 2 1 0 2 2 2 0 zinc-ribbon family DUF2321 PF10083.9 gi|302347971|ref|YP_003815609.1| - 0.05 13.2 4.6 0.046 13.4 3.2 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-MYND PF01753.18 gi|302347971|ref|YP_003815609.1| - 0.051 13.7 11.5 0.85 9.8 1.1 2.1 2 0 0 2 2 2 0 MYND finger TF_Zn_Ribbon PF08271.12 gi|302347971|ref|YP_003815609.1| - 0.079 12.5 15.3 1.3 8.6 0.8 3.4 3 1 1 4 4 4 0 TFIIB zinc-binding zf-H2C2_2 PF13465.6 gi|302347971|ref|YP_003815609.1| - 0.084 13.3 0.5 0.084 13.3 0.5 3.6 1 1 3 4 4 4 0 Zinc-finger double domain PolC_DP2 PF03833.13 gi|302347971|ref|YP_003815609.1| - 0.1 10.5 2.7 0.098 10.5 2.7 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-RING_9 PF13901.6 gi|302347971|ref|YP_003815609.1| - 0.12 12.4 5.3 0.14 12.1 5.3 1.1 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon HscB_4_cys PF18256.1 gi|302347971|ref|YP_003815609.1| - 0.14 12.0 1.1 0.14 12.0 1.1 3.2 2 1 0 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif Zn_ribbon_SprT PF17283.2 gi|302347971|ref|YP_003815609.1| - 0.14 12.1 18.8 2.7 8.0 0.4 3.4 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf-ACC PF17848.1 gi|302347971|ref|YP_003815609.1| - 0.14 12.2 12.0 4.9 7.3 0.1 4.0 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain tRNA-synt_1f PF01921.18 gi|302347971|ref|YP_003815609.1| - 0.19 10.6 2.0 0.27 10.1 0.3 1.7 1 1 1 2 2 2 0 tRNA synthetases class I (K) CK_II_beta PF01214.18 gi|302347971|ref|YP_003815609.1| - 0.24 11.2 2.3 0.14 11.9 1.2 1.3 1 1 0 1 1 1 0 Casein kinase II regulatory subunit zf-B_box PF00643.24 gi|302347971|ref|YP_003815609.1| - 0.25 11.5 10.5 0.73 10.0 5.3 2.7 1 1 1 2 2 2 0 B-box zinc finger MCM_OB PF17207.3 gi|302347971|ref|YP_003815609.1| - 0.27 11.1 6.6 0.58 10.0 6.6 1.7 1 1 0 1 1 1 0 MCM OB domain CoiA PF06054.11 gi|302347971|ref|YP_003815609.1| - 0.45 9.6 1.3 0.48 9.5 1.3 1.1 1 0 0 1 1 1 0 Competence protein CoiA-like family Sgf11 PF08209.11 gi|302347971|ref|YP_003815609.1| - 0.46 10.1 16.7 0.88 9.2 0.4 4.0 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) Rubredoxin_2 PF18073.1 gi|302347971|ref|YP_003815609.1| - 0.46 10.3 19.5 0.52 10.1 0.3 4.0 3 1 0 3 3 3 0 Rubredoxin metal binding domain zf-Mss51 PF13824.6 gi|302347971|ref|YP_003815609.1| - 0.53 10.4 12.8 12 6.1 6.2 2.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 IBR PF01485.21 gi|302347971|ref|YP_003815609.1| - 0.72 10.1 10.2 9.4 6.5 10.2 2.1 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain zinc-ribbons_6 PF07191.12 gi|302347971|ref|YP_003815609.1| - 0.72 9.9 9.1 10 6.2 9.1 2.2 1 1 0 1 1 1 0 zinc-ribbons NinF PF05810.12 gi|302347971|ref|YP_003815609.1| - 0.72 9.8 5.2 2.4 8.1 0.2 2.6 1 1 1 2 2 2 0 NinF protein RNA_POL_M_15KD PF02150.16 gi|302347971|ref|YP_003815609.1| - 0.82 9.6 8.2 1.8 8.5 5.7 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit NOB1_Zn_bind PF08772.11 gi|302347971|ref|YP_003815609.1| - 1.1 9.5 11.5 0.16 12.1 2.6 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Spt4 PF06093.13 gi|302347971|ref|YP_003815609.1| - 1.2 9.2 8.7 0.82 9.8 3.4 2.1 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger zf-LITAF-like PF10601.9 gi|302347971|ref|YP_003815609.1| - 1.3 9.4 14.0 0.35 11.2 1.5 3.5 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|302347971|ref|YP_003815609.1| - 1.4 9.1 17.1 0.56 10.4 2.5 3.4 1 1 2 3 3 3 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|302347971|ref|YP_003815609.1| - 1.4 8.7 13.0 21 4.9 3.4 3.9 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-AN1 PF01428.16 gi|302347971|ref|YP_003815609.1| - 1.4 9.1 12.9 17 5.7 2.5 2.9 1 1 2 3 3 3 0 AN1-like Zinc finger YhfH PF14149.6 gi|302347971|ref|YP_003815609.1| - 1.9 8.6 11.9 2.9 7.9 2.4 3.6 2 1 2 4 4 4 0 YhfH-like protein HalOD2 PF18547.1 gi|302347971|ref|YP_003815609.1| - 2.2 8.3 15.2 12 5.9 0.1 4.0 2 1 2 4 4 4 0 Halobacterial output domain 2 zinc_ribbon_4 PF13717.6 gi|302347971|ref|YP_003815609.1| - 2.3 8.2 18.1 5 7.1 0.2 4.0 2 1 1 3 3 3 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|302347971|ref|YP_003815609.1| - 3.1 8.4 14.9 4.6 7.9 0.2 3.9 4 0 0 4 4 4 0 Zinc finger, C2H2 type zf-TFIIB PF13453.6 gi|302347971|ref|YP_003815609.1| - 4.8 6.6 15.6 53 3.3 0.8 3.7 2 1 0 2 2 2 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|302347971|ref|YP_003815609.1| - 5.3 6.7 15.7 8.4 6.1 0.2 4.0 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-C2H2_3 PF13878.6 gi|302347971|ref|YP_003815609.1| - 6.5 6.7 10.0 10 6.1 1.0 3.6 2 1 2 4 4 4 0 zinc-finger of acetyl-transferase ESCO DNA_RNApol_7kD PF03604.13 gi|302347971|ref|YP_003815609.1| - 6.6 6.5 16.3 4.4 7.1 5.1 3.6 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf_C2H2_10 PF18414.1 gi|302347971|ref|YP_003815609.1| - 7.2 6.2 9.7 15 5.2 0.3 3.4 3 0 0 3 3 3 0 C2H2 type zinc-finger Auto_anti-p27 PF06677.12 gi|302347971|ref|YP_003815609.1| - 8.4 6.7 13.7 0.72 10.1 1.8 2.8 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) FbpA PF05833.11 gi|302347972|ref|YP_003815610.1| - 2.4e-36 125.5 0.0 3.5e-36 124.9 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|302347972|ref|YP_003815610.1| - 7.9e-23 81.2 0.0 1.6e-22 80.2 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|302347972|ref|YP_003815610.1| - 0.00079 19.6 0.0 0.0024 18.0 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain TruB_C PF09142.11 gi|302347972|ref|YP_003815610.1| - 0.0022 17.7 0.1 0.0086 15.8 0.1 2.0 1 0 0 1 1 1 1 tRNA Pseudouridine synthase II, C terminal NSP2-B_epitope PF14757.6 gi|302347972|ref|YP_003815610.1| - 0.13 12.0 0.1 0.23 11.1 0.1 1.3 1 0 0 1 1 1 0 Immunogenic region of nsp2 protein of arterivirus polyprotein APG6_N PF17675.1 gi|302347972|ref|YP_003815610.1| - 0.53 10.8 12.4 2.3 8.7 0.7 2.4 2 0 0 2 2 2 0 Apg6 coiled-coil region ParE_toxin PF05016.15 gi|302347972|ref|YP_003815610.1| - 8.8 7.0 8.4 5.9 7.6 1.2 3.7 4 0 0 4 4 4 0 ParE toxin of type II toxin-antitoxin system, parDE Metallophos PF00149.28 gi|302347974|ref|YP_003815612.1| - 2.6e-08 34.6 0.0 3.3e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase THUMP PF02926.17 gi|302347975|ref|YP_003815613.1| - 6.4e-12 45.8 0.0 1.1e-11 45.0 0.0 1.5 1 0 0 1 1 1 1 THUMP domain CitMHS PF03600.16 gi|302347976|ref|YP_003815614.1| - 1.6e-27 96.5 37.7 1.6e-27 96.5 37.7 1.9 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|302347976|ref|YP_003815614.1| - 9e-08 31.6 11.6 9e-08 31.6 11.6 2.2 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region ECH_1 PF00378.20 gi|302347977|ref|YP_003815615.1| - 1.3e-47 162.3 0.0 1.7e-47 161.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|302347977|ref|YP_003815615.1| - 7.2e-36 124.3 0.0 8.2e-36 124.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DUF3369 PF11849.8 gi|302347977|ref|YP_003815615.1| - 0.09 13.0 0.0 0.23 11.6 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3369) KOW PF00467.29 gi|302347978|ref|YP_003815616.1| - 0.00084 19.2 1.7 0.0011 18.9 0.4 1.8 2 0 0 2 2 2 1 KOW motif Ribosomal_L14e PF01929.17 gi|302347978|ref|YP_003815616.1| - 0.035 14.6 0.0 0.049 14.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L14 MoaE PF02391.17 gi|302347979|ref|YP_003815617.1| - 8.3e-27 93.7 0.0 2.2e-26 92.3 0.0 1.7 1 1 1 2 2 2 1 MoaE protein ThiS PF02597.20 gi|302347979|ref|YP_003815617.1| - 7.7e-09 36.1 0.3 2.8e-08 34.3 0.0 2.1 3 0 0 3 3 3 1 ThiS family Ribosomal_L24e PF01246.20 gi|302347980|ref|YP_003815618.1| - 0.018 15.3 0.0 0.025 14.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L24e zf-FLZ PF04570.14 gi|302347980|ref|YP_003815618.1| - 0.042 13.3 0.1 0.066 12.7 0.1 1.3 1 0 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 DEAD PF00270.29 gi|302347981|ref|YP_003815619.1| - 2.6e-29 102.2 0.0 4.9e-29 101.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|302347981|ref|YP_003815619.1| - 1.3e-14 54.5 0.0 7.9e-14 51.9 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|302347981|ref|YP_003815619.1| - 2.6e-07 30.8 0.0 5e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD_assoc PF08494.11 gi|302347981|ref|YP_003815619.1| - 5.4e-05 23.1 0.0 0.13 12.0 0.0 2.4 1 1 1 2 2 2 2 DEAD/H associated AAA_19 PF13245.6 gi|302347981|ref|YP_003815619.1| - 0.001 19.4 0.0 0.0024 18.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain SNF2_N PF00176.23 gi|302347981|ref|YP_003815619.1| - 0.0073 15.1 0.0 0.012 14.3 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain GerE PF00196.19 gi|302347981|ref|YP_003815619.1| - 0.01 15.3 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family UvrD-helicase PF00580.21 gi|302347981|ref|YP_003815619.1| - 0.029 13.9 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain HTH_11 PF08279.12 gi|302347981|ref|YP_003815619.1| - 0.042 13.8 0.1 0.17 11.8 0.1 2.1 1 0 0 1 1 1 0 HTH domain Sigma70_r3 PF04539.16 gi|302347981|ref|YP_003815619.1| - 0.094 12.8 0.6 1.2 9.2 0.1 2.7 2 0 0 2 2 2 0 Sigma-70 region 3 AAA_11 PF13086.6 gi|302347981|ref|YP_003815619.1| - 0.12 12.2 0.0 0.35 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain IF2_N PF04760.15 gi|302347981|ref|YP_003815619.1| - 2.5 8.0 4.0 3.4 7.5 1.2 2.8 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region DUF1700 PF08006.11 gi|302347982|ref|YP_003815620.1| - 0.21 11.1 7.7 0.29 10.6 7.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) RHH_1 PF01402.21 gi|302347983|ref|YP_003815621.1| - 3.8e-10 39.3 0.2 5.3e-10 38.9 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|302347983|ref|YP_003815621.1| - 0.00043 20.4 0.0 0.00052 20.2 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|302347983|ref|YP_003815621.1| - 0.021 15.2 0.0 0.027 14.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH GIT1_C PF12205.8 gi|302347983|ref|YP_003815621.1| - 0.039 14.1 0.0 0.041 14.0 0.0 1.1 1 0 0 1 1 1 0 G protein-coupled receptor kinase-interacting protein 1 C term VapB_antitoxin PF09957.9 gi|302347983|ref|YP_003815621.1| - 0.075 13.0 1.0 0.37 10.7 1.0 2.0 1 1 1 2 2 2 0 Bacterial antitoxin of type II TA system, VapB GHMP_kinases_N PF00288.26 gi|302347984|ref|YP_003815622.1| - 0.099 12.9 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 GHMP kinases N terminal domain FKBP_C PF00254.28 gi|302347985|ref|YP_003815623.1| - 1.6e-10 41.2 0.0 3.4e-10 40.1 0.0 1.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase BRX_N PF13713.6 gi|302347985|ref|YP_003815623.1| - 0.012 15.3 0.0 0.038 13.8 0.0 1.9 2 0 0 2 2 2 0 Transcription factor BRX N-terminal domain UPF0113 PF03657.13 gi|302347986|ref|YP_003815624.1| - 7.6e-18 64.6 0.0 1.1e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 UPF0113 PUA domain UPF0113_N PF17833.1 gi|302347986|ref|YP_003815624.1| - 0.17 12.5 0.0 0.51 10.9 0.0 1.9 2 0 0 2 2 2 0 UPF0113 Pre-PUA domain Methyltr_RsmB-F PF01189.17 gi|302347987|ref|YP_003815625.1| - 1.6e-44 152.0 0.0 2e-44 151.6 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|302347987|ref|YP_003815625.1| - 9.4e-18 64.5 0.0 2.4e-17 63.2 0.0 1.7 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|302347987|ref|YP_003815625.1| - 0.0064 16.3 0.0 0.013 15.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|302347987|ref|YP_003815625.1| - 0.18 11.9 0.0 0.38 10.8 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase CTP_transf_like PF01467.26 gi|302347988|ref|YP_003815626.1| - 6.7e-13 49.1 0.0 9.8e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase-like Adenosine_kin PF04008.14 gi|302347989|ref|YP_003815627.1| - 4.2e-73 244.2 0.1 4.8e-73 244.0 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Toxin_25 PF08095.11 gi|302347989|ref|YP_003815627.1| - 0.38 10.8 0.2 0.38 10.8 0.2 1.9 2 0 0 2 2 2 0 Hefutoxin family AAA_18 PF13238.6 gi|302347990|ref|YP_003815628.1| - 8.3e-13 49.0 0.0 1.3e-12 48.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|302347990|ref|YP_003815628.1| - 4.7e-12 46.5 0.1 7.7e-12 45.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|302347990|ref|YP_003815628.1| - 2.4e-05 24.5 0.1 5e-05 23.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|302347990|ref|YP_003815628.1| - 0.00028 20.5 0.1 0.0034 17.0 0.1 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|302347990|ref|YP_003815628.1| - 0.0019 18.2 0.2 0.0029 17.5 0.2 1.5 1 1 0 1 1 1 1 NTPase ADK PF00406.22 gi|302347990|ref|YP_003815628.1| - 0.0022 18.1 0.0 0.004 17.3 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase APS_kinase PF01583.20 gi|302347990|ref|YP_003815628.1| - 0.0027 17.6 0.0 0.0065 16.4 0.0 1.7 2 1 0 2 2 2 1 Adenylylsulphate kinase KTI12 PF08433.10 gi|302347990|ref|YP_003815628.1| - 0.0028 17.1 0.0 0.0041 16.6 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.6 gi|302347990|ref|YP_003815628.1| - 0.0034 17.8 0.1 0.0055 17.1 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.17 gi|302347990|ref|YP_003815628.1| - 0.0059 16.7 0.0 0.01 15.9 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain Cytidylate_kin PF02224.18 gi|302347990|ref|YP_003815628.1| - 0.01 15.6 0.1 0.053 13.2 0.0 1.9 2 1 0 2 2 2 0 Cytidylate kinase MeaB PF03308.16 gi|302347990|ref|YP_003815628.1| - 0.011 14.7 0.2 0.13 11.2 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CoaE PF01121.20 gi|302347990|ref|YP_003815628.1| - 0.015 14.9 0.0 0.1 12.2 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA PF00004.29 gi|302347990|ref|YP_003815628.1| - 0.032 14.6 0.1 0.062 13.7 0.0 1.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|302347990|ref|YP_003815628.1| - 0.04 13.1 0.4 0.45 9.7 0.1 2.2 1 1 1 2 2 2 0 NB-ARC domain AAA_22 PF13401.6 gi|302347990|ref|YP_003815628.1| - 0.1 12.8 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|302347990|ref|YP_003815628.1| - 0.11 13.1 0.0 0.11 13.0 0.0 1.3 1 1 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|302347990|ref|YP_003815628.1| - 0.13 12.0 0.4 0.68 9.6 0.4 2.2 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|302347990|ref|YP_003815628.1| - 0.2 12.1 0.0 0.34 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase RNA_binding PF01877.17 gi|302347991|ref|YP_003815629.1| - 2.6e-20 72.8 0.1 3.1e-20 72.6 0.1 1.1 1 0 0 1 1 1 1 RNA binding DUF3654 PF12376.8 gi|302347991|ref|YP_003815629.1| - 0.056 13.6 0.0 0.074 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3654) EPO_TPO PF00758.18 gi|302347991|ref|YP_003815629.1| - 0.065 13.3 0.0 0.083 12.9 0.0 1.2 1 0 0 1 1 1 0 Erythropoietin/thrombopoietin SAC3_GANP PF03399.16 gi|302347991|ref|YP_003815629.1| - 0.11 11.9 0.2 0.14 11.5 0.2 1.1 1 0 0 1 1 1 0 SAC3/GANP family Lactamase_B_2 PF12706.7 gi|302347992|ref|YP_003815630.1| - 2.1e-15 56.8 0.0 2.6e-14 53.2 0.0 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|302347992|ref|YP_003815630.1| - 3.7e-11 43.4 0.0 7.6e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|302347992|ref|YP_003815630.1| - 0.023 14.4 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 tRNase Z endonuclease Lactamase_B_3 PF13483.6 gi|302347992|ref|YP_003815630.1| - 0.028 14.3 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain UPF0020 PF01170.18 gi|302347993|ref|YP_003815631.1| - 3.3e-23 82.4 0.0 2.4e-22 79.6 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|302347993|ref|YP_003815631.1| - 2.9e-09 37.4 0.0 9.2e-09 35.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|302347993|ref|YP_003815631.1| - 1.7e-08 35.0 0.1 6.3e-08 33.2 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|302347993|ref|YP_003815631.1| - 2e-08 34.1 0.0 3.2e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|302347993|ref|YP_003815631.1| - 4.1e-06 26.5 0.0 6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|302347993|ref|YP_003815631.1| - 0.00011 22.0 0.0 0.0002 21.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|302347993|ref|YP_003815631.1| - 0.00018 20.9 0.0 0.00035 20.0 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_N4_Mtase PF01555.18 gi|302347993|ref|YP_003815631.1| - 0.00076 19.3 0.0 0.16 11.6 0.0 2.3 2 0 0 2 2 2 2 DNA methylase PrmA PF06325.13 gi|302347993|ref|YP_003815631.1| - 0.0039 16.6 0.0 0.007 15.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) YtpI PF14007.6 gi|302347994|ref|YP_003815632.1| - 0.027 14.6 3.9 0.027 14.6 3.9 2.3 1 1 1 2 2 2 0 YtpI-like protein Goodbye PF17109.5 gi|302347994|ref|YP_003815632.1| - 0.28 11.6 0.6 0.4 11.1 0.6 1.2 1 0 0 1 1 1 0 fungal STAND N-terminal Goodbye domain DUF2892 PF11127.8 gi|302347994|ref|YP_003815632.1| - 8 6.6 12.9 1.9 8.6 8.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) Glycos_transf_2 PF00535.26 gi|302347995|ref|YP_003815633.1| - 1.3e-36 126.0 0.0 2.9e-36 124.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|302347995|ref|YP_003815633.1| - 7.8e-22 77.7 4.6 1.2e-21 77.1 4.6 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|302347995|ref|YP_003815633.1| - 6.3e-14 52.4 0.0 3.6e-13 50.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|302347995|ref|YP_003815633.1| - 0.00051 20.4 0.0 0.00084 19.7 0.0 1.6 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_2 PF10111.9 gi|302347995|ref|YP_003815633.1| - 0.0011 18.6 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|302347995|ref|YP_003815633.1| - 0.0074 15.8 0.0 0.016 14.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 21 NTP_transferase PF00483.23 gi|302347995|ref|YP_003815633.1| - 0.02 14.5 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Peripla_BP_6 PF13458.6 gi|302347995|ref|YP_003815633.1| - 0.058 13.0 0.0 0.65 9.6 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding protein Metallophos_2 PF12850.7 gi|302347996|ref|YP_003815634.1| - 1.7e-05 25.1 0.1 2.2e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|302347996|ref|YP_003815634.1| - 0.0033 17.9 1.8 0.012 16.1 2.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HAD PF12710.7 gi|302347996|ref|YP_003815634.1| - 0.1 13.0 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Aminotran_3 PF00202.21 gi|302347996|ref|YP_003815634.1| - 0.12 11.1 0.0 0.16 10.6 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-III TBP PF00352.21 gi|302347997|ref|YP_003815635.1| - 1.2e-57 191.8 0.7 1e-29 102.3 0.1 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|302347997|ref|YP_003815635.1| - 3.6e-07 30.2 0.0 0.006 16.7 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DNA_primase_S PF01896.19 gi|302347999|ref|YP_003815637.1| - 1e-08 35.4 0.0 5.5e-08 33.1 0.0 1.9 1 1 0 1 1 1 1 DNA primase small subunit PCNA_N PF00705.18 gi|302348000|ref|YP_003815638.1| - 1.3e-15 57.2 0.1 3e-13 49.6 0.0 2.1 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|302348000|ref|YP_003815638.1| - 9.4e-14 51.7 0.0 1.5e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|302348000|ref|YP_003815638.1| - 2.1e-05 23.7 0.0 0.0062 15.6 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|302348000|ref|YP_003815638.1| - 0.037 13.5 0.0 0.056 12.9 0.0 1.5 1 1 0 1 1 1 0 Rad9 Ribosomal_L44 PF00935.19 gi|302348001|ref|YP_003815639.1| - 1.5e-27 95.8 8.1 1.5e-27 95.8 8.1 1.4 2 0 0 2 2 2 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|302348001|ref|YP_003815639.1| - 0.063 13.7 1.1 0.063 13.7 1.1 2.8 2 1 1 3 3 3 0 Ribosomal protein L33 zf-ribbon_3 PF13248.6 gi|302348001|ref|YP_003815639.1| - 0.063 12.7 3.4 3.5 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|302348001|ref|YP_003815639.1| - 0.099 12.8 1.8 0.87 9.8 0.2 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_4 PF13717.6 gi|302348001|ref|YP_003815639.1| - 0.18 11.8 3.9 4.3 7.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Rpr2 PF04032.16 gi|302348001|ref|YP_003815639.1| - 0.45 10.8 3.8 1.2 9.5 3.8 1.7 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain CpXC PF14353.6 gi|302348001|ref|YP_003815639.1| - 0.46 10.6 2.7 10 6.2 0.2 2.2 1 1 0 2 2 2 0 CpXC protein zinc_ribbon_2 PF13240.6 gi|302348001|ref|YP_003815639.1| - 0.54 10.1 5.4 4.1 7.3 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nop10p PF04135.12 gi|302348002|ref|YP_003815640.1| - 7.8e-24 83.5 3.5 9.1e-24 83.3 3.5 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|302348002|ref|YP_003815640.1| - 0.0072 15.9 0.2 0.0084 15.7 0.2 1.2 1 0 0 1 1 1 1 RecR protein DUF35_N PF12172.8 gi|302348002|ref|YP_003815640.1| - 0.017 15.0 6.1 0.017 15.0 6.1 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_ribbon_SprT PF17283.2 gi|302348002|ref|YP_003815640.1| - 0.029 14.3 4.4 0.045 13.7 4.1 1.5 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Ribosomal_L32p PF01783.23 gi|302348002|ref|YP_003815640.1| - 0.076 13.3 2.5 0.14 12.4 2.4 1.5 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-ribbon_3 PF13248.6 gi|302348002|ref|YP_003815640.1| - 0.086 12.3 6.5 2.2 7.8 6.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|302348002|ref|YP_003815640.1| - 0.091 13.3 2.8 0.29 11.7 0.2 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain HypA PF01155.19 gi|302348002|ref|YP_003815640.1| - 0.11 12.5 0.3 0.15 12.1 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1258 PF06869.12 gi|302348002|ref|YP_003815640.1| - 0.14 11.6 0.1 0.18 11.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zf-NADH-PPase PF09297.11 gi|302348002|ref|YP_003815640.1| - 1.1 8.9 6.5 4.6 7.0 0.4 2.3 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|302348002|ref|YP_003815640.1| - 1.7 8.7 6.2 2.7 8.0 0.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|302348002|ref|YP_003815640.1| - 3.1 7.7 6.7 86 3.1 6.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|302348002|ref|YP_003815640.1| - 3.2 7.8 7.4 13 5.8 0.4 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type EIF_2_alpha PF07541.12 gi|302348003|ref|YP_003815641.1| - 1.2e-23 83.4 0.1 2.1e-23 82.6 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|302348003|ref|YP_003815641.1| - 2.8e-14 53.2 2.7 3e-14 53.1 0.8 1.9 2 0 0 2 2 2 1 S1 RNA binding domain T2SSF PF00482.23 gi|302348003|ref|YP_003815641.1| - 0.034 14.1 0.1 3.5 7.6 0.0 2.4 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F LmjF365940-deam PF14421.6 gi|302348003|ref|YP_003815641.1| - 0.13 11.9 2.5 12 5.5 0.0 2.2 1 1 0 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases MetJ PF01340.20 gi|302348003|ref|YP_003815641.1| - 0.3 11.1 0.1 0.3 11.1 0.1 2.3 2 1 0 2 2 2 0 Met Apo-repressor, MetJ HTH_23 PF13384.6 gi|302348004|ref|YP_003815642.1| - 3e-05 23.7 0.1 5.9e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|302348004|ref|YP_003815642.1| - 0.01 16.0 0.1 0.015 15.4 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|302348004|ref|YP_003815642.1| - 0.016 15.5 0.0 0.022 15.1 0.0 1.2 1 0 0 1 1 1 0 Transposase HTH_29 PF13551.6 gi|302348004|ref|YP_003815642.1| - 0.052 13.6 0.0 0.071 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF1870 PF08965.10 gi|302348005|ref|YP_003815643.1| - 0.12 12.4 0.1 0.17 11.9 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1870) AAA_17 PF13207.6 gi|302348006|ref|YP_003815644.1| - 9.6e-33 113.5 0.1 2.7e-32 112.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|302348006|ref|YP_003815644.1| - 1.1e-10 42.2 0.0 2.9e-10 40.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|302348006|ref|YP_003815644.1| - 9.3e-06 26.1 0.1 1.7e-05 25.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|302348006|ref|YP_003815644.1| - 2.8e-05 23.9 0.1 0.00048 19.9 0.1 2.3 1 1 0 1 1 1 1 Thymidylate kinase AAA_30 PF13604.6 gi|302348006|ref|YP_003815644.1| - 3.8e-05 23.5 0.0 0.00019 21.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|302348006|ref|YP_003815644.1| - 6.4e-05 22.1 0.5 0.00013 21.1 0.1 1.7 2 0 0 2 2 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|302348006|ref|YP_003815644.1| - 0.0002 21.6 0.0 0.00032 21.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|302348006|ref|YP_003815644.1| - 0.00022 21.2 0.1 0.00043 20.2 0.1 1.5 1 0 0 1 1 1 1 NTPase AAA_22 PF13401.6 gi|302348006|ref|YP_003815644.1| - 0.00029 21.1 0.0 0.00038 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|302348006|ref|YP_003815644.1| - 0.00053 19.5 0.0 0.00093 18.7 0.0 1.4 1 1 0 1 1 1 1 Chromatin associated protein KTI12 ATP_bind_1 PF03029.17 gi|302348006|ref|YP_003815644.1| - 0.0008 19.3 0.0 0.0026 17.6 0.0 1.8 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|302348006|ref|YP_003815644.1| - 0.00096 18.8 0.1 0.0019 17.9 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|302348006|ref|YP_003815644.1| - 0.0011 19.1 0.5 0.009 16.2 0.5 2.1 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|302348006|ref|YP_003815644.1| - 0.0014 18.3 0.3 0.0022 17.6 0.3 1.7 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CLP1_P PF16575.5 gi|302348006|ref|YP_003815644.1| - 0.0016 18.3 0.0 0.09 12.6 0.0 2.7 2 1 0 3 3 3 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|302348006|ref|YP_003815644.1| - 0.0029 17.7 0.0 0.0036 17.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_14 PF13173.6 gi|302348006|ref|YP_003815644.1| - 0.0053 16.8 1.1 0.078 13.0 1.2 2.2 1 1 0 1 1 1 1 AAA domain DUF1611 PF07755.11 gi|302348006|ref|YP_003815644.1| - 0.0071 15.6 0.3 0.62 9.3 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain AAA_19 PF13245.6 gi|302348006|ref|YP_003815644.1| - 0.0073 16.6 0.1 0.025 14.9 0.1 1.8 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|302348006|ref|YP_003815644.1| - 0.0082 15.4 0.0 0.0099 15.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) CPT PF07931.12 gi|302348006|ref|YP_003815644.1| - 0.0092 15.8 0.0 0.019 14.8 0.0 1.4 1 1 1 2 2 2 1 Chloramphenicol phosphotransferase-like protein NACHT PF05729.12 gi|302348006|ref|YP_003815644.1| - 0.013 15.4 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain APS_kinase PF01583.20 gi|302348006|ref|YP_003815644.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase DnaB_C PF03796.15 gi|302348006|ref|YP_003815644.1| - 0.015 14.6 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Viral_helicase1 PF01443.18 gi|302348006|ref|YP_003815644.1| - 0.017 14.9 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA PF00004.29 gi|302348006|ref|YP_003815644.1| - 0.017 15.5 0.0 0.039 14.4 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|302348006|ref|YP_003815644.1| - 0.031 13.6 0.0 0.068 12.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|302348006|ref|YP_003815644.1| - 0.033 13.9 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|302348006|ref|YP_003815644.1| - 0.041 13.8 0.0 0.054 13.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain 5_3_exonuc PF01367.20 gi|302348006|ref|YP_003815644.1| - 0.054 14.1 0.0 0.13 12.9 0.0 1.6 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold dNK PF01712.19 gi|302348006|ref|YP_003815644.1| - 0.066 13.1 0.0 0.87 9.4 0.1 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase ABC_tran PF00005.27 gi|302348006|ref|YP_003815644.1| - 0.09 13.3 0.2 0.16 12.5 0.2 1.8 1 1 0 1 1 1 0 ABC transporter Herpes_Helicase PF02689.14 gi|302348006|ref|YP_003815644.1| - 0.11 10.5 0.0 0.14 10.0 0.0 1.1 1 0 0 1 1 1 0 Helicase ATPase_2 PF01637.18 gi|302348006|ref|YP_003815644.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MobB PF03205.14 gi|302348006|ref|YP_003815644.1| - 0.12 12.3 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B 6PF2K PF01591.18 gi|302348006|ref|YP_003815644.1| - 0.13 11.6 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 6-phosphofructo-2-kinase SecY PF00344.20 gi|302348007|ref|YP_003815645.1| - 1.5e-56 192.0 17.7 1.8e-56 191.6 17.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|302348007|ref|YP_003815645.1| - 5.7e-10 38.9 0.2 1.7e-09 37.3 0.2 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p Thioredoxin_3 PF13192.6 gi|302348009|ref|YP_003815647.1| - 7.6e-25 86.8 0.4 4.9e-14 52.1 0.1 2.5 2 1 0 2 2 2 2 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|302348009|ref|YP_003815647.1| - 0.0026 17.9 4.2 5.7 7.1 0.0 3.8 2 2 1 4 4 4 2 Thioredoxin Thioredoxin PF00085.20 gi|302348009|ref|YP_003815647.1| - 0.0035 17.3 0.2 0.028 14.4 0.0 2.2 2 1 0 2 2 2 1 Thioredoxin Glutaredoxin PF00462.24 gi|302348009|ref|YP_003815647.1| - 0.019 15.2 6.2 0.1 12.9 0.1 3.9 2 2 1 3 3 3 0 Glutaredoxin TraF PF13728.6 gi|302348009|ref|YP_003815647.1| - 0.1 12.4 0.0 1.7 8.5 0.0 2.4 2 1 0 2 2 2 0 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|302348009|ref|YP_003815647.1| - 0.39 11.2 3.2 4.1 7.9 0.6 3.0 2 2 0 2 2 2 0 Thioredoxin-like domain HTH_3 PF01381.22 gi|302348010|ref|YP_003815648.1| - 0.00047 20.2 0.0 0.001 19.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|302348010|ref|YP_003815648.1| - 0.0065 16.2 0.0 0.26 11.1 0.0 2.6 3 0 0 3 3 3 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|302348010|ref|YP_003815648.1| - 0.027 14.2 0.7 0.058 13.1 0.0 1.9 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_17 PF12728.7 gi|302348010|ref|YP_003815648.1| - 0.043 14.0 0.0 1.1 9.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 gi|302348010|ref|YP_003815648.1| - 0.05 13.3 0.1 0.15 11.7 0.0 1.8 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0175) Cas_Csn2 PF09711.10 gi|302348010|ref|YP_003815648.1| - 0.1 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csn2) HTH_31 PF13560.6 gi|302348010|ref|YP_003815648.1| - 0.14 12.5 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PTCB-BRCT PF12738.7 gi|302348010|ref|YP_003815648.1| - 0.15 12.0 0.0 0.48 10.4 0.0 1.9 2 0 0 2 2 2 0 twin BRCT domain HTH_1 PF00126.27 gi|302348010|ref|YP_003815648.1| - 0.17 11.9 0.0 0.55 10.2 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_3 PF01381.22 gi|302348011|ref|YP_003815649.1| - 3e-10 40.0 0.6 1.2e-09 38.1 0.3 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|302348011|ref|YP_003815649.1| - 4.8e-07 29.7 0.3 1.3e-06 28.3 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|302348011|ref|YP_003815649.1| - 5.2e-07 29.9 0.0 1.2e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain NTPase_1 PF03266.15 gi|302348012|ref|YP_003815650.1| - 4.2e-41 140.6 0.0 5.1e-41 140.4 0.0 1.0 1 0 0 1 1 1 1 NTPase IstB_IS21 PF01695.17 gi|302348012|ref|YP_003815650.1| - 5.7e-06 26.2 0.1 0.0026 17.5 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.12 gi|302348012|ref|YP_003815650.1| - 1.1e-05 25.4 0.4 0.00014 21.9 0.1 2.1 2 0 0 2 2 2 1 NACHT domain AAA PF00004.29 gi|302348012|ref|YP_003815650.1| - 1.6e-05 25.4 0.0 3.2e-05 24.3 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|302348012|ref|YP_003815650.1| - 2.1e-05 24.8 0.3 0.00015 22.0 0.3 2.1 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|302348012|ref|YP_003815650.1| - 0.00015 21.5 0.2 0.0037 17.0 0.1 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain NB-ARC PF00931.22 gi|302348012|ref|YP_003815650.1| - 0.00032 20.0 0.1 0.00046 19.5 0.1 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.6 gi|302348012|ref|YP_003815650.1| - 0.00034 21.0 0.1 0.00094 19.6 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|302348012|ref|YP_003815650.1| - 0.0013 19.1 0.8 0.037 14.4 0.4 2.2 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|302348012|ref|YP_003815650.1| - 0.0021 18.0 0.1 0.41 10.7 0.1 2.5 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|302348012|ref|YP_003815650.1| - 0.0021 18.6 0.1 0.0041 17.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|302348012|ref|YP_003815650.1| - 0.0034 17.3 0.1 0.097 12.6 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase DnaB_C PF03796.15 gi|302348012|ref|YP_003815650.1| - 0.0037 16.6 0.1 0.0063 15.9 0.0 1.4 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|302348012|ref|YP_003815650.1| - 0.0056 16.4 0.1 0.0084 15.8 0.1 1.4 2 0 0 2 2 1 1 AAA domain ABC_tran PF00005.27 gi|302348012|ref|YP_003815650.1| - 0.0068 16.9 1.1 0.017 15.7 0.2 1.9 2 0 0 2 2 2 1 ABC transporter AAA_30 PF13604.6 gi|302348012|ref|YP_003815650.1| - 0.0073 16.1 0.6 0.028 14.2 0.6 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|302348012|ref|YP_003815650.1| - 0.0083 15.7 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|302348012|ref|YP_003815650.1| - 0.0097 15.9 0.8 0.23 11.5 0.2 2.4 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|302348012|ref|YP_003815650.1| - 0.01 16.2 0.0 0.031 14.7 0.0 1.8 2 0 0 2 2 1 0 RNA helicase Parvo_NS1 PF01057.17 gi|302348012|ref|YP_003815650.1| - 0.013 14.6 0.0 0.033 13.3 0.0 1.5 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 MeaB PF03308.16 gi|302348012|ref|YP_003815650.1| - 0.018 14.0 1.4 0.05 12.6 0.3 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|302348012|ref|YP_003815650.1| - 0.027 14.5 0.0 0.039 14.0 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATPase PF06745.13 gi|302348012|ref|YP_003815650.1| - 0.041 13.2 0.4 0.079 12.3 0.2 1.6 2 0 0 2 2 2 0 KaiC AAA_28 PF13521.6 gi|302348012|ref|YP_003815650.1| - 0.052 13.8 0.6 0.091 13.0 0.6 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|302348012|ref|YP_003815650.1| - 0.067 13.1 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase KTI12 PF08433.10 gi|302348012|ref|YP_003815650.1| - 0.068 12.6 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TsaE PF02367.17 gi|302348012|ref|YP_003815650.1| - 0.069 13.2 0.3 0.11 12.5 0.3 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|302348012|ref|YP_003815650.1| - 0.089 12.7 0.1 0.45 10.4 0.1 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|302348012|ref|YP_003815650.1| - 0.11 11.7 0.1 0.16 11.2 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|302348012|ref|YP_003815650.1| - 0.12 11.6 0.2 0.27 10.5 0.2 1.5 1 0 0 1 1 1 0 Zeta toxin Elong_Iki1 PF10483.9 gi|302348012|ref|YP_003815650.1| - 0.15 11.6 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 ParA PF10609.9 gi|302348012|ref|YP_003815650.1| - 0.18 11.2 0.1 0.27 10.7 0.1 1.2 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_33 PF13671.6 gi|302348012|ref|YP_003815650.1| - 0.18 11.9 0.3 0.41 10.8 0.1 1.6 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|302348012|ref|YP_003815650.1| - 0.2 11.6 0.1 0.36 10.7 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Viral_helicase1 PF01443.18 gi|302348012|ref|YP_003815650.1| - 0.23 11.2 0.2 1.5 8.5 0.1 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ArsA_ATPase PF02374.15 gi|302348012|ref|YP_003815650.1| - 0.26 10.5 0.2 0.39 9.9 0.2 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase TRM PF02005.16 gi|302348013|ref|YP_003815651.1| - 4.2e-85 286.2 0.0 6.5e-85 285.6 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|302348013|ref|YP_003815651.1| - 0.00083 19.0 0.0 0.0022 17.7 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|302348013|ref|YP_003815651.1| - 0.0047 16.5 0.0 0.011 15.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Met_10 PF02475.16 gi|302348013|ref|YP_003815651.1| - 0.014 15.1 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein PrmA PF06325.13 gi|302348013|ref|YP_003815651.1| - 0.08 12.3 0.1 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF373 PF04123.13 gi|302348014|ref|YP_003815652.1| - 2.1e-71 241.1 7.6 2.5e-71 240.8 7.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) tRNA_int_endo PF01974.17 gi|302348015|ref|YP_003815653.1| - 0.0017 18.4 0.1 0.0056 16.7 0.1 1.8 1 1 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain T2SSF PF00482.23 gi|302348016|ref|YP_003815654.1| - 0.0023 17.9 4.3 0.0023 17.9 4.3 3.9 4 1 0 4 4 4 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|302348017|ref|YP_003815655.1| - 9.3e-38 129.8 0.0 1.4e-37 129.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|302348017|ref|YP_003815655.1| - 0.0035 16.6 0.0 0.013 14.8 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_22 PF13401.6 gi|302348017|ref|YP_003815655.1| - 0.0038 17.5 0.0 0.01 16.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|302348017|ref|YP_003815655.1| - 0.0087 16.1 0.0 0.023 14.7 0.0 1.7 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|302348017|ref|YP_003815655.1| - 0.02 14.5 0.1 0.035 13.7 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|302348017|ref|YP_003815655.1| - 0.029 14.1 0.0 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.6 gi|302348017|ref|YP_003815655.1| - 0.062 13.0 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|302348017|ref|YP_003815655.1| - 0.067 13.7 0.0 0.21 12.1 0.0 1.8 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.6 gi|302348017|ref|YP_003815655.1| - 0.07 13.5 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|302348017|ref|YP_003815655.1| - 0.082 13.5 0.0 0.17 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|302348017|ref|YP_003815655.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|302348017|ref|YP_003815655.1| - 0.12 12.7 0.1 0.36 11.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|302348017|ref|YP_003815655.1| - 0.13 11.6 0.0 0.25 10.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|302348017|ref|YP_003815655.1| - 0.15 12.3 0.1 0.95 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|302348017|ref|YP_003815655.1| - 0.16 12.0 0.0 0.95 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|302348017|ref|YP_003815655.1| - 0.17 12.4 0.0 0.33 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|302348017|ref|YP_003815655.1| - 0.18 11.5 0.5 0.38 10.4 0.1 1.7 2 0 0 2 2 2 0 AAA domain DS PF01916.17 gi|302348019|ref|YP_003815657.1| - 1.7e-88 296.6 0.0 1.9e-88 296.4 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Topo-VIb_trans PF09239.11 gi|302348020|ref|YP_003815658.1| - 1.5e-62 210.2 0.1 2.7e-62 209.3 0.1 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|302348020|ref|YP_003815658.1| - 5.9e-11 42.9 0.0 1.1e-10 42.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|302348020|ref|YP_003815658.1| - 1.1e-09 38.3 0.0 2.2e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|302348020|ref|YP_003815658.1| - 0.0026 16.6 0.0 0.0047 15.8 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) Hom_end PF05204.14 gi|302348020|ref|YP_003815658.1| - 0.15 12.3 0.1 0.46 10.7 0.1 1.8 1 1 0 1 1 1 0 Homing endonuclease TP6A_N PF04406.14 gi|302348021|ref|YP_003815659.1| - 1e-20 73.5 0.1 1.6e-20 72.8 0.1 1.3 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF313 PF03754.13 gi|302348021|ref|YP_003815659.1| - 0.075 13.2 0.1 0.26 11.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF313) DUF2399 PF09664.10 gi|302348021|ref|YP_003815659.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) PCNA_N PF00705.18 gi|302348022|ref|YP_003815660.1| - 1.6e-11 44.0 0.1 1.5e-10 40.9 0.0 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Hus1 PF04005.12 gi|302348022|ref|YP_003815660.1| - 2.8e-06 26.7 0.1 6.6e-06 25.5 0.1 1.7 1 1 0 1 1 1 1 Hus1-like protein GvpD PF07088.11 gi|302348022|ref|YP_003815660.1| - 0.013 14.2 0.1 0.016 13.8 0.1 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein Rad9 PF04139.13 gi|302348022|ref|YP_003815660.1| - 0.063 12.7 0.1 0.15 11.5 0.1 1.5 1 1 0 1 1 1 0 Rad9 PCNA_C PF02747.15 gi|302348022|ref|YP_003815660.1| - 0.14 12.4 1.4 0.94 9.6 0.2 2.8 1 1 2 3 3 3 0 Proliferating cell nuclear antigen, C-terminal domain Ribosomal_S8 PF00410.19 gi|302348023|ref|YP_003815661.1| - 3.1e-25 88.5 0.0 5.1e-25 87.9 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|302348024|ref|YP_003815662.1| - 4.3e-13 48.8 0.8 5e-13 48.6 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|302348024|ref|YP_003815662.1| - 0.00026 20.8 2.0 0.00044 20.0 2.0 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DZR PF12773.7 gi|302348024|ref|YP_003815662.1| - 0.0061 16.6 0.3 0.0067 16.4 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf_UBZ PF18439.1 gi|302348024|ref|YP_003815662.1| - 0.13 11.8 0.9 7.7 6.2 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_L5_C PF00673.21 gi|302348025|ref|YP_003815663.1| - 1e-21 76.9 0.0 1.8e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|302348025|ref|YP_003815663.1| - 3.3e-18 65.8 0.2 7.6e-18 64.6 0.2 1.6 1 0 0 1 1 1 1 Ribosomal protein L5 B3_4 PF03483.17 gi|302348025|ref|YP_003815663.1| - 0.076 12.7 0.0 0.23 11.1 0.0 1.7 1 1 1 2 2 2 0 B3/4 domain Ribosomal_S4e PF00900.20 gi|302348026|ref|YP_003815664.1| - 3.5e-21 74.9 0.0 7.6e-21 73.8 0.0 1.6 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|302348026|ref|YP_003815664.1| - 7.1e-14 51.6 3.3 1.2e-13 50.9 3.3 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|302348026|ref|YP_003815664.1| - 2.3e-12 46.4 0.1 4.1e-12 45.6 0.1 1.5 1 0 0 1 1 1 1 S4 domain 40S_S4_C PF16121.5 gi|302348026|ref|YP_003815664.1| - 7.7e-05 22.3 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 40S ribosomal protein S4 C-terminus PetN PF03742.14 gi|302348026|ref|YP_003815664.1| - 0.0068 16.2 0.7 0.0068 16.2 0.7 1.9 2 0 0 2 2 2 1 PetN KOW PF00467.29 gi|302348026|ref|YP_003815664.1| - 0.056 13.4 0.0 0.056 13.4 0.0 2.5 3 0 0 3 3 3 0 KOW motif Ribosomal_L26 PF16906.5 gi|302348027|ref|YP_003815665.1| - 3.8e-31 107.4 0.2 4.6e-31 107.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|302348027|ref|YP_003815665.1| - 9.9e-07 28.5 5.1 2e-06 27.5 5.1 1.6 1 1 0 1 1 1 1 KOW motif gag-asp_proteas PF13975.6 gi|302348027|ref|YP_003815665.1| - 0.093 13.3 0.1 0.18 12.4 0.0 1.5 2 0 0 2 2 2 0 gag-polyprotein putative aspartyl protease SH3_3 PF08239.11 gi|302348027|ref|YP_003815665.1| - 0.14 12.5 0.6 0.3 11.4 0.3 1.6 2 0 0 2 2 2 0 Bacterial SH3 domain Ribosomal_L14 PF00238.19 gi|302348028|ref|YP_003815666.1| - 5.6e-36 123.3 0.2 7.3e-36 122.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|302348029|ref|YP_003815667.1| - 4.7e-22 77.9 2.0 5.9e-22 77.6 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.16 gi|302348030|ref|YP_003815668.1| - 7.3e-15 54.7 0.0 8.1e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|302348031|ref|YP_003815669.1| - 6.6e-17 61.2 4.0 9.6e-17 60.7 4.0 1.2 1 0 0 1 1 1 1 Ribosomal L29 protein MRP-L47 PF06984.13 gi|302348031|ref|YP_003815669.1| - 0.015 15.4 0.4 0.023 14.8 0.4 1.3 1 0 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) DASH_Dad1 PF08649.10 gi|302348031|ref|YP_003815669.1| - 0.033 14.4 0.4 0.22 11.8 0.0 2.0 2 0 0 2 2 2 0 DASH complex subunit Dad1 Spc7 PF08317.11 gi|302348031|ref|YP_003815669.1| - 0.038 12.9 2.1 0.042 12.7 2.1 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein Allexi_40kDa PF05549.11 gi|302348031|ref|YP_003815669.1| - 0.07 12.6 0.2 0.083 12.4 0.2 1.0 1 0 0 1 1 1 0 Allexivirus 40kDa protein CorA PF01544.18 gi|302348031|ref|YP_003815669.1| - 0.094 12.0 1.3 0.11 11.8 1.3 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Ribosomal_S3_C PF00189.20 gi|302348032|ref|YP_003815670.1| - 3.8e-23 81.8 7.5 2.3e-22 79.3 2.9 3.0 3 0 0 3 3 3 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|302348032|ref|YP_003815670.1| - 1.8e-10 40.5 0.0 4.5e-10 39.2 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 gi|302348032|ref|YP_003815670.1| - 0.0059 16.4 1.0 0.013 15.3 0.1 2.0 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|302348032|ref|YP_003815670.1| - 0.02 14.7 0.2 0.19 11.6 0.0 2.6 2 0 0 2 2 2 0 KH domain DUF3126 PF11324.8 gi|302348032|ref|YP_003815670.1| - 0.041 13.7 0.1 0.24 11.2 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3126) Ribosomal_L22 PF00237.19 gi|302348033|ref|YP_003815671.1| - 4e-31 107.3 0.1 4.8e-31 107.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|302348034|ref|YP_003815672.1| - 6.2e-31 106.1 0.3 8.4e-31 105.7 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 RNA_pol_Rpb2_4 PF04566.13 gi|302348034|ref|YP_003815672.1| - 0.044 14.1 0.3 0.15 12.4 0.1 2.1 2 1 1 3 3 3 0 RNA polymerase Rpb2, domain 4 MazE_antitoxin PF04014.18 gi|302348035|ref|YP_003815673.1| - 2.9e-06 27.1 0.3 9.6e-06 25.4 0.1 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin ACT PF01842.25 gi|302348035|ref|YP_003815673.1| - 3.4e-05 23.5 0.2 7.7e-05 22.4 0.2 1.6 1 1 0 1 1 1 1 ACT domain MraZ PF02381.18 gi|302348035|ref|YP_003815673.1| - 0.00013 21.9 0.0 0.00026 20.9 0.0 1.5 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like ACT_4 PF13291.6 gi|302348035|ref|YP_003815673.1| - 0.0041 17.7 1.0 0.0094 16.5 1.0 1.6 1 1 0 1 1 1 1 ACT domain PrlF_antitoxin PF15937.5 gi|302348035|ref|YP_003815673.1| - 0.024 15.1 0.1 0.06 13.8 0.0 1.8 1 1 0 2 2 2 0 prlF antitoxin for toxin YhaV_toxin tRNA-synt_1g PF09334.11 gi|302348036|ref|YP_003815674.1| - 1e-147 492.0 0.0 1.3e-147 491.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|302348036|ref|YP_003815674.1| - 9.1e-15 54.9 0.0 1.5e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1 PF00133.22 gi|302348036|ref|YP_003815674.1| - 3.3e-07 28.9 0.4 1.7e-06 26.6 0.0 2.4 2 2 1 3 3 3 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|302348036|ref|YP_003815674.1| - 0.009 15.4 0.0 0.041 13.2 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|302348036|ref|YP_003815674.1| - 0.039 12.9 0.0 2.2 7.1 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF5610 PF18433.1 gi|302348036|ref|YP_003815674.1| - 0.16 12.5 0.0 0.32 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5610) DZR PF12773.7 gi|302348036|ref|YP_003815674.1| - 0.16 12.0 4.6 0.42 10.7 4.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|302348036|ref|YP_003815674.1| - 6 7.1 9.5 1.8 8.8 0.3 3.3 3 0 0 3 3 3 0 C4-type zinc ribbon domain NTP_transf_2 PF01909.23 gi|302348037|ref|YP_003815675.1| - 0.18 12.1 0.0 0.26 11.6 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyltransferase domain NTP_transf_2 PF01909.23 gi|302348038|ref|YP_003815676.1| - 6.9e-06 26.3 0.0 1.2e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|302348038|ref|YP_003815676.1| - 0.0019 18.3 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase RlaP PF10127.9 gi|302348038|ref|YP_003815676.1| - 0.0091 15.6 0.0 0.025 14.2 0.0 1.6 1 1 1 2 2 2 1 RNA repair pathway DNA polymerase beta family RTP PF02334.16 gi|302348038|ref|YP_003815676.1| - 0.029 15.0 0.0 0.042 14.5 0.0 1.3 1 0 0 1 1 1 0 Replication terminator protein ArsA_HSP20 PF17886.1 gi|302348039|ref|YP_003815677.1| - 1.2e-14 53.5 0.0 1.9e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|302348039|ref|YP_003815677.1| - 2.9e-11 43.4 1.0 5.4e-10 39.3 1.0 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.16 gi|302348039|ref|YP_003815677.1| - 4.3e-06 27.6 0.2 8.8e-06 26.7 0.2 1.5 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|302348039|ref|YP_003815677.1| - 0.00059 19.9 0.0 0.00074 19.6 0.0 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|302348039|ref|YP_003815677.1| - 0.0014 19.0 0.0 0.0022 18.4 0.0 1.3 1 0 0 1 1 1 1 PIH1 CS-like domain Glu-tRNAGln PF02686.15 gi|302348039|ref|YP_003815677.1| - 0.039 14.3 2.3 0.57 10.5 0.4 2.5 2 1 0 2 2 2 0 Glu-tRNAGln amidotransferase C subunit NYD-SP28 PF14772.6 gi|302348039|ref|YP_003815677.1| - 0.1 12.7 0.8 0.16 12.1 0.8 1.3 1 0 0 1 1 1 0 Sperm tail DAO PF01266.24 gi|302348040|ref|YP_003815678.1| - 6.4e-09 35.8 0.4 0.0035 17.0 0.0 2.6 1 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|302348040|ref|YP_003815678.1| - 4e-08 32.9 0.0 0.0019 17.5 0.2 2.9 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|302348040|ref|YP_003815678.1| - 4.5e-05 22.8 0.0 7.9e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|302348040|ref|YP_003815678.1| - 0.00011 21.4 0.1 0.36 9.9 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|302348040|ref|YP_003815678.1| - 0.00059 19.3 0.1 0.0046 16.4 0.1 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|302348040|ref|YP_003815678.1| - 0.0012 18.1 0.0 0.0051 16.1 0.0 1.9 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|302348040|ref|YP_003815678.1| - 0.0053 15.9 0.1 0.049 12.7 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|302348040|ref|YP_003815678.1| - 0.0061 16.8 1.5 0.019 15.2 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|302348040|ref|YP_003815678.1| - 0.014 14.3 0.1 1.6 7.5 0.0 2.7 2 1 0 2 2 2 0 Tryptophan halogenase tRNA-synt_1e PF01406.19 gi|302348041|ref|YP_003815679.1| - 5.4e-124 413.4 0.0 8.3e-124 412.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|302348041|ref|YP_003815679.1| - 4.2e-15 55.4 0.1 8.7e-09 34.6 0.1 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|302348041|ref|YP_003815679.1| - 1e-06 27.3 0.1 1.2e-05 23.8 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|302348041|ref|YP_003815679.1| - 0.0041 16.1 0.1 0.097 11.6 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1f PF01921.18 gi|302348041|ref|YP_003815679.1| - 0.051 12.5 0.2 0.37 9.6 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) UbiA PF01040.18 gi|302348042|ref|YP_003815680.1| - 1.9e-27 96.2 15.7 2.4e-27 95.8 15.7 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Ribosomal_L11_N PF03946.14 gi|302348044|ref|YP_003815682.1| - 1.6e-24 85.5 0.8 4e-24 84.2 0.8 1.7 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|302348044|ref|YP_003815682.1| - 5e-16 59.0 1.4 1e-15 58.0 1.4 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain AFOR_N PF02730.15 gi|302348045|ref|YP_003815683.1| - 2.9e-41 141.5 0.1 4.4e-41 140.9 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|302348045|ref|YP_003815683.1| - 4.4e-15 55.6 0.0 1.7e-14 53.6 0.0 1.8 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 RTP1_C2 PF10304.9 gi|302348045|ref|YP_003815683.1| - 0.042 13.5 0.4 0.092 12.5 0.4 1.5 1 0 0 1 1 1 0 Required for nuclear transport of RNA pol II C-terminus 2 tRNA-synt_2c PF01411.19 gi|302348046|ref|YP_003815684.1| - 1.4e-112 377.1 0.0 4.5e-112 375.3 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|302348046|ref|YP_003815684.1| - 7.7e-14 51.5 1.1 1.6e-13 50.5 1.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|302348046|ref|YP_003815684.1| - 0.00011 22.6 0.2 0.00023 21.6 0.2 1.6 1 0 0 1 1 1 1 DHHA1 domain ABC_tran_CTD PF16326.5 gi|302348046|ref|YP_003815684.1| - 0.022 15.0 0.4 0.057 13.7 0.4 1.7 1 0 0 1 1 1 0 ABC transporter C-terminal domain Trm5_N PF18093.1 gi|302348046|ref|YP_003815684.1| - 0.085 12.8 2.2 2.3 8.2 0.0 2.5 2 0 0 2 2 2 0 tRNA methyltransferase 5 N-terminal domain tRNA-synt_2e PF02091.15 gi|302348046|ref|YP_003815684.1| - 0.11 11.7 0.1 0.19 10.9 0.1 1.3 1 0 0 1 1 1 0 Glycyl-tRNA synthetase alpha subunit Ribosomal_60s PF00428.19 gi|302348047|ref|YP_003815685.1| - 7.8e-17 61.7 9.1 1e-16 61.3 9.1 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|302348047|ref|YP_003815685.1| - 0.0085 16.1 6.9 1.2 9.2 4.0 2.3 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DUF5525 PF17663.1 gi|302348047|ref|YP_003815685.1| - 0.028 12.5 0.5 0.03 12.4 0.5 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5525) TAFII28 PF04719.14 gi|302348047|ref|YP_003815685.1| - 0.062 13.4 0.1 0.074 13.2 0.1 1.2 1 0 0 1 1 1 0 hTAFII28-like protein conserved region YceD PF02620.17 gi|302348047|ref|YP_003815685.1| - 0.08 13.1 0.1 0.086 13.0 0.1 1.1 1 0 0 1 1 1 0 Large ribosomal RNA subunit accumulation protein YceD TFIID_30kDa PF03540.13 gi|302348047|ref|YP_003815685.1| - 0.093 12.7 0.1 0.2 11.6 0.1 1.6 1 1 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit AMP-binding PF00501.28 gi|302348047|ref|YP_003815685.1| - 0.17 10.5 1.3 0.19 10.3 1.3 1.0 1 0 0 1 1 1 0 AMP-binding enzyme RL10P_insert PF17777.1 gi|302348048|ref|YP_003815686.1| - 1.2e-22 79.7 0.1 4.4e-22 77.9 0.0 2.1 2 0 0 2 2 2 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|302348048|ref|YP_003815686.1| - 1.6e-20 73.1 0.6 3.3e-20 72.1 0.6 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.19 gi|302348048|ref|YP_003815686.1| - 0.0015 19.0 13.4 0.004 17.7 13.4 1.8 1 0 0 1 1 1 1 60s Acidic ribosomal protein Ribosomal_L1 PF00687.21 gi|302348049|ref|YP_003815687.1| - 2.9e-35 121.9 0.0 3.2e-35 121.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family RE_R_Pab1 PF09522.10 gi|302348050|ref|YP_003815688.1| - 7.5e-08 32.5 0.1 1e-07 32.0 0.1 1.3 1 0 0 1 1 1 1 R.Pab1 restriction endonuclease N6_Mtase PF02384.16 gi|302348051|ref|YP_003815689.1| - 5.5e-24 85.0 0.0 5.9e-23 81.6 0.0 2.0 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_25 PF13649.6 gi|302348051|ref|YP_003815689.1| - 4.2e-05 24.2 0.0 0.0001 22.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|302348051|ref|YP_003815689.1| - 0.00068 20.2 0.0 0.0017 19.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|302348051|ref|YP_003815689.1| - 0.005 16.6 0.0 0.0087 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methylase_S PF01420.19 gi|302348051|ref|YP_003815689.1| - 0.0064 16.7 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain MTS PF05175.14 gi|302348051|ref|YP_003815689.1| - 0.0096 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|302348051|ref|YP_003815689.1| - 0.026 14.2 0.0 0.28 10.8 0.0 2.1 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|302348051|ref|YP_003815689.1| - 0.03 14.2 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Eco57I PF07669.11 gi|302348051|ref|YP_003815689.1| - 0.035 14.6 0.0 0.075 13.5 0.0 1.5 1 0 0 1 1 1 0 Eco57I restriction-modification methylase DUF2252 PF10009.9 gi|302348051|ref|YP_003815689.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) DZR PF12773.7 gi|302348054|ref|YP_003815692.1| - 0.00017 21.6 3.3 0.051 13.6 3.2 2.4 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|302348054|ref|YP_003815692.1| - 0.00033 20.0 2.5 0.23 10.9 0.0 3.2 3 0 0 3 3 3 1 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|302348054|ref|YP_003815692.1| - 0.00079 19.3 5.3 1.1 9.2 2.5 3.2 2 1 1 3 3 3 1 SprT-like zinc ribbon domain DUF1272 PF06906.11 gi|302348054|ref|YP_003815692.1| - 0.0008 19.4 1.6 0.22 11.6 0.2 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1272) zinc-ribbons_6 PF07191.12 gi|302348054|ref|YP_003815692.1| - 0.00096 19.1 1.2 0.066 13.2 0.2 2.4 1 1 1 2 2 2 1 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|302348054|ref|YP_003815692.1| - 0.0017 17.8 6.4 0.006 16.1 2.3 2.4 2 1 0 2 2 2 1 TFIIB zinc-binding zf-C2HC5 PF06221.13 gi|302348054|ref|YP_003815692.1| - 0.0018 18.2 2.0 0.0071 16.3 0.7 2.1 2 1 0 2 2 2 1 Putative zinc finger motif, C2HC5-type zinc_ribbon_10 PF10058.9 gi|302348054|ref|YP_003815692.1| - 0.0058 16.3 7.0 0.0088 15.7 4.6 2.3 1 1 1 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein C1_2 PF03107.16 gi|302348054|ref|YP_003815692.1| - 0.0069 16.7 3.9 0.11 12.8 0.7 2.4 1 1 1 2 2 2 1 C1 domain PhnA_Zn_Ribbon PF08274.12 gi|302348054|ref|YP_003815692.1| - 0.012 15.6 0.6 6.1 6.9 0.2 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF3268 PF11672.8 gi|302348054|ref|YP_003815692.1| - 0.016 15.5 2.2 1 9.7 0.6 2.2 2 0 0 2 2 2 0 zinc-finger-containing domain Zn_Tnp_IS1595 PF12760.7 gi|302348054|ref|YP_003815692.1| - 0.017 15.1 9.1 0.78 9.8 0.3 3.0 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|302348054|ref|YP_003815692.1| - 0.025 15.0 4.4 4.3 7.9 0.1 3.0 3 0 0 3 3 3 0 Zinc-finger double domain zf-BED PF02892.15 gi|302348054|ref|YP_003815692.1| - 0.028 14.4 3.0 4.5 7.4 0.0 2.7 2 1 1 3 3 3 0 BED zinc finger zf-C4_Topoisom PF01396.19 gi|302348054|ref|YP_003815692.1| - 0.037 13.8 2.8 1.4 8.8 0.0 2.7 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DUF35_N PF12172.8 gi|302348054|ref|YP_003815692.1| - 0.039 13.8 5.6 14 5.7 0.1 3.3 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|302348054|ref|YP_003815692.1| - 0.046 13.7 3.7 1.3 9.1 3.7 2.2 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Di19 PF05605.12 gi|302348054|ref|YP_003815692.1| - 0.046 14.0 4.2 1.7 9.0 0.1 2.8 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Nudix_N_2 PF14803.6 gi|302348054|ref|YP_003815692.1| - 0.047 13.6 4.2 2.9 7.9 0.0 3.2 3 0 0 3 3 3 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|302348054|ref|YP_003815692.1| - 0.048 13.8 8.4 0.073 13.2 3.6 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Desulfoferrod_N PF06397.12 gi|302348054|ref|YP_003815692.1| - 0.05 13.2 3.7 2.7 7.7 0.0 3.1 3 1 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-LITAF-like PF10601.9 gi|302348054|ref|YP_003815692.1| - 0.059 13.6 3.5 7.3 6.9 0.2 3.0 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain Terminase_GpA PF05876.12 gi|302348054|ref|YP_003815692.1| - 0.075 11.6 1.3 1.2 7.6 0.1 2.0 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) zinc_ribbon_2 PF13240.6 gi|302348054|ref|YP_003815692.1| - 0.13 12.0 8.7 2.4 8.0 0.2 3.4 3 1 1 4 4 4 0 zinc-ribbon domain PyrI_C PF02748.15 gi|302348054|ref|YP_003815692.1| - 0.17 11.8 1.4 1.1 9.2 0.5 2.3 2 1 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Cys_rich_CPXG PF14255.6 gi|302348054|ref|YP_003815692.1| - 0.19 11.7 3.9 4.7 7.2 0.1 3.0 3 0 0 3 3 3 0 Cysteine-rich CPXCG Lar_restr_allev PF14354.6 gi|302348054|ref|YP_003815692.1| - 0.2 12.1 6.5 0.4 11.1 0.1 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-C3HC4_3 PF13920.6 gi|302348054|ref|YP_003815692.1| - 0.21 11.5 6.5 1.3 8.9 3.4 2.7 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-Sec23_Sec24 PF04810.15 gi|302348054|ref|YP_003815692.1| - 0.22 11.6 6.1 0.36 10.9 1.5 2.6 2 1 0 2 2 2 0 Sec23/Sec24 zinc finger zf-HIT PF04438.16 gi|302348054|ref|YP_003815692.1| - 0.23 11.4 12.4 2.8 7.9 1.3 3.2 2 1 1 3 3 3 0 HIT zinc finger DUF2197 PF09963.9 gi|302348054|ref|YP_003815692.1| - 0.24 11.7 0.4 0.24 11.7 0.4 2.0 2 1 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2197) OrfB_Zn_ribbon PF07282.11 gi|302348054|ref|YP_003815692.1| - 0.27 11.2 4.6 0.34 10.9 0.8 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.16 gi|302348054|ref|YP_003815692.1| - 0.37 10.9 0.3 0.37 10.9 0.3 3.0 4 0 0 4 4 3 0 NAD-dependent DNA ligase C4 zinc finger domain Tnp_zf-ribbon_2 PF13842.6 gi|302348054|ref|YP_003815692.1| - 0.39 11.5 5.8 2.6 8.9 5.8 2.2 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon Prok-RING_4 PF14447.6 gi|302348054|ref|YP_003815692.1| - 0.41 10.6 4.5 16 5.5 4.5 2.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 zf-C4_ClpX PF06689.13 gi|302348054|ref|YP_003815692.1| - 0.49 10.3 3.9 39 4.2 0.0 3.1 2 1 0 2 2 2 0 ClpX C4-type zinc finger CpXC PF14353.6 gi|302348054|ref|YP_003815692.1| - 0.73 9.9 4.1 6.9 6.7 0.1 2.8 2 1 1 3 3 3 0 CpXC protein zf-C2H2 PF00096.26 gi|302348054|ref|YP_003815692.1| - 0.88 10.2 4.2 57 4.4 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type Ribosomal_S27e PF01667.17 gi|302348054|ref|YP_003815692.1| - 1.1 9.0 5.5 15 5.4 0.1 3.0 2 1 0 3 3 3 0 Ribosomal protein S27 Rad50_zn_hook PF04423.14 gi|302348054|ref|YP_003815692.1| - 1.2 9.1 4.9 8.9 6.2 0.1 2.9 3 0 0 3 3 3 0 Rad50 zinc hook motif zf-RING_5 PF14634.6 gi|302348054|ref|YP_003815692.1| - 1.7 8.7 7.6 41 4.2 7.6 2.6 1 1 0 1 1 1 0 zinc-RING finger domain DNA_RNApol_7kD PF03604.13 gi|302348054|ref|YP_003815692.1| - 2.2 8.1 9.3 6.4 6.6 0.6 3.3 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-CHY PF05495.12 gi|302348054|ref|YP_003815692.1| - 2.8 8.5 7.7 37 4.9 7.8 2.6 1 1 0 1 1 1 0 CHY zinc finger CEBP_ZZ PF16366.5 gi|302348054|ref|YP_003815692.1| - 2.9 8.2 6.9 0.5 10.6 3.4 1.5 2 0 0 2 2 1 0 Cytoplasmic polyadenylation element-binding protein ZZ domain zf-C2H2_4 PF13894.6 gi|302348054|ref|YP_003815692.1| - 3.9 8.6 8.2 31 5.8 0.2 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger Novirhabdo_Nv PF05554.11 gi|302348056|ref|YP_003815694.1| - 0.0025 17.6 0.0 0.0031 17.3 0.0 1.1 1 0 0 1 1 1 1 Viral hemorrhagic septicemia virus non-virion protein Wyosine_form PF08608.12 gi|302348057|ref|YP_003815695.1| - 2.8e-23 82.0 0.0 1.3e-22 79.9 0.0 2.1 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.21 gi|302348057|ref|YP_003815695.1| - 1.3e-18 68.0 0.1 5.1e-18 66.0 0.1 2.0 1 1 0 1 1 1 1 Radical SAM superfamily DUF3928 PF13065.6 gi|302348057|ref|YP_003815695.1| - 0.028 15.2 0.3 0.13 13.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3928) Hydrolase PF00702.26 gi|302348057|ref|YP_003815695.1| - 0.065 13.5 0.0 2.7 8.2 0.0 2.3 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.14 gi|302348058|ref|YP_003815696.1| - 1.5e-49 168.8 0.0 1.8e-49 168.6 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|302348058|ref|YP_003815696.1| - 1.5e-24 86.8 0.0 1.2e-18 67.4 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|302348058|ref|YP_003815696.1| - 9.9e-18 64.5 2.2 3.7e-12 46.6 0.1 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|302348058|ref|YP_003815696.1| - 6.1e-09 35.4 2.2 0.00022 20.5 0.6 4.0 2 2 1 4 4 4 2 FAD binding domain HI0933_like PF03486.14 gi|302348058|ref|YP_003815696.1| - 3.7e-07 29.2 1.0 0.02 13.6 0.3 3.4 2 1 1 3 3 3 3 HI0933-like protein GIDA PF01134.22 gi|302348058|ref|YP_003815696.1| - 1e-05 24.8 3.5 0.0075 15.4 0.1 3.8 4 0 0 4 4 4 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|302348058|ref|YP_003815696.1| - 3.4e-05 23.4 2.6 0.00014 21.4 0.0 2.6 2 1 1 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.24 gi|302348058|ref|YP_003815696.1| - 4.7e-05 23.1 0.7 0.028 14.0 0.5 2.8 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|302348058|ref|YP_003815696.1| - 4.9e-05 22.7 1.6 0.0067 15.7 0.7 2.6 2 1 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|302348058|ref|YP_003815696.1| - 0.00048 19.4 0.1 0.00048 19.4 0.1 2.3 3 0 0 3 3 3 1 Thi4 family K_oxygenase PF13434.6 gi|302348058|ref|YP_003815696.1| - 0.0014 17.8 0.1 5.4 6.0 0.0 3.1 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|302348058|ref|YP_003815696.1| - 0.0047 17.3 0.5 1.5 9.3 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|302348058|ref|YP_003815696.1| - 0.015 15.5 0.0 0.015 15.5 0.0 2.2 3 0 0 3 3 2 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|302348058|ref|YP_003815696.1| - 0.023 14.0 0.2 0.26 10.6 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|302348058|ref|YP_003815696.1| - 0.031 13.1 0.4 0.68 8.7 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|302348058|ref|YP_003815696.1| - 0.036 13.1 0.0 0.06 12.4 0.0 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|302348058|ref|YP_003815696.1| - 0.15 12.1 0.1 17 5.3 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding FCD PF07729.12 gi|302348059|ref|YP_003815697.1| - 1.7e-26 93.1 4.7 2.5e-26 92.6 4.7 1.2 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 gi|302348059|ref|YP_003815697.1| - 4.9e-18 64.5 0.4 4.8e-17 61.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|302348059|ref|YP_003815697.1| - 0.00055 19.8 0.0 0.0016 18.3 0.0 1.8 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|302348059|ref|YP_003815697.1| - 0.0018 18.4 0.4 0.0092 16.2 0.0 2.3 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|302348059|ref|YP_003815697.1| - 0.0027 18.1 0.0 0.0071 16.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|302348059|ref|YP_003815697.1| - 0.0035 17.2 0.1 0.014 15.3 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|302348059|ref|YP_003815697.1| - 0.0044 17.3 0.0 0.039 14.3 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|302348059|ref|YP_003815697.1| - 0.0051 16.8 0.0 0.015 15.3 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|302348059|ref|YP_003815697.1| - 0.0064 16.0 0.0 0.029 13.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|302348059|ref|YP_003815697.1| - 0.0074 16.2 0.0 0.021 14.7 0.0 1.8 1 1 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|302348059|ref|YP_003815697.1| - 0.0091 15.7 0.0 0.025 14.3 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain DUF1128 PF06569.11 gi|302348059|ref|YP_003815697.1| - 0.028 14.4 0.3 0.11 12.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1128) HTH_36 PF13730.6 gi|302348059|ref|YP_003815697.1| - 0.029 14.3 0.0 0.057 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain APOBEC4 PF18775.1 gi|302348059|ref|YP_003815697.1| - 0.053 13.7 0.1 0.21 11.8 0.0 1.9 2 0 0 2 2 2 0 APOBEC4 AbiEi_4 PF13338.6 gi|302348059|ref|YP_003815697.1| - 0.068 13.3 0.1 2.3 8.4 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin BLACT_WH PF17778.1 gi|302348059|ref|YP_003815697.1| - 0.11 12.5 2.8 0.13 12.2 0.1 2.6 3 1 1 4 4 4 0 Beta-lactamase associated winged helix domain RMMBL PF07521.12 gi|302348061|ref|YP_003815699.1| - 3.8e-05 23.5 0.2 0.001 18.9 0.0 2.5 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|302348061|ref|YP_003815699.1| - 0.0012 18.3 0.0 0.0027 17.2 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DRMBL PF07522.14 gi|302348061|ref|YP_003815699.1| - 0.046 13.9 0.0 0.084 13.1 0.0 1.4 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase T2SS-T3SS_pil_N PF13629.6 gi|302348062|ref|YP_003815700.1| - 0.015 15.0 0.1 0.017 14.9 0.1 1.1 1 0 0 1 1 1 0 Pilus formation protein N terminal region AAA_lid_10 PF17872.1 gi|302348062|ref|YP_003815700.1| - 0.15 12.2 0.1 0.16 12.1 0.1 1.1 1 0 0 1 1 1 0 AAA lid domain FdhE PF04216.12 gi|302348063|ref|YP_003815701.1| - 2.4e-10 40.8 0.0 3.2e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Lar_restr_allev PF14354.6 gi|302348063|ref|YP_003815701.1| - 4.6e-06 26.9 6.1 0.0024 18.2 0.4 2.4 1 1 1 2 2 2 2 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.12 gi|302348063|ref|YP_003815701.1| - 0.00016 21.6 0.6 0.00016 21.6 0.6 3.1 2 1 0 2 2 2 1 PhnA Zinc-Ribbon zf-C3HC4_3 PF13920.6 gi|302348063|ref|YP_003815701.1| - 0.0024 17.7 3.3 0.0054 16.6 1.1 2.1 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) Elf1 PF05129.13 gi|302348063|ref|YP_003815701.1| - 0.0033 17.5 0.4 0.63 10.1 0.0 2.3 2 0 0 2 2 2 1 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.6 gi|302348063|ref|YP_003815701.1| - 0.0055 16.5 1.6 2.2 8.2 0.1 2.5 2 0 0 2 2 2 2 Cysteine-rich KTR OrfB_Zn_ribbon PF07282.11 gi|302348063|ref|YP_003815701.1| - 0.0061 16.5 2.4 0.38 10.7 0.1 2.5 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|302348063|ref|YP_003815701.1| - 0.0072 16.4 2.9 4.4 7.5 0.6 3.3 3 0 0 3 3 3 1 Zinc ribbon domain DZR PF12773.7 gi|302348063|ref|YP_003815701.1| - 0.0079 16.2 4.6 1.4 9.0 5.3 2.3 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|302348063|ref|YP_003815701.1| - 0.023 15.4 2.0 0.047 14.4 2.0 1.5 1 1 0 1 1 1 0 zinc-ribbon family zf-NADH-PPase PF09297.11 gi|302348063|ref|YP_003815701.1| - 0.029 14.0 0.5 0.029 14.0 0.5 2.9 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF3268 PF11672.8 gi|302348063|ref|YP_003815701.1| - 0.036 14.4 0.1 0.036 14.4 0.1 2.7 3 1 0 3 3 2 0 zinc-finger-containing domain Zn_Tnp_IS1595 PF12760.7 gi|302348063|ref|YP_003815701.1| - 0.086 12.8 8.8 0.35 10.9 2.8 2.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|302348063|ref|YP_003815701.1| - 0.087 12.4 10.2 2.2 7.8 0.6 3.2 2 1 1 3 3 3 0 TFIIB zinc-binding HypA PF01155.19 gi|302348063|ref|YP_003815701.1| - 0.088 12.8 5.1 0.93 9.5 1.2 3.3 2 1 1 3 3 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NMD3 PF04981.13 gi|302348063|ref|YP_003815701.1| - 0.11 11.9 3.3 0.1 12.0 1.5 1.9 2 1 0 2 2 1 0 NMD3 family A2L_zn_ribbon PF08792.10 gi|302348063|ref|YP_003815701.1| - 0.11 12.2 14.4 1.5 8.6 0.7 3.9 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-ISL3 PF14690.6 gi|302348063|ref|YP_003815701.1| - 0.17 12.6 4.1 8.9 7.1 0.7 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PHD_4 PF16866.5 gi|302348063|ref|YP_003815701.1| - 0.18 11.9 0.9 3.7 7.7 0.0 2.3 2 0 0 2 2 2 0 PHD-finger Prim_Zn_Ribbon PF08273.12 gi|302348063|ref|YP_003815701.1| - 0.21 11.9 13.3 0.16 12.3 4.6 2.7 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase TniQ PF06527.11 gi|302348063|ref|YP_003815701.1| - 0.32 11.7 2.2 18 6.1 2.2 2.5 1 1 0 1 1 1 0 TniQ Nudix_N_2 PF14803.6 gi|302348063|ref|YP_003815701.1| - 0.38 10.7 11.2 0.54 10.2 1.0 3.7 4 0 0 4 4 3 0 Nudix N-terminal Cys_rich_CPXG PF14255.6 gi|302348063|ref|YP_003815701.1| - 0.75 9.7 5.0 12 5.9 0.5 2.9 2 1 0 2 2 2 0 Cysteine-rich CPXCG DUF2318 PF10080.9 gi|302348063|ref|YP_003815701.1| - 0.84 9.8 3.5 2.6 8.2 0.8 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) eIF-5_eIF-2B PF01873.17 gi|302348063|ref|YP_003815701.1| - 1 9.2 3.2 2.5 8.0 0.2 2.4 2 0 0 2 2 2 0 Domain found in IF2B/IF5 DUF3039 PF11238.8 gi|302348063|ref|YP_003815701.1| - 1.3 8.9 8.7 0.073 12.8 1.4 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3039) zf-Sec23_Sec24 PF04810.15 gi|302348063|ref|YP_003815701.1| - 1.3 9.1 8.4 2.7 8.1 0.5 3.7 2 1 1 3 3 3 0 Sec23/Sec24 zinc finger zinc_ribbon_2 PF13240.6 gi|302348063|ref|YP_003815701.1| - 2 8.3 15.0 12 5.8 0.3 4.2 4 0 0 4 4 4 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|302348063|ref|YP_003815701.1| - 2.8 8.3 5.5 9.7 6.5 5.5 1.9 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|302348063|ref|YP_003815701.1| - 3.1 8.0 10.2 0.97 9.6 0.2 3.2 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Vps36-NZF-N PF16988.5 gi|302348063|ref|YP_003815701.1| - 3.8 7.0 5.4 4.6 6.7 0.4 2.4 2 1 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-ribbon_3 PF13248.6 gi|302348063|ref|YP_003815701.1| - 4.7 6.8 13.2 6.1 6.4 4.2 3.6 3 1 1 4 4 4 0 zinc-ribbon domain zf-RING_2 PF13639.6 gi|302348063|ref|YP_003815701.1| - 4.7 7.6 7.9 9.4 6.7 4.3 2.7 2 1 1 3 3 3 0 Ring finger domain zf-RRN7 PF11781.8 gi|302348063|ref|YP_003815701.1| - 8.2 6.2 10.1 6.6 6.5 0.2 3.8 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ETF PF01012.21 gi|302348064|ref|YP_003815702.1| - 1e-34 120.0 0.0 1.4e-34 119.6 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|302348064|ref|YP_003815702.1| - 5.1e-30 103.3 2.3 1.1e-29 102.3 2.3 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ANTAR PF03861.14 gi|302348064|ref|YP_003815702.1| - 0.11 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 ANTAR domain ETF PF01012.21 gi|302348065|ref|YP_003815703.1| - 2.9e-37 128.3 0.0 4e-37 127.9 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Fer4_7 PF12838.7 gi|302348066|ref|YP_003815704.1| - 6.1e-08 33.1 9.0 0.00021 21.8 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|302348066|ref|YP_003815704.1| - 5.3e-06 26.5 5.5 7.2e-06 26.1 5.5 1.4 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_2 PF12797.7 gi|302348066|ref|YP_003815704.1| - 9.4e-06 25.4 14.0 0.0012 18.8 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|302348066|ref|YP_003815704.1| - 9.8e-06 25.2 4.0 9.8e-06 25.2 4.0 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|302348066|ref|YP_003815704.1| - 4.4e-05 23.6 12.6 7.7e-05 22.8 12.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|302348066|ref|YP_003815704.1| - 0.00026 21.0 24.5 0.0019 18.2 1.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|302348066|ref|YP_003815704.1| - 0.0043 17.5 3.2 0.0043 17.5 3.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|302348066|ref|YP_003815704.1| - 0.0087 17.0 1.3 0.0087 17.0 1.3 2.5 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|302348066|ref|YP_003815704.1| - 0.019 15.4 0.7 0.019 15.4 0.7 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|302348066|ref|YP_003815704.1| - 0.028 14.5 3.1 0.028 14.5 3.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.6 gi|302348066|ref|YP_003815704.1| - 0.041 14.0 5.9 0.057 13.5 5.9 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|302348066|ref|YP_003815704.1| - 0.046 14.3 2.3 0.046 14.3 2.3 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|302348066|ref|YP_003815704.1| - 0.071 13.3 14.4 0.71 10.1 14.7 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain DAO PF01266.24 gi|302348067|ref|YP_003815705.1| - 8.3e-13 48.6 7.4 5e-06 26.3 0.9 2.8 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|302348067|ref|YP_003815705.1| - 1.3e-08 34.4 0.6 4e-07 29.6 0.1 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|302348067|ref|YP_003815705.1| - 8.1e-08 32.0 0.2 1.4e-07 31.2 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|302348067|ref|YP_003815705.1| - 1e-07 31.5 0.1 1.8e-06 27.4 0.0 2.3 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|302348067|ref|YP_003815705.1| - 2.1e-07 30.4 0.6 5.5e-07 29.0 0.6 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|302348067|ref|YP_003815705.1| - 3.2e-07 29.8 2.1 2.6e-06 26.8 0.8 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|302348067|ref|YP_003815705.1| - 4.5e-07 30.0 0.4 1.1e-06 28.8 0.4 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|302348067|ref|YP_003815705.1| - 4.9e-07 28.8 0.5 2.4e-06 26.5 0.3 1.8 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|302348067|ref|YP_003815705.1| - 6.4e-06 25.6 0.3 2.3e-05 23.8 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|302348067|ref|YP_003815705.1| - 3e-05 23.3 0.6 0.00012 21.3 0.6 1.9 1 1 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|302348067|ref|YP_003815705.1| - 0.00013 20.9 0.1 0.25 10.2 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|302348067|ref|YP_003815705.1| - 0.0045 16.3 0.5 0.0045 16.3 0.5 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.18 gi|302348067|ref|YP_003815705.1| - 0.011 14.3 0.0 0.18 10.3 0.0 2.1 1 1 1 2 2 2 0 GDP dissociation inhibitor 3HCDH_N PF02737.18 gi|302348067|ref|YP_003815705.1| - 0.082 12.8 0.3 0.14 12.0 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|302348067|ref|YP_003815705.1| - 0.085 12.5 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|302348067|ref|YP_003815705.1| - 0.12 12.9 0.9 0.97 10.0 0.3 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Chlorosome_CsmC PF11098.8 gi|302348067|ref|YP_003815705.1| - 0.13 12.3 0.3 0.33 10.9 0.2 1.7 1 1 1 2 2 2 0 Chlorosome envelope protein C DUF2059 PF09832.9 gi|302348067|ref|YP_003815705.1| - 0.19 11.8 0.1 0.39 10.8 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2059) NAD_binding_9 PF13454.6 gi|302348067|ref|YP_003815705.1| - 0.22 11.5 0.5 1.4 8.9 0.5 2.1 1 1 0 1 1 1 0 FAD-NAD(P)-binding eIF-5_eIF-2B PF01873.17 gi|302348068|ref|YP_003815706.1| - 2.8e-32 111.0 0.0 3.5e-32 110.7 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 BTB_3 PF16017.5 gi|302348068|ref|YP_003815706.1| - 8.1e-05 22.7 0.0 0.00011 22.2 0.0 1.2 1 0 0 1 1 1 1 BTB/POZ domain Lar_restr_allev PF14354.6 gi|302348068|ref|YP_003815706.1| - 0.00084 19.7 0.6 0.0014 19.0 0.6 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-TFIIB PF13453.6 gi|302348068|ref|YP_003815706.1| - 0.0063 15.8 0.5 0.012 15.0 0.5 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger PhnA_Zn_Ribbon PF08274.12 gi|302348068|ref|YP_003815706.1| - 0.014 15.4 1.0 0.088 12.8 1.0 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DpnI PF06044.12 gi|302348068|ref|YP_003815706.1| - 0.045 13.4 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 Dam-replacing family zf-ribbon_3 PF13248.6 gi|302348068|ref|YP_003815706.1| - 0.051 13.0 1.5 0.57 9.7 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|302348068|ref|YP_003815706.1| - 0.062 13.5 0.1 1.3 9.2 0.0 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|302348068|ref|YP_003815706.1| - 0.068 12.9 0.8 6.6 6.6 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|302348068|ref|YP_003815706.1| - 0.077 13.1 0.1 4.2 7.6 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|302348068|ref|YP_003815706.1| - 0.1 12.5 0.5 0.18 11.7 0.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Elf1 PF05129.13 gi|302348068|ref|YP_003815706.1| - 0.11 12.6 0.3 0.17 12.0 0.3 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Rubredoxin_2 PF18073.1 gi|302348068|ref|YP_003815706.1| - 0.11 12.2 1.0 14 5.5 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF35_N PF12172.8 gi|302348068|ref|YP_003815706.1| - 0.14 12.0 2.3 4.1 7.4 0.1 2.7 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.11 gi|302348068|ref|YP_003815706.1| - 0.17 11.5 2.5 2.1 8.1 2.5 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|302348068|ref|YP_003815706.1| - 0.3 10.7 2.4 0.83 9.2 2.4 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding DUF1451 PF07295.11 gi|302348068|ref|YP_003815706.1| - 0.3 11.1 2.9 14 5.7 2.9 2.5 1 1 0 1 1 1 0 Zinc-ribbon containing domain tRNA-synt_2b PF00587.25 gi|302348069|ref|YP_003815707.1| - 9.7e-34 116.9 0.0 1.6e-33 116.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|302348069|ref|YP_003815707.1| - 1.1e-23 83.5 9.1 2.2e-23 82.6 9.1 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain NTPase_1 PF03266.15 gi|302348069|ref|YP_003815707.1| - 0.089 12.7 0.3 0.27 11.1 0.3 1.8 1 0 0 1 1 1 0 NTPase Syntaxin-6_N PF09177.11 gi|302348069|ref|YP_003815707.1| - 0.21 12.2 1.7 0.63 10.6 1.7 1.9 1 0 0 1 1 1 0 Syntaxin 6, N-terminal COG6 PF06419.11 gi|302348069|ref|YP_003815707.1| - 0.34 9.1 4.0 0.46 8.6 4.0 1.1 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 DUF3584 PF12128.8 gi|302348069|ref|YP_003815707.1| - 0.43 8.0 7.1 0.6 7.5 7.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF724 PF05266.14 gi|302348069|ref|YP_003815707.1| - 0.52 10.1 3.8 1.1 9.1 3.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF724) FapA PF03961.13 gi|302348069|ref|YP_003815707.1| - 0.7 8.4 3.3 1 7.9 3.3 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF349 PF03993.12 gi|302348069|ref|YP_003815707.1| - 2.5 8.5 11.1 12 6.3 1.0 2.6 1 1 1 2 2 2 0 Domain of Unknown Function (DUF349) ABC2_membrane_2 PF12679.7 gi|302348070|ref|YP_003815708.1| - 4.4e-18 65.6 34.1 8.2e-18 64.7 34.1 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|302348070|ref|YP_003815708.1| - 2.2e-11 43.5 28.7 3.4e-11 42.8 28.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein Imm8 PF15586.6 gi|302348070|ref|YP_003815708.1| - 0.092 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Immunity protein 8 ABC_tran PF00005.27 gi|302348071|ref|YP_003815709.1| - 1.1e-28 100.5 0.0 1.5e-28 100.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302348071|ref|YP_003815709.1| - 6.7e-15 55.7 0.4 5.8e-09 36.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|302348071|ref|YP_003815709.1| - 0.00033 20.1 0.2 0.39 10.1 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|302348071|ref|YP_003815709.1| - 0.0012 18.6 0.1 0.0021 17.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|302348071|ref|YP_003815709.1| - 0.0014 18.6 0.0 0.029 14.3 0.1 2.1 2 0 0 2 2 2 1 RsgA GTPase MeaB PF03308.16 gi|302348071|ref|YP_003815709.1| - 0.0018 17.3 0.1 0.0026 16.8 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_27 PF13514.6 gi|302348071|ref|YP_003815709.1| - 0.0026 17.4 0.0 0.0043 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|302348071|ref|YP_003815709.1| - 0.0029 18.1 0.1 0.0045 17.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|302348071|ref|YP_003815709.1| - 0.011 15.5 0.0 0.015 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|302348071|ref|YP_003815709.1| - 0.022 14.5 0.0 0.092 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|302348071|ref|YP_003815709.1| - 0.061 12.9 0.1 0.5 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|302348071|ref|YP_003815709.1| - 0.089 13.0 0.1 0.77 9.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain FdtA PF05523.11 gi|302348071|ref|YP_003815709.1| - 0.18 11.5 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 WxcM-like, C-terminal PPS_PS PF02006.16 gi|302348072|ref|YP_003815710.1| - 1.7e-73 245.9 1.1 2.2e-73 245.6 1.1 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase MuF_C PF18819.1 gi|302348072|ref|YP_003815710.1| - 0.014 15.4 0.0 6.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Phage MuF-C-terminal domain TPP_enzyme_M PF00205.22 gi|302348072|ref|YP_003815710.1| - 0.04 13.7 0.1 0.12 12.2 0.1 1.8 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Arabinose_Isome PF02610.15 gi|302348072|ref|YP_003815710.1| - 0.044 13.0 0.1 0.053 12.7 0.1 1.2 1 0 0 1 1 1 0 L-arabinose isomerase COQ9 PF08511.11 gi|302348072|ref|YP_003815710.1| - 0.16 11.8 0.0 18 5.2 0.0 2.7 2 0 0 2 2 2 0 COQ9 GHMP_kinases_N PF00288.26 gi|302348073|ref|YP_003815711.1| - 0.0002 21.5 0.9 0.00046 20.4 0.9 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain NAD_synthase PF02540.17 gi|302348074|ref|YP_003815712.1| - 4.6e-71 238.7 0.0 5.4e-71 238.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase HTH_29 PF13551.6 gi|302348074|ref|YP_003815712.1| - 0.0075 16.3 0.0 0.052 13.6 0.0 2.2 1 1 1 2 2 2 1 Winged helix-turn helix tRNA_Me_trans PF03054.16 gi|302348074|ref|YP_003815712.1| - 0.014 14.2 0.0 0.65 8.7 0.0 2.1 2 0 0 2 2 2 0 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|302348074|ref|YP_003815712.1| - 0.083 12.6 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 PP-loop family HTH_23 PF13384.6 gi|302348074|ref|YP_003815712.1| - 0.098 12.5 0.0 0.64 9.9 0.0 2.3 2 1 0 2 2 2 0 Homeodomain-like domain DFP PF04127.15 gi|302348075|ref|YP_003815713.1| - 1.6e-47 161.7 0.6 9.8e-46 155.9 0.1 2.1 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|302348075|ref|YP_003815713.1| - 4.6e-28 98.0 0.3 9.4e-28 96.9 0.3 1.5 1 0 0 1 1 1 1 Flavoprotein FlpD PF02662.16 gi|302348075|ref|YP_003815713.1| - 0.022 14.7 0.0 0.053 13.5 0.0 1.6 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit Acetyltransf_1 PF00583.25 gi|302348076|ref|YP_003815714.1| - 2.3e-22 79.4 0.1 3.8e-22 78.7 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|302348076|ref|YP_003815714.1| - 3e-15 56.4 0.3 2.3e-14 53.6 0.3 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|302348076|ref|YP_003815714.1| - 6.4e-13 48.8 0.3 6.8e-11 42.2 0.0 2.2 1 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|302348076|ref|YP_003815714.1| - 4.2e-10 40.0 0.2 3.2e-08 33.9 0.0 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|302348076|ref|YP_003815714.1| - 7.3e-09 35.5 0.0 1.3e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|302348076|ref|YP_003815714.1| - 7e-08 32.6 0.1 6.1e-06 26.3 0.0 2.5 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|302348076|ref|YP_003815714.1| - 1.7e-07 31.0 0.0 3.2e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|302348076|ref|YP_003815714.1| - 0.00018 22.2 0.1 0.00054 20.7 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|302348076|ref|YP_003815714.1| - 0.0018 17.8 0.2 0.0022 17.5 0.2 1.3 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_CG PF14542.6 gi|302348076|ref|YP_003815714.1| - 0.03 14.5 0.0 0.057 13.5 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 gi|302348076|ref|YP_003815714.1| - 0.13 12.2 0.0 0.9 9.6 0.0 2.1 1 1 1 2 2 2 0 ESCO1/2 acetyl-transferase PanZ PF12568.8 gi|302348076|ref|YP_003815714.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Alpha_Helical PF18489.1 gi|302348077|ref|YP_003815715.1| - 0.026 14.7 0.7 0.041 14.1 0.5 1.4 1 1 0 1 1 1 0 Alpha helical domain DUF5446 PF17522.2 gi|302348077|ref|YP_003815715.1| - 2.2 8.5 7.3 2.7 8.2 4.4 2.4 2 1 0 2 2 2 0 Family of unknown function (DUF5446) STT3 PF02516.14 gi|302348078|ref|YP_003815716.1| - 1.2e-09 37.7 35.1 1.6e-09 37.3 35.1 1.2 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF4149 PF13664.6 gi|302348078|ref|YP_003815716.1| - 0.074 13.4 0.3 0.074 13.4 0.3 5.6 2 2 2 4 4 4 0 Domain of unknown function (DUF4149) Gemini_AC4_5_2 PF08464.10 gi|302348078|ref|YP_003815716.1| - 0.12 12.3 0.3 0.39 10.7 0.3 1.8 1 0 0 1 1 1 0 Geminivirus AC4/5 conserved region eRF1_2 PF03464.15 gi|302348079|ref|YP_003815717.1| - 1.6e-42 145.0 0.1 3.3e-42 144.0 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|302348079|ref|YP_003815717.1| - 1.5e-19 70.6 0.0 3.6e-18 66.1 0.0 2.7 1 1 0 1 1 1 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|302348079|ref|YP_003815717.1| - 1.1e-14 54.8 0.0 2.8e-14 53.5 0.0 1.6 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|302348079|ref|YP_003815717.1| - 8.5e-10 39.0 0.0 1.4e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 CTP_transf_like PF01467.26 gi|302348080|ref|YP_003815718.1| - 3.5e-12 46.7 0.0 5.6e-12 46.1 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase-like ATP-sulfurylase PF01747.17 gi|302348080|ref|YP_003815718.1| - 0.013 14.9 0.0 2.2 7.7 0.0 2.5 2 1 0 2 2 2 0 ATP-sulfurylase Arm_3 PF16186.5 gi|302348080|ref|YP_003815718.1| - 0.083 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Atypical Arm repeat Peptidase_M50 PF02163.22 gi|302348081|ref|YP_003815719.1| - 3.1e-08 33.2 11.6 6e-05 22.4 4.0 3.1 2 1 0 2 2 2 2 Peptidase family M50 DUF3267 PF11667.8 gi|302348081|ref|YP_003815719.1| - 0.1 12.9 0.1 0.1 12.9 0.1 3.3 3 1 1 4 4 4 0 Putative zincin peptidase BCLP PF12304.8 gi|302348081|ref|YP_003815719.1| - 3.2 7.3 10.3 3.3 7.2 8.3 2.2 1 1 0 1 1 1 0 Beta-casein like protein Stork_head PF10264.9 gi|302348083|ref|YP_003815721.1| - 0.0043 17.2 0.0 2.1 8.6 0.0 2.1 2 0 0 2 2 2 2 Winged helix Storkhead-box1 domain DUF977 PF06163.11 gi|302348083|ref|YP_003815721.1| - 0.017 15.0 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Med1 PF10744.9 gi|302348083|ref|YP_003815721.1| - 0.052 12.6 0.0 0.052 12.6 0.0 1.1 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription subunit 1 DUF2122 PF09895.9 gi|302348084|ref|YP_003815722.1| - 6.1e-31 107.0 0.0 8.1e-31 106.6 0.0 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) tRNA-synt_2b PF00587.25 gi|302348085|ref|YP_003815723.1| - 3.8e-32 111.7 0.0 5.4e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|302348085|ref|YP_003815723.1| - 0.0052 16.9 0.0 0.022 14.9 0.0 2.0 2 1 0 2 2 2 1 Anticodon binding domain EMC3_TMCO1 PF01956.16 gi|302348086|ref|YP_003815724.1| - 0.22 11.2 0.2 0.36 10.5 0.2 1.4 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like PRRSV_Env PF02340.15 gi|302348086|ref|YP_003815724.1| - 4 6.8 7.6 0.18 11.1 2.1 1.5 2 0 0 2 2 2 0 PRRSV putative envelope protein DUF996 PF06195.13 gi|302348086|ref|YP_003815724.1| - 7.7 6.8 12.2 1 9.7 6.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF996) tRNA-synt_1 PF00133.22 gi|302348087|ref|YP_003815725.1| - 2.8e-114 382.6 0.0 6.1e-113 378.2 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|302348087|ref|YP_003815725.1| - 1.9e-25 89.4 0.1 6e-13 48.3 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|302348087|ref|YP_003815725.1| - 9.6e-22 77.6 0.1 1.8e-21 76.7 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA DZR PF12773.7 gi|302348087|ref|YP_003815725.1| - 0.0034 17.4 2.2 1.5 8.9 0.2 3.2 3 0 0 3 3 3 1 Double zinc ribbon tRNA-synt_1_2 PF13603.6 gi|302348087|ref|YP_003815725.1| - 0.0054 16.3 0.0 0.023 14.2 0.0 2.0 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 Nudix_N_2 PF14803.6 gi|302348087|ref|YP_003815725.1| - 0.013 15.4 2.1 3.2 7.8 0.4 2.9 2 1 0 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.6 gi|302348087|ref|YP_003815725.1| - 0.015 15.9 3.2 3.8 8.3 0.0 3.5 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.7 gi|302348087|ref|YP_003815725.1| - 0.042 14.3 3.5 10 6.6 0.1 4.1 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.6 gi|302348087|ref|YP_003815725.1| - 0.12 11.8 5.0 14 5.1 0.0 4.1 4 0 0 4 4 4 0 Transcription factor zinc-finger zf-ACC PF17848.1 gi|302348087|ref|YP_003815725.1| - 0.34 11.0 6.1 8.4 6.6 0.1 3.7 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf-NADH-PPase PF09297.11 gi|302348087|ref|YP_003815725.1| - 0.35 10.6 4.6 2.4 7.9 0.0 3.0 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|302348087|ref|YP_003815725.1| - 0.39 10.2 10.6 3.2 7.3 0.6 4.2 4 0 0 4 4 4 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|302348087|ref|YP_003815725.1| - 0.43 10.7 3.4 34 4.6 0.0 3.5 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|302348087|ref|YP_003815725.1| - 1.1 8.9 3.0 65 3.2 0.0 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding HalOD2 PF18547.1 gi|302348087|ref|YP_003815725.1| - 1.2 9.1 4.6 3.2 7.7 0.1 3.2 3 0 0 3 3 3 0 Halobacterial output domain 2 zinc_ribbon_2 PF13240.6 gi|302348087|ref|YP_003815725.1| - 2.2 8.1 10.6 16 5.4 0.1 3.9 4 0 0 4 4 4 0 zinc-ribbon domain Ldh_1_N PF00056.23 gi|302348088|ref|YP_003815726.1| - 4.5e-41 140.2 0.2 6.4e-41 139.8 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|302348088|ref|YP_003815726.1| - 2.4e-18 66.7 0.0 4.5e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|302348088|ref|YP_003815726.1| - 1e-05 25.2 0.0 2.8e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 gi|302348088|ref|YP_003815726.1| - 0.00042 19.9 1.0 0.0026 17.4 1.0 2.1 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FR47 PF08445.10 gi|302348088|ref|YP_003815726.1| - 0.044 13.8 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein HTH_3 PF01381.22 gi|302348090|ref|YP_003815728.1| - 6.4e-15 55.0 1.0 8.7e-15 54.5 1.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|302348090|ref|YP_003815728.1| - 2.5e-09 37.0 0.1 3.6e-09 36.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|302348090|ref|YP_003815728.1| - 1.8e-08 34.1 0.0 3.5e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|302348090|ref|YP_003815728.1| - 5.3e-08 33.1 0.1 1.1e-07 32.0 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|302348090|ref|YP_003815728.1| - 0.00088 19.2 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|302348090|ref|YP_003815728.1| - 0.0093 15.5 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|302348090|ref|YP_003815728.1| - 0.013 15.3 0.1 0.025 14.4 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain ApoLp-III PF07464.11 gi|302348090|ref|YP_003815728.1| - 0.017 15.2 0.1 0.021 14.9 0.1 1.1 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) HTH_26 PF13443.6 gi|302348090|ref|YP_003815728.1| - 0.019 15.4 0.1 0.032 14.7 0.1 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain WYL_3 PF18488.1 gi|302348090|ref|YP_003815728.1| - 0.072 13.5 0.1 0.13 12.7 0.1 1.3 1 0 0 1 1 1 0 WYL domain HTH_11 PF08279.12 gi|302348090|ref|YP_003815728.1| - 0.12 12.3 0.1 0.49 10.4 0.1 1.9 2 0 0 2 2 2 0 HTH domain MMR_HSR1 PF01926.23 gi|302348091|ref|YP_003815729.1| - 2e-18 66.5 0.1 5.6e-18 65.1 0.1 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|302348091|ref|YP_003815729.1| - 1e-14 54.9 4.2 1e-14 54.9 4.2 2.4 2 0 0 2 2 2 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|302348091|ref|YP_003815729.1| - 4.4e-12 46.5 0.1 1.3e-11 45.1 0.1 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.18 gi|302348091|ref|YP_003815729.1| - 9.2e-11 41.5 0.6 2.1e-10 40.4 0.6 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|302348091|ref|YP_003815729.1| - 3.1e-09 36.7 0.9 1e-08 35.0 0.5 1.9 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|302348091|ref|YP_003815729.1| - 1.2e-08 34.6 0.5 2.1e-08 33.8 0.5 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Arf PF00025.21 gi|302348091|ref|YP_003815729.1| - 3e-07 30.0 0.1 5.8e-07 29.1 0.1 1.6 1 0 0 1 1 1 1 ADP-ribosylation factor family PduV-EutP PF10662.9 gi|302348091|ref|YP_003815729.1| - 5.5e-07 29.4 0.3 2e-06 27.6 0.3 1.9 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.23 gi|302348091|ref|YP_003815729.1| - 1.5e-05 25.1 0.1 0.0043 17.1 0.0 2.6 1 1 1 2 2 2 1 Dynamin family Ras PF00071.22 gi|302348091|ref|YP_003815729.1| - 4.3e-05 23.2 0.1 7.8e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Ras family MMR_HSR1_Xtn PF16897.5 gi|302348091|ref|YP_003815729.1| - 0.00021 21.3 0.3 0.0011 19.0 0.2 2.2 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain NOG1 PF06858.14 gi|302348091|ref|YP_003815729.1| - 0.0024 17.6 0.1 0.0071 16.1 0.1 1.8 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) Roc PF08477.13 gi|302348091|ref|YP_003815729.1| - 0.0066 16.7 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase AAA_16 PF13191.6 gi|302348091|ref|YP_003815729.1| - 0.039 14.3 0.1 0.11 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|302348091|ref|YP_003815729.1| - 0.05 14.1 0.2 0.13 12.8 0.1 1.9 1 1 1 2 2 2 0 ABC transporter AAA_28 PF13521.6 gi|302348091|ref|YP_003815729.1| - 0.076 13.3 0.2 0.57 10.4 0.0 2.4 1 1 2 3 3 3 0 AAA domain CLP1_P PF16575.5 gi|302348091|ref|YP_003815729.1| - 0.13 12.1 0.0 0.51 10.1 0.0 2.0 2 1 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_23 PF13476.6 gi|302348091|ref|YP_003815729.1| - 0.87 10.1 4.5 1.5 9.3 1.2 2.5 1 1 1 2 2 2 0 AAA domain Trm56 PF01994.16 gi|302348092|ref|YP_003815730.1| - 7.8e-47 158.1 0.0 9.5e-47 157.8 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.17 gi|302348093|ref|YP_003815731.1| - 1e-11 44.6 1.1 1.6e-11 44.0 0.4 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|302348093|ref|YP_003815731.1| - 0.0048 16.4 0.5 0.011 15.2 0.5 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Prefoldin_2 PF01920.20 gi|302348093|ref|YP_003815731.1| - 0.019 14.9 0.6 0.069 13.1 0.0 2.0 2 0 0 2 2 2 0 Prefoldin subunit DUF674 PF05056.12 gi|302348093|ref|YP_003815731.1| - 0.059 12.2 0.2 0.085 11.7 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF674) zf-ACC PF17848.1 gi|302348093|ref|YP_003815731.1| - 0.15 12.2 1.0 10 6.3 0.1 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DNA_methylase PF00145.17 gi|302348094|ref|YP_003815732.1| - 2.2e-49 168.6 0.0 5.3e-34 118.0 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|302348094|ref|YP_003815732.1| - 2.4e-05 24.0 0.0 3.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase AAA PF00004.29 gi|302348095|ref|YP_003815733.1| - 1.6e-43 148.3 0.2 4e-43 147.0 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|302348095|ref|YP_003815733.1| - 2.4e-16 59.2 0.1 5.7e-16 58.0 0.1 1.7 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|302348095|ref|YP_003815733.1| - 1.5e-14 53.7 1.8 1.7e-14 53.5 0.4 1.9 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|302348095|ref|YP_003815733.1| - 2e-07 31.3 0.0 5.9e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Prot_ATP_OB_N PF17758.1 gi|302348095|ref|YP_003815733.1| - 5.1e-07 29.2 1.6 8.1e-07 28.6 0.4 1.9 2 0 0 2 2 2 1 Proteasomal ATPase OB N-terminal domain AAA_16 PF13191.6 gi|302348095|ref|YP_003815733.1| - 7.8e-07 29.6 0.1 0.00037 20.9 0.1 2.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_5 PF07728.14 gi|302348095|ref|YP_003815733.1| - 9.3e-06 25.7 0.2 5.5e-05 23.2 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|302348095|ref|YP_003815733.1| - 2.2e-05 24.2 0.0 5.8e-05 22.9 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|302348095|ref|YP_003815733.1| - 0.00035 20.9 0.2 0.014 15.7 0.1 2.3 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|302348095|ref|YP_003815733.1| - 0.0049 17.2 0.0 0.0095 16.3 0.0 1.5 1 0 0 1 1 1 1 RNA helicase DUF815 PF05673.13 gi|302348095|ref|YP_003815733.1| - 0.005 16.0 0.0 0.0096 15.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|302348095|ref|YP_003815733.1| - 0.0072 16.9 0.0 0.017 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|302348095|ref|YP_003815733.1| - 0.0073 15.7 0.0 0.018 14.5 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|302348095|ref|YP_003815733.1| - 0.0079 16.4 0.0 0.026 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|302348095|ref|YP_003815733.1| - 0.008 15.4 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|302348095|ref|YP_003815733.1| - 0.013 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_3 PF07726.11 gi|302348095|ref|YP_003815733.1| - 0.013 15.4 0.0 0.027 14.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|302348095|ref|YP_003815733.1| - 0.014 15.7 0.0 0.034 14.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain Torsin PF06309.11 gi|302348095|ref|YP_003815733.1| - 0.015 15.4 0.1 0.12 12.5 0.0 2.3 3 0 0 3 3 2 0 Torsin ABC_tran PF00005.27 gi|302348095|ref|YP_003815733.1| - 0.016 15.7 0.0 0.3 11.6 0.0 2.5 2 1 0 2 2 2 0 ABC transporter AAA_24 PF13479.6 gi|302348095|ref|YP_003815733.1| - 0.021 14.6 0.1 0.058 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|302348095|ref|YP_003815733.1| - 0.023 14.2 0.0 0.063 12.8 0.0 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|302348095|ref|YP_003815733.1| - 0.027 14.5 0.0 0.057 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|302348095|ref|YP_003815733.1| - 0.058 13.1 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_25 PF13481.6 gi|302348095|ref|YP_003815733.1| - 0.058 13.0 0.3 0.33 10.5 0.1 2.3 1 1 2 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|302348095|ref|YP_003815733.1| - 0.062 12.6 0.1 0.15 11.3 0.0 1.8 2 0 0 2 2 1 0 Zeta toxin Sigma54_activ_2 PF14532.6 gi|302348095|ref|YP_003815733.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|302348095|ref|YP_003815733.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|302348095|ref|YP_003815733.1| - 0.16 11.6 0.1 0.32 10.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain bZIP_1 PF00170.21 gi|302348095|ref|YP_003815733.1| - 0.44 10.7 2.1 1.1 9.4 2.1 1.7 1 0 0 1 1 1 0 bZIP transcription factor KorB PF08535.10 gi|302348096|ref|YP_003815734.1| - 0.0039 17.2 0.2 0.048 13.7 0.0 2.7 2 1 2 4 4 4 1 KorB domain MarR_2 PF12802.7 gi|302348096|ref|YP_003815734.1| - 0.0048 16.8 0.0 0.05 13.5 0.0 2.4 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|302348096|ref|YP_003815734.1| - 0.0089 16.4 0.0 6.5 7.2 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_45 PF14947.6 gi|302348096|ref|YP_003815734.1| - 0.011 15.7 0.1 0.036 14.1 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix TrmB PF01978.19 gi|302348096|ref|YP_003815734.1| - 0.017 15.0 0.6 0.76 9.7 0.1 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.11 gi|302348096|ref|YP_003815734.1| - 0.04 14.6 0.0 0.086 13.5 0.0 1.5 1 1 0 1 1 1 0 Replication protein A C terminal Na_Ca_ex_C PF16494.5 gi|302348096|ref|YP_003815734.1| - 0.042 14.3 0.1 0.077 13.5 0.1 1.5 1 0 0 1 1 1 0 C-terminal extension of sodium/calcium exchanger domain HTH_Crp_2 PF13545.6 gi|302348096|ref|YP_003815734.1| - 0.043 13.8 0.0 12 6.0 0.0 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|302348096|ref|YP_003815734.1| - 0.1 12.5 0.0 0.3 11.0 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HrcA_DNA-bdg PF03444.15 gi|302348096|ref|YP_003815734.1| - 0.12 12.0 0.0 0.85 9.3 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_45 PF14947.6 gi|302348097|ref|YP_003815735.1| - 0.00074 19.4 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|302348097|ref|YP_003815735.1| - 0.0013 18.5 0.2 0.0044 16.9 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|302348097|ref|YP_003815735.1| - 0.0021 17.6 1.3 0.0081 15.7 0.2 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|302348097|ref|YP_003815735.1| - 0.0029 17.4 0.1 0.011 15.6 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain RP-C PF03428.13 gi|302348097|ref|YP_003815735.1| - 0.0051 16.5 0.1 0.012 15.2 0.1 1.5 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_5 PF01022.20 gi|302348097|ref|YP_003815735.1| - 0.014 15.3 1.2 0.12 12.2 0.2 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|302348097|ref|YP_003815735.1| - 0.022 15.1 0.0 0.035 14.5 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor PaaX PF07848.12 gi|302348097|ref|YP_003815735.1| - 0.088 13.0 0.1 0.18 12.0 0.1 1.5 1 0 0 1 1 1 0 PaaX-like protein HemN_C PF06969.16 gi|302348097|ref|YP_003815735.1| - 0.092 12.8 0.1 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 HemN C-terminal domain T2SSE PF00437.20 gi|302348099|ref|YP_003815737.1| - 2.4e-49 167.8 0.0 3.4e-49 167.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|302348099|ref|YP_003815737.1| - 0.00016 22.3 0.0 0.00039 21.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|302348099|ref|YP_003815737.1| - 0.0002 21.9 0.0 0.00048 20.7 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|302348099|ref|YP_003815737.1| - 0.00023 20.8 0.0 0.00053 19.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Parvo_NS1 PF01057.17 gi|302348099|ref|YP_003815737.1| - 0.00047 19.3 0.0 0.00079 18.6 0.0 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_16 PF13191.6 gi|302348099|ref|YP_003815737.1| - 0.00071 20.0 0.0 0.0014 19.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|302348099|ref|YP_003815737.1| - 0.0013 19.0 0.0 0.0046 17.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|302348099|ref|YP_003815737.1| - 0.0042 16.9 0.0 0.03 14.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_7 PF12775.7 gi|302348099|ref|YP_003815737.1| - 0.0045 16.5 0.0 0.012 15.2 0.0 1.6 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|302348099|ref|YP_003815737.1| - 0.0058 16.4 0.0 0.047 13.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|302348099|ref|YP_003815737.1| - 0.0086 15.5 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|302348099|ref|YP_003815737.1| - 0.019 15.2 0.1 0.062 13.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain ATPase_2 PF01637.18 gi|302348099|ref|YP_003815737.1| - 0.022 14.7 0.0 0.048 13.6 0.0 1.6 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|302348099|ref|YP_003815737.1| - 0.024 14.8 0.0 0.076 13.2 0.0 1.9 2 0 0 2 2 1 0 AAA domain RsgA_GTPase PF03193.16 gi|302348099|ref|YP_003815737.1| - 0.025 14.5 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|302348099|ref|YP_003815737.1| - 0.044 14.2 0.0 0.11 12.9 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|302348099|ref|YP_003815737.1| - 0.049 13.2 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|302348099|ref|YP_003815737.1| - 0.05 13.3 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|302348099|ref|YP_003815737.1| - 0.081 12.9 0.1 0.5 10.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|302348099|ref|YP_003815737.1| - 0.091 12.9 0.1 0.28 11.3 0.0 1.8 2 0 0 2 2 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|302348099|ref|YP_003815737.1| - 0.18 11.6 0.0 0.42 10.4 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TsaE PF02367.17 gi|302348099|ref|YP_003815737.1| - 0.2 11.7 0.8 1 9.4 0.0 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|302348099|ref|YP_003815737.1| - 0.2 12.0 0.0 0.43 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase T2SSF PF00482.23 gi|302348100|ref|YP_003815738.1| - 2e-05 24.5 0.8 2e-05 24.5 0.8 2.7 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F OPT PF03169.15 gi|302348100|ref|YP_003815738.1| - 0.0048 15.6 1.1 0.0048 15.6 1.1 2.1 2 0 0 2 2 2 1 OPT oligopeptide transporter protein T2SSF PF00482.23 gi|302348101|ref|YP_003815739.1| - 6.6e-09 35.8 1.9 6.6e-09 35.8 1.9 1.8 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF2235 PF09994.9 gi|302348102|ref|YP_003815740.1| - 0.095 12.0 0.1 0.12 11.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized alpha/beta hydrolase domain (DUF2235) OTCace PF00185.24 gi|302348105|ref|YP_003815743.1| - 3e-58 196.3 0.0 4.1e-58 195.9 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|302348105|ref|YP_003815743.1| - 1e-47 161.9 0.0 1.5e-47 161.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YppF PF14178.6 gi|302348105|ref|YP_003815743.1| - 0.16 11.8 0.1 0.43 10.5 0.1 1.6 1 0 0 1 1 1 0 YppF-like protein TGT_C2 PF14810.6 gi|302348106|ref|YP_003815744.1| - 6.3e-14 51.9 0.0 9.6e-14 51.3 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|302348106|ref|YP_003815744.1| - 0.0003 20.7 0.1 0.00049 20.0 0.1 1.5 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|302348106|ref|YP_003815744.1| - 0.0083 16.4 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 UPF0113 PUA domain PAC2 PF09754.9 gi|302348107|ref|YP_003815745.1| - 1e-29 104.1 0.0 1.1e-29 103.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT PF01702.18 gi|302348108|ref|YP_003815746.1| - 6.8e-69 232.7 0.0 9e-69 232.3 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|302348108|ref|YP_003815746.1| - 0.15 11.9 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5591) Lsm_C PF14894.6 gi|302348109|ref|YP_003815747.1| - 4.7e-27 93.5 0.2 9.5e-27 92.6 0.2 1.5 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.22 gi|302348109|ref|YP_003815747.1| - 7.5e-06 25.6 0.0 1.2e-05 24.9 0.0 1.5 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|302348109|ref|YP_003815747.1| - 1.5e-05 25.0 0.0 2.3e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|302348109|ref|YP_003815747.1| - 0.069 13.3 0.0 0.51 10.5 0.0 2.3 2 1 0 2 2 2 0 RimP C-terminal SH3 domain 4HBT_2 PF13279.6 gi|302348110|ref|YP_003815748.1| - 1.8e-13 51.1 0.0 2.2e-13 50.8 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|302348110|ref|YP_003815748.1| - 6e-08 32.9 0.0 8.9e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily AA_kinase PF00696.28 gi|302348111|ref|YP_003815749.1| - 1.2e-31 110.2 0.0 1.7e-31 109.7 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family SIS_2 PF13580.6 gi|302348111|ref|YP_003815749.1| - 0.029 14.4 0.0 0.066 13.2 0.0 1.6 1 0 0 1 1 1 0 SIS domain Transketolase_N PF00456.21 gi|302348111|ref|YP_003815749.1| - 0.071 12.1 0.0 0.12 11.3 0.0 1.4 1 0 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain B5 PF03484.15 gi|302348111|ref|YP_003815749.1| - 0.14 12.4 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetase B5 domain Pribosyltran PF00156.27 gi|302348112|ref|YP_003815750.1| - 4.1e-26 91.4 0.0 9.7e-26 90.2 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosyl transferase domain ThiS PF02597.20 gi|302348112|ref|YP_003815750.1| - 0.0018 18.8 0.0 0.0033 18.0 0.0 1.4 1 0 0 1 1 1 1 ThiS family AMP-binding PF00501.28 gi|302348112|ref|YP_003815750.1| - 0.039 12.6 0.0 0.061 11.9 0.0 1.2 1 0 0 1 1 1 0 AMP-binding enzyme Ribosomal_S17e PF00833.18 gi|302348113|ref|YP_003815751.1| - 5.6e-18 65.0 0.5 5.9e-18 65.0 0.5 1.0 1 0 0 1 1 1 1 Ribosomal S17 Cpn60_TCP1 PF00118.24 gi|302348114|ref|YP_003815752.1| - 2.2e-184 613.7 11.7 2.6e-184 613.4 11.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Fe-ADH_2 PF13685.6 gi|302348115|ref|YP_003815753.1| - 3e-64 217.1 0.0 3.9e-64 216.8 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|302348115|ref|YP_003815753.1| - 9.6e-28 97.0 0.2 2.9e-24 85.6 0.1 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|302348115|ref|YP_003815753.1| - 3.7e-12 46.0 0.0 1.1e-05 24.7 0.0 3.0 2 1 0 2 2 2 2 3-dehydroquinate synthase Peripla_BP_6 PF13458.6 gi|302348115|ref|YP_003815753.1| - 0.082 12.6 0.1 0.2 11.3 0.0 1.6 2 0 0 2 2 2 0 Periplasmic binding protein DAGK_cat PF00781.24 gi|302348115|ref|YP_003815753.1| - 0.12 11.9 0.0 0.8 9.3 0.0 2.0 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Proteasome PF00227.26 gi|302348116|ref|YP_003815754.1| - 5.1e-53 179.4 1.0 5.9e-53 179.2 1.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.8 gi|302348117|ref|YP_003815755.1| - 8.5e-26 90.4 0.0 2e-25 89.2 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|302348117|ref|YP_003815755.1| - 3.6e-19 68.5 2.5 7.8e-19 67.4 0.7 2.5 2 0 0 2 2 2 1 KH domain RMMBL PF07521.12 gi|302348117|ref|YP_003815755.1| - 1.1e-15 57.2 0.0 4.2e-15 55.4 0.0 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|302348117|ref|YP_003815755.1| - 5.7e-11 42.2 0.0 1e-09 38.1 0.0 2.3 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|302348117|ref|YP_003815755.1| - 3.3e-09 37.0 0.4 1.4e-07 31.7 0.4 2.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|302348117|ref|YP_003815755.1| - 2.7e-07 30.3 0.0 6.6e-07 29.0 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|302348117|ref|YP_003815755.1| - 2e-05 24.5 0.0 0.00012 22.0 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|302348117|ref|YP_003815755.1| - 0.087 12.7 0.3 0.37 10.7 0.0 2.1 2 0 0 2 2 2 0 KH domain Nre_N PF04894.12 gi|302348118|ref|YP_003815756.1| - 5.3e-98 328.2 0.0 7.1e-98 327.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|302348118|ref|YP_003815756.1| - 8.4e-31 106.1 0.0 1.5e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal FUR PF01475.19 gi|302348119|ref|YP_003815757.1| - 2e-16 60.2 0.0 2.5e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Serpin PF00079.20 gi|302348119|ref|YP_003815757.1| - 0.09 12.1 0.0 0.091 12.0 0.0 1.2 1 0 0 1 1 1 0 Serpin (serine protease inhibitor) TrmB PF01978.19 gi|302348119|ref|YP_003815757.1| - 0.1 12.5 0.1 1.1 9.2 0.0 2.5 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB 4HBT PF03061.22 gi|302348120|ref|YP_003815758.1| - 7.3e-19 67.9 0.2 3.3e-12 46.6 0.2 2.4 2 0 0 2 2 2 2 Thioesterase superfamily Stathmin PF00836.19 gi|302348120|ref|YP_003815758.1| - 0.022 14.7 0.1 0.022 14.7 0.1 1.7 2 0 0 2 2 2 0 Stathmin family Thiolase_N PF00108.23 gi|302348121|ref|YP_003815759.1| - 1.8e-73 247.1 0.0 2.3e-73 246.8 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|302348121|ref|YP_003815759.1| - 9e-40 135.2 0.1 7.1e-38 129.0 0.0 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|302348121|ref|YP_003815759.1| - 0.0028 17.3 5.2 0.015 14.9 3.7 2.4 2 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|302348121|ref|YP_003815759.1| - 0.068 13.0 2.0 0.3 10.9 1.2 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF5417 PF17438.2 gi|302348121|ref|YP_003815759.1| - 0.095 13.0 0.0 0.25 11.7 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5417) Meth_synt_1 PF08267.12 gi|302348122|ref|YP_003815760.1| - 5.5e-18 65.5 0.0 8.6e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|302348122|ref|YP_003815760.1| - 2.7e-16 59.7 0.0 7e-16 58.4 0.0 1.6 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain URO-D PF01208.17 gi|302348122|ref|YP_003815760.1| - 0.0066 15.6 0.1 0.015 14.5 0.0 1.5 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_2 PF01717.18 gi|302348123|ref|YP_003815761.1| - 5.8e-71 239.4 0.0 6.8e-71 239.2 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|302348123|ref|YP_003815761.1| - 7.6e-14 51.9 0.0 1.4e-11 44.5 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain SHOCT PF09851.9 gi|302348123|ref|YP_003815761.1| - 0.00011 21.8 0.7 0.00022 20.9 0.7 1.5 1 0 0 1 1 1 1 Short C-terminal domain URO-D PF01208.17 gi|302348123|ref|YP_003815761.1| - 0.00055 19.2 0.0 0.0013 18.0 0.0 1.5 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) AIRS_C PF02769.22 gi|302348124|ref|YP_003815762.1| - 9.6e-19 68.0 0.1 1.6e-18 67.3 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|302348124|ref|YP_003815762.1| - 4.8e-13 49.6 0.4 1.1e-12 48.4 0.4 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF853 PF05872.12 gi|302348125|ref|YP_003815763.1| - 7.6e-14 51.2 0.1 8.8e-06 24.6 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|302348125|ref|YP_003815763.1| - 4.3e-10 40.1 0.0 1e-09 38.8 0.0 1.7 2 0 0 2 2 2 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|302348125|ref|YP_003815763.1| - 1.5e-06 27.4 0.0 4.2e-05 22.6 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.29 gi|302348125|ref|YP_003815763.1| - 1e-05 25.9 0.2 0.65 10.4 0.0 3.5 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|302348125|ref|YP_003815763.1| - 2.4e-05 24.6 0.7 0.024 14.9 0.1 2.7 3 0 0 3 3 2 2 AAA domain AAA_16 PF13191.6 gi|302348125|ref|YP_003815763.1| - 0.00066 20.1 2.1 0.029 14.8 0.8 3.1 2 1 0 2 2 2 1 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|302348125|ref|YP_003815763.1| - 0.0021 17.5 1.8 0.0075 15.6 0.1 2.5 3 0 0 3 3 3 1 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|302348125|ref|YP_003815763.1| - 0.0036 16.3 0.0 1.1 8.1 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_7 PF12775.7 gi|302348125|ref|YP_003815763.1| - 0.0073 15.8 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region T2SSE PF00437.20 gi|302348125|ref|YP_003815763.1| - 0.01 14.9 0.1 0.021 13.9 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|302348125|ref|YP_003815763.1| - 0.021 15.1 1.1 0.08 13.3 0.4 2.1 2 1 0 2 2 2 0 AAA domain Zot PF05707.12 gi|302348125|ref|YP_003815763.1| - 0.06 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) ABC_tran PF00005.27 gi|302348125|ref|YP_003815763.1| - 0.073 13.6 0.8 0.15 12.6 0.1 1.9 2 0 0 2 2 1 0 ABC transporter DUF1617 PF07761.12 gi|302348125|ref|YP_003815763.1| - 0.08 13.0 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1617) NB-ARC PF00931.22 gi|302348125|ref|YP_003815763.1| - 0.2 10.8 0.0 0.35 10.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|302348125|ref|YP_003815763.1| - 0.29 11.6 0.4 0.54 10.7 0.4 1.3 1 0 0 1 1 1 0 AAA domain Oxidored_molyb PF00174.19 gi|302348126|ref|YP_003815764.1| - 4.6e-20 71.9 0.0 6.9e-20 71.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Methyltransf_11 PF08241.12 gi|302348127|ref|YP_003815765.1| - 1.7e-18 67.1 0.1 2.6e-18 66.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|302348127|ref|YP_003815765.1| - 3.6e-18 66.0 0.1 5.6e-18 65.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|302348127|ref|YP_003815765.1| - 4e-17 62.4 0.0 4.6e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|302348127|ref|YP_003815765.1| - 1.6e-13 50.5 0.0 2e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|302348127|ref|YP_003815765.1| - 1e-12 48.6 0.0 1.9e-12 47.8 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.14 gi|302348127|ref|YP_003815765.1| - 2.6e-11 43.4 0.0 3.7e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|302348127|ref|YP_003815765.1| - 1e-09 38.4 0.0 1.4e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|302348127|ref|YP_003815765.1| - 3.8e-08 33.1 0.1 5.2e-08 32.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|302348127|ref|YP_003815765.1| - 1.4e-07 31.5 0.2 3.8e-07 30.1 0.1 1.8 2 1 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|302348127|ref|YP_003815765.1| - 1.6e-07 31.3 0.0 1.8e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|302348127|ref|YP_003815765.1| - 1.4e-06 27.9 0.0 2.5e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|302348127|ref|YP_003815765.1| - 1.5e-06 27.7 0.0 1.9e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain FtsJ PF01728.19 gi|302348127|ref|YP_003815765.1| - 1.9e-06 28.1 0.0 9.3e-06 25.9 0.0 1.9 1 1 0 1 1 1 1 FtsJ-like methyltransferase DUF938 PF06080.12 gi|302348127|ref|YP_003815765.1| - 1.4e-05 24.9 0.0 2.5e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF938) RrnaAD PF00398.20 gi|302348127|ref|YP_003815765.1| - 1.8e-05 24.0 0.0 2.3e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltr_RsmB-F PF01189.17 gi|302348127|ref|YP_003815765.1| - 2.1e-05 24.3 0.0 6.1e-05 22.7 0.0 1.6 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F GCD14 PF08704.10 gi|302348127|ref|YP_003815765.1| - 0.00014 21.6 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit GidB PF02527.15 gi|302348127|ref|YP_003815765.1| - 0.00015 21.2 0.0 0.00019 20.8 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.20 gi|302348127|ref|YP_003815765.1| - 0.00026 20.4 0.0 0.00036 19.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase ADH_zinc_N PF00107.26 gi|302348127|ref|YP_003815765.1| - 0.00038 20.4 0.1 0.0007 19.6 0.1 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_18 PF12847.7 gi|302348127|ref|YP_003815765.1| - 0.00051 20.0 0.0 0.00082 19.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|302348127|ref|YP_003815765.1| - 0.034 14.0 0.0 0.18 11.6 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase TehB PF03848.14 gi|302348127|ref|YP_003815765.1| - 0.039 13.4 0.0 0.048 13.1 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB DOT1 PF08123.13 gi|302348127|ref|YP_003815765.1| - 0.039 13.5 0.0 0.075 12.6 0.0 1.4 2 0 0 2 2 2 0 Histone methylation protein DOT1 Methyltransf_16 PF10294.9 gi|302348127|ref|YP_003815765.1| - 0.072 12.8 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase DUF3966 PF13110.6 gi|302348128|ref|YP_003815766.1| - 0.07 13.0 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3966) DUF1454 PF07305.12 gi|302348129|ref|YP_003815767.1| - 0.0057 16.1 0.0 0.0057 16.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1454) AA_permease PF00324.21 gi|302348130|ref|YP_003815768.1| - 4.3e-08 32.2 48.6 8.4e-08 31.2 48.6 1.5 1 1 0 1 1 1 1 Amino acid permease FMN_dh PF01070.18 gi|302348131|ref|YP_003815769.1| - 9.3e-24 84.1 2.5 4.5e-18 65.4 1.6 2.3 1 1 0 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|302348131|ref|YP_003815769.1| - 2.9e-05 23.4 0.1 6.3e-05 22.3 0.1 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase IMPDH PF00478.25 gi|302348131|ref|YP_003815769.1| - 0.0022 17.0 4.2 0.0039 16.2 0.6 2.7 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain polyprenyl_synt PF00348.17 gi|302348132|ref|YP_003815770.1| - 1.2e-70 237.5 0.0 1.6e-70 237.1 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Ligase_CoA PF00549.19 gi|302348132|ref|YP_003815770.1| - 0.096 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 CoA-ligase tRNA-synt_1c PF00749.21 gi|302348133|ref|YP_003815771.1| - 9.9e-70 234.9 0.0 2e-69 233.9 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|302348133|ref|YP_003815771.1| - 2e-16 60.4 0.0 4.7e-16 59.2 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain LRRNT_2 PF08263.12 gi|302348133|ref|YP_003815771.1| - 0.1 12.9 0.0 0.55 10.6 0.0 2.2 2 0 0 2 2 2 0 Leucine rich repeat N-terminal domain Glyco_hydro_15 PF00723.21 gi|302348135|ref|YP_003815773.1| - 2.1e-22 79.6 0.6 2.7e-18 66.0 1.3 2.3 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF608 PF04685.13 gi|302348135|ref|YP_003815773.1| - 0.00011 21.5 0.3 0.00021 20.6 0.3 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region GCHY-1 PF02649.14 gi|302348136|ref|YP_003815774.1| - 1.4e-44 152.6 0.0 1.6e-44 152.4 0.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 tRNA_synthFbeta PF17759.1 gi|302348137|ref|YP_003815775.1| - 2.1e-40 138.5 0.0 3.1e-40 137.9 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|302348137|ref|YP_003815775.1| - 2.3e-18 66.2 0.1 1.3e-14 54.2 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|302348137|ref|YP_003815775.1| - 1.5e-07 31.3 0.0 2.7e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|302348137|ref|YP_003815775.1| - 7e-05 23.0 0.0 0.097 12.9 0.0 2.6 2 0 0 2 2 2 2 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|302348138|ref|YP_003815776.1| - 1e-78 264.2 0.0 1.3e-78 263.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|302348138|ref|YP_003815776.1| - 0.00068 19.1 0.0 0.0077 15.7 0.0 2.1 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|302348138|ref|YP_003815776.1| - 0.045 12.8 0.1 2.1 7.3 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) DUF2797 PF10977.8 gi|302348139|ref|YP_003815777.1| - 5.4e-07 29.8 0.0 7.2e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) PNP_UDP_1 PF01048.20 gi|302348140|ref|YP_003815778.1| - 1.2e-39 135.9 0.1 1.4e-39 135.7 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily tRNA-synt_1d PF00750.19 gi|302348141|ref|YP_003815779.1| - 1.7e-31 109.5 0.0 2.1e-18 66.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|302348141|ref|YP_003815779.1| - 2e-21 76.3 0.8 3.7e-20 72.3 0.0 3.1 4 1 0 4 4 4 1 DALR anticodon binding domain tRNA-synt_1g PF09334.11 gi|302348141|ref|YP_003815779.1| - 0.068 11.9 0.0 0.22 10.2 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (M) VWA_CoxE PF05762.14 gi|302348142|ref|YP_003815780.1| - 2.1e-12 46.9 2.5 4e-12 46.0 2.2 1.5 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|302348142|ref|YP_003815780.1| - 0.045 14.4 1.3 0.18 12.5 0.2 2.7 3 1 0 3 3 3 0 von Willebrand factor type A domain Reductase_C PF14759.6 gi|302348142|ref|YP_003815780.1| - 0.077 13.6 0.1 0.53 10.9 0.1 2.4 2 0 0 2 2 2 0 Reductase C-terminal AAA_5 PF07728.14 gi|302348143|ref|YP_003815781.1| - 1.5e-16 60.7 0.0 2.5e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|302348143|ref|YP_003815781.1| - 0.00089 19.1 0.0 0.01 15.7 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|302348143|ref|YP_003815781.1| - 0.0013 19.3 0.0 0.0021 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|302348143|ref|YP_003815781.1| - 0.0017 18.8 0.2 0.015 15.7 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|302348143|ref|YP_003815781.1| - 0.0037 17.1 0.2 0.0081 16.0 0.2 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_16 PF13191.6 gi|302348143|ref|YP_003815781.1| - 0.0066 16.8 0.0 0.015 15.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|302348143|ref|YP_003815781.1| - 0.011 15.4 0.0 3.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_2 PF07724.14 gi|302348143|ref|YP_003815781.1| - 0.016 15.3 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_30 PF13604.6 gi|302348143|ref|YP_003815781.1| - 0.043 13.5 0.0 0.073 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|302348143|ref|YP_003815781.1| - 0.053 12.9 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|302348143|ref|YP_003815781.1| - 0.096 12.2 0.0 0.29 10.6 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region TIP49 PF06068.13 gi|302348143|ref|YP_003815781.1| - 0.15 11.2 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain PDDEXK_1 PF12705.7 gi|302348144|ref|YP_003815782.1| - 6.1e-09 36.2 0.7 1.7e-08 34.7 0.7 1.7 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|302348144|ref|YP_003815782.1| - 1.6e-06 28.3 0.0 2e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 CBS PF00571.28 gi|302348144|ref|YP_003815782.1| - 0.12 12.9 0.1 0.25 11.8 0.1 1.5 1 0 0 1 1 1 0 CBS domain tRNA-synt_1 PF00133.22 gi|302348145|ref|YP_003815783.1| - 2.2e-179 597.6 0.0 2.9e-179 597.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|302348145|ref|YP_003815783.1| - 7.1e-32 110.5 0.2 1.4e-31 109.5 0.2 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|302348145|ref|YP_003815783.1| - 1.7e-23 83.1 0.2 2.1e-07 30.0 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|302348145|ref|YP_003815783.1| - 6.4e-08 32.3 0.0 1.5e-05 24.5 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|302348145|ref|YP_003815783.1| - 7.3e-06 25.1 0.0 1.7e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|302348145|ref|YP_003815783.1| - 0.0044 16.6 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 zf-TFIIB PF13453.6 gi|302348145|ref|YP_003815783.1| - 0.02 14.2 2.0 7.2 6.0 0.0 3.5 3 0 0 3 3 3 0 Transcription factor zinc-finger Rpr2 PF04032.16 gi|302348145|ref|YP_003815783.1| - 0.047 14.0 1.4 0.51 10.7 0.0 3.2 4 0 0 4 4 4 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Mu-like_Com PF10122.9 gi|302348145|ref|YP_003815783.1| - 0.21 11.0 2.0 0.63 9.5 0.2 2.4 2 0 0 2 2 2 0 Mu-like prophage protein Com Zn-ribbon_8 PF09723.10 gi|302348145|ref|YP_003815783.1| - 0.61 10.3 4.0 3.7 7.7 1.2 3.0 2 1 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.7 gi|302348145|ref|YP_003815783.1| - 1.8 9.0 5.5 33 5.0 0.1 4.1 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 OAS1_C PF10421.9 gi|302348146|ref|YP_003815784.1| - 0.094 12.2 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus Radical_SAM PF04055.21 gi|302348147|ref|YP_003815785.1| - 7.1e-25 88.3 0.0 9.7e-25 87.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|302348147|ref|YP_003815785.1| - 0.006 16.7 0.0 0.02 15.0 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain ATP_bind_3 PF01171.20 gi|302348148|ref|YP_003815786.1| - 7.5e-10 38.9 0.0 1.2e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 PP-loop family OrfB_Zn_ribbon PF07282.11 gi|302348148|ref|YP_003815786.1| - 0.0025 17.7 5.3 0.17 11.9 0.0 3.0 3 0 0 3 3 3 2 Putative transposase DNA-binding domain NAD_synthase PF02540.17 gi|302348148|ref|YP_003815786.1| - 0.0072 15.5 0.0 0.0094 15.1 0.0 1.2 1 0 0 1 1 1 1 NAD synthase zn-ribbon_14 PF16503.5 gi|302348148|ref|YP_003815786.1| - 0.018 14.5 0.6 0.018 14.5 0.6 3.1 4 0 0 4 4 4 0 Zinc-ribbon DZR PF12773.7 gi|302348148|ref|YP_003815786.1| - 0.024 14.7 8.4 0.086 12.9 0.2 3.1 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|302348148|ref|YP_003815786.1| - 1.7 8.1 16.3 0.64 9.5 1.0 4.3 5 0 0 5 5 5 0 zinc-ribbon domain NMD3 PF04981.13 gi|302348148|ref|YP_003815786.1| - 1.8 8.0 8.8 2.5 7.5 0.4 2.8 3 0 0 3 3 3 0 NMD3 family zf-dskA_traR PF01258.17 gi|302348148|ref|YP_003815786.1| - 5 7.2 10.8 1.2 9.1 0.5 3.3 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger NUDIX PF00293.28 gi|302348149|ref|YP_003815787.1| - 3.1e-18 66.1 0.2 4.2e-18 65.7 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain DUF3536 PF12055.8 gi|302348150|ref|YP_003815788.1| - 9e-78 261.4 0.0 1.8e-77 260.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3536) Glyco_hydro_57 PF03065.15 gi|302348150|ref|YP_003815788.1| - 5.1e-21 75.2 0.1 1.2e-20 74.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolase family 57 CPBP PF02517.16 gi|302348151|ref|YP_003815789.1| - 1.4e-08 35.0 20.5 3.6e-07 30.5 20.5 2.6 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease Aminotran_5 PF00266.19 gi|302348152|ref|YP_003815790.1| - 5.3e-05 22.3 0.0 9.1e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|302348152|ref|YP_003815790.1| - 6.2e-05 22.0 0.0 0.0003 19.7 0.0 1.9 2 1 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_1_2 PF00155.21 gi|302348152|ref|YP_003815790.1| - 0.053 12.7 0.0 0.11 11.6 0.0 1.5 2 0 0 2 2 2 0 Aminotransferase class I and II GDC-P PF02347.16 gi|302348153|ref|YP_003815791.1| - 7.4e-98 328.2 0.0 8.7e-98 328.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein BRE PF06113.12 gi|302348153|ref|YP_003815791.1| - 0.048 12.5 0.2 0.33 9.8 0.0 2.0 1 1 1 2 2 2 0 Brain and reproductive organ-expressed protein (BRE) Phage_r1t_holin PF16945.5 gi|302348153|ref|YP_003815791.1| - 0.12 12.6 0.1 15 5.9 0.1 2.6 2 0 0 2 2 2 0 Putative lactococcus lactis phage r1t holin Glyco_hydro_15 PF00723.21 gi|302348154|ref|YP_003815792.1| - 4.2e-07 29.1 0.2 0.00013 20.9 0.2 2.4 3 0 0 3 3 3 2 Glycosyl hydrolases family 15 TrmB PF01978.19 gi|302348155|ref|YP_003815793.1| - 0.0053 16.6 0.0 0.0091 15.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|302348155|ref|YP_003815793.1| - 0.061 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|302348155|ref|YP_003815793.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain AAA_lid_8 PF17868.1 gi|302348157|ref|YP_003815795.1| - 0.078 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 AAA lid domain Lipoprotein_18 PF06804.11 gi|302348157|ref|YP_003815795.1| - 0.081 12.0 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 NlpB/DapX lipoprotein MarR PF01047.22 gi|302348158|ref|YP_003815796.1| - 1.6e-06 27.9 0.0 2.3e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|302348158|ref|YP_003815796.1| - 5e-06 26.3 0.0 6.9e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|302348158|ref|YP_003815796.1| - 1.3e-05 25.3 0.0 1.8e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|302348158|ref|YP_003815796.1| - 1.3e-05 24.6 0.0 1.9e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|302348158|ref|YP_003815796.1| - 6.2e-05 22.9 0.0 9.4e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|302348158|ref|YP_003815796.1| - 6.6e-05 22.7 0.1 0.00011 22.0 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|302348158|ref|YP_003815796.1| - 0.00046 20.1 0.0 0.00066 19.6 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Ribosomal_S25 PF03297.15 gi|302348158|ref|YP_003815796.1| - 0.00066 19.8 0.0 0.00085 19.5 0.0 1.2 1 0 0 1 1 1 1 S25 ribosomal protein HTH_Tnp_ISL3 PF13542.6 gi|302348158|ref|YP_003815796.1| - 0.001 18.4 0.0 0.0019 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 LexA_DNA_bind PF01726.16 gi|302348158|ref|YP_003815796.1| - 0.0016 18.2 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain HTH_11 PF08279.12 gi|302348158|ref|YP_003815796.1| - 0.0025 17.7 0.0 0.0042 17.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_10 PF04967.12 gi|302348158|ref|YP_003815796.1| - 0.0026 17.5 0.0 0.0041 16.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_DeoR PF08220.12 gi|302348158|ref|YP_003815796.1| - 0.0059 16.3 0.0 0.009 15.7 0.0 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|302348158|ref|YP_003815796.1| - 0.006 16.4 0.0 0.0094 15.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|302348158|ref|YP_003815796.1| - 0.012 16.0 0.0 0.019 15.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.21 gi|302348158|ref|YP_003815796.1| - 0.013 15.1 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|302348158|ref|YP_003815796.1| - 0.017 14.9 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain RepL PF05732.11 gi|302348158|ref|YP_003815796.1| - 0.021 14.2 0.0 0.024 14.1 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_20 PF12840.7 gi|302348158|ref|YP_003815796.1| - 0.023 14.8 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HHH_5 PF14520.6 gi|302348158|ref|YP_003815796.1| - 0.045 14.3 0.0 0.06 14.0 0.0 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain EAP30 PF04157.16 gi|302348158|ref|YP_003815796.1| - 0.049 12.9 0.0 0.058 12.7 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_23 PF13384.6 gi|302348158|ref|YP_003815796.1| - 0.052 13.4 0.0 0.087 12.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_27 PF13463.6 gi|302348158|ref|YP_003815796.1| - 0.063 13.8 0.0 0.08 13.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|302348158|ref|YP_003815796.1| - 0.068 13.3 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain HHH PF00633.23 gi|302348158|ref|YP_003815796.1| - 0.074 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif RNA_pol_Rpc34 PF05158.12 gi|302348158|ref|YP_003815796.1| - 0.1 12.0 0.0 0.12 11.7 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit DUF4423 PF14394.6 gi|302348158|ref|YP_003815796.1| - 0.16 11.7 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Aminotran_3 PF00202.21 gi|302348159|ref|YP_003815797.1| - 7.9e-131 436.5 0.0 9.4e-131 436.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|302348159|ref|YP_003815797.1| - 0.018 14.2 0.0 0.048 12.8 0.0 1.7 2 0 0 2 2 2 0 Aminotransferase class I and II DUF1778 PF08681.11 gi|302348159|ref|YP_003815797.1| - 0.049 13.6 0.1 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1778) NTP_transferase PF00483.23 gi|302348161|ref|YP_003815799.1| - 2.2e-32 112.6 0.0 2.8e-32 112.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|302348161|ref|YP_003815799.1| - 4.3e-07 29.4 17.3 0.0036 17.0 4.6 4.2 2 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|302348161|ref|YP_003815799.1| - 0.00011 20.5 1.9 0.00017 19.9 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|302348161|ref|YP_003815799.1| - 0.0026 16.8 4.3 0.1 11.5 1.1 2.3 1 1 1 2 2 2 2 L-fucokinase NTP_transf_3 PF12804.7 gi|302348161|ref|YP_003815799.1| - 0.13 12.6 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|302348161|ref|YP_003815799.1| - 0.42 10.4 8.9 1.1 9.1 2.2 3.3 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase Glyco_hydro_57 PF03065.15 gi|302348162|ref|YP_003815800.1| - 1.5e-59 201.8 0.0 2.3e-59 201.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|302348162|ref|YP_003815800.1| - 0.0019 18.1 0.0 0.0034 17.3 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase YdjC PF04794.12 gi|302348162|ref|YP_003815800.1| - 0.17 11.9 0.0 0.26 11.2 0.0 1.2 1 0 0 1 1 1 0 YdjC-like protein Radical_SAM PF04055.21 gi|302348162|ref|YP_003815800.1| - 0.19 12.1 0.0 0.31 11.4 0.0 1.3 1 0 0 1 1 1 0 Radical SAM superfamily Glyco_transf_5 PF08323.11 gi|302348163|ref|YP_003815801.1| - 4.4e-34 118.3 0.0 6.2e-34 117.8 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|302348163|ref|YP_003815801.1| - 8.9e-23 80.7 0.0 2.8e-22 79.1 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|302348163|ref|YP_003815801.1| - 2.8e-14 53.7 0.1 7.7e-14 52.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|302348163|ref|YP_003815801.1| - 9.2e-10 38.8 3.1 6.8e-09 36.0 1.3 2.6 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|302348163|ref|YP_003815801.1| - 6.7e-06 26.6 0.1 9.1e-05 22.9 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|302348163|ref|YP_003815801.1| - 0.00012 22.4 0.0 0.00043 20.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 AP_endonuc_2 PF01261.24 gi|302348163|ref|YP_003815801.1| - 0.035 13.6 0.0 2.9 7.3 0.0 2.5 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Glyco_trans_4_2 PF13477.6 gi|302348163|ref|YP_003815801.1| - 0.17 11.9 0.0 11 6.1 0.0 2.4 2 0 0 2 2 2 0 Glycosyl transferase 4-like tRNA-synt_2c PF01411.19 gi|302348165|ref|YP_003815803.1| - 4e-08 32.2 0.0 5.3e-08 31.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|302348165|ref|YP_003815803.1| - 1.7e-07 31.2 0.3 1.7e-07 31.2 0.3 1.7 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain Aminotran_1_2 PF00155.21 gi|302348166|ref|YP_003815804.1| - 2e-47 162.1 0.0 2.4e-47 161.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|302348166|ref|YP_003815804.1| - 4.2e-10 39.0 0.0 5.8e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 gi|302348166|ref|YP_003815804.1| - 9e-05 21.9 0.0 0.00016 21.1 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|302348166|ref|YP_003815804.1| - 0.00012 21.5 0.0 0.00024 20.5 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|302348166|ref|YP_003815804.1| - 0.001 18.1 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|302348166|ref|YP_003815804.1| - 0.12 10.9 0.0 0.18 10.3 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Epimerase PF01370.21 gi|302348167|ref|YP_003815805.1| - 1.3e-52 178.6 0.0 1.6e-52 178.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|302348167|ref|YP_003815805.1| - 1.5e-44 152.7 0.0 1.8e-44 152.5 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|302348167|ref|YP_003815805.1| - 1.2e-19 70.4 0.0 1.6e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|302348167|ref|YP_003815805.1| - 4.2e-13 49.0 0.0 5.6e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|302348167|ref|YP_003815805.1| - 7.8e-13 48.7 0.0 1.2e-12 48.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|302348167|ref|YP_003815805.1| - 2.6e-10 39.9 0.0 2.9e-09 36.5 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|302348167|ref|YP_003815805.1| - 1.3e-07 31.0 0.9 0.01 15.0 0.1 2.8 2 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|302348167|ref|YP_003815805.1| - 2.9e-05 23.6 0.1 0.00043 19.8 0.0 2.2 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|302348167|ref|YP_003815805.1| - 9.3e-05 22.1 0.0 0.00041 20.0 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.18 gi|302348167|ref|YP_003815805.1| - 0.0017 18.6 0.0 0.0034 17.6 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|302348167|ref|YP_003815805.1| - 0.0065 16.7 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Pyr_redox PF00070.27 gi|302348167|ref|YP_003815805.1| - 0.069 13.7 0.3 0.32 11.6 0.2 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase KR PF08659.10 gi|302348167|ref|YP_003815805.1| - 0.1 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 KR domain F420_oxidored PF03807.17 gi|302348167|ref|YP_003815805.1| - 0.13 12.9 0.0 0.37 11.4 0.0 1.8 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent PDDEXK_4 PF14281.6 gi|302348168|ref|YP_003815806.1| - 0.05 13.8 1.0 0.1 12.7 1.0 1.5 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF2070 PF09843.9 gi|302348168|ref|YP_003815806.1| - 4.1 5.6 13.9 0.07 11.4 3.3 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|302348169|ref|YP_003815807.1| - 2.7e-36 125.1 0.0 3.6e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302348169|ref|YP_003815807.1| - 1.1e-12 48.4 2.1 2.4e-06 27.6 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_ATPase PF09818.9 gi|302348169|ref|YP_003815807.1| - 1.5e-06 27.3 0.7 0.0037 16.1 0.1 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class SMC_N PF02463.19 gi|302348169|ref|YP_003815807.1| - 1.8e-06 27.6 0.0 1e-05 25.1 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|302348169|ref|YP_003815807.1| - 1.4e-05 25.4 0.1 6.9e-05 23.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|302348169|ref|YP_003815807.1| - 0.00014 22.5 0.1 0.00023 21.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|302348169|ref|YP_003815807.1| - 0.00039 20.1 0.0 0.00084 19.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|302348169|ref|YP_003815807.1| - 0.0005 20.0 0.1 0.0015 18.5 0.1 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|302348169|ref|YP_003815807.1| - 0.0017 18.0 0.0 0.0032 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|302348169|ref|YP_003815807.1| - 0.002 17.7 0.0 0.1 12.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|302348169|ref|YP_003815807.1| - 0.0025 18.0 0.1 0.081 13.2 0.1 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|302348169|ref|YP_003815807.1| - 0.0032 17.2 0.6 0.017 14.8 0.2 2.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|302348169|ref|YP_003815807.1| - 0.0044 17.4 0.1 0.01 16.2 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 gi|302348169|ref|YP_003815807.1| - 0.0047 16.5 0.0 0.0064 16.1 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|302348169|ref|YP_003815807.1| - 0.021 14.6 0.0 0.058 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|302348169|ref|YP_003815807.1| - 0.03 14.8 0.0 0.29 11.5 0.0 2.4 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|302348169|ref|YP_003815807.1| - 0.042 13.5 0.1 0.086 12.5 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.6 gi|302348169|ref|YP_003815807.1| - 0.049 13.7 0.0 0.69 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|302348169|ref|YP_003815807.1| - 0.05 11.1 0.2 0.066 10.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|302348169|ref|YP_003815807.1| - 0.056 12.1 0.0 0.081 11.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|302348169|ref|YP_003815807.1| - 0.1 12.8 0.0 0.16 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF3490 PF11995.8 gi|302348169|ref|YP_003815807.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3490) ATPase PF06745.13 gi|302348169|ref|YP_003815807.1| - 0.12 11.7 0.1 13 5.1 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_15 PF13175.6 gi|302348169|ref|YP_003815807.1| - 0.21 11.2 0.2 3.3 7.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|302348169|ref|YP_003815807.1| - 0.23 10.3 0.0 1.1 8.1 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain BPD_transp_1 PF00528.22 gi|302348170|ref|YP_003815808.1| - 5.5e-16 58.8 14.6 5.5e-16 58.8 14.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|302348171|ref|YP_003815809.1| - 2e-26 93.2 0.6 2.8e-26 92.7 0.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF2345 PF10106.9 gi|302348171|ref|YP_003815809.1| - 0.03 14.2 1.0 0.046 13.6 1.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2345) B277 PF17623.2 gi|302348171|ref|YP_003815809.1| - 0.17 11.0 6.1 0.31 10.1 6.1 1.4 1 0 0 1 1 1 0 Domain of unknown function RHH_1 PF01402.21 gi|302348172|ref|YP_003815810.1| - 8e-09 35.1 0.7 1.1e-08 34.6 0.7 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|302348172|ref|YP_003815810.1| - 0.011 15.7 0.9 0.019 14.9 0.9 1.6 1 1 0 1 1 1 0 Ribbon-helix-helix domain Proton_antipo_M PF00361.20 gi|302348173|ref|YP_003815811.1| - 2.6e-36 125.3 33.3 6.4e-36 124.0 33.3 1.7 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|302348174|ref|YP_003815812.1| - 1.6e-42 145.7 49.9 3.6e-38 131.4 36.6 4.2 3 2 1 4 4 4 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|302348174|ref|YP_003815812.1| - 3.8e-15 55.7 4.0 3.8e-15 55.7 4.0 4.0 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus UPF0697 PF15117.6 gi|302348174|ref|YP_003815812.1| - 0.04 14.0 0.1 0.16 12.0 0.1 2.0 1 0 0 1 1 1 0 Uncharacterised protein family UPF0697 Proton_antipo_M PF00361.20 gi|302348175|ref|YP_003815813.1| - 1.2e-60 205.2 30.0 1.2e-60 205.2 30.0 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|302348175|ref|YP_003815813.1| - 3.4e-05 23.8 3.5 6.7e-05 22.9 0.1 3.3 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|302348176|ref|YP_003815814.1| - 4.7e-08 32.6 11.4 8.9e-08 31.7 11.4 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4418 PF14387.6 gi|302348176|ref|YP_003815814.1| - 3.6 7.8 10.7 54 4.0 11.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4418) Oxidored_q3 PF00499.20 gi|302348177|ref|YP_003815815.1| - 2.3e-09 37.1 17.3 3.3e-09 36.6 17.3 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF5337 PF17272.2 gi|302348177|ref|YP_003815815.1| - 4.9 7.1 9.2 0.18 11.7 0.9 2.5 1 1 1 2 2 2 0 Family of unknown function (DUF5337) Fer4 PF00037.27 gi|302348178|ref|YP_003815816.1| - 3.1e-15 55.3 13.6 1.2e-09 37.6 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|302348178|ref|YP_003815816.1| - 2.7e-12 46.6 19.4 1.4e-08 34.7 11.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|302348178|ref|YP_003815816.1| - 1.2e-10 41.8 11.4 2.1e-10 41.0 11.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|302348178|ref|YP_003815816.1| - 6.9e-09 35.4 16.1 1.2e-05 25.1 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|302348178|ref|YP_003815816.1| - 7.9e-09 35.6 9.2 2e-08 34.3 9.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|302348178|ref|YP_003815816.1| - 1.2e-08 35.7 20.0 3.3e-06 27.9 12.3 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|302348178|ref|YP_003815816.1| - 4.3e-08 32.8 12.4 0.00043 20.2 3.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|302348178|ref|YP_003815816.1| - 3.2e-07 30.4 10.0 8.4e-07 29.0 10.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|302348178|ref|YP_003815816.1| - 6.4e-07 29.4 10.5 0.0028 18.1 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|302348178|ref|YP_003815816.1| - 6.5e-06 26.5 19.1 6.8e-05 23.2 10.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|302348178|ref|YP_003815816.1| - 8.2e-05 23.1 11.1 0.0081 16.7 0.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|302348178|ref|YP_003815816.1| - 0.0014 19.1 11.7 0.26 11.8 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|302348178|ref|YP_003815816.1| - 0.0018 18.4 10.3 0.011 15.9 0.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|302348178|ref|YP_003815816.1| - 0.0027 18.4 7.0 0.33 11.7 1.4 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|302348178|ref|YP_003815816.1| - 0.003 18.4 16.0 0.013 16.4 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Redoxin PF08534.10 gi|302348178|ref|YP_003815816.1| - 0.012 15.3 0.2 0.018 14.8 0.2 1.4 1 0 0 1 1 1 0 Redoxin Fer4_22 PF17179.4 gi|302348178|ref|YP_003815816.1| - 0.084 13.7 12.9 1.1 10.2 3.1 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|302348178|ref|YP_003815816.1| - 1.4 9.1 4.4 3 8.0 3.5 1.9 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S NADHdh PF00146.21 gi|302348179|ref|YP_003815817.1| - 1.3e-79 267.6 24.2 1.6e-79 267.3 24.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|302348180|ref|YP_003815818.1| - 8.5e-89 297.2 0.0 1.2e-88 296.8 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|302348180|ref|YP_003815818.1| - 0.057 12.3 0.0 0.1 11.5 0.0 1.4 1 0 0 1 1 1 0 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|302348181|ref|YP_003815819.1| - 8.9e-33 113.5 0.1 1.2e-32 113.1 0.1 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|302348182|ref|YP_003815820.1| - 2.4e-21 75.9 0.1 4.1e-21 75.2 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TB PF00683.17 gi|302348182|ref|YP_003815820.1| - 0.07 12.9 1.5 0.26 11.1 0.6 2.2 2 0 0 2 2 2 0 TB domain Oxidored_q4 PF00507.19 gi|302348183|ref|YP_003815821.1| - 3.1e-06 27.2 0.4 4.1e-06 26.9 0.4 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 OppC_N PF12911.7 gi|302348183|ref|YP_003815821.1| - 2 8.4 6.5 2.3 8.2 0.2 2.7 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C Prefoldin_2 PF01920.20 gi|302348184|ref|YP_003815822.1| - 2.7e-22 78.7 8.4 3e-22 78.6 8.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit T3SchapCesA PF11439.8 gi|302348184|ref|YP_003815822.1| - 0.03 14.5 1.4 0.12 12.5 0.1 2.1 2 0 0 2 2 2 0 Type III secretion system filament chaperone CesA Tropomyosin_1 PF12718.7 gi|302348184|ref|YP_003815822.1| - 0.045 13.9 5.2 0.43 10.7 2.7 2.0 2 0 0 2 2 2 0 Tropomyosin like DUF3086 PF11285.8 gi|302348184|ref|YP_003815822.1| - 0.059 12.5 0.9 0.11 11.6 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) CdvA PF18822.1 gi|302348184|ref|YP_003815822.1| - 0.084 12.7 6.1 0.39 10.6 2.0 2.1 2 0 0 2 2 2 0 CdvA-like coiled-coil domain YojJ PF10372.9 gi|302348184|ref|YP_003815822.1| - 0.094 12.8 1.3 0.29 11.2 0.5 1.9 2 0 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus Filo_VP35 PF02097.15 gi|302348184|ref|YP_003815822.1| - 0.1 11.6 0.1 0.15 11.1 0.1 1.3 1 1 0 1 1 1 0 Filoviridae VP35 Lpp-LpqN PF10738.9 gi|302348184|ref|YP_003815822.1| - 0.13 11.8 0.1 0.21 11.0 0.0 1.4 2 0 0 2 2 2 0 Probable lipoprotein LpqN DUF4140 PF13600.6 gi|302348184|ref|YP_003815822.1| - 0.18 12.3 1.8 3.2 8.2 0.2 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4164 PF13747.6 gi|302348184|ref|YP_003815822.1| - 0.22 11.8 4.7 2 8.7 2.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Prefoldin PF02996.17 gi|302348184|ref|YP_003815822.1| - 0.38 10.7 6.5 4.5 7.2 0.1 2.2 1 1 1 2 2 2 0 Prefoldin subunit TRPM_tetra PF16519.5 gi|302348184|ref|YP_003815822.1| - 0.57 10.3 4.4 0.43 10.7 1.4 1.9 2 0 0 2 2 2 0 Tetramerisation domain of TRPM FlaC_arch PF05377.11 gi|302348184|ref|YP_003815822.1| - 0.69 10.4 6.8 2.1 8.8 3.2 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DHH PF01368.20 gi|302348185|ref|YP_003815823.1| - 9.4e-15 54.7 0.0 2e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|302348185|ref|YP_003815823.1| - 1.1e-07 32.3 1.1 2.6e-07 31.1 1.1 1.8 1 1 0 1 1 1 1 DHHA1 domain ERCC4 PF02732.15 gi|302348186|ref|YP_003815824.1| - 1.1e-22 80.9 0.0 1.6e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|302348186|ref|YP_003815824.1| - 2.9e-11 43.8 0.2 6.5e-11 42.7 0.2 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|302348186|ref|YP_003815824.1| - 3.3e-11 42.4 0.1 3.7e-06 26.5 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|302348186|ref|YP_003815824.1| - 1.4e-09 37.9 0.1 2.6e-09 37.0 0.1 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|302348186|ref|YP_003815824.1| - 0.00043 20.6 0.0 1.5 9.2 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|302348186|ref|YP_003815824.1| - 0.00052 20.2 0.1 0.3 11.4 0.1 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|302348186|ref|YP_003815824.1| - 0.00078 19.6 0.0 0.0085 16.4 0.0 2.4 2 0 0 2 2 2 1 IMS family HHH motif 5_3_exonuc PF01367.20 gi|302348186|ref|YP_003815824.1| - 0.00081 19.9 0.0 0.004 17.7 0.0 2.0 1 1 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold Herpes_LP PF03363.13 gi|302348186|ref|YP_003815824.1| - 0.044 13.6 0.0 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus leader protein HhH-GPD PF00730.25 gi|302348186|ref|YP_003815824.1| - 0.045 14.2 0.1 0.17 12.4 0.0 1.8 2 0 0 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein DUF3701 PF12482.8 gi|302348186|ref|YP_003815824.1| - 0.14 12.2 0.3 14 5.8 0.0 2.7 2 1 1 3 3 3 0 Phage integrase protein polyprenyl_synt PF00348.17 gi|302348187|ref|YP_003815825.1| - 4.6e-35 120.9 0.0 6.3e-35 120.5 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase H_PPase PF03030.16 gi|302348187|ref|YP_003815825.1| - 0.11 11.1 0.3 1.1 7.8 0.1 2.0 1 1 1 2 2 2 0 Inorganic H+ pyrophosphatase Peptidase_S7 PF00949.21 gi|302348188|ref|YP_003815826.1| - 0.022 14.6 0.0 0.036 13.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease GTP_EFTU PF00009.27 gi|302348189|ref|YP_003815827.1| - 3.2e-61 206.3 0.3 4.5e-61 205.8 0.3 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|302348189|ref|YP_003815827.1| - 9.8e-31 106.1 0.0 3e-30 104.5 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|302348189|ref|YP_003815827.1| - 1.2e-22 79.7 0.0 2.9e-22 78.6 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|302348189|ref|YP_003815827.1| - 3e-20 72.0 0.0 7.5e-20 70.8 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|302348189|ref|YP_003815827.1| - 1.2e-12 48.0 0.2 2.7e-12 46.9 0.2 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|302348189|ref|YP_003815827.1| - 6.3e-05 23.0 0.1 0.00014 21.9 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|302348189|ref|YP_003815827.1| - 0.031 13.9 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 Ras family SRPRB PF09439.10 gi|302348189|ref|YP_003815827.1| - 0.14 11.6 0.0 0.59 9.5 0.0 1.8 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit DUF371 PF04027.13 gi|302348190|ref|YP_003815828.1| - 7.3e-48 161.9 0.1 8.4e-48 161.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PCMT PF01135.19 gi|302348191|ref|YP_003815829.1| - 7.9e-76 254.5 0.1 9.1e-76 254.3 0.1 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|302348191|ref|YP_003815829.1| - 1.8e-07 31.1 0.0 2.6e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|302348191|ref|YP_003815829.1| - 2.1e-07 30.8 0.0 2.9e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|302348191|ref|YP_003815829.1| - 2.7e-05 23.4 0.0 4.3e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_25 PF13649.6 gi|302348191|ref|YP_003815829.1| - 6.4e-05 23.6 0.0 0.00011 22.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|302348191|ref|YP_003815829.1| - 7.7e-05 21.9 0.0 0.0001 21.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.6 gi|302348191|ref|YP_003815829.1| - 0.0023 18.9 0.0 0.0041 18.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|302348191|ref|YP_003815829.1| - 0.0046 16.1 0.1 0.0071 15.5 0.1 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_11 PF08241.12 gi|302348191|ref|YP_003815829.1| - 0.009 16.6 0.0 0.015 15.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|302348191|ref|YP_003815829.1| - 0.039 13.2 0.0 0.054 12.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|302348191|ref|YP_003815829.1| - 0.043 13.8 0.0 0.066 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|302348191|ref|YP_003815829.1| - 0.071 12.8 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_32 PF13679.6 gi|302348191|ref|YP_003815829.1| - 0.085 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|302348191|ref|YP_003815829.1| - 0.2 11.0 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|302348191|ref|YP_003815829.1| - 0.22 11.3 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain tRNA-synt_2b PF00587.25 gi|302348192|ref|YP_003815830.1| - 3.2e-25 89.1 0.0 4.4e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|302348192|ref|YP_003815830.1| - 6.9e-21 74.2 0.0 1.6e-20 73.0 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|302348192|ref|YP_003815830.1| - 3.8e-15 55.9 0.1 1.2e-14 54.3 0.1 1.8 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal Rad50_zn_hook PF04423.14 gi|302348192|ref|YP_003815830.1| - 0.23 11.3 1.0 0.86 9.5 0.7 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif ATP-synt_C PF00137.21 gi|302348193|ref|YP_003815831.1| - 2.7e-17 62.8 29.2 2.3e-15 56.7 19.2 2.1 2 0 0 2 2 2 2 ATP synthase subunit C Yip1 PF04893.17 gi|302348193|ref|YP_003815831.1| - 0.71 9.6 14.3 0.83 9.4 14.3 1.1 1 0 0 1 1 1 0 Yip1 domain dUTPase PF00692.19 gi|302348194|ref|YP_003815832.1| - 3.2e-16 59.2 0.0 4.1e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|302348194|ref|YP_003815832.1| - 8.6e-08 31.4 0.0 6e-06 25.3 0.0 2.9 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) AOC_like PF18678.1 gi|302348194|ref|YP_003815832.1| - 0.072 12.7 0.1 3.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Allene oxide cyclase barrel like domain DUF1614 PF07758.11 gi|302348195|ref|YP_003815833.1| - 9.3e-48 162.5 14.8 9.3e-48 162.5 14.8 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) Met_10 PF02475.16 gi|302348196|ref|YP_003815834.1| - 3e-37 128.3 0.0 5.6e-37 127.4 0.0 1.4 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|302348196|ref|YP_003815834.1| - 1.6e-05 25.5 0.0 3.8e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|302348196|ref|YP_003815834.1| - 3.6e-05 23.6 0.0 5.1e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|302348196|ref|YP_003815834.1| - 0.00087 18.6 0.0 0.0014 17.9 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|302348196|ref|YP_003815834.1| - 0.0018 17.9 0.1 0.0042 16.8 0.0 1.7 2 1 0 2 2 2 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|302348196|ref|YP_003815834.1| - 0.0035 16.8 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Trm5_N PF18093.1 gi|302348196|ref|YP_003815834.1| - 0.084 12.8 0.1 8.9 6.3 0.1 2.4 2 0 0 2 2 2 0 tRNA methyltransferase 5 N-terminal domain Methyltransf_23 PF13489.6 gi|302348196|ref|YP_003815834.1| - 0.21 11.4 0.0 0.33 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NAD_kinase PF01513.21 gi|302348198|ref|YP_003815836.1| - 7e-36 123.9 0.3 1.2e-35 123.1 0.3 1.5 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|302348198|ref|YP_003815836.1| - 0.15 11.7 0.1 0.43 10.2 0.0 1.7 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain PIN_6 PF17146.4 gi|302348199|ref|YP_003815837.1| - 5.7e-15 55.6 0.4 8.3e-15 55.1 0.4 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease Glyco_trans_4_4 PF13579.6 gi|302348199|ref|YP_003815837.1| - 0.038 14.4 0.7 0.099 13.1 0.1 1.9 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_trans_4_5 PF16994.5 gi|302348199|ref|YP_003815837.1| - 0.064 12.9 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl-transferase family 4 NYN_YacP PF05991.11 gi|302348199|ref|YP_003815837.1| - 0.068 13.1 0.1 0.15 12.0 0.0 1.6 1 1 1 2 2 2 0 YacP-like NYN domain PIN_5 PF08745.11 gi|302348199|ref|YP_003815837.1| - 0.13 11.7 1.9 2.9 7.3 0.7 2.1 1 1 1 2 2 2 0 PINc domain ribonuclease UPF0004 PF00919.20 gi|302348200|ref|YP_003815838.1| - 2.6e-24 85.1 0.0 4.6e-24 84.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|302348200|ref|YP_003815838.1| - 1.2e-21 77.8 0.0 4.3e-21 76.0 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.20 gi|302348200|ref|YP_003815838.1| - 0.00088 19.2 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|302348200|ref|YP_003815838.1| - 0.0026 17.9 0.0 0.0063 16.7 0.0 1.7 1 0 0 1 1 1 1 TRAM domain P21-Arc PF04062.14 gi|302348200|ref|YP_003815838.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.5 2 0 0 2 2 2 0 ARP2/3 complex ARPC3 (21 kDa) subunit Endonuc_Holl PF10107.9 gi|302348201|ref|YP_003815839.1| - 3.7e-39 134.2 0.2 4.4e-39 133.9 0.2 1.1 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase HK97-gp10_like PF04883.12 gi|302348201|ref|YP_003815839.1| - 0.0094 16.9 0.1 0.018 16.0 0.0 1.5 2 0 0 2 2 2 1 Bacteriophage HK97-gp10, putative tail-component VRR_NUC PF08774.11 gi|302348201|ref|YP_003815839.1| - 0.019 15.1 0.2 0.036 14.1 0.1 1.5 2 0 0 2 2 2 0 VRR-NUC domain CTP_synth_N PF06418.14 gi|302348202|ref|YP_003815840.1| - 2.4e-120 400.8 0.2 3.3e-120 400.4 0.2 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|302348202|ref|YP_003815840.1| - 2.9e-46 157.7 0.0 5.4e-46 156.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|302348202|ref|YP_003815840.1| - 9.1e-10 38.6 0.0 5.6e-09 36.1 0.0 2.3 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|302348202|ref|YP_003815840.1| - 0.001 19.1 0.0 0.0022 18.1 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|302348202|ref|YP_003815840.1| - 0.0013 18.0 0.0 0.0023 17.2 0.0 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|302348202|ref|YP_003815840.1| - 0.012 15.1 0.2 0.39 10.1 0.2 2.3 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase MeaB PF03308.16 gi|302348202|ref|YP_003815840.1| - 0.04 12.9 0.3 0.077 12.0 0.3 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ribosomal_S7e PF01251.18 gi|302348203|ref|YP_003815841.1| - 0.00029 20.6 0.0 0.52 10.0 0.0 2.9 2 1 0 2 2 2 2 Ribosomal protein S7e KH_5 PF13184.6 gi|302348203|ref|YP_003815841.1| - 0.019 15.0 0.0 0.038 14.1 0.0 1.6 1 0 0 1 1 1 0 NusA-like KH domain XPG_I PF00867.18 gi|302348204|ref|YP_003815842.1| - 8.4e-28 96.6 0.0 1.6e-27 95.7 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|302348204|ref|YP_003815842.1| - 5.9e-22 78.1 0.0 1.1e-21 77.1 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain DUF4659 PF15558.6 gi|302348204|ref|YP_003815842.1| - 0.002 17.1 2.0 0.0036 16.2 2.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4659) 5_3_exonuc PF01367.20 gi|302348204|ref|YP_003815842.1| - 0.04 14.5 0.0 0.04 14.5 0.0 2.3 3 0 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold DUF4192 PF13830.6 gi|302348204|ref|YP_003815842.1| - 0.11 12.6 1.0 0.18 11.8 1.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) AAA PF00004.29 gi|302348206|ref|YP_003815844.1| - 1.3e-98 326.6 0.0 7.8e-49 165.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|302348206|ref|YP_003815844.1| - 4.8e-38 128.7 1.2 1.5e-18 66.3 0.1 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|302348206|ref|YP_003815844.1| - 1.3e-32 111.8 0.2 1.3e-31 108.6 1.2 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|302348206|ref|YP_003815844.1| - 1.1e-15 57.8 0.0 3.9e-07 30.0 0.0 3.3 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|302348206|ref|YP_003815844.1| - 9.5e-14 50.9 4.6 4.5e-13 48.8 2.2 2.7 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|302348206|ref|YP_003815844.1| - 2.2e-13 51.0 0.3 4.3e-06 27.2 0.0 3.2 3 2 0 3 3 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|302348206|ref|YP_003815844.1| - 4.1e-13 49.8 0.0 8.6e-06 26.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|302348206|ref|YP_003815844.1| - 6.6e-11 42.6 0.6 0.0048 17.2 0.1 4.0 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|302348206|ref|YP_003815844.1| - 9.4e-11 41.5 0.3 0.00028 20.2 0.0 3.0 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|302348206|ref|YP_003815844.1| - 1.6e-10 41.3 0.0 0.00055 20.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|302348206|ref|YP_003815844.1| - 3.7e-10 40.0 2.3 0.0017 18.4 0.1 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|302348206|ref|YP_003815844.1| - 4e-10 39.8 0.0 0.00044 20.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|302348206|ref|YP_003815844.1| - 5.7e-08 32.6 0.2 0.00039 20.4 0.0 3.0 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain IstB_IS21 PF01695.17 gi|302348206|ref|YP_003815844.1| - 6.3e-08 32.5 0.0 0.011 15.4 0.1 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|302348206|ref|YP_003815844.1| - 2.4e-07 30.3 1.3 0.0098 15.3 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|302348206|ref|YP_003815844.1| - 5.5e-07 29.5 0.0 0.035 13.8 0.0 3.9 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|302348206|ref|YP_003815844.1| - 6.8e-07 29.2 0.0 0.02 14.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|302348206|ref|YP_003815844.1| - 9.2e-07 29.2 0.0 0.06 13.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|302348206|ref|YP_003815844.1| - 9.3e-07 29.5 0.0 0.073 13.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|302348206|ref|YP_003815844.1| - 5.8e-06 25.9 0.0 0.13 11.8 0.0 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|302348206|ref|YP_003815844.1| - 9.3e-06 26.0 0.0 0.19 12.2 0.0 2.6 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.27 gi|302348206|ref|YP_003815844.1| - 1.6e-05 25.4 0.0 0.2 12.2 0.0 2.4 2 0 0 2 2 2 2 ABC transporter Zeta_toxin PF06414.12 gi|302348206|ref|YP_003815844.1| - 1.7e-05 24.2 0.1 0.15 11.3 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin DUF815 PF05673.13 gi|302348206|ref|YP_003815844.1| - 2.4e-05 23.6 0.0 0.056 12.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATPase PF06745.13 gi|302348206|ref|YP_003815844.1| - 2.6e-05 23.7 1.7 0.35 10.2 0.0 3.7 2 2 0 3 3 3 2 KaiC ATPase_2 PF01637.18 gi|302348206|ref|YP_003815844.1| - 3.9e-05 23.7 0.9 0.37 10.7 0.1 4.0 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|302348206|ref|YP_003815844.1| - 5.2e-05 22.8 1.1 0.28 10.6 0.1 2.5 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.17 gi|302348206|ref|YP_003815844.1| - 6.1e-05 22.2 0.1 0.14 11.2 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|302348206|ref|YP_003815844.1| - 7.5e-05 22.7 0.0 0.53 10.3 0.1 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|302348206|ref|YP_003815844.1| - 0.00015 21.7 0.9 0.5 10.3 0.1 2.9 3 0 0 3 3 2 2 NACHT domain AAA_3 PF07726.11 gi|302348206|ref|YP_003815844.1| - 0.00018 21.4 0.0 0.87 9.5 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) UFD1 PF03152.14 gi|302348206|ref|YP_003815844.1| - 0.00063 19.3 0.3 0.0046 16.4 0.2 2.1 1 1 0 2 2 2 1 Ubiquitin fusion degradation protein UFD1 AAA_19 PF13245.6 gi|302348206|ref|YP_003815844.1| - 0.001 19.4 1.9 3.1 8.1 0.0 3.4 3 1 1 4 4 3 1 AAA domain Guanylate_kin PF00625.21 gi|302348206|ref|YP_003815844.1| - 0.0017 18.1 0.2 14 5.3 0.0 4.1 2 2 2 4 4 4 0 Guanylate kinase Sigma54_activ_2 PF14532.6 gi|302348206|ref|YP_003815844.1| - 0.0017 18.5 0.0 3.2 7.9 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.6 gi|302348206|ref|YP_003815844.1| - 0.0021 17.7 13.9 0.23 11.0 0.7 4.8 3 2 0 3 3 3 2 AAA domain AAA_11 PF13086.6 gi|302348206|ref|YP_003815844.1| - 0.0025 17.7 0.0 2.7 7.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain Bac_DnaA PF00308.18 gi|302348206|ref|YP_003815844.1| - 0.0025 17.7 0.0 0.51 10.1 0.0 2.7 2 1 0 2 2 2 1 Bacterial dnaA protein AAA_30 PF13604.6 gi|302348206|ref|YP_003815844.1| - 0.0036 17.0 1.6 2.5 7.8 0.1 2.7 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|302348206|ref|YP_003815844.1| - 0.0039 17.6 0.0 5.5 7.4 0.0 2.8 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|302348206|ref|YP_003815844.1| - 0.005 16.1 0.0 0.71 9.0 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|302348206|ref|YP_003815844.1| - 0.0054 15.9 0.0 2.1 7.4 0.0 2.6 2 0 0 2 2 2 1 NB-ARC domain Rad17 PF03215.15 gi|302348206|ref|YP_003815844.1| - 0.0065 16.4 0.0 1.1 9.2 0.0 3.0 2 1 1 3 3 3 1 Rad17 P-loop domain AFG1_ATPase PF03969.16 gi|302348206|ref|YP_003815844.1| - 0.0098 14.8 0.0 2.9 6.7 0.0 2.3 2 0 0 2 2 2 1 AFG1-like ATPase IPT PF01745.16 gi|302348206|ref|YP_003815844.1| - 0.011 15.2 0.2 1.1 8.5 0.0 2.5 2 0 0 2 2 2 0 Isopentenyl transferase TniB PF05621.11 gi|302348206|ref|YP_003815844.1| - 0.029 13.8 0.0 7.9 5.8 0.0 3.0 4 0 0 4 4 2 0 Bacterial TniB protein AAA_29 PF13555.6 gi|302348206|ref|YP_003815844.1| - 0.037 13.8 0.0 10 6.0 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|302348206|ref|YP_003815844.1| - 0.071 13.0 2.6 21 5.0 0.0 3.6 2 1 0 3 3 3 0 NTPase PduV-EutP PF10662.9 gi|302348206|ref|YP_003815844.1| - 0.077 12.7 0.0 13 5.5 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Cytidylate_kin PF02224.18 gi|302348206|ref|YP_003815844.1| - 0.088 12.5 0.1 8.3 6.1 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase cobW PF02492.19 gi|302348206|ref|YP_003815844.1| - 0.13 11.8 0.1 20 4.7 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Radical_SAM PF04055.21 gi|302348208|ref|YP_003815846.1| - 3.4e-14 53.6 0.0 2.8e-13 50.6 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily LPG_synthase_TM PF03706.13 gi|302348209|ref|YP_003815847.1| - 1.7e-10 41.0 28.5 2.8e-10 40.2 28.5 1.4 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region TMEM220 PF15071.6 gi|302348209|ref|YP_003815847.1| - 8.1 7.3 7.2 23 5.8 0.1 3.0 3 1 0 3 3 3 0 Transmembrane family 220, helix tRNA-synt_2 PF00152.20 gi|302348210|ref|YP_003815848.1| - 8.9e-90 300.9 0.0 1.1e-89 300.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|302348210|ref|YP_003815848.1| - 6e-14 51.8 1.4 1.1e-13 51.0 1.4 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|302348210|ref|YP_003815848.1| - 0.015 14.8 0.1 0.21 11.1 0.0 2.4 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) Diphthami_syn_2 PF01902.17 gi|302348211|ref|YP_003815849.1| - 2.9e-49 167.5 0.0 3.3e-49 167.4 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase ThiI PF02568.14 gi|302348211|ref|YP_003815849.1| - 0.0038 16.8 0.0 0.0075 15.9 0.0 1.5 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|302348211|ref|YP_003815849.1| - 0.059 12.9 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC MYO10_CC PF16735.5 gi|302348211|ref|YP_003815849.1| - 0.19 11.9 2.0 0.44 10.7 2.0 1.6 1 0 0 1 1 1 0 Unconventional myosin-X coiled coil domain Peptidase_M50 PF02163.22 gi|302348213|ref|YP_003815851.1| - 1.3e-09 37.7 14.4 1.7e-07 30.8 0.4 2.8 1 1 1 2 2 2 2 Peptidase family M50 TP_methylase PF00590.20 gi|302348214|ref|YP_003815852.1| - 3.8e-21 76.0 0.0 5e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases PadR PF03551.14 gi|302348215|ref|YP_003815853.1| - 8.1e-18 64.2 0.0 1.6e-17 63.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|302348215|ref|YP_003815853.1| - 0.00045 20.8 0.0 0.00069 20.2 0.0 1.3 1 1 0 1 1 1 1 Replication terminator protein Y2_Tnp PF04986.13 gi|302348215|ref|YP_003815853.1| - 0.061 13.4 0.0 0.089 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative transposase V_ATPase_I PF01496.19 gi|302348216|ref|YP_003815854.1| - 8.8e-35 119.9 0.0 2e-20 72.4 0.0 2.8 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family DUF1664 PF07889.12 gi|302348216|ref|YP_003815854.1| - 0.016 15.3 0.1 0.62 10.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) BST2 PF16716.5 gi|302348216|ref|YP_003815854.1| - 0.029 15.0 0.3 0.99 10.0 0.1 2.2 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 MbeD_MobD PF04899.12 gi|302348216|ref|YP_003815854.1| - 0.032 14.4 0.2 5.4 7.2 0.0 2.4 2 0 0 2 2 2 0 MbeD/MobD like Dynactin_p22 PF07426.11 gi|302348216|ref|YP_003815854.1| - 0.033 14.0 1.2 1 9.2 0.1 2.2 2 0 0 2 2 2 0 Dynactin subunit p22 DUF4200 PF13863.6 gi|302348216|ref|YP_003815854.1| - 0.07 13.5 0.3 19 5.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) CdvA PF18822.1 gi|302348216|ref|YP_003815854.1| - 0.08 12.8 2.2 0.7 9.7 0.2 2.3 2 0 0 2 2 2 0 CdvA-like coiled-coil domain Spc7 PF08317.11 gi|302348216|ref|YP_003815854.1| - 0.19 10.6 0.2 6.9 5.4 0.0 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein DivIC PF04977.15 gi|302348216|ref|YP_003815854.1| - 0.24 11.2 1.5 2.7 7.8 0.3 2.3 2 0 0 2 2 2 0 Septum formation initiator CPP1-like PF11833.8 gi|302348216|ref|YP_003815854.1| - 0.24 11.0 1.2 0.33 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like ATP-synt_F PF01990.17 gi|302348217|ref|YP_003815855.1| - 1.4e-09 38.1 0.0 1.7e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF1611_N PF17396.2 gi|302348217|ref|YP_003815855.1| - 0.0034 17.6 0.0 0.0047 17.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_N) Rossmann-like domain DUF3572 PF12096.8 gi|302348217|ref|YP_003815855.1| - 0.0055 16.9 0.0 0.0093 16.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3572) vATP-synt_E PF01991.18 gi|302348218|ref|YP_003815856.1| - 2.2e-10 40.3 5.4 3.1e-10 39.8 5.4 1.3 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit RE_CfrBI PF09516.10 gi|302348218|ref|YP_003815856.1| - 0.0077 15.7 0.7 0.035 13.5 0.3 2.0 1 1 1 2 2 2 1 CfrBI restriction endonuclease DUF445 PF04286.12 gi|302348218|ref|YP_003815856.1| - 0.031 14.1 1.0 0.041 13.7 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Phasin PF05597.11 gi|302348218|ref|YP_003815856.1| - 0.063 13.3 1.5 0.11 12.5 1.5 1.5 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) ATP-synt_ab PF00006.25 gi|302348219|ref|YP_003815857.1| - 4.8e-91 304.1 0.0 6.8e-91 303.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|302348219|ref|YP_003815857.1| - 7.6e-43 145.2 0.1 1.4e-42 144.4 0.1 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|302348219|ref|YP_003815857.1| - 2.4e-14 53.6 1.7 2.4e-14 53.6 1.7 2.3 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain DUF853 PF05872.12 gi|302348219|ref|YP_003815857.1| - 0.034 12.8 0.1 0.051 12.2 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 gi|302348219|ref|YP_003815857.1| - 0.14 12.4 0.1 0.38 11.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|302348220|ref|YP_003815858.1| - 7.7e-70 234.9 0.0 1.1e-69 234.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|302348220|ref|YP_003815858.1| - 2.8e-13 50.2 2.7 8.3e-13 48.7 2.7 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|302348220|ref|YP_003815858.1| - 0.0027 17.8 0.7 0.0074 16.4 0.7 1.7 1 0 0 1 1 1 1 HAS barrel domain AA_kinase PF00696.28 gi|302348221|ref|YP_003815859.1| - 4.9e-19 68.9 0.0 2.4e-18 66.6 0.0 1.8 1 1 0 1 1 1 1 Amino acid kinase family DRAT PF07357.11 gi|302348222|ref|YP_003815860.1| - 0.048 12.9 0.0 0.057 12.6 0.0 1.1 1 0 0 1 1 1 0 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) COX2 PF00116.20 gi|302348222|ref|YP_003815860.1| - 0.34 10.8 1.4 3.1 7.7 0.2 2.0 1 1 1 2 2 2 0 Cytochrome C oxidase subunit II, periplasmic domain Transformer PF06495.11 gi|302348223|ref|YP_003815861.1| - 0.14 12.2 7.2 0.19 11.8 7.2 1.2 1 0 0 1 1 1 0 Fruit fly transformer protein VSG_B PF13206.6 gi|302348223|ref|YP_003815861.1| - 0.24 10.6 6.1 0.25 10.6 6.1 1.0 1 0 0 1 1 1 0 Trypanosomal VSG domain RNA_pol_Rpb6 PF01192.22 gi|302348224|ref|YP_003815862.1| - 1e-09 38.1 0.0 1.4e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Ribosomal_L21e PF01157.18 gi|302348226|ref|YP_003815864.1| - 9e-34 115.4 1.1 1e-33 115.2 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|302348227|ref|YP_003815865.1| - 0.009 16.3 0.0 0.038 14.3 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb4 Topoisom_bac PF01131.20 gi|302348228|ref|YP_003815866.1| - 6.7e-97 325.1 0.0 8.2e-97 324.8 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|302348228|ref|YP_003815866.1| - 1.8e-14 53.8 0.0 4.6e-14 52.5 0.0 1.7 2 0 0 2 2 2 1 Toprim domain HTH_22 PF13309.6 gi|302348228|ref|YP_003815866.1| - 0.003 17.6 0.0 5.9 7.1 0.0 3.2 3 0 0 3 3 3 2 HTH domain HTH_17 PF12728.7 gi|302348228|ref|YP_003815866.1| - 0.01 16.0 0.2 1.4 9.1 0.0 3.8 3 0 0 3 3 3 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|302348228|ref|YP_003815866.1| - 0.021 14.7 0.3 18 5.3 0.1 4.1 4 0 0 4 4 4 0 MarR family HTH_AsnC-type PF13404.6 gi|302348228|ref|YP_003815866.1| - 0.026 14.4 0.6 0.15 11.9 0.1 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF2240 PF09999.9 gi|302348228|ref|YP_003815866.1| - 0.05 13.2 0.1 9 5.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2240) DUF2703 PF10865.8 gi|302348228|ref|YP_003815866.1| - 0.17 12.1 0.0 0.4 10.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF2703) RHH_1 PF01402.21 gi|302348228|ref|YP_003815866.1| - 0.24 11.4 3.9 0.13 12.2 0.8 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family T2SSF PF00482.23 gi|302348228|ref|YP_003815866.1| - 0.32 11.0 1.1 3.3 7.7 0.1 2.9 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F Peptidase_S24 PF00717.23 gi|302348229|ref|YP_003815867.1| - 1.5e-09 37.7 0.1 3e-09 36.7 0.1 1.6 1 1 0 1 1 1 1 Peptidase S24-like MutS_I PF01624.20 gi|302348229|ref|YP_003815867.1| - 0.068 13.4 0.0 0.092 13.0 0.0 1.2 1 0 0 1 1 1 0 MutS domain I NLPC_P60 PF00877.19 gi|302348229|ref|YP_003815867.1| - 0.16 12.0 0.3 1.1 9.3 0.2 2.0 1 1 1 2 2 2 0 NlpC/P60 family Ribonuc_red_lgC PF02867.15 gi|302348230|ref|YP_003815868.1| - 1.4e-129 433.0 0.0 5.3e-96 322.2 0.0 3.0 2 1 0 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|302348230|ref|YP_003815868.1| - 2.9e-14 52.8 0.4 2.9e-14 52.8 0.4 2.2 3 0 0 3 3 3 1 Ribonucleotide reductase, all-alpha domain zf-C2H2_12 PF18658.1 gi|302348232|ref|YP_003815870.1| - 0.027 14.1 0.0 0.1 12.2 0.0 1.9 2 0 0 2 2 2 0 Zinc-finger C2H2-type zinc_ribbon_2 PF13240.6 gi|302348232|ref|YP_003815870.1| - 0.15 11.8 1.4 0.7 9.7 1.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|302348232|ref|YP_003815870.1| - 0.27 10.8 1.1 0.63 9.6 1.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Radical_SAM PF04055.21 gi|302348233|ref|YP_003815871.1| - 6e-16 59.3 0.0 9.1e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|302348233|ref|YP_003815871.1| - 7.6e-07 29.5 0.0 1.1e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|302348233|ref|YP_003815871.1| - 0.0021 18.2 0.0 0.0035 17.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|302348234|ref|YP_003815872.1| - 6.8e-11 42.4 2.3 9.7e-11 42.0 2.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|302348234|ref|YP_003815872.1| - 4.7e-09 36.2 1.7 0.0007 19.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|302348234|ref|YP_003815872.1| - 1e-08 34.6 11.6 1.8e-05 24.4 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|302348234|ref|YP_003815872.1| - 9.1e-08 32.6 20.9 1.3e-06 28.9 9.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|302348234|ref|YP_003815872.1| - 1.2e-06 28.2 12.7 0.0014 18.6 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|302348234|ref|YP_003815872.1| - 1.5e-06 28.7 7.3 1.1e-05 25.8 7.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|302348234|ref|YP_003815872.1| - 2.2e-06 27.5 13.8 0.0033 17.4 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|302348234|ref|YP_003815872.1| - 2.7e-06 27.5 1.5 0.025 14.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|302348234|ref|YP_003815872.1| - 4.7e-06 26.6 6.3 0.012 15.7 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|302348234|ref|YP_003815872.1| - 1.1e-05 25.5 9.1 0.00065 19.8 10.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|302348234|ref|YP_003815872.1| - 6.8e-05 23.7 8.8 0.0004 21.3 8.9 1.9 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|302348234|ref|YP_003815872.1| - 0.00012 21.8 1.9 0.1 12.4 0.3 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 gi|302348234|ref|YP_003815872.1| - 0.00039 20.7 11.2 0.013 15.9 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|302348234|ref|YP_003815872.1| - 0.006 17.4 8.3 0.31 11.9 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|302348234|ref|YP_003815872.1| - 0.054 14.5 17.7 0.14 13.1 4.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain c-SKI_SMAD_bind PF08782.10 gi|302348234|ref|YP_003815872.1| - 0.12 12.6 1.2 2 8.7 0.1 2.1 2 0 0 2 2 2 0 c-SKI Smad4 binding domain CCG PF02754.16 gi|302348235|ref|YP_003815873.1| - 1.9e-07 31.2 0.0 3.8e-07 30.2 0.0 1.5 2 0 0 2 2 2 1 Cysteine-rich domain DEAD PF00270.29 gi|302348237|ref|YP_003815875.1| - 1.2e-32 113.1 0.0 3.5e-32 111.6 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|302348237|ref|YP_003815875.1| - 2.2e-19 69.8 0.1 1.3e-18 67.4 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|302348237|ref|YP_003815875.1| - 3.1e-10 40.2 0.0 8.1e-10 38.8 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated PhoH PF02562.16 gi|302348237|ref|YP_003815875.1| - 0.0053 16.2 0.1 4.4 6.7 0.0 2.7 3 0 0 3 3 3 2 PhoH-like protein HypA PF01155.19 gi|302348237|ref|YP_003815875.1| - 0.0053 16.8 0.2 0.039 14.0 0.0 2.5 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4379 PF14311.6 gi|302348237|ref|YP_003815875.1| - 0.008 16.5 0.1 0.017 15.5 0.1 1.5 1 0 0 1 1 1 1 Probable Zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|302348237|ref|YP_003815875.1| - 0.035 14.2 0.1 0.086 13.0 0.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain HHH_5 PF14520.6 gi|302348237|ref|YP_003815875.1| - 0.1 13.2 1.8 7.3 7.3 0.0 3.4 3 0 0 3 3 3 0 Helix-hairpin-helix domain DZR PF12773.7 gi|302348237|ref|YP_003815875.1| - 0.13 12.3 0.1 0.21 11.6 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|302348237|ref|YP_003815875.1| - 0.21 11.6 0.4 9.2 6.3 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|302348237|ref|YP_003815875.1| - 0.22 11.2 0.5 0.5 10.1 0.5 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Cpn60_TCP1 PF00118.24 gi|302348238|ref|YP_003815876.1| - 7.7e-178 592.1 12.9 8.8e-178 591.9 12.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family RuvB_C PF05491.13 gi|302348238|ref|YP_003815876.1| - 0.011 15.6 0.0 0.22 11.4 0.0 2.7 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain AsnC_trans_reg PF01037.21 gi|302348238|ref|YP_003815876.1| - 0.041 13.9 0.6 2.9 7.9 0.1 2.8 3 0 0 3 3 3 0 Lrp/AsnC ligand binding domain zinc-ribbons_6 PF07191.12 gi|302348239|ref|YP_003815877.1| - 0.01 15.8 2.0 0.04 13.9 2.0 1.8 1 1 0 1 1 1 0 zinc-ribbons DUF1512 PF07431.12 gi|302348241|ref|YP_003815879.1| - 5e-140 466.5 0.2 5.8e-140 466.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Peptidase_M24 PF00557.24 gi|302348242|ref|YP_003815880.1| - 2.8e-37 128.5 0.0 3.3e-37 128.2 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Lactamase_B_3 PF13483.6 gi|302348243|ref|YP_003815881.1| - 2.8e-26 92.4 0.2 4e-26 91.9 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|302348243|ref|YP_003815881.1| - 6e-22 78.1 0.3 8.5e-22 77.7 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|302348243|ref|YP_003815881.1| - 3.5e-12 46.8 2.3 7.2e-12 45.7 2.3 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily ABC_tran PF00005.27 gi|302348244|ref|YP_003815882.1| - 2.3e-38 131.8 0.0 9.5e-19 68.3 0.0 2.6 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|302348244|ref|YP_003815882.1| - 1.2e-13 51.1 0.4 0.00039 19.9 0.0 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|302348244|ref|YP_003815882.1| - 1.3e-11 44.9 5.3 0.0022 17.9 0.1 4.2 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|302348244|ref|YP_003815882.1| - 3.4e-09 36.4 2.6 3.4e-09 36.4 2.6 1.9 2 0 0 2 2 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|302348244|ref|YP_003815882.1| - 6.3e-09 35.3 5.7 6.3e-09 35.3 5.7 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|302348244|ref|YP_003815882.1| - 8.9e-08 32.1 9.9 4.3e-06 26.7 0.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|302348244|ref|YP_003815882.1| - 4.2e-07 29.7 15.0 2.6e-06 27.3 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_22 PF13401.6 gi|302348244|ref|YP_003815882.1| - 8.2e-07 29.4 0.2 0.00066 20.0 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|302348244|ref|YP_003815882.1| - 2.8e-06 27.8 0.0 0.069 13.6 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|302348244|ref|YP_003815882.1| - 4.1e-06 27.4 0.7 0.22 12.1 0.0 3.7 3 1 0 4 4 3 2 AAA domain Fer4_7 PF12838.7 gi|302348244|ref|YP_003815882.1| - 6.1e-06 26.7 8.0 1.3e-05 25.7 8.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|302348244|ref|YP_003815882.1| - 2.3e-05 24.2 2.6 2.3e-05 24.2 2.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|302348244|ref|YP_003815882.1| - 3.9e-05 23.7 12.4 0.0001 22.4 12.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_23 PF13476.6 gi|302348244|ref|YP_003815882.1| - 4e-05 24.2 0.2 0.11 13.0 0.2 2.3 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|302348244|ref|YP_003815882.1| - 6e-05 23.0 0.0 0.26 11.2 0.0 2.7 2 0 0 2 2 2 2 RsgA GTPase NACHT PF05729.12 gi|302348244|ref|YP_003815882.1| - 7.6e-05 22.7 0.1 0.075 12.9 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.6 gi|302348244|ref|YP_003815882.1| - 9.3e-05 22.9 0.0 0.026 14.9 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.22 gi|302348244|ref|YP_003815882.1| - 9.8e-05 22.7 0.0 0.41 11.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase NTPase_1 PF03266.15 gi|302348244|ref|YP_003815882.1| - 0.00011 22.2 0.3 0.026 14.4 0.0 2.6 2 0 0 2 2 2 1 NTPase AAA_24 PF13479.6 gi|302348244|ref|YP_003815882.1| - 0.00017 21.4 0.8 0.09 12.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|302348244|ref|YP_003815882.1| - 0.00038 20.5 0.1 1.1 9.3 0.0 2.8 3 0 0 3 3 2 2 AAA domain Fer4_9 PF13187.6 gi|302348244|ref|YP_003815882.1| - 0.0004 20.5 9.5 0.00074 19.6 9.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Rad17 PF03215.15 gi|302348244|ref|YP_003815882.1| - 0.00049 20.1 0.0 0.49 10.3 0.0 2.3 2 0 0 2 2 2 1 Rad17 P-loop domain TsaE PF02367.17 gi|302348244|ref|YP_003815882.1| - 0.00055 19.9 0.1 0.17 11.9 0.0 2.6 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Fer4_16 PF13484.6 gi|302348244|ref|YP_003815882.1| - 0.00057 20.8 6.2 0.0071 17.3 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_29 PF13555.6 gi|302348244|ref|YP_003815882.1| - 0.00062 19.5 0.8 0.81 9.5 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|302348244|ref|YP_003815882.1| - 0.0011 18.6 0.0 0.041 13.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|302348244|ref|YP_003815882.1| - 0.0013 19.0 0.1 1 9.6 0.0 2.8 2 0 0 2 2 2 1 AAA domain Fer4_3 PF12798.7 gi|302348244|ref|YP_003815882.1| - 0.0013 19.5 14.7 0.0013 19.5 4.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain MMR_HSR1 PF01926.23 gi|302348244|ref|YP_003815882.1| - 0.0018 18.4 0.0 1 9.5 0.0 2.9 3 0 0 3 3 2 1 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|302348244|ref|YP_003815882.1| - 0.0026 17.9 0.1 1.1 9.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|302348244|ref|YP_003815882.1| - 0.0026 17.9 0.1 5.3 7.3 0.0 3.0 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|302348244|ref|YP_003815882.1| - 0.0032 17.2 0.3 1.3 8.7 0.0 2.8 3 1 0 3 3 2 1 AAA domain Fer4_4 PF12800.7 gi|302348244|ref|YP_003815882.1| - 0.0041 17.5 2.8 0.0041 17.5 2.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain SRP54 PF00448.22 gi|302348244|ref|YP_003815882.1| - 0.0045 16.6 1.8 1.7 8.2 0.0 2.3 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain T2SSE PF00437.20 gi|302348244|ref|YP_003815882.1| - 0.0052 15.9 0.0 0.37 9.8 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_15 PF13175.6 gi|302348244|ref|YP_003815882.1| - 0.0065 16.2 0.8 0.82 9.3 0.1 2.4 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.14 gi|302348244|ref|YP_003815882.1| - 0.019 14.8 0.4 2.6 8.0 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATPase_2 PF01637.18 gi|302348244|ref|YP_003815882.1| - 0.042 13.8 0.4 0.34 10.8 0.1 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea RuvB_N PF05496.12 gi|302348244|ref|YP_003815882.1| - 0.045 13.5 0.1 7.9 6.2 0.0 2.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|302348244|ref|YP_003815882.1| - 0.048 14.0 1.8 1.1 9.6 0.0 2.8 3 0 0 3 3 2 0 AAA domain PRK PF00485.18 gi|302348244|ref|YP_003815882.1| - 0.053 13.2 0.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|302348244|ref|YP_003815882.1| - 0.054 12.7 0.7 8.6 5.5 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain Fer4_17 PF13534.6 gi|302348244|ref|YP_003815882.1| - 0.08 13.5 7.2 0.26 11.9 1.5 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain KAP_NTPase PF07693.14 gi|302348244|ref|YP_003815882.1| - 0.085 12.1 0.0 5.3 6.2 0.0 2.3 2 0 0 2 2 2 0 KAP family P-loop domain MeaB PF03308.16 gi|302348244|ref|YP_003815882.1| - 0.087 11.8 0.8 6.9 5.6 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB dNK PF01712.19 gi|302348244|ref|YP_003815882.1| - 0.1 12.4 0.0 12 5.7 0.0 2.7 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_7 PF12775.7 gi|302348244|ref|YP_003815882.1| - 0.13 11.8 0.1 2.6 7.5 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region Fer4_8 PF13183.6 gi|302348244|ref|YP_003815882.1| - 0.13 12.7 6.9 0.16 12.4 1.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain VirE PF05272.11 gi|302348244|ref|YP_003815882.1| - 0.16 11.7 0.0 11 5.7 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E SpoU_methylase PF00588.19 gi|302348245|ref|YP_003815883.1| - 1.4e-28 99.8 0.0 2e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|302348245|ref|YP_003815883.1| - 0.00022 21.1 0.0 0.0083 16.0 0.0 2.3 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase DNA_ligase_A_N PF04675.14 gi|302348245|ref|YP_003815883.1| - 0.13 12.6 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 DNA ligase N terminus SIS PF01380.22 gi|302348246|ref|YP_003815884.1| - 9.5e-15 54.6 0.0 2e-14 53.5 0.0 1.5 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|302348246|ref|YP_003815884.1| - 6.2e-12 45.7 1.8 2e-08 34.3 0.8 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|302348246|ref|YP_003815884.1| - 0.15 11.9 1.9 6.1 6.7 0.1 2.2 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase MarR_2 PF12802.7 gi|302348249|ref|YP_003815887.1| - 0.034 14.0 0.1 0.41 10.6 0.0 2.3 2 1 0 2 2 2 0 MarR family RHH_1 PF01402.21 gi|302348249|ref|YP_003815887.1| - 0.088 12.8 0.5 0.23 11.4 0.5 1.9 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family HTH_Tnp_ISL3 PF13542.6 gi|302348249|ref|YP_003815887.1| - 0.099 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_6 PF01418.17 gi|302348249|ref|YP_003815887.1| - 0.18 11.8 3.0 0.13 12.2 1.4 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family MTS PF05175.14 gi|302348250|ref|YP_003815888.1| - 1.1e-10 41.3 0.0 1.6e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|302348250|ref|YP_003815888.1| - 2.7e-09 36.8 0.0 3.9e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|302348250|ref|YP_003815888.1| - 1.1e-06 29.3 0.0 2.5e-06 28.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|302348250|ref|YP_003815888.1| - 0.00012 21.9 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|302348250|ref|YP_003815888.1| - 0.00045 20.1 0.0 0.00072 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|302348250|ref|YP_003815888.1| - 0.0011 19.5 0.0 0.0022 18.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|302348250|ref|YP_003815888.1| - 0.018 15.8 0.0 0.033 14.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF543 PF04418.12 gi|302348250|ref|YP_003815888.1| - 0.054 13.5 0.1 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF543) RrnaAD PF00398.20 gi|302348251|ref|YP_003815889.1| - 1.3e-36 126.1 0.0 1.6e-36 125.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|302348251|ref|YP_003815889.1| - 0.0033 17.2 0.0 0.0055 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|302348251|ref|YP_003815889.1| - 0.0033 18.1 0.0 0.0091 16.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain DREV PF05219.12 gi|302348251|ref|YP_003815889.1| - 0.008 15.3 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_11 PF08241.12 gi|302348251|ref|YP_003815889.1| - 0.071 13.8 0.0 0.14 12.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF655 PF04919.12 gi|302348252|ref|YP_003815890.1| - 2.5e-56 190.5 0.7 5.7e-56 189.3 0.7 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|302348252|ref|YP_003815890.1| - 0.012 15.9 0.0 0.032 14.5 0.0 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix motif Enkurin PF13864.6 gi|302348253|ref|YP_003815891.1| - 0.0061 17.0 1.5 0.01 16.3 1.5 1.3 1 0 0 1 1 1 1 Calmodulin-binding PDZ_3 PF17815.1 gi|302348253|ref|YP_003815891.1| - 0.038 13.8 0.5 0.046 13.6 0.5 1.1 1 0 0 1 1 1 0 PDZ domain Spc7 PF08317.11 gi|302348253|ref|YP_003815891.1| - 0.096 11.5 3.6 0.11 11.4 3.6 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Prismane PF03063.20 gi|302348253|ref|YP_003815891.1| - 0.15 10.7 0.5 0.16 10.6 0.5 1.0 1 0 0 1 1 1 0 Prismane/CO dehydrogenase family COG5 PF10392.9 gi|302348253|ref|YP_003815891.1| - 0.16 12.2 3.8 0.19 11.9 3.3 1.3 1 1 0 1 1 1 0 Golgi transport complex subunit 5 PNPase PF03726.14 gi|302348253|ref|YP_003815891.1| - 0.37 11.3 4.0 1.4 9.4 1.2 2.3 2 1 0 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain Glyco_trans_2_3 PF13632.6 gi|302348254|ref|YP_003815892.1| - 1.8e-13 50.8 4.0 2.6e-13 50.3 4.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|302348254|ref|YP_003815892.1| - 3.1e-07 30.5 0.0 4.2e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TFIIS_C PF01096.18 gi|302348255|ref|YP_003815893.1| - 1.2e-20 73.0 12.4 1.1e-19 70.0 3.2 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|302348255|ref|YP_003815893.1| - 1.2e-09 37.9 8.8 9.7e-08 31.8 1.3 2.8 2 1 0 2 2 2 2 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|302348255|ref|YP_003815893.1| - 4.6e-08 32.9 10.9 0.0001 22.2 0.8 3.1 2 1 1 3 3 3 3 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|302348255|ref|YP_003815893.1| - 7.3e-07 28.7 14.3 0.13 12.0 0.2 4.2 4 0 0 4 4 4 3 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|302348255|ref|YP_003815893.1| - 3.3e-06 26.5 9.4 0.0026 17.2 0.3 3.3 2 2 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|302348255|ref|YP_003815893.1| - 5.4e-06 26.3 6.9 0.0015 18.5 0.4 2.8 2 1 0 2 2 2 2 Double zinc ribbon DUF2387 PF09526.10 gi|302348255|ref|YP_003815893.1| - 1.5e-05 25.0 3.8 0.051 13.7 0.4 2.5 2 1 0 2 2 2 2 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.11 gi|302348255|ref|YP_003815893.1| - 2.2e-05 24.3 7.1 0.036 14.0 0.6 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|302348255|ref|YP_003815893.1| - 2.4e-05 23.5 13.2 0.21 11.0 0.1 4.2 4 0 0 4 4 4 3 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|302348255|ref|YP_003815893.1| - 0.00016 21.5 12.4 0.76 9.7 0.2 4.2 4 0 0 4 4 4 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|302348255|ref|YP_003815893.1| - 0.00026 20.9 2.9 0.24 11.4 1.6 3.3 2 2 0 2 2 2 1 PhnA Zinc-Ribbon zf-NADH-PPase PF09297.11 gi|302348255|ref|YP_003815893.1| - 0.00042 19.9 13.0 0.013 15.2 4.6 4.0 3 1 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|302348255|ref|YP_003815893.1| - 0.00044 20.0 1.7 0.00044 20.0 1.7 2.6 3 0 0 3 3 2 1 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.6 gi|302348255|ref|YP_003815893.1| - 0.00051 19.3 11.3 0.0017 17.6 1.0 2.6 2 1 0 2 2 2 1 Transcription factor zinc-finger UPF0547 PF10571.9 gi|302348255|ref|YP_003815893.1| - 0.00093 19.2 14.8 1.4 9.0 0.2 4.3 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 Zn_ribbon_SprT PF17283.2 gi|302348255|ref|YP_003815893.1| - 0.0018 18.2 11.6 0.14 12.1 0.7 3.8 2 1 1 3 3 3 1 SprT-like zinc ribbon domain IBR PF01485.21 gi|302348255|ref|YP_003815893.1| - 0.0029 17.8 7.8 0.021 15.1 0.6 2.9 2 1 1 3 3 3 1 IBR domain, a half RING-finger domain Elf1 PF05129.13 gi|302348255|ref|YP_003815893.1| - 0.0044 17.0 2.0 0.59 10.2 0.0 2.6 2 1 0 2 2 2 1 Transcription elongation factor Elf1 like zf_UBZ PF18439.1 gi|302348255|ref|YP_003815893.1| - 0.0045 16.5 9.6 3.8 7.2 0.1 4.2 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|302348255|ref|YP_003815893.1| - 0.0065 16.4 14.8 0.23 11.4 4.5 3.6 2 2 0 2 2 2 1 Nudix N-terminal HypA PF01155.19 gi|302348255|ref|YP_003815893.1| - 0.0068 16.4 5.2 0.51 10.4 2.3 2.8 1 1 1 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Terminase_GpA PF05876.12 gi|302348255|ref|YP_003815893.1| - 0.0083 14.7 0.5 0.0083 14.7 0.5 2.0 2 1 0 2 2 2 1 Phage terminase large subunit (GpA) Zn-ribbon_8 PF09723.10 gi|302348255|ref|YP_003815893.1| - 0.0088 16.1 14.1 7.8 6.7 0.7 4.2 3 1 0 4 4 4 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|302348255|ref|YP_003815893.1| - 0.01 15.3 11.5 0.37 10.3 0.7 3.8 3 1 1 4 4 4 0 Mu-like prophage protein Com CpXC PF14353.6 gi|302348255|ref|YP_003815893.1| - 0.012 15.6 8.8 1 9.4 0.0 4.0 1 1 2 4 4 4 0 CpXC protein TerY_C PF15616.6 gi|302348255|ref|YP_003815893.1| - 0.019 15.1 2.5 0.87 9.7 0.2 2.3 2 0 0 2 2 2 0 TerY-C metal binding domain DpnI PF06044.12 gi|302348255|ref|YP_003815893.1| - 0.02 14.6 0.3 4.6 6.8 0.0 2.1 2 0 0 2 2 2 0 Dam-replacing family zf-DNA_Pol PF08996.10 gi|302348255|ref|YP_003815893.1| - 0.023 14.5 0.5 2 8.1 0.1 2.2 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger Lar_restr_allev PF14354.6 gi|302348255|ref|YP_003815893.1| - 0.025 15.0 11.2 0.056 13.8 0.6 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar DUF35_N PF12172.8 gi|302348255|ref|YP_003815893.1| - 0.025 14.5 11.0 8.7 6.3 0.1 4.2 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc-ribbons_6 PF07191.12 gi|302348255|ref|YP_003815893.1| - 0.037 14.0 4.4 0.54 10.3 0.1 2.7 2 1 1 3 3 3 0 zinc-ribbons DUF3797 PF12677.7 gi|302348255|ref|YP_003815893.1| - 0.037 13.9 2.2 0.037 13.9 2.2 3.4 2 2 1 3 3 3 0 Domain of unknown function (DUF3797) zf-IS66 PF13005.7 gi|302348255|ref|YP_003815893.1| - 0.039 14.4 10.2 6.5 7.2 0.1 4.2 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_13 PF09855.9 gi|302348255|ref|YP_003815893.1| - 0.068 13.3 7.9 18 5.6 0.0 3.8 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-Sec23_Sec24 PF04810.15 gi|302348255|ref|YP_003815893.1| - 0.07 13.2 5.8 0.31 11.1 0.2 3.2 3 1 0 3 3 3 0 Sec23/Sec24 zinc finger zf-tcix PF14952.6 gi|302348255|ref|YP_003815893.1| - 0.083 12.5 13.1 4.5 7.0 0.3 4.1 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding zf-ISL3 PF14690.6 gi|302348255|ref|YP_003815893.1| - 0.13 12.9 12.5 7.8 7.2 0.1 4.1 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ZPR1 PF03367.13 gi|302348255|ref|YP_003815893.1| - 0.14 12.0 2.7 2 8.3 0.1 2.5 2 1 0 2 2 2 0 ZPR1 zinc-finger domain Zn_ribbon_recom PF13408.6 gi|302348255|ref|YP_003815893.1| - 0.14 12.7 13.0 1.6 9.3 3.6 3.0 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain DUF3268 PF11672.8 gi|302348255|ref|YP_003815893.1| - 0.18 12.2 4.3 3 8.2 0.3 2.4 2 1 0 2 2 2 0 zinc-finger-containing domain Zn_Tnp_IS91 PF14319.6 gi|302348255|ref|YP_003815893.1| - 0.18 11.9 9.2 4.9 7.3 0.1 3.8 2 2 2 4 4 4 0 Transposase zinc-binding domain Baculo_LEF5_C PF11792.8 gi|302348255|ref|YP_003815893.1| - 0.19 11.4 0.1 0.19 11.4 0.1 2.9 3 1 1 4 4 3 0 Baculoviridae late expression factor 5 C-terminal domain YacG PF03884.14 gi|302348255|ref|YP_003815893.1| - 0.2 11.4 4.6 11 5.9 0.1 3.3 3 0 0 3 3 3 0 DNA gyrase inhibitor YacG YhfH PF14149.6 gi|302348255|ref|YP_003815893.1| - 0.23 11.5 9.0 14 5.7 0.1 4.2 4 0 0 4 4 4 0 YhfH-like protein zf_C2H2_10 PF18414.1 gi|302348255|ref|YP_003815893.1| - 0.24 11.0 12.7 0.37 10.4 0.3 4.1 4 0 0 4 4 4 0 C2H2 type zinc-finger zf-ACC PF17848.1 gi|302348255|ref|YP_003815893.1| - 0.26 11.4 14.4 10 6.3 1.5 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain DUF1610 PF07754.11 gi|302348255|ref|YP_003815893.1| - 0.31 11.0 0.4 0.31 11.0 0.4 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) zinc_ribbon_10 PF10058.9 gi|302348255|ref|YP_003815893.1| - 0.31 10.8 9.3 10 5.9 2.2 3.7 3 1 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1178 PF06676.11 gi|302348255|ref|YP_003815893.1| - 0.34 11.3 1.6 1.1 9.6 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) Ribosomal_L32p PF01783.23 gi|302348255|ref|YP_003815893.1| - 0.36 11.1 7.7 2.2 8.6 1.4 3.7 3 1 0 3 3 3 0 Ribosomal L32p protein family zf-RING_7 PF02591.15 gi|302348255|ref|YP_003815893.1| - 0.37 11.0 6.7 19 5.5 0.2 3.9 4 0 0 4 4 4 0 C4-type zinc ribbon domain Zn_Tnp_IS1 PF03811.13 gi|302348255|ref|YP_003815893.1| - 0.41 10.4 0.0 0.41 10.4 0.0 3.9 4 0 0 4 4 4 0 InsA N-terminal domain zf-HIT PF04438.16 gi|302348255|ref|YP_003815893.1| - 0.47 10.4 14.2 7.8 6.5 0.1 4.1 4 0 0 4 4 4 0 HIT zinc finger NMD3 PF04981.13 gi|302348255|ref|YP_003815893.1| - 0.54 9.7 2.6 1.5 8.3 0.5 2.2 1 1 1 2 2 2 0 NMD3 family A2L_zn_ribbon PF08792.10 gi|302348255|ref|YP_003815893.1| - 0.54 10.0 10.9 2 8.3 0.4 4.0 4 0 0 4 4 4 0 A2L zinc ribbon domain NRDD PF13597.6 gi|302348255|ref|YP_003815893.1| - 1 8.0 4.2 0.93 8.2 0.1 2.2 2 1 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase DUF4379 PF14311.6 gi|302348255|ref|YP_003815893.1| - 1.5 9.3 8.9 7.9 6.9 0.5 3.6 3 1 0 3 3 3 0 Probable Zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|302348255|ref|YP_003815893.1| - 1.5 8.6 20.5 1.4 8.8 1.5 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain zf-C4_Topoisom PF01396.19 gi|302348255|ref|YP_003815893.1| - 1.6 8.6 13.6 6.9 6.5 0.2 3.7 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Rubredoxin PF00301.20 gi|302348255|ref|YP_003815893.1| - 2.9 8.0 13.9 16 5.6 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin zinc_ribbon_5 PF13719.6 gi|302348255|ref|YP_003815893.1| - 3 7.7 12.2 8.4 6.2 0.2 3.9 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|302348255|ref|YP_003815893.1| - 3.1 8.1 8.5 21 5.5 0.1 3.6 4 0 0 4 4 3 0 zinc-ribbon DNA_RNApol_7kD PF03604.13 gi|302348255|ref|YP_003815893.1| - 3.2 7.5 14.1 8.8 6.1 0.4 3.7 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit C1_2 PF03107.16 gi|302348255|ref|YP_003815893.1| - 3.4 8.0 9.3 15 6.0 2.6 2.9 2 1 0 2 2 2 0 C1 domain RNHCP PF12647.7 gi|302348255|ref|YP_003815893.1| - 3.8 7.5 6.2 9 6.3 0.2 2.9 2 1 1 3 3 3 0 RNHCP domain zf-CCHC_5 PF14787.6 gi|302348255|ref|YP_003815893.1| - 3.8 7.3 14.6 5.5 6.8 0.3 4.1 4 0 0 4 4 4 0 GAG-polyprotein viral zinc-finger RecR PF02132.15 gi|302348255|ref|YP_003815893.1| - 4.1 7.1 10.8 9.6 5.9 2.0 3.5 3 1 1 4 4 4 0 RecR protein zf-H2C2_2 PF13465.6 gi|302348255|ref|YP_003815893.1| - 4.3 7.9 13.1 6.5 7.4 0.5 3.6 4 1 0 4 4 3 0 Zinc-finger double domain zf-Mss51 PF13824.6 gi|302348255|ref|YP_003815893.1| - 5.8 7.1 14.3 16 5.6 2.9 3.6 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 C1_1 PF00130.22 gi|302348255|ref|YP_003815893.1| - 7.9 6.5 7.7 7.4 6.5 0.5 2.7 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-DNL PF05180.12 gi|302348255|ref|YP_003815893.1| - 9.4 6.3 6.2 28 4.7 0.0 3.2 4 0 0 4 4 3 0 DNL zinc finger UvrD_C_2 PF13538.6 gi|302348256|ref|YP_003815894.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain DUF429 PF04250.13 gi|302348257|ref|YP_003815895.1| - 2.2e-07 30.9 1.3 1e-05 25.4 1.3 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF429) HMGL-like PF00682.19 gi|302348257|ref|YP_003815895.1| - 0.11 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 HMGL-like tRNA-synt_2 PF00152.20 gi|302348258|ref|YP_003815896.1| - 1.9e-81 273.6 0.2 2.3e-81 273.3 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|302348258|ref|YP_003815896.1| - 5.9e-12 45.4 0.6 1e-11 44.6 0.6 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|302348258|ref|YP_003815896.1| - 0.02 14.4 1.7 1.8 8.0 0.3 3.5 3 1 1 4 4 4 0 tRNA synthetases class II core domain (F) DUF4301 PF14134.6 gi|302348258|ref|YP_003815896.1| - 0.17 10.6 0.0 0.29 9.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4301) CoA_trans PF01144.23 gi|302348259|ref|YP_003815897.1| - 2.7e-26 92.3 0.1 3.4e-26 92.0 0.1 1.1 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hydro PF02550.15 gi|302348259|ref|YP_003815897.1| - 0.091 12.7 0.0 0.19 11.7 0.0 1.5 2 0 0 2 2 2 0 Acetyl-CoA hydrolase/transferase N-terminal domain CoA_trans PF01144.23 gi|302348260|ref|YP_003815898.1| - 1.1e-12 47.8 0.0 2.1e-12 46.9 0.0 1.5 1 1 0 1 1 1 1 Coenzyme A transferase Aldose_epim PF01263.20 gi|302348261|ref|YP_003815899.1| - 1.5e-31 109.8 0.0 2.5e-31 109.1 0.0 1.3 1 1 0 1 1 1 1 Aldose 1-epimerase Radical_SAM PF04055.21 gi|302348262|ref|YP_003815900.1| - 6.4e-15 55.9 0.0 1.1e-14 55.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF4129 PF13559.6 gi|302348262|ref|YP_003815900.1| - 0.18 12.1 0.7 1.3 9.3 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) UPF0126 PF03458.13 gi|302348263|ref|YP_003815901.1| - 3.6e-37 126.1 21.2 2.5e-19 68.9 9.5 2.2 2 0 0 2 2 2 2 UPF0126 domain B12D PF06522.11 gi|302348263|ref|YP_003815901.1| - 0.028 14.2 0.2 1.5 8.7 0.0 2.9 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit TRIC PF05197.13 gi|302348263|ref|YP_003815901.1| - 0.11 12.1 1.8 0.21 11.1 0.3 1.9 2 0 0 2 2 2 0 TRIC channel PhoU PF01895.19 gi|302348264|ref|YP_003815902.1| - 5e-14 52.5 1.6 5e-14 52.5 1.6 2.5 3 0 0 3 3 3 1 PhoU domain MazE_antitoxin PF04014.18 gi|302348264|ref|YP_003815902.1| - 7.1e-11 41.8 0.1 2.2e-10 40.2 0.1 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin FabA PF07977.13 gi|302348264|ref|YP_003815902.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 FabA-like domain Amidase PF01425.21 gi|302348266|ref|YP_003815904.1| - 1.9e-130 435.9 0.0 2.1e-130 435.7 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.15 gi|302348267|ref|YP_003815905.1| - 2e-83 280.0 0.0 2.6e-83 279.6 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|302348267|ref|YP_003815905.1| - 1.2e-17 64.2 0.0 1.7e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 GatB domain Phosphodiest PF01663.22 gi|302348268|ref|YP_003815906.1| - 2.9e-21 76.5 3.0 3.4e-20 73.0 2.9 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|302348268|ref|YP_003815906.1| - 0.00047 20.3 0.1 0.004 17.3 0.0 2.2 2 0 0 2 2 2 1 PglZ domain Metalloenzyme PF01676.18 gi|302348268|ref|YP_003815906.1| - 0.0022 17.4 0.0 0.003 17.0 0.0 1.3 1 0 0 1 1 1 1 Metalloenzyme superfamily DUF4010 PF13194.6 gi|302348269|ref|YP_003815907.1| - 1.4e-24 87.0 27.1 1.4e-24 87.0 27.1 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|302348269|ref|YP_003815907.1| - 2.1e-15 57.1 15.4 2.1e-15 57.1 15.4 3.7 3 2 0 3 3 3 1 MgtC family Rad51 PF08423.11 gi|302348270|ref|YP_003815908.1| - 1.7e-94 315.8 0.0 2.1e-94 315.5 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|302348270|ref|YP_003815908.1| - 5.5e-16 58.8 0.1 7.7e-16 58.3 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|302348270|ref|YP_003815908.1| - 5.8e-13 49.2 0.1 1.7e-12 47.8 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|302348270|ref|YP_003815908.1| - 8.7e-12 44.9 0.0 1.4e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|302348270|ref|YP_003815908.1| - 8e-10 38.6 0.1 1.2e-09 38.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|302348270|ref|YP_003815908.1| - 9.6e-06 25.6 0.1 4.8e-05 23.4 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|302348270|ref|YP_003815908.1| - 2.4e-05 24.0 1.0 0.0012 18.6 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|302348270|ref|YP_003815908.1| - 0.00019 21.6 0.0 0.00039 20.6 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|302348270|ref|YP_003815908.1| - 0.00026 20.8 0.0 0.00097 18.9 0.0 2.0 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda AAA_22 PF13401.6 gi|302348270|ref|YP_003815908.1| - 0.0031 17.8 0.0 0.0066 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain HHH_3 PF12836.7 gi|302348270|ref|YP_003815908.1| - 0.0047 17.2 0.1 5.5 7.3 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif AAA_18 PF13238.6 gi|302348270|ref|YP_003815908.1| - 0.0056 17.2 0.0 0.018 15.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain 5_3_exonuc PF01367.20 gi|302348270|ref|YP_003815908.1| - 0.0075 16.8 0.4 0.023 15.3 0.2 1.8 2 0 0 2 2 1 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.8 gi|302348270|ref|YP_003815908.1| - 0.01 16.1 0.0 0.029 14.7 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif BAF PF02961.14 gi|302348270|ref|YP_003815908.1| - 0.014 15.9 0.0 0.034 14.6 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor HTH_23 PF13384.6 gi|302348270|ref|YP_003815908.1| - 0.054 13.3 0.0 0.3 10.9 0.0 2.3 1 1 1 2 2 2 0 Homeodomain-like domain DUF4332 PF14229.6 gi|302348270|ref|YP_003815908.1| - 0.054 13.7 0.1 0.17 12.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) Sigma70_r3 PF04539.16 gi|302348270|ref|YP_003815908.1| - 0.06 13.4 0.0 1.4 9.0 0.1 2.6 2 0 0 2 2 2 0 Sigma-70 region 3 AAA_24 PF13479.6 gi|302348270|ref|YP_003815908.1| - 0.078 12.7 0.0 0.21 11.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain HTH_31 PF13560.6 gi|302348270|ref|YP_003815908.1| - 0.084 13.2 0.4 1.7 9.0 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|302348270|ref|YP_003815908.1| - 0.1 12.5 0.5 0.96 9.4 0.1 2.7 3 1 1 4 4 3 0 MarR family HTH_29 PF13551.6 gi|302348270|ref|YP_003815908.1| - 0.12 12.4 0.0 26 4.9 0.0 3.0 3 0 0 3 3 2 0 Winged helix-turn helix PAXNEB PF05625.11 gi|302348270|ref|YP_003815908.1| - 0.13 11.4 0.1 8.8 5.4 0.1 2.1 2 0 0 2 2 2 0 PAXNEB protein Peptidase_A24 PF01478.18 gi|302348271|ref|YP_003815909.1| - 0.00021 21.6 5.9 0.00021 21.6 5.9 1.6 2 0 0 2 2 2 1 Type IV leader peptidase family HIT PF01230.23 gi|302348272|ref|YP_003815910.1| - 2.2e-12 47.5 0.0 3.8e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|302348272|ref|YP_003815910.1| - 2.2e-05 24.9 0.0 3.8e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|302348272|ref|YP_003815910.1| - 8.5e-05 22.4 0.0 0.00013 21.8 0.0 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 NTP_transf_9 PF04248.12 gi|302348272|ref|YP_003815910.1| - 0.14 12.1 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF427) DHHA1 PF02272.19 gi|302348273|ref|YP_003815911.1| - 2.4e-10 41.0 0.0 1e-09 38.9 0.0 1.9 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|302348273|ref|YP_003815911.1| - 0.01 16.1 0.1 0.021 15.1 0.1 1.5 1 0 0 1 1 1 0 DHH family Ribosomal_L38e PF01781.18 gi|302348274|ref|YP_003815912.1| - 0.00013 22.0 2.8 0.00013 22.0 2.8 1.8 1 1 1 2 2 2 1 Ribosomal L38e protein family RAB3GAP2_C PF14656.6 gi|302348274|ref|YP_003815912.1| - 0.0023 16.3 2.3 0.0025 16.1 2.3 1.1 1 0 0 1 1 1 1 Rab3 GTPase-activating protein regulatory subunit C-terminus Plasmodium_Vir PF05795.11 gi|302348274|ref|YP_003815912.1| - 0.061 12.7 6.3 0.065 12.7 6.3 1.1 1 0 0 1 1 1 0 Plasmodium vivax Vir protein Rrn6 PF10214.9 gi|302348274|ref|YP_003815912.1| - 0.21 10.1 8.0 0.21 10.0 8.0 1.0 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor MAJIN PF15077.6 gi|302348274|ref|YP_003815912.1| - 0.63 9.8 7.5 0.75 9.5 7.5 1.0 1 0 0 1 1 1 0 Membrane-anchored junction protein RR_TM4-6 PF06459.12 gi|302348274|ref|YP_003815912.1| - 6.9 6.4 11.2 7.1 6.4 11.2 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 ABC_membrane PF00664.23 gi|302348275|ref|YP_003815913.1| - 2.2e-05 24.2 3.5 0.00027 20.7 0.3 2.6 2 1 0 2 2 2 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|302348276|ref|YP_003815914.1| - 1.8e-35 122.4 0.0 3.6e-35 121.4 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|302348276|ref|YP_003815914.1| - 3.9e-09 36.7 0.6 0.00022 21.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|302348276|ref|YP_003815914.1| - 7.6e-06 26.6 0.1 1.5e-05 25.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|302348276|ref|YP_003815914.1| - 0.00076 19.9 0.6 0.0023 18.3 0.6 1.9 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|302348276|ref|YP_003815914.1| - 0.0022 17.5 0.2 0.26 10.7 0.0 2.5 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|302348276|ref|YP_003815914.1| - 0.0057 16.9 0.0 0.013 15.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|302348276|ref|YP_003815914.1| - 0.0093 15.7 0.0 0.024 14.4 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|302348276|ref|YP_003815914.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|302348276|ref|YP_003815914.1| - 0.022 14.7 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase LeuA_dimer PF08502.10 gi|302348276|ref|YP_003815914.1| - 0.027 14.4 0.1 0.065 13.1 0.1 1.6 2 0 0 2 2 2 0 LeuA allosteric (dimerisation) domain AAA_18 PF13238.6 gi|302348276|ref|YP_003815914.1| - 0.035 14.7 0.1 0.1 13.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|302348276|ref|YP_003815914.1| - 0.035 13.7 0.1 0.061 12.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|302348276|ref|YP_003815914.1| - 0.043 13.7 0.3 0.099 12.6 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|302348276|ref|YP_003815914.1| - 0.08 13.1 1.5 0.56 10.4 1.5 2.3 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|302348276|ref|YP_003815914.1| - 0.11 12.2 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_Me_trans PF04252.13 gi|302348277|ref|YP_003815915.1| - 4.9e-06 26.3 0.0 1.1e-05 25.1 0.0 1.6 2 0 0 2 2 2 1 Predicted SAM-dependent RNA methyltransferase DUF3288 PF11691.8 gi|302348277|ref|YP_003815915.1| - 0.17 11.9 0.1 0.32 11.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3288) RNA_replicase_B PF03431.13 gi|302348277|ref|YP_003815915.1| - 0.19 10.1 0.0 0.26 9.7 0.0 1.1 1 0 0 1 1 1 0 RNA replicase, beta-chain RNase_HII PF01351.18 gi|302348278|ref|YP_003815916.1| - 2.1e-37 128.9 0.0 2.6e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII FeS_assembly_P PF01883.19 gi|302348279|ref|YP_003815917.1| - 7.2e-17 61.3 0.1 1.8e-16 60.1 0.1 1.6 1 1 1 2 2 2 1 Iron-sulfur cluster assembly protein DUF1244 PF06844.11 gi|302348279|ref|YP_003815917.1| - 0.091 12.9 0.2 0.16 12.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1244) MoCF_biosynth PF00994.24 gi|302348281|ref|YP_003815919.1| - 6.7e-35 119.9 0.0 9.1e-35 119.4 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain LAL_C2 PF18603.1 gi|302348281|ref|YP_003815919.1| - 0.16 12.1 1.9 0.67 10.1 0.2 2.5 3 0 0 3 3 3 0 L-amino acid ligase C-terminal domain 2 Biotin_carb_C PF02785.19 gi|302348281|ref|YP_003815919.1| - 0.17 12.0 0.1 0.96 9.6 0.0 2.1 2 0 0 2 2 2 0 Biotin carboxylase C-terminal domain Pox_I5 PF04713.12 gi|302348282|ref|YP_003815920.1| - 0.23 11.5 6.7 0.38 10.8 6.7 1.5 1 1 0 1 1 1 0 Poxvirus protein I5 ATP-synt_D PF01813.17 gi|302348283|ref|YP_003815921.1| - 1.6e-39 135.8 1.7 1.8e-39 135.6 1.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit D eRF1_3 PF03465.15 gi|302348284|ref|YP_003815922.1| - 1.7e-18 67.1 0.0 6.1e-17 62.1 0.0 2.3 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|302348284|ref|YP_003815922.1| - 1.3e-15 57.5 0.0 3.2e-15 56.3 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 1 baeRF_family2 PF18844.1 gi|302348284|ref|YP_003815922.1| - 0.0028 17.7 7.0 0.0045 17.0 4.0 2.3 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 2 acVLRF1 PF18859.1 gi|302348284|ref|YP_003815922.1| - 0.009 16.3 5.4 0.028 14.7 1.9 2.6 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_2 PF03464.15 gi|302348284|ref|YP_003815922.1| - 0.029 14.7 0.0 0.054 13.8 0.0 1.4 1 0 0 1 1 1 0 eRF1 domain 2 baeRF_family10 PF18854.1 gi|302348284|ref|YP_003815922.1| - 0.069 13.4 0.3 0.15 12.3 0.3 1.5 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 10 HMD PF03201.16 gi|302348284|ref|YP_003815922.1| - 0.15 12.3 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase P5CR_dimer PF14748.6 gi|302348284|ref|YP_003815922.1| - 0.16 12.2 0.3 0.58 10.5 0.2 2.0 2 0 0 2 2 2 0 Pyrroline-5-carboxylate reductase dimerisation Inositol_P PF00459.25 gi|302348285|ref|YP_003815923.1| - 1.2e-24 87.3 0.0 1.4e-24 87.1 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|302348285|ref|YP_003815923.1| - 0.0007 19.1 0.1 0.0029 17.1 0.0 1.9 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase, N-terminal domain MFS_1 PF07690.16 gi|302348286|ref|YP_003815924.1| - 3.4e-12 46.0 49.2 2e-11 43.4 38.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Glyco_trans_1_4 PF13692.6 gi|302348287|ref|YP_003815925.1| - 2.7e-20 73.1 0.2 4.2e-20 72.5 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|302348287|ref|YP_003815925.1| - 5e-20 71.7 0.0 8.1e-20 71.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|302348287|ref|YP_003815925.1| - 1.9e-08 34.6 0.0 3.6e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|302348287|ref|YP_003815925.1| - 6.3e-05 23.0 0.4 0.00086 19.3 0.2 2.7 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|302348287|ref|YP_003815925.1| - 0.00058 20.3 1.3 0.003 18.0 0.3 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Epimerase PF01370.21 gi|302348288|ref|YP_003815926.1| - 3e-19 69.4 0.1 1.7e-18 67.0 0.0 2.1 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|302348288|ref|YP_003815926.1| - 5.7e-15 55.5 0.0 1.7e-14 54.0 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|302348288|ref|YP_003815926.1| - 1e-05 24.9 0.0 2.2e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|302348288|ref|YP_003815926.1| - 0.065 12.3 0.0 0.19 10.8 0.0 1.7 1 1 0 1 1 1 0 RmlD substrate binding domain UDPG_MGDP_dh_N PF03721.14 gi|302348288|ref|YP_003815926.1| - 0.17 11.5 0.0 0.34 10.5 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HTH_45 PF14947.6 gi|302348289|ref|YP_003815927.1| - 8.9e-16 57.7 0.0 9.9e-16 57.5 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|302348289|ref|YP_003815927.1| - 0.00052 19.8 0.0 0.00056 19.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|302348289|ref|YP_003815927.1| - 0.0011 18.8 0.0 0.0023 17.8 0.0 1.6 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|302348289|ref|YP_003815927.1| - 0.037 14.4 0.0 0.047 14.0 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Put_DNA-bind_N PF06971.13 gi|302348289|ref|YP_003815927.1| - 0.038 14.0 0.1 0.7 10.0 0.0 2.3 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus Spec3 PF15795.5 gi|302348290|ref|YP_003815928.1| - 0.52 10.9 4.2 0.73 10.4 1.7 2.3 1 1 1 2 2 2 0 Ectodermal ciliogenesis protein PfkB PF00294.24 gi|302348291|ref|YP_003815929.1| - 0.00029 20.2 0.0 0.00041 19.7 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase TrkA_N PF02254.18 gi|302348292|ref|YP_003815930.1| - 5.2e-16 58.9 0.9 1.1e-15 57.8 0.9 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|302348292|ref|YP_003815930.1| - 5e-08 32.7 0.0 3.8e-07 29.8 0.0 2.4 2 0 0 2 2 2 1 TrkA-C domain Phage_holin_3_2 PF04550.12 gi|302348292|ref|YP_003815930.1| - 0.075 13.6 0.7 3.2 8.4 0.1 2.8 2 0 0 2 2 2 0 Phage holin family 2 Ion_trans_2 PF07885.16 gi|302348292|ref|YP_003815930.1| - 0.62 10.1 8.9 1.1 9.3 8.9 1.4 1 0 0 1 1 1 0 Ion channel TENA_THI-4 PF03070.16 gi|302348293|ref|YP_003815931.1| - 5.2e-26 91.8 0.2 6.1e-26 91.5 0.2 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family HEAT_2 PF13646.6 gi|302348293|ref|YP_003815931.1| - 0.0086 16.4 0.1 0.065 13.6 0.1 2.3 2 1 0 2 2 2 1 HEAT repeats MFS_1 PF07690.16 gi|302348294|ref|YP_003815932.1| - 1.7e-22 79.9 55.3 1.9e-18 66.5 27.1 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily DNA_binding_1 PF01035.20 gi|302348295|ref|YP_003815933.1| - 5.1e-27 93.8 0.0 6.1e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_28 PF13518.6 gi|302348295|ref|YP_003815933.1| - 3.8e-05 23.7 0.1 6.1e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|302348295|ref|YP_003815933.1| - 8.2e-05 22.3 0.0 0.00015 21.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|302348295|ref|YP_003815933.1| - 0.00037 20.1 0.0 0.00078 19.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|302348295|ref|YP_003815933.1| - 0.001 18.8 0.0 0.0022 17.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|302348295|ref|YP_003815933.1| - 0.0016 18.0 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|302348295|ref|YP_003815933.1| - 0.0018 18.1 0.1 0.0033 17.2 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|302348295|ref|YP_003815933.1| - 0.0022 18.0 0.1 0.0065 16.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 gi|302348295|ref|YP_003815933.1| - 0.0066 15.8 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 gi|302348295|ref|YP_003815933.1| - 0.031 14.2 0.2 0.063 13.2 0.0 1.6 2 0 0 2 2 2 0 HTH domain HTH_8 PF02954.19 gi|302348295|ref|YP_003815933.1| - 0.031 14.0 0.2 0.051 13.4 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family YdaS_antitoxin PF15943.5 gi|302348295|ref|YP_003815933.1| - 0.033 14.1 0.0 0.064 13.1 0.0 1.5 1 1 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4 PF04545.16 gi|302348295|ref|YP_003815933.1| - 0.052 13.1 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|302348295|ref|YP_003815933.1| - 0.13 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|302348295|ref|YP_003815933.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_36 PF13730.6 gi|302348295|ref|YP_003815933.1| - 0.16 11.9 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1641 PF07849.11 gi|302348296|ref|YP_003815934.1| - 2.5e-11 43.3 0.3 6.9e-10 38.6 0.2 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) STI1 PF17830.1 gi|302348296|ref|YP_003815934.1| - 0.0086 16.0 0.0 0.2 11.6 0.0 2.3 2 0 0 2 2 2 1 STI1 domain Fer4_13 PF13370.6 gi|302348297|ref|YP_003815935.1| - 7.2e-17 61.7 3.2 1e-16 61.2 3.2 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|302348297|ref|YP_003815935.1| - 1.2e-14 54.8 3.4 1.4e-14 54.6 3.4 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|302348297|ref|YP_003815935.1| - 0.39 10.9 6.5 1.7 8.9 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Sod_Fe_C PF02777.18 gi|302348298|ref|YP_003815936.1| - 7.6e-35 119.2 0.1 1.1e-34 118.6 0.1 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|302348298|ref|YP_003815936.1| - 8.9e-29 99.8 0.7 8.9e-29 99.8 0.7 1.6 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain ABC_tran PF00005.27 gi|302348299|ref|YP_003815937.1| - 6.7e-22 78.5 0.0 9.3e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302348299|ref|YP_003815937.1| - 1.2e-21 77.9 0.2 1.9e-12 47.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|302348299|ref|YP_003815937.1| - 1.1e-09 38.0 0.0 0.00016 21.2 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|302348299|ref|YP_003815937.1| - 4.5e-07 30.6 0.1 7e-07 29.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|302348299|ref|YP_003815937.1| - 5.1e-06 27.0 0.0 9.3e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|302348299|ref|YP_003815937.1| - 5.3e-06 26.4 0.0 0.0073 16.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|302348299|ref|YP_003815937.1| - 2.2e-05 24.7 0.0 0.00012 22.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|302348299|ref|YP_003815937.1| - 0.00021 21.0 0.0 0.00031 20.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|302348299|ref|YP_003815937.1| - 0.00043 20.0 0.1 0.00077 19.1 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|302348299|ref|YP_003815937.1| - 0.00085 19.5 0.1 0.0061 16.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|302348299|ref|YP_003815937.1| - 0.0009 19.0 0.2 0.0032 17.2 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|302348299|ref|YP_003815937.1| - 0.0014 18.9 0.0 0.0026 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|302348299|ref|YP_003815937.1| - 0.0037 17.7 0.0 0.0096 16.3 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|302348299|ref|YP_003815937.1| - 0.0066 16.4 0.0 0.021 14.7 0.0 1.7 2 0 0 2 2 2 1 NTPase IstB_IS21 PF01695.17 gi|302348299|ref|YP_003815937.1| - 0.0079 15.9 0.3 0.093 12.5 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein ABC_ATPase PF09818.9 gi|302348299|ref|YP_003815937.1| - 0.016 14.0 0.4 0.088 11.6 0.1 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 gi|302348299|ref|YP_003815937.1| - 0.02 14.4 0.0 0.039 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|302348299|ref|YP_003815937.1| - 0.021 14.7 0.1 0.042 13.7 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|302348299|ref|YP_003815937.1| - 0.023 14.9 0.1 0.1 12.9 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|302348299|ref|YP_003815937.1| - 0.023 14.7 0.1 0.28 11.2 0.2 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|302348299|ref|YP_003815937.1| - 0.024 14.3 0.1 0.043 13.4 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|302348299|ref|YP_003815937.1| - 0.027 14.4 0.9 0.036 14.0 0.9 1.6 1 1 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|302348299|ref|YP_003815937.1| - 0.027 15.0 0.0 0.087 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|302348299|ref|YP_003815937.1| - 0.043 14.2 0.0 0.13 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|302348299|ref|YP_003815937.1| - 0.073 12.8 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Rad17 PF03215.15 gi|302348299|ref|YP_003815937.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_13 PF13166.6 gi|302348299|ref|YP_003815937.1| - 0.11 11.1 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|302348299|ref|YP_003815937.1| - 0.12 11.9 0.2 0.21 11.1 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|302348299|ref|YP_003815937.1| - 0.13 12.4 0.1 0.26 11.4 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase TsaE PF02367.17 gi|302348299|ref|YP_003815937.1| - 0.13 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|302348299|ref|YP_003815937.1| - 0.15 11.1 0.1 0.23 10.5 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|302348299|ref|YP_003815937.1| - 0.16 11.3 0.2 0.52 9.7 0.1 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MobB PF03205.14 gi|302348299|ref|YP_003815937.1| - 0.17 11.8 0.2 0.53 10.2 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.6 gi|302348299|ref|YP_003815937.1| - 0.19 11.4 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|302348299|ref|YP_003815937.1| - 0.33 8.4 0.2 0.44 8.0 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FecCD PF01032.18 gi|302348300|ref|YP_003815938.1| - 7.8e-70 235.3 38.3 9.2e-70 235.1 38.3 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|302348301|ref|YP_003815939.1| - 1.6e-27 96.6 0.0 2.4e-27 96.0 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Baculo_PEP_C PF04513.12 gi|302348301|ref|YP_003815939.1| - 0.0069 16.4 2.4 0.05 13.6 2.3 2.0 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus AI-2E_transport PF01594.16 gi|302348301|ref|YP_003815939.1| - 0.012 14.8 0.9 0.02 14.1 0.9 1.3 1 0 0 1 1 1 0 AI-2E family transporter HN PF00423.19 gi|302348301|ref|YP_003815939.1| - 0.096 11.5 2.1 0.15 10.8 2.1 1.3 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase IF-2B PF01008.17 gi|302348302|ref|YP_003815940.1| - 1.8e-29 102.8 0.0 2.2e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF2250 PF10007.9 gi|302348303|ref|YP_003815941.1| - 0.0021 18.1 0.0 0.0064 16.6 0.0 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Sun2_CC2 PF18580.1 gi|302348303|ref|YP_003815941.1| - 0.19 12.0 0.0 5.8 7.2 0.0 2.7 3 0 0 3 3 3 0 SUN2 coiled coil domain 2 MS_channel PF00924.18 gi|302348304|ref|YP_003815942.1| - 6.9e-29 100.9 1.4 6.9e-29 100.9 1.4 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel Ion_trans PF00520.31 gi|302348304|ref|YP_003815942.1| - 0.28 10.4 6.9 0.43 9.8 6.9 1.3 1 0 0 1 1 1 0 Ion transport protein CopD PF05425.13 gi|302348304|ref|YP_003815942.1| - 2.2 8.7 14.7 0.93 9.9 11.4 2.0 1 1 1 2 2 2 0 Copper resistance protein D MFS_1 PF07690.16 gi|302348305|ref|YP_003815943.1| - 3.3e-24 85.5 50.8 3.7e-15 55.7 19.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1158 PF06643.11 gi|302348305|ref|YP_003815943.1| - 0.18 12.3 2.4 1.1 9.9 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1158) TrmB PF01978.19 gi|302348306|ref|YP_003815944.1| - 3.6e-17 62.0 0.1 8.3e-17 60.8 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|302348306|ref|YP_003815944.1| - 0.0021 18.2 0.1 0.025 14.7 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|302348306|ref|YP_003815944.1| - 0.03 14.7 0.0 0.098 13.0 0.0 1.9 1 1 0 1 1 1 0 Transcriptional regulator E2F_TDP PF02319.20 gi|302348306|ref|YP_003815944.1| - 0.03 14.4 0.0 0.066 13.3 0.0 1.6 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain MarR_2 PF12802.7 gi|302348306|ref|YP_003815944.1| - 0.056 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 MarR family Lactamase_B PF00753.27 gi|302348307|ref|YP_003815945.1| - 5.1e-20 72.3 2.0 7.3e-20 71.8 2.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|302348307|ref|YP_003815945.1| - 5.5e-05 22.8 0.1 0.00013 21.6 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|302348307|ref|YP_003815945.1| - 0.00094 19.1 0.1 0.0018 18.2 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain EamA PF00892.20 gi|302348308|ref|YP_003815946.1| - 7.8e-19 68.2 41.5 8e-10 39.0 15.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|302348308|ref|YP_003815946.1| - 0.017 14.5 15.2 0.061 12.7 3.8 3.0 1 1 0 2 2 2 0 Triose-phosphate Transporter family UPF0147 PF03685.13 gi|302348309|ref|YP_003815947.1| - 1.9e-34 117.6 0.4 2.1e-34 117.4 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|302348309|ref|YP_003815947.1| - 0.0022 18.2 0.3 0.13 12.5 0.1 2.2 1 1 0 2 2 2 2 Uncharacterised protein family (UPF0253) YCII PF03795.14 gi|302348310|ref|YP_003815948.1| - 0.015 15.7 0.0 0.022 15.2 0.0 1.3 1 0 0 1 1 1 0 YCII-related domain AMP-binding PF00501.28 gi|302348311|ref|YP_003815949.1| - 1.5e-91 307.1 0.0 1.7e-91 306.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|302348311|ref|YP_003815949.1| - 5.1e-16 59.4 0.5 2e-15 57.5 0.0 2.2 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain HycI PF01750.18 gi|302348311|ref|YP_003815949.1| - 0.055 13.3 0.1 0.13 12.1 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase maturation protease malic PF00390.19 gi|302348312|ref|YP_003815950.1| - 3.5e-22 79.1 0.0 1.8e-15 57.2 0.0 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|302348312|ref|YP_003815950.1| - 1.7e-18 66.8 2.9 1.9e-16 60.1 2.9 2.6 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain Acetyltransf_10 PF13673.7 gi|302348313|ref|YP_003815951.1| - 9e-14 51.5 0.0 1.2e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|302348313|ref|YP_003815951.1| - 9.7e-13 48.4 0.0 1.2e-12 48.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|302348313|ref|YP_003815951.1| - 2e-10 40.9 0.0 3e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|302348313|ref|YP_003815951.1| - 4e-07 29.9 0.1 8.9e-07 28.8 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|302348313|ref|YP_003815951.1| - 5.8e-06 26.4 0.2 2.8e-05 24.2 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|302348313|ref|YP_003815951.1| - 8.5e-06 25.8 0.1 1.6e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 gi|302348313|ref|YP_003815951.1| - 0.0012 18.7 0.0 0.0025 17.8 0.0 1.5 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase PanZ PF12568.8 gi|302348313|ref|YP_003815951.1| - 0.0039 16.9 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Peptidase_S41_N PF11918.8 gi|302348313|ref|YP_003815951.1| - 0.066 13.4 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 N-terminal domain of Peptidase_S41 in eukaryotic IRBP Acetyltransf_1 PF00583.25 gi|302348314|ref|YP_003815952.1| - 7.8e-13 48.7 0.0 9.1e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|302348314|ref|YP_003815952.1| - 1.8e-10 40.9 0.0 2.3e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|302348314|ref|YP_003815952.1| - 2.1e-10 40.9 0.0 3e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|302348314|ref|YP_003815952.1| - 6.2e-08 32.8 0.0 9.6e-08 32.2 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|302348314|ref|YP_003815952.1| - 2.3e-06 27.5 0.0 4.8e-06 26.5 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|302348314|ref|YP_003815952.1| - 0.00015 21.9 0.0 0.00027 21.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain SepF PF04472.12 gi|302348314|ref|YP_003815952.1| - 0.0015 18.7 1.3 0.29 11.4 0.2 2.3 1 1 1 2 2 2 2 Cell division protein SepF Acetyltransf_4 PF13420.7 gi|302348314|ref|YP_003815952.1| - 0.0016 18.6 0.1 0.002 18.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|302348314|ref|YP_003815952.1| - 0.0017 18.4 0.0 0.0028 17.7 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase AstA PF04958.12 gi|302348314|ref|YP_003815952.1| - 0.0051 15.4 0.0 0.094 11.2 0.0 2.0 2 0 0 2 2 2 1 Arginine N-succinyltransferase beta subunit Acetyltransf_16 PF05301.11 gi|302348314|ref|YP_003815952.1| - 0.027 14.2 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 DUF4468 PF14730.6 gi|302348314|ref|YP_003815952.1| - 0.046 14.0 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4468) with TBP-like fold Acetyltransf_15 PF17013.5 gi|302348314|ref|YP_003815952.1| - 0.062 12.8 0.2 0.13 11.8 0.2 1.7 1 1 0 1 1 1 0 Putative acetyl-transferase CCDC74_C PF14917.6 gi|302348314|ref|YP_003815952.1| - 0.12 12.9 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 Coiled coil protein 74, C terminal Tsc35 PF15079.6 gi|302348314|ref|YP_003815952.1| - 0.15 11.7 0.1 0.21 11.1 0.1 1.2 1 0 0 1 1 1 0 Testis-specific protein 35 PanZ PF12568.8 gi|302348314|ref|YP_003815952.1| - 0.15 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Fe_dep_repress PF01325.19 gi|302348315|ref|YP_003815953.1| - 4.3e-13 49.2 0.0 9.8e-13 48.1 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|302348315|ref|YP_003815953.1| - 7.1e-12 45.2 0.0 1.1e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|302348315|ref|YP_003815953.1| - 5.1e-05 23.1 0.0 0.00017 21.4 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|302348315|ref|YP_003815953.1| - 0.0011 18.9 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF505 PF04458.12 gi|302348315|ref|YP_003815953.1| - 0.028 12.8 0.0 0.034 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_24 PF13412.6 gi|302348315|ref|YP_003815953.1| - 0.063 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|302348315|ref|YP_003815953.1| - 0.069 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|302348315|ref|YP_003815953.1| - 0.074 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|302348315|ref|YP_003815953.1| - 0.092 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MNHE PF01899.16 gi|302348315|ref|YP_003815953.1| - 0.16 11.7 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit RHH_1 PF01402.21 gi|302348316|ref|YP_003815954.1| - 1.7e-08 34.1 0.2 3.3e-08 33.2 0.2 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|302348316|ref|YP_003815954.1| - 6.2e-07 29.3 0.0 1.1e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain NikR_C PF08753.11 gi|302348316|ref|YP_003815954.1| - 1.4e-05 25.1 0.0 2.2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_5 PF07878.11 gi|302348316|ref|YP_003815954.1| - 0.022 14.6 0.1 0.047 13.6 0.1 1.5 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 tRNA-synt_1b PF00579.25 gi|302348317|ref|YP_003815955.1| - 5e-42 144.2 0.0 5.9e-42 144.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) MarR_2 PF12802.7 gi|302348318|ref|YP_003815956.1| - 1.2e-09 37.9 0.0 2.4e-08 33.7 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|302348318|ref|YP_003815956.1| - 5.4e-09 35.5 0.2 1.9e-08 33.7 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|302348318|ref|YP_003815956.1| - 7.4e-09 35.5 0.1 2.3e-08 34.0 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|302348318|ref|YP_003815956.1| - 1.5e-06 27.9 0.1 1e-05 25.3 0.1 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|302348318|ref|YP_003815956.1| - 2.9e-06 27.1 0.0 7.2e-06 25.8 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|302348318|ref|YP_003815956.1| - 7.4e-06 25.7 0.0 2.7e-05 23.9 0.0 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|302348318|ref|YP_003815956.1| - 1.3e-05 25.0 0.3 0.00014 21.6 0.0 2.6 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|302348318|ref|YP_003815956.1| - 0.00043 20.1 0.0 0.0011 18.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|302348318|ref|YP_003815956.1| - 0.0005 20.5 0.1 0.0023 18.4 0.0 2.3 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_CodY PF08222.11 gi|302348318|ref|YP_003815956.1| - 0.0071 15.9 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_11 PF08279.12 gi|302348318|ref|YP_003815956.1| - 0.0093 15.9 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|302348318|ref|YP_003815956.1| - 0.011 15.6 0.1 0.042 13.8 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|302348318|ref|YP_003815956.1| - 0.034 14.4 0.0 0.083 13.1 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|302348318|ref|YP_003815956.1| - 0.07 12.7 0.1 0.22 11.1 0.1 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_WhiA PF02650.14 gi|302348318|ref|YP_003815956.1| - 0.087 13.2 0.0 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 WhiA C-terminal HTH domain AcylCoA_dehyd_C PF12186.8 gi|302348318|ref|YP_003815956.1| - 0.14 12.3 0.2 3.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase C terminal Kdo PF06293.14 gi|302348319|ref|YP_003815957.1| - 0.0021 17.4 0.0 0.013 14.9 0.0 2.2 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family MJ1316 PF04457.12 gi|302348320|ref|YP_003815958.1| - 1.3e-08 35.4 0.0 1.6e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain RA PF00788.23 gi|302348320|ref|YP_003815958.1| - 0.068 13.8 0.0 0.074 13.7 0.0 1.2 1 0 0 1 1 1 0 Ras association (RalGDS/AF-6) domain HIT PF01230.23 gi|302348321|ref|YP_003815959.1| - 7.8e-26 90.7 0.5 5.5e-25 88.0 0.1 1.9 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|302348321|ref|YP_003815959.1| - 6.7e-13 49.1 0.0 1.1e-12 48.4 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding DUF3791 PF12668.7 gi|302348321|ref|YP_003815959.1| - 0.017 15.1 0.1 0.088 12.9 0.0 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3791) LuxC PF05893.14 gi|302348321|ref|YP_003815959.1| - 0.047 12.7 0.0 0.066 12.2 0.0 1.1 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) CwfJ_C_1 PF04677.15 gi|302348321|ref|YP_003815959.1| - 0.059 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 PHP_C PF13263.6 gi|302348322|ref|YP_003815960.1| - 3.1e-15 55.6 0.0 9.6e-15 54.1 0.0 1.9 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|302348322|ref|YP_003815960.1| - 1.1e-06 29.0 0.0 1.3e-06 28.8 0.0 1.4 1 1 0 1 1 1 1 PHP domain DUF2139 PF09910.9 gi|302348323|ref|YP_003815961.1| - 2.2e-162 540.0 0.1 2.6e-162 539.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) Cyclase PF04199.13 gi|302348324|ref|YP_003815962.1| - 3e-22 79.3 0.0 4.1e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Radical_SAM PF04055.21 gi|302348325|ref|YP_003815963.1| - 1.1e-25 90.9 0.1 7.9e-24 84.9 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|302348325|ref|YP_003815963.1| - 1.5e-24 86.4 0.0 5.9e-24 84.4 0.0 1.9 2 0 0 2 2 2 1 B12 binding domain Radical_SAM_N PF08497.10 gi|302348325|ref|YP_003815963.1| - 0.00064 19.1 0.0 1 8.5 0.0 3.1 4 0 0 4 4 4 2 Radical SAM N-terminal Fer4_12 PF13353.6 gi|302348325|ref|YP_003815963.1| - 0.00069 19.9 0.0 0.0012 19.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|302348325|ref|YP_003815963.1| - 0.01 16.0 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Glyco_trans_4_2 PF13477.6 gi|302348325|ref|YP_003815963.1| - 0.026 14.6 0.0 6.4 6.8 0.0 2.5 2 0 0 2 2 2 0 Glycosyl transferase 4-like Aldolase PF01081.19 gi|302348325|ref|YP_003815963.1| - 0.11 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 KDPG and KHG aldolase Peptidase_C16 PF01831.17 gi|302348325|ref|YP_003815963.1| - 0.17 11.6 0.0 0.28 10.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase C16 family Radical_SAM PF04055.21 gi|302348326|ref|YP_003815964.1| - 2.9e-27 96.1 0.0 9.2e-27 94.5 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|302348326|ref|YP_003815964.1| - 6e-12 45.9 0.1 1.5e-11 44.7 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|302348326|ref|YP_003815964.1| - 7.5e-09 36.0 0.0 2.1e-08 34.5 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain HMGL-like PF00682.19 gi|302348326|ref|YP_003815964.1| - 4.5e-07 29.7 0.0 7.6e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Fer4_14 PF13394.6 gi|302348326|ref|YP_003815964.1| - 2.2e-06 27.8 0.0 4.2e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|302348326|ref|YP_003815964.1| - 0.044 13.2 0.0 0.15 11.5 0.0 2.0 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Pyridox_ox_2 PF12900.7 gi|302348326|ref|YP_003815964.1| - 0.051 13.6 0.1 2 8.4 0.1 2.4 2 0 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase HTH_22 PF13309.6 gi|302348326|ref|YP_003815964.1| - 0.15 12.2 0.0 0.4 10.8 0.0 1.6 1 0 0 1 1 1 0 HTH domain DUF4382 PF14321.6 gi|302348327|ref|YP_003815965.1| - 2.5e-11 44.0 0.0 3e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) Spore_YtfJ PF09579.10 gi|302348327|ref|YP_003815965.1| - 0.88 9.8 4.5 1.9 8.7 0.6 2.2 2 0 0 2 2 2 0 Sporulation protein YtfJ (Spore_YtfJ) GHMP_kinases_C PF08544.13 gi|302348328|ref|YP_003815966.1| - 1.1e-08 35.3 0.0 3.5e-08 33.7 0.0 1.9 1 0 0 1 1 1 1 GHMP kinases C terminal DUF1464 PF07318.12 gi|302348329|ref|YP_003815967.1| - 1.1e-83 281.1 0.8 1.3e-83 280.8 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) NTPase_I-T PF01931.18 gi|302348330|ref|YP_003815968.1| - 9.7e-41 139.3 0.0 1.1e-40 139.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Lactamase_B PF00753.27 gi|302348331|ref|YP_003815969.1| - 1.8e-10 41.2 0.5 2.9e-10 40.5 0.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|302348331|ref|YP_003815969.1| - 1.2e-05 25.6 0.0 3.7e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|302348331|ref|YP_003815969.1| - 0.0047 16.5 0.0 0.0081 15.7 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain CheB_methylest PF01339.17 gi|302348331|ref|YP_003815969.1| - 0.15 11.8 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 CheB methylesterase AP_endonuc_2 PF01261.24 gi|302348332|ref|YP_003815970.1| - 2.2e-24 86.1 0.0 2.9e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF692 PF05114.13 gi|302348332|ref|YP_003815970.1| - 0.08 12.1 0.1 0.26 10.4 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF692) SinI PF08671.10 gi|302348332|ref|YP_003815970.1| - 0.12 12.2 0.6 0.82 9.5 0.0 2.3 2 0 0 2 2 2 0 Anti-repressor SinI tRNA-Thr_ED PF08915.11 gi|302348333|ref|YP_003815971.1| - 2e-39 134.8 0.0 3e-39 134.2 0.0 1.3 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|302348333|ref|YP_003815971.1| - 1e-17 64.1 0.5 2.7e-17 62.7 0.2 1.9 2 0 0 2 2 2 1 Anticodon binding domain HypA PF01155.19 gi|302348334|ref|YP_003815972.1| - 0.014 15.4 0.2 0.015 15.3 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37e PF01907.19 gi|302348334|ref|YP_003815972.1| - 0.016 15.4 1.2 0.15 12.3 0.1 2.0 2 0 0 2 2 2 0 Ribosomal protein L37e DUF3797 PF12677.7 gi|302348334|ref|YP_003815972.1| - 0.074 12.9 1.8 0.22 11.5 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_4 PF13717.6 gi|302348334|ref|YP_003815972.1| - 0.12 12.4 2.6 2.4 8.1 2.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_L33 PF00471.20 gi|302348334|ref|YP_003815972.1| - 0.12 12.8 5.2 1.4 9.4 5.2 2.1 1 1 0 1 1 1 0 Ribosomal protein L33 zinc_ribbon_2 PF13240.6 gi|302348334|ref|YP_003815972.1| - 0.2 11.4 2.9 8.6 6.2 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_KTR PF14205.6 gi|302348334|ref|YP_003815972.1| - 0.34 10.8 3.1 0.46 10.3 3.1 1.5 1 1 0 1 1 1 0 Cysteine-rich KTR Zn_ribbon_SprT PF17283.2 gi|302348334|ref|YP_003815972.1| - 1.4 8.9 8.2 17 5.4 8.2 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain ABC2_membrane PF01061.24 gi|302348335|ref|YP_003815973.1| - 0.0013 18.2 20.5 0.0013 18.2 20.5 2.2 1 1 1 2 2 2 2 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|302348335|ref|YP_003815973.1| - 0.0033 16.6 18.1 0.0033 16.6 18.1 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|302348336|ref|YP_003815974.1| - 2e-23 83.4 0.0 3e-23 82.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302348336|ref|YP_003815974.1| - 1.9e-11 44.4 0.0 1.1e-05 25.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|302348336|ref|YP_003815974.1| - 0.00028 20.4 0.1 0.17 11.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|302348336|ref|YP_003815974.1| - 0.0011 19.5 0.0 0.0017 18.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|302348336|ref|YP_003815974.1| - 0.0048 16.6 0.0 0.008 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.6 gi|302348336|ref|YP_003815974.1| - 0.014 14.0 0.0 0.019 13.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|302348336|ref|YP_003815974.1| - 0.02 15.2 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|302348336|ref|YP_003815974.1| - 0.021 14.7 0.0 0.055 13.4 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|302348336|ref|YP_003815974.1| - 0.025 14.3 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|302348336|ref|YP_003815974.1| - 0.044 13.7 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|302348336|ref|YP_003815974.1| - 0.059 13.6 0.0 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|302348336|ref|YP_003815974.1| - 0.071 12.8 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|302348336|ref|YP_003815974.1| - 0.12 12.7 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Lyase_1 PF00206.20 gi|302348337|ref|YP_003815975.1| - 9.1e-86 288.1 0.0 1.6e-85 287.3 0.0 1.4 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|302348337|ref|YP_003815975.1| - 9.8e-06 25.9 0.4 0.00023 21.5 0.0 3.2 3 0 0 3 3 3 1 Fumarase C C-terminus DUF3368 PF11848.8 gi|302348337|ref|YP_003815975.1| - 0.04 13.7 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3368) Aldo_ket_red PF00248.21 gi|302348338|ref|YP_003815976.1| - 6.8e-60 202.7 0.0 4.4e-58 196.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Asparaginase_C PF17763.1 gi|302348338|ref|YP_003815976.1| - 0.11 12.7 0.0 38 4.5 0.0 3.1 2 1 0 2 2 2 0 Glutaminase/Asparaginase C-terminal domain AMP-binding PF00501.28 gi|302348339|ref|YP_003815977.1| - 1.4e-74 251.2 0.0 1.7e-74 250.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|302348339|ref|YP_003815977.1| - 8.2e-16 58.8 0.4 3.2e-15 56.8 0.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|302348339|ref|YP_003815977.1| - 8.5e-14 51.2 0.0 2.5e-13 49.7 0.0 1.9 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DUF1634 PF07843.11 gi|302348340|ref|YP_003815978.1| - 2.3e-26 91.8 10.5 2.7e-26 91.6 10.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) TauE PF01925.19 gi|302348341|ref|YP_003815979.1| - 2.6e-40 138.5 25.9 3e-40 138.3 25.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE HTH_31 PF13560.6 gi|302348342|ref|YP_003815980.1| - 7.2e-10 39.1 0.8 1.2e-09 38.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|302348342|ref|YP_003815980.1| - 1.6e-09 37.7 0.0 4.5e-09 36.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|302348342|ref|YP_003815980.1| - 3.5e-07 30.1 0.0 1e-06 28.7 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|302348342|ref|YP_003815980.1| - 0.0062 16.6 0.0 0.0098 16.0 0.0 1.3 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_37 PF13744.6 gi|302348342|ref|YP_003815980.1| - 0.014 15.4 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_25 PF13413.6 gi|302348342|ref|YP_003815980.1| - 0.025 14.4 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RWP-RK PF02042.15 gi|302348342|ref|YP_003815980.1| - 0.03 14.3 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 RWP-RK domain Sigma70_r4_2 PF08281.12 gi|302348342|ref|YP_003815980.1| - 0.054 13.2 0.0 0.2 11.4 0.0 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 DUF134 PF02001.16 gi|302348342|ref|YP_003815980.1| - 0.08 13.5 0.0 0.59 10.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF134 NAC PF01849.18 gi|302348343|ref|YP_003815981.1| - 6.3e-11 42.1 0.4 1.2e-10 41.2 0.4 1.5 1 0 0 1 1 1 1 NAC domain Beta-Casp PF10996.8 gi|302348344|ref|YP_003815982.1| - 7.6e-16 58.4 0.0 1.9e-15 57.1 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|302348344|ref|YP_003815982.1| - 2.5e-13 50.5 0.6 1.1e-12 48.4 0.4 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|302348344|ref|YP_003815982.1| - 5.3e-10 39.1 0.0 1.2e-09 38.0 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|302348344|ref|YP_003815982.1| - 6.9e-09 35.5 0.1 3.5e-08 33.2 0.1 2.0 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|302348344|ref|YP_003815982.1| - 1.1e-07 31.5 0.0 2e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|302348344|ref|YP_003815982.1| - 0.00088 19.2 0.2 0.055 13.4 0.0 2.7 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Glyco_hydro_42M PF08532.10 gi|302348344|ref|YP_003815982.1| - 0.041 13.4 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 Beta-galactosidase trimerisation domain Hydrolase_3 PF08282.12 gi|302348345|ref|YP_003815983.1| - 5.7e-22 78.7 0.0 1e-10 41.8 0.0 2.6 1 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|302348345|ref|YP_003815983.1| - 8.2e-07 29.5 0.2 0.001 19.4 0.0 3.1 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|302348345|ref|YP_003815983.1| - 8.4e-05 23.0 1.1 0.36 11.2 0.0 3.7 1 1 2 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|302348345|ref|YP_003815983.1| - 0.078 13.1 0.0 0.41 10.8 0.0 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase CoA_trans PF01144.23 gi|302348346|ref|YP_003815984.1| - 3.7e-48 163.8 0.4 4.5e-42 143.9 0.0 2.9 2 1 0 2 2 2 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|302348346|ref|YP_003815984.1| - 0.00026 19.5 0.2 0.0036 15.7 0.1 2.1 2 0 0 2 2 2 2 Malonate decarboxylase, alpha subunit, transporter Lip_prot_lig_C PF10437.9 gi|302348347|ref|YP_003815985.1| - 5.9e-09 35.8 0.0 6.6e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus BPL_LplA_LipB PF03099.19 gi|302348348|ref|YP_003815986.1| - 8e-13 48.4 0.0 1.1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF366 PF04017.12 gi|302348348|ref|YP_003815986.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF366) CBS PF00571.28 gi|302348349|ref|YP_003815987.1| - 2e-30 105.0 6.4 2.9e-16 59.7 1.8 2.1 2 0 0 2 2 2 2 CBS domain Peptidase_S29 PF02907.15 gi|302348349|ref|YP_003815987.1| - 0.0016 18.2 0.1 0.013 15.3 0.1 1.9 1 1 1 2 2 2 1 Hepatitis C virus NS3 protease Robl_LC7 PF03259.17 gi|302348349|ref|YP_003815987.1| - 0.033 14.0 0.5 2.6 7.9 0.1 2.3 2 0 0 2 2 2 0 Roadblock/LC7 domain PRC PF05239.16 gi|302348349|ref|YP_003815987.1| - 0.056 13.5 0.2 0.25 11.4 0.0 2.0 2 0 0 2 2 2 0 PRC-barrel domain Peptidase_S7 PF00949.21 gi|302348349|ref|YP_003815987.1| - 0.097 12.5 0.1 3.4 7.5 0.0 2.2 2 0 0 2 2 2 0 Peptidase S7, Flavivirus NS3 serine protease DUF3659 PF12396.8 gi|302348349|ref|YP_003815987.1| - 0.13 12.2 0.3 13 5.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) DUF998 PF06197.13 gi|302348350|ref|YP_003815988.1| - 4.2e-25 88.4 13.6 5e-25 88.2 13.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF5353 PF17304.2 gi|302348350|ref|YP_003815988.1| - 2 8.2 6.1 0.35 10.6 2.2 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5353) DEAD PF00270.29 gi|302348351|ref|YP_003815989.1| - 1.6e-15 57.3 0.0 3.6e-14 52.9 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|302348351|ref|YP_003815989.1| - 2.3e-14 53.7 0.0 5.3e-11 42.9 0.0 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|302348351|ref|YP_003815989.1| - 0.00073 19.6 0.0 0.0017 18.4 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Oxidored_q6 PF01058.22 gi|302348351|ref|YP_003815989.1| - 0.034 14.0 0.0 0.1 12.4 0.0 1.8 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase, 20 Kd subunit TFIIB PF00382.19 gi|302348352|ref|YP_003815990.1| - 2.7e-12 46.6 0.3 1.1e-10 41.4 0.0 2.2 2 0 0 2 2 2 1 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|302348352|ref|YP_003815990.1| - 2.3e-08 33.4 1.5 3.9e-08 32.7 1.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|302348352|ref|YP_003815990.1| - 6.1e-05 22.6 0.9 0.00018 21.1 0.9 1.9 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|302348352|ref|YP_003815990.1| - 0.0011 18.2 3.0 0.0023 17.3 3.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|302348352|ref|YP_003815990.1| - 0.0019 18.1 0.3 0.0037 17.2 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|302348352|ref|YP_003815990.1| - 0.0023 17.6 0.1 0.0052 16.4 0.1 1.6 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|302348352|ref|YP_003815990.1| - 0.0026 17.6 1.7 0.0042 17.0 1.7 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.12 gi|302348352|ref|YP_003815990.1| - 0.0043 17.0 1.1 0.013 15.4 1.1 1.8 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|302348352|ref|YP_003815990.1| - 0.0083 16.1 0.3 0.013 15.6 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|302348352|ref|YP_003815990.1| - 0.014 15.3 2.5 0.024 14.5 2.5 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Sigma70_r4 PF04545.16 gi|302348352|ref|YP_003815990.1| - 0.022 14.3 0.0 0.064 12.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|302348352|ref|YP_003815990.1| - 0.023 14.2 0.0 0.051 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|302348352|ref|YP_003815990.1| - 0.042 13.9 0.1 0.17 12.0 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix Cyclin_C PF02984.19 gi|302348352|ref|YP_003815990.1| - 0.044 13.9 0.0 0.084 13.0 0.0 1.3 1 0 0 1 1 1 0 Cyclin, C-terminal domain HTH_23 PF13384.6 gi|302348352|ref|YP_003815990.1| - 0.06 13.2 0.1 0.16 11.8 0.0 1.7 2 0 0 2 2 1 0 Homeodomain-like domain A2L_zn_ribbon PF08792.10 gi|302348352|ref|YP_003815990.1| - 0.083 12.6 1.9 0.19 11.5 1.9 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain Trm112p PF03966.16 gi|302348352|ref|YP_003815990.1| - 0.095 13.3 0.2 0.31 11.7 0.2 1.9 1 0 0 1 1 1 0 Trm112p-like protein HTH_37 PF13744.6 gi|302348352|ref|YP_003815990.1| - 0.16 11.9 0.0 0.62 10.1 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain ADK_lid PF05191.14 gi|302348352|ref|YP_003815990.1| - 0.18 11.8 0.9 2.8 8.0 0.0 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_Tnp_IS1595 PF12760.7 gi|302348352|ref|YP_003815990.1| - 0.21 11.6 0.6 13 5.8 0.0 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|302348352|ref|YP_003815990.1| - 0.24 11.1 1.2 0.45 10.2 1.2 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.9 gi|302348352|ref|YP_003815990.1| - 0.28 11.3 2.4 1.8 8.8 2.4 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|302348352|ref|YP_003815990.1| - 0.35 10.8 2.7 4.4 7.3 2.7 2.2 1 1 0 1 1 1 0 Nudix N-terminal DNA_ligase_ZBD PF03119.16 gi|302348352|ref|YP_003815990.1| - 0.43 10.7 3.4 3.7 7.7 3.6 2.1 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Rubredoxin PF00301.20 gi|302348352|ref|YP_003815990.1| - 0.66 10.0 2.3 1.6 8.8 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Auto_anti-p27 PF06677.12 gi|302348352|ref|YP_003815990.1| - 2.4 8.4 7.5 0.44 10.8 3.8 1.8 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Gar1 PF04410.14 gi|302348353|ref|YP_003815991.1| - 1.6e-10 41.0 0.0 1.8e-10 40.8 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Lactamase_B PF00753.27 gi|302348354|ref|YP_003815992.1| - 4e-32 111.8 2.0 4.8e-32 111.6 2.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|302348354|ref|YP_003815992.1| - 5e-06 26.2 0.0 5.7e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|302348354|ref|YP_003815992.1| - 1.2e-05 25.0 0.0 0.0027 17.2 0.0 2.1 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Response_reg PF00072.24 gi|302348354|ref|YP_003815992.1| - 0.19 11.9 0.0 1.5 9.0 0.0 2.0 2 0 0 2 2 2 0 Response regulator receiver domain MFS_1 PF07690.16 gi|302348357|ref|YP_003815995.1| - 6.1e-41 140.5 54.4 6.1e-41 140.5 54.4 2.6 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|302348357|ref|YP_003815995.1| - 1e-05 24.6 10.7 1e-05 24.6 10.7 2.9 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|302348357|ref|YP_003815995.1| - 0.0054 15.2 21.6 0.03 12.7 9.1 2.5 2 1 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 gi|302348357|ref|YP_003815995.1| - 0.096 11.0 11.2 0.15 10.3 0.9 2.8 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family DUF3040 PF11239.8 gi|302348357|ref|YP_003815995.1| - 0.58 10.5 0.1 0.58 10.5 0.1 6.2 3 2 2 5 5 5 0 Protein of unknown function (DUF3040) DUF72 PF01904.18 gi|302348358|ref|YP_003815996.1| - 6.5e-33 114.7 0.0 8.1e-33 114.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|302348358|ref|YP_003815996.1| - 0.0083 15.6 0.1 0.016 14.6 0.1 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel TRCF PF03461.15 gi|302348358|ref|YP_003815996.1| - 0.064 13.6 0.0 0.32 11.4 0.0 1.9 2 0 0 2 2 2 0 TRCF domain CDP-OH_P_transf PF01066.21 gi|302348359|ref|YP_003815997.1| - 2.7e-13 50.5 3.7 1.2e-11 45.2 1.7 2.5 2 1 0 2 2 2 2 CDP-alcohol phosphatidyltransferase Polysacc_deac_1 PF01522.21 gi|302348360|ref|YP_003815998.1| - 5.6e-18 65.0 0.0 8.8e-18 64.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2194 PF09960.9 gi|302348360|ref|YP_003815998.1| - 0.00048 18.6 0.0 0.00064 18.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2194) Glycos_transf_1 PF00534.20 gi|302348361|ref|YP_003815999.1| - 4.5e-30 104.4 0.0 6.2e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|302348361|ref|YP_003815999.1| - 2.2e-23 83.1 0.1 4e-23 82.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|302348361|ref|YP_003815999.1| - 3.4e-22 79.2 0.0 8.5e-22 77.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|302348361|ref|YP_003815999.1| - 2.2e-15 57.4 1.4 8.1e-15 55.6 0.1 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|302348361|ref|YP_003815999.1| - 3.9e-08 33.6 0.0 8.4e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|302348361|ref|YP_003815999.1| - 0.00029 20.6 0.0 0.028 14.1 0.0 2.3 2 0 0 2 2 2 1 Starch synthase catalytic domain PIGA PF08288.12 gi|302348361|ref|YP_003815999.1| - 0.00029 21.4 0.0 0.00055 20.5 0.0 1.4 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Glyco_trans_4_2 PF13477.6 gi|302348361|ref|YP_003815999.1| - 0.0019 18.2 0.0 0.017 15.2 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like LPG_synthase_TM PF03706.13 gi|302348362|ref|YP_003816000.1| - 7.9e-15 55.2 35.1 5.5e-14 52.4 35.1 1.9 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region adh_short_C2 PF13561.6 gi|302348363|ref|YP_003816001.1| - 7.8e-61 205.6 0.0 9.5e-61 205.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|302348363|ref|YP_003816001.1| - 7.3e-52 175.7 0.0 8.8e-52 175.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|302348363|ref|YP_003816001.1| - 3.3e-13 49.9 0.0 9.7e-13 48.4 0.0 1.6 1 1 1 2 2 2 1 KR domain DUF1776 PF08643.10 gi|302348363|ref|YP_003816001.1| - 5.2e-05 22.8 0.0 0.00024 20.6 0.0 1.8 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 gi|302348363|ref|YP_003816001.1| - 0.13 11.7 0.0 0.35 10.3 0.0 1.7 1 1 1 2 2 2 0 NAD dependent epimerase/dehydratase family TauE PF01925.19 gi|302348364|ref|YP_003816002.1| - 7.1e-45 153.5 42.5 8.1e-45 153.3 42.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1304 PF06993.12 gi|302348364|ref|YP_003816002.1| - 5.9 6.9 10.3 1.6 8.8 3.7 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF1304) Inos-1-P_synth PF01658.17 gi|302348365|ref|YP_003816003.1| - 3.1e-23 82.1 0.0 7.6e-23 80.9 0.0 1.7 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|302348365|ref|YP_003816003.1| - 0.05 13.0 0.0 0.092 12.1 0.0 1.5 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase LSM PF01423.22 gi|302348366|ref|YP_003816004.1| - 5.8e-18 64.3 0.5 6.8e-18 64.1 0.5 1.1 1 0 0 1 1 1 1 LSM domain FAA_hydrolase PF01557.18 gi|302348367|ref|YP_003816005.1| - 7.2e-57 192.6 0.0 8.6e-57 192.3 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Aldo_ket_red PF00248.21 gi|302348368|ref|YP_003816006.1| - 2.8e-63 213.9 0.0 3.5e-63 213.5 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family DUF3143 PF11341.8 gi|302348368|ref|YP_003816006.1| - 0.03 14.7 0.1 0.14 12.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3143) GCV_T PF01571.21 gi|302348369|ref|YP_003816007.1| - 3.3e-66 223.3 0.0 4.3e-66 222.9 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|302348369|ref|YP_003816007.1| - 9.4e-15 54.3 0.1 1.7e-14 53.5 0.1 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Amidohydro_3 PF07969.11 gi|302348370|ref|YP_003816008.1| - 3.4e-80 270.8 0.4 3.8e-80 270.6 0.4 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|302348370|ref|YP_003816008.1| - 1.1e-14 54.6 0.0 4.4e-10 39.4 0.0 3.1 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|302348371|ref|YP_003816009.1| - 5.3e-22 78.6 1.0 3.6e-21 75.9 1.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|302348371|ref|YP_003816009.1| - 1.6e-17 64.1 11.7 1.1e-13 51.5 2.8 2.9 2 1 0 3 3 3 2 Amidohydrolase family Lyase_aromatic PF00221.19 gi|302348372|ref|YP_003816010.1| - 2.8e-119 398.8 7.8 3.5e-119 398.5 7.8 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Arginase PF00491.21 gi|302348373|ref|YP_003816011.1| - 1.3e-48 165.9 0.0 1.7e-48 165.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family AA_permease_2 PF13520.6 gi|302348374|ref|YP_003816012.1| - 1.8e-23 83.1 55.6 2.3e-23 82.7 55.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|302348374|ref|YP_003816012.1| - 3.8e-16 58.7 46.1 7.2e-16 57.8 46.1 1.4 1 1 0 1 1 1 1 Amino acid permease Phage_holin_3_6 PF07332.11 gi|302348374|ref|YP_003816012.1| - 0.0021 18.1 0.8 0.0021 18.1 0.8 5.6 3 2 2 5 5 5 1 Putative Actinobacterial Holin-X, holin superfamily III Urocanase_C PF17392.2 gi|302348375|ref|YP_003816013.1| - 2e-82 275.4 0.0 3.9e-82 274.5 0.0 1.5 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|302348375|ref|YP_003816013.1| - 8.4e-79 264.1 0.1 1.2e-78 263.6 0.1 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|302348375|ref|YP_003816013.1| - 1.8e-45 153.8 0.0 3e-45 153.0 0.0 1.4 1 0 0 1 1 1 1 Urocanase N-terminal domain DUF370 PF04025.12 gi|302348375|ref|YP_003816013.1| - 0.51 10.5 1.3 1.3 9.2 0.1 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF370) MMPL PF03176.15 gi|302348376|ref|YP_003816014.1| - 6.6e-64 215.9 39.9 1.6e-35 122.6 16.0 2.4 2 0 0 2 2 2 2 MMPL family ACR_tran PF00873.19 gi|302348376|ref|YP_003816014.1| - 4.3e-05 21.4 7.6 4.3e-05 21.4 7.6 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family CnrY PF17524.2 gi|302348376|ref|YP_003816014.1| - 0.16 12.2 0.1 0.16 12.2 0.1 3.7 4 0 0 4 4 4 0 Anti-sigma factor CnrY YHS PF04945.13 gi|302348377|ref|YP_003816015.1| - 4.8e-21 74.6 1.2 5.8e-21 74.3 1.2 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|302348377|ref|YP_003816015.1| - 3.4e-05 24.1 0.9 4.4e-05 23.7 0.9 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|302348377|ref|YP_003816015.1| - 3.9e-05 23.5 1.1 5e-05 23.2 1.1 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif ATPase-cat_bd PF12156.8 gi|302348377|ref|YP_003816015.1| - 0.004 17.9 0.0 0.0045 17.7 0.0 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase FAP206 PF12018.8 gi|302348377|ref|YP_003816015.1| - 0.0044 16.6 0.0 0.0049 16.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function E1-E2_ATPase PF00122.20 gi|302348378|ref|YP_003816016.1| - 8.1e-55 185.1 1.2 1.7e-54 184.1 1.2 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|302348378|ref|YP_003816016.1| - 1.7e-43 149.3 0.3 4e-43 148.1 0.3 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|302348378|ref|YP_003816016.1| - 1.6e-23 82.9 0.8 3.6e-14 53.0 0.5 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.7 gi|302348378|ref|YP_003816016.1| - 3.1e-05 24.4 2.1 0.0015 18.9 0.1 3.8 3 2 0 3 3 3 1 haloacid dehalogenase-like hydrolase PALP PF00291.25 gi|302348378|ref|YP_003816016.1| - 0.0047 16.4 3.0 0.0048 16.4 0.6 2.2 2 1 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme Hydrolase_3 PF08282.12 gi|302348378|ref|YP_003816016.1| - 0.0094 15.7 0.1 4.1 7.1 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Glyco_transf_4 PF13439.6 gi|302348378|ref|YP_003816016.1| - 0.16 12.0 3.5 8.4 6.4 0.0 4.0 4 1 0 4 4 4 0 Glycosyltransferase Family 4 Aminotran_5 PF00266.19 gi|302348379|ref|YP_003816017.1| - 7e-36 123.9 0.0 9.5e-36 123.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|302348379|ref|YP_003816017.1| - 1.2e-08 34.5 0.0 4e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|302348379|ref|YP_003816017.1| - 5.4e-08 32.5 0.1 1.7e-07 30.9 0.1 1.7 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|302348379|ref|YP_003816017.1| - 6.2e-05 21.7 0.0 0.00012 20.8 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.19 gi|302348379|ref|YP_003816017.1| - 0.0014 17.3 0.0 0.002 16.8 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Pyridoxal_deC PF00282.19 gi|302348379|ref|YP_003816017.1| - 0.0028 16.5 0.0 0.005 15.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain TPR_2 PF07719.17 gi|302348380|ref|YP_003816018.1| - 0.00044 20.1 4.1 0.0012 18.8 1.5 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_3 PF07720.12 gi|302348380|ref|YP_003816018.1| - 0.088 12.8 0.2 0.31 11.1 0.2 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|302348380|ref|YP_003816018.1| - 0.1 12.5 6.3 0.04 13.7 2.7 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|302348380|ref|YP_003816018.1| - 0.21 11.8 2.4 0.29 11.4 0.2 2.2 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 AhpC-TSA PF00578.21 gi|302348381|ref|YP_003816019.1| - 1e-38 132.0 0.0 1.2e-38 131.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|302348381|ref|YP_003816019.1| - 6.5e-26 90.8 0.0 7.2e-26 90.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|302348381|ref|YP_003816019.1| - 4e-05 23.7 0.0 5.3e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|302348381|ref|YP_003816019.1| - 0.00016 21.3 0.0 0.00021 20.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Thioredoxin_8 PF13905.6 gi|302348381|ref|YP_003816019.1| - 0.00024 21.4 0.0 0.00033 20.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like SCO1-SenC PF02630.14 gi|302348381|ref|YP_003816019.1| - 0.0014 18.6 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 SCO1/SenC DUF4473 PF14747.6 gi|302348381|ref|YP_003816019.1| - 0.04 14.5 0.0 0.079 13.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4473) GSHPx PF00255.19 gi|302348381|ref|YP_003816019.1| - 0.1 12.2 0.0 0.23 11.0 0.0 1.6 1 1 0 1 1 1 0 Glutathione peroxidase Acyl-CoA_dh_1 PF00441.24 gi|302348382|ref|YP_003816020.1| - 2.6e-47 160.8 3.3 5e-47 159.9 3.3 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|302348382|ref|YP_003816020.1| - 4.3e-33 114.3 0.2 3.6e-32 111.4 0.0 2.5 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|302348382|ref|YP_003816020.1| - 4.9e-25 87.6 0.0 9e-25 86.7 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|302348382|ref|YP_003816020.1| - 2.4e-20 73.2 1.1 2.4e-20 73.2 1.1 2.1 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain MazE_antitoxin PF04014.18 gi|302348383|ref|YP_003816021.1| - 2.1e-07 30.7 0.0 4.4e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Cyclase PF04199.13 gi|302348383|ref|YP_003816021.1| - 0.18 12.1 0.0 0.38 11.0 0.0 1.6 1 0 0 1 1 1 0 Putative cyclase AhpC-TSA PF00578.21 gi|302348384|ref|YP_003816022.1| - 2.2e-27 95.4 0.0 3.2e-27 94.9 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|302348384|ref|YP_003816022.1| - 1.6e-11 44.2 0.0 2.1e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|302348384|ref|YP_003816022.1| - 4.3e-06 26.5 0.0 8.8e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Ribosom_S30AE_C PF16321.5 gi|302348384|ref|YP_003816022.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 Sigma 54 modulation/S30EA ribosomal protein C terminus Radical_SAM PF04055.21 gi|302348385|ref|YP_003816023.1| - 1.2e-11 45.3 0.0 2.4e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|302348385|ref|YP_003816023.1| - 5.5e-07 29.7 0.0 1e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|302348385|ref|YP_003816023.1| - 0.00014 22.2 0.0 0.00023 21.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF364 PF04016.12 gi|302348386|ref|YP_003816024.1| - 2.8e-33 114.6 0.1 3.9e-33 114.1 0.1 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|302348386|ref|YP_003816024.1| - 2.6e-15 56.4 0.0 5.4e-15 55.4 0.0 1.5 1 0 0 1 1 1 1 Putative heavy-metal chelation Ham1p_like PF01725.16 gi|302348388|ref|YP_003816026.1| - 1.8e-48 164.9 0.0 2e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 Ham1 family APH PF01636.23 gi|302348389|ref|YP_003816027.1| - 1.5e-08 34.9 0.3 1.7e-05 24.8 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.22 gi|302348389|ref|YP_003816027.1| - 5.3e-08 32.7 0.0 8.2e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|302348389|ref|YP_003816027.1| - 6.7e-06 25.7 0.0 1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|302348389|ref|YP_003816027.1| - 0.0041 16.5 0.0 0.012 14.9 0.0 1.7 1 1 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 gi|302348389|ref|YP_003816027.1| - 0.021 14.4 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.14 gi|302348389|ref|YP_003816027.1| - 0.05 13.0 0.0 0.47 9.8 0.0 2.0 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family Peptidase_M22 PF00814.25 gi|302348390|ref|YP_003816028.1| - 2.7e-71 240.4 0.1 3.2e-71 240.2 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family CheX PF13690.6 gi|302348390|ref|YP_003816028.1| - 0.014 15.5 0.0 0.031 14.4 0.0 1.5 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX Carbam_trans_N PF02543.15 gi|302348390|ref|YP_003816028.1| - 0.023 14.3 0.1 0.044 13.4 0.1 1.4 1 0 0 1 1 1 0 Carbamoyltransferase N-terminus AnmK PF03702.14 gi|302348390|ref|YP_003816028.1| - 0.031 13.4 0.0 0.23 10.5 0.0 2.0 2 0 0 2 2 2 0 Anhydro-N-acetylmuramic acid kinase Ribosomal_S27 PF01599.19 gi|302348391|ref|YP_003816029.1| - 4.9e-12 45.8 3.1 6e-12 45.5 3.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.7 gi|302348391|ref|YP_003816029.1| - 0.00015 21.6 1.1 0.00017 21.5 1.1 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|302348391|ref|YP_003816029.1| - 0.001 18.9 1.0 0.0014 18.5 1.0 1.2 1 0 0 1 1 1 1 SprT-like zinc ribbon domain zf-piccolo PF05715.13 gi|302348391|ref|YP_003816029.1| - 0.0082 16.3 0.4 0.0089 16.2 0.4 1.1 1 0 0 1 1 1 1 Piccolo Zn-finger RNA_POL_M_15KD PF02150.16 gi|302348391|ref|YP_003816029.1| - 0.0091 15.8 2.6 0.0094 15.8 1.0 1.9 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|302348391|ref|YP_003816029.1| - 0.012 14.9 6.0 0.089 12.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain NRDD PF13597.6 gi|302348391|ref|YP_003816029.1| - 0.016 14.0 1.1 0.017 13.9 1.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase PriA_CRR PF18319.1 gi|302348391|ref|YP_003816029.1| - 0.029 14.4 3.8 0.077 13.0 3.8 1.7 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain OrfB_Zn_ribbon PF07282.11 gi|302348391|ref|YP_003816029.1| - 0.033 14.1 0.3 0.036 14.0 0.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|302348391|ref|YP_003816029.1| - 0.034 13.9 2.4 2.4 8.0 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Ribosomal_L37ae PF01780.19 gi|302348391|ref|YP_003816029.1| - 0.035 14.2 0.6 0.047 13.8 0.6 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family MRNIP PF15749.5 gi|302348391|ref|YP_003816029.1| - 0.088 13.5 1.2 0.12 13.1 1.2 1.3 1 0 0 1 1 1 0 MRN-interacting protein zf-ISL3 PF14690.6 gi|302348391|ref|YP_003816029.1| - 0.13 12.9 4.3 3.1 8.5 0.5 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RecR PF02132.15 gi|302348391|ref|YP_003816029.1| - 0.14 11.7 1.3 0.28 10.8 1.3 1.6 1 1 0 1 1 1 0 RecR protein zinc_ribbon_13 PF09855.9 gi|302348391|ref|YP_003816029.1| - 0.32 11.2 3.8 5.4 7.3 0.4 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_2 PF13240.6 gi|302348391|ref|YP_003816029.1| - 1.1 9.0 10.1 0.4 10.5 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S24e PF01282.19 gi|302348392|ref|YP_003816030.1| - 3.7e-24 84.5 1.3 5.8e-24 83.8 1.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S24e DUF436 PF04260.12 gi|302348392|ref|YP_003816030.1| - 0.013 15.1 0.1 0.017 14.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF436) N6_Mtase PF02384.16 gi|302348394|ref|YP_003816032.1| - 3.6e-08 33.0 0.0 6.4e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase MTS PF05175.14 gi|302348394|ref|YP_003816032.1| - 0.00012 21.6 0.0 0.00044 19.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain N6_N4_Mtase PF01555.18 gi|302348394|ref|YP_003816032.1| - 0.00064 19.5 0.0 0.0036 17.0 0.0 2.1 2 1 0 3 3 3 1 DNA methylase Methyltransf_25 PF13649.6 gi|302348394|ref|YP_003816032.1| - 0.014 16.1 0.0 0.039 14.7 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|302348394|ref|YP_003816032.1| - 0.015 15.0 0.0 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 TaqI_C PF12950.7 gi|302348394|ref|YP_003816032.1| - 0.026 14.6 0.1 0.053 13.6 0.1 1.5 1 0 0 1 1 1 0 TaqI-like C-terminal specificity domain Met_10 PF02475.16 gi|302348394|ref|YP_003816032.1| - 0.06 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|302348394|ref|YP_003816032.1| - 0.15 12.8 0.0 0.48 11.1 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain HTH_20 PF12840.7 gi|302348395|ref|YP_003816033.1| - 0.00031 20.7 0.1 0.00048 20.1 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|302348395|ref|YP_003816033.1| - 0.0045 16.5 0.1 0.008 15.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|302348395|ref|YP_003816033.1| - 0.0055 16.6 0.0 0.0097 15.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|302348395|ref|YP_003816033.1| - 0.0079 16.0 0.1 0.012 15.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|302348395|ref|YP_003816033.1| - 0.015 15.2 0.1 0.025 14.5 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|302348395|ref|YP_003816033.1| - 0.097 12.7 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|302348395|ref|YP_003816033.1| - 0.17 11.8 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 MarR family Amidohydro_2 PF04909.14 gi|302348396|ref|YP_003816034.1| - 1.4e-21 77.6 0.0 2.2e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase AMP-binding PF00501.28 gi|302348397|ref|YP_003816035.1| - 9e-95 317.7 0.0 1.1e-94 317.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|302348397|ref|YP_003816035.1| - 9.7e-28 97.0 0.2 1.9e-27 96.0 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|302348397|ref|YP_003816035.1| - 1.2e-19 69.9 1.4 3.1e-19 68.6 1.4 1.8 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Gpr1_Fun34_YaaH PF01184.19 gi|302348398|ref|YP_003816036.1| - 1.4e-28 100.0 23.6 1.7e-28 99.6 23.6 1.1 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family GNAT_acetyltran PF12746.7 gi|302348399|ref|YP_003816037.1| - 1.7e-06 27.8 0.0 1.9e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_1 PF00583.25 gi|302348399|ref|YP_003816037.1| - 3.6e-06 27.2 0.8 5.6e-06 26.6 0.8 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|302348399|ref|YP_003816037.1| - 5.7e-06 26.2 0.0 8.9e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|302348399|ref|YP_003816037.1| - 0.00012 22.7 0.0 0.00014 22.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|302348399|ref|YP_003816037.1| - 0.01 16.3 0.1 0.019 15.4 0.1 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|302348399|ref|YP_003816037.1| - 0.012 15.6 0.1 0.023 14.7 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Diphthami_syn_2 PF01902.17 gi|302348400|ref|YP_003816038.1| - 1.1e-25 90.5 0.0 1.3e-25 90.2 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase SBP_bac_8 PF13416.6 gi|302348401|ref|YP_003816039.1| - 2.7e-21 76.6 0.2 4.5e-21 75.9 0.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|302348401|ref|YP_003816039.1| - 1.7e-19 70.9 1.3 7e-19 68.9 1.3 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|302348401|ref|YP_003816039.1| - 0.0083 15.9 0.4 0.19 11.5 0.1 2.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Shisa PF13908.6 gi|302348401|ref|YP_003816039.1| - 0.45 10.7 3.8 0.81 9.9 3.8 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator FeoB_associated PF12669.7 gi|302348401|ref|YP_003816039.1| - 0.54 10.7 2.9 0.9 10.0 2.9 1.3 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein PsbN PF02468.15 gi|302348401|ref|YP_003816039.1| - 1.1 9.1 3.2 3.4 7.6 3.2 1.9 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) MFS_1 PF07690.16 gi|302348402|ref|YP_003816040.1| - 1.7e-45 155.5 45.2 1.7e-45 155.5 45.2 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|302348402|ref|YP_003816040.1| - 1.2e-07 31.0 5.1 1.2e-07 31.0 5.1 3.2 2 1 0 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|302348402|ref|YP_003816040.1| - 0.0018 16.9 17.5 0.0018 16.9 17.5 3.4 2 2 1 3 3 3 1 MFS/sugar transport protein OST3_OST6 PF04756.13 gi|302348402|ref|YP_003816040.1| - 2.4 7.4 3.7 3.6 6.9 0.8 2.1 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family PUCC PF03209.15 gi|302348402|ref|YP_003816040.1| - 4.8 6.1 30.7 0.067 12.2 14.9 2.8 2 2 0 2 2 2 0 PUCC protein Cor1 PF04803.12 gi|302348403|ref|YP_003816041.1| - 0.0015 18.8 0.4 0.0018 18.5 0.4 1.2 1 0 0 1 1 1 1 Cor1/Xlr/Xmr conserved region PLC-beta_C PF08703.10 gi|302348403|ref|YP_003816041.1| - 0.0043 17.1 1.0 0.0053 16.8 1.0 1.1 1 0 0 1 1 1 1 PLC-beta C terminal Apolipoprotein PF01442.18 gi|302348403|ref|YP_003816041.1| - 0.0048 16.8 1.5 0.0057 16.6 1.5 1.0 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain BRX_N PF13713.6 gi|302348403|ref|YP_003816041.1| - 0.017 14.8 0.2 0.25 11.1 0.0 2.3 2 0 0 2 2 2 0 Transcription factor BRX N-terminal domain DUF883 PF05957.13 gi|302348403|ref|YP_003816041.1| - 0.023 15.3 1.4 0.026 15.1 1.4 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) K-box PF01486.17 gi|302348403|ref|YP_003816041.1| - 0.025 14.7 1.4 0.029 14.6 1.4 1.2 1 0 0 1 1 1 0 K-box region PV-1 PF06637.11 gi|302348403|ref|YP_003816041.1| - 0.033 13.0 0.6 0.035 13.0 0.6 1.0 1 0 0 1 1 1 0 PV-1 protein (PLVAP) ZapA PF05164.13 gi|302348403|ref|YP_003816041.1| - 0.08 13.4 1.7 0.78 10.2 0.7 2.0 1 1 1 2 2 2 0 Cell division protein ZapA GLYCAM-1 PF05242.11 gi|302348403|ref|YP_003816041.1| - 0.09 12.9 0.2 0.097 12.8 0.2 1.0 1 0 0 1 1 1 0 Glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1) DUF993 PF06187.11 gi|302348403|ref|YP_003816041.1| - 0.11 11.3 0.1 0.12 11.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF993) Sulf_transp PF04143.14 gi|302348404|ref|YP_003816042.1| - 2.4e-21 76.6 19.8 2.4e-21 76.6 19.8 2.0 1 1 1 2 2 2 1 Sulphur transport SdpI PF13630.6 gi|302348405|ref|YP_003816043.1| - 0.0058 16.7 2.1 0.0071 16.4 2.1 1.1 1 0 0 1 1 1 1 SdpI/YhfL protein family DUF4231 PF14015.6 gi|302348405|ref|YP_003816043.1| - 0.011 16.2 1.5 0.014 15.9 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF2929 PF11151.8 gi|302348405|ref|YP_003816043.1| - 0.013 15.7 3.7 1.1 9.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2929) DUF3177 PF11375.8 gi|302348405|ref|YP_003816043.1| - 0.015 15.1 1.6 0.016 15.0 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3177) Pox_A14 PF05767.12 gi|302348405|ref|YP_003816043.1| - 0.024 14.8 4.8 0.49 10.6 4.6 2.0 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 DUF4713 PF15831.5 gi|302348405|ref|YP_003816043.1| - 0.077 13.5 1.2 2.7 8.5 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4713) SLATT_fungal PF18142.1 gi|302348405|ref|YP_003816043.1| - 0.13 12.3 2.2 0.17 11.9 2.2 1.2 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain DUF2207 PF09972.9 gi|302348405|ref|YP_003816043.1| - 0.13 11.0 0.1 0.13 11.0 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) OppC_N PF12911.7 gi|302348405|ref|YP_003816043.1| - 0.32 11.0 3.4 0.67 10.0 0.1 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Phage_Gp23 PF10669.9 gi|302348405|ref|YP_003816043.1| - 0.58 10.5 2.5 1.8 8.9 0.2 2.0 2 0 0 2 2 2 0 Protein gp23 (Bacteriophage A118) Vpu PF00558.19 gi|302348405|ref|YP_003816043.1| - 1.5 8.7 3.8 18 5.2 0.5 2.1 2 0 0 2 2 2 0 Vpu protein BPD_transp_1 PF00528.22 gi|302348407|ref|YP_003816045.1| - 5e-16 59.0 46.6 8.6e-10 38.6 20.6 4.1 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component Caroten_synth PF04240.12 gi|302348408|ref|YP_003816046.1| - 1.8e-36 126.0 21.3 2.7e-36 125.4 21.3 1.2 1 0 0 1 1 1 1 Carotenoid biosynthesis protein Glyco_hydr_116N PF12215.8 gi|302348409|ref|YP_003816047.1| - 1.8e-49 168.9 0.0 2.4e-49 168.5 0.0 1.2 1 0 0 1 1 1 1 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term DUF608 PF04685.13 gi|302348409|ref|YP_003816047.1| - 2.5e-45 155.2 0.0 1e-33 117.0 0.0 3.5 3 1 0 3 3 3 2 Glycosyl-hydrolase family 116, catalytic region Glyco_hydro_52 PF03512.13 gi|302348409|ref|YP_003816047.1| - 0.0084 15.1 0.0 0.02 13.9 0.0 1.5 2 0 0 2 2 2 1 Glycosyl hydrolase family 52 DUF5127 PF17168.4 gi|302348409|ref|YP_003816047.1| - 0.036 13.8 0.0 6.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5127) POR PF01558.18 gi|302348410|ref|YP_003816048.1| - 1.9e-32 112.7 0.4 2.7e-32 112.3 0.4 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Gly_rich_SFCGS PF14272.6 gi|302348410|ref|YP_003816048.1| - 0.043 13.8 0.8 1.8 8.6 0.0 2.8 2 1 1 3 3 3 0 Glycine-rich SFCGS TPP_enzyme_C PF02775.21 gi|302348411|ref|YP_003816049.1| - 2e-23 82.9 0.2 4.2e-23 81.8 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|302348411|ref|YP_003816049.1| - 3.6e-17 62.9 0.1 3.6e-17 62.9 0.1 1.9 3 0 0 3 3 3 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|302348411|ref|YP_003816049.1| - 4.8e-11 42.0 13.5 2.9e-08 33.2 4.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|302348411|ref|YP_003816049.1| - 1.3e-09 37.7 12.9 6.6e-07 29.1 2.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|302348411|ref|YP_003816049.1| - 1.4e-07 31.1 18.0 9.3e-05 22.3 2.5 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|302348411|ref|YP_003816049.1| - 1.8e-07 31.0 4.5 0.0012 18.5 0.2 2.8 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_10 PF13237.6 gi|302348411|ref|YP_003816049.1| - 4.2e-06 26.8 11.0 0.00026 21.1 12.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|302348411|ref|YP_003816049.1| - 8.4e-06 25.8 10.0 1.6e-05 24.9 9.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|302348411|ref|YP_003816049.1| - 8.9e-06 25.8 9.4 2e-05 24.7 9.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain PFOR_II PF17147.4 gi|302348411|ref|YP_003816049.1| - 0.00012 22.3 0.2 0.00093 19.5 0.1 2.5 3 0 0 3 3 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Fer4_7 PF12838.7 gi|302348411|ref|YP_003816049.1| - 0.00015 22.3 12.6 0.0026 18.3 12.0 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|302348411|ref|YP_003816049.1| - 0.00025 21.9 6.3 0.0028 18.6 1.0 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|302348411|ref|YP_003816049.1| - 0.00037 20.8 11.6 0.016 15.6 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|302348411|ref|YP_003816049.1| - 0.0025 18.3 15.8 0.039 14.5 2.9 2.9 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Transketolase_C PF02780.20 gi|302348411|ref|YP_003816049.1| - 0.0083 16.0 0.1 0.026 14.4 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4_15 PF13459.6 gi|302348411|ref|YP_003816049.1| - 0.054 14.2 15.1 0.13 13.0 1.5 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|302348411|ref|YP_003816049.1| - 0.16 12.5 11.8 1.6 9.3 2.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|302348411|ref|YP_003816049.1| - 1.4 9.5 12.6 0.55 10.8 2.3 2.5 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|302348411|ref|YP_003816049.1| - 3.7 8.5 10.3 2.1 9.2 1.9 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Glycos_transf_2 PF00535.26 gi|302348412|ref|YP_003816050.1| - 8.2e-10 38.8 0.0 1.9e-09 37.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|302348412|ref|YP_003816050.1| - 0.0025 18.3 0.0 0.0059 17.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF5010 PF16402.5 gi|302348412|ref|YP_003816050.1| - 0.022 13.6 0.0 0.032 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) Glyco_tranf_2_3 PF13641.6 gi|302348412|ref|YP_003816050.1| - 0.066 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase like family 2 CRM1_repeat_2 PF18784.1 gi|302348413|ref|YP_003816051.1| - 0.083 12.5 0.6 3.6 7.3 0.0 2.5 1 1 1 2 2 2 0 CRM1 / Exportin repeat 2 Fer2_4 PF13510.6 gi|302348414|ref|YP_003816052.1| - 6.5e-20 71.0 0.1 1.9e-19 69.5 0.1 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Molybdopterin PF00384.22 gi|302348414|ref|YP_003816052.1| - 1.6e-16 60.3 0.0 2.5e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fer4 PF00037.27 gi|302348414|ref|YP_003816052.1| - 1.5e-09 37.2 17.9 3.6e-06 26.6 2.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer2 PF00111.27 gi|302348414|ref|YP_003816052.1| - 7.5e-09 35.4 0.3 7.5e-09 35.4 0.3 2.4 2 1 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_10 PF13237.6 gi|302348414|ref|YP_003816052.1| - 9.6e-07 28.8 12.7 1.7e-06 28.0 6.4 2.6 1 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|302348414|ref|YP_003816052.1| - 2.7e-06 27.5 14.1 3.6e-05 23.9 9.5 2.8 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|302348414|ref|YP_003816052.1| - 5e-06 26.6 11.2 4e-05 23.6 4.4 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Molybdop_Fe4S4 PF04879.16 gi|302348414|ref|YP_003816052.1| - 5.4e-06 26.3 0.1 1.6e-05 24.8 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_8 PF13183.6 gi|302348414|ref|YP_003816052.1| - 6.8e-06 26.4 12.7 0.0027 18.1 8.9 3.4 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|302348414|ref|YP_003816052.1| - 1.6e-05 25.4 17.5 9.3e-05 22.9 12.0 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|302348414|ref|YP_003816052.1| - 2.8e-05 24.0 25.2 0.00014 21.8 3.8 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|302348414|ref|YP_003816052.1| - 6.3e-05 23.4 4.3 6.3e-05 23.4 4.3 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|302348414|ref|YP_003816052.1| - 0.0007 20.5 1.8 0.0007 20.5 1.8 3.4 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|302348414|ref|YP_003816052.1| - 0.0012 18.8 3.1 0.0012 18.8 3.1 3.9 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|302348414|ref|YP_003816052.1| - 0.014 16.3 5.2 0.014 16.3 5.2 3.8 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|302348414|ref|YP_003816052.1| - 0.018 15.5 4.4 0.018 15.5 4.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Oxidored_nitro PF00148.19 gi|302348414|ref|YP_003816052.1| - 0.13 10.9 0.0 0.26 9.9 0.0 1.5 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Fer4_18 PF13746.6 gi|302348414|ref|YP_003816052.1| - 2.1 8.6 17.4 3.9 7.7 7.4 3.0 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|302348414|ref|YP_003816052.1| - 2.3 9.0 11.9 2.2 9.1 1.2 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|302348414|ref|YP_003816052.1| - 6.3 7.7 9.2 6.1 7.8 0.5 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Complex1_51K PF01512.17 gi|302348415|ref|YP_003816053.1| - 1.9e-45 154.5 0.0 2.7e-45 154.0 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|302348415|ref|YP_003816053.1| - 1.8e-16 59.9 0.5 2.9e-16 59.3 0.5 1.3 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 gi|302348415|ref|YP_003816053.1| - 0.0014 18.5 0.1 0.0071 16.2 0.1 2.2 2 0 0 2 2 2 1 SLBB domain Aminotran_1_2 PF00155.21 gi|302348416|ref|YP_003816054.1| - 2.1e-52 178.5 0.0 2.4e-52 178.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|302348416|ref|YP_003816054.1| - 1e-10 41.5 0.0 1.5e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|302348416|ref|YP_003816054.1| - 1.3e-08 33.8 0.0 1.8e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|302348416|ref|YP_003816054.1| - 9.9e-05 21.4 0.0 0.00015 20.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|302348416|ref|YP_003816054.1| - 0.0019 17.5 0.0 0.0029 16.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyr_redox PF00070.27 gi|302348416|ref|YP_003816054.1| - 0.1 13.2 0.0 0.28 11.8 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF3228 PF11539.8 gi|302348416|ref|YP_003816054.1| - 0.2 11.2 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3228) Voltage_CLC PF00654.20 gi|302348417|ref|YP_003816055.1| - 1.4e-69 235.0 30.0 1.4e-69 235.0 30.0 1.9 1 1 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.28 gi|302348417|ref|YP_003816055.1| - 1.2e-18 67.2 0.2 1.3e-11 44.7 0.0 2.5 2 0 0 2 2 2 2 CBS domain ThiI PF02568.14 gi|302348418|ref|YP_003816056.1| - 6.3e-49 166.3 0.0 8.2e-49 165.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|302348418|ref|YP_003816056.1| - 2.8e-17 63.2 0.1 1.1e-16 61.3 0.0 1.9 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|302348418|ref|YP_003816056.1| - 0.00047 19.7 0.0 0.16 11.4 0.0 2.7 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|302348418|ref|YP_003816056.1| - 0.036 13.6 0.1 0.18 11.3 0.0 2.1 1 1 1 2 2 2 0 Diphthamide synthase ATP_bind_3 PF01171.20 gi|302348418|ref|YP_003816056.1| - 0.053 13.3 0.0 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 PP-loop family Thioredoxin_2 PF13098.6 gi|302348419|ref|YP_003816057.1| - 2.2e-06 28.1 0.0 3.7e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 gi|302348419|ref|YP_003816057.1| - 0.00018 21.6 0.0 0.00033 20.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|302348419|ref|YP_003816057.1| - 0.0008 19.4 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredox_DsbH PF03190.15 gi|302348419|ref|YP_003816057.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF255 DUF1129 PF06570.11 gi|302348419|ref|YP_003816057.1| - 0.2 11.1 3.1 0.25 10.8 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Auto_anti-p27 PF06677.12 gi|302348420|ref|YP_003816058.1| - 5.4e-13 48.9 1.2 8.3e-13 48.3 1.2 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|302348420|ref|YP_003816058.1| - 0.056 12.9 1.6 0.21 11.1 1.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain EamA PF00892.20 gi|302348422|ref|YP_003816060.1| - 5.8e-26 91.3 30.8 1.8e-17 63.8 8.4 2.8 2 1 0 2 2 2 2 EamA-like transporter family TIP49 PF06068.13 gi|302348423|ref|YP_003816061.1| - 3.9e-131 437.4 0.2 5e-131 437.1 0.2 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|302348423|ref|YP_003816061.1| - 3e-24 84.9 0.4 6.4e-24 83.9 0.4 1.6 1 0 0 1 1 1 1 TIP49 AAA-lid domain AAA PF00004.29 gi|302348423|ref|YP_003816061.1| - 8.9e-10 39.1 3.5 3.4e-07 30.8 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|302348423|ref|YP_003816061.1| - 1e-06 28.6 1.1 0.00022 21.0 0.1 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|302348423|ref|YP_003816061.1| - 2.5e-06 28.0 2.6 4.9e-05 23.8 0.1 2.6 3 0 0 3 3 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|302348423|ref|YP_003816061.1| - 5.8e-06 26.6 0.1 0.04 14.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|302348423|ref|YP_003816061.1| - 1.3e-05 24.8 0.1 0.00015 21.3 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|302348423|ref|YP_003816061.1| - 7.1e-05 22.6 0.7 0.00034 20.4 0.1 2.4 3 0 0 3 3 2 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|302348423|ref|YP_003816061.1| - 0.0018 18.3 0.1 0.011 15.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|302348423|ref|YP_003816061.1| - 0.002 18.3 0.0 0.049 13.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|302348423|ref|YP_003816061.1| - 0.002 17.9 0.1 0.0039 16.9 0.1 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein PhoH PF02562.16 gi|302348423|ref|YP_003816061.1| - 0.0028 17.1 0.2 0.0059 16.1 0.2 1.5 1 0 0 1 1 1 1 PhoH-like protein ABC_tran PF00005.27 gi|302348423|ref|YP_003816061.1| - 0.0073 16.8 0.0 0.024 15.1 0.0 2.1 1 1 0 1 1 1 1 ABC transporter AAA_25 PF13481.6 gi|302348423|ref|YP_003816061.1| - 0.01 15.5 0.2 0.01 15.5 0.2 2.4 2 1 1 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|302348423|ref|YP_003816061.1| - 0.015 15.6 1.1 0.12 12.7 1.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|302348423|ref|YP_003816061.1| - 0.023 15.0 0.1 0.084 13.1 0.1 2.0 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|302348423|ref|YP_003816061.1| - 0.028 13.8 0.6 0.057 12.8 0.2 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|302348423|ref|YP_003816061.1| - 0.028 13.8 0.1 0.087 12.2 0.1 1.8 1 0 0 1 1 1 0 KaiC ResIII PF04851.15 gi|302348423|ref|YP_003816061.1| - 0.036 14.1 0.0 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IPT PF01745.16 gi|302348423|ref|YP_003816061.1| - 0.037 13.4 0.3 0.072 12.5 0.1 1.6 2 0 0 2 2 1 0 Isopentenyl transferase AAA_32 PF13654.6 gi|302348423|ref|YP_003816061.1| - 0.04 12.7 0.9 1.5 7.5 0.1 2.8 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|302348423|ref|YP_003816061.1| - 0.042 14.4 0.0 0.11 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|302348423|ref|YP_003816061.1| - 0.046 13.0 0.0 0.081 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|302348423|ref|YP_003816061.1| - 0.047 13.4 2.0 0.22 11.2 0.1 2.5 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|302348423|ref|YP_003816061.1| - 0.059 12.6 0.0 0.15 11.3 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|302348423|ref|YP_003816061.1| - 0.071 13.2 0.0 0.43 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|302348423|ref|YP_003816061.1| - 0.075 13.4 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase CbiA PF01656.23 gi|302348423|ref|YP_003816061.1| - 0.078 13.0 0.0 0.65 10.1 0.0 2.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_2 PF07724.14 gi|302348423|ref|YP_003816061.1| - 0.085 13.0 0.1 0.21 11.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_23 PF13476.6 gi|302348423|ref|YP_003816061.1| - 0.098 13.1 1.3 0.16 12.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|302348423|ref|YP_003816061.1| - 0.15 11.9 0.1 0.3 10.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MEDS PF14417.6 gi|302348424|ref|YP_003816062.1| - 0.076 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain OFeT_1 PF16955.5 gi|302348425|ref|YP_003816063.1| - 4.5e-45 153.9 14.2 5.5e-45 153.6 14.2 1.0 1 0 0 1 1 1 1 Ferrous iron uptake permease, iron-lead transporter Creatininase PF02633.14 gi|302348427|ref|YP_003816065.1| - 1.9e-58 197.8 0.0 2.4e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase PsiE PF06146.12 gi|302348428|ref|YP_003816066.1| - 2.5e-06 27.8 8.1 2.5e-06 27.8 8.1 2.2 2 0 0 2 2 2 1 Phosphate-starvation-inducible E LMF1 PF06762.14 gi|302348428|ref|YP_003816066.1| - 1.9 7.5 4.5 2.2 7.3 4.5 1.0 1 0 0 1 1 1 0 Lipase maturation factor ADH_zinc_N PF00107.26 gi|302348430|ref|YP_003816068.1| - 2.7e-34 117.9 0.6 4.2e-34 117.3 0.6 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|302348430|ref|YP_003816068.1| - 6.7e-26 90.3 0.1 1.3e-25 89.4 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|302348430|ref|YP_003816068.1| - 1.3e-16 61.9 0.1 3.3e-16 60.6 0.1 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.6 gi|302348430|ref|YP_003816068.1| - 0.00018 21.5 2.0 0.00026 20.9 2.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|302348430|ref|YP_003816068.1| - 0.00042 20.0 0.5 0.00055 19.6 0.5 1.2 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|302348430|ref|YP_003816068.1| - 0.00071 19.0 0.1 0.0011 18.3 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|302348430|ref|YP_003816068.1| - 0.0032 16.9 0.6 0.0047 16.4 0.6 1.3 1 0 0 1 1 1 1 short chain dehydrogenase DapB_N PF01113.20 gi|302348430|ref|YP_003816068.1| - 0.0037 17.4 0.9 0.0061 16.7 0.9 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.18 gi|302348430|ref|YP_003816068.1| - 0.0054 17.0 0.1 0.011 16.0 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|302348430|ref|YP_003816068.1| - 0.0062 15.9 1.6 0.01 15.2 1.6 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain CMAS PF02353.20 gi|302348430|ref|YP_003816068.1| - 0.028 13.7 0.1 0.038 13.3 0.1 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Epimerase PF01370.21 gi|302348430|ref|YP_003816068.1| - 0.047 13.1 0.2 0.067 12.6 0.2 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DXP_reductoisom PF02670.16 gi|302348430|ref|YP_003816068.1| - 0.27 11.9 3.2 2.6 8.8 1.7 2.2 1 1 1 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Acetyltransf_1 PF00583.25 gi|302348431|ref|YP_003816069.1| - 4.5e-22 78.5 0.2 5.9e-22 78.1 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|302348431|ref|YP_003816069.1| - 5.6e-16 58.6 0.0 6.6e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|302348431|ref|YP_003816069.1| - 7.3e-14 52.0 0.2 1e-13 51.5 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|302348431|ref|YP_003816069.1| - 3.4e-09 36.9 0.1 8.2e-08 32.4 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|302348431|ref|YP_003816069.1| - 3.5e-08 33.3 0.0 4.9e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|302348431|ref|YP_003816069.1| - 0.0014 19.3 0.0 0.0021 18.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|302348431|ref|YP_003816069.1| - 0.0023 17.6 0.0 0.0033 17.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_6 PF13480.7 gi|302348431|ref|YP_003816069.1| - 0.0024 18.0 0.4 0.0033 17.6 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|302348431|ref|YP_003816069.1| - 0.0083 16.2 0.1 0.012 15.7 0.1 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|302348431|ref|YP_003816069.1| - 0.017 15.3 0.0 0.023 14.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|302348431|ref|YP_003816069.1| - 0.054 13.2 0.0 0.12 12.1 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UbiA PF01040.18 gi|302348432|ref|YP_003816070.1| - 4.4e-18 65.5 23.9 4.4e-18 65.5 23.9 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family Hydantoinase_A PF01968.18 gi|302348433|ref|YP_003816071.1| - 5.9e-93 311.3 7.0 2.3e-91 306.1 3.4 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|302348433|ref|YP_003816071.1| - 6.7e-47 159.5 0.0 1.3e-46 158.6 0.0 1.5 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|302348433|ref|YP_003816071.1| - 0.0052 15.4 3.6 0.68 8.5 0.3 2.6 2 1 0 2 2 2 2 MutL protein DUF11 PF01345.18 gi|302348433|ref|YP_003816071.1| - 0.1 12.9 0.0 0.3 11.4 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF11 Hydantoinase_B PF02538.14 gi|302348434|ref|YP_003816072.1| - 2.3e-182 607.0 2.5 2.6e-182 606.9 2.5 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase DUF883 PF05957.13 gi|302348435|ref|YP_003816073.1| - 0.032 14.8 2.8 0.22 12.1 1.5 2.7 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) Spc7 PF08317.11 gi|302348435|ref|YP_003816073.1| - 0.072 12.0 0.1 0.099 11.5 0.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Gp58 PF07902.11 gi|302348435|ref|YP_003816073.1| - 0.99 7.6 4.1 1.8 6.8 4.1 1.4 1 0 0 1 1 1 0 gp58-like protein Baculo_PEP_C PF04513.12 gi|302348435|ref|YP_003816073.1| - 1 9.4 5.7 29 4.7 0.1 2.6 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Glycos_transf_2 PF00535.26 gi|302348436|ref|YP_003816074.1| - 1.4e-15 57.6 0.1 2e-15 57.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302348436|ref|YP_003816074.1| - 2.4e-06 27.6 0.0 7.2e-06 26.0 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|302348436|ref|YP_003816074.1| - 0.1 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Raffinose_syn PF05691.12 gi|302348438|ref|YP_003816076.1| - 7.8e-41 139.7 0.0 8.8e-27 93.2 0.0 2.4 3 0 0 3 3 3 2 Raffinose synthase or seed imbibition protein Sip1 Melibiase PF02065.18 gi|302348438|ref|YP_003816076.1| - 7.5e-05 21.8 0.0 0.00015 20.8 0.0 1.4 1 0 0 1 1 1 1 Melibiase Melibiase_2 PF16499.5 gi|302348438|ref|YP_003816076.1| - 0.0014 17.9 0.0 0.0036 16.5 0.0 1.6 1 1 0 1 1 1 1 Alpha galactosidase A Thermopsin PF05317.11 gi|302348440|ref|YP_003816078.1| - 2.7e-29 102.5 29.3 5.8e-19 68.6 13.8 2.9 1 1 1 2 2 2 2 Thermopsin AAA_14 PF13173.6 gi|302348441|ref|YP_003816079.1| - 2.4e-09 37.3 0.0 6.4e-05 23.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|302348441|ref|YP_003816079.1| - 8.2e-08 32.4 0.0 1.6e-07 31.5 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|302348441|ref|YP_003816079.1| - 1.9e-05 25.0 0.0 6.8e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|302348441|ref|YP_003816079.1| - 0.16 12.4 0.0 0.55 10.7 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SBP_bac_1 PF01547.25 gi|302348442|ref|YP_003816080.1| - 3.5e-11 43.6 5.2 5e-11 43.1 5.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|302348442|ref|YP_003816080.1| - 2.6e-08 34.0 4.9 4.6e-08 33.2 4.9 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Mucin PF01456.17 gi|302348442|ref|YP_003816080.1| - 0.19 11.7 15.3 0.33 10.9 15.3 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF4330 PF14221.6 gi|302348442|ref|YP_003816080.1| - 2.4 8.3 6.1 3.9 7.7 4.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) DUF3038 PF11237.8 gi|302348444|ref|YP_003816082.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) HIF-1a_CTAD PF08778.10 gi|302348445|ref|YP_003816083.1| - 0.023 14.3 0.0 0.047 13.3 0.0 1.5 1 0 0 1 1 1 0 HIF-1 alpha C terminal transactivation domain Propep_M14 PF02244.16 gi|302348445|ref|YP_003816083.1| - 0.056 13.8 0.0 0.18 12.2 0.0 1.9 1 1 0 1 1 1 0 Carboxypeptidase activation peptide COX1 PF00115.20 gi|302348446|ref|YP_003816084.1| - 3.9e-33 115.0 55.3 3.9e-33 115.0 55.3 2.1 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF488 PF04343.13 gi|302348447|ref|YP_003816085.1| - 2.4e-27 95.9 1.1 2.7e-27 95.8 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 RIFIN PF02009.16 gi|302348448|ref|YP_003816086.1| - 0.015 15.2 4.5 0.022 14.7 4.5 1.2 1 0 0 1 1 1 0 Rifin GST_C_3 PF14497.6 gi|302348448|ref|YP_003816086.1| - 0.55 10.4 2.7 5.9 7.1 0.1 3.7 4 0 0 4 4 4 0 Glutathione S-transferase, C-terminal domain SOG2 PF10428.9 gi|302348448|ref|YP_003816086.1| - 1.2 8.3 18.7 1.6 7.8 18.7 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein DUF1180 PF06679.12 gi|302348448|ref|YP_003816086.1| - 3 8.3 16.9 5.3 7.4 16.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Stevor PF17410.2 gi|302348448|ref|YP_003816086.1| - 4.7 6.7 7.9 7.1 6.1 7.9 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame GREB1 PF15782.5 gi|302348448|ref|YP_003816086.1| - 5 4.1 5.3 6.8 3.7 5.3 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer Sulfatase PF00884.23 gi|302348450|ref|YP_003816088.1| - 7.8e-24 84.6 0.0 1.7e-23 83.5 0.0 1.6 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|302348450|ref|YP_003816088.1| - 0.00095 18.8 0.1 0.49 9.9 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Tox-PL-2 PF15643.6 gi|302348450|ref|YP_003816088.1| - 0.082 13.0 0.1 0.94 9.6 0.0 2.4 2 1 1 3 3 3 0 Papain fold toxin 2 DUF229 PF02995.17 gi|302348450|ref|YP_003816088.1| - 0.23 10.0 0.0 0.32 9.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Peptidase_A4 PF01828.17 gi|302348451|ref|YP_003816089.1| - 2.1e-31 109.0 4.7 2.6e-31 108.8 4.7 1.1 1 0 0 1 1 1 1 Peptidase A4 family MASE2 PF05230.11 gi|302348453|ref|YP_003816091.1| - 0.058 13.5 0.0 0.067 13.3 0.0 1.1 1 0 0 1 1 1 0 MASE2 domain Methyltransf_21 PF05050.12 gi|302348454|ref|YP_003816092.1| - 4.5e-14 52.8 0.0 5.4e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain PrmA PF06325.13 gi|302348454|ref|YP_003816092.1| - 1.6e-05 24.4 0.0 2.2e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|302348454|ref|YP_003816092.1| - 0.00014 22.5 0.0 0.00024 21.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|302348454|ref|YP_003816092.1| - 0.00042 20.1 0.0 0.00062 19.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|302348454|ref|YP_003816092.1| - 0.00042 19.9 0.0 0.0005 19.7 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|302348454|ref|YP_003816092.1| - 0.0014 18.3 0.0 0.0019 17.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|302348454|ref|YP_003816092.1| - 0.0022 17.9 0.0 0.0029 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|302348454|ref|YP_003816092.1| - 0.017 15.1 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|302348454|ref|YP_003816092.1| - 0.018 14.8 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|302348454|ref|YP_003816092.1| - 0.025 14.1 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_22 PF13383.6 gi|302348454|ref|YP_003816092.1| - 0.038 13.6 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_21 PF05050.12 gi|302348455|ref|YP_003816093.1| - 0.0025 17.9 0.0 0.0028 17.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Polysacc_synt_3 PF13440.6 gi|302348456|ref|YP_003816094.1| - 1.4e-20 73.7 4.4 1.4e-20 73.7 4.4 1.9 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|302348456|ref|YP_003816094.1| - 0.00081 19.5 13.9 0.00081 19.5 13.9 3.3 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain DUF4235 PF14019.6 gi|302348456|ref|YP_003816094.1| - 0.028 14.5 0.1 0.028 14.5 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4235) MatE PF01554.18 gi|302348456|ref|YP_003816094.1| - 3.7 7.2 28.6 0.015 15.0 9.5 3.7 2 2 1 3 3 3 0 MatE dTDP_sugar_isom PF00908.17 gi|302348457|ref|YP_003816095.1| - 2.8e-70 235.4 0.0 3.1e-70 235.2 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase RmlD_sub_bind PF04321.17 gi|302348458|ref|YP_003816096.1| - 1.5e-53 181.8 0.0 1.7e-53 181.6 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|302348458|ref|YP_003816096.1| - 2.6e-14 53.3 0.0 3.9e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|302348458|ref|YP_003816096.1| - 1.3e-08 34.6 0.1 3e-08 33.5 0.1 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|302348458|ref|YP_003816096.1| - 6.8e-08 32.0 0.5 6e-07 28.9 0.5 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NTP_transferase PF00483.23 gi|302348459|ref|YP_003816097.1| - 1.3e-45 156.0 0.0 1.6e-45 155.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|302348459|ref|YP_003816097.1| - 1.4e-11 45.0 1.0 1.7e-11 44.7 0.1 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|302348459|ref|YP_003816097.1| - 9.8e-05 21.5 0.0 0.00014 21.0 0.0 1.1 1 0 0 1 1 1 1 L-fucokinase Hexapep PF00132.24 gi|302348459|ref|YP_003816097.1| - 0.0052 16.5 6.4 0.058 13.2 0.0 4.4 5 0 0 5 5 5 1 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|302348459|ref|YP_003816097.1| - 0.011 15.5 0.0 0.051 13.3 0.0 2.1 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|302348459|ref|YP_003816097.1| - 0.027 12.6 0.2 0.33 9.0 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) GDP_Man_Dehyd PF16363.5 gi|302348460|ref|YP_003816098.1| - 1.5e-61 208.7 0.0 2.1e-61 208.2 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|302348460|ref|YP_003816098.1| - 6e-61 206.0 0.0 7.9e-61 205.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|302348460|ref|YP_003816098.1| - 5.6e-20 71.6 0.0 7.1e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|302348460|ref|YP_003816098.1| - 1e-18 67.4 0.0 1.4e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|302348460|ref|YP_003816098.1| - 1.6e-11 43.9 0.0 5.2e-11 42.2 0.0 1.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|302348460|ref|YP_003816098.1| - 2.3e-11 43.4 0.6 7.4e-10 38.4 0.1 2.5 1 1 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|302348460|ref|YP_003816098.1| - 0.00064 19.7 0.0 0.00094 19.1 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|302348460|ref|YP_003816098.1| - 0.044 13.2 0.2 1.5 8.3 0.2 2.3 1 1 0 1 1 1 0 short chain dehydrogenase NAD_binding_8 PF13450.6 gi|302348460|ref|YP_003816098.1| - 0.12 12.6 0.1 1.6 9.0 0.0 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Glycos_transf_2 PF00535.26 gi|302348461|ref|YP_003816099.1| - 1.1e-17 64.4 0.2 1.9e-17 63.6 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302348461|ref|YP_003816099.1| - 1.6e-07 31.5 0.0 2.7e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|302348461|ref|YP_003816099.1| - 0.026 14.0 0.1 0.045 13.2 0.1 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Methyltransf_21 PF05050.12 gi|302348464|ref|YP_003816102.1| - 2.1e-06 27.9 0.0 3.1e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|302348464|ref|YP_003816102.1| - 0.024 14.4 0.1 0.041 13.6 0.1 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Glycos_transf_1 PF00534.20 gi|302348465|ref|YP_003816103.1| - 5.4e-23 81.4 0.0 7.9e-23 80.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|302348465|ref|YP_003816103.1| - 4.1e-16 59.6 0.0 9e-16 58.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|302348465|ref|YP_003816103.1| - 1.8e-11 44.3 0.0 3.1e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|302348465|ref|YP_003816103.1| - 5.5e-05 23.2 0.0 0.00017 21.6 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|302348466|ref|YP_003816104.1| - 4.6e-13 49.3 0.4 1.2e-12 48.0 0.3 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302348466|ref|YP_003816104.1| - 3.1e-06 27.3 0.0 4.1e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|302348468|ref|YP_003816106.1| - 0.00066 19.5 0.0 0.00068 19.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302348468|ref|YP_003816106.1| - 0.019 14.9 0.0 0.02 14.8 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|302348469|ref|YP_003816107.1| - 2.3e-24 85.8 0.0 3.5e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|302348469|ref|YP_003816107.1| - 2.4e-18 66.8 0.0 4.2e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|302348469|ref|YP_003816107.1| - 3.1e-12 46.8 0.1 4e-11 43.2 0.2 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|302348469|ref|YP_003816107.1| - 8.7e-05 23.0 0.0 0.0039 17.6 0.0 3.1 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|302348470|ref|YP_003816108.1| - 0.0022 17.6 0.0 0.0025 17.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|302348470|ref|YP_003816108.1| - 0.017 15.5 0.0 0.018 15.4 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|302348471|ref|YP_003816109.1| - 5.8e-11 42.2 0.0 8.7e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|302348471|ref|YP_003816109.1| - 1.3e-09 38.6 0.1 2.4e-09 37.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|302348471|ref|YP_003816109.1| - 0.00052 20.0 1.8 0.0051 16.8 0.4 2.9 2 2 0 2 2 2 1 Glycosyltransferase Family 4 XTBD PF11952.8 gi|302348471|ref|YP_003816109.1| - 0.034 13.9 0.0 0.065 13.0 0.0 1.6 1 0 0 1 1 1 0 XRN-Two Binding Domain, XTBD Pox_T4_C PF04490.12 gi|302348471|ref|YP_003816109.1| - 0.15 12.2 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 Poxvirus T4 protein, C terminus Glycos_transf_2 PF00535.26 gi|302348472|ref|YP_003816110.1| - 6.2e-10 39.1 0.1 1.1e-09 38.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302348472|ref|YP_003816110.1| - 0.0077 16.1 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|302348472|ref|YP_003816110.1| - 0.01 15.4 0.0 0.1 12.0 0.0 2.0 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|302348472|ref|YP_003816110.1| - 0.015 15.8 0.0 0.028 14.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 DAHP_snth_FXD PF18152.1 gi|302348472|ref|YP_003816110.1| - 0.14 12.0 0.0 17 5.3 0.0 2.9 3 0 0 3 3 3 0 DAHP synthase ferredoxin-like domain Glycos_transf_2 PF00535.26 gi|302348473|ref|YP_003816111.1| - 1e-09 38.4 0.0 1.5e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302348473|ref|YP_003816111.1| - 2.3e-06 27.7 0.0 6.8e-06 26.1 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Ntox8 PF15545.6 gi|302348473|ref|YP_003816111.1| - 0.0043 17.1 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial toxin 8 Phage_TAC_13 PF16459.5 gi|302348476|ref|YP_003816114.1| - 0.18 12.2 0.0 4.1 7.9 0.0 2.4 2 0 0 2 2 2 0 Phage tail assembly chaperone, TAC Glyco_trans_1_4 PF13692.6 gi|302348477|ref|YP_003816115.1| - 2e-20 73.6 0.1 2.5e-18 66.8 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|302348477|ref|YP_003816115.1| - 8.1e-20 71.0 0.0 2e-19 69.8 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|302348477|ref|YP_003816115.1| - 6.6e-15 55.5 0.3 1.4e-14 54.5 0.3 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|302348477|ref|YP_003816115.1| - 7.2e-08 33.0 3.7 1.6e-07 31.9 1.1 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|302348477|ref|YP_003816115.1| - 7.4e-08 32.7 0.0 1.7e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|302348479|ref|YP_003816117.1| - 7.8e-19 68.1 0.1 1.3e-18 67.4 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302348479|ref|YP_003816117.1| - 4.8e-10 39.7 0.0 1.4e-09 38.2 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|302348479|ref|YP_003816117.1| - 0.00055 19.5 0.7 0.00074 19.1 0.1 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|302348479|ref|YP_003816117.1| - 0.049 13.1 0.0 0.1 12.0 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.20 gi|302348480|ref|YP_003816118.1| - 1e-31 109.8 0.0 3.6e-31 108.0 0.0 1.9 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|302348480|ref|YP_003816118.1| - 1.6e-26 93.3 0.8 7.8e-26 91.1 0.2 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|302348480|ref|YP_003816118.1| - 2.5e-18 66.6 2.3 7.8e-18 65.0 2.3 1.9 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|302348480|ref|YP_003816118.1| - 8.9e-18 65.2 3.7 8.9e-18 65.2 3.7 2.0 3 1 1 4 4 4 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|302348480|ref|YP_003816118.1| - 8.2e-06 25.7 0.1 1.2e-05 25.1 0.1 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|302348480|ref|YP_003816118.1| - 2e-05 24.7 0.0 3.7e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like PIGA PF08288.12 gi|302348480|ref|YP_003816118.1| - 0.03 14.9 0.2 0.13 12.8 0.1 2.1 2 1 1 3 3 3 0 PIGA (GPI anchor biosynthesis) Glycos_transf_1 PF00534.20 gi|302348482|ref|YP_003816120.1| - 1e-28 100.0 0.0 1.7e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|302348482|ref|YP_003816120.1| - 1.2e-28 100.2 5.9 2.2e-28 99.4 5.9 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|302348482|ref|YP_003816120.1| - 2.4e-20 73.6 7.2 2.4e-20 73.6 7.2 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|302348482|ref|YP_003816120.1| - 2.6e-20 73.2 0.0 4.8e-20 72.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|302348482|ref|YP_003816120.1| - 4.2e-08 33.5 0.0 2.6e-07 30.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|302348482|ref|YP_003816120.1| - 8.8e-07 29.0 0.0 2.4e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|302348482|ref|YP_003816120.1| - 0.00097 18.9 1.3 0.0045 16.7 1.3 2.0 1 1 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_2 PF00535.26 gi|302348483|ref|YP_003816121.1| - 2.9e-15 56.5 0.1 7e-15 55.2 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302348483|ref|YP_003816121.1| - 2.6e-06 27.5 0.0 4.7e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 MGC-24 PF05283.11 gi|302348484|ref|YP_003816122.1| - 0.02 15.3 13.3 0.026 14.9 13.3 1.1 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Mucin PF01456.17 gi|302348484|ref|YP_003816122.1| - 0.71 9.9 32.2 1 9.3 32.2 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein TMEM154 PF15102.6 gi|302348484|ref|YP_003816122.1| - 9 6.2 8.8 13 5.7 8.8 1.3 1 0 0 1 1 1 0 TMEM154 protein family SBP_bac_5 PF00496.22 gi|302348485|ref|YP_003816123.1| - 1.3e-06 27.7 0.1 1.5e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF3272 PF11676.8 gi|302348485|ref|YP_003816123.1| - 0.13 12.5 0.4 0.22 11.8 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3272) DUF1917 PF08939.10 gi|302348485|ref|YP_003816123.1| - 0.14 12.1 0.0 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1917) Methyltransf_11 PF08241.12 gi|302348486|ref|YP_003816124.1| - 2e-13 50.8 0.2 4.2e-13 49.8 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|302348486|ref|YP_003816124.1| - 3e-06 27.9 0.1 5.6e-06 27.0 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|302348486|ref|YP_003816124.1| - 3.2e-05 23.8 0.0 4.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|302348486|ref|YP_003816124.1| - 0.0085 16.8 0.0 0.016 16.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|302348486|ref|YP_003816124.1| - 0.016 14.6 0.0 0.18 11.1 0.0 2.1 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|302348486|ref|YP_003816124.1| - 0.031 14.1 0.0 0.081 12.7 0.0 1.8 1 1 1 2 2 2 0 Methyltransferase domain SBP_bac_1 PF01547.25 gi|302348488|ref|YP_003816126.1| - 4.5e-22 79.4 0.4 2e-21 77.3 0.4 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|302348488|ref|YP_003816126.1| - 3.9e-17 63.0 0.1 5.8e-17 62.4 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|302348488|ref|YP_003816126.1| - 1.7e-06 27.9 0.6 0.0014 18.4 0.1 2.6 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Glyco_tranf_2_3 PF13641.6 gi|302348488|ref|YP_003816126.1| - 0.0095 15.8 1.3 0.034 14.0 0.6 2.1 3 0 0 3 3 3 1 Glycosyltransferase like family 2 ATPase_2 PF01637.18 gi|302348489|ref|YP_003816127.1| - 5.8e-21 75.5 0.0 9e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|302348489|ref|YP_003816127.1| - 1e-07 32.0 0.0 0.021 14.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|302348489|ref|YP_003816127.1| - 4.8e-07 30.3 0.3 1e-06 29.2 0.1 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|302348489|ref|YP_003816127.1| - 0.00012 22.3 0.0 0.00028 21.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain CPT PF07931.12 gi|302348489|ref|YP_003816127.1| - 0.012 15.5 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein TssN PF17555.2 gi|302348491|ref|YP_003816129.1| - 0.0064 15.9 1.4 0.0064 15.9 1.4 1.0 1 0 0 1 1 1 1 Type VI secretion system, TssN Fer4_6 PF12837.7 gi|302348492|ref|YP_003816130.1| - 1.5e-19 69.2 34.1 4.1e-08 32.9 4.5 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|302348492|ref|YP_003816130.1| - 2e-18 66.3 40.5 1.5e-07 31.4 11.0 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|302348492|ref|YP_003816130.1| - 1.3e-16 60.9 22.0 3.6e-08 33.9 10.4 3.4 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|302348492|ref|YP_003816130.1| - 3e-15 55.3 43.8 2.7e-07 30.1 5.1 5.8 4 2 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|302348492|ref|YP_003816130.1| - 2.3e-13 49.4 30.2 4.3e-05 23.4 3.3 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|302348492|ref|YP_003816130.1| - 9.8e-12 45.6 22.8 0.0025 18.7 3.0 4.2 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|302348492|ref|YP_003816130.1| - 8e-11 41.9 24.2 1.1e-07 31.8 8.9 3.5 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|302348492|ref|YP_003816130.1| - 1.1e-10 41.5 10.3 1.1e-10 41.5 10.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|302348492|ref|YP_003816130.1| - 4.1e-10 39.6 30.9 1.3e-06 28.4 13.0 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|302348492|ref|YP_003816130.1| - 2.2e-08 34.5 43.5 0.001 19.9 5.2 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|302348492|ref|YP_003816130.1| - 6.3e-08 32.5 31.8 0.0015 18.9 3.7 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|302348492|ref|YP_003816130.1| - 1.6e-06 28.5 22.9 0.043 14.2 0.4 4.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|302348492|ref|YP_003816130.1| - 5e-06 27.0 29.2 0.18 12.4 2.6 4.1 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|302348492|ref|YP_003816130.1| - 0.0031 18.2 4.4 0.0031 18.2 4.4 4.6 2 2 1 3 3 3 1 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|302348492|ref|YP_003816130.1| - 0.02 15.7 9.7 0.053 14.4 1.4 4.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|302348492|ref|YP_003816130.1| - 0.35 11.4 26.0 0.44 11.1 2.8 4.5 4 1 1 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I PPC PF04151.15 gi|302348493|ref|YP_003816131.1| - 0.59 11.3 10.2 0.8 10.8 2.6 3.1 3 0 0 3 3 3 0 Bacterial pre-peptidase C-terminal domain AFOR_C PF01314.18 gi|302348497|ref|YP_003816135.1| - 3.7e-99 332.3 0.1 4.7e-99 332.0 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|302348497|ref|YP_003816135.1| - 4.7e-65 219.2 0.1 8.8e-65 218.3 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain RPEL PF02755.15 gi|302348497|ref|YP_003816135.1| - 0.97 9.2 3.4 1.5 8.6 0.2 2.7 3 0 0 3 3 3 0 RPEL repeat Lactamase_B PF00753.27 gi|302348498|ref|YP_003816136.1| - 6.9e-23 81.7 0.2 1.3e-22 80.8 0.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|302348498|ref|YP_003816136.1| - 0.00011 21.8 0.0 0.00028 20.4 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Fe-ADH PF00465.19 gi|302348499|ref|YP_003816137.1| - 9.1e-97 324.1 0.0 1e-96 323.9 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|302348499|ref|YP_003816137.1| - 5.7e-11 42.6 0.7 3.7e-10 39.9 0.0 2.0 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase YbjQ_1 PF01906.17 gi|302348500|ref|YP_003816138.1| - 9.3e-37 125.8 2.7 1.1e-36 125.7 2.7 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|302348500|ref|YP_003816138.1| - 2.8e-06 27.7 0.3 0.0024 18.3 0.1 2.2 2 0 0 2 2 2 2 Selenium binding protein Fe-ADH PF00465.19 gi|302348500|ref|YP_003816138.1| - 0.037 12.8 0.0 0.043 12.6 0.0 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase RcsF PF16358.5 gi|302348500|ref|YP_003816138.1| - 0.15 12.1 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 RcsF lipoprotein Rubrerythrin PF02915.17 gi|302348501|ref|YP_003816139.1| - 0.00046 20.6 1.5 0.33 11.3 0.1 2.8 2 1 1 3 3 3 2 Rubrerythrin MiaE_2 PF13794.6 gi|302348501|ref|YP_003816139.1| - 0.011 15.5 0.3 0.021 14.6 0.2 1.5 1 1 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like Amidohydro_1 PF01979.20 gi|302348503|ref|YP_003816141.1| - 3.2e-48 164.8 0.8 3.7e-48 164.6 0.8 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|302348503|ref|YP_003816141.1| - 3.8e-20 72.8 6.3 3.3e-14 53.2 2.6 2.3 2 0 0 2 2 2 2 Amidohydrolase family Urocanase_C PF17392.2 gi|302348503|ref|YP_003816141.1| - 0.059 12.8 0.5 0.25 10.8 0.2 2.1 2 0 0 2 2 2 0 Urocanase C-terminal domain AAA_lid_3 PF17862.1 gi|302348503|ref|YP_003816141.1| - 0.32 10.8 2.1 1.6 8.6 0.6 2.7 2 0 0 2 2 2 0 AAA+ lid domain ABC_membrane PF00664.23 gi|302348504|ref|YP_003816142.1| - 6.4e-43 147.4 5.4 8.1e-43 147.0 5.4 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|302348504|ref|YP_003816142.1| - 1.6e-34 119.4 0.0 2.6e-34 118.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter DUF1854 PF08909.11 gi|302348504|ref|YP_003816142.1| - 8.2e-28 96.8 0.0 1.9e-27 95.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1854) AAA_21 PF13304.6 gi|302348504|ref|YP_003816142.1| - 7.3e-06 26.0 0.0 0.091 12.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|302348504|ref|YP_003816142.1| - 9.2e-05 22.0 0.1 0.015 14.7 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_membrane_3 PF13748.6 gi|302348504|ref|YP_003816142.1| - 0.00088 18.6 2.1 0.00088 18.6 2.1 2.2 2 0 0 2 2 2 1 ABC transporter transmembrane region AAA_16 PF13191.6 gi|302348504|ref|YP_003816142.1| - 0.0023 18.4 0.0 0.021 15.2 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|302348504|ref|YP_003816142.1| - 0.0024 18.2 0.1 0.069 13.4 0.1 2.9 2 1 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|302348504|ref|YP_003816142.1| - 0.0029 17.7 0.1 0.0082 16.3 0.1 1.7 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_29 PF13555.6 gi|302348504|ref|YP_003816142.1| - 0.0048 16.6 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|302348504|ref|YP_003816142.1| - 0.0098 16.0 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|302348504|ref|YP_003816142.1| - 0.036 14.0 0.2 1.5 8.7 0.0 2.4 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|302348504|ref|YP_003816142.1| - 0.046 13.3 0.0 1.2 8.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain IIGP PF05049.13 gi|302348504|ref|YP_003816142.1| - 0.065 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) RsgA_GTPase PF03193.16 gi|302348504|ref|YP_003816142.1| - 0.066 13.1 0.3 0.15 11.9 0.3 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|302348504|ref|YP_003816142.1| - 0.097 12.4 0.1 1.7 8.3 0.0 2.8 4 0 0 4 4 4 0 AAA domain B3_4 PF03483.17 gi|302348505|ref|YP_003816143.1| - 7.1e-24 84.4 0.0 8.8e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 B3/4 domain DrsE_2 PF13686.6 gi|302348507|ref|YP_003816145.1| - 4.4e-15 55.9 0.5 1.6e-09 37.9 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|302348507|ref|YP_003816145.1| - 0.009 16.4 0.1 0.01 16.2 0.1 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family Linocin_M18 PF04454.12 gi|302348508|ref|YP_003816146.1| - 4.3e-16 59.0 0.0 6.7e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|302348508|ref|YP_003816146.1| - 3.6e-07 30.7 0.0 5.7e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|302348508|ref|YP_003816146.1| - 0.0086 16.4 0.1 0.018 15.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) COQ7 PF03232.13 gi|302348508|ref|YP_003816146.1| - 0.19 11.5 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 PfkB PF00294.24 gi|302348512|ref|YP_003816150.1| - 2.8e-54 184.5 1.3 4.9e-54 183.7 1.3 1.3 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|302348512|ref|YP_003816150.1| - 1.2e-10 41.2 0.1 1.9e-10 40.5 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|302348512|ref|YP_003816150.1| - 0.00095 18.7 0.2 0.0023 17.5 0.1 1.5 2 0 0 2 2 2 1 Carbohydrate kinase Imm1 PF14430.6 gi|302348512|ref|YP_003816150.1| - 0.045 14.4 0.1 0.12 13.1 0.1 1.8 1 1 0 1 1 1 0 Immunity protein Imm1 EamA PF00892.20 gi|302348514|ref|YP_003816152.1| - 8e-23 81.1 29.9 3.7e-14 53.1 14.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|302348514|ref|YP_003816152.1| - 0.0099 15.9 2.5 0.17 11.9 0.6 2.3 2 0 0 2 2 2 2 Putative transmembrane family 234 Mg_trans_NIPA PF05653.14 gi|302348514|ref|YP_003816152.1| - 0.021 13.9 3.6 0.039 13.1 3.6 1.4 1 0 0 1 1 1 0 Magnesium transporter NIPA GATase_4 PF13230.6 gi|302348515|ref|YP_003816153.1| - 4.6e-07 29.0 0.0 6.1e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|302348515|ref|YP_003816153.1| - 1.4e-06 28.6 0.0 2.3e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain HTH_24 PF13412.6 gi|302348516|ref|YP_003816154.1| - 1e-08 34.6 0.0 1.7e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|302348516|ref|YP_003816154.1| - 3.9e-08 33.0 0.0 7.6e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|302348516|ref|YP_003816154.1| - 2.5e-06 27.3 0.0 4.8e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|302348516|ref|YP_003816154.1| - 8.6e-06 25.7 0.0 1.9e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|302348516|ref|YP_003816154.1| - 2.8e-05 23.9 0.0 4.2e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|302348516|ref|YP_003816154.1| - 3.4e-05 23.6 0.0 7.2e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|302348516|ref|YP_003816154.1| - 0.00014 22.3 0.0 0.00023 21.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|302348516|ref|YP_003816154.1| - 0.0012 18.6 0.7 0.0021 17.8 0.7 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain DprA_WH PF17782.1 gi|302348516|ref|YP_003816154.1| - 0.054 13.6 0.0 0.15 12.2 0.0 1.8 1 0 0 1 1 1 0 DprA winged helix domain DUF2250 PF10007.9 gi|302348516|ref|YP_003816154.1| - 0.061 13.5 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1936 PF09151.10 gi|302348516|ref|YP_003816154.1| - 0.13 12.2 0.2 0.22 11.5 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) DUF2754 PF10953.8 gi|302348518|ref|YP_003816156.1| - 0.0017 18.6 1.9 0.0038 17.4 1.9 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2754) Methyltransf_11 PF08241.12 gi|302348519|ref|YP_003816157.1| - 1.8e-18 67.0 0.0 2.6e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|302348519|ref|YP_003816157.1| - 1.1e-16 61.3 0.0 1.4e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|302348519|ref|YP_003816157.1| - 1e-13 51.4 0.0 1.3e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|302348519|ref|YP_003816157.1| - 3.5e-10 39.6 0.0 4.2e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|302348519|ref|YP_003816157.1| - 5.1e-10 40.0 0.0 7.1e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|302348519|ref|YP_003816157.1| - 1.1e-09 38.3 0.0 1.3e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|302348519|ref|YP_003816157.1| - 1.7e-05 24.5 0.0 8.1e-05 22.3 0.0 1.8 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|302348519|ref|YP_003816157.1| - 0.0017 17.9 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|302348519|ref|YP_003816157.1| - 0.086 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|302348519|ref|YP_003816157.1| - 0.12 12.3 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain 5-FTHF_cyc-lig PF01812.20 gi|302348520|ref|YP_003816158.1| - 1.1e-35 123.2 0.0 1.3e-35 122.9 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Mucin PF01456.17 gi|302348522|ref|YP_003816160.1| - 0.066 13.2 13.6 0.12 12.3 13.6 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein SSP160 PF06933.11 gi|302348522|ref|YP_003816160.1| - 1.9 6.6 11.6 3.1 5.9 11.6 1.3 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 SNARE_assoc PF09335.11 gi|302348523|ref|YP_003816161.1| - 2.8e-17 63.3 5.1 2.8e-17 63.3 5.1 2.3 2 1 0 2 2 2 1 SNARE associated Golgi protein ABC_tran PF00005.27 gi|302348524|ref|YP_003816162.1| - 1.1e-24 87.5 0.0 1.9e-24 86.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302348524|ref|YP_003816162.1| - 9.1e-09 35.5 0.5 2e-05 24.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|302348524|ref|YP_003816162.1| - 0.027 14.2 1.4 0.086 12.5 0.2 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|302348524|ref|YP_003816162.1| - 0.072 12.7 0.7 0.072 12.7 0.7 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|302348524|ref|YP_003816162.1| - 0.099 13.1 0.1 0.15 12.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain GFRP PF06399.13 gi|302348524|ref|YP_003816162.1| - 0.17 11.8 0.1 0.84 9.6 0.0 2.0 1 1 1 2 2 2 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) AAA_33 PF13671.6 gi|302348524|ref|YP_003816162.1| - 0.18 12.0 1.1 0.82 9.8 0.4 2.2 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|302348524|ref|YP_003816162.1| - 0.18 11.6 0.1 0.39 10.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC2_membrane_2 PF12679.7 gi|302348525|ref|YP_003816163.1| - 3.4e-16 59.4 19.0 3.4e-16 59.4 19.0 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|302348525|ref|YP_003816163.1| - 5.2e-05 22.5 16.1 5.2e-05 22.5 16.1 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|302348525|ref|YP_003816163.1| - 0.00012 21.7 12.3 0.00012 21.7 12.3 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|302348525|ref|YP_003816163.1| - 4.3 7.2 19.0 0.05 13.6 10.8 2.0 3 0 0 3 3 3 0 ABC-2 family transporter protein F420_ligase PF01996.16 gi|302348526|ref|YP_003816164.1| - 2.7e-58 197.2 0.0 3.1e-58 197.0 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Radical_SAM PF04055.21 gi|302348527|ref|YP_003816165.1| - 2.4e-16 60.6 0.0 3.5e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 gi|302348527|ref|YP_003816165.1| - 0.13 12.3 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain Mrr_cat PF04471.12 gi|302348528|ref|YP_003816166.1| - 0.00012 22.1 0.0 0.00024 21.1 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease NERD PF08378.11 gi|302348528|ref|YP_003816166.1| - 0.0026 18.2 0.0 0.0035 17.8 0.0 1.3 1 0 0 1 1 1 1 Nuclease-related domain MarR_2 PF12802.7 gi|302348528|ref|YP_003816166.1| - 0.0032 17.3 0.7 0.2 11.5 0.1 2.7 1 1 1 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|302348528|ref|YP_003816166.1| - 0.012 15.6 0.1 3.3 7.8 0.1 2.5 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|302348528|ref|YP_003816166.1| - 0.034 14.2 0.6 0.25 11.4 0.1 2.6 2 1 1 3 3 3 0 Winged helix-turn helix HTH_24 PF13412.6 gi|302348528|ref|YP_003816166.1| - 0.037 13.6 0.0 0.08 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|302348528|ref|YP_003816166.1| - 0.071 12.9 0.7 0.16 11.8 0.1 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|302348528|ref|YP_003816166.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.11 gi|302348528|ref|YP_003816166.1| - 0.16 12.0 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DprA_WH PF17782.1 gi|302348528|ref|YP_003816166.1| - 0.43 10.7 4.0 1.5 9.0 0.1 2.8 3 0 0 3 3 3 0 DprA winged helix domain OrfB_Zn_ribbon PF07282.11 gi|302348530|ref|YP_003816168.1| - 2.1e-19 69.2 0.0 3.8e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1168 PF06658.12 gi|302348530|ref|YP_003816168.1| - 0.036 13.9 2.2 0.067 13.0 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1168) Resolvase PF00239.21 gi|302348531|ref|YP_003816169.1| - 1.3e-21 77.2 0.1 1.9e-21 76.7 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|302348531|ref|YP_003816169.1| - 1.6e-16 60.2 0.6 3.4e-16 59.1 0.6 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|302348531|ref|YP_003816169.1| - 4.2e-07 29.6 1.7 7.5e-07 28.8 0.4 2.1 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 gi|302348531|ref|YP_003816169.1| - 4e-05 23.6 0.1 9.3e-05 22.5 0.1 1.7 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|302348531|ref|YP_003816169.1| - 0.00016 21.4 0.2 0.00088 19.0 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|302348531|ref|YP_003816169.1| - 0.00068 19.7 0.7 0.0055 16.8 0.1 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|302348531|ref|YP_003816169.1| - 0.004 17.1 0.0 0.0088 16.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix Phage_AlpA PF05930.12 gi|302348531|ref|YP_003816169.1| - 0.018 14.8 0.0 0.035 13.9 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) Exc PF07825.11 gi|302348531|ref|YP_003816169.1| - 0.019 14.9 0.1 0.033 14.2 0.1 1.3 1 0 0 1 1 1 0 Excisionase-like protein DUF2862 PF11061.8 gi|302348531|ref|YP_003816169.1| - 0.052 13.4 0.2 0.18 11.7 0.1 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2862) RWP-RK PF02042.15 gi|302348531|ref|YP_003816169.1| - 0.055 13.4 0.0 0.82 9.7 0.0 2.4 2 0 0 2 2 2 0 RWP-RK domain YcxB PF14317.6 gi|302348531|ref|YP_003816169.1| - 0.072 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 YcxB-like protein HTH_8 PF02954.19 gi|302348531|ref|YP_003816169.1| - 0.1 12.4 0.0 0.28 11.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_psq PF05225.16 gi|302348531|ref|YP_003816169.1| - 0.11 12.2 1.1 0.58 9.9 0.0 2.5 3 0 0 3 3 3 0 helix-turn-helix, Psq domain DUF3853 PF12964.7 gi|302348531|ref|YP_003816169.1| - 0.13 12.5 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3853) Glyco_hydro_97 PF10566.9 gi|302348531|ref|YP_003816169.1| - 0.13 11.5 0.0 0.16 11.3 0.0 1.3 1 1 0 1 1 1 0 Glycoside hydrolase 97 TPPK_C PF12555.8 gi|302348532|ref|YP_003816170.1| - 0.58 10.2 5.0 3 7.9 5.0 2.3 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal MFS_1 PF07690.16 gi|302348534|ref|YP_003816172.1| - 2.5e-23 82.6 63.5 1.2e-18 67.2 37.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|302348534|ref|YP_003816172.1| - 1.4e-05 24.1 4.7 0.0002 20.3 0.8 2.3 2 0 0 2 2 2 2 MFS_1 like family GerA PF03323.13 gi|302348534|ref|YP_003816172.1| - 0.0091 14.5 0.8 0.0091 14.5 0.8 1.5 2 0 0 2 2 2 1 Bacillus/Clostridium GerA spore germination protein DUF131 PF01998.17 gi|302348535|ref|YP_003816173.1| - 5.2e-20 70.9 8.5 5.2e-20 70.9 8.5 1.7 1 1 1 2 2 2 1 Protein of unknown function DUF131 Comm PF15957.5 gi|302348535|ref|YP_003816173.1| - 0.16 12.3 2.6 0.62 10.4 0.0 2.0 2 0 0 2 2 2 0 Commissureless SOP4 PF17081.5 gi|302348535|ref|YP_003816173.1| - 0.21 11.1 0.8 0.24 10.9 0.8 1.1 1 0 0 1 1 1 0 Suppressor of PMA 1-7 protein DUF898 PF05987.13 gi|302348535|ref|YP_003816173.1| - 0.37 9.8 6.3 0.45 9.5 6.3 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) MIG-14_Wnt-bd PF06664.12 gi|302348535|ref|YP_003816173.1| - 0.47 9.6 4.3 0.5 9.5 4.3 1.0 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion FA_desaturase PF00487.24 gi|302348535|ref|YP_003816173.1| - 0.48 10.2 5.1 0.58 10.0 5.1 1.1 1 0 0 1 1 1 0 Fatty acid desaturase ATP-synt_8 PF00895.20 gi|302348535|ref|YP_003816173.1| - 0.56 10.7 3.0 28 5.3 1.2 2.3 2 0 0 2 2 2 0 ATP synthase protein 8 DUF2140 PF09911.9 gi|302348535|ref|YP_003816173.1| - 0.67 9.5 3.1 12 5.4 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2140) DUF5362 PF17319.2 gi|302348535|ref|YP_003816173.1| - 0.68 9.8 14.1 1.7e+02 2.2 14.0 2.1 1 1 0 1 1 1 0 Family of unknown function (DUF5362) RDD PF06271.12 gi|302348535|ref|YP_003816173.1| - 1.1 9.5 8.8 8 6.7 8.8 1.9 1 1 0 1 1 1 0 RDD family DUF2207 PF09972.9 gi|302348535|ref|YP_003816173.1| - 1.1 8.0 8.3 1.2 7.9 8.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2976 PF11190.8 gi|302348535|ref|YP_003816173.1| - 1.1 9.1 12.9 0.18 11.6 1.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) EphA2_TM PF14575.6 gi|302348535|ref|YP_003816173.1| - 2.2 9.2 5.1 41 5.1 2.4 2.2 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain DUF4381 PF14316.6 gi|302348535|ref|YP_003816173.1| - 2.6 8.3 5.9 13 6.0 1.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) HemY_N PF07219.13 gi|302348535|ref|YP_003816173.1| - 3.4 7.9 7.5 5.5 7.2 2.8 2.1 2 0 0 2 2 2 0 HemY protein N-terminus OppC_N PF12911.7 gi|302348535|ref|YP_003816173.1| - 5.4 7.1 11.1 19 5.3 0.3 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF4834 PF16118.5 gi|302348535|ref|YP_003816173.1| - 6.5 7.8 6.2 21 6.2 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4834) GspL_C PF12693.7 gi|302348535|ref|YP_003816173.1| - 9 6.1 6.5 1.3 8.8 1.4 1.9 2 0 0 2 2 2 0 GspL periplasmic domain Pro-kuma_activ PF09286.11 gi|302348536|ref|YP_003816174.1| - 8e-17 61.9 0.0 1.4e-16 61.1 0.0 1.4 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain DUF1616 PF07760.11 gi|302348537|ref|YP_003816175.1| - 3.2e-06 26.8 0.0 4.8e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Ferric_reduct PF01794.19 gi|302348537|ref|YP_003816175.1| - 0.046 13.8 0.3 0.046 13.8 0.3 1.8 2 0 0 2 2 2 0 Ferric reductase like transmembrane component DUF4179 PF13786.6 gi|302348537|ref|YP_003816175.1| - 0.87 10.1 3.7 2.1 8.9 0.5 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) PEP-utilizers_C PF02896.18 gi|302348538|ref|YP_003816176.1| - 2.8e-83 279.4 0.2 4.8e-83 278.7 0.2 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|302348538|ref|YP_003816176.1| - 7.8e-58 196.3 0.0 1.9e-48 165.4 0.0 2.4 1 1 1 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|302348538|ref|YP_003816176.1| - 1.3e-27 95.3 0.5 3e-27 94.1 0.5 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Aminotran_MocR PF12897.7 gi|302348538|ref|YP_003816176.1| - 0.08 11.7 0.1 0.16 10.7 0.1 1.4 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase Snapin_Pallidin PF14712.6 gi|302348538|ref|YP_003816176.1| - 0.63 10.5 2.1 8.2 6.9 0.1 2.8 3 0 0 3 3 3 0 Snapin/Pallidin FlaC_arch PF05377.11 gi|302348538|ref|YP_003816176.1| - 0.65 10.4 5.4 16 6.0 0.3 3.9 4 0 0 4 4 4 0 Flagella accessory protein C (FlaC) HSCB_C PF07743.13 gi|302348538|ref|YP_003816176.1| - 4.6 7.8 9.5 0.59 10.7 0.6 4.0 5 0 0 5 5 5 0 HSCB C-terminal oligomerisation domain ThiS PF02597.20 gi|302348539|ref|YP_003816177.1| - 9.1e-12 45.4 0.0 1e-11 45.3 0.0 1.1 1 0 0 1 1 1 1 ThiS family AA_permease_2 PF13520.6 gi|302348540|ref|YP_003816178.1| - 1.3e-23 83.6 44.4 1.7e-23 83.1 44.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|302348540|ref|YP_003816178.1| - 5.5e-19 68.1 44.4 9.7e-19 67.3 44.4 1.3 1 1 0 1 1 1 1 Amino acid permease Herpes_HEPA PF03324.14 gi|302348540|ref|YP_003816178.1| - 0.0028 18.1 0.8 0.32 11.5 0.2 3.1 1 1 1 3 3 3 1 Herpesvirus DNA helicase/primase complex associated protein Phage_holin_Dp1 PF16938.5 gi|302348540|ref|YP_003816178.1| - 0.27 11.5 8.3 0.69 10.2 0.3 3.7 3 0 0 3 3 3 0 Putative phage holin Dp-1 DUF4381 PF14316.6 gi|302348540|ref|YP_003816178.1| - 0.62 10.3 4.8 12 6.1 1.4 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Peptidase_M32 PF02074.15 gi|302348541|ref|YP_003816179.1| - 4e-162 540.4 0.0 4.5e-162 540.2 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase PEX-2N PF09263.10 gi|302348541|ref|YP_003816179.1| - 0.044 14.1 0.0 0.17 12.2 0.0 1.9 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal PAS_8 PF13188.7 gi|302348541|ref|YP_003816179.1| - 0.059 13.4 0.0 14 5.8 0.0 3.3 3 1 0 3 3 3 0 PAS domain Aldedh PF00171.22 gi|302348542|ref|YP_003816180.1| - 7.2e-137 456.7 0.0 9.9e-137 456.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|302348542|ref|YP_003816180.1| - 2.8e-05 23.4 0.0 0.00019 20.6 0.0 2.3 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Med28 PF11594.8 gi|302348542|ref|YP_003816180.1| - 0.13 12.3 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Mediator complex subunit 28 SPW PF03779.14 gi|302348542|ref|YP_003816180.1| - 0.16 11.6 1.2 0.43 10.2 1.2 1.6 1 0 0 1 1 1 0 SPW repeat DUF973 PF06157.11 gi|302348543|ref|YP_003816181.1| - 1.3e-28 100.0 26.9 1.4e-28 99.9 26.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|302348543|ref|YP_003816181.1| - 1.3 9.3 34.2 0.065 13.5 13.0 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF996) DUF973 PF06157.11 gi|302348544|ref|YP_003816182.1| - 4.5e-32 111.4 21.8 2e-31 109.2 21.8 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF973) DUF2973 PF11189.8 gi|302348544|ref|YP_003816182.1| - 0.41 10.8 0.1 0.41 10.8 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2973) YtpI PF14007.6 gi|302348544|ref|YP_003816182.1| - 2.6 8.2 18.4 14 5.9 12.4 2.4 2 0 0 2 2 2 0 YtpI-like protein DUF5080 PF16883.5 gi|302348544|ref|YP_003816182.1| - 5.3 7.1 14.8 0.14 12.3 6.4 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF5080) SPASM PF13186.6 gi|302348545|ref|YP_003816183.1| - 3.2e-11 43.6 0.1 6.2e-11 42.6 0.1 1.5 1 1 0 1 1 1 1 Iron-sulfur cluster-binding domain PGM_PMM_I PF02878.16 gi|302348546|ref|YP_003816184.1| - 9.1e-43 145.3 0.1 1.5e-42 144.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|302348546|ref|YP_003816184.1| - 2.3e-27 95.6 0.0 4.1e-27 94.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|302348546|ref|YP_003816184.1| - 2.9e-16 59.7 0.0 5.9e-16 58.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|302348546|ref|YP_003816184.1| - 2.2e-10 40.5 0.2 5.3e-10 39.3 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Trm112p PF03966.16 gi|302348547|ref|YP_003816185.1| - 1.1e-13 51.5 0.5 1.8e-13 50.9 0.5 1.3 1 0 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.6 gi|302348547|ref|YP_003816185.1| - 0.022 15.1 2.7 0.15 12.5 2.7 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|302348547|ref|YP_003816185.1| - 0.23 11.0 5.5 0.59 9.7 0.0 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding Elf1 PF05129.13 gi|302348547|ref|YP_003816185.1| - 0.3 11.1 4.7 0.75 9.9 0.5 2.4 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DUF35_N PF12172.8 gi|302348547|ref|YP_003816185.1| - 0.53 10.2 0.0 0.53 10.2 0.0 2.8 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RRN7 PF11781.8 gi|302348547|ref|YP_003816185.1| - 2.2 8.1 8.1 14 5.5 0.6 3.4 2 1 1 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Prim_Zn_Ribbon PF08273.12 gi|302348547|ref|YP_003816185.1| - 5.2 7.4 6.4 16 5.9 0.0 2.8 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase Cdc6_C PF09079.11 gi|302348548|ref|YP_003816186.1| - 3.8e-21 74.9 0.1 1.3e-20 73.2 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|302348548|ref|YP_003816186.1| - 9.4e-13 48.6 0.0 2.7e-12 47.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|302348548|ref|YP_003816186.1| - 1.2e-10 42.1 1.3 7.1e-09 36.3 0.2 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|302348548|ref|YP_003816186.1| - 2.7e-07 31.1 0.0 2.2e-06 28.1 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|302348548|ref|YP_003816186.1| - 5.7e-06 26.4 0.2 5.4e-05 23.2 0.2 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|302348548|ref|YP_003816186.1| - 1.3e-05 24.7 0.0 3.6e-05 23.3 0.0 1.7 3 0 0 3 3 3 1 Bacterial TniB protein AAA_32 PF13654.6 gi|302348548|ref|YP_003816186.1| - 0.00023 20.1 0.2 0.017 13.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|302348548|ref|YP_003816186.1| - 0.0015 17.8 0.0 0.0028 16.9 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain RHH_1 PF01402.21 gi|302348548|ref|YP_003816186.1| - 0.0017 18.2 0.0 0.011 15.6 0.0 2.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DEAD PF00270.29 gi|302348548|ref|YP_003816186.1| - 0.0077 16.0 0.2 0.52 10.1 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_assoc_2 PF16193.5 gi|302348548|ref|YP_003816186.1| - 0.014 15.7 0.3 0.036 14.4 0.3 1.6 1 0 0 1 1 1 0 AAA C-terminal domain DUF2075 PF09848.9 gi|302348548|ref|YP_003816186.1| - 0.018 14.3 0.0 0.024 13.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.13 gi|302348548|ref|YP_003816186.1| - 0.037 13.2 0.0 0.1 11.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DAO_C PF16901.5 gi|302348548|ref|YP_003816186.1| - 0.042 13.7 0.0 0.096 12.6 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase AAA_18 PF13238.6 gi|302348548|ref|YP_003816186.1| - 0.13 12.9 0.0 0.4 11.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain PCP_red PF08369.10 gi|302348548|ref|YP_003816186.1| - 0.43 10.8 1.8 13 6.1 0.3 3.5 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit Sulf_transp PF04143.14 gi|302348549|ref|YP_003816187.1| - 2e-24 86.7 25.0 2e-24 86.7 25.0 1.9 2 1 0 2 2 2 1 Sulphur transport MFS_1 PF07690.16 gi|302348550|ref|YP_003816188.1| - 2.6e-07 29.9 51.7 5.4e-06 25.6 29.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1414 PF07208.11 gi|302348550|ref|YP_003816188.1| - 0.047 13.7 1.0 0.047 13.7 1.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1414) Sua5_yciO_yrdC PF01300.18 gi|302348551|ref|YP_003816189.1| - 2.2e-59 200.0 0.0 1.4e-58 197.4 0.0 1.9 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.13 gi|302348551|ref|YP_003816189.1| - 4.6e-24 85.5 0.0 6.7e-24 85.0 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding baeRF_family11 PF18855.1 gi|302348551|ref|YP_003816189.1| - 0.0074 16.6 0.0 0.025 14.9 0.0 1.9 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 11 Se-cys_synth_N PF12390.8 gi|302348552|ref|YP_003816190.1| - 0.03 14.5 0.8 0.064 13.5 0.8 1.7 1 1 0 1 1 1 0 Selenocysteine synthase N terminal PEGA PF08308.11 gi|302348553|ref|YP_003816191.1| - 8.7e-10 38.4 8.1 0.0002 21.2 0.9 3.2 3 0 0 3 3 3 2 PEGA domain CarboxypepD_reg PF13620.6 gi|302348553|ref|YP_003816191.1| - 0.0063 16.8 1.8 0.0063 16.8 1.8 4.4 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain TENA_THI-4 PF03070.16 gi|302348554|ref|YP_003816192.1| - 0.0005 19.9 0.0 0.02 14.7 0.0 2.1 2 0 0 2 2 2 2 TENA/THI-4/PQQC family MFS_1 PF07690.16 gi|302348555|ref|YP_003816193.1| - 6.9e-18 64.7 50.6 3.8e-12 45.8 36.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3834 PF12916.7 gi|302348556|ref|YP_003816194.1| - 5.2e-63 211.9 0.0 5.9e-63 211.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) SBP_bac_3 PF00497.20 gi|302348556|ref|YP_003816194.1| - 0.018 14.5 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Lactamase_B PF00753.27 gi|302348558|ref|YP_003816196.1| - 1.1e-18 68.0 0.1 1.4e-18 67.6 0.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|302348558|ref|YP_003816196.1| - 0.0033 17.0 0.1 0.0044 16.5 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DrsE PF02635.15 gi|302348559|ref|YP_003816197.1| - 5.7e-05 23.5 0.0 8.2e-05 22.9 0.0 1.3 1 1 0 1 1 1 1 DsrE/DsrF-like family Glyco_transf_4 PF13439.6 gi|302348559|ref|YP_003816197.1| - 0.013 15.5 0.1 0.016 15.2 0.1 1.2 1 0 0 1 1 1 0 Glycosyltransferase Family 4 tRNA_anti-codon PF01336.25 gi|302348560|ref|YP_003816198.1| - 6.2e-05 22.9 0.1 7.7e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain AFOR_C PF01314.18 gi|302348561|ref|YP_003816199.1| - 4.2e-118 394.7 0.0 5.2e-118 394.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|302348561|ref|YP_003816199.1| - 3.8e-73 245.6 0.3 7.7e-73 244.6 0.3 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PALP PF00291.25 gi|302348563|ref|YP_003816201.1| - 4.4e-50 170.8 4.2 4.9e-50 170.6 4.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Adenine_deam_C PF13382.6 gi|302348563|ref|YP_003816201.1| - 0.0037 16.6 0.1 0.0078 15.6 0.1 1.5 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain zf-ribbon_3 PF13248.6 gi|302348563|ref|YP_003816201.1| - 0.024 14.0 1.6 0.6 9.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|302348563|ref|YP_003816201.1| - 0.033 14.1 4.1 2.5 8.1 0.4 2.5 2 0 0 2 2 2 0 Nudix N-terminal HypA PF01155.19 gi|302348563|ref|YP_003816201.1| - 0.076 13.0 0.3 0.14 12.2 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|302348563|ref|YP_003816201.1| - 0.095 12.5 4.6 0.26 11.1 4.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|302348563|ref|YP_003816201.1| - 0.11 12.0 3.2 0.31 10.6 3.2 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|302348563|ref|YP_003816201.1| - 0.13 11.9 3.5 1.1 9.0 0.1 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|302348563|ref|YP_003816201.1| - 0.31 11.0 1.7 0.66 9.9 1.7 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NRDD PF13597.6 gi|302348563|ref|YP_003816201.1| - 0.35 9.6 0.4 0.44 9.3 0.4 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf_UBZ PF18439.1 gi|302348563|ref|YP_003816201.1| - 0.44 10.2 1.5 12 5.6 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DNA_ligase_ZBD PF03119.16 gi|302348563|ref|YP_003816201.1| - 1.8 8.6 7.4 0.4 10.7 0.2 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-FPG_IleRS PF06827.14 gi|302348563|ref|YP_003816201.1| - 2.1 8.3 6.9 3.3 7.6 0.5 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS ThiF PF00899.21 gi|302348564|ref|YP_003816202.1| - 1.9e-55 187.9 0.1 3.4e-55 187.1 0.1 1.3 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|302348564|ref|YP_003816202.1| - 0.0058 16.0 0.0 0.11 11.8 0.1 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|302348564|ref|YP_003816202.1| - 0.0085 16.2 0.4 0.078 13.0 0.0 2.4 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|302348564|ref|YP_003816202.1| - 0.016 14.5 0.1 0.024 13.9 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|302348564|ref|YP_003816202.1| - 0.041 13.8 0.8 0.1 12.4 0.8 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|302348564|ref|YP_003816202.1| - 0.045 14.2 0.3 0.12 12.8 0.3 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.12 gi|302348564|ref|YP_003816202.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.6 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ELFV_dehydrog PF00208.21 gi|302348564|ref|YP_003816202.1| - 0.13 12.0 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase T2SSE PF00437.20 gi|302348565|ref|YP_003816203.1| - 3.2e-14 52.7 0.0 6.2e-14 51.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|302348565|ref|YP_003816203.1| - 0.0001 22.8 0.0 0.00054 20.5 0.0 2.3 3 0 0 3 3 1 1 AAA domain AAA_25 PF13481.6 gi|302348565|ref|YP_003816203.1| - 0.00011 21.9 0.1 0.00028 20.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|302348565|ref|YP_003816203.1| - 0.0012 18.2 0.0 0.0025 17.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|302348565|ref|YP_003816203.1| - 0.0018 18.7 0.0 0.0036 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain MeaB PF03308.16 gi|302348565|ref|YP_003816203.1| - 0.0021 17.1 0.0 0.004 16.2 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 gi|302348565|ref|YP_003816203.1| - 0.0026 17.5 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Thymidylate_kin PF02223.17 gi|302348565|ref|YP_003816203.1| - 0.0037 16.9 0.0 0.0094 15.7 0.0 1.7 1 1 0 1 1 1 1 Thymidylate kinase AAA_30 PF13604.6 gi|302348565|ref|YP_003816203.1| - 0.005 16.6 0.0 0.0094 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|302348565|ref|YP_003816203.1| - 0.0068 16.4 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|302348565|ref|YP_003816203.1| - 0.0072 16.1 0.1 0.012 15.4 0.1 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|302348565|ref|YP_003816203.1| - 0.0093 16.5 0.0 0.018 15.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_28 PF13521.6 gi|302348565|ref|YP_003816203.1| - 0.01 16.1 0.1 0.067 13.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 gi|302348565|ref|YP_003816203.1| - 0.012 14.9 0.3 0.054 12.8 0.0 2.0 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_5 PF07728.14 gi|302348565|ref|YP_003816203.1| - 0.013 15.5 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|302348565|ref|YP_003816203.1| - 0.015 15.2 0.0 0.099 12.6 0.0 2.4 3 0 0 3 3 3 0 NTPase RuvB_N PF05496.12 gi|302348565|ref|YP_003816203.1| - 0.016 15.0 0.0 0.23 11.2 0.0 2.5 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|302348565|ref|YP_003816203.1| - 0.018 15.5 0.0 0.047 14.1 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|302348565|ref|YP_003816203.1| - 0.022 14.1 0.0 0.054 12.8 0.0 1.6 1 0 0 1 1 1 0 KaiC PRK PF00485.18 gi|302348565|ref|YP_003816203.1| - 0.024 14.4 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|302348565|ref|YP_003816203.1| - 0.026 14.7 0.0 0.067 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|302348565|ref|YP_003816203.1| - 0.03 14.2 0.1 0.077 12.9 0.1 1.7 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|302348565|ref|YP_003816203.1| - 0.033 14.5 0.0 0.079 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|302348565|ref|YP_003816203.1| - 0.037 13.5 0.0 0.15 11.4 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_14 PF13173.6 gi|302348565|ref|YP_003816203.1| - 0.052 13.6 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|302348565|ref|YP_003816203.1| - 0.065 13.0 0.0 0.13 12.0 0.0 1.5 2 0 0 2 2 1 0 AAA domain APS_kinase PF01583.20 gi|302348565|ref|YP_003816203.1| - 0.093 12.6 0.0 1.5 8.7 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase SRP54 PF00448.22 gi|302348565|ref|YP_003816203.1| - 0.11 12.2 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF2791 PF10923.8 gi|302348565|ref|YP_003816203.1| - 0.12 11.2 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) AAA_7 PF12775.7 gi|302348565|ref|YP_003816203.1| - 0.16 11.5 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_29 PF13555.6 gi|302348565|ref|YP_003816203.1| - 0.21 11.4 0.0 0.63 9.8 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mur_ligase_M PF08245.12 gi|302348565|ref|YP_003816203.1| - 0.21 11.6 0.0 0.4 10.7 0.0 1.4 1 0 0 1 1 1 0 Mur ligase middle domain Viral_helicase1 PF01443.18 gi|302348565|ref|YP_003816203.1| - 0.21 11.3 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Sbt_1 PF05982.12 gi|302348567|ref|YP_003816205.1| - 0.0075 15.6 2.9 0.0086 15.4 2.9 1.0 1 0 0 1 1 1 1 Na+-dependent bicarbonate transporter superfamily Lys_export PF03956.13 gi|302348568|ref|YP_003816206.1| - 2.4e-40 138.1 10.8 2.7e-40 137.9 10.8 1.0 1 0 0 1 1 1 1 Lysine exporter LysO dUTPase PF00692.19 gi|302348569|ref|YP_003816207.1| - 9.5e-08 31.8 0.0 1.4e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|302348569|ref|YP_003816207.1| - 0.0042 15.9 0.0 0.48 9.2 0.0 2.2 1 1 0 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DrsE PF02635.15 gi|302348570|ref|YP_003816208.1| - 2.8e-13 50.3 0.1 3.1e-13 50.1 0.1 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|302348570|ref|YP_003816208.1| - 0.0013 18.6 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DUF2761 PF10959.8 gi|302348570|ref|YP_003816208.1| - 0.14 12.2 0.0 0.5 10.4 0.0 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF2761) Glyco_hydro_31 PF01055.26 gi|302348571|ref|YP_003816209.1| - 7.8e-103 345.0 0.0 9.5e-103 344.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|302348571|ref|YP_003816209.1| - 5e-15 55.6 1.4 6.9e-15 55.1 0.5 1.8 2 0 0 2 2 2 1 Galactose mutarotase-like Melibiase PF02065.18 gi|302348571|ref|YP_003816209.1| - 0.063 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Melibiase AA_permease_2 PF13520.6 gi|302348572|ref|YP_003816210.1| - 7.8e-43 146.9 59.0 7.8e-43 146.9 59.0 2.3 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|302348572|ref|YP_003816210.1| - 1e-27 96.9 59.8 1e-27 96.9 59.8 2.1 1 1 1 2 2 2 1 Amino acid permease Proton_antipo_N PF00662.20 gi|302348572|ref|YP_003816210.1| - 4.3 7.5 10.3 2.8 8.1 0.2 4.1 4 0 0 4 4 4 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Glycos_transf_2 PF00535.26 gi|302348573|ref|YP_003816211.1| - 8.6e-25 87.5 0.1 1.2e-24 87.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302348573|ref|YP_003816211.1| - 1.7e-05 24.8 0.0 2.1e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|302348573|ref|YP_003816211.1| - 0.0099 15.4 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_4 PF13439.6 gi|302348573|ref|YP_003816211.1| - 0.08 12.9 0.0 17 5.3 0.0 2.4 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_tranf_2_4 PF13704.6 gi|302348573|ref|YP_003816211.1| - 0.12 12.9 0.0 0.31 11.6 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 NurA PF09376.10 gi|302348574|ref|YP_003816212.1| - 0.012 15.4 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 NurA domain DUF87 PF01935.17 gi|302348575|ref|YP_003816213.1| - 1.4e-10 41.7 0.0 5.4e-10 39.8 0.0 1.9 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|302348575|ref|YP_003816213.1| - 9e-10 37.7 0.0 4.2e-05 22.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA PF00004.29 gi|302348575|ref|YP_003816213.1| - 4.9e-07 30.2 0.1 0.00093 19.6 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|302348575|ref|YP_003816213.1| - 5e-07 29.0 0.0 1e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|302348575|ref|YP_003816213.1| - 1.9e-06 28.2 0.0 0.007 16.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.18 gi|302348575|ref|YP_003816213.1| - 2.1e-06 27.3 0.4 7.5e-05 22.2 0.1 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family ResIII PF04851.15 gi|302348575|ref|YP_003816213.1| - 0.00011 22.3 0.1 0.23 11.4 0.1 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|302348575|ref|YP_003816213.1| - 0.00097 19.6 0.0 0.29 11.5 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|302348575|ref|YP_003816213.1| - 0.0047 17.4 0.0 0.011 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|302348575|ref|YP_003816213.1| - 0.0051 16.4 0.1 0.0097 15.5 0.1 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.9 gi|302348575|ref|YP_003816213.1| - 0.0064 15.8 0.0 0.82 8.8 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Zot PF05707.12 gi|302348575|ref|YP_003816213.1| - 0.0067 16.1 0.1 0.04 13.5 0.0 2.2 3 0 0 3 3 3 1 Zonular occludens toxin (Zot) AAA_10 PF12846.7 gi|302348575|ref|YP_003816213.1| - 0.007 15.3 0.0 2.8 6.8 0.0 2.4 2 0 0 2 2 2 2 AAA-like domain ABC_tran PF00005.27 gi|302348575|ref|YP_003816213.1| - 0.0077 16.7 0.0 0.019 15.5 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|302348575|ref|YP_003816213.1| - 0.011 15.4 0.1 0.025 14.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|302348575|ref|YP_003816213.1| - 0.018 14.1 0.3 0.043 12.9 0.3 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|302348575|ref|YP_003816213.1| - 0.047 13.9 0.0 0.25 11.6 0.0 2.3 3 0 0 3 3 1 0 AAA domain AAA_7 PF12775.7 gi|302348575|ref|YP_003816213.1| - 0.05 13.1 0.1 0.094 12.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|302348575|ref|YP_003816213.1| - 0.051 13.7 0.2 0.19 11.8 0.2 2.0 2 0 0 2 2 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|302348575|ref|YP_003816213.1| - 0.054 13.2 0.0 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|302348575|ref|YP_003816213.1| - 0.065 13.1 0.1 0.15 12.0 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|302348575|ref|YP_003816213.1| - 0.073 13.1 0.0 0.71 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|302348575|ref|YP_003816213.1| - 0.074 13.6 0.0 0.24 12.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|302348575|ref|YP_003816213.1| - 0.082 13.1 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase MobB PF03205.14 gi|302348575|ref|YP_003816213.1| - 0.098 12.6 0.1 0.24 11.3 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TsaE PF02367.17 gi|302348575|ref|YP_003816213.1| - 0.13 12.3 0.1 0.25 11.3 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|302348575|ref|YP_003816213.1| - 0.13 12.4 0.0 0.55 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|302348575|ref|YP_003816213.1| - 0.17 11.6 0.3 1.1 8.9 0.0 2.3 3 0 0 3 3 2 0 Holliday junction DNA helicase RuvB P-loop domain SRP54 PF00448.22 gi|302348575|ref|YP_003816213.1| - 0.2 11.3 0.1 0.4 10.3 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Arf PF00025.21 gi|302348575|ref|YP_003816213.1| - 0.2 11.1 0.1 0.38 10.2 0.1 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_30 PF13604.6 gi|302348575|ref|YP_003816213.1| - 0.22 11.2 0.3 0.69 9.6 0.1 1.9 2 0 0 2 2 1 0 AAA domain OrfB_IS605 PF01385.19 gi|302348576|ref|YP_003816214.1| - 0.0014 18.8 0.0 0.0014 18.8 0.0 1.1 1 0 0 1 1 1 1 Probable transposase DUF2170 PF09938.9 gi|302348577|ref|YP_003816215.1| - 0.082 12.6 0.1 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2170) Cob_adeno_trans PF01923.18 gi|302348578|ref|YP_003816216.1| - 7.7e-44 149.7 0.0 8.7e-44 149.5 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Rnk_N PF14760.6 gi|302348578|ref|YP_003816216.1| - 0.034 14.6 0.0 0.092 13.2 0.0 1.8 1 0 0 1 1 1 0 Rnk N-terminus Aldedh PF00171.22 gi|302348579|ref|YP_003816217.1| - 8.8e-40 136.6 0.0 1.2e-39 136.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family PCNA_N PF00705.18 gi|302348580|ref|YP_003816218.1| - 1.9e-12 47.0 0.0 4.4e-12 45.8 0.0 1.6 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|302348580|ref|YP_003816218.1| - 1.1e-05 25.5 0.4 0.0011 19.1 0.0 2.5 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.12 gi|302348580|ref|YP_003816218.1| - 0.023 13.8 0.3 0.43 9.6 0.0 2.1 2 0 0 2 2 2 0 Hus1-like protein Rad9 PF04139.13 gi|302348580|ref|YP_003816218.1| - 0.032 13.7 0.0 0.07 12.6 0.0 1.6 2 0 0 2 2 2 0 Rad9 UbiA PF01040.18 gi|302348581|ref|YP_003816219.1| - 1.8e-37 129.1 14.8 2.3e-37 128.7 14.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family TauE PF01925.19 gi|302348582|ref|YP_003816220.1| - 2.7e-34 118.8 37.0 3.5e-34 118.5 37.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Phage_holin_2_1 PF04971.12 gi|302348582|ref|YP_003816220.1| - 0.15 12.1 0.0 0.15 12.1 0.0 3.4 4 0 0 4 4 4 0 Bacteriophage P21 holin S Transport_MerF PF11431.8 gi|302348582|ref|YP_003816220.1| - 2.9 7.8 7.9 0.91 9.5 0.3 3.6 3 0 0 3 3 3 0 Membrane transport protein MerF MTHFR PF02219.17 gi|302348583|ref|YP_003816221.1| - 0.0039 16.6 0.0 0.0079 15.6 0.0 1.4 1 1 1 2 2 2 1 Methylenetetrahydrofolate reductase MFS_1 PF07690.16 gi|302348584|ref|YP_003816222.1| - 7.8e-12 44.8 38.7 9.7e-12 44.5 38.3 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily DHDPS PF00701.22 gi|302348585|ref|YP_003816223.1| - 3.7e-57 193.2 0.0 4.2e-57 193.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family NTP_transf_9 PF04248.12 gi|302348586|ref|YP_003816224.1| - 0.069 13.0 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF427) GalKase_gal_bdg PF10509.9 gi|302348587|ref|YP_003816225.1| - 3.4e-16 58.5 0.0 8.3e-16 57.3 0.0 1.7 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_N PF00288.26 gi|302348587|ref|YP_003816225.1| - 1.5e-12 47.5 0.5 5e-12 45.9 0.5 1.9 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|302348587|ref|YP_003816225.1| - 1.7e-12 47.5 0.1 5.8e-12 45.8 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GalP_UDP_transf PF01087.22 gi|302348588|ref|YP_003816226.1| - 3.7e-23 82.9 0.0 1.6e-22 80.8 0.0 1.9 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|302348588|ref|YP_003816226.1| - 6.6e-15 55.2 0.0 1e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.23 gi|302348588|ref|YP_003816226.1| - 0.0019 18.9 0.0 0.041 14.6 0.0 2.2 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|302348588|ref|YP_003816226.1| - 0.0037 17.7 0.0 0.029 14.9 0.0 2.0 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding DUF4921 PF16268.5 gi|302348588|ref|YP_003816226.1| - 0.047 12.5 0.0 0.067 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4921) Acylphosphatase PF00708.18 gi|302348590|ref|YP_003816228.1| - 3.3e-24 85.1 0.1 3.7e-24 84.9 0.1 1.1 1 0 0 1 1 1 1 Acylphosphatase NIL PF09383.10 gi|302348590|ref|YP_003816228.1| - 0.077 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 NIL domain DUF3970 PF13113.6 gi|302348590|ref|YP_003816228.1| - 0.16 12.2 0.1 0.16 12.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3970) AIRS_C PF02769.22 gi|302348591|ref|YP_003816229.1| - 2.3e-08 34.3 0.0 1e-07 32.2 0.0 2.2 2 1 0 2 2 2 1 AIR synthase related protein, C-terminal domain PALP PF00291.25 gi|302348592|ref|YP_003816230.1| - 1.4e-52 179.0 0.0 2.4e-52 178.2 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Metallophos PF00149.28 gi|302348593|ref|YP_003816231.1| - 2.7e-20 73.8 0.1 3.3e-20 73.5 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|302348593|ref|YP_003816231.1| - 0.0028 17.9 0.0 0.004 17.4 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain FBPase_2 PF06874.11 gi|302348593|ref|YP_003816231.1| - 0.1 10.9 0.0 0.17 10.2 0.0 1.3 1 0 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase Glycos_transf_2 PF00535.26 gi|302348594|ref|YP_003816232.1| - 2.3e-06 27.5 0.0 3.4e-06 27.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|302348594|ref|YP_003816232.1| - 0.00015 21.7 0.0 0.00065 19.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|302348594|ref|YP_003816232.1| - 0.052 13.0 0.0 0.079 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_transf_20 PF00982.21 gi|302348595|ref|YP_003816233.1| - 6.1e-162 539.6 0.0 7.5e-162 539.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.16 gi|302348595|ref|YP_003816233.1| - 5.1e-46 156.7 0.0 7.5e-46 156.1 0.0 1.2 1 0 0 1 1 1 1 Trehalose-phosphatase Glycos_transf_1 PF00534.20 gi|302348595|ref|YP_003816233.1| - 0.00027 20.5 0.0 0.0022 17.6 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Hydrolase_3 PF08282.12 gi|302348595|ref|YP_003816233.1| - 0.0013 18.6 0.0 0.0033 17.2 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_SAK_2 PF18143.1 gi|302348595|ref|YP_003816233.1| - 0.0076 16.6 0.0 0.026 14.8 0.0 1.9 1 1 0 2 2 2 1 HAD domain in Swiss Army Knife RNA repair proteins Glyco_trans_1_4 PF13692.6 gi|302348595|ref|YP_003816233.1| - 0.012 16.1 0.0 0.028 14.8 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 S6PP PF05116.13 gi|302348595|ref|YP_003816233.1| - 0.04 13.4 0.0 6 6.3 0.0 2.5 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Glyco_transf_5 PF08323.11 gi|302348595|ref|YP_003816233.1| - 0.043 13.5 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Starch synthase catalytic domain Amidase PF01425.21 gi|302348596|ref|YP_003816234.1| - 1.6e-90 304.3 2.0 2e-88 297.3 2.0 2.1 1 1 0 1 1 1 1 Amidase Peripla_BP_6 PF13458.6 gi|302348597|ref|YP_003816235.1| - 3.1e-33 115.9 0.9 4.9e-33 115.2 0.9 1.3 1 1 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|302348597|ref|YP_003816235.1| - 3.4e-05 23.0 1.6 4.9e-05 22.5 0.8 1.6 2 0 0 2 2 2 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|302348597|ref|YP_003816235.1| - 5.4e-05 22.5 0.3 0.00011 21.5 0.3 1.4 1 0 0 1 1 1 1 Receptor family ligand binding region DUF3149 PF11346.8 gi|302348597|ref|YP_003816235.1| - 0.25 11.0 1.0 0.52 10.0 1.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) BPD_transp_2 PF02653.16 gi|302348598|ref|YP_003816236.1| - 4.2e-30 104.8 47.9 5.3e-30 104.5 47.9 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ISK_Channel PF02060.15 gi|302348598|ref|YP_003816236.1| - 4.6 7.0 5.5 0.51 10.1 0.5 2.0 2 0 0 2 2 2 0 Slow voltage-gated potassium channel BPD_transp_2 PF02653.16 gi|302348599|ref|YP_003816237.1| - 1.8e-33 115.8 44.8 1.8e-33 115.8 44.8 1.3 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|302348600|ref|YP_003816238.1| - 2.3e-28 99.4 0.0 2.9e-28 99.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302348600|ref|YP_003816238.1| - 3.9e-12 46.6 0.6 4.4e-07 30.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|302348600|ref|YP_003816238.1| - 4.7e-05 22.9 0.2 0.00022 20.7 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|302348600|ref|YP_003816238.1| - 0.00082 19.9 0.0 0.001 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|302348600|ref|YP_003816238.1| - 0.0075 15.9 0.4 0.012 15.3 0.4 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|302348600|ref|YP_003816238.1| - 0.011 15.5 0.3 0.02 14.6 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|302348600|ref|YP_003816238.1| - 0.015 14.9 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|302348600|ref|YP_003816238.1| - 0.029 13.8 0.4 0.12 11.8 0.1 1.9 1 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI Arf PF00025.21 gi|302348600|ref|YP_003816238.1| - 0.032 13.7 0.2 0.046 13.2 0.2 1.2 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_30 PF13604.6 gi|302348600|ref|YP_003816238.1| - 0.056 13.1 1.2 0.078 12.7 1.2 1.5 1 1 0 1 1 1 0 AAA domain DUF853 PF05872.12 gi|302348600|ref|YP_003816238.1| - 0.08 11.5 1.2 5.5 5.5 0.5 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) DUF2813 PF11398.8 gi|302348600|ref|YP_003816238.1| - 0.086 12.1 0.0 2.7 7.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) AAA PF00004.29 gi|302348600|ref|YP_003816238.1| - 0.11 13.0 0.7 0.87 10.0 0.7 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|302348600|ref|YP_003816238.1| - 0.12 12.7 0.4 0.2 12.1 0.1 1.7 2 1 0 2 2 2 0 AAA ATPase domain Thymidylate_kin PF02223.17 gi|302348600|ref|YP_003816238.1| - 0.18 11.5 0.1 0.31 10.7 0.1 1.4 1 0 0 1 1 1 0 Thymidylate kinase DUF3584 PF12128.8 gi|302348600|ref|YP_003816238.1| - 0.66 7.4 2.5 0.91 7.0 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.27 gi|302348601|ref|YP_003816239.1| - 1.1e-21 77.8 0.0 1.4e-21 77.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|302348601|ref|YP_003816239.1| - 9.7e-07 28.6 0.1 1.8e-06 27.7 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_30 PF13604.6 gi|302348601|ref|YP_003816239.1| - 0.00011 22.0 0.1 0.046 13.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|302348601|ref|YP_003816239.1| - 0.00034 21.2 0.0 0.00057 20.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|302348601|ref|YP_003816239.1| - 0.00043 20.0 0.0 0.00095 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|302348601|ref|YP_003816239.1| - 0.00067 20.1 0.2 0.01 16.3 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|302348601|ref|YP_003816239.1| - 0.0019 18.5 0.0 0.014 15.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|302348601|ref|YP_003816239.1| - 0.002 17.6 0.1 0.21 11.0 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|302348601|ref|YP_003816239.1| - 0.0031 17.4 0.0 0.051 13.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|302348601|ref|YP_003816239.1| - 0.0044 17.4 0.1 0.011 16.2 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|302348601|ref|YP_003816239.1| - 0.0078 16.1 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_14 PF13173.6 gi|302348601|ref|YP_003816239.1| - 0.02 14.9 0.0 5 7.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain MukB PF04310.12 gi|302348601|ref|YP_003816239.1| - 0.025 14.4 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal TsaE PF02367.17 gi|302348601|ref|YP_003816239.1| - 0.03 14.3 0.0 0.092 12.7 0.0 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|302348601|ref|YP_003816239.1| - 0.034 14.1 0.3 1.5 8.7 0.1 2.7 2 1 0 3 3 3 0 NTPase AAA_33 PF13671.6 gi|302348601|ref|YP_003816239.1| - 0.052 13.7 0.0 0.068 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|302348601|ref|YP_003816239.1| - 0.092 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|302348601|ref|YP_003816239.1| - 0.12 12.0 0.0 0.37 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|302348601|ref|YP_003816239.1| - 0.12 12.1 0.1 0.33 10.6 0.0 1.8 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|302348601|ref|YP_003816239.1| - 0.14 11.9 0.2 7.4 6.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Asparaginase_2 PF01112.18 gi|302348602|ref|YP_003816240.1| - 4.1e-75 252.6 3.1 5e-75 252.4 3.1 1.0 1 0 0 1 1 1 1 Asparaginase SBP_bac_5 PF00496.22 gi|302348603|ref|YP_003816241.1| - 3.5e-45 154.6 2.3 7.6e-45 153.5 2.3 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MHC_I PF00129.18 gi|302348603|ref|YP_003816241.1| - 0.058 13.0 0.3 0.11 12.0 0.3 1.4 1 0 0 1 1 1 0 Class I Histocompatibility antigen, domains alpha 1 and 2 SpoIIIAH PF12685.7 gi|302348603|ref|YP_003816241.1| - 0.067 13.0 0.4 0.13 12.1 0.4 1.4 1 0 0 1 1 1 0 SpoIIIAH-like protein DUF3357 PF11837.8 gi|302348603|ref|YP_003816241.1| - 0.15 12.5 0.3 0.27 11.7 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) Shisa PF13908.6 gi|302348603|ref|YP_003816241.1| - 1.1 9.5 7.0 2.5 8.3 7.0 1.5 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator BPD_transp_1 PF00528.22 gi|302348604|ref|YP_003816242.1| - 1.2e-33 116.4 11.0 1.2e-33 116.4 11.0 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|302348605|ref|YP_003816243.1| - 2.1e-25 89.6 18.6 2.1e-25 89.6 18.6 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|302348605|ref|YP_003816243.1| - 0.00094 19.1 1.8 0.00094 19.1 1.8 3.9 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C SpoVAB PF13782.6 gi|302348605|ref|YP_003816243.1| - 0.0068 16.7 4.4 0.013 15.8 1.1 2.5 2 0 0 2 2 2 1 Stage V sporulation protein AB PIG-P PF08510.12 gi|302348605|ref|YP_003816243.1| - 0.0069 16.3 3.6 0.0089 15.9 1.2 2.3 2 0 0 2 2 2 1 PIG-P ABC_tran PF00005.27 gi|302348606|ref|YP_003816244.1| - 6.5e-24 85.0 0.0 1.2e-22 80.9 0.0 2.4 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|302348606|ref|YP_003816244.1| - 4e-22 78.5 0.2 7.3e-22 77.7 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|302348606|ref|YP_003816244.1| - 2.4e-07 30.9 0.1 1.6e-06 28.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|302348606|ref|YP_003816244.1| - 1.2e-05 24.9 0.5 6.8e-05 22.4 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|302348606|ref|YP_003816244.1| - 0.0053 17.3 0.0 0.063 13.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain PRK PF00485.18 gi|302348606|ref|YP_003816244.1| - 0.015 15.0 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|302348606|ref|YP_003816244.1| - 0.064 13.6 0.1 0.15 12.5 0.0 1.7 2 1 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|302348606|ref|YP_003816244.1| - 0.11 12.0 0.0 2.2 7.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|302348606|ref|YP_003816244.1| - 0.14 12.4 0.0 4.2 7.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|302348607|ref|YP_003816245.1| - 9.3e-33 113.6 0.0 2.2e-32 112.4 0.0 1.7 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|302348607|ref|YP_003816245.1| - 4.4e-19 68.8 0.0 8.7e-19 67.8 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|302348607|ref|YP_003816245.1| - 1.8e-08 34.6 0.2 0.00012 22.0 0.0 2.7 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|302348607|ref|YP_003816245.1| - 3.5e-06 27.3 0.8 0.00046 20.5 0.2 2.6 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|302348607|ref|YP_003816245.1| - 4.8e-06 26.2 0.2 0.00024 20.6 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|302348607|ref|YP_003816245.1| - 0.00087 19.7 0.1 0.0018 18.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|302348607|ref|YP_003816245.1| - 0.0031 17.1 0.0 0.95 9.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|302348607|ref|YP_003816245.1| - 0.0034 17.1 0.0 0.0062 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|302348607|ref|YP_003816245.1| - 0.007 15.1 0.0 0.22 10.1 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_5 PF07728.14 gi|302348607|ref|YP_003816245.1| - 0.018 15.0 0.1 0.55 10.2 0.0 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|302348607|ref|YP_003816245.1| - 0.058 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase G-alpha PF00503.20 gi|302348607|ref|YP_003816245.1| - 0.059 12.5 0.0 0.068 12.3 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|302348607|ref|YP_003816245.1| - 0.062 13.8 0.0 0.2 12.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|302348607|ref|YP_003816245.1| - 0.11 12.1 0.1 2.3 7.9 0.0 2.6 3 0 0 3 3 3 0 AAA domain DUF3987 PF13148.6 gi|302348607|ref|YP_003816245.1| - 0.13 11.2 0.0 0.22 10.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Adeno_IVa2 PF02456.15 gi|302348607|ref|YP_003816245.1| - 0.13 11.0 0.0 0.33 9.7 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein SbcCD_C PF13558.6 gi|302348607|ref|YP_003816245.1| - 0.15 12.4 0.1 0.68 10.2 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|302348607|ref|YP_003816245.1| - 0.15 11.7 0.0 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|302348607|ref|YP_003816245.1| - 0.18 11.9 0.0 0.38 10.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain NAD_kinase PF01513.21 gi|302348608|ref|YP_003816246.1| - 1e-53 182.5 0.0 1.1e-53 182.3 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|302348608|ref|YP_003816246.1| - 9.5e-06 25.3 0.2 2.6e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.22 gi|302348608|ref|YP_003816246.1| - 0.068 13.1 0.0 0.18 11.8 0.0 1.8 1 0 0 1 1 1 0 DeoR C terminal sensor domain DUF5499 PF17603.2 gi|302348608|ref|YP_003816246.1| - 0.12 12.9 0.1 3.6 8.2 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5499) NTP_transf_2 PF01909.23 gi|302348610|ref|YP_003816248.1| - 5.6e-08 33.0 0.0 1e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|302348610|ref|YP_003816248.1| - 4.9e-05 23.3 0.0 8.2e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DMRL_synthase PF00885.19 gi|302348611|ref|YP_003816249.1| - 4.1e-34 117.4 0.1 4.6e-34 117.3 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF1404 PF07185.11 gi|302348611|ref|YP_003816249.1| - 0.17 11.6 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1404) GCH_III PF05165.12 gi|302348612|ref|YP_003816250.1| - 8.7e-43 146.4 0.0 1.4e-42 145.7 0.0 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase III DUF2299 PF10061.9 gi|302348614|ref|YP_003816252.1| - 1.4e-38 131.7 0.1 1.6e-38 131.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) IF-2B PF01008.17 gi|302348615|ref|YP_003816253.1| - 7.7e-80 268.1 0.0 9.1e-80 267.9 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Iso_dh PF00180.20 gi|302348616|ref|YP_003816254.1| - 9.7e-94 314.4 0.0 1.2e-93 314.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Tox-SGS PF15651.6 gi|302348616|ref|YP_003816254.1| - 0.15 12.3 0.0 0.27 11.5 0.0 1.3 1 0 0 1 1 1 0 Salivary glad secreted protein domain toxin HAD PF12710.7 gi|302348617|ref|YP_003816255.1| - 3.9e-12 46.9 0.1 4.9e-12 46.6 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|302348617|ref|YP_003816255.1| - 1.2e-09 38.8 0.0 8.5e-08 32.7 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|302348617|ref|YP_003816255.1| - 4e-08 33.3 0.0 6.4e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|302348617|ref|YP_003816255.1| - 0.00093 19.3 0.0 0.052 13.6 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF123 PF01986.16 gi|302348618|ref|YP_003816256.1| - 9.1e-13 48.5 0.0 1.2e-12 48.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Thioredoxin PF00085.20 gi|302348619|ref|YP_003816257.1| - 0.017 15.1 0.5 0.046 13.7 0.5 1.7 1 1 0 1 1 1 0 Thioredoxin DUF981 PF06168.11 gi|302348620|ref|YP_003816258.1| - 2e-55 187.6 21.9 2.3e-55 187.5 21.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) Phage_holin_4_2 PF04020.13 gi|302348620|ref|YP_003816258.1| - 3.8 8.2 13.5 25 5.6 2.4 2.3 1 1 1 2 2 2 0 Mycobacterial 4 TMS phage holin, superfamily IV AAA_26 PF13500.6 gi|302348621|ref|YP_003816259.1| - 0.0089 15.9 0.3 0.39 10.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|302348621|ref|YP_003816259.1| - 0.14 12.2 0.2 1 9.5 0.1 2.0 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain RTC PF01137.21 gi|302348622|ref|YP_003816260.1| - 6.9e-75 251.0 0.1 8.5e-75 250.8 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|302348622|ref|YP_003816260.1| - 1.3e-23 83.5 0.1 2.6e-23 82.5 0.1 1.6 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Glyco_hydro_57 PF03065.15 gi|302348624|ref|YP_003816262.1| - 3.6e-42 144.7 0.1 2.6e-33 115.6 0.0 2.3 1 1 1 2 2 2 2 Glycosyl hydrolase family 57 CARDB PF07705.11 gi|302348624|ref|YP_003816262.1| - 0.00079 19.7 0.9 0.0027 17.9 0.9 1.9 1 0 0 1 1 1 1 CARDB CD34_antigen PF06365.12 gi|302348624|ref|YP_003816262.1| - 0.058 13.0 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 CD34/Podocalyxin family DUF11 PF01345.18 gi|302348624|ref|YP_003816262.1| - 0.42 11.0 3.9 0.36 11.2 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF11 SAM_adeno_trans PF01887.16 gi|302348625|ref|YP_003816263.1| - 1.5e-69 234.1 0.1 1.6e-69 233.9 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DAO PF01266.24 gi|302348626|ref|YP_003816264.1| - 4.5e-35 121.9 1.0 5.3e-35 121.6 1.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|302348626|ref|YP_003816264.1| - 1.1e-06 28.8 0.3 2.4e-06 27.7 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|302348626|ref|YP_003816264.1| - 0.0036 16.4 0.2 0.0052 15.9 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|302348626|ref|YP_003816264.1| - 0.0058 15.9 0.3 0.011 15.0 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|302348626|ref|YP_003816264.1| - 0.047 12.9 0.4 0.074 12.3 0.4 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.27 gi|302348626|ref|YP_003816264.1| - 0.064 13.8 1.2 0.1 13.2 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|302348626|ref|YP_003816264.1| - 0.15 10.8 0.0 0.21 10.3 0.0 1.1 1 0 0 1 1 1 0 HI0933-like protein 3HCDH_N PF02737.18 gi|302348626|ref|YP_003816264.1| - 0.26 11.2 0.1 0.38 10.6 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|302348626|ref|YP_003816264.1| - 0.27 10.5 0.0 0.42 9.8 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Aminotran_1_2 PF00155.21 gi|302348627|ref|YP_003816265.1| - 1.6e-68 231.5 0.0 1.8e-68 231.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|302348627|ref|YP_003816265.1| - 5.2e-09 35.5 0.0 1.2e-08 34.3 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|302348627|ref|YP_003816265.1| - 1.8e-07 30.8 0.0 3.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|302348627|ref|YP_003816265.1| - 5.5e-05 21.9 0.0 8.6e-05 21.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|302348627|ref|YP_003816265.1| - 0.1 11.9 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase VWA PF00092.28 gi|302348627|ref|YP_003816265.1| - 0.19 12.0 0.0 0.58 10.4 0.0 1.9 1 1 0 1 1 1 0 von Willebrand factor type A domain CutA1 PF03091.15 gi|302348629|ref|YP_003816267.1| - 2.9e-33 113.6 0.0 3.4e-33 113.4 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein TF_Zn_Ribbon PF08271.12 gi|302348630|ref|YP_003816268.1| - 0.029 13.9 0.2 0.14 11.7 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding GAGA PF09237.11 gi|302348630|ref|YP_003816268.1| - 0.039 13.7 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 GAGA factor T6SS-SciN PF12790.7 gi|302348630|ref|YP_003816268.1| - 0.14 11.9 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 Zn_Tnp_IS1595 PF12760.7 gi|302348630|ref|YP_003816268.1| - 0.19 11.7 1.2 0.48 10.4 1.1 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF4379 PF14311.6 gi|302348630|ref|YP_003816268.1| - 0.27 11.6 1.2 1.3 9.5 0.0 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|302348630|ref|YP_003816268.1| - 6.3 6.9 8.3 7 6.8 5.0 2.6 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Enolase_C PF00113.22 gi|302348631|ref|YP_003816269.1| - 8.5e-108 360.1 0.0 1.1e-107 359.7 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|302348631|ref|YP_003816269.1| - 8.6e-43 145.7 0.2 1.5e-42 144.8 0.2 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|302348631|ref|YP_003816269.1| - 4e-09 36.4 0.0 1e-08 35.1 0.0 1.7 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|302348631|ref|YP_003816269.1| - 0.15 11.1 0.0 0.34 10.0 0.0 1.5 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus AdoHcyase PF05221.17 gi|302348632|ref|YP_003816270.1| - 2.4e-66 223.9 0.0 2.9e-38 131.7 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|302348632|ref|YP_003816270.1| - 7.8e-59 198.4 0.2 2.3e-58 196.9 0.1 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|302348632|ref|YP_003816270.1| - 2.2e-09 36.9 0.1 5e-09 35.8 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|302348632|ref|YP_003816270.1| - 2.1e-08 33.9 0.1 4.5e-08 32.8 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain HTH_11 PF08279.12 gi|302348632|ref|YP_003816270.1| - 0.14 12.1 0.1 2.4 8.2 0.0 2.5 2 0 0 2 2 2 0 HTH domain AlaDh_PNT_C PF01262.21 gi|302348632|ref|YP_003816270.1| - 0.34 10.2 2.7 1.1 8.5 2.7 1.9 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Peptidase_M50 PF02163.22 gi|302348633|ref|YP_003816271.1| - 5e-09 35.8 12.9 1.3e-08 34.4 12.9 1.6 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|302348633|ref|YP_003816271.1| - 7.6e-08 32.6 0.0 1.4e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|302348633|ref|YP_003816271.1| - 2e-07 30.8 0.2 3.8e-07 29.8 0.2 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|302348633|ref|YP_003816271.1| - 1.6e-05 25.2 0.1 3e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 PDZ domain GRASP55_65 PF04495.14 gi|302348633|ref|YP_003816271.1| - 0.071 13.4 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain Metallophos_2 PF12850.7 gi|302348634|ref|YP_003816272.1| - 2.2e-27 96.3 0.0 2.5e-27 96.1 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|302348634|ref|YP_003816272.1| - 0.00039 21.0 0.2 0.013 16.0 0.0 2.1 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Prok-JAB PF14464.6 gi|302348635|ref|YP_003816273.1| - 8.9e-11 41.6 0.0 1e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|302348635|ref|YP_003816273.1| - 0.076 13.0 0.0 0.097 12.6 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain SBP_bac_11 PF13531.6 gi|302348636|ref|YP_003816274.1| - 1.1e-06 28.6 0.0 1.4e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Acetyltransf_10 PF13673.7 gi|302348636|ref|YP_003816274.1| - 0.04 13.9 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain zf-CDGSH PF09360.10 gi|302348637|ref|YP_003816275.1| - 3.2e-10 40.0 0.6 9.2e-10 38.6 0.5 1.8 2 0 0 2 2 2 1 Iron-binding zinc finger CDGSH type STAR_dimer PF16544.5 gi|302348638|ref|YP_003816276.1| - 0.081 12.5 0.5 0.081 12.5 0.5 1.7 2 0 0 2 2 2 0 Homodimerisation region of STAR domain protein Lge1 PF11488.8 gi|302348638|ref|YP_003816276.1| - 0.14 12.4 0.1 0.28 11.4 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulatory protein LGE1 adh_short_C2 PF13561.6 gi|302348639|ref|YP_003816277.1| - 1.5e-44 152.3 0.0 2.5e-44 151.6 0.0 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|302348639|ref|YP_003816277.1| - 4.6e-33 114.3 0.0 6e-33 114.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|302348639|ref|YP_003816277.1| - 2.3e-05 24.4 0.1 0.00012 22.1 0.0 1.8 2 0 0 2 2 2 1 KR domain DUF1776 PF08643.10 gi|302348639|ref|YP_003816277.1| - 0.0047 16.4 0.0 0.0068 15.8 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) 3HCDH_N PF02737.18 gi|302348639|ref|YP_003816277.1| - 0.059 13.2 0.1 0.27 11.1 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Carb_kinase PF01256.17 gi|302348642|ref|YP_003816280.1| - 1.3e-44 152.5 0.4 2e-44 151.9 0.4 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|302348642|ref|YP_003816280.1| - 9.8e-42 142.7 0.3 2.1e-41 141.6 0.3 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.12 gi|302348642|ref|YP_003816280.1| - 0.00023 20.6 0.0 0.00053 19.5 0.0 1.6 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase 3HCDH_RFF PF18321.1 gi|302348642|ref|YP_003816280.1| - 0.023 15.2 0.6 0.96 9.9 0.0 3.2 3 0 0 3 3 3 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Cecropin PF00272.19 gi|302348642|ref|YP_003816280.1| - 0.06 13.1 0.3 0.64 9.8 0.0 2.7 2 0 0 2 2 2 0 Cecropin family MFS_1 PF07690.16 gi|302348644|ref|YP_003816282.1| - 9.3e-22 77.4 33.7 9.3e-22 77.4 33.7 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily LacY_symp PF01306.19 gi|302348644|ref|YP_003816282.1| - 0.24 10.1 11.6 0.0048 15.7 4.2 1.9 2 1 1 3 3 3 0 LacY proton/sugar symporter MFS_3 PF05977.13 gi|302348644|ref|YP_003816282.1| - 0.97 7.7 13.2 2.1 6.7 13.2 1.5 1 1 0 1 1 1 0 Transmembrane secretion effector Jiraiya PF15038.6 gi|302348644|ref|YP_003816282.1| - 1 8.8 10.4 3.3 7.1 1.0 3.5 3 0 0 3 3 3 0 Jiraiya MFS_1 PF07690.16 gi|302348645|ref|YP_003816283.1| - 1.8e-24 86.4 53.4 3.2e-18 65.8 31.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|302348645|ref|YP_003816283.1| - 0.0002 20.3 25.7 0.0061 15.5 9.1 2.4 1 1 0 2 2 2 2 Sugar (and other) transporter Isochorismatase PF00857.20 gi|302348646|ref|YP_003816284.1| - 2.7e-48 164.4 0.0 3e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family PAP2 PF01569.21 gi|302348648|ref|YP_003816286.1| - 0.0088 15.8 11.1 0.023 14.5 11.1 2.1 1 1 0 1 1 1 1 PAP2 superfamily UbiA PF01040.18 gi|302348649|ref|YP_003816287.1| - 1.6e-24 86.6 20.1 2.2e-24 86.1 20.1 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF5362 PF17319.2 gi|302348650|ref|YP_003816288.1| - 4.5 7.2 13.9 0.05 13.4 3.5 2.5 3 0 0 3 3 3 0 Family of unknown function (DUF5362) YtpI PF14007.6 gi|302348650|ref|YP_003816288.1| - 5.8 7.1 13.7 0.31 11.2 5.7 2.5 2 1 0 2 2 2 0 YtpI-like protein 2-oxoacid_dh PF00198.23 gi|302348651|ref|YP_003816289.1| - 7.7e-21 74.6 0.0 1.1e-20 74.1 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DUF2258 PF10015.9 gi|302348652|ref|YP_003816290.1| - 1.5e-29 101.9 0.2 3.7e-29 100.7 0.2 1.7 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) Peripla_BP_6 PF13458.6 gi|302348653|ref|YP_003816291.1| - 3.9e-26 92.5 3.0 5.1e-26 92.2 3.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|302348653|ref|YP_003816291.1| - 0.00066 18.8 1.5 0.0058 15.7 0.8 2.0 2 0 0 2 2 2 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|302348653|ref|YP_003816291.1| - 0.00072 18.7 1.4 0.00096 18.3 1.3 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region ATPase PF06745.13 gi|302348654|ref|YP_003816292.1| - 2.1e-50 171.3 0.0 3.1e-50 170.7 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|302348654|ref|YP_003816292.1| - 7.5e-08 32.2 0.0 1.7e-07 31.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|302348654|ref|YP_003816292.1| - 6.8e-05 21.7 0.1 0.00098 17.9 0.1 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_16 PF13191.6 gi|302348654|ref|YP_003816292.1| - 0.00031 21.2 0.0 0.00052 20.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain DnaB_C PF03796.15 gi|302348654|ref|YP_003816292.1| - 0.0016 17.9 0.0 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|302348654|ref|YP_003816292.1| - 0.0017 18.1 0.0 0.005 16.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|302348654|ref|YP_003816292.1| - 0.0025 18.1 0.0 0.0066 16.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|302348654|ref|YP_003816292.1| - 0.0031 18.1 0.0 0.011 16.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|302348654|ref|YP_003816292.1| - 0.0066 15.7 0.0 0.0088 15.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|302348654|ref|YP_003816292.1| - 0.0074 16.3 0.0 0.018 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|302348654|ref|YP_003816292.1| - 0.0092 15.3 0.1 0.018 14.4 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.12 gi|302348654|ref|YP_003816292.1| - 0.0096 15.8 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.17 gi|302348654|ref|YP_003816292.1| - 0.028 14.1 0.0 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein RuvB_N PF05496.12 gi|302348654|ref|YP_003816292.1| - 0.034 13.9 0.0 2.7 7.7 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|302348654|ref|YP_003816292.1| - 0.073 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|302348654|ref|YP_003816292.1| - 0.1 13.1 0.3 0.24 11.9 0.1 1.7 2 0 0 2 2 1 0 ABC transporter AAA PF00004.29 gi|302348654|ref|YP_003816292.1| - 0.11 13.0 0.1 0.29 11.5 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|302348654|ref|YP_003816292.1| - 0.18 11.4 0.0 0.33 10.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CobA_CobO_BtuR PF02572.15 gi|302348654|ref|YP_003816292.1| - 0.18 12.0 0.0 1.7 8.9 0.0 2.4 3 0 0 3 3 3 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Na_Ca_ex PF01699.24 gi|302348655|ref|YP_003816293.1| - 3.8e-16 59.4 23.1 3e-09 37.0 6.1 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF2070 PF09843.9 gi|302348655|ref|YP_003816293.1| - 7.3 4.8 8.2 2 6.6 5.0 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) SBP_bac_1 PF01547.25 gi|302348656|ref|YP_003816294.1| - 0.0036 17.3 0.0 0.0045 17.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Sigma_reg_N PF13800.6 gi|302348656|ref|YP_003816294.1| - 0.0088 16.3 0.6 0.012 15.8 0.6 1.3 1 0 0 1 1 1 1 Sigma factor regulator N-terminal SP_C-Propep PF08999.10 gi|302348656|ref|YP_003816294.1| - 0.051 13.4 0.1 0.06 13.1 0.1 1.2 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide OppC_N PF12911.7 gi|302348656|ref|YP_003816294.1| - 0.25 11.3 0.5 0.33 10.9 0.5 1.3 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DUF2897 PF11446.8 gi|302348656|ref|YP_003816294.1| - 0.72 9.8 5.0 89 3.1 7.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2897) IMPDH PF00478.25 gi|302348657|ref|YP_003816295.1| - 2.3e-102 342.5 0.4 2.8e-102 342.3 0.4 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|302348657|ref|YP_003816295.1| - 2.1e-07 30.3 3.7 4.1e-07 29.4 3.7 1.5 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|302348657|ref|YP_003816295.1| - 3.9e-07 29.8 4.4 2.5e-05 23.8 3.7 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase DHO_dh PF01180.21 gi|302348657|ref|YP_003816295.1| - 7.8e-06 25.3 1.2 1.4e-05 24.5 1.2 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.17 gi|302348657|ref|YP_003816295.1| - 2.7e-05 23.5 4.0 4.2e-05 22.9 4.0 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase BKACE PF05853.12 gi|302348657|ref|YP_003816295.1| - 0.0055 16.1 0.2 0.0098 15.2 0.2 1.4 1 0 0 1 1 1 1 beta-keto acid cleavage enzyme ThiG PF05690.14 gi|302348657|ref|YP_003816295.1| - 0.0056 16.0 0.8 0.013 14.8 0.8 1.5 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|302348657|ref|YP_003816295.1| - 0.015 14.7 0.0 0.033 13.6 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein GATase PF00117.28 gi|302348658|ref|YP_003816296.1| - 2.2e-36 125.5 0.0 3.3e-36 124.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.22 gi|302348658|ref|YP_003816296.1| - 1.8e-34 117.6 0.0 4.2e-34 116.5 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|302348658|ref|YP_003816296.1| - 5.7e-11 42.0 0.1 2.8e-06 26.7 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.13 gi|302348658|ref|YP_003816296.1| - 1.4e-09 38.0 0.1 8.7e-09 35.4 0.1 2.1 1 1 0 1 1 1 1 Peptidase C26 QueC PF06508.13 gi|302348658|ref|YP_003816296.1| - 7.1e-05 22.4 0.0 0.0026 17.3 0.0 2.4 3 0 0 3 3 3 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|302348658|ref|YP_003816296.1| - 0.0016 18.3 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|302348658|ref|YP_003816296.1| - 0.027 13.3 0.1 0.12 11.1 0.1 1.8 2 0 0 2 2 2 0 tRNA methyl transferase FR47 PF08445.10 gi|302348658|ref|YP_003816296.1| - 0.031 14.2 0.6 1.2 9.1 0.0 3.6 3 2 2 5 5 5 0 FR47-like protein Asn_synthase PF00733.21 gi|302348658|ref|YP_003816296.1| - 0.085 12.5 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 Asparagine synthase Adenine_deam_C PF13382.6 gi|302348659|ref|YP_003816297.1| - 3.3e-45 153.5 0.0 4.9e-45 152.9 0.0 1.3 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|302348659|ref|YP_003816297.1| - 1.4e-18 67.3 0.0 1.5e-16 60.7 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|302348659|ref|YP_003816297.1| - 8.5e-13 48.6 0.5 1.4e-06 28.1 0.1 2.4 2 0 0 2 2 2 2 Amidohydrolase family NosD PF05048.13 gi|302348660|ref|YP_003816298.1| - 1.1e-13 51.1 1.5 1.1e-13 51.1 1.5 2.0 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Mucin PF01456.17 gi|302348660|ref|YP_003816298.1| - 0.049 13.6 34.5 0.081 12.9 34.5 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein RIFIN PF02009.16 gi|302348660|ref|YP_003816298.1| - 0.33 10.8 4.3 0.41 10.5 4.3 1.1 1 0 0 1 1 1 0 Rifin FAM70 PF14967.6 gi|302348660|ref|YP_003816298.1| - 0.36 10.3 8.7 0.51 9.8 8.7 1.2 1 0 0 1 1 1 0 FAM70 protein DUF5305 PF17231.2 gi|302348660|ref|YP_003816298.1| - 1.3 8.4 9.8 1.7 8.0 9.8 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5305) AJAP1_PANP_C PF15298.6 gi|302348660|ref|YP_003816298.1| - 2.5 8.3 22.6 3.6 7.7 22.6 1.2 1 0 0 1 1 1 0 AJAP1/PANP C-terminus FSA_C PF10479.9 gi|302348660|ref|YP_003816298.1| - 5.8 4.9 13.2 7.1 4.6 13.2 1.1 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus FeoA PF04023.14 gi|302348661|ref|YP_003816299.1| - 0.0056 16.9 0.1 1.3 9.4 0.0 2.8 2 0 0 2 2 2 2 FeoA domain DUF211 PF02680.14 gi|302348661|ref|YP_003816299.1| - 0.076 13.2 6.2 4.6 7.5 0.4 3.7 2 1 1 3 3 3 0 Uncharacterized ArCR, COG1888 Ub-Mut7C PF14451.6 gi|302348661|ref|YP_003816299.1| - 1.1 9.1 3.1 6.2 6.7 0.1 3.3 3 2 1 4 4 4 0 Mut7-C ubiquitin NicO PF03824.16 gi|302348662|ref|YP_003816300.1| - 0.0047 16.3 1.0 0.0047 16.3 1.0 1.9 2 0 0 2 2 2 1 High-affinity nickel-transport protein LysE PF01810.18 gi|302348662|ref|YP_003816300.1| - 0.015 14.8 5.6 0.037 13.5 5.6 2.0 1 1 0 1 1 1 0 LysE type translocator Cys_Met_Meta_PP PF01053.20 gi|302348663|ref|YP_003816301.1| - 1.8e-108 362.5 0.0 2e-108 362.3 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|302348663|ref|YP_003816301.1| - 0.04 13.1 0.0 0.07 12.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|302348663|ref|YP_003816301.1| - 0.15 11.3 0.0 0.42 9.9 0.0 1.7 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family zinc_ribbon_4 PF13717.6 gi|302348665|ref|YP_003816303.1| - 0.00024 21.0 0.2 0.55 10.2 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.6 gi|302348665|ref|YP_003816303.1| - 0.011 15.8 0.0 3.4 7.7 0.0 2.3 2 0 0 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|302348665|ref|YP_003816303.1| - 0.025 14.6 2.4 3.1 7.8 3.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ZPR1 PF03367.13 gi|302348665|ref|YP_003816303.1| - 0.075 12.9 0.0 0.13 12.1 0.0 1.4 2 0 0 2 2 2 0 ZPR1 zinc-finger domain TF_Zn_Ribbon PF08271.12 gi|302348665|ref|YP_003816303.1| - 0.11 12.0 0.3 17 5.0 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|302348665|ref|YP_003816303.1| - 0.16 11.9 0.5 0.69 9.9 0.5 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.6 gi|302348665|ref|YP_003816303.1| - 0.22 11.3 1.8 3.3 7.6 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|302348665|ref|YP_003816303.1| - 0.56 10.8 3.3 9.9 6.8 0.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2752 PF10825.8 gi|302348665|ref|YP_003816303.1| - 3.6 7.7 7.0 8.7 6.5 0.5 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) zf-C2H2_11 PF16622.5 gi|302348665|ref|YP_003816303.1| - 3.7 7.4 4.2 0.63 9.8 0.4 1.7 2 0 0 2 2 2 0 zinc-finger C2H2-type DUF998 PF06197.13 gi|302348666|ref|YP_003816304.1| - 1.8e-24 86.4 19.4 2.3e-24 86.0 19.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Frag1 PF10277.9 gi|302348666|ref|YP_003816304.1| - 0.0034 16.9 0.5 0.0056 16.2 0.5 1.3 1 0 0 1 1 1 1 Frag1/DRAM/Sfk1 family MFS_1 PF07690.16 gi|302348667|ref|YP_003816305.1| - 1.3e-17 63.8 64.3 1.3e-17 63.8 62.2 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily Peptidase_M48_N PF16491.5 gi|302348667|ref|YP_003816305.1| - 0.042 13.7 0.7 0.042 13.7 0.7 2.0 2 0 0 2 2 2 0 CAAX prenyl protease N-terminal, five membrane helices ABC_tran PF00005.27 gi|302348668|ref|YP_003816306.1| - 4.7e-30 104.9 0.0 9.5e-30 103.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302348668|ref|YP_003816306.1| - 5e-13 49.5 0.1 4.2e-09 36.6 0.0 2.4 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|302348668|ref|YP_003816306.1| - 3e-11 43.9 0.6 5.8e-11 43.0 0.3 1.7 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) KdpD PF02702.17 gi|302348668|ref|YP_003816306.1| - 0.00013 21.5 0.1 0.00034 20.2 0.0 1.8 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain SRP54 PF00448.22 gi|302348668|ref|YP_003816306.1| - 0.003 17.2 0.1 0.019 14.6 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|302348668|ref|YP_003816306.1| - 0.0035 17.1 0.0 1.8 8.2 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|302348668|ref|YP_003816306.1| - 0.0092 16.4 1.3 0.19 12.1 0.5 3.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|302348668|ref|YP_003816306.1| - 0.012 15.9 0.0 0.99 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|302348668|ref|YP_003816306.1| - 0.015 15.0 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|302348668|ref|YP_003816306.1| - 0.02 14.6 0.4 2.2 7.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|302348668|ref|YP_003816306.1| - 0.021 15.3 0.1 0.053 14.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|302348668|ref|YP_003816306.1| - 0.027 13.9 0.0 4.8 6.6 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|302348668|ref|YP_003816306.1| - 0.033 13.9 0.2 0.18 11.5 0.1 2.0 1 1 1 2 2 2 0 AAA domain ATPase PF06745.13 gi|302348668|ref|YP_003816306.1| - 0.034 13.5 0.1 0.66 9.3 0.0 2.3 2 0 0 2 2 2 0 KaiC Hydrolase PF00702.26 gi|302348668|ref|YP_003816306.1| - 0.056 13.7 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_27 PF13514.6 gi|302348668|ref|YP_003816306.1| - 0.095 12.3 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|302348668|ref|YP_003816306.1| - 0.1 11.2 0.0 3.9 6.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain ALS_ss_C PF10369.9 gi|302348668|ref|YP_003816306.1| - 0.11 12.8 0.1 0.52 10.6 0.1 2.2 1 1 1 2 2 2 0 Small subunit of acetolactate synthase AAA_28 PF13521.6 gi|302348668|ref|YP_003816306.1| - 0.12 12.6 0.0 0.55 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|302348669|ref|YP_003816307.1| - 1e-31 110.0 19.2 1e-31 110.0 19.2 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|302348669|ref|YP_003816307.1| - 7.3e-22 77.9 20.7 7.3e-22 77.9 20.7 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|302348669|ref|YP_003816307.1| - 0.0005 20.1 10.9 0.0005 20.1 10.9 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|302348669|ref|YP_003816307.1| - 0.012 15.0 18.4 0.017 14.4 18.4 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein Citrate_synt PF00285.21 gi|302348670|ref|YP_003816308.1| - 1.8e-110 369.4 0.0 2.1e-110 369.2 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain CopG_antitoxin PF12441.8 gi|302348670|ref|YP_003816308.1| - 0.092 13.3 0.3 1.9 9.1 0.2 2.5 2 0 0 2 2 2 0 CopG antitoxin of type II toxin-antitoxin system Hjc PF01870.18 gi|302348671|ref|YP_003816309.1| - 5.6e-30 103.2 0.0 8.1e-30 102.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|302348671|ref|YP_003816309.1| - 0.00014 21.4 0.0 0.00032 20.2 0.0 1.6 2 0 0 2 2 2 1 REase_AHJR-like NERD PF08378.11 gi|302348671|ref|YP_003816309.1| - 0.0004 20.8 0.0 0.00065 20.1 0.0 1.3 1 0 0 1 1 1 1 Nuclease-related domain UPF0102 PF02021.17 gi|302348671|ref|YP_003816309.1| - 0.074 13.3 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 PDDEXK_10 PF07788.11 gi|302348671|ref|YP_003816309.1| - 0.15 12.0 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Lipoprotein_8 PF02030.15 gi|302348671|ref|YP_003816309.1| - 0.16 10.7 0.0 0.2 10.4 0.0 1.1 1 0 0 1 1 1 0 Hypothetical lipoprotein (MG045 family) MFS_1 PF07690.16 gi|302348672|ref|YP_003816310.1| - 1e-25 90.4 58.3 3.5e-18 65.7 21.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|302348672|ref|YP_003816310.1| - 1.2e-05 23.9 23.0 9.3e-05 21.0 4.5 2.0 1 1 1 2 2 2 2 Fungal trichothecene efflux pump (TRI12) Sugar_tr PF00083.24 gi|302348672|ref|YP_003816310.1| - 1.5e-05 24.1 28.3 0.00026 20.0 7.6 2.6 2 1 0 2 2 2 2 Sugar (and other) transporter TPP_enzyme_C PF02775.21 gi|302348673|ref|YP_003816311.1| - 4.8e-30 104.4 0.1 6.8e-30 103.9 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|302348673|ref|YP_003816311.1| - 6.7e-18 64.6 0.3 1.4e-17 63.6 0.3 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|302348674|ref|YP_003816312.1| - 3.6e-48 164.3 0.2 5.5e-48 163.7 0.2 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|302348674|ref|YP_003816312.1| - 4.2e-34 118.1 0.2 1.5e-33 116.4 0.0 1.9 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|302348674|ref|YP_003816312.1| - 3.5e-10 40.1 0.1 1.1e-09 38.5 0.1 1.9 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|302348674|ref|YP_003816312.1| - 1.6e-06 28.0 0.0 5.7e-06 26.2 0.0 2.0 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|302348674|ref|YP_003816312.1| - 0.028 14.1 0.1 0.067 12.8 0.1 1.7 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AA_permease_2 PF13520.6 gi|302348676|ref|YP_003816314.1| - 3.9e-05 22.7 43.4 7.5e-05 21.7 39.7 2.1 1 1 1 2 2 2 1 Amino acid permease ROK PF00480.20 gi|302348677|ref|YP_003816315.1| - 3.6e-52 177.7 0.0 4.4e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 ROK family Hexokinase_1 PF00349.21 gi|302348677|ref|YP_003816315.1| - 0.0089 15.9 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 1 Hexokinase Pribosyltran PF00156.27 gi|302348678|ref|YP_003816316.1| - 3.4e-18 65.7 0.0 5.1e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PK PF00224.21 gi|302348679|ref|YP_003816317.1| - 3.6e-82 276.0 0.1 5.1e-82 275.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|302348679|ref|YP_003816317.1| - 4.1e-11 43.2 0.0 8.1e-11 42.2 0.0 1.5 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|302348679|ref|YP_003816317.1| - 9.9e-06 24.8 0.1 2.1e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family DUF2204 PF09970.9 gi|302348680|ref|YP_003816318.1| - 2.5e-50 170.6 0.1 2.8e-50 170.5 0.1 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) DoxD PF04173.13 gi|302348681|ref|YP_003816319.1| - 1.2e-57 194.5 3.2 1.3e-57 194.4 3.2 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.12 gi|302348681|ref|YP_003816319.1| - 0.0073 16.9 13.9 0.0082 16.7 11.2 2.4 2 1 0 2 2 2 1 DoxX DoxA PF07680.11 gi|302348682|ref|YP_003816320.1| - 5.1e-43 146.1 0.0 6.7e-43 145.8 0.0 1.1 1 0 0 1 1 1 1 TQO small subunit DoxA UDG PF03167.19 gi|302348684|ref|YP_003816322.1| - 7.2e-46 156.0 0.0 9.1e-46 155.7 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Lon_C PF05362.13 gi|302348685|ref|YP_003816323.1| - 0.0013 18.3 1.3 0.0038 16.8 0.0 2.1 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain HTH_3 PF01381.22 gi|302348687|ref|YP_003816325.1| - 1.1e-08 35.0 0.2 1.4e-07 31.5 0.0 2.5 2 2 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|302348687|ref|YP_003816325.1| - 4.5e-06 26.9 0.3 3.1e-05 24.2 0.1 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|302348687|ref|YP_003816325.1| - 0.00018 21.3 0.0 0.00039 20.2 0.0 1.6 1 1 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_10 PF04967.12 gi|302348687|ref|YP_003816325.1| - 0.00066 19.4 0.1 0.069 13.0 0.0 2.5 3 0 0 3 3 3 1 HTH DNA binding domain HTH_5 PF01022.20 gi|302348687|ref|YP_003816325.1| - 0.0027 17.5 0.0 0.011 15.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|302348687|ref|YP_003816325.1| - 0.0028 17.2 0.1 0.08 12.5 0.0 2.5 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 gi|302348687|ref|YP_003816325.1| - 0.0075 16.3 0.0 0.015 15.3 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|302348687|ref|YP_003816325.1| - 0.0081 16.3 0.0 0.073 13.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain P22_Cro PF14549.6 gi|302348687|ref|YP_003816325.1| - 0.0093 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro HTH_IclR PF09339.10 gi|302348687|ref|YP_003816325.1| - 0.011 15.5 0.1 6.7 6.6 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain TetR_N PF00440.23 gi|302348687|ref|YP_003816325.1| - 0.012 15.4 0.1 0.22 11.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family MarR_2 PF12802.7 gi|302348687|ref|YP_003816325.1| - 0.012 15.5 0.1 0.11 12.4 0.0 2.4 3 0 0 3 3 3 0 MarR family Cro PF09048.10 gi|302348687|ref|YP_003816325.1| - 0.02 14.9 0.0 0.059 13.4 0.0 1.7 2 0 0 2 2 2 0 Cro HTH_11 PF08279.12 gi|302348687|ref|YP_003816325.1| - 0.02 14.8 0.0 0.1 12.6 0.0 2.1 3 0 0 3 3 3 0 HTH domain HTH_AsnC-type PF13404.6 gi|302348687|ref|YP_003816325.1| - 0.022 14.6 0.3 1.9 8.4 0.0 2.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain IF2_N PF04760.15 gi|302348687|ref|YP_003816325.1| - 0.038 13.8 0.0 0.32 10.8 0.0 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_29 PF13551.6 gi|302348687|ref|YP_003816325.1| - 0.048 13.7 0.0 0.14 12.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix HTH_23 PF13384.6 gi|302348687|ref|YP_003816325.1| - 0.058 13.2 0.1 0.27 11.1 0.0 2.1 3 0 0 3 3 3 0 Homeodomain-like domain HTH_38 PF13936.6 gi|302348687|ref|YP_003816325.1| - 0.085 12.6 0.2 0.46 10.3 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain Lactamase_B_3 PF13483.6 gi|302348689|ref|YP_003816327.1| - 1.3e-32 113.0 0.0 1.7e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|302348689|ref|YP_003816327.1| - 3.3e-15 56.2 4.0 7.5e-12 45.2 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain PGK PF00162.19 gi|302348690|ref|YP_003816328.1| - 1.2e-92 310.8 0.0 1.5e-92 310.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|302348691|ref|YP_003816329.1| - 3.3e-17 62.5 0.3 4.5e-17 62.1 0.3 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|302348691|ref|YP_003816329.1| - 1.7e-11 44.3 0.1 4.8e-11 42.8 0.1 1.8 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|302348691|ref|YP_003816329.1| - 9.8e-06 25.8 0.0 6e-05 23.3 0.0 2.3 1 1 1 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|302348691|ref|YP_003816329.1| - 0.0054 17.6 0.0 0.018 15.9 0.0 1.9 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|302348691|ref|YP_003816329.1| - 0.026 15.0 0.0 0.12 12.9 0.0 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|302348691|ref|YP_003816329.1| - 0.07 13.4 0.1 0.19 12.0 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|302348691|ref|YP_003816329.1| - 0.088 12.2 0.3 0.92 8.8 0.3 2.2 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF4352 PF11611.8 gi|302348692|ref|YP_003816330.1| - 0.0094 16.2 0.1 0.013 15.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) DUF11 PF01345.18 gi|302348692|ref|YP_003816330.1| - 0.088 13.1 6.2 0.13 12.5 5.9 1.5 1 1 0 1 1 1 0 Domain of unknown function DUF11 Arch_flagellin PF01917.16 gi|302348692|ref|YP_003816330.1| - 0.17 12.1 18.7 0.37 11.0 18.7 1.4 1 1 0 1 1 1 0 Archaebacterial flagellin CitG PF01874.16 gi|302348693|ref|YP_003816331.1| - 9e-19 68.2 0.3 1.3e-18 67.7 0.3 1.2 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DSPc PF00782.20 gi|302348694|ref|YP_003816332.1| - 1.7e-10 40.8 0.0 2.1e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|302348694|ref|YP_003816332.1| - 3.1e-05 23.7 0.0 3.7e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|302348694|ref|YP_003816332.1| - 0.00018 21.2 0.0 0.00025 20.7 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.6 gi|302348694|ref|YP_003816332.1| - 0.0024 17.9 0.0 0.0024 17.9 0.0 1.1 1 0 0 1 1 1 1 Tyrosine phosphatase family UDG PF03167.19 gi|302348695|ref|YP_003816333.1| - 2.9e-33 115.1 0.0 3.6e-33 114.8 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF5305 PF17231.2 gi|302348696|ref|YP_003816334.1| - 0.21 11.0 11.0 0.27 10.6 10.0 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5305) RIFIN PF02009.16 gi|302348696|ref|YP_003816334.1| - 0.94 9.3 3.8 1.2 9.0 3.8 1.1 1 0 0 1 1 1 0 Rifin SOG2 PF10428.9 gi|302348696|ref|YP_003816334.1| - 7.3 5.7 17.7 9.7 5.3 17.7 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein Glyco_hydro_77 PF02446.17 gi|302348697|ref|YP_003816335.1| - 5.6e-161 536.5 0.0 6.9e-161 536.2 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase DrsE_2 PF13686.6 gi|302348698|ref|YP_003816336.1| - 8e-09 35.6 0.0 1e-08 35.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|302348698|ref|YP_003816336.1| - 3.1e-05 24.3 0.0 0.00012 22.4 0.0 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family Citrate_ly_lig PF08218.11 gi|302348698|ref|YP_003816336.1| - 0.08 12.6 0.0 0.085 12.5 0.0 1.2 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain Metallophos_2 PF12850.7 gi|302348699|ref|YP_003816337.1| - 2.8e-22 79.7 0.0 3.7e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|302348699|ref|YP_003816337.1| - 3.7e-10 40.7 0.1 5.1e-09 36.9 0.1 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|302348699|ref|YP_003816337.1| - 0.077 11.3 0.0 0.1 10.8 0.0 1.2 1 0 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase MFS_1 PF07690.16 gi|302348700|ref|YP_003816338.1| - 6.3e-55 186.5 44.3 6.3e-55 186.5 44.3 1.9 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|302348700|ref|YP_003816338.1| - 1.6e-14 53.7 25.2 9.2e-13 47.8 11.5 2.5 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|302348700|ref|YP_003816338.1| - 5.3e-10 38.7 19.7 1.8e-05 23.8 5.3 2.5 2 0 0 2 2 2 2 MFS_1 like family OATP PF03137.20 gi|302348700|ref|YP_003816338.1| - 0.53 8.5 22.8 0.081 11.2 3.3 3.9 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Memo PF01875.17 gi|302348701|ref|YP_003816339.1| - 6.3e-81 271.5 0.0 7.2e-81 271.3 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein DUF5526 PF17664.1 gi|302348702|ref|YP_003816340.1| - 0.0065 16.0 0.0 0.0097 15.5 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5526) AA_kinase PF00696.28 gi|302348703|ref|YP_003816341.1| - 5.9e-29 101.4 1.1 8.1e-29 100.9 1.1 1.2 1 0 0 1 1 1 1 Amino acid kinase family DUF790 PF05626.11 gi|302348704|ref|YP_003816342.1| - 8.8e-101 337.4 0.0 1.1e-100 337.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Ad_Cy_reg PF16701.5 gi|302348704|ref|YP_003816342.1| - 0.076 12.8 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Adenylate cyclase regulatory domain ResIII PF04851.15 gi|302348705|ref|YP_003816343.1| - 3.8e-23 82.3 0.0 9.8e-23 81.0 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|302348705|ref|YP_003816343.1| - 1.2e-18 67.5 0.0 2.3e-17 63.3 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|302348705|ref|YP_003816343.1| - 1.6e-14 53.7 0.1 2.9e-14 52.9 0.1 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase XPB_DRD PF18458.1 gi|302348705|ref|YP_003816343.1| - 7.1e-10 38.6 1.0 7.1e-10 38.6 1.0 2.2 2 0 0 2 2 2 1 Xeroderma pigmentosum group B helicase damage recognition domain SNF2_N PF00176.23 gi|302348705|ref|YP_003816343.1| - 3.2e-06 26.1 0.2 0.00011 21.0 0.1 2.9 1 1 2 3 3 3 1 SNF2 family N-terminal domain DEAD PF00270.29 gi|302348705|ref|YP_003816343.1| - 1.8e-05 24.6 0.1 0.00012 21.9 0.1 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase FCD PF07729.12 gi|302348705|ref|YP_003816343.1| - 0.0025 18.2 0.4 0.0048 17.3 0.4 1.4 1 0 0 1 1 1 1 FCD domain Sacchrp_dh_C PF16653.5 gi|302348706|ref|YP_003816344.1| - 6.8e-27 95.2 0.0 8.4e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|302348706|ref|YP_003816344.1| - 1.1e-07 32.1 0.0 1.8e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|302348706|ref|YP_003816344.1| - 0.00012 22.3 0.1 0.0002 21.6 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.6 gi|302348706|ref|YP_003816344.1| - 0.0024 17.8 0.4 0.0038 17.1 0.4 1.3 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|302348706|ref|YP_003816344.1| - 0.0032 17.4 0.1 0.0055 16.6 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|302348706|ref|YP_003816344.1| - 0.005 17.0 0.1 0.0079 16.4 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|302348706|ref|YP_003816344.1| - 0.0063 15.8 0.7 0.0063 15.8 0.7 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.24 gi|302348706|ref|YP_003816344.1| - 0.01 16.3 0.0 0.016 15.6 0.0 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|302348706|ref|YP_003816344.1| - 0.028 14.0 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.6 gi|302348706|ref|YP_003816344.1| - 0.051 13.8 0.1 0.11 12.7 0.1 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain adh_short_C2 PF13561.6 gi|302348706|ref|YP_003816344.1| - 0.11 12.1 0.1 0.24 10.9 0.2 1.6 1 1 1 2 2 2 0 Enoyl-(Acyl carrier protein) reductase ApbA PF02558.16 gi|302348706|ref|YP_003816344.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Na_H_Exchanger PF00999.21 gi|302348708|ref|YP_003816346.1| - 5.3e-46 157.1 47.1 6.9e-46 156.8 47.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Band_7 PF01145.25 gi|302348709|ref|YP_003816347.1| - 2.3e-28 99.4 3.5 3e-28 99.0 3.5 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|302348709|ref|YP_003816347.1| - 0.0011 18.8 0.3 0.0019 18.0 0.2 1.4 1 1 0 1 1 1 1 SPFH domain-Band 7 family DUF2605 PF10792.9 gi|302348709|ref|YP_003816347.1| - 0.0043 16.9 0.9 0.011 15.7 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2605) NfeD PF01957.18 gi|302348710|ref|YP_003816348.1| - 2.8e-16 59.6 8.7 2.8e-16 59.6 8.7 2.9 3 1 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|302348710|ref|YP_003816348.1| - 8e-07 29.1 3.0 5.1e-06 26.5 3.0 2.0 1 1 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|302348710|ref|YP_003816348.1| - 2.9e-05 23.2 0.5 4.9e-05 22.5 0.5 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Peptidase_S49 PF01343.18 gi|302348710|ref|YP_003816348.1| - 0.00019 21.4 6.7 0.0021 18.1 0.8 3.5 2 1 1 3 3 3 1 Peptidase family S49 Peripla_BP_4 PF13407.6 gi|302348710|ref|YP_003816348.1| - 0.0016 18.1 1.3 0.0031 17.1 1.3 1.4 1 0 0 1 1 1 1 Periplasmic binding protein domain DUF1611_N PF17396.2 gi|302348710|ref|YP_003816348.1| - 0.12 12.6 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain TMEM72 PF16054.5 gi|302348710|ref|YP_003816348.1| - 3 7.5 8.5 1.3 8.7 5.1 2.1 1 1 0 1 1 1 0 Transmembrane protein family 72 NfeD PF01957.18 gi|302348711|ref|YP_003816349.1| - 1.7e-14 54.0 1.0 3e-14 53.1 1.0 1.4 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Rieske PF00355.26 gi|302348712|ref|YP_003816350.1| - 1.1e-12 47.6 0.1 1.3e-12 47.5 0.1 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|302348712|ref|YP_003816350.1| - 9.9e-09 35.1 0.0 1.3e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain RNA_pol_RpbG PF16992.5 gi|302348713|ref|YP_003816351.1| - 1.5e-37 128.3 0.0 1.6e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G RNA_pol_Rpb8 PF03870.15 gi|302348713|ref|YP_003816351.1| - 0.0036 17.5 0.2 0.013 15.6 0.1 1.9 1 1 1 2 2 2 1 RNA polymerase Rpb8 PUA PF01472.20 gi|302348714|ref|YP_003816352.1| - 1.2e-19 70.1 0.8 1.9e-19 69.4 0.8 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|302348714|ref|YP_003816352.1| - 7.7e-08 32.5 0.0 1.3e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|302348714|ref|YP_003816352.1| - 7.4e-05 22.9 0.1 0.00012 22.2 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain DUF2206 PF09971.9 gi|302348715|ref|YP_003816353.1| - 0.00068 18.5 2.9 0.00073 18.4 2.3 1.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2206) YoqO PF14037.6 gi|302348715|ref|YP_003816353.1| - 0.0019 18.7 4.0 0.0078 16.7 0.1 2.7 2 1 1 3 3 3 1 YoqO-like protein Spo0A_C PF08769.11 gi|302348715|ref|YP_003816353.1| - 0.064 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal B12D PF06522.11 gi|302348715|ref|YP_003816353.1| - 1.4 8.8 4.2 5 7.0 0.0 2.5 3 0 0 3 3 3 0 NADH-ubiquinone reductase complex 1 MLRQ subunit Sensor PF13796.6 gi|302348715|ref|YP_003816353.1| - 6.4 6.8 13.0 4.3 7.3 4.6 2.1 2 0 0 2 2 2 0 Putative sensor ATP_bind_3 PF01171.20 gi|302348716|ref|YP_003816354.1| - 2.2e-15 56.9 0.0 4.8e-15 55.8 0.0 1.5 1 1 0 1 1 1 1 PP-loop family zn-ribbon_14 PF16503.5 gi|302348716|ref|YP_003816354.1| - 0.17 11.4 8.3 0.35 10.4 1.5 3.3 3 0 0 3 3 3 0 Zinc-ribbon Peptidase_M24 PF00557.24 gi|302348717|ref|YP_003816355.1| - 8.6e-55 185.7 0.0 1.1e-54 185.4 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|302348717|ref|YP_003816355.1| - 6e-10 39.9 0.0 1.7e-09 38.4 0.0 1.8 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Ribosomal_L37e PF01907.19 gi|302348718|ref|YP_003816356.1| - 7.4e-24 83.7 9.3 8.2e-24 83.5 9.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-RING_5 PF14634.6 gi|302348718|ref|YP_003816356.1| - 0.053 13.5 1.1 0.076 13.0 1.1 1.2 1 0 0 1 1 1 0 zinc-RING finger domain zf-RING_10 PF16685.5 gi|302348718|ref|YP_003816356.1| - 0.086 13.0 0.6 0.098 12.8 0.6 1.2 1 0 0 1 1 1 0 zinc RING finger of MSL2 LSM PF01423.22 gi|302348719|ref|YP_003816357.1| - 2.7e-21 75.0 0.1 3e-21 74.9 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|302348719|ref|YP_003816357.1| - 0.001 19.2 0.1 0.0012 18.9 0.1 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Ferritin PF00210.24 gi|302348719|ref|YP_003816357.1| - 0.016 15.2 0.0 0.016 15.2 0.0 1.0 1 0 0 1 1 1 0 Ferritin-like domain Hfq PF17209.3 gi|302348719|ref|YP_003816357.1| - 0.13 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Hfq protein DEAD PF00270.29 gi|302348720|ref|YP_003816358.1| - 2.1e-22 79.8 0.0 4.1e-22 78.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|302348720|ref|YP_003816358.1| - 2.3e-15 56.9 0.4 2.5e-14 53.6 0.0 3.1 3 0 0 3 3 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|302348720|ref|YP_003816358.1| - 3.7e-11 42.3 0.1 1.4e-06 27.8 0.1 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|302348720|ref|YP_003816358.1| - 9.5e-11 41.6 0.1 1.8e-09 37.5 0.0 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix motif Helicase_C PF00271.31 gi|302348720|ref|YP_003816358.1| - 1.8e-10 41.2 0.0 2e-09 37.7 0.0 2.3 1 1 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|302348720|ref|YP_003816358.1| - 8.1e-09 35.7 0.0 1.2e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.9 gi|302348720|ref|YP_003816358.1| - 6.4e-07 29.1 0.0 2.8e-05 23.9 0.0 3.0 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda Sec63 PF02889.16 gi|302348720|ref|YP_003816358.1| - 0.0015 17.8 0.0 0.0026 17.0 0.0 1.4 1 0 0 1 1 1 1 Sec63 Brl domain Cdd1 PF11731.8 gi|302348720|ref|YP_003816358.1| - 0.002 18.3 0.0 0.012 15.8 0.0 2.2 1 1 1 2 2 2 1 Pathogenicity locus DUF4332 PF14229.6 gi|302348720|ref|YP_003816358.1| - 0.005 17.1 0.0 0.017 15.4 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) HHH_8 PF14716.6 gi|302348720|ref|YP_003816358.1| - 0.013 15.8 0.1 0.55 10.6 0.0 2.7 1 1 1 2 2 2 0 Helix-hairpin-helix domain HRDC PF00570.23 gi|302348720|ref|YP_003816358.1| - 0.016 15.2 0.9 8.9 6.4 0.0 3.9 3 2 1 4 4 4 0 HRDC domain HHH_3 PF12836.7 gi|302348720|ref|YP_003816358.1| - 0.017 15.4 0.0 0.17 12.2 0.0 2.3 1 1 0 1 1 1 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|302348720|ref|YP_003816358.1| - 0.024 14.9 0.0 3.5 8.1 0.0 2.9 2 0 0 2 2 2 0 IMS family HHH motif ATPase_2 PF01637.18 gi|302348720|ref|YP_003816358.1| - 0.049 13.5 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Putative_PNPOx PF01243.20 gi|302348720|ref|YP_003816358.1| - 0.082 13.1 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase SNF2_N PF00176.23 gi|302348720|ref|YP_003816358.1| - 0.095 11.4 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain T2SSE PF00437.20 gi|302348720|ref|YP_003816358.1| - 0.11 11.5 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MCM PF00493.23 gi|302348721|ref|YP_003816359.1| - 2.7e-97 324.3 0.0 4.4e-97 323.6 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|302348721|ref|YP_003816359.1| - 1.6e-35 121.7 0.0 2.6e-35 121.0 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|302348721|ref|YP_003816359.1| - 7.4e-28 96.8 0.7 2e-27 95.4 0.7 1.8 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|302348721|ref|YP_003816359.1| - 2.1e-17 63.6 0.7 2.1e-17 63.6 0.7 2.0 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.14 gi|302348721|ref|YP_003816359.1| - 3.8e-06 26.9 0.0 8e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|302348721|ref|YP_003816359.1| - 4.5e-06 26.2 0.0 0.0012 18.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|302348721|ref|YP_003816359.1| - 4.4e-05 23.3 0.0 0.0001 22.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|302348721|ref|YP_003816359.1| - 0.03 14.7 0.2 0.14 12.5 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 gi|302348721|ref|YP_003816359.1| - 0.099 12.2 0.0 0.38 10.3 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region Sld5 PF05916.11 gi|302348722|ref|YP_003816360.1| - 0.0041 17.6 0.1 0.0068 16.9 0.1 1.4 1 1 0 1 1 1 1 GINS complex protein Rep_fac_C PF08542.11 gi|302348723|ref|YP_003816361.1| - 9.5e-25 86.8 0.0 3.2e-24 85.2 0.0 2.0 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|302348723|ref|YP_003816361.1| - 1.6e-16 60.9 0.0 3.5e-16 59.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|302348723|ref|YP_003816361.1| - 2e-15 57.0 0.0 2.6e-11 43.6 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|302348723|ref|YP_003816361.1| - 1.6e-07 31.2 0.0 4e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|302348723|ref|YP_003816361.1| - 6.1e-07 29.7 0.3 2.3e-06 27.8 0.3 2.2 1 1 0 1 1 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|302348723|ref|YP_003816361.1| - 9.4e-07 29.2 0.2 0.0066 16.7 0.1 3.1 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|302348723|ref|YP_003816361.1| - 2.1e-06 27.8 0.0 4.2e-06 26.8 0.0 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_3 PF07726.11 gi|302348723|ref|YP_003816361.1| - 3e-06 27.1 0.0 5.2e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|302348723|ref|YP_003816361.1| - 4.1e-06 27.3 0.0 0.007 16.8 0.0 2.4 1 1 1 2 2 2 2 AAA ATPase domain AAA_18 PF13238.6 gi|302348723|ref|YP_003816361.1| - 6e-06 26.8 0.1 0.00016 22.3 0.0 2.7 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|302348723|ref|YP_003816361.1| - 9.8e-06 25.6 0.0 6e-05 23.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|302348723|ref|YP_003816361.1| - 5.1e-05 23.3 0.0 0.00011 22.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|302348723|ref|YP_003816361.1| - 0.00022 20.7 0.0 0.0038 16.6 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DNA_pol3_delta PF06144.13 gi|302348723|ref|YP_003816361.1| - 0.00039 20.2 0.0 0.0018 18.1 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_7 PF12775.7 gi|302348723|ref|YP_003816361.1| - 0.00046 19.8 0.0 0.00072 19.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region TIP49 PF06068.13 gi|302348723|ref|YP_003816361.1| - 0.0007 18.9 0.0 0.051 12.8 0.0 2.2 2 0 0 2 2 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|302348723|ref|YP_003816361.1| - 0.00089 18.5 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) PhoH PF02562.16 gi|302348723|ref|YP_003816361.1| - 0.0012 18.4 0.1 0.16 11.4 0.0 2.3 1 1 0 2 2 2 1 PhoH-like protein ResIII PF04851.15 gi|302348723|ref|YP_003816361.1| - 0.0016 18.5 0.0 0.027 14.5 0.0 2.2 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|302348723|ref|YP_003816361.1| - 0.0032 17.2 0.0 0.0061 16.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein TniB PF05621.11 gi|302348723|ref|YP_003816361.1| - 0.0034 16.8 0.1 0.073 12.5 0.0 2.3 1 1 1 2 2 2 1 Bacterial TniB protein AAA_33 PF13671.6 gi|302348723|ref|YP_003816361.1| - 0.0036 17.5 0.1 0.013 15.6 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|302348723|ref|YP_003816361.1| - 0.0045 16.8 0.0 0.0098 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|302348723|ref|YP_003816361.1| - 0.0055 16.4 0.3 0.07 12.8 0.1 2.7 2 2 1 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|302348723|ref|YP_003816361.1| - 0.0064 16.7 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|302348723|ref|YP_003816361.1| - 0.0064 15.9 0.0 0.017 14.5 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family KTI12 PF08433.10 gi|302348723|ref|YP_003816361.1| - 0.007 15.8 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 ATPase_2 PF01637.18 gi|302348723|ref|YP_003816361.1| - 0.0093 15.9 0.0 0.04 13.8 0.0 1.9 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|302348723|ref|YP_003816361.1| - 0.0096 15.6 0.1 0.36 10.5 0.0 2.5 3 0 0 3 3 2 1 Sigma-54 interaction domain AAA_25 PF13481.6 gi|302348723|ref|YP_003816361.1| - 0.011 15.3 0.2 0.063 12.9 0.1 2.2 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|302348723|ref|YP_003816361.1| - 0.014 15.8 0.0 0.029 14.7 0.0 1.6 2 0 0 2 2 1 0 RNA helicase AAA_2 PF07724.14 gi|302348723|ref|YP_003816361.1| - 0.019 15.1 0.0 0.1 12.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) T2SSE PF00437.20 gi|302348723|ref|YP_003816361.1| - 0.023 13.8 0.0 0.067 12.2 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 gi|302348723|ref|YP_003816361.1| - 0.025 14.7 0.0 0.087 12.9 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.18 gi|302348723|ref|YP_003816361.1| - 0.031 14.0 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.6 gi|302348723|ref|YP_003816361.1| - 0.035 13.8 0.0 0.091 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|302348723|ref|YP_003816361.1| - 0.039 13.9 0.0 0.33 10.9 0.0 2.2 1 1 1 2 2 2 0 NTPase NACHT PF05729.12 gi|302348723|ref|YP_003816361.1| - 0.054 13.4 0.0 0.19 11.6 0.0 1.9 1 1 0 1 1 1 0 NACHT domain TPR_6 PF13174.6 gi|302348723|ref|YP_003816361.1| - 0.057 14.1 0.7 43 5.1 0.1 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat AAA_19 PF13245.6 gi|302348723|ref|YP_003816361.1| - 0.06 13.7 0.2 0.48 10.8 0.0 2.0 1 1 1 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|302348723|ref|YP_003816361.1| - 0.071 13.0 0.0 0.27 11.1 0.0 1.9 2 1 0 2 2 2 0 Adenylylsulphate kinase DUF2075 PF09848.9 gi|302348723|ref|YP_003816361.1| - 0.079 12.2 0.1 0.64 9.2 0.1 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|302348723|ref|YP_003816361.1| - 0.12 11.5 0.0 0.26 10.4 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|302348723|ref|YP_003816361.1| - 0.13 11.5 0.0 0.25 10.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DEK_C PF08766.11 gi|302348723|ref|YP_003816361.1| - 0.31 11.0 2.4 0.91 9.5 0.0 2.9 3 0 0 3 3 2 0 DEK C terminal domain AAA PF00004.29 gi|302348724|ref|YP_003816362.1| - 2.5e-13 50.6 0.0 5.4e-13 49.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|302348724|ref|YP_003816362.1| - 3.7e-07 30.7 0.0 1.1e-06 29.2 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|302348724|ref|YP_003816362.1| - 2.5e-06 27.3 0.0 5.3e-06 26.3 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|302348724|ref|YP_003816362.1| - 2.2e-05 23.8 0.0 6.4e-05 22.2 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|302348724|ref|YP_003816362.1| - 9.4e-05 22.4 0.0 0.00019 21.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.18 gi|302348724|ref|YP_003816362.1| - 0.00012 22.0 0.0 0.00025 21.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial dnaA protein Rad17 PF03215.15 gi|302348724|ref|YP_003816362.1| - 0.00062 19.7 0.0 0.0019 18.1 0.0 1.8 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|302348724|ref|YP_003816362.1| - 0.00085 19.6 0.0 0.031 14.6 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|302348724|ref|YP_003816362.1| - 0.0017 18.7 0.1 0.0046 17.3 0.1 1.8 1 0 0 1 1 1 1 AAA C-terminal domain AAA_25 PF13481.6 gi|302348724|ref|YP_003816362.1| - 0.0018 17.9 0.0 0.0094 15.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|302348724|ref|YP_003816362.1| - 0.0059 17.1 0.0 0.033 14.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|302348724|ref|YP_003816362.1| - 0.0092 16.4 0.0 0.024 15.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|302348724|ref|YP_003816362.1| - 0.013 15.6 0.0 0.03 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_14 PF13173.6 gi|302348724|ref|YP_003816362.1| - 0.019 15.0 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DNA_pol3_delta PF06144.13 gi|302348724|ref|YP_003816362.1| - 0.031 14.1 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AAA_24 PF13479.6 gi|302348724|ref|YP_003816362.1| - 0.037 13.8 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|302348724|ref|YP_003816362.1| - 0.057 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|302348724|ref|YP_003816362.1| - 0.059 13.1 0.0 0.14 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|302348724|ref|YP_003816362.1| - 0.067 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region PPV_E1_C PF00519.17 gi|302348724|ref|YP_003816362.1| - 0.068 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase IstB_IS21 PF01695.17 gi|302348724|ref|YP_003816362.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|302348724|ref|YP_003816362.1| - 0.14 12.0 0.0 0.65 9.9 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|302348724|ref|YP_003816362.1| - 0.17 11.8 0.0 2.4 8.0 0.0 2.5 2 1 1 3 3 2 0 NACHT domain AMP-binding PF00501.28 gi|302348725|ref|YP_003816363.1| - 3.6e-68 230.1 0.1 4.4e-68 229.8 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|302348725|ref|YP_003816363.1| - 1.6e-14 54.6 1.7 2.9e-14 53.8 0.1 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF4908 PF16252.5 gi|302348725|ref|YP_003816363.1| - 0.088 12.3 0.0 0.34 10.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4908) MR_MLE_C PF13378.6 gi|302348726|ref|YP_003816364.1| - 6.5e-47 159.9 0.1 1.3e-46 159.0 0.0 1.5 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|302348726|ref|YP_003816364.1| - 8.9e-13 48.5 0.0 1.6e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PadR PF03551.14 gi|302348728|ref|YP_003816366.1| - 9.8e-12 44.7 0.0 1.6e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|302348728|ref|YP_003816366.1| - 8.3e-05 22.5 0.1 0.00015 21.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|302348728|ref|YP_003816366.1| - 0.0037 17.1 0.1 0.0067 16.3 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|302348728|ref|YP_003816366.1| - 0.012 15.9 0.0 0.05 14.0 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_27 PF13463.6 gi|302348728|ref|YP_003816366.1| - 0.02 15.4 0.0 0.044 14.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain YjcQ PF09639.10 gi|302348728|ref|YP_003816366.1| - 0.033 14.4 0.0 0.081 13.1 0.0 1.7 1 1 0 1 1 1 0 YjcQ protein DUF4364 PF14277.6 gi|302348728|ref|YP_003816366.1| - 0.039 13.7 0.0 0.05 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) FUR PF01475.19 gi|302348728|ref|YP_003816366.1| - 0.096 12.8 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family MarR PF01047.22 gi|302348728|ref|YP_003816366.1| - 0.14 12.1 0.0 0.35 10.8 0.0 1.7 1 1 0 1 1 1 0 MarR family Peptidase_M20 PF01546.28 gi|302348729|ref|YP_003816367.1| - 2.2e-37 128.8 0.0 3.5e-37 128.1 0.0 1.3 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|302348729|ref|YP_003816367.1| - 4.1e-17 62.1 0.0 7e-17 61.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|302348729|ref|YP_003816367.1| - 0.21 11.2 0.1 0.35 10.5 0.1 1.3 1 0 0 1 1 1 0 Peptidase family M28 AhpC-TSA PF00578.21 gi|302348730|ref|YP_003816368.1| - 6.7e-37 126.2 0.0 8.5e-37 125.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|302348730|ref|YP_003816368.1| - 1.7e-17 63.5 0.0 2.2e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|302348730|ref|YP_003816368.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 SCO1/SenC Hepatitis_core PF00906.20 gi|302348730|ref|YP_003816368.1| - 0.077 12.5 0.0 0.099 12.2 0.0 1.1 1 0 0 1 1 1 0 Hepatitis core antigen ParA PF10609.9 gi|302348731|ref|YP_003816369.1| - 7.6e-87 290.8 0.0 9.3e-87 290.5 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|302348731|ref|YP_003816369.1| - 8.8e-15 54.9 0.0 8.3e-14 51.8 0.0 2.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|302348731|ref|YP_003816369.1| - 1.6e-09 37.6 0.1 0.00014 21.4 0.0 2.6 3 0 0 3 3 3 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|302348731|ref|YP_003816369.1| - 2.4e-06 27.6 0.3 9.8e-06 25.6 0.1 1.9 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|302348731|ref|YP_003816369.1| - 0.00022 20.6 0.0 0.00038 19.8 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.6 gi|302348731|ref|YP_003816369.1| - 0.0028 17.3 0.0 0.0071 15.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|302348731|ref|YP_003816369.1| - 0.0029 16.8 0.5 0.0059 15.8 0.5 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|302348731|ref|YP_003816369.1| - 0.0052 16.6 1.3 0.45 10.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|302348731|ref|YP_003816369.1| - 0.061 12.8 0.1 0.28 10.6 0.1 1.9 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_30 PF13604.6 gi|302348731|ref|YP_003816369.1| - 0.09 12.5 0.3 0.23 11.2 0.2 1.7 2 0 0 2 2 2 0 AAA domain Ribosomal_L23 PF00276.20 gi|302348732|ref|YP_003816370.1| - 3.4e-20 72.2 0.8 1.1e-19 70.6 0.8 1.6 1 1 0 1 1 1 1 Ribosomal protein L23 DUF3159 PF11361.8 gi|302348732|ref|YP_003816370.1| - 0.12 12.1 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) Ribosomal_L4 PF00573.22 gi|302348733|ref|YP_003816371.1| - 7.6e-39 133.4 0.0 8.8e-39 133.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|302348734|ref|YP_003816372.1| - 5.7e-62 209.8 0.0 6.9e-62 209.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 HAD_2 PF13419.6 gi|302348735|ref|YP_003816373.1| - 3.4e-22 79.4 0.0 4.6e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|302348735|ref|YP_003816373.1| - 9.4e-14 52.2 0.2 5.4e-12 46.4 0.2 2.5 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|302348735|ref|YP_003816373.1| - 9.7e-10 39.1 0.0 1.7e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|302348735|ref|YP_003816373.1| - 0.00026 21.0 0.0 0.00066 19.7 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 gi|302348735|ref|YP_003816373.1| - 0.06 13.1 0.0 11 5.6 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase RepL PF05732.11 gi|302348735|ref|YP_003816373.1| - 0.17 11.3 0.1 2.5 7.5 0.0 2.1 1 1 1 2 2 2 0 Firmicute plasmid replication protein (RepL) Macro PF01661.21 gi|302348737|ref|YP_003816375.1| - 2.2e-30 105.1 0.2 3e-30 104.7 0.2 1.2 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.6 gi|302348737|ref|YP_003816375.1| - 2.9e-05 23.5 0.3 0.00097 18.5 0.3 2.4 1 1 0 1 1 1 1 Macro-like domain ABC_tran PF00005.27 gi|302348738|ref|YP_003816376.1| - 2.5e-28 99.3 0.0 3.6e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302348738|ref|YP_003816376.1| - 1e-08 35.4 0.5 0.00087 19.2 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|302348738|ref|YP_003816376.1| - 4.8e-06 26.5 0.0 1.2e-05 25.2 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|302348738|ref|YP_003816376.1| - 2.4e-05 24.0 0.0 6.3e-05 22.6 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|302348738|ref|YP_003816376.1| - 0.00011 21.7 0.1 0.17 11.3 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|302348738|ref|YP_003816376.1| - 0.00012 22.0 0.0 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|302348738|ref|YP_003816376.1| - 0.00014 22.4 0.0 0.00021 21.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|302348738|ref|YP_003816376.1| - 0.00051 20.5 0.0 0.00091 19.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|302348738|ref|YP_003816376.1| - 0.00092 19.6 0.1 0.81 10.1 0.0 2.5 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|302348738|ref|YP_003816376.1| - 0.0012 19.2 0.1 0.0035 17.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|302348738|ref|YP_003816376.1| - 0.0014 18.7 0.0 0.0036 17.4 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase Rad17 PF03215.15 gi|302348738|ref|YP_003816376.1| - 0.0046 16.9 0.0 0.007 16.3 0.0 1.4 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|302348738|ref|YP_003816376.1| - 0.0047 16.7 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|302348738|ref|YP_003816376.1| - 0.0055 15.8 0.0 0.008 15.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_27 PF13514.6 gi|302348738|ref|YP_003816376.1| - 0.012 15.3 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|302348738|ref|YP_003816376.1| - 0.023 14.8 0.1 0.048 13.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|302348738|ref|YP_003816376.1| - 0.032 14.5 0.1 0.087 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|302348738|ref|YP_003816376.1| - 0.046 13.6 0.0 0.13 12.1 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Adeno_IVa2 PF02456.15 gi|302348738|ref|YP_003816376.1| - 0.064 12.1 0.0 0.12 11.2 0.0 1.4 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_18 PF13238.6 gi|302348738|ref|YP_003816376.1| - 0.13 12.8 0.1 0.25 11.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.9 gi|302348738|ref|YP_003816376.1| - 0.17 10.6 0.0 0.26 10.0 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein IstB_IS21 PF01695.17 gi|302348738|ref|YP_003816376.1| - 0.17 11.6 0.0 0.36 10.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_ATPase PF09818.9 gi|302348738|ref|YP_003816376.1| - 0.18 10.5 0.0 9.6 4.9 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.19 gi|302348738|ref|YP_003816376.1| - 0.19 11.3 0.2 0.38 10.3 0.1 1.6 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|302348738|ref|YP_003816376.1| - 0.19 11.4 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|302348739|ref|YP_003816377.1| - 1.9e-15 57.1 44.6 5e-13 49.2 13.9 3.2 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component ADH_zinc_N PF00107.26 gi|302348740|ref|YP_003816378.1| - 5.6e-17 62.0 0.0 1.2e-16 60.8 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|302348740|ref|YP_003816378.1| - 4.9e-11 42.5 0.5 2.1e-09 37.2 0.1 2.8 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|302348740|ref|YP_003816378.1| - 9.5e-09 36.4 0.0 1.8e-08 35.5 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.6 gi|302348740|ref|YP_003816378.1| - 0.0068 16.3 0.1 0.012 15.5 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|302348740|ref|YP_003816378.1| - 0.18 11.3 0.4 0.77 9.2 0.1 2.1 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family NAD_binding_2 PF03446.15 gi|302348741|ref|YP_003816379.1| - 2.8e-22 79.6 0.0 4.8e-22 78.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|302348741|ref|YP_003816379.1| - 1.6e-12 47.7 0.3 3.2e-12 46.8 0.3 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|302348741|ref|YP_003816379.1| - 1.9e-06 27.4 0.0 3.1e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|302348741|ref|YP_003816379.1| - 1.5e-05 25.5 0.0 7.3e-05 23.3 0.0 2.2 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|302348741|ref|YP_003816379.1| - 4.4e-05 23.4 0.0 7.5e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|302348741|ref|YP_003816379.1| - 0.018 15.3 0.0 0.058 13.7 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain RuvA_C PF07499.13 gi|302348741|ref|YP_003816379.1| - 0.044 14.2 5.7 0.41 11.2 0.1 2.9 2 1 0 2 2 2 0 RuvA, C-terminal domain Peptidase_M20 PF01546.28 gi|302348741|ref|YP_003816379.1| - 0.068 12.9 0.0 0.099 12.3 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 UDPG_MGDP_dh_N PF03721.14 gi|302348741|ref|YP_003816379.1| - 0.15 11.6 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DDE_Tnp_Tn3 PF01526.17 gi|302348741|ref|YP_003816379.1| - 0.21 10.3 0.0 0.33 9.7 0.0 1.2 1 0 0 1 1 1 0 Tn3 transposase DDE domain Ribonuc_L-PSP PF01042.21 gi|302348742|ref|YP_003816380.1| - 3.5e-42 143.2 0.0 3.9e-42 143.1 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Asparaginase_2 PF01112.18 gi|302348742|ref|YP_003816380.1| - 0.045 12.8 0.0 0.055 12.5 0.0 1.1 1 0 0 1 1 1 0 Asparaginase ApbA_C PF08546.11 gi|302348742|ref|YP_003816380.1| - 0.049 13.8 0.0 0.072 13.3 0.0 1.1 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA C terminal DUF357 PF04010.13 gi|302348743|ref|YP_003816381.1| - 9.4e-15 54.4 0.3 1.5e-14 53.8 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|302348743|ref|YP_003816381.1| - 5.7e-13 49.3 0.0 7.4e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|302348743|ref|YP_003816381.1| - 0.02 14.8 0.0 0.051 13.5 0.1 1.8 1 1 1 2 2 2 0 FAD synthetase T4_deiodinase PF00837.17 gi|302348743|ref|YP_003816381.1| - 0.085 12.1 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase Spt5-NGN PF03439.13 gi|302348744|ref|YP_003816382.1| - 1.1e-12 47.7 0.0 1.6e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|302348744|ref|YP_003816382.1| - 0.00027 20.8 3.4 0.00086 19.2 3.4 1.9 1 0 0 1 1 1 1 KOW motif SecE PF00584.20 gi|302348745|ref|YP_003816383.1| - 0.0016 18.3 0.0 0.0018 18.2 0.0 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex AMMECR1 PF01871.17 gi|302348746|ref|YP_003816384.1| - 5.2e-49 166.0 0.0 6.3e-49 165.8 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 DNA_ligase_ZBD PF03119.16 gi|302348747|ref|YP_003816385.1| - 0.033 14.2 0.4 0.076 13.1 0.4 1.9 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-FPG_IleRS PF06827.14 gi|302348747|ref|YP_003816385.1| - 0.034 14.0 0.1 0.079 12.8 0.1 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.6 gi|302348747|ref|YP_003816385.1| - 0.045 13.2 0.1 0.072 12.5 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|302348747|ref|YP_003816385.1| - 0.079 13.4 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-Di19 PF05605.12 gi|302348747|ref|YP_003816385.1| - 0.14 12.5 0.1 0.18 12.1 0.1 1.4 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf_UBZ PF18439.1 gi|302348747|ref|YP_003816385.1| - 0.15 11.7 0.1 0.2 11.3 0.1 1.2 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 gi|302348747|ref|YP_003816385.1| - 0.16 12.3 0.0 0.23 11.8 0.0 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding Endonuclease_5 PF04493.14 gi|302348748|ref|YP_003816386.1| - 8.5e-45 152.9 0.0 1.1e-44 152.5 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V Proteasome PF00227.26 gi|302348749|ref|YP_003816387.1| - 4.5e-51 173.1 1.3 5e-51 172.9 1.3 1.0 1 0 0 1 1 1 1 Proteasome subunit MarR_2 PF12802.7 gi|302348750|ref|YP_003816388.1| - 0.0011 18.8 0.1 0.0032 17.3 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|302348750|ref|YP_003816388.1| - 0.0092 15.9 0.0 0.024 14.6 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF1974 PF09317.11 gi|302348750|ref|YP_003816388.1| - 0.027 14.0 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1974) HTH_DeoR PF08220.12 gi|302348750|ref|YP_003816388.1| - 0.03 14.1 0.0 0.12 12.2 0.0 2.1 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|302348750|ref|YP_003816388.1| - 0.04 13.9 0.0 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_8 PF02954.19 gi|302348750|ref|YP_003816388.1| - 0.041 13.7 0.1 0.38 10.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Crp PF00325.20 gi|302348750|ref|YP_003816388.1| - 0.042 13.5 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family GntR PF00392.21 gi|302348750|ref|YP_003816388.1| - 0.043 13.5 1.4 0.31 10.7 0.2 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DASH_Dad2 PF08654.10 gi|302348750|ref|YP_003816388.1| - 0.045 14.2 0.6 0.1 13.0 0.1 1.8 2 0 0 2 2 2 0 DASH complex subunit Dad2 Fe_dep_repress PF01325.19 gi|302348750|ref|YP_003816388.1| - 0.057 13.6 0.1 0.18 12.0 0.1 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|302348750|ref|YP_003816388.1| - 0.086 12.9 0.0 2.2 8.4 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn helix HTH_23 PF13384.6 gi|302348750|ref|YP_003816388.1| - 0.1 12.4 0.0 2.6 8.0 0.0 3.0 3 0 0 3 3 3 0 Homeodomain-like domain FAM25 PF15825.5 gi|302348750|ref|YP_003816388.1| - 0.52 10.7 3.3 0.42 11.0 0.2 2.5 3 0 0 3 3 2 0 FAM25 family AAA PF00004.29 gi|302348751|ref|YP_003816389.1| - 1.7e-37 128.8 0.0 4e-37 127.6 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|302348751|ref|YP_003816389.1| - 6.5e-13 48.3 0.2 2.1e-12 46.6 0.0 1.9 2 0 0 2 2 2 1 AAA+ lid domain Vps4_C PF09336.10 gi|302348751|ref|YP_003816389.1| - 1.6e-07 31.2 0.2 5.2e-07 29.6 0.1 1.9 2 0 0 2 2 1 1 Vps4 C terminal oligomerisation domain AAA_5 PF07728.14 gi|302348751|ref|YP_003816389.1| - 2.3e-06 27.7 0.1 2.8e-05 24.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|302348751|ref|YP_003816389.1| - 7.7e-06 26.2 0.0 0.003 17.8 0.0 3.4 2 1 1 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|302348751|ref|YP_003816389.1| - 9e-06 26.2 0.1 0.0016 18.8 0.0 2.8 2 1 0 3 3 2 1 AAA ATPase domain MIT PF04212.18 gi|302348751|ref|YP_003816389.1| - 1.3e-05 25.1 1.4 4.4e-05 23.5 1.4 1.9 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_2 PF07724.14 gi|302348751|ref|YP_003816389.1| - 4.4e-05 23.7 0.0 0.0001 22.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|302348751|ref|YP_003816389.1| - 0.00012 21.9 0.1 0.0017 18.1 0.0 2.4 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|302348751|ref|YP_003816389.1| - 0.00012 22.1 0.0 0.00053 20.0 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_24 PF13479.6 gi|302348751|ref|YP_003816389.1| - 0.00013 21.8 1.4 0.004 16.9 0.2 3.0 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|302348751|ref|YP_003816389.1| - 0.00017 21.2 1.2 0.0025 17.4 0.2 2.6 1 1 2 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|302348751|ref|YP_003816389.1| - 0.00029 21.4 0.3 0.063 13.8 0.0 2.9 2 1 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|302348751|ref|YP_003816389.1| - 0.00066 19.0 0.2 0.0028 16.9 0.1 1.9 1 1 1 2 2 2 1 TIP49 P-loop domain RNA_helicase PF00910.22 gi|302348751|ref|YP_003816389.1| - 0.0011 19.3 0.0 0.0096 16.3 0.0 2.4 3 0 0 3 3 3 1 RNA helicase AAA_33 PF13671.6 gi|302348751|ref|YP_003816389.1| - 0.0023 18.1 0.0 0.013 15.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|302348751|ref|YP_003816389.1| - 0.0025 17.3 0.0 0.0052 16.2 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|302348751|ref|YP_003816389.1| - 0.0033 17.4 0.0 0.013 15.4 0.0 2.0 2 0 0 2 2 2 1 NACHT domain IstB_IS21 PF01695.17 gi|302348751|ref|YP_003816389.1| - 0.0033 17.2 0.0 0.0065 16.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein TPR_6 PF13174.6 gi|302348751|ref|YP_003816389.1| - 0.0071 16.9 0.2 0.036 14.7 0.2 2.3 1 0 0 1 1 1 1 Tetratricopeptide repeat ATPase_2 PF01637.18 gi|302348751|ref|YP_003816389.1| - 0.016 15.1 2.4 4.1 7.2 0.0 3.2 3 1 1 4 4 4 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|302348751|ref|YP_003816389.1| - 0.025 13.9 0.3 0.66 9.3 0.0 2.7 2 1 1 3 3 3 0 KaiC Sigma54_activat PF00158.26 gi|302348751|ref|YP_003816389.1| - 0.028 14.1 0.0 0.17 11.6 0.0 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain NA37 PF04245.13 gi|302348751|ref|YP_003816389.1| - 0.054 13.0 1.0 7.5 5.9 0.2 2.7 2 1 1 3 3 3 0 37-kD nucleoid-associated bacterial protein AAA_28 PF13521.6 gi|302348751|ref|YP_003816389.1| - 0.071 13.4 0.1 0.22 11.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 gi|302348751|ref|YP_003816389.1| - 0.073 12.5 0.1 0.2 11.1 0.1 1.7 1 0 0 1 1 1 0 PhoH-like protein Zeta_toxin PF06414.12 gi|302348751|ref|YP_003816389.1| - 0.074 12.3 0.2 0.71 9.1 0.0 2.4 3 0 0 3 3 3 0 Zeta toxin Parvo_NS1 PF01057.17 gi|302348751|ref|YP_003816389.1| - 0.085 11.9 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.6 gi|302348751|ref|YP_003816389.1| - 0.1 12.4 0.0 0.41 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain TPR_14 PF13428.6 gi|302348751|ref|YP_003816389.1| - 0.39 11.7 2.2 0.72 10.8 0.0 2.6 4 0 0 4 4 1 0 Tetratricopeptide repeat HetR_C PF18460.1 gi|302348751|ref|YP_003816389.1| - 0.52 10.3 2.8 4.1 7.4 0.1 2.7 2 0 0 2 2 2 0 Heterocyst differentiation regulator C-terminal Hood domain Gp-FAR-1 PF05823.12 gi|302348751|ref|YP_003816389.1| - 0.74 10.2 4.1 0.72 10.2 0.3 2.5 3 0 0 3 3 3 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) TPR_2 PF07719.17 gi|302348751|ref|YP_003816389.1| - 1.8 8.9 6.5 0.66 10.2 1.1 2.6 2 1 1 3 3 3 0 Tetratricopeptide repeat PCMT PF01135.19 gi|302348752|ref|YP_003816390.1| - 1e-06 28.7 0.0 1.6e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|302348752|ref|YP_003816390.1| - 1.9e-06 28.5 0.0 2.3e-05 25.0 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|302348752|ref|YP_003816390.1| - 0.00016 22.2 0.0 0.0012 19.5 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|302348752|ref|YP_003816390.1| - 0.00027 20.5 0.0 0.00042 19.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|302348752|ref|YP_003816390.1| - 0.00033 20.5 0.0 0.0008 19.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|302348752|ref|YP_003816390.1| - 0.00034 20.0 0.0 0.00044 19.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|302348752|ref|YP_003816390.1| - 0.0014 18.5 0.0 0.014 15.2 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|302348752|ref|YP_003816390.1| - 0.0029 16.7 0.0 0.0037 16.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.15 gi|302348752|ref|YP_003816390.1| - 0.0059 16.3 0.0 0.0087 15.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.6 gi|302348752|ref|YP_003816390.1| - 0.012 16.6 0.0 0.055 14.5 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Spermine_synth PF01564.17 gi|302348752|ref|YP_003816390.1| - 0.015 14.7 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase domain Methyltransf_12 PF08242.12 gi|302348752|ref|YP_003816390.1| - 0.063 14.0 0.0 0.21 12.4 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|302348752|ref|YP_003816390.1| - 0.11 12.4 0.0 0.28 11.1 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain KA1 PF02149.19 gi|302348752|ref|YP_003816390.1| - 0.12 12.2 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Kinase associated domain 1 DUF87 PF01935.17 gi|302348753|ref|YP_003816391.1| - 6.4e-48 163.8 0.0 9.5e-48 163.3 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|302348753|ref|YP_003816391.1| - 1.2e-06 27.4 0.0 0.00014 20.6 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|302348753|ref|YP_003816391.1| - 0.00049 20.2 0.0 0.0014 18.7 0.0 1.8 2 0 0 2 2 2 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|302348753|ref|YP_003816391.1| - 0.018 14.0 0.0 0.16 10.9 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|302348753|ref|YP_003816391.1| - 0.032 13.6 0.1 8.3 5.7 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family NurA PF09376.10 gi|302348754|ref|YP_003816392.1| - 1.6e-17 64.0 0.0 3.6e-17 62.9 0.0 1.5 1 1 0 1 1 1 1 NurA domain SMC_N PF02463.19 gi|302348755|ref|YP_003816393.1| - 6.8e-25 87.8 1.4 2.2e-24 86.1 1.4 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|302348755|ref|YP_003816393.1| - 2.9e-17 62.6 33.9 4.5e-15 55.4 9.5 5.1 2 1 2 4 4 4 2 AAA domain AAA_23 PF13476.6 gi|302348755|ref|YP_003816393.1| - 4.7e-15 56.6 14.7 4.7e-15 56.6 14.7 5.7 1 1 0 2 2 1 1 AAA domain AAA_21 PF13304.6 gi|302348755|ref|YP_003816393.1| - 1.2e-14 54.8 0.4 9.8e-09 35.4 0.1 2.7 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|302348755|ref|YP_003816393.1| - 9.6e-12 45.3 5.5 4.2e-06 26.7 0.0 3.0 3 1 0 3 3 2 2 AAA ATPase domain Rad50_zn_hook PF04423.14 gi|302348755|ref|YP_003816393.1| - 1.5e-08 34.3 0.0 1.5e-08 34.3 0.0 3.8 3 0 0 3 3 2 1 Rad50 zinc hook motif ABC_tran PF00005.27 gi|302348755|ref|YP_003816393.1| - 2.3e-07 31.4 7.6 0.0065 17.0 0.0 4.7 3 2 0 4 4 4 2 ABC transporter SbcCD_C PF13558.6 gi|302348755|ref|YP_003816393.1| - 3e-07 30.6 0.0 7.8e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NPV_P10 PF05531.12 gi|302348755|ref|YP_003816393.1| - 1.1e-06 29.0 18.3 1 9.9 1.7 7.5 3 2 3 7 7 7 2 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|302348755|ref|YP_003816393.1| - 2.1e-06 27.8 19.8 0.83 9.7 0.4 6.2 3 2 2 6 6 6 2 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.9 gi|302348755|ref|YP_003816393.1| - 2e-05 24.6 75.6 0.29 11.1 14.8 6.8 3 2 3 6 6 6 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 gi|302348755|ref|YP_003816393.1| - 5.8e-05 23.1 31.3 0.1 12.6 3.6 6.6 4 3 1 6 6 6 3 Protein of unknown function (DUF1664) Zw10 PF06248.13 gi|302348755|ref|YP_003816393.1| - 0.00014 20.6 0.5 0.00014 20.6 0.5 3.5 2 1 2 4 4 3 1 Centromere/kinetochore Zw10 BLOC1_2 PF10046.9 gi|302348755|ref|YP_003816393.1| - 0.00024 21.3 37.4 0.068 13.5 1.5 8.2 4 3 4 8 8 8 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_29 PF13555.6 gi|302348755|ref|YP_003816393.1| - 0.00054 19.7 0.0 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4407 PF14362.6 gi|302348755|ref|YP_003816393.1| - 0.00066 19.1 34.8 0.24 10.7 10.2 4.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4407) Nup54 PF13874.6 gi|302348755|ref|YP_003816393.1| - 0.0013 18.9 5.9 0.0013 18.9 5.9 6.5 2 1 1 5 5 5 1 Nucleoporin complex subunit 54 Spc7 PF08317.11 gi|302348755|ref|YP_003816393.1| - 0.0033 16.4 65.4 0.39 9.6 2.3 5.1 2 2 2 5 5 5 4 Spc7 kinetochore protein Phage_GP20 PF06810.11 gi|302348755|ref|YP_003816393.1| - 0.0039 17.0 2.1 0.0039 17.0 2.1 5.7 3 2 3 6 6 6 1 Phage minor structural protein GP20 Sec34 PF04136.15 gi|302348755|ref|YP_003816393.1| - 0.0055 16.6 3.6 0.0055 16.6 3.6 5.9 3 3 3 8 8 7 1 Sec34-like family DUF948 PF06103.11 gi|302348755|ref|YP_003816393.1| - 0.0057 16.9 17.1 4.7 7.6 0.1 6.7 4 3 1 5 5 5 0 Bacterial protein of unknown function (DUF948) TACC_C PF05010.14 gi|302348755|ref|YP_003816393.1| - 0.0081 16.0 38.7 0.12 12.1 9.6 4.4 3 1 0 4 4 4 2 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Allexi_40kDa PF05549.11 gi|302348755|ref|YP_003816393.1| - 0.0081 15.7 16.3 0.72 9.3 0.4 4.9 3 1 1 5 5 5 1 Allexivirus 40kDa protein ApoO PF09769.9 gi|302348755|ref|YP_003816393.1| - 0.018 15.0 7.5 3 7.8 0.0 4.6 4 1 0 4 4 4 0 Apolipoprotein O MAD PF05557.13 gi|302348755|ref|YP_003816393.1| - 0.018 13.4 60.4 0.049 12.0 16.4 3.8 2 2 2 4 4 4 0 Mitotic checkpoint protein Seryl_tRNA_N PF02403.22 gi|302348755|ref|YP_003816393.1| - 0.02 15.1 57.6 0.18 12.0 6.6 7.4 3 2 4 7 7 6 0 Seryl-tRNA synthetase N-terminal domain AAA_27 PF13514.6 gi|302348755|ref|YP_003816393.1| - 0.033 13.8 0.0 0.033 13.8 0.0 5.6 5 3 2 8 8 6 0 AAA domain HOOK PF05622.12 gi|302348755|ref|YP_003816393.1| - 0.034 12.3 54.1 0.046 11.9 8.4 2.7 1 1 1 2 2 2 0 HOOK protein GAS PF13851.6 gi|302348755|ref|YP_003816393.1| - 0.034 13.5 62.4 0.051 12.9 10.3 6.0 3 2 0 5 5 5 0 Growth-arrest specific micro-tubule binding DNA_ligase_ZBD PF03119.16 gi|302348755|ref|YP_003816393.1| - 0.035 14.1 0.2 0.17 11.9 0.2 2.3 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Spectrin PF00435.21 gi|302348755|ref|YP_003816393.1| - 0.046 14.2 34.7 0.11 13.0 0.5 6.9 2 2 3 6 6 6 0 Spectrin repeat Filament PF00038.21 gi|302348755|ref|YP_003816393.1| - 0.072 12.7 56.2 0.3 10.6 9.8 5.2 3 2 2 5 5 5 0 Intermediate filament protein DUF3584 PF12128.8 gi|302348755|ref|YP_003816393.1| - 0.1 10.1 52.0 7.1 4.0 17.4 4.6 3 2 0 3 3 3 0 Protein of unknown function (DUF3584) AAA_16 PF13191.6 gi|302348755|ref|YP_003816393.1| - 0.12 12.8 0.1 0.12 12.8 0.1 4.7 2 2 0 2 2 1 0 AAA ATPase domain Fez1 PF06818.15 gi|302348755|ref|YP_003816393.1| - 0.13 12.7 57.9 0.032 14.7 11.9 4.8 3 2 1 4 4 4 0 Fez1 FapA PF03961.13 gi|302348755|ref|YP_003816393.1| - 0.18 10.4 44.1 0.23 10.0 4.1 5.6 1 1 3 5 5 5 0 Flagellar Assembly Protein A DUF724 PF05266.14 gi|302348755|ref|YP_003816393.1| - 0.2 11.5 46.6 0.034 14.0 8.4 4.7 2 2 3 5 5 5 0 Protein of unknown function (DUF724) zf-ribbon_3 PF13248.6 gi|302348755|ref|YP_003816393.1| - 0.28 10.7 1.2 0.35 10.4 0.3 1.6 2 0 0 2 2 1 0 zinc-ribbon domain DUF4201 PF13870.6 gi|302348755|ref|YP_003816393.1| - 0.29 10.9 47.4 0.82 9.4 0.8 5.5 4 2 1 5 5 5 0 Domain of unknown function (DUF4201) IFT57 PF10498.9 gi|302348755|ref|YP_003816393.1| - 0.38 9.7 29.7 0.55 9.1 3.9 4.3 3 1 0 4 4 4 0 Intra-flagellar transport protein 57 KASH_CCD PF14662.6 gi|302348755|ref|YP_003816393.1| - 0.58 9.9 51.0 0.43 10.4 9.2 4.8 4 2 0 4 4 4 0 Coiled-coil region of CCDC155 or KASH CREPT PF16566.5 gi|302348755|ref|YP_003816393.1| - 0.68 10.1 44.5 4.9 7.3 6.7 6.0 4 1 1 5 5 5 0 Cell-cycle alteration and expression-elevated protein in tumour Atg14 PF10186.9 gi|302348755|ref|YP_003816393.1| - 0.82 8.7 45.7 0.67 9.0 9.2 4.2 1 1 4 5 5 5 0 Vacuolar sorting 38 and autophagy-related subunit 14 CTU2 PF10288.9 gi|302348755|ref|YP_003816393.1| - 0.92 9.8 3.3 0.92 9.8 0.1 2.5 2 0 0 2 2 2 0 Cytoplasmic tRNA 2-thiolation protein 2 LPP PF04728.13 gi|302348755|ref|YP_003816393.1| - 0.94 9.9 28.9 0.81 10.1 2.2 8.2 8 1 0 8 8 7 0 Lipoprotein leucine-zipper TraF_2 PF13729.6 gi|302348755|ref|YP_003816393.1| - 0.96 8.8 5.2 2.5 7.4 0.1 3.4 3 2 0 3 3 3 0 F plasmid transfer operon, TraF, protein EzrA PF06160.12 gi|302348755|ref|YP_003816393.1| - 1.1 7.4 42.0 0.37 8.9 7.7 4.6 2 2 2 4 4 4 0 Septation ring formation regulator, EzrA DUF2730 PF10805.8 gi|302348755|ref|YP_003816393.1| - 1.9 8.6 30.6 4 7.6 0.4 6.5 3 2 4 7 7 7 0 Protein of unknown function (DUF2730) Occludin_ELL PF07303.13 gi|302348755|ref|YP_003816393.1| - 2 9.2 31.5 7.9 7.3 0.1 7.7 3 2 3 7 7 7 0 Occludin homology domain NAS PF03059.16 gi|302348755|ref|YP_003816393.1| - 2.3 7.5 9.8 3.7 6.8 1.3 3.8 5 0 0 5 5 4 0 Nicotianamine synthase protein YlqD PF11068.8 gi|302348755|ref|YP_003816393.1| - 2.5 8.5 31.6 3.5 8.0 1.8 5.4 4 2 1 5 5 4 0 YlqD protein PilJ PF13675.6 gi|302348755|ref|YP_003816393.1| - 2.6 8.1 24.3 0.8 9.7 2.4 5.4 5 1 1 6 6 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term Exonuc_VII_L PF02601.15 gi|302348755|ref|YP_003816393.1| - 3.4 7.1 40.5 23 4.4 7.0 3.9 1 1 0 2 2 1 0 Exonuclease VII, large subunit HemX PF04375.14 gi|302348755|ref|YP_003816393.1| - 3.6 6.8 36.8 1.4 8.1 6.3 5.3 3 2 0 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase AAA_22 PF13401.6 gi|302348755|ref|YP_003816393.1| - 4.1 7.7 7.1 2.5 8.4 0.0 4.1 4 2 1 5 5 3 0 AAA domain STAT_alpha PF01017.20 gi|302348755|ref|YP_003816393.1| - 4.4 7.2 24.5 6.6 6.6 0.6 5.4 2 1 1 4 4 4 0 STAT protein, all-alpha domain FlxA PF14282.6 gi|302348755|ref|YP_003816393.1| - 5.7 7.0 27.5 0.68 10.0 2.6 5.7 4 3 0 4 4 4 0 FlxA-like protein DUF3090 PF11290.8 gi|302348755|ref|YP_003816393.1| - 5.8 6.7 7.7 0.71 9.7 0.1 3.2 3 1 1 4 4 3 0 Protein of unknown function (DUF3090) CorA PF01544.18 gi|302348755|ref|YP_003816393.1| - 6 6.1 31.5 1.1 8.5 3.4 4.8 1 1 4 6 6 6 0 CorA-like Mg2+ transporter protein DivIC PF04977.15 gi|302348755|ref|YP_003816393.1| - 6.8 6.5 49.1 0.93 9.3 1.0 8.4 4 3 3 8 8 8 0 Septum formation initiator V_ATPase_I PF01496.19 gi|302348755|ref|YP_003816393.1| - 7.8 4.3 30.0 0.2 9.6 2.8 3.8 1 1 0 3 3 3 0 V-type ATPase 116kDa subunit family Metallophos_2 PF12850.7 gi|302348756|ref|YP_003816394.1| - 9.1e-09 35.7 0.0 2.9e-08 34.1 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|302348756|ref|YP_003816394.1| - 1.5e-08 35.4 0.0 2.5e-08 34.7 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase OMPdecase PF00215.24 gi|302348757|ref|YP_003816395.1| - 5.4e-22 78.5 4.3 9.2e-22 77.7 4.3 1.6 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.21 gi|302348757|ref|YP_003816395.1| - 0.0001 21.8 0.4 0.00021 20.8 0.3 1.6 1 1 0 1 1 1 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.19 gi|302348757|ref|YP_003816395.1| - 0.00031 20.2 1.0 0.00073 19.0 1.0 1.7 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family ThiG PF05690.14 gi|302348757|ref|YP_003816395.1| - 0.00074 18.9 5.2 0.00074 18.9 5.2 2.0 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|302348757|ref|YP_003816395.1| - 0.0014 17.5 1.4 0.0027 16.6 1.3 1.5 1 1 0 1 1 1 1 Tryptophan synthase alpha chain QRPTase_C PF01729.19 gi|302348757|ref|YP_003816395.1| - 0.0028 17.5 0.8 0.013 15.3 0.8 1.8 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain IGPS PF00218.21 gi|302348757|ref|YP_003816395.1| - 0.003 16.8 0.1 0.0053 16.0 0.1 1.4 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase 4HFCP_synth PF04476.13 gi|302348757|ref|YP_003816395.1| - 0.005 16.6 1.1 0.0089 15.8 1.1 1.5 1 1 0 1 1 1 1 4-HFC-P synthase PEP_mutase PF13714.6 gi|302348757|ref|YP_003816395.1| - 0.0052 16.3 2.7 0.1 12.1 0.9 2.1 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase ADH_zinc_N PF00107.26 gi|302348757|ref|YP_003816395.1| - 0.015 15.3 2.5 0.027 14.4 1.6 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Oxidored_FMN PF00724.20 gi|302348757|ref|YP_003816395.1| - 0.024 13.9 0.0 0.031 13.5 0.0 1.2 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family TMP-TENI PF02581.17 gi|302348757|ref|YP_003816395.1| - 0.026 13.9 2.1 0.033 13.5 1.1 1.7 1 1 0 1 1 1 0 Thiamine monophosphate synthase PEP_hydrolase PF09370.10 gi|302348757|ref|YP_003816395.1| - 0.091 12.0 3.7 1.6 7.9 0.1 2.7 1 1 1 3 3 3 0 Phosphoenolpyruvate hydrolase-like VATC PF18716.1 gi|302348758|ref|YP_003816396.1| - 0.11 12.4 0.4 0.15 11.9 0.4 1.2 1 0 0 1 1 1 0 Vms1-associating treble clef domain Lactamase_B PF00753.27 gi|302348759|ref|YP_003816397.1| - 2.5e-09 37.4 1.7 4.7e-09 36.5 1.7 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|302348759|ref|YP_003816397.1| - 0.096 12.2 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain tRNA_anti-codon PF01336.25 gi|302348760|ref|YP_003816398.1| - 9.5e-08 31.9 0.2 1.3e-07 31.5 0.2 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|302348760|ref|YP_003816398.1| - 0.00024 21.0 0.1 0.00033 20.5 0.1 1.2 1 0 0 1 1 1 1 Replication protein A OB domain ParBc PF02195.18 gi|302348761|ref|YP_003816399.1| - 4.1e-06 27.0 0.7 5.7e-06 26.5 0.0 1.6 2 0 0 2 2 2 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|302348761|ref|YP_003816399.1| - 0.042 12.7 0.0 1.6 7.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1015) CBS PF00571.28 gi|302348762|ref|YP_003816400.1| - 4e-31 107.2 4.0 3.4e-15 56.2 2.3 2.1 2 0 0 2 2 2 2 CBS domain Mut7-C PF01927.16 gi|302348763|ref|YP_003816401.1| - 3e-43 147.4 0.0 3.6e-43 147.2 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|302348763|ref|YP_003816401.1| - 3.8e-05 23.4 0.0 6.5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_9 PF18477.1 gi|302348763|ref|YP_003816401.1| - 0.023 15.0 0.0 0.051 13.9 0.0 1.6 1 1 0 1 1 1 0 PIN like domain Zn-ribbon_8 PF09723.10 gi|302348763|ref|YP_003816401.1| - 0.024 14.8 0.8 2.9 8.1 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain PIN PF01850.21 gi|302348763|ref|YP_003816401.1| - 0.04 14.4 0.0 0.084 13.4 0.0 1.6 1 0 0 1 1 1 0 PIN domain RNase_Zc3h12a PF11977.8 gi|302348763|ref|YP_003816401.1| - 0.12 12.2 0.1 0.24 11.1 0.1 1.5 1 1 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain TF_Zn_Ribbon PF08271.12 gi|302348763|ref|YP_003816401.1| - 0.14 11.7 2.0 8.4 6.0 0.2 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding TackOD1 PF18551.1 gi|302348763|ref|YP_003816401.1| - 0.18 11.5 0.0 1.3 8.7 0.0 1.9 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 Zn_ribbon_SprT PF17283.2 gi|302348763|ref|YP_003816401.1| - 0.2 11.6 1.6 9.1 6.3 0.0 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-RRN7 PF11781.8 gi|302348763|ref|YP_003816401.1| - 2.6 7.8 7.2 14 5.5 3.2 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TFIIS_C PF01096.18 gi|302348763|ref|YP_003816401.1| - 7.7 6.5 7.1 0.38 10.7 1.4 1.7 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PAP2 PF01569.21 gi|302348764|ref|YP_003816402.1| - 1.6e-19 70.0 5.2 1.6e-19 70.0 5.2 1.8 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|302348764|ref|YP_003816402.1| - 2.3e-06 27.4 14.2 1.9e-05 24.5 14.3 2.1 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|302348764|ref|YP_003816402.1| - 0.0018 18.8 3.5 0.0018 18.8 3.5 2.2 2 1 0 2 2 2 1 PAP2 superfamily C-terminal DUF212 PF02681.14 gi|302348764|ref|YP_003816402.1| - 1 9.5 6.7 2.6 8.2 0.2 2.6 2 1 1 3 3 3 0 Divergent PAP2 family DHO_dh PF01180.21 gi|302348765|ref|YP_003816403.1| - 1.2e-50 172.4 0.0 1.4e-50 172.2 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|302348765|ref|YP_003816403.1| - 8.7e-09 34.9 1.1 3.4e-07 29.7 0.2 2.0 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|302348765|ref|YP_003816403.1| - 0.0002 20.9 0.9 0.12 11.8 0.0 2.3 2 0 0 2 2 2 2 Histidine biosynthesis protein SOR_SNZ PF01680.17 gi|302348765|ref|YP_003816403.1| - 0.0064 16.3 1.2 0.012 15.4 1.2 1.4 1 0 0 1 1 1 1 SOR/SNZ family DUF561 PF04481.12 gi|302348765|ref|YP_003816403.1| - 0.0099 15.1 1.9 0.13 11.5 0.2 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF561) FMN_dh PF01070.18 gi|302348765|ref|YP_003816403.1| - 0.095 11.7 5.6 1.1 8.2 5.6 2.4 1 1 0 1 1 1 0 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|302348765|ref|YP_003816403.1| - 0.1 11.6 2.3 0.17 10.8 0.1 2.3 2 1 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain AP_endonuc_2 PF01261.24 gi|302348765|ref|YP_003816403.1| - 0.14 11.5 0.0 0.36 10.2 0.0 1.7 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel NMO PF03060.15 gi|302348765|ref|YP_003816403.1| - 0.28 10.5 8.6 0.25 10.7 0.4 2.8 3 0 0 3 3 3 0 Nitronate monooxygenase Amidohydro_1 PF01979.20 gi|302348766|ref|YP_003816404.1| - 2.9e-19 69.6 0.0 2.4e-09 37.0 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|302348766|ref|YP_003816404.1| - 1.7e-11 44.3 0.0 1.6e-07 31.2 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family PyrI PF01948.18 gi|302348767|ref|YP_003816405.1| - 1.3e-31 108.7 1.3 1.6e-31 108.4 1.3 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|302348767|ref|YP_003816405.1| - 1e-17 63.7 0.0 1.8e-17 63.0 0.0 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain PriA_CRR PF18319.1 gi|302348767|ref|YP_003816405.1| - 0.013 15.5 1.0 0.015 15.3 0.2 1.5 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain OTCace_N PF02729.21 gi|302348768|ref|YP_003816406.1| - 3.8e-47 160.0 0.0 5.7e-47 159.5 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|302348768|ref|YP_003816406.1| - 3.9e-23 82.3 0.0 5.7e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Pribosyltran PF00156.27 gi|302348769|ref|YP_003816407.1| - 1.6e-16 60.2 0.2 2.7e-16 59.5 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Ost4 PF10215.9 gi|302348769|ref|YP_003816407.1| - 0.028 14.2 0.1 0.08 12.8 0.1 1.8 1 0 0 1 1 1 0 Oligosaccaryltransferase UPRTase PF14681.6 gi|302348769|ref|YP_003816407.1| - 0.03 13.8 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase OMPdecase PF00215.24 gi|302348770|ref|YP_003816408.1| - 4.3e-29 101.7 0.0 5e-29 101.5 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Epimerase PF01370.21 gi|302348771|ref|YP_003816409.1| - 9.3e-16 58.0 0.0 1.5e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 gi|302348771|ref|YP_003816409.1| - 1.1e-09 37.9 0.1 1.3e-08 34.4 0.0 2.0 1 1 1 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.19 gi|302348771|ref|YP_003816409.1| - 1.1e-09 37.8 0.0 1.4e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|302348771|ref|YP_003816409.1| - 0.0004 20.3 0.1 0.00071 19.5 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|302348771|ref|YP_003816409.1| - 0.0011 18.1 0.0 0.0028 16.8 0.0 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain TrkA_N PF02254.18 gi|302348771|ref|YP_003816409.1| - 0.012 15.8 0.1 0.11 12.8 0.1 2.3 2 0 0 2 2 2 0 TrkA-N domain Pyr_redox PF00070.27 gi|302348771|ref|YP_003816409.1| - 0.036 14.6 0.3 0.078 13.5 0.3 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GDP_Man_Dehyd PF16363.5 gi|302348771|ref|YP_003816409.1| - 0.1 12.0 0.1 1.2 8.5 0.1 2.0 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase MR_MLE_C PF13378.6 gi|302348772|ref|YP_003816410.1| - 4.3e-35 121.3 0.0 5.6e-35 120.9 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|302348772|ref|YP_003816410.1| - 3.1e-15 56.4 0.0 8.4e-15 55.0 0.0 1.7 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Acetyltransf_1 PF00583.25 gi|302348773|ref|YP_003816411.1| - 0.076 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Aldo_ket_red PF00248.21 gi|302348774|ref|YP_003816412.1| - 4.7e-55 186.9 0.0 5.4e-55 186.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Pyridoxal_deC PF00282.19 gi|302348775|ref|YP_003816413.1| - 1.9e-28 99.3 0.0 2.4e-27 95.6 0.0 2.1 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|302348775|ref|YP_003816413.1| - 9e-08 31.4 0.0 6.3e-07 28.7 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|302348775|ref|YP_003816413.1| - 6.7e-06 25.5 0.0 0.067 12.4 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|302348775|ref|YP_003816413.1| - 0.0042 16.4 0.0 0.0062 15.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|302348775|ref|YP_003816413.1| - 0.078 11.7 0.0 0.12 11.1 0.0 1.3 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Thump_like PF18096.1 gi|302348775|ref|YP_003816413.1| - 0.14 12.1 0.0 0.41 10.6 0.0 1.7 2 0 0 2 2 2 0 THUMP domain-like malic PF00390.19 gi|302348776|ref|YP_003816414.1| - 4.9e-22 78.6 0.1 4.5e-15 55.9 0.0 2.7 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|302348776|ref|YP_003816414.1| - 1.9e-20 73.3 0.3 4.8e-19 68.7 0.3 2.3 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain Transp_cyt_pur PF02133.15 gi|302348777|ref|YP_003816415.1| - 3.7e-64 217.1 51.9 5.5e-64 216.6 51.9 1.3 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin Cupin_2 PF07883.11 gi|302348778|ref|YP_003816416.1| - 1.2e-17 63.4 0.1 1.6e-17 63.0 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|302348778|ref|YP_003816416.1| - 2e-08 34.2 0.0 3e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|302348778|ref|YP_003816416.1| - 4.8e-08 32.7 0.0 5.9e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|302348778|ref|YP_003816416.1| - 9.1e-05 22.4 0.0 0.00011 22.1 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.8 gi|302348778|ref|YP_003816416.1| - 0.0014 18.8 0.0 0.0018 18.5 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_3 PF05899.12 gi|302348778|ref|YP_003816416.1| - 0.0032 17.1 0.1 0.0065 16.1 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_7 PF12973.7 gi|302348778|ref|YP_003816416.1| - 0.01 15.7 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Ectoine_synth PF06339.12 gi|302348778|ref|YP_003816416.1| - 0.024 14.8 0.0 0.028 14.6 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase EutQ PF06249.12 gi|302348778|ref|YP_003816416.1| - 0.05 13.4 0.0 0.051 13.3 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ DMSP_lyase PF16867.5 gi|302348778|ref|YP_003816416.1| - 0.073 12.7 0.0 0.086 12.5 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Sigma_reg_N PF13800.6 gi|302348779|ref|YP_003816417.1| - 0.33 11.3 5.2 6.4 7.1 3.8 2.5 2 0 0 2 2 2 0 Sigma factor regulator N-terminal AWPM-19 PF05512.11 gi|302348779|ref|YP_003816417.1| - 1.3 9.2 5.6 0.69 10.1 3.2 1.7 2 0 0 2 2 2 0 AWPM-19-like family DUF2749 PF10907.8 gi|302348779|ref|YP_003816417.1| - 1.9 8.7 3.9 4.4 7.6 3.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) Mucin PF01456.17 gi|302348779|ref|YP_003816417.1| - 9.7 6.2 26.1 18 5.3 26.1 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein BPD_transp_1 PF00528.22 gi|302348780|ref|YP_003816418.1| - 6.4e-08 32.6 35.4 5e-06 26.4 35.4 2.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF4519 PF15012.6 gi|302348780|ref|YP_003816418.1| - 0.2 11.8 0.0 0.84 9.9 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) BPD_transp_1 PF00528.22 gi|302348781|ref|YP_003816419.1| - 1.9e-19 70.1 17.7 1.9e-19 70.1 17.7 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|302348782|ref|YP_003816420.1| - 2.8e-30 105.6 0.0 4.3e-30 105.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter GlcV_C_terminal PF17847.1 gi|302348782|ref|YP_003816420.1| - 3.4e-18 65.9 0.3 7.4e-18 64.8 0.3 1.6 1 0 0 1 1 1 1 Glucose ABC transporter C-terminal domain AAA_21 PF13304.6 gi|302348782|ref|YP_003816420.1| - 6.3e-05 22.9 0.0 0.027 14.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 gi|302348782|ref|YP_003816420.1| - 0.012 16.5 0.0 0.25 12.2 0.0 2.8 2 0 0 2 2 2 0 MalK OB fold domain SbcCD_C PF13558.6 gi|302348782|ref|YP_003816420.1| - 0.012 15.8 0.2 0.046 14.0 0.2 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase PF06745.13 gi|302348782|ref|YP_003816420.1| - 0.036 13.4 0.1 5.1 6.4 0.0 2.3 2 0 0 2 2 2 0 KaiC CysA_C_terminal PF17850.1 gi|302348782|ref|YP_003816420.1| - 0.07 13.7 0.0 0.33 11.6 0.0 2.3 3 0 0 3 3 3 0 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|302348782|ref|YP_003816420.1| - 0.098 12.8 0.0 0.46 10.7 0.0 2.1 2 0 0 2 2 2 0 TOBE domain ATPase PF06745.13 gi|302348783|ref|YP_003816421.1| - 5.5e-86 287.7 0.1 6.8e-86 287.4 0.1 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|302348783|ref|YP_003816421.1| - 2.5e-07 30.5 0.0 3.9e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|302348783|ref|YP_003816421.1| - 4.6e-05 22.2 0.0 6e-05 21.8 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.6 gi|302348783|ref|YP_003816421.1| - 0.00031 20.8 0.0 0.0007 19.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|302348783|ref|YP_003816421.1| - 0.0072 15.6 0.2 0.011 15.0 0.2 1.5 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) MEDS PF14417.6 gi|302348783|ref|YP_003816421.1| - 0.0078 16.1 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_22 PF13401.6 gi|302348783|ref|YP_003816421.1| - 0.012 15.9 0.0 0.023 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|302348783|ref|YP_003816421.1| - 0.015 14.7 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Rad51 PF08423.11 gi|302348783|ref|YP_003816421.1| - 0.02 14.1 0.1 0.25 10.6 0.0 2.0 2 0 0 2 2 2 0 Rad51 N6_N4_Mtase PF01555.18 gi|302348783|ref|YP_003816421.1| - 0.021 14.6 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 DNA methylase AAA_24 PF13479.6 gi|302348783|ref|YP_003816421.1| - 0.026 14.3 0.1 0.093 12.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|302348783|ref|YP_003816421.1| - 0.045 14.2 0.5 15 6.0 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.6 gi|302348783|ref|YP_003816421.1| - 0.077 13.3 0.3 0.3 11.4 0.1 2.0 3 0 0 3 3 3 0 AAA domain T2SSE PF00437.20 gi|302348783|ref|YP_003816421.1| - 0.08 12.0 0.0 0.18 10.9 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|302348783|ref|YP_003816421.1| - 0.13 12.7 0.0 0.28 11.5 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ASCH PF04266.14 gi|302348784|ref|YP_003816422.1| - 3.4e-16 59.7 0.0 5.3e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 ASCH domain DUF1859 PF08948.10 gi|302348784|ref|YP_003816422.1| - 0.19 11.7 0.0 0.26 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1859) Pro-kuma_activ PF09286.11 gi|302348785|ref|YP_003816423.1| - 8.2e-20 71.6 0.0 1.5e-19 70.7 0.0 1.4 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|302348785|ref|YP_003816423.1| - 2.7e-06 26.9 0.3 5e-06 26.0 0.3 1.3 1 0 0 1 1 1 1 Subtilase family Thioredoxin PF00085.20 gi|302348787|ref|YP_003816425.1| - 3.2e-26 91.3 0.0 4.7e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|302348787|ref|YP_003816425.1| - 2.1e-08 34.6 0.1 9.9e-08 32.4 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|302348787|ref|YP_003816425.1| - 0.0007 19.9 0.0 0.0019 18.5 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|302348787|ref|YP_003816425.1| - 0.00089 19.0 0.7 0.0013 18.5 0.1 1.6 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|302348787|ref|YP_003816425.1| - 0.0047 16.9 0.0 0.0081 16.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.10 gi|302348787|ref|YP_003816425.1| - 0.035 13.8 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Redoxin OST3_OST6 PF04756.13 gi|302348787|ref|YP_003816425.1| - 0.072 12.4 0.0 0.18 11.1 0.0 1.6 1 1 0 1 1 1 0 OST3 / OST6 family, transporter family AdoMet_dc PF02675.15 gi|302348788|ref|YP_003816426.1| - 2.1e-31 108.3 0.1 2.5e-31 108.1 0.1 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase UPF0122 PF04297.14 gi|302348788|ref|YP_003816426.1| - 0.097 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Lactamase_B_2 PF12706.7 gi|302348789|ref|YP_003816427.1| - 1.1e-07 31.6 0.1 4e-07 29.7 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|302348789|ref|YP_003816427.1| - 1e-06 28.9 0.0 1.7e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily PTH2 PF01981.16 gi|302348790|ref|YP_003816428.1| - 1.8e-43 147.6 0.1 2e-43 147.4 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF2396 PF09654.10 gi|302348790|ref|YP_003816428.1| - 0.027 14.6 0.0 0.032 14.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) PNP_UDP_1 PF01048.20 gi|302348792|ref|YP_003816430.1| - 2.5e-47 161.1 0.1 2.9e-47 160.9 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF2977 PF11192.8 gi|302348792|ref|YP_003816430.1| - 0.0013 18.8 0.0 0.0029 17.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2977) HEAT_EZ PF13513.6 gi|302348792|ref|YP_003816430.1| - 0.2 12.2 0.5 0.6 10.7 0.1 2.0 2 0 0 2 2 2 0 HEAT-like repeat MoCF_biosynth PF00994.24 gi|302348793|ref|YP_003816431.1| - 1.7e-31 108.8 0.0 1.9e-31 108.6 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain GATase PF00117.28 gi|302348793|ref|YP_003816431.1| - 0.071 12.9 0.0 0.15 11.8 0.0 1.5 2 0 0 2 2 2 0 Glutamine amidotransferase class-I AMP-binding PF00501.28 gi|302348795|ref|YP_003816433.1| - 4.7e-75 252.8 0.0 6e-75 252.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|302348795|ref|YP_003816433.1| - 4.1e-29 101.4 1.5 1e-28 100.1 1.5 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|302348795|ref|YP_003816433.1| - 5e-11 42.3 1.5 1.4e-10 40.9 1.5 1.8 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus PALP PF00291.25 gi|302348796|ref|YP_003816434.1| - 2.1e-16 60.2 0.1 4.3e-07 29.6 0.0 2.9 1 1 2 3 3 3 2 Pyridoxal-phosphate dependent enzyme PadR PF03551.14 gi|302348796|ref|YP_003816434.1| - 0.087 12.8 0.2 0.3 11.1 0.0 2.0 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family DUF2258 PF10015.9 gi|302348797|ref|YP_003816435.1| - 7.8e-25 86.8 2.0 7.8e-25 86.8 2.0 1.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) Chibby PF14645.6 gi|302348797|ref|YP_003816435.1| - 0.0019 18.6 0.3 0.003 18.0 0.3 1.2 1 0 0 1 1 1 1 Chibby family DUF4709 PF15821.5 gi|302348797|ref|YP_003816435.1| - 0.0041 17.4 0.5 0.01 16.1 0.5 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4709) bZIP_1 PF00170.21 gi|302348797|ref|YP_003816435.1| - 0.012 15.7 6.6 0.012 15.7 6.6 1.7 2 0 0 2 2 2 0 bZIP transcription factor RasGAP_C PF03836.15 gi|302348797|ref|YP_003816435.1| - 0.017 15.3 2.1 0.03 14.5 2.1 1.4 1 0 0 1 1 1 0 RasGAP C-terminus Csm1_N PF18504.1 gi|302348797|ref|YP_003816435.1| - 0.06 13.7 4.4 0.14 12.5 4.4 1.6 1 0 0 1 1 1 0 Csm1 N-terminal domain FAM180 PF15173.6 gi|302348797|ref|YP_003816435.1| - 0.07 13.1 1.1 8.7 6.3 0.1 2.1 1 1 0 2 2 2 0 FAM180 family FlaC_arch PF05377.11 gi|302348797|ref|YP_003816435.1| - 0.095 13.1 3.0 0.21 12.0 3.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Fungal_TACC PF12709.7 gi|302348797|ref|YP_003816435.1| - 0.16 12.5 7.1 5.4 7.5 0.1 2.5 2 1 0 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins Spc24 PF08286.11 gi|302348797|ref|YP_003816435.1| - 0.21 11.9 4.9 0.44 10.8 4.9 1.6 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 YabA PF06156.13 gi|302348797|ref|YP_003816435.1| - 0.52 11.0 5.1 0.5 11.0 3.8 1.7 1 1 1 2 2 2 0 Initiation control protein YabA DivIC PF04977.15 gi|302348797|ref|YP_003816435.1| - 2.4 8.0 7.7 0.99 9.2 5.1 1.7 2 0 0 2 2 2 0 Septum formation initiator Nitro_FeMo-Co PF02579.17 gi|302348798|ref|YP_003816436.1| - 3.3e-06 27.3 0.1 5.1e-06 26.7 0.1 1.4 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor AdoMet_dc PF02675.15 gi|302348799|ref|YP_003816437.1| - 4.8e-31 107.1 0.0 5.8e-31 106.9 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Ribosomal_S2 PF00318.20 gi|302348801|ref|YP_003816439.1| - 1.4e-20 73.5 0.0 4.9e-15 55.4 0.1 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 RNA_pol_N PF01194.17 gi|302348802|ref|YP_003816440.1| - 4.4e-18 65.3 0.0 5.2e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|302348803|ref|YP_003816441.1| - 3.3e-30 105.1 0.1 4e-30 104.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 PDZ PF00595.24 gi|302348803|ref|YP_003816441.1| - 0.034 14.5 0.1 0.056 13.8 0.1 1.3 1 0 0 1 1 1 0 PDZ domain IML1 PF12257.8 gi|302348803|ref|YP_003816441.1| - 0.13 11.4 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Vacuolar membrane-associated protein Iml1 Ribosomal_L13 PF00572.18 gi|302348804|ref|YP_003816442.1| - 2.8e-14 53.5 0.3 3.4e-12 46.7 0.3 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L27A PF00828.19 gi|302348805|ref|YP_003816443.1| - 1e-08 35.9 0.3 2.6e-08 34.6 0.3 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|302348805|ref|YP_003816443.1| - 8e-07 28.6 0.1 9.5e-07 28.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e RNA_pol_A_bac PF01000.26 gi|302348806|ref|YP_003816444.1| - 6.9e-25 87.6 0.0 2e-24 86.1 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|302348806|ref|YP_003816444.1| - 2.1e-15 55.9 0.0 2.7e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 gi|302348807|ref|YP_003816445.1| - 4.5e-48 162.2 3.7 5.7e-48 161.9 3.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|302348808|ref|YP_003816446.1| - 3.6e-18 65.0 0.7 7.9e-18 63.9 0.2 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|302348808|ref|YP_003816446.1| - 0.0009 20.1 0.1 0.0024 18.7 0.0 1.8 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.22 gi|302348809|ref|YP_003816447.1| - 5.4e-40 136.7 0.1 6.4e-40 136.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.6 gi|302348809|ref|YP_003816447.1| - 0.045 14.4 0.5 0.088 13.4 0.1 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_4 PF14490.6 gi|302348809|ref|YP_003816447.1| - 0.082 12.9 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain HHH_6 PF14579.6 gi|302348809|ref|YP_003816447.1| - 0.09 13.1 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif Ribosomal_L7Ae PF01248.26 gi|302348810|ref|YP_003816448.1| - 1.6e-30 104.7 0.3 2.1e-30 104.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|302348810|ref|YP_003816448.1| - 0.00032 20.5 0.1 0.00048 20.0 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|302348810|ref|YP_003816448.1| - 0.0013 18.8 0.0 0.0014 18.7 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 H_PPase PF03030.16 gi|302348811|ref|YP_003816449.1| - 2.7e-231 769.7 43.4 3.2e-231 769.5 43.4 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase DMAP_binding PF06464.11 gi|302348811|ref|YP_003816449.1| - 0.17 12.7 0.0 0.25 12.2 0.0 1.2 1 0 0 1 1 1 0 DMAP1-binding Domain Phage_holin_5_1 PF06946.11 gi|302348812|ref|YP_003816450.1| - 0.011 16.0 0.0 0.023 15.1 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage A118-like holin, Hol118 Ski2_N PF17911.1 gi|302348812|ref|YP_003816450.1| - 0.23 11.3 0.0 0.45 10.3 0.0 1.4 1 0 0 1 1 1 0 Ski2 N-terminal region Aldo_ket_red PF00248.21 gi|302348813|ref|YP_003816451.1| - 2.8e-36 125.2 0.0 5.7e-36 124.2 0.0 1.4 1 1 0 1 1 1 1 Aldo/keto reductase family Radical_SAM PF04055.21 gi|302348817|ref|YP_003816455.1| - 9.8e-22 78.1 0.0 1.7e-21 77.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|302348817|ref|YP_003816455.1| - 2e-16 60.1 0.0 3.1e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|302348817|ref|YP_003816455.1| - 0.0003 20.9 0.0 0.00068 19.8 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|302348817|ref|YP_003816455.1| - 0.01 16.1 0.0 0.03 14.6 0.0 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain GTP_EFTU_D2 PF03144.25 gi|302348818|ref|YP_003816456.1| - 0.098 13.1 0.1 0.21 12.0 0.1 1.5 1 0 0 1 1 1 0 Elongation factor Tu domain 2 DUF4147 PF13660.6 gi|302348819|ref|YP_003816457.1| - 4.9e-60 202.9 0.0 7.9e-60 202.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|302348819|ref|YP_003816457.1| - 3.8e-32 110.7 0.2 7.5e-32 109.8 0.2 1.5 1 0 0 1 1 1 1 MOFRL family Methyltr_RsmB-F PF01189.17 gi|302348820|ref|YP_003816458.1| - 4.4e-31 108.1 0.0 6.9e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|302348820|ref|YP_003816458.1| - 6.7e-13 48.4 4.6 1.2e-12 47.6 4.6 1.4 1 0 0 1 1 1 1 PUA domain FtsJ PF01728.19 gi|302348820|ref|YP_003816458.1| - 4.1e-06 27.0 0.0 2.3e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|302348820|ref|YP_003816458.1| - 5.9e-05 22.9 0.0 8.9e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|302348820|ref|YP_003816458.1| - 0.018 14.7 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_24 PF13578.6 gi|302348820|ref|YP_003816458.1| - 0.025 15.6 0.0 0.19 12.8 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain Cytochrom_D1 PF02239.16 gi|302348820|ref|YP_003816458.1| - 0.042 12.4 0.1 0.066 11.7 0.1 1.2 1 0 0 1 1 1 0 Cytochrome D1 heme domain Methyltr_RsmF_N PF17125.5 gi|302348820|ref|YP_003816458.1| - 0.063 13.8 0.0 5.2 7.6 0.0 2.3 2 0 0 2 2 2 0 N-terminal domain of 16S rRNA methyltransferase RsmF PCMT PF01135.19 gi|302348820|ref|YP_003816458.1| - 0.064 13.0 0.0 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltrans_SAM PF10672.9 gi|302348820|ref|YP_003816458.1| - 0.095 11.8 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Methyltransf_11 PF08241.12 gi|302348820|ref|YP_003816458.1| - 0.14 12.8 0.0 0.92 10.2 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|302348821|ref|YP_003816459.1| - 1e-46 159.2 0.0 2e-46 158.3 0.0 1.3 2 0 0 2 2 2 1 Met-10+ like-protein TRM PF02005.16 gi|302348821|ref|YP_003816459.1| - 1.8e-05 24.1 0.0 2.4e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|302348821|ref|YP_003816459.1| - 0.00033 20.2 0.0 0.00043 19.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|302348821|ref|YP_003816459.1| - 0.0011 18.5 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|302348821|ref|YP_003816459.1| - 0.0016 18.0 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|302348821|ref|YP_003816459.1| - 0.0021 18.0 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltrans_SAM PF10672.9 gi|302348821|ref|YP_003816459.1| - 0.015 14.4 0.0 0.031 13.4 0.0 1.4 2 0 0 2 2 2 0 S-adenosylmethionine-dependent methyltransferase DNA_primase_lrg PF04104.14 gi|302348822|ref|YP_003816460.1| - 2.1e-06 27.4 0.0 6.5e-06 25.7 0.0 1.9 2 1 0 2 2 2 1 Eukaryotic and archaeal DNA primase, large subunit MmgE_PrpD PF03972.14 gi|302348823|ref|YP_003816461.1| - 4.2e-126 421.0 0.0 4.8e-126 420.8 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Laminin_II PF06009.12 gi|302348824|ref|YP_003816462.1| - 0.072 13.1 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Laminin Domain II Bcr-Abl_Oligo PF09036.10 gi|302348824|ref|YP_003816462.1| - 0.19 11.7 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain CTP-dep_RFKase PF01982.16 gi|302348825|ref|YP_003816463.1| - 1.5e-33 115.4 0.0 2.1e-33 115.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 Pyr_redox_2 PF07992.14 gi|302348826|ref|YP_003816464.1| - 3.5e-60 203.7 0.1 4.2e-60 203.5 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|302348826|ref|YP_003816464.1| - 2.3e-26 92.2 2.4 4.1e-19 68.9 1.0 3.4 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|302348826|ref|YP_003816464.1| - 1e-13 51.3 0.0 1.7e-09 37.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|302348826|ref|YP_003816464.1| - 2.3e-12 47.2 3.1 0.042 13.4 0.0 4.1 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_dim PF02852.22 gi|302348826|ref|YP_003816464.1| - 2.7e-12 46.9 0.0 7.4e-12 45.5 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.14 gi|302348826|ref|YP_003816464.1| - 2.4e-11 43.0 2.9 0.0032 16.2 0.0 4.1 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 gi|302348826|ref|YP_003816464.1| - 3.2e-08 33.7 0.2 0.011 15.9 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|302348826|ref|YP_003816464.1| - 5.3e-08 32.4 4.1 0.0014 17.8 0.0 3.7 3 1 0 4 4 4 2 FAD binding domain Lycopene_cycl PF05834.12 gi|302348826|ref|YP_003816464.1| - 1.9e-07 30.5 1.7 0.015 14.3 0.4 3.1 3 0 0 3 3 3 2 Lycopene cyclase protein K_oxygenase PF13434.6 gi|302348826|ref|YP_003816464.1| - 1.2e-05 24.6 0.0 0.0001 21.6 0.0 2.1 2 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|302348826|ref|YP_003816464.1| - 1.3e-05 24.6 0.6 0.082 12.1 0.1 2.8 2 0 0 2 2 2 2 Thi4 family GIDA PF01134.22 gi|302348826|ref|YP_003816464.1| - 2.4e-05 23.6 1.7 0.079 12.0 0.3 3.2 3 1 1 4 4 4 2 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|302348826|ref|YP_003816464.1| - 3.2e-05 23.3 6.0 0.019 14.3 0.0 3.1 2 1 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|302348826|ref|YP_003816464.1| - 4.9e-05 23.6 0.6 0.12 12.7 0.3 2.6 2 0 0 2 2 2 2 TrkA-N domain NAD_binding_7 PF13241.6 gi|302348826|ref|YP_003816464.1| - 0.0001 22.7 0.4 0.02 15.3 0.1 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|302348826|ref|YP_003816464.1| - 0.0002 21.0 0.1 0.0047 16.5 0.2 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|302348826|ref|YP_003816464.1| - 0.00077 18.8 0.3 0.24 10.6 0.3 2.9 3 0 0 3 3 3 1 FAD binding domain NAD_binding_9 PF13454.6 gi|302348826|ref|YP_003816464.1| - 0.00086 19.3 0.2 5.4 7.0 0.1 3.3 3 0 0 3 3 3 1 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|302348826|ref|YP_003816464.1| - 0.0016 17.8 0.1 0.28 10.5 0.0 2.7 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|302348826|ref|YP_003816464.1| - 0.011 15.6 0.8 0.018 14.9 0.2 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.21 gi|302348826|ref|YP_003816464.1| - 0.014 14.8 0.7 0.068 12.5 0.1 2.1 2 0 0 2 2 2 0 ThiF family FAD_oxidored PF12831.7 gi|302348826|ref|YP_003816464.1| - 0.025 14.0 2.6 0.84 8.9 0.1 2.7 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_2 PF03446.15 gi|302348826|ref|YP_003816464.1| - 0.046 13.9 0.3 0.14 12.3 0.2 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1188 PF06690.11 gi|302348826|ref|YP_003816464.1| - 0.13 11.8 0.0 3.5 7.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) F420_oxidored PF03807.17 gi|302348826|ref|YP_003816464.1| - 0.21 12.2 1.2 15 6.2 0.0 2.8 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent tRNA_deacylase PF04414.12 gi|302348828|ref|YP_003816466.1| - 3.1e-63 213.0 0.0 3.7e-63 212.8 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase ECH_1 PF00378.20 gi|302348829|ref|YP_003816467.1| - 1.4e-71 240.7 0.0 3e-71 239.7 0.0 1.5 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|302348829|ref|YP_003816467.1| - 1.6e-61 207.3 0.5 3.5e-61 206.2 0.5 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|302348829|ref|YP_003816467.1| - 3.4e-53 178.2 0.2 5e-28 97.6 0.0 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|302348829|ref|YP_003816467.1| - 7.8e-45 153.8 0.2 2.6e-42 145.5 0.0 2.9 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|302348829|ref|YP_003816467.1| - 0.0001 22.5 1.5 0.0012 19.1 1.5 2.3 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|302348829|ref|YP_003816467.1| - 0.0022 17.3 0.1 0.0039 16.5 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|302348829|ref|YP_003816467.1| - 0.014 15.8 0.2 0.033 14.6 0.2 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|302348829|ref|YP_003816467.1| - 0.034 14.7 0.5 0.13 12.8 0.1 2.2 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|302348829|ref|YP_003816467.1| - 0.041 14.0 0.1 0.17 12.0 0.1 2.1 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|302348829|ref|YP_003816467.1| - 0.1 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|302348829|ref|YP_003816467.1| - 0.12 11.9 0.1 0.31 10.6 0.1 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.20 gi|302348829|ref|YP_003816467.1| - 1.7 8.8 3.5 94 3.1 3.3 3.1 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Cren7 PF11520.8 gi|302348831|ref|YP_003816469.1| - 5.8e-29 99.8 1.8 6e-29 99.7 1.8 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DUF2231 PF09990.9 gi|302348832|ref|YP_003816470.1| - 1.3 9.5 7.7 0.091 13.2 1.8 2.1 2 1 0 2 2 2 0 Predicted membrane protein (DUF2231) ACP_syn_III_C PF08541.10 gi|302348833|ref|YP_003816471.1| - 2.6e-10 40.3 0.0 1e-09 38.4 0.0 1.9 2 1 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|302348833|ref|YP_003816471.1| - 8.2e-06 25.4 0.1 2e-05 24.1 0.2 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|302348833|ref|YP_003816471.1| - 9.4e-06 25.4 1.0 1.9e-05 24.4 0.5 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.10 gi|302348833|ref|YP_003816471.1| - 0.0001 22.0 0.0 0.0059 16.3 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|302348834|ref|YP_003816472.1| - 1.9e-10 40.5 1.2 1.8e-09 37.3 1.2 2.1 1 1 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|302348834|ref|YP_003816472.1| - 1.1e-07 31.6 0.2 0.00037 20.3 0.1 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.26 gi|302348834|ref|YP_003816472.1| - 3.2e-07 30.2 0.2 3.6e-06 26.7 0.2 2.3 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|302348834|ref|YP_003816472.1| - 8e-07 28.7 1.2 1.1e-06 28.3 0.1 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain Chal_sti_synt_N PF00195.19 gi|302348834|ref|YP_003816472.1| - 0.028 13.8 0.1 0.061 12.7 0.1 1.5 2 0 0 2 2 2 0 Chalcone and stilbene synthases, N-terminal domain DUF35_N PF12172.8 gi|302348835|ref|YP_003816473.1| - 5.5e-12 45.3 3.2 5.5e-12 45.3 3.2 1.6 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|302348835|ref|YP_003816473.1| - 2.2e-11 43.6 0.1 3.2e-11 43.1 0.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated TackOD1 PF18551.1 gi|302348835|ref|YP_003816473.1| - 0.0031 17.2 0.1 0.0045 16.7 0.1 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 TF_Zn_Ribbon PF08271.12 gi|302348835|ref|YP_003816473.1| - 0.0055 16.2 0.3 0.16 11.5 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding HypA PF01155.19 gi|302348835|ref|YP_003816473.1| - 0.018 15.0 0.1 0.029 14.4 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|302348835|ref|YP_003816473.1| - 0.031 14.3 0.3 0.048 13.7 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|302348835|ref|YP_003816473.1| - 0.048 13.6 4.0 0.087 12.8 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|302348835|ref|YP_003816473.1| - 0.43 10.7 4.6 1.3 9.2 4.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|302348835|ref|YP_003816473.1| - 3 7.7 6.7 10 6.0 6.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|302348835|ref|YP_003816473.1| - 3.2 7.3 7.1 16 5.1 7.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain HMG-CoA_red PF00368.18 gi|302348836|ref|YP_003816474.1| - 9.4e-122 406.5 0.0 1.1e-121 406.4 0.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase NAD_binding_2 PF03446.15 gi|302348837|ref|YP_003816475.1| - 7.2e-35 120.5 0.1 9.9e-35 120.0 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|302348837|ref|YP_003816475.1| - 3.6e-23 82.1 0.0 5.4e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|302348837|ref|YP_003816475.1| - 6.2e-06 26.7 0.0 1.4e-05 25.5 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|302348837|ref|YP_003816475.1| - 1.4e-05 25.2 0.0 2.3e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|302348837|ref|YP_003816475.1| - 0.00018 22.3 0.0 0.00032 21.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|302348837|ref|YP_003816475.1| - 0.0011 18.4 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|302348837|ref|YP_003816475.1| - 0.0012 18.8 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|302348837|ref|YP_003816475.1| - 0.0053 16.4 0.9 0.0088 15.7 0.1 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 gi|302348837|ref|YP_003816475.1| - 0.041 13.7 0.2 0.074 12.9 0.2 1.4 1 0 0 1 1 1 0 Rossmann-like domain Acyl-CoA_dh_1 PF00441.24 gi|302348840|ref|YP_003816478.1| - 2.5e-30 105.6 2.3 3.9e-30 105.1 2.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|302348840|ref|YP_003816478.1| - 1.7e-25 89.9 0.0 6.2e-25 88.0 0.0 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|302348840|ref|YP_003816478.1| - 1.6e-14 54.3 2.1 2.6e-14 53.7 2.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|302348840|ref|YP_003816478.1| - 3.5e-11 43.1 0.0 6.2e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Fe-ADH PF00465.19 gi|302348841|ref|YP_003816479.1| - 2.9e-80 269.8 0.0 3.5e-80 269.6 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|302348841|ref|YP_003816479.1| - 6.2e-07 29.4 0.1 2.2e-06 27.5 0.1 1.7 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase Elf1 PF05129.13 gi|302348842|ref|YP_003816480.1| - 1.6e-17 63.3 1.8 2.1e-17 62.9 1.8 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like FdhE PF04216.12 gi|302348842|ref|YP_003816480.1| - 0.0098 15.8 0.3 0.011 15.6 0.3 1.2 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zf-ACC PF17848.1 gi|302348842|ref|YP_003816480.1| - 0.023 14.7 0.0 0.059 13.5 0.0 1.7 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain zf-TFIIB PF13453.6 gi|302348842|ref|YP_003816480.1| - 0.037 13.3 0.6 0.075 12.4 0.6 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger Mu-like_Com PF10122.9 gi|302348842|ref|YP_003816480.1| - 0.095 12.2 2.3 2.5 7.6 0.0 2.6 2 0 0 2 2 2 0 Mu-like prophage protein Com Fer4_4 PF12800.7 gi|302348842|ref|YP_003816480.1| - 0.64 10.7 4.2 0.89 10.2 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain PcrB PF01884.17 gi|302348843|ref|YP_003816481.1| - 8.3e-53 179.2 0.0 1.1e-52 178.8 0.0 1.0 1 0 0 1 1 1 1 PcrB family NanE PF04131.14 gi|302348843|ref|YP_003816481.1| - 0.00054 19.2 0.1 0.024 13.8 0.0 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|302348843|ref|YP_003816481.1| - 0.0011 18.5 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.19 gi|302348843|ref|YP_003816481.1| - 0.0043 16.5 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family NBD_C PF17042.5 gi|302348843|ref|YP_003816481.1| - 0.055 14.0 0.7 10 6.6 0.1 2.5 2 1 0 2 2 2 0 Nucleotide-binding C-terminal domain PucR PF07905.11 gi|302348843|ref|YP_003816481.1| - 0.059 13.7 0.0 0.26 11.6 0.0 1.9 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family MazG PF03819.17 gi|302348844|ref|YP_003816482.1| - 9e-10 38.6 0.1 1.3e-09 38.0 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|302348844|ref|YP_003816482.1| - 3.1e-06 27.4 0.0 4.2e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|302348844|ref|YP_003816482.1| - 0.00081 19.8 0.1 0.00094 19.6 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Sec61_beta PF03911.16 gi|302348845|ref|YP_003816483.1| - 6.6e-10 38.9 2.3 7.6e-10 38.7 2.3 1.1 1 0 0 1 1 1 1 Sec61beta family TPPK_C PF12555.8 gi|302348845|ref|YP_003816483.1| - 0.014 15.4 0.8 0.15 12.1 0.8 1.9 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal SWIM PF04434.17 gi|302348846|ref|YP_003816484.1| - 0.0012 18.5 0.1 0.002 17.8 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger TP6A_N PF04406.14 gi|302348846|ref|YP_003816484.1| - 0.015 15.3 0.1 0.028 14.4 0.1 1.3 1 0 0 1 1 1 0 Type IIB DNA topoisomerase Ogr_Delta PF04606.12 gi|302348846|ref|YP_003816484.1| - 0.041 13.9 0.0 0.075 13.0 0.0 1.4 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger Rib_5-P_isom_A PF06026.14 gi|302348847|ref|YP_003816485.1| - 1.8e-46 157.9 0.0 2.2e-46 157.6 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LUD_dom PF02589.15 gi|302348847|ref|YP_003816485.1| - 0.029 14.1 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 LUD domain TatD_DNase PF01026.21 gi|302348848|ref|YP_003816486.1| - 6.5e-12 45.4 0.0 7.6e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase VWA_2 PF13519.6 gi|302348849|ref|YP_003816487.1| - 1.3e-10 41.9 0.2 1.8e-08 35.0 0.0 3.0 2 1 1 3 3 3 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|302348849|ref|YP_003816487.1| - 3.7e-09 36.3 0.0 6.5e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|302348849|ref|YP_003816487.1| - 3.1e-07 30.8 0.4 9.7e-07 29.2 0.1 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain Glyco_tranf_2_3 PF13641.6 gi|302348849|ref|YP_003816487.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 AAA_5 PF07728.14 gi|302348850|ref|YP_003816488.1| - 1.6e-27 96.2 0.1 1e-26 93.6 0.0 2.3 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|302348850|ref|YP_003816488.1| - 4.4e-09 36.1 1.0 8.6e-09 35.2 0.1 2.0 2 0 0 2 2 2 1 AAA lid domain AAA_3 PF07726.11 gi|302348850|ref|YP_003816488.1| - 2.3e-06 27.5 0.0 4.9e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|302348850|ref|YP_003816488.1| - 7.2e-05 23.2 0.2 0.00055 20.4 0.0 2.6 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|302348850|ref|YP_003816488.1| - 0.0012 19.1 0.1 0.0085 16.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|302348850|ref|YP_003816488.1| - 0.0018 18.7 0.1 0.0064 16.9 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|302348850|ref|YP_003816488.1| - 0.0021 17.5 0.0 0.0099 15.3 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|302348850|ref|YP_003816488.1| - 0.0031 16.6 0.0 0.048 12.8 0.0 2.3 2 0 0 2 2 2 1 MCM P-loop domain PLU-1 PF08429.11 gi|302348850|ref|YP_003816488.1| - 0.0041 16.4 1.5 0.0048 16.1 1.5 1.3 1 0 0 1 1 1 1 PLU-1-like protein AAA_7 PF12775.7 gi|302348850|ref|YP_003816488.1| - 0.015 14.8 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|302348850|ref|YP_003816488.1| - 0.03 14.0 0.0 0.16 11.7 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain Vps53_N PF04100.12 gi|302348850|ref|YP_003816488.1| - 0.11 11.4 7.8 0.19 10.7 7.8 1.2 1 0 0 1 1 1 0 Vps53-like, N-terminal Baculo_PEP_C PF04513.12 gi|302348850|ref|YP_003816488.1| - 0.25 11.4 3.8 3.7 7.6 0.2 2.1 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_14 PF13173.6 gi|302348850|ref|YP_003816488.1| - 0.26 11.3 2.1 6 6.9 1.1 2.7 2 1 1 3 3 3 0 AAA domain DUF948 PF06103.11 gi|302348850|ref|YP_003816488.1| - 0.38 11.0 3.5 1.1 9.5 2.5 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) TPP_enzyme_C PF02775.21 gi|302348851|ref|YP_003816489.1| - 5.9e-21 74.8 0.3 7.9e-21 74.4 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|302348851|ref|YP_003816489.1| - 9.4e-05 21.8 0.1 0.00014 21.1 0.1 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|302348851|ref|YP_003816489.1| - 0.12 11.3 1.5 0.16 10.8 1.5 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component POR_N PF01855.19 gi|302348852|ref|YP_003816490.1| - 1.4e-71 240.9 4.1 1.9e-71 240.5 4.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|302348852|ref|YP_003816490.1| - 2.1e-30 105.0 0.0 5e-30 103.8 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|302348852|ref|YP_003816490.1| - 2e-09 37.4 0.0 6.7e-09 35.7 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|302348852|ref|YP_003816490.1| - 0.0097 15.5 1.3 0.017 14.8 1.3 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|302348853|ref|YP_003816491.1| - 1.2e-15 56.6 12.2 1.1e-09 37.6 4.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|302348853|ref|YP_003816491.1| - 4.1e-11 43.3 20.7 6.8e-08 33.0 9.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|302348853|ref|YP_003816491.1| - 5.2e-11 42.5 7.0 6.1e-11 42.3 7.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|302348853|ref|YP_003816491.1| - 1e-08 34.8 11.3 6.3e-06 26.0 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|302348853|ref|YP_003816491.1| - 1.1e-08 35.0 19.4 2.6e-05 24.2 9.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|302348853|ref|YP_003816491.1| - 2.6e-08 34.7 6.2 1.8e-05 25.6 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|302348853|ref|YP_003816491.1| - 6e-08 32.3 11.7 8.7e-06 25.5 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|302348853|ref|YP_003816491.1| - 3.5e-07 30.3 8.2 7.3e-07 29.3 8.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|302348853|ref|YP_003816491.1| - 7.5e-05 23.2 8.1 0.083 13.5 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|302348853|ref|YP_003816491.1| - 0.00051 20.7 10.7 0.0063 17.2 3.1 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|302348853|ref|YP_003816491.1| - 0.0014 19.1 10.3 0.18 12.3 3.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|302348853|ref|YP_003816491.1| - 0.0022 18.3 9.2 0.094 13.3 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|302348853|ref|YP_003816491.1| - 0.0028 18.2 9.9 0.11 13.1 2.3 2.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|302348853|ref|YP_003816491.1| - 0.13 13.3 7.0 0.13 13.3 7.0 2.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|302348853|ref|YP_003816491.1| - 0.23 11.6 7.0 7.6 6.8 6.9 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|302348853|ref|YP_003816491.1| - 0.46 11.4 10.9 0.26 12.1 2.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|302348854|ref|YP_003816492.1| - 9.3e-37 126.8 0.0 1.1e-36 126.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF1743 PF08489.11 gi|302348855|ref|YP_003816493.1| - 7.3e-24 84.1 0.0 1.3e-23 83.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.11 gi|302348855|ref|YP_003816493.1| - 0.016 15.1 1.7 0.031 14.2 1.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|302348855|ref|YP_003816493.1| - 0.017 14.8 7.1 0.031 13.9 7.1 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain tRNA_anti-codon PF01336.25 gi|302348855|ref|YP_003816493.1| - 0.024 14.6 0.0 0.043 13.8 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain zf-TFIIB PF13453.6 gi|302348855|ref|YP_003816493.1| - 0.034 13.5 3.1 0.075 12.4 3.1 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger HypA PF01155.19 gi|302348855|ref|YP_003816493.1| - 0.061 13.3 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HIT PF04438.16 gi|302348855|ref|YP_003816493.1| - 0.08 12.8 4.4 0.89 9.5 0.4 2.3 2 0 0 2 2 2 0 HIT zinc finger zf_UBZ PF18439.1 gi|302348855|ref|YP_003816493.1| - 0.15 11.7 1.3 17 5.1 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|302348855|ref|YP_003816493.1| - 0.18 11.9 0.9 0.32 11.1 0.9 1.4 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|302348855|ref|YP_003816493.1| - 0.21 11.3 4.8 0.54 10.0 4.8 1.7 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|302348855|ref|YP_003816493.1| - 0.35 10.3 3.1 11 5.5 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|302348855|ref|YP_003816493.1| - 0.49 10.6 3.5 1.2 9.3 3.2 1.7 1 1 1 2 2 2 0 Zinc ribbon domain HscB_4_cys PF18256.1 gi|302348855|ref|YP_003816493.1| - 0.63 9.9 5.6 1.4 8.8 5.6 1.6 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif zinc_ribbon_2 PF13240.6 gi|302348855|ref|YP_003816493.1| - 1.8 8.4 3.7 11 5.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|302348855|ref|YP_003816493.1| - 2 8.5 7.3 12 6.0 7.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|302348855|ref|YP_003816493.1| - 2.9 8.5 6.4 7.8 7.1 6.4 1.8 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn_ribbon_SprT PF17283.2 gi|302348855|ref|YP_003816493.1| - 3.3 7.7 8.7 1.5 8.8 5.6 2.1 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf-ISL3 PF14690.6 gi|302348855|ref|YP_003816493.1| - 5.5 7.7 8.4 4.8e+02 1.5 8.4 2.5 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 MFS_1 PF07690.16 gi|302348856|ref|YP_003816494.1| - 6.3e-12 45.1 48.0 6.3e-12 45.1 48.0 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Helicase_C PF00271.31 gi|302348858|ref|YP_003816496.1| - 8e-24 84.1 0.0 1.2e-19 70.7 0.0 2.4 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|302348858|ref|YP_003816496.1| - 4.2e-22 78.7 0.0 7.2e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|302348858|ref|YP_003816496.1| - 1.1e-10 42.1 0.1 3.8e-10 40.4 0.1 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|302348858|ref|YP_003816496.1| - 5e-07 29.9 0.0 8.2e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 gi|302348858|ref|YP_003816496.1| - 0.001 18.5 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 SecA DEAD-like domain AAA_30 PF13604.6 gi|302348858|ref|YP_003816496.1| - 0.0019 18.0 0.0 0.0077 16.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain Glyco_tran_WecB PF03808.13 gi|302348858|ref|YP_003816496.1| - 0.063 13.2 0.0 11 5.9 0.0 2.4 2 0 0 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family AAA_19 PF13245.6 gi|302348858|ref|YP_003816496.1| - 0.075 13.4 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain UvrD-helicase PF00580.21 gi|302348858|ref|YP_003816496.1| - 0.087 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Sugar_tr PF00083.24 gi|302348859|ref|YP_003816497.1| - 2.4e-56 191.5 16.7 3e-56 191.2 16.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|302348859|ref|YP_003816497.1| - 1.4e-31 109.7 41.3 1.6e-29 103.0 32.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily dCMP_cyt_deam_1 PF00383.23 gi|302348860|ref|YP_003816498.1| - 1.7e-13 50.3 0.0 2e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|302348860|ref|YP_003816498.1| - 2.5e-11 43.9 0.8 3.7e-10 40.1 0.3 2.0 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|302348860|ref|YP_003816498.1| - 0.00036 20.2 1.5 0.032 13.8 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases Lentivirus_VIF PF05851.11 gi|302348860|ref|YP_003816498.1| - 0.2 10.5 0.0 0.23 10.4 0.0 1.1 1 0 0 1 1 1 0 Lentivirus virion infectivity factor (VIF) Pyr_redox_2 PF07992.14 gi|302348861|ref|YP_003816499.1| - 8e-57 192.7 1.0 1e-56 192.4 1.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|302348861|ref|YP_003816499.1| - 2.6e-24 85.6 0.1 4e-23 81.8 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|302348861|ref|YP_003816499.1| - 2e-21 76.3 0.6 1.1e-19 70.8 0.0 2.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|302348861|ref|YP_003816499.1| - 5.1e-11 42.4 0.1 2.1e-09 37.0 0.1 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|302348861|ref|YP_003816499.1| - 1.2e-07 31.1 2.6 0.00074 18.7 0.8 3.9 3 1 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|302348861|ref|YP_003816499.1| - 1.6e-07 30.8 6.4 0.001 18.2 0.4 3.4 2 1 1 3 3 3 3 FAD binding domain K_oxygenase PF13434.6 gi|302348861|ref|YP_003816499.1| - 1.5e-06 27.6 0.0 6.8e-05 22.2 0.0 2.1 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|302348861|ref|YP_003816499.1| - 3.8e-06 26.4 0.5 0.0074 15.6 0.3 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|302348861|ref|YP_003816499.1| - 4.5e-05 23.0 2.0 0.0018 17.7 0.0 2.9 2 1 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|302348861|ref|YP_003816499.1| - 0.00011 22.3 0.8 0.72 10.1 0.2 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|302348861|ref|YP_003816499.1| - 0.00083 18.2 7.6 0.15 10.7 0.3 3.4 3 1 1 4 4 4 2 HI0933-like protein DAO PF01266.24 gi|302348861|ref|YP_003816499.1| - 0.0013 18.4 8.1 0.33 10.5 0.0 3.4 3 1 0 3 3 3 2 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|302348861|ref|YP_003816499.1| - 0.01 15.4 0.2 0.07 12.7 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.17 gi|302348861|ref|YP_003816499.1| - 0.011 14.9 0.7 0.26 10.5 0.1 2.6 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.18 gi|302348861|ref|YP_003816499.1| - 0.013 15.4 1.1 0.06 13.2 0.1 2.4 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|302348861|ref|YP_003816499.1| - 0.013 14.8 0.1 0.13 11.6 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|302348861|ref|YP_003816499.1| - 0.029 13.4 4.4 2.5 7.1 0.2 2.8 2 1 1 3 3 3 0 Lycopene cyclase protein XdhC_C PF13478.6 gi|302348861|ref|YP_003816499.1| - 0.044 14.3 0.0 0.24 11.9 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|302348861|ref|YP_003816499.1| - 0.093 13.0 0.4 0.68 10.2 0.0 2.7 3 0 0 3 3 2 0 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|302348861|ref|YP_003816499.1| - 0.093 12.0 0.2 0.22 10.8 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|302348862|ref|YP_003816500.1| - 0.016 14.5 0.0 0.23 10.7 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain NAD_binding_2 PF03446.15 gi|302348862|ref|YP_003816500.1| - 0.04 14.1 0.0 0.062 13.5 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_2 PF00890.24 gi|302348862|ref|YP_003816500.1| - 0.052 12.6 0.0 0.1 11.7 0.0 1.5 1 0 0 1 1 1 0 FAD binding domain DAO PF01266.24 gi|302348862|ref|YP_003816500.1| - 0.13 11.9 0.3 12 5.3 0.0 2.8 3 0 0 3 3 3 0 FAD dependent oxidoreductase Baculo_p24 PF05073.12 gi|302348862|ref|YP_003816500.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Baculovirus P24 capsid protein Lycopene_cycl PF05834.12 gi|302348862|ref|YP_003816500.1| - 0.17 10.9 0.1 0.34 9.9 0.0 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|302348862|ref|YP_003816500.1| - 0.21 10.8 0.2 0.47 9.6 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|302348862|ref|YP_003816500.1| - 0.32 11.3 4.7 0.9 9.8 0.1 3.0 4 0 0 4 4 4 0 NAD(P)-binding Rossmann-like domain AsnC_trans_reg PF01037.21 gi|302348863|ref|YP_003816501.1| - 5.4e-14 51.9 0.3 6.1e-14 51.7 0.3 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|302348863|ref|YP_003816501.1| - 0.009 16.0 0.3 3.1 7.9 0.1 2.1 1 1 1 2 2 2 2 NapD protein GYD PF08734.11 gi|302348863|ref|YP_003816501.1| - 0.03 14.3 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 GYD domain RecO_N_2 PF13114.6 gi|302348863|ref|YP_003816501.1| - 0.054 13.2 0.4 0.085 12.6 0.4 1.6 1 1 0 1 1 1 0 RecO N terminal Pribosyltran_N PF13793.6 gi|302348864|ref|YP_003816502.1| - 2.7e-23 82.1 0.0 1.1e-19 70.5 0.0 2.4 2 1 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|302348864|ref|YP_003816502.1| - 1e-19 70.6 0.1 6.1e-19 68.1 0.2 2.1 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|302348864|ref|YP_003816502.1| - 8.4e-19 68.3 2.6 3.6e-14 53.2 1.7 2.7 2 1 0 3 3 3 2 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|302348864|ref|YP_003816502.1| - 3.1e-07 30.0 0.1 6e-07 29.1 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|302348864|ref|YP_003816502.1| - 0.0011 18.5 0.1 0.0018 17.8 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase NAD_binding_10 PF13460.6 gi|302348864|ref|YP_003816502.1| - 0.049 13.5 3.2 0.18 11.7 0.1 2.7 1 1 1 2 2 2 0 NAD(P)H-binding PRTase_3 PF15610.6 gi|302348864|ref|YP_003816502.1| - 0.057 12.7 0.0 0.26 10.5 0.1 1.9 2 0 0 2 2 2 0 PRTase ComF-like Pribosyltran PF00156.27 gi|302348865|ref|YP_003816503.1| - 1.7e-15 56.9 0.1 2.8e-15 56.2 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|302348865|ref|YP_003816503.1| - 1.9e-05 24.6 0.0 6.8e-05 22.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_26 PF13443.6 gi|302348865|ref|YP_003816503.1| - 0.064 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain S1 PF00575.23 gi|302348866|ref|YP_003816504.1| - 1.3e-11 44.7 0.2 2.6e-11 43.7 0.2 1.5 1 0 0 1 1 1 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.17 gi|302348866|ref|YP_003816504.1| - 1.2e-10 41.6 0.1 2.9e-10 40.4 0.0 1.7 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 DUF826 PF05696.11 gi|302348866|ref|YP_003816504.1| - 0.017 15.2 0.0 0.031 14.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF826) COMP PF11598.8 gi|302348866|ref|YP_003816504.1| - 0.07 13.6 0.2 0.15 12.5 0.2 1.5 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein tRNA_bind PF01588.20 gi|302348867|ref|YP_003816505.1| - 1.3e-29 102.1 0.0 1.5e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain HupF_HypC PF01455.18 gi|302348867|ref|YP_003816505.1| - 0.011 15.9 0.1 0.043 14.0 0.0 2.0 2 1 0 2 2 2 0 HupF/HypC family ResIII PF04851.15 gi|302348869|ref|YP_003816507.1| - 1.2e-25 90.5 0.1 2.9e-24 86.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|302348869|ref|YP_003816507.1| - 2.6e-22 79.3 0.1 4.5e-22 78.4 0.1 1.4 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|302348869|ref|YP_003816507.1| - 7.9e-18 64.8 0.0 2.4e-17 63.3 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|302348869|ref|YP_003816507.1| - 4e-09 36.5 0.1 2.5e-08 33.9 0.0 2.3 2 1 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|302348869|ref|YP_003816507.1| - 1.9e-07 30.1 0.0 1.2e-06 27.5 0.0 2.0 1 1 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|302348869|ref|YP_003816507.1| - 0.00048 20.4 0.1 0.015 15.5 0.0 2.9 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.9 gi|302348869|ref|YP_003816507.1| - 0.017 14.4 0.2 0.045 13.0 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Helicase_C_3 PF13625.6 gi|302348869|ref|YP_003816507.1| - 0.03 14.5 0.0 0.078 13.1 0.0 1.7 1 0 0 1 1 1 0 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|302348869|ref|YP_003816507.1| - 0.051 13.5 0.0 0.18 11.7 0.0 2.0 1 1 0 1 1 1 0 Xeroderma pigmentosum group B helicase damage recognition domain DUF974 PF06159.13 gi|302348869|ref|YP_003816507.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF974) PS_Dcarbxylase PF02666.15 gi|302348869|ref|YP_003816507.1| - 0.097 12.2 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Phosphatidylserine decarboxylase IstB_IS21 PF01695.17 gi|302348869|ref|YP_003816507.1| - 0.12 12.1 0.3 0.55 9.9 0.0 2.2 3 0 0 3 3 3 0 IstB-like ATP binding protein CoA_binding PF02629.19 gi|302348870|ref|YP_003816508.1| - 3.7e-33 114.1 2.4 3.7e-33 114.1 2.4 2.5 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.19 gi|302348870|ref|YP_003816508.1| - 4.1e-16 59.2 0.2 7.2e-16 58.4 0.2 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|302348870|ref|YP_003816508.1| - 2e-14 53.5 0.1 9.1e-14 51.4 0.0 1.9 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|302348870|ref|YP_003816508.1| - 4.5e-10 40.0 0.5 2.2e-09 37.8 0.1 2.2 2 1 0 2 2 2 1 CoA binding domain PHP PF02811.19 gi|302348870|ref|YP_003816508.1| - 0.019 15.3 0.0 0.024 14.9 0.0 1.3 1 0 0 1 1 1 0 PHP domain GFO_IDH_MocA PF01408.22 gi|302348870|ref|YP_003816508.1| - 0.048 14.5 0.1 0.17 12.7 0.1 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.10 gi|302348871|ref|YP_003816509.1| - 4.7e-56 189.6 0.1 1.2e-55 188.2 0.1 1.7 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|302348871|ref|YP_003816509.1| - 6.3e-17 61.8 0.1 9.5e-17 61.2 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|302348871|ref|YP_003816509.1| - 0.00021 20.8 0.2 0.00059 19.4 0.2 1.8 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|302348871|ref|YP_003816509.1| - 0.00023 21.0 0.1 0.00042 20.1 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Succ_CoA_lig PF13607.6 gi|302348871|ref|YP_003816509.1| - 0.0035 17.2 0.0 0.011 15.5 0.0 1.9 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain Alpha-amylase PF00128.24 gi|302348872|ref|YP_003816510.1| - 1.1e-51 176.4 0.0 2.2e-51 175.4 0.0 1.4 1 1 0 1 1 1 1 Alpha amylase, catalytic domain hDGE_amylase PF14701.6 gi|302348872|ref|YP_003816510.1| - 1.3e-05 24.5 0.0 0.00045 19.4 0.0 2.1 2 0 0 2 2 2 2 Glycogen debranching enzyme, glucanotransferase domain AMPK1_CBM PF16561.5 gi|302348872|ref|YP_003816510.1| - 0.04 14.1 0.0 1.8 8.8 0.0 2.9 3 0 0 3 3 3 0 Glycogen recognition site of AMP-activated protein kinase Phosphorylase PF00343.20 gi|302348873|ref|YP_003816511.1| - 5.7e-14 51.4 0.2 4.5e-11 41.8 0.1 2.3 2 0 0 2 2 2 2 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|302348873|ref|YP_003816511.1| - 1.4e-07 31.2 0.0 3.6e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|302348873|ref|YP_003816511.1| - 9.5e-05 22.8 0.0 0.00035 21.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Cyt_b-c1_8 PF10890.8 gi|302348873|ref|YP_003816511.1| - 0.0051 17.2 0.0 0.37 11.2 0.0 2.6 2 0 0 2 2 2 1 Cytochrome b-c1 complex subunit 8 Glyco_transf_4 PF13439.6 gi|302348873|ref|YP_003816511.1| - 0.057 13.4 0.0 0.16 12.0 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Peripla_BP_2 PF01497.18 gi|302348874|ref|YP_003816512.1| - 1.9e-26 93.1 0.0 2.3e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein MM_CoA_mutase PF01642.22 gi|302348875|ref|YP_003816513.1| - 2.7e-224 745.5 0.0 3.1e-224 745.3 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase QIL1 PF15884.5 gi|302348875|ref|YP_003816513.1| - 0.15 12.7 0.1 35 5.1 0.0 2.8 2 0 0 2 2 2 0 MICOS complex subunit MIC13, QIL1 B12-binding PF02310.19 gi|302348876|ref|YP_003816514.1| - 1e-24 86.9 2.6 1.1e-24 86.8 1.6 1.5 1 1 1 2 2 2 1 B12 binding domain TPP_enzyme_N PF02776.18 gi|302348876|ref|YP_003816514.1| - 0.0094 15.6 0.1 1.4 8.5 0.0 2.7 1 1 2 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain adh_short_C2 PF13561.6 gi|302348876|ref|YP_003816514.1| - 0.073 12.6 0.1 0.091 12.3 0.1 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase PEP_mutase PF13714.6 gi|302348876|ref|YP_003816514.1| - 0.074 12.5 0.0 0.13 11.7 0.0 1.4 1 1 0 1 1 1 0 Phosphoenolpyruvate phosphomutase HisG_C PF08029.11 gi|302348876|ref|YP_003816514.1| - 0.16 12.1 0.4 0.56 10.4 0.1 2.1 2 1 0 2 2 2 0 HisG, C-terminal domain MeaB PF03308.16 gi|302348877|ref|YP_003816515.1| - 2.2e-100 335.1 1.1 2.7e-100 334.8 1.1 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|302348877|ref|YP_003816515.1| - 1.2e-09 38.0 0.1 2.7e-09 36.9 0.1 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|302348877|ref|YP_003816515.1| - 1.5e-06 27.9 0.1 3.5e-05 23.5 0.1 2.4 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|302348877|ref|YP_003816515.1| - 1.8e-06 28.0 0.0 3.4e-06 27.1 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|302348877|ref|YP_003816515.1| - 8.1e-06 25.8 0.0 1.7e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|302348877|ref|YP_003816515.1| - 0.0002 21.2 0.0 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|302348877|ref|YP_003816515.1| - 0.00026 20.9 0.1 0.00073 19.5 0.1 1.7 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|302348877|ref|YP_003816515.1| - 0.00046 20.0 0.0 0.001 18.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|302348877|ref|YP_003816515.1| - 0.00094 18.6 0.3 0.011 15.1 0.0 2.2 2 0 0 2 2 2 1 KaiC APS_kinase PF01583.20 gi|302348877|ref|YP_003816515.1| - 0.0013 18.6 0.8 0.35 10.8 0.0 2.6 2 1 0 2 2 2 1 Adenylylsulphate kinase AAA_18 PF13238.6 gi|302348877|ref|YP_003816515.1| - 0.0015 19.1 0.2 0.013 16.1 0.1 2.2 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|302348877|ref|YP_003816515.1| - 0.0039 17.3 0.3 0.013 15.5 0.3 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase KAP_NTPase PF07693.14 gi|302348877|ref|YP_003816515.1| - 0.0097 15.2 0.1 0.089 12.0 0.0 2.3 2 1 1 3 3 3 1 KAP family P-loop domain Viral_helicase1 PF01443.18 gi|302348877|ref|YP_003816515.1| - 0.016 14.9 0.1 0.027 14.2 0.1 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RsgA_GTPase PF03193.16 gi|302348877|ref|YP_003816515.1| - 0.019 14.9 0.0 0.51 10.2 0.0 2.7 3 0 0 3 3 2 0 RsgA GTPase Ploopntkinase3 PF18751.1 gi|302348877|ref|YP_003816515.1| - 0.024 14.6 0.1 0.067 13.1 0.0 1.8 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 ABC_tran PF00005.27 gi|302348877|ref|YP_003816515.1| - 0.026 15.0 0.5 0.064 13.8 0.1 1.7 2 0 0 2 2 2 0 ABC transporter AAA_24 PF13479.6 gi|302348877|ref|YP_003816515.1| - 0.028 14.2 0.0 0.053 13.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|302348877|ref|YP_003816515.1| - 0.032 13.5 0.0 0.05 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.9 gi|302348877|ref|YP_003816515.1| - 0.033 13.1 0.1 0.057 12.3 0.1 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|302348877|ref|YP_003816515.1| - 0.034 14.4 0.2 0.14 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|302348877|ref|YP_003816515.1| - 0.034 13.4 0.3 0.08 12.2 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_17 PF13207.6 gi|302348877|ref|YP_003816515.1| - 0.042 14.3 0.2 0.18 12.2 0.0 2.2 3 0 0 3 3 2 0 AAA domain KTI12 PF08433.10 gi|302348877|ref|YP_003816515.1| - 0.05 13.1 0.0 0.095 12.1 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PIF1 PF05970.14 gi|302348877|ref|YP_003816515.1| - 0.05 12.8 0.0 0.093 11.9 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase PRK PF00485.18 gi|302348877|ref|YP_003816515.1| - 0.086 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|302348877|ref|YP_003816515.1| - 0.092 11.9 0.0 0.2 10.8 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain DUF1884 PF08967.10 gi|302348877|ref|YP_003816515.1| - 0.11 12.8 0.6 23 5.3 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1884) Thymidylate_kin PF02223.17 gi|302348877|ref|YP_003816515.1| - 0.13 12.0 0.2 0.25 11.0 0.0 1.6 2 0 0 2 2 1 0 Thymidylate kinase AAA_28 PF13521.6 gi|302348877|ref|YP_003816515.1| - 0.15 12.3 0.7 0.47 10.7 0.1 2.1 3 0 0 3 3 2 0 AAA domain RE_HpaII PF09561.10 gi|302348877|ref|YP_003816515.1| - 0.18 11.1 0.2 0.26 10.6 0.2 1.1 1 0 0 1 1 1 0 HpaII restriction endonuclease AAA_16 PF13191.6 gi|302348877|ref|YP_003816515.1| - 0.2 12.0 1.5 0.37 11.2 0.1 2.2 3 0 0 3 3 2 0 AAA ATPase domain AAA_19 PF13245.6 gi|302348877|ref|YP_003816515.1| - 0.28 11.5 1.3 0.56 10.5 1.3 1.9 1 1 0 1 1 1 0 AAA domain Ribosomal_S28e PF01200.18 gi|302348879|ref|YP_003816517.1| - 3.7e-31 106.9 4.5 4.4e-31 106.7 4.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e RNase_P_Rpp14 PF01900.19 gi|302348880|ref|YP_003816518.1| - 1.2e-13 51.1 0.0 1.3e-13 51.1 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family Pox_VERT_large PF04441.13 gi|302348880|ref|YP_003816518.1| - 0.0017 16.7 0.0 0.0017 16.7 0.0 1.0 1 0 0 1 1 1 1 Poxvirus early transcription factor (VETF), large subunit MMR_HSR1_C PF08438.10 gi|302348881|ref|YP_003816519.1| - 3.2e-32 111.4 0.0 6.1e-32 110.5 0.0 1.5 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|302348881|ref|YP_003816519.1| - 1.6e-20 73.2 0.0 2.5e-19 69.4 0.0 2.4 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|302348881|ref|YP_003816519.1| - 2.1e-16 59.7 0.0 3.9e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|302348881|ref|YP_003816519.1| - 2e-08 33.9 0.4 0.00017 21.1 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|302348881|ref|YP_003816519.1| - 0.0025 18.0 0.1 0.088 13.0 0.0 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF933) MMR_HSR1_Xtn PF16897.5 gi|302348881|ref|YP_003816519.1| - 0.025 14.6 0.0 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 gi|302348881|ref|YP_003816519.1| - 0.029 13.9 1.0 0.19 11.2 0.0 2.6 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|302348881|ref|YP_003816519.1| - 0.12 12.3 0.7 1.9 8.3 0.1 2.2 2 0 0 2 2 2 0 RsgA GTPase Dynamin_N PF00350.23 gi|302348881|ref|YP_003816519.1| - 0.13 12.3 0.1 2 8.5 0.1 2.5 3 0 0 3 3 3 0 Dynamin family DUF3600 PF12207.8 gi|302348882|ref|YP_003816520.1| - 0.032 14.2 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3600) PMT_2 PF13231.6 gi|302348883|ref|YP_003816521.1| - 6.2e-09 36.3 14.1 6.2e-09 36.3 14.1 3.0 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|302348883|ref|YP_003816521.1| - 0.018 14.6 19.1 34 3.9 19.1 3.5 1 1 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DNA_pol3_beta_2 PF02767.16 gi|302348886|ref|YP_003816524.1| - 0.12 12.6 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III beta subunit, central domain NTP_transferase PF00483.23 gi|302348889|ref|YP_003816527.1| - 1e-28 100.6 0.0 1.3e-28 100.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|302348889|ref|YP_003816527.1| - 2.5e-17 61.8 11.2 3.7e-07 29.6 0.5 4.3 3 1 2 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|302348889|ref|YP_003816527.1| - 5.9e-13 49.5 0.0 7.4e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|302348889|ref|YP_003816527.1| - 9.3e-06 25.5 0.0 1.6e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|302348889|ref|YP_003816527.1| - 0.0016 18.1 7.4 3.7 7.4 0.1 4.3 3 1 2 5 5 5 2 Hexapeptide repeat of succinyl-transferase OB_aCoA_assoc PF01796.17 gi|302348889|ref|YP_003816527.1| - 0.14 12.1 0.4 2.1 8.4 0.0 2.4 2 0 0 2 2 2 0 DUF35 OB-fold domain, acyl-CoA-associated Lactamase_B PF00753.27 gi|302348890|ref|YP_003816528.1| - 6.3e-12 45.9 2.8 1e-10 42.0 2.8 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|302348890|ref|YP_003816528.1| - 5.6e-05 22.8 0.0 8.4e-05 22.2 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain NDK PF00334.19 gi|302348891|ref|YP_003816529.1| - 9.7e-59 197.2 0.0 1.1e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU_D4 PF14578.6 gi|302348892|ref|YP_003816530.1| - 3.8e-36 122.8 4.7 5.1e-36 122.5 2.2 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|302348892|ref|YP_003816530.1| - 2.1e-31 109.0 0.0 1.8e-30 106.0 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|302348892|ref|YP_003816530.1| - 1.6e-24 86.0 0.2 4e-24 84.8 0.2 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|302348892|ref|YP_003816530.1| - 1.3e-13 51.2 8.5 5.9e-13 49.0 0.1 3.5 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|302348892|ref|YP_003816530.1| - 5.1e-07 29.8 0.2 2.1e-06 27.8 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|302348892|ref|YP_003816530.1| - 0.00063 19.9 0.0 0.0017 18.5 0.0 1.8 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|302348892|ref|YP_003816530.1| - 0.03 13.9 0.0 0.18 11.4 0.0 2.1 1 1 0 1 1 1 0 Ras family RsgA_GTPase PF03193.16 gi|302348892|ref|YP_003816530.1| - 0.07 13.0 0.5 4 7.3 0.0 3.5 3 1 1 4 4 4 0 RsgA GTPase Dynamin_N PF00350.23 gi|302348892|ref|YP_003816530.1| - 0.13 12.3 0.1 1 9.4 0.0 2.3 2 0 0 2 2 2 0 Dynamin family NTP_transferase PF00483.23 gi|302348893|ref|YP_003816531.1| - 1.8e-36 126.0 0.0 2e-36 125.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|302348893|ref|YP_003816531.1| - 2e-11 44.5 0.0 2.3e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|302348893|ref|YP_003816531.1| - 0.00014 21.7 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.6 gi|302348893|ref|YP_003816531.1| - 0.017 15.0 0.0 0.038 13.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) PIN_9 PF18477.1 gi|302348894|ref|YP_003816532.1| - 3.8e-14 53.0 2.3 4.6e-14 52.7 2.3 1.1 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|302348894|ref|YP_003816532.1| - 1e-08 35.4 0.0 1.3e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN PF01850.21 gi|302348894|ref|YP_003816532.1| - 8.2e-05 23.1 1.7 0.00043 20.8 1.2 1.9 1 1 1 2 2 2 2 PIN domain PIN_4 PF13638.6 gi|302348894|ref|YP_003816532.1| - 0.00023 21.5 2.4 0.004 17.4 2.4 2.1 1 1 0 1 1 1 1 PIN domain 5_3_exonuc_N PF02739.16 gi|302348894|ref|YP_003816532.1| - 0.014 15.3 0.1 0.017 15.0 0.1 1.2 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain NYN_YacP PF05991.11 gi|302348894|ref|YP_003816532.1| - 0.033 14.1 0.1 0.06 13.3 0.1 1.5 1 1 0 1 1 1 0 YacP-like NYN domain PIN_3 PF13470.6 gi|302348894|ref|YP_003816532.1| - 0.054 14.2 0.1 0.082 13.7 0.1 1.4 1 1 0 1 1 1 0 PIN domain TK PF00265.18 gi|302348894|ref|YP_003816532.1| - 0.098 12.5 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Thymidine kinase GTP_EFTU PF00009.27 gi|302348895|ref|YP_003816533.1| - 1.3e-31 109.7 0.0 7.3e-31 107.2 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|302348895|ref|YP_003816533.1| - 3.6e-28 97.6 0.1 9.8e-28 96.2 0.1 1.8 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|302348895|ref|YP_003816533.1| - 9.8e-13 48.3 1.0 5.1e-10 39.6 0.7 3.4 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|302348895|ref|YP_003816533.1| - 5.1e-05 23.3 0.0 9.9e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|302348895|ref|YP_003816533.1| - 5.4e-05 23.2 0.0 0.0015 18.4 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|302348895|ref|YP_003816533.1| - 0.0043 16.8 0.1 0.91 9.3 0.0 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|302348895|ref|YP_003816533.1| - 0.0077 15.8 0.3 3.6 7.1 0.1 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|302348895|ref|YP_003816533.1| - 0.014 15.4 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain MeaB PF03308.16 gi|302348895|ref|YP_003816533.1| - 0.019 14.0 0.0 0.41 9.6 0.0 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Dynamin_N PF00350.23 gi|302348895|ref|YP_003816533.1| - 0.17 11.9 0.0 0.5 10.4 0.0 1.7 1 1 0 2 2 2 0 Dynamin family Spore_IV_A PF09547.10 gi|302348895|ref|YP_003816533.1| - 0.2 10.5 0.0 0.39 9.6 0.0 1.4 2 0 0 2 2 2 0 Stage IV sporulation protein A (spore_IV_A) Ribosomal_S6e PF01092.19 gi|302348896|ref|YP_003816534.1| - 2.4e-24 85.7 0.0 6e-24 84.4 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein S6e Molydop_binding PF01568.21 gi|302348896|ref|YP_003816534.1| - 0.03 14.3 0.0 0.057 13.5 0.0 1.4 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain PhosphMutase PF10143.9 gi|302348897|ref|YP_003816535.1| - 3.3e-50 170.3 0.0 5.2e-50 169.6 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|302348897|ref|YP_003816535.1| - 4.5e-26 91.7 0.0 5.6e-26 91.4 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|302348897|ref|YP_003816535.1| - 0.015 14.2 0.0 0.037 13.0 0.0 1.5 2 0 0 2 2 2 0 Alkaline phosphatase Phosphodiest PF01663.22 gi|302348897|ref|YP_003816535.1| - 0.079 12.5 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Ribosomal_S13_N PF08069.12 gi|302348900|ref|YP_003816538.1| - 7.8e-24 83.5 0.1 1.2e-23 82.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|302348900|ref|YP_003816538.1| - 9.6e-18 64.2 0.1 1.5e-17 63.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 FGAR-AT_linker PF18072.1 gi|302348900|ref|YP_003816538.1| - 0.0038 17.7 0.0 1.9 9.1 0.0 2.6 2 1 0 2 2 2 2 Formylglycinamide ribonucleotide amidotransferase linker domain Glycos_trans_3N PF02885.17 gi|302348900|ref|YP_003816538.1| - 0.015 15.1 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family, helical bundle domain RecX PF02631.16 gi|302348900|ref|YP_003816538.1| - 0.071 13.6 0.0 5.6 7.4 0.0 2.1 2 0 0 2 2 2 0 RecX family Ribosomal_S3Ae PF01015.18 gi|302348901|ref|YP_003816539.1| - 2.7e-57 193.6 0.8 3.3e-57 193.3 0.8 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Band_7 PF01145.25 gi|302348901|ref|YP_003816539.1| - 0.00036 20.6 0.9 0.00089 19.3 0.9 1.7 1 1 0 1 1 1 1 SPFH domain / Band 7 family DoxA PF07680.11 gi|302348901|ref|YP_003816539.1| - 0.003 17.4 0.0 0.0055 16.6 0.0 1.5 1 0 0 1 1 1 1 TQO small subunit DoxA RNA_POL_M_15KD PF02150.16 gi|302348902|ref|YP_003816540.1| - 7.1e-07 29.0 0.5 1.3e-06 28.2 0.5 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|302348902|ref|YP_003816540.1| - 0.00017 21.2 2.5 0.00076 19.1 2.6 1.9 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.6 gi|302348902|ref|YP_003816540.1| - 0.00093 18.5 1.4 0.002 17.4 1.4 1.6 1 0 0 1 1 1 1 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|302348902|ref|YP_003816540.1| - 0.0029 17.2 4.0 1.3 8.8 1.4 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|302348902|ref|YP_003816540.1| - 0.0031 17.9 0.3 0.006 16.9 0.3 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|302348902|ref|YP_003816540.1| - 0.0097 15.8 0.4 0.019 14.9 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.21 gi|302348902|ref|YP_003816540.1| - 0.01 16.0 0.5 0.019 15.2 0.5 1.5 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain DZR PF12773.7 gi|302348902|ref|YP_003816540.1| - 0.014 15.4 0.4 0.022 14.8 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon SBDS PF01172.18 gi|302348902|ref|YP_003816540.1| - 0.03 14.4 0.4 0.037 14.1 0.4 1.1 1 0 0 1 1 1 0 Shwachman-Bodian-Diamond syndrome (SBDS) protein YhfH PF14149.6 gi|302348902|ref|YP_003816540.1| - 0.041 13.9 0.8 11 6.1 0.1 2.5 2 0 0 2 2 2 0 YhfH-like protein zf-FPG_IleRS PF06827.14 gi|302348902|ref|YP_003816540.1| - 0.052 13.4 4.2 0.29 11.0 0.2 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf_UBZ PF18439.1 gi|302348902|ref|YP_003816540.1| - 0.056 13.1 0.7 7.2 6.3 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger MqsA_antitoxin PF15731.5 gi|302348902|ref|YP_003816540.1| - 0.099 12.8 2.7 1.2 9.3 0.7 2.0 1 1 1 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA C1_1 PF00130.22 gi|302348902|ref|YP_003816540.1| - 0.11 12.4 0.7 0.17 11.8 0.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.7 gi|302348902|ref|YP_003816540.1| - 0.11 12.4 0.9 0.21 11.6 0.9 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|302348902|ref|YP_003816540.1| - 0.14 12.7 5.7 3.7 8.1 0.4 2.3 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Nudix_N_2 PF14803.6 gi|302348902|ref|YP_003816540.1| - 0.15 12.0 4.2 0.94 9.5 4.4 2.0 1 1 1 2 2 2 0 Nudix N-terminal eIF-5_eIF-2B PF01873.17 gi|302348902|ref|YP_003816540.1| - 0.19 11.6 2.5 1.5 8.7 0.5 2.0 2 0 0 2 2 2 0 Domain found in IF2B/IF5 DUF2387 PF09526.10 gi|302348902|ref|YP_003816540.1| - 0.25 11.5 2.9 0.66 10.2 2.9 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ISL3 PF14690.6 gi|302348902|ref|YP_003816540.1| - 0.31 11.7 2.5 1.5 9.5 0.4 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.6 gi|302348902|ref|YP_003816540.1| - 0.36 10.3 5.1 7.3 6.1 5.1 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|302348902|ref|YP_003816540.1| - 0.58 10.9 6.6 0.93 10.3 0.7 2.5 2 1 0 2 2 2 0 zinc-ribbon family UPF0547 PF10571.9 gi|302348902|ref|YP_003816540.1| - 0.67 10.1 4.1 6.3 7.0 0.6 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zn-ribbon_14 PF16503.5 gi|302348902|ref|YP_003816540.1| - 4.7 6.8 6.3 2.5 7.7 1.0 2.2 2 0 0 2 2 2 0 Zinc-ribbon Ribosomal_L33 PF00471.20 gi|302348902|ref|YP_003816540.1| - 4.9 7.7 6.7 16 6.0 0.0 2.7 2 1 0 2 2 2 0 Ribosomal protein L33 TF_Zn_Ribbon PF08271.12 gi|302348902|ref|YP_003816540.1| - 5 6.7 6.4 3.4 7.3 3.2 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding Radical_SAM PF04055.21 gi|302348903|ref|YP_003816541.1| - 9.6e-22 78.1 0.0 6.7e-21 75.4 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily zf-ribbon_3 PF13248.6 gi|302348903|ref|YP_003816541.1| - 0.00061 19.1 2.3 0.77 9.3 0.1 2.8 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|302348903|ref|YP_003816541.1| - 0.0045 17.0 0.1 0.0045 17.0 0.1 2.4 3 0 0 3 3 3 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|302348903|ref|YP_003816541.1| - 0.0077 15.9 0.2 5.6 6.7 0.0 2.6 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|302348903|ref|YP_003816541.1| - 0.022 14.5 9.1 0.53 10.1 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|302348903|ref|YP_003816541.1| - 0.046 13.8 1.3 3.3 7.8 0.1 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Fer4_12 PF13353.6 gi|302348903|ref|YP_003816541.1| - 0.048 13.9 0.0 0.09 13.0 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain NRDD PF13597.6 gi|302348903|ref|YP_003816541.1| - 0.06 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase OrfB_Zn_ribbon PF07282.11 gi|302348903|ref|YP_003816541.1| - 0.095 12.6 0.6 0.72 9.8 0.6 2.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|302348903|ref|YP_003816541.1| - 0.2 11.2 2.2 7.3 6.2 0.0 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.19 gi|302348903|ref|YP_003816541.1| - 0.71 9.7 8.1 3.1 7.7 0.0 3.6 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.12 gi|302348903|ref|YP_003816541.1| - 1.2 9.2 4.9 2.4 8.2 0.1 3.0 3 1 0 3 3 3 0 zinc-ribbons DpnI PF06044.12 gi|302348903|ref|YP_003816541.1| - 1.8 8.1 5.2 30 4.2 0.6 3.5 3 1 1 4 4 4 0 Dam-replacing family zinc_ribbon_4 PF13717.6 gi|302348903|ref|YP_003816541.1| - 2.5 8.1 6.0 24 5.0 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|302348904|ref|YP_003816542.1| - 0.0083 15.5 1.8 0.4 10.2 0.2 2.5 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|302348904|ref|YP_003816542.1| - 0.01 15.8 0.1 0.02 14.9 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|302348904|ref|YP_003816542.1| - 0.018 14.8 3.7 0.7 9.7 0.5 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|302348904|ref|YP_003816542.1| - 0.053 13.6 0.5 0.15 12.1 0.2 1.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.11 gi|302348904|ref|YP_003816542.1| - 0.055 13.1 0.1 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain HscB_4_cys PF18256.1 gi|302348904|ref|YP_003816542.1| - 0.15 11.9 2.4 1.5 8.7 0.5 2.3 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Nudix_N_2 PF14803.6 gi|302348904|ref|YP_003816542.1| - 0.36 10.8 2.6 0.31 11.0 0.3 2.0 2 0 0 2 2 2 0 Nudix N-terminal Translin PF01997.16 gi|302348905|ref|YP_003816543.1| - 3.2e-13 50.1 0.0 1.1e-11 45.1 0.0 2.1 1 1 0 1 1 1 1 Translin family TPR_14 PF13428.6 gi|302348905|ref|YP_003816543.1| - 0.11 13.4 1.6 32 5.7 0.1 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat YfdX PF10938.8 gi|302348905|ref|YP_003816543.1| - 0.12 12.3 0.0 0.76 9.7 0.0 2.3 1 1 1 2 2 2 0 YfdX protein TPR_2 PF07719.17 gi|302348905|ref|YP_003816543.1| - 0.21 11.8 1.7 0.87 9.9 0.0 2.7 3 0 0 3 3 3 0 Tetratricopeptide repeat B12-binding PF02310.19 gi|302348906|ref|YP_003816544.1| - 0.062 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain Utp12 PF04003.12 gi|302348906|ref|YP_003816544.1| - 0.075 13.3 0.1 0.12 12.7 0.1 1.2 1 0 0 1 1 1 0 Dip2/Utp12 Family Ribosomal_L40e PF01020.17 gi|302348907|ref|YP_003816545.1| - 4.2e-10 39.4 1.3 5e-10 39.1 1.3 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-RanBP PF00641.18 gi|302348907|ref|YP_003816545.1| - 0.0001 21.6 1.4 0.00013 21.2 1.4 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.6 gi|302348907|ref|YP_003816545.1| - 0.00046 19.8 4.7 0.00071 19.2 4.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.8 gi|302348907|ref|YP_003816545.1| - 0.0012 18.6 3.3 0.0017 18.2 3.3 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|302348907|ref|YP_003816545.1| - 0.0041 17.1 2.2 0.0052 16.8 2.2 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|302348907|ref|YP_003816545.1| - 0.014 15.4 0.3 0.014 15.4 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|302348907|ref|YP_003816545.1| - 0.039 13.4 2.8 0.056 12.9 2.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.6 gi|302348907|ref|YP_003816545.1| - 0.071 13.2 0.6 0.15 12.1 0.6 1.6 1 1 0 1 1 1 0 CpXC protein RNA_POL_M_15KD PF02150.16 gi|302348907|ref|YP_003816545.1| - 0.073 13.0 2.9 0.35 10.8 0.0 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_10 PF10058.9 gi|302348907|ref|YP_003816545.1| - 0.11 12.2 0.5 0.11 12.2 0.5 2.1 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_13 PF09855.9 gi|302348907|ref|YP_003816545.1| - 0.18 12.0 1.3 1.7 8.9 0.0 2.0 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_S26e PF01283.19 gi|302348908|ref|YP_003816546.1| - 2.9e-24 85.6 1.4 3.5e-24 85.3 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|302348908|ref|YP_003816546.1| - 0.00011 22.3 0.5 0.0054 16.9 0.2 2.5 3 0 0 3 3 3 1 C4-type zinc ribbon domain Tat PF00539.18 gi|302348908|ref|YP_003816546.1| - 0.006 16.7 0.1 0.006 16.7 0.1 2.1 2 1 0 2 2 2 1 Transactivating regulatory protein (Tat) DZR PF12773.7 gi|302348908|ref|YP_003816546.1| - 0.049 13.7 1.7 0.09 12.8 0.1 1.9 2 0 0 2 2 2 0 Double zinc ribbon Ribosomal_L18A PF01775.17 gi|302348909|ref|YP_003816547.1| - 3.5e-12 46.5 0.0 4.9e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A DUF5615 PF18480.1 gi|302348909|ref|YP_003816547.1| - 0.11 12.2 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) Prefoldin PF02996.17 gi|302348910|ref|YP_003816548.1| - 1.6e-15 57.0 0.1 2.2e-15 56.6 0.1 1.1 1 0 0 1 1 1 1 Prefoldin subunit Sec34 PF04136.15 gi|302348910|ref|YP_003816548.1| - 8.7e-05 22.4 1.1 0.012 15.5 0.2 2.1 2 0 0 2 2 2 1 Sec34-like family APG6_N PF17675.1 gi|302348910|ref|YP_003816548.1| - 0.0021 18.6 2.3 0.0059 17.1 2.3 1.6 1 1 0 1 1 1 1 Apg6 coiled-coil region ATP-synt_B PF00430.18 gi|302348910|ref|YP_003816548.1| - 0.0024 17.9 0.8 0.0041 17.2 0.8 1.4 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) Syntaxin_2 PF14523.6 gi|302348910|ref|YP_003816548.1| - 0.015 15.7 0.4 3.3 8.1 0.1 2.1 2 0 0 2 2 2 0 Syntaxin-like protein CENP-F_N PF10481.9 gi|302348910|ref|YP_003816548.1| - 0.018 14.7 0.5 0.029 14.0 0.5 1.3 1 0 0 1 1 1 0 Cenp-F N-terminal domain vATP-synt_E PF01991.18 gi|302348910|ref|YP_003816548.1| - 0.021 14.2 0.7 0.021 14.2 0.7 1.5 2 0 0 2 2 2 0 ATP synthase (E/31 kDa) subunit T2SSF PF00482.23 gi|302348910|ref|YP_003816548.1| - 0.036 14.0 0.7 1 9.3 0.1 2.1 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F DUF2533 PF10752.9 gi|302348910|ref|YP_003816548.1| - 0.069 13.6 0.3 0.17 12.3 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2533) YlbD_coat PF14071.6 gi|302348910|ref|YP_003816548.1| - 0.15 12.4 0.9 6.2 7.1 0.2 2.1 2 0 0 2 2 2 0 Putative coat protein Mod_r PF07200.13 gi|302348910|ref|YP_003816548.1| - 0.15 12.2 3.5 0.55 10.3 3.5 1.9 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein LMBR1 PF04791.16 gi|302348910|ref|YP_003816548.1| - 0.18 10.6 0.0 0.21 10.4 0.0 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein TraC PF07820.12 gi|302348910|ref|YP_003816548.1| - 0.19 12.1 1.5 0.94 9.9 0.1 2.0 2 0 0 2 2 2 0 TraC-like protein NPV_P10 PF05531.12 gi|302348910|ref|YP_003816548.1| - 0.22 12.0 4.1 1.7 9.1 0.3 2.6 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.9 gi|302348910|ref|YP_003816548.1| - 0.23 11.8 2.6 8.9 6.7 0.5 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DHR10 PF18595.1 gi|302348910|ref|YP_003816548.1| - 0.32 11.1 7.0 3.4 7.8 3.0 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Matrilin_ccoil PF10393.9 gi|302348910|ref|YP_003816548.1| - 0.47 10.4 2.2 0.45 10.4 0.3 2.0 2 1 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin SRP54 PF00448.22 gi|302348911|ref|YP_003816549.1| - 3.6e-72 242.1 0.1 4.6e-72 241.8 0.1 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|302348911|ref|YP_003816549.1| - 7.2e-10 39.0 1.3 2e-09 37.5 1.3 1.8 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|302348911|ref|YP_003816549.1| - 0.00018 21.3 0.8 0.00031 20.5 0.8 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|302348911|ref|YP_003816549.1| - 0.0011 19.2 0.0 0.0031 17.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.15 gi|302348911|ref|YP_003816549.1| - 0.0068 16.3 1.2 0.039 13.9 0.3 2.4 2 1 0 3 3 3 1 NTPase AAA_17 PF13207.6 gi|302348911|ref|YP_003816549.1| - 0.0079 16.6 0.0 0.022 15.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain TPP_enzyme_M PF00205.22 gi|302348911|ref|YP_003816549.1| - 0.018 14.8 0.2 2.7 7.7 0.1 2.6 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain cobW PF02492.19 gi|302348911|ref|YP_003816549.1| - 0.019 14.5 0.1 0.037 13.6 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|302348911|ref|YP_003816549.1| - 0.02 15.3 0.1 0.044 14.2 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|302348911|ref|YP_003816549.1| - 0.025 14.7 0.6 0.14 12.3 0.6 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase MeaB PF03308.16 gi|302348911|ref|YP_003816549.1| - 0.053 12.5 0.1 0.1 11.6 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|302348911|ref|YP_003816549.1| - 0.078 13.1 0.1 0.15 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|302348911|ref|YP_003816549.1| - 0.079 12.6 0.2 0.57 9.8 0.0 2.4 3 0 0 3 3 3 0 Thymidylate kinase AAA_19 PF13245.6 gi|302348911|ref|YP_003816549.1| - 0.081 13.3 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|302348911|ref|YP_003816549.1| - 0.082 13.3 0.1 0.24 11.8 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain CbiA PF01656.23 gi|302348911|ref|YP_003816549.1| - 0.093 12.8 2.2 0.26 11.3 0.6 2.5 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 gi|302348911|ref|YP_003816549.1| - 0.093 12.4 0.9 0.57 9.9 0.9 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|302348911|ref|YP_003816549.1| - 0.15 12.0 0.0 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 NACHT domain CBS PF00571.28 gi|302348912|ref|YP_003816550.1| - 1.9e-48 162.7 9.2 8.7e-16 58.1 0.1 4.1 4 0 0 4 4 4 4 CBS domain IF3_N PF05198.16 gi|302348912|ref|YP_003816550.1| - 4.4e-05 23.7 2.0 3 8.2 0.0 4.2 4 0 0 4 4 4 2 Translation initiation factor IF-3, N-terminal domain PRC PF05239.16 gi|302348912|ref|YP_003816550.1| - 0.013 15.6 5.5 6.4 6.9 0.1 4.4 4 0 0 4 4 4 0 PRC-barrel domain Acetyltransf_1 PF00583.25 gi|302348912|ref|YP_003816550.1| - 0.041 14.1 0.0 52 4.1 0.0 3.6 2 1 2 4 4 4 0 Acetyltransferase (GNAT) family sCache_3_2 PF17203.4 gi|302348912|ref|YP_003816550.1| - 0.09 12.9 2.3 21 5.2 0.0 3.4 3 1 1 4 4 4 0 Single cache domain 3 Glyco_hydro_38 PF18438.1 gi|302348912|ref|YP_003816550.1| - 0.17 11.9 0.0 5.1 7.2 0.0 2.7 2 1 1 3 3 3 0 Glycosyl hydrolases family 38 C-terminal domain 1 DUF3659 PF12396.8 gi|302348912|ref|YP_003816550.1| - 0.22 11.5 4.6 38 4.3 0.1 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3659) CBS PF00571.28 gi|302348913|ref|YP_003816551.1| - 5.5e-47 158.0 7.7 2.8e-14 53.3 0.3 4.2 4 0 0 4 4 4 4 CBS domain EF-hand_like PF09279.11 gi|302348913|ref|YP_003816551.1| - 0.016 15.7 0.0 0.052 14.0 0.0 1.8 1 0 0 1 1 1 0 Phosphoinositide-specific phospholipase C, efhand-like CBS PF00571.28 gi|302348914|ref|YP_003816552.1| - 2.4e-46 156.0 2.4 2.7e-11 43.7 0.1 4.1 4 0 0 4 4 4 4 CBS domain HTH_11 PF08279.12 gi|302348915|ref|YP_003816553.1| - 0.15 12.0 0.0 0.62 10.0 0.0 2.0 1 1 1 2 2 2 0 HTH domain Spt4 PF06093.13 gi|302348917|ref|YP_003816555.1| - 0.0011 19.0 0.0 0.0012 18.9 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger LPD7 PF18821.1 gi|302348917|ref|YP_003816555.1| - 0.11 12.7 0.0 0.12 12.5 0.0 1.0 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 7 DUF359 PF04019.12 gi|302348918|ref|YP_003816556.1| - 1.9e-28 98.6 0.0 2.4e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) REV1_C PF16727.5 gi|302348919|ref|YP_003816557.1| - 0.088 13.2 0.1 0.093 13.1 0.1 1.1 1 0 0 1 1 1 0 DNA repair protein REV1 C-terminal domain Auto_anti-p27 PF06677.12 gi|302348920|ref|YP_003816558.1| - 0.0056 16.8 0.6 1.5 9.0 0.0 2.2 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RRN7 PF11781.8 gi|302348920|ref|YP_003816558.1| - 0.011 15.4 0.6 0.3 10.8 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_2 PF13240.6 gi|302348920|ref|YP_003816558.1| - 0.025 14.3 2.1 3.5 7.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-Sec23_Sec24 PF04810.15 gi|302348920|ref|YP_003816558.1| - 0.026 14.6 0.4 0.9 9.6 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-NADH-PPase PF09297.11 gi|302348920|ref|YP_003816558.1| - 0.028 14.1 2.8 4.2 7.1 0.5 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|302348920|ref|YP_003816558.1| - 0.029 13.8 1.8 1.8 8.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|302348920|ref|YP_003816558.1| - 0.041 13.8 0.1 6.1 6.8 0.0 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|302348920|ref|YP_003816558.1| - 0.042 13.9 0.4 0.28 11.2 0.5 2.0 1 1 1 2 2 2 0 Double zinc ribbon zf-ACC PF17848.1 gi|302348920|ref|YP_003816558.1| - 0.064 13.3 1.7 0.86 9.7 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_4 PF13717.6 gi|302348920|ref|YP_003816558.1| - 0.072 13.0 0.3 3 7.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|302348920|ref|YP_003816558.1| - 0.081 13.1 0.4 7.8 6.7 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|302348920|ref|YP_003816558.1| - 0.082 13.4 0.9 6.7 7.3 0.2 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.13 gi|302348920|ref|YP_003816558.1| - 0.086 12.5 2.7 1.9 8.2 1.3 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.6 gi|302348920|ref|YP_003816558.1| - 0.14 12.1 4.0 2.6 8.1 0.4 2.3 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|302348920|ref|YP_003816558.1| - 0.2 11.2 1.2 7.6 6.1 0.3 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-HYPF PF07503.12 gi|302348920|ref|YP_003816558.1| - 0.22 11.4 3.3 3 7.7 0.1 2.6 3 0 0 3 3 2 0 HypF finger zf-RING_7 PF02591.15 gi|302348920|ref|YP_003816558.1| - 0.31 11.3 3.3 0.91 9.8 0.4 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|302348920|ref|YP_003816558.1| - 1.6 8.8 5.9 0.75 9.9 1.1 2.4 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain RIO1 PF01163.22 gi|302348921|ref|YP_003816559.1| - 0.062 12.9 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 RIO1 family tRNA_NucTransf2 PF09249.11 gi|302348922|ref|YP_003816560.1| - 3e-41 140.2 0.0 4.9e-41 139.5 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|302348922|ref|YP_003816560.1| - 2.2e-10 40.7 0.0 8.2e-10 38.9 0.0 1.9 2 0 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|302348922|ref|YP_003816560.1| - 0.014 15.6 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain LigT_PEase PF02834.16 gi|302348923|ref|YP_003816561.1| - 5.2e-30 103.5 0.0 9.5e-16 57.8 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|302348923|ref|YP_003816561.1| - 4.2e-14 52.7 0.0 5.2e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|302348923|ref|YP_003816561.1| - 1.7e-13 50.9 0.0 5.2e-13 49.4 0.0 1.7 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Corona_NS2A PF05213.12 gi|302348923|ref|YP_003816561.1| - 0.022 14.1 0.0 0.029 13.7 0.0 1.1 1 0 0 1 1 1 0 Coronavirus NS2A protein SecD-TM1 PF13721.6 gi|302348923|ref|YP_003816561.1| - 0.18 12.3 0.0 25 5.4 0.0 2.1 2 0 0 2 2 2 0 SecD export protein N-terminal TM region dsDNA_bind PF01984.20 gi|302348924|ref|YP_003816562.1| - 1e-20 74.1 7.2 1.2e-20 73.8 7.2 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|302348924|ref|YP_003816562.1| - 0.0023 17.2 5.7 0.0028 17.0 5.7 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 CAMSAP_CC1 PF17095.5 gi|302348924|ref|YP_003816562.1| - 0.0038 17.0 6.5 0.0065 16.3 6.5 1.4 1 0 0 1 1 1 1 Spectrin-binding region of Ca2+-Calmodulin Rotamase_2 PF13145.6 gi|302348924|ref|YP_003816562.1| - 0.0041 18.0 0.7 0.005 17.7 0.7 1.1 1 0 0 1 1 1 1 PPIC-type PPIASE domain Cwf_Cwc_15 PF04889.12 gi|302348924|ref|YP_003816562.1| - 0.17 11.6 10.2 0.043 13.5 6.4 1.8 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein SseC PF04888.12 gi|302348924|ref|YP_003816562.1| - 0.18 11.4 1.6 0.31 10.6 0.7 1.7 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family Ribosomal_L39 PF00832.20 gi|302348925|ref|YP_003816563.1| - 2.1e-20 72.0 8.2 2.5e-20 71.8 8.2 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|302348926|ref|YP_003816564.1| - 1.3e-05 25.3 0.3 1.9e-05 24.8 0.2 1.3 1 1 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|302348927|ref|YP_003816565.1| - 3.2e-70 235.6 4.9 3.8e-70 235.3 4.9 1.1 1 0 0 1 1 1 1 eIF-6 family PriX PF18689.1 gi|302348928|ref|YP_003816566.1| - 3.9e-44 149.0 0.2 6.1e-44 148.4 0.1 1.4 2 0 0 2 2 2 1 Primase X Thy1 PF02511.15 gi|302348929|ref|YP_003816567.1| - 2.2e-59 200.4 0.8 3.3e-59 199.9 0.8 1.3 1 0 0 1 1 1 1 Thymidylate synthase complementing protein RNA_binding PF01877.17 gi|302348930|ref|YP_003816568.1| - 1.2e-26 93.4 0.7 1.5e-26 93.0 0.1 1.5 2 0 0 2 2 2 1 RNA binding Rad50_zn_hook PF04423.14 gi|302348930|ref|YP_003816568.1| - 0.16 11.8 1.2 1.1 9.2 0.6 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif Ribosomal_L15e PF00827.17 gi|302348931|ref|YP_003816569.1| - 2.8e-73 245.7 1.6 3.5e-73 245.4 1.6 1.1 1 0 0 1 1 1 1 Ribosomal L15 DUF4727 PF15856.5 gi|302348931|ref|YP_003816569.1| - 0.0054 16.3 0.0 0.0076 15.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4727) Rpn9_C PF18261.1 gi|302348931|ref|YP_003816569.1| - 0.1 12.2 0.2 0.18 11.5 0.2 1.3 1 0 0 1 1 1 0 Rpn9 C-terminal helix Brix PF04427.18 gi|302348933|ref|YP_003816571.1| - 0.0087 16.2 0.0 0.011 15.8 0.0 1.1 1 0 0 1 1 1 1 Brix domain Ribosomal_L37ae PF01780.19 gi|302348934|ref|YP_003816572.1| - 1.2e-29 102.3 3.3 1.3e-29 102.1 3.3 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|302348934|ref|YP_003816572.1| - 3.5e-07 30.1 1.0 5.2e-07 29.5 1.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|302348934|ref|YP_003816572.1| - 0.00033 20.1 0.3 0.00069 19.1 0.3 1.5 1 1 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|302348934|ref|YP_003816572.1| - 0.00066 20.0 0.5 0.00098 19.5 0.5 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|302348934|ref|YP_003816572.1| - 0.00092 19.1 0.5 0.00092 19.1 0.5 1.5 2 0 0 2 2 1 1 Putative transposase DNA-binding domain DUF4379 PF14311.6 gi|302348934|ref|YP_003816572.1| - 0.0088 16.4 2.5 0.18 12.2 0.6 2.2 2 0 0 2 2 2 1 Probable Zinc-ribbon domain CpXC PF14353.6 gi|302348934|ref|YP_003816572.1| - 0.043 13.9 1.2 0.21 11.6 0.0 1.9 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|302348934|ref|YP_003816572.1| - 0.047 13.8 0.3 1.9 8.7 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Kp4 PF09044.10 gi|302348934|ref|YP_003816572.1| - 0.083 13.0 0.6 0.22 11.6 0.0 1.8 1 1 1 2 2 2 0 Kp4 zf-ribbon_3 PF13248.6 gi|302348934|ref|YP_003816572.1| - 0.084 12.3 4.9 8 6.0 4.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S17_N PF16205.5 gi|302348934|ref|YP_003816572.1| - 0.11 12.9 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal_S17 N-terminal zinc_ribbon_4 PF13717.6 gi|302348934|ref|YP_003816572.1| - 0.35 10.8 3.8 2.5 8.1 3.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|302348934|ref|YP_003816572.1| - 0.41 10.4 2.6 10 5.9 0.2 2.1 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein HalOD2 PF18547.1 gi|302348934|ref|YP_003816572.1| - 0.5 10.3 7.0 1.6 8.7 7.0 1.9 1 1 0 1 1 1 0 Halobacterial output domain 2 zf-tcix PF14952.6 gi|302348934|ref|YP_003816572.1| - 1.2 8.8 6.8 0.52 10.0 1.1 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_5 PF13719.6 gi|302348934|ref|YP_003816572.1| - 1.6 8.5 6.0 5.9 6.7 6.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.8 gi|302348934|ref|YP_003816572.1| - 1.8 8.5 6.6 8 6.5 0.5 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNase_PH PF01138.21 gi|302348935|ref|YP_003816573.1| - 3.8e-31 108.3 0.0 5.6e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|302348935|ref|YP_003816573.1| - 1.8e-13 50.3 0.1 3.9e-13 49.2 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|302348936|ref|YP_003816574.1| - 1.2e-36 126.1 0.0 1.9e-36 125.5 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|302348936|ref|YP_003816574.1| - 6.2e-11 42.2 0.4 1.2e-10 41.3 0.4 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_2 PF07650.17 gi|302348937|ref|YP_003816575.1| - 7.2e-07 29.0 0.9 1.5e-06 27.9 0.6 1.7 1 1 0 1 1 1 1 KH domain KH_6 PF15985.5 gi|302348937|ref|YP_003816575.1| - 1.5e-06 28.5 0.1 2.6e-06 27.7 0.1 1.4 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|302348937|ref|YP_003816575.1| - 3.5e-06 26.8 1.9 8.8e-06 25.5 1.9 1.8 1 0 0 1 1 1 1 KH domain SBDS PF01172.18 gi|302348938|ref|YP_003816576.1| - 3.8e-23 81.4 0.3 1.2e-22 79.8 0.4 1.8 2 0 0 2 2 2 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|302348938|ref|YP_003816576.1| - 3.5e-19 68.9 0.1 6.5e-19 68.1 0.1 1.5 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|302348938|ref|YP_003816576.1| - 6.8e-05 22.8 0.0 0.00018 21.4 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G C-terminus Xin PF08043.12 gi|302348938|ref|YP_003816576.1| - 0.11 12.2 0.7 0.26 11.0 0.7 1.7 1 0 0 1 1 1 0 Xin repeat Proteasome PF00227.26 gi|302348939|ref|YP_003816577.1| - 3.6e-55 186.4 0.0 4.9e-55 186.0 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|302348939|ref|YP_003816577.1| - 4.7e-12 45.4 1.0 9.3e-12 44.4 0.4 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature DUF5371 PF17341.2 gi|302348939|ref|YP_003816577.1| - 0.13 12.4 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5371) Ribosomal_L24e PF01246.20 gi|302348940|ref|YP_003816578.1| - 1.5e-19 69.9 0.8 1.8e-19 69.7 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-MYND PF01753.18 gi|302348940|ref|YP_003816578.1| - 0.023 14.8 0.2 0.048 13.8 0.2 1.5 1 1 0 1 1 1 0 MYND finger Ta0938 PF11494.8 gi|302348940|ref|YP_003816578.1| - 0.027 14.7 0.0 0.029 14.6 0.0 1.1 1 0 0 1 1 1 0 Ta0938 zf-FLZ PF04570.14 gi|302348940|ref|YP_003816578.1| - 0.046 13.2 0.3 0.073 12.6 0.3 1.3 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 DUF3268 PF11672.8 gi|302348940|ref|YP_003816578.1| - 0.089 13.1 0.1 0.099 13.0 0.1 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain zf-HIT PF04438.16 gi|302348940|ref|YP_003816578.1| - 0.21 11.5 4.7 1.6 8.6 4.7 1.9 1 1 0 1 1 1 0 HIT zinc finger ZT_dimer PF16916.5 gi|302348941|ref|YP_003816579.1| - 6e-09 35.9 0.1 1.1e-08 35.0 0.1 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Cation_efflux PF01545.21 gi|302348941|ref|YP_003816579.1| - 0.00091 19.0 12.3 0.0014 18.4 12.3 1.2 1 0 0 1 1 1 1 Cation efflux family MARVEL PF01284.23 gi|302348941|ref|YP_003816579.1| - 0.18 11.9 4.0 0.085 12.9 0.7 2.0 1 1 1 2 2 2 0 Membrane-associating domain Cyt_bd_oxida_I PF01654.17 gi|302348942|ref|YP_003816580.1| - 3.6e-19 68.7 19.2 3.6e-19 68.7 19.2 2.4 1 1 0 2 2 2 1 Cytochrome bd terminal oxidase subunit I ODV-E18 PF10717.9 gi|302348942|ref|YP_003816580.1| - 0.05 13.5 0.6 0.17 11.8 0.6 2.0 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Cyt_bd_oxida_I PF01654.17 gi|302348943|ref|YP_003816581.1| - 2.2e-66 224.2 32.9 2.3e-65 220.8 32.9 1.9 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I DUF5305 PF17231.2 gi|302348943|ref|YP_003816581.1| - 0.22 10.9 1.3 0.24 10.8 0.0 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5305) tRNA-synt_1 PF00133.22 gi|302348946|ref|YP_003816584.1| - 5.9e-63 213.1 0.8 2.6e-47 161.4 0.0 3.1 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|302348946|ref|YP_003816584.1| - 8.8e-24 84.0 0.0 6.3e-11 41.6 0.0 4.1 4 0 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|302348946|ref|YP_003816584.1| - 1.2e-22 80.5 0.3 2.5e-22 79.5 0.3 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|302348946|ref|YP_003816584.1| - 1.7e-11 44.0 0.0 3e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|302348946|ref|YP_003816584.1| - 2.8e-09 36.8 0.0 1.7e-05 24.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|302348946|ref|YP_003816584.1| - 0.028 13.3 0.1 0.48 9.3 0.0 2.9 3 1 1 4 4 4 0 tRNA synthetases class I (K) HD_3 PF13023.6 gi|302348947|ref|YP_003816585.1| - 1.4e-14 54.3 0.0 2.4e-14 53.6 0.0 1.3 1 1 0 1 1 1 1 HD domain HD PF01966.22 gi|302348947|ref|YP_003816585.1| - 1.2e-07 32.0 0.0 1.5e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|302348947|ref|YP_003816585.1| - 6e-07 29.4 0.0 9.2e-07 28.8 0.0 1.4 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HDOD PF08668.12 gi|302348947|ref|YP_003816585.1| - 4.6e-05 23.0 0.0 6.8e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 HDOD domain DUF763 PF05559.11 gi|302348948|ref|YP_003816586.1| - 8e-95 317.6 0.0 9.5e-95 317.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH PF00633.23 gi|302348948|ref|YP_003816586.1| - 0.045 13.6 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif HRDC PF00570.23 gi|302348948|ref|YP_003816586.1| - 0.25 11.4 1.3 1.2 9.2 0.0 2.4 2 0 0 2 2 2 0 HRDC domain Metallophos_2 PF12850.7 gi|302348949|ref|YP_003816587.1| - 3.5e-13 50.1 0.0 4.8e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|302348949|ref|YP_003816587.1| - 7.2e-10 38.6 0.1 2.7e-09 36.7 0.1 1.8 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|302348949|ref|YP_003816587.1| - 1.4e-05 25.7 0.7 0.00049 20.7 0.7 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase UPF0047 PF01894.17 gi|302348950|ref|YP_003816588.1| - 1.6e-32 112.1 0.0 1.9e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Luciferase_N PF05295.11 gi|302348950|ref|YP_003816588.1| - 0.15 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Luciferase/LBP N-terminal domain RibD_C PF01872.17 gi|302348951|ref|YP_003816589.1| - 7.9e-44 149.9 0.0 9e-44 149.7 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain ATP_sub_h PF10775.9 gi|302348951|ref|YP_003816589.1| - 0.025 14.6 0.0 0.088 12.8 0.0 1.8 2 0 0 2 2 2 0 ATP synthase complex subunit h Radical_SAM PF04055.21 gi|302348952|ref|YP_003816590.1| - 1.1e-19 71.4 0.0 1.1e-19 71.4 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|302348952|ref|YP_003816590.1| - 1.9e-08 34.5 0.4 1.2e-07 31.9 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|302348952|ref|YP_003816590.1| - 2.2e-06 28.0 0.9 1.1e-05 25.7 0.9 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain BKACE PF05853.12 gi|302348952|ref|YP_003816590.1| - 0.052 12.8 0.0 0.086 12.1 0.0 1.2 1 0 0 1 1 1 0 beta-keto acid cleavage enzyme Thioredoxin PF00085.20 gi|302348953|ref|YP_003816591.1| - 3.2e-19 68.8 0.0 4e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|302348953|ref|YP_003816591.1| - 2.9e-08 34.1 0.1 4e-07 30.5 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|302348953|ref|YP_003816591.1| - 2e-06 27.4 0.0 2.3e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_8 PF13905.6 gi|302348953|ref|YP_003816591.1| - 1.9e-05 24.9 0.2 0.0024 18.2 0.1 2.3 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_7 PF13899.6 gi|302348953|ref|YP_003816591.1| - 0.00049 20.2 0.0 0.00075 19.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|302348953|ref|YP_003816591.1| - 0.0028 17.4 0.0 0.0036 17.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.21 gi|302348953|ref|YP_003816591.1| - 0.0033 17.3 0.2 0.0085 16.0 0.1 1.6 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|302348953|ref|YP_003816591.1| - 0.0034 17.1 0.8 0.42 10.3 0.1 2.1 1 1 1 2 2 2 2 Redoxin Thioredoxin_3 PF13192.6 gi|302348953|ref|YP_003816591.1| - 0.0062 16.6 0.0 0.0097 15.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.11 gi|302348953|ref|YP_003816591.1| - 0.056 13.4 0.0 0.11 12.4 0.0 1.5 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE Glutaredoxin PF00462.24 gi|302348953|ref|YP_003816591.1| - 0.16 12.2 0.2 0.47 10.7 0.2 1.9 1 1 0 1 1 1 0 Glutaredoxin PGM_PMM_I PF02878.16 gi|302348954|ref|YP_003816592.1| - 1.9e-30 105.4 0.1 4.1e-30 104.3 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|302348954|ref|YP_003816592.1| - 7.8e-21 74.6 0.0 1.7e-20 73.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|302348954|ref|YP_003816592.1| - 1.8e-11 44.0 2.3 6.7e-11 42.2 0.1 2.6 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|302348954|ref|YP_003816592.1| - 0.0054 16.9 0.1 0.058 13.6 0.1 2.3 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III QRPTase_C PF01729.19 gi|302348956|ref|YP_003816594.1| - 3.9e-19 69.1 0.0 5.7e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|302348956|ref|YP_003816594.1| - 6.8e-06 26.5 0.0 1.7e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|302348956|ref|YP_003816594.1| - 0.0086 16.1 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain ATPase PF06745.13 gi|302348958|ref|YP_003816596.1| - 1.1e-55 188.5 0.0 1.3e-55 188.3 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|302348958|ref|YP_003816596.1| - 7.3e-07 28.2 0.0 1e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.21 gi|302348958|ref|YP_003816596.1| - 7.4e-07 28.9 0.0 9.9e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|302348958|ref|YP_003816596.1| - 8.4e-07 28.7 0.1 2.2e-06 27.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|302348958|ref|YP_003816596.1| - 1.9e-06 27.4 0.0 2.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Rad51 IstB_IS21 PF01695.17 gi|302348958|ref|YP_003816596.1| - 1.4e-05 24.9 0.0 7.6e-05 22.5 0.0 2.2 2 1 1 3 3 3 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|302348958|ref|YP_003816596.1| - 3.6e-05 23.2 0.0 5.3e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain MEDS PF14417.6 gi|302348958|ref|YP_003816596.1| - 7.8e-05 22.6 0.1 0.00012 22.0 0.1 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_24 PF13479.6 gi|302348958|ref|YP_003816596.1| - 0.00039 20.2 0.1 0.00069 19.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|302348958|ref|YP_003816596.1| - 0.00062 20.0 0.0 0.00098 19.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|302348958|ref|YP_003816596.1| - 0.004 16.6 0.0 0.0065 15.9 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein PAXNEB PF05625.11 gi|302348958|ref|YP_003816596.1| - 0.0043 16.2 0.0 0.0085 15.3 0.0 1.4 2 0 0 2 2 2 1 PAXNEB protein AAA_14 PF13173.6 gi|302348958|ref|YP_003816596.1| - 0.01 15.9 0.1 0.018 15.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|302348958|ref|YP_003816596.1| - 0.011 15.0 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|302348958|ref|YP_003816596.1| - 0.015 15.7 0.1 0.028 14.8 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF643 PF04867.12 gi|302348958|ref|YP_003816596.1| - 0.056 14.1 0.5 16 6.2 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF643) T2SSE PF00437.20 gi|302348958|ref|YP_003816596.1| - 0.058 12.5 0.0 0.085 11.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|302348958|ref|YP_003816596.1| - 0.066 13.2 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) GTP_EFTU_D2 PF03144.25 gi|302348958|ref|YP_003816596.1| - 0.074 13.4 0.1 0.19 12.1 0.1 1.7 1 0 0 1 1 1 0 Elongation factor Tu domain 2 NACHT PF05729.12 gi|302348958|ref|YP_003816596.1| - 0.13 12.1 0.0 0.36 10.7 0.0 1.8 1 1 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.26 gi|302348958|ref|YP_003816596.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AdoMet_Synthase PF01941.19 gi|302348959|ref|YP_003816597.1| - 1.8e-169 563.8 0.0 2e-169 563.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF460 PF04312.13 gi|302348960|ref|YP_003816598.1| - 4.2e-46 156.1 0.0 1.3e-45 154.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|302348960|ref|YP_003816598.1| - 3.7e-06 27.3 0.4 3.7e-06 27.3 0.4 2.3 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor HALZ PF02183.18 gi|302348960|ref|YP_003816598.1| - 0.04 14.1 9.0 0.7 10.2 0.6 2.9 2 0 0 2 2 2 0 Homeobox associated leucine zipper baeRF_family10 PF18854.1 gi|302348960|ref|YP_003816598.1| - 0.041 14.1 0.0 0.13 12.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 10 Pox_A_type_inc PF04508.12 gi|302348960|ref|YP_003816598.1| - 0.071 13.0 0.1 0.071 13.0 0.1 4.0 4 0 0 4 4 4 0 Viral A-type inclusion protein repeat bZIP_1 PF00170.21 gi|302348960|ref|YP_003816598.1| - 0.077 13.1 8.6 0.21 11.7 1.4 3.2 3 0 0 3 3 3 0 bZIP transcription factor Cob_adeno_trans PF01923.18 gi|302348960|ref|YP_003816598.1| - 0.66 10.1 5.5 16 5.6 0.3 2.3 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Prominin PF05478.11 gi|302348960|ref|YP_003816598.1| - 0.84 7.5 5.5 1.2 7.0 5.5 1.1 1 0 0 1 1 1 0 Prominin FlaC_arch PF05377.11 gi|302348960|ref|YP_003816598.1| - 0.94 9.9 6.2 0.68 10.4 0.2 3.1 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) FapA PF03961.13 gi|302348960|ref|YP_003816598.1| - 1 7.9 12.7 4.5 5.8 7.5 2.2 1 1 1 2 2 2 0 Flagellar Assembly Protein A ZapB PF06005.12 gi|302348960|ref|YP_003816598.1| - 1.5 9.3 13.3 0.081 13.4 1.1 3.4 3 0 0 3 3 3 0 Cell division protein ZapB Sec2p PF06428.11 gi|302348960|ref|YP_003816598.1| - 2.2 8.3 16.7 0.08 12.9 8.7 2.7 3 0 0 3 3 3 0 GDP/GTP exchange factor Sec2p Snapin_Pallidin PF14712.6 gi|302348960|ref|YP_003816598.1| - 2.4 8.7 13.3 0.067 13.6 0.9 3.6 3 1 0 3 3 3 0 Snapin/Pallidin Prefoldin PF02996.17 gi|302348960|ref|YP_003816598.1| - 2.4 8.1 11.2 0.52 10.2 0.5 3.5 3 0 0 3 3 3 0 Prefoldin subunit EMP24_GP25L PF01105.24 gi|302348960|ref|YP_003816598.1| - 3.5 7.5 7.9 6.5e+02 0.1 7.9 2.7 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF1664 PF07889.12 gi|302348960|ref|YP_003816598.1| - 5.7 7.0 8.0 4.5 7.3 1.8 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Atg14 PF10186.9 gi|302348960|ref|YP_003816598.1| - 8.7 5.3 14.4 75 2.2 14.2 2.1 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc24 PF08286.11 gi|302348960|ref|YP_003816598.1| - 9 6.6 11.6 0.84 9.9 0.8 3.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 NBP1 PF08537.10 gi|302348960|ref|YP_003816598.1| - 9.6 5.5 11.4 4 6.7 4.6 2.2 1 1 1 2 2 2 0 Fungal Nap binding protein NBP1 RIO1 PF01163.22 gi|302348961|ref|YP_003816599.1| - 1.2e-36 126.0 0.0 1.8e-36 125.6 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase_fungal PF17667.1 gi|302348961|ref|YP_003816599.1| - 3.2e-09 36.1 0.0 3.8e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Fungal protein kinase Rio2_N PF09202.11 gi|302348961|ref|YP_003816599.1| - 2.3e-07 30.9 0.0 1e-06 28.8 0.0 2.1 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.23 gi|302348961|ref|YP_003816599.1| - 1.5e-06 28.3 0.3 0.0025 17.8 0.3 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|302348961|ref|YP_003816599.1| - 2.9e-05 23.5 0.0 0.0001 21.7 0.0 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|302348961|ref|YP_003816599.1| - 0.00069 19.1 0.1 0.0021 17.5 0.1 1.7 1 1 0 1 1 1 1 Protein kinase domain Smr PF01713.21 gi|302348961|ref|YP_003816599.1| - 0.11 12.9 0.0 0.25 11.7 0.0 1.6 1 0 0 1 1 1 0 Smr domain HTH_20 PF12840.7 gi|302348962|ref|YP_003816600.1| - 6.6e-11 42.1 0.0 9.7e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|302348962|ref|YP_003816600.1| - 8.9e-10 38.3 0.1 1.3e-09 37.7 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|302348962|ref|YP_003816600.1| - 8.9e-07 28.4 0.5 1.5e-06 27.7 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|302348962|ref|YP_003816600.1| - 5.5e-06 26.2 0.0 8.9e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|302348962|ref|YP_003816600.1| - 0.00024 20.9 0.0 0.00033 20.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|302348962|ref|YP_003816600.1| - 0.00037 20.3 0.1 0.00053 19.8 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|302348962|ref|YP_003816600.1| - 0.00089 19.4 0.0 0.0024 18.0 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DprA_WH PF17782.1 gi|302348962|ref|YP_003816600.1| - 0.003 17.6 0.0 0.0043 17.1 0.0 1.2 1 0 0 1 1 1 1 DprA winged helix domain HTH_34 PF13601.6 gi|302348962|ref|YP_003816600.1| - 0.0032 17.6 0.1 0.0057 16.8 0.1 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|302348962|ref|YP_003816600.1| - 0.0041 17.0 0.1 0.0059 16.5 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|302348962|ref|YP_003816600.1| - 0.0046 16.9 0.0 0.0064 16.4 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|302348962|ref|YP_003816600.1| - 0.0088 16.5 0.0 0.013 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Nuc_N PF14448.6 gi|302348962|ref|YP_003816600.1| - 0.015 15.1 1.8 0.24 11.3 0.3 2.2 1 1 1 2 2 2 0 Nuclease N terminal Rrf2 PF02082.20 gi|302348962|ref|YP_003816600.1| - 0.015 15.6 0.1 0.025 14.9 0.1 1.4 1 1 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|302348962|ref|YP_003816600.1| - 0.019 14.7 0.0 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_47 PF16221.5 gi|302348962|ref|YP_003816600.1| - 0.065 12.8 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 winged helix-turn-helix DUF1670 PF07900.11 gi|302348962|ref|YP_003816600.1| - 0.072 12.4 0.0 0.088 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) Nitrophorin PF02087.15 gi|302348962|ref|YP_003816600.1| - 0.087 12.8 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Nitrophorin Stk19 PF10494.9 gi|302348962|ref|YP_003816600.1| - 0.09 12.4 0.2 0.11 12.2 0.2 1.2 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 MFS_1 PF07690.16 gi|302348964|ref|YP_003816602.1| - 1e-41 143.0 58.6 7.5e-32 110.6 33.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|302348964|ref|YP_003816602.1| - 3.7e-11 42.6 13.8 3.7e-11 42.6 13.8 2.9 1 1 0 2 2 2 1 Sugar (and other) transporter OATP PF03137.20 gi|302348964|ref|YP_003816602.1| - 0.08 11.2 13.4 0.0084 14.4 3.1 2.6 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family NPCBM_assoc PF10633.9 gi|302348965|ref|YP_003816603.1| - 1e-05 25.7 0.6 0.22 11.8 0.0 4.0 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase Sigma_reg_N PF13800.6 gi|302348965|ref|YP_003816603.1| - 5.3 7.4 5.9 1.7 9.0 0.1 2.8 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Gram_pos_anchor PF00746.21 gi|302348965|ref|YP_003816603.1| - 8.8 6.4 7.1 2.6 8.1 0.3 2.6 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF1641 PF07849.11 gi|302348966|ref|YP_003816604.1| - 4.7e-14 52.0 0.5 4.7e-14 52.0 0.5 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.14 gi|302348967|ref|YP_003816605.1| - 5.5e-17 61.9 0.0 9.4e-17 61.2 0.0 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|302348967|ref|YP_003816605.1| - 5e-06 27.0 0.0 0.00022 21.7 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|302348967|ref|YP_003816605.1| - 0.042 12.7 0.1 0.075 11.9 0.1 1.4 1 0 0 1 1 1 0 Tryptophan halogenase DUF1641 PF07849.11 gi|302348968|ref|YP_003816606.1| - 1.3e-06 28.2 2.1 1.4e-06 28.1 0.5 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) SEN1_N PF12726.7 gi|302348968|ref|YP_003816606.1| - 0.031 12.5 0.7 0.11 10.7 0.2 1.8 1 1 1 2 2 2 0 SEN1 N terminal tRNA-synt_His PF13393.6 gi|302348968|ref|YP_003816606.1| - 0.12 11.7 2.7 3 7.0 0.1 2.0 1 1 1 2 2 2 0 Histidyl-tRNA synthetase PTS_EIIA_2 PF00359.22 gi|302348968|ref|YP_003816606.1| - 0.24 11.3 1.9 9.2 6.2 0.0 2.8 1 1 2 3 3 3 0 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RP-C_C PF11800.8 gi|302348968|ref|YP_003816606.1| - 0.26 11.4 0.1 0.26 11.4 0.1 1.5 2 0 0 2 2 2 0 Replication protein C C-terminal region Pyr_redox_2 PF07992.14 gi|302348969|ref|YP_003816607.1| - 1.8e-17 63.5 0.1 1.2e-11 44.5 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|302348969|ref|YP_003816607.1| - 0.00014 22.4 0.0 0.16 12.6 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|302348969|ref|YP_003816607.1| - 0.00024 21.1 0.2 0.47 10.4 0.0 2.7 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|302348969|ref|YP_003816607.1| - 0.00043 20.5 0.1 0.001 19.2 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|302348969|ref|YP_003816607.1| - 0.0008 18.8 0.0 0.0029 16.9 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|302348969|ref|YP_003816607.1| - 0.0012 18.0 0.2 0.011 14.9 0.1 2.0 1 1 0 2 2 2 1 Lycopene cyclase protein HI0933_like PF03486.14 gi|302348969|ref|YP_003816607.1| - 0.0023 16.7 0.0 0.023 13.4 0.0 2.2 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|302348969|ref|YP_003816607.1| - 0.0024 17.5 0.3 0.021 14.4 0.2 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|302348969|ref|YP_003816607.1| - 0.0038 16.4 0.0 0.0059 15.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|302348969|ref|YP_003816607.1| - 0.018 14.4 0.1 0.12 11.7 0.1 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase ApbA PF02558.16 gi|302348969|ref|YP_003816607.1| - 0.024 14.3 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|302348969|ref|YP_003816607.1| - 0.074 12.1 1.0 5.3 6.0 0.2 2.2 1 1 1 2 2 2 0 Glucose inhibited division protein A RBD PF02196.15 gi|302348969|ref|YP_003816607.1| - 0.077 13.1 0.0 1.2 9.2 0.0 2.6 2 1 0 2 2 2 0 Raf-like Ras-binding domain Thi4 PF01946.17 gi|302348969|ref|YP_003816607.1| - 0.086 12.1 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Thi4 family Pyr_redox_3 PF13738.6 gi|302348969|ref|YP_003816607.1| - 0.12 11.6 0.0 0.4 9.9 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|302348969|ref|YP_003816607.1| - 0.18 10.6 0.2 0.36 9.6 0.1 1.5 2 0 0 2 2 2 0 Tryptophan halogenase DrsE_2 PF13686.6 gi|302348970|ref|YP_003816608.1| - 2.1e-21 76.4 0.6 8.6e-12 45.2 0.3 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|302348970|ref|YP_003816608.1| - 2.1e-07 31.3 0.0 3.2e-07 30.7 0.0 1.3 1 1 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.10 gi|302348970|ref|YP_003816608.1| - 0.0049 16.6 0.5 0.24 11.2 0.1 2.5 2 0 0 2 2 2 1 Anti-repressor SinI AAA_assoc_C PF09821.9 gi|302348971|ref|YP_003816609.1| - 4.1e-18 66.0 0.0 4.6e-18 65.9 0.0 1.0 1 0 0 1 1 1 1 C-terminal AAA-associated domain HemN_C PF06969.16 gi|302348971|ref|YP_003816609.1| - 0.06 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain DUF2067 PF09840.9 gi|302348971|ref|YP_003816609.1| - 0.098 12.2 0.0 0.63 9.6 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) RNA_pol_Rpb5_C PF01191.19 gi|302348972|ref|YP_003816610.1| - 5.4e-26 90.3 0.0 5.9e-26 90.1 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.28 gi|302348973|ref|YP_003816611.1| - 2.7e-128 428.4 0.1 3.8e-128 427.9 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|302348973|ref|YP_003816611.1| - 1.4e-47 161.9 0.0 2.1e-47 161.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 gi|302348973|ref|YP_003816611.1| - 4.1e-30 104.0 0.0 1.2e-29 102.6 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.14 gi|302348973|ref|YP_003816611.1| - 2e-29 102.6 0.1 3.4e-29 101.8 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|302348973|ref|YP_003816611.1| - 1.1e-26 92.8 0.0 3.2e-26 91.3 0.0 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|302348973|ref|YP_003816611.1| - 1.3e-19 70.3 0.1 3.6e-19 68.8 0.1 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|302348973|ref|YP_003816611.1| - 1.9e-07 31.5 0.0 5.4e-07 30.1 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.12 gi|302348974|ref|YP_003816612.1| - 4.3e-79 266.1 0.0 5.8e-79 265.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|302348974|ref|YP_003816612.1| - 5.8e-72 241.3 0.0 1.1e-71 240.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|302348974|ref|YP_003816612.1| - 2.6e-38 131.4 0.0 5.2e-38 130.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|302348974|ref|YP_003816612.1| - 3.8e-31 107.2 0.0 9.5e-31 105.9 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|302348974|ref|YP_003816612.1| - 2.5e-28 99.3 0.1 4.5e-28 98.4 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Zn-ribbon_8 PF09723.10 gi|302348974|ref|YP_003816612.1| - 0.13 12.4 3.3 2.4 8.3 0.1 3.1 3 0 0 3 3 3 0 Zinc ribbon domain MnmE_helical PF12631.7 gi|302348974|ref|YP_003816612.1| - 0.17 12.0 0.0 16 5.6 0.0 2.4 2 0 0 2 2 2 0 MnmE helical domain DZR PF12773.7 gi|302348974|ref|YP_003816612.1| - 0.19 11.8 1.3 3 8.0 1.3 2.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|302348974|ref|YP_003816612.1| - 0.21 11.1 6.5 1.8 8.1 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|302348974|ref|YP_003816612.1| - 0.46 10.4 2.7 1.6 8.7 0.0 2.8 3 0 0 3 3 3 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|302348974|ref|YP_003816612.1| - 6.6 6.7 10.2 4.3 7.3 0.0 3.7 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNA_pol_Rpb1_5 PF04998.17 gi|302348975|ref|YP_003816613.1| - 3.8e-57 193.7 0.5 5e-57 193.4 0.5 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 BacteriocIIc_cy PF12173.8 gi|302348975|ref|YP_003816613.1| - 0.058 13.7 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like LsmAD PF06741.13 gi|302348975|ref|YP_003816613.1| - 0.32 11.6 5.0 1.5 9.4 0.1 3.4 4 0 0 4 4 4 0 LsmAD domain Ribosomal_L7Ae PF01248.26 gi|302348976|ref|YP_003816614.1| - 3.9e-19 68.2 0.0 4.3e-19 68.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_5 PF13184.6 gi|302348977|ref|YP_003816615.1| - 6.2e-14 51.8 4.5 1.4e-11 44.3 0.4 2.3 2 0 0 2 2 2 2 NusA-like KH domain KH_2 PF07650.17 gi|302348977|ref|YP_003816615.1| - 1.6e-12 47.1 4.6 3e-07 30.2 0.2 2.1 1 1 1 2 2 2 2 KH domain KH_4 PF13083.6 gi|302348977|ref|YP_003816615.1| - 6.9e-11 41.9 1.8 1.3e-05 24.9 0.2 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|302348977|ref|YP_003816615.1| - 7.2e-05 22.5 0.2 0.032 14.0 0.0 2.5 2 0 0 2 2 2 2 KH domain Ribosom_S12_S23 PF00164.25 gi|302348978|ref|YP_003816616.1| - 2.2e-45 152.9 0.7 3e-45 152.5 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S12/S23 DNase-RNase PF02577.14 gi|302348979|ref|YP_003816617.1| - 3.2e-09 36.5 0.0 4.3e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease Vault_4 PF17796.1 gi|302348979|ref|YP_003816617.1| - 0.027 14.5 0.0 0.068 13.3 0.0 1.6 1 0 0 1 1 1 0 Major Vault Protein repeat domain Ribosomal_S7 PF00177.21 gi|302348980|ref|YP_003816618.1| - 2.8e-43 147.1 0.2 3.5e-43 146.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e ADH_zinc_N PF00107.26 gi|302348980|ref|YP_003816618.1| - 0.15 12.1 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase GTP_EFTU PF00009.27 gi|302348981|ref|YP_003816619.1| - 2e-55 187.3 0.0 2.9e-55 186.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|302348981|ref|YP_003816619.1| - 8.9e-37 125.8 0.0 2.8e-36 124.2 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|302348981|ref|YP_003816619.1| - 8.4e-18 64.5 3.2 1.8e-17 63.5 3.2 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|302348981|ref|YP_003816619.1| - 1.7e-05 24.6 2.8 4.6e-05 23.2 2.8 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|302348981|ref|YP_003816619.1| - 3.1e-05 24.0 0.1 0.00026 21.0 0.1 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase Amelogenin PF02948.15 gi|302348981|ref|YP_003816619.1| - 0.0037 17.9 1.6 0.0039 17.8 0.3 1.6 2 0 0 2 2 2 1 Amelogenin Ras PF00071.22 gi|302348981|ref|YP_003816619.1| - 0.031 13.9 0.3 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 Ras family Septin PF00735.18 gi|302348981|ref|YP_003816619.1| - 0.082 12.2 0.0 0.2 10.9 0.0 1.6 1 1 0 1 1 1 0 Septin Ribosomal_S10 PF00338.22 gi|302348982|ref|YP_003816620.1| - 1.2e-28 99.2 0.1 1.3e-28 99.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e DNA_ligase_A_M PF01068.21 gi|302348983|ref|YP_003816621.1| - 2.7e-62 210.0 0.1 3.8e-62 209.6 0.1 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|302348983|ref|YP_003816621.1| - 2.3e-33 116.0 0.0 4.9e-33 114.9 0.0 1.6 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|302348983|ref|YP_003816621.1| - 5.1e-24 84.8 0.0 1.1e-23 83.7 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.6 gi|302348983|ref|YP_003816621.1| - 0.0044 17.0 1.7 0.081 13.0 0.0 2.8 3 0 0 3 3 3 1 DNA ligase OB-like domain CdAMP_rec PF06153.11 gi|302348983|ref|YP_003816621.1| - 0.016 15.4 0.0 0.037 14.2 0.0 1.6 1 0 0 1 1 1 0 Cyclic-di-AMP receptor Rpr2 PF04032.16 gi|302348984|ref|YP_003816622.1| - 1.2e-15 57.6 0.2 1.4e-15 57.3 0.2 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain ArsA_HSP20 PF17886.1 gi|302348984|ref|YP_003816622.1| - 0.096 12.3 0.2 0.28 10.8 0.1 1.7 1 1 1 2 2 2 0 HSP20-like domain found in ArsA adh_short_C2 PF13561.6 gi|302348985|ref|YP_003816623.1| - 2e-61 207.6 0.1 2.5e-61 207.2 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|302348985|ref|YP_003816623.1| - 2.2e-57 193.7 0.0 2.7e-57 193.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|302348985|ref|YP_003816623.1| - 4.9e-16 59.1 0.1 7.8e-16 58.5 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|302348985|ref|YP_003816623.1| - 0.0026 17.3 0.0 0.0048 16.4 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|302348985|ref|YP_003816623.1| - 0.045 13.1 0.2 0.12 11.7 0.0 1.8 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Methyltrn_RNA_3 PF02598.17 gi|302348986|ref|YP_003816624.1| - 2.3e-34 119.2 0.0 4.1e-34 118.4 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|302348986|ref|YP_003816624.1| - 0.12 12.6 0.0 1.4 9.1 0.0 2.1 2 0 0 2 2 2 0 SpoU rRNA Methylase family PEP_mutase PF13714.6 gi|302348988|ref|YP_003816626.1| - 6.9e-61 205.7 1.1 8.1e-61 205.5 1.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|302348988|ref|YP_003816626.1| - 1.8e-15 56.5 1.1 9.1e-15 54.1 1.0 1.7 1 1 1 2 2 2 2 Isocitrate lyase family MR_MLE_C PF13378.6 gi|302348988|ref|YP_003816626.1| - 0.0002 21.0 0.4 0.0003 20.4 0.4 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like PadR PF03551.14 gi|302348989|ref|YP_003816627.1| - 9.8e-08 31.9 0.0 2.2e-07 30.8 0.0 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family Mrr_N PF14338.6 gi|302348989|ref|YP_003816627.1| - 0.0024 18.0 0.0 0.052 13.7 0.0 2.3 1 1 1 2 2 2 1 Mrr N-terminal domain RTP PF02334.16 gi|302348989|ref|YP_003816627.1| - 0.0056 17.3 0.1 0.0086 16.7 0.1 1.4 1 1 0 1 1 1 1 Replication terminator protein MarR PF01047.22 gi|302348989|ref|YP_003816627.1| - 0.02 14.8 0.0 0.049 13.6 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|302348989|ref|YP_003816627.1| - 0.024 14.6 0.1 0.041 13.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|302348989|ref|YP_003816627.1| - 0.056 13.2 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) zf-Di19 PF05605.12 gi|302348990|ref|YP_003816628.1| - 0.0073 16.6 0.1 0.013 15.8 0.1 1.4 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.6 gi|302348990|ref|YP_003816628.1| - 0.0098 16.7 0.0 0.021 15.7 0.0 1.6 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_9 PF16293.5 gi|302348990|ref|YP_003816628.1| - 0.041 13.7 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 C2H2 type zinc-finger (1 copy) zf-C2H2 PF00096.26 gi|302348990|ref|YP_003816628.1| - 0.047 14.2 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 Zinc finger, C2H2 type Diphthamide_syn PF01866.17 gi|302348991|ref|YP_003816629.1| - 2.2e-67 227.6 0.0 2.7e-67 227.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Amdase PF17645.1 gi|302348991|ref|YP_003816629.1| - 0.0047 16.6 0.3 0.011 15.4 0.1 1.6 2 0 0 2 2 2 1 Arylmalonate decarboxylase PrmA PF06325.13 gi|302348992|ref|YP_003816630.1| - 5.7e-05 22.7 0.0 7.1e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|302348992|ref|YP_003816630.1| - 0.00029 20.4 0.0 0.00037 20.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|302348992|ref|YP_003816630.1| - 0.0009 18.9 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|302348992|ref|YP_003816630.1| - 0.052 14.3 0.0 0.081 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|302348992|ref|YP_003816630.1| - 0.062 13.0 0.0 0.082 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 zf-ribbon_3 PF13248.6 gi|302348993|ref|YP_003816631.1| - 0.00081 18.7 1.3 0.0015 17.8 1.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Anti-TRAP PF15777.5 gi|302348993|ref|YP_003816631.1| - 0.0013 18.6 0.2 0.0023 17.8 0.2 1.3 1 0 0 1 1 1 1 Tryptophan RNA-binding attenuator protein inhibitory protein ECR1_N PF14382.6 gi|302348993|ref|YP_003816631.1| - 0.0017 18.1 0.2 0.0053 16.5 0.2 2.0 1 1 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region OrfB_Zn_ribbon PF07282.11 gi|302348993|ref|YP_003816631.1| - 0.0044 16.9 0.4 0.0081 16.1 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS91 PF14319.6 gi|302348993|ref|YP_003816631.1| - 0.023 14.7 0.0 0.033 14.2 0.0 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain EXOSC1 PF10447.9 gi|302348993|ref|YP_003816631.1| - 0.036 14.7 0.2 5 7.8 0.0 2.4 1 1 1 2 2 2 0 Exosome component EXOSC1/CSL4 DZR PF12773.7 gi|302348993|ref|YP_003816631.1| - 0.037 14.0 0.2 0.055 13.5 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|302348993|ref|YP_003816631.1| - 0.068 13.1 2.2 0.91 9.5 0.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|302348993|ref|YP_003816631.1| - 0.11 12.5 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|302348993|ref|YP_003816631.1| - 0.73 9.5 3.6 2 8.2 3.6 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|302348993|ref|YP_003816631.1| - 1.3 8.6 7.2 8.9 5.9 0.5 2.7 2 1 1 3 3 3 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|302348993|ref|YP_003816631.1| - 1.9 8.6 3.4 6.4 7.0 0.3 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_2 PF13240.6 gi|302348993|ref|YP_003816631.1| - 2.1 8.2 4.4 15 5.5 4.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF2067 PF09840.9 gi|302348994|ref|YP_003816632.1| - 2.1e-45 154.6 1.0 2.3e-45 154.4 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) Cas_Csa5 PF09702.10 gi|302348994|ref|YP_003816632.1| - 0.015 15.6 0.9 0.068 13.4 0.3 2.1 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csa5) SUI1 PF01253.22 gi|302348994|ref|YP_003816632.1| - 0.11 13.0 0.0 0.37 11.3 0.0 1.8 2 0 0 2 2 2 0 Translation initiation factor SUI1 RNA_pol_L_2 PF13656.6 gi|302348995|ref|YP_003816633.1| - 5.5e-17 61.3 0.0 6.4e-17 61.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|302348995|ref|YP_003816633.1| - 0.015 14.7 0.1 0.13 11.8 0.1 2.1 1 1 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain PBP_like PF12727.7 gi|302348997|ref|YP_003816635.1| - 3.7e-08 32.7 0.0 4.5e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|302348998|ref|YP_003816636.1| - 3.8e-43 147.0 0.3 6.4e-43 146.2 0.3 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.7 gi|302348998|ref|YP_003816636.1| - 1.1e-28 99.6 0.0 2.1e-28 98.8 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoCF_biosynth PF00994.24 gi|302348998|ref|YP_003816636.1| - 2.3e-22 79.2 0.1 4.5e-22 78.3 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|302348998|ref|YP_003816636.1| - 9.6e-12 44.9 0.0 4.8e-11 42.7 0.0 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Fil_haemagg PF05594.14 gi|302348998|ref|YP_003816636.1| - 0.011 16.3 0.0 0.03 14.9 0.0 1.7 1 0 0 1 1 1 0 Haemagluttinin repeat SBP_bac_11 PF13531.6 gi|302348998|ref|YP_003816636.1| - 0.041 13.6 0.0 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein LptF_LptG PF03739.14 gi|302348998|ref|YP_003816636.1| - 0.072 11.9 0.1 0.11 11.3 0.1 1.2 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG OpuAC PF04069.12 gi|302348998|ref|YP_003816636.1| - 0.075 12.6 0.0 2.2 7.8 0.0 2.2 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system RnlA_toxin PF15935.5 gi|302348998|ref|YP_003816636.1| - 0.16 11.8 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 RNase LS, bacterial toxin HEM4 PF02602.15 gi|302348999|ref|YP_003816637.1| - 6.2e-25 87.9 0.0 8.9e-25 87.4 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD CobS_N PF12556.8 gi|302348999|ref|YP_003816637.1| - 0.038 13.7 0.1 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 Cobaltochelatase CobS subunit N terminal TP_methylase PF00590.20 gi|302349000|ref|YP_003816638.1| - 3.5e-44 151.3 0.1 4e-44 151.1 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Porphobil_deam PF01379.20 gi|302349001|ref|YP_003816639.1| - 2.5e-59 200.2 0.0 3.3e-59 199.8 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|302349001|ref|YP_003816639.1| - 3.5e-10 40.1 0.2 6.6e-10 39.2 0.2 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.21 gi|302349002|ref|YP_003816640.1| - 3.9e-66 223.4 0.0 4.8e-66 223.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|302349002|ref|YP_003816640.1| - 7.1e-05 22.1 0.0 0.0001 21.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II NIR_SIR_ferr PF03460.17 gi|302349002|ref|YP_003816640.1| - 0.084 12.7 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain BPS1 PF05633.11 gi|302349003|ref|YP_003816641.1| - 0.0083 15.2 0.1 0.0083 15.2 0.1 1.0 1 0 0 1 1 1 1 Protein BYPASS1-related HD PF01966.22 gi|302349004|ref|YP_003816642.1| - 1.5e-10 41.4 1.2 4.5e-10 39.8 0.3 2.4 3 0 0 3 3 3 1 HD domain HDOD PF08668.12 gi|302349004|ref|YP_003816642.1| - 0.0052 16.3 0.0 0.015 14.8 0.0 1.8 1 0 0 1 1 1 1 HDOD domain bact-PGI_C PF10432.9 gi|302349005|ref|YP_003816643.1| - 1.6e-35 122.4 0.0 3e-35 121.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|302349005|ref|YP_003816643.1| - 8.2e-09 35.4 0.0 1.9e-08 34.2 0.0 1.7 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|302349005|ref|YP_003816643.1| - 0.00019 21.5 0.0 0.00049 20.1 0.0 1.9 1 0 0 1 1 1 1 SIS domain Spc7 PF08317.11 gi|302349006|ref|YP_003816644.1| - 8.9e-05 21.5 44.0 0.00014 20.9 11.9 3.0 1 1 2 3 3 3 2 Spc7 kinetochore protein GAS PF13851.6 gi|302349006|ref|YP_003816644.1| - 0.00022 20.6 42.9 0.0038 16.6 18.2 2.7 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding Baculo_PEP_C PF04513.12 gi|302349006|ref|YP_003816644.1| - 0.0003 20.8 17.6 0.00096 19.2 4.2 2.8 1 1 2 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus TMF_DNA_bd PF12329.8 gi|302349006|ref|YP_003816644.1| - 0.00031 20.7 7.4 0.00031 20.7 7.4 5.3 2 1 2 5 5 5 1 TATA element modulatory factor 1 DNA binding ATG16 PF08614.11 gi|302349006|ref|YP_003816644.1| - 0.00059 20.1 2.8 0.00059 20.1 2.8 3.9 1 1 2 4 4 4 2 Autophagy protein 16 (ATG16) Shugoshin_N PF07558.11 gi|302349006|ref|YP_003816644.1| - 0.00097 19.0 12.4 0.7 9.8 1.2 4.2 2 1 1 3 3 3 2 Shugoshin N-terminal coiled-coil region FlaC_arch PF05377.11 gi|302349006|ref|YP_003816644.1| - 0.0017 18.7 0.7 0.0017 18.7 0.7 6.1 2 2 5 8 8 5 2 Flagella accessory protein C (FlaC) Jnk-SapK_ap_N PF09744.9 gi|302349006|ref|YP_003816644.1| - 0.0018 18.5 15.2 0.0018 18.5 15.2 3.8 1 1 3 4 4 4 1 JNK_SAPK-associated protein-1 FliJ PF02050.16 gi|302349006|ref|YP_003816644.1| - 0.0022 18.2 9.8 0.0022 18.2 9.8 3.4 1 1 2 3 3 2 1 Flagellar FliJ protein MCPsignal PF00015.21 gi|302349006|ref|YP_003816644.1| - 0.0035 17.2 7.9 0.065 13.0 2.7 2.3 2 0 0 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.9 gi|302349006|ref|YP_003816644.1| - 0.0061 16.8 3.4 0.0061 16.8 3.4 4.9 1 1 3 5 5 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 bZIP_1 PF00170.21 gi|302349006|ref|YP_003816644.1| - 0.0071 16.4 0.8 0.0071 16.4 0.8 7.0 2 2 5 7 7 6 2 bZIP transcription factor Seryl_tRNA_N PF02403.22 gi|302349006|ref|YP_003816644.1| - 0.0086 16.3 12.7 0.0086 16.3 12.7 4.9 2 2 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain GldM_N PF12081.8 gi|302349006|ref|YP_003816644.1| - 0.011 15.8 19.5 0.074 13.1 6.8 2.4 2 1 0 2 2 2 0 GldM N-terminal domain XhlA PF10779.9 gi|302349006|ref|YP_003816644.1| - 0.011 15.9 3.8 0.011 15.9 3.8 5.8 4 2 2 6 6 6 0 Haemolysin XhlA Fez1 PF06818.15 gi|302349006|ref|YP_003816644.1| - 0.014 15.9 9.4 0.014 15.9 9.4 2.6 1 1 1 2 2 2 0 Fez1 Laminin_I PF06008.14 gi|302349006|ref|YP_003816644.1| - 0.017 14.8 35.8 0.018 14.8 10.6 2.4 1 1 1 2 2 2 0 Laminin Domain I JIP_LZII PF16471.5 gi|302349006|ref|YP_003816644.1| - 0.022 14.9 2.9 0.022 14.9 2.9 6.0 2 2 4 6 6 6 0 JNK-interacting protein leucine zipper II PspA_IM30 PF04012.12 gi|302349006|ref|YP_003816644.1| - 0.026 14.1 37.4 0.66 9.5 7.5 3.7 1 1 2 3 3 3 0 PspA/IM30 family DUF4988 PF16378.5 gi|302349006|ref|YP_003816644.1| - 0.028 14.1 0.6 0.028 14.1 0.6 3.8 3 1 1 4 4 4 0 Domain of unknown function AAA_13 PF13166.6 gi|302349006|ref|YP_003816644.1| - 0.029 13.0 27.0 0.012 14.4 24.7 1.6 1 1 0 1 1 1 0 AAA domain DUF948 PF06103.11 gi|302349006|ref|YP_003816644.1| - 0.051 13.8 14.7 0.17 12.1 3.2 4.2 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) MbeD_MobD PF04899.12 gi|302349006|ref|YP_003816644.1| - 0.083 13.0 0.0 0.083 13.0 0.0 3.4 2 1 1 3 3 3 0 MbeD/MobD like HOOK PF05622.12 gi|302349006|ref|YP_003816644.1| - 0.085 11.0 43.3 0.58 8.2 22.0 2.1 1 1 1 2 2 2 0 HOOK protein HsbA PF12296.8 gi|302349006|ref|YP_003816644.1| - 0.092 13.2 9.4 1.5 9.3 0.4 3.4 4 1 1 5 5 3 0 Hydrophobic surface binding protein A SlyX PF04102.12 gi|302349006|ref|YP_003816644.1| - 0.094 13.3 0.3 0.094 13.3 0.3 6.1 1 1 4 5 5 3 0 SlyX DUF3584 PF12128.8 gi|302349006|ref|YP_003816644.1| - 0.097 10.2 29.8 0.011 13.3 14.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) COG5 PF10392.9 gi|302349006|ref|YP_003816644.1| - 0.11 12.7 20.1 0.91 9.7 0.3 3.9 1 1 2 3 3 3 0 Golgi transport complex subunit 5 APG6_N PF17675.1 gi|302349006|ref|YP_003816644.1| - 0.17 12.4 47.4 0.083 13.4 11.8 3.8 1 1 3 4 4 4 0 Apg6 coiled-coil region DUF4407 PF14362.6 gi|302349006|ref|YP_003816644.1| - 0.17 11.2 25.1 0.073 12.4 10.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) NPV_P10 PF05531.12 gi|302349006|ref|YP_003816644.1| - 0.2 12.1 20.5 0.083 13.4 4.7 4.2 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein WXG100 PF06013.12 gi|302349006|ref|YP_003816644.1| - 0.31 11.3 7.2 0.71 10.1 0.1 3.9 2 2 3 5 5 4 0 Proteins of 100 residues with WXG FliD_N PF02465.18 gi|302349006|ref|YP_003816644.1| - 0.35 11.6 22.9 0.35 11.6 3.2 4.4 2 2 3 5 5 4 0 Flagellar hook-associated protein 2 N-terminus LPP PF04728.13 gi|302349006|ref|YP_003816644.1| - 0.36 11.2 19.1 0.68 10.4 1.8 5.1 2 2 1 4 4 4 0 Lipoprotein leucine-zipper HMMR_N PF15905.5 gi|302349006|ref|YP_003816644.1| - 0.4 10.1 41.9 0.039 13.4 17.2 2.2 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DUF4763 PF15960.5 gi|302349006|ref|YP_003816644.1| - 0.41 9.9 32.5 0.024 14.0 12.3 3.4 1 1 1 2 2 1 0 Domain of unknown function (DUF4763) EzrA PF06160.12 gi|302349006|ref|YP_003816644.1| - 0.66 8.1 36.9 0.1 10.8 19.8 2.4 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA DUF2203 PF09969.9 gi|302349006|ref|YP_003816644.1| - 0.69 10.7 24.6 0.88 10.3 7.0 4.0 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) CENP-H PF05837.12 gi|302349006|ref|YP_003816644.1| - 0.75 10.2 39.4 1.6 9.2 11.5 4.5 1 1 3 4 4 4 0 Centromere protein H (CENP-H) CENP-F_leu_zip PF10473.9 gi|302349006|ref|YP_003816644.1| - 0.78 9.8 49.1 0.15 12.1 15.7 4.1 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 gi|302349006|ref|YP_003816644.1| - 0.88 9.6 27.4 0.12 12.4 1.6 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) DUF5082 PF16888.5 gi|302349006|ref|YP_003816644.1| - 1 9.6 35.5 0.71 10.2 0.2 5.3 1 1 2 4 4 4 0 Domain of unknown function (DUF5082) 5_nucleotid PF05761.14 gi|302349006|ref|YP_003816644.1| - 1.1 8.1 18.0 0.014 14.3 1.7 2.7 1 1 2 3 3 3 0 5' nucleotidase family Mod_r PF07200.13 gi|302349006|ref|YP_003816644.1| - 1.1 9.3 36.0 18 5.4 15.9 3.5 1 1 1 2 2 1 0 Modifier of rudimentary (Mod(r)) protein DUF4201 PF13870.6 gi|302349006|ref|YP_003816644.1| - 1.2 8.8 45.6 7.1 6.3 20.3 4.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) YabA PF06156.13 gi|302349006|ref|YP_003816644.1| - 1.3 9.7 35.5 4.6 7.9 7.4 4.6 1 1 3 4 4 4 0 Initiation control protein YabA Laminin_II PF06009.12 gi|302349006|ref|YP_003816644.1| - 1.3 9.0 33.2 0.039 14.0 6.4 4.1 1 1 3 4 4 4 0 Laminin Domain II Atg14 PF10186.9 gi|302349006|ref|YP_003816644.1| - 1.6 7.8 39.0 0.026 13.6 17.1 2.6 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 HIP1_clath_bdg PF16515.5 gi|302349006|ref|YP_003816644.1| - 1.6 9.4 38.2 2 9.1 2.5 4.5 1 1 3 4 4 4 0 Clathrin-binding domain of Huntingtin-interacting protein 1 IFT57 PF10498.9 gi|302349006|ref|YP_003816644.1| - 1.8 7.5 26.8 0.075 12.0 10.8 2.3 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DUF2935 PF11155.8 gi|302349006|ref|YP_003816644.1| - 3.6 7.9 11.5 2.3 8.5 2.8 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Prominin PF05478.11 gi|302349006|ref|YP_003816644.1| - 3.7 5.4 18.3 3.2 5.6 16.6 1.6 1 1 0 1 1 1 0 Prominin Corona_S2 PF01601.16 gi|302349006|ref|YP_003816644.1| - 3.8 5.9 5.4 0.37 9.2 0.3 1.7 2 0 0 2 2 2 0 Coronavirus S2 glycoprotein Bacillus_HBL PF05791.11 gi|302349006|ref|YP_003816644.1| - 3.9 7.3 24.4 0.24 11.2 6.2 3.6 1 1 3 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) Filament PF00038.21 gi|302349006|ref|YP_003816644.1| - 4 6.9 40.2 0.066 12.8 5.5 3.5 1 1 2 3 3 3 0 Intermediate filament protein FUSC PF04632.12 gi|302349006|ref|YP_003816644.1| - 4 5.8 8.7 2.1 6.8 0.5 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family Tektin PF03148.14 gi|302349006|ref|YP_003816644.1| - 4.5 5.9 40.9 3.9 6.1 11.7 4.0 1 1 2 3 3 3 0 Tektin family Exonuc_VII_L PF02601.15 gi|302349006|ref|YP_003816644.1| - 4.6 6.7 30.9 0.37 10.3 11.6 2.1 1 1 1 2 2 2 0 Exonuclease VII, large subunit Imm7 PF15585.6 gi|302349006|ref|YP_003816644.1| - 5 7.4 8.3 7.1 6.9 0.8 3.5 1 1 0 3 3 3 0 Immunity protein 7 DUF812 PF05667.11 gi|302349006|ref|YP_003816644.1| - 5 5.9 43.7 0.72 8.7 22.7 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF812) YgbB PF02542.16 gi|302349006|ref|YP_003816644.1| - 5.2 7.3 7.1 2.8 8.2 0.7 2.9 2 1 1 3 3 3 0 YgbB family UPF0242 PF06785.11 gi|302349006|ref|YP_003816644.1| - 5.8 7.0 43.8 0.072 13.2 13.7 2.9 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Syntaxin-6_N PF09177.11 gi|302349006|ref|YP_003816644.1| - 6.4 7.4 26.5 7.2 7.2 6.3 3.8 2 2 1 3 3 3 0 Syntaxin 6, N-terminal Hex_IIIa PF02455.16 gi|302349006|ref|YP_003816644.1| - 6.6 5.4 9.5 1.3 7.7 1.7 2.1 2 0 0 2 2 2 0 Hexon-associated protein (IIIa) ADIP PF11559.8 gi|302349006|ref|YP_003816644.1| - 7.7 6.6 36.7 0.29 11.2 10.0 3.6 2 2 1 3 3 3 0 Afadin- and alpha -actinin-Binding TMPIT PF07851.13 gi|302349006|ref|YP_003816644.1| - 8.3 5.5 26.6 1.9 7.6 11.4 3.1 1 1 1 2 2 2 0 TMPIT-like protein RasGAP_C PF03836.15 gi|302349006|ref|YP_003816644.1| - 8.5 6.5 34.0 0.29 11.3 10.7 3.5 1 1 1 2 2 1 0 RasGAP C-terminus DUF3450 PF11932.8 gi|302349006|ref|YP_003816644.1| - 8.6 5.6 33.1 0.92 8.8 11.4 3.4 1 1 1 2 2 1 0 Protein of unknown function (DUF3450) Syntaxin_2 PF14523.6 gi|302349006|ref|YP_003816644.1| - 9 6.7 33.3 0.73 10.2 12.1 3.5 1 1 2 3 3 2 0 Syntaxin-like protein GIT1_C PF12205.8 gi|302349006|ref|YP_003816644.1| - 9.2 6.4 12.1 0.78 9.9 3.2 2.7 1 1 1 2 2 2 0 G protein-coupled receptor kinase-interacting protein 1 C term ATP-grasp_5 PF13549.6 gi|302349008|ref|YP_003816646.1| - 9.6e-71 237.8 0.3 1.8e-70 236.9 0.3 1.5 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|302349008|ref|YP_003816646.1| - 1.3e-47 161.1 0.6 1.1e-46 158.1 0.2 2.3 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|302349008|ref|YP_003816646.1| - 3.3e-27 95.3 0.1 2.4e-25 89.3 0.0 3.3 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|302349008|ref|YP_003816646.1| - 1.2e-06 29.1 0.0 4.8e-06 27.2 0.0 2.1 1 0 0 1 1 1 1 CoA binding domain ATP-grasp PF02222.22 gi|302349008|ref|YP_003816646.1| - 0.11 12.1 0.0 0.31 10.6 0.0 1.8 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|302349008|ref|YP_003816646.1| - 0.14 11.7 0.0 0.62 9.6 0.0 2.0 1 1 0 1 1 1 0 ATP-grasp domain Radical_SAM PF04055.21 gi|302349008|ref|YP_003816646.1| - 0.22 11.9 0.1 2 8.8 0.0 2.6 3 1 0 3 3 3 0 Radical SAM superfamily AAA PF00004.29 gi|302349009|ref|YP_003816647.1| - 1.1e-99 330.0 0.0 3.8e-50 169.7 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|302349009|ref|YP_003816647.1| - 1.8e-33 114.0 0.2 6.2e-16 57.9 0.0 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|302349009|ref|YP_003816647.1| - 1.2e-21 76.7 0.1 7.2e-21 74.2 0.4 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|302349009|ref|YP_003816647.1| - 4.4e-16 59.0 0.0 5.1e-08 32.8 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|302349009|ref|YP_003816647.1| - 2.2e-15 57.2 0.0 2.6e-08 34.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|302349009|ref|YP_003816647.1| - 3.3e-13 50.4 0.1 1e-05 26.0 0.0 3.6 2 1 1 3 3 3 2 AAA ATPase domain TIP49 PF06068.13 gi|302349009|ref|YP_003816647.1| - 1.4e-12 47.5 0.0 2.9e-05 23.5 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|302349009|ref|YP_003816647.1| - 9.7e-12 45.3 0.6 0.0041 17.4 0.0 4.4 3 2 2 5 5 4 2 AAA domain AAA_5 PF07728.14 gi|302349009|ref|YP_003816647.1| - 1.4e-11 44.6 1.1 3.4e-05 23.9 0.1 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|302349009|ref|YP_003816647.1| - 2.6e-11 43.8 0.0 0.00015 22.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|302349009|ref|YP_003816647.1| - 2.7e-11 43.1 0.3 1.6e-10 40.6 0.0 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 Vps4_C PF09336.10 gi|302349009|ref|YP_003816647.1| - 2.2e-09 37.1 0.2 1.2e-05 25.2 0.0 2.7 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|302349009|ref|YP_003816647.1| - 3.3e-09 37.4 0.0 0.00031 21.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|302349009|ref|YP_003816647.1| - 3.3e-09 36.9 0.0 0.00016 21.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|302349009|ref|YP_003816647.1| - 2.1e-08 34.1 0.1 0.0094 15.7 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|302349009|ref|YP_003816647.1| - 3.2e-08 34.0 0.0 0.0049 17.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|302349009|ref|YP_003816647.1| - 9e-08 31.7 1.2 0.0095 15.3 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|302349009|ref|YP_003816647.1| - 3.4e-07 30.6 0.0 0.0065 16.8 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|302349009|ref|YP_003816647.1| - 1.1e-06 28.6 0.1 0.019 14.7 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|302349009|ref|YP_003816647.1| - 1.2e-06 28.3 3.6 0.13 11.8 0.3 4.1 3 2 0 3 3 3 2 AAA domain Bac_DnaA PF00308.18 gi|302349009|ref|YP_003816647.1| - 3.1e-06 27.2 0.0 0.00038 20.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein TsaE PF02367.17 gi|302349009|ref|YP_003816647.1| - 4.2e-06 26.8 0.1 0.078 13.0 0.0 2.8 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|302349009|ref|YP_003816647.1| - 9.5e-06 25.6 1.9 0.5 10.3 0.1 3.5 3 0 0 3 3 3 2 NACHT domain ATPase PF06745.13 gi|302349009|ref|YP_003816647.1| - 1e-05 25.0 1.6 0.29 10.4 0.3 3.8 4 1 0 4 4 3 2 KaiC Sigma54_activat PF00158.26 gi|302349009|ref|YP_003816647.1| - 1.1e-05 25.3 0.1 0.26 11.0 0.0 3.1 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|302349009|ref|YP_003816647.1| - 1.3e-05 24.8 0.0 0.21 11.1 0.0 2.5 2 1 0 2 2 2 2 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|302349009|ref|YP_003816647.1| - 1.3e-05 24.5 0.1 0.12 11.6 0.1 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_3 PF07726.11 gi|302349009|ref|YP_003816647.1| - 1.5e-05 24.9 0.0 0.15 11.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|302349009|ref|YP_003816647.1| - 1.9e-05 24.0 0.0 0.1 11.7 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Parvo_NS1 PF01057.17 gi|302349009|ref|YP_003816647.1| - 2.3e-05 23.6 0.2 0.046 12.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|302349009|ref|YP_003816647.1| - 5.9e-05 23.1 0.1 0.027 14.4 0.0 2.8 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|302349009|ref|YP_003816647.1| - 0.0001 22.8 0.0 0.79 10.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.16 gi|302349009|ref|YP_003816647.1| - 0.00014 21.4 1.4 0.26 10.7 0.1 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_17 PF13207.6 gi|302349009|ref|YP_003816647.1| - 0.00061 20.2 0.0 1.8 9.0 0.0 3.2 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|302349009|ref|YP_003816647.1| - 0.00063 19.7 0.0 5.1 7.0 0.0 3.2 2 1 1 3 3 3 0 Rad17 P-loop domain DUF2075 PF09848.9 gi|302349009|ref|YP_003816647.1| - 0.00088 18.6 0.0 0.12 11.6 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) IPT PF01745.16 gi|302349009|ref|YP_003816647.1| - 0.0013 18.1 0.7 1.2 8.5 0.0 2.7 3 0 0 3 3 3 1 Isopentenyl transferase AAA_30 PF13604.6 gi|302349009|ref|YP_003816647.1| - 0.0016 18.2 0.4 2.2 8.0 0.1 2.7 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|302349009|ref|YP_003816647.1| - 0.0019 18.1 0.0 1.4 8.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|302349009|ref|YP_003816647.1| - 0.0024 18.0 0.0 3.4 7.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AFG1_ATPase PF03969.16 gi|302349009|ref|YP_003816647.1| - 0.003 16.5 0.0 1.3 7.9 0.0 2.7 3 0 0 3 3 3 1 AFG1-like ATPase Molydop_binding PF01568.21 gi|302349009|ref|YP_003816647.1| - 0.0034 17.4 0.3 0.028 14.4 0.3 2.4 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain AAA_6 PF12774.7 gi|302349009|ref|YP_003816647.1| - 0.0045 16.0 0.1 0.19 10.6 0.0 2.4 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region Cytidylate_kin PF02224.18 gi|302349009|ref|YP_003816647.1| - 0.0075 16.0 0.2 3 7.5 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase AAA_19 PF13245.6 gi|302349009|ref|YP_003816647.1| - 0.0083 16.5 3.5 3.6 7.9 0.2 3.0 2 1 1 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|302349009|ref|YP_003816647.1| - 0.011 14.9 0.0 5.2 6.2 0.0 2.6 2 0 0 2 2 2 0 NB-ARC domain TniB PF05621.11 gi|302349009|ref|YP_003816647.1| - 0.022 14.2 0.0 6 6.2 0.0 3.2 4 0 0 4 4 3 0 Bacterial TniB protein PduV-EutP PF10662.9 gi|302349009|ref|YP_003816647.1| - 0.023 14.5 0.0 6.6 6.5 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Guanylate_kin PF00625.21 gi|302349009|ref|YP_003816647.1| - 0.026 14.2 0.1 12 5.5 0.0 3.4 2 1 1 3 3 3 0 Guanylate kinase AAA_29 PF13555.6 gi|302349009|ref|YP_003816647.1| - 0.027 14.2 0.0 5.9 6.7 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|302349009|ref|YP_003816647.1| - 0.029 13.4 0.0 2 7.4 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein SKI PF01202.22 gi|302349009|ref|YP_003816647.1| - 0.034 14.3 0.0 6.6 6.8 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase Viral_helicase1 PF01443.18 gi|302349009|ref|YP_003816647.1| - 0.063 13.0 0.0 2 8.1 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|302349009|ref|YP_003816647.1| - 0.075 13.0 0.0 23 4.9 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.15 gi|302349009|ref|YP_003816647.1| - 0.13 12.2 6.7 20 5.0 0.0 4.6 4 1 0 5 5 4 0 NTPase Cytidylate_kin2 PF13189.6 gi|302349009|ref|YP_003816647.1| - 0.18 12.0 0.0 5.5 7.1 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family CYTH PF01928.21 gi|302349010|ref|YP_003816648.1| - 1.1e-31 110.2 0.0 1.2e-31 110.0 0.0 1.0 1 0 0 1 1 1 1 CYTH domain Ribosomal_S19e PF01090.19 gi|302349011|ref|YP_003816649.1| - 1.3e-55 186.8 0.0 1.5e-55 186.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|302349011|ref|YP_003816649.1| - 0.0097 15.8 0.3 0.066 13.2 0.0 2.4 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|302349011|ref|YP_003816649.1| - 0.052 13.5 0.0 0.087 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|302349011|ref|YP_003816649.1| - 0.063 13.3 0.1 0.23 11.4 0.1 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HemN_C PF06969.16 gi|302349011|ref|YP_003816649.1| - 0.081 13.0 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain Rrf2 PF02082.20 gi|302349011|ref|YP_003816649.1| - 0.099 13.0 0.2 0.25 11.7 0.1 1.7 2 0 0 2 2 2 0 Transcriptional regulator DUF447 PF04289.12 gi|302349012|ref|YP_003816650.1| - 1.6e-10 41.0 0.0 1.9e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) MAF_flag10 PF01973.18 gi|302349013|ref|YP_003816651.1| - 5.1e-06 26.3 0.0 8.9e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF115 MoeA_N PF03453.17 gi|302349014|ref|YP_003816652.1| - 3.9e-43 146.9 0.5 5.7e-43 146.4 0.5 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|302349014|ref|YP_003816652.1| - 1.4e-28 99.3 0.1 2.4e-28 98.6 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|302349014|ref|YP_003816652.1| - 2.9e-17 62.6 0.1 7.9e-17 61.2 0.1 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) RHH_1 PF01402.21 gi|302349015|ref|YP_003816653.1| - 0.00096 19.0 0.4 0.0058 16.5 0.1 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|302349015|ref|YP_003816653.1| - 0.0075 16.4 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|302349015|ref|YP_003816653.1| - 0.019 15.3 0.1 0.041 14.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|302349015|ref|YP_003816653.1| - 0.038 13.9 0.6 0.13 12.2 0.6 2.0 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB CcdA PF07362.12 gi|302349015|ref|YP_003816653.1| - 0.039 14.4 1.0 41 4.7 0.1 3.2 3 0 0 3 3 3 0 Post-segregation antitoxin CcdA VWA PF00092.28 gi|302349016|ref|YP_003816654.1| - 5.1e-14 52.9 0.0 5.7e-14 52.7 0.0 1.0 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|302349016|ref|YP_003816654.1| - 7.3e-12 45.9 0.0 1.6e-11 44.8 0.0 1.5 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|302349016|ref|YP_003816654.1| - 1.1e-05 25.4 0.0 1.6e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF1194 PF06707.11 gi|302349016|ref|YP_003816654.1| - 3.7e-05 23.0 0.0 4.8e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1194) DUF5622 PF18533.1 gi|302349017|ref|YP_003816655.1| - 3.9e-10 39.7 1.2 4.4e-10 39.6 1.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) Ribosomal_L6 PF00347.23 gi|302349018|ref|YP_003816656.1| - 6e-30 103.7 8.7 2.9e-17 63.1 2.7 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF4469 PF14734.6 gi|302349018|ref|YP_003816656.1| - 0.069 13.3 0.3 0.64 10.2 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4469) with IG-like fold Ribosomal_L32e PF01655.18 gi|302349019|ref|YP_003816657.1| - 5.2e-32 110.5 0.0 6.8e-32 110.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 HERV-K_env_2 PF13804.6 gi|302349019|ref|YP_003816657.1| - 0.042 13.6 0.0 0.052 13.3 0.0 1.1 1 0 0 1 1 1 0 Retro-transcribing viruses envelope glycoprotein Ribosomal_L19e PF01280.20 gi|302349020|ref|YP_003816658.1| - 4.9e-45 153.1 1.5 5.5e-45 153.0 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e RVT_thumb PF06817.14 gi|302349020|ref|YP_003816658.1| - 0.13 12.2 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Reverse transcriptase thumb domain Ribosomal_L5e PF17144.4 gi|302349021|ref|YP_003816659.1| - 1.8e-34 119.1 1.2 3.3e-22 79.2 0.2 2.4 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|302349021|ref|YP_003816659.1| - 5.7e-08 33.1 0.0 8.2e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L18_c PF14204.6 gi|302349021|ref|YP_003816659.1| - 1.3e-06 29.3 0.0 2.2e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region AAA_22 PF13401.6 gi|302349021|ref|YP_003816659.1| - 0.096 13.0 0.0 0.15 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain Ribosomal_S5 PF00333.20 gi|302349022|ref|YP_003816660.1| - 3e-25 88.0 1.1 3e-25 88.0 1.1 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|302349022|ref|YP_003816660.1| - 2.5e-23 81.3 0.0 4e-23 80.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|302349023|ref|YP_003816661.1| - 1.6e-11 43.9 0.0 3.9e-11 42.7 0.0 1.7 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|302349024|ref|YP_003816662.1| - 1.1e-19 71.4 1.2 1.6e-19 70.9 1.2 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AAA_24 PF13479.6 gi|302349025|ref|YP_003816663.1| - 1.7e-05 24.6 0.0 2.5e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|302349025|ref|YP_003816663.1| - 6.9e-05 23.4 0.0 0.00011 22.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|302349025|ref|YP_003816663.1| - 0.00054 20.4 0.0 0.00072 20.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|302349025|ref|YP_003816663.1| - 0.0011 19.3 0.0 0.0017 18.8 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|302349025|ref|YP_003816663.1| - 0.0014 18.1 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein AAA_25 PF13481.6 gi|302349025|ref|YP_003816663.1| - 0.0021 17.7 0.0 0.004 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|302349025|ref|YP_003816663.1| - 0.0033 17.2 0.0 0.0056 16.4 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|302349025|ref|YP_003816663.1| - 0.01 15.8 0.0 0.021 14.7 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|302349025|ref|YP_003816663.1| - 0.012 15.9 0.0 0.014 15.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|302349025|ref|YP_003816663.1| - 0.013 15.2 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|302349025|ref|YP_003816663.1| - 0.033 14.0 0.0 0.04 13.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|302349025|ref|YP_003816663.1| - 0.034 14.5 0.0 0.054 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Glyco_transf_4 PF13439.6 gi|302349025|ref|YP_003816663.1| - 0.037 14.0 0.0 0.077 13.0 0.0 1.7 2 0 0 2 2 2 0 Glycosyltransferase Family 4 TIP49 PF06068.13 gi|302349025|ref|YP_003816663.1| - 0.041 13.1 0.0 0.058 12.6 0.0 1.1 1 0 0 1 1 1 0 TIP49 P-loop domain YjeF_N PF03853.15 gi|302349025|ref|YP_003816663.1| - 0.061 13.2 0.0 0.091 12.6 0.0 1.2 1 0 0 1 1 1 0 YjeF-related protein N-terminus TsaE PF02367.17 gi|302349025|ref|YP_003816663.1| - 0.081 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|302349025|ref|YP_003816663.1| - 0.081 12.9 0.0 0.12 12.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ResIII PF04851.15 gi|302349025|ref|YP_003816663.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit ATP_bind_1 PF03029.17 gi|302349025|ref|YP_003816663.1| - 0.19 11.5 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein CarS-like PF01864.17 gi|302349026|ref|YP_003816664.1| - 1.4e-38 132.6 3.3 1.1e-37 129.6 3.3 1.9 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|302349026|ref|YP_003816664.1| - 2.2e-06 27.7 0.4 2.2e-06 27.7 0.4 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family FBPase_3 PF01950.16 gi|302349027|ref|YP_003816665.1| - 1e-182 607.2 0.0 1.2e-182 607.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase ThiG PF05690.14 gi|302349028|ref|YP_003816666.1| - 1.4e-07 31.1 0.7 2.8e-07 30.1 0.7 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG TIM PF00121.18 gi|302349028|ref|YP_003816666.1| - 4.2e-07 29.6 0.1 5.2e-06 26.0 0.0 2.0 1 1 1 2 2 2 1 Triosephosphate isomerase Trp_syntA PF00290.20 gi|302349028|ref|YP_003816666.1| - 2.9e-05 23.1 0.4 8.6e-05 21.5 0.3 1.8 2 0 0 2 2 2 1 Tryptophan synthase alpha chain NMO PF03060.15 gi|302349028|ref|YP_003816666.1| - 3.8e-05 23.2 2.1 5.6e-05 22.7 1.1 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|302349028|ref|YP_003816666.1| - 0.00062 19.3 0.3 0.0021 17.6 0.2 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|302349028|ref|YP_003816666.1| - 0.00076 18.6 1.1 0.0015 17.7 1.1 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|302349028|ref|YP_003816666.1| - 0.0023 17.0 1.0 0.0039 16.2 1.0 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain IGPS PF00218.21 gi|302349028|ref|YP_003816666.1| - 0.0031 16.7 0.0 0.0056 15.9 0.0 1.4 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DUF561 PF04481.12 gi|302349028|ref|YP_003816666.1| - 0.021 14.0 0.1 0.037 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) G3P_antiterm PF04309.12 gi|302349028|ref|YP_003816666.1| - 0.025 14.0 0.5 0.065 12.6 0.3 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator HTH_11 PF08279.12 gi|302349029|ref|YP_003816667.1| - 2.6e-05 24.1 0.2 5.8e-05 23.0 0.2 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|302349029|ref|YP_003816667.1| - 3.7e-05 23.5 0.6 9.4e-05 22.2 0.2 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|302349029|ref|YP_003816667.1| - 8.4e-05 22.4 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|302349029|ref|YP_003816667.1| - 9e-05 22.0 0.3 0.0002 20.9 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|302349029|ref|YP_003816667.1| - 0.00092 19.0 1.2 0.0012 18.7 1.2 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit FtsK_gamma PF09397.10 gi|302349029|ref|YP_003816667.1| - 0.0014 18.4 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 Ftsk gamma domain HTH_5 PF01022.20 gi|302349029|ref|YP_003816667.1| - 0.0028 17.5 0.0 0.0055 16.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_32 PF13565.6 gi|302349029|ref|YP_003816667.1| - 0.0057 17.3 0.1 3.5 8.3 0.0 2.1 2 0 0 2 2 2 2 Homeodomain-like domain Mga PF05043.13 gi|302349029|ref|YP_003816667.1| - 0.0079 16.8 0.1 0.031 14.9 0.0 1.9 1 1 1 2 2 2 1 Mga helix-turn-helix domain HTH_7 PF02796.15 gi|302349029|ref|YP_003816667.1| - 0.0081 16.2 0.3 1.9 8.7 0.0 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|302349029|ref|YP_003816667.1| - 0.012 15.6 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.20 gi|302349029|ref|YP_003816667.1| - 0.013 15.8 0.1 0.025 14.9 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 gi|302349029|ref|YP_003816667.1| - 0.018 14.8 0.5 0.036 13.8 0.1 1.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|302349029|ref|YP_003816667.1| - 0.019 14.4 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF2089 PF09862.9 gi|302349029|ref|YP_003816667.1| - 0.025 14.6 0.1 0.11 12.5 0.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_23 PF13384.6 gi|302349029|ref|YP_003816667.1| - 0.039 13.8 0.0 0.087 12.7 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain DUF2551 PF10826.8 gi|302349029|ref|YP_003816667.1| - 0.039 14.2 0.1 0.073 13.3 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2551) HTH_9 PF08221.11 gi|302349029|ref|YP_003816667.1| - 0.042 14.0 0.4 0.09 12.9 0.1 1.7 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Peptidase_U32 PF01136.19 gi|302349029|ref|YP_003816667.1| - 0.056 12.6 0.0 0.061 12.5 0.0 1.1 1 0 0 1 1 1 0 Peptidase family U32 MarR PF01047.22 gi|302349029|ref|YP_003816667.1| - 0.085 12.8 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|302349029|ref|YP_003816667.1| - 0.088 12.5 0.1 0.19 11.4 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_6 PF01418.17 gi|302349029|ref|YP_003816667.1| - 0.097 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Acyl-CoA_dh_1 PF00441.24 gi|302349030|ref|YP_003816668.1| - 2.2e-33 115.6 1.9 3.6e-33 114.9 1.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|302349030|ref|YP_003816668.1| - 4.4e-13 49.2 0.0 7.1e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|302349030|ref|YP_003816668.1| - 4.2e-10 40.0 0.2 7.2e-10 39.3 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Ribosomal_L16 PF00252.18 gi|302349031|ref|YP_003816669.1| - 1.1e-33 116.0 0.0 1.3e-33 115.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF5081 PF16887.5 gi|302349032|ref|YP_003816670.1| - 0.078 12.0 0.0 0.083 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5081) SHMT PF00464.19 gi|302349033|ref|YP_003816671.1| - 2.5e-68 230.5 0.2 3.2e-68 230.2 0.2 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|302349033|ref|YP_003816671.1| - 4.9e-10 39.2 0.1 1.3e-09 37.8 0.1 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|302349033|ref|YP_003816671.1| - 4.2e-08 32.7 0.0 1.6e-07 30.8 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|302349033|ref|YP_003816671.1| - 0.00034 19.7 0.1 0.00063 18.8 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 gi|302349033|ref|YP_003816671.1| - 0.007 15.4 0.1 0.062 12.3 0.1 2.0 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Egg_lysin PF01303.17 gi|302349033|ref|YP_003816671.1| - 0.017 15.3 0.0 0.038 14.2 0.0 1.5 1 0 0 1 1 1 0 Egg lysin (Sperm-lysin) Cys_Met_Meta_PP PF01053.20 gi|302349033|ref|YP_003816671.1| - 0.039 12.5 0.1 0.07 11.6 0.1 1.5 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme ABC_tran PF00005.27 gi|302349034|ref|YP_003816672.1| - 4.4e-26 92.0 0.0 6.3e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|302349034|ref|YP_003816672.1| - 2.8e-18 66.2 0.0 4.5e-18 65.5 0.0 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|302349034|ref|YP_003816672.1| - 6.8e-09 36.0 2.1 3.6e-08 33.6 0.1 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|302349034|ref|YP_003816672.1| - 2.8e-05 23.7 0.2 0.00094 18.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|302349034|ref|YP_003816672.1| - 0.00055 19.6 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain TniB PF05621.11 gi|302349034|ref|YP_003816672.1| - 0.014 14.9 1.9 0.017 14.5 0.2 2.0 2 1 0 2 2 2 0 Bacterial TniB protein PRK PF00485.18 gi|302349034|ref|YP_003816672.1| - 0.015 15.1 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|302349034|ref|YP_003816672.1| - 0.033 14.6 0.0 0.05 14.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|302349034|ref|YP_003816672.1| - 0.042 13.4 0.0 0.19 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 gi|302349034|ref|YP_003816672.1| - 0.061 12.6 0.0 0.49 9.7 0.0 2.0 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain NB-ARC PF00931.22 gi|302349034|ref|YP_003816672.1| - 0.096 11.9 0.1 0.23 10.6 0.1 1.6 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|302349034|ref|YP_003816672.1| - 0.098 12.6 0.1 0.2 11.6 0.1 1.5 1 0 0 1 1 1 0 NACHT domain CbiA PF01656.23 gi|302349034|ref|YP_003816672.1| - 0.17 12.0 0.2 0.55 10.3 0.1 1.8 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|302349035|ref|YP_003816673.1| - 6e-28 98.1 0.0 9e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|302349035|ref|YP_003816673.1| - 9.9e-20 70.8 0.1 1.6e-19 70.1 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|302349035|ref|YP_003816673.1| - 0.0013 19.0 0.0 0.0023 18.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|302349035|ref|YP_003816673.1| - 0.016 14.9 0.3 0.035 13.8 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|302349035|ref|YP_003816673.1| - 0.15 12.5 0.4 0.22 11.9 0.4 1.4 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|302349035|ref|YP_003816673.1| - 0.17 11.6 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein CdvA PF18822.1 gi|302349037|ref|YP_003816675.1| - 2.5e-33 114.5 6.2 4e-33 113.9 6.2 1.3 1 0 0 1 1 1 1 CdvA-like coiled-coil domain PRC PF05239.16 gi|302349037|ref|YP_003816675.1| - 7e-05 22.8 2.6 7e-05 22.8 2.6 1.7 2 0 0 2 2 2 1 PRC-barrel domain TEX13 PF15186.6 gi|302349037|ref|YP_003816675.1| - 0.08 12.6 0.6 0.16 11.7 0.5 1.5 1 1 0 1 1 1 0 Testis-expressed sequence 13 protein family Prp18 PF02840.15 gi|302349037|ref|YP_003816675.1| - 0.14 12.2 1.4 0.35 10.9 0.2 1.8 1 1 0 2 2 2 0 Prp18 domain YlqD PF11068.8 gi|302349037|ref|YP_003816675.1| - 0.53 10.7 5.6 7.3 7.0 2.8 2.5 1 1 1 2 2 2 0 YlqD protein betaPIX_CC PF16523.5 gi|302349037|ref|YP_003816675.1| - 0.73 9.7 10.8 0.35 10.7 0.9 2.9 2 1 1 3 3 3 0 betaPIX coiled coil Snf7 PF03357.21 gi|302349038|ref|YP_003816676.1| - 4.9e-06 26.3 1.0 6.3e-06 25.9 1.0 1.1 1 0 0 1 1 1 1 Snf7 Radial_spoke_3 PF06098.11 gi|302349038|ref|YP_003816676.1| - 0.0065 15.8 0.4 0.0089 15.3 0.4 1.2 1 0 0 1 1 1 1 Radial spoke protein 3 TetR_C_1 PF02909.17 gi|302349038|ref|YP_003816676.1| - 0.048 13.5 0.3 0.092 12.6 0.3 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Dynein_C PF18199.1 gi|302349038|ref|YP_003816676.1| - 0.088 12.0 0.1 0.21 10.7 0.0 1.7 2 0 0 2 2 2 0 Dynein heavy chain C-terminal domain Baculo_PEP_C PF04513.12 gi|302349038|ref|YP_003816676.1| - 0.15 12.1 0.3 5 7.2 0.0 2.3 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus TrmB PF01978.19 gi|302349039|ref|YP_003816677.1| - 2e-13 50.0 0.1 4.3e-13 49.0 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.20 gi|302349039|ref|YP_003816677.1| - 0.057 13.5 0.2 0.19 11.8 0.0 2.0 2 0 0 2 2 2 0 E2F/DP family winged-helix DNA-binding domain Topoisom_bac PF01131.20 gi|302349040|ref|YP_003816678.1| - 2.6e-74 250.7 0.0 4.1e-74 250.0 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|302349040|ref|YP_003816678.1| - 9.4e-23 80.4 0.1 3.1e-22 78.8 0.0 2.0 2 0 0 2 2 1 1 Toprim domain DEAD PF00270.29 gi|302349040|ref|YP_003816678.1| - 6.8e-14 52.0 0.0 8.6e-13 48.4 0.0 2.7 4 0 0 4 4 3 1 DEAD/DEAH box helicase zf_Rg PF17915.1 gi|302349040|ref|YP_003816678.1| - 2.4e-10 39.6 3.4 2.4e-10 39.6 3.4 1.8 2 0 0 2 2 1 1 Reverse gyrase zinc finger ResIII PF04851.15 gi|302349040|ref|YP_003816678.1| - 1.3e-07 31.8 0.0 2.8e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|302349040|ref|YP_003816678.1| - 2.1e-06 28.1 0.1 0.047 14.0 0.0 3.9 3 1 0 3 3 3 2 Helicase conserved C-terminal domain AAA_30 PF13604.6 gi|302349040|ref|YP_003816678.1| - 3.6e-05 23.6 0.0 0.00012 21.8 0.0 2.0 2 0 0 2 2 1 1 AAA domain Toprim_4 PF13662.6 gi|302349040|ref|YP_003816678.1| - 0.00034 21.0 0.0 0.014 15.8 0.0 2.9 2 0 0 2 2 2 1 Toprim domain PhoH PF02562.16 gi|302349040|ref|YP_003816678.1| - 0.0017 17.8 0.1 0.0087 15.5 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein zinc_ribbon_2 PF13240.6 gi|302349040|ref|YP_003816678.1| - 0.0054 16.4 6.3 0.92 9.3 2.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain IstB_IS21 PF01695.17 gi|302349040|ref|YP_003816678.1| - 0.011 15.5 0.0 0.034 13.9 0.0 1.8 1 0 0 1 1 1 0 IstB-like ATP binding protein HypA PF01155.19 gi|302349040|ref|YP_003816678.1| - 0.011 15.7 1.8 0.082 12.9 0.1 2.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Terminase_GpA PF05876.12 gi|302349040|ref|YP_003816678.1| - 0.014 13.9 0.0 0.028 13.0 0.0 1.4 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) AAA_25 PF13481.6 gi|302349040|ref|YP_003816678.1| - 0.04 13.5 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|302349040|ref|YP_003816678.1| - 0.06 13.6 1.0 0.29 11.4 0.2 2.6 2 1 0 2 2 1 0 AAA domain Sgf11 PF08209.11 gi|302349040|ref|YP_003816678.1| - 0.13 11.9 0.1 0.39 10.3 0.1 1.9 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) NRDD PF13597.6 gi|302349040|ref|YP_003816678.1| - 0.13 11.0 0.5 0.24 10.1 0.5 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase AAA_19 PF13245.6 gi|302349040|ref|YP_003816678.1| - 0.16 12.3 0.0 0.64 10.4 0.0 2.1 1 0 0 1 1 1 0 AAA domain zinc_ribbon_15 PF17032.5 gi|302349040|ref|YP_003816678.1| - 0.22 12.3 0.1 0.22 12.3 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon family RecR PF02132.15 gi|302349040|ref|YP_003816678.1| - 0.28 10.8 4.3 0.14 11.8 0.1 2.5 2 0 0 2 2 2 0 RecR protein DZR PF12773.7 gi|302349040|ref|YP_003816678.1| - 0.31 11.1 7.7 0.14 12.2 0.7 2.2 2 0 0 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|302349040|ref|YP_003816678.1| - 0.5 10.3 3.8 2 8.4 0.1 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|302349040|ref|YP_003816678.1| - 1.3 8.9 5.4 0.87 9.5 1.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|302349040|ref|YP_003816678.1| - 2.4 8.4 7.8 0.27 11.4 0.6 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|302349040|ref|YP_003816678.1| - 2.6 7.6 5.3 19 4.8 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Pantoate_transf PF02548.15 gi|302349041|ref|YP_003816679.1| - 5.2e-107 357.1 0.6 5.9e-107 356.9 0.6 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|302349041|ref|YP_003816679.1| - 1.8e-11 43.9 3.3 2.6e-09 36.9 3.4 2.6 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ComA PF02679.15 gi|302349041|ref|YP_003816679.1| - 0.00085 18.9 0.4 0.25 10.8 0.2 2.2 1 1 1 2 2 2 2 (2R)-phospho-3-sulfolactate synthase (ComA) ALAD PF00490.21 gi|302349041|ref|YP_003816679.1| - 0.0043 16.3 1.9 0.005 16.0 0.6 1.7 2 1 0 2 2 2 1 Delta-aminolevulinic acid dehydratase Trp_ring PF18669.1 gi|302349041|ref|YP_003816679.1| - 0.15 12.3 1.8 0.68 10.2 0.4 2.6 2 0 0 2 2 2 0 Trimeric autotransporter adhesin Trp ring domain ApbA_C PF08546.11 gi|302349042|ref|YP_003816680.1| - 3.8e-22 78.8 0.4 5.2e-22 78.4 0.4 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|302349042|ref|YP_003816680.1| - 1.1e-11 44.6 0.0 1.9e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.6 gi|302349042|ref|YP_003816680.1| - 0.00064 19.9 0.5 0.0014 18.8 0.5 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|302349042|ref|YP_003816680.1| - 0.051 12.3 2.9 0.078 11.7 2.9 1.2 1 0 0 1 1 1 0 HI0933-like protein F420_oxidored PF03807.17 gi|302349042|ref|YP_003816680.1| - 0.12 12.9 1.7 0.27 11.8 0.7 2.2 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|302349042|ref|YP_003816680.1| - 0.13 11.4 1.3 0.26 10.5 1.3 1.5 1 0 0 1 1 1 0 FAD binding domain GIDA PF01134.22 gi|302349042|ref|YP_003816680.1| - 0.87 8.6 2.5 1.2 8.1 2.5 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Alba PF01918.21 gi|302349043|ref|YP_003816681.1| - 6.2e-07 29.2 0.0 7.9e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Alba eIF-5a PF01287.20 gi|302349044|ref|YP_003816682.1| - 4.3e-07 29.9 0.1 7.6e-07 29.1 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|302349044|ref|YP_003816682.1| - 5e-07 29.7 0.1 1.1e-06 28.5 0.1 1.6 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|302349044|ref|YP_003816682.1| - 0.0035 17.3 0.0 0.0058 16.6 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain TFIIB PF00382.19 gi|302349045|ref|YP_003816683.1| - 3.1e-36 123.2 0.8 7.6e-20 70.7 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat HTH_AsnC-type PF13404.6 gi|302349045|ref|YP_003816683.1| - 0.00088 19.1 0.1 0.0024 17.7 0.1 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain UPF0253 PF06786.12 gi|302349045|ref|YP_003816683.1| - 0.0016 18.7 0.0 0.0041 17.4 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0253) Sigma70_r4 PF04545.16 gi|302349045|ref|YP_003816683.1| - 0.0032 17.0 0.0 0.021 14.3 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 TF_Zn_Ribbon PF08271.12 gi|302349045|ref|YP_003816683.1| - 0.0046 16.5 0.0 0.0077 15.7 0.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|302349045|ref|YP_003816683.1| - 0.0062 16.6 0.0 0.34 11.0 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain Sigma70_r4_2 PF08281.12 gi|302349045|ref|YP_003816683.1| - 0.012 15.3 0.1 0.18 11.5 0.0 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|302349045|ref|YP_003816683.1| - 0.081 12.9 0.0 0.66 10.0 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MMR_HSR1 PF01926.23 gi|302349046|ref|YP_003816684.1| - 2.4e-13 50.2 0.0 5.7e-11 42.5 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|302349046|ref|YP_003816684.1| - 8.1e-11 42.1 0.0 1.2e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|302349046|ref|YP_003816684.1| - 4.8e-06 26.2 0.0 5.4e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|302349046|ref|YP_003816684.1| - 4.1e-05 23.7 0.5 0.052 13.6 0.1 3.1 2 1 1 3 3 3 1 Dynamin family GTP_EFTU PF00009.27 gi|302349046|ref|YP_003816684.1| - 0.00081 19.0 0.1 0.023 14.2 0.0 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|302349046|ref|YP_003816684.1| - 0.0062 16.1 0.0 0.072 12.7 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AFOR_C PF01314.18 gi|302349047|ref|YP_003816685.1| - 1.7e-106 356.5 0.0 2.2e-106 356.1 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|302349047|ref|YP_003816685.1| - 5.7e-72 241.8 0.1 8.7e-72 241.2 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF2153 PF09921.9 gi|302349048|ref|YP_003816686.1| - 3.9e-44 149.4 1.2 4.6e-44 149.2 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) DUF1804 PF08822.11 gi|302349048|ref|YP_003816686.1| - 0.028 14.4 0.1 0.036 14.0 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1804) Ribosomal_S25 PF03297.15 gi|302349049|ref|YP_003816687.1| - 3.2e-09 36.9 0.4 3.7e-09 36.7 0.4 1.1 1 0 0 1 1 1 1 S25 ribosomal protein Fe_dep_repress PF01325.19 gi|302349049|ref|YP_003816687.1| - 0.0014 18.8 0.1 0.0028 17.8 0.1 1.5 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|302349049|ref|YP_003816687.1| - 0.0069 16.2 0.1 0.011 15.6 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|302349049|ref|YP_003816687.1| - 0.018 15.0 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|302349049|ref|YP_003816687.1| - 0.031 14.2 0.0 0.22 11.5 0.0 2.0 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|302349049|ref|YP_003816687.1| - 0.068 13.1 0.7 0.22 11.4 0.7 1.9 1 1 0 1 1 1 0 MarR family GntR PF00392.21 gi|302349049|ref|YP_003816687.1| - 0.08 12.6 0.1 0.17 11.5 0.1 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family Ribonuc_red_lgC PF02867.15 gi|302349050|ref|YP_003816688.1| - 5e-159 530.2 0.0 1.1e-158 529.1 0.0 1.5 2 0 0 2 2 2 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|302349050|ref|YP_003816688.1| - 1.3e-19 69.9 0.0 2.8e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain FBA_2 PF07735.17 gi|302349050|ref|YP_003816688.1| - 0.086 13.0 0.7 0.19 11.9 0.7 1.5 1 0 0 1 1 1 0 F-box associated DAO PF01266.24 gi|302349051|ref|YP_003816689.1| - 1.7e-42 146.3 0.0 2e-42 146.1 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|302349051|ref|YP_003816689.1| - 1.1e-05 24.7 0.0 0.0024 17.0 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|302349051|ref|YP_003816689.1| - 6.6e-05 23.1 0.1 0.00015 21.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|302349051|ref|YP_003816689.1| - 8.6e-05 21.9 0.0 0.3 10.3 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|302349051|ref|YP_003816689.1| - 0.0014 17.9 0.0 0.0034 16.7 0.0 1.7 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|302349051|ref|YP_003816689.1| - 0.0045 15.7 0.0 0.3 9.7 0.0 2.8 3 0 0 3 3 3 1 HI0933-like protein Aldolase PF01081.19 gi|302349052|ref|YP_003816690.1| - 0.1 12.0 1.2 10 5.5 0.4 2.3 2 0 0 2 2 2 0 KDPG and KHG aldolase CdhD PF03599.16 gi|302349052|ref|YP_003816690.1| - 0.14 10.8 0.1 2.7 6.6 0.1 2.1 2 0 0 2 2 2 0 CO dehydrogenase/acetyl-CoA synthase delta subunit SurE PF01975.17 gi|302349053|ref|YP_003816691.1| - 9.2e-46 156.1 0.1 1.2e-45 155.7 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE Hemerythrin PF01814.23 gi|302349054|ref|YP_003816692.1| - 9.5e-14 52.1 3.6 2.6e-09 37.8 0.4 1.8 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain Metallophos_2 PF12850.7 gi|302349055|ref|YP_003816693.1| - 2e-07 31.4 0.0 3.3e-07 30.6 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain RimM PF01782.18 gi|302349055|ref|YP_003816693.1| - 0.15 12.3 0.1 0.38 11.0 0.1 1.7 1 0 0 1 1 1 0 RimM N-terminal domain Polyketide_cyc PF03364.20 gi|302349057|ref|YP_003816695.1| - 0.0076 16.5 0.0 0.0094 16.2 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|302349057|ref|YP_003816695.1| - 0.092 13.0 0.8 0.14 12.4 0.8 1.3 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport AMP-binding PF00501.28 gi|302349058|ref|YP_003816696.1| - 7.5e-73 245.5 0.0 9.5e-73 245.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|302349058|ref|YP_003816696.1| - 2.4e-18 66.9 0.4 4.9e-18 65.9 0.4 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|302349058|ref|YP_003816696.1| - 4.2e-13 49.0 1.9 1e-12 47.8 1.9 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Thiolase_C PF02803.18 gi|302349059|ref|YP_003816697.1| - 0.0025 17.5 0.0 0.0049 16.5 0.0 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|302349060|ref|YP_003816698.1| - 1.3e-08 34.5 0.1 5.3e-07 29.3 0.1 2.6 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|302349060|ref|YP_003816698.1| - 0.0018 17.9 0.0 3.1 7.5 0.0 2.8 2 0 0 2 2 2 2 Thiolase, C-terminal domain Peptidase_M22 PF00814.25 gi|302349060|ref|YP_003816698.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Glycoprotease family OB_aCoA_assoc PF01796.17 gi|302349061|ref|YP_003816699.1| - 2.1e-12 46.9 0.1 3.2e-12 46.3 0.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|302349061|ref|YP_003816699.1| - 2.6e-11 43.2 3.9 2.8e-11 43.0 2.6 1.7 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|302349061|ref|YP_003816699.1| - 0.019 15.0 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|302349061|ref|YP_003816699.1| - 0.027 14.2 1.8 0.054 13.2 1.8 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-U1 PF06220.12 gi|302349061|ref|YP_003816699.1| - 0.027 14.2 0.3 0.052 13.3 0.3 1.4 1 0 0 1 1 1 0 U1 zinc finger zf-RING_7 PF02591.15 gi|302349061|ref|YP_003816699.1| - 0.079 13.2 1.6 1.9 8.7 0.3 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain NMD3 PF04981.13 gi|302349061|ref|YP_003816699.1| - 0.091 12.2 0.2 0.13 11.7 0.2 1.2 1 0 0 1 1 1 0 NMD3 family OB_aCoA_assoc PF01796.17 gi|302349062|ref|YP_003816700.1| - 3.2e-09 36.7 0.4 4.9e-09 36.1 0.4 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|302349062|ref|YP_003816700.1| - 2e-06 27.6 0.0 3.3e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Prenyltransf PF01255.19 gi|302349063|ref|YP_003816701.1| - 1.7e-28 99.7 0.0 1.6e-26 93.3 0.0 2.0 1 1 0 1 1 1 1 Putative undecaprenyl diphosphate synthase AIRS PF00586.24 gi|302349064|ref|YP_003816702.1| - 2.4e-09 37.7 0.4 5.1e-09 36.7 0.4 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|302349064|ref|YP_003816702.1| - 3.5e-08 33.7 0.0 5.2e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AGOG PF09171.10 gi|302349065|ref|YP_003816703.1| - 4.7e-75 252.1 0.0 5.6e-75 251.9 0.0 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Ribosomal_S8e PF01201.22 gi|302349066|ref|YP_003816704.1| - 7.4e-27 94.2 0.2 8.9e-27 93.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e Spermine_synth PF01564.17 gi|302349067|ref|YP_003816705.1| - 4.6e-48 163.1 0.0 6.4e-48 162.7 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_25 PF13649.6 gi|302349067|ref|YP_003816705.1| - 1.2e-06 29.1 0.0 2e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|302349067|ref|YP_003816705.1| - 0.00011 22.0 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|302349067|ref|YP_003816705.1| - 0.00017 21.5 0.0 0.00027 20.8 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_11 PF08241.12 gi|302349067|ref|YP_003816705.1| - 0.00043 20.9 0.0 0.0007 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|302349067|ref|YP_003816705.1| - 0.00091 19.9 0.0 0.0018 19.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synt_N PF17284.2 gi|302349067|ref|YP_003816705.1| - 0.0024 17.7 0.0 0.0055 16.6 0.0 1.6 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_2 PF00891.18 gi|302349067|ref|YP_003816705.1| - 0.049 12.9 0.0 0.079 12.2 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain MTS PF05175.14 gi|302349067|ref|YP_003816705.1| - 0.071 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain PsbN PF02468.15 gi|302349069|ref|YP_003816707.1| - 0.037 13.9 7.0 1.1 9.2 0.1 3.2 3 0 0 3 3 3 0 Photosystem II reaction centre N protein (psbN) AAA_10 PF12846.7 gi|302349070|ref|YP_003816708.1| - 1e-08 34.5 0.0 5.1e-06 25.6 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 gi|302349070|ref|YP_003816708.1| - 7.2e-06 26.3 0.0 1.5e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|302349070|ref|YP_003816708.1| - 6.8e-05 21.6 0.0 0.083 11.5 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|302349070|ref|YP_003816708.1| - 0.00088 18.3 0.0 0.016 14.1 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|302349070|ref|YP_003816708.1| - 0.00093 19.6 0.1 0.092 13.1 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|302349070|ref|YP_003816708.1| - 0.014 15.7 0.0 0.13 12.5 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|302349070|ref|YP_003816708.1| - 0.052 13.1 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain T4SS-DNA_transf PF02534.14 gi|302349070|ref|YP_003816708.1| - 0.057 12.2 0.0 0.11 11.3 0.0 1.4 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer FtsK_SpoIIIE PF01580.18 gi|302349070|ref|YP_003816708.1| - 0.13 11.6 0.0 0.88 8.9 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family Ribosomal_L2_C PF03947.18 gi|302349071|ref|YP_003816709.1| - 1.1e-43 148.4 0.1 1.6e-43 147.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|302349071|ref|YP_003816709.1| - 2.9e-13 49.6 0.0 6e-13 48.6 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Phos_pyr_kin PF08543.12 gi|302349072|ref|YP_003816710.1| - 2.1e-95 318.8 0.1 5.8e-94 314.1 0.2 2.0 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|302349072|ref|YP_003816710.1| - 1.4e-55 187.4 0.1 2.4e-55 186.7 0.1 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|302349072|ref|YP_003816710.1| - 3.8e-12 46.1 0.1 7.2e-12 45.2 0.1 1.4 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|302349072|ref|YP_003816710.1| - 0.00017 21.2 0.1 0.00029 20.4 0.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase AIRS_C PF02769.22 gi|302349073|ref|YP_003816711.1| - 1.7e-23 83.5 0.2 2.4e-23 83.0 0.2 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|302349073|ref|YP_003816711.1| - 1.4e-08 35.3 0.1 8.4e-08 32.8 0.0 2.1 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Glyco_tran_28_C PF04101.16 gi|302349074|ref|YP_003816712.1| - 2.6e-05 24.3 0.0 3.4e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.6 gi|302349074|ref|YP_003816712.1| - 0.00011 21.6 0.0 0.053 12.8 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 YmdB PF13277.6 gi|302349074|ref|YP_003816712.1| - 0.023 14.1 0.0 0.043 13.1 0.0 1.4 1 0 0 1 1 1 0 YmdB-like protein Fumerase PF05681.14 gi|302349075|ref|YP_003816713.1| - 7e-85 284.7 0.0 7.9e-85 284.5 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) BppU_IgG PF18667.1 gi|302349075|ref|YP_003816713.1| - 0.0052 16.9 0.0 0.0095 16.1 0.0 1.3 1 0 0 1 1 1 1 Baseplate upper protein immunoglobulin like domain Fumerase_C PF05683.12 gi|302349076|ref|YP_003816714.1| - 1.6e-45 154.9 0.0 2e-45 154.6 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus tRNA_anti-codon PF01336.25 gi|302349076|ref|YP_003816714.1| - 0.075 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain UPF0051 PF01458.17 gi|302349077|ref|YP_003816715.1| - 4.7e-31 108.2 0.0 5.8e-31 107.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) CLU_N PF15044.6 gi|302349077|ref|YP_003816715.1| - 0.073 13.5 0.0 0.27 11.6 0.0 1.9 1 0 0 1 1 1 0 Mitochondrial function, CLU-N-term Phage_tail_APC PF16778.5 gi|302349077|ref|YP_003816715.1| - 0.2 11.6 0.4 0.96 9.4 0.1 2.2 2 0 0 2 2 2 0 Phage tail assembly chaperone protein UPF0051 PF01458.17 gi|302349078|ref|YP_003816716.1| - 6.5e-65 218.9 0.0 9.1e-65 218.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Orbi_VP7 PF00897.17 gi|302349078|ref|YP_003816716.1| - 0.041 12.9 0.0 0.066 12.2 0.0 1.2 1 0 0 1 1 1 0 Orbivirus inner capsid protein VP7 ABC_tran PF00005.27 gi|302349079|ref|YP_003816717.1| - 2.5e-19 70.2 0.0 3.4e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302349079|ref|YP_003816717.1| - 1.5e-08 34.8 0.0 0.0041 17.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|302349079|ref|YP_003816717.1| - 2.5e-07 30.4 0.0 1.3e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|302349079|ref|YP_003816717.1| - 0.0022 17.7 0.0 0.0041 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|302349079|ref|YP_003816717.1| - 0.0024 17.6 0.0 0.0048 16.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|302349079|ref|YP_003816717.1| - 0.0056 16.6 0.0 0.0099 15.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 gi|302349079|ref|YP_003816717.1| - 0.0058 16.8 0.0 0.013 15.6 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|302349079|ref|YP_003816717.1| - 0.009 16.4 0.0 0.016 15.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|302349079|ref|YP_003816717.1| - 0.011 15.3 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|302349079|ref|YP_003816717.1| - 0.014 15.8 0.0 0.022 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|302349079|ref|YP_003816717.1| - 0.029 13.4 0.0 0.048 12.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|302349079|ref|YP_003816717.1| - 0.034 14.6 0.0 0.043 14.3 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|302349079|ref|YP_003816717.1| - 0.04 13.6 0.0 0.079 12.7 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 gi|302349079|ref|YP_003816717.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|302349079|ref|YP_003816717.1| - 0.055 13.7 0.0 0.088 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|302349079|ref|YP_003816717.1| - 0.11 12.8 0.0 0.25 11.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|302349079|ref|YP_003816717.1| - 0.11 12.2 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_13 PF13166.6 gi|302349079|ref|YP_003816717.1| - 0.12 11.0 0.0 4.8 5.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|302349079|ref|YP_003816717.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|302349079|ref|YP_003816717.1| - 0.14 12.7 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain HEPN PF05168.14 gi|302349080|ref|YP_003816718.1| - 1.3e-07 31.7 1.0 7e-07 29.4 1.0 2.0 1 1 0 1 1 1 1 HEPN domain PGDH_C PF16896.5 gi|302349080|ref|YP_003816718.1| - 0.18 11.8 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Phosphogluconate dehydrogenase (decarboxylating) C-term Radical_SAM PF04055.21 gi|302349081|ref|YP_003816719.1| - 1.8e-12 47.9 0.0 2.9e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|302349081|ref|YP_003816719.1| - 0.054 13.5 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 B12 binding domain AA_permease_2 PF13520.6 gi|302349082|ref|YP_003816720.1| - 1.2e-30 106.7 50.7 1.2e-30 106.7 50.7 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|302349082|ref|YP_003816720.1| - 5.2e-21 74.8 38.5 5.2e-21 74.8 38.5 2.1 2 0 0 2 2 2 1 Amino acid permease Aldolase_II PF00596.21 gi|302349083|ref|YP_003816721.1| - 4.8e-38 131.0 0.0 5.4e-38 130.8 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Ribonuc_red_sm PF00268.21 gi|302349084|ref|YP_003816722.1| - 0.057 12.9 2.8 0.34 10.3 0.1 2.1 1 1 1 2 2 2 0 Ribonucleotide reductase, small chain FCH PF00611.23 gi|302349084|ref|YP_003816722.1| - 0.48 10.7 3.4 0.88 9.9 3.4 1.7 1 1 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain Peptidase_M19 PF01244.21 gi|302349085|ref|YP_003816723.1| - 3.2e-66 223.7 0.0 3.9e-66 223.4 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 gi|302349085|ref|YP_003816723.1| - 0.0025 17.6 0.0 0.0051 16.6 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase DUF424 PF04242.13 gi|302349086|ref|YP_003816724.1| - 3.6e-16 59.2 0.0 4.2e-16 59.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) ETF PF01012.21 gi|302349087|ref|YP_003816725.1| - 6.1e-37 127.3 0.3 9.3e-37 126.7 0.3 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|302349088|ref|YP_003816726.1| - 2.6e-30 104.3 0.0 7.9e-30 102.7 0.0 1.9 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|302349088|ref|YP_003816726.1| - 1.5e-12 47.8 0.2 2.4e-12 47.1 0.2 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain POR_N PF01855.19 gi|302349089|ref|YP_003816727.1| - 1.4e-59 201.6 0.0 2.1e-59 201.1 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|302349089|ref|YP_003816727.1| - 1.6e-33 116.2 0.1 5.4e-33 114.5 0.1 1.9 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|302349089|ref|YP_003816727.1| - 1.7e-07 31.5 0.0 4.4e-07 30.2 0.0 1.8 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|302349089|ref|YP_003816727.1| - 0.00011 21.9 0.0 0.00026 20.6 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|302349089|ref|YP_003816727.1| - 0.018 14.9 0.0 0.047 13.6 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|302349090|ref|YP_003816728.1| - 1.1e-28 100.0 0.1 4.2e-28 98.1 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|302349090|ref|YP_003816728.1| - 8.7e-21 73.8 0.1 1.5e-20 73.1 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal EamA PF00892.20 gi|302349091|ref|YP_003816729.1| - 3.9e-19 69.2 25.4 7.3e-14 52.1 13.9 2.3 2 1 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|302349091|ref|YP_003816729.1| - 0.00097 18.6 2.6 0.0017 17.8 2.6 1.4 1 0 0 1 1 1 1 Triose-phosphate Transporter family CSG2 PF16965.5 gi|302349091|ref|YP_003816729.1| - 0.1 11.5 0.1 0.1 11.5 0.1 1.6 2 0 0 2 2 2 0 Ceramide synthase regulator DUF296 PF03479.15 gi|302349092|ref|YP_003816730.1| - 1e-17 64.4 0.1 1.3e-17 64.1 0.1 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain AFOR_C PF01314.18 gi|302349093|ref|YP_003816731.1| - 4.4e-112 374.9 0.0 5.7e-112 374.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|302349093|ref|YP_003816731.1| - 6.2e-75 251.4 0.0 1e-74 250.7 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SHOCT PF09851.9 gi|302349093|ref|YP_003816731.1| - 0.26 11.1 1.3 0.56 10.0 1.3 1.6 1 0 0 1 1 1 0 Short C-terminal domain Fer4 PF00037.27 gi|302349094|ref|YP_003816732.1| - 1.7e-12 46.6 37.0 3.2e-07 29.9 3.1 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|302349094|ref|YP_003816732.1| - 1.7e-12 47.7 26.0 3.1e-06 27.7 11.4 3.6 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|302349094|ref|YP_003816732.1| - 5.2e-12 45.3 33.1 6.3e-05 22.9 2.9 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|302349094|ref|YP_003816732.1| - 2.4e-10 40.4 46.1 5.5e-06 26.4 10.2 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|302349094|ref|YP_003816732.1| - 1.7e-09 37.7 9.6 1.7e-09 37.7 9.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|302349094|ref|YP_003816732.1| - 3.6e-08 34.2 25.3 0.016 16.1 2.6 4.2 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|302349094|ref|YP_003816732.1| - 8.4e-08 31.9 32.6 0.00042 20.3 2.2 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|302349094|ref|YP_003816732.1| - 6e-07 29.5 32.0 5.7e-05 23.1 11.8 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|302349094|ref|YP_003816732.1| - 3.2e-06 27.7 42.7 0.0071 17.2 4.9 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|302349094|ref|YP_003816732.1| - 1.2e-05 25.4 30.4 0.0046 17.0 11.1 3.6 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|302349094|ref|YP_003816732.1| - 0.00014 22.4 23.3 0.032 14.8 1.9 4.1 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|302349094|ref|YP_003816732.1| - 0.022 15.3 0.9 0.022 15.3 0.9 4.1 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|302349094|ref|YP_003816732.1| - 0.061 13.9 4.4 0.061 13.9 4.4 4.5 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|302349094|ref|YP_003816732.1| - 0.065 13.7 26.2 5.7 7.5 6.8 3.5 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|302349094|ref|YP_003816732.1| - 0.17 12.7 20.2 0.25 12.1 0.8 4.0 4 0 0 4 4 4 0 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|302349095|ref|YP_003816733.1| - 3.2e-16 60.2 0.0 6e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|302349095|ref|YP_003816733.1| - 0.076 13.1 0.0 0.23 11.5 0.0 1.8 1 0 0 1 1 1 0 B12 binding domain Radical_SAM PF04055.21 gi|302349096|ref|YP_003816734.1| - 5.7e-25 88.6 0.0 9e-25 88.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|302349096|ref|YP_003816734.1| - 2.9e-07 30.9 0.3 6.3e-07 29.8 0.3 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|302349096|ref|YP_003816734.1| - 1.4e-06 28.6 0.0 2.4e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|302349096|ref|YP_003816734.1| - 6e-05 23.2 0.0 0.0001 22.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PadR PF03551.14 gi|302349097|ref|YP_003816735.1| - 8.2e-15 54.5 0.0 1.8e-14 53.5 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|302349097|ref|YP_003816735.1| - 0.00029 21.5 0.0 0.0005 20.7 0.0 1.4 1 0 0 1 1 1 1 Replication terminator protein T3SS_needle_E PF08988.10 gi|302349097|ref|YP_003816735.1| - 0.0015 18.6 1.2 0.0028 17.7 1.2 1.4 1 0 0 1 1 1 1 Type III secretion system, cytoplasmic E component of needle HTH_45 PF14947.6 gi|302349097|ref|YP_003816735.1| - 0.0028 17.6 0.0 0.0082 16.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|302349097|ref|YP_003816735.1| - 0.02 15.0 0.2 0.046 13.8 0.0 1.7 2 0 0 2 2 2 0 Mrr N-terminal domain DUF4364 PF14277.6 gi|302349097|ref|YP_003816735.1| - 0.034 13.9 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) NUDIX PF00293.28 gi|302349098|ref|YP_003816736.1| - 4.7e-18 65.5 0.0 5.8e-18 65.2 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain TM_helix PF05552.12 gi|302349099|ref|YP_003816737.1| - 5.4e-05 23.1 0.4 5.4e-05 23.1 0.4 5.2 6 1 0 6 6 6 2 Conserved TM helix Lipid_DES PF08557.10 gi|302349099|ref|YP_003816737.1| - 0.065 12.7 0.0 1.4 8.5 0.0 2.3 2 0 0 2 2 2 0 Sphingolipid Delta4-desaturase (DES) TusA PF01206.17 gi|302349100|ref|YP_003816738.1| - 1.1e-20 73.2 0.0 1.2e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|302349100|ref|YP_003816738.1| - 0.0028 17.5 0.0 0.0063 16.3 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) Sulf_transp PF04143.14 gi|302349101|ref|YP_003816739.1| - 4.2e-36 125.1 41.9 4.2e-36 125.1 41.9 2.1 2 0 0 2 2 2 1 Sulphur transport Pox_I5 PF04713.12 gi|302349101|ref|YP_003816739.1| - 0.13 12.3 0.2 0.13 12.3 0.2 3.5 4 0 0 4 4 4 0 Poxvirus protein I5 ELFV_dehydrog PF00208.21 gi|302349102|ref|YP_003816740.1| - 1.9e-68 230.8 4.6 2.5e-68 230.4 4.6 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|302349102|ref|YP_003816740.1| - 7.1e-52 174.7 0.0 1.5e-51 173.7 0.0 1.6 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|302349102|ref|YP_003816740.1| - 2.9e-05 23.5 0.1 5.2e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|302349102|ref|YP_003816740.1| - 0.0055 17.1 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Bac_GDH PF05088.12 gi|302349102|ref|YP_003816740.1| - 0.0082 13.7 0.1 0.012 13.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase IlvN PF07991.12 gi|302349102|ref|YP_003816740.1| - 0.02 14.5 0.1 0.11 12.1 0.1 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|302349102|ref|YP_003816740.1| - 0.04 14.0 0.5 0.04 14.0 0.5 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MMR_HSR1 PF01926.23 gi|302349103|ref|YP_003816741.1| - 5.1e-16 58.8 0.0 9.1e-16 58.0 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|302349103|ref|YP_003816741.1| - 7.3e-16 57.7 0.0 1.6e-15 56.6 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) NOG1_N PF17835.1 gi|302349103|ref|YP_003816741.1| - 1.1e-13 51.4 0.0 1.9e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 NOG1 N-terminal helical domain FeoB_N PF02421.18 gi|302349103|ref|YP_003816741.1| - 1.6e-11 44.0 0.0 2.5e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|302349103|ref|YP_003816741.1| - 0.00032 20.4 0.0 0.0023 17.7 0.0 2.2 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|302349103|ref|YP_003816741.1| - 0.0006 20.2 0.0 0.0016 18.9 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain AIG1 PF04548.16 gi|302349103|ref|YP_003816741.1| - 0.0021 17.4 0.0 0.0033 16.8 0.0 1.4 1 0 0 1 1 1 1 AIG1 family RsgA_GTPase PF03193.16 gi|302349103|ref|YP_003816741.1| - 0.012 15.6 0.7 5.7 6.8 0.0 3.0 2 1 0 2 2 2 0 RsgA GTPase AAA_PrkA PF08298.11 gi|302349103|ref|YP_003816741.1| - 0.016 14.1 0.0 0.5 9.2 0.0 2.2 1 1 1 2 2 2 0 PrkA AAA domain ATP_bind_1 PF03029.17 gi|302349103|ref|YP_003816741.1| - 0.02 14.7 0.0 2.2 8.0 0.0 2.2 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|302349103|ref|YP_003816741.1| - 0.02 14.5 0.0 4.7 6.7 0.0 3.0 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain AAA_22 PF13401.6 gi|302349103|ref|YP_003816741.1| - 0.028 14.7 0.0 0.072 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|302349103|ref|YP_003816741.1| - 0.089 12.8 0.8 4.4 7.3 0.1 2.4 1 1 1 2 2 2 0 Dynamin family PPV_E1_C PF00519.17 gi|302349103|ref|YP_003816741.1| - 0.11 11.3 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase TF_Zn_Ribbon PF08271.12 gi|302349104|ref|YP_003816742.1| - 1.6e-09 37.1 0.2 2.5e-09 36.5 0.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|302349104|ref|YP_003816742.1| - 1.9e-05 24.2 0.2 3e-05 23.6 0.2 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|302349104|ref|YP_003816742.1| - 6.3e-05 22.6 0.3 9.8e-05 22.0 0.3 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 gi|302349104|ref|YP_003816742.1| - 0.0057 16.6 0.6 0.013 15.5 0.6 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|302349104|ref|YP_003816742.1| - 0.018 15.4 0.1 0.042 14.2 0.1 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.12 gi|302349104|ref|YP_003816742.1| - 0.023 15.0 0.2 0.044 14.1 0.2 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.6 gi|302349104|ref|YP_003816742.1| - 0.04 13.3 0.8 0.56 9.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|302349104|ref|YP_003816742.1| - 0.055 14.0 1.3 8.6 7.0 0.1 2.3 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain SR1P PF13790.6 gi|302349104|ref|YP_003816742.1| - 0.06 13.5 0.6 0.12 12.5 0.6 1.5 1 0 0 1 1 1 0 SR1 protein Trm112p PF03966.16 gi|302349104|ref|YP_003816742.1| - 0.075 13.6 1.5 0.19 12.3 0.6 2.1 2 1 0 2 2 1 0 Trm112p-like protein CDPS PF16715.5 gi|302349104|ref|YP_003816742.1| - 0.09 12.4 0.3 0.14 11.8 0.3 1.2 1 0 0 1 1 1 0 Cyclodipeptide synthase Ribosomal_S27e PF01667.17 gi|302349104|ref|YP_003816742.1| - 0.093 12.5 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 zinc_ribbon_2 PF13240.6 gi|302349104|ref|YP_003816742.1| - 0.1 12.3 1.9 2.7 7.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|302349104|ref|YP_003816742.1| - 0.17 11.8 0.5 0.35 10.8 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|302349104|ref|YP_003816742.1| - 0.21 11.7 1.0 19 5.4 0.0 2.3 1 1 0 2 2 2 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|302349104|ref|YP_003816742.1| - 0.33 10.9 2.0 0.69 9.9 2.0 1.5 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Phage_integrase PF00589.22 gi|302349105|ref|YP_003816743.1| - 3.1e-33 115.0 0.2 1.7e-32 112.6 0.2 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|302349105|ref|YP_003816743.1| - 2.6e-07 30.8 0.0 1.4e-06 28.5 0.0 2.2 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|302349105|ref|YP_003816743.1| - 4.9e-07 30.1 0.0 0.00064 20.1 0.0 2.3 2 0 0 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|302349105|ref|YP_003816743.1| - 0.011 15.6 0.1 1 9.3 0.0 2.2 2 0 0 2 2 2 0 Archaeal phage integrase Vut_1 PF02592.15 gi|302349106|ref|YP_003816744.1| - 0.01 16.2 0.1 1.5 9.1 0.0 2.2 2 0 0 2 2 2 0 Putative vitamin uptake transporter NIBRIN_BRCT_II PF16508.5 gi|302349106|ref|YP_003816744.1| - 0.067 13.5 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Second BRCT domain on Nijmegen syndrome breakage protein GatB_N PF02934.15 gi|302349108|ref|YP_003816746.1| - 1.6e-73 247.5 0.0 2.2e-73 247.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|302349108|ref|YP_003816746.1| - 1.5e-21 76.8 1.5 1.5e-21 76.8 1.5 2.1 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|302349108|ref|YP_003816746.1| - 1.9e-17 63.2 0.1 8.1e-17 61.3 0.0 2.2 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|302349108|ref|YP_003816746.1| - 0.00088 19.4 0.9 0.0027 17.8 0.9 1.8 1 0 0 1 1 1 1 Yqey-like protein ComX PF05952.12 gi|302349108|ref|YP_003816746.1| - 0.015 15.3 0.3 0.95 9.4 0.0 3.3 3 0 0 3 3 3 0 Bacillus competence pheromone ComX Amdase PF17645.1 gi|302349108|ref|YP_003816746.1| - 0.065 12.8 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Arylmalonate decarboxylase Asparaginase PF00710.20 gi|302349109|ref|YP_003816747.1| - 2.3e-61 206.7 0.0 3.8e-61 206.0 0.0 1.4 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|302349109|ref|YP_003816747.1| - 5.3e-35 120.1 0.0 1.1e-33 115.9 0.0 2.7 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|302349109|ref|YP_003816747.1| - 8.5e-20 69.8 0.0 1.8e-19 68.8 0.0 1.6 1 0 0 1 1 1 1 GatD N-terminal domain HGD-D PF06050.13 gi|302349109|ref|YP_003816747.1| - 0.061 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Peripla_BP_4 PF13407.6 gi|302349109|ref|YP_003816747.1| - 0.19 11.3 0.0 1.1 8.7 0.0 2.2 3 0 0 3 3 3 0 Periplasmic binding protein domain Ribosomal_S30 PF04758.14 gi|302349110|ref|YP_003816748.1| - 5.9e-08 32.8 5.6 6.6e-08 32.6 5.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S30 Nop PF01798.18 gi|302349111|ref|YP_003816749.1| - 1.2e-71 240.9 0.0 1.6e-71 240.4 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin Fibrillarin PF01269.17 gi|302349112|ref|YP_003816750.1| - 8.3e-94 312.9 0.0 9.2e-94 312.8 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|302349112|ref|YP_003816750.1| - 0.0043 16.8 0.0 0.008 16.0 0.0 1.4 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|302349112|ref|YP_003816750.1| - 0.038 13.6 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit DUF61 PF01886.16 gi|302349113|ref|YP_003816751.1| - 5.9e-15 55.4 0.0 6.9e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF61 Stealth_CR4 PF17103.5 gi|302349113|ref|YP_003816751.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Stealth protein CR4, conserved region 4 PALP PF00291.25 gi|302349114|ref|YP_003816752.1| - 6e-84 281.9 1.6 7.1e-84 281.7 1.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|302349114|ref|YP_003816752.1| - 1.5e-07 31.0 0.0 3.7e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|302349114|ref|YP_003816752.1| - 0.061 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 ACT domain TAFII28 PF04719.14 gi|302349115|ref|YP_003816753.1| - 0.049 13.7 0.0 1.7 8.8 0.0 2.2 1 1 0 1 1 1 0 hTAFII28-like protein conserved region DUF3222 PF11519.8 gi|302349115|ref|YP_003816753.1| - 0.16 12.3 0.0 11 6.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3222) AsnC_trans_reg PF01037.21 gi|302349116|ref|YP_003816754.1| - 8.8e-13 48.0 0.0 1.4e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|302349116|ref|YP_003816754.1| - 2.3e-11 43.1 0.1 7e-11 41.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|302349116|ref|YP_003816754.1| - 3e-11 42.9 0.0 5.6e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|302349116|ref|YP_003816754.1| - 6e-06 26.1 0.0 1.4e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain NapD PF03927.13 gi|302349116|ref|YP_003816754.1| - 0.00012 22.1 0.0 0.0032 17.5 0.0 2.2 1 1 1 2 2 2 1 NapD protein TrmB PF01978.19 gi|302349116|ref|YP_003816754.1| - 0.00048 19.9 0.2 0.0013 18.6 0.2 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|302349116|ref|YP_003816754.1| - 0.00069 19.3 0.0 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|302349116|ref|YP_003816754.1| - 0.00071 19.6 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|302349116|ref|YP_003816754.1| - 0.0008 19.3 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|302349116|ref|YP_003816754.1| - 0.0037 17.0 0.0 0.011 15.5 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|302349116|ref|YP_003816754.1| - 0.0039 17.3 0.0 0.0068 16.5 0.0 1.4 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_20 PF12840.7 gi|302349116|ref|YP_003816754.1| - 0.004 17.2 0.0 0.039 14.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|302349116|ref|YP_003816754.1| - 0.0052 16.6 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Mga PF08280.11 gi|302349116|ref|YP_003816754.1| - 0.0068 16.4 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_22 PF13309.6 gi|302349116|ref|YP_003816754.1| - 0.01 15.9 0.2 0.052 13.6 0.2 2.2 1 1 0 1 1 1 0 HTH domain HTH_7 PF02796.15 gi|302349116|ref|YP_003816754.1| - 0.016 15.2 0.0 0.073 13.2 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.12 gi|302349116|ref|YP_003816754.1| - 0.019 14.7 0.0 0.04 13.7 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|302349116|ref|YP_003816754.1| - 0.021 14.5 0.0 0.057 13.1 0.0 1.7 2 0 0 2 2 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|302349116|ref|YP_003816754.1| - 0.034 14.0 0.0 0.099 12.5 0.0 1.8 2 0 0 2 2 1 0 MarR family Mga PF05043.13 gi|302349116|ref|YP_003816754.1| - 0.036 14.6 0.0 0.068 13.8 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain Fe_dep_repress PF01325.19 gi|302349116|ref|YP_003816754.1| - 0.062 13.5 0.1 0.13 12.5 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Paramyxo_C PF01692.18 gi|302349116|ref|YP_003816754.1| - 0.064 12.6 0.0 0.087 12.2 0.0 1.2 1 0 0 1 1 1 0 Paramyxovirus non-structural protein C HxlR PF01638.17 gi|302349116|ref|YP_003816754.1| - 0.075 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DDRGK PF09756.9 gi|302349116|ref|YP_003816754.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_29 PF13551.6 gi|302349116|ref|YP_003816754.1| - 0.17 11.9 0.0 0.4 10.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix NAD_binding_8 PF13450.6 gi|302349117|ref|YP_003816755.1| - 1.3e-06 28.6 0.1 3.1e-06 27.3 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|302349117|ref|YP_003816755.1| - 0.0012 17.7 0.0 0.0024 16.7 0.0 1.5 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|302349117|ref|YP_003816755.1| - 0.0015 17.7 0.3 0.0024 17.0 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.24 gi|302349117|ref|YP_003816755.1| - 0.003 17.2 0.2 0.013 15.1 0.0 2.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|302349117|ref|YP_003816755.1| - 0.0044 16.3 0.1 0.0059 15.9 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|302349117|ref|YP_003816755.1| - 0.008 15.5 0.1 0.019 14.2 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|302349117|ref|YP_003816755.1| - 0.011 14.8 0.3 0.024 13.7 0.3 1.5 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|302349117|ref|YP_003816755.1| - 0.021 14.1 0.0 0.031 13.5 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|302349117|ref|YP_003816755.1| - 0.026 13.9 0.3 0.042 13.2 0.3 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Thi4 PF01946.17 gi|302349117|ref|YP_003816755.1| - 0.039 13.2 0.0 0.066 12.4 0.0 1.5 1 0 0 1 1 1 0 Thi4 family Archease PF01951.16 gi|302349118|ref|YP_003816756.1| - 3.3e-39 134.3 0.0 3.7e-39 134.1 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Peptidase_M54 PF07998.11 gi|302349119|ref|YP_003816757.1| - 7.2e-27 94.6 0.0 9.1e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|302349119|ref|YP_003816757.1| - 8.2e-05 22.5 0.0 8.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.8 gi|302349119|ref|YP_003816757.1| - 0.0082 14.8 0.0 0.011 14.4 0.0 1.1 1 0 0 1 1 1 1 Putative peptidase family DUF4953 PF16313.5 gi|302349119|ref|YP_003816757.1| - 0.06 12.6 0.1 0.079 12.2 0.1 1.2 1 0 0 1 1 1 0 Met-zincin Peptidase_M43 PF05572.13 gi|302349119|ref|YP_003816757.1| - 0.089 12.7 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M66 PF10462.9 gi|302349119|ref|YP_003816757.1| - 0.097 11.6 0.1 0.13 11.2 0.1 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_3 PF13582.6 gi|302349119|ref|YP_003816757.1| - 0.11 13.0 0.0 0.14 12.7 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like HhH-GPD PF00730.25 gi|302349120|ref|YP_003816758.1| - 5.9e-14 52.4 0.0 7.4e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|302349120|ref|YP_003816758.1| - 3.9e-07 30.2 7.1 6e-07 29.6 7.1 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF3320 PF11784.8 gi|302349120|ref|YP_003816758.1| - 0.071 13.1 0.1 0.18 11.8 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3320) HHH_5 PF14520.6 gi|302349120|ref|YP_003816758.1| - 0.13 12.9 0.3 1.5 9.4 0.0 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix domain Cdc6_C PF09079.11 gi|302349122|ref|YP_003816760.1| - 3e-13 49.5 0.0 9.8e-13 47.9 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|302349122|ref|YP_003816760.1| - 7.1e-10 39.3 0.0 1.8e-09 38.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|302349122|ref|YP_003816760.1| - 4.7e-05 22.9 0.0 8.9e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA_16 PF13191.6 gi|302349122|ref|YP_003816760.1| - 0.0017 18.8 0.1 0.012 16.0 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|302349122|ref|YP_003816760.1| - 0.0071 16.7 0.2 0.02 15.2 0.2 1.7 1 0 0 1 1 1 1 AAA C-terminal domain AAA PF00004.29 gi|302349122|ref|YP_003816760.1| - 0.0078 16.6 0.0 0.019 15.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|302349122|ref|YP_003816760.1| - 0.012 14.8 0.0 0.054 12.7 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain Trigger_C PF05698.14 gi|302349122|ref|YP_003816760.1| - 0.021 14.8 0.0 0.08 12.9 0.0 1.9 1 1 1 2 2 2 0 Bacterial trigger factor protein (TF) C-terminus AAA_35 PF14516.6 gi|302349122|ref|YP_003816760.1| - 0.027 13.3 0.1 0.043 12.7 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain ATPase_2 PF01637.18 gi|302349122|ref|YP_003816760.1| - 0.043 13.7 0.5 0.19 11.6 0.5 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|302349122|ref|YP_003816760.1| - 0.061 13.2 0.0 0.44 10.4 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|302349122|ref|YP_003816760.1| - 0.093 12.3 0.0 26 4.3 0.0 3.1 3 0 0 3 3 3 0 AAA domain RuvB_N PF05496.12 gi|302349122|ref|YP_003816760.1| - 0.13 12.0 0.2 1.1 9.0 0.0 2.1 1 1 1 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|302349122|ref|YP_003816760.1| - 0.14 12.5 0.0 0.35 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Rad51 PF08423.11 gi|302349122|ref|YP_003816760.1| - 0.16 11.2 0.3 6.9 5.8 0.0 2.5 3 0 0 3 3 3 0 Rad51 TrmB PF01978.19 gi|302349123|ref|YP_003816761.1| - 6.3e-07 29.2 0.5 1e-06 28.5 0.1 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|302349123|ref|YP_003816761.1| - 1.8e-05 24.6 0.0 2.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|302349123|ref|YP_003816761.1| - 5.4e-05 23.0 0.9 0.00016 21.5 0.5 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|302349123|ref|YP_003816761.1| - 8.3e-05 22.1 0.3 0.00015 21.2 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 gi|302349123|ref|YP_003816761.1| - 0.00077 19.5 0.2 0.0011 19.0 0.2 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|302349123|ref|YP_003816761.1| - 0.0051 17.1 0.1 0.0079 16.5 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|302349123|ref|YP_003816761.1| - 0.016 15.1 0.2 0.065 13.2 0.1 1.8 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.7 gi|302349123|ref|YP_003816761.1| - 0.025 14.5 0.3 0.044 13.7 0.3 1.4 1 0 0 1 1 1 0 MarR family TBPIP PF07106.13 gi|302349123|ref|YP_003816761.1| - 0.028 14.3 0.0 0.06 13.3 0.0 1.6 1 1 0 1 1 1 0 TBPIP/Hop2 winged helix domain GatB_Yqey PF02637.18 gi|302349123|ref|YP_003816761.1| - 0.071 13.0 0.0 0.082 12.8 0.0 1.1 1 0 0 1 1 1 0 GatB domain HTH_20 PF12840.7 gi|302349123|ref|YP_003816761.1| - 0.072 13.2 0.8 0.13 12.3 0.3 1.7 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_41 PF14502.6 gi|302349123|ref|YP_003816761.1| - 0.076 12.7 0.3 0.15 11.8 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain MoaC PF01967.21 gi|302349124|ref|YP_003816762.1| - 1.7e-44 151.2 1.2 1.9e-44 151.1 1.2 1.0 1 0 0 1 1 1 1 MoaC family DHH PF01368.20 gi|302349126|ref|YP_003816764.1| - 0.002 18.4 0.0 0.0038 17.4 0.0 1.4 1 0 0 1 1 1 1 DHH family ADSL_C PF10397.9 gi|302349126|ref|YP_003816764.1| - 0.047 14.2 0.3 1.2 9.7 0.1 2.5 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminus DAO PF01266.24 gi|302349127|ref|YP_003816765.1| - 2.3e-06 27.5 0.0 0.0033 17.0 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|302349127|ref|YP_003816765.1| - 5.4e-06 26.5 0.1 5.4e-06 26.5 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|302349127|ref|YP_003816765.1| - 5.6e-06 26.8 0.1 0.0011 19.4 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|302349127|ref|YP_003816765.1| - 5.5e-05 22.6 2.8 0.028 13.7 0.2 3.1 3 1 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|302349127|ref|YP_003816765.1| - 0.00014 20.7 0.0 0.0002 20.2 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|302349127|ref|YP_003816765.1| - 0.00019 20.8 0.1 0.00081 18.7 0.1 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|302349127|ref|YP_003816765.1| - 0.0047 16.0 1.2 0.28 10.2 0.2 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|302349127|ref|YP_003816765.1| - 0.0061 15.7 0.0 0.027 13.6 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|302349127|ref|YP_003816765.1| - 0.022 13.8 0.1 0.032 13.3 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|302349127|ref|YP_003816765.1| - 0.079 12.9 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|302349127|ref|YP_003816765.1| - 0.22 11.4 0.1 0.41 10.5 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aconitase PF00330.20 gi|302349128|ref|YP_003816766.1| - 2.6e-178 593.8 0.0 3.3e-178 593.4 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|302349128|ref|YP_003816766.1| - 3.2e-37 127.8 0.0 7e-37 126.7 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain AA_permease PF00324.21 gi|302349129|ref|YP_003816767.1| - 1.8e-11 43.3 40.3 2.7e-10 39.5 40.3 2.2 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|302349129|ref|YP_003816767.1| - 1.7e-09 37.1 37.8 2.7e-09 36.4 37.6 1.5 1 1 0 1 1 1 1 Amino acid permease Abhydrolase_1 PF00561.20 gi|302349130|ref|YP_003816768.1| - 4.8e-15 55.9 0.3 1.5e-12 47.7 0.3 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|302349130|ref|YP_003816768.1| - 1.5e-10 40.8 0.3 6.5e-08 32.1 0.2 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|302349130|ref|YP_003816768.1| - 1.3e-06 29.2 4.2 3.1e-06 27.9 4.2 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.14 gi|302349130|ref|YP_003816768.1| - 0.00011 21.0 0.2 0.00018 20.3 0.2 1.4 1 1 0 1 1 1 1 Ndr family Abhydrolase_5 PF12695.7 gi|302349130|ref|YP_003816768.1| - 0.0019 18.0 0.0 0.0065 16.3 0.0 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 gi|302349130|ref|YP_003816768.1| - 0.021 15.0 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Peptidase_S9 PF00326.21 gi|302349130|ref|YP_003816768.1| - 0.03 13.8 0.2 5 6.5 0.0 2.4 2 1 1 3 3 3 0 Prolyl oligopeptidase family zf-C2H2_3 PF13878.6 gi|302349131|ref|YP_003816769.1| - 0.0028 17.5 1.0 0.0043 16.8 0.1 1.7 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO Corona_NS3b PF03053.14 gi|302349132|ref|YP_003816770.1| - 0.2 11.4 6.8 0.41 10.4 6.8 1.5 1 0 0 1 1 1 0 ORF3b coronavirus protein OSR1_C PF12202.8 gi|302349133|ref|YP_003816771.1| - 0.057 13.6 0.0 13 6.1 0.0 2.3 2 0 0 2 2 2 0 Oxidative-stress-responsive kinase 1 C-terminal domain IFRD PF05004.13 gi|302349133|ref|YP_003816771.1| - 0.13 11.4 0.4 0.14 11.2 0.4 1.3 1 1 0 1 1 1 0 Interferon-related developmental regulator (IFRD) DUF4072 PF13284.6 gi|302349134|ref|YP_003816772.1| - 0.025 15.0 0.2 0.043 14.3 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4072) DeoC PF01791.9 gi|302349135|ref|YP_003816773.1| - 3.1e-17 63.0 0.0 4.1e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase FAD-oxidase_C PF02913.19 gi|302349136|ref|YP_003816774.1| - 3.8e-61 206.9 0.0 5.4e-61 206.4 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|302349136|ref|YP_003816774.1| - 7.2e-37 126.2 0.2 1.2e-36 125.5 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain AP_endonuc_2 PF01261.24 gi|302349136|ref|YP_003816774.1| - 0.065 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel PLL PF18587.1 gi|302349137|ref|YP_003816775.1| - 0.029 14.5 0.0 0.031 14.4 0.0 1.0 1 0 0 1 1 1 0 PTX/LNS-Like (PLL) domain SIS PF01380.22 gi|302349138|ref|YP_003816776.1| - 5.8e-41 139.4 0.3 2.6e-26 92.0 0.3 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|302349138|ref|YP_003816776.1| - 1.2e-20 74.1 0.0 2.8e-20 72.9 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|302349138|ref|YP_003816776.1| - 4.4e-18 65.4 0.0 1e-17 64.2 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|302349138|ref|YP_003816776.1| - 0.0021 18.1 0.6 0.026 14.6 0.3 2.3 2 0 0 2 2 2 1 SIS domain bact-PGI_C PF10432.9 gi|302349138|ref|YP_003816776.1| - 0.013 15.5 0.2 0.025 14.6 0.2 1.4 1 0 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal SIS domain GATase_4 PF13230.6 gi|302349138|ref|YP_003816776.1| - 0.19 10.6 0.0 0.32 9.8 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferases class-II Amidohydro_1 PF01979.20 gi|302349139|ref|YP_003816777.1| - 5.8e-16 58.7 0.0 9e-16 58.1 0.0 1.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|302349139|ref|YP_003816777.1| - 1.4e-08 34.7 2.3 0.0012 18.4 0.2 2.5 3 0 0 3 3 3 2 Amidohydrolase family Phage_X PF05155.15 gi|302349139|ref|YP_003816777.1| - 0.23 11.9 0.0 0.98 9.9 0.0 1.8 2 0 0 2 2 2 0 Phage X family LysE PF01810.18 gi|302349140|ref|YP_003816778.1| - 5.1e-13 48.9 13.3 7e-13 48.5 13.3 1.2 1 0 0 1 1 1 1 LysE type translocator Methyltransf_24 PF13578.6 gi|302349141|ref|YP_003816779.1| - 3.9e-12 47.1 0.1 5.2e-12 46.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|302349141|ref|YP_003816779.1| - 1.5e-11 43.9 0.0 1.9e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_25 PF13649.6 gi|302349141|ref|YP_003816779.1| - 1.4e-06 28.9 0.1 2.1e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|302349141|ref|YP_003816779.1| - 1.2e-05 25.9 0.1 2e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|302349141|ref|YP_003816779.1| - 1.8e-05 24.6 0.0 2.5e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|302349141|ref|YP_003816779.1| - 3.9e-05 23.5 0.0 5.3e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|302349141|ref|YP_003816779.1| - 0.01 15.3 0.0 0.044 13.2 0.0 1.8 2 0 0 2 2 2 0 Putative methyltransferase MTS PF05175.14 gi|302349141|ref|YP_003816779.1| - 0.025 14.1 0.1 0.037 13.6 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase small domain GCD14 PF08704.10 gi|302349141|ref|YP_003816779.1| - 0.12 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit SnoaL_2 PF12680.7 gi|302349142|ref|YP_003816780.1| - 0.0002 22.0 0.0 15 6.3 0.0 4.2 4 0 0 4 4 4 1 SnoaL-like domain CNOT1_HEAT_N PF16419.5 gi|302349142|ref|YP_003816780.1| - 0.00069 19.4 0.1 12 5.5 0.0 3.4 3 1 0 3 3 3 3 CCR4-NOT transcription complex subunit 1 HEAT repeat DUF393 PF04134.12 gi|302349142|ref|YP_003816780.1| - 0.0012 20.1 1.0 39 5.6 0.0 4.5 4 0 0 4 4 4 0 Protein of unknown function, DUF393 HALZ PF02183.18 gi|302349142|ref|YP_003816780.1| - 0.0046 17.1 4.8 0.33 11.2 0.3 2.3 1 1 1 2 2 2 2 Homeobox associated leucine zipper Spc7 PF08317.11 gi|302349142|ref|YP_003816780.1| - 0.17 10.7 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4744 PF15918.5 gi|302349142|ref|YP_003816780.1| - 0.79 10.6 8.5 6.9 7.6 8.5 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4744) SHE3 PF17078.5 gi|302349142|ref|YP_003816780.1| - 1.3 8.7 3.3 2 8.1 3.3 1.2 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 HTH_5 PF01022.20 gi|302349143|ref|YP_003816781.1| - 2.2e-12 46.6 0.1 3.4e-12 46.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|302349143|ref|YP_003816781.1| - 5.2e-09 36.0 0.1 7.6e-09 35.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|302349143|ref|YP_003816781.1| - 1.5e-07 31.3 0.0 2e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 gi|302349143|ref|YP_003816781.1| - 4e-07 29.8 0.1 9.4e-07 28.6 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|302349143|ref|YP_003816781.1| - 2.2e-06 27.7 0.0 3.1e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|302349143|ref|YP_003816781.1| - 2.5e-06 27.3 0.0 4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|302349143|ref|YP_003816781.1| - 1.9e-05 24.3 0.0 3.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 gi|302349143|ref|YP_003816781.1| - 5.1e-05 22.7 0.1 8.3e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|302349143|ref|YP_003816781.1| - 0.00029 20.7 0.0 0.00049 19.9 0.0 1.4 1 0 0 1 1 1 1 MarR family RP-C PF03428.13 gi|302349143|ref|YP_003816781.1| - 0.00067 19.4 0.0 0.0008 19.1 0.0 1.1 1 0 0 1 1 1 1 Replication protein C N-terminal domain Rrf2 PF02082.20 gi|302349143|ref|YP_003816781.1| - 0.0013 19.0 0.0 0.0017 18.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator GerE PF00196.19 gi|302349143|ref|YP_003816781.1| - 0.0015 18.0 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.10 gi|302349143|ref|YP_003816781.1| - 0.002 17.9 0.2 0.0033 17.2 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain FaeA PF04703.12 gi|302349143|ref|YP_003816781.1| - 0.0021 18.4 0.1 0.0069 16.7 0.0 1.8 1 1 1 2 2 2 1 FaeA-like protein GntR PF00392.21 gi|302349143|ref|YP_003816781.1| - 0.0046 16.6 0.1 0.0071 16.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|302349143|ref|YP_003816781.1| - 0.0058 16.8 0.0 0.0092 16.2 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|302349143|ref|YP_003816781.1| - 0.0062 16.3 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_45 PF14947.6 gi|302349143|ref|YP_003816781.1| - 0.007 16.3 0.0 0.0096 15.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MerR_1 PF13411.6 gi|302349143|ref|YP_003816781.1| - 0.0075 16.3 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein DUF2089 PF09862.9 gi|302349143|ref|YP_003816781.1| - 0.0098 15.9 0.0 0.013 15.6 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2089) HTH_38 PF13936.6 gi|302349143|ref|YP_003816781.1| - 0.017 14.9 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Dimerisation2 PF16864.5 gi|302349143|ref|YP_003816781.1| - 0.02 14.9 0.0 0.026 14.5 0.0 1.1 1 0 0 1 1 1 0 Dimerisation domain HTH_30 PF13556.6 gi|302349143|ref|YP_003816781.1| - 0.021 14.6 0.1 0.032 14.0 0.1 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|302349143|ref|YP_003816781.1| - 0.022 14.5 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|302349143|ref|YP_003816781.1| - 0.022 14.7 0.0 0.027 14.5 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|302349143|ref|YP_003816781.1| - 0.042 13.8 0.0 0.11 12.5 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|302349143|ref|YP_003816781.1| - 0.045 13.6 0.0 0.06 13.2 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF977 PF06163.11 gi|302349143|ref|YP_003816781.1| - 0.049 13.6 0.1 0.08 12.9 0.0 1.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DprA_WH PF17782.1 gi|302349143|ref|YP_003816781.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain HTH_12 PF08461.10 gi|302349143|ref|YP_003816781.1| - 0.1 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_Tnp_ISL3 PF13542.6 gi|302349143|ref|YP_003816781.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_40 PF14493.6 gi|302349143|ref|YP_003816781.1| - 0.15 12.5 0.0 0.18 12.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4350 PF14258.6 gi|302349145|ref|YP_003816783.1| - 0.00035 20.9 0.4 0.0016 18.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) DUF4129 PF13559.6 gi|302349146|ref|YP_003816784.1| - 0.00015 22.0 1.6 0.00015 21.9 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Yip1 PF04893.17 gi|302349147|ref|YP_003816785.1| - 0.66 9.7 8.4 1.1 8.9 8.4 1.4 1 1 0 1 1 1 0 Yip1 domain GGDEF_2 PF17853.1 gi|302349148|ref|YP_003816786.1| - 0.015 15.5 0.2 0.049 13.9 0.0 1.8 1 1 1 2 2 2 0 GGDEF-like domain DUF1616 PF07760.11 gi|302349149|ref|YP_003816787.1| - 4.2e-14 52.6 6.6 5.5e-14 52.2 6.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) UIM PF02809.20 gi|302349149|ref|YP_003816787.1| - 3.5 7.8 5.5 10 6.3 1.5 2.8 2 0 0 2 2 2 0 Ubiquitin interaction motif Thioredoxin_2 PF13098.6 gi|302349150|ref|YP_003816788.1| - 0.075 13.5 0.0 13 6.3 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin-like domain Toprim_4 PF13662.6 gi|302349151|ref|YP_003816789.1| - 3.7e-09 36.9 0.2 1.6e-08 34.9 0.2 2.2 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.22 gi|302349151|ref|YP_003816789.1| - 0.00012 22.2 0.4 0.00049 20.3 0.1 2.3 2 1 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|302349151|ref|YP_003816789.1| - 0.00015 22.1 0.0 0.00044 20.6 0.0 1.9 1 0 0 1 1 1 1 Toprim-like PBSX_XtrA PF17356.2 gi|302349151|ref|YP_003816789.1| - 0.0019 18.1 2.8 0.55 10.2 0.1 3.4 3 1 1 4 4 4 2 Phage-like element PBSX protein XtrA DUF4982 PF16355.5 gi|302349151|ref|YP_003816789.1| - 0.098 12.6 0.1 13 5.9 0.0 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF4982) TFIIA PF03153.13 gi|302349151|ref|YP_003816789.1| - 0.28 11.1 14.3 0.43 10.5 14.3 1.3 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Pex14_N PF04695.13 gi|302349151|ref|YP_003816789.1| - 0.53 10.9 12.2 1.1 9.9 12.2 1.5 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Suf PF05843.14 gi|302349151|ref|YP_003816789.1| - 0.54 10.2 4.4 0.89 9.5 4.4 1.3 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) DNA_pol_B PF00136.21 gi|302349152|ref|YP_003816790.1| - 4.4e-70 236.7 0.0 6.7e-70 236.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|302349152|ref|YP_003816790.1| - 3.5e-41 141.5 0.0 8.7e-39 133.6 0.0 2.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|302349152|ref|YP_003816790.1| - 5e-12 46.1 0.0 1e-11 45.1 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|302349152|ref|YP_003816790.1| - 7.6e-10 38.8 0.0 1.3e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|302349152|ref|YP_003816790.1| - 0.0018 17.2 0.0 0.003 16.5 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase type B, organellar and viral HHH_4 PF14490.6 gi|302349152|ref|YP_003816790.1| - 0.16 11.9 0.0 0.42 10.6 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain Nramp PF01566.18 gi|302349153|ref|YP_003816791.1| - 7.1e-45 153.5 20.9 9e-45 153.2 20.9 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Thymidylate_kin PF02223.17 gi|302349154|ref|YP_003816792.1| - 5.9e-42 143.4 0.0 7e-42 143.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|302349154|ref|YP_003816792.1| - 0.00047 20.1 0.0 0.0083 16.0 0.0 2.2 3 0 0 3 3 3 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|302349154|ref|YP_003816792.1| - 0.0049 17.4 0.0 0.04 14.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain Glyco_trans_4_4 PF13579.6 gi|302349154|ref|YP_003816792.1| - 0.32 11.4 4.3 0.32 11.4 0.9 2.2 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain Phage_holin_3_6 PF07332.11 gi|302349155|ref|YP_003816793.1| - 0.0014 18.6 0.3 0.0018 18.3 0.3 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III MitoNEET_N PF10660.9 gi|302349155|ref|YP_003816793.1| - 0.014 15.4 0.1 0.021 14.8 0.1 1.2 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus PIG-P PF08510.12 gi|302349155|ref|YP_003816793.1| - 0.025 14.5 1.1 0.78 9.7 1.1 2.0 1 1 0 1 1 1 0 PIG-P SAYSvFN PF10260.9 gi|302349155|ref|YP_003816793.1| - 0.14 12.1 0.9 3.1 7.8 0.3 2.2 2 0 0 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) Thioredoxin_2 PF13098.6 gi|302349156|ref|YP_003816794.1| - 0.00028 21.3 0.4 0.015 15.8 0.4 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|302349156|ref|YP_003816794.1| - 0.027 14.7 0.0 0.048 13.8 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin DUF2897 PF11446.8 gi|302349156|ref|YP_003816794.1| - 0.16 11.9 0.2 0.28 11.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2897) DUF2749 PF10907.8 gi|302349156|ref|YP_003816794.1| - 0.16 12.1 1.8 0.31 11.2 1.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) NAD_binding_2 PF03446.15 gi|302349158|ref|YP_003816796.1| - 1.9e-26 93.1 0.8 3.9e-26 92.1 0.8 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|302349158|ref|YP_003816796.1| - 1.8e-18 66.9 0.6 3.9e-18 65.9 0.6 1.6 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|302349158|ref|YP_003816796.1| - 4.9e-10 39.9 0.5 5.9e-08 33.2 0.1 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|302349158|ref|YP_003816796.1| - 7.2e-08 32.5 0.1 1.4e-07 31.6 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|302349158|ref|YP_003816796.1| - 8.3e-08 32.4 0.0 2.5e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|302349158|ref|YP_003816796.1| - 9.1e-07 29.2 0.0 1.7e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|302349158|ref|YP_003816796.1| - 2.7e-06 27.4 0.1 6.7e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|302349158|ref|YP_003816796.1| - 4.4e-06 26.4 0.0 8e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.6 gi|302349158|ref|YP_003816796.1| - 7.4e-05 22.9 0.1 7.4e-05 22.9 0.1 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain IlvN PF07991.12 gi|302349158|ref|YP_003816796.1| - 0.00013 21.6 0.2 0.00048 19.7 0.1 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|302349158|ref|YP_003816796.1| - 0.00025 20.4 0.0 0.00043 19.7 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|302349158|ref|YP_003816796.1| - 0.00083 19.0 0.0 0.0045 16.6 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|302349158|ref|YP_003816796.1| - 0.0013 18.4 0.6 0.0036 16.9 0.1 1.7 1 1 1 2 2 2 1 FAD dependent oxidoreductase adh_short PF00106.25 gi|302349158|ref|YP_003816796.1| - 0.0025 17.3 0.0 0.0041 16.6 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase FAD_binding_3 PF01494.19 gi|302349158|ref|YP_003816796.1| - 0.0033 16.7 0.3 0.0055 16.0 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain TrkA_N PF02254.18 gi|302349158|ref|YP_003816796.1| - 0.0035 17.6 0.2 0.2 11.9 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain GFO_IDH_MocA PF01408.22 gi|302349158|ref|YP_003816796.1| - 0.0069 17.2 0.0 0.014 16.2 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold OCD_Mu_crystall PF02423.15 gi|302349158|ref|YP_003816796.1| - 0.0076 15.2 0.1 0.012 14.5 0.1 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family XdhC_C PF13478.6 gi|302349158|ref|YP_003816796.1| - 0.026 15.0 0.1 0.077 13.5 0.0 1.9 2 1 1 3 3 2 0 XdhC Rossmann domain Ldh_1_N PF00056.23 gi|302349158|ref|YP_003816796.1| - 0.031 14.4 0.0 0.049 13.7 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|302349158|ref|YP_003816796.1| - 0.035 13.6 0.0 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family GIDA PF01134.22 gi|302349158|ref|YP_003816796.1| - 0.052 12.6 0.3 0.072 12.2 0.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|302349158|ref|YP_003816796.1| - 0.06 12.6 0.2 0.11 11.8 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|302349158|ref|YP_003816796.1| - 0.094 11.9 0.6 0.18 11.0 0.1 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NMD3 PF04981.13 gi|302349159|ref|YP_003816797.1| - 9.4e-36 123.5 0.0 1.1e-35 123.2 0.0 1.1 1 0 0 1 1 1 1 NMD3 family eIF-1a PF01176.19 gi|302349160|ref|YP_003816798.1| - 3.6e-16 58.7 0.0 4.6e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.22 gi|302349161|ref|YP_003816799.1| - 9.5e-57 191.6 0.0 1.5e-56 191.0 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|302349161|ref|YP_003816799.1| - 9.3e-06 25.7 0.3 0.03 14.2 0.2 2.6 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|302349161|ref|YP_003816799.1| - 0.0039 16.0 0.1 0.0055 15.5 0.1 1.2 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 gi|302349161|ref|YP_003816799.1| - 0.12 11.7 0.0 1.1 8.6 0.0 2.1 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family KH_1 PF00013.29 gi|302349162|ref|YP_003816800.1| - 0.00019 21.2 7.4 0.0027 17.5 3.1 2.9 2 1 1 3 3 3 2 KH domain IlvN PF07991.12 gi|302349163|ref|YP_003816801.1| - 6.7e-54 181.9 0.1 9.4e-54 181.4 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|302349163|ref|YP_003816801.1| - 1.2e-18 67.8 0.0 1.7e-18 67.3 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|302349163|ref|YP_003816801.1| - 1.4e-08 34.3 0.0 2.5e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|302349163|ref|YP_003816801.1| - 7.1e-08 32.7 0.0 1.2e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|302349163|ref|YP_003816801.1| - 1.8e-06 28.5 0.0 3.8e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|302349163|ref|YP_003816801.1| - 8.1e-06 26.1 0.0 1.3e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|302349163|ref|YP_003816801.1| - 0.0038 17.2 0.1 0.85 9.6 0.0 2.3 1 1 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Peptidase_S66 PF02016.15 gi|302349163|ref|YP_003816801.1| - 0.1 12.7 0.0 0.57 10.3 0.0 2.0 2 0 0 2 2 2 0 LD-carboxypeptidase N-terminal domain PDH PF02153.17 gi|302349163|ref|YP_003816801.1| - 0.21 10.6 0.0 0.3 10.0 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase CLP1_P PF16575.5 gi|302349164|ref|YP_003816802.1| - 2e-19 70.1 0.0 2.9e-19 69.6 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop RsgA_GTPase PF03193.16 gi|302349164|ref|YP_003816802.1| - 0.0091 15.9 0.0 0.021 14.7 0.0 1.5 1 1 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 gi|302349164|ref|YP_003816802.1| - 0.022 15.3 0.0 0.036 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|302349164|ref|YP_003816802.1| - 0.047 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRPRB PF09439.10 gi|302349164|ref|YP_003816802.1| - 0.059 12.8 0.0 0.087 12.2 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MMR_HSR1 PF01926.23 gi|302349164|ref|YP_003816802.1| - 0.06 13.4 0.2 0.24 11.5 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|302349164|ref|YP_003816802.1| - 0.075 12.8 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|302349164|ref|YP_003816802.1| - 0.11 13.0 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_22 PF13401.6 gi|302349164|ref|YP_003816802.1| - 0.15 12.3 0.0 0.25 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|302349164|ref|YP_003816802.1| - 0.17 12.0 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Glyco_hydro_38N PF01074.22 gi|302349165|ref|YP_003816803.1| - 2.1e-66 224.2 0.0 3.1e-66 223.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|302349165|ref|YP_003816803.1| - 1.1e-44 153.1 0.0 1.5e-44 152.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|302349165|ref|YP_003816803.1| - 2.6e-20 72.4 0.6 5.1e-20 71.4 0.6 1.5 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|302349165|ref|YP_003816803.1| - 2.1e-08 34.2 0.0 4.4e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Glyco_hydro_57 PF03065.15 gi|302349165|ref|YP_003816803.1| - 0.00029 20.1 0.0 0.00062 19.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1464 PF07318.12 gi|302349166|ref|YP_003816804.1| - 0.03 13.5 0.0 0.036 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1464) UbiD PF01977.16 gi|302349167|ref|YP_003816805.1| - 1.2e-80 271.4 0.1 1.5e-80 271.1 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF3208 PF11482.8 gi|302349167|ref|YP_003816805.1| - 0.14 12.5 0.0 0.28 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3208) DUF4911 PF16256.5 gi|302349167|ref|YP_003816805.1| - 0.17 11.9 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4911) tRNA-synt_1b PF00579.25 gi|302349168|ref|YP_003816806.1| - 7.7e-46 156.7 0.0 6.4e-44 150.4 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Pyr_redox_2 PF07992.14 gi|302349169|ref|YP_003816807.1| - 7.8e-54 182.9 0.1 1.1e-53 182.5 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|302349169|ref|YP_003816807.1| - 1.5e-22 79.9 0.1 1.4e-21 76.9 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|302349169|ref|YP_003816807.1| - 7.5e-20 71.3 0.9 1.3e-18 67.4 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|302349169|ref|YP_003816807.1| - 4.1e-11 42.6 0.8 0.0038 16.4 0.0 3.1 3 0 0 3 3 3 3 Glucose inhibited division protein A DAO PF01266.24 gi|302349169|ref|YP_003816807.1| - 4.2e-08 33.2 5.8 0.038 13.6 0.6 3.3 3 0 0 3 3 3 3 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|302349169|ref|YP_003816807.1| - 1.6e-07 31.1 4.0 0.00021 20.8 0.1 3.1 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|302349169|ref|YP_003816807.1| - 3.6e-07 29.8 4.9 6.8e-05 22.3 1.3 2.4 2 1 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.6 gi|302349169|ref|YP_003816807.1| - 6.8e-07 28.8 0.0 0.00011 21.6 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|302349169|ref|YP_003816807.1| - 5.5e-06 26.5 4.7 0.019 15.2 0.1 3.0 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|302349169|ref|YP_003816807.1| - 2.3e-05 23.3 4.5 0.18 10.5 0.1 3.1 2 1 1 3 3 3 2 HI0933-like protein Thi4 PF01946.17 gi|302349169|ref|YP_003816807.1| - 6.1e-05 22.4 0.1 0.14 11.3 0.0 2.2 2 0 0 2 2 2 2 Thi4 family 3HCDH_N PF02737.18 gi|302349169|ref|YP_003816807.1| - 6.2e-05 23.0 0.3 0.0019 18.1 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|302349169|ref|YP_003816807.1| - 0.00011 21.5 0.0 0.00074 18.8 0.0 1.9 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|302349169|ref|YP_003816807.1| - 0.0026 16.9 0.2 0.0026 16.9 0.2 3.7 3 1 1 4 4 4 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|302349169|ref|YP_003816807.1| - 0.0039 16.8 0.3 0.012 15.2 0.1 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amino_oxidase PF01593.24 gi|302349169|ref|YP_003816807.1| - 0.004 16.5 6.8 0.077 12.3 0.0 3.4 4 0 0 4 4 4 1 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 gi|302349169|ref|YP_003816807.1| - 0.0053 16.1 0.5 0.02 14.2 0.0 2.0 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|302349169|ref|YP_003816807.1| - 0.007 16.8 0.6 0.18 12.3 0.1 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|302349169|ref|YP_003816807.1| - 0.007 15.5 0.6 2.3 7.1 0.1 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein 2-Hacid_dh_C PF02826.19 gi|302349169|ref|YP_003816807.1| - 0.021 14.2 0.0 0.053 12.9 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|302349169|ref|YP_003816807.1| - 0.08 12.3 0.7 0.45 9.8 0.0 2.0 2 0 0 2 2 2 0 ThiF family XdhC_C PF13478.6 gi|302349169|ref|YP_003816807.1| - 0.14 12.7 0.1 2.9 8.4 0.0 2.6 2 0 0 2 2 2 0 XdhC Rossmann domain Trp_halogenase PF04820.14 gi|302349169|ref|YP_003816807.1| - 0.21 10.4 4.7 0.54 9.1 0.4 2.6 3 0 0 3 3 3 0 Tryptophan halogenase UPF0102 PF02021.17 gi|302349170|ref|YP_003816808.1| - 0.00021 21.5 0.1 0.00043 20.5 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HTH_1 PF00126.27 gi|302349170|ref|YP_003816808.1| - 0.0004 20.3 0.5 0.0013 18.6 0.5 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Hjc PF01870.18 gi|302349170|ref|YP_003816808.1| - 0.052 13.5 0.1 0.71 9.9 0.1 2.5 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) PDDEXK_5 PF11645.8 gi|302349170|ref|YP_003816808.1| - 0.061 13.3 0.0 0.084 12.8 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK endonuclease ATPgrasp_N PF18130.1 gi|302349170|ref|YP_003816808.1| - 0.1 13.2 0.6 0.62 10.6 0.2 2.5 2 1 0 2 2 2 0 ATP-grasp N-terminal domain DNA_photolyase PF00875.18 gi|302349170|ref|YP_003816808.1| - 0.11 12.5 0.1 1 9.4 0.0 2.2 2 1 1 3 3 3 0 DNA photolyase LpxK PF02606.14 gi|302349170|ref|YP_003816808.1| - 0.22 10.6 1.5 8.3 5.4 0.1 2.7 1 1 2 3 3 3 0 Tetraacyldisaccharide-1-P 4'-kinase ABC_tran PF00005.27 gi|302349171|ref|YP_003816809.1| - 8.4e-27 94.4 0.0 1.2e-26 93.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302349171|ref|YP_003816809.1| - 9.4e-18 65.1 0.3 4e-09 36.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|302349171|ref|YP_003816809.1| - 1.9e-06 27.5 0.0 3.6e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|302349171|ref|YP_003816809.1| - 4.3e-05 23.4 0.0 0.0015 18.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|302349171|ref|YP_003816809.1| - 8e-05 22.2 0.0 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|302349171|ref|YP_003816809.1| - 0.00046 20.8 0.0 0.00062 20.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|302349171|ref|YP_003816809.1| - 0.00061 20.2 0.1 0.0013 19.2 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|302349171|ref|YP_003816809.1| - 0.00064 19.4 0.0 0.00099 18.8 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Arm-DNA-bind_3 PF13356.6 gi|302349171|ref|YP_003816809.1| - 0.0028 18.0 0.1 0.01 16.2 0.1 2.0 1 0 0 1 1 1 1 Arm DNA-binding domain AAA_5 PF07728.14 gi|302349171|ref|YP_003816809.1| - 0.005 16.8 0.0 0.0091 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|302349171|ref|YP_003816809.1| - 0.0095 16.1 0.0 0.036 14.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|302349171|ref|YP_003816809.1| - 0.012 15.9 0.0 0.029 14.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|302349171|ref|YP_003816809.1| - 0.014 14.8 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|302349171|ref|YP_003816809.1| - 0.015 15.7 0.0 0.031 14.7 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|302349171|ref|YP_003816809.1| - 0.015 15.8 0.1 0.033 14.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|302349171|ref|YP_003816809.1| - 0.018 14.8 0.1 0.04 13.6 0.1 1.6 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|302349171|ref|YP_003816809.1| - 0.018 14.0 0.1 0.027 13.5 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Rad17 PF03215.15 gi|302349171|ref|YP_003816809.1| - 0.019 14.9 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 gi|302349171|ref|YP_003816809.1| - 0.028 14.4 0.1 0.062 13.2 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|302349171|ref|YP_003816809.1| - 0.03 14.0 0.1 0.062 13.0 0.0 1.5 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|302349171|ref|YP_003816809.1| - 0.039 13.7 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|302349171|ref|YP_003816809.1| - 0.039 13.5 0.1 0.086 12.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|302349171|ref|YP_003816809.1| - 0.041 14.1 0.1 0.094 13.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|302349171|ref|YP_003816809.1| - 0.11 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 gi|302349171|ref|YP_003816809.1| - 0.12 12.4 0.0 0.38 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|302349171|ref|YP_003816809.1| - 0.12 12.3 0.0 0.36 10.7 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|302349171|ref|YP_003816809.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|302349171|ref|YP_003816809.1| - 0.15 11.7 0.4 0.22 11.1 0.4 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|302349171|ref|YP_003816809.1| - 0.17 11.7 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase APS_kinase PF01583.20 gi|302349171|ref|YP_003816809.1| - 0.18 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.6 gi|302349171|ref|YP_003816809.1| - 0.21 11.9 0.1 0.5 10.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|302349171|ref|YP_003816809.1| - 0.23 11.9 0.0 0.4 11.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC2_membrane PF01061.24 gi|302349172|ref|YP_003816810.1| - 2.4e-09 36.9 27.2 2.4e-09 36.9 27.2 1.8 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|302349172|ref|YP_003816810.1| - 0.0022 17.2 24.6 0.0022 17.2 24.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein Hydrolase_like PF13242.6 gi|302349173|ref|YP_003816811.1| - 1.3e-11 44.4 0.1 2.3e-11 43.6 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.6 gi|302349173|ref|YP_003816811.1| - 1.2e-10 41.7 0.0 1.5e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|302349173|ref|YP_003816811.1| - 9.8e-09 35.8 0.3 4.2e-08 33.7 0.3 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_31 PF13560.6 gi|302349173|ref|YP_003816811.1| - 0.002 18.4 4.0 0.45 10.9 0.0 3.5 4 0 0 4 4 4 2 Helix-turn-helix domain UDPG_MGDP_dh PF00984.19 gi|302349173|ref|YP_003816811.1| - 0.17 12.1 0.0 0.67 10.2 0.0 2.0 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain DUF99 PF01949.16 gi|302349175|ref|YP_003816813.1| - 5.7e-47 159.5 0.0 6.4e-47 159.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Glyco_hydro_3 PF00933.21 gi|302349176|ref|YP_003816814.1| - 1.1e-60 205.7 0.0 1.4e-60 205.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|302349176|ref|YP_003816814.1| - 1.6e-42 145.8 0.0 2.3e-42 145.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|302349176|ref|YP_003816814.1| - 1.2e-17 63.7 0.3 2.3e-17 62.8 0.3 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain ABC_tran PF00005.27 gi|302349179|ref|YP_003816817.1| - 3.1e-33 115.2 0.0 4.2e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|302349179|ref|YP_003816817.1| - 1.1e-16 61.1 0.0 2.2e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|302349179|ref|YP_003816817.1| - 7e-07 29.6 0.0 3.1e-06 27.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|302349179|ref|YP_003816817.1| - 5.7e-06 26.4 1.4 0.078 12.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|302349179|ref|YP_003816817.1| - 0.00026 20.7 0.0 0.00049 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|302349179|ref|YP_003816817.1| - 0.00032 21.1 0.0 0.00059 20.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|302349179|ref|YP_003816817.1| - 0.00047 19.7 0.1 0.4 10.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|302349179|ref|YP_003816817.1| - 0.0034 17.3 0.1 0.0075 16.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase TniB PF05621.11 gi|302349179|ref|YP_003816817.1| - 0.0041 16.5 0.1 0.53 9.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_30 PF13604.6 gi|302349179|ref|YP_003816817.1| - 0.013 15.2 0.0 0.13 11.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|302349179|ref|YP_003816817.1| - 0.018 14.3 0.0 0.29 10.3 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|302349179|ref|YP_003816817.1| - 0.048 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 gi|302349179|ref|YP_003816817.1| - 0.069 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 gi|302349179|ref|YP_003816817.1| - 0.079 13.4 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|302349179|ref|YP_003816817.1| - 0.086 12.9 0.2 0.34 11.0 0.1 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase ATPase PF06745.13 gi|302349179|ref|YP_003816817.1| - 0.1 12.0 0.1 4.7 6.5 0.0 2.2 2 0 0 2 2 2 0 KaiC ABC_ATPase PF09818.9 gi|302349179|ref|YP_003816817.1| - 0.12 11.2 0.3 2.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Roc PF08477.13 gi|302349179|ref|YP_003816817.1| - 0.16 12.2 0.2 0.43 10.8 0.2 1.8 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase DUF87 PF01935.17 gi|302349179|ref|YP_003816817.1| - 0.17 12.0 0.2 0.5 10.4 0.1 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_33 PF13671.6 gi|302349179|ref|YP_003816817.1| - 0.17 12.0 0.0 0.31 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|302349179|ref|YP_003816817.1| - 0.19 12.2 0.0 17 5.8 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|302349179|ref|YP_003816817.1| - 0.2 11.5 0.1 0.39 10.6 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|302349180|ref|YP_003816818.1| - 2.6e-22 79.8 0.0 3.5e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|302349180|ref|YP_003816818.1| - 9e-20 71.0 0.1 1.4e-19 70.3 0.1 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|302349180|ref|YP_003816818.1| - 0.0005 20.0 1.1 0.044 13.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|302349180|ref|YP_003816818.1| - 0.0038 17.2 0.1 0.0062 16.5 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|302349180|ref|YP_003816818.1| - 0.0055 17.0 0.2 0.033 14.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|302349180|ref|YP_003816818.1| - 0.0058 16.4 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|302349180|ref|YP_003816818.1| - 0.045 12.4 0.4 0.54 8.8 0.2 1.9 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|302349180|ref|YP_003816818.1| - 0.077 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|302349180|ref|YP_003816818.1| - 0.11 13.1 0.0 0.18 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|302349180|ref|YP_003816818.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_17 PF13207.6 gi|302349180|ref|YP_003816818.1| - 0.15 12.4 0.0 0.58 10.6 0.0 1.7 1 1 1 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|302349181|ref|YP_003816819.1| - 4.3e-17 62.5 21.3 4.3e-17 62.5 21.3 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|302349181|ref|YP_003816819.1| - 0.046 13.7 1.1 0.046 13.7 1.1 3.8 3 1 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|302349182|ref|YP_003816820.1| - 1.1e-31 110.0 17.6 1.1e-31 110.0 17.6 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|302349183|ref|YP_003816821.1| - 1.2e-42 146.2 11.3 1.2e-42 146.2 11.3 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Mucin PF01456.17 gi|302349183|ref|YP_003816821.1| - 0.019 15.0 45.4 0.039 13.9 45.4 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein MGC-24 PF05283.11 gi|302349183|ref|YP_003816821.1| - 0.023 15.1 18.7 0.043 14.3 18.7 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin RIFIN PF02009.16 gi|302349183|ref|YP_003816821.1| - 0.11 12.4 4.4 0.16 11.9 4.4 1.2 1 0 0 1 1 1 0 Rifin TMEM154 PF15102.6 gi|302349183|ref|YP_003816821.1| - 0.28 11.1 13.6 0.51 10.2 13.6 1.4 1 0 0 1 1 1 0 TMEM154 protein family Med3 PF11593.8 gi|302349183|ref|YP_003816821.1| - 0.38 9.9 19.7 0.55 9.4 19.7 1.2 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal DUF5305 PF17231.2 gi|302349183|ref|YP_003816821.1| - 0.93 8.8 14.9 1.8 7.9 14.9 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5305) AJAP1_PANP_C PF15298.6 gi|302349183|ref|YP_003816821.1| - 1.7 8.8 29.5 3 8.0 29.5 1.3 1 0 0 1 1 1 0 AJAP1/PANP C-terminus Glyco_hydro_12 PF01670.16 gi|302349184|ref|YP_003816822.1| - 2.2e-17 63.8 1.3 3.6e-17 63.1 1.3 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 PGK PF00162.19 gi|302349185|ref|YP_003816823.1| - 1.6e-99 333.4 0.0 1.9e-99 333.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Usp PF00582.26 gi|302349186|ref|YP_003816824.1| - 7.7e-19 68.6 0.3 3.5e-17 63.2 0.3 2.0 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|302349186|ref|YP_003816824.1| - 0.00049 20.0 0.2 0.00068 19.6 0.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain SRP54 PF00448.22 gi|302349186|ref|YP_003816824.1| - 0.027 14.1 0.0 0.032 13.9 0.0 1.0 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MFS_1 PF07690.16 gi|302349187|ref|YP_003816825.1| - 3.1e-18 65.8 57.0 5.2e-18 65.1 57.0 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|302349187|ref|YP_003816825.1| - 2.8e-08 33.1 13.9 2.8e-08 33.1 13.9 2.5 1 1 0 2 2 2 2 Sugar (and other) transporter Glyco_hydro_1 PF00232.18 gi|302349188|ref|YP_003816826.1| - 2.1e-65 220.9 1.4 5.9e-54 183.2 0.0 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 DUF1611_N PF17396.2 gi|302349188|ref|YP_003816826.1| - 0.087 13.1 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain UbiA PF01040.18 gi|302349189|ref|YP_003816827.1| - 9e-25 87.4 24.2 9e-25 87.4 24.2 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family UbiD PF01977.16 gi|302349190|ref|YP_003816828.1| - 1e-126 423.1 0.0 1.1e-126 422.9 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ABC_tran PF00005.27 gi|302349191|ref|YP_003816829.1| - 4.9e-26 91.9 0.0 9.4e-26 91.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302349191|ref|YP_003816829.1| - 3.3e-17 63.3 0.1 4.7e-09 36.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|302349191|ref|YP_003816829.1| - 1.6e-05 25.3 0.0 2.5e-05 24.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|302349191|ref|YP_003816829.1| - 0.00014 21.4 0.0 0.45 9.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|302349191|ref|YP_003816829.1| - 0.00051 19.9 0.0 0.093 12.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|302349191|ref|YP_003816829.1| - 0.0032 17.9 0.0 0.01 16.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|302349191|ref|YP_003816829.1| - 0.0043 16.8 0.4 0.013 15.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|302349191|ref|YP_003816829.1| - 0.007 16.3 0.4 0.5 10.3 0.1 2.2 2 0 0 2 2 2 1 NTPase AAA_33 PF13671.6 gi|302349191|ref|YP_003816829.1| - 0.0074 16.5 0.1 0.65 10.2 0.0 2.9 2 1 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|302349191|ref|YP_003816829.1| - 0.014 15.3 0.0 0.083 12.8 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_29 PF13555.6 gi|302349191|ref|YP_003816829.1| - 0.014 15.1 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|302349191|ref|YP_003816829.1| - 0.015 15.9 0.0 0.023 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|302349191|ref|YP_003816829.1| - 0.02 14.5 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|302349191|ref|YP_003816829.1| - 0.022 14.5 0.0 0.85 9.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|302349191|ref|YP_003816829.1| - 0.029 14.3 0.1 0.27 11.1 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|302349191|ref|YP_003816829.1| - 0.035 14.0 0.1 0.075 12.9 0.0 1.5 2 0 0 2 2 1 0 RsgA GTPase AAA_22 PF13401.6 gi|302349191|ref|YP_003816829.1| - 0.037 14.3 0.1 0.092 13.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|302349191|ref|YP_003816829.1| - 0.054 12.3 0.9 6.5 5.4 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 gi|302349191|ref|YP_003816829.1| - 0.055 13.0 0.0 0.16 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|302349191|ref|YP_003816829.1| - 0.059 12.4 0.0 0.12 11.4 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein Stomoxyn PF11585.8 gi|302349191|ref|YP_003816829.1| - 0.07 13.2 0.8 0.13 12.3 0.8 1.4 1 0 0 1 1 1 0 Insect antimicrobial peptide, stomoxyn DUF3584 PF12128.8 gi|302349191|ref|YP_003816829.1| - 0.12 9.8 0.0 0.16 9.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_5 PF07728.14 gi|302349191|ref|YP_003816829.1| - 0.17 11.9 0.3 1.1 9.2 0.0 2.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|302349191|ref|YP_003816829.1| - 0.18 11.7 0.0 0.55 10.1 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain BPD_transp_1 PF00528.22 gi|302349192|ref|YP_003816830.1| - 0.00033 20.4 8.8 0.00033 20.4 8.8 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2177 PF09945.9 gi|302349192|ref|YP_003816830.1| - 0.001 19.2 2.9 0.83 9.8 0.3 2.5 2 0 0 2 2 2 2 Predicted membrane protein (DUF2177) DUF3094 PF11293.8 gi|302349192|ref|YP_003816830.1| - 0.042 13.6 5.7 0.11 12.2 0.5 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) Phosphonate-bd PF12974.7 gi|302349193|ref|YP_003816831.1| - 3.3e-06 26.9 0.2 5.2e-06 26.2 0.2 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|302349193|ref|YP_003816831.1| - 4.2e-05 23.1 0.0 0.00062 19.3 0.0 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 gi|302349193|ref|YP_003816831.1| - 0.00027 20.9 0.0 0.0011 19.0 0.0 2.0 1 1 0 1 1 1 1 NMT1/THI5 like Complex1_51K PF01512.17 gi|302349194|ref|YP_003816832.1| - 1.5e-45 154.8 0.0 3.2e-45 153.7 0.0 1.6 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|302349194|ref|YP_003816832.1| - 2.2e-18 66.1 0.2 3.7e-18 65.4 0.2 1.3 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 gi|302349194|ref|YP_003816832.1| - 0.0018 18.1 0.1 0.0057 16.5 0.1 1.9 1 0 0 1 1 1 1 SLBB domain Molybdopterin PF00384.22 gi|302349195|ref|YP_003816833.1| - 5.4e-84 282.6 0.0 6.5e-84 282.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|302349195|ref|YP_003816833.1| - 2.5e-27 95.1 1.0 8.4e-27 93.4 0.1 2.2 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|302349195|ref|YP_003816833.1| - 1.2e-20 73.3 1.1 1.2e-20 73.3 1.1 2.4 3 0 0 3 3 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.6 gi|302349195|ref|YP_003816833.1| - 9.2e-17 60.9 0.1 2.2e-16 59.6 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.27 gi|302349195|ref|YP_003816833.1| - 7e-08 32.3 0.3 2.3e-07 30.6 0.3 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_21 PF14697.6 gi|302349195|ref|YP_003816833.1| - 1.5e-07 31.4 9.2 4.3e-07 30.0 6.9 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|302349195|ref|YP_003816833.1| - 1.8e-07 31.6 10.7 2.5e-06 28.0 9.1 3.4 3 2 1 4 4 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|302349195|ref|YP_003816833.1| - 2.9e-07 30.3 24.1 3.2e-05 23.8 1.8 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.27 gi|302349195|ref|YP_003816833.1| - 4.4e-07 29.5 1.4 4.4e-07 29.5 1.4 3.5 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|302349195|ref|YP_003816833.1| - 7.9e-07 29.1 5.5 7.9e-07 29.1 5.5 2.9 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|302349195|ref|YP_003816833.1| - 1.4e-06 28.6 6.7 3.1e-06 27.5 4.9 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|302349195|ref|YP_003816833.1| - 3.7e-06 27.0 9.6 0.022 14.9 3.4 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|302349195|ref|YP_003816833.1| - 0.00069 20.5 0.5 0.00069 20.5 0.5 2.9 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|302349195|ref|YP_003816833.1| - 0.001 19.6 8.6 0.023 15.2 9.3 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|302349195|ref|YP_003816833.1| - 0.0086 16.1 3.6 0.0086 16.1 3.6 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|302349195|ref|YP_003816833.1| - 0.026 15.0 3.3 0.026 15.0 3.3 3.6 5 0 0 5 5 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|302349195|ref|YP_003816833.1| - 0.029 15.3 6.0 0.029 15.3 6.0 3.9 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|302349195|ref|YP_003816833.1| - 0.035 14.9 13.6 0.074 13.8 2.5 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer2_3 PF13085.6 gi|302349195|ref|YP_003816833.1| - 0.036 14.1 0.0 0.078 13.0 0.0 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_22 PF17179.4 gi|302349195|ref|YP_003816833.1| - 0.088 13.7 5.5 3.6 8.5 1.3 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|302349195|ref|YP_003816833.1| - 0.11 12.8 15.1 0.065 13.4 0.9 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|302349195|ref|YP_003816833.1| - 0.15 12.7 11.2 2.8 8.6 1.9 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I NTP_transf_3 PF12804.7 gi|302349196|ref|YP_003816834.1| - 1.3e-22 80.9 1.2 1.3e-22 80.9 1.2 1.7 2 0 0 2 2 2 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|302349196|ref|YP_003816834.1| - 0.0013 18.7 0.0 0.0029 17.6 0.0 1.5 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|302349196|ref|YP_003816834.1| - 0.0048 16.7 0.0 0.0067 16.2 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PGG PF13962.6 gi|302349197|ref|YP_003816835.1| - 0.03 14.1 0.2 0.03 14.1 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function Ost5 PF05251.12 gi|302349197|ref|YP_003816835.1| - 0.041 14.1 0.1 0.041 14.1 0.1 2.1 2 1 0 2 2 2 0 Oligosaccharyltransferase subunit 5 Pyr_redox_2 PF07992.14 gi|302349199|ref|YP_003816837.1| - 1.1e-49 169.3 0.3 1.5e-49 168.8 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|302349199|ref|YP_003816837.1| - 1.5e-20 73.5 8.0 8.8e-16 58.2 0.4 3.8 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|302349199|ref|YP_003816837.1| - 1.3e-14 54.4 0.6 5.1e-14 52.5 0.0 2.2 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|302349199|ref|YP_003816837.1| - 4.3e-11 42.6 0.0 8.4e-07 28.5 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|302349199|ref|YP_003816837.1| - 3.8e-09 36.6 9.2 0.00022 20.9 0.2 4.2 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|302349199|ref|YP_003816837.1| - 4.9e-07 29.9 0.6 0.00033 20.8 0.1 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|302349199|ref|YP_003816837.1| - 9e-07 28.3 0.2 7.2e-06 25.4 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 gi|302349199|ref|YP_003816837.1| - 0.00015 20.6 2.9 0.0035 16.1 0.1 3.4 4 0 0 4 4 4 1 HI0933-like protein GIDA PF01134.22 gi|302349199|ref|YP_003816837.1| - 0.00034 19.8 6.2 0.29 10.2 0.2 3.8 5 0 0 5 5 5 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|302349199|ref|YP_003816837.1| - 0.0018 17.4 6.8 0.0085 15.2 0.2 2.5 2 1 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|302349199|ref|YP_003816837.1| - 0.0021 17.4 7.0 0.17 11.2 0.1 2.7 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|302349199|ref|YP_003816837.1| - 0.0028 17.1 2.2 0.28 10.5 0.3 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|302349199|ref|YP_003816837.1| - 0.003 17.6 6.3 11 6.0 0.1 4.2 4 0 0 4 4 4 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|302349199|ref|YP_003816837.1| - 0.003 16.9 0.1 0.01 15.1 0.0 1.9 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.14 gi|302349199|ref|YP_003816837.1| - 0.035 13.0 5.5 0.058 12.2 0.1 2.8 3 0 0 3 3 3 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|302349199|ref|YP_003816837.1| - 0.04 13.0 3.9 1.4 7.9 0.1 2.9 2 1 1 3 3 3 0 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|302349199|ref|YP_003816837.1| - 0.048 14.1 1.1 3.1 8.3 0.2 2.8 1 1 1 2 2 2 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|302349199|ref|YP_003816837.1| - 0.14 11.4 2.4 6.9 5.8 0.0 2.4 2 0 0 2 2 2 0 FAD binding domain 3HCDH_N PF02737.18 gi|302349199|ref|YP_003816837.1| - 0.25 11.2 1.0 0.47 10.3 0.2 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF4129 PF13559.6 gi|302349199|ref|YP_003816837.1| - 0.25 11.7 5.4 7.1 7.0 0.4 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4129) ATPase PF06745.13 gi|302349200|ref|YP_003816838.1| - 4.2e-52 176.8 0.0 5.9e-52 176.3 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|302349200|ref|YP_003816838.1| - 1e-07 31.7 0.0 2.5e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|302349200|ref|YP_003816838.1| - 0.0001 21.1 0.0 0.02 13.5 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.15 gi|302349200|ref|YP_003816838.1| - 0.0002 20.8 0.0 0.00035 20.0 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|302349200|ref|YP_003816838.1| - 0.00045 20.6 0.0 0.00074 19.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|302349200|ref|YP_003816838.1| - 0.00074 19.3 0.0 0.0019 18.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|302349200|ref|YP_003816838.1| - 0.0022 18.5 0.0 0.014 16.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain ADP_PFK_GK PF04587.15 gi|302349200|ref|YP_003816838.1| - 0.0037 15.9 0.0 0.26 9.8 0.0 2.1 2 0 0 2 2 2 1 ADP-specific Phosphofructokinase/Glucokinase conserved region AAA_22 PF13401.6 gi|302349200|ref|YP_003816838.1| - 0.0059 16.9 0.0 0.022 15.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|302349200|ref|YP_003816838.1| - 0.0068 15.7 0.0 0.0093 15.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|302349200|ref|YP_003816838.1| - 0.0089 16.0 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Zeta_toxin PF06414.12 gi|302349200|ref|YP_003816838.1| - 0.01 15.2 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.6 gi|302349200|ref|YP_003816838.1| - 0.01 15.8 0.0 0.02 14.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|302349200|ref|YP_003816838.1| - 0.068 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|302349200|ref|YP_003816838.1| - 0.077 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|302349200|ref|YP_003816838.1| - 0.13 12.7 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RecA PF00154.21 gi|302349200|ref|YP_003816838.1| - 0.13 11.7 0.6 0.48 9.8 0.6 1.8 1 1 0 1 1 1 0 recA bacterial DNA recombination protein cobW PF02492.19 gi|302349200|ref|YP_003816838.1| - 0.17 11.4 0.0 0.34 10.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ArsA_ATPase PF02374.15 gi|302349200|ref|YP_003816838.1| - 0.28 10.3 0.0 0.46 9.6 0.0 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase Peptidase_M24 PF00557.24 gi|302349201|ref|YP_003816839.1| - 4.2e-39 134.4 0.0 6.9e-39 133.7 0.0 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|302349201|ref|YP_003816839.1| - 5.7e-10 40.0 0.0 1.4e-09 38.7 0.0 1.7 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain EMG1 PF03587.14 gi|302349202|ref|YP_003816840.1| - 2.7e-34 118.5 0.0 3.1e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Glyco_transf_4 PF13439.6 gi|302349202|ref|YP_003816840.1| - 0.081 12.9 0.1 0.28 11.2 0.0 1.9 2 1 1 3 3 3 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|302349202|ref|YP_003816840.1| - 0.18 12.3 2.5 0.43 11.0 0.5 2.3 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain Lactamase_B_2 PF12706.7 gi|302349203|ref|YP_003816841.1| - 3.1e-07 30.1 0.0 6.8e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|302349203|ref|YP_003816841.1| - 7.4e-05 22.8 1.3 0.0021 18.1 0.4 2.4 3 0 0 3 3 3 1 Metallo-beta-lactamase superfamily Amdase PF17645.1 gi|302349204|ref|YP_003816842.1| - 3.4e-12 46.4 0.0 4.8e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|302349204|ref|YP_003816842.1| - 0.002 18.0 0.0 0.004 17.0 0.0 1.4 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase Radical_SAM PF04055.21 gi|302349206|ref|YP_003816844.1| - 9.7e-17 61.8 0.1 4.4e-16 59.7 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|302349206|ref|YP_003816844.1| - 3.6e-07 30.5 0.0 5.4e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|302349206|ref|YP_003816844.1| - 0.00058 20.0 0.0 0.00096 19.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF5131 PF07505.11 gi|302349207|ref|YP_003816845.1| - 7e-18 65.0 0.0 1.2e-17 64.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF5131) GP88 PF17338.2 gi|302349207|ref|YP_003816845.1| - 0.00028 20.4 0.0 0.0018 17.7 0.0 2.0 2 0 0 2 2 2 1 Gene product 88 Radical_SAM PF04055.21 gi|302349207|ref|YP_003816845.1| - 0.02 15.3 0.0 0.038 14.3 0.0 1.5 1 1 0 1 1 1 0 Radical SAM superfamily HTH_20 PF12840.7 gi|302349208|ref|YP_003816846.1| - 4.2e-10 39.5 0.1 1.1e-09 38.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|302349208|ref|YP_003816846.1| - 0.002 17.9 0.0 0.02 14.7 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF1269 PF06897.12 gi|302349208|ref|YP_003816846.1| - 0.054 13.8 0.8 19 5.6 1.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) ABC_tran PF00005.27 gi|302349210|ref|YP_003816848.1| - 3.6e-29 102.0 0.0 5.8e-29 101.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302349210|ref|YP_003816848.1| - 1.6e-13 51.1 0.1 3.4e-09 36.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|302349210|ref|YP_003816848.1| - 0.00046 20.0 0.0 0.29 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|302349210|ref|YP_003816848.1| - 0.00049 20.5 0.1 0.0014 19.1 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|302349210|ref|YP_003816848.1| - 0.0015 18.0 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|302349210|ref|YP_003816848.1| - 0.0027 17.5 0.0 1.2 8.9 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|302349210|ref|YP_003816848.1| - 0.0033 17.6 0.0 0.01 16.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|302349210|ref|YP_003816848.1| - 0.0044 17.0 0.7 0.31 10.9 0.0 2.8 2 1 1 3 3 3 1 NTPase BCA_ABC_TP_C PF12399.8 gi|302349210|ref|YP_003816848.1| - 0.0047 16.8 0.1 0.013 15.4 0.1 1.8 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter MeaB PF03308.16 gi|302349210|ref|YP_003816848.1| - 0.0077 15.2 0.1 0.013 14.5 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|302349210|ref|YP_003816848.1| - 0.01 15.7 0.1 0.018 15.0 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|302349210|ref|YP_003816848.1| - 0.014 15.4 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|302349210|ref|YP_003816848.1| - 0.014 15.8 0.0 0.068 13.6 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|302349210|ref|YP_003816848.1| - 0.02 14.8 0.0 0.055 13.4 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|302349210|ref|YP_003816848.1| - 0.021 15.1 0.1 0.26 11.6 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|302349210|ref|YP_003816848.1| - 0.027 14.2 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain APS_kinase PF01583.20 gi|302349210|ref|YP_003816848.1| - 0.034 14.1 0.0 0.056 13.3 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_23 PF13476.6 gi|302349210|ref|YP_003816848.1| - 0.038 14.5 0.0 0.063 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|302349210|ref|YP_003816848.1| - 0.044 13.5 0.0 0.095 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|302349210|ref|YP_003816848.1| - 0.047 13.4 0.0 0.12 12.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|302349210|ref|YP_003816848.1| - 0.053 13.1 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|302349210|ref|YP_003816848.1| - 0.058 13.0 0.9 0.11 12.1 0.1 2.1 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|302349210|ref|YP_003816848.1| - 0.071 13.4 0.1 0.25 11.6 0.0 1.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|302349210|ref|YP_003816848.1| - 0.082 13.1 1.0 0.5 10.6 0.0 2.6 2 1 1 3 3 3 0 AAA domain ATP_bind_1 PF03029.17 gi|302349210|ref|YP_003816848.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 gi|302349210|ref|YP_003816848.1| - 0.16 11.9 0.3 1.1 9.3 0.1 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) MelC1 PF06236.11 gi|302349210|ref|YP_003816848.1| - 0.17 12.0 0.0 2.6 8.1 0.0 2.3 2 0 0 2 2 2 0 Tyrosinase co-factor MelC1 AAA_14 PF13173.6 gi|302349210|ref|YP_003816848.1| - 0.19 11.8 0.0 0.47 10.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain SRP54 PF00448.22 gi|302349210|ref|YP_003816848.1| - 0.22 11.1 0.0 0.39 10.3 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC2_membrane PF01061.24 gi|302349211|ref|YP_003816849.1| - 2.3e-12 46.8 22.7 2.3e-12 46.8 22.7 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|302349211|ref|YP_003816849.1| - 4.1e-05 22.8 16.9 4.1e-05 22.8 16.9 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein Glycos_transf_1 PF00534.20 gi|302349212|ref|YP_003816850.1| - 4.2e-19 68.7 0.0 6.8e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|302349212|ref|YP_003816850.1| - 1.2e-11 45.2 0.0 2.2e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|302349212|ref|YP_003816850.1| - 1.8e-07 31.3 1.1 8.3e-07 29.2 0.7 2.4 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|302349212|ref|YP_003816850.1| - 0.0003 21.1 0.0 0.0014 19.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|302349212|ref|YP_003816850.1| - 0.0016 18.9 7.1 0.0016 18.9 7.1 2.8 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain ALG11_N PF15924.5 gi|302349212|ref|YP_003816850.1| - 0.049 13.7 0.1 6.8 6.7 0.0 2.8 3 0 0 3 3 3 0 ALG11 mannosyltransferase N-terminus Glyco_hydro_12 PF01670.16 gi|302349213|ref|YP_003816851.1| - 5.4e-21 75.6 0.0 6.8e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 SBP_bac_5 PF00496.22 gi|302349214|ref|YP_003816852.1| - 2.9e-43 148.3 5.6 4.9e-43 147.5 5.6 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PKD PF00801.20 gi|302349214|ref|YP_003816852.1| - 4.4e-05 23.2 1.6 4.4e-05 23.2 1.6 3.9 4 1 0 4 4 4 1 PKD domain SWM_repeat PF13753.6 gi|302349214|ref|YP_003816852.1| - 0.0044 17.1 2.5 1 9.5 0.2 2.5 2 0 0 2 2 2 2 Putative flagellar system-associated repeat PNGaseA PF12222.8 gi|302349215|ref|YP_003816853.1| - 3e-33 115.4 1.1 1.8e-31 109.5 1.1 2.1 1 1 0 1 1 1 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A Glug PF07581.12 gi|302349215|ref|YP_003816853.1| - 3.9 8.1 7.0 2.3 8.8 0.6 3.4 3 0 0 3 3 3 0 The GLUG motif AA_permease_2 PF13520.6 gi|302349216|ref|YP_003816854.1| - 3.1e-19 69.1 48.8 4.2e-19 68.7 48.8 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|302349216|ref|YP_003816854.1| - 4.3e-15 55.3 42.9 6e-15 54.8 42.9 1.2 1 0 0 1 1 1 1 Amino acid permease MFS_1 PF07690.16 gi|302349217|ref|YP_003816855.1| - 9.9e-06 24.7 44.2 9.9e-06 24.7 44.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily B12D PF06522.11 gi|302349217|ref|YP_003816855.1| - 0.6 10.0 2.9 9.3 6.1 0.1 3.1 3 0 0 3 3 3 0 NADH-ubiquinone reductase complex 1 MLRQ subunit Pro-kuma_activ PF09286.11 gi|302349218|ref|YP_003816856.1| - 8.6e-19 68.2 0.0 3.2e-18 66.4 0.0 2.0 2 0 0 2 2 2 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|302349218|ref|YP_003816856.1| - 1.4e-05 24.5 0.9 2.8e-05 23.5 0.9 1.4 1 0 0 1 1 1 1 Subtilase family LPP PF04728.13 gi|302349218|ref|YP_003816856.1| - 0.0054 17.1 3.9 0.033 14.6 1.7 2.5 1 1 1 2 2 2 1 Lipoprotein leucine-zipper FlxA PF14282.6 gi|302349218|ref|YP_003816856.1| - 0.078 13.0 0.5 0.13 12.3 0.5 1.3 1 0 0 1 1 1 0 FlxA-like protein COG2 PF06148.11 gi|302349218|ref|YP_003816856.1| - 0.35 11.0 1.8 0.6 10.2 1.8 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.12 gi|302349218|ref|YP_003816856.1| - 1.5 8.9 6.0 2.9 7.9 6.0 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus SBP_bac_1 PF01547.25 gi|302349219|ref|YP_003816857.1| - 3.1e-15 56.9 1.0 3.1e-15 56.9 1.0 2.2 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|302349219|ref|YP_003816857.1| - 1.2e-12 48.3 5.0 6.1e-06 26.2 0.3 2.8 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein DUF4330 PF14221.6 gi|302349219|ref|YP_003816857.1| - 0.065 13.4 2.8 0.27 11.5 1.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4330) Pilin_N PF07790.11 gi|302349219|ref|YP_003816857.1| - 0.14 13.1 1.3 0.36 11.8 1.3 1.6 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal DUF2615 PF11027.8 gi|302349219|ref|YP_003816857.1| - 0.2 11.8 0.0 0.39 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2615) SBP_bac_1 PF01547.25 gi|302349220|ref|YP_003816858.1| - 9.2e-23 81.7 1.6 1.2e-22 81.3 0.3 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Aldedh PF00171.22 gi|302349221|ref|YP_003816859.1| - 6.7e-120 400.7 0.0 7.8e-120 400.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|302349221|ref|YP_003816859.1| - 5.6e-06 25.7 0.0 9.3e-06 24.9 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) NblA PF04485.12 gi|302349222|ref|YP_003816860.1| - 0.0029 18.0 5.8 0.24 11.8 0.1 2.9 2 1 1 3 3 3 2 Phycobilisome degradation protein nblA Catalase-rel PF06628.12 gi|302349222|ref|YP_003816860.1| - 0.022 14.9 0.2 0.17 12.1 0.1 2.1 1 1 1 2 2 2 0 Catalase-related immune-responsive DUF3420 PF11900.8 gi|302349222|ref|YP_003816860.1| - 0.068 13.3 0.2 0.12 12.5 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3420) NUDIX PF00293.28 gi|302349223|ref|YP_003816861.1| - 2.1e-16 60.2 0.6 2.9e-16 59.7 0.6 1.2 1 0 0 1 1 1 1 NUDIX domain Pyr_redox_2 PF07992.14 gi|302349224|ref|YP_003816862.1| - 1.4e-27 96.8 0.0 2.3e-27 96.0 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|302349224|ref|YP_003816862.1| - 1.2e-08 34.9 1.4 0.00015 21.5 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|302349224|ref|YP_003816862.1| - 3e-07 30.9 4.3 6.3e-05 23.5 0.5 3.6 2 2 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|302349224|ref|YP_003816862.1| - 4.8e-06 26.7 0.9 8.7e-06 25.9 0.2 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|302349224|ref|YP_003816862.1| - 0.00034 20.0 0.2 0.00095 18.5 0.0 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|302349224|ref|YP_003816862.1| - 0.00045 19.6 2.8 0.79 8.9 0.7 3.7 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|302349224|ref|YP_003816862.1| - 0.00046 20.1 0.2 0.0009 19.2 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|302349224|ref|YP_003816862.1| - 0.0013 18.9 1.1 1.2 9.1 0.0 2.5 3 0 0 3 3 2 2 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.14 gi|302349224|ref|YP_003816862.1| - 0.0027 16.5 0.5 0.0027 16.5 0.5 1.8 3 0 0 3 3 3 1 HI0933-like protein Amino_oxidase PF01593.24 gi|302349224|ref|YP_003816862.1| - 0.0065 15.8 0.1 3.9 6.6 0.0 2.9 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.19 gi|302349224|ref|YP_003816862.1| - 0.0088 15.3 0.6 0.015 14.6 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|302349224|ref|YP_003816862.1| - 0.0094 15.3 0.1 0.051 12.9 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDA PF01134.22 gi|302349224|ref|YP_003816862.1| - 0.014 14.5 0.4 0.26 10.3 0.2 2.3 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|302349224|ref|YP_003816862.1| - 0.05 12.7 0.6 0.05 12.7 0.6 2.4 4 0 0 4 4 4 0 FAD binding domain IlvN PF07991.12 gi|302349224|ref|YP_003816862.1| - 0.15 11.6 1.6 0.32 10.6 0.3 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain LcnG-beta PF11632.8 gi|302349224|ref|YP_003816862.1| - 0.16 11.9 0.1 0.37 10.8 0.1 1.6 1 0 0 1 1 1 0 Lactococcin G-beta Thi4 PF01946.17 gi|302349224|ref|YP_003816862.1| - 0.2 10.9 1.3 0.41 9.8 0.5 1.8 2 0 0 2 2 2 0 Thi4 family Glucokinase PF02685.16 gi|302349224|ref|YP_003816862.1| - 0.24 10.4 0.1 0.41 9.6 0.1 1.3 1 0 0 1 1 1 0 Glucokinase UDPG_MGDP_dh_N PF03721.14 gi|302349224|ref|YP_003816862.1| - 0.25 10.9 0.7 1.8 8.1 0.5 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|302349224|ref|YP_003816862.1| - 0.29 11.6 3.1 1.1 9.8 0.4 2.8 2 1 0 2 2 2 0 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|302349224|ref|YP_003816862.1| - 0.5 10.4 2.3 3.8 7.5 0.6 2.3 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TusA PF01206.17 gi|302349226|ref|YP_003816864.1| - 0.068 13.0 0.0 0.072 12.9 0.0 1.0 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF2283 PF10049.9 gi|302349226|ref|YP_003816864.1| - 0.074 13.3 0.0 0.079 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Methyltransf_11 PF08241.12 gi|302349227|ref|YP_003816865.1| - 2.4e-13 50.5 0.1 5.8e-13 49.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|302349227|ref|YP_003816865.1| - 4.1e-12 46.7 0.0 1.2e-11 45.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|302349227|ref|YP_003816865.1| - 1.1e-09 38.0 0.0 1.4e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|302349227|ref|YP_003816865.1| - 5e-08 33.0 0.0 6.8e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|302349227|ref|YP_003816865.1| - 4.4e-06 26.6 0.0 7.2e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|302349227|ref|YP_003816865.1| - 1.6e-05 25.5 0.0 2.9e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|302349227|ref|YP_003816865.1| - 0.035 13.7 0.0 0.052 13.2 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|302349227|ref|YP_003816865.1| - 0.078 12.5 0.0 0.13 11.8 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain vATP-synt_AC39 PF01992.16 gi|302349228|ref|YP_003816866.1| - 3.8e-10 39.8 0.0 8.4e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 ATP synthase (C/AC39) subunit ApoLp-III PF07464.11 gi|302349229|ref|YP_003816867.1| - 0.00033 20.8 4.9 0.0011 19.1 4.9 1.7 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) Tektin PF03148.14 gi|302349229|ref|YP_003816867.1| - 0.00039 19.3 1.5 0.00042 19.2 1.5 1.0 1 0 0 1 1 1 1 Tektin family Apolipoprotein PF01442.18 gi|302349229|ref|YP_003816867.1| - 0.0013 18.7 10.3 0.0016 18.3 10.3 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain FAM184 PF15665.5 gi|302349229|ref|YP_003816867.1| - 0.0033 17.2 7.4 0.0039 17.0 7.4 1.1 1 0 0 1 1 1 1 Family with sequence similarity 184, A and B HTH_16 PF12645.7 gi|302349229|ref|YP_003816867.1| - 0.0035 17.3 0.2 0.096 12.8 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain DUF1864 PF08933.11 gi|302349229|ref|YP_003816867.1| - 0.0094 14.7 1.6 0.033 12.9 0.5 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF1864) DUF2267 PF10025.9 gi|302349229|ref|YP_003816867.1| - 0.011 15.9 2.9 0.019 15.3 2.9 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) Mt_ATP-synt_B PF05405.14 gi|302349229|ref|YP_003816867.1| - 0.015 15.0 3.1 0.019 14.6 3.1 1.2 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) TetR_C_35 PF18556.1 gi|302349229|ref|YP_003816867.1| - 0.033 14.3 2.6 0.038 14.1 1.2 1.8 1 1 0 1 1 1 0 Bacterial Tetracyclin repressor, C-terminal domain RB_A PF01858.17 gi|302349229|ref|YP_003816867.1| - 0.096 12.5 0.5 0.12 12.2 0.5 1.1 1 0 0 1 1 1 0 Retinoblastoma-associated protein A domain OmpH PF03938.14 gi|302349229|ref|YP_003816867.1| - 0.12 12.8 7.1 0.15 12.4 7.1 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DNA_pol3_a_NII PF11490.8 gi|302349229|ref|YP_003816867.1| - 0.12 12.2 2.3 0.24 11.3 2.3 1.5 1 1 0 1 1 1 0 DNA polymerase III polC-type N-terminus II Fib_alpha PF08702.10 gi|302349229|ref|YP_003816867.1| - 0.13 12.5 1.5 0.24 11.6 1.4 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family RapA_C PF12137.8 gi|302349229|ref|YP_003816867.1| - 0.13 11.3 5.2 0.16 10.9 5.2 1.2 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal hDGE_amylase PF14701.6 gi|302349229|ref|YP_003816867.1| - 0.18 10.8 1.8 0.21 10.7 1.8 1.0 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain DUF3563 PF12086.8 gi|302349229|ref|YP_003816867.1| - 0.44 10.3 4.2 0.34 10.7 2.3 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3563) CorA PF01544.18 gi|302349229|ref|YP_003816867.1| - 0.49 9.7 2.8 0.56 9.5 2.8 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein FUSC PF04632.12 gi|302349229|ref|YP_003816867.1| - 0.52 8.8 5.3 0.62 8.5 5.3 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4404 PF14357.6 gi|302349229|ref|YP_003816867.1| - 0.55 10.9 8.4 2 9.1 3.8 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4404) DUF3235 PF11574.8 gi|302349229|ref|YP_003816867.1| - 0.83 10.5 7.8 1.6 9.7 1.2 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3235) GST_C_2 PF13410.6 gi|302349229|ref|YP_003816867.1| - 1.2 9.3 4.7 5.7 7.0 3.3 2.9 2 1 0 2 2 2 0 Glutathione S-transferase, C-terminal domain DUF883 PF05957.13 gi|302349229|ref|YP_003816867.1| - 1.7 9.3 12.1 5 7.8 8.5 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) T3SS_needle_E PF08988.10 gi|302349229|ref|YP_003816867.1| - 1.9 8.7 9.3 2.8 8.1 0.2 2.4 1 1 0 2 2 2 0 Type III secretion system, cytoplasmic E component of needle HSCB_C PF07743.13 gi|302349229|ref|YP_003816867.1| - 5.7 7.5 13.0 11 6.5 8.8 2.3 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain UPRTase PF14681.6 gi|302349230|ref|YP_003816868.1| - 1.8e-42 145.1 0.0 2.2e-42 144.8 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|302349230|ref|YP_003816868.1| - 5.6e-05 22.7 0.1 8.2e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain ECH_1 PF00378.20 gi|302349231|ref|YP_003816869.1| - 9.5e-35 120.1 0.1 1e-34 120.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|302349231|ref|YP_003816869.1| - 7.6e-18 65.1 0.1 8.8e-18 64.9 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase CoA_transf_3 PF02515.17 gi|302349233|ref|YP_003816871.1| - 1.7e-100 336.7 0.0 1.9e-100 336.5 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III HpcH_HpaI PF03328.14 gi|302349234|ref|YP_003816872.1| - 1.8e-37 128.7 0.2 1e-19 70.6 0.1 2.3 2 0 0 2 2 2 2 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|302349234|ref|YP_003816872.1| - 5.1e-15 55.5 0.0 3.1e-08 33.2 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold DUF4217 PF13959.6 gi|302349234|ref|YP_003816872.1| - 0.037 14.3 0.6 0.11 12.7 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4217) MFS_1 PF07690.16 gi|302349235|ref|YP_003816873.1| - 9.5e-25 87.3 47.6 9.5e-25 87.3 47.6 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|302349235|ref|YP_003816873.1| - 4.7e-18 65.3 34.9 1.8e-17 63.3 9.2 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter GHMP_kinases_C PF08544.13 gi|302349236|ref|YP_003816874.1| - 3.5e-18 65.7 0.9 7.5e-18 64.7 0.4 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|302349236|ref|YP_003816874.1| - 4.5e-15 55.6 5.8 1.4e-14 54.1 5.8 1.9 1 0 0 1 1 1 1 GHMP kinases N terminal domain GCD14 PF08704.10 gi|302349237|ref|YP_003816875.1| - 2e-27 96.4 0.0 4.9e-27 95.2 0.0 1.6 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|302349237|ref|YP_003816875.1| - 1.9e-08 34.3 0.0 2.9e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|302349237|ref|YP_003816875.1| - 1.1e-06 28.6 0.0 1.4e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|302349237|ref|YP_003816875.1| - 2.9e-05 24.7 0.0 5.2e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|302349237|ref|YP_003816875.1| - 0.0014 19.7 0.0 0.0028 18.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|302349237|ref|YP_003816875.1| - 0.0023 18.5 0.0 0.0043 17.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|302349237|ref|YP_003816875.1| - 0.0038 16.3 0.0 0.0052 15.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|302349237|ref|YP_003816875.1| - 0.0065 16.0 0.0 0.0091 15.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.17 gi|302349237|ref|YP_003816875.1| - 0.012 14.8 0.0 0.016 14.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_16 PF10294.9 gi|302349237|ref|YP_003816875.1| - 0.02 14.6 0.0 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Ubie_methyltran PF01209.18 gi|302349237|ref|YP_003816875.1| - 0.03 13.7 0.0 0.056 12.8 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|302349237|ref|YP_003816875.1| - 0.042 13.7 0.0 0.096 12.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Fer2_3 PF13085.6 gi|302349238|ref|YP_003816876.1| - 1.3e-37 128.2 0.1 2.4e-37 127.3 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|302349238|ref|YP_003816876.1| - 1.5e-07 31.7 3.2 1.5e-07 31.7 3.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|302349238|ref|YP_003816876.1| - 1.2e-06 28.6 2.7 1.2e-06 28.6 2.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|302349238|ref|YP_003816876.1| - 2.3e-06 27.4 0.2 2.3e-06 27.4 0.2 2.1 3 0 0 3 3 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 gi|302349238|ref|YP_003816876.1| - 2.6e-06 27.9 2.4 2.6e-06 27.9 2.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|302349238|ref|YP_003816876.1| - 0.00011 22.3 7.2 0.0057 16.8 0.2 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|302349238|ref|YP_003816876.1| - 0.00014 21.5 3.4 0.00014 21.5 3.4 3.6 4 0 0 4 4 4 1 4Fe-4S binding domain Fer2_4 PF13510.6 gi|302349238|ref|YP_003816876.1| - 0.00064 19.7 0.2 0.0013 18.8 0.2 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.7 gi|302349238|ref|YP_003816876.1| - 0.0008 20.0 14.0 0.0098 16.5 10.9 3.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|302349238|ref|YP_003816876.1| - 0.008 16.3 0.4 0.008 16.3 0.4 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|302349238|ref|YP_003816876.1| - 0.0085 15.9 0.8 1.4 8.8 0.0 2.4 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|302349238|ref|YP_003816876.1| - 0.025 15.5 17.4 0.044 14.7 7.8 2.8 2 2 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|302349238|ref|YP_003816876.1| - 0.042 14.4 1.2 0.042 14.4 1.2 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|302349238|ref|YP_003816876.1| - 0.05 13.8 4.4 1.5 9.1 0.1 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|302349238|ref|YP_003816876.1| - 4 7.7 18.5 0.093 12.9 1.8 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Sdh_cyt PF01127.22 gi|302349239|ref|YP_003816877.1| - 5e-06 26.6 10.4 6e-06 26.3 10.4 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2070 PF09843.9 gi|302349239|ref|YP_003816877.1| - 0.81 7.9 5.4 0.95 7.7 5.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Sdh_cyt PF01127.22 gi|302349240|ref|YP_003816878.1| - 1.1e-10 41.6 6.1 1.6e-10 41.0 6.1 1.4 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PepSY_TM PF03929.16 gi|302349240|ref|YP_003816878.1| - 0.018 14.7 0.5 0.018 14.7 0.5 2.3 3 0 0 3 3 3 0 PepSY-associated TM region FAD_binding_2 PF00890.24 gi|302349241|ref|YP_003816879.1| - 1.8e-101 340.2 0.1 2.2e-101 339.9 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|302349241|ref|YP_003816879.1| - 3.5e-38 130.5 0.2 5.3e-38 129.9 0.2 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|302349241|ref|YP_003816879.1| - 4e-05 23.4 0.1 0.00013 21.7 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|302349241|ref|YP_003816879.1| - 0.0002 20.7 0.5 0.00078 18.8 0.2 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|302349241|ref|YP_003816879.1| - 0.002 17.4 0.4 0.2 10.9 0.1 2.3 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|302349241|ref|YP_003816879.1| - 0.0026 16.9 0.1 0.084 11.9 0.2 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein HI0933_like PF03486.14 gi|302349241|ref|YP_003816879.1| - 0.011 14.5 0.1 0.87 8.2 0.0 2.8 3 0 0 3 3 3 0 HI0933-like protein NAD_binding_8 PF13450.6 gi|302349241|ref|YP_003816879.1| - 0.066 13.5 0.6 0.25 11.6 0.1 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|302349241|ref|YP_003816879.1| - 0.12 11.4 0.1 0.27 10.3 0.1 1.5 1 0 0 1 1 1 0 Glucose inhibited division protein A GCV_H PF01597.19 gi|302349243|ref|YP_003816881.1| - 2.1e-38 130.9 0.8 2.6e-38 130.6 0.8 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|302349243|ref|YP_003816881.1| - 1.9e-06 27.6 2.1 9.8e-06 25.3 0.8 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|302349243|ref|YP_003816881.1| - 0.016 15.2 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain PmbA_TldD PF01523.16 gi|302349244|ref|YP_003816882.1| - 7.7e-44 150.6 1.1 1e-43 150.2 1.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|302349245|ref|YP_003816883.1| - 2.6e-36 125.9 0.0 3.2e-36 125.6 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase CBP_BcsS PF17036.5 gi|302349245|ref|YP_003816883.1| - 0.5 10.3 3.5 1.1 9.2 0.3 2.4 2 1 0 2 2 2 0 Cellulose biosynthesis protein BcsS Mucin PF01456.17 gi|302349246|ref|YP_003816884.1| - 0.1 12.6 12.4 0.15 12.0 12.4 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein CitMHS PF03600.16 gi|302349247|ref|YP_003816885.1| - 1.1e-33 116.8 25.3 1.1e-33 116.8 25.3 1.9 1 1 1 2 2 2 1 Citrate transporter TrkA_C PF02080.21 gi|302349247|ref|YP_003816885.1| - 6.1e-11 42.0 3.4 2.9e-06 27.0 0.1 2.8 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 gi|302349247|ref|YP_003816885.1| - 2.2e-09 36.9 24.3 2.3e-05 23.6 8.6 2.7 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region MFS_1 PF07690.16 gi|302349248|ref|YP_003816886.1| - 2.2e-13 49.8 55.3 1.9e-11 43.5 26.7 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|302349248|ref|YP_003816886.1| - 3.4e-11 42.7 12.2 3.4e-11 42.7 12.2 2.6 2 1 0 2 2 2 1 Sugar (and other) transporter Aminotran_5 PF00266.19 gi|302349249|ref|YP_003816887.1| - 2.3e-27 95.9 0.0 2.7e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|302349249|ref|YP_003816887.1| - 0.00033 19.3 0.0 0.00047 18.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|302349249|ref|YP_003816887.1| - 0.033 13.5 0.5 0.05 12.9 0.5 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Peptidase_M28 PF04389.17 gi|302349250|ref|YP_003816888.1| - 1.2e-11 44.6 0.0 2.1e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 DUF4910 PF16254.5 gi|302349250|ref|YP_003816888.1| - 5e-06 25.6 0.0 2e-05 23.6 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4910) PA PF02225.22 gi|302349250|ref|YP_003816888.1| - 0.006 16.6 0.0 0.016 15.2 0.0 1.7 1 0 0 1 1 1 1 PA domain DUF3311 PF11755.8 gi|302349252|ref|YP_003816890.1| - 7.8e-16 57.8 5.5 9.1e-16 57.6 5.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) Ribosomal_L29 PF00831.23 gi|302349253|ref|YP_003816891.1| - 0.0082 16.1 1.7 0.02 14.8 1.7 1.7 1 1 0 1 1 1 1 Ribosomal L29 protein Vir_act_alpha_C PF10400.9 gi|302349253|ref|YP_003816891.1| - 0.011 16.4 0.3 1.3 9.8 0.4 2.2 2 0 0 2 2 2 0 Virulence activator alpha C-term Mt_ATP-synt_D PF05873.12 gi|302349253|ref|YP_003816891.1| - 0.15 11.9 0.2 0.45 10.4 0.2 1.8 2 0 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) Flavin_Reduct PF01613.18 gi|302349254|ref|YP_003816892.1| - 9.8e-27 93.9 0.0 1.1e-26 93.7 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain CMAS PF02353.20 gi|302349255|ref|YP_003816893.1| - 6.9e-11 41.9 0.0 8.7e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.13 gi|302349255|ref|YP_003816893.1| - 7e-10 38.8 0.0 4.9e-09 36.0 0.0 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_25 PF13649.6 gi|302349255|ref|YP_003816893.1| - 1.2e-09 38.7 0.0 1.7e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|302349255|ref|YP_003816893.1| - 9e-09 35.3 0.0 1.4e-08 34.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|302349255|ref|YP_003816893.1| - 1.3e-08 34.2 0.0 1.7e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_2 PF00891.18 gi|302349255|ref|YP_003816893.1| - 2.8e-08 33.3 0.0 3.6e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_11 PF08241.12 gi|302349255|ref|YP_003816893.1| - 2.3e-07 31.3 0.0 3.4e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|302349255|ref|YP_003816893.1| - 7.7e-07 29.2 0.0 1e-06 28.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|302349255|ref|YP_003816893.1| - 7.7e-07 28.7 0.0 8.8e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|302349255|ref|YP_003816893.1| - 6.7e-06 26.0 0.0 8.6e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|302349255|ref|YP_003816893.1| - 0.0003 20.2 0.0 0.00042 19.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|302349255|ref|YP_003816893.1| - 0.00056 19.5 0.0 0.00077 19.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain TrmK PF04816.12 gi|302349255|ref|YP_003816893.1| - 0.0012 18.4 0.0 0.0018 17.9 0.0 1.3 1 1 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase PrmA PF06325.13 gi|302349255|ref|YP_003816893.1| - 0.0038 16.7 0.0 0.0042 16.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|302349255|ref|YP_003816893.1| - 0.0088 15.8 0.0 0.016 14.9 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|302349255|ref|YP_003816893.1| - 0.022 14.6 0.0 0.031 14.1 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|302349255|ref|YP_003816893.1| - 0.024 15.4 0.0 0.033 14.9 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|302349255|ref|YP_003816893.1| - 0.051 13.2 0.0 0.068 12.8 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 RPA_interact_N PF14766.6 gi|302349255|ref|YP_003816893.1| - 0.33 10.6 0.9 0.58 9.8 0.1 1.8 2 0 0 2 2 2 0 Replication protein A interacting N-terminal Helicase_RecD PF05127.14 gi|302349256|ref|YP_003816894.1| - 2.5e-54 183.8 0.0 7.2e-54 182.3 0.0 1.8 3 0 0 3 3 3 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|302349256|ref|YP_003816894.1| - 1.7e-39 135.6 0.0 1e-26 93.8 0.0 2.8 2 1 1 3 3 3 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|302349256|ref|YP_003816894.1| - 4e-26 90.8 0.0 9.8e-26 89.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.7 gi|302349256|ref|YP_003816894.1| - 7.5e-06 26.3 0.0 2.6e-05 24.6 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|302349256|ref|YP_003816894.1| - 0.00016 21.9 0.0 0.0004 20.6 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|302349256|ref|YP_003816894.1| - 0.025 14.5 0.0 0.061 13.3 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Arch_flagellin PF01917.16 gi|302349257|ref|YP_003816895.1| - 8e-20 71.7 1.1 1.2e-19 71.1 1.1 1.3 1 1 0 1 1 1 1 Archaebacterial flagellin Tad PF13400.6 gi|302349257|ref|YP_003816895.1| - 0.029 14.7 2.5 0.099 13.0 2.5 1.9 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like AbiH PF14253.6 gi|302349257|ref|YP_003816895.1| - 0.15 11.9 0.1 0.19 11.6 0.1 1.1 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH RecQ5 PF06959.11 gi|302349259|ref|YP_003816897.1| - 0.0066 16.5 4.6 0.0066 16.5 4.6 1.5 2 0 0 2 2 2 1 RecQ helicase protein-like 5 (RecQ5) HisKA_3 PF07730.13 gi|302349259|ref|YP_003816897.1| - 0.045 14.3 0.6 0.045 14.3 0.6 2.8 1 1 2 3 3 3 0 Histidine kinase Spt20 PF12090.8 gi|302349259|ref|YP_003816897.1| - 0.047 13.3 1.3 0.052 13.1 1.3 1.3 1 0 0 1 1 1 0 Spt20 family HisKA PF00512.25 gi|302349259|ref|YP_003816897.1| - 0.14 12.2 2.4 2.8 8.0 0.2 2.6 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF3402 PF11882.8 gi|302349259|ref|YP_003816897.1| - 0.25 10.4 1.5 0.26 10.4 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3402) DUF3275 PF11679.8 gi|302349259|ref|YP_003816897.1| - 1.7 8.6 4.4 2.2 8.2 4.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) Ndc1_Nup PF09531.10 gi|302349259|ref|YP_003816897.1| - 2 7.0 3.7 2.2 6.9 3.7 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF4678 PF15727.5 gi|302349259|ref|YP_003816897.1| - 2.2 7.5 12.3 2.7 7.2 12.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4678) Arch_flagellin PF01917.16 gi|302349260|ref|YP_003816898.1| - 9.6e-07 29.1 3.4 1.2e-06 28.8 3.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin ATPase PF06745.13 gi|302349262|ref|YP_003816900.1| - 1.1e-16 60.9 0.0 1.3e-16 60.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|302349262|ref|YP_003816900.1| - 9.8e-06 25.3 0.0 1.4e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|302349262|ref|YP_003816900.1| - 3.3e-05 23.3 0.0 4.9e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Rad51 NACHT PF05729.12 gi|302349262|ref|YP_003816900.1| - 9.7e-05 22.3 0.0 0.00058 19.8 0.0 1.9 1 1 0 1 1 1 1 NACHT domain Thymidylate_kin PF02223.17 gi|302349262|ref|YP_003816900.1| - 0.00028 20.6 0.0 0.00045 19.9 0.0 1.3 1 0 0 1 1 1 1 Thymidylate kinase PAXNEB PF05625.11 gi|302349262|ref|YP_003816900.1| - 0.00052 19.3 0.2 0.0057 15.8 0.2 2.0 2 0 0 2 2 2 1 PAXNEB protein RecA PF00154.21 gi|302349262|ref|YP_003816900.1| - 0.00069 19.2 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.17 gi|302349262|ref|YP_003816900.1| - 0.0039 16.9 0.0 0.013 15.2 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|302349262|ref|YP_003816900.1| - 0.012 16.0 0.1 0.02 15.3 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|302349262|ref|YP_003816900.1| - 0.017 15.4 0.0 0.032 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|302349262|ref|YP_003816900.1| - 0.036 14.1 0.0 0.056 13.5 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|302349262|ref|YP_003816900.1| - 0.047 13.5 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|302349262|ref|YP_003816900.1| - 0.052 12.9 0.0 0.081 12.2 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain ABC_tran PF00005.27 gi|302349262|ref|YP_003816900.1| - 0.074 13.6 0.0 0.12 12.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter AAA_23 PF13476.6 gi|302349262|ref|YP_003816900.1| - 0.095 13.2 0.1 0.15 12.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain Hydin_ADK PF17213.3 gi|302349262|ref|YP_003816900.1| - 0.11 12.8 0.0 0.32 11.3 0.0 1.7 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain SRP54 PF00448.22 gi|302349262|ref|YP_003816900.1| - 0.15 11.7 0.0 2.1 8.0 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain T2SSE PF00437.20 gi|302349263|ref|YP_003816901.1| - 3.2e-48 164.1 0.0 4.8e-48 163.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|302349263|ref|YP_003816901.1| - 2.8e-05 23.8 0.0 5.6e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Glyco_trans_4_4 PF13579.6 gi|302349263|ref|YP_003816901.1| - 0.0039 17.6 0.1 0.0083 16.6 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain AAA_22 PF13401.6 gi|302349263|ref|YP_003816901.1| - 0.022 15.1 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|302349263|ref|YP_003816901.1| - 0.038 14.5 0.0 0.082 13.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_23 PF13476.6 gi|302349263|ref|YP_003816901.1| - 0.045 14.3 0.8 0.085 13.3 0.8 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|302349263|ref|YP_003816901.1| - 0.054 13.2 0.0 0.085 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|302349263|ref|YP_003816901.1| - 0.19 11.0 0.0 0.33 10.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DEAD PF00270.29 gi|302349263|ref|YP_003816901.1| - 0.19 11.5 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase T2SSF PF00482.23 gi|302349264|ref|YP_003816902.1| - 6.1e-14 52.0 3.8 1.5e-08 34.6 4.0 3.8 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F FUN14 PF04930.15 gi|302349264|ref|YP_003816902.1| - 0.034 14.5 4.2 1.9 8.9 0.0 3.2 3 1 0 3 3 3 0 FUN14 family Neurensin PF14927.6 gi|302349264|ref|YP_003816902.1| - 0.67 9.7 5.6 9.3 6.0 0.4 3.7 3 0 0 3 3 3 0 Neurensin DUF2079 PF09852.9 gi|302349265|ref|YP_003816903.1| - 3.2e-21 75.7 24.7 4.3e-21 75.3 24.7 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2079) AP_endonuc_2 PF01261.24 gi|302349266|ref|YP_003816904.1| - 9.8e-27 93.8 0.6 1.2e-26 93.5 0.6 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|302349266|ref|YP_003816904.1| - 8.4e-06 25.2 0.1 1.3e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 UV-endonuclease UvdE THUMP PF02926.17 gi|302349266|ref|YP_003816904.1| - 0.057 13.5 0.1 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 THUMP domain DUF1799 PF08809.11 gi|302349266|ref|YP_003816904.1| - 0.12 12.5 0.0 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 Phage related hypothetical protein (DUF1799) TF_Zn_Ribbon PF08271.12 gi|302349267|ref|YP_003816905.1| - 0.00026 20.5 0.6 0.53 9.8 0.1 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|302349267|ref|YP_003816905.1| - 0.0018 18.2 0.8 0.0037 17.2 0.8 1.5 1 1 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|302349267|ref|YP_003816905.1| - 0.0028 17.8 2.5 0.64 10.2 0.2 2.3 2 0 0 2 2 2 2 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|302349267|ref|YP_003816905.1| - 0.016 14.6 2.3 1.4 8.4 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|302349267|ref|YP_003816905.1| - 0.065 13.0 1.3 5.2 6.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|302349267|ref|YP_003816905.1| - 0.072 13.1 1.1 4.2 7.4 0.1 2.2 1 1 1 2 2 2 0 CpXC protein Rubredoxin_2 PF18073.1 gi|302349267|ref|YP_003816905.1| - 0.15 11.8 3.9 2.3 8.0 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-NADH-PPase PF09297.11 gi|302349267|ref|YP_003816905.1| - 0.2 11.3 4.4 5.5 6.7 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|302349267|ref|YP_003816905.1| - 0.22 11.5 4.2 8.3 6.4 0.5 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-ACC PF17848.1 gi|302349267|ref|YP_003816905.1| - 0.36 10.9 2.0 15 5.8 0.3 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_4 PF13717.6 gi|302349267|ref|YP_003816905.1| - 0.4 10.6 2.8 10 6.1 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Arch_flagellin PF01917.16 gi|302349268|ref|YP_003816906.1| - 4.8e-21 75.6 4.4 5.8e-21 75.4 4.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Tad PF13400.6 gi|302349268|ref|YP_003816906.1| - 0.32 11.3 6.1 0.094 13.0 2.5 1.9 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF711 PF05167.12 gi|302349270|ref|YP_003816908.1| - 7.8e-33 114.0 0.8 4.8e-32 111.4 0.6 1.9 1 1 1 2 2 2 1 Uncharacterised ACR (DUF711) Anti-adapt_IraP PF10796.9 gi|302349270|ref|YP_003816908.1| - 0.21 12.2 2.3 0.89 10.2 0.1 2.5 3 0 0 3 3 3 0 Sigma-S stabilisation anti-adaptor protein SRP54 PF00448.22 gi|302349271|ref|YP_003816909.1| - 1.4e-64 217.4 0.0 2.1e-64 216.8 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|302349271|ref|YP_003816909.1| - 2.4e-24 85.8 0.0 9.3e-24 83.9 0.0 2.0 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|302349271|ref|YP_003816909.1| - 3.7e-15 55.9 0.2 1.8e-14 53.7 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.6 gi|302349271|ref|YP_003816909.1| - 7.4e-06 26.3 0.1 6.4e-05 23.2 0.0 2.3 3 0 0 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|302349271|ref|YP_003816909.1| - 1.8e-05 25.2 0.1 7.9e-05 23.1 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|302349271|ref|YP_003816909.1| - 3.1e-05 24.2 0.4 7.3e-05 23.0 0.0 1.8 2 0 0 2 2 1 1 AAA domain CbiA PF01656.23 gi|302349271|ref|YP_003816909.1| - 3.1e-05 24.0 0.0 7.2e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|302349271|ref|YP_003816909.1| - 7.5e-05 22.5 2.3 0.00014 21.6 0.2 2.4 2 1 0 2 2 2 1 AAA domain MobB PF03205.14 gi|302349271|ref|YP_003816909.1| - 0.00054 19.9 0.2 0.0024 17.8 0.0 2.1 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 gi|302349271|ref|YP_003816909.1| - 0.0013 18.1 0.0 0.0028 17.0 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin cobW PF02492.19 gi|302349271|ref|YP_003816909.1| - 0.0028 17.3 0.0 0.008 15.8 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 gi|302349271|ref|YP_003816909.1| - 0.0071 16.3 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA PF00004.29 gi|302349271|ref|YP_003816909.1| - 0.0072 16.7 0.0 0.022 15.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|302349271|ref|YP_003816909.1| - 0.018 15.3 0.7 0.041 14.1 0.3 1.9 2 1 0 2 2 1 0 AAA domain MeaB PF03308.16 gi|302349271|ref|YP_003816909.1| - 0.021 13.8 0.4 0.054 12.5 0.4 1.7 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|302349271|ref|YP_003816909.1| - 0.023 14.7 0.0 0.073 13.1 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) LpxK PF02606.14 gi|302349271|ref|YP_003816909.1| - 0.025 13.7 0.9 0.55 9.3 0.1 2.2 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_31 PF13614.6 gi|302349271|ref|YP_003816909.1| - 0.025 14.5 0.0 0.07 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|302349271|ref|YP_003816909.1| - 0.025 14.1 0.5 2.2 7.8 0.5 2.7 1 1 0 1 1 1 0 AAA domain ParA PF10609.9 gi|302349271|ref|YP_003816909.1| - 0.026 14.0 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase NTPase_1 PF03266.15 gi|302349271|ref|YP_003816909.1| - 0.03 14.2 0.5 0.27 11.2 0.5 2.5 1 1 0 1 1 1 0 NTPase MMR_HSR1 PF01926.23 gi|302349271|ref|YP_003816909.1| - 0.031 14.4 0.2 0.18 11.9 0.2 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|302349271|ref|YP_003816909.1| - 0.032 14.0 0.1 0.065 13.0 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein 6PF2K PF01591.18 gi|302349271|ref|YP_003816909.1| - 0.036 13.4 0.0 0.067 12.5 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_18 PF13238.6 gi|302349271|ref|YP_003816909.1| - 0.04 14.5 0.2 0.04 14.5 0.2 2.0 2 1 0 2 2 1 0 AAA domain VirC1 PF07015.11 gi|302349271|ref|YP_003816909.1| - 0.049 12.9 0.0 0.21 10.8 0.0 1.9 2 0 0 2 2 2 0 VirC1 protein AAA_24 PF13479.6 gi|302349271|ref|YP_003816909.1| - 0.075 12.7 0.2 0.25 11.1 0.0 2.0 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|302349271|ref|YP_003816909.1| - 0.08 12.6 0.0 0.24 11.1 0.0 1.8 1 0 0 1 1 1 0 Thymidylate kinase DUF1611 PF07755.11 gi|302349271|ref|YP_003816909.1| - 0.099 11.9 0.2 0.7 9.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain KTI12 PF08433.10 gi|302349271|ref|YP_003816909.1| - 0.1 12.1 0.0 0.19 11.1 0.0 1.5 1 1 0 1 1 1 0 Chromatin associated protein KTI12 PFOR_II PF17147.4 gi|302349271|ref|YP_003816909.1| - 0.15 12.4 1.0 5.4 7.4 0.0 3.3 4 0 0 4 4 4 0 Pyruvate:ferredoxin oxidoreductase core domain II AAA_17 PF13207.6 gi|302349271|ref|YP_003816909.1| - 0.53 10.7 2.6 0.44 11.0 0.3 2.2 2 1 0 2 2 1 0 AAA domain Alba PF01918.21 gi|302349272|ref|YP_003816910.1| - 4.8e-11 42.3 0.8 6.7e-11 41.9 0.8 1.2 1 0 0 1 1 1 1 Alba ABC_tran PF00005.27 gi|302349275|ref|YP_003816913.1| - 4e-24 85.7 0.0 7.1e-24 84.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|302349275|ref|YP_003816913.1| - 4e-10 40.0 0.7 0.00033 20.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|302349275|ref|YP_003816913.1| - 3.2e-05 24.2 0.0 7e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|302349275|ref|YP_003816913.1| - 0.0043 17.4 0.5 0.014 15.8 0.2 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|302349275|ref|YP_003816913.1| - 0.012 15.2 0.1 0.056 13.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|302349275|ref|YP_003816913.1| - 0.015 14.7 0.1 1.6 8.1 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|302349275|ref|YP_003816913.1| - 0.023 15.2 0.1 0.036 14.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|302349275|ref|YP_003816913.1| - 0.046 13.5 0.2 0.083 12.6 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|302349275|ref|YP_003816913.1| - 0.048 13.0 0.0 0.3 10.4 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|302349275|ref|YP_003816913.1| - 0.062 13.0 0.0 0.17 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain HTH_psq PF05225.16 gi|302349275|ref|YP_003816913.1| - 0.062 13.0 0.2 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 helix-turn-helix, Psq domain AAA_33 PF13671.6 gi|302349275|ref|YP_003816913.1| - 0.12 12.6 0.0 0.4 10.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|302349275|ref|YP_003816913.1| - 0.15 11.6 0.1 0.26 10.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 gi|302349275|ref|YP_003816913.1| - 0.18 11.8 0.0 0.47 10.5 0.0 1.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE adh_short_C2 PF13561.6 gi|302349276|ref|YP_003816914.1| - 8.2e-21 74.6 0.0 1.2e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|302349276|ref|YP_003816914.1| - 5.5e-15 55.3 0.0 8e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|302349276|ref|YP_003816914.1| - 0.0011 19.0 0.1 0.0018 18.2 0.1 1.3 1 0 0 1 1 1 1 KR domain YAcAr PF10686.9 gi|302349276|ref|YP_003816914.1| - 0.14 12.2 0.3 17 5.4 0.0 2.8 2 1 1 3 3 3 0 YspA, cpYpsA-related SLOG family DUF1152 PF06626.12 gi|302349277|ref|YP_003816915.1| - 5.3e-112 373.8 1.1 6.1e-112 373.6 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) OEP PF02321.18 gi|302349278|ref|YP_003816916.1| - 0.055 13.3 2.1 0.056 13.3 2.1 1.1 1 0 0 1 1 1 0 Outer membrane efflux protein RHH_1 PF01402.21 gi|302349279|ref|YP_003816917.1| - 2.2e-10 40.1 0.7 2.8e-10 39.8 0.7 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|302349279|ref|YP_003816917.1| - 8.6e-06 25.6 0.6 1.1e-05 25.3 0.6 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain CopG_antitoxin PF12441.8 gi|302349279|ref|YP_003816917.1| - 0.014 15.9 0.2 0.018 15.5 0.2 1.2 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system VapB_antitoxin PF09957.9 gi|302349279|ref|YP_003816917.1| - 0.06 13.3 0.8 0.17 11.9 0.8 1.9 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB Arteri_nsp7a PF16749.5 gi|302349279|ref|YP_003816917.1| - 0.23 11.6 0.0 0.28 11.4 0.0 1.0 1 0 0 1 1 1 0 Arterivirus nonstructural protein 7 alpha Glyco_hydro_68 PF02435.16 gi|302349280|ref|YP_003816918.1| - 0.2 10.5 0.0 0.25 10.2 0.0 1.1 1 0 0 1 1 1 0 Levansucrase/Invertase PPDK_N PF01326.19 gi|302349281|ref|YP_003816919.1| - 3.1e-14 53.0 0.0 9e-12 44.9 0.0 2.0 2 0 0 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain tRNA-synt_His PF13393.6 gi|302349282|ref|YP_003816920.1| - 6.9e-44 150.4 0.0 9.6e-44 149.9 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|302349282|ref|YP_003816920.1| - 1e-12 48.0 0.0 2.1e-12 47.0 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|302349282|ref|YP_003816920.1| - 1.8e-08 34.5 0.0 6.3e-08 32.8 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|302349282|ref|YP_003816920.1| - 0.1 12.0 0.0 0.26 10.7 0.0 1.6 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) Arm-DNA-bind_1 PF09003.10 gi|302349282|ref|YP_003816920.1| - 0.13 12.5 0.2 8.9 6.5 0.1 2.4 2 0 0 2 2 2 0 Bacteriophage lambda integrase, Arm DNA-binding domain tRNA-synt_2 PF00152.20 gi|302349282|ref|YP_003816920.1| - 0.15 11.2 0.0 2.3 7.2 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) CBS PF00571.28 gi|302349283|ref|YP_003816921.1| - 2.1e-32 111.3 3.1 6.1e-10 39.4 0.1 4.1 4 0 0 4 4 4 4 CBS domain ADH_N PF08240.12 gi|302349284|ref|YP_003816922.1| - 3e-28 97.9 1.5 8.7e-28 96.4 1.0 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|302349284|ref|YP_003816922.1| - 2.5e-23 82.5 0.1 5.4e-23 81.4 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|302349284|ref|YP_003816922.1| - 2e-10 41.8 0.1 5.8e-10 40.3 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase DapB_N PF01113.20 gi|302349284|ref|YP_003816922.1| - 0.022 14.9 0.3 4.2 7.5 0.0 2.5 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|302349284|ref|YP_003816922.1| - 0.093 13.2 1.3 1.2 9.6 0.5 2.4 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DUF4346 PF14251.6 gi|302349285|ref|YP_003816923.1| - 5.2e-05 23.3 0.0 9.8e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) Cytochrom_B_N_2 PF13631.6 gi|302349286|ref|YP_003816924.1| - 4e-13 49.7 8.0 4e-13 49.7 8.0 3.5 3 1 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|302349286|ref|YP_003816924.1| - 0.0012 18.7 20.1 0.01 15.7 14.8 3.5 2 1 0 2 2 2 1 Cytochrome b/b6/petB DUF4405 PF14358.6 gi|302349286|ref|YP_003816924.1| - 0.0088 16.6 11.9 0.0088 16.6 11.9 3.4 4 0 0 4 4 4 1 Domain of unknown function (DUF4405) DUF4079 PF13301.6 gi|302349286|ref|YP_003816924.1| - 0.043 14.0 18.5 0.065 13.4 5.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4079) VKOR PF07884.14 gi|302349287|ref|YP_003816925.1| - 1.4e-21 76.9 12.5 1.7e-21 76.7 12.5 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family tRNA_edit PF04073.15 gi|302349288|ref|YP_003816926.1| - 6.9e-31 106.9 0.0 8.1e-31 106.7 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain AAA_22 PF13401.6 gi|302349289|ref|YP_003816927.1| - 0.13 12.6 0.0 0.15 12.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain ThiS PF02597.20 gi|302349290|ref|YP_003816928.1| - 0.00014 22.5 0.1 0.00019 22.0 0.1 1.2 1 0 0 1 1 1 1 ThiS family Creatininase PF02633.14 gi|302349291|ref|YP_003816929.1| - 6.1e-40 137.2 0.0 7.6e-40 136.9 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase His_Phos_1 PF00300.22 gi|302349292|ref|YP_003816930.1| - 7e-49 166.2 0.0 8.2e-49 165.9 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) DUF973 PF06157.11 gi|302349294|ref|YP_003816932.1| - 1.1e-10 41.1 3.5 3e-08 33.1 1.7 2.1 1 1 0 2 2 2 2 Protein of unknown function (DUF973) AA_permease_2 PF13520.6 gi|302349295|ref|YP_003816933.1| - 2.3e-39 135.5 63.0 2.3e-39 135.5 63.0 2.9 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|302349295|ref|YP_003816933.1| - 1.8e-23 82.9 82.4 3.9e-23 81.8 80.9 2.0 1 1 1 2 2 2 1 Amino acid permease Y_Y_Y PF07495.13 gi|302349297|ref|YP_003816935.1| - 0.009 16.0 0.7 0.32 11.0 0.1 3.3 3 0 0 3 3 3 1 Y_Y_Y domain Tubulin_2 PF13809.6 gi|302349298|ref|YP_003816936.1| - 3.5e-19 69.2 0.0 1.7e-18 66.9 0.0 2.1 2 0 0 2 2 2 1 Tubulin like Tubulin PF00091.25 gi|302349298|ref|YP_003816936.1| - 5.4e-09 36.5 0.0 1.1e-08 35.6 0.0 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Baculo_PEP_C PF04513.12 gi|302349298|ref|YP_003816936.1| - 0.0091 16.0 3.2 14 5.8 0.1 4.0 4 1 0 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.11 gi|302349298|ref|YP_003816936.1| - 0.035 14.2 2.9 5.6 7.0 0.1 3.6 4 0 0 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF948 PF06103.11 gi|302349298|ref|YP_003816936.1| - 0.18 12.1 0.3 44 4.4 0.0 4.1 4 1 1 5 5 5 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|302349298|ref|YP_003816936.1| - 1.6 8.8 7.9 13 5.8 0.0 3.5 3 0 0 3 3 3 0 Laminin Domain II Spc7 PF08317.11 gi|302349298|ref|YP_003816936.1| - 3 6.7 6.0 0.57 9.0 0.3 2.6 3 0 0 3 3 3 0 Spc7 kinetochore protein HALZ PF02183.18 gi|302349298|ref|YP_003816936.1| - 7.1 6.9 7.9 14 6.0 0.1 3.9 4 0 0 4 4 4 0 Homeobox associated leucine zipper DUF87 PF01935.17 gi|302349300|ref|YP_003816938.1| - 2.6e-29 103.0 0.0 3.4e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|302349300|ref|YP_003816938.1| - 0.0011 17.6 0.1 0.25 9.9 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|302349300|ref|YP_003816938.1| - 0.0064 16.6 0.0 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|302349300|ref|YP_003816938.1| - 0.047 12.6 0.0 0.65 8.9 0.0 2.3 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.10 gi|302349301|ref|YP_003816939.1| - 3.6e-13 49.8 0.0 5.1e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 NurA domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Acidilobus_saccharovorans_345_15_uid51395/NC_014374.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Acidilobus_saccharovorans_345_15_uid51395/NC_014374.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Acidilobus_saccharovorans_345_15_uid51395/NC_014374.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Acidilobus_saccharovorans_345_15_uid51395/NC_014374.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 10:46:12 2019 # [ok]